Query 023987
Match_columns 274
No_of_seqs 215 out of 2142
Neff 7.4
Searched_HMMs 46136
Date Fri Mar 29 08:06:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023987.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023987hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0462 PrsA Phosphoribosylpyr 100.0 3E-74 6.5E-79 517.7 28.1 248 14-271 2-255 (314)
2 PLN02297 ribose-phosphate pyro 100.0 1.3E-68 2.9E-73 489.3 30.1 258 13-271 13-271 (326)
3 PRK04923 ribose-phosphate pyro 100.0 1.1E-66 2.5E-71 477.5 28.8 249 13-271 3-258 (319)
4 PTZ00145 phosphoribosylpyropho 100.0 5.8E-66 1.3E-70 484.6 28.2 246 15-271 118-376 (439)
5 PRK00553 ribose-phosphate pyro 100.0 1.2E-65 2.6E-70 473.1 29.6 249 13-271 6-259 (332)
6 PRK02269 ribose-phosphate pyro 100.0 1.4E-65 3E-70 471.3 28.7 248 14-271 3-258 (320)
7 PRK02458 ribose-phosphate pyro 100.0 2.8E-65 6E-70 469.3 28.6 250 12-271 5-259 (323)
8 PRK07199 phosphoribosylpyropho 100.0 7.8E-65 1.7E-69 462.7 29.6 243 16-271 2-252 (301)
9 PRK02812 ribose-phosphate pyro 100.0 4.1E-64 9E-69 462.2 29.3 250 11-271 16-271 (330)
10 KOG1448 Ribose-phosphate pyrop 100.0 5.4E-64 1.2E-68 442.4 20.8 247 15-271 2-255 (316)
11 PRK01259 ribose-phosphate pyro 100.0 2.6E-62 5.6E-67 447.9 28.3 244 17-271 1-249 (309)
12 PRK03092 ribose-phosphate pyro 100.0 1.8E-62 3.8E-67 447.8 26.8 234 28-271 1-242 (304)
13 PRK00934 ribose-phosphate pyro 100.0 5.4E-62 1.2E-66 441.7 27.8 241 18-271 1-245 (285)
14 PRK06827 phosphoribosylpyropho 100.0 2.4E-61 5.1E-66 449.9 28.4 248 13-271 5-305 (382)
15 TIGR01251 ribP_PPkin ribose-ph 100.0 5.9E-60 1.3E-64 432.8 28.9 244 17-271 1-251 (308)
16 PLN02369 ribose-phosphate pyro 100.0 5.3E-60 1.2E-64 431.2 27.4 236 26-271 1-243 (302)
17 KOG1503 Phosphoribosylpyrophos 100.0 4.7E-49 1E-53 338.1 21.5 247 14-271 6-288 (354)
18 PF13793 Pribosyltran_N: N-ter 100.0 2.4E-37 5.3E-42 244.6 13.0 112 17-132 1-114 (116)
19 PF14572 Pribosyl_synth: Phosp 99.8 1.8E-20 3.8E-25 158.0 8.9 90 182-271 2-124 (184)
20 PRK13811 orotate phosphoribosy 99.7 4.4E-17 9.6E-22 137.4 13.0 134 124-265 3-139 (170)
21 PRK11595 DNA utilization prote 99.6 4.8E-16 1E-20 136.9 4.6 162 87-266 50-223 (227)
22 COG0634 Hpt Hypoxanthine-guani 99.6 1.9E-14 4.2E-19 119.7 11.7 99 168-266 20-129 (178)
23 PRK09162 hypoxanthine-guanine 99.6 4.4E-14 9.5E-19 120.3 12.0 101 168-268 25-135 (181)
24 TIGR01203 HGPRTase hypoxanthin 99.6 2.9E-14 6.3E-19 119.8 10.5 102 168-269 11-123 (166)
25 PRK15423 hypoxanthine phosphor 99.5 1.2E-13 2.5E-18 117.3 12.1 102 167-268 16-130 (178)
26 PRK13812 orotate phosphoribosy 99.5 2.2E-13 4.8E-18 115.4 12.2 96 168-265 44-142 (176)
27 COG1040 ComFC Predicted amidop 99.5 5.4E-14 1.2E-18 123.6 8.4 150 96-266 65-220 (225)
28 PF00156 Pribosyltran: Phospho 99.5 2.3E-13 5.1E-18 107.9 10.5 99 168-267 13-125 (125)
29 PLN02238 hypoxanthine phosphor 99.5 3.5E-13 7.6E-18 115.5 11.7 101 168-268 20-135 (189)
30 PLN02293 adenine phosphoribosy 99.5 6.8E-13 1.5E-17 113.5 12.8 100 168-270 50-165 (187)
31 PRK05205 bifunctional pyrimidi 99.4 1E-12 2.2E-17 111.4 10.5 101 168-268 15-134 (176)
32 TIGR00201 comF comF family pro 99.4 2.7E-13 5.8E-18 116.3 6.2 146 100-266 36-188 (190)
33 PRK02304 adenine phosphoribosy 99.4 2.5E-12 5.4E-17 108.8 11.1 86 183-268 51-152 (175)
34 PRK02277 orotate phosphoribosy 99.4 3.6E-12 7.7E-17 110.2 11.2 98 169-267 72-177 (200)
35 PTZ00271 hypoxanthine-guanine 99.4 4.2E-12 9E-17 110.4 11.6 103 167-269 35-157 (211)
36 PTZ00149 hypoxanthine phosphor 99.4 3.6E-12 7.8E-17 112.7 10.6 101 167-267 65-187 (241)
37 TIGR01367 pyrE_Therm orotate p 99.4 8.3E-12 1.8E-16 106.8 12.5 95 168-266 44-141 (187)
38 TIGR01090 apt adenine phosphor 99.4 6.7E-12 1.5E-16 105.7 11.1 96 168-266 34-145 (169)
39 PRK13809 orotate phosphoribosy 99.4 5.1E-12 1.1E-16 109.6 10.4 98 169-266 52-154 (206)
40 PRK00455 pyrE orotate phosphor 99.3 9.9E-12 2.2E-16 107.5 11.5 100 168-269 50-152 (202)
41 TIGR00336 pyrE orotate phospho 99.3 1E-11 2.2E-16 105.0 10.6 95 169-266 42-144 (173)
42 PRK07322 adenine phosphoribosy 99.3 2E-11 4.4E-16 103.7 12.2 97 170-266 39-156 (178)
43 PRK12560 adenine phosphoribosy 99.3 2E-11 4.3E-16 104.5 10.9 97 170-266 38-150 (187)
44 PRK08525 amidophosphoribosyltr 99.3 1.9E-11 4.1E-16 117.5 11.6 100 171-271 263-381 (445)
45 PRK00129 upp uracil phosphorib 99.2 1.1E-10 2.3E-15 101.7 11.2 84 183-266 70-160 (209)
46 PRK09219 xanthine phosphoribos 99.2 2.1E-10 4.6E-15 98.3 11.2 84 182-265 49-152 (189)
47 COG0856 Orotate phosphoribosyl 99.2 1.3E-10 2.8E-15 96.4 9.3 98 169-266 72-177 (203)
48 PRK13810 orotate phosphoribosy 99.2 2.2E-10 4.7E-15 98.1 10.7 83 182-265 72-157 (187)
49 PRK05793 amidophosphoribosyltr 99.2 1.7E-10 3.7E-15 111.6 10.8 101 171-272 276-395 (469)
50 COG0461 PyrE Orotate phosphori 99.2 5.4E-10 1.2E-14 96.1 12.4 83 183-265 61-147 (201)
51 TIGR01744 XPRTase xanthine pho 99.1 4E-10 8.7E-15 96.7 11.3 97 169-265 35-152 (191)
52 TIGR01091 upp uracil phosphori 99.1 6.4E-10 1.4E-14 96.7 11.1 84 183-266 68-158 (207)
53 PRK08558 adenine phosphoribosy 99.1 1E-09 2.2E-14 97.4 11.0 98 169-266 96-212 (238)
54 PLN02440 amidophosphoribosyltr 99.1 8E-10 1.7E-14 107.2 10.6 99 169-267 261-377 (479)
55 PRK09177 xanthine-guanine phos 99.0 4E-09 8.6E-14 87.8 10.7 86 168-255 18-109 (156)
56 COG2236 Predicted phosphoribos 99.0 1.8E-09 3.9E-14 92.3 8.5 98 168-266 15-123 (192)
57 PRK06031 phosphoribosyltransfe 99.0 4.2E-09 9.1E-14 93.0 11.0 95 171-265 71-189 (233)
58 PRK05500 bifunctional orotidin 99.0 3.3E-09 7.2E-14 102.4 10.7 83 183-266 344-429 (477)
59 PRK09123 amidophosphoribosyltr 99.0 8E-09 1.7E-13 100.2 12.9 101 169-270 281-405 (479)
60 TIGR01743 purR_Bsub pur operon 99.0 6.6E-09 1.4E-13 93.3 11.2 84 182-265 127-229 (268)
61 COG0503 Apt Adenine/guanine ph 98.9 7.4E-09 1.6E-13 88.0 10.6 95 169-266 42-152 (179)
62 PRK08341 amidophosphoribosyltr 98.9 4.2E-09 9.1E-14 101.1 10.1 97 170-267 258-371 (442)
63 PRK07349 amidophosphoribosyltr 98.9 9.6E-09 2.1E-13 99.9 11.6 98 169-266 298-413 (500)
64 PRK07272 amidophosphoribosyltr 98.9 5.7E-09 1.2E-13 101.1 10.1 103 169-271 271-391 (484)
65 PRK06781 amidophosphoribosyltr 98.9 1.2E-08 2.6E-13 98.7 11.2 99 170-268 270-386 (471)
66 PRK09213 pur operon repressor; 98.9 1.5E-08 3.2E-13 91.3 11.0 84 182-265 129-231 (271)
67 PRK09246 amidophosphoribosyltr 98.9 1E-08 2.2E-13 100.2 10.4 99 169-267 278-395 (501)
68 TIGR01134 purF amidophosphorib 98.8 3.2E-08 7E-13 95.3 10.5 98 169-266 259-374 (442)
69 KOG3367 Hypoxanthine-guanine p 98.8 1.7E-08 3.7E-13 83.7 7.0 99 168-266 45-161 (216)
70 PRK07631 amidophosphoribosyltr 98.8 3.1E-08 6.8E-13 95.8 9.9 99 170-268 270-386 (475)
71 KOG1712 Adenine phosphoribosyl 98.7 3.6E-08 7.8E-13 80.9 7.9 102 168-269 44-161 (183)
72 PRK06388 amidophosphoribosyltr 98.6 1.9E-07 4.1E-12 90.5 10.5 96 171-267 279-393 (474)
73 PRK07847 amidophosphoribosyltr 98.5 7.5E-07 1.6E-11 87.0 9.7 96 170-266 289-403 (510)
74 TIGR01251 ribP_PPkin ribose-ph 98.4 1.1E-05 2.4E-10 74.3 16.4 137 15-179 159-297 (308)
75 COG1926 Predicted phosphoribos 98.2 1.5E-05 3.3E-10 68.6 10.5 100 167-266 9-160 (220)
76 COG2065 PyrR Pyrimidine operon 98.2 1.5E-05 3.2E-10 66.0 9.1 95 171-265 18-132 (179)
77 COG0034 PurF Glutamine phospho 98.0 1.5E-05 3.3E-10 75.7 7.5 97 170-266 270-384 (470)
78 PF14681 UPRTase: Uracil phosp 97.9 0.00016 3.5E-09 62.8 11.4 84 184-267 68-160 (207)
79 PLN02541 uracil phosphoribosyl 97.9 0.0001 2.2E-09 65.6 9.7 81 185-265 104-194 (244)
80 COG0035 Upp Uracil phosphoribo 97.6 0.00032 7E-09 60.6 8.7 83 184-266 71-161 (210)
81 KOG0572 Glutamine phosphoribos 97.5 0.00025 5.4E-09 66.0 6.3 43 223-265 349-391 (474)
82 PRK07199 phosphoribosylpyropho 97.3 0.017 3.7E-07 53.1 16.0 132 16-179 161-293 (301)
83 PRK00934 ribose-phosphate pyro 97.1 0.024 5.2E-07 51.7 14.7 127 16-177 156-284 (285)
84 PRK04923 ribose-phosphate pyro 97.0 0.042 9.1E-07 50.9 16.3 139 15-179 167-307 (319)
85 PRK03092 ribose-phosphate pyro 96.8 0.077 1.7E-06 48.9 16.2 137 15-179 149-290 (304)
86 PRK02458 ribose-phosphate pyro 96.6 0.077 1.7E-06 49.3 14.4 137 15-179 169-306 (323)
87 PRK01259 ribose-phosphate pyro 96.6 0.12 2.6E-06 47.7 15.5 140 15-179 158-298 (309)
88 COG0462 PrsA Phosphoribosylpyr 96.4 0.13 2.9E-06 47.3 14.5 136 16-180 164-304 (314)
89 PRK15423 hypoxanthine phosphor 96.4 0.096 2.1E-06 44.5 12.5 104 5-111 23-136 (178)
90 PRK02269 ribose-phosphate pyro 96.4 0.21 4.6E-06 46.3 15.7 140 15-179 166-306 (320)
91 PLN02369 ribose-phosphate pyro 96.3 0.36 7.8E-06 44.4 16.5 139 15-179 151-291 (302)
92 PF15609 PRTase_2: Phosphoribo 96.0 0.012 2.6E-07 50.3 4.9 39 229-267 120-158 (191)
93 PTZ00145 phosphoribosylpyropho 95.8 0.48 1E-05 45.8 15.3 137 16-179 280-425 (439)
94 PRK02812 ribose-phosphate pyro 95.6 0.92 2E-05 42.3 16.5 139 15-179 179-319 (330)
95 PRK09162 hypoxanthine-guanine 95.6 0.26 5.6E-06 41.8 11.6 87 16-105 42-134 (181)
96 PF13793 Pribosyltran_N: N-ter 95.4 0.35 7.5E-06 38.2 11.0 78 191-268 6-89 (116)
97 TIGR01203 HGPRTase hypoxanthin 95.3 0.44 9.6E-06 39.8 11.8 96 5-105 17-121 (166)
98 PRK06827 phosphoribosylpyropho 95.0 0.77 1.7E-05 43.7 14.0 141 16-179 208-357 (382)
99 PTZ00271 hypoxanthine-guanine 94.3 0.91 2E-05 39.6 11.6 94 15-110 57-161 (211)
100 PLN02238 hypoxanthine phosphor 94.2 1.2 2.7E-05 38.0 12.1 86 17-105 37-134 (189)
101 COG0634 Hpt Hypoxanthine-guani 93.0 1.9 4.2E-05 36.4 10.9 88 13-103 34-128 (178)
102 PRK00553 ribose-phosphate pyro 93.0 1.5 3.2E-05 41.0 11.3 84 184-268 9-98 (332)
103 PRK00129 upp uracil phosphorib 93.0 1.4 3E-05 38.2 10.6 87 15-104 70-160 (209)
104 PLN02440 amidophosphoribosyltr 92.6 2.5 5.4E-05 41.5 12.9 125 14-149 275-421 (479)
105 PRK08525 amidophosphoribosyltr 91.9 3.6 7.7E-05 40.0 12.9 101 7-110 268-382 (445)
106 TIGR01091 upp uracil phosphori 91.6 2.5 5.5E-05 36.5 10.5 87 15-104 68-158 (207)
107 PRK09123 amidophosphoribosyltr 91.6 3.2 6.9E-05 40.7 12.3 121 15-147 296-439 (479)
108 PTZ00149 hypoxanthine phosphor 90.8 3.9 8.5E-05 36.4 11.1 97 5-104 72-186 (241)
109 PRK05205 bifunctional pyrimidi 90.2 5.2 0.00011 33.6 10.9 88 15-105 31-133 (176)
110 PRK07272 amidophosphoribosyltr 89.9 2.3 5.1E-05 41.7 9.7 122 16-148 287-430 (484)
111 PLN02297 ribose-phosphate pyro 88.3 6.9 0.00015 36.5 11.1 82 186-268 17-106 (326)
112 KOG1017 Predicted uracil phosp 88.2 0.75 1.6E-05 39.7 4.3 38 223-260 182-219 (267)
113 PF15610 PRTase_3: PRTase ComF 88.0 0.62 1.3E-05 42.0 3.8 40 225-264 133-172 (274)
114 TIGR01090 apt adenine phosphor 87.6 7.9 0.00017 32.2 10.2 77 23-102 55-143 (169)
115 PRK02304 adenine phosphoribosy 86.7 8.7 0.00019 32.1 10.0 75 22-99 59-145 (175)
116 PRK08341 amidophosphoribosyltr 84.0 9.3 0.0002 37.1 10.0 88 15-105 272-371 (442)
117 PF14572 Pribosyl_synth: Phosp 83.5 7.4 0.00016 33.2 8.0 95 59-179 76-173 (184)
118 TIGR01134 purF amidophosphorib 83.2 20 0.00044 34.8 12.0 119 16-148 275-418 (442)
119 PRK05793 amidophosphoribosyltr 83.2 13 0.00028 36.4 10.7 91 15-108 289-393 (469)
120 PRK13811 orotate phosphoribosy 82.9 8 0.00017 32.3 8.1 68 23-97 65-133 (170)
121 PRK02277 orotate phosphoribosy 81.5 12 0.00026 32.1 8.8 78 22-103 93-175 (200)
122 PF00156 Pribosyltran: Phospho 78.9 27 0.00058 26.7 11.2 78 22-103 35-123 (125)
123 TIGR01367 pyrE_Therm orotate p 78.5 41 0.00088 28.6 11.4 77 16-101 60-138 (187)
124 PRK00455 pyrE orotate phosphor 75.0 36 0.00078 29.1 9.9 74 22-101 72-146 (202)
125 PLN02293 adenine phosphoribosy 74.7 52 0.0011 28.0 11.0 75 22-101 70-158 (187)
126 PRK13812 orotate phosphoribosy 74.3 20 0.00044 30.1 8.0 81 18-105 61-146 (176)
127 PRK07349 amidophosphoribosyltr 72.3 53 0.0012 32.5 11.4 80 23-105 321-414 (500)
128 PRK09246 amidophosphoribosyltr 71.7 46 0.001 32.9 10.9 85 16-103 295-393 (501)
129 PF01488 Shikimate_DH: Shikima 68.6 12 0.00026 29.8 5.1 37 225-265 7-43 (135)
130 PLN02501 digalactosyldiacylgly 67.5 58 0.0013 33.9 10.6 109 21-142 283-402 (794)
131 PRK12560 adenine phosphoribosy 66.0 54 0.0012 27.8 8.9 74 23-100 60-146 (187)
132 PF01380 SIS: SIS domain SIS d 65.4 6.3 0.00014 30.4 2.8 81 11-98 2-83 (131)
133 TIGR00336 pyrE orotate phospho 64.9 40 0.00086 28.1 7.8 75 18-98 57-138 (173)
134 PRK06781 amidophosphoribosyltr 62.3 48 0.0011 32.5 8.9 90 15-107 284-387 (471)
135 smart00450 RHOD Rhodanese Homo 61.0 16 0.00035 26.0 4.2 35 227-264 53-87 (100)
136 cd01529 4RHOD_Repeats Member o 60.7 17 0.00037 26.7 4.3 33 229-264 55-87 (96)
137 cd05008 SIS_GlmS_GlmD_1 SIS (S 60.7 35 0.00076 26.1 6.3 79 17-103 2-80 (126)
138 PF14681 UPRTase: Uracil phosp 60.5 96 0.0021 26.7 9.6 84 16-102 68-157 (207)
139 PRK07631 amidophosphoribosyltr 58.7 76 0.0017 31.2 9.5 89 16-107 285-387 (475)
140 cd01444 GlpE_ST GlpE sulfurtra 58.5 17 0.00036 26.4 4.0 32 229-263 55-86 (96)
141 cd05009 SIS_GlmS_GlmD_2 SIS (S 58.4 40 0.00086 26.6 6.5 94 5-104 4-97 (153)
142 cd00158 RHOD Rhodanese Homolog 58.3 20 0.00044 25.1 4.3 35 227-264 47-81 (89)
143 COG0034 PurF Glutamine phospho 58.1 95 0.002 30.3 9.7 125 14-150 283-430 (470)
144 PRK11595 DNA utilization prote 55.4 46 0.001 29.0 6.8 75 25-102 134-221 (227)
145 COG2236 Predicted phosphoribos 54.4 91 0.002 26.8 8.2 70 14-84 29-105 (192)
146 cd05013 SIS_RpiR RpiR-like pro 54.0 36 0.00079 26.0 5.5 90 7-104 6-95 (139)
147 COG0856 Orotate phosphoribosyl 52.1 69 0.0015 27.3 6.8 73 23-100 95-173 (203)
148 PRK06388 amidophosphoribosyltr 51.6 1.4E+02 0.003 29.4 10.0 80 24-106 301-394 (474)
149 cd05014 SIS_Kpsf KpsF-like pro 50.9 85 0.0018 24.0 7.1 77 16-100 2-79 (128)
150 PRK13809 orotate phosphoribosy 50.5 97 0.0021 26.8 7.9 71 24-99 77-149 (206)
151 PRK07847 amidophosphoribosyltr 50.3 1.3E+02 0.0028 29.9 9.6 81 23-106 311-405 (510)
152 cd01523 RHOD_Lact_B Member of 50.3 27 0.00058 25.7 3.9 30 229-262 60-89 (100)
153 PRK07322 adenine phosphoribosy 49.9 1.5E+02 0.0033 24.7 11.3 81 18-101 55-153 (178)
154 cd01518 RHOD_YceA Member of th 48.5 34 0.00073 25.3 4.2 33 229-264 60-92 (101)
155 KOG0814 Glyoxylase [General fu 47.7 24 0.00052 30.1 3.5 45 222-269 23-67 (237)
156 cd01528 RHOD_2 Member of the R 46.2 39 0.00084 24.9 4.3 33 229-264 57-89 (101)
157 cd01519 RHOD_HSP67B2 Member of 45.6 36 0.00077 25.1 4.0 33 229-264 65-97 (106)
158 cd04814 PA_M28_1 PA_M28_1: Pro 44.5 48 0.001 27.1 4.8 41 226-266 44-98 (142)
159 cd01532 4RHOD_Repeat_1 Member 43.2 35 0.00077 24.8 3.6 32 229-263 49-82 (92)
160 PRK15482 transcriptional regul 42.6 51 0.0011 29.5 5.2 80 12-99 133-213 (285)
161 cd04820 PA_M28_1_1 PA_M28_1_1: 42.1 54 0.0012 26.6 4.7 42 225-266 45-94 (137)
162 PRK11337 DNA-binding transcrip 40.9 62 0.0013 29.0 5.5 84 11-102 137-220 (292)
163 TIGR01809 Shik-DH-AROM shikima 40.2 57 0.0012 29.5 5.1 35 227-265 122-156 (282)
164 cd01527 RHOD_YgaP Member of th 40.1 46 0.001 24.3 3.8 32 229-263 53-84 (99)
165 PRK11557 putative DNA-binding 39.8 70 0.0015 28.4 5.6 81 12-100 126-207 (278)
166 cd01524 RHOD_Pyr_redox Member 39.5 57 0.0012 23.5 4.2 31 230-264 51-81 (90)
167 PRK14093 UDP-N-acetylmuramoyla 39.4 3.4E+02 0.0073 26.4 10.7 108 27-151 297-412 (479)
168 PRK05320 rhodanese superfamily 38.4 55 0.0012 29.3 4.7 33 228-263 173-205 (257)
169 KOG1448 Ribose-phosphate pyrop 38.0 1.5E+02 0.0033 27.3 7.3 97 9-110 157-256 (316)
170 PLN02962 hydroxyacylglutathion 38.0 48 0.001 29.6 4.2 39 228-269 33-71 (251)
171 PF12641 Flavodoxin_3: Flavodo 37.8 2.1E+02 0.0046 23.6 7.8 12 26-37 12-23 (160)
172 TIGR01744 XPRTase xanthine pho 36.9 2.2E+02 0.0048 24.2 8.0 72 22-97 58-146 (191)
173 cd05710 SIS_1 A subgroup of th 36.9 78 0.0017 24.4 4.8 80 17-104 2-82 (120)
174 PF07931 CPT: Chloramphenicol 36.4 41 0.0009 28.3 3.3 21 234-254 86-107 (174)
175 cd01447 Polysulfide_ST Polysul 36.4 38 0.00081 24.8 2.8 32 229-263 60-91 (103)
176 TIGR02981 phageshock_pspE phag 36.2 77 0.0017 23.9 4.6 31 230-263 58-88 (101)
177 PLN02160 thiosulfate sulfurtra 36.1 58 0.0012 26.0 4.0 33 229-264 80-112 (136)
178 cd01525 RHOD_Kc Member of the 35.3 68 0.0015 23.6 4.1 32 230-264 65-96 (105)
179 PRK00676 hemA glutamyl-tRNA re 34.6 79 0.0017 29.6 5.2 36 225-264 169-204 (338)
180 TIGR00393 kpsF KpsF/GutQ famil 34.5 1.2E+02 0.0026 26.5 6.3 79 16-101 2-80 (268)
181 PF14502 HTH_41: Helix-turn-he 34.5 46 0.001 22.0 2.6 22 241-262 18-39 (48)
182 COG1926 Predicted phosphoribos 34.0 77 0.0017 27.8 4.6 90 62-179 120-211 (220)
183 cd01533 4RHOD_Repeat_2 Member 33.5 77 0.0017 23.7 4.2 32 229-263 65-97 (109)
184 COG2065 PyrR Pyrimidine operon 33.4 1.6E+02 0.0034 24.9 6.1 70 5-74 21-104 (179)
185 PF10087 DUF2325: Uncharacteri 32.8 2E+02 0.0044 21.2 7.3 74 17-96 2-76 (97)
186 TIGR03572 WbuZ glycosyl amidat 32.7 2.5E+02 0.0055 24.1 7.9 70 122-210 31-102 (232)
187 cd01526 RHOD_ThiF Member of th 32.6 62 0.0013 24.9 3.6 33 229-264 71-104 (122)
188 cd05005 SIS_PHI Hexulose-6-pho 32.6 2.8E+02 0.0061 22.7 8.5 78 9-99 28-106 (179)
189 TIGR01698 PUNP purine nucleoti 32.2 1.4E+02 0.0031 26.4 6.2 99 17-126 2-110 (237)
190 PRK13810 orotate phosphoribosy 32.2 3.1E+02 0.0067 23.2 8.1 68 23-96 82-150 (187)
191 cd01534 4RHOD_Repeat_3 Member 32.2 89 0.0019 22.6 4.3 31 229-263 55-85 (95)
192 COG1134 TagH ABC-type polysacc 32.2 48 0.001 29.7 3.1 39 231-269 166-207 (249)
193 PF05368 NmrA: NmrA-like famil 32.1 82 0.0018 26.8 4.6 80 11-100 19-99 (233)
194 cd01449 TST_Repeat_2 Thiosulfa 31.8 86 0.0019 23.6 4.3 34 228-264 76-109 (118)
195 PRK10287 thiosulfate:cyanide s 31.1 1.1E+02 0.0023 23.3 4.6 31 230-263 60-90 (104)
196 PRK09219 xanthine phosphoribos 30.5 3.1E+02 0.0067 23.3 7.8 72 23-98 59-147 (189)
197 TIGR03127 RuMP_HxlB 6-phospho 30.1 3.1E+02 0.0067 22.4 7.8 77 10-99 26-103 (179)
198 PRK00258 aroE shikimate 5-dehy 29.6 1.1E+02 0.0024 27.3 5.2 36 227-266 120-155 (278)
199 PF05124 S_layer_C: S-layer li 29.4 1.9E+02 0.0041 25.4 6.4 54 13-76 153-207 (222)
200 PF07788 DUF1626: Protein of u 29.2 1.1E+02 0.0023 21.9 4.0 35 4-40 34-70 (70)
201 PRK00162 glpE thiosulfate sulf 28.2 75 0.0016 23.7 3.3 31 230-263 58-88 (108)
202 PF03859 CG-1: CG-1 domain; I 27.9 47 0.001 26.3 2.1 33 242-274 62-94 (118)
203 PF02875 Mur_ligase_C: Mur lig 27.8 99 0.0021 22.4 3.8 35 232-266 13-48 (91)
204 COG2072 TrkA Predicted flavopr 27.7 89 0.0019 30.2 4.4 43 225-272 170-212 (443)
205 cd01522 RHOD_1 Member of the R 27.4 1E+02 0.0022 23.6 4.0 33 229-264 63-95 (117)
206 cd01080 NAD_bind_m-THF_DH_Cycl 27.1 1.4E+02 0.003 24.9 5.0 34 226-264 40-74 (168)
207 cd04731 HisF The cyclase subun 27.1 3.7E+02 0.008 23.3 8.0 67 122-206 28-95 (243)
208 PRK08105 flavodoxin; Provision 27.0 2.2E+02 0.0048 22.9 6.1 64 16-86 3-73 (149)
209 PLN02469 hydroxyacylglutathion 26.9 88 0.0019 27.9 4.0 40 226-270 18-57 (258)
210 COG0169 AroE Shikimate 5-dehyd 26.9 1.2E+02 0.0027 27.5 5.0 36 226-265 122-157 (283)
211 PF03195 DUF260: Protein of un 26.4 19 0.0004 27.7 -0.4 44 89-133 6-49 (101)
212 TIGR02990 ectoine_eutA ectoine 26.2 40 0.00086 29.9 1.6 89 17-108 10-132 (239)
213 cd05017 SIS_PGI_PMI_1 The memb 26.0 3E+02 0.0064 20.9 7.1 75 17-103 2-77 (119)
214 PRK08202 purine nucleoside pho 26.0 2.5E+02 0.0054 25.2 6.8 113 6-129 12-135 (272)
215 PRK09213 pur operon repressor; 25.9 4.2E+02 0.0092 24.0 8.2 71 22-97 138-225 (271)
216 COG0031 CysK Cysteine synthase 25.3 79 0.0017 29.2 3.4 30 240-270 177-206 (300)
217 COG4122 Predicted O-methyltran 25.3 2.9E+02 0.0063 24.2 6.8 116 91-245 55-173 (219)
218 PRK13940 glutamyl-tRNA reducta 25.3 1.2E+02 0.0025 29.2 4.8 37 225-265 176-212 (414)
219 PRK08564 5'-methylthioadenosin 25.3 72 0.0016 28.8 3.1 99 12-126 5-111 (267)
220 TIGR00201 comF comF family pro 25.1 1.4E+02 0.003 25.1 4.7 38 63-102 149-186 (190)
221 TIGR03581 EF_0839 conserved hy 25.0 63 0.0014 28.5 2.5 29 244-272 135-163 (236)
222 PRK02122 glucosamine-6-phospha 25.0 98 0.0021 31.7 4.3 40 227-270 366-410 (652)
223 PRK08558 adenine phosphoribosy 24.8 4.8E+02 0.01 22.9 10.3 79 16-99 113-207 (238)
224 COG0503 Apt Adenine/guanine ph 24.5 3.5E+02 0.0077 22.6 7.1 69 25-97 64-145 (179)
225 cd02788 MopB_CT_NDH-1_NuoG2-N7 24.3 1.6E+02 0.0035 21.6 4.5 41 32-73 37-77 (96)
226 PF06300 Tsp45I: Tsp45I type I 24.2 8 0.00017 34.1 -3.1 52 80-144 55-106 (261)
227 PF06574 FAD_syn: FAD syntheta 24.2 3.8E+02 0.0083 21.9 7.1 105 67-191 6-115 (157)
228 TIGR01743 purR_Bsub pur operon 23.9 4.4E+02 0.0096 23.8 7.9 71 23-97 137-223 (268)
229 PF13241 NAD_binding_7: Putati 23.7 1.6E+02 0.0035 22.0 4.4 37 226-267 3-39 (103)
230 TIGR03865 PQQ_CXXCW PQQ-depend 23.6 1.4E+02 0.003 24.6 4.3 34 228-264 114-148 (162)
231 TIGR01564 S_layer_MJ S-layer p 23.6 2E+02 0.0044 28.9 6.0 58 12-78 501-558 (571)
232 PF02225 PA: PA domain; Inter 23.4 1.6E+02 0.0034 21.4 4.3 37 225-265 29-65 (101)
233 PF10662 PduV-EutP: Ethanolami 23.3 99 0.0021 25.3 3.3 30 238-267 100-129 (143)
234 cd04822 PA_M28_1_3 PA_M28_1_3: 23.2 1.6E+02 0.0035 24.2 4.6 40 226-265 44-97 (151)
235 PF13399 LytR_C: LytR cell env 23.0 2.5E+02 0.0053 20.2 5.2 23 15-37 43-65 (90)
236 cd04795 SIS SIS domain. SIS (S 22.9 2.1E+02 0.0046 19.8 4.8 77 18-100 2-79 (87)
237 PRK11543 gutQ D-arabinose 5-ph 22.8 2.2E+02 0.0048 25.7 5.9 79 15-100 43-121 (321)
238 PF13738 Pyr_redox_3: Pyridine 22.5 1.3E+02 0.0029 24.7 4.1 37 227-268 164-200 (203)
239 PRK12548 shikimate 5-dehydroge 22.4 1.9E+02 0.0042 26.0 5.4 35 227-265 123-157 (289)
240 PRK01033 imidazole glycerol ph 22.4 4.8E+02 0.01 23.0 7.9 121 123-264 32-172 (258)
241 PRK14027 quinate/shikimate deh 22.2 1.5E+02 0.0033 26.8 4.7 35 227-265 124-158 (283)
242 PRK05562 precorrin-2 dehydroge 22.1 1.3E+02 0.0027 26.5 4.0 39 223-267 18-57 (223)
243 PRK12769 putative oxidoreducta 22.1 1.7E+02 0.0036 29.7 5.4 37 227-267 465-501 (654)
244 PRK12749 quinate/shikimate deh 21.9 1.6E+02 0.0035 26.7 4.8 36 226-265 120-155 (288)
245 COG2185 Sbm Methylmalonyl-CoA 21.9 1.3E+02 0.0029 24.6 3.7 32 67-100 64-96 (143)
246 PRK00748 1-(5-phosphoribosyl)- 21.9 3.7E+02 0.008 22.9 6.9 124 122-264 31-166 (233)
247 PF03681 UPF0150: Uncharacteri 21.6 27 0.00059 22.4 -0.3 19 238-256 23-41 (48)
248 cd05006 SIS_GmhA Phosphoheptos 21.5 4.5E+02 0.0098 21.4 7.8 83 13-99 32-132 (177)
249 PF02698 DUF218: DUF218 domain 21.5 1.3E+02 0.0028 23.9 3.7 40 228-267 68-107 (155)
250 cd04821 PA_M28_1_2 PA_M28_1_2: 21.5 2E+02 0.0043 23.8 4.8 41 226-266 46-101 (157)
251 cd03026 AhpF_NTD_C TRX-GRX-lik 21.4 1.2E+02 0.0027 22.2 3.3 47 5-51 4-56 (89)
252 COG0540 PyrB Aspartate carbamo 21.2 1.8E+02 0.0039 27.0 4.8 39 225-265 153-191 (316)
253 COG0794 GutQ Predicted sugar p 21.1 5.2E+02 0.011 22.4 7.4 79 14-99 39-117 (202)
254 cd04732 HisA HisA. Phosphorib 20.9 4.4E+02 0.0095 22.4 7.2 120 123-264 31-166 (234)
255 cd02792 MopB_CT_Formate-Dh-Na- 20.8 2E+02 0.0044 21.7 4.6 41 31-72 42-82 (122)
256 PRK09271 flavodoxin; Provision 20.7 4.6E+02 0.0099 21.2 8.8 46 25-74 14-59 (160)
257 cd01520 RHOD_YbbB Member of th 20.7 1.7E+02 0.0038 22.6 4.2 31 229-262 85-115 (128)
258 PHA01634 hypothetical protein 20.5 88 0.0019 25.5 2.4 33 226-264 25-57 (156)
259 PRK04194 hypothetical protein; 20.3 1E+02 0.0022 29.5 3.2 30 236-267 255-284 (392)
260 COG0560 SerB Phosphoserine pho 20.2 1.6E+02 0.0034 25.5 4.1 46 5-52 83-129 (212)
261 COG0359 RplI Ribosomal protein 20.1 1.7E+02 0.0037 24.1 4.1 48 15-65 85-137 (148)
262 TIGR00299 conserved hypothetic 20.1 1.1E+02 0.0024 29.3 3.3 30 236-267 254-283 (382)
No 1
>COG0462 PrsA Phosphoribosylpyrophosphate synthetase [Nucleotide transport and metabolism / Amino acid transport and metabolism]
Probab=100.00 E-value=3e-74 Score=517.67 Aligned_cols=248 Identities=26% Similarity=0.364 Sum_probs=231.9
Q ss_pred CCcEEEEecCCcHHHHHHHHHHcCCcceeeeeEeeeCCCcceEEEeecCCCCCCeEEEEEecCCc--hhHHHHHHHHHhc
Q 023987 14 KKQVHLFYCVECEELARKVAAQSDLITLQSINWRNFADGWPNLYINSAHDIRGQHVAFLASFSSP--GVIFEQISVIYAL 91 (274)
Q Consensus 14 ~~~~~i~~~~~~~~la~~ia~~lg~~~~~~~~~~~F~dGE~~~~v~~~~~v~g~~V~iiqs~~~~--~~l~elll~~~a~ 91 (274)
.++|+||+|++|++||++||+.|| ++++++++++||||| ++|+++|+|||+||||+||+++| |+|||||+|++||
T Consensus 2 ~~~~~if~g~s~~~La~~ia~~l~-~~l~~~~~~rF~DGE--~~V~i~EsVrg~dVfI~qs~~~pvnd~lmELLi~idA~ 78 (314)
T COG0462 2 MNNMKIFSGSSNPELAEKIAKRLG-IPLGKVEVKRFPDGE--IYVRIEESVRGKDVFIIQSTSPPVNDNLMELLIMIDAL 78 (314)
T ss_pred CCceEEEECCCCHHHHHHHHHHhC-CCcccceeEEcCCCc--EEEEecccccCCeEEEEeCCCCCcCHHHHHHHHHHHHH
Confidence 468999999999999999999997 999999999999996 57788899999999999999986 7899999999999
Q ss_pred cccCCceEEEEeecCCCCCccccccCCCcccHHHHHHHHhcCCCCCCCCCEEEEEeCCchhhhcccCCCCcccccchHHH
Q 023987 92 PRLFVASFTLVLPFFPTGSFERMEEEGDVATAFTMARILSNIPTSRGGPTSLVIYDIHALQERFYFSDHVLPLFETGIPL 171 (274)
Q Consensus 92 r~~~a~~i~~viPY~~ysRqdr~~~~g~~~~a~~~a~ll~~~~~~~~g~d~ii~vdlH~~~~~~ff~~~~~~l~~~~~~~ 171 (274)
|++||++||+|+||||||||||++++|||+|+|.+|+||+. +|+|+|+|+|+|+++++|||++|++++ .+.+.
T Consensus 79 k~asA~~It~ViPY~gYARQDk~~~~repIsaklvA~lL~~-----aG~drv~TvDlH~~qiqgfFdipvdnl--~a~p~ 151 (314)
T COG0462 79 KRASAKRITAVIPYFGYARQDKAFKPREPISAKLVANLLET-----AGADRVLTVDLHAPQIQGFFDIPVDNL--YAAPL 151 (314)
T ss_pred HhcCCceEEEEeecchhhccCcccCCCCCEeHHHHHHHHHH-----cCCCeEEEEcCCchhhcccCCCccccc--cchHH
Confidence 99999999999999999999988899999999999999996 699999999999999999999999998 69999
Q ss_pred HHHHHhcCCCCCCeEEEecCCChHHHHHHhhc--CCCeEEEEEEEe-CCceEE-EeeeCCCCCCeEEEEeccccchHHHH
Q 023987 172 LKQRLHQLPDANNIVIAFPDDGAWKRFHKMLD--HFPTVVCAKVRE-GDKRIV-RIKEGNPAGCHVVIVDDLVQSGGTLI 247 (274)
Q Consensus 172 la~~l~~~~~~~~~viV~pd~G~~~ra~~~a~--~~~~~~~~k~R~-~~~~i~-~~~~~~v~gk~vlIVDDIi~TG~Tl~ 247 (274)
+++|+.+.+..++++||+||.||++||+.+|+ ++++++++|+|. .++... ..+.||++||+|+|||||||||||+.
T Consensus 152 l~~~~~~~~~~~d~vVVSPD~Ggv~RAr~~A~~L~~~~a~i~K~R~~~~~~v~~~~~~gdV~gk~~iiVDDiIdTgGTi~ 231 (314)
T COG0462 152 LAEYIREKYDLDDPVVVSPDKGGVKRARALADRLGAPLAIIDKRRDSSPNVVEVMNLIGDVEGKDVVIVDDIIDTGGTIA 231 (314)
T ss_pred HHHHHHHhcCCCCcEEECCCccHHHHHHHHHHHhCCCEEEEEEeecCCCCeEEEeecccccCCCEEEEEeccccccHHHH
Confidence 99999887545579999999999999999996 778999999995 555543 46789999999999999999999999
Q ss_pred HHHHHHHhCCCcEEEEEEeceece
Q 023987 248 ECQVLSYLLPAVLLKMCVSEFEWV 271 (274)
Q Consensus 248 ~aa~~Lk~~GA~~V~~~~tH~~~~ 271 (274)
+|++.|+++||++|+++|||+.++
T Consensus 232 ~Aa~~Lk~~GAk~V~a~~tH~vfs 255 (314)
T COG0462 232 KAAKALKERGAKKVYAAATHGVFS 255 (314)
T ss_pred HHHHHHHHCCCCeEEEEEEchhhC
Confidence 999999999999999999999886
No 2
>PLN02297 ribose-phosphate pyrophosphokinase
Probab=100.00 E-value=1.3e-68 Score=489.26 Aligned_cols=258 Identities=78% Similarity=1.226 Sum_probs=235.3
Q ss_pred CCCcEEEEecCCcHHHHHHHHHHc-CCcceeeeeEeeeCCCcceEEEeecCCCCCCeEEEEEecCCchhHHHHHHHHHhc
Q 023987 13 QKKQVHLFYCVECEELARKVAAQS-DLITLQSINWRNFADGWPNLYINSAHDIRGQHVAFLASFSSPGVIFEQISVIYAL 91 (274)
Q Consensus 13 ~~~~~~i~~~~~~~~la~~ia~~l-g~~~~~~~~~~~F~dGE~~~~v~~~~~v~g~~V~iiqs~~~~~~l~elll~~~a~ 91 (274)
..++|+||+|++|++||++||+.| | ++++++++++|||||.+++|++++++||++|||+||+++|+++||||++++||
T Consensus 13 ~~~~~~i~~g~~~~~LA~~ia~~l~g-~~l~~~~~~~FpDGE~~v~v~~~~~vrg~~V~ivqs~~~pd~lmELLl~~dAl 91 (326)
T PLN02297 13 NKKQVHLFYCEETEELARKIAAESDA-IELGSINWRKFPDGFPNLFINNAHGIRGQHVAFLASFSSPAVIFEQLSVIYAL 91 (326)
T ss_pred cCCCeEEEECCCCHHHHHHHHHHhCC-CceeeeEEEECCCCCEEEEEcCCCCcCCCeEEEECCCCCChHHHHHHHHHHHH
Confidence 457899999999999999999996 6 99999999999999999999999999999999999999899999999999999
Q ss_pred cccCCceEEEEeecCCCCCccccccCCCcccHHHHHHHHhcCCCCCCCCCEEEEEeCCchhhhcccCCCCcccccchHHH
Q 023987 92 PRLFVASFTLVLPFFPTGSFERMEEEGDVATAFTMARILSNIPTSRGGPTSLVIYDIHALQERFYFSDHVLPLFETGIPL 171 (274)
Q Consensus 92 r~~~a~~i~~viPY~~ysRqdr~~~~g~~~~a~~~a~ll~~~~~~~~g~d~ii~vdlH~~~~~~ff~~~~~~l~~~~~~~ 171 (274)
|++||++|++|+|||||+||||++++|||++++.+|+||++++.+++|+|+|+++|+|+.++++||+.|+.++++++.+.
T Consensus 92 r~~ga~~i~~ViPY~~YaRQDr~~~~ge~isak~vA~ll~~~~~~~~g~d~vitvDlH~~~~~~fF~~~~~~l~l~a~~~ 171 (326)
T PLN02297 92 PKLFVASFTLVLPFFPTGTSERVEREGDVATAFTLARILSNIPISRGGPTSLVIFDIHALQERFYFGDNVLPCFESGIPL 171 (326)
T ss_pred HHcCCCEEEEEeeCChhhcCCCCCCCCCCchHHHHHHHHhcccccccCCCEEEEEeCCChHHCCccCCcccchhhccHHH
Confidence 99999999999999999999999999999999999999986432225899999999999999999998887665578999
Q ss_pred HHHHHhcCCCCCCeEEEecCCChHHHHHHhhcCCCeEEEEEEEeCCceEEEeeeCCCCCCeEEEEeccccchHHHHHHHH
Q 023987 172 LKQRLHQLPDANNIVIAFPDDGAWKRFHKMLDHFPTVVCAKVREGDKRIVRIKEGNPAGCHVVIVDDLVQSGGTLIECQV 251 (274)
Q Consensus 172 la~~l~~~~~~~~~viV~pd~G~~~ra~~~a~~~~~~~~~k~R~~~~~i~~~~~~~v~gk~vlIVDDIi~TG~Tl~~aa~ 251 (274)
+++|+.+..+.+++++|+||.|+.+|+..++.+.++.+++|.|.+.........++++||+|+|||||+|||+|+.++++
T Consensus 172 l~~~i~~~~~~~~~vvVsPD~Ga~~ra~~~a~~~~~~~~~K~R~g~~~~~~~~~~dv~gr~vlIVDDIidTG~Tl~~aa~ 251 (326)
T PLN02297 172 LKKRLQQLPDSDNIVIAFPDDGAWKRFHKQFEHFPMVVCTKVREGDKRIVRIKEGNPAGRHVVIVDDLVQSGGTLIECQK 251 (326)
T ss_pred HHHHHHhccccCCcEEEecCccHHHHHHHHcCCCCEEEEEeEECCCceEEEecccccCCCeEEEEecccCcHHHHHHHHH
Confidence 99999764225788999999999999999887789999999997544444456789999999999999999999999999
Q ss_pred HHHhCCCcEEEEEEeceece
Q 023987 252 LSYLLPAVLLKMCVSEFEWV 271 (274)
Q Consensus 252 ~Lk~~GA~~V~~~~tH~~~~ 271 (274)
.|+++||++|+++||||.++
T Consensus 252 ~L~~~Ga~~V~~~~THglfs 271 (326)
T PLN02297 252 VLAAHGAAKVSAYVTHGVFP 271 (326)
T ss_pred HHHHCCCcEEEEEEECcccC
Confidence 99999999999999999876
No 3
>PRK04923 ribose-phosphate pyrophosphokinase; Provisional
Probab=100.00 E-value=1.1e-66 Score=477.47 Aligned_cols=249 Identities=22% Similarity=0.271 Sum_probs=227.3
Q ss_pred CCCcEEEEecCCcHHHHHHHHHHcCCcceeeeeEeeeCCCcceEEEeecCCCCCCeEEEEEecCCc--hhHHHHHHHHHh
Q 023987 13 QKKQVHLFYCVECEELARKVAAQSDLITLQSINWRNFADGWPNLYINSAHDIRGQHVAFLASFSSP--GVIFEQISVIYA 90 (274)
Q Consensus 13 ~~~~~~i~~~~~~~~la~~ia~~lg~~~~~~~~~~~F~dGE~~~~v~~~~~v~g~~V~iiqs~~~~--~~l~elll~~~a 90 (274)
..++|+||+|++|++||++||+.|| ++++++++++||||| +++++++++||+||||+||++.| |++||||++++|
T Consensus 3 ~~~~~~i~~g~~~~~La~~ia~~lg-~~l~~~~~~~FpdGE--~~v~i~~~v~g~~V~iiqs~~~p~nd~lmeLl~~~~a 79 (319)
T PRK04923 3 DQRNLLVFSGNANKPLAQSICKELG-VRMGKALVTRFSDGE--VQVEIEESVRRQEVFVIQPTCAPSAENLMELLVLIDA 79 (319)
T ss_pred CCCceEEEECCCCHHHHHHHHHHhC-CceeeeEEEECCCCC--EEEEECCCcCCCeEEEEecCCCCCchHHHHHHHHHHH
Confidence 3578999999999999999999997 999999999999996 57777899999999999999865 689999999999
Q ss_pred ccccCCceEEEEeecCCCCCcccccc-CCCcccHHHHHHHHhcCCCCCCCCCEEEEEeCCchhhhcccCCCCcccccchH
Q 023987 91 LPRLFVASFTLVLPFFPTGSFERMEE-EGDVATAFTMARILSNIPTSRGGPTSLVIYDIHALQERFYFSDHVLPLFETGI 169 (274)
Q Consensus 91 ~r~~~a~~i~~viPY~~ysRqdr~~~-~g~~~~a~~~a~ll~~~~~~~~g~d~ii~vdlH~~~~~~ff~~~~~~l~~~~~ 169 (274)
||++||++|++|+|||||+||||++. +|+|++++.+|+||+. +|+|+|+++|+|+.++++||+.|++++ ++.
T Consensus 80 lr~~~a~~i~~ViPYl~YaRQDr~~~~~~~~isak~va~ll~~-----~g~d~vitvD~H~~~~~~~f~~p~~~l--~~~ 152 (319)
T PRK04923 80 LKRASAASVTAVIPYFGYSRQDRRMRSSRVPITAKVAAKMISA-----MGADRVLTVDLHADQIQGFFDVPVDNV--YAS 152 (319)
T ss_pred HHHcCCcEEEEEeeccccccccccccCCCCCccHHHHHHHHHh-----cCCCEEEEEeCChHHHHhhcCCCceee--eCh
Confidence 99999999999999999999999995 5779999999999986 699999999999999999999999987 689
Q ss_pred HHHHHHHhcCCCCCCeEEEecCCChHHHHHHhhc--C-CCeEEEEEEEeCCce-EEEeeeCCCCCCeEEEEeccccchHH
Q 023987 170 PLLKQRLHQLPDANNIVIAFPDDGAWKRFHKMLD--H-FPTVVCAKVREGDKR-IVRIKEGNPAGCHVVIVDDLVQSGGT 245 (274)
Q Consensus 170 ~~la~~l~~~~~~~~~viV~pd~G~~~ra~~~a~--~-~~~~~~~k~R~~~~~-i~~~~~~~v~gk~vlIVDDIi~TG~T 245 (274)
+++++|+.+.++.+++++|+||.|+++||+.+++ + .++.+++|+|...+. ......++++||+|+|||||+|||+|
T Consensus 153 ~~l~~~i~~~~~~~~~vVVsPD~Ga~~rA~~lA~~L~~~~~~~~~K~R~~~~~~~~~~~~gdv~Gr~viIVDDIidTG~T 232 (319)
T PRK04923 153 PLLLADIWRAYGTDNLIVVSPDVGGVVRARAVAKRLDDADLAIIDKRRPRANVATVMNIIGDVQGKTCVLVDDLVDTAGT 232 (319)
T ss_pred HHHHHHHHHhcCCCCCEEEEECCchHHHHHHHHHHcCCCCEEEeccccCCCCceEEEecccCCCCCEEEEEecccCchHH
Confidence 9999999665446789999999999999999986 4 678999999976542 23345789999999999999999999
Q ss_pred HHHHHHHHHhCCCcEEEEEEeceece
Q 023987 246 LIECQVLSYLLPAVLLKMCVSEFEWV 271 (274)
Q Consensus 246 l~~aa~~Lk~~GA~~V~~~~tH~~~~ 271 (274)
+.++++.||++||++|+++||||.++
T Consensus 233 l~~aa~~Lk~~GA~~V~~~~THgvfs 258 (319)
T PRK04923 233 LCAAAAALKQRGALKVVAYITHPVLS 258 (319)
T ss_pred HHHHHHHHHHCCCCEEEEEEECcccC
Confidence 99999999999999999999999875
No 4
>PTZ00145 phosphoribosylpyrophosphate synthetase; Provisional
Probab=100.00 E-value=5.8e-66 Score=484.57 Aligned_cols=246 Identities=23% Similarity=0.247 Sum_probs=226.6
Q ss_pred CcEEEEecCCcHHHHHHHHHHcCCcceeeeeEeeeCCCcceEEEeecCCCCCCeEEEEEecCCc--hhHHHHHHHHHhcc
Q 023987 15 KQVHLFYCVECEELARKVAAQSDLITLQSINWRNFADGWPNLYINSAHDIRGQHVAFLASFSSP--GVIFEQISVIYALP 92 (274)
Q Consensus 15 ~~~~i~~~~~~~~la~~ia~~lg~~~~~~~~~~~F~dGE~~~~v~~~~~v~g~~V~iiqs~~~~--~~l~elll~~~a~r 92 (274)
++|+||+|++|++||++||+.|| ++++++++++||||| ++|+++++|||+|||||||+++| |+|||||++++|||
T Consensus 118 ~~m~I~sgs~~~~LA~~IA~~Lg-~~l~~~~~~rFpDGE--~~Vri~e~VrG~dV~IVqS~~~pvNd~LmELLllidAlr 194 (439)
T PTZ00145 118 ENAILFSGSSNPLLSKNIADHLG-TILGRVHLKRFADGE--VSMQFLESIRGKDVYIIQPTCPPVNENLIELLLMISTCR 194 (439)
T ss_pred CCeEEEECCCCHHHHHHHHHHhC-CCceeeEEEECCCCC--EEEEECCCcCCCeEEEEecCCCCCcHHHHHHHHHHHHHH
Confidence 67999999999999999999997 999999999999996 57777899999999999999876 67999999999999
Q ss_pred ccCCceEEEEeecCCCCCccccccCCCcccHHHHHHHHhcCCCCCCCCCEEEEEeCCchhhhcccC--CCCcccccchHH
Q 023987 93 RLFVASFTLVLPFFPTGSFERMEEEGDVATAFTMARILSNIPTSRGGPTSLVIYDIHALQERFYFS--DHVLPLFETGIP 170 (274)
Q Consensus 93 ~~~a~~i~~viPY~~ysRqdr~~~~g~~~~a~~~a~ll~~~~~~~~g~d~ii~vdlH~~~~~~ff~--~~~~~l~~~~~~ 170 (274)
++||++|++|+|||||+||||++++|||++++.+|+||+. +|+|+|+++|+|+.++++||+ +|++++ .+.+
T Consensus 195 ~agAkrItlViPYl~YaRQDR~~~~gepIsak~vA~lL~~-----~G~d~VitvDlHs~~i~~fF~~~iPvdnl--~a~~ 267 (439)
T PTZ00145 195 RASAKKITAVIPYYGYARQDRKLSSRVPISAADVARMIEA-----MGVDRVVAIDLHSGQIQGFFGPRVPVDNL--EAQL 267 (439)
T ss_pred HhccCeEEEEeecccchheecccCCCCChhHHHHHHHHHH-----cCCCeEEEEecChHHHHhhcCCCcccccc--cccH
Confidence 9999999999999999999999999999999999999985 699999999999999999997 788887 6889
Q ss_pred HHHHHHhcCCCCCCeEEEecCCChHHHHHHhhc--C------CCeEEEEEEEeCCceEE-EeeeCCCCCCeEEEEecccc
Q 023987 171 LLKQRLHQLPDANNIVIAFPDDGAWKRFHKMLD--H------FPTVVCAKVREGDKRIV-RIKEGNPAGCHVVIVDDLVQ 241 (274)
Q Consensus 171 ~la~~l~~~~~~~~~viV~pd~G~~~ra~~~a~--~------~~~~~~~k~R~~~~~i~-~~~~~~v~gk~vlIVDDIi~ 241 (274)
.+++|+.+. +..++++|+||.|+.+||+.+++ + +++.++.|+|...+.+. ..+.|+++||+|+|||||||
T Consensus 268 ~~a~~i~~~-~l~~pVVVsPD~Ga~~RAr~~A~~L~~~~~~~~~~avl~K~R~~~~~v~~~~lvgdV~Gk~vIIVDDIId 346 (439)
T PTZ00145 268 IGLDYFTKK-DLYKPVIVSPDAGGVYRARKFQDGLNHRGISDCGIAMLIKQRTKPNEIEKMDLVGNVYDSDVIIVDDMID 346 (439)
T ss_pred HHHHHHhhc-CCCccEEEccCcchHHHHHHHHHHhccccccCCCEEEEEeecCCCCceEEEeccCCCCCCEEEEEcceeC
Confidence 999999764 35789999999999999999975 2 57889999998766543 34579999999999999999
Q ss_pred chHHHHHHHHHHHhCCCcEEEEEEeceece
Q 023987 242 SGGTLIECQVLSYLLPAVLLKMCVSEFEWV 271 (274)
Q Consensus 242 TG~Tl~~aa~~Lk~~GA~~V~~~~tH~~~~ 271 (274)
||+|+.+|++.|+++||++|+++||||.++
T Consensus 347 TG~Tl~~aa~~Lk~~GA~~V~~~~THglfs 376 (439)
T PTZ00145 347 TSGTLCEAAKQLKKHGARRVFAFATHGLFS 376 (439)
T ss_pred cHHHHHHHHHHHHHcCCCEEEEEEEcccCC
Confidence 999999999999999999999999999876
No 5
>PRK00553 ribose-phosphate pyrophosphokinase; Provisional
Probab=100.00 E-value=1.2e-65 Score=473.06 Aligned_cols=249 Identities=24% Similarity=0.310 Sum_probs=228.9
Q ss_pred CCCcEEEEecCCcHHHHHHHHHHcCCcceeeeeEeeeCCCcceEEEeecCCCCCCeEEEEEecCCc--hhHHHHHHHHHh
Q 023987 13 QKKQVHLFYCVECEELARKVAAQSDLITLQSINWRNFADGWPNLYINSAHDIRGQHVAFLASFSSP--GVIFEQISVIYA 90 (274)
Q Consensus 13 ~~~~~~i~~~~~~~~la~~ia~~lg~~~~~~~~~~~F~dGE~~~~v~~~~~v~g~~V~iiqs~~~~--~~l~elll~~~a 90 (274)
.+++++||+|++|++||++||+.|| ++++++++++||||| +++++.++|||+||||+||+++| |++||||++++|
T Consensus 6 ~~~~~~i~~~~~~~~La~~ia~~lg-~~l~~~~~~~FpdGE--~~v~i~~~vrg~dV~ivqs~~~p~nd~l~eLll~~~a 82 (332)
T PRK00553 6 DKSNHVIFSLSKAKKLVDSICRKLS-MKPGEIVIQKFADGE--TYIRFDESVRNKDVVIFQSTCSPVNDSLMELLIAIDA 82 (332)
T ss_pred CCCCeEEEECCCCHHHHHHHHHHhC-CceeeeEEEECCCCC--EEEEECCCCCCCEEEEEcCCCCCCchHHHHHHHHHHH
Confidence 3689999999999999999999997 999999999999996 57777899999999999999875 689999999999
Q ss_pred ccccCCceEEEEeecCCCCCccccccCCCcccHHHHHHHHhcCCCCCCCCCEEEEEeCCchhhhcccCCCCcccccchHH
Q 023987 91 LPRLFVASFTLVLPFFPTGSFERMEEEGDVATAFTMARILSNIPTSRGGPTSLVIYDIHALQERFYFSDHVLPLFETGIP 170 (274)
Q Consensus 91 ~r~~~a~~i~~viPY~~ysRqdr~~~~g~~~~a~~~a~ll~~~~~~~~g~d~ii~vdlH~~~~~~ff~~~~~~l~~~~~~ 170 (274)
||++||++|++|+|||||+||||++++|||++++.+|+||+. +|+|+|+++|+|+.++++||+.|++++ .+.+
T Consensus 83 lr~~~a~~i~~ViPYl~YaRQDr~~~~~e~isak~vA~ll~~-----~g~d~vit~DlH~~~i~~~F~ipv~~l--~a~~ 155 (332)
T PRK00553 83 LKRGSAKSITAILPYYGYARQDRKTAGREPITSKLVADLLTK-----AGVTRVTLTDIHSDQTQGFFDIPVDIL--RTYH 155 (332)
T ss_pred HHHcCCCeEEEEeeccccchhhcccCCCCCccHHHHHHHHHh-----cCCCEEEEEeCChHHHHhhcCCCccee--echH
Confidence 999999999999999999999999999999999999999985 699999999999999999999999987 6899
Q ss_pred HHHHHHhcCCCCCCeEEEecCCChHHHHHHhhc--CCCeEEEEEEEeCCceEE-EeeeCCCCCCeEEEEeccccchHHHH
Q 023987 171 LLKQRLHQLPDANNIVIAFPDDGAWKRFHKMLD--HFPTVVCAKVREGDKRIV-RIKEGNPAGCHVVIVDDLVQSGGTLI 247 (274)
Q Consensus 171 ~la~~l~~~~~~~~~viV~pd~G~~~ra~~~a~--~~~~~~~~k~R~~~~~i~-~~~~~~v~gk~vlIVDDIi~TG~Tl~ 247 (274)
++++|+.+..+.+++++|+||.||++||+.+++ +.++.+++|.|...+... ....++++||+|+|||||+|||+|+.
T Consensus 156 ~~~~~~~~~~~~~~~vvVsPD~gg~~rA~~lA~~lg~~~~vi~K~r~~~~~~~~~~~~gdv~Gk~VIIVDDIi~TG~Tl~ 235 (332)
T PRK00553 156 VFLSRVLELLGKKDLVVVSPDYGGVKRARLIAESLELPLAIIDKRRPKHNVAESINVLGEVKNKNCLIVDDMIDTGGTVI 235 (332)
T ss_pred HHHHHHHHhcCCCCeEEEEECCCcHHHHHHHHHHhCCCEEEEEEecCCcceEeeEEeeccCCCCEEEEEeccccchHHHH
Confidence 999999663346789999999999999999987 678889999987654332 34578999999999999999999999
Q ss_pred HHHHHHHhCCCcEEEEEEeceece
Q 023987 248 ECQVLSYLLPAVLLKMCVSEFEWV 271 (274)
Q Consensus 248 ~aa~~Lk~~GA~~V~~~~tH~~~~ 271 (274)
++++.|+++||++|+++||||.++
T Consensus 236 ~aa~~Lk~~GA~~V~~~atHglf~ 259 (332)
T PRK00553 236 AAAKLLKKQKAKKVCVMATHGLFN 259 (332)
T ss_pred HHHHHHHHcCCcEEEEEEEeeecC
Confidence 999999999999999999999875
No 6
>PRK02269 ribose-phosphate pyrophosphokinase; Provisional
Probab=100.00 E-value=1.4e-65 Score=471.27 Aligned_cols=248 Identities=27% Similarity=0.362 Sum_probs=226.3
Q ss_pred CCcEEEEecCCcHHHHHHHHHHcCCcceeeeeEeeeCCCcceEEEeecCCCCCCeEEEEEecCCc--hhHHHHHHHHHhc
Q 023987 14 KKQVHLFYCVECEELARKVAAQSDLITLQSINWRNFADGWPNLYINSAHDIRGQHVAFLASFSSP--GVIFEQISVIYAL 91 (274)
Q Consensus 14 ~~~~~i~~~~~~~~la~~ia~~lg~~~~~~~~~~~F~dGE~~~~v~~~~~v~g~~V~iiqs~~~~--~~l~elll~~~a~ 91 (274)
.++|+||+|++|++||++||+.|| ++++++++++||||| +++++.+++||+||||+||+++| |++||||++++||
T Consensus 3 ~~~~~i~~~~~~~~la~~ia~~lg-~~l~~~~~~~FpdGE--~~v~i~~~vrg~dV~iv~s~~~~~nd~lmelll~~~al 79 (320)
T PRK02269 3 YSDLKLFALSSNKELAEKVAQEIG-IELGKSSVRQFSDGE--IQVNIEESIRGHHVFILQSTSSPVNDNLMEILIMVDAL 79 (320)
T ss_pred CCCeEEEECCCCHHHHHHHHHHhC-CceeeeEEEECCCCC--EEEEECCCCCCCEEEEEecCCCCccchHHHHHHHHHHH
Confidence 457999999999999999999997 999999999999996 57777899999999999999875 6799999999999
Q ss_pred cccCCceEEEEeecCCCCCccccccCCCcccHHHHHHHHhcCCCCCCCCCEEEEEeCCchhhhcccCCCCcccccchHHH
Q 023987 92 PRLFVASFTLVLPFFPTGSFERMEEEGDVATAFTMARILSNIPTSRGGPTSLVIYDIHALQERFYFSDHVLPLFETGIPL 171 (274)
Q Consensus 92 r~~~a~~i~~viPY~~ysRqdr~~~~g~~~~a~~~a~ll~~~~~~~~g~d~ii~vdlH~~~~~~ff~~~~~~l~~~~~~~ 171 (274)
|++||++|++|+|||||+||||++++|||+++|.+|+||+. +|+|+|+++|+|+.++++||+.|++++ .+.++
T Consensus 80 r~~~a~~i~~V~PYl~YaRQDr~~~~~e~isak~~a~ll~~-----~g~d~vit~D~H~~~~~~~f~~p~~~l--~~~p~ 152 (320)
T PRK02269 80 KRASAESINVVMPYYGYARQDRKARSREPITSKLVANMLEV-----AGVDRLLTVDLHAAQIQGFFDIPVDHL--MGAPL 152 (320)
T ss_pred HHhCCCeEEEEEeccccchhhcccCCCCCchHHHHHHHHhh-----cCCCEEEEECCChHHHhccccCCchhh--hhHHH
Confidence 99999999999999999999999999999999999999986 699999999999999999999999887 78999
Q ss_pred HHHHHhcC-CCCCCeEEEecCCChHHHHHHhhc--CCCeEEEEEEEeCC--c-eEEEeeeCCCCCCeEEEEeccccchHH
Q 023987 172 LKQRLHQL-PDANNIVIAFPDDGAWKRFHKMLD--HFPTVVCAKVREGD--K-RIVRIKEGNPAGCHVVIVDDLVQSGGT 245 (274)
Q Consensus 172 la~~l~~~-~~~~~~viV~pd~G~~~ra~~~a~--~~~~~~~~k~R~~~--~-~i~~~~~~~v~gk~vlIVDDIi~TG~T 245 (274)
+++|+.+. ++.+++++|+||.||++||+.+++ +.++.+++|.|... + .......++++||+|||||||+|||+|
T Consensus 153 l~~~i~~~~~~~~~~vvVsPd~G~~~~A~~lA~~lg~~~~~~~k~r~~~~~~~~~~~~~~gdv~Gr~viIVDDIidTG~T 232 (320)
T PRK02269 153 IADYFDRRGLVGDDVVVVSPDHGGVTRARKLAQFLKTPIAIIDKRRSVDKMNTSEVMNIIGNVKGKKCILIDDMIDTAGT 232 (320)
T ss_pred HHHHHHHhCCCCCCcEEEEECccHHHHHHHHHHHhCCCEEEEEecccCCCCceeEEEEeccccCCCEEEEEeeecCcHHH
Confidence 99999764 334789999999999999999997 67888888887632 2 222345789999999999999999999
Q ss_pred HHHHHHHHHhCCCcEEEEEEeceece
Q 023987 246 LIECQVLSYLLPAVLLKMCVSEFEWV 271 (274)
Q Consensus 246 l~~aa~~Lk~~GA~~V~~~~tH~~~~ 271 (274)
+.++++.|+++||++|+++||||.++
T Consensus 233 l~~aa~~Lk~~GA~~V~~~~tHglf~ 258 (320)
T PRK02269 233 ICHAADALAEAGATEVYASCTHPVLS 258 (320)
T ss_pred HHHHHHHHHHCCCCEEEEEEECcccC
Confidence 99999999999999999999999875
No 7
>PRK02458 ribose-phosphate pyrophosphokinase; Provisional
Probab=100.00 E-value=2.8e-65 Score=469.32 Aligned_cols=250 Identities=24% Similarity=0.360 Sum_probs=226.8
Q ss_pred CCCCcEEEEecCCcHHHHHHHHHHcCCcceeeeeEeeeCCCcceEEEeecCCCCCCeEEEEEecCCc--hhHHHHHHHHH
Q 023987 12 SQKKQVHLFYCVECEELARKVAAQSDLITLQSINWRNFADGWPNLYINSAHDIRGQHVAFLASFSSP--GVIFEQISVIY 89 (274)
Q Consensus 12 ~~~~~~~i~~~~~~~~la~~ia~~lg~~~~~~~~~~~F~dGE~~~~v~~~~~v~g~~V~iiqs~~~~--~~l~elll~~~ 89 (274)
...++|+||+|++|++||++||+.|| ++++++++++||||| ++++++++++|+||+|+||++.| |++||||++++
T Consensus 5 ~~~~~~~i~~~~~~~~la~~ia~~lg-~~l~~~~~~~FpdGE--~~v~i~~~v~g~dV~ii~s~~~~~nd~l~eLll~~~ 81 (323)
T PRK02458 5 YADKQIKLFSLNSNLEIAEKIAQAAG-VPLGKLSSRQFSDGE--IMINIEESVRGDDIYIIQSTSFPVNDHLWELLIMID 81 (323)
T ss_pred cCCCCeEEEECCCCHHHHHHHHHHhC-CceeeeEEEECCCCC--EEEEecCCcCCCeEEEEecCCCCCchHHHHHHHHHH
Confidence 34678999999999999999999997 999999999999996 57777899999999999999765 67999999999
Q ss_pred hccccCCceEEEEeecCCCCCccccccCCCcccHHHHHHHHhcCCCCCCCCCEEEEEeCCchhhhcccCCCCcccccchH
Q 023987 90 ALPRLFVASFTLVLPFFPTGSFERMEEEGDVATAFTMARILSNIPTSRGGPTSLVIYDIHALQERFYFSDHVLPLFETGI 169 (274)
Q Consensus 90 a~r~~~a~~i~~viPY~~ysRqdr~~~~g~~~~a~~~a~ll~~~~~~~~g~d~ii~vdlH~~~~~~ff~~~~~~l~~~~~ 169 (274)
|||++||++|++|+|||||+||||++++|||++++.+|+||+. +|+|+|+++|+|+.++++||+.|++++ .+.
T Consensus 82 alr~~~a~~i~lViPYl~YaRQDr~~~~ge~isak~~a~lL~~-----~g~d~vitvD~H~~~i~~~F~~p~~nl--~~~ 154 (323)
T PRK02458 82 ACKRASANTVNVVLPYFGYARQDRIAKPREPITAKLVANMLVK-----AGVDRVLTLDLHAVQVQGFFDIPVDNL--FTV 154 (323)
T ss_pred HHHHcCCceEEEEEeccccchhhcccCCCCCchHHHHHHHHhh-----cCCCeEEEEecCcHHhhccccCCceEE--EEH
Confidence 9999999999999999999999999999999999999999985 699999999999999999999999987 789
Q ss_pred HHHHHHHhcC-CCCCCeEEEecCCChHHHHHHhhc--CCCeEEEEEEEeCCceEEEeeeCCCCCCeEEEEeccccchHHH
Q 023987 170 PLLKQRLHQL-PDANNIVIAFPDDGAWKRFHKMLD--HFPTVVCAKVREGDKRIVRIKEGNPAGCHVVIVDDLVQSGGTL 246 (274)
Q Consensus 170 ~~la~~l~~~-~~~~~~viV~pd~G~~~ra~~~a~--~~~~~~~~k~R~~~~~i~~~~~~~v~gk~vlIVDDIi~TG~Tl 246 (274)
+++++|+.+. ++.+++++|+||.||++||+.+++ +.++.++++.|...........++++||+|+|||||+|||+|+
T Consensus 155 p~~~~~l~~~~~~~~~~vvV~pd~Ga~~~A~~la~~L~~~~~~~~~~r~~~~~~~~~i~gdV~gk~viIVDDIidTG~Tl 234 (323)
T PRK02458 155 PLFAKHYCKKGLSGSDVVVVSPKNSGIKRARSLAEYLDAPIAIIDYAQDDSEREEGYIIGDVAGKKAILIDDILNTGKTF 234 (323)
T ss_pred HHHHHHHHHhCCCCCceEEEEECCChHHHHHHHHHHhCCCEEEEEEecCCCcceeeccccccCCCEEEEEcceeCcHHHH
Confidence 9999999664 334789999999999999999987 6788888876644332223457899999999999999999999
Q ss_pred HHHHHHHHhCCCcEEEEEEeceece
Q 023987 247 IECQVLSYLLPAVLLKMCVSEFEWV 271 (274)
Q Consensus 247 ~~aa~~Lk~~GA~~V~~~~tH~~~~ 271 (274)
.++++.|+++||++|+++||||.++
T Consensus 235 ~~aa~~Lk~~GA~~V~~~~tHgif~ 259 (323)
T PRK02458 235 AEAAKIVEREGATEIYAVASHGLFA 259 (323)
T ss_pred HHHHHHHHhCCCCcEEEEEEChhcC
Confidence 9999999999999999999999875
No 8
>PRK07199 phosphoribosylpyrophosphate synthetase; Provisional
Probab=100.00 E-value=7.8e-65 Score=462.73 Aligned_cols=243 Identities=22% Similarity=0.240 Sum_probs=221.4
Q ss_pred cEEEEecCCcHHHHHHHHHHcCCcceeeeeEeeeCCCcceEEEeecCCCCCCeEEEEEecCCc-hhHHHHHHHHHhcccc
Q 023987 16 QVHLFYCVECEELARKVAAQSDLITLQSINWRNFADGWPNLYINSAHDIRGQHVAFLASFSSP-GVIFEQISVIYALPRL 94 (274)
Q Consensus 16 ~~~i~~~~~~~~la~~ia~~lg~~~~~~~~~~~F~dGE~~~~v~~~~~v~g~~V~iiqs~~~~-~~l~elll~~~a~r~~ 94 (274)
+++||+|++|++||++||+.|| ++++++++++||||| .++++.++|||+||||+||+++| +++||||++++|||++
T Consensus 2 ~~~i~~~~~~~~la~~ia~~lg-~~~~~~~~~~F~dGE--~~v~i~~~v~g~~V~ivqs~~~~n~~l~elll~~~alr~~ 78 (301)
T PRK07199 2 QPLLLALPGNEAAAGRLAAALG-VEVGRIELHRFPDGE--SYVRLDSPVAGRTVVLVCSLDRPDEKLLPLLFAAEAAREL 78 (301)
T ss_pred ceEEEECCCCHHHHHHHHHHhC-CceeeeEEEECCCCC--EEEEECCCCCCCEEEEECCCCCCcHHHHHHHHHHHHHHHc
Confidence 4789999999999999999997 999999999999996 57777799999999999999875 6799999999999999
Q ss_pred CCceEEEEeecCCCCCccccccCCCcccHHHHHHHHhcCCCCCCCCCEEEEEeCCc---hhhhcccCCCCcccccchHHH
Q 023987 95 FVASFTLVLPFFPTGSFERMEEEGDVATAFTMARILSNIPTSRGGPTSLVIYDIHA---LQERFYFSDHVLPLFETGIPL 171 (274)
Q Consensus 95 ~a~~i~~viPY~~ysRqdr~~~~g~~~~a~~~a~ll~~~~~~~~g~d~ii~vdlH~---~~~~~ff~~~~~~l~~~~~~~ 171 (274)
||++|++|+||||||||||++++|||+++|.+|+||+. |+|+|+++|+|+ .+++|||++|++++ ++.+.
T Consensus 79 ~a~~i~~ViPY~~YaRqDr~~~~ge~isak~vA~ll~~------~~d~vit~DlH~~~~~~~~~~f~ip~~nl--~~~~~ 150 (301)
T PRK07199 79 GARRVGLVAPYLAYMRQDIAFHPGEAISQRHFARLLSG------SFDRLVTVDPHLHRYPSLSEVYPIPAVVL--SAAPA 150 (301)
T ss_pred CCCeEEEEeecccccccccccCCCCCccHHHHHHHHHh------hcCeEEEEeccchhhHHhcCcccCCcccc--chHHH
Confidence 99999999999999999999999999999999999983 899999999998 56789999999887 68999
Q ss_pred HHHHHhcCCCCCCeEEEecCCChHHHHHHhhc--CCCeEEEEEEEeCCceEEE--eeeCCCCCCeEEEEeccccchHHHH
Q 023987 172 LKQRLHQLPDANNIVIAFPDDGAWKRFHKMLD--HFPTVVCAKVREGDKRIVR--IKEGNPAGCHVVIVDDLVQSGGTLI 247 (274)
Q Consensus 172 la~~l~~~~~~~~~viV~pd~G~~~ra~~~a~--~~~~~~~~k~R~~~~~i~~--~~~~~v~gk~vlIVDDIi~TG~Tl~ 247 (274)
+++|+.+. .+++++|+||.|+.+|++.+++ +.++.+++|.|+..+.... ...++++||+|+|||||+|||+|+.
T Consensus 151 la~~l~~~--~~~~vVVsPd~g~~~~a~~la~~l~~~~~~~~K~R~~~~~~~~~~~~~~~v~Gr~vIIVDDIidTG~Tl~ 228 (301)
T PRK07199 151 IAAWIRAH--VPRPLLIGPDEESEQWVAAVAERAGAPHAVLRKTRHGDRDVEISLPDAAPWAGRTPVLVDDIVSTGRTLI 228 (301)
T ss_pred HHHHHHhc--CCCcEEEEeCCChHHHHHHHHHHhCCCEEEEEEEecCCCeEEEEeccCcccCCCEEEEEecccCcHHHHH
Confidence 99999875 5688999999999999999986 6788889999977653322 2245799999999999999999999
Q ss_pred HHHHHHHhCCCcEEEEEEeceece
Q 023987 248 ECQVLSYLLPAVLLKMCVSEFEWV 271 (274)
Q Consensus 248 ~aa~~Lk~~GA~~V~~~~tH~~~~ 271 (274)
++++.||++||++|+++||||.++
T Consensus 229 ~aa~~Lk~~GA~~V~~~~tHgvfs 252 (301)
T PRK07199 229 EAARQLRAAGAASPDCVVVHALFA 252 (301)
T ss_pred HHHHHHHHCCCcEEEEEEEeeeCC
Confidence 999999999999999999999875
No 9
>PRK02812 ribose-phosphate pyrophosphokinase; Provisional
Probab=100.00 E-value=4.1e-64 Score=462.16 Aligned_cols=250 Identities=24% Similarity=0.355 Sum_probs=228.6
Q ss_pred hCCCCcEEEEecCCcHHHHHHHHHHcCCcceeeeeEeeeCCCcceEEEeecCCCCCCeEEEEEecCCc--hhHHHHHHHH
Q 023987 11 KSQKKQVHLFYCVECEELARKVAAQSDLITLQSINWRNFADGWPNLYINSAHDIRGQHVAFLASFSSP--GVIFEQISVI 88 (274)
Q Consensus 11 ~~~~~~~~i~~~~~~~~la~~ia~~lg~~~~~~~~~~~F~dGE~~~~v~~~~~v~g~~V~iiqs~~~~--~~l~elll~~ 88 (274)
.+..++|+||+|++|++||++||+.|| ++++++++++||||| .+++++++|||+||||+||++.| |++||||+++
T Consensus 16 ~~~~~~~~i~~g~~~~~la~~ia~~lg-~~l~~~~~~~FpDGE--~~v~i~~~vrg~~V~ivqs~~~p~nd~l~eLll~~ 92 (330)
T PRK02812 16 LSDNNRLRLFSGSSNPALAQEVARYLG-MDLGPMIRKRFADGE--LYVQIQESIRGCDVYLIQPTCAPVNDHLMELLIMV 92 (330)
T ss_pred ccCCCCEEEEECCCCHHHHHHHHHHhC-CCceeeEEEECCCCC--EEEEeCCCCCCCEEEEECCCCCCccHHHHHHHHHH
Confidence 455678999999999999999999997 999999999999996 57777899999999999998766 6799999999
Q ss_pred HhccccCCceEEEEeecCCCCCccccccCCCcccHHHHHHHHhcCCCCCCCCCEEEEEeCCchhhhcccCCCCcccccch
Q 023987 89 YALPRLFVASFTLVLPFFPTGSFERMEEEGDVATAFTMARILSNIPTSRGGPTSLVIYDIHALQERFYFSDHVLPLFETG 168 (274)
Q Consensus 89 ~a~r~~~a~~i~~viPY~~ysRqdr~~~~g~~~~a~~~a~ll~~~~~~~~g~d~ii~vdlH~~~~~~ff~~~~~~l~~~~ 168 (274)
+|||++||++|++|+|||||+||||++++|||+++|.+|+||+. +|+|+|+++|+|+.++++||++|++++ ++
T Consensus 93 ~alr~~ga~ri~~ViPYl~YaRQDr~~~~~e~isak~vA~lL~~-----~g~d~vitvDlH~~~~~~fF~ipv~nl--~~ 165 (330)
T PRK02812 93 DACRRASARQITAVIPYYGYARADRKTAGRESITAKLVANLITK-----AGADRVLAMDLHSAQIQGYFDIPCDHV--YG 165 (330)
T ss_pred HHHHHhCCceEEEEEecccccccccccCCCCCchHHHHHHHHHh-----cCCCEEEEEECCchHHcCccCCCceee--eC
Confidence 99999999999999999999999999999999999999999995 699999999999999999999999887 79
Q ss_pred HHHHHHHHhcCCCCCCeEEEecCCChHHHHHHhhc---CCCeEEEEEEEeCCceE-EEeeeCCCCCCeEEEEeccccchH
Q 023987 169 IPLLKQRLHQLPDANNIVIAFPDDGAWKRFHKMLD---HFPTVVCAKVREGDKRI-VRIKEGNPAGCHVVIVDDLVQSGG 244 (274)
Q Consensus 169 ~~~la~~l~~~~~~~~~viV~pd~G~~~ra~~~a~---~~~~~~~~k~R~~~~~i-~~~~~~~v~gk~vlIVDDIi~TG~ 244 (274)
.+.+++||.+. +.+++++|+||.||.+||+.+++ +.++.+++|+|...+.. .....++++||+|+|||||+|||+
T Consensus 166 ~~~l~~~i~~~-~~~~~vvVsPD~gg~~ra~~~A~~L~~~~~~~~~k~R~~~~~~~~~~~~~~v~g~~viiVDDii~TG~ 244 (330)
T PRK02812 166 SPVLLDYLASK-NLEDIVVVSPDVGGVARARAFAKKLNDAPLAIIDKRRQAHNVAEVLNVIGDVKGKTAILVDDMIDTGG 244 (330)
T ss_pred hHHHHHHHHhc-CCCCeEEEEECCccHHHHHHHHHHhCCCCEEEEEeeccCCceeeeEeccccCCCCEEEEEccccCcHH
Confidence 99999999764 36789999999999999999986 36888899998765432 234567999999999999999999
Q ss_pred HHHHHHHHHHhCCCcEEEEEEeceece
Q 023987 245 TLIECQVLSYLLPAVLLKMCVSEFEWV 271 (274)
Q Consensus 245 Tl~~aa~~Lk~~GA~~V~~~~tH~~~~ 271 (274)
|+.++++.|+++||++|++++||+.++
T Consensus 245 T~~~a~~~L~~~Ga~~v~~~~tH~v~s 271 (330)
T PRK02812 245 TICEGARLLRKEGAKQVYACATHAVFS 271 (330)
T ss_pred HHHHHHHHHhccCCCeEEEEEEcccCC
Confidence 999999999999999999999999865
No 10
>KOG1448 consensus Ribose-phosphate pyrophosphokinase [Nucleotide transport and metabolism; Amino acid transport and metabolism]
Probab=100.00 E-value=5.4e-64 Score=442.35 Aligned_cols=247 Identities=26% Similarity=0.365 Sum_probs=228.5
Q ss_pred CcEEEEecCCcHHHHHHHHHHcCCcceeeeeEeeeCCCcceEEEeecCCCCCCeEEEEEecCCc--hhHHHHHHHHHhcc
Q 023987 15 KQVHLFYCVECEELARKVAAQSDLITLQSINWRNFADGWPNLYINSAHDIRGQHVAFLASFSSP--GVIFEQISVIYALP 92 (274)
Q Consensus 15 ~~~~i~~~~~~~~la~~ia~~lg~~~~~~~~~~~F~dGE~~~~v~~~~~v~g~~V~iiqs~~~~--~~l~elll~~~a~r 92 (274)
++++||+|++|++||++||++|| ++++++++++|+||| +.|++.++|||+|||++||+++| |+|||||.|++||+
T Consensus 2 ~~i~lf~g~shp~La~~I~~~lg-i~l~~v~~kkf~nge--~~v~i~esvR~~dV~iiqsgsg~ind~lmELLI~I~ac~ 78 (316)
T KOG1448|consen 2 KNIKLFSGDSHPELAERIAARLG-IELGKVNLKKFSNGE--TSVQIGESVRGEDVYIIQSGSGPINDNLMELLIMINACK 78 (316)
T ss_pred CceEEEcCCCCHHHHHHHHHHhC-CCcceeeeEEccCCc--EEEecccccccCcEEEeccCCCcchHHHHHHHHHHHhcc
Confidence 57899999999999999999998 999999999999997 57788899999999999999998 89999999999999
Q ss_pred ccCCceEEEEeecCCCCCccccccCCCcccHHHHHHHHhcCCCCCCCCCEEEEEeCCchhhhcccCCCCcccccchHHHH
Q 023987 93 RLFVASFTLVLPFFPTGSFERMEEEGDVATAFTMARILSNIPTSRGGPTSLVIYDIHALQERFYFSDHVLPLFETGIPLL 172 (274)
Q Consensus 93 ~~~a~~i~~viPY~~ysRqdr~~~~g~~~~a~~~a~ll~~~~~~~~g~d~ii~vdlH~~~~~~ff~~~~~~l~~~~~~~l 172 (274)
++++++||+|+|||||+||||+.+.+.+++||.+|+||.. +|+|++|++|+|..|++|||.+||+++ ...+.+
T Consensus 79 ~asa~~vTaViP~Fpyarq~~k~~~r~~i~aklVanlls~-----aG~dhvItmDlHa~Q~qgfF~ipVdnl--y~~p~~ 151 (316)
T KOG1448|consen 79 RASASRVTAVIPYFPYARQDKKDKSRAPILAKLVANLLSS-----AGADHVITMDLHASQIQGFFDIPVDNL--YAEPAV 151 (316)
T ss_pred hhhhheeEEeccCCccccchhhhhhhhhHHHHHHHhhhhc-----cCCceEEEecccchhhCceeeccchhh--ccchHH
Confidence 9999999999999999999999999999999999999986 699999999999999999999999998 688999
Q ss_pred HHHHhcC-CCCCCeEEEecCCChHHHHHHhhcCCC--eEEEEEEEeCCceE--EEeeeCCCCCCeEEEEeccccchHHHH
Q 023987 173 KQRLHQL-PDANNIVIAFPDDGAWKRFHKMLDHFP--TVVCAKVREGDKRI--VRIKEGNPAGCHVVIVDDLVQSGGTLI 247 (274)
Q Consensus 173 a~~l~~~-~~~~~~viV~pd~G~~~ra~~~a~~~~--~~~~~k~R~~~~~i--~~~~~~~v~gk~vlIVDDIi~TG~Tl~ 247 (274)
.+|++.. .++++.++|+||.||++|++.+++.++ ++.++|+|....++ ...+.||++||.++|||||++|+||+.
T Consensus 152 l~~ir~~~~~~~~~vivSPdaGgaKR~~s~ad~l~~~fali~ker~k~~~v~~~m~LVGDv~gkvailVDDm~dt~GTl~ 231 (316)
T KOG1448|consen 152 LNYIRENIPDSENAVIVSPDAGGAKRVTSLADRLNLDFALIHKERRKANEVDIRMVLVGDVKGKVAILVDDMADTCGTLI 231 (316)
T ss_pred HHHHHhhCCCccceEEECCCcchhhhhHHHHHhhcchhhhhhhhhhcccccceEEEEEeccCCcEEEEecccccccchHH
Confidence 9999875 368899999999999999999998554 45567777665433 346799999999999999999999999
Q ss_pred HHHHHHHhCCCcEEEEEEeceece
Q 023987 248 ECQVLSYLLPAVLLKMCVSEFEWV 271 (274)
Q Consensus 248 ~aa~~Lk~~GA~~V~~~~tH~~~~ 271 (274)
++++.|.+.||++|++++|||.++
T Consensus 232 ~aa~~L~~~GA~kV~a~~THgVfs 255 (316)
T KOG1448|consen 232 KAADKLLEHGAKKVYAIVTHGVFS 255 (316)
T ss_pred HHHHHHHhcCCceEEEEEcceecc
Confidence 999999999999999999999886
No 11
>PRK01259 ribose-phosphate pyrophosphokinase; Provisional
Probab=100.00 E-value=2.6e-62 Score=447.87 Aligned_cols=244 Identities=25% Similarity=0.309 Sum_probs=224.7
Q ss_pred EEEEecCCcHHHHHHHHHHcCCcceeeeeEeeeCCCcceEEEeecCCCCCCeEEEEEecCCc--hhHHHHHHHHHhcccc
Q 023987 17 VHLFYCVECEELARKVAAQSDLITLQSINWRNFADGWPNLYINSAHDIRGQHVAFLASFSSP--GVIFEQISVIYALPRL 94 (274)
Q Consensus 17 ~~i~~~~~~~~la~~ia~~lg~~~~~~~~~~~F~dGE~~~~v~~~~~v~g~~V~iiqs~~~~--~~l~elll~~~a~r~~ 94 (274)
|+||+|++|++||++||+.|| ++++++++++||||| ++++++++++|+||+|+||++.| |++|||+++++|||++
T Consensus 1 ~~i~~~~~~~~la~~ia~~lg-~~~~~~~~~~FpdGE--~~vri~~~v~g~~V~ii~s~~~~~nd~l~eLll~~~alr~~ 77 (309)
T PRK01259 1 MKLFAGNANPELAEKIAKYLG-IPLGKASVGRFSDGE--ISVEINENVRGKDVFIIQSTCAPTNDNLMELLIMIDALKRA 77 (309)
T ss_pred CEEEECCCCHHHHHHHHHHhC-CceeeeEEEECCCCC--EEEEeCCCCCCCEEEEECCCCCCCcHHHHHHHHHHHHHHHc
Confidence 579999999999999999997 999999999999996 57777899999999999999765 6799999999999999
Q ss_pred CCceEEEEeecCCCCCccccccCCCcccHHHHHHHHhcCCCCCCCCCEEEEEeCCchhhhcccCCCCcccccchHHHHHH
Q 023987 95 FVASFTLVLPFFPTGSFERMEEEGDVATAFTMARILSNIPTSRGGPTSLVIYDIHALQERFYFSDHVLPLFETGIPLLKQ 174 (274)
Q Consensus 95 ~a~~i~~viPY~~ysRqdr~~~~g~~~~a~~~a~ll~~~~~~~~g~d~ii~vdlH~~~~~~ff~~~~~~l~~~~~~~la~ 174 (274)
|+++|++|+||||||||||++++|||++++.+|+||+. +|+|+|+++|+|+.++++||+.|++++ .+.+++++
T Consensus 78 ga~~i~lViPYl~YsRQDr~~~~ge~isak~~a~lL~~-----~g~d~vitvD~H~~~~~~~f~~p~~~l--~~~~~l~~ 150 (309)
T PRK01259 78 SAGRITAVIPYFGYARQDRKARSRVPITAKLVANLLET-----AGADRVLTMDLHADQIQGFFDIPVDNL--YGSPILLE 150 (309)
T ss_pred CCceEEEEeeccccchhhhhhccCCCchHHHHHHHHhh-----cCCCEEEEEcCChHHHcCcCCCCceee--eecHHHHH
Confidence 99999999999999999999999999999999999996 699999999999999999999999887 68999999
Q ss_pred HHhcCCCCCCeEEEecCCChHHHHHHhhc--CCCeEEEEEEEeCCceE-EEeeeCCCCCCeEEEEeccccchHHHHHHHH
Q 023987 175 RLHQLPDANNIVIAFPDDGAWKRFHKMLD--HFPTVVCAKVREGDKRI-VRIKEGNPAGCHVVIVDDLVQSGGTLIECQV 251 (274)
Q Consensus 175 ~l~~~~~~~~~viV~pd~G~~~ra~~~a~--~~~~~~~~k~R~~~~~i-~~~~~~~v~gk~vlIVDDIi~TG~Tl~~aa~ 251 (274)
|+.+. +.+++++|+||.||+.||+.+++ +.++.+++|.|..++.. .....++++||+|+|||||+|||+|+.++++
T Consensus 151 ~i~~~-~~~~~vvv~pd~Gg~~~A~~la~~Lg~~~~~~~k~r~~~~~~~~~~~~~~~~g~~vliVDDii~TG~T~~~a~~ 229 (309)
T PRK01259 151 DIKQK-NLENLVVVSPDVGGVVRARALAKRLDADLAIIDKRRPRANVSEVMNIIGDVEGRDCILVDDMIDTAGTLCKAAE 229 (309)
T ss_pred HHHhc-CCCCcEEEEECCCcHHHHHHHHHHhCCCEEEEEeecccceeEEEEeecccCCCCEEEEEecccCcHHHHHHHHH
Confidence 99765 46789999999999999999987 77888889988765533 2345689999999999999999999999999
Q ss_pred HHHhCCCcEEEEEEeceece
Q 023987 252 LSYLLPAVLLKMCVSEFEWV 271 (274)
Q Consensus 252 ~Lk~~GA~~V~~~~tH~~~~ 271 (274)
.|+++||++|+++|||+.++
T Consensus 230 ~l~~~Ga~~v~~~~tH~i~~ 249 (309)
T PRK01259 230 ALKERGAKSVYAYATHPVLS 249 (309)
T ss_pred HHHccCCCEEEEEEEeeeCC
Confidence 99999999999999999875
No 12
>PRK03092 ribose-phosphate pyrophosphokinase; Provisional
Probab=100.00 E-value=1.8e-62 Score=447.84 Aligned_cols=234 Identities=24% Similarity=0.361 Sum_probs=214.5
Q ss_pred HHHHHHHHcCCcceeeeeEeeeCCCcceEEEeecCCCCCCeEEEEEecCCc--hhHHHHHHHHHhccccCCceEEEEeec
Q 023987 28 LARKVAAQSDLITLQSINWRNFADGWPNLYINSAHDIRGQHVAFLASFSSP--GVIFEQISVIYALPRLFVASFTLVLPF 105 (274)
Q Consensus 28 la~~ia~~lg~~~~~~~~~~~F~dGE~~~~v~~~~~v~g~~V~iiqs~~~~--~~l~elll~~~a~r~~~a~~i~~viPY 105 (274)
||++||+.|| ++++++++++||||| ++++++++|+|+||||+||+++| |++||||++++|||++||++|++|+||
T Consensus 1 la~~ia~~l~-~~l~~~~~~~F~DGE--~~vri~~~v~g~~v~ii~s~~~p~nd~l~ell~~~~a~r~~~a~~i~~ViPY 77 (304)
T PRK03092 1 LAEEVAKELG-VEVTPTTAYDFANGE--IYVRFEESVRGCDAFVLQSHTAPINKWLMEQLIMIDALKRASAKRITVVLPF 77 (304)
T ss_pred CHHHHHHHhC-CceeeeEEEECCCCC--EEEEECCCCCCCEEEEEeCCCCCCcHHHHHHHHHHHHHHHcCCCeEEEEEec
Confidence 6899999997 999999999999996 57777899999999999999876 679999999999999999999999999
Q ss_pred CCCCCccccccCCCcccHHHHHHHHhcCCCCCCCCCEEEEEeCCchhhhcccCCCCcccccchHHHHHHHHhcCCCCCCe
Q 023987 106 FPTGSFERMEEEGDVATAFTMARILSNIPTSRGGPTSLVIYDIHALQERFYFSDHVLPLFETGIPLLKQRLHQLPDANNI 185 (274)
Q Consensus 106 ~~ysRqdr~~~~g~~~~a~~~a~ll~~~~~~~~g~d~ii~vdlH~~~~~~ff~~~~~~l~~~~~~~la~~l~~~~~~~~~ 185 (274)
|||+||||++++|||++++.+|+||+. +|+|+|+++|+|+.++++||+.|++++ ++.+.+++||.+.++.+++
T Consensus 78 l~YaRQDr~~~~~e~isak~va~lL~~-----~g~d~vitvD~H~~~~~~~f~~p~~~l--~~~~~la~~i~~~~~~~~~ 150 (304)
T PRK03092 78 YPYARQDKKHRGREPISARLVADLFKT-----AGADRIMTVDLHTAQIQGFFDGPVDHL--FAMPLLADYVRDKYDLDNV 150 (304)
T ss_pred ccccccccccCCCCCccHHHHHHHHHh-----cCCCeEEEEecChHHHHhhcCCCeeeE--echHHHHHHHHHhcCCCCc
Confidence 999999999999999999999999985 699999999999999999999999987 7999999999776556789
Q ss_pred EEEecCCChHHHHHHhhc--C-CCeEEEEEEEeCC--ceE-EEeeeCCCCCCeEEEEeccccchHHHHHHHHHHHhCCCc
Q 023987 186 VIAFPDDGAWKRFHKMLD--H-FPTVVCAKVREGD--KRI-VRIKEGNPAGCHVVIVDDLVQSGGTLIECQVLSYLLPAV 259 (274)
Q Consensus 186 viV~pd~G~~~ra~~~a~--~-~~~~~~~k~R~~~--~~i-~~~~~~~v~gk~vlIVDDIi~TG~Tl~~aa~~Lk~~GA~ 259 (274)
++|+||.|+++||+.+++ + .++.+++|.|+.. +.. .....++++||+|+|||||+|||+|+.++++.|++.||+
T Consensus 151 vvVspd~Ga~~~a~~la~~L~~~~~~~i~k~R~~~~~~~~~~~~~~~dv~gr~viIVDDIi~TG~Tl~~aa~~Lk~~Ga~ 230 (304)
T PRK03092 151 TVVSPDAGRVRVAEQWADRLGGAPLAFIHKTRDPTVPNQVVANRVVGDVEGRTCVLVDDMIDTGGTIAGAVRALKEAGAK 230 (304)
T ss_pred EEEEecCchHHHHHHHHHHcCCCCEEEEEEEcccCCCCceEEEecCcCCCCCEEEEEccccCcHHHHHHHHHHHHhcCCC
Confidence 999999999999999986 5 7888999999643 222 234578999999999999999999999999999999999
Q ss_pred EEEEEEeceece
Q 023987 260 LLKMCVSEFEWV 271 (274)
Q Consensus 260 ~V~~~~tH~~~~ 271 (274)
+|+++|||+.++
T Consensus 231 ~I~~~~tH~v~~ 242 (304)
T PRK03092 231 DVIIAATHGVLS 242 (304)
T ss_pred eEEEEEEcccCC
Confidence 999999999875
No 13
>PRK00934 ribose-phosphate pyrophosphokinase; Provisional
Probab=100.00 E-value=5.4e-62 Score=441.71 Aligned_cols=241 Identities=21% Similarity=0.260 Sum_probs=219.3
Q ss_pred EEEecCCcHHHHHHHHHHcCCcceeeeeEeeeCCCcceEEEeecCCCCCCeEEEEEecCCc-hhHHHHHHHHHhccccCC
Q 023987 18 HLFYCVECEELARKVAAQSDLITLQSINWRNFADGWPNLYINSAHDIRGQHVAFLASFSSP-GVIFEQISVIYALPRLFV 96 (274)
Q Consensus 18 ~i~~~~~~~~la~~ia~~lg~~~~~~~~~~~F~dGE~~~~v~~~~~v~g~~V~iiqs~~~~-~~l~elll~~~a~r~~~a 96 (274)
+||+|++|++||++||+.|| ++++++++++||||| .+++++++++|+||+|+|++.++ |++||||+++++||++|+
T Consensus 1 ~i~~~~~~~~la~~ia~~l~-~~~~~~~~~~FpdGE--~~v~i~~~v~g~~v~i~~~~~~~~d~l~ell~~~~alr~~ga 77 (285)
T PRK00934 1 MIIGGSASQLLASEVARLLN-TELALVETKRFPDGE--LYVRILGEIDGEDVVIISTTYPQDENLVELLLLIDALRDEGA 77 (285)
T ss_pred CeEeCCCCHHHHHHHHHHHC-CceEeeEEEECCCCC--EEEEECCCcCCCEEEEEeCCCCCcHHHHHHHHHHHHHHHcCC
Confidence 47999999999999999997 999999999999997 46677799999999999998776 559999999999999999
Q ss_pred ceEEEEeecCCCCCccccccCCCcccHHHHHHHHhcCCCCCCCCCEEEEEeCCchhhhcccCCCCcccccchHHHHHHHH
Q 023987 97 ASFTLVLPFFPTGSFERMEEEGDVATAFTMARILSNIPTSRGGPTSLVIYDIHALQERFYFSDHVLPLFETGIPLLKQRL 176 (274)
Q Consensus 97 ~~i~~viPY~~ysRqdr~~~~g~~~~a~~~a~ll~~~~~~~~g~d~ii~vdlH~~~~~~ff~~~~~~l~~~~~~~la~~l 176 (274)
++|++|+|||||+||||++++|||+++|.+|+||++ +| |+|+++|+|+.++++||+.|++++ ++.+.+++++
T Consensus 78 ~~i~~v~PY~~YaRqDr~~~~ge~isak~~a~ll~~-----~~-d~vitvD~H~~~~~~~f~~~~~~l--~a~~~la~~i 149 (285)
T PRK00934 78 KSITLVIPYLGYARQDKRFKPGEPISARAIAKIISA-----YY-DRIITINIHEPSILEFFPIPFINL--DAAPLIAEYI 149 (285)
T ss_pred CeEEEEecCCcccccccccCCCCCccHHHHHHHHHH-----hc-CEEEEEcCChHHHcCcCCCcEeEe--ecHHHHHHHH
Confidence 999999999999999999999999999999999996 56 999999999999999999998877 7899999999
Q ss_pred hcCCCCCCeEEEecCCChHHHHHHhhc--CCCeEEEEEEEeCCceEE-EeeeCCCCCCeEEEEeccccchHHHHHHHHHH
Q 023987 177 HQLPDANNIVIAFPDDGAWKRFHKMLD--HFPTVVCAKVREGDKRIV-RIKEGNPAGCHVVIVDDLVQSGGTLIECQVLS 253 (274)
Q Consensus 177 ~~~~~~~~~viV~pd~G~~~ra~~~a~--~~~~~~~~k~R~~~~~i~-~~~~~~v~gk~vlIVDDIi~TG~Tl~~aa~~L 253 (274)
.+. .+++++++||.||.++|..+++ +.++.+++|.|..+.... ....++++||+|+|||||+|||+|+.++++.|
T Consensus 150 ~~~--~~~~vvv~pd~Ga~~~a~~lA~~l~~~~~~i~k~r~~~~~~~~~~~~~~v~Gk~VlIVDDIi~TG~Tl~~aa~~L 227 (285)
T PRK00934 150 GDK--LDDPLVLAPDKGALELAKEAAEILGCEYDYLEKTRISPTEVEIAPKNLDVKGKDVLIVDDIISTGGTMATAIKIL 227 (285)
T ss_pred Hhc--CCCCEEEEeCCchHHHHHHHHHHhCCCEEEEEEEecCCCeEEEeccccccCCCEEEEEcCccccHHHHHHHHHHH
Confidence 653 5678999999999999999986 678888999987654432 23356899999999999999999999999999
Q ss_pred HhCCCcEEEEEEeceece
Q 023987 254 YLLPAVLLKMCVSEFEWV 271 (274)
Q Consensus 254 k~~GA~~V~~~~tH~~~~ 271 (274)
+++||++|+++|||+.++
T Consensus 228 k~~GA~~V~~~~~H~i~~ 245 (285)
T PRK00934 228 KEQGAKKVYVACVHPVLV 245 (285)
T ss_pred HHCCCCEEEEEEEeeccC
Confidence 999999999999999765
No 14
>PRK06827 phosphoribosylpyrophosphate synthetase; Provisional
Probab=100.00 E-value=2.4e-61 Score=449.87 Aligned_cols=248 Identities=17% Similarity=0.186 Sum_probs=220.2
Q ss_pred CCCcEEEEecCCcHHHHHHHHHHc---------------C----Ccc--eeeeeEeeeCCCcceEEEeecCCCCCCeEEE
Q 023987 13 QKKQVHLFYCVECEELARKVAAQS---------------D----LIT--LQSINWRNFADGWPNLYINSAHDIRGQHVAF 71 (274)
Q Consensus 13 ~~~~~~i~~~~~~~~la~~ia~~l---------------g----~~~--~~~~~~~~F~dGE~~~~v~~~~~v~g~~V~i 71 (274)
+.++|+||+|++|++||++||+.| | +++ ++++++++||||| ++++++++|||+||||
T Consensus 5 ~~~~~~i~~~~~~~~la~~ia~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~FpDGE--~~vri~~~Vrg~dV~i 82 (382)
T PRK06827 5 PVGSLGIIALPSCRELADKVDEHLVRIRERKENENIESLAFKGYSRESYLIPAKFIRFSNGE--AKGEILESVRGKDIYI 82 (382)
T ss_pred CCCceEEEECCCCHHHHHHHHHHHHHhhhhccccccccccccccCCcceeeeeEEEECCCCC--EEEEECCCCCCCeEEE
Confidence 356899999999999999999999 3 255 9999999999996 5777789999999999
Q ss_pred EEecCC----------------chhHHHHHHHHHhccccCCceEEEEeecCCCCCccccccCCCcccHHHHHHHHhcCCC
Q 023987 72 LASFSS----------------PGVIFEQISVIYALPRLFVASFTLVLPFFPTGSFERMEEEGDVATAFTMARILSNIPT 135 (274)
Q Consensus 72 iqs~~~----------------~~~l~elll~~~a~r~~~a~~i~~viPY~~ysRqdr~~~~g~~~~a~~~a~ll~~~~~ 135 (274)
+||+++ +|++||||++++||| +||++|++|+|||||+||||+ .+|||++++.+|+||+.
T Consensus 83 vqs~~~~~v~~~~~~~~~~~p~nd~lmeLll~idalr-agA~rIt~ViPY~~YaRQDr~-~~~e~itak~vA~lL~~--- 157 (382)
T PRK06827 83 LQDVGNYSVTYNMFGEKNHMSPDDHFQDLKRTIDAIR-GKARRITVIMPFLYESRQHKR-KGRESLDCALALQELEE--- 157 (382)
T ss_pred EecCCcccccccccccccCCCCcHHHHHHHHHHHHHh-cCCCeEEEEeecccccccccc-cCCCCccHHHHHHHHHH---
Confidence 999863 368999999999999 999999999999999999999 79999999999999996
Q ss_pred CCCCCCEEEEEeCCchhhhcccC-CCCcccccchHHHHHHHHhcCC-----CCCCeEEEecCCChHHHHHHhhc--CCCe
Q 023987 136 SRGGPTSLVIYDIHALQERFYFS-DHVLPLFETGIPLLKQRLHQLP-----DANNIVIAFPDDGAWKRFHKMLD--HFPT 207 (274)
Q Consensus 136 ~~~g~d~ii~vdlH~~~~~~ff~-~~~~~l~~~~~~~la~~l~~~~-----~~~~~viV~pd~G~~~ra~~~a~--~~~~ 207 (274)
+|+|+|+++|+|+.++++||+ .|++++ ++.+.+++|+.+.. +.++++||+||.||++||+.+|+ +.++
T Consensus 158 --~G~d~vitvDlHs~~i~~~F~~~pvdnl--~a~~~l~~~i~~~i~~l~~d~~~~VVVsPD~Gg~~rA~~~A~~Lg~~~ 233 (382)
T PRK06827 158 --LGVDNIITFDAHDPRIENAIPLMGFENL--YPSYQIIKALLKNEKDLEIDKDHLMVISPDTGAMDRAKYYASVLGVDL 233 (382)
T ss_pred --cCCCeEEEecCChHHhcccCCCCCcCCc--CchHHHHHHHHHhcccccccCCCcEEEEECccchHHHHHHHHHhCCCE
Confidence 699999999999999999998 578887 68899999996531 23689999999999999999986 6789
Q ss_pred EEEEEEEeCCc------e-EEEeeeC-CCCCCeEEEEeccccchHHHHHHHHHHHhCCCcEEEEEEeceece
Q 023987 208 VVCAKVREGDK------R-IVRIKEG-NPAGCHVVIVDDLVQSGGTLIECQVLSYLLPAVLLKMCVSEFEWV 271 (274)
Q Consensus 208 ~~~~k~R~~~~------~-i~~~~~~-~v~gk~vlIVDDIi~TG~Tl~~aa~~Lk~~GA~~V~~~~tH~~~~ 271 (274)
++++|+|.... . ......+ +++||+|||||||+|||+|+.++++.|+++||++|+++|||+.++
T Consensus 234 ai~~K~R~~~~~~~g~~~~~~~~~~g~dV~gr~vIIVDDII~TG~Tl~~aa~~Lk~~GA~~V~~~~tH~vf~ 305 (382)
T PRK06827 234 GLFYKRRDYSRVVNGRNPIVAHEFLGRDVEGKDVLIVDDMIASGGSMIDAAKELKSRGAKKIIVAATFGFFT 305 (382)
T ss_pred EEEEcccCCcccccCCCceEEEecCCcccCCCEEEEEeCCcCcHHHHHHHHHHHHHcCCCEEEEEEEeecCh
Confidence 99999996432 1 1223456 899999999999999999999999999999999999999999864
No 15
>TIGR01251 ribP_PPkin ribose-phosphate pyrophosphokinase. In some systems, close homologs lacking enzymatic activity exist and perform regulatory functions. The model is designated subfamily rather than equivalog for this reason.
Probab=100.00 E-value=5.9e-60 Score=432.76 Aligned_cols=244 Identities=26% Similarity=0.375 Sum_probs=223.2
Q ss_pred EEEEecCCcHHHHHHHHHHcCCcceeeeeEeeeCCCcceEEEeecCCCCCCeEEEE-EecCCc--hhHHHHHHHHHhccc
Q 023987 17 VHLFYCVECEELARKVAAQSDLITLQSINWRNFADGWPNLYINSAHDIRGQHVAFL-ASFSSP--GVIFEQISVIYALPR 93 (274)
Q Consensus 17 ~~i~~~~~~~~la~~ia~~lg~~~~~~~~~~~F~dGE~~~~v~~~~~v~g~~V~ii-qs~~~~--~~l~elll~~~a~r~ 93 (274)
|+||+|++|++||++||+.|| ++++++++++||||| +++++.++++|+||+|+ ||+++| +++|||+++++|||+
T Consensus 1 ~~i~~~~~~~~la~~ia~~lg-~~~~~~~~~~FpdGE--~~v~i~~~v~g~~v~iv~~s~~~~~~~~l~el~~~~~a~r~ 77 (308)
T TIGR01251 1 MKIFSGSSNQELAQKVAKNLG-LPLGDVEVKRFPDGE--LYVRINESVRGKDVFIIQQSTSAPVNDNLMELLIMIDALKR 77 (308)
T ss_pred CEEEECCCCHHHHHHHHHHhC-CeeeeeEEEECCCCC--EEEEECCCCCCCeEEEEeCCCCCCccHHHHHHHHHHHHHHH
Confidence 578999999999999999997 999999999999996 57777899999999999 999764 679999999999999
Q ss_pred cCCceEEEEeecCCCCCccccccCCCcccHHHHHHHHhcCCCCCCCCCEEEEEeCCchhhhcccCCCCcccccchHHHHH
Q 023987 94 LFVASFTLVLPFFPTGSFERMEEEGDVATAFTMARILSNIPTSRGGPTSLVIYDIHALQERFYFSDHVLPLFETGIPLLK 173 (274)
Q Consensus 94 ~~a~~i~~viPY~~ysRqdr~~~~g~~~~a~~~a~ll~~~~~~~~g~d~ii~vdlH~~~~~~ff~~~~~~l~~~~~~~la 173 (274)
+|+++|++|+|||||+||||++++|||++++.+|+||++ +|+|+++++|+|+.+.++||+.|++++ .+.+.++
T Consensus 78 ~ga~~i~~v~PYl~Y~RqDr~~~~ge~is~~~~a~ll~~-----~g~d~vit~DlHs~~~~~~f~ip~~~l--~a~~~l~ 150 (308)
T TIGR01251 78 ASAKSITAVIPYYGYARQDKKFKSREPISAKLVANLLET-----AGADRVLTVDLHSPQIQGFFDVPVDNL--YASPVLA 150 (308)
T ss_pred cCCCeEEEEEEecccchhccccCCCCCchHHHHHHHHHH-----cCCCEEEEecCChHHhcCcCCCceecc--cCHHHHH
Confidence 999999999999999999999999999999999999996 699999999999999999999998887 6899999
Q ss_pred HHHhcCCCCCCeEEEecCCChHHHHHHhhc--CCCeEEEEEEEe-CCceEE-EeeeCCCCCCeEEEEeccccchHHHHHH
Q 023987 174 QRLHQLPDANNIVIAFPDDGAWKRFHKMLD--HFPTVVCAKVRE-GDKRIV-RIKEGNPAGCHVVIVDDLVQSGGTLIEC 249 (274)
Q Consensus 174 ~~l~~~~~~~~~viV~pd~G~~~ra~~~a~--~~~~~~~~k~R~-~~~~i~-~~~~~~v~gk~vlIVDDIi~TG~Tl~~a 249 (274)
+|+.+.. .+++++|+||.||++||..+++ +.++.+++|.|. .++... ....++++||+|+|||||++||+|+.++
T Consensus 151 ~~i~~~~-~~~~viv~pd~g~~~~A~~lA~~Lg~~~~~i~k~r~~~~~~~~~~~~~~~v~g~~vliVDDii~tG~Tl~~a 229 (308)
T TIGR01251 151 EYLKKKI-LDNPVVVSPDAGGVERAKKVADALGCPLAIIDKRRISATNEVEVMNLVGDVEGKDVVIVDDIIDTGGTIAKA 229 (308)
T ss_pred HHHHhhC-CCCCEEEEECCchHHHHHHHHHHhCCCEEEEEEEecCCCCEEEEEecccccCCCEEEEEccccCCHHHHHHH
Confidence 9998753 5788999999999999999997 778888999997 443332 3456789999999999999999999999
Q ss_pred HHHHHhCCCcEEEEEEeceece
Q 023987 250 QVLSYLLPAVLLKMCVSEFEWV 271 (274)
Q Consensus 250 a~~Lk~~GA~~V~~~~tH~~~~ 271 (274)
++.|+++||++|++++||+.++
T Consensus 230 ~~~l~~~ga~~v~~~~th~v~~ 251 (308)
T TIGR01251 230 AEILKSAGAKRVIAAATHGVFS 251 (308)
T ss_pred HHHHHhcCCCEEEEEEEeeecC
Confidence 9999999999999999998654
No 16
>PLN02369 ribose-phosphate pyrophosphokinase
Probab=100.00 E-value=5.3e-60 Score=431.15 Aligned_cols=236 Identities=23% Similarity=0.343 Sum_probs=214.2
Q ss_pred HHHHHHHHHHcCCcceeeeeEeeeCCCcceEEEeecCCCCCCeEEEEEecCCc--hhHHHHHHHHHhccccCCceEEEEe
Q 023987 26 EELARKVAAQSDLITLQSINWRNFADGWPNLYINSAHDIRGQHVAFLASFSSP--GVIFEQISVIYALPRLFVASFTLVL 103 (274)
Q Consensus 26 ~~la~~ia~~lg~~~~~~~~~~~F~dGE~~~~v~~~~~v~g~~V~iiqs~~~~--~~l~elll~~~a~r~~~a~~i~~vi 103 (274)
++||++||+.|| ++++.+++++|||||. +++++++++|+||||+||+++| |++||||++++|||++|+++|++|+
T Consensus 1 ~~lA~~ia~~lg-~~l~~~~~~~FpdGE~--~v~i~~~v~g~~V~iv~s~~~p~nd~l~eLl~~~~a~r~~~a~~i~~Vi 77 (302)
T PLN02369 1 PALSQEIACYLG-LELGKITIKRFADGEI--YVQLQESVRGCDVFLVQPTCPPANENLMELLIMIDACRRASAKRITAVI 77 (302)
T ss_pred ChHHHHHHHHhC-CceeeeEEEECCCCCE--EEEECCCCCCCeEEEEecCCCCcchHHHHHHHHHHHHHHcCCCeEEEEe
Confidence 379999999997 9999999999999974 6677799999999999999865 6899999999999999999999999
Q ss_pred ecCCCCCccccccCCCcccHHHHHHHHhcCCCCCCCCCEEEEEeCCchhhhcccCCCCcccccchHHHHHHHHhcC-CCC
Q 023987 104 PFFPTGSFERMEEEGDVATAFTMARILSNIPTSRGGPTSLVIYDIHALQERFYFSDHVLPLFETGIPLLKQRLHQL-PDA 182 (274)
Q Consensus 104 PY~~ysRqdr~~~~g~~~~a~~~a~ll~~~~~~~~g~d~ii~vdlH~~~~~~ff~~~~~~l~~~~~~~la~~l~~~-~~~ 182 (274)
|||||+||||++++|||+++|.+|+||+. +|+|+|+++|+|+.++++||+.|++++ ++.+.+++|+.+. ...
T Consensus 78 PYl~YsRQDr~~~~~e~isak~va~lL~~-----~g~d~vi~vDlHs~~i~~~F~ip~~~l--~~~~~~~~~i~~~~~~~ 150 (302)
T PLN02369 78 PYFGYARADRKTQGRESIAAKLVANLITE-----AGADRVLACDLHSGQSMGYFDIPVDHV--YGQPVILDYLASKTISS 150 (302)
T ss_pred ecccccccccccCCCCCchHHHHHHHHHh-----cCCCEEEEEECCchHHhhccCCceecc--cchHHHHHHHHHhCCCC
Confidence 99999999999999999999999999986 699999999999999999999999887 7889999999664 223
Q ss_pred CCeEEEecCCChHHHHHHhhc---CCCeEEEEEEEeCCceE-EEeeeCCCCCCeEEEEeccccchHHHHHHHHHHHhCCC
Q 023987 183 NNIVIAFPDDGAWKRFHKMLD---HFPTVVCAKVREGDKRI-VRIKEGNPAGCHVVIVDDLVQSGGTLIECQVLSYLLPA 258 (274)
Q Consensus 183 ~~~viV~pd~G~~~ra~~~a~---~~~~~~~~k~R~~~~~i-~~~~~~~v~gk~vlIVDDIi~TG~Tl~~aa~~Lk~~GA 258 (274)
+++++|+||.||++|+..+++ +.++.++.|+|...+.. .....++++||+|+|||||+|||+|+.++++.|++.||
T Consensus 151 ~~~vvVspd~gg~~~a~~~a~~l~~~~~~~l~k~R~~~~~~~~~~~~~~v~g~~viivDDii~TG~Tl~~a~~~l~~~Ga 230 (302)
T PLN02369 151 PDLVVVSPDVGGVARARAFAKKLSDAPLAIVDKRRQGHNVAEVMNLIGDVKGKVAIMVDDMIDTAGTITKGAALLHQEGA 230 (302)
T ss_pred CceEEEEECcChHHHHHHHHHHcCCCCEEEEEEecCCcceeeeEecCCCCCCCEEEEEcCcccchHHHHHHHHHHHhCCC
Confidence 678999999999999999875 46888999999765432 23457899999999999999999999999999999999
Q ss_pred cEEEEEEeceece
Q 023987 259 VLLKMCVSEFEWV 271 (274)
Q Consensus 259 ~~V~~~~tH~~~~ 271 (274)
++|++++||+.++
T Consensus 231 ~~v~~~~tH~v~~ 243 (302)
T PLN02369 231 REVYACATHAVFS 243 (302)
T ss_pred CEEEEEEEeeeeC
Confidence 9999999999875
No 17
>KOG1503 consensus Phosphoribosylpyrophosphate synthetase-associated protein [Amino acid transport and metabolism; Nucleotide transport and metabolism]
Probab=100.00 E-value=4.7e-49 Score=338.08 Aligned_cols=247 Identities=19% Similarity=0.214 Sum_probs=219.8
Q ss_pred CCcEEEEecCCcHHHHHHHHHHcCCcceeeeeEeeeCCCcceEEEeecCCCCCCeEEEEEecCCc--hhHHHHHHHHHhc
Q 023987 14 KKQVHLFYCVECEELARKVAAQSDLITLQSINWRNFADGWPNLYINSAHDIRGQHVAFLASFSSP--GVIFEQISVIYAL 91 (274)
Q Consensus 14 ~~~~~i~~~~~~~~la~~ia~~lg~~~~~~~~~~~F~dGE~~~~v~~~~~v~g~~V~iiqs~~~~--~~l~elll~~~a~ 91 (274)
++++.+|+|+|+++||+.|++.|| ++++++.+.+-+|+|+ +|+|.++|||+||||+|+.+.+ +++||||.|+.||
T Consensus 6 ~sg~vl~s~ns~~elak~vaerlg-i~~g~~~vy~~tnret--~vei~~svrgkdvfiiqt~skdvn~~vmellim~yac 82 (354)
T KOG1503|consen 6 SSGMVLFSGNSHPELAKMVAERLG-IELGKATVYQKTNRET--RVEIKESVRGKDVFIIQTGSKDVNNDVMELLIMAYAC 82 (354)
T ss_pred cCCeEEEcCCCCHHHHHHHHHHhc-ccccceEEEecCCCce--EEEhhhhccCceEEEEEecCcccchHHHHHHHHHHHH
Confidence 689999999999999999999998 9999999999999975 8888899999999999999876 6899999999999
Q ss_pred cccCCceEEEEeecCCCCCccccccCCCcccHHHHHHHHhcCCCCCCCCCEEEEEeCCchhhhcccCCCCcccccchHHH
Q 023987 92 PRLFVASFTLVLPFFPTGSFERMEEEGDVATAFTMARILSNIPTSRGGPTSLVIYDIHALQERFYFSDHVLPLFETGIPL 171 (274)
Q Consensus 92 r~~~a~~i~~viPY~~ysRqdr~~~~g~~~~a~~~a~ll~~~~~~~~g~d~ii~vdlH~~~~~~ff~~~~~~l~~~~~~~ 171 (274)
|.+++++|+.|+||||||+|.|..+ +.++..|++|.|+.. +|..++|++|+|...++|||++|++|+ .+++.
T Consensus 83 kts~aksiigvipy~pyskqckmrk-rgsiv~klla~mmck-----aglthlitmdlhqkeiqgff~~pvdnl--raspf 154 (354)
T KOG1503|consen 83 KTSCAKSIIGVIPYLPYSKQCKMRK-RGSIVSKLLASMMCK-----AGLTHLITMDLHQKEIQGFFSIPVDNL--RASPF 154 (354)
T ss_pred hhhhhhceEEEeecCccchhhhhhh-cccHHHHHHHHHHHh-----cccceEEeehhhhHhhcceeccccccc--ccCHH
Confidence 9999999999999999999999865 456889999999984 799999999999999999999999998 79999
Q ss_pred HHHHHhcCC-CCCCeEEEecCCChHHHHHHhhc--CCCeEEEEEEEe-----------CC--c---------e----E--
Q 023987 172 LKQRLHQLP-DANNIVIAFPDDGAWKRFHKMLD--HFPTVVCAKVRE-----------GD--K---------R----I-- 220 (274)
Q Consensus 172 la~~l~~~~-~~~~~viV~pd~G~~~ra~~~a~--~~~~~~~~k~R~-----------~~--~---------~----i-- 220 (274)
|.+||.+.. +++|.+||+...|..++|...|+ .+.+++++.+.+ .+ . . +
T Consensus 155 llqyiqe~ipdyrnavivaksp~~akka~syaerlrlglavihge~k~~e~d~~dgr~spp~~~~~t~~~~~~lp~~~~k 234 (354)
T KOG1503|consen 155 LLQYIQEEIPDYRNAVIVAKSPGVAKKAQSYAERLRLGLAVIHGEQKDTESDLVDGRHSPPPVVTATTHPSLELPAQISK 234 (354)
T ss_pred HHHHHHHhCccccceEEEecCcchhhHHHhHHHHHhhceeEeeccccccccccccCCcCCCCccccccCccccCchhhcc
Confidence 999998764 78899999999999999999987 445666654432 11 0 0 0
Q ss_pred E---EeeeCCCCCCeEEEEeccccchHHHHHHHHHHHhCCCcEEEEEEeceece
Q 023987 221 V---RIKEGNPAGCHVVIVDDLVQSGGTLIECQVLSYLLPAVLLKMCVSEFEWV 271 (274)
Q Consensus 221 ~---~~~~~~v~gk~vlIVDDIi~TG~Tl~~aa~~Lk~~GA~~V~~~~tH~~~~ 271 (274)
. ....||+.||-.++||||||.-.++.+|++.||+.||-+|++.+|||..+
T Consensus 235 ~kppltvvgdvggriaimvddiiddvqsfvaaae~lkergaykiyv~athglls 288 (354)
T KOG1503|consen 235 EKPPLTVVGDVGGRIAIMVDDIIDDVQSFVAAAEVLKERGAYKIYVMATHGLLS 288 (354)
T ss_pred cCCCeEEEeccCceEEEEehhhHHhHHHHHHHHHHHHhcCceEEEEEeeccccc
Confidence 0 12468999999999999999999999999999999999999999999876
No 18
>PF13793 Pribosyltran_N: N-terminal domain of ribose phosphate pyrophosphokinase; PDB: 2JI4_A 1DKU_B 1IBS_B 1DKR_B 3MBI_C 3LRT_B 3LPN_B 3NAG_B 2H07_B 2H06_B ....
Probab=100.00 E-value=2.4e-37 Score=244.61 Aligned_cols=112 Identities=29% Similarity=0.476 Sum_probs=95.6
Q ss_pred EEEEecCCcHHHHHHHHHHcCCcceeeeeEeeeCCCcceEEEeecCCCCCCeEEEEEecCCc--hhHHHHHHHHHhcccc
Q 023987 17 VHLFYCVECEELARKVAAQSDLITLQSINWRNFADGWPNLYINSAHDIRGQHVAFLASFSSP--GVIFEQISVIYALPRL 94 (274)
Q Consensus 17 ~~i~~~~~~~~la~~ia~~lg~~~~~~~~~~~F~dGE~~~~v~~~~~v~g~~V~iiqs~~~~--~~l~elll~~~a~r~~ 94 (274)
|+||+|++|++||++||+.|| ++++++++++||||| .+|+++++++|+|||||||+++| |++||||++++|||+.
T Consensus 1 m~I~~g~~~~~La~~ia~~L~-~~~~~~~~~~F~dGE--~~v~i~~~v~g~dv~iiqs~~~~~nd~lmeLll~i~a~r~~ 77 (116)
T PF13793_consen 1 MVIFSGSSSQDLAERIAEALG-IPLGKVETKRFPDGE--TYVRIPESVRGKDVFIIQSTSPPVNDNLMELLLLIDALRRA 77 (116)
T ss_dssp EEEEESSSGHHHHHHHHHHTT-S-EE-EEEEE-TTS---EEEEESS--TTSEEEEE---SSSHHHHHHHHHHHHHHHHHT
T ss_pred CEEEECCCCHHHHHHHHHHhC-CceeeeEEEEcCCCC--EEEEecccccCCceEEEEecCCchhHHHHHHHHHHHHHHHc
Confidence 689999999999999999997 999999999999996 57777899999999999999987 7899999999999999
Q ss_pred CCceEEEEeecCCCCCccccccCCCcccHHHHHHHHhc
Q 023987 95 FVASFTLVLPFFPTGSFERMEEEGDVATAFTMARILSN 132 (274)
Q Consensus 95 ~a~~i~~viPY~~ysRqdr~~~~g~~~~a~~~a~ll~~ 132 (274)
|+++|++|+|||||+||||+ ++|||++++.+|++|+.
T Consensus 78 ~a~~i~~ViPYl~YaRQDr~-~~ge~isak~~a~lL~~ 114 (116)
T PF13793_consen 78 GAKRITLVIPYLPYARQDRR-KPGEPISAKVVAKLLSA 114 (116)
T ss_dssp TBSEEEEEESS-TTTTSSSS-STTC--HHHHHHHHHHH
T ss_pred CCcEEEEeccchhhhhhccC-CCCCcchHHHHHHHHHh
Confidence 99999999999999999999 99999999999999985
No 19
>PF14572 Pribosyl_synth: Phosphoribosyl synthetase-associated domain; PDB: 2H07_B 2H06_B 3S5J_B 2HCR_A 3EFH_A 2H08_A 1DKR_B 1DKU_B 1IBS_B 2JI4_A ....
Probab=99.83 E-value=1.8e-20 Score=158.04 Aligned_cols=90 Identities=27% Similarity=0.279 Sum_probs=68.1
Q ss_pred CCCeEEEecCCChHHHHHHhhc--CCCeEEEEEEEeCC---------------------c---------eE-EEeeeCCC
Q 023987 182 ANNIVIAFPDDGAWKRFHKMLD--HFPTVVCAKVREGD---------------------K---------RI-VRIKEGNP 228 (274)
Q Consensus 182 ~~~~viV~pd~G~~~ra~~~a~--~~~~~~~~k~R~~~---------------------~---------~i-~~~~~~~v 228 (274)
++|.|||+|+.||.+||..+|+ ++.+++++++|... . +. ...+.|||
T Consensus 2 y~naVIVa~~~g~akRAts~Ad~L~l~~avih~e~~~~~~~~~~~~~s~p~~~~~~~~~~~~~~~~~~~e~~~~~vVGDV 81 (184)
T PF14572_consen 2 YRNAVIVAKDPGGAKRATSFADRLRLGFAVIHGERRDSESDGVDGRHSPPMSRSAAVSSSEEIPEMTPKEKPPMNVVGDV 81 (184)
T ss_dssp GGGEEEEESSGGGHHHHHHHHHHCT-EEEEE------------------------------------------EEEES--
T ss_pred CCCCEEEeCCCCchHhHHHHHHHhCCCeeEecCccccccccccccccCCCccccccccccchhhhcccCcccceEEEEEc
Confidence 6789999999999999999997 56678888776410 0 00 12357999
Q ss_pred CCCeEEEEeccccchHHHHHHHHHHHhCCCcEEEEEEeceece
Q 023987 229 AGCHVVIVDDLVQSGGTLIECQVLSYLLPAVLLKMCVSEFEWV 271 (274)
Q Consensus 229 ~gk~vlIVDDIi~TG~Tl~~aa~~Lk~~GA~~V~~~~tH~~~~ 271 (274)
+||+|+|||||||||+|+.++++.||++||++|++++|||.++
T Consensus 82 ~gk~~IIvDDiIdtg~Tl~~aA~~Lk~~GA~~V~~~aTHgvfs 124 (184)
T PF14572_consen 82 KGKICIIVDDIIDTGGTLIKAAELLKERGAKKVYACATHGVFS 124 (184)
T ss_dssp TTSEEEEEEEEESSTHHHHHHHHHHHHTTESEEEEEEEEE---
T ss_pred cCCeEeeecccccchHHHHHHHHHHHHcCCCEEEEEEeCcccC
Confidence 9999999999999999999999999999999999999999886
No 20
>PRK13811 orotate phosphoribosyltransferase; Provisional
Probab=99.73 E-value=4.4e-17 Score=137.37 Aligned_cols=134 Identities=14% Similarity=0.076 Sum_probs=101.4
Q ss_pred HHHHHHHhcCCCCCCCCCEEEEEeCCchhhhccc-CCCCcccccchHHHHHHHHhcCCCCCCeEEEecCCChHHHHHHhh
Q 023987 124 FTMARILSNIPTSRGGPTSLVIYDIHALQERFYF-SDHVLPLFETGIPLLKQRLHQLPDANNIVIAFPDDGAWKRFHKML 202 (274)
Q Consensus 124 ~~~a~ll~~~~~~~~g~d~ii~vdlH~~~~~~ff-~~~~~~l~~~~~~~la~~l~~~~~~~~~viV~pd~G~~~ra~~~a 202 (274)
..++++|.+ .|++++..+++||.+.++|| +.+....+-.....+++.+.+. .+.++|++|+.||+++|..++
T Consensus 3 ~~~~~~l~~-----~ga~~~g~f~L~SG~~s~~y~d~~~l~~~p~~~~~l~~~l~~~--~~~d~Vvg~~~gGi~~A~~~a 75 (170)
T PRK13811 3 NTIAELLIS-----YKAIEFGDFTLASGAKSRYYIDIKTAITHPALLKEIAAEVAKR--YDFDVVAGVAVGGVPLAVAVS 75 (170)
T ss_pred HHHHHHHHH-----CCCEEECCEEEccCCcCCEEEeCchhccCHHHHHHHHHHHHhh--CCCCEEEecCcCcHHHHHHHH
Confidence 457888875 58999999999999998887 4321110001233455555443 355699999999999999998
Q ss_pred c--CCCeEEEEEEEeCCceEEEeeeCCCCCCeEEEEeccccchHHHHHHHHHHHhCCCcEEEEEE
Q 023987 203 D--HFPTVVCAKVREGDKRIVRIKEGNPAGCHVVIVDDLVQSGGTLIECQVLSYLLPAVLLKMCV 265 (274)
Q Consensus 203 ~--~~~~~~~~k~R~~~~~i~~~~~~~v~gk~vlIVDDIi~TG~Tl~~aa~~Lk~~GA~~V~~~~ 265 (274)
. +.|+.+++|+++..+.. ....++++|++|+||||++|||+|+.++++.|+++||+-+.++|
T Consensus 76 ~~l~~p~~~~rK~~k~~g~~-~~~~g~~~g~~VlIVDDvi~TG~T~~~~~~~l~~~Ga~v~~~~~ 139 (170)
T PRK13811 76 LAAGKPYAIIRKEAKDHGKA-GLIIGDVKGKRVLLVEDVTTSGGSALYGIEQLRAAGAVVDDVVT 139 (170)
T ss_pred HHHCCCEEEEecCCCCCCCc-ceEEcccCCCEEEEEEecccccHHHHHHHHHHHHCCCeEEEEEE
Confidence 6 78888888876544422 22357799999999999999999999999999999998777655
No 21
>PRK11595 DNA utilization protein GntX; Provisional
Probab=99.60 E-value=4.8e-16 Score=136.87 Aligned_cols=162 Identities=20% Similarity=0.100 Sum_probs=106.7
Q ss_pred HHHhccc--cCCceEEEEeecCCCCCcccc-cc-CCCcccHHHHHHHHhcCC------CCCCCCCEEEEEeCCchh--hh
Q 023987 87 VIYALPR--LFVASFTLVLPFFPTGSFERM-EE-EGDVATAFTMARILSNIP------TSRGGPTSLVIYDIHALQ--ER 154 (274)
Q Consensus 87 ~~~a~r~--~~a~~i~~viPY~~ysRqdr~-~~-~g~~~~a~~~a~ll~~~~------~~~~g~d~ii~vdlH~~~--~~ 154 (274)
+|..|.+ ..+.+..++.+|-+..|+-.. +| .|+...++.++++|.... .....+|.|++||+|..+ .|
T Consensus 50 ~C~~C~~~~~~~~~~~a~~~Y~g~~r~lI~~~Ky~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~d~ivpVPl~~~r~~~R 129 (227)
T PRK11595 50 PCGRCLQKPPPWQRLVFVSDYAPPLSGLIHQLKFSRRSELASVLARLLLLEWLQARRSTGLQKPDRIISVPLHQRRHWRR 129 (227)
T ss_pred CcHHHHcCCCchhheeeeeecccHHHHHHHHHHHCccHHHHHHHHHHHHHHHHHHhhhhcccCCCeEEecCCCHHHHHHC
Confidence 4677765 233567888899888886332 23 567777788888774210 001257899999999876 47
Q ss_pred cccCCCCcccccchHHHHHHHHhcCCCCCCeEEEecCCChHHHHHHhhcCCCeEEEEEEEeCCceEEEeeeCCCCCCeEE
Q 023987 155 FYFSDHVLPLFETGIPLLKQRLHQLPDANNIVIAFPDDGAWKRFHKMLDHFPTVVCAKVREGDKRIVRIKEGNPAGCHVV 234 (274)
Q Consensus 155 ~ff~~~~~~l~~~~~~~la~~l~~~~~~~~~viV~pd~G~~~ra~~~a~~~~~~~~~k~R~~~~~i~~~~~~~v~gk~vl 234 (274)
|| | ++.++|+.+.+..+. .++.+.+.|.+....+... -.++|..+........++++||+||
T Consensus 130 Gf-n---------q~~~la~~la~~~~~------~~~~~~l~r~~~~~~q~~l--~~~~R~~n~~~~f~~~~~~~~~~vl 191 (227)
T PRK11595 130 GF-N---------QSDLLCRPLARWLGC------DYDSEALTRTRATATQHFL--SARLRKRNLKNAFRLELPVQGQHMA 191 (227)
T ss_pred CC-C---------HHHHHHHHHHHHHCC------CCcccceEEecCCCCcccC--CHHHHhhhhhhhhccCCCCCCCEEE
Confidence 87 4 678888888775321 1233344444333322111 1233433321112235679999999
Q ss_pred EEeccccchHHHHHHHHHHHhCCCcEEEEEEe
Q 023987 235 IVDDLVQSGGTLIECQVLSYLLPAVLLKMCVS 266 (274)
Q Consensus 235 IVDDIi~TG~Tl~~aa~~Lk~~GA~~V~~~~t 266 (274)
|||||+|||.|+.++++.|++.||++|++++.
T Consensus 192 lvDDv~tTG~Tl~~~~~~L~~~g~~~V~~~~l 223 (227)
T PRK11595 192 IVDDVVTTGSTVAEIAQLLLRNGAASVQVWCL 223 (227)
T ss_pred EEeeeecchHHHHHHHHHHHHcCCcEEEEEEE
Confidence 99999999999999999999999999999874
No 22
>COG0634 Hpt Hypoxanthine-guanine phosphoribosyltransferase [Nucleotide transport and metabolism]
Probab=99.58 E-value=1.9e-14 Score=119.68 Aligned_cols=99 Identities=16% Similarity=0.175 Sum_probs=83.3
Q ss_pred hHHHHHHHHhcCCCCCCeEEEecCCChHHHHHHhhcC----CCeEEEEEEEeCCc-------eEEEeeeCCCCCCeEEEE
Q 023987 168 GIPLLKQRLHQLPDANNIVIAFPDDGAWKRFHKMLDH----FPTVVCAKVREGDK-------RIVRIKEGNPAGCHVVIV 236 (274)
Q Consensus 168 ~~~~la~~l~~~~~~~~~viV~pd~G~~~ra~~~a~~----~~~~~~~k~R~~~~-------~i~~~~~~~v~gk~vlIV 236 (274)
...++|++|.+.|..+++++|+..+|++.++.++.+. +.+.+++-.+++++ ++...+..+++||+||||
T Consensus 20 ri~ela~~I~~~y~g~~~~vv~iLkGs~~F~~dL~r~i~~~~e~dFm~vSSYg~~t~ssg~v~i~kDld~di~grdVLiV 99 (178)
T COG0634 20 RIKELAAQITEDYGGKDPLVVGVLKGSFPFMADLIRAIDFPLEVDFMHVSSYGGGTSSSGEVKILKDLDEDIKGRDVLIV 99 (178)
T ss_pred HHHHHHHHHHHhhCCCceEEEEEcccchhhHHHHHHhcCCCceeEEEEEeccCCCcccCCceEEecccccCCCCCeEEEE
Confidence 5678999999988778999999999999999999862 34567777776543 222345679999999999
Q ss_pred eccccchHHHHHHHHHHHhCCCcEEEEEEe
Q 023987 237 DDLVQSGGTLIECQVLSYLLPAVLLKMCVS 266 (274)
Q Consensus 237 DDIi~TG~Tl~~aa~~Lk~~GA~~V~~~~t 266 (274)
|||+|||.||.++.+.|+.+||+++.+++.
T Consensus 100 eDIiDsG~TLs~i~~~l~~r~a~sv~i~tL 129 (178)
T COG0634 100 EDIIDSGLTLSKVRDLLKERGAKSVRIATL 129 (178)
T ss_pred ecccccChhHHHHHHHHHhCCCCeEEEEEE
Confidence 999999999999999999999999998864
No 23
>PRK09162 hypoxanthine-guanine phosphoribosyltransferase; Provisional
Probab=99.55 E-value=4.4e-14 Score=120.32 Aligned_cols=101 Identities=18% Similarity=0.156 Sum_probs=79.6
Q ss_pred hHHHHHHHHhcCCCCCCeEEEecCCChHHHHHHhhc--CCCe--EEEEEEEeCCc----eEE--EeeeCCCCCCeEEEEe
Q 023987 168 GIPLLKQRLHQLPDANNIVIAFPDDGAWKRFHKMLD--HFPT--VVCAKVREGDK----RIV--RIKEGNPAGCHVVIVD 237 (274)
Q Consensus 168 ~~~~la~~l~~~~~~~~~viV~pd~G~~~ra~~~a~--~~~~--~~~~k~R~~~~----~i~--~~~~~~v~gk~vlIVD 237 (274)
....+|++|.+.++.+++++|+++.||+.+|+.+++ +.++ .++.+.|..+. .+. .....+++||+|||||
T Consensus 25 ~i~~la~~i~~~~~~~~~viV~i~~gg~~~A~~La~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~gk~VLIVD 104 (181)
T PRK09162 25 AIDRMADEITADLADENPLVLCVMGGGLVFTGQLLPRLDFPLEFDYLHATRYRNETTGGELVWKVKPRESLKGRTVLVVD 104 (181)
T ss_pred HHHHHHHHHHHHcCCCCeEEEEECCCcHHHHHHHHHHcCCCcccCEEEEEecCCCccCCceeEecCCCCCCCCCEEEEEc
Confidence 567788888776555678999999999999999986 4443 35566665432 111 1234579999999999
Q ss_pred ccccchHHHHHHHHHHHhCCCcEEEEEEece
Q 023987 238 DLVQSGGTLIECQVLSYLLPAVLLKMCVSEF 268 (274)
Q Consensus 238 DIi~TG~Tl~~aa~~Lk~~GA~~V~~~~tH~ 268 (274)
||+|||.|+.++++.|++.||++|+++|..-
T Consensus 105 DIidTG~Tl~~~~~~Lk~~Ga~~V~~avL~~ 135 (181)
T PRK09162 105 DILDEGHTLAAIRDRCLEMGAAEVYSAVLVD 135 (181)
T ss_pred cccCcHHHHHHHHHHHHhCCCCEEEEEEEEE
Confidence 9999999999999999999999999988663
No 24
>TIGR01203 HGPRTase hypoxanthine phosphoribosyltransferase. Sequence differences as small as a single residue can affect whether members of this family act on hypoxanthine and guanine or hypoxanthine only. The designation of this model as equivalog reflects hypoxanthine specificity and does not reflect whether or not guanine can replace hypoxanthine.
Probab=99.55 E-value=2.9e-14 Score=119.80 Aligned_cols=102 Identities=20% Similarity=0.166 Sum_probs=77.8
Q ss_pred hHHHHHHHHhcCCCCCCeEEEecCCChHHHHHHhhc--CCC--eEEEEEEEe--C---CceEE--EeeeCCCCCCeEEEE
Q 023987 168 GIPLLKQRLHQLPDANNIVIAFPDDGAWKRFHKMLD--HFP--TVVCAKVRE--G---DKRIV--RIKEGNPAGCHVVIV 236 (274)
Q Consensus 168 ~~~~la~~l~~~~~~~~~viV~pd~G~~~ra~~~a~--~~~--~~~~~k~R~--~---~~~i~--~~~~~~v~gk~vlIV 236 (274)
....+|+.|.+.++.+++++|+|+.||+.+|+.+++ +.+ +.++.-.++ . .+... .....+++||+||||
T Consensus 11 ~i~~lA~~I~~~~~~~~~vvv~i~~GG~~~a~~l~~~L~~~~~v~~i~~~~Y~~~~~~~~~~~~~~~~~~~~~gk~vliv 90 (166)
T TIGR01203 11 RIAELAKQITEDYAGKPLVLLCVLKGSFPFFADLIRYIAVPVQVDFMAVSSYGNGMQSSGDVKILKDLDLSIKGKDVLIV 90 (166)
T ss_pred HHHHHHHHHHHHcCCCCeEEEEEccCCHHHHHHHHHhcCCCceeeEEEEeeccCCCcccCceEEecCCCCCCCCCEEEEE
Confidence 567888888776545689999999999999999986 333 333332211 1 11221 234568999999999
Q ss_pred eccccchHHHHHHHHHHHhCCCcEEEEEEecee
Q 023987 237 DDLVQSGGTLIECQVLSYLLPAVLLKMCVSEFE 269 (274)
Q Consensus 237 DDIi~TG~Tl~~aa~~Lk~~GA~~V~~~~tH~~ 269 (274)
|||+|||+|+.++++.|++.||++|+++|.+-.
T Consensus 91 DDii~TG~Tl~~~~~~l~~~g~~~i~~~~l~~k 123 (166)
T TIGR01203 91 EDIVDTGLTLQYLLDLLKARKPKSLKIVTLLDK 123 (166)
T ss_pred eeeeCcHHHHHHHHHHHHHCCCCEEEEEEEEec
Confidence 999999999999999999999999999887654
No 25
>PRK15423 hypoxanthine phosphoribosyltransferase; Provisional
Probab=99.52 E-value=1.2e-13 Score=117.35 Aligned_cols=102 Identities=17% Similarity=0.216 Sum_probs=80.7
Q ss_pred chHHHHHHHHhcCCC--CCCeEEEecCCChHHHHHHhhc--CCC--eEEEEEEEeCCc-----eEE--EeeeCCCCCCeE
Q 023987 167 TGIPLLKQRLHQLPD--ANNIVIAFPDDGAWKRFHKMLD--HFP--TVVCAKVREGDK-----RIV--RIKEGNPAGCHV 233 (274)
Q Consensus 167 ~~~~~la~~l~~~~~--~~~~viV~pd~G~~~ra~~~a~--~~~--~~~~~k~R~~~~-----~i~--~~~~~~v~gk~v 233 (274)
.....+|.+|.+.+. ..++++|+++.||+.+|+.+++ +.+ +.+++.+|+.++ .+. .....+++||+|
T Consensus 16 ~~i~~lA~~I~~~~~~~~~~~vvvgI~~Gg~~fa~~L~~~L~~~~~v~~l~~ssY~~~~~~~~~v~i~~~~~~~v~gk~V 95 (178)
T PRK15423 16 ARIAELGRQITERYKDSGSDMVLVGLLRGSFMFMADLCREVQVSHEVDFMTASSYGSGMSTTRDVKILKDLDEDIRGKDV 95 (178)
T ss_pred HHHHHHHHHHHHHhcccCCCeEEEEEecCChHHHHHHHHHhCCCcceeEEEEEEecCCCcccCceEEecCCCCCCCCCEE
Confidence 356778888877653 2468999999999999999986 333 557777776521 221 123458999999
Q ss_pred EEEeccccchHHHHHHHHHHHhCCCcEEEEEEece
Q 023987 234 VIVDDLVQSGGTLIECQVLSYLLPAVLLKMCVSEF 268 (274)
Q Consensus 234 lIVDDIi~TG~Tl~~aa~~Lk~~GA~~V~~~~tH~ 268 (274)
||||||+|||.|+.++.+.|++.||++|.+++.+-
T Consensus 96 LlVDDIiDTG~TL~~l~~~l~~~~~~~v~~avL~~ 130 (178)
T PRK15423 96 LIVEDIIDSGNTLSKVREILSLREPKSLAICTLLD 130 (178)
T ss_pred EEEeeecCchHHHHHHHHHHHhCCCCEEEEEEEEE
Confidence 99999999999999999999999999999988764
No 26
>PRK13812 orotate phosphoribosyltransferase; Provisional
Probab=99.50 E-value=2.2e-13 Score=115.43 Aligned_cols=96 Identities=18% Similarity=0.142 Sum_probs=76.6
Q ss_pred hHHHHHHHHhcCCCCCCeEEEecCCChHHHHHHhhc--CCCeEEEEEEEeCCceEEEeeeCCC-CCCeEEEEeccccchH
Q 023987 168 GIPLLKQRLHQLPDANNIVIAFPDDGAWKRFHKMLD--HFPTVVCAKVREGDKRIVRIKEGNP-AGCHVVIVDDLVQSGG 244 (274)
Q Consensus 168 ~~~~la~~l~~~~~~~~~viV~pd~G~~~ra~~~a~--~~~~~~~~k~R~~~~~i~~~~~~~v-~gk~vlIVDDIi~TG~ 244 (274)
..+.+++++.+.+. +.+++++|+.||+++|..++. +.|+.+.+|+++..+.. ....+++ +|++|+||||++|||+
T Consensus 44 ~~~~i~~~l~~~i~-~~d~ivg~~~ggi~lA~~lA~~l~~p~~~~rk~~k~yg~~-~~~~g~~~~g~~VlIVDDvitTG~ 121 (176)
T PRK13812 44 CLRLIAEAFADRID-EDTKLAGVALGAVPLVAVTSVETGVPYVIARKQAKEYGTG-NRIEGRLDEGEEVVVLEDIATTGQ 121 (176)
T ss_pred HHHHHHHHHHHHhc-cCCEEEEeecchHHHHHHHHHHHCCCEEEEeccCCcCCCC-CeEEecCCCcCEEEEEEEeeCCCH
Confidence 35667777766532 337999999999999999986 78888898887654321 1134666 8999999999999999
Q ss_pred HHHHHHHHHHhCCCcEEEEEE
Q 023987 245 TLIECQVLSYLLPAVLLKMCV 265 (274)
Q Consensus 245 Tl~~aa~~Lk~~GA~~V~~~~ 265 (274)
|+.++++.|+++||+.+.++|
T Consensus 122 Tl~~~~~~l~~~Ga~vv~~~v 142 (176)
T PRK13812 122 SAVDAVEALREAGATVNRVLV 142 (176)
T ss_pred HHHHHHHHHHHCCCeEEEEEE
Confidence 999999999999999877765
No 27
>COG1040 ComFC Predicted amidophosphoribosyltransferases [General function prediction only]
Probab=99.50 E-value=5.4e-14 Score=123.59 Aligned_cols=150 Identities=18% Similarity=0.108 Sum_probs=99.6
Q ss_pred CceEEEEeecCCCCCcccc-cc-CCCcccHHHHHHHHhcCCCC-CCCCCEEEEEeCCchh--hhcccCCCCcccccchHH
Q 023987 96 VASFTLVLPFFPTGSFERM-EE-EGDVATAFTMARILSNIPTS-RGGPTSLVIYDIHALQ--ERFYFSDHVLPLFETGIP 170 (274)
Q Consensus 96 a~~i~~viPY~~ysRqdr~-~~-~g~~~~a~~~a~ll~~~~~~-~~g~d~ii~vdlH~~~--~~~ff~~~~~~l~~~~~~ 170 (274)
..+...+..|-+..|+-.. ++ .++..-++.+|++|...... .-.+|.|++||+|..+ .+|| | |++
T Consensus 65 ~~~~~~~~~Y~~~l~~~i~~~Kf~~~~~l~~~la~~l~~~~~~~~~~~~~iVpVPls~~r~~~RGF-N---------Q~~ 134 (225)
T COG1040 65 FERLRSLGSYNGPLRELISQLKFQGDLDLAKLLARLLAKALDDFLEKPDLIVPVPLSPSRLLERGF-N---------QSE 134 (225)
T ss_pred ceeEEEEEEccHHHHHHHHHhhhCCchhHHHHHHHHHHHHHhhccccCCeEEEecCCHHHHHHcCC-C---------HHH
Confidence 3467788888887775332 22 56777788888887542110 1247899999999877 4788 4 789
Q ss_pred HHHHHHhcCCCCCCeEEEecCCChHHHHHHhhcCCCeEEEEEEEeCCceEEEeeeCCCCC-CeEEEEeccccchHHHHHH
Q 023987 171 LLKQRLHQLPDANNIVIAFPDDGAWKRFHKMLDHFPTVVCAKVREGDKRIVRIKEGNPAG-CHVVIVDDLVQSGGTLIEC 249 (274)
Q Consensus 171 ~la~~l~~~~~~~~~viV~pd~G~~~ra~~~a~~~~~~~~~k~R~~~~~i~~~~~~~v~g-k~vlIVDDIi~TG~Tl~~a 249 (274)
.+|+.+...++ .+. ...|.+....+.. .-.++|..+.+-.....+..+. |+|+|||||+|||.|+.++
T Consensus 135 ~la~~l~~~~~--~~~-------~~~r~k~~~~q~~--l~~~~rr~nl~~aF~~~~~~~~~~~vlLvDDV~TTGaTl~~~ 203 (225)
T COG1040 135 LLARALARRLG--KPI-------ALRRVKDTSPQQG--LKALERRRNLKGAFRLKKGIEEPKNVLLVDDVYTTGATLKEA 203 (225)
T ss_pred HHHHHHHHHhC--chH-------HHHHHhccccccc--cchHHHHHhccCCeecCCCCCCCCeEEEEecccccHHHHHHH
Confidence 99999987642 211 3334333332111 1123343332222234445554 9999999999999999999
Q ss_pred HHHHHhCCCcEEEEEEe
Q 023987 250 QVLSYLLPAVLLKMCVS 266 (274)
Q Consensus 250 a~~Lk~~GA~~V~~~~t 266 (274)
++.|++.||++|.+++.
T Consensus 204 ~~~L~~~Ga~~v~~~~l 220 (225)
T COG1040 204 AKLLREAGAKRVFVLTL 220 (225)
T ss_pred HHHHHHcCCceEEEEEE
Confidence 99999999999999874
No 28
>PF00156 Pribosyltran: Phosphoribosyl transferase domain; InterPro: IPR000836 The name PRT comes from phosphoribosyltransferase (PRTase) enzymes, which carry out phosphoryl transfer reactions on 5-phosphoribosyl-alpha1-pyrophosphate PRPP, an activated form of ribose-5-phosphate. Members of Phosphoribosyltransferase (PRT) are catalytic and are regulatory proteins involved in nucleotide synthesis and salvage []. This includes a range of diverse phosphoribosyl transferase enzymes including adenine phosphoribosyltransferase (2.4.2.7 from EC); hypoxanthine-guanine-xanthine phosphoribosyltransferase; hypoxanthine phosphoribosyltransferase (2.4.2.8 from EC); ribose-phosphate pyrophosphokinase (2.7.6.1 from EC); amidophosphoribosyltransferase (2.4.2.14 from EC); orotate phosphoribosyltransferase (2.4.2.10 from EC);uracil phosphoribosyltransferase (2.4.2.9 from EC); and xanthine-guanine phosphoribosyltransferase (2.4.2.22 from EC). Not all PRT proteins are enzymes. For example, in some bacteria PRT proteins regulate the expression of purine and pyrimidine synthetic genes. Members of PRT are defined by the protein fold and by a short 13-residue sequence motif, The motif consists of four hydrophobic amino acids, two acidic amino acids and seven amino acids of variable character, usually including glycine and threonine. The motif has been predicted to be a PRPP-binding site in advance of structural information [, ]. Apart of this motif, different PRT proteins have a low level of sequence identity, less than 15%. The PRT sequence motif is only found in PRTases from the nucleotide synthesis and salvage pathways. Other PRTases, from the tryptophan, histidine and nicotinamide synthetic and salvage pathways, lack the PRT sequence motif and appear to be unrelated to each other and unrelated to the PRT family.; GO: 0009116 nucleoside metabolic process; PDB: 2JBH_A 1Y0B_D 2FXV_B 1GPH_1 1AO0_D 1ORO_B 1VCH_C 2WNS_A 2PRZ_B 2PS1_A ....
Probab=99.49 E-value=2.3e-13 Score=107.86 Aligned_cols=99 Identities=22% Similarity=0.204 Sum_probs=74.6
Q ss_pred hHHHHHHHHhcCCCCCCeEEEecCCChHHHHHHhhc--CCCeEEEEEE----------EeCCce--EEEeeeCCCCCCeE
Q 023987 168 GIPLLKQRLHQLPDANNIVIAFPDDGAWKRFHKMLD--HFPTVVCAKV----------REGDKR--IVRIKEGNPAGCHV 233 (274)
Q Consensus 168 ~~~~la~~l~~~~~~~~~viV~pd~G~~~ra~~~a~--~~~~~~~~k~----------R~~~~~--i~~~~~~~v~gk~v 233 (274)
....+|++|.+. ..+.+.++++..||+..|..++. +.++....+. +..... ........++||+|
T Consensus 13 ~~~~la~~i~~~-~~~~~~ivgi~~~G~~~a~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gk~v 91 (125)
T PF00156_consen 13 LAERLAEQIKES-GFDFDVIVGIPRGGIPLAAALARALGIPLVFVRKRKSYYPGSDKTSREKNNQELFIIDKEDIKGKRV 91 (125)
T ss_dssp HHHHHHHHHHHH-TTTSSEEEEETTTTHHHHHHHHHHHTHEEEEEEEEEEEESEEEEEEEETEEEEEEEEESSSGTTSEE
T ss_pred HHHHHHHHHHHh-CCCCCEEEeehhccHHHHHHHHHHhCCCccceeeeecccccchhhhhccCceEEeecccccccceeE
Confidence 467788888775 35566799999999999999986 3343332221 111111 11234568899999
Q ss_pred EEEeccccchHHHHHHHHHHHhCCCcEEEEEEec
Q 023987 234 VIVDDLVQSGGTLIECQVLSYLLPAVLLKMCVSE 267 (274)
Q Consensus 234 lIVDDIi~TG~Tl~~aa~~Lk~~GA~~V~~~~tH 267 (274)
|||||++|||+|+.++++.|++.||++|.+++.|
T Consensus 92 liVDDvi~tG~Tl~~~~~~L~~~g~~~v~~~vl~ 125 (125)
T PF00156_consen 92 LIVDDVIDTGGTLKEAIELLKEAGAKVVGVAVLV 125 (125)
T ss_dssp EEEEEEESSSHHHHHHHHHHHHTTBSEEEEEEEE
T ss_pred EEEeeeEcccHHHHHHHHHHHhCCCcEEEEEEEC
Confidence 9999999999999999999999999999999875
No 29
>PLN02238 hypoxanthine phosphoribosyltransferase
Probab=99.48 E-value=3.5e-13 Score=115.49 Aligned_cols=101 Identities=16% Similarity=0.095 Sum_probs=79.1
Q ss_pred hHHHHHHHHhcCCCCCCeEEEecCCChHHHHHHhhc--CC---Ce--EEEEEEEeCCc-----eEE--E-eeeCCCCCCe
Q 023987 168 GIPLLKQRLHQLPDANNIVIAFPDDGAWKRFHKMLD--HF---PT--VVCAKVREGDK-----RIV--R-IKEGNPAGCH 232 (274)
Q Consensus 168 ~~~~la~~l~~~~~~~~~viV~pd~G~~~ra~~~a~--~~---~~--~~~~k~R~~~~-----~i~--~-~~~~~v~gk~ 232 (274)
....+|++|.+.+..++++++++..||+.+|..+++ +. ++ .+++.+++.++ +.. . ....+++||+
T Consensus 20 ~i~~lA~~I~~~~~~~~~vivgi~~Gg~~fa~~L~~~L~~~~~~~~i~fi~~~sy~~~~~~~g~~~i~~~~~~~~v~gk~ 99 (189)
T PLN02238 20 RVAELAAQIASDYAGKSPVVLGVATGAFMFLADLVRAIQPLPRGLTVDFIRASSYGGGTESSGVAKVSGADLKIDVKGKH 99 (189)
T ss_pred HHHHHHHHHHHHcCCCCcEEEEEccCCHHHHHHHHHHhCccCCCeEEEEEEeeecCCCccccCceeEecCCCCCCCCCCE
Confidence 456788888876545678999999999999999986 33 33 45666665421 221 1 2345799999
Q ss_pred EEEEeccccchHHHHHHHHHHHhCCCcEEEEEEece
Q 023987 233 VVIVDDLVQSGGTLIECQVLSYLLPAVLLKMCVSEF 268 (274)
Q Consensus 233 vlIVDDIi~TG~Tl~~aa~~Lk~~GA~~V~~~~tH~ 268 (274)
|||||||+|||.|+.++++.|++.||++|.++|.+-
T Consensus 100 VliVDDIidTG~Tl~~~~~~l~~~g~~~v~~avL~d 135 (189)
T PLN02238 100 VLLVEDIVDTGNTLSALVAHLEAKGAASVSVCALLD 135 (189)
T ss_pred EEEEecccchHHHHHHHHHHHHhCCCCEEEEEEEEE
Confidence 999999999999999999999999999999998654
No 30
>PLN02293 adenine phosphoribosyltransferase
Probab=99.47 E-value=6.8e-13 Score=113.48 Aligned_cols=100 Identities=18% Similarity=0.107 Sum_probs=79.5
Q ss_pred hHHHHHHHHhcCCCCCCeEEEecCCChHHHHHHhhc--CCCeEEEEEEEeCCceEE-------------EeeeCCC-CCC
Q 023987 168 GIPLLKQRLHQLPDANNIVIAFPDDGAWKRFHKMLD--HFPTVVCAKVREGDKRIV-------------RIKEGNP-AGC 231 (274)
Q Consensus 168 ~~~~la~~l~~~~~~~~~viV~pd~G~~~ra~~~a~--~~~~~~~~k~R~~~~~i~-------------~~~~~~v-~gk 231 (274)
..+.+++++.+ .+.++|++|+.||+.+|..+|. +.++.+++|.|+.++... ....+++ +|+
T Consensus 50 ~~~~l~~~~~~---~~~d~Ivg~e~~Gi~lA~~lA~~Lg~p~v~~rK~~k~~~~~~~~~~~~~~g~~~l~l~~~~i~~G~ 126 (187)
T PLN02293 50 TIDLFVERYRD---MGISVVAGIEARGFIFGPPIALAIGAKFVPLRKPGKLPGEVISEEYVLEYGTDCLEMHVGAVEPGE 126 (187)
T ss_pred HHHHHHHHHhh---cCCCEEEEeCCCchHHHHHHHHHHCCCEEEEEecCCCCCceEEEEEeccCCceEEEEEcCccCCCC
Confidence 35566666654 3567999999999999999886 678888888876432111 1113566 799
Q ss_pred eEEEEeccccchHHHHHHHHHHHhCCCcEEEEEEeceec
Q 023987 232 HVVIVDDLVQSGGTLIECQVLSYLLPAVLLKMCVSEFEW 270 (274)
Q Consensus 232 ~vlIVDDIi~TG~Tl~~aa~~Lk~~GA~~V~~~~tH~~~ 270 (274)
+|+||||+++||+|+.++++.|+++||..+.++|.|...
T Consensus 127 rVlIVDDvitTG~T~~~~~~~l~~~Ga~~v~~~~~~~~~ 165 (187)
T PLN02293 127 RALVIDDLIATGGTLCAAINLLERAGAEVVECACVIELP 165 (187)
T ss_pred EEEEEeccccchHHHHHHHHHHHHCCCEEEEEEEEEEcC
Confidence 999999999999999999999999999999999999754
No 31
>PRK05205 bifunctional pyrimidine regulatory protein PyrR uracil phosphoribosyltransferase; Provisional
Probab=99.43 E-value=1e-12 Score=111.41 Aligned_cols=101 Identities=13% Similarity=0.078 Sum_probs=76.0
Q ss_pred hHHHHHHHHhcCC-CCCCeEEEecCCChHHHHHHhhcC--------CCeEEEEEEEeCC-----c--eEE--EeeeCCCC
Q 023987 168 GIPLLKQRLHQLP-DANNIVIAFPDDGAWKRFHKMLDH--------FPTVVCAKVREGD-----K--RIV--RIKEGNPA 229 (274)
Q Consensus 168 ~~~~la~~l~~~~-~~~~~viV~pd~G~~~ra~~~a~~--------~~~~~~~k~R~~~-----~--~i~--~~~~~~v~ 229 (274)
....+|+++.+.+ +.+++++++++.||+.++..+++. +++.+++..++.+ + ... ....++++
T Consensus 15 ~i~~la~~i~~~~~~~~~~viv~il~gG~~~a~~La~~L~~~~~~~~~~~~l~~~~y~~~~~~~~~~~~~~~~~l~~~v~ 94 (176)
T PRK05205 15 ALTRIAHEIIERNKGLDNLVLVGIKTRGVWLAERLAERLEQLEGVDVPVGELDITLYRDDLTKKGLHPQVKPTDIPFDIE 94 (176)
T ss_pred HHHHHHHHHHHHcCCCCCeEEEEEccCCHHHHHHHHHHHHHHcCCCCccceEEEEEeecCccccCcccccccccCCCCCC
Confidence 4677888887754 336789999999999999988752 2345554443221 1 111 12356899
Q ss_pred CCeEEEEeccccchHHHHHHHHHHHhCC-CcEEEEEEece
Q 023987 230 GCHVVIVDDLVQSGGTLIECQVLSYLLP-AVLLKMCVSEF 268 (274)
Q Consensus 230 gk~vlIVDDIi~TG~Tl~~aa~~Lk~~G-A~~V~~~~tH~ 268 (274)
||+|||||||+|||+|+.++++.|++.| +++|.+++..-
T Consensus 95 gr~VLIVDDIidTG~Tl~~~~~~L~~~G~~~~v~~avL~~ 134 (176)
T PRK05205 95 GKRVILVDDVLYTGRTIRAALDALFDYGRPARVQLAVLVD 134 (176)
T ss_pred CCEEEEEecccCcHHHHHHHHHHHHhcCCCcEEEEEEEEE
Confidence 9999999999999999999999999999 78998888753
No 32
>TIGR00201 comF comF family protein. This protein is found in species that do (Bacillus subtilis, Haemophilus influenzae) or do not (E. coli, Borrelia burgdorferi) have described systems for natural transformation with exogenous DNA. It is involved in competence for transformation in Bacillus subtilis.
Probab=99.41 E-value=2.7e-13 Score=116.26 Aligned_cols=146 Identities=20% Similarity=0.121 Sum_probs=88.7
Q ss_pred EEEeecCCCCCcccc-cc-CCCcccHHHHHHHHhcC-CCC-CCCCCEEEEEeCCchh--hhcccCCCCcccccchHHHHH
Q 023987 100 TLVLPFFPTGSFERM-EE-EGDVATAFTMARILSNI-PTS-RGGPTSLVIYDIHALQ--ERFYFSDHVLPLFETGIPLLK 173 (274)
Q Consensus 100 ~~viPY~~ysRqdr~-~~-~g~~~~a~~~a~ll~~~-~~~-~~g~d~ii~vdlH~~~--~~~ff~~~~~~l~~~~~~~la 173 (274)
.++..|-+..|+-.. ++ .|+...++.+|+++... ... ...+|.|++||+|..+ .+|| | ++.+||
T Consensus 36 ~~~~~Y~~~~~~li~~~K~~~~~~l~~~l~~~l~~~~~~~~~~~~~~ivpVP~~~~r~~~RGf-n---------q~~~la 105 (190)
T TIGR00201 36 VSVYTYNEPLKELISRFKFRGQAEIIRALASLLSLTVSKAYRDLPDVIVPVPLSKEREWRRGF-N---------QADLLA 105 (190)
T ss_pred EEEEECchHHHHHHHHhccCCChHHHHHHHHHHHHHHHhhccCCCCEEEeCCCCHHHHHHhCC-C---------HHHHHH
Confidence 556677666664222 23 56666777788776431 000 0135889999999865 4788 5 688899
Q ss_pred HHHhcCCCCCCeEEEecCCChHHHHHHhhcCCCeEEEEEEEeCCceEEEeeeC-CCCCCeEEEEeccccchHHHHHHHHH
Q 023987 174 QRLHQLPDANNIVIAFPDDGAWKRFHKMLDHFPTVVCAKVREGDKRIVRIKEG-NPAGCHVVIVDDLVQSGGTLIECQVL 252 (274)
Q Consensus 174 ~~l~~~~~~~~~viV~pd~G~~~ra~~~a~~~~~~~~~k~R~~~~~i~~~~~~-~v~gk~vlIVDDIi~TG~Tl~~aa~~ 252 (274)
+.+.+..+. . ...+.+.+. ..+... -.++|..+..-...... +++||+|+|||||+|||.|+.++++.
T Consensus 106 ~~l~~~~~~----~----~~~l~r~~~-~~Q~~l--~~~~R~~n~~~~f~~~~~~~~~~~vllvDDV~TTGaTl~~~~~~ 174 (190)
T TIGR00201 106 QCLSRWLFN----Y----HNIVIRLNN-ETQSKL--KATLRFLNLENAFDLKNNSFQGRNIVLVDDVVTTGATLHEIARL 174 (190)
T ss_pred HHHHHHhCC----C----cceEEEecc-cccccC--CHHHHHHHHhCcEEccCCCCCCCEEEEEeeeeccHHHHHHHHHH
Confidence 988764211 0 011111111 100000 01223222111111222 58999999999999999999999999
Q ss_pred HHhCCCcEEEEEEe
Q 023987 253 SYLLPAVLLKMCVS 266 (274)
Q Consensus 253 Lk~~GA~~V~~~~t 266 (274)
|+++||.+|+++|.
T Consensus 175 L~~~Ga~~V~~~~l 188 (190)
T TIGR00201 175 LLELGAASVQVWTL 188 (190)
T ss_pred HHHcCCCEEEEEEE
Confidence 99999999999874
No 33
>PRK02304 adenine phosphoribosyltransferase; Provisional
Probab=99.40 E-value=2.5e-12 Score=108.84 Aligned_cols=86 Identities=20% Similarity=0.027 Sum_probs=68.2
Q ss_pred CCeEEEecCCChHHHHHHhhc--CCCeEEEEEEEeCCce------------EEEeeeC--CCCCCeEEEEeccccchHHH
Q 023987 183 NNIVIAFPDDGAWKRFHKMLD--HFPTVVCAKVREGDKR------------IVRIKEG--NPAGCHVVIVDDLVQSGGTL 246 (274)
Q Consensus 183 ~~~viV~pd~G~~~ra~~~a~--~~~~~~~~k~R~~~~~------------i~~~~~~--~v~gk~vlIVDDIi~TG~Tl 246 (274)
+.++|++|+.||+.+|..++. +.++.+++|.++.... -.....+ .++|++|||||||+|||+|+
T Consensus 51 ~~d~Ivgv~~~Gi~~a~~la~~l~~p~~~~rk~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~g~~VLIVDDivtTG~Tl 130 (175)
T PRK02304 51 DIDKIVGIEARGFIFGAALAYKLGIGFVPVRKPGKLPRETISESYELEYGTDTLEIHKDAIKPGDRVLIVDDLLATGGTL 130 (175)
T ss_pred CCCEEEEEccchHHHHHHHHHHhCCCEEEEEcCCCCCCceEeEEEecccCceEEEEchhhcCCCCEEEEEeCCccccHHH
Confidence 568999999999999999986 7788777766543211 0111222 37999999999999999999
Q ss_pred HHHHHHHHhCCCcEEEEEEece
Q 023987 247 IECQVLSYLLPAVLLKMCVSEF 268 (274)
Q Consensus 247 ~~aa~~Lk~~GA~~V~~~~tH~ 268 (274)
.++++.|+++||+.|.++|.+-
T Consensus 131 ~~~~~~l~~~Ga~~v~v~vl~~ 152 (175)
T PRK02304 131 EAAIKLLERLGAEVVGAAFVIE 152 (175)
T ss_pred HHHHHHHHHcCCEEEEEEEEEE
Confidence 9999999999999998887654
No 34
>PRK02277 orotate phosphoribosyltransferase-like protein; Provisional
Probab=99.38 E-value=3.6e-12 Score=110.24 Aligned_cols=98 Identities=15% Similarity=0.029 Sum_probs=73.8
Q ss_pred HHHHHHHHhcCCCCCCeEEEecCCChHHHHHHhhc--CCCeEEEEEEEeCCce---E---EEeeeCCCCCCeEEEEeccc
Q 023987 169 IPLLKQRLHQLPDANNIVIAFPDDGAWKRFHKMLD--HFPTVVCAKVREGDKR---I---VRIKEGNPAGCHVVIVDDLV 240 (274)
Q Consensus 169 ~~~la~~l~~~~~~~~~viV~pd~G~~~ra~~~a~--~~~~~~~~k~R~~~~~---i---~~~~~~~v~gk~vlIVDDIi 240 (274)
...+++.+... +.+.++|+++..||+++|..++. +.++..+++.+...+. . .....++++||+|+||||++
T Consensus 72 ~~~la~~i~~~-~~~~D~Ivgi~~gG~~~A~~lA~~L~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~gk~VlIVDDVi 150 (200)
T PRK02277 72 ASAMADMLEKE-DEEVDVVVGIAKSGVPLATLVADELGKDLAIYHPKKWDHGEGEKKTGSFSRNFASVEGKRCVIVDDVI 150 (200)
T ss_pred HHHHHHHHHhc-CCCCCEEEeeccCCHHHHHHHHHHhCCCcEEEecccccccccccccceeccccccCCcCEEEEEeecc
Confidence 45566655332 34567999999999999999986 6677666655432111 1 11223578999999999999
Q ss_pred cchHHHHHHHHHHHhCCCcEEEEEEec
Q 023987 241 QSGGTLIECQVLSYLLPAVLLKMCVSE 267 (274)
Q Consensus 241 ~TG~Tl~~aa~~Lk~~GA~~V~~~~tH 267 (274)
|||+|+.++++.|+++||+.+.++|..
T Consensus 151 tTG~Tl~~ai~~l~~~Ga~~v~v~vlv 177 (200)
T PRK02277 151 TSGTTMKETIEYLKEHGGKPVAVVVLI 177 (200)
T ss_pred CchHHHHHHHHHHHHcCCEEEEEEEEE
Confidence 999999999999999999999888754
No 35
>PTZ00271 hypoxanthine-guanine phosphoribosyltransferase; Provisional
Probab=99.38 E-value=4.2e-12 Score=110.38 Aligned_cols=103 Identities=15% Similarity=0.100 Sum_probs=78.5
Q ss_pred chHHHHHHHHhcCCC------CCCeEEEecCCChHHHHHHhhcC-----CC--eEEEEEEEeCC-----ceE--EEeeeC
Q 023987 167 TGIPLLKQRLHQLPD------ANNIVIAFPDDGAWKRFHKMLDH-----FP--TVVCAKVREGD-----KRI--VRIKEG 226 (274)
Q Consensus 167 ~~~~~la~~l~~~~~------~~~~viV~pd~G~~~ra~~~a~~-----~~--~~~~~k~R~~~-----~~i--~~~~~~ 226 (274)
.....||++|.+.+. .+++++++...||+.+|.++++. .+ +.+++-.++.+ +.+ ......
T Consensus 35 ~~i~~LA~~I~~~~~~~~~~~~~~~vivgVlkGg~~fa~dL~r~L~~~~~~~~vdfi~vssY~~~~~s~g~~~i~~~~~~ 114 (211)
T PTZ00271 35 AATAKCAKKIAEDYRSFKLTTENPLYLLCVLKGSFIFTADLARFLADEGVPVKVEFICASSYGTGVETSGQVRMLLDVRD 114 (211)
T ss_pred HHHHHHHHHHHHHhhhccccCCCCeEEEEEcCCCHHHHHHHHHHhcccCCCeeEEEEEEEecCCCCcccCceEEecCCCC
Confidence 356788999887653 24678999999999999998752 33 44555444432 122 123355
Q ss_pred CCCCCeEEEEeccccchHHHHHHHHHHHhCCCcEEEEEEecee
Q 023987 227 NPAGCHVVIVDDLVQSGGTLIECQVLSYLLPAVLLKMCVSEFE 269 (274)
Q Consensus 227 ~v~gk~vlIVDDIi~TG~Tl~~aa~~Lk~~GA~~V~~~~tH~~ 269 (274)
+++||+|||||||+|||.||.++.+.|++.||++|.++|..-.
T Consensus 115 ~i~gk~VLIVDDIvDTG~TL~~v~~~l~~~~p~svk~avL~dK 157 (211)
T PTZ00271 115 SVENRHILIVEDIVDSAITLQYLMRFMLAKKPASLKTVVLLDK 157 (211)
T ss_pred CCCCCEEEEEecccCCHHHHHHHHHHHHhcCCCEEEEEEEEEc
Confidence 8999999999999999999999999999999999999986543
No 36
>PTZ00149 hypoxanthine phosphoribosyltransferase; Provisional
Probab=99.37 E-value=3.6e-12 Score=112.71 Aligned_cols=101 Identities=16% Similarity=0.187 Sum_probs=77.8
Q ss_pred chHHHHHHHHhcCCCCCCeEEEecCCChHHHHHHhhcCC-----------C--e---EEEEEEEeCC----ceE--EEee
Q 023987 167 TGIPLLKQRLHQLPDANNIVIAFPDDGAWKRFHKMLDHF-----------P--T---VVCAKVREGD----KRI--VRIK 224 (274)
Q Consensus 167 ~~~~~la~~l~~~~~~~~~viV~pd~G~~~ra~~~a~~~-----------~--~---~~~~k~R~~~----~~i--~~~~ 224 (274)
.....||.+|.+.++.+++++++..+||+.++.++.+.+ + . .+++-.++.+ +++ ....
T Consensus 65 ~rI~~LA~~I~~dy~~~~~vilgILkGg~~FaadL~~~L~~~~~~~~~~~~~~~~~~dfi~vsSY~~~~s~g~v~i~~~~ 144 (241)
T PTZ00149 65 DRVEKLAYDIKQVYGNEELHILCILKGSRGFFSALVDYLNRIHNYSSTESPKPPYQEHYVRVKSYCNDESTGKLEIVSDD 144 (241)
T ss_pred HHHHHHHHHHHHHcCCCCeEEEEECCCCHHHHHHHHHHHhhhhhccccccCcccccccEEEEEEccCCCcCCceEEeccc
Confidence 356789999988776788999999999999999876411 1 2 4444334322 222 1223
Q ss_pred eCCCCCCeEEEEeccccchHHHHHHHHHHHhCCCcEEEEEEec
Q 023987 225 EGNPAGCHVVIVDDLVQSGGTLIECQVLSYLLPAVLLKMCVSE 267 (274)
Q Consensus 225 ~~~v~gk~vlIVDDIi~TG~Tl~~aa~~Lk~~GA~~V~~~~tH 267 (274)
..+++||+|||||||+|||.|+.++++.|++.|+++|.++|..
T Consensus 145 ~~~l~gk~VLIVDDIidTG~Tl~~~~~~L~~~g~~~V~va~L~ 187 (241)
T PTZ00149 145 LSCLKDKHVLIVEDIIDTGNTLVKFCEYLKKFEPKTIRIATLF 187 (241)
T ss_pred ccccCCCEEEEEEeEeChHHHHHHHHHHHHhcCCCEEEEEEEE
Confidence 4579999999999999999999999999999999999998863
No 37
>TIGR01367 pyrE_Therm orotate phosphoribosyltransferase, Thermus family. This model represents a distinct clade of orotate phosphoribosyltransferases. Members include the experimentally determined example from Thermus aquaticus and additional examples from Caulobacter crescentus, Helicobacter pylori, Mesorhizobium loti, and related species.
Probab=99.37 E-value=8.3e-12 Score=106.84 Aligned_cols=95 Identities=15% Similarity=0.081 Sum_probs=71.9
Q ss_pred hHHHHHHHHhcCCCCCCeEEEecCCChHHHHHHhhc--CCCeEEEEEEEeCCceEEEeee-CCCCCCeEEEEeccccchH
Q 023987 168 GIPLLKQRLHQLPDANNIVIAFPDDGAWKRFHKMLD--HFPTVVCAKVREGDKRIVRIKE-GNPAGCHVVIVDDLVQSGG 244 (274)
Q Consensus 168 ~~~~la~~l~~~~~~~~~viV~pd~G~~~ra~~~a~--~~~~~~~~k~R~~~~~i~~~~~-~~v~gk~vlIVDDIi~TG~ 244 (274)
....+++++.+. +.+.++|++++.||+.+|..++. +.++.+.+|.+ +....... ...+||+|||||||+|||+
T Consensus 44 ~~~~La~~i~~~-~~~~d~Ivgi~~gGi~~A~~la~~L~~~~i~~~k~~---~~~~~~~~~~l~~G~~VLIVDDIi~TG~ 119 (187)
T TIGR01367 44 LGGELAQKILDY-GLKVDFIVGPAMGGVILGYEVARQLSVRSIFAEREG---GGMKLRRGFAVKPGEKFVAVEDVVTTGG 119 (187)
T ss_pred HHHHHHHHHHHh-CCCCCEEEEEccCcHHHHHHHHHHhCCCeEEEEEeC---CcEEEeecccCCCCCEEEEEEeeecchH
Confidence 456677777542 34678999999999999999987 56666565544 22211111 1248999999999999999
Q ss_pred HHHHHHHHHHhCCCcEEEEEEe
Q 023987 245 TLIECQVLSYLLPAVLLKMCVS 266 (274)
Q Consensus 245 Tl~~aa~~Lk~~GA~~V~~~~t 266 (274)
|+.++++.|+++||+.|.++|.
T Consensus 120 Tl~~a~~~l~~~Ga~vv~~~vl 141 (187)
T TIGR01367 120 SLLEAIRAIEGQGGQVVGLACI 141 (187)
T ss_pred HHHHHHHHHHHcCCeEEEEEEE
Confidence 9999999999999998877664
No 38
>TIGR01090 apt adenine phosphoribosyltransferase. A phylogenetic analysis suggested omitting the bi-directional best hit homologs from the spirochetes from the seed for this model and making only tentative predictions of adenine phosphoribosyltransferase function for this lineage.
Probab=99.36 E-value=6.7e-12 Score=105.66 Aligned_cols=96 Identities=24% Similarity=0.167 Sum_probs=70.2
Q ss_pred hHHHHHHHHhcCCCCCCeEEEecCCChHHHHHHhhc--CCCeEEEEEEEeCCc-------------e-EEEeeeCCCCCC
Q 023987 168 GIPLLKQRLHQLPDANNIVIAFPDDGAWKRFHKMLD--HFPTVVCAKVREGDK-------------R-IVRIKEGNPAGC 231 (274)
Q Consensus 168 ~~~~la~~l~~~~~~~~~viV~pd~G~~~ra~~~a~--~~~~~~~~k~R~~~~-------------~-i~~~~~~~v~gk 231 (274)
....+++.+.+ .+.+++++++.+|+..|..++. +.++..++|.+.... . +........+||
T Consensus 34 ~~~~la~~i~~---~~~d~ivgi~~~G~~~A~~la~~L~~~~~~i~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gk 110 (169)
T TIGR01090 34 LIDLLVERYKD---ANIDYIVGPEARGFIFGAALAYKLGVGFVPVRKPGKLPGETISASYDLEYGKDQLEIHKDAIKPGQ 110 (169)
T ss_pred HHHHHHHHhcc---CCCCEEEeehhccHHHHHHHHHHHCCCEEEEEeCCCCCCceeeeEEeeccCceEEEEehhhcCCcC
Confidence 35556666644 3457999999999999999986 667666655432111 1 111111246999
Q ss_pred eEEEEeccccchHHHHHHHHHHHhCCCcEEEEEEe
Q 023987 232 HVVIVDDLVQSGGTLIECQVLSYLLPAVLLKMCVS 266 (274)
Q Consensus 232 ~vlIVDDIi~TG~Tl~~aa~~Lk~~GA~~V~~~~t 266 (274)
+|||||||+|||+|+.++++.|+++||+.|.+++.
T Consensus 111 ~VLIVDDIitTG~Tl~~a~~~L~~~Ga~~v~~~~l 145 (169)
T TIGR01090 111 RVLIVDDLLATGGTAEATDELIRKLGGEVVEAAFL 145 (169)
T ss_pred EEEEEeccccchHHHHHHHHHHHHcCCEEEEEEEE
Confidence 99999999999999999999999999998887664
No 39
>PRK13809 orotate phosphoribosyltransferase; Provisional
Probab=99.35 E-value=5.1e-12 Score=109.60 Aligned_cols=98 Identities=18% Similarity=0.130 Sum_probs=74.8
Q ss_pred HHHHHHHHhcCC-CCCCeEEEecCCChHHHHHHhhc--CCCeEEEEEEEeCCceEE-EeeeCC-CCCCeEEEEeccccch
Q 023987 169 IPLLKQRLHQLP-DANNIVIAFPDDGAWKRFHKMLD--HFPTVVCAKVREGDKRIV-RIKEGN-PAGCHVVIVDDLVQSG 243 (274)
Q Consensus 169 ~~~la~~l~~~~-~~~~~viV~pd~G~~~ra~~~a~--~~~~~~~~k~R~~~~~i~-~~~~~~-v~gk~vlIVDDIi~TG 243 (274)
...+++.+.+.+ +.+.++|++|+.||+++|..++. +.|+.+.+|.++..+... ....+. .+|++|+||||++|||
T Consensus 52 l~~i~~~l~~~~~~~~~d~IvG~~~~Gi~~A~~vA~~l~~p~~~~RK~~K~~G~~~~~~~~g~~~~g~~VlIVDDViTTG 131 (206)
T PRK13809 52 LQTIATLIWRLRPSFNSSLLCGVPYTALTLATSISLKYNIPMVLRRKELKNVDPSDAIKVEGLFTPGQTCLVINDMVSSG 131 (206)
T ss_pred HHHHHHHHHHHhccCCCCEEEEecCccHHHHHHHHHHhCCCEEEEeCCCCCCCCcCEEEEccccCCCCEEEEEEeccccC
Confidence 344455554432 23568999999999999999986 678888888776654321 112443 5899999999999999
Q ss_pred HHHHHHHHHHHhCCCcEEEEEEe
Q 023987 244 GTLIECQVLSYLLPAVLLKMCVS 266 (274)
Q Consensus 244 ~Tl~~aa~~Lk~~GA~~V~~~~t 266 (274)
+|+.++++.|+++|+..+.++|.
T Consensus 132 ~Ti~~a~~~L~~~G~~vv~v~vl 154 (206)
T PRK13809 132 KSIIETAVALEEEGLVVREALVF 154 (206)
T ss_pred HHHHHHHHHHHHCCCEEEEEEEE
Confidence 99999999999999997777654
No 40
>PRK00455 pyrE orotate phosphoribosyltransferase; Validated
Probab=99.34 E-value=9.9e-12 Score=107.55 Aligned_cols=100 Identities=18% Similarity=0.182 Sum_probs=76.1
Q ss_pred hHHHHHHHHhcCCCCCCeEEEecCCChHHHHHHhhc--CCCeEEEEEEEeCCceEEEeeeC-CCCCCeEEEEeccccchH
Q 023987 168 GIPLLKQRLHQLPDANNIVIAFPDDGAWKRFHKMLD--HFPTVVCAKVREGDKRIVRIKEG-NPAGCHVVIVDDLVQSGG 244 (274)
Q Consensus 168 ~~~~la~~l~~~~~~~~~viV~pd~G~~~ra~~~a~--~~~~~~~~k~R~~~~~i~~~~~~-~v~gk~vlIVDDIi~TG~ 244 (274)
....+++.+.+.. .+.++|++++.||+.+|..++. +.++.+.+|.++..+.. ....+ ..+|++|+||||+++||+
T Consensus 50 ~~~~la~~i~~~~-~~~d~Ivgi~~gG~~~A~~la~~L~~~~~~~rk~~~~~g~~-~~~~~~~~~g~~VliVDDvi~tG~ 127 (202)
T PRK00455 50 LGRFLAEAIKDSG-IEFDVVAGPATGGIPLAAAVARALDLPAIFVRKEAKDHGEG-GQIEGRRLFGKRVLVVEDVITTGG 127 (202)
T ss_pred HHHHHHHHHHhcC-CCCCEEEecccCcHHHHHHHHHHhCCCEEEEecccCCCCCC-ceEEccCCCCCEEEEEecccCCcH
Confidence 3555666665532 3556999999999999999986 67887777765433211 11123 468999999999999999
Q ss_pred HHHHHHHHHHhCCCcEEEEEEecee
Q 023987 245 TLIECQVLSYLLPAVLLKMCVSEFE 269 (274)
Q Consensus 245 Tl~~aa~~Lk~~GA~~V~~~~tH~~ 269 (274)
|+.++++.|++.||+.+.++|....
T Consensus 128 Tl~~~~~~l~~~Ga~~v~~~vlv~~ 152 (202)
T PRK00455 128 SVLEAVEAIRAAGAEVVGVAVIVDR 152 (202)
T ss_pred HHHHHHHHHHHcCCEEEEEEEEEEC
Confidence 9999999999999999888876543
No 41
>TIGR00336 pyrE orotate phosphoribosyltransferase. The conserved Lys (K) residue at position 101 of the seed alignment has been proposed as the active site for the enzyme.
Probab=99.33 E-value=1e-11 Score=104.99 Aligned_cols=95 Identities=17% Similarity=0.126 Sum_probs=71.4
Q ss_pred HHHHHHHHhcCCCCCCeEEEecCCChHHHHHHhhc--CCC-----eEEEEEEEeCCceEEEeeeCC-CCCCeEEEEeccc
Q 023987 169 IPLLKQRLHQLPDANNIVIAFPDDGAWKRFHKMLD--HFP-----TVVCAKVREGDKRIVRIKEGN-PAGCHVVIVDDLV 240 (274)
Q Consensus 169 ~~~la~~l~~~~~~~~~viV~pd~G~~~ra~~~a~--~~~-----~~~~~k~R~~~~~i~~~~~~~-v~gk~vlIVDDIi 240 (274)
...+++.+.+. .+.++|++|+.||+.+|..++. +.+ +.+.+|.++..+.. ....+. .+|++|+||||++
T Consensus 42 ~~~~~~~~~~~--~~~d~Ivg~~~gG~~~A~~la~~l~~~~~~~~~~~~rk~~k~~g~~-~~~~g~~~~g~~VlIVDDvi 118 (173)
T TIGR00336 42 ARYAAAIIKSH--LEFDVIAGPALGGIPIATAVSVKLAKPGGDIPLCFNRKEAKDHGEG-GNIEGELLEGDKVVVVEDVI 118 (173)
T ss_pred HHHHHHHHHhc--CCCCEEEccccChHHHHHHHHHHhcCcCCCceEEEEcCCcccCCCC-CceecCCCCCCEEEEEeccc
Confidence 44455555432 4678999999999999999986 556 67777776543321 112344 4899999999999
Q ss_pred cchHHHHHHHHHHHhCCCcEEEEEEe
Q 023987 241 QSGGTLIECQVLSYLLPAVLLKMCVS 266 (274)
Q Consensus 241 ~TG~Tl~~aa~~Lk~~GA~~V~~~~t 266 (274)
+||+|+.++++.|+++||..+.++|.
T Consensus 119 ~TG~Tl~~a~~~l~~~Ga~v~~~~vl 144 (173)
T TIGR00336 119 TTGTSILEAVEIIQAAGGQVAGVIIA 144 (173)
T ss_pred cChHHHHHHHHHHHHcCCeEEEEEEE
Confidence 99999999999999999988777653
No 42
>PRK07322 adenine phosphoribosyltransferase; Provisional
Probab=99.32 E-value=2e-11 Score=103.67 Aligned_cols=97 Identities=22% Similarity=0.213 Sum_probs=70.5
Q ss_pred HHHHHHHhcCCCCCCeEEEecCCChHHHHHHhhc--CCCeEEEEEEEeCC--ce----E---------EEee----eCCC
Q 023987 170 PLLKQRLHQLPDANNIVIAFPDDGAWKRFHKMLD--HFPTVVCAKVREGD--KR----I---------VRIK----EGNP 228 (274)
Q Consensus 170 ~~la~~l~~~~~~~~~viV~pd~G~~~ra~~~a~--~~~~~~~~k~R~~~--~~----i---------~~~~----~~~v 228 (274)
..+++.+.+.+..+.++|++++.||+.+|..++. +.++...+|.+... .. . .... ..++
T Consensus 39 ~~~~~~La~~l~~~~d~Iv~v~~gGiplA~~lA~~L~~p~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (178)
T PRK07322 39 EAAAEALAKRLPTEVDVLVTPETKGIPLAHALSRRLGKPYVVARKSRKPYMQDPIIQEVVSITTGKPQLLVLDGADAEKL 118 (178)
T ss_pred HHHHHHHHHHcCCCCCEEEEeccCCHHHHHHHHHHHCCCEEEEEEeCCCCCCCceEEEEEEEEeccceEEEecCcccccc
Confidence 3444444443322557999999999999999986 67776666655321 10 0 0001 1247
Q ss_pred CCCeEEEEeccccchHHHHHHHHHHHhCCCcEEEEEEe
Q 023987 229 AGCHVVIVDDLVQSGGTLIECQVLSYLLPAVLLKMCVS 266 (274)
Q Consensus 229 ~gk~vlIVDDIi~TG~Tl~~aa~~Lk~~GA~~V~~~~t 266 (274)
+||+|+||||+++||+|+.++++.|+++||+.|.+++.
T Consensus 119 ~gk~VLIVDDiitTG~Tl~aa~~~L~~~GA~~V~~~~v 156 (178)
T PRK07322 119 KGKRVAIVDDVVSTGGTLTALERLVERAGGQVVAKAAI 156 (178)
T ss_pred CCCEEEEEeccccccHHHHHHHHHHHHcCCEEEEEEEE
Confidence 89999999999999999999999999999999888765
No 43
>PRK12560 adenine phosphoribosyltransferase; Provisional
Probab=99.30 E-value=2e-11 Score=104.53 Aligned_cols=97 Identities=14% Similarity=0.036 Sum_probs=72.2
Q ss_pred HHHHHHHhcCCCCCCeEEEecCCChHHHHHHhhc--CCCeEEEEEEEeCCc------------eEE--EeeeCCCCCCeE
Q 023987 170 PLLKQRLHQLPDANNIVIAFPDDGAWKRFHKMLD--HFPTVVCAKVREGDK------------RIV--RIKEGNPAGCHV 233 (274)
Q Consensus 170 ~~la~~l~~~~~~~~~viV~pd~G~~~ra~~~a~--~~~~~~~~k~R~~~~------------~i~--~~~~~~v~gk~v 233 (274)
+++++.+.+..+.+.++|++|+.||+.+|..+|. +.|+.+++|.|.... ... ....+..+|++|
T Consensus 38 ~~~~~~l~~~~~~~~D~Ivg~e~~Gi~lA~~vA~~l~~p~~~~rk~~~~~~~~~~~~~~~~~~~~eg~~~~~~~~~G~rV 117 (187)
T PRK12560 38 KETAKEIIKYIDKDIDKIVTEEDKGAPLATPVSLLSGKPLAMARWYPYSLSELNYNVVEIGSEYFEGVVYLNGIEKGDRV 117 (187)
T ss_pred HHHHHHHHHHhCCCCCEEEEEccccHHHHHHHHHhhCCCEEEeccCCCcccceeEEeeeeeccceeeeeEccCCCCcCEE
Confidence 3344444433334567999999999999999886 678888877664321 011 112345689999
Q ss_pred EEEeccccchHHHHHHHHHHHhCCCcEEEEEEe
Q 023987 234 VIVDDLVQSGGTLIECQVLSYLLPAVLLKMCVS 266 (274)
Q Consensus 234 lIVDDIi~TG~Tl~~aa~~Lk~~GA~~V~~~~t 266 (274)
+||||+++||+|+.++++.|+++||..+.++|.
T Consensus 118 lIVDDvitTG~T~~~ai~ll~~aGa~vv~v~~v 150 (187)
T PRK12560 118 AIIDDTLSTGGTVIALIKAIENSGGIVSDVICV 150 (187)
T ss_pred EEEEeccccCHHHHHHHHHHHHCCCEEEEEEEE
Confidence 999999999999999999999999998877663
No 44
>PRK08525 amidophosphoribosyltransferase; Provisional
Probab=99.29 E-value=1.9e-11 Score=117.55 Aligned_cols=100 Identities=15% Similarity=0.123 Sum_probs=70.9
Q ss_pred HHHHHHhcCCC-CCCeEEEecCCChHHHHHHhhc--CCCe--EEEEEEEeC-----Cc------eEEE--eeeC-CCCCC
Q 023987 171 LLKQRLHQLPD-ANNIVIAFPDDGAWKRFHKMLD--HFPT--VVCAKVREG-----DK------RIVR--IKEG-NPAGC 231 (274)
Q Consensus 171 ~la~~l~~~~~-~~~~viV~pd~G~~~ra~~~a~--~~~~--~~~~k~R~~-----~~------~i~~--~~~~-~v~gk 231 (274)
.+++.|.+... ..+.++..|| +|..+|..+++ +.|+ .+++|.+.. .. .... ...+ .++||
T Consensus 263 ~~G~~La~~~~~~~d~Vv~vPd-~g~~~A~~~A~~lgip~~~~l~rk~~~~r~~i~~~qr~rn~~~~~~~~~~~~~v~gK 341 (445)
T PRK08525 263 KMGEELAKKFPIKADFVVPVPD-SGVPAAIGYAQESGIPFEMAIVRNHYVGRTFIEPTQEMRNLKVKLKLNPMSKVLEGK 341 (445)
T ss_pred HHHHHHHHHhcccCCeEEECCc-hHHHHHHHHHHHhCCCccceEEEeeccccccCCHHHHHHhhheeEEecccccccCCC
Confidence 34444444321 2346788888 45888998886 5555 445554321 11 0111 1223 48999
Q ss_pred eEEEEeccccchHHHHHHHHHHHhCCCcEEEEEEeceece
Q 023987 232 HVVIVDDLVQSGGTLIECQVLSYLLPAVLLKMCVSEFEWV 271 (274)
Q Consensus 232 ~vlIVDDIi~TG~Tl~~aa~~Lk~~GA~~V~~~~tH~~~~ 271 (274)
+|+||||++|||+|+.++++.|+++||++|++++||+.++
T Consensus 342 ~VlLVDDvitTG~Tl~~a~~~Lr~aGA~~V~v~~~hp~~~ 381 (445)
T PRK08525 342 RIVVIDDSIVRGTTSKKIVSLLRAAGAKEIHLRIACPEIK 381 (445)
T ss_pred eEEEEecccCcHHHHHHHHHHHHhcCCCEEEEEEECCCcC
Confidence 9999999999999999999999999999999999999875
No 45
>PRK00129 upp uracil phosphoribosyltransferase; Reviewed
Probab=99.22 E-value=1.1e-10 Score=101.70 Aligned_cols=84 Identities=15% Similarity=0.090 Sum_probs=69.4
Q ss_pred CCeEEEecCCChHHHHHHhhcC---CCeEEEEEEEeCCc-e-E--EEeeeCCCCCCeEEEEeccccchHHHHHHHHHHHh
Q 023987 183 NNIVIAFPDDGAWKRFHKMLDH---FPTVVCAKVREGDK-R-I--VRIKEGNPAGCHVVIVDDLVQSGGTLIECQVLSYL 255 (274)
Q Consensus 183 ~~~viV~pd~G~~~ra~~~a~~---~~~~~~~k~R~~~~-~-i--~~~~~~~v~gk~vlIVDDIi~TG~Tl~~aa~~Lk~ 255 (274)
+++++|+++.||+.++..+++. .++.++..+|+... . . ...+..+++||+|||+|||++||+|+..+++.|++
T Consensus 70 ~~~vvV~IlrgG~~~~~~l~~~l~~~~~~~i~~~r~~~t~~~~~~~~~lp~~i~~~~VllvDd~laTG~Tl~~ai~~L~~ 149 (209)
T PRK00129 70 KKLVIVPILRAGLGMVDGVLKLIPSARVGHIGLYRDEETLEPVEYYVKLPEDIDERTVIVVDPMLATGGSAIAAIDLLKK 149 (209)
T ss_pred CeEEEEEEeCCCHHHHHHHHHhCCcCeeeeEEEEeCCCCCCCEEEEeeCCCcCCCCEEEEECCcccchHHHHHHHHHHHH
Confidence 4689999999999999998863 45666777775432 1 1 22446689999999999999999999999999999
Q ss_pred CCCcEEEEEEe
Q 023987 256 LPAVLLKMCVS 266 (274)
Q Consensus 256 ~GA~~V~~~~t 266 (274)
.|+++|.++|.
T Consensus 150 ~G~~~I~~~~l 160 (209)
T PRK00129 150 RGAKNIKVLCL 160 (209)
T ss_pred cCCCEEEEEEE
Confidence 99999999886
No 46
>PRK09219 xanthine phosphoribosyltransferase; Validated
Probab=99.18 E-value=2.1e-10 Score=98.27 Aligned_cols=84 Identities=13% Similarity=0.035 Sum_probs=65.7
Q ss_pred CCCeEEEecCCChHHHHHHhhc--CCCeEEEEEEEeCC--ce-EE-------------Eeee-CCC-CCCeEEEEecccc
Q 023987 182 ANNIVIAFPDDGAWKRFHKMLD--HFPTVVCAKVREGD--KR-IV-------------RIKE-GNP-AGCHVVIVDDLVQ 241 (274)
Q Consensus 182 ~~~~viV~pd~G~~~ra~~~a~--~~~~~~~~k~R~~~--~~-i~-------------~~~~-~~v-~gk~vlIVDDIi~ 241 (274)
.+.++|++++.+|+..|..+|. +.|+.+++|..+.. +. .. ..+. ..+ +|++|+||||+++
T Consensus 49 ~~~D~Ivg~e~~GiplA~~lA~~Lg~p~v~vRK~~k~~~~~~~~~~~~~~~~~~~~~~l~i~~~~i~~G~rVlIVDDvia 128 (189)
T PRK09219 49 EGITKILTIEASGIAPAVMAALALGVPVVFAKKKKSLTLTDDVYTATVYSFTKQVTSTVSVSKKFLSEGDRVLIIDDFLA 128 (189)
T ss_pred CCCCEEEEEccccHHHHHHHHHHHCCCEEEEEECCCCCCCCceEEEEEeeeccCceEEEEEEhhhCCCCCEEEEEeehhh
Confidence 3557999999999999999986 78999998876442 11 00 0111 223 7999999999999
Q ss_pred chHHHHHHHHHHHhCCCcEEEEEE
Q 023987 242 SGGTLIECQVLSYLLPAVLLKMCV 265 (274)
Q Consensus 242 TG~Tl~~aa~~Lk~~GA~~V~~~~ 265 (274)
||+|+.++++.++++||.-+.+++
T Consensus 129 TGgT~~a~~~lv~~aGa~vvgv~~ 152 (189)
T PRK09219 129 NGQAALGLIDIIEQAGAKVAGIGI 152 (189)
T ss_pred cChHHHHHHHHHHHCCCEEEEEEE
Confidence 999999999999999998776655
No 47
>COG0856 Orotate phosphoribosyltransferase homologs [Nucleotide transport and metabolism]
Probab=99.18 E-value=1.3e-10 Score=96.42 Aligned_cols=98 Identities=13% Similarity=0.003 Sum_probs=75.5
Q ss_pred HHHHHHHHhcCCCCCCeEEEecCCChHHHHHHhhc--CCCeEEE--EEEEeCCc----eEEEeeeCCCCCCeEEEEeccc
Q 023987 169 IPLLKQRLHQLPDANNIVIAFPDDGAWKRFHKMLD--HFPTVVC--AKVREGDK----RIVRIKEGNPAGCHVVIVDDLV 240 (274)
Q Consensus 169 ~~~la~~l~~~~~~~~~viV~pd~G~~~ra~~~a~--~~~~~~~--~k~R~~~~----~i~~~~~~~v~gk~vlIVDDIi 240 (274)
+..+++.+.+..+.+-+++|+....|++.|..+|. +.++++. +|.|+..+ ..++...+.++||+|+||||++
T Consensus 72 s~am~Dm~m~~~~~evDvVvGIa~sGvPlAtmvA~elg~elaiY~PrK~~~de~~~~~G~iS~NFa~V~gK~cvIVDDvi 151 (203)
T COG0856 72 SEAMADMIMEKVSFEVDVVVGIAISGVPLATMVAYELGKELAIYHPRKHRKDEGAGKGGSISSNFASVEGKRCVIVDDVI 151 (203)
T ss_pred HHHHHHHHHHhccceeEEEEEEeecCccHHHHHHHHhCCceEEEecccccccccCCcCceeecccccccCceEEEEeccc
Confidence 45677744333346778999999999999999986 6677655 45554322 2234456789999999999999
Q ss_pred cchHHHHHHHHHHHhCCCcEEEEEEe
Q 023987 241 QSGGTLIECQVLSYLLPAVLLKMCVS 266 (274)
Q Consensus 241 ~TG~Tl~~aa~~Lk~~GA~~V~~~~t 266 (274)
|||.|+.++++.|++.|++.+.+.+.
T Consensus 152 ttG~Ti~E~Ie~lke~g~kpv~v~VL 177 (203)
T COG0856 152 TTGSTIKETIEQLKEEGGKPVLVVVL 177 (203)
T ss_pred ccChhHHHHHHHHHHcCCCcEEEEEE
Confidence 99999999999999999998776553
No 48
>PRK13810 orotate phosphoribosyltransferase; Provisional
Probab=99.17 E-value=2.2e-10 Score=98.05 Aligned_cols=83 Identities=14% Similarity=0.077 Sum_probs=66.4
Q ss_pred CCCeEEEecCCChHHHHHHhhc--CCCeEEEEEEEeCCceEEEeeeCC-CCCCeEEEEeccccchHHHHHHHHHHHhCCC
Q 023987 182 ANNIVIAFPDDGAWKRFHKMLD--HFPTVVCAKVREGDKRIVRIKEGN-PAGCHVVIVDDLVQSGGTLIECQVLSYLLPA 258 (274)
Q Consensus 182 ~~~~viV~pd~G~~~ra~~~a~--~~~~~~~~k~R~~~~~i~~~~~~~-v~gk~vlIVDDIi~TG~Tl~~aa~~Lk~~GA 258 (274)
.+.+.|+++..||++.|..++. +.|+.+++|..+..+.- ....+. .+|++|+||||++|||+|+.++++.++++||
T Consensus 72 ~~~d~I~g~~~~GiplA~~vA~~l~~p~v~vRK~~k~~g~~-~~~~g~~~~g~rVlIVDDVitTGgS~~~~i~~l~~~Ga 150 (187)
T PRK13810 72 MDVDTVAGVELGGVPLATAVSLETGLPLLIVRKSVKDYGTG-SRFVGDLKPEDRIVMLEDVTTSGGSVREAIEVVREAGA 150 (187)
T ss_pred CCCCEEEEEccchHHHHHHHHHHhCCCEEEEecCCCccCCC-ceEEccCCCcCEEEEEEeccCCChHHHHHHHHHHHCCC
Confidence 3557899999999999998875 78888888875443321 112444 4799999999999999999999999999999
Q ss_pred cEEEEEE
Q 023987 259 VLLKMCV 265 (274)
Q Consensus 259 ~~V~~~~ 265 (274)
.-+.+++
T Consensus 151 ~V~~v~v 157 (187)
T PRK13810 151 YIKYVIT 157 (187)
T ss_pred EEEEEEE
Confidence 8776655
No 49
>PRK05793 amidophosphoribosyltransferase; Provisional
Probab=99.16 E-value=1.7e-10 Score=111.60 Aligned_cols=101 Identities=21% Similarity=0.120 Sum_probs=70.8
Q ss_pred HHHHHHhcCCCCC-CeEEEecCCChHHHHHHhhc--CCCeEE-EEEEEeC--------------CceEE-EeeeCCCCCC
Q 023987 171 LLKQRLHQLPDAN-NIVIAFPDDGAWKRFHKMLD--HFPTVV-CAKVREG--------------DKRIV-RIKEGNPAGC 231 (274)
Q Consensus 171 ~la~~l~~~~~~~-~~viV~pd~G~~~ra~~~a~--~~~~~~-~~k~R~~--------------~~~i~-~~~~~~v~gk 231 (274)
.+++.|.+....+ +.++..|+. |...|..+++ +.|+.. +.+.|.. ..... .....+++||
T Consensus 276 ~~G~~La~~~~~~~D~Vv~vPds-g~~~A~~~A~~lgip~~~~l~r~~~~~rtfi~~~q~~R~~~~~~k~~~~~~~v~gk 354 (469)
T PRK05793 276 RAGRQLYKEYPVDADIVIGVPDS-GIPAAIGYAEASGIPYGIGFIKNKYVGRTFIAPSQELRERAVRVKLNPLKVNVEGK 354 (469)
T ss_pred HHHHHHHHhcCCCCCEEEEcCcc-HHHHHHHHHHHhCCCEeeeEEEeeeccccccChhHhhhhhhheEecccCccccCCC
Confidence 4555555543223 345556665 6888988886 667643 2333321 11111 1224578999
Q ss_pred eEEEEeccccchHHHHHHHHHHHhCCCcEEEEEEeceecee
Q 023987 232 HVVIVDDLVQSGGTLIECQVLSYLLPAVLLKMCVSEFEWVL 272 (274)
Q Consensus 232 ~vlIVDDIi~TG~Tl~~aa~~Lk~~GA~~V~~~~tH~~~~~ 272 (274)
+|+||||+|+||+|+.++++.|+++||++|++++||+.+..
T Consensus 355 ~VlLVDD~ItTGtTl~~~~~~Lr~aGAk~V~~~~~~p~~~~ 395 (469)
T PRK05793 355 RVVLIDDSIVRGTTSKRLVELLRKAGAKEVHFRVSSPPVKY 395 (469)
T ss_pred EEEEEccccCchHHHHHHHHHHHHcCCCEEEEEEECCCcCc
Confidence 99999999999999999999999999999999999997653
No 50
>COG0461 PyrE Orotate phosphoribosyltransferase [Nucleotide transport and metabolism]
Probab=99.15 E-value=5.4e-10 Score=96.06 Aligned_cols=83 Identities=22% Similarity=0.209 Sum_probs=65.6
Q ss_pred CCeEEEecCCChHHHHHHhhcCC---C-eEEEEEEEeCCceEEEeeeCCCCCCeEEEEeccccchHHHHHHHHHHHhCCC
Q 023987 183 NNIVIAFPDDGAWKRFHKMLDHF---P-TVVCAKVREGDKRIVRIKEGNPAGCHVVIVDDLVQSGGTLIECQVLSYLLPA 258 (274)
Q Consensus 183 ~~~viV~pd~G~~~ra~~~a~~~---~-~~~~~k~R~~~~~i~~~~~~~v~gk~vlIVDDIi~TG~Tl~~aa~~Lk~~GA 258 (274)
+.++|++|..||++.|..++..+ + +.+.+|+.+..+.......+..+|++|+|||||+|||+++.++++.|+++|+
T Consensus 61 ~~d~v~G~a~ggiP~A~~~a~~l~~~~~~~~~Rke~K~hG~~~~ieG~~~~G~kVvvVEDViTTG~Si~eai~~l~~~G~ 140 (201)
T COG0461 61 EFDVVAGPALGGIPLAAATALALAHLPPMAYVRKEAKDHGTGGLIEGGEVKGEKVVVVEDVITTGGSILEAVEALREAGA 140 (201)
T ss_pred CCcEEEeccccchHHHHHHHHHhccCCcEEEEeceeccCCCcceeEecCCCCCEEEEEEecccCCHhHHHHHHHHHHcCC
Confidence 56799999999999999998654 3 6667777655443212223345899999999999999999999999999999
Q ss_pred cEEEEEE
Q 023987 259 VLLKMCV 265 (274)
Q Consensus 259 ~~V~~~~ 265 (274)
.-+.++|
T Consensus 141 ~V~gv~~ 147 (201)
T COG0461 141 EVVGVAV 147 (201)
T ss_pred eEEEEEE
Confidence 9776655
No 51
>TIGR01744 XPRTase xanthine phosphoribosyltransferase. This model represent a xanthine-specific phosphoribosyltransferase of Bacillus subtilis and closely related proteins from other species, mostly from other Gram-positive bacteria. The adjacent gene is a xanthine transporter; B. subtilis can import xanthine for the purine salvage pathway or for catabolism to obtain nitrogen.
Probab=99.15 E-value=4e-10 Score=96.73 Aligned_cols=97 Identities=12% Similarity=0.025 Sum_probs=72.0
Q ss_pred HHHHHHHHhcCC-CCCCeEEEecCCChHHHHHHhhc--CCCeEEEEEEEeCCc-----eE-----------EEeeeC-CC
Q 023987 169 IPLLKQRLHQLP-DANNIVIAFPDDGAWKRFHKMLD--HFPTVVCAKVREGDK-----RI-----------VRIKEG-NP 228 (274)
Q Consensus 169 ~~~la~~l~~~~-~~~~~viV~pd~G~~~ra~~~a~--~~~~~~~~k~R~~~~-----~i-----------~~~~~~-~v 228 (274)
...+++.+.+.+ +.+.++|++|+.+|+..|..+|. +.++.+++|..+... .. .....+ .+
T Consensus 35 l~~v~~~l~~~~~~~~~d~Vv~~ea~Gi~la~~lA~~Lg~p~v~vRK~~k~~~~~~~~~~~~~s~~~~~~~~l~i~~~~l 114 (191)
T TIGR01744 35 MQEVGEEFARRFADDGITKIVTIEASGIAPAIMTGLKLGVPVVFARKKKPLTLTDNLLTASVHSFTKQTTSTVAVSGEFL 114 (191)
T ss_pred HHHHHHHHHHHhccCCCCEEEEEccccHHHHHHHHHHHCCCEEEEEeCCCCCCCCcceEEEEEEeecCccEEEEEEHHhC
Confidence 344455554443 23557899999999999998875 788999988754321 10 011223 23
Q ss_pred -CCCeEEEEeccccchHHHHHHHHHHHhCCCcEEEEEE
Q 023987 229 -AGCHVVIVDDLVQSGGTLIECQVLSYLLPAVLLKMCV 265 (274)
Q Consensus 229 -~gk~vlIVDDIi~TG~Tl~~aa~~Lk~~GA~~V~~~~ 265 (274)
+|++|+||||+++||+|+.++++.++++||.-+.++|
T Consensus 115 ~~G~rVLIVDDvvtTGgT~~a~~~ll~~aGa~Vvgv~~ 152 (191)
T TIGR01744 115 SDQDRVLIIDDFLANGQAAHGLVDIAKQAGAKIAGIGI 152 (191)
T ss_pred CCcCEEEEEEehhccChHHHHHHHHHHHCCCEEEEEEE
Confidence 7999999999999999999999999999998877766
No 52
>TIGR01091 upp uracil phosphoribosyltransferase. that includes uracil phosphoribosyltransferase, uridine kinases, and other, uncharacterized proteins.
Probab=99.11 E-value=6.4e-10 Score=96.67 Aligned_cols=84 Identities=15% Similarity=0.126 Sum_probs=68.5
Q ss_pred CCeEEEecCCChHHHHHHhhcC---CCeEEEEEEEeCCc-e-E--EEeeeCCCCCCeEEEEeccccchHHHHHHHHHHHh
Q 023987 183 NNIVIAFPDDGAWKRFHKMLDH---FPTVVCAKVREGDK-R-I--VRIKEGNPAGCHVVIVDDLVQSGGTLIECQVLSYL 255 (274)
Q Consensus 183 ~~~viV~pd~G~~~ra~~~a~~---~~~~~~~k~R~~~~-~-i--~~~~~~~v~gk~vlIVDDIi~TG~Tl~~aa~~Lk~ 255 (274)
++.++|+...||..++..+.+- .++..+.++|+... . . ...+..+++||+|||||||++||+|+..+++.|++
T Consensus 68 ~~i~~V~ILrgg~~~~~~l~~~l~~~~v~~i~~~r~~~t~~~~~~~~~lp~~i~~~~VllvDd~laTG~Tl~~ai~~L~~ 147 (207)
T TIGR01091 68 KKIVLVPILRAGLGMVDGVLKLIPEAKVGHVGAYRNEETLKPVPYYSKLPEDIDERTVIVLDPMLATGGTMIAALDLLKK 147 (207)
T ss_pred CcEEEEEEeCCcHHHHHHHHHhCCcCceeEEEEEeCCCCCCCEEEEecCCCCCCCCEEEEECCCccchHHHHHHHHHHHH
Confidence 4689999999999999998763 44566667775432 1 1 22446689999999999999999999999999999
Q ss_pred CCCcEEEEEEe
Q 023987 256 LPAVLLKMCVS 266 (274)
Q Consensus 256 ~GA~~V~~~~t 266 (274)
.||++|.+++.
T Consensus 148 ~G~~~I~v~~l 158 (207)
T TIGR01091 148 RGAKKIKVLSI 158 (207)
T ss_pred cCCCEEEEEEE
Confidence 99999999876
No 53
>PRK08558 adenine phosphoribosyltransferase; Provisional
Probab=99.08 E-value=1e-09 Score=97.37 Aligned_cols=98 Identities=17% Similarity=0.073 Sum_probs=71.3
Q ss_pred HHHHHHHHhcCC-CCCCeEEEecCCChHHHHHHhhc--CCCeEEEEEEEeCCc-------------eEE-Eee-eCC-CC
Q 023987 169 IPLLKQRLHQLP-DANNIVIAFPDDGAWKRFHKMLD--HFPTVVCAKVREGDK-------------RIV-RIK-EGN-PA 229 (274)
Q Consensus 169 ~~~la~~l~~~~-~~~~~viV~pd~G~~~ra~~~a~--~~~~~~~~k~R~~~~-------------~i~-~~~-~~~-v~ 229 (274)
...+++.+.+.+ +.+.++|+++..||+..|..+|. +.|+.+++|.+..+. .+. ..+ ... .+
T Consensus 96 ~~~v~~~la~~~~~~~~D~Vvtv~~~GI~lA~~lA~~L~~p~vi~Rk~~~~~~~~~v~~y~s~s~~~~~~~~l~~~~l~~ 175 (238)
T PRK08558 96 LRLIAPVVAERFMGLRVDVVLTAATDGIPLAVAIASYFGADLVYAKKSKETGVEKFYEEYQRLASGIEVTLYLPASALKK 175 (238)
T ss_pred HHHHHHHHHHHccCCCCCEEEEECcccHHHHHHHHHHHCcCEEEEEecCCCCCcceEEEeeccCCCceeEEEecHHHcCC
Confidence 344455554443 23457999999999999999986 778888877553221 111 111 123 58
Q ss_pred CCeEEEEeccccchHHHHHHHHHHHhCCCcEEEEEEe
Q 023987 230 GCHVVIVDDLVQSGGTLIECQVLSYLLPAVLLKMCVS 266 (274)
Q Consensus 230 gk~vlIVDDIi~TG~Tl~~aa~~Lk~~GA~~V~~~~t 266 (274)
|++||||||+++||+|+..+++.++++||+.+.++|.
T Consensus 176 G~rVLIVDDvi~TG~Tl~~~~~ll~~~ga~vvgv~vl 212 (238)
T PRK08558 176 GDRVLIVDDIIRSGETQRALLDLARQAGADVVGVFFL 212 (238)
T ss_pred cCEEEEEecccccCHHHHHHHHHHHHcCCEEEEEEEE
Confidence 9999999999999999999999999999998777653
No 54
>PLN02440 amidophosphoribosyltransferase
Probab=99.06 E-value=8e-10 Score=107.23 Aligned_cols=99 Identities=14% Similarity=-0.029 Sum_probs=69.1
Q ss_pred HHHHHHHHhcCCCCCCeEEEecCCChHHHHHHhhc--CCCeEE-EEEEEeCC------------ceEE--Ee-eeCCCCC
Q 023987 169 IPLLKQRLHQLPDANNIVIAFPDDGAWKRFHKMLD--HFPTVV-CAKVREGD------------KRIV--RI-KEGNPAG 230 (274)
Q Consensus 169 ~~~la~~l~~~~~~~~~viV~pd~G~~~ra~~~a~--~~~~~~-~~k~R~~~------------~~i~--~~-~~~~v~g 230 (274)
-..+++.|.+....+.+++|+.-.++...|..+++ +.|+.. +-|.|..+ ..+. .. ....++|
T Consensus 261 r~~~g~~La~~~~~~~d~vvpVP~s~~~~A~~la~~lgiP~~~~lvr~ry~~rt~i~~~q~~r~~~~~~k~~~~~~~v~g 340 (479)
T PLN02440 261 RLEFGEILATEIPVDCDVVIPVPDSGRVAALGYAAKLGVPFQQGLIRSHYVGRTFIEPSQKIRDFSVKLKLNPVRSVLEG 340 (479)
T ss_pred HHHHHHHHHHhcCCCCCEEEEeCCcHHHHHHHHHHHhCCCchhheEEEeeccccccCcchhhhhhhheeeeecccccccC
Confidence 34566666654333455777777778889998886 555431 22344321 1111 11 1256899
Q ss_pred CeEEEEeccccchHHHHHHHHHHHhCCCcEEEEEEec
Q 023987 231 CHVVIVDDLVQSGGTLIECQVLSYLLPAVLLKMCVSE 267 (274)
Q Consensus 231 k~vlIVDDIi~TG~Tl~~aa~~Lk~~GA~~V~~~~tH 267 (274)
|+|+||||++|||.|+.++++.|+++||++|++++.=
T Consensus 341 k~VlLVDDiittGtTl~~i~~~L~~aGa~~V~v~v~~ 377 (479)
T PLN02440 341 KRVVVVDDSIVRGTTSSKIVRMLREAGAKEVHMRIAS 377 (479)
T ss_pred ceEEEEeceeCcHHHHHHHHHHHHhcCCCEEEEEEEC
Confidence 9999999999999999999999999999999998863
No 55
>PRK09177 xanthine-guanine phosphoribosyltransferase; Validated
Probab=98.99 E-value=4e-09 Score=87.78 Aligned_cols=86 Identities=17% Similarity=0.103 Sum_probs=61.1
Q ss_pred hHHHHHHHHhcCCCCCCeEEEecCCChHHHHHHhhc--CCCe-EEEEEEEeC---CceEEEeeeCCCCCCeEEEEecccc
Q 023987 168 GIPLLKQRLHQLPDANNIVIAFPDDGAWKRFHKMLD--HFPT-VVCAKVREG---DKRIVRIKEGNPAGCHVVIVDDLVQ 241 (274)
Q Consensus 168 ~~~~la~~l~~~~~~~~~viV~pd~G~~~ra~~~a~--~~~~-~~~~k~R~~---~~~i~~~~~~~v~gk~vlIVDDIi~ 241 (274)
....+|+.|.+. .+++++|++..||+.++..+++ +.+. .+++-.++. .+..........+||+|||||||+|
T Consensus 18 ~i~~la~~I~~~--~~~d~vvgv~~GG~~fa~~L~~~L~~~~v~~i~~ssY~~~~~~~~~~~~~~~~~gk~VLIVDDIiD 95 (156)
T PRK09177 18 DARALAWRLLPA--GQWKGIIAVTRGGLVPAAILARELGIRLVDTVCISSYDHDNQGELKVLKRAEGDGEGFLVVDDLVD 95 (156)
T ss_pred HHHHHHHHHHhh--CCCCEEEEEecCCeehHHHHHHHcCCCceeEEEEEEECCCcCCcEEEecCCCcCcCEEEEEeeeeC
Confidence 466788888664 2568999999999999999986 4443 223322221 1222111122579999999999999
Q ss_pred chHHHHHHHHHHHh
Q 023987 242 SGGTLIECQVLSYL 255 (274)
Q Consensus 242 TG~Tl~~aa~~Lk~ 255 (274)
||+|+.++.+.+++
T Consensus 96 TG~Tl~~v~~~l~~ 109 (156)
T PRK09177 96 TGGTARAVREMYPK 109 (156)
T ss_pred CHHHHHHHHHHHhh
Confidence 99999999999974
No 56
>COG2236 Predicted phosphoribosyltransferases [General function prediction only]
Probab=98.98 E-value=1.8e-09 Score=92.31 Aligned_cols=98 Identities=18% Similarity=0.116 Sum_probs=72.3
Q ss_pred hHHHHHHHHhcCCCCCCeEEEecCCChHHHHHHhhc--CC-CeEEEEEEEeCC------c-eEEEeeeCC-CCCCeEEEE
Q 023987 168 GIPLLKQRLHQLPDANNIVIAFPDDGAWKRFHKMLD--HF-PTVVCAKVREGD------K-RIVRIKEGN-PAGCHVVIV 236 (274)
Q Consensus 168 ~~~~la~~l~~~~~~~~~viV~pd~G~~~ra~~~a~--~~-~~~~~~k~R~~~------~-~i~~~~~~~-v~gk~vlIV 236 (274)
.+..+|+.|.+. ++++++++++..||+..|+.+++ +. ++..+.-+.... . .+.....-+ ++||+||||
T Consensus 15 ~~~~lA~kI~~s-~~~PDvIiaiaRGG~~pariLsd~L~~~~l~~i~v~~y~~~~~~~~~~~v~~~~~~d~l~GkkVLIV 93 (192)
T COG2236 15 LCRALAEKIRAS-GFKPDVIVAIARGGLIPARILSDFLGVKPLYSIKVEHYDETAERDGEAKVKYPITIDPLSGKKVLIV 93 (192)
T ss_pred HHHHHHHHHHHc-CCCCCEEEEEcCCceehHHHHHHHhCCCceEEEEEEEehhhcccCCcceeecCccccccCCCeEEEE
Confidence 467899999765 58899999999999999999886 33 444443222221 1 122223345 899999999
Q ss_pred eccccchHHHHHHHHHHHhCCCcEEEEEEe
Q 023987 237 DDLVQSGGTLIECQVLSYLLPAVLLKMCVS 266 (274)
Q Consensus 237 DDIi~TG~Tl~~aa~~Lk~~GA~~V~~~~t 266 (274)
|||.|||.||..|.+.|++..+..+..++.
T Consensus 94 DDI~DTG~Tl~~a~~~l~~~~p~e~rta~l 123 (192)
T COG2236 94 DDIVDTGETLELALEELKKLAPAEVRTAVL 123 (192)
T ss_pred ecccCchHhHHHHHHHHHhhCchhhhhhhh
Confidence 999999999999999999976666654443
No 57
>PRK06031 phosphoribosyltransferase; Provisional
Probab=98.98 E-value=4.2e-09 Score=93.04 Aligned_cols=95 Identities=15% Similarity=0.019 Sum_probs=64.1
Q ss_pred HHHHHHhcCC-CCCCeEEEecCCChHHHHHHhhc--CCC-eEEEEEEEeC---C------------ceE-EEee----eC
Q 023987 171 LLKQRLHQLP-DANNIVIAFPDDGAWKRFHKMLD--HFP-TVVCAKVREG---D------------KRI-VRIK----EG 226 (274)
Q Consensus 171 ~la~~l~~~~-~~~~~viV~pd~G~~~ra~~~a~--~~~-~~~~~k~R~~---~------------~~i-~~~~----~~ 226 (274)
.+++.|.+.+ ..+.++|+++..+|+..|..++. +.+ +..+.+.|+. . +.. ...+ ..
T Consensus 71 ~la~~La~~~~~~~~DvIVgv~~~Gi~lA~~lA~~Lg~~~~vpl~~~rK~~~~~~l~~~~~sitt~~~~~~~~l~~~~~~ 150 (233)
T PRK06031 71 ALAEHLAEKARAFDPDVVAGLPTLGLTLAAAVARKLGHTRYVPLGTSRKFWYRDELSVPLSSITTPDQGKRLYIDPRMLP 150 (233)
T ss_pred HHHHHHHHHcccCCCcEEEEeccCCHHHHHHHHHHHCCCCceEEEEccccccccccccceeeeeccCccceEEecccccc
Confidence 4555554443 23567999999999999999986 322 2223332321 0 000 0011 12
Q ss_pred CCCCCeEEEEeccccchHHHHHHHHHHHhCCCcEEEEEE
Q 023987 227 NPAGCHVVIVDDLVQSGGTLIECQVLSYLLPAVLLKMCV 265 (274)
Q Consensus 227 ~v~gk~vlIVDDIi~TG~Tl~~aa~~Lk~~GA~~V~~~~ 265 (274)
.++|++|+||||+++||+|+.++++.|+++||+.+.+++
T Consensus 151 ~~~GkrVLIVDDVitTG~Tl~aa~~lL~~~Ga~Vvgv~v 189 (233)
T PRK06031 151 LLEGRRVALIDDVISSGASIVAGLRLLAACGIEPAGIGA 189 (233)
T ss_pred cCCCCEEEEEEeEccccHHHHHHHHHHHHcCCeEEEEEE
Confidence 368999999999999999999999999999998766544
No 58
>PRK05500 bifunctional orotidine 5'-phosphate decarboxylase/orotate phosphoribosyltransferase protein; Validated
Probab=98.97 E-value=3.3e-09 Score=102.38 Aligned_cols=83 Identities=23% Similarity=0.172 Sum_probs=67.8
Q ss_pred CCeEEEecCCChHHHHHHhhc--CCCeEEEEEEEeCCceEEEeeeCCC-CCCeEEEEeccccchHHHHHHHHHHHhCCCc
Q 023987 183 NNIVIAFPDDGAWKRFHKMLD--HFPTVVCAKVREGDKRIVRIKEGNP-AGCHVVIVDDLVQSGGTLIECQVLSYLLPAV 259 (274)
Q Consensus 183 ~~~viV~pd~G~~~ra~~~a~--~~~~~~~~k~R~~~~~i~~~~~~~v-~gk~vlIVDDIi~TG~Tl~~aa~~Lk~~GA~ 259 (274)
+.+.|++|..||++.|..++. +.|+.+.+|+.+..++. ....|.+ +|++|+|||||+|||+|+.++++.|+++|+.
T Consensus 344 ~~D~I~Gia~gGiPlAt~lA~~lg~p~v~vRKe~K~~G~~-~~ieG~~~~G~rVlIVDDViTTGgSi~eaie~l~~aG~~ 422 (477)
T PRK05500 344 TFDRIAGIPYGSLPTATGLALHLHHPMIFPRKEVKAHGTR-RLIEGNFHPGETVVVVDDILITGKSVMEGAEKLKSAGLN 422 (477)
T ss_pred CCCEEEEEccchHHHHHHHHHHhCCCEEEEecCcCccCCC-ceEecCCCCcCEEEEEEeccccCHHHHHHHHHHHHCCCE
Confidence 456999999999999999885 78888888886554422 1235554 7999999999999999999999999999998
Q ss_pred EEEEEEe
Q 023987 260 LLKMCVS 266 (274)
Q Consensus 260 ~V~~~~t 266 (274)
.+.++|.
T Consensus 423 V~~v~vl 429 (477)
T PRK05500 423 VRDIVVF 429 (477)
T ss_pred EEEEEEE
Confidence 7766553
No 59
>PRK09123 amidophosphoribosyltransferase; Provisional
Probab=98.96 E-value=8e-09 Score=100.15 Aligned_cols=101 Identities=13% Similarity=0.019 Sum_probs=73.5
Q ss_pred HHHHHHHHhcCCCCCCeEEEecCCChHHHHHHhhc--CCCeE--EEEEEEeCC------------ceEEEe--e-eCCCC
Q 023987 169 IPLLKQRLHQLPDANNIVIAFPDDGAWKRFHKMLD--HFPTV--VCAKVREGD------------KRIVRI--K-EGNPA 229 (274)
Q Consensus 169 ~~~la~~l~~~~~~~~~viV~pd~G~~~ra~~~a~--~~~~~--~~~k~R~~~------------~~i~~~--~-~~~v~ 229 (274)
...+++.|.+....+.+++|+.-.+|...|..+++ +.++. ++ |.|+.+ ..+... . ...++
T Consensus 281 R~~~g~~La~~~~~~~D~Vv~VP~sg~~~A~~la~~lgip~~~~li-r~~y~grt~i~~~q~~r~~~v~~k~~~~~~~~~ 359 (479)
T PRK09123 281 RKNIGRELARESPVDADVVVPVPDSGVPAAIGYAQESGIPFELGII-RNHYVGRTFIQPTQQIRNLGVKLKHNANRAVIE 359 (479)
T ss_pred HHHHHHHHHHhCCCCCeEEEEcCccHHHHHHHHHHhcCCCeeheEE-EEeecCccccccccccccccEEEEecccccccC
Confidence 34566666655434567888888899999999986 56654 33 334321 111111 1 22489
Q ss_pred CCeEEEEeccccchHHHHHHHHHHHhCCCcEEEEEE-----eceec
Q 023987 230 GCHVVIVDDLVQSGGTLIECQVLSYLLPAVLLKMCV-----SEFEW 270 (274)
Q Consensus 230 gk~vlIVDDIi~TG~Tl~~aa~~Lk~~GA~~V~~~~-----tH~~~ 270 (274)
||+|+||||+++||.|+.++++.|+++||++|++++ +|+-+
T Consensus 360 gk~vvlvDD~i~tG~Tl~~~~~~l~~~Ga~~v~~~~~~p~~~~~~~ 405 (479)
T PRK09123 360 GKRVVLVDDSIVRGTTSRKIVQMLRDAGAKEVHLRIASPPITHPCF 405 (479)
T ss_pred CCEEEEEeceeCchHHHHHHHHHHHHcCCCEEEEEEcCCCCcccee
Confidence 999999999999999999999999999999999999 77654
No 60
>TIGR01743 purR_Bsub pur operon repressor, Bacillus subtilis type. This model represents the puring operon repressor PurR of low-GC Gram-positive bacteria. This homodimeric repressor contains a large region homologous to phosphoribosyltransferases and is inhibited by 5-phosphoribosyl 1-pyrophosphate.
Probab=98.95 E-value=6.6e-09 Score=93.33 Aligned_cols=84 Identities=19% Similarity=0.180 Sum_probs=66.2
Q ss_pred CCCeEEEecCCChHHHHHHhhc--CCCeEEEEEEEeC-Cc-------------eEEE-ee-eCCC-CCCeEEEEeccccc
Q 023987 182 ANNIVIAFPDDGAWKRFHKMLD--HFPTVVCAKVREG-DK-------------RIVR-IK-EGNP-AGCHVVIVDDLVQS 242 (274)
Q Consensus 182 ~~~~viV~pd~G~~~ra~~~a~--~~~~~~~~k~R~~-~~-------------~i~~-~~-~~~v-~gk~vlIVDDIi~T 242 (274)
.+.++|+++..+|++.|..+|. +.|+.+++|..+. ++ .+.. .+ ...+ +|++|+||||+++|
T Consensus 127 ~~iD~VvgvetkGIpLA~avA~~L~vp~vivRK~~K~t~g~~vs~nY~sgs~~~ie~m~l~k~~l~~G~rVLIVDDv~~T 206 (268)
T TIGR01743 127 REIDAVMTVATKGIPLAYAVASVLNVPLVIVRKDSKVTEGSTVSINYVSGSSNRIQTMSLAKRSLKTGSKVLIIDDFMKA 206 (268)
T ss_pred CCCCEEEEEccchHHHHHHHHHHHCCCEEEEEECCCCCCCCcEEEEEEcccCccceEEEEehhhCCCcCEEEEEeeeccc
Confidence 3567999999999999999986 7899999887653 11 1111 11 1233 79999999999999
Q ss_pred hHHHHHHHHHHHhCCCcEEEEEE
Q 023987 243 GGTLIECQVLSYLLPAVLLKMCV 265 (274)
Q Consensus 243 G~Tl~~aa~~Lk~~GA~~V~~~~ 265 (274)
|+|+.++.+.+++.||.-+.+++
T Consensus 207 GgTi~a~i~Ll~e~Ga~VvGv~v 229 (268)
T TIGR01743 207 GGTINGMINLLDEFDAEVAGIGV 229 (268)
T ss_pred CHHHHHHHHHHHHCCCEEEEEEE
Confidence 99999999999999998777665
No 61
>COG0503 Apt Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins [Nucleotide transport and metabolism]
Probab=98.94 E-value=7.4e-09 Score=88.04 Aligned_cols=95 Identities=20% Similarity=0.164 Sum_probs=72.2
Q ss_pred HHHHHHHHhcCCCCCCeEEEecCCChHHHHHHhhc--CCCeEEEEEEEeCCce-E------------EEeeeCCC-CCCe
Q 023987 169 IPLLKQRLHQLPDANNIVIAFPDDGAWKRFHKMLD--HFPTVVCAKVREGDKR-I------------VRIKEGNP-AGCH 232 (274)
Q Consensus 169 ~~~la~~l~~~~~~~~~viV~pd~G~~~ra~~~a~--~~~~~~~~k~R~~~~~-i------------~~~~~~~v-~gk~ 232 (274)
...+++.+.. .+.+.|+++..+|+..|..+|. +.|+..++|.++.... . .......+ +|++
T Consensus 42 i~~~~~~~~~---~~id~Iv~iea~Gi~~a~~vA~~Lgvp~v~vRK~~kl~~~~~~~~~~~~~~~~~l~~~~~~l~~G~r 118 (179)
T COG0503 42 IDELAERYKD---DGIDKIVTIEARGIPLAAAVALELGVPFVPVRKKGKLPEESVVETYYLEYGSETLELHKDALKPGDR 118 (179)
T ss_pred HHHHHHHhcc---cCCCEEEEEccccchhHHHHHHHhCCCEEEEEecCCCCCcceeEEEEEeccceEEEEEhhhCCCCCE
Confidence 3455655554 3467999999999999999986 7888888887654321 0 01112222 6999
Q ss_pred EEEEeccccchHHHHHHHHHHHhCCCcEEEEEEe
Q 023987 233 VVIVDDLVQSGGTLIECQVLSYLLPAVLLKMCVS 266 (274)
Q Consensus 233 vlIVDDIi~TG~Tl~~aa~~Lk~~GA~~V~~~~t 266 (274)
|+||||+++||+|+....+++.++|+.-+.+++.
T Consensus 119 VlIVDDllaTGgT~~a~~~Ll~~~ga~vvg~~~~ 152 (179)
T COG0503 119 VLIVDDLLATGGTALALIELLEQAGAEVVGAAFV 152 (179)
T ss_pred EEEEecchhcChHHHHHHHHHHHCCCEEEEEEEE
Confidence 9999999999999999999999999998877654
No 62
>PRK08341 amidophosphoribosyltransferase; Provisional
Probab=98.94 E-value=4.2e-09 Score=101.10 Aligned_cols=97 Identities=21% Similarity=0.176 Sum_probs=68.2
Q ss_pred HHHHHHHhcCCCCC-CeEEEecCCChHHHHHHhhc--CCCeEE-EEEEEeC------Cc----eEE---EeeeCCCCCCe
Q 023987 170 PLLKQRLHQLPDAN-NIVIAFPDDGAWKRFHKMLD--HFPTVV-CAKVREG------DK----RIV---RIKEGNPAGCH 232 (274)
Q Consensus 170 ~~la~~l~~~~~~~-~~viV~pd~G~~~ra~~~a~--~~~~~~-~~k~R~~------~~----~i~---~~~~~~v~gk~ 232 (274)
..+++.|.+....+ +.++..||.|. ..|..+++ +.|+.. +.|.|.. +. .+. ....+.++||+
T Consensus 258 ~~~G~~La~~~~~~~D~Vv~VPdsg~-~~A~~~a~~lgip~~~~l~k~r~~~rtfi~~~qr~~~~~~k~~~~~~~v~gk~ 336 (442)
T PRK08341 258 YRMGVELARESPAEGDVVIAVPDSGR-TAALGFAHESGIPYMEGLIKNRYIGRTFIMPSGRELKVKLKLSPVREVINGKR 336 (442)
T ss_pred HHHHHHhhcccCCCCceEEEecCchH-HHHHHHHHHhCCCchheEEEeccccccccCcCchhhhheeeecccccccCCCE
Confidence 35677776654333 45566677665 68888875 566643 5565532 11 111 12345789999
Q ss_pred EEEEeccccchHHHHHHHHHHHhCCCcEEEEEEec
Q 023987 233 VVIVDDLVQSGGTLIECQVLSYLLPAVLLKMCVSE 267 (274)
Q Consensus 233 vlIVDDIi~TG~Tl~~aa~~Lk~~GA~~V~~~~tH 267 (274)
|+||||++|||+|+.++++.|+++||++|++.++-
T Consensus 337 VlLVDD~IttGtTl~~~~~~L~~aGAk~V~~~~~s 371 (442)
T PRK08341 337 VVLVDDSIVRGTTMKRIVKMLRDAGAREVHVRIAS 371 (442)
T ss_pred EEEEeeeeccHHHHHHHHHHHHhcCCcEEEEEEcC
Confidence 99999999999999999999999999999987653
No 63
>PRK07349 amidophosphoribosyltransferase; Provisional
Probab=98.91 E-value=9.6e-09 Score=99.88 Aligned_cols=98 Identities=19% Similarity=0.077 Sum_probs=71.1
Q ss_pred HHHHHHHHhcCCCCCCeEEEecCCChHHHHHHhhc--CCCeEE-EEEEEeCC------c--------eEE-EeeeCCCCC
Q 023987 169 IPLLKQRLHQLPDANNIVIAFPDDGAWKRFHKMLD--HFPTVV-CAKVREGD------K--------RIV-RIKEGNPAG 230 (274)
Q Consensus 169 ~~~la~~l~~~~~~~~~viV~pd~G~~~ra~~~a~--~~~~~~-~~k~R~~~------~--------~i~-~~~~~~v~g 230 (274)
-..++++|.+....+.++||++-..|+..|..+++ +.|+.. +.|.|..+ . +.. ......++|
T Consensus 298 R~~~G~~La~~~~~~~DvVv~VP~sg~~~A~g~A~~lgip~~~~L~r~~y~grtfi~p~q~~R~~~~~~kl~~~~~~~~g 377 (500)
T PRK07349 298 RQRLGQQLAKESPVDADLVIGVPDSGIPAAIGFSQASGIPYAEGLIKNRYVGRTFIQPTQSMRESGIRMKLNPLKDVLAG 377 (500)
T ss_pred HHHHHHHHhhhcccCCcEEEEeccccHHHHHHHHHHHCCCchhceEEEeccCccccCCCHHHHHhhhheeeeccccccCC
Confidence 34577888765444567888887788888888886 666532 33444331 1 111 122446799
Q ss_pred CeEEEEeccccchHHHHHHHHHHHhCCCcEEEEEEe
Q 023987 231 CHVVIVDDLVQSGGTLIECQVLSYLLPAVLLKMCVS 266 (274)
Q Consensus 231 k~vlIVDDIi~TG~Tl~~aa~~Lk~~GA~~V~~~~t 266 (274)
|+|+||||++|||.|+.++++.|+++||++|++..+
T Consensus 378 krVlLVDDvIttGtTl~~~~~~Lr~aGAkeV~~~i~ 413 (500)
T PRK07349 378 KRIIIVDDSIVRGTTSRKIVKALRDAGATEVHMRIS 413 (500)
T ss_pred CEEEEEeceeCCcHHHHHHHHHHHHhCCeEEEEEeC
Confidence 999999999999999999999999999999988643
No 64
>PRK07272 amidophosphoribosyltransferase; Provisional
Probab=98.91 E-value=5.7e-09 Score=101.11 Aligned_cols=103 Identities=17% Similarity=0.083 Sum_probs=73.0
Q ss_pred HHHHHHHHhcCCCCCCeEEEecCCChHHHHHHhhc--CCCeEE-EEEEEeCC------c------eE---EEeeeCCCCC
Q 023987 169 IPLLKQRLHQLPDANNIVIAFPDDGAWKRFHKMLD--HFPTVV-CAKVREGD------K------RI---VRIKEGNPAG 230 (274)
Q Consensus 169 ~~~la~~l~~~~~~~~~viV~pd~G~~~ra~~~a~--~~~~~~-~~k~R~~~------~------~i---~~~~~~~v~g 230 (274)
-..++++|.+....+.++|++.-..+...|..+++ +.|+.. +-|.|... . .+ +......++|
T Consensus 271 R~~lg~~La~~~~~~~D~VvpVPnqa~~lA~~la~~lgip~~~~lvk~~~~~rt~~~~~q~~R~~~vr~~f~~~~~~~~g 350 (484)
T PRK07272 271 RKRMGKRLAQEFPHDADIVIGVPNSSLSAASGYAEESGLPYEMGLVKNQYVARTFIQPTQELREQGVRMKLSAVSGVVKG 350 (484)
T ss_pred HHHHHHHHHhhcCCCCCEEEEecHHHHHHHHHHHHHHCCCcccCeEEEccCCccccCCCHHHHHHHHhhCccccccccCC
Confidence 34677777665433446777766677788888876 566521 22333211 0 01 1123457899
Q ss_pred CeEEEEeccccchHHHHHHHHHHHhCCCcEEEEEEeceece
Q 023987 231 CHVVIVDDLVQSGGTLIECQVLSYLLPAVLLKMCVSEFEWV 271 (274)
Q Consensus 231 k~vlIVDDIi~TG~Tl~~aa~~Lk~~GA~~V~~~~tH~~~~ 271 (274)
|+|+||||++|||.|+.++++.|+++||++|.++++|+...
T Consensus 351 k~vllVDDvittG~T~~~~~~~L~~~Ga~~v~~~~~~p~~~ 391 (484)
T PRK07272 351 KRVVMVDDSIVRGTTSRRIVQLLKEAGAKEVHVAIASPELK 391 (484)
T ss_pred CEEEEEccccCchHHHHHHHHHHHhcCCcEEEEEEeCCccc
Confidence 99999999999999999999999999999999999998654
No 65
>PRK06781 amidophosphoribosyltransferase; Provisional
Probab=98.88 E-value=1.2e-08 Score=98.68 Aligned_cols=99 Identities=16% Similarity=0.091 Sum_probs=68.1
Q ss_pred HHHHHHHhcCCCCCCeEEEecCCChHHHHHHhhc--CCCeEE-EEEEEeCC------c------eE---EEeeeCCCCCC
Q 023987 170 PLLKQRLHQLPDANNIVIAFPDDGAWKRFHKMLD--HFPTVV-CAKVREGD------K------RI---VRIKEGNPAGC 231 (274)
Q Consensus 170 ~~la~~l~~~~~~~~~viV~pd~G~~~ra~~~a~--~~~~~~-~~k~R~~~------~------~i---~~~~~~~v~gk 231 (274)
..+.+.|.+....+.++|++.-..|...|..+++ +.|+.. +-|.|... . .+ +......++||
T Consensus 270 ~~~G~~La~~~~~~~D~vv~VP~s~~~~A~~~a~~~gip~~~~lik~~~~~rt~~~~~~~~R~~~v~~~f~~~~~~i~gk 349 (471)
T PRK06781 270 KNMGKRLAAEAPIEADVVTGVPDSSISAAIGYAEATGIPYELGLIKNRYVGRTFIQPSQELREQGVKMKLSAVRGVVEGK 349 (471)
T ss_pred HHHHHHHhhhCCCCCcEEEEcChhHHHHHHHHHHHhCCCcccceEEEccCCCCCcCCCHHHHHHHHhcceeccccccCCc
Confidence 3567777665434455666655567777877775 556532 22333321 0 01 11224568999
Q ss_pred eEEEEeccccchHHHHHHHHHHHhCCCcEEEEEEece
Q 023987 232 HVVIVDDLVQSGGTLIECQVLSYLLPAVLLKMCVSEF 268 (274)
Q Consensus 232 ~vlIVDDIi~TG~Tl~~aa~~Lk~~GA~~V~~~~tH~ 268 (274)
+|+||||++|||.|+.++++.|+++||++|+++.+=.
T Consensus 350 ~VlLVDDvittGtTl~~~~~~Lk~aGA~eV~v~i~sP 386 (471)
T PRK06781 350 RVVMIDDSIVRGTTSKRIVRMLREAGATEVHVRIASP 386 (471)
T ss_pred eEEEEeceeccchHHHHHHHHHHHcCCcEEEEEECCC
Confidence 9999999999999999999999999999999987643
No 66
>PRK09213 pur operon repressor; Provisional
Probab=98.88 E-value=1.5e-08 Score=91.30 Aligned_cols=84 Identities=18% Similarity=0.191 Sum_probs=65.7
Q ss_pred CCCeEEEecCCChHHHHHHhhc--CCCeEEEEEEEeC-Cce-------------EEE-ee-eCCC-CCCeEEEEeccccc
Q 023987 182 ANNIVIAFPDDGAWKRFHKMLD--HFPTVVCAKVREG-DKR-------------IVR-IK-EGNP-AGCHVVIVDDLVQS 242 (274)
Q Consensus 182 ~~~~viV~pd~G~~~ra~~~a~--~~~~~~~~k~R~~-~~~-------------i~~-~~-~~~v-~gk~vlIVDDIi~T 242 (274)
.+.++|+++..+|++.|..+|. +.|+.+++|..+. ++. +.. .+ ...+ +|.+|+||||+++|
T Consensus 129 ~~iD~Vvtvet~GIplA~~vA~~L~vp~vivRK~~K~~~G~~vs~~y~sgs~~~ie~m~L~~~~l~~G~rVLIVDDv~~T 208 (271)
T PRK09213 129 KKIDAVMTVETKGIPLAYAVANYLNVPFVIVRRDSKVTEGSTVSINYVSGSSKRIETMSLSKRSLKEGSRVLIVDDFMKA 208 (271)
T ss_pred cCCCEEEEEccccHHHHHHHHHHHCCCEEEEEECCCCCCCCcEEEEEEecccccceEEEEeHhhcCCcCEEEEEeeeccc
Confidence 3567999999999999999986 7899888886543 221 111 01 1234 79999999999999
Q ss_pred hHHHHHHHHHHHhCCCcEEEEEE
Q 023987 243 GGTLIECQVLSYLLPAVLLKMCV 265 (274)
Q Consensus 243 G~Tl~~aa~~Lk~~GA~~V~~~~ 265 (274)
|+|+.++++.++++||.-+.+++
T Consensus 209 GgTi~a~i~Ll~e~Ga~VvGv~v 231 (271)
T PRK09213 209 GGTINGMISLLKEFDAEVVGIGV 231 (271)
T ss_pred CHhHHHHHHHHHHCCCEEEEEEE
Confidence 99999999999999999777655
No 67
>PRK09246 amidophosphoribosyltransferase; Provisional
Probab=98.88 E-value=1e-08 Score=100.16 Aligned_cols=99 Identities=14% Similarity=0.044 Sum_probs=65.5
Q ss_pred HHHHHHHHhcCCC-CCCeEEEecCCChHHHHHHhhc--CCCeEE-EEEEEeCC------c------eE---EEeeeCCCC
Q 023987 169 IPLLKQRLHQLPD-ANNIVIAFPDDGAWKRFHKMLD--HFPTVV-CAKVREGD------K------RI---VRIKEGNPA 229 (274)
Q Consensus 169 ~~~la~~l~~~~~-~~~~viV~pd~G~~~ra~~~a~--~~~~~~-~~k~R~~~------~------~i---~~~~~~~v~ 229 (274)
...||+++.+... .+.++|++.-..+...|..+++ +.|+.. +-|.|... . .+ .......++
T Consensus 278 g~~LA~~l~~~~~~~~~D~VvpVP~s~~~~A~~la~~lgip~~~~l~k~~~~~rt~i~~~q~~R~~~vr~~f~~~~~~v~ 357 (501)
T PRK09246 278 GEKLAEKIKREWPDLDIDVVIPIPDTSRDAALEIARILGVPYREGFVKNRYVGRTFIMPGQAQRKKSVRQKLNAIRAEFK 357 (501)
T ss_pred HHHHHHHHHHHhcCCCCcEEEEeCccHHHHHHHHHHHHCCCccceEEEEecccccccCcCHHHHHHHHHhhcCCcccccc
Confidence 3556666654322 2234555555567778888875 555421 22222211 0 01 111245689
Q ss_pred CCeEEEEeccccchHHHHHHHHHHHhCCCcEEEEEEec
Q 023987 230 GCHVVIVDDLVQSGGTLIECQVLSYLLPAVLLKMCVSE 267 (274)
Q Consensus 230 gk~vlIVDDIi~TG~Tl~~aa~~Lk~~GA~~V~~~~tH 267 (274)
||+|+||||++|||.|+.++++.|+++||++|+++++=
T Consensus 358 gK~VlLVDDvitTGaTl~~~~~~L~~aGA~~V~v~v~a 395 (501)
T PRK09246 358 GKNVLLVDDSIVRGTTSEQIVQMAREAGAKKVYFASAA 395 (501)
T ss_pred CCeEEEEeccccccHHHHHHHHHHHHcCCCEEEEEEEc
Confidence 99999999999999999999999999999999998874
No 68
>TIGR01134 purF amidophosphoribosyltransferase. Alternate name: glutamine phosphoribosylpyrophosphate (PRPP) amidotransferase.
Probab=98.79 E-value=3.2e-08 Score=95.25 Aligned_cols=98 Identities=15% Similarity=0.046 Sum_probs=67.2
Q ss_pred HHHHHHHHhcCCCCCCeEEEecCCChHHHHHHhhc--CCCeEE-EEEEEeC------Cc------eE---EEeeeCCCCC
Q 023987 169 IPLLKQRLHQLPDANNIVIAFPDDGAWKRFHKMLD--HFPTVV-CAKVREG------DK------RI---VRIKEGNPAG 230 (274)
Q Consensus 169 ~~~la~~l~~~~~~~~~viV~pd~G~~~ra~~~a~--~~~~~~-~~k~R~~------~~------~i---~~~~~~~v~g 230 (274)
-..+++.|++....+.++||+.-..|...|..+++ +.|+.. +.|.|.. .. .+ .......++|
T Consensus 259 R~~~g~~La~~~~~~~D~Vv~VP~sg~~~A~~la~~lgip~~~~l~r~~~~~r~~i~~~q~~R~~~v~~k~~~~~~~~~g 338 (442)
T TIGR01134 259 RKRMGEKLARESPVEADVVIPVPDSGRSAALGFAQASGIPYREGLIKNRYVGRTFIMPTQELRELSVRLKLNPIREVFRG 338 (442)
T ss_pred HHHHHHHHHHhcCCCCEEEEEccCCHHHHHHHHHHHhCCCchHHeEEeccccccccCCCHHHHHHHHhhhcccccccCCC
Confidence 34566777665434555555554557888888876 556532 2333321 10 01 1122457899
Q ss_pred CeEEEEeccccchHHHHHHHHHHHhCCCcEEEEEEe
Q 023987 231 CHVVIVDDLVQSGGTLIECQVLSYLLPAVLLKMCVS 266 (274)
Q Consensus 231 k~vlIVDDIi~TG~Tl~~aa~~Lk~~GA~~V~~~~t 266 (274)
|+|+||||++|||.|+.++++.|+++||++|++++.
T Consensus 339 k~v~lvDD~ittG~T~~~~~~~l~~~ga~~v~~~~~ 374 (442)
T TIGR01134 339 KRVVLVDDSIVRGTTSRQIVKMLRDAGAKEVHVRIA 374 (442)
T ss_pred CEEEEEeccccccHHHHHHHHHHHHcCCcEEEEEEc
Confidence 999999999999999999999999999999998776
No 69
>KOG3367 consensus Hypoxanthine-guanine phosphoribosyltransferase [Nucleotide transport and metabolism]
Probab=98.78 E-value=1.7e-08 Score=83.65 Aligned_cols=99 Identities=17% Similarity=0.205 Sum_probs=73.6
Q ss_pred hHHHHHHHHhcCCCCCCeEEEecCCChHHHHHHhhcC---------CC--eEEEEEEEeCCc----eEEE---eeeCCCC
Q 023987 168 GIPLLKQRLHQLPDANNIVIAFPDDGAWKRFHKMLDH---------FP--TVVCAKVREGDK----RIVR---IKEGNPA 229 (274)
Q Consensus 168 ~~~~la~~l~~~~~~~~~viV~pd~G~~~ra~~~a~~---------~~--~~~~~k~R~~~~----~i~~---~~~~~v~ 229 (274)
..+.||+-+.+..+..+.++++..+||.++.+++.+. .| +.+++-+.+.+. .+.. ....++.
T Consensus 45 r~~rlakDi~~~~g~~~i~~lcVlkG~ykF~adLve~l~n~~s~~~~pmtvDFIR~kSY~n~~stg~iqiig~d~l~~lt 124 (216)
T KOG3367|consen 45 RVERLAKDIMKEIGNKPIIFLCVLKGGYKFFADLVERLKNRNSDRPLPMTVDFIRAKSYCNDQSTGDIQIIGGDDLSTLT 124 (216)
T ss_pred HHHHhhhhhhhccCCCceEEEEEecchhHHHHHHHHHHhhcccCCCcceeeeeeehhhhcCCcccCCceeecCCCHHHhc
Confidence 4677888888776777889999999999998887531 22 234443333322 2211 1123689
Q ss_pred CCeEEEEeccccchHHHHHHHHHHHhCCCcEEEEEEe
Q 023987 230 GCHVVIVDDLVQSGGTLIECQVLSYLLPAVLLKMCVS 266 (274)
Q Consensus 230 gk~vlIVDDIi~TG~Tl~~aa~~Lk~~GA~~V~~~~t 266 (274)
||+|+|||||++||.||......+++.++..|.++..
T Consensus 125 gK~VliVeDIvdTGrTl~~Lls~~~~~k~~~v~vasL 161 (216)
T KOG3367|consen 125 GKNVLIVEDIVDTGRTLSTLLSHMKAYKPSMVKVASL 161 (216)
T ss_pred CCcEEEEEeeccccchHHHHHHHHHhcCccceeeeee
Confidence 9999999999999999999999999999999988753
No 70
>PRK07631 amidophosphoribosyltransferase; Provisional
Probab=98.77 E-value=3.1e-08 Score=95.82 Aligned_cols=99 Identities=19% Similarity=0.098 Sum_probs=67.8
Q ss_pred HHHHHHHhcCCCCCCeEEEecCCChHHHHHHhhc--CCCeEE-EEEEEeCC------c------eE---EEeeeCCCCCC
Q 023987 170 PLLKQRLHQLPDANNIVIAFPDDGAWKRFHKMLD--HFPTVV-CAKVREGD------K------RI---VRIKEGNPAGC 231 (274)
Q Consensus 170 ~~la~~l~~~~~~~~~viV~pd~G~~~ra~~~a~--~~~~~~-~~k~R~~~------~------~i---~~~~~~~v~gk 231 (274)
..+.+.|.+....+.+++++.-..+...|..+++ +.|+.. +-|.|... . .+ .......++||
T Consensus 270 ~~~G~~La~~~~~~~D~VvpVP~s~~~~A~gla~~~gip~~~~lik~~~~~Rt~i~~~~~~R~~nv~~~f~~~~~~v~gk 349 (475)
T PRK07631 270 KNLGKRLALEAPVEADVVTGVPDSSISAAIGYAEATGIPYELGLIKNRYVGRTFIQPSQALREQGVKMKLSPVRGVVEGK 349 (475)
T ss_pred HHHHHHHHhhCCCCCcEEEEechhHHHHHHHHHHHHCCCcccceEEEecCCCCCcCCCHHHHHHHHhhhhhhcccccCCc
Confidence 3567777665434555666655567777887775 556532 22333321 0 01 11224568999
Q ss_pred eEEEEeccccchHHHHHHHHHHHhCCCcEEEEEEece
Q 023987 232 HVVIVDDLVQSGGTLIECQVLSYLLPAVLLKMCVSEF 268 (274)
Q Consensus 232 ~vlIVDDIi~TG~Tl~~aa~~Lk~~GA~~V~~~~tH~ 268 (274)
+|+||||++|||.|+.++++.|+++||++|++..+=.
T Consensus 350 ~VlLVDDsittGtTl~~~~~~L~~aGA~eV~v~~~sP 386 (475)
T PRK07631 350 RVVMVDDSIVRGTTSRRIVTMLREAGATEVHVRISSP 386 (475)
T ss_pred eEEEEeeeeccHHHHHHHHHHHHHcCCCEEEEEEeCC
Confidence 9999999999999999999999999999999976543
No 71
>KOG1712 consensus Adenine phosphoribosyl transferases [Nucleotide transport and metabolism]
Probab=98.75 E-value=3.6e-08 Score=80.94 Aligned_cols=102 Identities=21% Similarity=0.131 Sum_probs=78.1
Q ss_pred hHHHHHHHHhcCCCCCCeEEEecCCChHHHHHHhhc--CCCeEEEEEEEeCCceEE-------------EeeeCCC-CCC
Q 023987 168 GIPLLKQRLHQLPDANNIVIAFPDDGAWKRFHKMLD--HFPTVVCAKVREGDKRIV-------------RIKEGNP-AGC 231 (274)
Q Consensus 168 ~~~~la~~l~~~~~~~~~viV~pd~G~~~ra~~~a~--~~~~~~~~k~R~~~~~i~-------------~~~~~~v-~gk 231 (274)
...++++++++..+.+.++|++.++.|+-+-..+|. ++.++-++|.-+.+++.. ....+.+ .|.
T Consensus 44 lidlf~~h~~~~~~~~Id~iaGlEaRGFLFGP~iAlalG~~fVPiRK~gKLPG~~i~~~Y~lEYg~d~~Emq~~Ai~~g~ 123 (183)
T KOG1712|consen 44 LIDLFVDHYRETFEMKIDVIAGLEARGFLFGPSIALALGAGFVPIRKPGKLPGEVISESYELEYGEDRFEMQKGAIKPGQ 123 (183)
T ss_pred HHHHHHHHHHHHhcCcceEEEeeeecceecCcHHHHHhCCCeeecccCCCCCCceeEEEEeeecCccceeeeccccCCCC
Confidence 467888888876444578999999999888776664 677777776655554321 1123445 489
Q ss_pred eEEEEeccccchHHHHHHHHHHHhCCCcEEEEEEecee
Q 023987 232 HVVIVDDLVQSGGTLIECQVLSYLLPAVLLKMCVSEFE 269 (274)
Q Consensus 232 ~vlIVDDIi~TG~Tl~~aa~~Lk~~GA~~V~~~~tH~~ 269 (274)
+|+||||++.||||+.+|.+++.+.||.-|.+.|.-..
T Consensus 124 rvvvVDDllATGGTl~AA~~Ll~r~ga~vvE~~~vieL 161 (183)
T KOG1712|consen 124 RVVVVDDLLATGGTLAAATELLERVGAEVVECACVIEL 161 (183)
T ss_pred eEEEEechhhcCccHHHHHHHHHHhccEEEEEEEEEEc
Confidence 99999999999999999999999999999998886543
No 72
>PRK06388 amidophosphoribosyltransferase; Provisional
Probab=98.63 E-value=1.9e-07 Score=90.49 Aligned_cols=96 Identities=19% Similarity=0.141 Sum_probs=62.0
Q ss_pred HHHHHHhcCCCCCCeEEEe-cCCChHHHHHHhhc--CCCeEE-EEEEEeCC------c------eEEEe---eeCCCCCC
Q 023987 171 LLKQRLHQLPDANNIVIAF-PDDGAWKRFHKMLD--HFPTVV-CAKVREGD------K------RIVRI---KEGNPAGC 231 (274)
Q Consensus 171 ~la~~l~~~~~~~~~viV~-pd~G~~~ra~~~a~--~~~~~~-~~k~R~~~------~------~i~~~---~~~~v~gk 231 (274)
.+++.|.+....+.++||+ |+.| ...|..+++ +.|+.. +.|.|... . .+... ....++||
T Consensus 279 ~~G~~La~~~~~~~D~VvpVP~s~-~~~A~g~a~~~gip~~~~L~r~r~~~r~fi~~~q~~R~~~~~~kl~~~~~~i~gk 357 (474)
T PRK06388 279 RMGMRLAKESPVEADVVVPVPDSG-RSQAIGFSMASGIPYTEGLIKNRYSERTFIMPTQSDRKAAIKLKLNPIREVISGK 357 (474)
T ss_pred HHHHHHHhhccCCCcEEEeeCCCc-HHHHHHHHHHhCCCchhheEEecccCCcccCCchhhhhhceeEEeccccccccCc
Confidence 4666666543334444444 5554 445666664 555432 33444321 0 01111 12357899
Q ss_pred eEEEEeccccchHHHHHHHHHHHhCCCcEEEEEEec
Q 023987 232 HVVIVDDLVQSGGTLIECQVLSYLLPAVLLKMCVSE 267 (274)
Q Consensus 232 ~vlIVDDIi~TG~Tl~~aa~~Lk~~GA~~V~~~~tH 267 (274)
+|+||||+++||.|+.++++.|+++||++|++-.+=
T Consensus 358 ~VlLVDDsittGtTl~~~~~~L~~aGak~V~~ri~s 393 (474)
T PRK06388 358 RIVLVDDSIVRGNTMRFIVKIMRKYGAKEVHVRIGS 393 (474)
T ss_pred eEEEEeCeECcHHHHHHHHHHHHHcCCCEEEEEeCC
Confidence 999999999999999999999999999999986553
No 73
>PRK07847 amidophosphoribosyltransferase; Provisional
Probab=98.46 E-value=7.5e-07 Score=86.97 Aligned_cols=96 Identities=16% Similarity=0.024 Sum_probs=64.0
Q ss_pred HHHHHHHhcCCCCCCeEEEe-cCCChHHHHHHhhc--CCCeEE-EEEEEeCC---------c---eEEE---eeeCCCCC
Q 023987 170 PLLKQRLHQLPDANNIVIAF-PDDGAWKRFHKMLD--HFPTVV-CAKVREGD---------K---RIVR---IKEGNPAG 230 (274)
Q Consensus 170 ~~la~~l~~~~~~~~~viV~-pd~G~~~ra~~~a~--~~~~~~-~~k~R~~~---------~---~i~~---~~~~~v~g 230 (274)
..+.+.|.+....+.++|++ |+. |..-|..+++ +.|+.. +.|.|... . .+.. .....++|
T Consensus 289 ~~~G~~La~~~~~~~D~VvpVP~s-G~~~A~g~a~~~gip~~~~l~kn~~~grtfi~~~q~~r~~~~r~k~~~~~~~~~g 367 (510)
T PRK07847 289 VEIGRRLAREHPVEADLVIPVPES-GTPAAVGYAQESGIPFGQGLVKNAYVGRTFIQPSQTIRQLGIRLKLNPLREVIRG 367 (510)
T ss_pred HHHHHHHHhhCCCCCeEEEeccCc-hHHHHHHHHHHhCCChhhceEeecccccCccCcchhhhhhceeeecCccccccCC
Confidence 35677776654345556666 665 5666777775 555422 23332211 0 1111 11334799
Q ss_pred CeEEEEeccccchHHHHHHHHHHHhCCCcEEEEEEe
Q 023987 231 CHVVIVDDLVQSGGTLIECQVLSYLLPAVLLKMCVS 266 (274)
Q Consensus 231 k~vlIVDDIi~TG~Tl~~aa~~Lk~~GA~~V~~~~t 266 (274)
|+||||||+++||.|+.++++.|+++||++|++-.+
T Consensus 368 k~vllVDD~ittG~T~~~~~~~L~~~ga~~v~~ri~ 403 (510)
T PRK07847 368 KRLVVVDDSIVRGNTQRALVRMLREAGAAEVHVRIS 403 (510)
T ss_pred CEEEEEecccCchHHHHHHHHHHHHcCCCEEEEEEC
Confidence 999999999999999999999999999999998654
No 74
>TIGR01251 ribP_PPkin ribose-phosphate pyrophosphokinase. In some systems, close homologs lacking enzymatic activity exist and perform regulatory functions. The model is designated subfamily rather than equivalog for this reason.
Probab=98.44 E-value=1.1e-05 Score=74.29 Aligned_cols=137 Identities=16% Similarity=0.133 Sum_probs=100.7
Q ss_pred CcEEEEe-cCCcHHHHHHHHHHcCCcceeeeeEeee-CCCcceEEEeecCCCCCCeEEEEEecCCchhHHHHHHHHHhcc
Q 023987 15 KQVHLFY-CVECEELARKVAAQSDLITLQSINWRNF-ADGWPNLYINSAHDIRGQHVAFLASFSSPGVIFEQISVIYALP 92 (274)
Q Consensus 15 ~~~~i~~-~~~~~~la~~ia~~lg~~~~~~~~~~~F-~dGE~~~~v~~~~~v~g~~V~iiqs~~~~~~l~elll~~~a~r 92 (274)
++.+|++ ..+...+|..+|+.|| .++..+...++ ++||.+ ...+.++++|++|+|+..+.+... .++..+++++
T Consensus 159 ~~~viv~pd~g~~~~A~~lA~~Lg-~~~~~i~k~r~~~~~~~~-~~~~~~~v~g~~vliVDDii~tG~--Tl~~a~~~l~ 234 (308)
T TIGR01251 159 DNPVVVSPDAGGVERAKKVADALG-CPLAIIDKRRISATNEVE-VMNLVGDVEGKDVVIVDDIIDTGG--TIAKAAEILK 234 (308)
T ss_pred CCCEEEEECCchHHHHHHHHHHhC-CCEEEEEEEecCCCCEEE-EEecccccCCCEEEEEccccCCHH--HHHHHHHHHH
Confidence 3444544 5667799999999997 99998988888 888643 334567899999999999887754 3456778999
Q ss_pred ccCCceEEEEeecCCCCCccccccCCCcccHHHHHHHHhcCCCCCCCCCEEEEEeCCchhhhcccCCCCcccccchHHHH
Q 023987 93 RLFVASFTLVLPFFPTGSFERMEEEGDVATAFTMARILSNIPTSRGGPTSLVIYDIHALQERFYFSDHVLPLFETGIPLL 172 (274)
Q Consensus 93 ~~~a~~i~~viPY~~ysRqdr~~~~g~~~~a~~~a~ll~~~~~~~~g~d~ii~vdlH~~~~~~ff~~~~~~l~~~~~~~l 172 (274)
+.|++++.++.++.- ..+ ..+.++.+ .|+|+|++.|.|... .+|. ++..+ +.++++
T Consensus 235 ~~ga~~v~~~~th~v--------~~~-----~a~~~l~~------~~~~~iv~tdt~~~~--~~~~-~~~~v--~va~~l 290 (308)
T TIGR01251 235 SAGAKRVIAAATHGV--------FSG-----PAIERIAN------AGVEEVIVTNTIPHE--KHKP-KVSVI--SVAPLI 290 (308)
T ss_pred hcCCCEEEEEEEeee--------cCc-----HHHHHHHh------CCCCEEEEeCCCCcc--ccCC-CcEEE--EhHHHH
Confidence 999999999998311 122 23456666 479999999998754 2333 33333 678999
Q ss_pred HHHHhcC
Q 023987 173 KQRLHQL 179 (274)
Q Consensus 173 a~~l~~~ 179 (274)
|+.|.+.
T Consensus 291 a~~i~~~ 297 (308)
T TIGR01251 291 AEAIRRI 297 (308)
T ss_pred HHHHHHH
Confidence 9999775
No 75
>COG1926 Predicted phosphoribosyltransferases [General function prediction only]
Probab=98.20 E-value=1.5e-05 Score=68.59 Aligned_cols=100 Identities=16% Similarity=0.166 Sum_probs=74.5
Q ss_pred chHHHHHHHHhcCCCCCCeEEEecCCChHHHHHHhhc--CCCe--EEEEEEEeCC------------c------------
Q 023987 167 TGIPLLKQRLHQLPDANNIVIAFPDDGAWKRFHKMLD--HFPT--VVCAKVREGD------------K------------ 218 (274)
Q Consensus 167 ~~~~~la~~l~~~~~~~~~viV~pd~G~~~ra~~~a~--~~~~--~~~~k~R~~~------------~------------ 218 (274)
.+-..||+.|....+.+++++.+.-.||++-+..+++ +.++ .+++|--... +
T Consensus 9 dAGr~La~~l~~~~~~~~~iVlaLpRGGvpva~evA~~lga~ldvliVrKiG~P~n~E~aiGAvae~g~~v~n~~~~~~~ 88 (220)
T COG1926 9 DAGRKLAQELAALRDLKDVIVLALPRGGVPVAFEVAQALGAPLDVLIVRKIGAPGNPELAIGAVAEGGDVVLNYDVVRSL 88 (220)
T ss_pred HHHHHHHHHHHhhccCCCcEEEEecCCCchHHHHHHHHhCCCeeEEEEeecCCCCCchhceeeeccCCcEecchhhhhhc
Confidence 3567899999876335778999999999999999986 5554 3344432100 0
Q ss_pred ----------------eEE--------EeeeCCCCCCeEEEEeccccchHHHHHHHHHHHhCCCcEEEEEEe
Q 023987 219 ----------------RIV--------RIKEGNPAGCHVVIVDDLVQSGGTLIECQVLSYLLPAVLLKMCVS 266 (274)
Q Consensus 219 ----------------~i~--------~~~~~~v~gk~vlIVDDIi~TG~Tl~~aa~~Lk~~GA~~V~~~~t 266 (274)
++. .....+++||+||||||=+.||.|+..+++.++++|+++|.+++-
T Consensus 89 ~i~~~~i~~~~~~e~~El~rrr~~yr~~~~~~~~~g~~VIlVDDGiATGatm~aAi~~~r~~~~~~IviAVP 160 (220)
T COG1926 89 GIDDAYIEAAAARERKELLRRREAYRGGRPVPSLKGRTVILVDDGIATGATMKAAVRALRAKGPKEIVIAVP 160 (220)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCEEEEEeCCcchhHHHHHHHHHHHhcCCceEEEEcc
Confidence 000 011237899999999999999999999999999999999998764
No 76
>COG2065 PyrR Pyrimidine operon attenuation protein/uracil phosphoribosyltransferase [Nucleotide transport and metabolism]
Probab=98.16 E-value=1.5e-05 Score=66.04 Aligned_cols=95 Identities=14% Similarity=0.148 Sum_probs=66.9
Q ss_pred HHHHHHhcC-CCCCCeEEEecCCChHHHHHHhhc------C--CCeEEE--EEEEeC----C--ceE--EEeeeCCCCCC
Q 023987 171 LLKQRLHQL-PDANNIVIAFPDDGAWKRFHKMLD------H--FPTVVC--AKVREG----D--KRI--VRIKEGNPAGC 231 (274)
Q Consensus 171 ~la~~l~~~-~~~~~~viV~pd~G~~~ra~~~a~------~--~~~~~~--~k~R~~----~--~~i--~~~~~~~v~gk 231 (274)
.++.+|.+. -+.++.++++.-.+|++.|..+++ + .|+..+ .-.|+. + ... ......++.||
T Consensus 18 Ria~eIiErnk~~~~~vlvGIktrGv~lA~rl~~~i~~~Eg~~vp~g~lDIt~yRDDl~~~~~~~p~~~~t~~~~di~~k 97 (179)
T COG2065 18 RIAHEIIERNKGLDNLVLVGIKTRGVPLAERLAERIEELEGIEVPVGELDITLYRDDLTQKGPLRPQAKTTILPFDITGK 97 (179)
T ss_pred HHHHHHHHHhCCCCceEEEeEecCCHHHHHHHHHHHHHHhCCCCCeeeEEeEEeechhhhcCccCCcccCccCcccccCC
Confidence 355555433 256789999999999999998874 2 333322 223421 1 001 12346689999
Q ss_pred eEEEEeccccchHHHHHHHHHHHhCC-CcEEEEEE
Q 023987 232 HVVIVDDLVQSGGTLIECQVLSYLLP-AVLLKMCV 265 (274)
Q Consensus 232 ~vlIVDDIi~TG~Tl~~aa~~Lk~~G-A~~V~~~~ 265 (274)
+|++|||++-||.|+.+|.+.|.+.| +.+|..+|
T Consensus 98 ~VILVDDVLytGRTIRAAldal~d~GRPa~I~Lav 132 (179)
T COG2065 98 RVILVDDVLYTGRTIRAALDALVDYGRPAKIQLAV 132 (179)
T ss_pred EEEEEeeecccCccHHHHHHHHHhcCCcceEEEEE
Confidence 99999999999999999999999997 55676665
No 77
>COG0034 PurF Glutamine phosphoribosylpyrophosphate amidotransferase [Nucleotide transport and metabolism]
Probab=98.01 E-value=1.5e-05 Score=75.68 Aligned_cols=97 Identities=15% Similarity=0.032 Sum_probs=67.5
Q ss_pred HHHHHHHhcCCCCCCeEEEecCCChHHHHHHhhc--CCCeEE-EEEEEeCCceE------------E---EeeeCCCCCC
Q 023987 170 PLLKQRLHQLPDANNIVIAFPDDGAWKRFHKMLD--HFPTVV-CAKVREGDKRI------------V---RIKEGNPAGC 231 (274)
Q Consensus 170 ~~la~~l~~~~~~~~~viV~pd~G~~~ra~~~a~--~~~~~~-~~k~R~~~~~i------------~---~~~~~~v~gk 231 (274)
..+.+.|.+....+-++|++.-..|..-|-.+|+ +.|+.. +-|.|+.+..+ . ......++||
T Consensus 270 ~~mG~~La~e~~~eaDvVipVPDSg~~aAig~A~~sGiPy~~GliKNrYvgRTFI~P~q~~R~~~Vr~KLnpvr~~v~GK 349 (470)
T COG0034 270 KRMGEKLAEEIPVEADVVIPVPDSGRPAAIGYARASGIPYEEGLIKNRYVGRTFIMPTQELREKGVRLKLNPVREVVKGK 349 (470)
T ss_pred HHHHHHHHHhCCccccEEEecCCCChHHHHHHHHHhCCchhhccccccccceeeeCCcHHHHHhhhhhhcCchHHHhCCC
Confidence 4467777665434445777655567777776664 555432 23555433111 0 1234578999
Q ss_pred eEEEEeccccchHHHHHHHHHHHhCCCcEEEEEEe
Q 023987 232 HVVIVDDLVQSGGTLIECQVLSYLLPAVLLKMCVS 266 (274)
Q Consensus 232 ~vlIVDDIi~TG~Tl~~aa~~Lk~~GA~~V~~~~t 266 (274)
+|+||||-|-.|.|..+..+.||++||++|++...
T Consensus 350 rVvlVDDSIVRGTTsr~IV~mlReAGAkEVHvria 384 (470)
T COG0034 350 RVVLVDDSIVRGTTSRRIVQMLREAGAKEVHVRIA 384 (470)
T ss_pred eEEEEccccccCccHHHHHHHHHHhCCCEEEEEec
Confidence 99999999999999999999999999999998654
No 78
>PF14681 UPRTase: Uracil phosphoribosyltransferase; PDB: 1V9S_B 1UPF_A 1UPU_D 1JLR_B 1BD4_A 1BD3_C 1JLS_D 1XTV_C 1XTU_H 3G6W_C ....
Probab=97.90 E-value=0.00016 Score=62.81 Aligned_cols=84 Identities=10% Similarity=0.055 Sum_probs=63.5
Q ss_pred CeEEEecCCChHHHHHHhhc---CCCeEEEEEEEeCCc-e--E-EEeeeCCCCCCeEEEEeccccchHHHHHHHHHHHhC
Q 023987 184 NIVIAFPDDGAWKRFHKMLD---HFPTVVCAKVREGDK-R--I-VRIKEGNPAGCHVVIVDDLVQSGGTLIECQVLSYLL 256 (274)
Q Consensus 184 ~~viV~pd~G~~~ra~~~a~---~~~~~~~~k~R~~~~-~--i-~~~~~~~v~gk~vlIVDDIi~TG~Tl~~aa~~Lk~~ 256 (274)
+.++|+...+|......+.+ +.++..+.-+|+... + . ...+..++++++|+|+|-|+.||+|+.++.+.|++.
T Consensus 68 ~i~~V~IlRaG~~m~~~~~~~~p~a~~g~i~i~r~~~t~~p~~~y~~LP~~i~~~~VillDpmlaTG~s~~~ai~~L~~~ 147 (207)
T PF14681_consen 68 KICIVPILRAGLPMLEGFREVFPDARVGHIGIQRDEETLEPVLYYNKLPEDIENRKVILLDPMLATGGSAIAAIEILKEH 147 (207)
T ss_dssp CEEEEEETTTHHHHHHHHHHHSTTSEEEEEEEEEETTTSSEEEEEEE--TTGTTSEEEEEESEESSSHHHHHHHHHHHHT
T ss_pred cEEEEEEeCCcHHHHHHHHHhCCCcceEEEEEEEcCCccceeeeHhhCCCCccCCEEEEEeccccchhhHHHHHHHHHHc
Confidence 68899999999888776654 455666655665543 2 2 234567889999999999999999999999999999
Q ss_pred CC--cEEEEEEec
Q 023987 257 PA--VLLKMCVSE 267 (274)
Q Consensus 257 GA--~~V~~~~tH 267 (274)
|+ ++|.+++.-
T Consensus 148 G~~~~~I~~v~~i 160 (207)
T PF14681_consen 148 GVPEENIIIVSVI 160 (207)
T ss_dssp TG-GGEEEEEEEE
T ss_pred CCCcceEEEEEEE
Confidence 87 677776543
No 79
>PLN02541 uracil phosphoribosyltransferase
Probab=97.86 E-value=0.0001 Score=65.61 Aligned_cols=81 Identities=14% Similarity=0.122 Sum_probs=55.7
Q ss_pred eEEEecCCChHHHHHHhhc---CCCeEEEEEEEeCCc-eE--E-EeeeCCCC-CCeEEEEeccccchHHHHHHHHHHHhC
Q 023987 185 IVIAFPDDGAWKRFHKMLD---HFPTVVCAKVREGDK-RI--V-RIKEGNPA-GCHVVIVDDLVQSGGTLIECQVLSYLL 256 (274)
Q Consensus 185 ~viV~pd~G~~~ra~~~a~---~~~~~~~~k~R~~~~-~i--~-~~~~~~v~-gk~vlIVDDIi~TG~Tl~~aa~~Lk~~ 256 (274)
.++|+....|......+.+ +.....+.-+|+... +. . ..+..++. +++|+|+|||+.||+|+..+.+.|++.
T Consensus 104 i~~V~ILRAGl~m~~g~~~~~P~a~vg~i~~~rd~~t~e~~~yy~kLP~~i~~~~~VlllDpmLATGgS~~~ai~~L~~~ 183 (244)
T PLN02541 104 VAVVPILRAGLVLLEHASSVLPATKTYHLGFVRDEETLQPSMYLNKLPDKFPEGSRVLVVDPMLATGGTIVAAIDELVSR 183 (244)
T ss_pred EEEEeEeCCcHhHHHHHHhhCCCCeeEEEEEEEcccccceEEeeccCchhcCCCCEEEEECcchhhhHHHHHHHHHHHHc
Confidence 6778888777777655543 333444444454321 21 1 12345665 679999999999999999999999999
Q ss_pred CCc--EEEEEE
Q 023987 257 PAV--LLKMCV 265 (274)
Q Consensus 257 GA~--~V~~~~ 265 (274)
|+. +|.+++
T Consensus 184 Gv~~~~I~~v~ 194 (244)
T PLN02541 184 GASVEQIRVVC 194 (244)
T ss_pred CCCcccEEEEE
Confidence 997 666554
No 80
>COG0035 Upp Uracil phosphoribosyltransferase [Nucleotide transport and metabolism]
Probab=97.62 E-value=0.00032 Score=60.65 Aligned_cols=83 Identities=16% Similarity=0.102 Sum_probs=61.8
Q ss_pred CeEEEecCCChHHHHHHhhcCC---CeEEEEEEEeCCc-eEE---EeeeCCCCCCeEEEEeccccchHHHHHHHHHHHhC
Q 023987 184 NIVIAFPDDGAWKRFHKMLDHF---PTVVCAKVREGDK-RIV---RIKEGNPAGCHVVIVDDLVQSGGTLIECQVLSYLL 256 (274)
Q Consensus 184 ~~viV~pd~G~~~ra~~~a~~~---~~~~~~k~R~~~~-~i~---~~~~~~v~gk~vlIVDDIi~TG~Tl~~aa~~Lk~~ 256 (274)
+.++|+....|+.....+.+-+ .+..+--+|+... +.. ..+..++++++|+|+|-|+.||+|+..|.+.|++.
T Consensus 71 ~i~~V~ILRAGl~m~~gl~~~~P~a~vG~ig~~Rdeet~~p~~yy~KLP~~~~~~~viv~DPMLATG~s~i~ai~~L~~~ 150 (210)
T COG0035 71 KIVIVPILRAGLGMVEGLLKLIPSARVGHIGIYRDEETLEPVLYYEKLPEDIDERTVIVLDPMLATGGSAIAAIDLLKKR 150 (210)
T ss_pred cEEEEEEeeccccHHHHHHHhCCcceEEEEEEEecCccCceehhHHhCCCcccCCeEEEECchhhccHhHHHHHHHHHHh
Confidence 3678888877877776665433 3444445565432 221 23455899999999999999999999999999999
Q ss_pred -CCcEEEEEEe
Q 023987 257 -PAVLLKMCVS 266 (274)
Q Consensus 257 -GA~~V~~~~t 266 (274)
|+++|.++|.
T Consensus 151 G~~~~I~~v~~ 161 (210)
T COG0035 151 GGPKNIKVVSL 161 (210)
T ss_pred CCCceEEEEEE
Confidence 9999888664
No 81
>KOG0572 consensus Glutamine phosphoribosylpyrophosphate amidotransferase [Nucleotide transport and metabolism]
Probab=97.47 E-value=0.00025 Score=66.00 Aligned_cols=43 Identities=23% Similarity=0.135 Sum_probs=39.2
Q ss_pred eeeCCCCCCeEEEEeccccchHHHHHHHHHHHhCCCcEEEEEE
Q 023987 223 IKEGNPAGCHVVIVDDLVQSGGTLIECQVLSYLLPAVLLKMCV 265 (274)
Q Consensus 223 ~~~~~v~gk~vlIVDDIi~TG~Tl~~aa~~Lk~~GA~~V~~~~ 265 (274)
.+...++||+|+||||-|--|.|...+.+.||++||++|+.-.
T Consensus 349 ~l~~~~~GKrvvlVDDSIVRGtTs~~IVkmlreaGAkeVh~ri 391 (474)
T KOG0572|consen 349 PLRQNFEGKRVVLVDDSIVRGTTSSPIVKMLREAGAKEVHIRI 391 (474)
T ss_pred cchhhcCCceEEEEecceeccCchHHHHHHHHHcCCcEEEEEe
Confidence 3456899999999999999999999999999999999998744
No 82
>PRK07199 phosphoribosylpyrophosphate synthetase; Provisional
Probab=97.27 E-value=0.017 Score=53.10 Aligned_cols=132 Identities=16% Similarity=0.084 Sum_probs=90.0
Q ss_pred cEEEEe-cCCcHHHHHHHHHHcCCcceeeeeEeeeCCCcceEEEeecCCCCCCeEEEEEecCCchhHHHHHHHHHhcccc
Q 023987 16 QVHLFY-CVECEELARKVAAQSDLITLQSINWRNFADGWPNLYINSAHDIRGQHVAFLASFSSPGVIFEQISVIYALPRL 94 (274)
Q Consensus 16 ~~~i~~-~~~~~~la~~ia~~lg~~~~~~~~~~~F~dGE~~~~v~~~~~v~g~~V~iiqs~~~~~~l~elll~~~a~r~~ 94 (274)
+..+++ ......++..+|+.|| +++.-+.-.+..+++.++.....+++.|++|+||..+.+-...|. ..++.||+.
T Consensus 161 ~~vVVsPd~g~~~~a~~la~~l~-~~~~~~~K~R~~~~~~~~~~~~~~~v~Gr~vIIVDDIidTG~Tl~--~aa~~Lk~~ 237 (301)
T PRK07199 161 RPLLIGPDEESEQWVAAVAERAG-APHAVLRKTRHGDRDVEISLPDAAPWAGRTPVLVDDIVSTGRTLI--EAARQLRAA 237 (301)
T ss_pred CcEEEEeCCChHHHHHHHHHHhC-CCEEEEEEEecCCCeEEEEeccCcccCCCEEEEEecccCcHHHHH--HHHHHHHHC
Confidence 344444 5667799999999997 988766666666664444333345789999999998876533322 567889999
Q ss_pred CCceEEEEeecCCCCCccccccCCCcccHHHHHHHHhcCCCCCCCCCEEEEEeCCchhhhcccCCCCcccccchHHHHHH
Q 023987 95 FVASFTLVLPFFPTGSFERMEEEGDVATAFTMARILSNIPTSRGGPTSLVIYDIHALQERFYFSDHVLPLFETGIPLLKQ 174 (274)
Q Consensus 95 ~a~~i~~viPY~~ysRqdr~~~~g~~~~a~~~a~ll~~~~~~~~g~d~ii~vdlH~~~~~~ff~~~~~~l~~~~~~~la~ 174 (274)
||++|.++.-..=. +.....++.. .|+++|++-|-+... ...+ +.++++|+
T Consensus 238 GA~~V~~~~tHgvf-------------s~~a~~~l~~------~~i~~iv~Tdti~~~--------~~~~--sva~lla~ 288 (301)
T PRK07199 238 GAASPDCVVVHALF-------------AGDAYSALAA------AGIARVVSTDTVPHP--------SNAI--SLAPLLAE 288 (301)
T ss_pred CCcEEEEEEEeeeC-------------ChHHHHHHHh------CCCCEEEEeCCccCC--------CCEE--ehHHHHHH
Confidence 99999988755322 2223445544 489999999975411 1112 56899999
Q ss_pred HHhcC
Q 023987 175 RLHQL 179 (274)
Q Consensus 175 ~l~~~ 179 (274)
.|++.
T Consensus 289 ~i~~~ 293 (301)
T PRK07199 289 ALRRE 293 (301)
T ss_pred HHHHH
Confidence 99764
No 83
>PRK00934 ribose-phosphate pyrophosphokinase; Provisional
Probab=97.07 E-value=0.024 Score=51.69 Aligned_cols=127 Identities=14% Similarity=0.136 Sum_probs=84.4
Q ss_pred cEEEEecCCcHHHHHHHHHHcCCcceeeeeEeeeCCCcceEEEe-ecCCCCCCeEEEEEecCCch-hHHHHHHHHHhccc
Q 023987 16 QVHLFYCVECEELARKVAAQSDLITLQSINWRNFADGWPNLYIN-SAHDIRGQHVAFLASFSSPG-VIFEQISVIYALPR 93 (274)
Q Consensus 16 ~~~i~~~~~~~~la~~ia~~lg~~~~~~~~~~~F~dGE~~~~v~-~~~~v~g~~V~iiqs~~~~~-~l~elll~~~a~r~ 93 (274)
.+.+-...+...+|..+|+.|| .++.-+.-.+...++ +.+. ...++.|++|+||..+.+-. .+. ..++.|++
T Consensus 156 ~vvv~pd~Ga~~~a~~lA~~l~-~~~~~i~k~r~~~~~--~~~~~~~~~v~Gk~VlIVDDIi~TG~Tl~---~aa~~Lk~ 229 (285)
T PRK00934 156 PLVLAPDKGALELAKEAAEILG-CEYDYLEKTRISPTE--VEIAPKNLDVKGKDVLIVDDIISTGGTMA---TAIKILKE 229 (285)
T ss_pred CEEEEeCCchHHHHHHHHHHhC-CCEEEEEEEecCCCe--EEEeccccccCCCEEEEEcCccccHHHHH---HHHHHHHH
Confidence 3444335778899999999997 988766655555543 3332 23468999999999876653 443 45678899
Q ss_pred cCCceEEEEeecCCCCCccccccCCCcccHHHHHHHHhcCCCCCCCCCEEEEEeCCchhhhcccCCCCcccccchHHHHH
Q 023987 94 LFVASFTLVLPFFPTGSFERMEEEGDVATAFTMARILSNIPTSRGGPTSLVIYDIHALQERFYFSDHVLPLFETGIPLLK 173 (274)
Q Consensus 94 ~~a~~i~~viPY~~ysRqdr~~~~g~~~~a~~~a~ll~~~~~~~~g~d~ii~vdlH~~~~~~ff~~~~~~l~~~~~~~la 173 (274)
.||+++.++.-+.=. +...+-++.+ .|+++|++.|-+.... ..+ +.++++|
T Consensus 230 ~GA~~V~~~~~H~i~-------------~~~a~~~l~~------~~i~~i~~tnti~~~~--------~~~--~va~~la 280 (285)
T PRK00934 230 QGAKKVYVACVHPVL-------------VGDAILKLYN------AGVDEIIVTDTLESEV--------SKI--SVAPLIA 280 (285)
T ss_pred CCCCEEEEEEEeecc-------------CcHHHHHHHh------CCCCEEEEcCCCCCCc--------eEE--EcHHHHH
Confidence 999999887754111 1122334444 4899999999864221 112 5688999
Q ss_pred HHHh
Q 023987 174 QRLH 177 (274)
Q Consensus 174 ~~l~ 177 (274)
+.|+
T Consensus 281 ~~i~ 284 (285)
T PRK00934 281 DLLK 284 (285)
T ss_pred HHHh
Confidence 9884
No 84
>PRK04923 ribose-phosphate pyrophosphokinase; Provisional
Probab=97.05 E-value=0.042 Score=50.95 Aligned_cols=139 Identities=16% Similarity=0.093 Sum_probs=89.3
Q ss_pred CcEEEEecCCcHHHHHHHHHHcCCcceeeeeEeeeCCCcceEEEeecCCCCCCeEEEEEecCCchhHHHHHHHHHhcccc
Q 023987 15 KQVHLFYCVECEELARKVAAQSDLITLQSINWRNFADGWPNLYINSAHDIRGQHVAFLASFSSPGVIFEQISVIYALPRL 94 (274)
Q Consensus 15 ~~~~i~~~~~~~~la~~ia~~lg~~~~~~~~~~~F~dGE~~~~v~~~~~v~g~~V~iiqs~~~~~~l~elll~~~a~r~~ 94 (274)
..+.+-.-.++...|+.+|+.||+.++.-+.-.+..+++. ....+..++.|++|+||..+.+-... +...+++|++.
T Consensus 167 ~~vVVsPD~Ga~~rA~~lA~~L~~~~~~~~~K~R~~~~~~-~~~~~~gdv~Gr~viIVDDIidTG~T--l~~aa~~Lk~~ 243 (319)
T PRK04923 167 NLIVVSPDVGGVVRARAVAKRLDDADLAIIDKRRPRANVA-TVMNIIGDVQGKTCVLVDDLVDTAGT--LCAAAAALKQR 243 (319)
T ss_pred CCEEEEECCchHHHHHHHHHHcCCCCEEEeccccCCCCce-EEEecccCCCCCEEEEEecccCchHH--HHHHHHHHHHC
Confidence 3444444677889999999999525665555444444432 23445678999999999988765332 22468889999
Q ss_pred CCceEEEEeecCCCCCccccccCCCcccHHHHHHHHhcCCCCCCCCCEEEEEeCCc--hhhhcccCCCCcccccchHHHH
Q 023987 95 FVASFTLVLPFFPTGSFERMEEEGDVATAFTMARILSNIPTSRGGPTSLVIYDIHA--LQERFYFSDHVLPLFETGIPLL 172 (274)
Q Consensus 95 ~a~~i~~viPY~~ysRqdr~~~~g~~~~a~~~a~ll~~~~~~~~g~d~ii~vdlH~--~~~~~ff~~~~~~l~~~~~~~l 172 (274)
||++|.++.-..=++. ..+-++.+ +|+++|++-|-.. ...+.. + .+..+ +.++++
T Consensus 244 GA~~V~~~~THgvfs~-------------~a~~~l~~------s~i~~iv~Tdtip~~~~~~~~-~-k~~~i--sva~ll 300 (319)
T PRK04923 244 GALKVVAYITHPVLSG-------------PAVDNINN------SQLDELVVTDTIPLSEAARAC-A-KIRQL--SVAELL 300 (319)
T ss_pred CCCEEEEEEECcccCc-------------hHHHHHhh------CCCCEEEEeCCccCchhhccc-C-CeEEE--EhHHHH
Confidence 9999998877643322 23345544 4899999998642 221111 1 11122 568999
Q ss_pred HHHHhcC
Q 023987 173 KQRLHQL 179 (274)
Q Consensus 173 a~~l~~~ 179 (274)
|+.|.+.
T Consensus 301 a~~i~~~ 307 (319)
T PRK04923 301 AETIRRI 307 (319)
T ss_pred HHHHHHH
Confidence 9999765
No 85
>PRK03092 ribose-phosphate pyrophosphokinase; Provisional
Probab=96.85 E-value=0.077 Score=48.87 Aligned_cols=137 Identities=15% Similarity=0.111 Sum_probs=89.2
Q ss_pred CcEEEEecCCcHHHHHHHHHHcCCcceeeeeEeeeCC--CcceEEEeecCCCCCCeEEEEEecCCch-hHHHHHHHHHhc
Q 023987 15 KQVHLFYCVECEELARKVAAQSDLITLQSINWRNFAD--GWPNLYINSAHDIRGQHVAFLASFSSPG-VIFEQISVIYAL 91 (274)
Q Consensus 15 ~~~~i~~~~~~~~la~~ia~~lg~~~~~~~~~~~F~d--GE~~~~v~~~~~v~g~~V~iiqs~~~~~-~l~elll~~~a~ 91 (274)
..+.+-.-.+...+|..+|+.||+.++.-+.-.+..+ |+. ....+..++.|++|+||..+.+-. .+. ..++.|
T Consensus 149 ~~vvVspd~Ga~~~a~~la~~L~~~~~~~i~k~R~~~~~~~~-~~~~~~~dv~gr~viIVDDIi~TG~Tl~---~aa~~L 224 (304)
T PRK03092 149 NVTVVSPDAGRVRVAEQWADRLGGAPLAFIHKTRDPTVPNQV-VANRVVGDVEGRTCVLVDDMIDTGGTIA---GAVRAL 224 (304)
T ss_pred CcEEEEecCchHHHHHHHHHHcCCCCEEEEEEEcccCCCCce-EEEecCcCCCCCEEEEEccccCcHHHHH---HHHHHH
Confidence 3344433577789999999999536777676666433 332 244567789999999999876653 443 456888
Q ss_pred cccCCceEEEEeecCCCCCccccccCCCcccHHHHHHHHhcCCCCCCCCCEEEEEeCCc--hhhhcccCCCCcccccchH
Q 023987 92 PRLFVASFTLVLPFFPTGSFERMEEEGDVATAFTMARILSNIPTSRGGPTSLVIYDIHA--LQERFYFSDHVLPLFETGI 169 (274)
Q Consensus 92 r~~~a~~i~~viPY~~ysRqdr~~~~g~~~~a~~~a~ll~~~~~~~~g~d~ii~vdlH~--~~~~~ff~~~~~~l~~~~~ 169 (274)
++.|+++|.++.-+.=.+ ...+-++.+ .|+++|++.|-+. .... ...+..+ +.+
T Consensus 225 k~~Ga~~I~~~~tH~v~~-------------~~a~~~l~~------~~~~~i~~t~tip~~~~~~---~~~~~~~--sva 280 (304)
T PRK03092 225 KEAGAKDVIIAATHGVLS-------------GPAAERLKN------CGAREVVVTDTLPIPEEKR---FDKLTVL--SIA 280 (304)
T ss_pred HhcCCCeEEEEEEcccCC-------------hHHHHHHHH------CCCCEEEEeeeeccchhhc---CCCeEEE--EhH
Confidence 999999999888433222 223345554 4899999999642 2210 0111222 568
Q ss_pred HHHHHHHhcC
Q 023987 170 PLLKQRLHQL 179 (274)
Q Consensus 170 ~~la~~l~~~ 179 (274)
+++|+.|...
T Consensus 281 ~~la~~i~~~ 290 (304)
T PRK03092 281 PLLARAIREV 290 (304)
T ss_pred HHHHHHHHHH
Confidence 8999999765
No 86
>PRK02458 ribose-phosphate pyrophosphokinase; Provisional
Probab=96.60 E-value=0.077 Score=49.28 Aligned_cols=137 Identities=14% Similarity=0.064 Sum_probs=87.8
Q ss_pred CcEEEEe-cCCcHHHHHHHHHHcCCcceeeeeEeeeCCCcceEEEeecCCCCCCeEEEEEecCCchhHHHHHHHHHhccc
Q 023987 15 KQVHLFY-CVECEELARKVAAQSDLITLQSINWRNFADGWPNLYINSAHDIRGQHVAFLASFSSPGVIFEQISVIYALPR 93 (274)
Q Consensus 15 ~~~~i~~-~~~~~~la~~ia~~lg~~~~~~~~~~~F~dGE~~~~v~~~~~v~g~~V~iiqs~~~~~~l~elll~~~a~r~ 93 (274)
.++++++ -.+...+|+.+|+.|| +++.-+...+ .+.+. ....+..+|.|++|+||..+.+-... +...++.|++
T Consensus 169 ~~~vvV~pd~Ga~~~A~~la~~L~-~~~~~~~~~r-~~~~~-~~~~i~gdV~gk~viIVDDIidTG~T--l~~aa~~Lk~ 243 (323)
T PRK02458 169 SDVVVVSPKNSGIKRARSLAEYLD-APIAIIDYAQ-DDSER-EEGYIIGDVAGKKAILIDDILNTGKT--FAEAAKIVER 243 (323)
T ss_pred CceEEEEECCChHHHHHHHHHHhC-CCEEEEEEec-CCCcc-eeeccccccCCCEEEEEcceeCcHHH--HHHHHHHHHh
Confidence 4455554 5668899999999997 8876555333 22221 12234568999999999987765332 2246788999
Q ss_pred cCCceEEEEeecCCCCCccccccCCCcccHHHHHHHHhcCCCCCCCCCEEEEEeCCchhhhcccCCCCcccccchHHHHH
Q 023987 94 LFVASFTLVLPFFPTGSFERMEEEGDVATAFTMARILSNIPTSRGGPTSLVIYDIHALQERFYFSDHVLPLFETGIPLLK 173 (274)
Q Consensus 94 ~~a~~i~~viPY~~ysRqdr~~~~g~~~~a~~~a~ll~~~~~~~~g~d~ii~vdlH~~~~~~ff~~~~~~l~~~~~~~la 173 (274)
.||++|.++.-..=++. ....++.+ +|+|+|++-|-+..... ..+ .+..+ +.++++|
T Consensus 244 ~GA~~V~~~~tHgif~~-------------~a~~~l~~------s~i~~iv~TdTi~~~~~-~~~-k~~~i--sva~lla 300 (323)
T PRK02458 244 EGATEIYAVASHGLFAG-------------GAAEVLEN------APIKEILVTDSVATKER-VPK-NVTYL--SASELIA 300 (323)
T ss_pred CCCCcEEEEEEChhcCc-------------hHHHHHhh------CCCCEEEEECCcCCchh-cCC-CcEEE--EhHHHHH
Confidence 99999999877653322 23334444 48999999987532211 101 11222 5688999
Q ss_pred HHHhcC
Q 023987 174 QRLHQL 179 (274)
Q Consensus 174 ~~l~~~ 179 (274)
+.|.+.
T Consensus 301 ~~i~~~ 306 (323)
T PRK02458 301 DAIIRI 306 (323)
T ss_pred HHHHHH
Confidence 998764
No 87
>PRK01259 ribose-phosphate pyrophosphokinase; Provisional
Probab=96.59 E-value=0.12 Score=47.68 Aligned_cols=140 Identities=19% Similarity=0.124 Sum_probs=89.7
Q ss_pred CcEEEEe-cCCcHHHHHHHHHHcCCcceeeeeEeeeCCCcceEEEeecCCCCCCeEEEEEecCCchhHHHHHHHHHhccc
Q 023987 15 KQVHLFY-CVECEELARKVAAQSDLITLQSINWRNFADGWPNLYINSAHDIRGQHVAFLASFSSPGVIFEQISVIYALPR 93 (274)
Q Consensus 15 ~~~~i~~-~~~~~~la~~ia~~lg~~~~~~~~~~~F~dGE~~~~v~~~~~v~g~~V~iiqs~~~~~~l~elll~~~a~r~ 93 (274)
.+.+|++ ..+...+|..+|+.|| +++.-+.-.+..+++. ....+.+++.|++|+|+..+.+-...|. ..++.|++
T Consensus 158 ~~~vvv~pd~Gg~~~A~~la~~Lg-~~~~~~~k~r~~~~~~-~~~~~~~~~~g~~vliVDDii~TG~T~~--~a~~~l~~ 233 (309)
T PRK01259 158 ENLVVVSPDVGGVVRARALAKRLD-ADLAIIDKRRPRANVS-EVMNIIGDVEGRDCILVDDMIDTAGTLC--KAAEALKE 233 (309)
T ss_pred CCcEEEEECCCcHHHHHHHHHHhC-CCEEEEEeecccceeE-EEEeecccCCCCEEEEEecccCcHHHHH--HHHHHHHc
Confidence 4555555 5778899999999997 9887766666555542 2334557899999999998766543332 46688899
Q ss_pred cCCceEEEEeecCCCCCccccccCCCcccHHHHHHHHhcCCCCCCCCCEEEEEeCCchhhhcccCCCCcccccchHHHHH
Q 023987 94 LFVASFTLVLPFFPTGSFERMEEEGDVATAFTMARILSNIPTSRGGPTSLVIYDIHALQERFYFSDHVLPLFETGIPLLK 173 (274)
Q Consensus 94 ~~a~~i~~viPY~~ysRqdr~~~~g~~~~a~~~a~ll~~~~~~~~g~d~ii~vdlH~~~~~~ff~~~~~~l~~~~~~~la 173 (274)
.|++++.++..+.=. +...+-++.+ .++|++++.|.+...........+..+ +.++++|
T Consensus 234 ~Ga~~v~~~~tH~i~-------------~~~a~~~l~~------~~~~~iv~t~ti~~~~~~~~~~k~~~i--sva~~ia 292 (309)
T PRK01259 234 RGAKSVYAYATHPVL-------------SGGAIERIEN------SVIDELVVTDSIPLSEEAKKCDKIRVL--SVAPLLA 292 (309)
T ss_pred cCCCEEEEEEEeeeC-------------ChHHHHHHhc------CCCCEEEEecCcccchhhccCCCeEEE--EcHHHHH
Confidence 999999887753211 1112233433 479999999864311110000111122 5688999
Q ss_pred HHHhcC
Q 023987 174 QRLHQL 179 (274)
Q Consensus 174 ~~l~~~ 179 (274)
+.|.+.
T Consensus 293 ~~i~~~ 298 (309)
T PRK01259 293 EAIRRI 298 (309)
T ss_pred HHHHHH
Confidence 999765
No 88
>COG0462 PrsA Phosphoribosylpyrophosphate synthetase [Nucleotide transport and metabolism / Amino acid transport and metabolism]
Probab=96.43 E-value=0.13 Score=47.31 Aligned_cols=136 Identities=14% Similarity=0.108 Sum_probs=90.3
Q ss_pred cEEEEe-cCCcHHHHHHHHHHcCCcceeeeeEeee-CCCcceEEEeecCCCCCCeEEEEEecCCc-hhHHHHHHHHHhcc
Q 023987 16 QVHLFY-CVECEELARKVAAQSDLITLQSINWRNF-ADGWPNLYINSAHDIRGQHVAFLASFSSP-GVIFEQISVIYALP 92 (274)
Q Consensus 16 ~~~i~~-~~~~~~la~~ia~~lg~~~~~~~~~~~F-~dGE~~~~v~~~~~v~g~~V~iiqs~~~~-~~l~elll~~~a~r 92 (274)
+++++| -.+.-..|+.+|+.|| .++.-++-+|- .+.+.++ ..+..+|+||+++|+..+-+- ..+. ..+++|+
T Consensus 164 d~vVVSPD~Ggv~RAr~~A~~L~-~~~a~i~K~R~~~~~~v~~-~~~~gdV~gk~~iiVDDiIdTgGTi~---~Aa~~Lk 238 (314)
T COG0462 164 DPVVVSPDKGGVKRARALADRLG-APLAIIDKRRDSSPNVVEV-MNLIGDVEGKDVVIVDDIIDTGGTIA---KAAKALK 238 (314)
T ss_pred CcEEECCCccHHHHHHHHHHHhC-CCEEEEEEeecCCCCeEEE-eecccccCCCEEEEEeccccccHHHH---HHHHHHH
Confidence 455555 3456799999999997 88877777775 4454332 335679999999999976443 3443 4677899
Q ss_pred ccCCceEEEEeecCCCCCccccccCCCcccHHHHHHHHhcCCCCCCCCCEEEEEeC--CchhhhcccCCCCcccccchHH
Q 023987 93 RLFVASFTLVLPFFPTGSFERMEEEGDVATAFTMARILSNIPTSRGGPTSLVIYDI--HALQERFYFSDHVLPLFETGIP 170 (274)
Q Consensus 93 ~~~a~~i~~viPY~~ysRqdr~~~~g~~~~a~~~a~ll~~~~~~~~g~d~ii~vdl--H~~~~~~ff~~~~~~l~~~~~~ 170 (274)
+.||++|.++.-.-=++ ....+.+++ ..++.|++-|- |. ..+-+ . .+..+ +.++
T Consensus 239 ~~GAk~V~a~~tH~vfs--------------~~a~~~l~~-----~~i~~vivTnTi~~~-~~~~~-~-~~~~i--sva~ 294 (314)
T COG0462 239 ERGAKKVYAAATHGVFS--------------GAALERLEA-----SAIDEVIVTDTIPLP-EKKKI-P-KVSVI--SVAP 294 (314)
T ss_pred HCCCCeEEEEEEchhhC--------------hHHHHHHhc-----CCCCEEEEeCCcccc-ccccc-C-ceEEE--EhHH
Confidence 99999999887653333 234466664 24899999873 33 21111 1 12223 6799
Q ss_pred HHHHHHhcCC
Q 023987 171 LLKQRLHQLP 180 (274)
Q Consensus 171 ~la~~l~~~~ 180 (274)
++|+.|.+..
T Consensus 295 liaeaI~ri~ 304 (314)
T COG0462 295 LIAEAIRRIH 304 (314)
T ss_pred HHHHHHHHHH
Confidence 9999998753
No 89
>PRK15423 hypoxanthine phosphoribosyltransferase; Provisional
Probab=96.38 E-value=0.096 Score=44.47 Aligned_cols=104 Identities=13% Similarity=0.120 Sum_probs=67.8
Q ss_pred hhHHHhhCC-CCcEEEEe-cCCcHHHHHHHHHHcCCcc--eeeeeEeeeCC-----CcceEEEeecCCCCCCeEEEEEec
Q 023987 5 REIKAKKSQ-KKQVHLFY-CVECEELARKVAAQSDLIT--LQSINWRNFAD-----GWPNLYINSAHDIRGQHVAFLASF 75 (274)
Q Consensus 5 ~~~~~~~~~-~~~~~i~~-~~~~~~la~~ia~~lg~~~--~~~~~~~~F~d-----GE~~~~v~~~~~v~g~~V~iiqs~ 75 (274)
.|+.+.... +++..+++ .+.+-.+|..+++.|+ .+ +.-+....|.| |+..+.-.++.+++|++|+||...
T Consensus 23 ~~I~~~~~~~~~~~vvvgI~~Gg~~fa~~L~~~L~-~~~~v~~l~~ssY~~~~~~~~~v~i~~~~~~~v~gk~VLlVDDI 101 (178)
T PRK15423 23 RQITERYKDSGSDMVLVGLLRGSFMFMADLCREVQ-VSHEVDFMTASSYGSGMSTTRDVKILKDLDEDIRGKDVLIVEDI 101 (178)
T ss_pred HHHHHHhcccCCCeEEEEEecCChHHHHHHHHHhC-CCcceeEEEEEEecCCCcccCceEEecCCCCCCCCCEEEEEeee
Confidence 445444442 23344444 6889999999999996 76 45778888874 333232224568999999999988
Q ss_pred CCchhHHHHHHHHHhccccCCceEE-EEeecCCCCCc
Q 023987 76 SSPGVIFEQISVIYALPRLFVASFT-LVLPFFPTGSF 111 (274)
Q Consensus 76 ~~~~~l~elll~~~a~r~~~a~~i~-~viPY~~ysRq 111 (274)
.+....|. .+++.++..+++++. +++-+-+-.|+
T Consensus 102 iDTG~TL~--~l~~~l~~~~~~~v~~avL~~K~~~r~ 136 (178)
T PRK15423 102 IDSGNTLS--KVREILSLREPKSLAICTLLDKPSRRE 136 (178)
T ss_pred cCchHHHH--HHHHHHHhCCCCEEEEEEEEECCCCCc
Confidence 76644443 445557777888885 45544555454
No 90
>PRK02269 ribose-phosphate pyrophosphokinase; Provisional
Probab=96.35 E-value=0.21 Score=46.27 Aligned_cols=140 Identities=15% Similarity=0.068 Sum_probs=87.7
Q ss_pred CcEEEEecCCcHHHHHHHHHHcCCcceeeeeEeeeCC-CcceEEEeecCCCCCCeEEEEEecCCchhHHHHHHHHHhccc
Q 023987 15 KQVHLFYCVECEELARKVAAQSDLITLQSINWRNFAD-GWPNLYINSAHDIRGQHVAFLASFSSPGVIFEQISVIYALPR 93 (274)
Q Consensus 15 ~~~~i~~~~~~~~la~~ia~~lg~~~~~~~~~~~F~d-GE~~~~v~~~~~v~g~~V~iiqs~~~~~~l~elll~~~a~r~ 93 (274)
..+.+=.-.+....|+.+|+.|| .++.-+.-++-.+ +.......+..+++|++|+||..+.+-..- +...++.|++
T Consensus 166 ~~vvVsPd~G~~~~A~~lA~~lg-~~~~~~~k~r~~~~~~~~~~~~~~gdv~Gr~viIVDDIidTG~T--l~~aa~~Lk~ 242 (320)
T PRK02269 166 DVVVVSPDHGGVTRARKLAQFLK-TPIAIIDKRRSVDKMNTSEVMNIIGNVKGKKCILIDDMIDTAGT--ICHAADALAE 242 (320)
T ss_pred CcEEEEECccHHHHHHHHHHHhC-CCEEEEEecccCCCCceeEEEEeccccCCCEEEEEeeecCcHHH--HHHHHHHHHH
Confidence 33433335678899999999997 8876444333222 111222345578999999999987665332 2346788999
Q ss_pred cCCceEEEEeecCCCCCccccccCCCcccHHHHHHHHhcCCCCCCCCCEEEEEeCCchhhhcccCCCCcccccchHHHHH
Q 023987 94 LFVASFTLVLPFFPTGSFERMEEEGDVATAFTMARILSNIPTSRGGPTSLVIYDIHALQERFYFSDHVLPLFETGIPLLK 173 (274)
Q Consensus 94 ~~a~~i~~viPY~~ysRqdr~~~~g~~~~a~~~a~ll~~~~~~~~g~d~ii~vdlH~~~~~~ff~~~~~~l~~~~~~~la 173 (274)
.||++|.++.-+.=++. ..+-++.+ +|+++|++-|-+....... ...+..+ +.++++|
T Consensus 243 ~GA~~V~~~~tHglf~~-------------~a~~~l~~------~~i~~iv~Tdti~~~~~~~-~~k~~~i--sva~~la 300 (320)
T PRK02269 243 AGATEVYASCTHPVLSG-------------PALDNIQK------SAIEKLVVLDTIYLPEERL-IDKIEQI--SIADLLG 300 (320)
T ss_pred CCCCEEEEEEECcccCc-------------hHHHHHHh------CCCCEEEEeCCCCCccccc-cCCeEEE--EhHHHHH
Confidence 99999998877643322 23334444 4899999999652111111 1112222 5789999
Q ss_pred HHHhcC
Q 023987 174 QRLHQL 179 (274)
Q Consensus 174 ~~l~~~ 179 (274)
+.|.+.
T Consensus 301 ~~i~~~ 306 (320)
T PRK02269 301 EAIIRI 306 (320)
T ss_pred HHHHHH
Confidence 999775
No 91
>PLN02369 ribose-phosphate pyrophosphokinase
Probab=96.26 E-value=0.36 Score=44.41 Aligned_cols=139 Identities=15% Similarity=0.131 Sum_probs=88.7
Q ss_pred CcEEEEe-cCCcHHHHHHHHHHcCCcceeeeeEeeeCCCcceEEEeecCCCCCCeEEEEEecCCc-hhHHHHHHHHHhcc
Q 023987 15 KQVHLFY-CVECEELARKVAAQSDLITLQSINWRNFADGWPNLYINSAHDIRGQHVAFLASFSSP-GVIFEQISVIYALP 92 (274)
Q Consensus 15 ~~~~i~~-~~~~~~la~~ia~~lg~~~~~~~~~~~F~dGE~~~~v~~~~~v~g~~V~iiqs~~~~-~~l~elll~~~a~r 92 (274)
.++++++ -.+...+|+.+++.|++.++.-+.-.+..++.. ....+..++.|++|+|+..+.+- ..++ ..+++++
T Consensus 151 ~~~vvVspd~gg~~~a~~~a~~l~~~~~~~l~k~R~~~~~~-~~~~~~~~v~g~~viivDDii~TG~Tl~---~a~~~l~ 226 (302)
T PLN02369 151 PDLVVVSPDVGGVARARAFAKKLSDAPLAIVDKRRQGHNVA-EVMNLIGDVKGKVAIMVDDMIDTAGTIT---KGAALLH 226 (302)
T ss_pred CceEEEEECcChHHHHHHHHHHcCCCCEEEEEEecCCccee-eeEecCCCCCCCEEEEEcCcccchHHHH---HHHHHHH
Confidence 4566655 466779999999999337877766666444432 23356678999999999987654 3433 4567889
Q ss_pred ccCCceEEEEeecCCCCCccccccCCCcccHHHHHHHHhcCCCCCCCCCEEEEEeCCchhhhcccCCCCcccccchHHHH
Q 023987 93 RLFVASFTLVLPFFPTGSFERMEEEGDVATAFTMARILSNIPTSRGGPTSLVIYDIHALQERFYFSDHVLPLFETGIPLL 172 (274)
Q Consensus 93 ~~~a~~i~~viPY~~ysRqdr~~~~g~~~~a~~~a~ll~~~~~~~~g~d~ii~vdlH~~~~~~ff~~~~~~l~~~~~~~l 172 (274)
+.|++++.++....=.+. ..+-++.+ ++++.|++.|.+.......|+ .+..+ +.++++
T Consensus 227 ~~Ga~~v~~~~tH~v~~~-------------~a~~~l~~------~~~~~iv~t~ti~~~~~~~~~-~~~~~--~v~~~l 284 (302)
T PLN02369 227 QEGAREVYACATHAVFSP-------------PAIERLSS------GLFQEVIVTNTIPVSEKNYFP-QLTVL--SVANLL 284 (302)
T ss_pred hCCCCEEEEEEEeeeeCH-------------HHHHHHHh------CCCCEEEEeCCCCChhhcccC-CceEE--EHHHHH
Confidence 999999998874321111 12223333 378999999875421111122 22222 578899
Q ss_pred HHHHhcC
Q 023987 173 KQRLHQL 179 (274)
Q Consensus 173 a~~l~~~ 179 (274)
|+.|.+.
T Consensus 285 a~~i~~~ 291 (302)
T PLN02369 285 GETIWRV 291 (302)
T ss_pred HHHHHHH
Confidence 9999765
No 92
>PF15609 PRTase_2: Phosphoribosyl transferase
Probab=95.96 E-value=0.012 Score=50.31 Aligned_cols=39 Identities=18% Similarity=0.100 Sum_probs=33.5
Q ss_pred CCCeEEEEeccccchHHHHHHHHHHHhCCCcEEEEEEec
Q 023987 229 AGCHVVIVDDLVQSGGTLIECQVLSYLLPAVLLKMCVSE 267 (274)
Q Consensus 229 ~gk~vlIVDDIi~TG~Tl~~aa~~Lk~~GA~~V~~~~tH 267 (274)
..+.+++|||=+|||.|+..+++.|++.-+.+=++++|=
T Consensus 120 ~~~~lVLVDDEiSTG~T~lnli~al~~~~p~~~yvvasL 158 (191)
T PF15609_consen 120 NARTLVLVDDEISTGNTFLNLIRALHAKYPRKRYVVASL 158 (191)
T ss_pred CCCCEEEEecCccchHHHHHHHHHHHHhCCCceEEEEEE
Confidence 367999999999999999999999999877766666653
No 93
>PTZ00145 phosphoribosylpyrophosphate synthetase; Provisional
Probab=95.76 E-value=0.48 Score=45.76 Aligned_cols=137 Identities=9% Similarity=0.004 Sum_probs=88.6
Q ss_pred cEEEEec-CCcHHHHHHHHHHcCC-----cceeeeeEeeeCCCcceEEEeecCCCCCCeEEEEEecCCc-hhHHHHHHHH
Q 023987 16 QVHLFYC-VECEELARKVAAQSDL-----ITLQSINWRNFADGWPNLYINSAHDIRGQHVAFLASFSSP-GVIFEQISVI 88 (274)
Q Consensus 16 ~~~i~~~-~~~~~la~~ia~~lg~-----~~~~~~~~~~F~dGE~~~~v~~~~~v~g~~V~iiqs~~~~-~~l~elll~~ 88 (274)
..++++- ..+...|+.+|+.|+. .++.-+.-.+..++|.+ ...+..+|.|++|+||..+.+- ..+. ..+
T Consensus 280 ~pVVVsPD~Ga~~RAr~~A~~L~~~~~~~~~~avl~K~R~~~~~v~-~~~lvgdV~Gk~vIIVDDIIdTG~Tl~---~aa 355 (439)
T PTZ00145 280 KPVIVSPDAGGVYRARKFQDGLNHRGISDCGIAMLIKQRTKPNEIE-KMDLVGNVYDSDVIIVDDMIDTSGTLC---EAA 355 (439)
T ss_pred ccEEEccCcchHHHHHHHHHHhccccccCCCEEEEEeecCCCCceE-EEeccCCCCCCEEEEEcceeCcHHHHH---HHH
Confidence 3445542 3456789999999951 35555555555666643 4555679999999999988765 3444 467
Q ss_pred HhccccCCceEEEEeecCCCCCccccccCCCcccHHHHHHHHhcCCCCCCCCCEEEEEeCCc--hhhhcccCCCCccccc
Q 023987 89 YALPRLFVASFTLVLPFFPTGSFERMEEEGDVATAFTMARILSNIPTSRGGPTSLVIYDIHA--LQERFYFSDHVLPLFE 166 (274)
Q Consensus 89 ~a~r~~~a~~i~~viPY~~ysRqdr~~~~g~~~~a~~~a~ll~~~~~~~~g~d~ii~vdlH~--~~~~~ff~~~~~~l~~ 166 (274)
..|++.||++|.++.-..=+ +...+.++.+ +|+++|++-|-.. ...... ..+..+
T Consensus 356 ~~Lk~~GA~~V~~~~THglf-------------s~~A~~rl~~------s~i~~IvvTdTIp~~~~~~~~--~k~~vi-- 412 (439)
T PTZ00145 356 KQLKKHGARRVFAFATHGLF-------------SGPAIERIEA------SPLEEVVVTDTVKSNKNIDSC--KKITKL-- 412 (439)
T ss_pred HHHHHcCCCEEEEEEEcccC-------------ChhHHHHHhc------CCCCEEEEeCCCcCchhhccc--CCeEEE--
Confidence 78899999999988765433 2334456644 4899999999642 211110 011122
Q ss_pred chHHHHHHHHhcC
Q 023987 167 TGIPLLKQRLHQL 179 (274)
Q Consensus 167 ~~~~~la~~l~~~ 179 (274)
+.++++|+.|...
T Consensus 413 sVA~llAeaI~~i 425 (439)
T PTZ00145 413 SVSVLVADAIRRI 425 (439)
T ss_pred EhHHHHHHHHHHH
Confidence 5689999999775
No 94
>PRK02812 ribose-phosphate pyrophosphokinase; Provisional
Probab=95.65 E-value=0.92 Score=42.30 Aligned_cols=139 Identities=14% Similarity=0.128 Sum_probs=89.1
Q ss_pred CcEEEEe-cCCcHHHHHHHHHHcCCcceeeeeEeeeCCCcceEEEeecCCCCCCeEEEEEecCCchhHHHHHHHHHhccc
Q 023987 15 KQVHLFY-CVECEELARKVAAQSDLITLQSINWRNFADGWPNLYINSAHDIRGQHVAFLASFSSPGVIFEQISVIYALPR 93 (274)
Q Consensus 15 ~~~~i~~-~~~~~~la~~ia~~lg~~~~~~~~~~~F~dGE~~~~v~~~~~v~g~~V~iiqs~~~~~~l~elll~~~a~r~ 93 (274)
.+++|++ -.+...+|+.+|+.|++.+..-+.-++-.+++. ....+..++.|++|+|+..+.+....| ...++.+++
T Consensus 179 ~~~vvVsPD~gg~~ra~~~A~~L~~~~~~~~~k~R~~~~~~-~~~~~~~~v~g~~viiVDDii~TG~T~--~~a~~~L~~ 255 (330)
T PRK02812 179 EDIVVVSPDVGGVARARAFAKKLNDAPLAIIDKRRQAHNVA-EVLNVIGDVKGKTAILVDDMIDTGGTI--CEGARLLRK 255 (330)
T ss_pred CCeEEEEECCccHHHHHHHHHHhCCCCEEEEEeeccCCcee-eeEeccccCCCCEEEEEccccCcHHHH--HHHHHHHhc
Confidence 4566655 455779999999999536777666555544432 234455689999999999876553322 245688999
Q ss_pred cCCceEEEEeecCCCCCccccccCCCcccHHHHHHHHhcCCCCCCCCCEEEEEeCCchh-hhcccCCCCcccccchHHHH
Q 023987 94 LFVASFTLVLPFFPTGSFERMEEEGDVATAFTMARILSNIPTSRGGPTSLVIYDIHALQ-ERFYFSDHVLPLFETGIPLL 172 (274)
Q Consensus 94 ~~a~~i~~viPY~~ysRqdr~~~~g~~~~a~~~a~ll~~~~~~~~g~d~ii~vdlH~~~-~~~ff~~~~~~l~~~~~~~l 172 (274)
.|+++|.++....=. +...+.++.+ .++|+|++.|.+..- ...| + .+..+ +.++++
T Consensus 256 ~Ga~~v~~~~tH~v~-------------s~~a~~~l~~------~~id~iv~tnti~~~~~~~~-~-~~~~~--~va~ll 312 (330)
T PRK02812 256 EGAKQVYACATHAVF-------------SPPAIERLSS------GLFEEVIVTNTIPVPEERRF-P-QLKVL--SVANML 312 (330)
T ss_pred cCCCeEEEEEEcccC-------------ChHHHHHHhh------CCCCEEEEeCCCCChhhccc-C-CceEE--EHHHHH
Confidence 999999988843211 1223334443 379999999976421 1112 2 12222 568899
Q ss_pred HHHHhcC
Q 023987 173 KQRLHQL 179 (274)
Q Consensus 173 a~~l~~~ 179 (274)
|+.|.+.
T Consensus 313 a~~i~~~ 319 (330)
T PRK02812 313 GEAIWRI 319 (330)
T ss_pred HHHHHHH
Confidence 9998764
No 95
>PRK09162 hypoxanthine-guanine phosphoribosyltransferase; Provisional
Probab=95.57 E-value=0.26 Score=41.82 Aligned_cols=87 Identities=9% Similarity=0.106 Sum_probs=58.5
Q ss_pred cEEEEecCCcHHHHHHHHHHcCCcce--eeeeEeeeCCCcc--eEE--EeecCCCCCCeEEEEEecCCchhHHHHHHHHH
Q 023987 16 QVHLFYCVECEELARKVAAQSDLITL--QSINWRNFADGWP--NLY--INSAHDIRGQHVAFLASFSSPGVIFEQISVIY 89 (274)
Q Consensus 16 ~~~i~~~~~~~~la~~ia~~lg~~~~--~~~~~~~F~dGE~--~~~--v~~~~~v~g~~V~iiqs~~~~~~l~elll~~~ 89 (274)
.+.|=..++...+|..+|+.|| +++ .-+...++.+++. ++. .....+++|++|+||....+....++ ..++
T Consensus 42 ~viV~i~~gg~~~A~~La~~l~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~gk~VLIVDDIidTG~Tl~--~~~~ 118 (181)
T PRK09162 42 PLVLCVMGGGLVFTGQLLPRLD-FPLEFDYLHATRYRNETTGGELVWKVKPRESLKGRTVLVVDDILDEGHTLA--AIRD 118 (181)
T ss_pred eEEEEECCCcHHHHHHHHHHcC-CCcccCEEEEEecCCCccCCceeEecCCCCCCCCCEEEEEccccCcHHHHH--HHHH
Confidence 3444336888899999999996 874 3455566655432 122 22345789999999988766544443 4566
Q ss_pred hccccCCceEEEEeec
Q 023987 90 ALPRLFVASFTLVLPF 105 (274)
Q Consensus 90 a~r~~~a~~i~~viPY 105 (274)
.|++.|+++|.++.-+
T Consensus 119 ~Lk~~Ga~~V~~avL~ 134 (181)
T PRK09162 119 RCLEMGAAEVYSAVLV 134 (181)
T ss_pred HHHhCCCCEEEEEEEE
Confidence 6788899999876544
No 96
>PF13793 Pribosyltran_N: N-terminal domain of ribose phosphate pyrophosphokinase; PDB: 2JI4_A 1DKU_B 1IBS_B 1DKR_B 3MBI_C 3LRT_B 3LPN_B 3NAG_B 2H07_B 2H06_B ....
Probab=95.43 E-value=0.35 Score=38.16 Aligned_cols=78 Identities=10% Similarity=0.018 Sum_probs=48.3
Q ss_pred CCChHHHHHHhhc--CCCeEEEEEEEeCCceEEEeeeCCCCCCeEEEEeccccc-hHH---HHHHHHHHHhCCCcEEEEE
Q 023987 191 DDGAWKRFHKMLD--HFPTVVCAKVREGDKRIVRIKEGNPAGCHVVIVDDLVQS-GGT---LIECQVLSYLLPAVLLKMC 264 (274)
Q Consensus 191 d~G~~~ra~~~a~--~~~~~~~~k~R~~~~~i~~~~~~~v~gk~vlIVDDIi~T-G~T---l~~aa~~Lk~~GA~~V~~~ 264 (274)
..+.-..|+.+++ +.++..+.-.|-.+++....+.++++|++|+||=++... -.. +.-.++.+|+.||++|.++
T Consensus 6 g~~~~~La~~ia~~L~~~~~~~~~~~F~dGE~~v~i~~~v~g~dv~iiqs~~~~~nd~lmeLll~i~a~r~~~a~~i~~V 85 (116)
T PF13793_consen 6 GSSSQDLAERIAEALGIPLGKVETKRFPDGETYVRIPESVRGKDVFIIQSTSPPVNDNLMELLLLIDALRRAGAKRITLV 85 (116)
T ss_dssp SSSGHHHHHHHHHHTTS-EE-EEEEE-TTS-EEEEESS--TTSEEEEE---SSSHHHHHHHHHHHHHHHHHTTBSEEEEE
T ss_pred CCCCHHHHHHHHHHhCCceeeeEEEEcCCCCEEEEecccccCCceEEEEecCCchhHHHHHHHHHHHHHHHcCCcEEEEe
Confidence 3445566666665 445555555666777765566789999999999999875 233 3457799999999999988
Q ss_pred Eece
Q 023987 265 VSEF 268 (274)
Q Consensus 265 ~tH~ 268 (274)
..+.
T Consensus 86 iPYl 89 (116)
T PF13793_consen 86 IPYL 89 (116)
T ss_dssp ESS-
T ss_pred ccch
Confidence 7553
No 97
>TIGR01203 HGPRTase hypoxanthine phosphoribosyltransferase. Sequence differences as small as a single residue can affect whether members of this family act on hypoxanthine and guanine or hypoxanthine only. The designation of this model as equivalog reflects hypoxanthine specificity and does not reflect whether or not guanine can replace hypoxanthine.
Probab=95.25 E-value=0.44 Score=39.82 Aligned_cols=96 Identities=10% Similarity=0.116 Sum_probs=61.5
Q ss_pred hhHHHhhCCCCcEEEEe-cCCcHHHHHHHHHHcCCcc--eeeeeEeeeCCC-----cceEEEeecCCCCCCeEEEEEecC
Q 023987 5 REIKAKKSQKKQVHLFY-CVECEELARKVAAQSDLIT--LQSINWRNFADG-----WPNLYINSAHDIRGQHVAFLASFS 76 (274)
Q Consensus 5 ~~~~~~~~~~~~~~i~~-~~~~~~la~~ia~~lg~~~--~~~~~~~~F~dG-----E~~~~v~~~~~v~g~~V~iiqs~~ 76 (274)
+|+....+. .+..+++ ..+.-.+|..+++.|| .+ +..+....|.|+ +..+...++.++.|++|+|+..+.
T Consensus 17 ~~I~~~~~~-~~~vvv~i~~GG~~~a~~l~~~L~-~~~~v~~i~~~~Y~~~~~~~~~~~~~~~~~~~~~gk~vlivDDii 94 (166)
T TIGR01203 17 KQITEDYAG-KPLVLLCVLKGSFPFFADLIRYIA-VPVQVDFMAVSSYGNGMQSSGDVKILKDLDLSIKGKDVLIVEDIV 94 (166)
T ss_pred HHHHHHcCC-CCeEEEEEccCCHHHHHHHHHhcC-CCceeeEEEEeeccCCCcccCceEEecCCCCCCCCCEEEEEeeee
Confidence 344433322 3444444 6788899999999996 65 556666666544 222223356688999999999876
Q ss_pred Cc-hhHHHHHHHHHhccccCCceEEEEeec
Q 023987 77 SP-GVIFEQISVIYALPRLFVASFTLVLPF 105 (274)
Q Consensus 77 ~~-~~l~elll~~~a~r~~~a~~i~~viPY 105 (274)
+. ..+.+ .+++|+..|+++|.++.-+
T Consensus 95 ~TG~Tl~~---~~~~l~~~g~~~i~~~~l~ 121 (166)
T TIGR01203 95 DTGLTLQY---LLDLLKARKPKSLKIVTLL 121 (166)
T ss_pred CcHHHHHH---HHHHHHHCCCCEEEEEEEE
Confidence 65 34444 4456677788888665433
No 98
>PRK06827 phosphoribosylpyrophosphate synthetase; Provisional
Probab=95.03 E-value=0.77 Score=43.65 Aligned_cols=141 Identities=11% Similarity=0.008 Sum_probs=86.0
Q ss_pred cEEEEe-cCCcHHHHHHHHHHcCCcceeeeeEeeeCCCcce-----EEEeecC-CCCCCeEEEEEecCCchhHHHHHHHH
Q 023987 16 QVHLFY-CVECEELARKVAAQSDLITLQSINWRNFADGWPN-----LYINSAH-DIRGQHVAFLASFSSPGVIFEQISVI 88 (274)
Q Consensus 16 ~~~i~~-~~~~~~la~~ia~~lg~~~~~~~~~~~F~dGE~~-----~~v~~~~-~v~g~~V~iiqs~~~~~~l~elll~~ 88 (274)
+.+|++ -.+.-..|+.+|..|| .++.-+.-.+..+++.+ +...+.. ++.|++|+|+..+.+-..- +...+
T Consensus 208 ~~VVVsPD~Gg~~rA~~~A~~Lg-~~~ai~~K~R~~~~~~~g~~~~~~~~~~g~dV~gr~vIIVDDII~TG~T--l~~aa 284 (382)
T PRK06827 208 HLMVISPDTGAMDRAKYYASVLG-VDLGLFYKRRDYSRVVNGRNPIVAHEFLGRDVEGKDVLIVDDMIASGGS--MIDAA 284 (382)
T ss_pred CcEEEEECccchHHHHHHHHHhC-CCEEEEEcccCCcccccCCCceEEEecCCcccCCCEEEEEeCCcCcHHH--HHHHH
Confidence 444544 4556789999999997 88876665543322211 2233334 8999999999987665322 23567
Q ss_pred HhccccCCceEEEEeecCCCCCccccccCCCcccHHHHHHHHhcCCCCCCCCCEEEEEeCC--chhhhcccCCCCccccc
Q 023987 89 YALPRLFVASFTLVLPFFPTGSFERMEEEGDVATAFTMARILSNIPTSRGGPTSLVIYDIH--ALQERFYFSDHVLPLFE 166 (274)
Q Consensus 89 ~a~r~~~a~~i~~viPY~~ysRqdr~~~~g~~~~a~~~a~ll~~~~~~~~g~d~ii~vdlH--~~~~~~ff~~~~~~l~~ 166 (274)
+.|++.||++|.++....-++ . .+-++.+..+ ..++++|++-|-+ ....... ..+..+
T Consensus 285 ~~Lk~~GA~~V~~~~tH~vf~-~-------------a~~~l~~~~~--~g~i~~iv~TdTi~~~~~~~~~--~~~~~i-- 344 (382)
T PRK06827 285 KELKSRGAKKIIVAATFGFFT-N-------------GLEKFDKAYE--EGYFDRIIGTNLVYHPEELLSK--PWYIEV-- 344 (382)
T ss_pred HHHHHcCCCEEEEEEEeecCh-H-------------HHHHHHhhcc--cCCCCEEEEeCCCcCchhhccc--CCeEEE--
Confidence 888899999999887764443 1 2333333211 1248999998853 3221110 011122
Q ss_pred chHHHHHHHHhcC
Q 023987 167 TGIPLLKQRLHQL 179 (274)
Q Consensus 167 ~~~~~la~~l~~~ 179 (274)
+.++++|+.|...
T Consensus 345 sva~llA~~I~~~ 357 (382)
T PRK06827 345 DMSKLIARIIDAL 357 (382)
T ss_pred EcHHHHHHHHHHH
Confidence 5689999999764
No 99
>PTZ00271 hypoxanthine-guanine phosphoribosyltransferase; Provisional
Probab=94.26 E-value=0.91 Score=39.61 Aligned_cols=94 Identities=12% Similarity=0.167 Sum_probs=60.4
Q ss_pred CcEEEEe-cCCcHHHHHHHHHHcC--Cc--ceeeeeEeeeCCC-----cceEEEeecCCCCCCeEEEEEecCCchhHHHH
Q 023987 15 KQVHLFY-CVECEELARKVAAQSD--LI--TLQSINWRNFADG-----WPNLYINSAHDIRGQHVAFLASFSSPGVIFEQ 84 (274)
Q Consensus 15 ~~~~i~~-~~~~~~la~~ia~~lg--~~--~~~~~~~~~F~dG-----E~~~~v~~~~~v~g~~V~iiqs~~~~~~l~el 84 (274)
+++.+++ .++.-.+|..+++.|+ ++ ++..+.+..|.|| +..+...++.+++|++|+||...-+....|.
T Consensus 57 ~~~vivgVlkGg~~fa~dL~r~L~~~~~~~~vdfi~vssY~~~~~s~g~~~i~~~~~~~i~gk~VLIVDDIvDTG~TL~- 135 (211)
T PTZ00271 57 NPLYLLCVLKGSFIFTADLARFLADEGVPVKVEFICASSYGTGVETSGQVRMLLDVRDSVENRHILIVEDIVDSAITLQ- 135 (211)
T ss_pred CCeEEEEEcCCCHHHHHHHHHHhcccCCCeeEEEEEEEecCCCCcccCceEEecCCCCCCCCCEEEEEecccCCHHHHH-
Confidence 3554444 7889999999999984 13 4677888888764 2223334567899999999998766533322
Q ss_pred HHHHHhccccCCceEE-EEeecCCCCC
Q 023987 85 ISVIYALPRLFVASFT-LVLPFFPTGS 110 (274)
Q Consensus 85 ll~~~a~r~~~a~~i~-~viPY~~ysR 110 (274)
.+++.|++.+++++. +++=+-+-.|
T Consensus 136 -~v~~~l~~~~p~svk~avL~dK~~~r 161 (211)
T PTZ00271 136 -YLMRFMLAKKPASLKTVVLLDKPSGR 161 (211)
T ss_pred -HHHHHHHhcCCCEEEEEEEEEcccCC
Confidence 334455555777874 4554444433
No 100
>PLN02238 hypoxanthine phosphoribosyltransferase
Probab=94.17 E-value=1.2 Score=38.01 Aligned_cols=86 Identities=13% Similarity=0.148 Sum_probs=57.0
Q ss_pred EEEEe-cCCcHHHHHHHHHHcCCc---ce--eeeeEeeeCCC-----cceEEE-eecCCCCCCeEEEEEecCCchhHHHH
Q 023987 17 VHLFY-CVECEELARKVAAQSDLI---TL--QSINWRNFADG-----WPNLYI-NSAHDIRGQHVAFLASFSSPGVIFEQ 84 (274)
Q Consensus 17 ~~i~~-~~~~~~la~~ia~~lg~~---~~--~~~~~~~F~dG-----E~~~~v-~~~~~v~g~~V~iiqs~~~~~~l~el 84 (274)
..|++ .+..-.+|..+++.|+ . ++ .-+....|.+| +..+.. .+..+++|++|+||....+.-..|.
T Consensus 37 ~vivgi~~Gg~~fa~~L~~~L~-~~~~~~~i~fi~~~sy~~~~~~~g~~~i~~~~~~~~v~gk~VliVDDIidTG~Tl~- 114 (189)
T PLN02238 37 PVVLGVATGAFMFLADLVRAIQ-PLPRGLTVDFIRASSYGGGTESSGVAKVSGADLKIDVKGKHVLLVEDIVDTGNTLS- 114 (189)
T ss_pred cEEEEEccCCHHHHHHHHHHhC-ccCCCeEEEEEEeeecCCCccccCceeEecCCCCCCCCCCEEEEEecccchHHHHH-
Confidence 44444 6778899999999996 6 33 45666777653 322222 3345799999999998765533322
Q ss_pred HHHHHhccccCCceEEEEeec
Q 023987 85 ISVIYALPRLFVASFTLVLPF 105 (274)
Q Consensus 85 ll~~~a~r~~~a~~i~~viPY 105 (274)
.+++.+++.|++++.++.-+
T Consensus 115 -~~~~~l~~~g~~~v~~avL~ 134 (189)
T PLN02238 115 -ALVAHLEAKGAASVSVCALL 134 (189)
T ss_pred -HHHHHHHhCCCCEEEEEEEE
Confidence 34567788899998765433
No 101
>COG0634 Hpt Hypoxanthine-guanine phosphoribosyltransferase [Nucleotide transport and metabolism]
Probab=93.01 E-value=1.9 Score=36.45 Aligned_cols=88 Identities=13% Similarity=0.142 Sum_probs=57.7
Q ss_pred CCCcEEEEecCCcHHHHHHHHHHcCCcc--eeeeeEeeeCCC-----cceEEEeecCCCCCCeEEEEEecCCchhHHHHH
Q 023987 13 QKKQVHLFYCVECEELARKVAAQSDLIT--LQSINWRNFADG-----WPNLYINSAHDIRGQHVAFLASFSSPGVIFEQI 85 (274)
Q Consensus 13 ~~~~~~i~~~~~~~~la~~ia~~lg~~~--~~~~~~~~F~dG-----E~~~~v~~~~~v~g~~V~iiqs~~~~~~l~ell 85 (274)
.+..+++=-...+-.++..++.++. ++ +.-+.+..|.+| +..+.-.+.++++|+||++|...-+....|.
T Consensus 34 g~~~~vv~iLkGs~~F~~dL~r~i~-~~~e~dFm~vSSYg~~t~ssg~v~i~kDld~di~grdVLiVeDIiDsG~TLs-- 110 (178)
T COG0634 34 GKDPLVVGVLKGSFPFMADLIRAID-FPLEVDFMHVSSYGGGTSSSGEVKILKDLDEDIKGRDVLIVEDIIDSGLTLS-- 110 (178)
T ss_pred CCceEEEEEcccchhhHHHHHHhcC-CCceeEEEEEeccCCCcccCCceEEecccccCCCCCeEEEEecccccChhHH--
Confidence 3344444336888888888888884 65 467788888665 3222223578999999999997655433222
Q ss_pred HHHHhccccCCceEEEEe
Q 023987 86 SVIYALPRLFVASFTLVL 103 (274)
Q Consensus 86 l~~~a~r~~~a~~i~~vi 103 (274)
.+.+-|+..+|+++.++.
T Consensus 111 ~i~~~l~~r~a~sv~i~t 128 (178)
T COG0634 111 KVRDLLKERGAKSVRIAT 128 (178)
T ss_pred HHHHHHHhCCCCeEEEEE
Confidence 334455667888887654
No 102
>PRK00553 ribose-phosphate pyrophosphokinase; Provisional
Probab=92.96 E-value=1.5 Score=40.99 Aligned_cols=84 Identities=13% Similarity=-0.039 Sum_probs=58.8
Q ss_pred CeEEEecCCChHHHHHHhhc--CCCeEEEEEEEeCCceEEEeeeCCCCCCeEEEEeccccc-hHH---HHHHHHHHHhCC
Q 023987 184 NIVIAFPDDGAWKRFHKMLD--HFPTVVCAKVREGDKRIVRIKEGNPAGCHVVIVDDLVQS-GGT---LIECQVLSYLLP 257 (274)
Q Consensus 184 ~~viV~pd~G~~~ra~~~a~--~~~~~~~~k~R~~~~~i~~~~~~~v~gk~vlIVDDIi~T-G~T---l~~aa~~Lk~~G 257 (274)
+..+++ ..+....|..+++ +.++.-+...|-.+++....+..+++|++|+||=++.+. ..- +.-.+..||++|
T Consensus 9 ~~~i~~-~~~~~~La~~ia~~lg~~l~~~~~~~FpdGE~~v~i~~~vrg~dV~ivqs~~~p~nd~l~eLll~~~alr~~~ 87 (332)
T PRK00553 9 NHVIFS-LSKAKKLVDSICRKLSMKPGEIVIQKFADGETYIRFDESVRNKDVVIFQSTCSPVNDSLMELLIAIDALKRGS 87 (332)
T ss_pred CeEEEE-CCCCHHHHHHHHHHhCCceeeeEEEECCCCCEEEEECCCCCCCEEEEEcCCCCCCchHHHHHHHHHHHHHHcC
Confidence 334333 3456667777775 556666667777778776566788999999999886543 223 345778999999
Q ss_pred CcEEEEEEece
Q 023987 258 AVLLKMCVSEF 268 (274)
Q Consensus 258 A~~V~~~~tH~ 268 (274)
|++|.++.-+.
T Consensus 88 a~~i~~ViPYl 98 (332)
T PRK00553 88 AKSITAILPYY 98 (332)
T ss_pred CCeEEEEeecc
Confidence 99998877654
No 103
>PRK00129 upp uracil phosphoribosyltransferase; Reviewed
Probab=92.96 E-value=1.4 Score=38.20 Aligned_cols=87 Identities=11% Similarity=0.064 Sum_probs=61.2
Q ss_pred CcEEEEe-cCCcHHHHHHHHHHcCCcceeeeeEeeeCC--CcceEEEeecCCCCCCeEEEEEecCCc-hhHHHHHHHHHh
Q 023987 15 KQVHLFY-CVECEELARKVAAQSDLITLQSINWRNFAD--GWPNLYINSAHDIRGQHVAFLASFSSP-GVIFEQISVIYA 90 (274)
Q Consensus 15 ~~~~i~~-~~~~~~la~~ia~~lg~~~~~~~~~~~F~d--GE~~~~v~~~~~v~g~~V~iiqs~~~~-~~l~elll~~~a 90 (274)
+++++++ .++...++..+++.|+..+++.+...+... +....+.+++.++.|++|+++..+-.- ..+.. .++.
T Consensus 70 ~~~vvV~IlrgG~~~~~~l~~~l~~~~~~~i~~~r~~~t~~~~~~~~~lp~~i~~~~VllvDd~laTG~Tl~~---ai~~ 146 (209)
T PRK00129 70 KKLVIVPILRAGLGMVDGVLKLIPSARVGHIGLYRDEETLEPVEYYVKLPEDIDERTVIVVDPMLATGGSAIA---AIDL 146 (209)
T ss_pred CeEEEEEEeCCCHHHHHHHHHhCCcCeeeeEEEEeCCCCCCCEEEEeeCCCcCCCCEEEEECCcccchHHHHH---HHHH
Confidence 3466666 688999999999999756777776655422 122245667889999999999876544 34433 4556
Q ss_pred ccccCCceEEEEee
Q 023987 91 LPRLFVASFTLVLP 104 (274)
Q Consensus 91 ~r~~~a~~i~~viP 104 (274)
|++.|+++|.++.-
T Consensus 147 L~~~G~~~I~~~~l 160 (209)
T PRK00129 147 LKKRGAKNIKVLCL 160 (209)
T ss_pred HHHcCCCEEEEEEE
Confidence 67778999987765
No 104
>PLN02440 amidophosphoribosyltransferase
Probab=92.60 E-value=2.5 Score=41.45 Aligned_cols=125 Identities=14% Similarity=0.090 Sum_probs=74.3
Q ss_pred CCcEEEEecCCcHHHHHHHHHHcCCcceeee-eEeeeC------------CCcceEEEee-cCCCCCCeEEEEEecCCch
Q 023987 14 KKQVHLFYCVECEELARKVAAQSDLITLQSI-NWRNFA------------DGWPNLYINS-AHDIRGQHVAFLASFSSPG 79 (274)
Q Consensus 14 ~~~~~i~~~~~~~~la~~ia~~lg~~~~~~~-~~~~F~------------dGE~~~~v~~-~~~v~g~~V~iiqs~~~~~ 79 (274)
...+.+-.-.+...+|..+|+.+| +++... .-.++. ++....+... ...++|++|++|...-.--
T Consensus 275 ~~d~vvpVP~s~~~~A~~la~~lg-iP~~~~lvr~ry~~rt~i~~~q~~r~~~~~~k~~~~~~~v~gk~VlLVDDiittG 353 (479)
T PLN02440 275 DCDVVIPVPDSGRVAALGYAAKLG-VPFQQGLIRSHYVGRTFIEPSQKIRDFSVKLKLNPVRSVLEGKRVVVVDDSIVRG 353 (479)
T ss_pred CCCEEEEeCCcHHHHHHHHHHHhC-CCchhheEEEeeccccccCcchhhhhhhheeeeecccccccCceEEEEeceeCcH
Confidence 345555555667799999999997 987521 123332 1211222222 2458999999998654433
Q ss_pred hHHHHHHHHHhccccCCceEEEEeec--------CCCCCccccccCCCcccHHHHHHHHhcCCCCCCCCCEEEEEeCC
Q 023987 80 VIFEQISVIYALPRLFVASFTLVLPF--------FPTGSFERMEEEGDVATAFTMARILSNIPTSRGGPTSLVIYDIH 149 (274)
Q Consensus 80 ~l~elll~~~a~r~~~a~~i~~viPY--------~~ysRqdr~~~~g~~~~a~~~a~ll~~~~~~~~g~d~ii~vdlH 149 (274)
..+. .+++.|+++||++|.+++-- ++..=.||.+.-+--.+...+++.| |+|.+..+.+.
T Consensus 354 tTl~--~i~~~L~~aGa~~V~v~v~~p~~~~p~~~G~d~p~~~~li~~~~~~~ei~~~~--------~~dsl~~l~~~ 421 (479)
T PLN02440 354 TTSS--KIVRMLREAGAKEVHMRIASPPIIASCYYGVDTPSREELISNRMSVEEIRKFI--------GCDSLAFLPLE 421 (479)
T ss_pred HHHH--HHHHHHHhcCCCEEEEEEECCcccccceeeccCCCHHHHhhcCCCHHHHHHHh--------CCCEEEEecHH
Confidence 3333 36678889999998765442 2223334444323335566677666 57877776543
No 105
>PRK08525 amidophosphoribosyltransferase; Provisional
Probab=91.89 E-value=3.6 Score=39.97 Aligned_cols=101 Identities=14% Similarity=0.073 Sum_probs=60.1
Q ss_pred HHHhhCCCCcEEEEecCCcHHHHHHHHHHcCCcceeeeeEee-eC-----CCc-------ceEEEee-cCCCCCCeEEEE
Q 023987 7 IKAKKSQKKQVHLFYCVECEELARKVAAQSDLITLQSINWRN-FA-----DGW-------PNLYINS-AHDIRGQHVAFL 72 (274)
Q Consensus 7 ~~~~~~~~~~~~i~~~~~~~~la~~ia~~lg~~~~~~~~~~~-F~-----dGE-------~~~~v~~-~~~v~g~~V~ii 72 (274)
+.++......+.+-.-.+...+|..+|+.|| +++...-+++ +. +.+ ...++.. .+.+.|++|++|
T Consensus 268 La~~~~~~~d~Vv~vPd~g~~~A~~~A~~lg-ip~~~~l~rk~~~~r~~i~~~qr~rn~~~~~~~~~~~~~v~gK~VlLV 346 (445)
T PRK08525 268 LAKKFPIKADFVVPVPDSGVPAAIGYAQESG-IPFEMAIVRNHYVGRTFIEPTQEMRNLKVKLKLNPMSKVLEGKRIVVI 346 (445)
T ss_pred HHHHhcccCCeEEECCchHHHHHHHHHHHhC-CCccceEEEeeccccccCCHHHHHHhhheeEEecccccccCCCeEEEE
Confidence 3333333444544444445689999999997 8864222221 11 111 1122222 344889999999
Q ss_pred EecCCchhHHHHHHHHHhccccCCceEEEEeecCCCCC
Q 023987 73 ASFSSPGVIFEQISVIYALPRLFVASFTLVLPFFPTGS 110 (274)
Q Consensus 73 qs~~~~~~l~elll~~~a~r~~~a~~i~~viPY~~ysR 110 (274)
...-.--..|. .++..||+.||++|.+++..-+.+.
T Consensus 347 DDvitTG~Tl~--~a~~~Lr~aGA~~V~v~~~hp~~~~ 382 (445)
T PRK08525 347 DDSIVRGTTSK--KIVSLLRAAGAKEIHLRIACPEIKF 382 (445)
T ss_pred ecccCcHHHHH--HHHHHHHhcCCCEEEEEEECCCcCC
Confidence 86544333333 3678899999999998876655544
No 106
>TIGR01091 upp uracil phosphoribosyltransferase. that includes uracil phosphoribosyltransferase, uridine kinases, and other, uncharacterized proteins.
Probab=91.61 E-value=2.5 Score=36.54 Aligned_cols=87 Identities=11% Similarity=0.047 Sum_probs=61.8
Q ss_pred CcEEEEe-cCCcHHHHHHHHHHcCCcceeeeeEeeeCC-Cc-ceEEEeecCCCCCCeEEEEEecCCc-hhHHHHHHHHHh
Q 023987 15 KQVHLFY-CVECEELARKVAAQSDLITLQSINWRNFAD-GW-PNLYINSAHDIRGQHVAFLASFSSP-GVIFEQISVIYA 90 (274)
Q Consensus 15 ~~~~i~~-~~~~~~la~~ia~~lg~~~~~~~~~~~F~d-GE-~~~~v~~~~~v~g~~V~iiqs~~~~-~~l~elll~~~a 90 (274)
+++++++ ..+...++..+.+.++..+++.+...+... ++ ...+.++++++.|++|+++..+-.- ..++ ..++.
T Consensus 68 ~~i~~V~ILrgg~~~~~~l~~~l~~~~v~~i~~~r~~~t~~~~~~~~~lp~~i~~~~VllvDd~laTG~Tl~---~ai~~ 144 (207)
T TIGR01091 68 KKIVLVPILRAGLGMVDGVLKLIPEAKVGHVGAYRNEETLKPVPYYSKLPEDIDERTVIVLDPMLATGGTMI---AALDL 144 (207)
T ss_pred CcEEEEEEeCCcHHHHHHHHHhCCcCceeEEEEEeCCCCCCCEEEEecCCCCCCCCEEEEECCCccchHHHH---HHHHH
Confidence 3566666 688999999999999766777666654322 22 2245677889999999999876543 3443 35667
Q ss_pred ccccCCceEEEEee
Q 023987 91 LPRLFVASFTLVLP 104 (274)
Q Consensus 91 ~r~~~a~~i~~viP 104 (274)
+++.|+++|.++..
T Consensus 145 L~~~G~~~I~v~~l 158 (207)
T TIGR01091 145 LKKRGAKKIKVLSI 158 (207)
T ss_pred HHHcCCCEEEEEEE
Confidence 77789999887766
No 107
>PRK09123 amidophosphoribosyltransferase; Provisional
Probab=91.58 E-value=3.2 Score=40.74 Aligned_cols=121 Identities=14% Similarity=0.007 Sum_probs=70.4
Q ss_pred CcEEEEecCCcHHHHHHHHHHcCCcceeeeeE-eeeC----------CCcceEEEee---cCCCCCCeEEEEEecCCc-h
Q 023987 15 KQVHLFYCVECEELARKVAAQSDLITLQSINW-RNFA----------DGWPNLYINS---AHDIRGQHVAFLASFSSP-G 79 (274)
Q Consensus 15 ~~~~i~~~~~~~~la~~ia~~lg~~~~~~~~~-~~F~----------dGE~~~~v~~---~~~v~g~~V~iiqs~~~~-~ 79 (274)
.-+.+--..+...+|..+++.+| +++...-+ .+|. ..+..+++.. .+.+.|++|++|.....- .
T Consensus 296 ~D~Vv~VP~sg~~~A~~la~~lg-ip~~~~lir~~y~grt~i~~~q~~r~~~v~~k~~~~~~~~~gk~vvlvDD~i~tG~ 374 (479)
T PRK09123 296 ADVVVPVPDSGVPAAIGYAQESG-IPFELGIIRNHYVGRTFIQPTQQIRNLGVKLKHNANRAVIEGKRVVLVDDSIVRGT 374 (479)
T ss_pred CeEEEEcCccHHHHHHHHHHhcC-CCeeheEEEEeecCccccccccccccccEEEEecccccccCCCEEEEEeceeCchH
Confidence 33544445667789999999997 98753222 2232 0111233322 234789999999865443 3
Q ss_pred hHHHHHHHHHhccccCCceEEEEe-----ecCCCCC---ccccccCCCcccHHHHHHHHhcCCCCCCCCCEEEEEe
Q 023987 80 VIFEQISVIYALPRLFVASFTLVL-----PFFPTGS---FERMEEEGDVATAFTMARILSNIPTSRGGPTSLVIYD 147 (274)
Q Consensus 80 ~l~elll~~~a~r~~~a~~i~~vi-----PY~~ysR---qdr~~~~g~~~~a~~~a~ll~~~~~~~~g~d~ii~vd 147 (274)
.+. .+++.|++.||++|.+.+ -|-.|.- .++...-+.-.+...+++.| |+|.+..+.
T Consensus 375 Tl~---~~~~~l~~~Ga~~v~~~~~~p~~~~~~~~gid~~~~~~l~~~~~~~~ei~~~i--------gadsl~yls 439 (479)
T PRK09123 375 TSR---KIVQMLRDAGAKEVHLRIASPPITHPCFYGIDTPERSKLLAATHSLEEMAEYI--------GADSLAFLS 439 (479)
T ss_pred HHH---HHHHHHHHcCCCEEEEEEcCCCCccceeecCCCCCHHHHHHcCCCHHHHHHHh--------CCCeEeccC
Confidence 333 467788999999999887 3444444 22221111123566666666 567665554
No 108
>PTZ00149 hypoxanthine phosphoribosyltransferase; Provisional
Probab=90.83 E-value=3.9 Score=36.41 Aligned_cols=97 Identities=8% Similarity=0.139 Sum_probs=59.4
Q ss_pred hhHHHhhCCCCcEEEEe-cCCcHHHHHHHHHHcCC----------cce---eeeeEeeeCC----CcceEEEeecCCCCC
Q 023987 5 REIKAKKSQKKQVHLFY-CVECEELARKVAAQSDL----------ITL---QSINWRNFAD----GWPNLYINSAHDIRG 66 (274)
Q Consensus 5 ~~~~~~~~~~~~~~i~~-~~~~~~la~~ia~~lg~----------~~~---~~~~~~~F~d----GE~~~~v~~~~~v~g 66 (274)
+||.+.... +++.+++ .++.-.++..+.+.|.. ++. .-+.++.|.| ||..+.-....++.|
T Consensus 72 ~~I~~dy~~-~~~vilgILkGg~~FaadL~~~L~~~~~~~~~~~~~~~~~~dfi~vsSY~~~~s~g~v~i~~~~~~~l~g 150 (241)
T PTZ00149 72 YDIKQVYGN-EELHILCILKGSRGFFSALVDYLNRIHNYSSTESPKPPYQEHYVRVKSYCNDESTGKLEIVSDDLSCLKD 150 (241)
T ss_pred HHHHHHcCC-CCeEEEEECCCCHHHHHHHHHHHhhhhhccccccCcccccccEEEEEEccCCCcCCceEEecccccccCC
Confidence 455554443 3444444 68888888888888741 123 6667777755 433222233456899
Q ss_pred CeEEEEEecCCchhHHHHHHHHHhccccCCceEEEEee
Q 023987 67 QHVAFLASFSSPGVIFEQISVIYALPRLFVASFTLVLP 104 (274)
Q Consensus 67 ~~V~iiqs~~~~~~l~elll~~~a~r~~~a~~i~~viP 104 (274)
++|+||....+....|. .+++.|++.|++++.++.-
T Consensus 151 k~VLIVDDIidTG~Tl~--~~~~~L~~~g~~~V~va~L 186 (241)
T PTZ00149 151 KHVLIVEDIIDTGNTLV--KFCEYLKKFEPKTIRIATL 186 (241)
T ss_pred CEEEEEEeEeChHHHHH--HHHHHHHhcCCCEEEEEEE
Confidence 99999998766533332 2345677788888865543
No 109
>PRK05205 bifunctional pyrimidine regulatory protein PyrR uracil phosphoribosyltransferase; Provisional
Probab=90.23 E-value=5.2 Score=33.57 Aligned_cols=88 Identities=17% Similarity=0.166 Sum_probs=53.6
Q ss_pred CcEEEEe-cCCcHHHHHHHHHHcC---Ccc--eeeeeEeeeCCCc-----c-eEE-EeecCCCCCCeEEEEEecCCch-h
Q 023987 15 KQVHLFY-CVECEELARKVAAQSD---LIT--LQSINWRNFADGW-----P-NLY-INSAHDIRGQHVAFLASFSSPG-V 80 (274)
Q Consensus 15 ~~~~i~~-~~~~~~la~~ia~~lg---~~~--~~~~~~~~F~dGE-----~-~~~-v~~~~~v~g~~V~iiqs~~~~~-~ 80 (274)
.+..+++ ..+.-.+|..+++.|+ +++ +..+....|-|+. . .++ ..++.++.|++|+||..+.+.. .
T Consensus 31 ~~~viv~il~gG~~~a~~La~~L~~~~~~~~~~~~l~~~~y~~~~~~~~~~~~~~~~~l~~~v~gr~VLIVDDIidTG~T 110 (176)
T PRK05205 31 DNLVLVGIKTRGVWLAERLAERLEQLEGVDVPVGELDITLYRDDLTKKGLHPQVKPTDIPFDIEGKRVILVDDVLYTGRT 110 (176)
T ss_pred CCeEEEEEccCCHHHHHHHHHHHHHHcCCCCccceEEEEEeecCccccCcccccccccCCCCCCCCEEEEEecccCcHHH
Confidence 3455554 5777899999999994 133 4555566665542 1 111 2345578999999999876653 3
Q ss_pred HHHHHHHHHhccccC-CceEEEEeec
Q 023987 81 IFEQISVIYALPRLF-VASFTLVLPF 105 (274)
Q Consensus 81 l~elll~~~a~r~~~-a~~i~~viPY 105 (274)
+.+ +++.+++.| ++++.++.-+
T Consensus 111 l~~---~~~~L~~~G~~~~v~~avL~ 133 (176)
T PRK05205 111 IRA---ALDALFDYGRPARVQLAVLV 133 (176)
T ss_pred HHH---HHHHHHhcCCCcEEEEEEEE
Confidence 433 446666666 5676544333
No 110
>PRK07272 amidophosphoribosyltransferase; Provisional
Probab=89.91 E-value=2.3 Score=41.69 Aligned_cols=122 Identities=13% Similarity=0.129 Sum_probs=72.0
Q ss_pred cEEEEecCCcHHHHHHHHHHcCCcceeeeeE------eee--CCC---cceEEEe---ecCCCCCCeEEEEEecCCchhH
Q 023987 16 QVHLFYCVECEELARKVAAQSDLITLQSINW------RNF--ADG---WPNLYIN---SAHDIRGQHVAFLASFSSPGVI 81 (274)
Q Consensus 16 ~~~i~~~~~~~~la~~ia~~lg~~~~~~~~~------~~F--~dG---E~~~~v~---~~~~v~g~~V~iiqs~~~~~~l 81 (274)
.+.+-.-++...+|..+|+.+| +++..--+ ++| |.. +.+++.. +.+.++|++|++|...-.--..
T Consensus 287 D~VvpVPnqa~~lA~~la~~lg-ip~~~~lvk~~~~~rt~~~~~q~~R~~~vr~~f~~~~~~~~gk~vllVDDvittG~T 365 (484)
T PRK07272 287 DIVIGVPNSSLSAASGYAEESG-LPYEMGLVKNQYVARTFIQPTQELREQGVRMKLSAVSGVVKGKRVVMVDDSIVRGTT 365 (484)
T ss_pred CEEEEecHHHHHHHHHHHHHHC-CCcccCeEEEccCCccccCCCHHHHHHHHhhCccccccccCCCEEEEEccccCchHH
Confidence 4544334667799999999997 98743222 244 221 1122222 2456889999999754332232
Q ss_pred HHHHHHHHhccccCCceEEEEee--------cCCCCCccccccCCCcccHHHHHHHHhcCCCCCCCCCEEEEEeC
Q 023987 82 FEQISVIYALPRLFVASFTLVLP--------FFPTGSFERMEEEGDVATAFTMARILSNIPTSRGGPTSLVIYDI 148 (274)
Q Consensus 82 ~elll~~~a~r~~~a~~i~~viP--------Y~~ysRqdr~~~~g~~~~a~~~a~ll~~~~~~~~g~d~ii~vdl 148 (274)
+. -.+..+|++||+.|.+++- |++.-++.+...-..-.+...+++.+ |+|.+..+.+
T Consensus 366 ~~--~~~~~L~~~Ga~~v~~~~~~p~~~~~c~ygid~~~~~~lia~~~~~~ei~~~~--------~~dsl~~~~~ 430 (484)
T PRK07272 366 SR--RIVQLLKEAGAKEVHVAIASPELKYPCFYGIDIQTRRELISANHSVEEICDII--------GADSLTYLSV 430 (484)
T ss_pred HH--HHHHHHHhcCCcEEEEEEeCCccccChhhhccCcCHHHHHhcCCCHHHHHHHh--------CCCEEEEecH
Confidence 32 4677888999999988877 44555555442111223455555555 5676666654
No 111
>PLN02297 ribose-phosphate pyrophosphokinase
Probab=88.29 E-value=6.9 Score=36.45 Aligned_cols=82 Identities=12% Similarity=-0.018 Sum_probs=56.2
Q ss_pred EEEecCCChHHHHHHhhc---CCCeEEEEEEEeCCceEE--EeeeCCCCCCeEEEEeccccchHHHHH---HHHHHHhCC
Q 023987 186 VIAFPDDGAWKRFHKMLD---HFPTVVCAKVREGDKRIV--RIKEGNPAGCHVVIVDDLVQSGGTLIE---CQVLSYLLP 257 (274)
Q Consensus 186 viV~pd~G~~~ra~~~a~---~~~~~~~~k~R~~~~~i~--~~~~~~v~gk~vlIVDDIi~TG~Tl~~---aa~~Lk~~G 257 (274)
+++-...++-..|..+++ +.++..+...|-.+++.. .....+++|++|+||=-..+- .-+.+ .+..||++|
T Consensus 17 ~~i~~g~~~~~LA~~ia~~l~g~~l~~~~~~~FpDGE~~v~v~~~~~vrg~~V~ivqs~~~p-d~lmELLl~~dAlr~~g 95 (326)
T PLN02297 17 VHLFYCEETEELARKIAAESDAIELGSINWRKFPDGFPNLFINNAHGIRGQHVAFLASFSSP-AVIFEQLSVIYALPKLF 95 (326)
T ss_pred eEEEECCCCHHHHHHHHHHhCCCceeeeEEEECCCCCEEEEEcCCCCcCCCeEEEECCCCCC-hHHHHHHHHHHHHHHcC
Confidence 444444566777877775 356666667776777433 233578999999999776544 44443 678999999
Q ss_pred CcEEEEEEece
Q 023987 258 AVLLKMCVSEF 268 (274)
Q Consensus 258 A~~V~~~~tH~ 268 (274)
|++|.++.-+.
T Consensus 96 a~~i~~ViPY~ 106 (326)
T PLN02297 96 VASFTLVLPFF 106 (326)
T ss_pred CCEEEEEeeCC
Confidence 99999877543
No 112
>KOG1017 consensus Predicted uracil phosphoribosyltransferase [General function prediction only]
Probab=88.17 E-value=0.75 Score=39.68 Aligned_cols=38 Identities=8% Similarity=-0.006 Sum_probs=34.3
Q ss_pred eeeCCCCCCeEEEEeccccchHHHHHHHHHHHhCCCcE
Q 023987 223 IKEGNPAGCHVVIVDDLVQSGGTLIECQVLSYLLPAVL 260 (274)
Q Consensus 223 ~~~~~v~gk~vlIVDDIi~TG~Tl~~aa~~Lk~~GA~~ 260 (274)
....|+--|+||+.=-+++||.|+.+|.+.|+++|...
T Consensus 182 rfppDI~sR~VLLmYPi~stGnTV~~Av~VL~EhgVp~ 219 (267)
T KOG1017|consen 182 RFPPDITSRRVLLMYPIISTGNTVCKAVEVLKEHGVPD 219 (267)
T ss_pred ecCCcccceeEEEEeeeecCCccHHHHHHHHHHcCCCc
Confidence 34568999999999999999999999999999999764
No 113
>PF15610 PRTase_3: PRTase ComF-like
Probab=88.00 E-value=0.62 Score=41.99 Aligned_cols=40 Identities=13% Similarity=0.066 Sum_probs=35.1
Q ss_pred eCCCCCCeEEEEeccccchHHHHHHHHHHHhCCCcEEEEE
Q 023987 225 EGNPAGCHVVIVDDLVQSGGTLIECQVLSYLLPAVLLKMC 264 (274)
Q Consensus 225 ~~~v~gk~vlIVDDIi~TG~Tl~~aa~~Lk~~GA~~V~~~ 264 (274)
...++||.||.+|||--||++=..+.+.+++.|++....+
T Consensus 133 ~~~l~gk~lIflDDIkITGshE~~V~~~~~~~~~~~~~~y 172 (274)
T PF15610_consen 133 KEFLSGKHLIFLDDIKITGSHEDKVRKILKEYGLENDFIY 172 (274)
T ss_pred HHHhCCcEEEEeccEEecCcHHHHHHHHHHHcCccccEEE
Confidence 3457999999999999999999999999999999875443
No 114
>TIGR01090 apt adenine phosphoribosyltransferase. A phylogenetic analysis suggested omitting the bi-directional best hit homologs from the spirochetes from the seed for this model and making only tentative predictions of adenine phosphoribosyltransferase function for this lineage.
Probab=87.63 E-value=7.9 Score=32.19 Aligned_cols=77 Identities=13% Similarity=0.022 Sum_probs=47.5
Q ss_pred CCcHHHHHHHHHHcCCcceeeeeEeee------------CCCcceEEEeecCCCCCCeEEEEEecCCchhHHHHHHHHHh
Q 023987 23 VECEELARKVAAQSDLITLQSINWRNF------------ADGWPNLYINSAHDIRGQHVAFLASFSSPGVIFEQISVIYA 90 (274)
Q Consensus 23 ~~~~~la~~ia~~lg~~~~~~~~~~~F------------~dGE~~~~v~~~~~v~g~~V~iiqs~~~~~~l~elll~~~a 90 (274)
.+.-.+|..+|..|| +++..+.-... .+|+..+.+......+|++|+||.........|. -+++.
T Consensus 55 ~~G~~~A~~la~~L~-~~~~~i~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gk~VLIVDDIitTG~Tl~--~a~~~ 131 (169)
T TIGR01090 55 ARGFIFGAALAYKLG-VGFVPVRKPGKLPGETISASYDLEYGKDQLEIHKDAIKPGQRVLIVDDLLATGGTAE--ATDEL 131 (169)
T ss_pred hccHHHHHHHHHHHC-CCEEEEEeCCCCCCceeeeEEeeccCceEEEEehhhcCCcCEEEEEeccccchHHHH--HHHHH
Confidence 555699999999996 98754433222 1332233333233458999999987765533222 35666
Q ss_pred ccccCCceEEEE
Q 023987 91 LPRLFVASFTLV 102 (274)
Q Consensus 91 ~r~~~a~~i~~v 102 (274)
+++.|++.+.++
T Consensus 132 L~~~Ga~~v~~~ 143 (169)
T TIGR01090 132 IRKLGGEVVEAA 143 (169)
T ss_pred HHHcCCEEEEEE
Confidence 777888766543
No 115
>PRK02304 adenine phosphoribosyltransferase; Provisional
Probab=86.72 E-value=8.7 Score=32.10 Aligned_cols=75 Identities=16% Similarity=0.078 Sum_probs=46.5
Q ss_pred cCCcHHHHHHHHHHcCCcceeeeeEee-eC-----------CCcceEEEeecCCCCCCeEEEEEecCCchhHHHHHHHHH
Q 023987 22 CVECEELARKVAAQSDLITLQSINWRN-FA-----------DGWPNLYINSAHDIRGQHVAFLASFSSPGVIFEQISVIY 89 (274)
Q Consensus 22 ~~~~~~la~~ia~~lg~~~~~~~~~~~-F~-----------dGE~~~~v~~~~~v~g~~V~iiqs~~~~~~l~elll~~~ 89 (274)
..+.-.+|..+|..|| +++.-+.-.+ ++ .|+..+++.-...++|++|+||....+.-.- +..+++
T Consensus 59 ~~~Gi~~a~~la~~l~-~p~~~~rk~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~g~~VLIVDDivtTG~T--l~~~~~ 135 (175)
T PRK02304 59 EARGFIFGAALAYKLG-IGFVPVRKPGKLPRETISESYELEYGTDTLEIHKDAIKPGDRVLIVDDLLATGGT--LEAAIK 135 (175)
T ss_pred ccchHHHHHHHHHHhC-CCEEEEEcCCCCCCceEeEEEecccCceEEEEchhhcCCCCEEEEEeCCccccHH--HHHHHH
Confidence 4566799999999996 9875432221 11 1332333332234789999999987654322 224556
Q ss_pred hccccCCceE
Q 023987 90 ALPRLFVASF 99 (274)
Q Consensus 90 a~r~~~a~~i 99 (274)
.+++.|++.+
T Consensus 136 ~l~~~Ga~~v 145 (175)
T PRK02304 136 LLERLGAEVV 145 (175)
T ss_pred HHHHcCCEEE
Confidence 6778888765
No 116
>PRK08341 amidophosphoribosyltransferase; Provisional
Probab=83.98 E-value=9.3 Score=37.11 Aligned_cols=88 Identities=13% Similarity=0.028 Sum_probs=54.4
Q ss_pred CcEEEEecCCcHHHHHHHHHHcCCcceeeeeEeeeC--------C-CcceEEEe---ecCCCCCCeEEEEEecCCchhHH
Q 023987 15 KQVHLFYCVECEELARKVAAQSDLITLQSINWRNFA--------D-GWPNLYIN---SAHDIRGQHVAFLASFSSPGVIF 82 (274)
Q Consensus 15 ~~~~i~~~~~~~~la~~ia~~lg~~~~~~~~~~~F~--------d-GE~~~~v~---~~~~v~g~~V~iiqs~~~~~~l~ 82 (274)
..+.+-.-.+...+|..+|+.+| +++...-+++.. . -+..++.+ +...++|++|++|...-.--..+
T Consensus 272 ~D~Vv~VPdsg~~~A~~~a~~lg-ip~~~~l~k~r~~~rtfi~~~qr~~~~~~k~~~~~~~v~gk~VlLVDD~IttGtTl 350 (442)
T PRK08341 272 GDVVIAVPDSGRTAALGFAHESG-IPYMEGLIKNRYIGRTFIMPSGRELKVKLKLSPVREVINGKRVVLVDDSIVRGTTM 350 (442)
T ss_pred CceEEEecCchHHHHHHHHHHhC-CCchheEEEeccccccccCcCchhhhheeeecccccccCCCEEEEEeeeeccHHHH
Confidence 34444444445589999999997 998653333222 1 22222222 24567899999997543322333
Q ss_pred HHHHHHHhccccCCceEEEEeec
Q 023987 83 EQISVIYALPRLFVASFTLVLPF 105 (274)
Q Consensus 83 elll~~~a~r~~~a~~i~~viPY 105 (274)
. .++..|+++||++|.+.+.-
T Consensus 351 ~--~~~~~L~~aGAk~V~~~~~s 371 (442)
T PRK08341 351 K--RIVKMLRDAGAREVHVRIAS 371 (442)
T ss_pred H--HHHHHHHhcCCcEEEEEEcC
Confidence 3 36788999999999887643
No 117
>PF14572 Pribosyl_synth: Phosphoribosyl synthetase-associated domain; PDB: 2H07_B 2H06_B 3S5J_B 2HCR_A 3EFH_A 2H08_A 1DKR_B 1DKU_B 1IBS_B 2JI4_A ....
Probab=83.48 E-value=7.4 Score=33.23 Aligned_cols=95 Identities=14% Similarity=0.134 Sum_probs=57.4
Q ss_pred eecCCCCCCeEEEEEecCCc-hhHHHHHHHHHhccccCCceEEEEeecCCCCCccccccCCCcccHHHHHHHHhcCCCCC
Q 023987 59 NSAHDIRGQHVAFLASFSSP-GVIFEQISVIYALPRLFVASFTLVLPFFPTGSFERMEEEGDVATAFTMARILSNIPTSR 137 (274)
Q Consensus 59 ~~~~~v~g~~V~iiqs~~~~-~~l~elll~~~a~r~~~a~~i~~viPY~~ysRqdr~~~~g~~~~a~~~a~ll~~~~~~~ 137 (274)
.+-.+|.|++++|+..+.+. ..++ ..++.||+.||++|.++..+.=++- + .. +.|+.
T Consensus 76 ~vVGDV~gk~~IIvDDiIdtg~Tl~---~aA~~Lk~~GA~~V~~~aTHgvfs~--------~-----A~-~~l~~----- 133 (184)
T PF14572_consen 76 NVVGDVKGKICIIVDDIIDTGGTLI---KAAELLKERGAKKVYACATHGVFSG--------D-----AP-ERLEE----- 133 (184)
T ss_dssp EEES--TTSEEEEEEEEESSTHHHH---HHHHHHHHTTESEEEEEEEEE---T--------T-----HH-HHHHH-----
T ss_pred EEEEEccCCeEeeecccccchHHHH---HHHHHHHHcCCCEEEEEEeCcccCc--------h-----HH-HHHhh-----
Confidence 34479999999999987654 4444 4677899999999999887754432 1 22 33443
Q ss_pred CCCCEEEEEeC--CchhhhcccCCCCcccccchHHHHHHHHhcC
Q 023987 138 GGPTSLVIYDI--HALQERFYFSDHVLPLFETGIPLLKQRLHQL 179 (274)
Q Consensus 138 ~g~d~ii~vdl--H~~~~~~ff~~~~~~l~~~~~~~la~~l~~~ 179 (274)
..+|+|++-|- |..+.... ..+..+ +.+++||+.|++.
T Consensus 134 s~Id~vvvTnTIp~~~~~~~~--~Ki~vl--dis~llaeaI~ri 173 (184)
T PF14572_consen 134 SPIDEVVVTNTIPQEEQKLQC--PKIKVL--DISPLLAEAIRRI 173 (184)
T ss_dssp SSESEEEEETTS--HHHHHH---TTEEEE----HHHHHHHHHHH
T ss_pred cCCeEEEEeccccCchhhhcC--CCEeEe--ehHHHHHHHHHHH
Confidence 36899999884 43322211 122222 5689999998764
No 118
>TIGR01134 purF amidophosphoribosyltransferase. Alternate name: glutamine phosphoribosylpyrophosphate (PRPP) amidotransferase.
Probab=83.22 E-value=20 Score=34.76 Aligned_cols=119 Identities=15% Similarity=0.135 Sum_probs=67.7
Q ss_pred cEEEEecCCcHHHHHHHHHHcCCcceeeeeEe------ee--CCCc---ceE--EEe-ecCCCCCCeEEEEEecCCchhH
Q 023987 16 QVHLFYCVECEELARKVAAQSDLITLQSINWR------NF--ADGW---PNL--YIN-SAHDIRGQHVAFLASFSSPGVI 81 (274)
Q Consensus 16 ~~~i~~~~~~~~la~~ia~~lg~~~~~~~~~~------~F--~dGE---~~~--~v~-~~~~v~g~~V~iiqs~~~~~~l 81 (274)
.+.+-.-.+....|..+|+.+| +++...-++ +| |+.+ ..+ +.. +...++|++|++|...-.--..
T Consensus 275 D~Vv~VP~sg~~~A~~la~~lg-ip~~~~l~r~~~~~r~~i~~~q~~R~~~v~~k~~~~~~~~~gk~v~lvDD~ittG~T 353 (442)
T TIGR01134 275 DVVIPVPDSGRSAALGFAQASG-IPYREGLIKNRYVGRTFIMPTQELRELSVRLKLNPIREVFRGKRVVLVDDSIVRGTT 353 (442)
T ss_pred EEEEEccCCHHHHHHHHHHHhC-CCchHHeEEeccccccccCCCHHHHHHHHhhhcccccccCCCCEEEEEeccccccHH
Confidence 3444334456789999999997 987542222 23 2221 011 111 2346789999999864333233
Q ss_pred HHHHHHHHhccccCCceEEEEee--------cCCC---CCccccccCCCcccHHHHHHHHhcCCCCCCCCCEEEEEeC
Q 023987 82 FEQISVIYALPRLFVASFTLVLP--------FFPT---GSFERMEEEGDVATAFTMARILSNIPTSRGGPTSLVIYDI 148 (274)
Q Consensus 82 ~elll~~~a~r~~~a~~i~~viP--------Y~~y---sRqdr~~~~g~~~~a~~~a~ll~~~~~~~~g~d~ii~vdl 148 (274)
+. ..+..++++|++.|.+++. |++- +|++... .+ .+...+++.+ |+|.+..+.+
T Consensus 354 ~~--~~~~~l~~~ga~~v~~~~~spp~~~pc~yg~d~~~~~el~~--~~-~~~~~i~~~~--------~~~~l~~~~~ 418 (442)
T TIGR01134 354 SR--QIVKMLRDAGAKEVHVRIASPPIRYPCYYGIDMPTREELIA--NG-RTVEEIAKEI--------GADSLAYLSL 418 (442)
T ss_pred HH--HHHHHHHHcCCcEEEEEEccCCccCCcccccCCCCHHHHhh--cC-CCHHHHHHHh--------CCCEEEEecH
Confidence 32 4668888999999988776 3443 3443321 11 3455555555 5676666543
No 119
>PRK05793 amidophosphoribosyltransferase; Provisional
Probab=83.18 E-value=13 Score=36.39 Aligned_cols=91 Identities=10% Similarity=0.017 Sum_probs=56.0
Q ss_pred CcEEEEecCCcHHHHHHHHHHcCCcceeeeeE-eee-------CCC---cceEEEe---ecCCCCCCeEEEEEecCCchh
Q 023987 15 KQVHLFYCVECEELARKVAAQSDLITLQSINW-RNF-------ADG---WPNLYIN---SAHDIRGQHVAFLASFSSPGV 80 (274)
Q Consensus 15 ~~~~i~~~~~~~~la~~ia~~lg~~~~~~~~~-~~F-------~dG---E~~~~v~---~~~~v~g~~V~iiqs~~~~~~ 80 (274)
..+.+-.-.+...+|..+|+.+| +++...-+ .++ |+. +...+++ +...++|++|++|...-.--.
T Consensus 289 ~D~Vv~vPdsg~~~A~~~A~~lg-ip~~~~l~r~~~~~rtfi~~~q~~R~~~~~~k~~~~~~~v~gk~VlLVDD~ItTGt 367 (469)
T PRK05793 289 ADIVIGVPDSGIPAAIGYAEASG-IPYGIGFIKNKYVGRTFIAPSQELRERAVRVKLNPLKVNVEGKRVVLIDDSIVRGT 367 (469)
T ss_pred CCEEEEcCccHHHHHHHHHHHhC-CCEeeeEEEeeeccccccChhHhhhhhhheEecccCccccCCCEEEEEccccCchH
Confidence 34444444556799999999997 99854222 221 111 1112222 235688999999986433323
Q ss_pred HHHHHHHHHhccccCCceEEEEeecCCC
Q 023987 81 IFEQISVIYALPRLFVASFTLVLPFFPT 108 (274)
Q Consensus 81 l~elll~~~a~r~~~a~~i~~viPY~~y 108 (274)
.|. .++..||++||++|.+++..-|.
T Consensus 368 Tl~--~~~~~Lr~aGAk~V~~~~~~p~~ 393 (469)
T PRK05793 368 TSK--RLVELLRKAGAKEVHFRVSSPPV 393 (469)
T ss_pred HHH--HHHHHHHHcCCCEEEEEEECCCc
Confidence 333 37788999999999987665544
No 120
>PRK13811 orotate phosphoribosyltransferase; Provisional
Probab=82.89 E-value=8 Score=32.34 Aligned_cols=68 Identities=21% Similarity=0.185 Sum_probs=47.2
Q ss_pred CCcHHHHHHHHHHcCCcceeeeeEeeeCCCcceEEEeecCCCCCCeEEEEEecCCc-hhHHHHHHHHHhccccCCc
Q 023987 23 VECEELARKVAAQSDLITLQSINWRNFADGWPNLYINSAHDIRGQHVAFLASFSSP-GVIFEQISVIYALPRLFVA 97 (274)
Q Consensus 23 ~~~~~la~~ia~~lg~~~~~~~~~~~F~dGE~~~~v~~~~~v~g~~V~iiqs~~~~-~~l~elll~~~a~r~~~a~ 97 (274)
.+.-.+|..+|..|| .++.-+.-.....|+..... .+++|++|+||...-.. ..+.+ .++.|+++|++
T Consensus 65 ~gGi~~A~~~a~~l~-~p~~~~rK~~k~~g~~~~~~---g~~~g~~VlIVDDvi~TG~T~~~---~~~~l~~~Ga~ 133 (170)
T PRK13811 65 VGGVPLAVAVSLAAG-KPYAIIRKEAKDHGKAGLII---GDVKGKRVLLVEDVTTSGGSALY---GIEQLRAAGAV 133 (170)
T ss_pred cCcHHHHHHHHHHHC-CCEEEEecCCCCCCCcceEE---cccCCCEEEEEEecccccHHHHH---HHHHHHHCCCe
Confidence 446799999999996 99876665555667543322 46899999999876544 44544 45566677764
No 121
>PRK02277 orotate phosphoribosyltransferase-like protein; Provisional
Probab=81.48 E-value=12 Score=32.12 Aligned_cols=78 Identities=14% Similarity=0.095 Sum_probs=50.2
Q ss_pred cCCcHHHHHHHHHHcCCcceeeeeEeeeCCCcce-E--EEe-ecCCCCCCeEEEEEecCCc-hhHHHHHHHHHhccccCC
Q 023987 22 CVECEELARKVAAQSDLITLQSINWRNFADGWPN-L--YIN-SAHDIRGQHVAFLASFSSP-GVIFEQISVIYALPRLFV 96 (274)
Q Consensus 22 ~~~~~~la~~ia~~lg~~~~~~~~~~~F~dGE~~-~--~v~-~~~~v~g~~V~iiqs~~~~-~~l~elll~~~a~r~~~a 96 (274)
..+.-.+|..+|..|| .++..+.-.++..|+.. . .+. .-..++|++|+||...-.. ..+.+ .++.+++.|+
T Consensus 93 ~~gG~~~A~~lA~~L~-~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~gk~VlIVDDVitTG~Tl~~---ai~~l~~~Ga 168 (200)
T PRK02277 93 AKSGVPLATLVADELG-KDLAIYHPKKWDHGEGEKKTGSFSRNFASVEGKRCVIVDDVITSGTTMKE---TIEYLKEHGG 168 (200)
T ss_pred ccCCHHHHHHHHHHhC-CCcEEEecccccccccccccceeccccccCCcCEEEEEeeccCchHHHHH---HHHHHHHcCC
Confidence 4667899999999996 88866655554333211 1 111 0135789999999876554 44544 3456678888
Q ss_pred ceEEEEe
Q 023987 97 ASFTLVL 103 (274)
Q Consensus 97 ~~i~~vi 103 (274)
+.+.++.
T Consensus 169 ~~v~v~v 175 (200)
T PRK02277 169 KPVAVVV 175 (200)
T ss_pred EEEEEEE
Confidence 8775543
No 122
>PF00156 Pribosyltran: Phosphoribosyl transferase domain; InterPro: IPR000836 The name PRT comes from phosphoribosyltransferase (PRTase) enzymes, which carry out phosphoryl transfer reactions on 5-phosphoribosyl-alpha1-pyrophosphate PRPP, an activated form of ribose-5-phosphate. Members of Phosphoribosyltransferase (PRT) are catalytic and are regulatory proteins involved in nucleotide synthesis and salvage []. This includes a range of diverse phosphoribosyl transferase enzymes including adenine phosphoribosyltransferase (2.4.2.7 from EC); hypoxanthine-guanine-xanthine phosphoribosyltransferase; hypoxanthine phosphoribosyltransferase (2.4.2.8 from EC); ribose-phosphate pyrophosphokinase (2.7.6.1 from EC); amidophosphoribosyltransferase (2.4.2.14 from EC); orotate phosphoribosyltransferase (2.4.2.10 from EC);uracil phosphoribosyltransferase (2.4.2.9 from EC); and xanthine-guanine phosphoribosyltransferase (2.4.2.22 from EC). Not all PRT proteins are enzymes. For example, in some bacteria PRT proteins regulate the expression of purine and pyrimidine synthetic genes. Members of PRT are defined by the protein fold and by a short 13-residue sequence motif, The motif consists of four hydrophobic amino acids, two acidic amino acids and seven amino acids of variable character, usually including glycine and threonine. The motif has been predicted to be a PRPP-binding site in advance of structural information [, ]. Apart of this motif, different PRT proteins have a low level of sequence identity, less than 15%. The PRT sequence motif is only found in PRTases from the nucleotide synthesis and salvage pathways. Other PRTases, from the tryptophan, histidine and nicotinamide synthetic and salvage pathways, lack the PRT sequence motif and appear to be unrelated to each other and unrelated to the PRT family.; GO: 0009116 nucleoside metabolic process; PDB: 2JBH_A 1Y0B_D 2FXV_B 1GPH_1 1AO0_D 1ORO_B 1VCH_C 2WNS_A 2PRZ_B 2PS1_A ....
Probab=78.88 E-value=27 Score=26.69 Aligned_cols=78 Identities=21% Similarity=0.187 Sum_probs=50.8
Q ss_pred cCCcHHHHHHHHHHcCCcceeeeeEee----------eCCCcceEEEeecCCCCCCeEEEEEecCCc-hhHHHHHHHHHh
Q 023987 22 CVECEELARKVAAQSDLITLQSINWRN----------FADGWPNLYINSAHDIRGQHVAFLASFSSP-GVIFEQISVIYA 90 (274)
Q Consensus 22 ~~~~~~la~~ia~~lg~~~~~~~~~~~----------F~dGE~~~~v~~~~~v~g~~V~iiqs~~~~-~~l~elll~~~a 90 (274)
..+...+|..+|..|+ .++....... -..+.........+.+.|++|+||....+. ..+.+ .++.
T Consensus 35 ~~~G~~~a~~la~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gk~vliVDDvi~tG~Tl~~---~~~~ 110 (125)
T PF00156_consen 35 PRGGIPLAAALARALG-IPLVFVRKRKSYYPGSDKTSREKNNQELFIIDKEDIKGKRVLIVDDVIDTGGTLKE---AIEL 110 (125)
T ss_dssp TTTTHHHHHHHHHHHT-HEEEEEEEEEEEESEEEEEEEETEEEEEEEEESSSGTTSEEEEEEEEESSSHHHHH---HHHH
T ss_pred hhccHHHHHHHHHHhC-CCccceeeeecccccchhhhhccCceEEeecccccccceeEEEEeeeEcccHHHHH---HHHH
Confidence 5667899999999996 8764443221 111111122334678899999999976554 44444 4556
Q ss_pred ccccCCceEEEEe
Q 023987 91 LPRLFVASFTLVL 103 (274)
Q Consensus 91 ~r~~~a~~i~~vi 103 (274)
+++.|++.+.++.
T Consensus 111 L~~~g~~~v~~~v 123 (125)
T PF00156_consen 111 LKEAGAKVVGVAV 123 (125)
T ss_dssp HHHTTBSEEEEEE
T ss_pred HHhCCCcEEEEEE
Confidence 7788888887654
No 123
>TIGR01367 pyrE_Therm orotate phosphoribosyltransferase, Thermus family. This model represents a distinct clade of orotate phosphoribosyltransferases. Members include the experimentally determined example from Thermus aquaticus and additional examples from Caulobacter crescentus, Helicobacter pylori, Mesorhizobium loti, and related species.
Probab=78.47 E-value=41 Score=28.58 Aligned_cols=77 Identities=14% Similarity=0.054 Sum_probs=48.5
Q ss_pred cEEEEecCCcHHHHHHHHHHcCCcceeeeeEeeeCCCcceEEEeecC-CCCCCeEEEEEecCCc-hhHHHHHHHHHhccc
Q 023987 16 QVHLFYCVECEELARKVAAQSDLITLQSINWRNFADGWPNLYINSAH-DIRGQHVAFLASFSSP-GVIFEQISVIYALPR 93 (274)
Q Consensus 16 ~~~i~~~~~~~~la~~ia~~lg~~~~~~~~~~~F~dGE~~~~v~~~~-~v~g~~V~iiqs~~~~-~~l~elll~~~a~r~ 93 (274)
.+.+=...+.-.+|..+|..|+ .++.-. ++.. |+ +++.... -.+|++|+||...-+. ..+.+ +++.|++
T Consensus 60 d~Ivgi~~gGi~~A~~la~~L~-~~~i~~--~k~~-~~--~~~~~~~~l~~G~~VLIVDDIi~TG~Tl~~---a~~~l~~ 130 (187)
T TIGR01367 60 DFIVGPAMGGVILGYEVARQLS-VRSIFA--EREG-GG--MKLRRGFAVKPGEKFVAVEDVVTTGGSLLE---AIRAIEG 130 (187)
T ss_pred CEEEEEccCcHHHHHHHHHHhC-CCeEEE--EEeC-Cc--EEEeecccCCCCCEEEEEEeeecchHHHHH---HHHHHHH
Confidence 4433335778899999999996 886433 3333 54 3333222 2479999999987655 33433 3455688
Q ss_pred cCCceEEE
Q 023987 94 LFVASFTL 101 (274)
Q Consensus 94 ~~a~~i~~ 101 (274)
.|++.+.+
T Consensus 131 ~Ga~vv~~ 138 (187)
T TIGR01367 131 QGGQVVGL 138 (187)
T ss_pred cCCeEEEE
Confidence 88876643
No 124
>PRK00455 pyrE orotate phosphoribosyltransferase; Validated
Probab=74.96 E-value=36 Score=29.06 Aligned_cols=74 Identities=16% Similarity=0.120 Sum_probs=47.2
Q ss_pred cCCcHHHHHHHHHHcCCcceeeeeEeeeCCCcceEEEeecCCCCCCeEEEEEecCCc-hhHHHHHHHHHhccccCCceEE
Q 023987 22 CVECEELARKVAAQSDLITLQSINWRNFADGWPNLYINSAHDIRGQHVAFLASFSSP-GVIFEQISVIYALPRLFVASFT 100 (274)
Q Consensus 22 ~~~~~~la~~ia~~lg~~~~~~~~~~~F~dGE~~~~v~~~~~v~g~~V~iiqs~~~~-~~l~elll~~~a~r~~~a~~i~ 100 (274)
..+.-.+|..+|..|+ +++.-..-.....|+. -.+. ....+|++|+||...-+. ..+.+. ++.+++.|++.+.
T Consensus 72 ~~gG~~~A~~la~~L~-~~~~~~rk~~~~~g~~-~~~~-~~~~~g~~VliVDDvi~tG~Tl~~~---~~~l~~~Ga~~v~ 145 (202)
T PRK00455 72 ATGGIPLAAAVARALD-LPAIFVRKEAKDHGEG-GQIE-GRRLFGKRVLVVEDVITTGGSVLEA---VEAIRAAGAEVVG 145 (202)
T ss_pred ccCcHHHHHHHHHHhC-CCEEEEecccCCCCCC-ceEE-ccCCCCCEEEEEecccCCcHHHHHH---HHHHHHcCCEEEE
Confidence 4678899999999996 8876554333333431 2233 234579999999876544 444443 5666777876654
Q ss_pred E
Q 023987 101 L 101 (274)
Q Consensus 101 ~ 101 (274)
+
T Consensus 146 ~ 146 (202)
T PRK00455 146 V 146 (202)
T ss_pred E
Confidence 3
No 125
>PLN02293 adenine phosphoribosyltransferase
Probab=74.70 E-value=52 Score=27.96 Aligned_cols=75 Identities=11% Similarity=0.062 Sum_probs=46.4
Q ss_pred cCCcHHHHHHHHHHcCCcceeeeeEeeeCCC------------cceEEEeecCCC-CCCeEEEEEecCCc-hhHHHHHHH
Q 023987 22 CVECEELARKVAAQSDLITLQSINWRNFADG------------WPNLYINSAHDI-RGQHVAFLASFSSP-GVIFEQISV 87 (274)
Q Consensus 22 ~~~~~~la~~ia~~lg~~~~~~~~~~~F~dG------------E~~~~v~~~~~v-~g~~V~iiqs~~~~-~~l~elll~ 87 (274)
....-.||..+|..|| .++.-+.-.+..+| +..+.+.. ..+ +|++|+||..+-.. ..+.+ +
T Consensus 70 e~~Gi~lA~~lA~~Lg-~p~v~~rK~~k~~~~~~~~~~~~~~g~~~l~l~~-~~i~~G~rVlIVDDvitTG~T~~~---~ 144 (187)
T PLN02293 70 EARGFIFGPPIALAIG-AKFVPLRKPGKLPGEVISEEYVLEYGTDCLEMHV-GAVEPGERALVIDDLIATGGTLCA---A 144 (187)
T ss_pred CCCchHHHHHHHHHHC-CCEEEEEecCCCCCceEEEEEeccCCceEEEEEc-CccCCCCEEEEEeccccchHHHHH---H
Confidence 3556789999999997 88764444333223 21122222 344 79999999876544 34443 4
Q ss_pred HHhccccCCceEEE
Q 023987 88 IYALPRLFVASFTL 101 (274)
Q Consensus 88 ~~a~r~~~a~~i~~ 101 (274)
++.+++.|++.+.+
T Consensus 145 ~~~l~~~Ga~~v~~ 158 (187)
T PLN02293 145 INLLERAGAEVVEC 158 (187)
T ss_pred HHHHHHCCCEEEEE
Confidence 56777788876544
No 126
>PRK13812 orotate phosphoribosyltransferase; Provisional
Probab=74.34 E-value=20 Score=30.14 Aligned_cols=81 Identities=14% Similarity=0.099 Sum_probs=51.2
Q ss_pred EEEe-cCCcHHHHHHHHHHcCCcceeeeeEeeeCCCcceEEEeecCCC-CCCeEEEEEecCCc-hhHHHHHHHHHhcccc
Q 023987 18 HLFY-CVECEELARKVAAQSDLITLQSINWRNFADGWPNLYINSAHDI-RGQHVAFLASFSSP-GVIFEQISVIYALPRL 94 (274)
Q Consensus 18 ~i~~-~~~~~~la~~ia~~lg~~~~~~~~~~~F~dGE~~~~v~~~~~v-~g~~V~iiqs~~~~-~~l~elll~~~a~r~~ 94 (274)
+|++ ..+.-.+|..+|..|| .++.-..-.+-..|+... +. ..+ +|++|+||...-+. ..+.+ .++.+++.
T Consensus 61 ~ivg~~~ggi~lA~~lA~~l~-~p~~~~rk~~k~yg~~~~-~~--g~~~~g~~VlIVDDvitTG~Tl~~---~~~~l~~~ 133 (176)
T PRK13812 61 KLAGVALGAVPLVAVTSVETG-VPYVIARKQAKEYGTGNR-IE--GRLDEGEEVVVLEDIATTGQSAVD---AVEALREA 133 (176)
T ss_pred EEEEeecchHHHHHHHHHHHC-CCEEEEeccCCcCCCCCe-EE--ecCCCcCEEEEEEEeeCCCHHHHH---HHHHHHHC
Confidence 3443 4556799999999997 987655554445564322 22 344 79999999876543 45544 45666677
Q ss_pred CCceE--EEEeec
Q 023987 95 FVASF--TLVLPF 105 (274)
Q Consensus 95 ~a~~i--~~viPY 105 (274)
|++-+ .+++.+
T Consensus 134 Ga~vv~~~vlvdr 146 (176)
T PRK13812 134 GATVNRVLVVVDR 146 (176)
T ss_pred CCeEEEEEEEEEC
Confidence 77543 334544
No 127
>PRK07349 amidophosphoribosyltransferase; Provisional
Probab=72.31 E-value=53 Score=32.48 Aligned_cols=80 Identities=11% Similarity=0.034 Sum_probs=49.6
Q ss_pred CCcHHHHHHHHHHcCCcceeeeeEeeeCCCc-----------ce--EEE-eecCCCCCCeEEEEEecCCchhHHHHHHHH
Q 023987 23 VECEELARKVAAQSDLITLQSINWRNFADGW-----------PN--LYI-NSAHDIRGQHVAFLASFSSPGVIFEQISVI 88 (274)
Q Consensus 23 ~~~~~la~~ia~~lg~~~~~~~~~~~F~dGE-----------~~--~~v-~~~~~v~g~~V~iiqs~~~~~~l~elll~~ 88 (274)
.+...+|..+|+.+| +++...-+++.--|. .. ++. .+.+.++|++|++|.....--..+. .++
T Consensus 321 ~sg~~~A~g~A~~lg-ip~~~~L~r~~y~grtfi~p~q~~R~~~~~~kl~~~~~~~~gkrVlLVDDvIttGtTl~--~~~ 397 (500)
T PRK07349 321 DSGIPAAIGFSQASG-IPYAEGLIKNRYVGRTFIQPTQSMRESGIRMKLNPLKDVLAGKRIIIVDDSIVRGTTSR--KIV 397 (500)
T ss_pred cccHHHHHHHHHHHC-CCchhceEEEeccCccccCCCHHHHHhhhheeeeccccccCCCEEEEEeceeCCcHHHH--HHH
Confidence 445588999999997 998643443322210 01 121 1345678999999975433222222 366
Q ss_pred HhccccCCceEEEEeec
Q 023987 89 YALPRLFVASFTLVLPF 105 (274)
Q Consensus 89 ~a~r~~~a~~i~~viPY 105 (274)
.+||++||+.|.+.+.-
T Consensus 398 ~~Lr~aGAkeV~~~i~s 414 (500)
T PRK07349 398 KALRDAGATEVHMRISS 414 (500)
T ss_pred HHHHHhCCeEEEEEeCC
Confidence 88899999999876433
No 128
>PRK09246 amidophosphoribosyltransferase; Provisional
Probab=71.65 E-value=46 Score=32.85 Aligned_cols=85 Identities=11% Similarity=0.065 Sum_probs=51.4
Q ss_pred cEEEEecCCcHHHHHHHHHHcCCcceeeeeEee-eC-------CC---cceEEE--e-ecCCCCCCeEEEEEecCCchhH
Q 023987 16 QVHLFYCVECEELARKVAAQSDLITLQSINWRN-FA-------DG---WPNLYI--N-SAHDIRGQHVAFLASFSSPGVI 81 (274)
Q Consensus 16 ~~~i~~~~~~~~la~~ia~~lg~~~~~~~~~~~-F~-------dG---E~~~~v--~-~~~~v~g~~V~iiqs~~~~~~l 81 (274)
.+.+-.-.+...+|..+|+.+| +++..--+++ +. +. +.+++. . +...++|++|++|.....--..
T Consensus 295 D~VvpVP~s~~~~A~~la~~lg-ip~~~~l~k~~~~~rt~i~~~q~~R~~~vr~~f~~~~~~v~gK~VlLVDDvitTGaT 373 (501)
T PRK09246 295 DVVIPIPDTSRDAALEIARILG-VPYREGFVKNRYVGRTFIMPGQAQRKKSVRQKLNAIRAEFKGKNVLLVDDSIVRGTT 373 (501)
T ss_pred cEEEEeCccHHHHHHHHHHHHC-CCccceEEEEecccccccCcCHHHHHHHHHhhcCCccccccCCeEEEEeccccccHH
Confidence 3444334455689999999997 9875332222 21 10 001111 1 2456889999999865433333
Q ss_pred HHHHHHHHhccccCCceEEEEe
Q 023987 82 FEQISVIYALPRLFVASFTLVL 103 (274)
Q Consensus 82 ~elll~~~a~r~~~a~~i~~vi 103 (274)
+. .++.+|+++||++|.+++
T Consensus 374 l~--~~~~~L~~aGA~~V~v~v 393 (501)
T PRK09246 374 SE--QIVQMAREAGAKKVYFAS 393 (501)
T ss_pred HH--HHHHHHHHcCCCEEEEEE
Confidence 33 367889999999998754
No 129
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=68.59 E-value=12 Score=29.78 Aligned_cols=37 Identities=19% Similarity=0.227 Sum_probs=32.7
Q ss_pred eCCCCCCeEEEEeccccchHHHHHHHHHHHhCCCcEEEEEE
Q 023987 225 EGNPAGCHVVIVDDLVQSGGTLIECQVLSYLLPAVLLKMCV 265 (274)
Q Consensus 225 ~~~v~gk~vlIVDDIi~TG~Tl~~aa~~Lk~~GA~~V~~~~ 265 (274)
.++++|++++|+ =+|++-..++..|.+.|+++|+++-
T Consensus 7 ~~~l~~~~vlvi----GaGg~ar~v~~~L~~~g~~~i~i~n 43 (135)
T PF01488_consen 7 FGDLKGKRVLVI----GAGGAARAVAAALAALGAKEITIVN 43 (135)
T ss_dssp HSTGTTSEEEEE----SSSHHHHHHHHHHHHTTSSEEEEEE
T ss_pred cCCcCCCEEEEE----CCHHHHHHHHHHHHHcCCCEEEEEE
Confidence 358999999986 5899999999999999999998764
No 130
>PLN02501 digalactosyldiacylglycerol synthase
Probab=67.54 E-value=58 Score=33.87 Aligned_cols=109 Identities=17% Similarity=0.127 Sum_probs=63.2
Q ss_pred ecCCcHHHHHHHHHHcCCcceeeeeEeeeCCCcce--EEEeecCCCCCCeEEEEEecCCc----hhHHHHHHHHHhcccc
Q 023987 21 YCVECEELARKVAAQSDLITLQSINWRNFADGWPN--LYINSAHDIRGQHVAFLASFSSP----GVIFEQISVIYALPRL 94 (274)
Q Consensus 21 ~~~~~~~la~~ia~~lg~~~~~~~~~~~F~dGE~~--~~v~~~~~v~g~~V~iiqs~~~~----~~l~elll~~~a~r~~ 94 (274)
.++++-+|--+||..+. ..= ++|.+|=.+ .+-.+. -.+++|.|+-+-+-| -.+..|+..+.-++.
T Consensus 283 ~~~~~~~~~~~~~~~~~-~~~-----~~~~~~~~~~~~~~~~~--~~~r~~~ivTtAslPWmTGtavnpL~rAayLa~~- 353 (794)
T PLN02501 283 SDNHNDELDLRIASVLQ-STG-----HCYDGGFWTDSSKHELS--DGKRHVAIVTTASLPWMTGTAVNPLFRAAYLAKS- 353 (794)
T ss_pred cccccccchhhhhhhhh-ccC-----ccccCCcccCccccccc--cCCCeEEEEEcccCcccccccccHHHHHHHhccc-
Confidence 35566688888888885 221 233333110 011111 125899998876666 356677777776664
Q ss_pred CCceEEEEeecCCCCCccccccCCCccc-----HHHHHHHHhcCCCCCCCCCE
Q 023987 95 FVASFTLVLPFFPTGSFERMEEEGDVAT-----AFTMARILSNIPTSRGGPTS 142 (274)
Q Consensus 95 ~a~~i~~viPY~~ysRqdr~~~~g~~~~-----a~~~a~ll~~~~~~~~g~d~ 142 (274)
|-.+||+|+|+++.+-|....-++-.+. -.++-++|.. ++|+..
T Consensus 354 ~~~~VtlviPWl~~~dq~~vy~~~~~F~~p~eQe~~ir~wl~~----r~g~~~ 402 (794)
T PLN02501 354 AKQNVTLLVPWLCKSDQELVYPNNLTFSSPEEQESYIRNWLEE----RIGFKA 402 (794)
T ss_pred CCceEEEEEecCCccccccccCCCcccCCHHHHHHHHHHHHHH----hcCCCC
Confidence 5689999999999765544432221121 2346667754 256553
No 131
>PRK12560 adenine phosphoribosyltransferase; Provisional
Probab=66.01 E-value=54 Score=27.82 Aligned_cols=74 Identities=18% Similarity=0.139 Sum_probs=45.3
Q ss_pred CCcHHHHHHHHHHcCCcceeeeeEeeeCCC------------cceEEEeecCCCCCCeEEEEEecCCc-hhHHHHHHHHH
Q 023987 23 VECEELARKVAAQSDLITLQSINWRNFADG------------WPNLYINSAHDIRGQHVAFLASFSSP-GVIFEQISVIY 89 (274)
Q Consensus 23 ~~~~~la~~ia~~lg~~~~~~~~~~~F~dG------------E~~~~v~~~~~v~g~~V~iiqs~~~~-~~l~elll~~~ 89 (274)
.+.-.+|..+|..++ .++......+++.. ..+-.+......+|++|+||...-.. ..+. -.++
T Consensus 60 ~~Gi~lA~~vA~~l~-~p~~~~rk~~~~~~~~~~~~~~~~~~~~eg~~~~~~~~~G~rVlIVDDvitTG~T~~---~ai~ 135 (187)
T PRK12560 60 DKGAPLATPVSLLSG-KPLAMARWYPYSLSELNYNVVEIGSEYFEGVVYLNGIEKGDRVAIIDDTLSTGGTVI---ALIK 135 (187)
T ss_pred cccHHHHHHHHHhhC-CCEEEeccCCCcccceeEEeeeeeccceeeeeEccCCCCcCEEEEEEeccccCHHHH---HHHH
Confidence 456799999999996 88755543322221 11111222334579999999876544 3443 3556
Q ss_pred hccccCCceEE
Q 023987 90 ALPRLFVASFT 100 (274)
Q Consensus 90 a~r~~~a~~i~ 100 (274)
.++++|+..+.
T Consensus 136 ll~~aGa~vv~ 146 (187)
T PRK12560 136 AIENSGGIVSD 146 (187)
T ss_pred HHHHCCCEEEE
Confidence 77788886543
No 132
>PF01380 SIS: SIS domain SIS domain web page.; InterPro: IPR001347 The SIS (Sugar ISomerase) domain is a phosphosugar-binding domain [] found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars possibly by binding to the end-product of the pathway.; GO: 0005529 sugar binding, 0005975 carbohydrate metabolic process; PDB: 3TBF_C 2V4M_A 2ZJ4_A 2ZJ3_A 3FKJ_A 3ODP_A 3EUA_H 1VIV_A 1M3S_B 1TZB_A ....
Probab=65.43 E-value=6.3 Score=30.42 Aligned_cols=81 Identities=11% Similarity=0.098 Sum_probs=50.9
Q ss_pred hCCCCcEEEEecCCcHHHHHHHHHHcCCcceeeeeEeeeCCCcceEEEeecCCCCCCeEEEEEecCCc-hhHHHHHHHHH
Q 023987 11 KSQKKQVHLFYCVECEELARKVAAQSDLITLQSINWRNFADGWPNLYINSAHDIRGQHVAFLASFSSP-GVIFEQISVIY 89 (274)
Q Consensus 11 ~~~~~~~~i~~~~~~~~la~~ia~~lg~~~~~~~~~~~F~dGE~~~~v~~~~~v~g~~V~iiqs~~~~-~~l~elll~~~ 89 (274)
..+.+.+.+++..++..+|+..+.+| .+++.....-++.++. .-.....+...|++|+-|.++. .+++++ +.
T Consensus 2 i~~~~~i~i~G~G~s~~~A~~~~~~l--~~~~~~~~~~~~~~~~--~~~~~~~~~~~d~vi~is~sg~~~~~~~~---~~ 74 (131)
T PF01380_consen 2 IAKAKRIYIYGSGSSYGVAQYAALKL--QKLGRIVVISYEAGEF--FHGPLENLDPDDLVIIISYSGETRELIEL---LR 74 (131)
T ss_dssp HTTSSEEEEEESTHHHHHHHHHHHHH--HHHHSSEEEEEEHHHH--HTTGGGGCSTTEEEEEEESSSTTHHHHHH---HH
T ss_pred CCCCCEEEEEEcchHHHHHHHHHHHH--HHhcCcceeccchHHH--hhhhcccccccceeEeeeccccchhhhhh---hH
Confidence 45678889998888888999999888 3555555554555531 1111234455788888885543 345554 44
Q ss_pred hccccCCce
Q 023987 90 ALPRLFVAS 98 (274)
Q Consensus 90 a~r~~~a~~ 98 (274)
.+|+.|++-
T Consensus 75 ~ak~~g~~v 83 (131)
T PF01380_consen 75 FAKERGAPV 83 (131)
T ss_dssp HHHHTTSEE
T ss_pred HHHhcCCeE
Confidence 677777644
No 133
>TIGR00336 pyrE orotate phosphoribosyltransferase. The conserved Lys (K) residue at position 101 of the seed alignment has been proposed as the active site for the enzyme.
Probab=64.92 E-value=40 Score=28.10 Aligned_cols=75 Identities=12% Similarity=0.012 Sum_probs=45.0
Q ss_pred EEEe-cCCcHHHHHHHHHHcCCcc-----eeeeeEeeeCCCcceEEEeecCCCCCCeEEEEEecCCc-hhHHHHHHHHHh
Q 023987 18 HLFY-CVECEELARKVAAQSDLIT-----LQSINWRNFADGWPNLYINSAHDIRGQHVAFLASFSSP-GVIFEQISVIYA 90 (274)
Q Consensus 18 ~i~~-~~~~~~la~~ia~~lg~~~-----~~~~~~~~F~dGE~~~~v~~~~~v~g~~V~iiqs~~~~-~~l~elll~~~a 90 (274)
+|++ ..+.-.+|..+|..|+ .+ +.-..-.....|+... +. .+..+|++|+||....+. ..+.+ .++.
T Consensus 57 ~Ivg~~~gG~~~A~~la~~l~-~~~~~~~~~~~rk~~k~~g~~~~-~~-g~~~~g~~VlIVDDvi~TG~Tl~~---a~~~ 130 (173)
T TIGR00336 57 VIAGPALGGIPIATAVSVKLA-KPGGDIPLCFNRKEAKDHGEGGN-IE-GELLEGDKVVVVEDVITTGTSILE---AVEI 130 (173)
T ss_pred EEEccccChHHHHHHHHHHhc-CcCCCceEEEEcCCcccCCCCCc-ee-cCCCCCCEEEEEeccccChHHHHH---HHHH
Confidence 3444 3456699999999996 87 4333222223354222 22 234579999999987655 34444 4566
Q ss_pred ccccCCce
Q 023987 91 LPRLFVAS 98 (274)
Q Consensus 91 ~r~~~a~~ 98 (274)
++++|++-
T Consensus 131 l~~~Ga~v 138 (173)
T TIGR00336 131 IQAAGGQV 138 (173)
T ss_pred HHHcCCeE
Confidence 67777644
No 134
>PRK06781 amidophosphoribosyltransferase; Provisional
Probab=62.34 E-value=48 Score=32.48 Aligned_cols=90 Identities=10% Similarity=0.019 Sum_probs=53.8
Q ss_pred CcEEEEecCCcHHHHHHHHHHcCCcceeeeeEe-ee-----C--CC---cceE--EEe-ecCCCCCCeEEEEEecCCchh
Q 023987 15 KQVHLFYCVECEELARKVAAQSDLITLQSINWR-NF-----A--DG---WPNL--YIN-SAHDIRGQHVAFLASFSSPGV 80 (274)
Q Consensus 15 ~~~~i~~~~~~~~la~~ia~~lg~~~~~~~~~~-~F-----~--dG---E~~~--~v~-~~~~v~g~~V~iiqs~~~~~~ 80 (274)
..+.+-.-.+...+|..+|+.+| +++...-++ ++ . +. +.++ ... +.+.++|++|++|.....--.
T Consensus 284 ~D~vv~VP~s~~~~A~~~a~~~g-ip~~~~lik~~~~~rt~~~~~~~~R~~~v~~~f~~~~~~i~gk~VlLVDDvittGt 362 (471)
T PRK06781 284 ADVVTGVPDSSISAAIGYAEATG-IPYELGLIKNRYVGRTFIQPSQELREQGVKMKLSAVRGVVEGKRVVMIDDSIVRGT 362 (471)
T ss_pred CcEEEEcChhHHHHHHHHHHHhC-CCcccceEEEccCCCCCcCCCHHHHHHHHhcceeccccccCCceEEEEeceeccch
Confidence 44444334456789999999997 987542222 22 2 11 1112 122 245688999999975322222
Q ss_pred HHHHHHHHHhccccCCceEEEEeecCC
Q 023987 81 IFEQISVIYALPRLFVASFTLVLPFFP 107 (274)
Q Consensus 81 l~elll~~~a~r~~~a~~i~~viPY~~ 107 (274)
.+. .++.+||++||++|.+.+---|
T Consensus 363 Tl~--~~~~~Lk~aGA~eV~v~i~sPp 387 (471)
T PRK06781 363 TSK--RIVRMLREAGATEVHVRIASPP 387 (471)
T ss_pred HHH--HHHHHHHHcCCcEEEEEECCCC
Confidence 222 4677899999999988765433
No 135
>smart00450 RHOD Rhodanese Homology Domain. An alpha beta fold found duplicated in the Rhodanese protein. The the Cysteine containing enzymatically active version of the domain is also found in the CDC25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and stress proteins such as Senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions with a loss of the cysteine are also seen in Dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases. These are likely to play a role in protein interactions.
Probab=60.98 E-value=16 Score=25.99 Aligned_cols=35 Identities=17% Similarity=-0.017 Sum_probs=28.7
Q ss_pred CCCCCeEEEEeccccchHHHHHHHHHHHhCCCcEEEEE
Q 023987 227 NPAGCHVVIVDDLVQSGGTLIECQVLSYLLPAVLLKMC 264 (274)
Q Consensus 227 ~v~gk~vlIVDDIi~TG~Tl~~aa~~Lk~~GA~~V~~~ 264 (274)
.-+++++++++ .+|.....++..|++.|-+.|+.+
T Consensus 53 ~~~~~~iv~~c---~~g~~a~~~~~~l~~~G~~~v~~l 87 (100)
T smart00450 53 LDKDKPVVVYC---RSGNRSAKAAWLLRELGFKNVYLL 87 (100)
T ss_pred CCCCCeEEEEe---CCCcHHHHHHHHHHHcCCCceEEe
Confidence 34577899988 678888999999999999987654
No 136
>cd01529 4RHOD_Repeats Member of the Rhodanese Homology Domain superfamily. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. Only the second and most of the fourth repeats contain the putative catalytic Cys residue. This CD aligns the 1st , 2nd, 3rd, and 4th repeats.
Probab=60.68 E-value=17 Score=26.67 Aligned_cols=33 Identities=9% Similarity=-0.113 Sum_probs=26.9
Q ss_pred CCCeEEEEeccccchHHHHHHHHHHHhCCCcEEEEE
Q 023987 229 AGCHVVIVDDLVQSGGTLIECQVLSYLLPAVLLKMC 264 (274)
Q Consensus 229 ~gk~vlIVDDIi~TG~Tl~~aa~~Lk~~GA~~V~~~ 264 (274)
++++++++++ +|.+...++..|+..|-.+|+.+
T Consensus 55 ~~~~ivv~c~---~g~~s~~~~~~l~~~G~~~v~~l 87 (96)
T cd01529 55 RATRYVLTCD---GSLLARFAAQELLALGGKPVALL 87 (96)
T ss_pred CCCCEEEEeC---ChHHHHHHHHHHHHcCCCCEEEe
Confidence 5678899864 78888889999999999887654
No 137
>cd05008 SIS_GlmS_GlmD_1 SIS (Sugar ISomerase) domain repeat 1 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=60.67 E-value=35 Score=26.15 Aligned_cols=79 Identities=9% Similarity=-0.071 Sum_probs=44.8
Q ss_pred EEEEecCCcHHHHHHHHHHcCCcceeeeeEeeeCCCcceEEEeecCCCCCCeEEEEEecCCchhHHHHHHHHHhccccCC
Q 023987 17 VHLFYCVECEELARKVAAQSDLITLQSINWRNFADGWPNLYINSAHDIRGQHVAFLASFSSPGVIFEQISVIYALPRLFV 96 (274)
Q Consensus 17 ~~i~~~~~~~~la~~ia~~lg~~~~~~~~~~~F~dGE~~~~v~~~~~v~g~~V~iiqs~~~~~~l~elll~~~a~r~~~a 96 (274)
+.+++..+|...|...+.+|. .++.....-++..|. ... ...+...|++|+-|.+... -|++.+++.+|+.|+
T Consensus 2 I~i~G~G~S~~~a~~~~~~l~--~~~~~~~~~~~~~~~--~~~-~~~~~~~d~~I~iS~sG~t--~e~~~~~~~a~~~g~ 74 (126)
T cd05008 2 ILIVGCGTSYHAALVAKYLLE--RLAGIPVEVEAASEF--RYR-RPLLDEDTLVIAISQSGET--ADTLAALRLAKEKGA 74 (126)
T ss_pred EEEEEccHHHHHHHHHHHHHH--HhcCCceEEEehhHh--hhc-CCCCCCCcEEEEEeCCcCC--HHHHHHHHHHHHcCC
Confidence 456665566777888887773 443333333444432 212 1235568888888765432 245556777888886
Q ss_pred ceEEEEe
Q 023987 97 ASFTLVL 103 (274)
Q Consensus 97 ~~i~~vi 103 (274)
+ +.++-
T Consensus 75 ~-vi~iT 80 (126)
T cd05008 75 K-TVAIT 80 (126)
T ss_pred e-EEEEE
Confidence 4 44443
No 138
>PF14681 UPRTase: Uracil phosphoribosyltransferase; PDB: 1V9S_B 1UPF_A 1UPU_D 1JLR_B 1BD4_A 1BD3_C 1JLS_D 1XTV_C 1XTU_H 3G6W_C ....
Probab=60.47 E-value=96 Score=26.66 Aligned_cols=84 Identities=14% Similarity=0.091 Sum_probs=57.8
Q ss_pred cEEEEe-cCCcHHHHHHHHHHcCCcceeeeeEeeeCC-Ccce-EEEeecCCCCCCeEEEEEecCC-chhHHHHHHHHHhc
Q 023987 16 QVHLFY-CVECEELARKVAAQSDLITLQSINWRNFAD-GWPN-LYINSAHDIRGQHVAFLASFSS-PGVIFEQISVIYAL 91 (274)
Q Consensus 16 ~~~i~~-~~~~~~la~~ia~~lg~~~~~~~~~~~F~d-GE~~-~~v~~~~~v~g~~V~iiqs~~~-~~~l~elll~~~a~ 91 (274)
++++++ ..+-..|.+.+.+.+.+.+.+.+-+.+=++ +|.. .+.++++++.++.|+++.++.. ...++. .++.+
T Consensus 68 ~i~~V~IlRaG~~m~~~~~~~~p~a~~g~i~i~r~~~t~~p~~~y~~LP~~i~~~~VillDpmlaTG~s~~~---ai~~L 144 (207)
T PF14681_consen 68 KICIVPILRAGLPMLEGFREVFPDARVGHIGIQRDEETLEPVLYYNKLPEDIENRKVILLDPMLATGGSAIA---AIEIL 144 (207)
T ss_dssp CEEEEEETTTHHHHHHHHHHHSTTSEEEEEEEEEETTTSSEEEEEEE--TTGTTSEEEEEESEESSSHHHHH---HHHHH
T ss_pred cEEEEEEeCCcHHHHHHHHHhCCCcceEEEEEEEcCCccceeeeHhhCCCCccCCEEEEEeccccchhhHHH---HHHHH
Confidence 677777 678889999999999888889988877553 3332 3456788898999999988754 344443 34445
Q ss_pred cccCC--ceEEEE
Q 023987 92 PRLFV--ASFTLV 102 (274)
Q Consensus 92 r~~~a--~~i~~v 102 (274)
++.|+ ++|+++
T Consensus 145 ~~~G~~~~~I~~v 157 (207)
T PF14681_consen 145 KEHGVPEENIIIV 157 (207)
T ss_dssp HHTTG-GGEEEEE
T ss_pred HHcCCCcceEEEE
Confidence 55555 566654
No 139
>PRK07631 amidophosphoribosyltransferase; Provisional
Probab=58.68 E-value=76 Score=31.17 Aligned_cols=89 Identities=11% Similarity=0.021 Sum_probs=53.6
Q ss_pred cEEEEecCCcHHHHHHHHHHcCCcceeeeeEe------eeCCC-----cceE--EEe-ecCCCCCCeEEEEEecCCchhH
Q 023987 16 QVHLFYCVECEELARKVAAQSDLITLQSINWR------NFADG-----WPNL--YIN-SAHDIRGQHVAFLASFSSPGVI 81 (274)
Q Consensus 16 ~~~i~~~~~~~~la~~ia~~lg~~~~~~~~~~------~F~dG-----E~~~--~v~-~~~~v~g~~V~iiqs~~~~~~l 81 (274)
.+.+-.-.++..+|..+|+.+| +++...-++ .|..- +.++ ... +.+.++|++|++|...-.--..
T Consensus 285 D~VvpVP~s~~~~A~gla~~~g-ip~~~~lik~~~~~Rt~i~~~~~~R~~nv~~~f~~~~~~v~gk~VlLVDDsittGtT 363 (475)
T PRK07631 285 DVVTGVPDSSISAAIGYAEATG-IPYELGLIKNRYVGRTFIQPSQALREQGVKMKLSPVRGVVEGKRVVMVDDSIVRGTT 363 (475)
T ss_pred cEEEEechhHHHHHHHHHHHHC-CCcccceEEEecCCCCCcCCCHHHHHHHHhhhhhhcccccCCceEEEEeeeeccHHH
Confidence 3444333455679999999997 988643333 13222 1111 111 2456889999999754322233
Q ss_pred HHHHHHHHhccccCCceEEEEeecCC
Q 023987 82 FEQISVIYALPRLFVASFTLVLPFFP 107 (274)
Q Consensus 82 ~elll~~~a~r~~~a~~i~~viPY~~ 107 (274)
+. .++.+|+++||++|.+.+.--|
T Consensus 364 l~--~~~~~L~~aGA~eV~v~~~sPp 387 (475)
T PRK07631 364 SR--RIVTMLREAGATEVHVRISSPP 387 (475)
T ss_pred HH--HHHHHHHHcCCCEEEEEEeCCC
Confidence 33 4668899999999988765433
No 140
>cd01444 GlpE_ST GlpE sulfurtransferase (ST) and homologs are members of the Rhodanese Homology Domain superfamily. Unlike other rhodanese sulfurtransferases, GlpE is a single domain protein but indications are that it functions as a dimer. The active site contains a catalytically active cysteine.
Probab=58.50 E-value=17 Score=26.38 Aligned_cols=32 Identities=9% Similarity=-0.112 Sum_probs=27.8
Q ss_pred CCCeEEEEeccccchHHHHHHHHHHHhCCCcEEEE
Q 023987 229 AGCHVVIVDDLVQSGGTLIECQVLSYLLPAVLLKM 263 (274)
Q Consensus 229 ~gk~vlIVDDIi~TG~Tl~~aa~~Lk~~GA~~V~~ 263 (274)
+++.++++.+ +|.+...++..|++.|-..|+.
T Consensus 55 ~~~~ivv~c~---~g~~s~~a~~~l~~~G~~~v~~ 86 (96)
T cd01444 55 RDRPVVVYCY---HGNSSAQLAQALREAGFTDVRS 86 (96)
T ss_pred CCCCEEEEeC---CCChHHHHHHHHHHcCCceEEE
Confidence 5678889877 8999999999999999988863
No 141
>cd05009 SIS_GlmS_GlmD_2 SIS (Sugar ISomerase) domain repeat 2 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=58.39 E-value=40 Score=26.62 Aligned_cols=94 Identities=10% Similarity=-0.061 Sum_probs=56.7
Q ss_pred hhHHHhhCCCCcEEEEecCCcHHHHHHHHHHcCCcceeeeeEeeeCCCcceEEEeecCCCCCCeEEEEEecCCchhHHHH
Q 023987 5 REIKAKKSQKKQVHLFYCVECEELARKVAAQSDLITLQSINWRNFADGWPNLYINSAHDIRGQHVAFLASFSSPGVIFEQ 84 (274)
Q Consensus 5 ~~~~~~~~~~~~~~i~~~~~~~~la~~ia~~lg~~~~~~~~~~~F~dGE~~~~v~~~~~v~g~~V~iiqs~~~~~~l~el 84 (274)
.++-+...+.+.+.+++.-.|...|...+.++ .+.+.+...-+.++|. .-.....+...+++|+-|.... .--+.
T Consensus 4 ~~~a~~~~~~~~i~~~G~G~s~~~a~e~~~kl--~e~~~i~~~~~~~~e~--~hg~~~~~~~~~~vi~is~~g~-t~~~~ 78 (153)
T cd05009 4 KELAEKLKEAKSFYVLGRGPNYGTALEGALKL--KETSYIHAEAYSAGEF--KHGPIALVDEGTPVIFLAPEDR-LEEKL 78 (153)
T ss_pred HHHHHHHhccCcEEEEcCCCCHHHHHHHHHHH--HHHHhhcceeccHHHh--ccChhhhccCCCcEEEEecCCh-hHHHH
Confidence 34455666678888887666888888888888 3666667777777753 2222344555666666654332 11223
Q ss_pred HHHHHhccccCCceEEEEee
Q 023987 85 ISVIYALPRLFVASFTLVLP 104 (274)
Q Consensus 85 ll~~~a~r~~~a~~i~~viP 104 (274)
..++..+++.|+ ++.++..
T Consensus 79 ~~~~~~~~~~~~-~vi~it~ 97 (153)
T cd05009 79 ESLIKEVKARGA-KVIVITD 97 (153)
T ss_pred HHHHHHHHHcCC-EEEEEec
Confidence 346677777765 4444443
No 142
>cd00158 RHOD Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein. The cysteine containing enzymatically active version of the domain is also found in the Cdc25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and certain stress proteins such as senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions (no active site cysteine) are also seen in dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases, where they are believed to play a regulatory role in multidomain proteins.
Probab=58.31 E-value=20 Score=25.15 Aligned_cols=35 Identities=9% Similarity=-0.125 Sum_probs=28.7
Q ss_pred CCCCCeEEEEeccccchHHHHHHHHHHHhCCCcEEEEE
Q 023987 227 NPAGCHVVIVDDLVQSGGTLIECQVLSYLLPAVLLKMC 264 (274)
Q Consensus 227 ~v~gk~vlIVDDIi~TG~Tl~~aa~~Lk~~GA~~V~~~ 264 (274)
.-+++.|+++++- |.....++..|++.|-.+|+.+
T Consensus 47 ~~~~~~vv~~c~~---~~~a~~~~~~l~~~G~~~v~~l 81 (89)
T cd00158 47 LDKDKPIVVYCRS---GNRSARAAKLLRKAGGTNVYNL 81 (89)
T ss_pred cCCCCeEEEEeCC---CchHHHHHHHHHHhCcccEEEe
Confidence 3467888998875 7788899999999998888754
No 143
>COG0034 PurF Glutamine phosphoribosylpyrophosphate amidotransferase [Nucleotide transport and metabolism]
Probab=58.05 E-value=95 Score=30.35 Aligned_cols=125 Identities=14% Similarity=0.067 Sum_probs=69.5
Q ss_pred CCcEEEEecCCcHHHHHHHHHHcCCcceeeeeE------eee--CCC---cceEEEe---ecCCCCCCeEEEEE-ecCCc
Q 023987 14 KKQVHLFYCVECEELARKVAAQSDLITLQSINW------RNF--ADG---WPNLYIN---SAHDIRGQHVAFLA-SFSSP 78 (274)
Q Consensus 14 ~~~~~i~~~~~~~~la~~ia~~lg~~~~~~~~~------~~F--~dG---E~~~~v~---~~~~v~g~~V~iiq-s~~~~ 78 (274)
..-++|=--.|+...|-..|+.+| +|+..--+ ++| |.. |.-++.+ +.+.++||+|++|. |+-.-
T Consensus 283 eaDvVipVPDSg~~aAig~A~~sG-iPy~~GliKNrYvgRTFI~P~q~~R~~~Vr~KLnpvr~~v~GKrVvlVDDSIVRG 361 (470)
T COG0034 283 EADVVIPVPDSGRPAAIGYARASG-IPYEEGLIKNRYVGRTFIMPTQELREKGVRLKLNPVREVVKGKRVVLVDDSIVRG 361 (470)
T ss_pred cccEEEecCCCChHHHHHHHHHhC-CchhhccccccccceeeeCCcHHHHHhhhhhhcCchHHHhCCCeEEEEccccccC
Confidence 344555445777899999999997 88643222 233 332 1112222 35668899999996 33322
Q ss_pred hhHHHHHHHHHhccccCCceEEEEee-----cCCCCC---ccccccCCCcccHHHHHHHHhcCCCCCCCCCEEEEEeCCc
Q 023987 79 GVIFEQISVIYALPRLFVASFTLVLP-----FFPTGS---FERMEEEGDVATAFTMARILSNIPTSRGGPTSLVIYDIHA 150 (274)
Q Consensus 79 ~~l~elll~~~a~r~~~a~~i~~viP-----Y~~ysR---qdr~~~~g~~~~a~~~a~ll~~~~~~~~g~d~ii~vdlH~ 150 (274)
.. + -.+++.+|++||+.|.+-+- |-+|-= +++...=..-.+...+++.+ |+|.+...++-.
T Consensus 362 TT-s--r~IV~mlReAGAkEVHvriasP~i~~Pc~YGID~pt~~eLIA~~~~~eeI~~~I--------gaDSL~yLsleg 430 (470)
T COG0034 362 TT-S--RRIVQMLREAGAKEVHVRIASPPIRYPCFYGIDMPTREELIAANRTVEEIRKAI--------GADSLAYLSLEG 430 (470)
T ss_pred cc-H--HHHHHHHHHhCCCEEEEEecCCCccCCCccccCCCCHHHHhhCCCCHHHHHHHh--------CCCceeeecHHH
Confidence 11 1 13556678999999876532 222222 22222100112355566665 688888887643
No 144
>PRK11595 DNA utilization protein GntX; Provisional
Probab=55.37 E-value=46 Score=29.03 Aligned_cols=75 Identities=20% Similarity=0.168 Sum_probs=44.2
Q ss_pred cHHHHHHHHHHcCCcceeeeeEeeeCC-------C-c---ceE--EEeecCCCCCCeEEEEEecCCchhHHHHHHHHHhc
Q 023987 25 CEELARKVAAQSDLITLQSINWRNFAD-------G-W---PNL--YINSAHDIRGQHVAFLASFSSPGVIFEQISVIYAL 91 (274)
Q Consensus 25 ~~~la~~ia~~lg~~~~~~~~~~~F~d-------G-E---~~~--~v~~~~~v~g~~V~iiqs~~~~~~l~elll~~~a~ 91 (274)
...+|+.++..+| +++..-.+.+-.+ + + .++ ...+..++.|++|+||....+-...|. ..++++
T Consensus 134 ~~~la~~la~~~~-~~~~~~~l~r~~~~~~q~~l~~~~R~~n~~~~f~~~~~~~~~~vllvDDv~tTG~Tl~--~~~~~L 210 (227)
T PRK11595 134 SDLLCRPLARWLG-CDYDSEALTRTRATATQHFLSARLRKRNLKNAFRLELPVQGQHMAIVDDVVTTGSTVA--EIAQLL 210 (227)
T ss_pred HHHHHHHHHHHHC-CCCcccceEEecCCCCcccCCHHHHhhhhhhhhccCCCCCCCEEEEEeeeecchHHHH--HHHHHH
Confidence 3478999999996 7653211111111 0 0 000 112335688999999987765533332 356778
Q ss_pred cccCCceEEEE
Q 023987 92 PRLFVASFTLV 102 (274)
Q Consensus 92 r~~~a~~i~~v 102 (274)
++.|+++|.++
T Consensus 211 ~~~g~~~V~~~ 221 (227)
T PRK11595 211 LRNGAASVQVW 221 (227)
T ss_pred HHcCCcEEEEE
Confidence 88999988764
No 145
>COG2236 Predicted phosphoribosyltransferases [General function prediction only]
Probab=54.42 E-value=91 Score=26.79 Aligned_cols=70 Identities=19% Similarity=0.199 Sum_probs=49.5
Q ss_pred CCcEEEEecCCcHHHHHHHHHHcCCc-ceeeeeEeeeCC-----CcceEEEeecCC-CCCCeEEEEEecCCchhHHHH
Q 023987 14 KKQVHLFYCVECEELARKVAAQSDLI-TLQSINWRNFAD-----GWPNLYINSAHD-IRGQHVAFLASFSSPGVIFEQ 84 (274)
Q Consensus 14 ~~~~~i~~~~~~~~la~~ia~~lg~~-~~~~~~~~~F~d-----GE~~~~v~~~~~-v~g~~V~iiqs~~~~~~l~el 84 (274)
+..+.|--+.+---.|.-||..|| + ++.-+.+..+.+ ||.+++-.++-+ ++|++|+||....+..+.|++
T Consensus 29 ~PDvIiaiaRGG~~pariLsd~L~-~~~l~~i~v~~y~~~~~~~~~~~v~~~~~~d~l~GkkVLIVDDI~DTG~Tl~~ 105 (192)
T COG2236 29 KPDVIVAIARGGLIPARILSDFLG-VKPLYSIKVEHYDETAERDGEAKVKYPITIDPLSGKKVLIVDDIVDTGETLEL 105 (192)
T ss_pred CCCEEEEEcCCceehHHHHHHHhC-CCceEEEEEEEehhhcccCCcceeecCccccccCCCeEEEEecccCchHhHHH
Confidence 455555557777889999999997 6 788888877766 333333334445 899999999988776444443
No 146
>cd05013 SIS_RpiR RpiR-like protein. RpiR contains a SIS (Sugar ISomerase) domain, which is found in many phosphosugar isomerases and phosphosugar binding proteins. In E. coli, rpiR negatively regulates the expression of rpiB gene. Both rpiB and rpiA are ribose phosphate isomerases that catalyze the reversible reactions of ribose 5-phosphate into ribulose 5-phosphate.
Probab=54.02 E-value=36 Score=26.02 Aligned_cols=90 Identities=13% Similarity=0.011 Sum_probs=52.9
Q ss_pred HHHhhCCCCcEEEEecCCcHHHHHHHHHHcCCcceeeeeEeeeCCCcceEEEeecCCCCCCeEEEEEecCCchhHHHHHH
Q 023987 7 IKAKKSQKKQVHLFYCVECEELARKVAAQSDLITLQSINWRNFADGWPNLYINSAHDIRGQHVAFLASFSSPGVIFEQIS 86 (274)
Q Consensus 7 ~~~~~~~~~~~~i~~~~~~~~la~~ia~~lg~~~~~~~~~~~F~dGE~~~~v~~~~~v~g~~V~iiqs~~~~~~l~elll 86 (274)
+-....+.+.+.+++...+..+|...+..|. .++. .....++.+. .. .....+...|++|+-|..... .+++.
T Consensus 6 ~~~~i~~~~~i~i~g~g~s~~~a~~~~~~l~--~~~~-~~~~~~~~~~-~~-~~~~~~~~~~~~i~iS~~g~~--~~~~~ 78 (139)
T cd05013 6 AVDLLAKARRIYIFGVGSSGLVAEYLAYKLL--RLGK-PVVLLSDPHL-QL-MSAANLTPGDVVIAISFSGET--KETVE 78 (139)
T ss_pred HHHHHHhCCEEEEEEcCchHHHHHHHHHHHH--HcCC-ceEEecCHHH-HH-HHHHcCCCCCEEEEEeCCCCC--HHHHH
Confidence 3344456678888887778899999998883 4443 3344555542 11 111223446788887765432 23344
Q ss_pred HHHhccccCCceEEEEee
Q 023987 87 VIYALPRLFVASFTLVLP 104 (274)
Q Consensus 87 ~~~a~r~~~a~~i~~viP 104 (274)
+++.+++.|+ ++.++..
T Consensus 79 ~~~~a~~~g~-~iv~iT~ 95 (139)
T cd05013 79 AAEIAKERGA-KVIAITD 95 (139)
T ss_pred HHHHHHHcCC-eEEEEcC
Confidence 5567888776 4444443
No 147
>COG0856 Orotate phosphoribosyltransferase homologs [Nucleotide transport and metabolism]
Probab=52.05 E-value=69 Score=27.34 Aligned_cols=73 Identities=16% Similarity=0.072 Sum_probs=48.5
Q ss_pred CCcHHHHHHHHHHcCCcceeeeeEeeeCCCcc-----eEEEeecCCCCCCeEEEEEecCCc-hhHHHHHHHHHhccccCC
Q 023987 23 VECEELARKVAAQSDLITLQSINWRNFADGWP-----NLYINSAHDIRGQHVAFLASFSSP-GVIFEQISVIYALPRLFV 96 (274)
Q Consensus 23 ~~~~~la~~ia~~lg~~~~~~~~~~~F~dGE~-----~~~v~~~~~v~g~~V~iiqs~~~~-~~l~elll~~~a~r~~~a 96 (274)
.+--+||..+|..|| ..+.-+.-+++-.-|- -+.=+ =.+|.||+++||...... ..++|. +..+++.|+
T Consensus 95 ~sGvPlAtmvA~elg-~elaiY~PrK~~~de~~~~~G~iS~N-Fa~V~gK~cvIVDDvittG~Ti~E~---Ie~lke~g~ 169 (203)
T COG0856 95 ISGVPLATMVAYELG-KELAIYHPRKHRKDEGAGKGGSISSN-FASVEGKRCVIVDDVITTGSTIKET---IEQLKEEGG 169 (203)
T ss_pred ecCccHHHHHHHHhC-CceEEEecccccccccCCcCceeecc-cccccCceEEEEecccccChhHHHH---HHHHHHcCC
Confidence 344689999999998 8877666555544221 11112 247889999999876544 567774 567778777
Q ss_pred ceEE
Q 023987 97 ASFT 100 (274)
Q Consensus 97 ~~i~ 100 (274)
+-+.
T Consensus 170 kpv~ 173 (203)
T COG0856 170 KPVL 173 (203)
T ss_pred CcEE
Confidence 5443
No 148
>PRK06388 amidophosphoribosyltransferase; Provisional
Probab=51.57 E-value=1.4e+02 Score=29.41 Aligned_cols=80 Identities=10% Similarity=0.046 Sum_probs=48.7
Q ss_pred CcHHHHHHHHHHcCCcceeeee------EeeeC--CCc---ceEEEee---cCCCCCCeEEEEEecCCchhHHHHHHHHH
Q 023987 24 ECEELARKVAAQSDLITLQSIN------WRNFA--DGW---PNLYINS---AHDIRGQHVAFLASFSSPGVIFEQISVIY 89 (274)
Q Consensus 24 ~~~~la~~ia~~lg~~~~~~~~------~~~F~--dGE---~~~~v~~---~~~v~g~~V~iiqs~~~~~~l~elll~~~ 89 (274)
+....|..+|+.+| +++...- -++|- ..+ ..+++.+ .+.+.|++|++|.....--..+. .+++
T Consensus 301 s~~~~A~g~a~~~g-ip~~~~L~r~r~~~r~fi~~~q~~R~~~~~~kl~~~~~~i~gk~VlLVDDsittGtTl~--~~~~ 377 (474)
T PRK06388 301 SGRSQAIGFSMASG-IPYTEGLIKNRYSERTFIMPTQSDRKAAIKLKLNPIREVISGKRIVLVDDSIVRGNTMR--FIVK 377 (474)
T ss_pred CcHHHHHHHHHHhC-CCchhheEEecccCCcccCCchhhhhhceeEEeccccccccCceEEEEeCeECcHHHHH--HHHH
Confidence 34467999999997 9874321 22222 211 1133332 23567899999975433333333 5778
Q ss_pred hccccCCceEEEEeecC
Q 023987 90 ALPRLFVASFTLVLPFF 106 (274)
Q Consensus 90 a~r~~~a~~i~~viPY~ 106 (274)
+|+++||+.|.+.+.--
T Consensus 378 ~L~~aGak~V~~ri~sP 394 (474)
T PRK06388 378 IMRKYGAKEVHVRIGSP 394 (474)
T ss_pred HHHHcCCCEEEEEeCCC
Confidence 88999999988765433
No 149
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=50.92 E-value=85 Score=23.98 Aligned_cols=77 Identities=16% Similarity=0.015 Sum_probs=45.4
Q ss_pred cEEEEecCCcHHHHHHHHHHcCCcceeeeeEeeeCCCcceEEEeecCCCCCCeEEEEEecCCc-hhHHHHHHHHHhcccc
Q 023987 16 QVHLFYCVECEELARKVAAQSDLITLQSINWRNFADGWPNLYINSAHDIRGQHVAFLASFSSP-GVIFEQISVIYALPRL 94 (274)
Q Consensus 16 ~~~i~~~~~~~~la~~ia~~lg~~~~~~~~~~~F~dGE~~~~v~~~~~v~g~~V~iiqs~~~~-~~l~elll~~~a~r~~ 94 (274)
.+.+++..++..+|+.++.++. .++.. ..-..|+|. +.-. ...+...|++|+-|.+.. .++.+ +++.||+.
T Consensus 2 ~I~i~G~G~S~~~a~~~~~~l~--~~g~~-~~~~~~~~~-~~~~-~~~~~~~d~vi~iS~sG~t~~~~~---~~~~a~~~ 73 (128)
T cd05014 2 KVVVTGVGKSGHIARKIAATLS--STGTP-AFFLHPTEA-LHGD-LGMVTPGDVVIAISNSGETDELLN---LLPHLKRR 73 (128)
T ss_pred eEEEEeCcHhHHHHHHHHHHhh--cCCCc-eEEcccchh-hccc-cCcCCCCCEEEEEeCCCCCHHHHH---HHHHHHHC
Confidence 4667776778889999988883 33322 223355542 2211 234555788888887653 34444 45567777
Q ss_pred CCceEE
Q 023987 95 FVASFT 100 (274)
Q Consensus 95 ~a~~i~ 100 (274)
|++-|.
T Consensus 74 g~~vi~ 79 (128)
T cd05014 74 GAPIIA 79 (128)
T ss_pred CCeEEE
Confidence 765443
No 150
>PRK13809 orotate phosphoribosyltransferase; Provisional
Probab=50.45 E-value=97 Score=26.78 Aligned_cols=71 Identities=15% Similarity=0.020 Sum_probs=44.1
Q ss_pred CcHHHHHHHHHHcCCcceeeeeEeeeCCCcceEEEeecC-CCCCCeEEEEEecCCc-hhHHHHHHHHHhccccCCceE
Q 023987 24 ECEELARKVAAQSDLITLQSINWRNFADGWPNLYINSAH-DIRGQHVAFLASFSSP-GVIFEQISVIYALPRLFVASF 99 (274)
Q Consensus 24 ~~~~la~~ia~~lg~~~~~~~~~~~F~dGE~~~~v~~~~-~v~g~~V~iiqs~~~~-~~l~elll~~~a~r~~~a~~i 99 (274)
..-.+|..+|..+| .++....-..-..|+.+ .+.+.. ..+|++|+||...-.. ..+.+ .++++++.|++-+
T Consensus 77 ~Gi~~A~~vA~~l~-~p~~~~RK~~K~~G~~~-~~~~~g~~~~g~~VlIVDDViTTG~Ti~~---a~~~L~~~G~~vv 149 (206)
T PRK13809 77 TALTLATSISLKYN-IPMVLRRKELKNVDPSD-AIKVEGLFTPGQTCLVINDMVSSGKSIIE---TAVALEEEGLVVR 149 (206)
T ss_pred ccHHHHHHHHHHhC-CCEEEEeCCCCCCCCcC-EEEEccccCCCCEEEEEEeccccCHHHHH---HHHHHHHCCCEEE
Confidence 35689999999996 88876554333335432 232222 3478999999876443 44544 4556667777643
No 151
>PRK07847 amidophosphoribosyltransferase; Provisional
Probab=50.29 E-value=1.3e+02 Score=29.90 Aligned_cols=81 Identities=15% Similarity=0.077 Sum_probs=50.5
Q ss_pred CCcHHHHHHHHHHcCCcceeeeeEee------e--CC---CcceEEEee---cCCCCCCeEEEEEecCCchhHHHHHHHH
Q 023987 23 VECEELARKVAAQSDLITLQSINWRN------F--AD---GWPNLYINS---AHDIRGQHVAFLASFSSPGVIFEQISVI 88 (274)
Q Consensus 23 ~~~~~la~~ia~~lg~~~~~~~~~~~------F--~d---GE~~~~v~~---~~~v~g~~V~iiqs~~~~~~l~elll~~ 88 (274)
.+....|..+|+.+| +++...-++. | |. -+..++... .+.+.|++|++|.....--..+. .++
T Consensus 311 ~sG~~~A~g~a~~~g-ip~~~~l~kn~~~grtfi~~~q~~r~~~~r~k~~~~~~~~~gk~vllVDD~ittG~T~~--~~~ 387 (510)
T PRK07847 311 ESGTPAAVGYAQESG-IPFGQGLVKNAYVGRTFIQPSQTIRQLGIRLKLNPLREVIRGKRLVVVDDSIVRGNTQR--ALV 387 (510)
T ss_pred CchHHHHHHHHHHhC-CChhhceEeecccccCccCcchhhhhhceeeecCccccccCCCEEEEEecccCchHHHH--HHH
Confidence 345688999999997 9875543321 1 11 111233332 34578999999975433333333 567
Q ss_pred HhccccCCceEEEEeecC
Q 023987 89 YALPRLFVASFTLVLPFF 106 (274)
Q Consensus 89 ~a~r~~~a~~i~~viPY~ 106 (274)
..||++|+++|.+-+.--
T Consensus 388 ~~L~~~ga~~v~~ri~sP 405 (510)
T PRK07847 388 RMLREAGAAEVHVRISSP 405 (510)
T ss_pred HHHHHcCCCEEEEEECCC
Confidence 888999999998765443
No 152
>cd01523 RHOD_Lact_B Member of the Rhodanese Homology Domain superfamily. This CD includes predicted proteins with rhodanese-like domains found N-terminal of the metallo-beta-lactamase domain.
Probab=50.27 E-value=27 Score=25.74 Aligned_cols=30 Identities=10% Similarity=-0.054 Sum_probs=24.5
Q ss_pred CCCeEEEEeccccchHHHHHHHHHHHhCCCcEEE
Q 023987 229 AGCHVVIVDDLVQSGGTLIECQVLSYLLPAVLLK 262 (274)
Q Consensus 229 ~gk~vlIVDDIi~TG~Tl~~aa~~Lk~~GA~~V~ 262 (274)
+++.++++ |.+|..-..+++.|++.|-. ++
T Consensus 60 ~~~~ivv~---C~~G~rs~~aa~~L~~~G~~-~~ 89 (100)
T cd01523 60 DDQEVTVI---CAKEGSSQFVAELLAERGYD-VD 89 (100)
T ss_pred CCCeEEEE---cCCCCcHHHHHHHHHHcCce-eE
Confidence 45677775 88999999999999999987 54
No 153
>PRK07322 adenine phosphoribosyltransferase; Provisional
Probab=49.91 E-value=1.5e+02 Score=24.71 Aligned_cols=81 Identities=14% Similarity=0.103 Sum_probs=47.1
Q ss_pred EEEe-cCCcHHHHHHHHHHcCCcceeeeeEee--eCCCcc------------eEE-Ee--ecCCCCCCeEEEEEecCCch
Q 023987 18 HLFY-CVECEELARKVAAQSDLITLQSINWRN--FADGWP------------NLY-IN--SAHDIRGQHVAFLASFSSPG 79 (274)
Q Consensus 18 ~i~~-~~~~~~la~~ia~~lg~~~~~~~~~~~--F~dGE~------------~~~-v~--~~~~v~g~~V~iiqs~~~~~ 79 (274)
.|++ ..+.-.+|..+|..|| .++.-+.-.. +.+++. +.. .. ....++|++|+||.......
T Consensus 55 ~Iv~v~~gGiplA~~lA~~L~-~p~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gk~VLIVDDiitTG 133 (178)
T PRK07322 55 VLVTPETKGIPLAHALSRRLG-KPYVVARKSRKPYMQDPIIQEVVSITTGKPQLLVLDGADAEKLKGKRVAIVDDVVSTG 133 (178)
T ss_pred EEEEeccCCHHHHHHHHHHHC-CCEEEEEEeCCCCCCCceEEEEEEEEeccceEEEecCccccccCCCEEEEEecccccc
Confidence 3443 4567799999999996 8875433221 122210 010 00 01246799999998776553
Q ss_pred hHHHHHHHHHhccccCCceEEE
Q 023987 80 VIFEQISVIYALPRLFVASFTL 101 (274)
Q Consensus 80 ~l~elll~~~a~r~~~a~~i~~ 101 (274)
..|. .+++.|++.|++.+.+
T Consensus 134 ~Tl~--aa~~~L~~~GA~~V~~ 153 (178)
T PRK07322 134 GTLT--ALERLVERAGGQVVAK 153 (178)
T ss_pred HHHH--HHHHHHHHcCCEEEEE
Confidence 3332 4566678889876543
No 154
>cd01518 RHOD_YceA Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YceA, Bacillus subtilis YbfQ, and similar uncharacterized proteins.
Probab=48.55 E-value=34 Score=25.28 Aligned_cols=33 Identities=9% Similarity=-0.129 Sum_probs=26.5
Q ss_pred CCCeEEEEeccccchHHHHHHHHHHHhCCCcEEEEE
Q 023987 229 AGCHVVIVDDLVQSGGTLIECQVLSYLLPAVLLKMC 264 (274)
Q Consensus 229 ~gk~vlIVDDIi~TG~Tl~~aa~~Lk~~GA~~V~~~ 264 (274)
+++++++++ .+|..-..++..|++.|.+.|+.+
T Consensus 60 ~~~~ivvyC---~~G~rs~~a~~~L~~~G~~~v~~l 92 (101)
T cd01518 60 KGKKVLMYC---TGGIRCEKASAYLKERGFKNVYQL 92 (101)
T ss_pred CCCEEEEEC---CCchhHHHHHHHHHHhCCcceeee
Confidence 567888885 588888889999999999877643
No 155
>KOG0814 consensus Glyoxylase [General function prediction only]
Probab=47.65 E-value=24 Score=30.14 Aligned_cols=45 Identities=16% Similarity=0.098 Sum_probs=38.2
Q ss_pred EeeeCCCCCCeEEEEeccccchHHHHHHHHHHHhCCCcEEEEEEecee
Q 023987 222 RIKEGNPAGCHVVIVDDLVQSGGTLIECQVLSYLLPAVLLKMCVSEFE 269 (274)
Q Consensus 222 ~~~~~~v~gk~vlIVDDIi~TG~Tl~~aa~~Lk~~GA~~V~~~~tH~~ 269 (274)
..+.+|.+.+..+|||-+..| ...=++++++.|-+-+|++-||.-
T Consensus 23 tYll~d~~~~~AviIDPV~et---~~RD~qlikdLgl~LiYa~NTH~H 67 (237)
T KOG0814|consen 23 TYLLGDHKTGKAVIIDPVLET---VSRDAQLIKDLGLDLIYALNTHVH 67 (237)
T ss_pred EEEeeeCCCCceEEecchhhc---ccchHHHHHhcCceeeeeecceee
Confidence 346789999999999999975 567788889999999999999963
No 156
>cd01528 RHOD_2 Member of the Rhodanese Homology Domain superfamily, subgroup 2. Subgroup 2 includes uncharacterized putative rhodanese-related domains.
Probab=46.18 E-value=39 Score=24.94 Aligned_cols=33 Identities=9% Similarity=0.015 Sum_probs=26.8
Q ss_pred CCCeEEEEeccccchHHHHHHHHHHHhCCCcEEEEE
Q 023987 229 AGCHVVIVDDLVQSGGTLIECQVLSYLLPAVLLKMC 264 (274)
Q Consensus 229 ~gk~vlIVDDIi~TG~Tl~~aa~~Lk~~GA~~V~~~ 264 (274)
+++.+++++ .+|.....++..|++.|-.+|+.+
T Consensus 57 ~~~~vv~~c---~~g~rs~~~~~~l~~~G~~~v~~l 89 (101)
T cd01528 57 PDKDIVVLC---HHGGRSMQVAQWLLRQGFENVYNL 89 (101)
T ss_pred CCCeEEEEe---CCCchHHHHHHHHHHcCCccEEEe
Confidence 467888885 478888999999999999887643
No 157
>cd01519 RHOD_HSP67B2 Member of the Rhodanese Homology Domain superfamily. This CD includes the heat shock protein 67B2 of Drosophila melanogaster and other similar proteins, many of which are uncharacterized.
Probab=45.57 E-value=36 Score=25.14 Aligned_cols=33 Identities=9% Similarity=-0.065 Sum_probs=27.4
Q ss_pred CCCeEEEEeccccchHHHHHHHHHHHhCCCcEEEEE
Q 023987 229 AGCHVVIVDDLVQSGGTLIECQVLSYLLPAVLLKMC 264 (274)
Q Consensus 229 ~gk~vlIVDDIi~TG~Tl~~aa~~Lk~~GA~~V~~~ 264 (274)
+++.|++++ .+|.+...++..|+..|-+.|+.+
T Consensus 65 ~~~~ivv~c---~~g~~s~~~~~~l~~~G~~~v~~~ 97 (106)
T cd01519 65 KDKELIFYC---KAGVRSKAAAELARSLGYENVGNY 97 (106)
T ss_pred CCCeEEEEC---CCcHHHHHHHHHHHHcCCccceec
Confidence 577888884 578888899999999999888765
No 158
>cd04814 PA_M28_1 PA_M28_1: Protease-associated (PA) domain, peptidase family M28, subfamily-1. A subfamily of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subfamilies, relatively little is known a
Probab=44.50 E-value=48 Score=27.06 Aligned_cols=41 Identities=17% Similarity=-0.025 Sum_probs=30.4
Q ss_pred CCCCCCeEEEEecccc-------chH-------HHHHHHHHHHhCCCcEEEEEEe
Q 023987 226 GNPAGCHVVIVDDLVQ-------SGG-------TLIECQVLSYLLPAVLLKMCVS 266 (274)
Q Consensus 226 ~~v~gk~vlIVDDIi~-------TG~-------Tl~~aa~~Lk~~GA~~V~~~~t 266 (274)
.|++||-|++..+-++ +|+ ++..=.+..+++||.-|.++.+
T Consensus 44 ~DVkGKIVlv~~g~P~~~~~~~~~~~~~~~~~~~~~~K~~~A~~~GA~gvIii~~ 98 (142)
T cd04814 44 LDVKGKVVVVLRNDPQGEPGAGDFGGKAMTYYGRWTYKYEEAARHGAAGVLIVHE 98 (142)
T ss_pred CCCCCcEEEEEcCCCCcccccccccccccccccCHHHHHHHHHHCCCcEEEEEeC
Confidence 4899999999876552 122 5777788889999998877653
No 159
>cd01532 4RHOD_Repeat_1 Member of the Rhodanese Homology Domain superfamily, repeat 1. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 1st repeat which does not contain the putative catalytic Cys residue.
Probab=43.18 E-value=35 Score=24.84 Aligned_cols=32 Identities=13% Similarity=0.086 Sum_probs=24.4
Q ss_pred CCCeEEEEeccccchHH--HHHHHHHHHhCCCcEEEE
Q 023987 229 AGCHVVIVDDLVQSGGT--LIECQVLSYLLPAVLLKM 263 (274)
Q Consensus 229 ~gk~vlIVDDIi~TG~T--l~~aa~~Lk~~GA~~V~~ 263 (274)
+++.++++. .+|.+ ...+++.|++.|-++|+.
T Consensus 49 ~~~~ivl~c---~~G~~~~s~~aa~~L~~~G~~~v~~ 82 (92)
T cd01532 49 RDTPIVVYG---EGGGEDLAPRAARRLSELGYTDVAL 82 (92)
T ss_pred CCCeEEEEe---CCCCchHHHHHHHHHHHcCccCEEE
Confidence 456788885 46654 578899999999998874
No 160
>PRK15482 transcriptional regulator MurR; Provisional
Probab=42.58 E-value=51 Score=29.52 Aligned_cols=80 Identities=11% Similarity=0.001 Sum_probs=49.0
Q ss_pred CCCCcEEEEecCCcHHHHHHHHHHcCCcceeeeeEeeeCCCcceEEEeecCCCCCCeEEEEEecCCc-hhHHHHHHHHHh
Q 023987 12 SQKKQVHLFYCVECEELARKVAAQSDLITLQSINWRNFADGWPNLYINSAHDIRGQHVAFLASFSSP-GVIFEQISVIYA 90 (274)
Q Consensus 12 ~~~~~~~i~~~~~~~~la~~ia~~lg~~~~~~~~~~~F~dGE~~~~v~~~~~v~g~~V~iiqs~~~~-~~l~elll~~~a 90 (274)
...+.+.+++..+|..+|+.++..|. .++. .+.-++|+.. .......+...||+|+=|.+.. .+++ .+++.
T Consensus 133 ~~A~~I~i~G~G~S~~~A~~l~~~l~--~~g~-~~~~~~d~~~--~~~~~~~~~~~Dv~i~iS~sg~t~~~~---~~~~~ 204 (285)
T PRK15482 133 SKAPFIQITGLGGSALVGRDLSFKLM--KIGY-RVACEADTHV--QATVSQALKKGDVQIAISYSGSKKEIV---LCAEA 204 (285)
T ss_pred HhCCeeEEEEeChhHHHHHHHHHHHH--hCCC-eeEEeccHhH--HHHHHhcCCCCCEEEEEeCCCCCHHHH---HHHHH
Confidence 34577889987888899999988873 3332 2232455521 1111234556799999887653 3444 45556
Q ss_pred ccccCCceE
Q 023987 91 LPRLFVASF 99 (274)
Q Consensus 91 ~r~~~a~~i 99 (274)
+++.|++-|
T Consensus 205 a~~~g~~iI 213 (285)
T PRK15482 205 ARKQGATVI 213 (285)
T ss_pred HHHCCCEEE
Confidence 777786533
No 161
>cd04820 PA_M28_1_1 PA_M28_1_1: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 1. A subgroup of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subgroups; relatively litt
Probab=42.08 E-value=54 Score=26.58 Aligned_cols=42 Identities=12% Similarity=-0.099 Sum_probs=31.6
Q ss_pred eCCCCCCeEEEEeccccch--------HHHHHHHHHHHhCCCcEEEEEEe
Q 023987 225 EGNPAGCHVVIVDDLVQSG--------GTLIECQVLSYLLPAVLLKMCVS 266 (274)
Q Consensus 225 ~~~v~gk~vlIVDDIi~TG--------~Tl~~aa~~Lk~~GA~~V~~~~t 266 (274)
..|++||-||+.....+.. ++...=.+.+.++||.-|.++..
T Consensus 45 ~iDVkGKIVlv~~g~p~~~~~~~~~~~~~~~~K~~~A~~~GA~aVIi~~d 94 (137)
T cd04820 45 GLDVKGKIVVVLSGGPAGIPSEEGAHAHSSNEKARYAAKAGAIGMITLTT 94 (137)
T ss_pred CCCCCCeEEEEEcCCCCccccccccccccHHHHHHHHHHCCCeEEEEEeC
Confidence 3489999998888776422 35667788889999998877653
No 162
>PRK11337 DNA-binding transcriptional repressor RpiR; Provisional
Probab=40.86 E-value=62 Score=29.03 Aligned_cols=84 Identities=15% Similarity=0.134 Sum_probs=50.9
Q ss_pred hCCCCcEEEEecCCcHHHHHHHHHHcCCcceeeeeEeeeCCCcceEEEeecCCCCCCeEEEEEecCCchhHHHHHHHHHh
Q 023987 11 KSQKKQVHLFYCVECEELARKVAAQSDLITLQSINWRNFADGWPNLYINSAHDIRGQHVAFLASFSSPGVIFEQISVIYA 90 (274)
Q Consensus 11 ~~~~~~~~i~~~~~~~~la~~ia~~lg~~~~~~~~~~~F~dGE~~~~v~~~~~v~g~~V~iiqs~~~~~~l~elll~~~a 90 (274)
....+.+.+|+..++..+|+.++.+|. .++ ....-++|.+. . ......+...|++|+-|.+.... ++..++..
T Consensus 137 i~~A~~I~i~G~G~S~~~A~~l~~~l~--~~g-~~~~~~~d~~~-~-~~~~~~~~~~Dl~I~iS~sG~t~--~~~~~~~~ 209 (292)
T PRK11337 137 FYQARQRDLYGAGGSAAIARDVQHKFL--RIG-VRCQAYDDAHI-M-LMSAALLQEGDVVLVVSHSGRTS--DVIEAVEL 209 (292)
T ss_pred HHcCCeEEEEEecHHHHHHHHHHHHHh--hCC-CeEEEcCCHHH-H-HHHHhcCCCCCEEEEEeCCCCCH--HHHHHHHH
Confidence 345577888887778889999988873 333 23334566532 1 11112344589999988765422 34456777
Q ss_pred ccccCCceEEEE
Q 023987 91 LPRLFVASFTLV 102 (274)
Q Consensus 91 ~r~~~a~~i~~v 102 (274)
+++.|++- .++
T Consensus 210 ak~~g~~i-i~I 220 (292)
T PRK11337 210 AKKNGAKI-ICI 220 (292)
T ss_pred HHHCCCeE-EEE
Confidence 88888744 444
No 163
>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type. This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.
Probab=40.15 E-value=57 Score=29.47 Aligned_cols=35 Identities=17% Similarity=0.113 Sum_probs=30.3
Q ss_pred CCCCCeEEEEeccccchHHHHHHHHHHHhCCCcEEEEEE
Q 023987 227 NPAGCHVVIVDDLVQSGGTLIECQVLSYLLPAVLLKMCV 265 (274)
Q Consensus 227 ~v~gk~vlIVDDIi~TG~Tl~~aa~~Lk~~GA~~V~~~~ 265 (274)
+++||+|+|+ =+||+-..++..|.+.|+++|.++-
T Consensus 122 ~~~~k~vlvl----GaGGaarai~~aL~~~G~~~i~I~n 156 (282)
T TIGR01809 122 PLAGFRGLVI----GAGGTSRAAVYALASLGVTDITVIN 156 (282)
T ss_pred ccCCceEEEE----cCcHHHHHHHHHHHHcCCCeEEEEe
Confidence 5788999865 6899999999999999999998764
No 164
>cd01527 RHOD_YgaP Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YgaP, and similar uncharacterized putative rhodanese-related sulfurtransferases.
Probab=40.11 E-value=46 Score=24.32 Aligned_cols=32 Identities=9% Similarity=-0.049 Sum_probs=25.2
Q ss_pred CCCeEEEEeccccchHHHHHHHHHHHhCCCcEEEE
Q 023987 229 AGCHVVIVDDLVQSGGTLIECQVLSYLLPAVLLKM 263 (274)
Q Consensus 229 ~gk~vlIVDDIi~TG~Tl~~aa~~Lk~~GA~~V~~ 263 (274)
+++.|++ +|.+|.+...++..|++.|...|+.
T Consensus 53 ~~~~iv~---~c~~g~~s~~~~~~L~~~g~~~v~~ 84 (99)
T cd01527 53 GANAIIF---HCRSGMRTQQNAERLAAISAGEAYV 84 (99)
T ss_pred CCCcEEE---EeCCCchHHHHHHHHHHcCCccEEE
Confidence 3566666 5889999999999999999886653
No 165
>PRK11557 putative DNA-binding transcriptional regulator; Provisional
Probab=39.82 E-value=70 Score=28.43 Aligned_cols=81 Identities=9% Similarity=-0.021 Sum_probs=50.3
Q ss_pred CCCCcEEEEecCCcHHHHHHHHHHcCCcceeeeeEeeeCCCcceEEEeecCCCCCCeEEEEEecCCc-hhHHHHHHHHHh
Q 023987 12 SQKKQVHLFYCVECEELARKVAAQSDLITLQSINWRNFADGWPNLYINSAHDIRGQHVAFLASFSSP-GVIFEQISVIYA 90 (274)
Q Consensus 12 ~~~~~~~i~~~~~~~~la~~ia~~lg~~~~~~~~~~~F~dGE~~~~v~~~~~v~g~~V~iiqs~~~~-~~l~elll~~~a 90 (274)
.+.+.+.+|+..++..+|+.++..|. .++... .-..|... .......+...||+|+-|.+.. .++++ ++..
T Consensus 126 ~~a~~I~i~G~G~s~~~A~~~~~~l~--~~g~~~-~~~~d~~~--~~~~~~~~~~~Dv~I~iS~sg~~~~~~~---~~~~ 197 (278)
T PRK11557 126 RSARRIILTGIGASGLVAQNFAWKLM--KIGINA-VAERDMHA--LLATVQALSPDDLLLAISYSGERRELNL---AADE 197 (278)
T ss_pred hcCCeEEEEecChhHHHHHHHHHHHh--hCCCeE-EEcCChHH--HHHHHHhCCCCCEEEEEcCCCCCHHHHH---HHHH
Confidence 45688999988888999999998884 444322 22344421 1111124555889998887654 34444 5567
Q ss_pred ccccCCceEE
Q 023987 91 LPRLFVASFT 100 (274)
Q Consensus 91 ~r~~~a~~i~ 100 (274)
+|+.|++-|.
T Consensus 198 ak~~ga~iI~ 207 (278)
T PRK11557 198 ALRVGAKVLA 207 (278)
T ss_pred HHHcCCCEEE
Confidence 7888875443
No 166
>cd01524 RHOD_Pyr_redox Member of the Rhodanese Homology Domain superfamily. Included in this CD are the Lactococcus lactis NADH oxidase, Bacillus cereus NADH dehydrogenase, and Bacteroides thetaiotaomicron pyridine nucleotide-disulphide oxidoreductase, and similar rhodanese-like domains found C-terminal of the pyridine nucleotide-disulphide oxidoreductase (Pyr-redox) domain and the Pyr-redox dimerization domain.
Probab=39.48 E-value=57 Score=23.47 Aligned_cols=31 Identities=6% Similarity=-0.174 Sum_probs=23.9
Q ss_pred CCeEEEEeccccchHHHHHHHHHHHhCCCcEEEEE
Q 023987 230 GCHVVIVDDLVQSGGTLIECQVLSYLLPAVLLKMC 264 (274)
Q Consensus 230 gk~vlIVDDIi~TG~Tl~~aa~~Lk~~GA~~V~~~ 264 (274)
+++++++. ++|.....++..|++.|- +|..+
T Consensus 51 ~~~vvl~c---~~g~~a~~~a~~L~~~G~-~v~~l 81 (90)
T cd01524 51 DKEIIVYC---AVGLRGYIAARILTQNGF-KVKNL 81 (90)
T ss_pred CCcEEEEc---CCChhHHHHHHHHHHCCC-CEEEe
Confidence 46788874 568888889999999998 66443
No 167
>PRK14093 UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate--D-alanyl-D-alanine ligase; Provisional
Probab=39.36 E-value=3.4e+02 Score=26.35 Aligned_cols=108 Identities=10% Similarity=-0.005 Sum_probs=59.3
Q ss_pred HHHHHHHHHcCCcceeeee--Eeee--CCCcceEEEeecCCCCCCeEEEEEe-c-CCchhHHHHHHHHHhccccCCceEE
Q 023987 27 ELARKVAAQSDLITLQSIN--WRNF--ADGWPNLYINSAHDIRGQHVAFLAS-F-SSPGVIFEQISVIYALPRLFVASFT 100 (274)
Q Consensus 27 ~la~~ia~~lg~~~~~~~~--~~~F--~dGE~~~~v~~~~~v~g~~V~iiqs-~-~~~~~l~elll~~~a~r~~~a~~i~ 100 (274)
-.|-.++..+| +++..+. +.+| +.|-.+ .++.. ..+..+.||.. . +.|+.+-..|-.+..+......|++
T Consensus 297 laAia~a~~lG-i~~~~i~~~l~~~~~~~gR~~-~~r~~--~~~~~~~iIDDsYahnP~s~~aaL~~l~~~~~~~~~r~i 372 (479)
T PRK14093 297 LAVLAAAELAG-ADLALAALALSQVQPAAGRGV-RHTLE--VGGGEATLIDESYNANPASMAAALGVLGRAPVGPQGRRI 372 (479)
T ss_pred HHHHHHHHHcC-CCHHHHHHHHHhCCCcCCcce-EEEee--cCCCCEEEEECCCCCCHHHHHHHHHHHHhhhccCCCCEE
Confidence 45667788887 8876554 5666 444211 12211 11334566654 3 4577777766655554321123555
Q ss_pred EEeec--CCCCCccccccCCCcccHHHHHHHHhcCCCCCCCCCEEEEEeCCch
Q 023987 101 LVLPF--FPTGSFERMEEEGDVATAFTMARILSNIPTSRGGPTSLVIYDIHAL 151 (274)
Q Consensus 101 ~viPY--~~ysRqdr~~~~g~~~~a~~~a~ll~~~~~~~~g~d~ii~vdlH~~ 151 (274)
+|+.= --|+|.++.+ +.+++.+.. .++|.|+.+..+..
T Consensus 373 ~V~G~m~elg~~~~~~h--------~~~~~~~~~-----~~~d~v~~~G~~~~ 412 (479)
T PRK14093 373 AVLGDMLELGPRGPELH--------RGLAEAIRA-----NAIDLVFCCGPLMR 412 (479)
T ss_pred EEECChHHcCcHHHHHH--------HHHHHHHHH-----cCCCEEEEEchhHH
Confidence 55532 2344433322 367787764 47899999987653
No 168
>PRK05320 rhodanese superfamily protein; Provisional
Probab=38.44 E-value=55 Score=29.30 Aligned_cols=33 Identities=15% Similarity=-0.040 Sum_probs=29.2
Q ss_pred CCCCeEEEEeccccchHHHHHHHHHHHhCCCcEEEE
Q 023987 228 PAGCHVVIVDDLVQSGGTLIECQVLSYLLPAVLLKM 263 (274)
Q Consensus 228 v~gk~vlIVDDIi~TG~Tl~~aa~~Lk~~GA~~V~~ 263 (274)
+++|.|+++ |++|..-..|+..|++.|-+.|+-
T Consensus 173 ~kdk~Ivvy---C~~G~Rs~~Aa~~L~~~Gf~~V~~ 205 (257)
T PRK05320 173 LAGKTVVSF---CTGGIRCEKAAIHMQEVGIDNVYQ 205 (257)
T ss_pred cCCCeEEEE---CCCCHHHHHHHHHHHHcCCcceEE
Confidence 478888888 999999999999999999988863
No 169
>KOG1448 consensus Ribose-phosphate pyrophosphokinase [Nucleotide transport and metabolism; Amino acid transport and metabolism]
Probab=38.04 E-value=1.5e+02 Score=27.33 Aligned_cols=97 Identities=8% Similarity=0.070 Sum_probs=56.8
Q ss_pred HhhCCCCcEEEEecC-CcHHHHHHHHHHcCCcceeeee-EeeeCCCcceEEEeecCCCCCCeEEEEEecCCc-hhHHHHH
Q 023987 9 AKKSQKKQVHLFYCV-ECEELARKVAAQSDLITLQSIN-WRNFADGWPNLYINSAHDIRGQHVAFLASFSSP-GVIFEQI 85 (274)
Q Consensus 9 ~~~~~~~~~~i~~~~-~~~~la~~ia~~lg~~~~~~~~-~~~F~dGE~~~~v~~~~~v~g~~V~iiqs~~~~-~~l~ell 85 (274)
.+...+.+..+.|-. .--.-+..+|..|. .....+. .++-.+ |...+..+-.+|+|+.+++|..+.+. ..+.+
T Consensus 157 ~~~~~~~~~vivSPdaGgaKR~~s~ad~l~-~~fali~ker~k~~-~v~~~m~LVGDv~gkvailVDDm~dt~GTl~~-- 232 (316)
T KOG1448|consen 157 ENIPDSENAVIVSPDAGGAKRVTSLADRLN-LDFALIHKERRKAN-EVDIRMVLVGDVKGKVAILVDDMADTCGTLIK-- 232 (316)
T ss_pred hhCCCccceEEECCCcchhhhhHHHHHhhc-chhhhhhhhhhccc-ccceEEEEEeccCCcEEEEecccccccchHHH--
Confidence 333345666665422 22355566677774 5443322 233333 22323334579999999999987543 34433
Q ss_pred HHHHhccccCCceEEEEeecCCCCC
Q 023987 86 SVIYALPRLFVASFTLVLPFFPTGS 110 (274)
Q Consensus 86 l~~~a~r~~~a~~i~~viPY~~ysR 110 (274)
-++.|.+.||++|.++.+..=++.
T Consensus 233 -aa~~L~~~GA~kV~a~~THgVfs~ 256 (316)
T KOG1448|consen 233 -AADKLLEHGAKKVYAIVTHGVFSG 256 (316)
T ss_pred -HHHHHHhcCCceEEEEEcceeccc
Confidence 345566699999999998865544
No 170
>PLN02962 hydroxyacylglutathione hydrolase
Probab=38.02 E-value=48 Score=29.58 Aligned_cols=39 Identities=13% Similarity=0.011 Sum_probs=28.2
Q ss_pred CCCCeEEEEeccccchHHHHHHHHHHHhCCCcEEEEEEecee
Q 023987 228 PAGCHVVIVDDLVQSGGTLIECQVLSYLLPAVLLKMCVSEFE 269 (274)
Q Consensus 228 v~gk~vlIVDDIi~TG~Tl~~aa~~Lk~~GA~~V~~~~tH~~ 269 (274)
..++.++|||--- .......+.|++.|.+-..++.||+-
T Consensus 33 ~~~~~avlIDP~~---~~~~~~l~~l~~~g~~i~~Il~TH~H 71 (251)
T PLN02962 33 HPDKPALLIDPVD---KTVDRDLSLVKELGLKLIYAMNTHVH 71 (251)
T ss_pred CCCCEEEEECCCC---CcHHHHHHHHHHCCCeeEEEEcCCCC
Confidence 3567899999421 23445567888889888899999974
No 171
>PF12641 Flavodoxin_3: Flavodoxin domain
Probab=37.84 E-value=2.1e+02 Score=23.62 Aligned_cols=12 Identities=17% Similarity=0.277 Sum_probs=11.0
Q ss_pred HHHHHHHHHHcC
Q 023987 26 EELARKVAAQSD 37 (274)
Q Consensus 26 ~~la~~ia~~lg 37 (274)
..+|+.|++.|+
T Consensus 12 kkvA~aI~~~l~ 23 (160)
T PF12641_consen 12 KKVAEAIAEALG 23 (160)
T ss_pred HHHHHHHHHHCC
Confidence 589999999997
No 172
>TIGR01744 XPRTase xanthine phosphoribosyltransferase. This model represent a xanthine-specific phosphoribosyltransferase of Bacillus subtilis and closely related proteins from other species, mostly from other Gram-positive bacteria. The adjacent gene is a xanthine transporter; B. subtilis can import xanthine for the purine salvage pathway or for catabolism to obtain nitrogen.
Probab=36.92 E-value=2.2e+02 Score=24.17 Aligned_cols=72 Identities=4% Similarity=-0.048 Sum_probs=42.3
Q ss_pred cCCcHHHHHHHHHHcCCcceeeeeEee-eC---------------CCcceEEEeecCCCCCCeEEEEEecCCc-hhHHHH
Q 023987 22 CVECEELARKVAAQSDLITLQSINWRN-FA---------------DGWPNLYINSAHDIRGQHVAFLASFSSP-GVIFEQ 84 (274)
Q Consensus 22 ~~~~~~la~~ia~~lg~~~~~~~~~~~-F~---------------dGE~~~~v~~~~~v~g~~V~iiqs~~~~-~~l~el 84 (274)
....-.+|..+|..|| .++.-+.-.. .| .++..++++-..--+|++|+||...-.. ..+.+
T Consensus 58 ea~Gi~la~~lA~~Lg-~p~v~vRK~~k~~~~~~~~~~~~~s~~~~~~~~l~i~~~~l~~G~rVLIVDDvvtTGgT~~a- 135 (191)
T TIGR01744 58 EASGIAPAIMTGLKLG-VPVVFARKKKPLTLTDNLLTASVHSFTKQTTSTVAVSGEFLSDQDRVLIIDDFLANGQAAHG- 135 (191)
T ss_pred ccccHHHHHHHHHHHC-CCEEEEEeCCCCCCCCcceEEEEEEeecCccEEEEEEHHhCCCcCEEEEEEehhccChHHHH-
Confidence 4556799999999996 8875554431 22 1222223331112378999999875433 33333
Q ss_pred HHHHHhccccCCc
Q 023987 85 ISVIYALPRLFVA 97 (274)
Q Consensus 85 ll~~~a~r~~~a~ 97 (274)
+++.|+++|++
T Consensus 136 --~~~ll~~aGa~ 146 (191)
T TIGR01744 136 --LVDIAKQAGAK 146 (191)
T ss_pred --HHHHHHHCCCE
Confidence 55667777774
No 173
>cd05710 SIS_1 A subgroup of the SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=36.89 E-value=78 Score=24.38 Aligned_cols=80 Identities=9% Similarity=-0.116 Sum_probs=43.8
Q ss_pred EEEEecCCcHHHHHHHHHHcCCcceeeeeEeeeCCCcceEEEeecCCCCCCeEEEEEecCCc-hhHHHHHHHHHhccccC
Q 023987 17 VHLFYCVECEELARKVAAQSDLITLQSINWRNFADGWPNLYINSAHDIRGQHVAFLASFSSP-GVIFEQISVIYALPRLF 95 (274)
Q Consensus 17 ~~i~~~~~~~~la~~ia~~lg~~~~~~~~~~~F~dGE~~~~v~~~~~v~g~~V~iiqs~~~~-~~l~elll~~~a~r~~~ 95 (274)
+.+++.-+|...|.....++ .++......-+.+.|.. ... ...+...|++|+=|.+.. .+++ ..++.+|+.|
T Consensus 2 I~i~G~G~S~~~A~~~~~~l--~~~~~~~~~~~~~~~~~-~~~-~~~~~~~dl~I~iS~SG~t~~~~---~~~~~a~~~g 74 (120)
T cd05710 2 VFFVGCGGSLADMYPAKYFL--KKESKLPVFVYNAAEFL-HTG-PKRLTEKSVVILASHSGNTKETV---AAAKFAKEKG 74 (120)
T ss_pred EEEEEecHHHHHHhHHHHHH--HHhcCCceEEEcHHHHh-hcC-cccCCCCcEEEEEeCCCCChHHH---HHHHHHHHcC
Confidence 45555455666666666665 24434555566666531 111 224555788888776543 3444 4556667777
Q ss_pred CceEEEEee
Q 023987 96 VASFTLVLP 104 (274)
Q Consensus 96 a~~i~~viP 104 (274)
+ ++.++-.
T Consensus 75 ~-~vi~iT~ 82 (120)
T cd05710 75 A-TVIGLTD 82 (120)
T ss_pred C-eEEEEEC
Confidence 6 4444443
No 174
>PF07931 CPT: Chloramphenicol phosphotransferase-like protein; InterPro: IPR012853 The members of this family are all similar to chloramphenicol 3-O phosphotransferase (CPT, Q56148 from SWISSPROT) expressed by Streptomyces venezuelae. Chloramphenicol (Cm) is a metabolite produced by this bacterium that can inhibit ribosomal peptidyl transferase activity and therefore protein production. By transferring a phosphate group to the C-3 hydroxyl group of Cm, CPT inactivates this potentially lethal metabolite [, ]. ; GO: 0005524 ATP binding, 0016740 transferase activity; PDB: 1QHX_A 1QHN_A 1GRR_A 1QHY_A 1QHS_A 1GRQ_A.
Probab=36.41 E-value=41 Score=28.30 Aligned_cols=21 Identities=38% Similarity=0.433 Sum_probs=15.2
Q ss_pred EEEeccccchHHHHHHH-HHHH
Q 023987 234 VIVDDLVQSGGTLIECQ-VLSY 254 (274)
Q Consensus 234 lIVDDIi~TG~Tl~~aa-~~Lk 254 (274)
+||||++.++..+.... +.|.
T Consensus 86 VIvD~v~~~~~~l~d~l~~~L~ 107 (174)
T PF07931_consen 86 VIVDDVFLGPRWLQDCLRRLLA 107 (174)
T ss_dssp EEEEE--TTTHHHHHHHHHHHT
T ss_pred EEEecCccCcHHHHHHHHHHhC
Confidence 68899999999888877 5664
No 175
>cd01447 Polysulfide_ST Polysulfide-sulfurtransferase - Rhodanese Homology Domain. This domain is believed to serve as a polysulfide binding and transferase domain in anaerobic gram-negative bacteria, functioning in oxidative phosphorylation with polysulfide-sulfur as a terminal electron acceptor. The active site contains the same conserved cysteine that is the catalytic residue in other Rhodanese Homology Domain proteins.
Probab=36.41 E-value=38 Score=24.77 Aligned_cols=32 Identities=9% Similarity=-0.233 Sum_probs=25.7
Q ss_pred CCCeEEEEeccccchHHHHHHHHHHHhCCCcEEEE
Q 023987 229 AGCHVVIVDDLVQSGGTLIECQVLSYLLPAVLLKM 263 (274)
Q Consensus 229 ~gk~vlIVDDIi~TG~Tl~~aa~~Lk~~GA~~V~~ 263 (274)
+++.+++++ .+|.....++..|+..|...|+.
T Consensus 60 ~~~~ivv~c---~~g~~s~~~~~~l~~~G~~~v~~ 91 (103)
T cd01447 60 EDKPFVFYC---ASGWRSALAGKTLQDMGLKPVYN 91 (103)
T ss_pred CCCeEEEEc---CCCCcHHHHHHHHHHcChHHhEe
Confidence 467888886 46777788999999999887764
No 176
>TIGR02981 phageshock_pspE phage shock operon rhodanese PspE. Members of this very narrowly defined protein family are proteins active as rhodanese (EC 2.8.1.1) and found in the extended variants of the phage shock protein (psp operon) in Escherichia coli and a few closely related species. Note that the designation phage shock protein PspE has been applied, incorrectly, in many instances where the genome lacks the phage shock regulon entirely.
Probab=36.18 E-value=77 Score=23.92 Aligned_cols=31 Identities=6% Similarity=-0.107 Sum_probs=26.1
Q ss_pred CCeEEEEeccccchHHHHHHHHHHHhCCCcEEEE
Q 023987 230 GCHVVIVDDLVQSGGTLIECQVLSYLLPAVLLKM 263 (274)
Q Consensus 230 gk~vlIVDDIi~TG~Tl~~aa~~Lk~~GA~~V~~ 263 (274)
++.++++ |.+|.....++..|++.|-..|+.
T Consensus 58 ~~~vvly---C~~G~rS~~aa~~L~~~G~~~v~~ 88 (101)
T TIGR02981 58 NDTVKLY---CNAGRQSGMAKDILLDMGYTHAEN 88 (101)
T ss_pred CCeEEEE---eCCCHHHHHHHHHHHHcCCCeEEe
Confidence 4566666 788999999999999999998875
No 177
>PLN02160 thiosulfate sulfurtransferase
Probab=36.13 E-value=58 Score=25.97 Aligned_cols=33 Identities=9% Similarity=0.007 Sum_probs=27.1
Q ss_pred CCCeEEEEeccccchHHHHHHHHHHHhCCCcEEEEE
Q 023987 229 AGCHVVIVDDLVQSGGTLIECQVLSYLLPAVLLKMC 264 (274)
Q Consensus 229 ~gk~vlIVDDIi~TG~Tl~~aa~~Lk~~GA~~V~~~ 264 (274)
++++++++ |.+|.+-..+++.|++.|.+.|+.+
T Consensus 80 ~~~~Iivy---C~sG~RS~~Aa~~L~~~G~~~v~~l 112 (136)
T PLN02160 80 PADDILVG---CQSGARSLKATTELVAAGYKKVRNK 112 (136)
T ss_pred CCCcEEEE---CCCcHHHHHHHHHHHHcCCCCeeec
Confidence 45677776 7899999999999999999887643
No 178
>cd01525 RHOD_Kc Member of the Rhodanese Homology Domain superfamily. Included in this CD are the rhodanese-like domains found C-terminal of the serine/threonine protein kinases catalytic (S_TKc) domain and the Tre-2, BUB2p, Cdc16p (TBC) domain. The putative active site Cys residue is not present in this CD.
Probab=35.27 E-value=68 Score=23.57 Aligned_cols=32 Identities=16% Similarity=0.009 Sum_probs=25.4
Q ss_pred CCeEEEEeccccchHHHHHHHHHHHhCCCcEEEEE
Q 023987 230 GCHVVIVDDLVQSGGTLIECQVLSYLLPAVLLKMC 264 (274)
Q Consensus 230 gk~vlIVDDIi~TG~Tl~~aa~~Lk~~GA~~V~~~ 264 (274)
++.|++++ ++|.+...++..|+..|...|+.+
T Consensus 65 ~~~vv~~c---~~g~~s~~~a~~L~~~G~~~v~~l 96 (105)
T cd01525 65 GKIIVIVS---HSHKHAALFAAFLVKCGVPRVCIL 96 (105)
T ss_pred CCeEEEEe---CCCccHHHHHHHHHHcCCCCEEEE
Confidence 66788865 677787888899999999988743
No 179
>PRK00676 hemA glutamyl-tRNA reductase; Validated
Probab=34.56 E-value=79 Score=29.64 Aligned_cols=36 Identities=3% Similarity=-0.006 Sum_probs=31.5
Q ss_pred eCCCCCCeEEEEeccccchHHHHHHHHHHHhCCCcEEEEE
Q 023987 225 EGNPAGCHVVIVDDLVQSGGTLIECQVLSYLLPAVLLKMC 264 (274)
Q Consensus 225 ~~~v~gk~vlIVDDIi~TG~Tl~~aa~~Lk~~GA~~V~~~ 264 (274)
.++++||+|+|| -+|.+-..+++.|.+.|+++|.++
T Consensus 169 ~~~l~~k~vLvI----GaGem~~l~a~~L~~~g~~~i~v~ 204 (338)
T PRK00676 169 RQKSKKASLLFI----GYSEINRKVAYYLQRQGYSRITFC 204 (338)
T ss_pred hCCccCCEEEEE----cccHHHHHHHHHHHHcCCCEEEEE
Confidence 378999999986 589999999999999999888775
No 180
>TIGR00393 kpsF KpsF/GutQ family protein. This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli.
Probab=34.52 E-value=1.2e+02 Score=26.52 Aligned_cols=79 Identities=13% Similarity=0.080 Sum_probs=46.4
Q ss_pred cEEEEecCCcHHHHHHHHHHcCCcceeeeeEeeeCCCcceEEEeecCCCCCCeEEEEEecCCchhHHHHHHHHHhccccC
Q 023987 16 QVHLFYCVECEELARKVAAQSDLITLQSINWRNFADGWPNLYINSAHDIRGQHVAFLASFSSPGVIFEQISVIYALPRLF 95 (274)
Q Consensus 16 ~~~i~~~~~~~~la~~ia~~lg~~~~~~~~~~~F~dGE~~~~v~~~~~v~g~~V~iiqs~~~~~~l~elll~~~a~r~~~ 95 (274)
.+.+|+..+|..+|+..+.+|- .++.. +.-+.|.+. .......+...|++|+-|.+.. --+++.++..||+.|
T Consensus 2 rI~i~G~G~S~~~a~~~~~~l~--~~g~~-~~~~~~~~~--~~~~~~~~~~~d~~i~iS~sG~--t~~~~~~~~~a~~~g 74 (268)
T TIGR00393 2 KLVIVGIGKSGLIGKKIVATFA--STGTP-SFFLHPTEA--MHGDLGMVEPNDVVLMISYSGE--SLELLNLIPHLKRLS 74 (268)
T ss_pred cEEEEecChHHHHHHHHHHHHH--hcCCc-eEEeCHhHH--hhcccCCCCCCCEEEEEeCCCC--CHHHHHHHHHHHHcC
Confidence 4567776677888999888872 34332 222455542 1111234556889998887653 223344566777777
Q ss_pred CceEEE
Q 023987 96 VASFTL 101 (274)
Q Consensus 96 a~~i~~ 101 (274)
++-|.+
T Consensus 75 ~~ii~i 80 (268)
T TIGR00393 75 HKIIAF 80 (268)
T ss_pred CcEEEE
Confidence 654443
No 181
>PF14502 HTH_41: Helix-turn-helix domain
Probab=34.51 E-value=46 Score=22.03 Aligned_cols=22 Identities=23% Similarity=0.096 Sum_probs=18.6
Q ss_pred cchHHHHHHHHHHHhCCCcEEE
Q 023987 241 QSGGTLIECQVLSYLLPAVLLK 262 (274)
Q Consensus 241 ~TG~Tl~~aa~~Lk~~GA~~V~ 262 (274)
-+=||++.|.+.|++.||-.+.
T Consensus 18 vs~GtiQ~Alk~Le~~gaI~Le 39 (48)
T PF14502_consen 18 VSRGTIQNALKFLEENGAIKLE 39 (48)
T ss_pred cchhHHHHHHHHHHHCCcEEee
Confidence 4668999999999999987653
No 182
>COG1926 Predicted phosphoribosyltransferases [General function prediction only]
Probab=34.04 E-value=77 Score=27.76 Aligned_cols=90 Identities=13% Similarity=0.174 Sum_probs=58.4
Q ss_pred CCCCCCeEEEEEecCCchhHHHHHHHHHhccccCCceEEEEeecCCCCCccccccCCCcccHHHHHHHHhcCCCCCCCCC
Q 023987 62 HDIRGQHVAFLASFSSPGVIFEQISVIYALPRLFVASFTLVLPFFPTGSFERMEEEGDVATAFTMARILSNIPTSRGGPT 141 (274)
Q Consensus 62 ~~v~g~~V~iiqs~~~~~~l~elll~~~a~r~~~a~~i~~viPY~~ysRqdr~~~~g~~~~a~~~a~ll~~~~~~~~g~d 141 (274)
.+.+|++|+++.....-..-|- ..+.+||..+++.|.+..|-.|- ..++.|.+ -+|
T Consensus 120 ~~~~g~~VIlVDDGiATGatm~--aAi~~~r~~~~~~IviAVPV~p~----------------~a~~~l~s------~~D 175 (220)
T COG1926 120 PSLKGRTVILVDDGIATGATMK--AAVRALRAKGPKEIVIAVPVAPE----------------DAAAELES------EAD 175 (220)
T ss_pred CCCCCCEEEEEeCCcchhHHHH--HHHHHHHhcCCceEEEEcccCCH----------------HHHHHHHh------hcC
Confidence 4677899999986544334443 56889999999999998886553 45567764 478
Q ss_pred EEEEEeCCch--hhhcccCCCCcccccchHHHHHHHHhcC
Q 023987 142 SLVIYDIHAL--QERFYFSDHVLPLFETGIPLLKQRLHQL 179 (274)
Q Consensus 142 ~ii~vdlH~~--~~~~ff~~~~~~l~~~~~~~la~~l~~~ 179 (274)
.++++..-.. ...-||. .... -..++..++|.+.
T Consensus 176 ~vvc~~~P~~F~AVg~~Y~-dF~q---~sdeEV~~lL~~a 211 (220)
T COG1926 176 EVVCLYMPAPFEAVGEFYR-DFRQ---VSDEEVRALLRRA 211 (220)
T ss_pred eEEEEcCCccHHHHHHHHH-HHhh---cCHHHHHHHHHhc
Confidence 9999876442 1222222 1111 1456777777664
No 183
>cd01533 4RHOD_Repeat_2 Member of the Rhodanese Homology Domain superfamily, repeat 2. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 2nd repeat which does contain the putative catalytic Cys residue.
Probab=33.54 E-value=77 Score=23.68 Aligned_cols=32 Identities=6% Similarity=-0.179 Sum_probs=25.1
Q ss_pred CCCeEEEEeccccchHHHHHHHHHHHhCCCcE-EEE
Q 023987 229 AGCHVVIVDDLVQSGGTLIECQVLSYLLPAVL-LKM 263 (274)
Q Consensus 229 ~gk~vlIVDDIi~TG~Tl~~aa~~Lk~~GA~~-V~~ 263 (274)
+++.++++ |.+|..-..++..|+..|-+. |+.
T Consensus 65 ~~~~ivv~---C~~G~rs~~a~~~L~~~G~~~~v~~ 97 (109)
T cd01533 65 PRTPIVVN---CAGRTRSIIGAQSLINAGLPNPVAA 97 (109)
T ss_pred CCCeEEEE---CCCCchHHHHHHHHHHCCCCcceeE
Confidence 45677887 678888788999999999876 543
No 184
>COG2065 PyrR Pyrimidine operon attenuation protein/uracil phosphoribosyltransferase [Nucleotide transport and metabolism]
Probab=33.42 E-value=1.6e+02 Score=24.92 Aligned_cols=70 Identities=16% Similarity=0.200 Sum_probs=45.7
Q ss_pred hhHHHhhCCCCcEEEEec-CCcHHHHHHHHHHcCCc-----ceeeeeEeeeCCCcceEE--------EeecCCCCCCeEE
Q 023987 5 REIKAKKSQKKQVHLFYC-VECEELARKVAAQSDLI-----TLQSINWRNFADGWPNLY--------INSAHDIRGQHVA 70 (274)
Q Consensus 5 ~~~~~~~~~~~~~~i~~~-~~~~~la~~ia~~lg~~-----~~~~~~~~~F~dGE~~~~--------v~~~~~v~g~~V~ 70 (274)
.|+-++++.-.++.+..- +.--+||++|++.++.+ +++.+.+.=|-|-=.... -.++.++.|+.|+
T Consensus 21 ~eIiErnk~~~~~vlvGIktrGv~lA~rl~~~i~~~Eg~~vp~g~lDIt~yRDDl~~~~~~~p~~~~t~~~~di~~k~VI 100 (179)
T COG2065 21 HEIIERNKGLDNLVLVGIKTRGVPLAERLAERIEELEGIEVPVGELDITLYRDDLTQKGPLRPQAKTTILPFDITGKRVI 100 (179)
T ss_pred HHHHHHhCCCCceEEEeEecCCHHHHHHHHHHHHHHhCCCCCeeeEEeEEeechhhhcCccCCcccCccCcccccCCEEE
Confidence 466667666667776653 44669999999988643 478888888877521111 0134567788888
Q ss_pred EEEe
Q 023987 71 FLAS 74 (274)
Q Consensus 71 iiqs 74 (274)
+|..
T Consensus 101 LVDD 104 (179)
T COG2065 101 LVDD 104 (179)
T ss_pred EEee
Confidence 8875
No 185
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=32.80 E-value=2e+02 Score=21.19 Aligned_cols=74 Identities=9% Similarity=-0.058 Sum_probs=42.8
Q ss_pred EEEEec-CCcHHHHHHHHHHcCCcceeeeeEeeeCCCcceEEEeecCCCCCCeEEEEEecCCchhHHHHHHHHHhccccC
Q 023987 17 VHLFYC-VECEELARKVAAQSDLITLQSINWRNFADGWPNLYINSAHDIRGQHVAFLASFSSPGVIFEQISVIYALPRLF 95 (274)
Q Consensus 17 ~~i~~~-~~~~~la~~ia~~lg~~~~~~~~~~~F~dGE~~~~v~~~~~v~g~~V~iiqs~~~~~~l~elll~~~a~r~~~ 95 (274)
+.|+.| ..+..--+++.+..| .+.... .=.+|...-.-+++..+...|++|+.+-+-..+.|. .+.+.|++.+
T Consensus 2 vliVGG~~~~~~~~~~~~~~~G-~~~~~h---g~~~~~~~~~~~l~~~i~~aD~VIv~t~~vsH~~~~--~vk~~akk~~ 75 (97)
T PF10087_consen 2 VLIVGGREDRERRYKRILEKYG-GKLIHH---GRDGGDEKKASRLPSKIKKADLVIVFTDYVSHNAMW--KVKKAAKKYG 75 (97)
T ss_pred EEEEcCCcccHHHHHHHHHHcC-CEEEEE---ecCCCCccchhHHHHhcCCCCEEEEEeCCcChHHHH--HHHHHHHHcC
Confidence 456666 355566666777786 443222 113332211113667888889999987554555555 5567777765
Q ss_pred C
Q 023987 96 V 96 (274)
Q Consensus 96 a 96 (274)
.
T Consensus 76 i 76 (97)
T PF10087_consen 76 I 76 (97)
T ss_pred C
Confidence 4
No 186
>TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ. This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr
Probab=32.74 E-value=2.5e+02 Score=24.12 Aligned_cols=70 Identities=20% Similarity=0.132 Sum_probs=41.5
Q ss_pred cHHHHHHHHhcCCCCCCCCCEEEEEeCCchhh-hcccCCCCcccccchHHHHHHHHhcCCCCCCeEEEecCCChHHHHHH
Q 023987 122 TAFTMARILSNIPTSRGGPTSLVIYDIHALQE-RFYFSDHVLPLFETGIPLLKQRLHQLPDANNIVIAFPDDGAWKRFHK 200 (274)
Q Consensus 122 ~a~~~a~ll~~~~~~~~g~d~ii~vdlH~~~~-~~ff~~~~~~l~~~~~~~la~~l~~~~~~~~~viV~pd~G~~~ra~~ 200 (274)
..-.+|+.++. .|++.++.+|+..... .+. | . .+.+.+.+. .+.++.++-.......+..
T Consensus 31 dp~~~a~~~~~-----~g~~~i~i~dl~~~~~~~~~-n----------~-~~~~~i~~~--~~~pv~~~ggi~~~~d~~~ 91 (232)
T TIGR03572 31 DPVNAARIYNA-----KGADELIVLDIDASKRGREP-L----------F-ELISNLAEE--CFMPLTVGGGIRSLEDAKK 91 (232)
T ss_pred CHHHHHHHHHH-----cCCCEEEEEeCCCcccCCCC-C----------H-HHHHHHHHh--CCCCEEEECCCCCHHHHHH
Confidence 44567888875 5999999999987432 222 2 1 223333332 3456777776667777666
Q ss_pred hhc-CCCeEEE
Q 023987 201 MLD-HFPTVVC 210 (274)
Q Consensus 201 ~a~-~~~~~~~ 210 (274)
+.. +++...+
T Consensus 92 ~~~~G~~~vil 102 (232)
T TIGR03572 92 LLSLGADKVSI 102 (232)
T ss_pred HHHcCCCEEEE
Confidence 543 4544333
No 187
>cd01526 RHOD_ThiF Member of the Rhodanese Homology Domain superfamily. This CD includes several putative molybdopterin synthase sulfurylases including the molybdenum cofactor biosynthetic protein (CnxF) of Aspergillus nidulans and the molybdenum cofactor synthesis protein 3 (MOCS3) of Homo sapiens. These rhodanese-like domains are found C-terminal of the ThiF and MoeZ_MoeB domains.
Probab=32.61 E-value=62 Score=24.91 Aligned_cols=33 Identities=9% Similarity=0.012 Sum_probs=26.3
Q ss_pred CCCeEEEEeccccchHHHHHHHHHHHhCCC-cEEEEE
Q 023987 229 AGCHVVIVDDLVQSGGTLIECQVLSYLLPA-VLLKMC 264 (274)
Q Consensus 229 ~gk~vlIVDDIi~TG~Tl~~aa~~Lk~~GA-~~V~~~ 264 (274)
+++.++++ |.+|..-..+++.|++.|- +.|+.+
T Consensus 71 ~~~~ivv~---C~~G~rs~~aa~~L~~~G~~~~v~~l 104 (122)
T cd01526 71 KDSPIYVV---CRRGNDSQTAVRKLKELGLERFVRDI 104 (122)
T ss_pred CCCcEEEE---CCCCCcHHHHHHHHHHcCCccceeee
Confidence 46778887 5688888889999999999 667654
No 188
>cd05005 SIS_PHI Hexulose-6-phosphate isomerase (PHI). PHI is a member of the SIS (Sugar ISomerase domain) superfamily. In the ribulose monophosphate pathway of formaldehyde fixation, hexulose-6-phosphate synthase catalyzes the condensation of ribulose-5-phosphate with formadelhyde to become hexulose-6-phosphate, which is then isomerized to fructose-6-phosphate by PHI.
Probab=32.60 E-value=2.8e+02 Score=22.74 Aligned_cols=78 Identities=10% Similarity=-0.000 Sum_probs=47.7
Q ss_pred HhhCCCCcEEEEecCCcHHHHHHHHHHcCCcceeeeeEeeeCCCcceEEEeecCCCCCCeEEEEEecCCc-hhHHHHHHH
Q 023987 9 AKKSQKKQVHLFYCVECEELARKVAAQSDLITLQSINWRNFADGWPNLYINSAHDIRGQHVAFLASFSSP-GVIFEQISV 87 (274)
Q Consensus 9 ~~~~~~~~~~i~~~~~~~~la~~ia~~lg~~~~~~~~~~~F~dGE~~~~v~~~~~v~g~~V~iiqs~~~~-~~l~elll~ 87 (274)
+...+.+.+.+++..+|..+|+.++.+|- .++ ..+.-.+|-. ......+|++|+-|.+.. .+++ .+
T Consensus 28 ~~i~~a~~I~i~G~G~S~~~A~~~~~~l~--~~g-~~~~~~~~~~-------~~~~~~~D~vI~iS~sG~t~~~i---~~ 94 (179)
T cd05005 28 SAILNAKRIFVYGAGRSGLVAKAFAMRLM--HLG-LNVYVVGETT-------TPAIGPGDLLIAISGSGETSSVV---NA 94 (179)
T ss_pred HHHHhCCeEEEEecChhHHHHHHHHHHHH--hCC-CeEEEeCCCC-------CCCCCCCCEEEEEcCCCCcHHHH---HH
Confidence 34445678888887778889999888872 221 1222233321 124556899999887654 3444 45
Q ss_pred HHhccccCCceE
Q 023987 88 IYALPRLFVASF 99 (274)
Q Consensus 88 ~~a~r~~~a~~i 99 (274)
++.+++.|++-|
T Consensus 95 ~~~ak~~g~~iI 106 (179)
T cd05005 95 AEKAKKAGAKVV 106 (179)
T ss_pred HHHHHHCCCeEE
Confidence 566777787543
No 189
>TIGR01698 PUNP purine nucleotide phosphorylase. methylthioadenosine.
Probab=32.23 E-value=1.4e+02 Score=26.42 Aligned_cols=99 Identities=9% Similarity=-0.068 Sum_probs=59.0
Q ss_pred EEEEecCCcHHHHHHHHHHcCCcceeeeeEeeeC-------CCcceEEEeecCCCCCCeEEEEEec---CCchhHHHHHH
Q 023987 17 VHLFYCVECEELARKVAAQSDLITLQSINWRNFA-------DGWPNLYINSAHDIRGQHVAFLASF---SSPGVIFEQIS 86 (274)
Q Consensus 17 ~~i~~~~~~~~la~~ia~~lg~~~~~~~~~~~F~-------dGE~~~~v~~~~~v~g~~V~iiqs~---~~~~~l~elll 86 (274)
+.|+.|+.=..+++.+.+.. .+++.+ +-.|| .|+ +.+ ..+.|+.|+++|-- ++|..+-+.-.
T Consensus 2 i~iI~GSGl~~~~~~~~~~~-~ipY~~--ip~fp~~tv~gH~g~--l~~---G~l~g~~V~~l~Gr~H~yeg~~~~~v~~ 73 (237)
T TIGR01698 2 MAIVLGSGWGGAVEALGEPV-ELPYAE--IPGFPAPTVSGHAGE--LIR---VRIGDGPVLVLGGRTHAYEGGDARAVVH 73 (237)
T ss_pred EEEEEeCCHHHHHHhhcCce-Eeeccc--CCCCCCCcccCccce--EEE---EEECCEEEEEEcCCCcccCCCcHHHhHH
Confidence 45677887667777775554 255444 34566 352 333 35668999999832 23445556678
Q ss_pred HHHhccccCCceEEEEeecCCCCCccccccCCCcccHHHH
Q 023987 87 VIYALPRLFVASFTLVLPFFPTGSFERMEEEGDVATAFTM 126 (274)
Q Consensus 87 ~~~a~r~~~a~~i~~viPY~~ysRqdr~~~~g~~~~a~~~ 126 (274)
.+.+++..|++++.+.-.==+ .+ ..+.+|+.+..+..
T Consensus 74 ~i~al~~lGv~~ii~tna~Gs-l~--~~~~pGdlv~~~D~ 110 (237)
T TIGR01698 74 PVRTARATGAETLILTNAAGG-LR--QDWGPGTPVLISDH 110 (237)
T ss_pred HHHHHHHcCCCEEEEEccccc-CC--CCCCCCCEEeechh
Confidence 899999999998766432211 12 22346665544433
No 190
>PRK13810 orotate phosphoribosyltransferase; Provisional
Probab=32.23 E-value=3.1e+02 Score=23.24 Aligned_cols=68 Identities=13% Similarity=0.077 Sum_probs=40.5
Q ss_pred CCcHHHHHHHHHHcCCcceeeeeEeeeCCCcceEEEeecCCCCCCeEEEEEecCCc-hhHHHHHHHHHhccccCC
Q 023987 23 VECEELARKVAAQSDLITLQSINWRNFADGWPNLYINSAHDIRGQHVAFLASFSSP-GVIFEQISVIYALPRLFV 96 (274)
Q Consensus 23 ~~~~~la~~ia~~lg~~~~~~~~~~~F~dGE~~~~v~~~~~v~g~~V~iiqs~~~~-~~l~elll~~~a~r~~~a 96 (274)
..--.||..+|..+| +++.-+.-..=.-|+... +. ..-.+|++|+||...-.. ..+.+. ++.+++.|+
T Consensus 82 ~~GiplA~~vA~~l~-~p~v~vRK~~k~~g~~~~-~~-g~~~~g~rVlIVDDVitTGgS~~~~---i~~l~~~Ga 150 (187)
T PRK13810 82 LGGVPLATAVSLETG-LPLLIVRKSVKDYGTGSR-FV-GDLKPEDRIVMLEDVTTSGGSVREA---IEVVREAGA 150 (187)
T ss_pred cchHHHHHHHHHHhC-CCEEEEecCCCccCCCce-EE-ccCCCcCEEEEEEeccCCChHHHHH---HHHHHHCCC
Confidence 334589999999996 887544332222243222 21 122478999999876443 455554 455566676
No 191
>cd01534 4RHOD_Repeat_3 Member of the Rhodanese Homology Domain superfamily, repeat 3. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 3rd repeat which does not contain the putative catalytic Cys residue.
Probab=32.16 E-value=89 Score=22.65 Aligned_cols=31 Identities=13% Similarity=0.082 Sum_probs=24.4
Q ss_pred CCCeEEEEeccccchHHHHHHHHHHHhCCCcEEEE
Q 023987 229 AGCHVVIVDDLVQSGGTLIECQVLSYLLPAVLLKM 263 (274)
Q Consensus 229 ~gk~vlIVDDIi~TG~Tl~~aa~~Lk~~GA~~V~~ 263 (274)
++++++++. .+|.....++..|+..|-. |+.
T Consensus 55 ~~~~iv~~c---~~G~rs~~aa~~L~~~G~~-v~~ 85 (95)
T cd01534 55 RGARIVLAD---DDGVRADMTASWLAQMGWE-VYV 85 (95)
T ss_pred CCCeEEEEC---CCCChHHHHHHHHHHcCCE-EEE
Confidence 467788874 5788888899999999987 644
No 192
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=32.16 E-value=48 Score=29.69 Aligned_cols=39 Identities=15% Similarity=0.126 Sum_probs=30.2
Q ss_pred CeEEEEeccccchHH--HHHHHHHHHhC-CCcEEEEEEecee
Q 023987 231 CHVVIVDDLVQSGGT--LIECQVLSYLL-PAVLLKMCVSEFE 269 (274)
Q Consensus 231 k~vlIVDDIi~TG~T--l~~aa~~Lk~~-GA~~V~~~~tH~~ 269 (274)
-+++|+|-+++-|.. ..+|.+.+.+. --....++++|-.
T Consensus 166 pdILllDEvlavGD~~F~~K~~~rl~e~~~~~~tiv~VSHd~ 207 (249)
T COG1134 166 PDILLLDEVLAVGDAAFQEKCLERLNELVEKNKTIVLVSHDL 207 (249)
T ss_pred CCEEEEehhhhcCCHHHHHHHHHHHHHHHHcCCEEEEEECCH
Confidence 379999999999987 45687777666 3347888999954
No 193
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=32.08 E-value=82 Score=26.85 Aligned_cols=80 Identities=18% Similarity=0.132 Sum_probs=49.1
Q ss_pred hCCCCcEEEEecCCcHHHHHHHHHHcCCcceeeeeEeeeCCCcceEEEeecCCCCCCeEEEEEecCC-chhHHHHHHHHH
Q 023987 11 KSQKKQVHLFYCVECEELARKVAAQSDLITLQSINWRNFADGWPNLYINSAHDIRGQHVAFLASFSS-PGVIFEQISVIY 89 (274)
Q Consensus 11 ~~~~~~~~i~~~~~~~~la~~ia~~lg~~~~~~~~~~~F~dGE~~~~v~~~~~v~g~~V~iiqs~~~-~~~l~elll~~~ 89 (274)
.+.+.++.++.-+.+.+.++.+.. +| ..+. ...|.|-| .+.+.++|-|++++..... +..+-...-+++
T Consensus 19 ~~~~~~V~~l~R~~~~~~~~~l~~-~g-~~vv---~~d~~~~~-----~l~~al~g~d~v~~~~~~~~~~~~~~~~~li~ 88 (233)
T PF05368_consen 19 LSAGFSVRALVRDPSSDRAQQLQA-LG-AEVV---EADYDDPE-----SLVAALKGVDAVFSVTPPSHPSELEQQKNLID 88 (233)
T ss_dssp HHTTGCEEEEESSSHHHHHHHHHH-TT-TEEE---ES-TT-HH-----HHHHHHTTCSEEEEESSCSCCCHHHHHHHHHH
T ss_pred HhCCCCcEEEEeccchhhhhhhhc-cc-ceEe---ecccCCHH-----HHHHHHcCCceEEeecCcchhhhhhhhhhHHH
Confidence 335567777766666666666554 45 5432 22344433 2345688988887665544 455666667999
Q ss_pred hccccCCceEE
Q 023987 90 ALPRLFVASFT 100 (274)
Q Consensus 90 a~r~~~a~~i~ 100 (274)
|++++|.+++.
T Consensus 89 Aa~~agVk~~v 99 (233)
T PF05368_consen 89 AAKAAGVKHFV 99 (233)
T ss_dssp HHHHHT-SEEE
T ss_pred hhhccccceEE
Confidence 99999988864
No 194
>cd01449 TST_Repeat_2 Thiosulfate sulfurtransferase (TST), C-terminal, catalytic domain. TST contains 2 copies of the Rhodanese Homology Domain; this is the second repeat. Only the second repeat contains the catalytically active Cys residue.
Probab=31.79 E-value=86 Score=23.57 Aligned_cols=34 Identities=18% Similarity=0.039 Sum_probs=27.3
Q ss_pred CCCCeEEEEeccccchHHHHHHHHHHHhCCCcEEEEE
Q 023987 228 PAGCHVVIVDDLVQSGGTLIECQVLSYLLPAVLLKMC 264 (274)
Q Consensus 228 v~gk~vlIVDDIi~TG~Tl~~aa~~Lk~~GA~~V~~~ 264 (274)
-++++|++++ .+|.....++..|+..|-+.|+.+
T Consensus 76 ~~~~~iv~yc---~~g~~s~~~~~~l~~~G~~~v~~l 109 (118)
T cd01449 76 TPDKPVIVYC---GSGVTACVLLLALELLGYKNVRLY 109 (118)
T ss_pred CCCCCEEEEC---CcHHHHHHHHHHHHHcCCCCeeee
Confidence 3678899985 568888889999999998877654
No 195
>PRK10287 thiosulfate:cyanide sulfurtransferase; Provisional
Probab=31.08 E-value=1.1e+02 Score=23.29 Aligned_cols=31 Identities=6% Similarity=-0.064 Sum_probs=25.7
Q ss_pred CCeEEEEeccccchHHHHHHHHHHHhCCCcEEEE
Q 023987 230 GCHVVIVDDLVQSGGTLIECQVLSYLLPAVLLKM 263 (274)
Q Consensus 230 gk~vlIVDDIi~TG~Tl~~aa~~Lk~~GA~~V~~ 263 (274)
++.++++ |++|.....+++.|++.|-..|..
T Consensus 60 ~~~IVly---C~~G~rS~~aa~~L~~~G~~~v~~ 90 (104)
T PRK10287 60 NDTVKLY---CNAGRQSGQAKEILSEMGYTHAEN 90 (104)
T ss_pred CCeEEEE---eCCChHHHHHHHHHHHcCCCeEEe
Confidence 4567777 568999999999999999988854
No 196
>PRK09219 xanthine phosphoribosyltransferase; Validated
Probab=30.55 E-value=3.1e+02 Score=23.27 Aligned_cols=72 Identities=8% Similarity=0.026 Sum_probs=41.1
Q ss_pred CCcHHHHHHHHHHcCCcceeeeeEe-eeC---------------CCcceEEEeecCCCCCCeEEEEEecCCc-hhHHHHH
Q 023987 23 VECEELARKVAAQSDLITLQSINWR-NFA---------------DGWPNLYINSAHDIRGQHVAFLASFSSP-GVIFEQI 85 (274)
Q Consensus 23 ~~~~~la~~ia~~lg~~~~~~~~~~-~F~---------------dGE~~~~v~~~~~v~g~~V~iiqs~~~~-~~l~ell 85 (274)
...-.+|..+|..|| .++.-+.-. +.+ .+|..++++-..--+|++|+||...-.. ..+.+
T Consensus 59 ~~GiplA~~lA~~Lg-~p~v~vRK~~k~~~~~~~~~~~~~~~~~~~~~~l~i~~~~i~~G~rVlIVDDviaTGgT~~a-- 135 (189)
T PRK09219 59 ASGIAPAVMAALALG-VPVVFAKKKKSLTLTDDVYTATVYSFTKQVTSTVSVSKKFLSEGDRVLIIDDFLANGQAALG-- 135 (189)
T ss_pred cccHHHHHHHHHHHC-CCEEEEEECCCCCCCCceEEEEEeeeccCceEEEEEEhhhCCCCCEEEEEeehhhcChHHHH--
Confidence 456699999999996 887444332 122 1221222221112368999999865433 34433
Q ss_pred HHHHhccccCCce
Q 023987 86 SVIYALPRLFVAS 98 (274)
Q Consensus 86 l~~~a~r~~~a~~ 98 (274)
+++.++++|++=
T Consensus 136 -~~~lv~~aGa~v 147 (189)
T PRK09219 136 -LIDIIEQAGAKV 147 (189)
T ss_pred -HHHHHHHCCCEE
Confidence 556677778743
No 197
>TIGR03127 RuMP_HxlB 6-phospho 3-hexuloisomerase. Members of this protein family are 6-phospho 3-hexuloisomerase (PHI), or the PHI domain of a fusion protein. This enzyme is part of the ribulose monophosphate (RuMP) pathway, which in one direction removes the toxic metabolite formaldehyde by assimilation into fructose-6-phosphate. In the other direction, in species lacking a complete pentose phosphate pathway, the RuMP pathway yields ribulose-5-phosphate, necessary for nucleotide biosynthesis, at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin.
Probab=30.09 E-value=3.1e+02 Score=22.42 Aligned_cols=77 Identities=12% Similarity=-0.020 Sum_probs=47.2
Q ss_pred hhCCCCcEEEEecCCcHHHHHHHHHHcCCcceeeeeEeeeCCCcceEEEeecCCCCCCeEEEEEecCCc-hhHHHHHHHH
Q 023987 10 KKSQKKQVHLFYCVECEELARKVAAQSDLITLQSINWRNFADGWPNLYINSAHDIRGQHVAFLASFSSP-GVIFEQISVI 88 (274)
Q Consensus 10 ~~~~~~~~~i~~~~~~~~la~~ia~~lg~~~~~~~~~~~F~dGE~~~~v~~~~~v~g~~V~iiqs~~~~-~~l~elll~~ 88 (274)
...+.+.+.+++...+..+|+.++.+|. .++. ...-.+|.. ...+..+|++|+-|.+.. .++++ ++
T Consensus 26 ~l~~a~~I~i~G~G~S~~~A~~~~~~l~--~~g~-~~~~~~~~~-------~~~~~~~Dv~I~iS~sG~t~~~i~---~~ 92 (179)
T TIGR03127 26 KIIKAKRIFVAGAGRSGLVGKAFAMRLM--HLGF-NVYVVGETT-------TPSIKKGDLLIAISGSGETESLVT---VA 92 (179)
T ss_pred HHHhCCEEEEEecCHHHHHHHHHHHHHH--hCCC-eEEEeCCcc-------cCCCCCCCEEEEEeCCCCcHHHHH---HH
Confidence 3445678888886777888888888873 3322 222233321 134556899999887653 34444 45
Q ss_pred HhccccCCceE
Q 023987 89 YALPRLFVASF 99 (274)
Q Consensus 89 ~a~r~~~a~~i 99 (274)
..+++.|++-|
T Consensus 93 ~~ak~~g~~ii 103 (179)
T TIGR03127 93 KKAKEIGATVA 103 (179)
T ss_pred HHHHHCCCeEE
Confidence 56777886543
No 198
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=29.62 E-value=1.1e+02 Score=27.34 Aligned_cols=36 Identities=14% Similarity=0.180 Sum_probs=30.2
Q ss_pred CCCCCeEEEEeccccchHHHHHHHHHHHhCCCcEEEEEEe
Q 023987 227 NPAGCHVVIVDDLVQSGGTLIECQVLSYLLPAVLLKMCVS 266 (274)
Q Consensus 227 ~v~gk~vlIVDDIi~TG~Tl~~aa~~Lk~~GA~~V~~~~t 266 (274)
+++||+|+|+ -+|++-..++..|.+.|+.+|.++.-
T Consensus 120 ~~~~k~vlVl----GaGg~a~ai~~aL~~~g~~~V~v~~R 155 (278)
T PRK00258 120 DLKGKRILIL----GAGGAARAVILPLLDLGVAEITIVNR 155 (278)
T ss_pred CCCCCEEEEE----cCcHHHHHHHHHHHHcCCCEEEEEeC
Confidence 6788998876 47999999999999999888887753
No 199
>PF05124 S_layer_C: S-layer like family, C-terminal region ; InterPro: IPR022651 This entry represents the C-terminal domain of S-layer proteins. Some local similarity can be found to other S-layer protein families.
Probab=29.44 E-value=1.9e+02 Score=25.45 Aligned_cols=54 Identities=15% Similarity=0.119 Sum_probs=36.5
Q ss_pred CCCcEEEEecCCcHHHHHHHHHHcCCcceeeeeEeeeCCCcceEEEee-cCCCCCCeEEEEEecC
Q 023987 13 QKKQVHLFYCVECEELARKVAAQSDLITLQSINWRNFADGWPNLYINS-AHDIRGQHVAFLASFS 76 (274)
Q Consensus 13 ~~~~~~i~~~~~~~~la~~ia~~lg~~~~~~~~~~~F~dGE~~~~v~~-~~~v~g~~V~iiqs~~ 76 (274)
..+++.|+.|+-+..+++++...+. ++. |+.. .-.++. .....|.+|+++.-..
T Consensus 153 ~~~nlILVGGPvaN~~t~~l~~~~~-i~i--------~~~~-~gvi~~~~~~~n~~~VivvAG~D 207 (222)
T PF05124_consen 153 IDKNLILVGGPVANKLTKELNDEFP-IKI--------PGEN-PGVIQVIKNPFNGYDVIVVAGSD 207 (222)
T ss_pred CCCCEEEECCchHHHHHHHHHhcCc-ccc--------cCCC-ceEEEEEecCCCCCEEEEEeCCC
Confidence 3688999999999999999999885 664 3221 112332 2223388999998653
No 200
>PF07788 DUF1626: Protein of unknown function (DUF1626); InterPro: IPR012431 This is a family consisting of sequences from hypothetical proteins of unknown function expressed by certain species of archaea. One member (Q9YCN7 from SWISSPROT) is thought to be similar to tropomyosin [].
Probab=29.21 E-value=1.1e+02 Score=21.94 Aligned_cols=35 Identities=17% Similarity=0.177 Sum_probs=25.0
Q ss_pred hhhHHHhhCCC--CcEEEEecCCcHHHHHHHHHHcCCcc
Q 023987 4 KREIKAKKSQK--KQVHLFYCVECEELARKVAAQSDLIT 40 (274)
Q Consensus 4 ~~~~~~~~~~~--~~~~i~~~~~~~~la~~ia~~lg~~~ 40 (274)
|-+++++..+. ..+.+++..-+.. |.+.|+.|| ++
T Consensus 34 k~~lYek~~grk~~r~ivVtp~id~~-a~~~A~~LG-Ie 70 (70)
T PF07788_consen 34 KAELYEKVHGRKVDRLIVVTPYIDDR-AKEMAEELG-IE 70 (70)
T ss_pred HHHHHHHHHCCCcceEEEEEeecCHH-HHHHHHHhC-CC
Confidence 56778887764 4666676655555 999999997 63
No 201
>PRK00162 glpE thiosulfate sulfurtransferase; Validated
Probab=28.19 E-value=75 Score=23.70 Aligned_cols=31 Identities=6% Similarity=-0.032 Sum_probs=23.1
Q ss_pred CCeEEEEeccccchHHHHHHHHHHHhCCCcEEEE
Q 023987 230 GCHVVIVDDLVQSGGTLIECQVLSYLLPAVLLKM 263 (274)
Q Consensus 230 gk~vlIVDDIi~TG~Tl~~aa~~Lk~~GA~~V~~ 263 (274)
++.++++ |.+|.+...++..|+..|...|+.
T Consensus 58 ~~~ivv~---c~~g~~s~~a~~~L~~~G~~~v~~ 88 (108)
T PRK00162 58 DTPVMVM---CYHGNSSQGAAQYLLQQGFDVVYS 88 (108)
T ss_pred CCCEEEE---eCCCCCHHHHHHHHHHCCchheEE
Confidence 4556665 457777788888999999987763
No 202
>PF03859 CG-1: CG-1 domain; InterPro: IPR005559 CG-1 domains are highly conserved domains of about 130 amino-acid residues containing a predicted bipartite NLS and named after a partial cDNA clone isolated from parsley encoding a sequence-specific DNA-binding protein []. CG-1 domains are associated with CAMTA proteins (for CAlModulin -binding Transcription Activator) that are transcription factors containing a calmodulin-binding domain and ankyrins [].; GO: 0005516 calmodulin binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=27.91 E-value=47 Score=26.30 Aligned_cols=33 Identities=21% Similarity=0.018 Sum_probs=29.2
Q ss_pred chHHHHHHHHHHHhCCCcEEEEEEeceeceecC
Q 023987 242 SGGTLIECQVLSYLLPAVLLKMCVSEFEWVLTF 274 (274)
Q Consensus 242 TG~Tl~~aa~~Lk~~GA~~V~~~~tH~~~~~~~ 274 (274)
-|.|+.++-+.||-.|...+.++-+|++..-||
T Consensus 62 dgktvRE~HekLKv~~~e~l~~~Yah~~~~~~F 94 (118)
T PF03859_consen 62 DGKTVREDHEKLKVGGVEVLNCYYAHSEDNPTF 94 (118)
T ss_pred CCCchhhhhhhhccCceeeeEEEEEeeccCCCe
Confidence 477889999999999999999999999987665
No 203
>PF02875 Mur_ligase_C: Mur ligase family, glutamate ligase domain This Prosite entry is a subset of the Pfam family.; InterPro: IPR004101 The bacterial cell wall provides strength and rigidity to counteract internal osmotic pressure, and protection against the environment. The peptidoglycan layer gives the cell wall its strength, and helps maintain the overall shape of the cell. The basic peptidoglycan structure of both Gram-positive and Gram-negative bacteria is comprised of a sheet of glycan chains connected by short cross-linking polypeptides. Biosynthesis of peptidoglycan is a multi-step (11-12 steps) process comprising three main stages: (1) formation of UDP-N-acetylmuramic acid (UDPMurNAc) from N-acetylglucosamine (GlcNAc). (2) addition of a short polypeptide chain to the UDPMurNAc. (3) addition of a second GlcNAc to the disaccharide-pentapeptide building block and transport of this unit through the cytoplasmic membrane and incorporation into the growing peptidoglycan layer. Stage two involves four key Mur ligase enzymes: MurC (6.3.2.8 from EC) [], MurD (6.3.2.9 from EC) [], MurE (6.3.2.13 from EC) [] and MurF (6.3.2.10 from EC) []. These four Mur ligases are responsible for the successive additions of L-alanine, D-glutamate, meso-diaminopimelate or L-lysine, and D-alanyl-D-alanine to UDP-N-acetylmuramic acid. All four Mur ligases are topologically similar to one another, even though they display low sequence identity. They are each composed of three domains: an N-terminal Rossmann-fold domain responsible for binding the UDPMurNAc substrate; a central domain (similar to ATP-binding domains of several ATPases and GTPases); and a C-terminal domain (similar to dihydrofolate reductase fold) that appears to be associated with binding the incoming amino acid. The conserved sequence motifs found in the four Mur enzymes also map to other members of the Mur ligase family, including folylpolyglutamate synthetase, cyanophycin synthetase and the capB enzyme from Bacillales []. This entry represents the C-terminal domain from all four stage 2 Mur enzymes: UDP-N-acetylmuramate-L-alanine ligase (MurC), UDP-N-acetylmuramoylalanine-D-glutamate ligase (MurD), UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase (MurE), and UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase (MurF). This entry also includes the C-terminal domain of folylpolyglutamate synthase that transfers glutamate to folylpolyglutamate and cyanophycin synthetase that catalyses the biosynthesis of the cyanobacterial reserve material multi-L-arginyl-poly-L-aspartate (cyanophycin) []. The C-terminal domain is almost always associated with the cytoplasmic peptidoglycan synthetases, N-terminal domain (see IPR000713 from INTERPRO).; GO: 0005524 ATP binding, 0016874 ligase activity, 0009058 biosynthetic process; PDB: 2Y68_A 3UAG_A 4UAG_A 2UAG_A 1E0D_A 2XPC_A 2WJP_A 2VTE_A 2Y67_A 1EEH_A ....
Probab=27.76 E-value=99 Score=22.36 Aligned_cols=35 Identities=11% Similarity=0.078 Sum_probs=24.4
Q ss_pred eEEEEeccccchHHHHHHHHHHHhC-CCcEEEEEEe
Q 023987 232 HVVIVDDLVQSGGTLIECQVLSYLL-PAVLLKMCVS 266 (274)
Q Consensus 232 ~vlIVDDIi~TG~Tl~~aa~~Lk~~-GA~~V~~~~t 266 (274)
.+.++||-..+-..+.++.+.|++. +.+++.++..
T Consensus 13 ~~~vi~D~ahNp~s~~a~l~~l~~~~~~~~~i~V~G 48 (91)
T PF02875_consen 13 GPTVIDDYAHNPDSIRALLEALKELYPKGRIIAVFG 48 (91)
T ss_dssp TEEEEEET--SHHHHHHHHHHHHHHCTTSEEEEEEE
T ss_pred CcEEEEECCCCHHHHHHHHHHHHHhccCCcEEEEEc
Confidence 4667777888899999999999887 5566555443
No 204
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=27.66 E-value=89 Score=30.22 Aligned_cols=43 Identities=9% Similarity=0.139 Sum_probs=36.6
Q ss_pred eCCCCCCeEEEEeccccchHHHHHHHHHHHhCCCcEEEEEEeceecee
Q 023987 225 EGNPAGCHVVIVDDLVQSGGTLIECQVLSYLLPAVLLKMCVSEFEWVL 272 (274)
Q Consensus 225 ~~~v~gk~vlIVDDIi~TG~Tl~~aa~~Lk~~GA~~V~~~~tH~~~~~ 272 (274)
..+++||+|++| =+|.|-..++..|.+.| ++|..++-+..+.+
T Consensus 170 ~~~~~GKrV~VI----G~GaSA~di~~~l~~~g-a~vt~~qRs~~~~~ 212 (443)
T COG2072 170 PEDLRGKRVLVI----GAGASAVDIAPELAEVG-ASVTLSQRSPPHIL 212 (443)
T ss_pred ccccCCCeEEEE----CCCccHHHHHHHHHhcC-CeeEEEecCCCcee
Confidence 358899999975 69999999999999999 88999887776654
No 205
>cd01522 RHOD_1 Member of the Rhodanese Homology Domain superfamily, subgroup 1. This CD includes the putative rhodanese-related sulfurtransferases of several uncharacterized proteins.
Probab=27.35 E-value=1e+02 Score=23.59 Aligned_cols=33 Identities=12% Similarity=0.028 Sum_probs=26.1
Q ss_pred CCCeEEEEeccccchHHHHHHHHHHHhCCCcEEEEE
Q 023987 229 AGCHVVIVDDLVQSGGTLIECQVLSYLLPAVLLKMC 264 (274)
Q Consensus 229 ~gk~vlIVDDIi~TG~Tl~~aa~~Lk~~GA~~V~~~ 264 (274)
+++.++++ |.+|.+...++..|++.|-.+|+.+
T Consensus 63 ~~~~ivv~---C~~G~rs~~aa~~L~~~G~~~v~~l 95 (117)
T cd01522 63 KDRPVLLL---CRSGNRSIAAAEAAAQAGFTNVYNV 95 (117)
T ss_pred CCCeEEEE---cCCCccHHHHHHHHHHCCCCeEEEC
Confidence 45677775 5688888899999999999888643
No 206
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=27.10 E-value=1.4e+02 Score=24.90 Aligned_cols=34 Identities=24% Similarity=0.230 Sum_probs=25.7
Q ss_pred CCCCCCeEEEEeccccchHHHHH-HHHHHHhCCCcEEEEE
Q 023987 226 GNPAGCHVVIVDDLVQSGGTLIE-CQVLSYLLPAVLLKMC 264 (274)
Q Consensus 226 ~~v~gk~vlIVDDIi~TG~Tl~~-aa~~Lk~~GA~~V~~~ 264 (274)
++++||+|+|| =.|.+... +++.|++.|+ +|.++
T Consensus 40 ~~l~gk~vlVi----G~G~~~G~~~a~~L~~~g~-~V~v~ 74 (168)
T cd01080 40 IDLAGKKVVVV----GRSNIVGKPLAALLLNRNA-TVTVC 74 (168)
T ss_pred CCCCCCEEEEE----CCcHHHHHHHHHHHhhCCC-EEEEE
Confidence 57899999986 35666566 8999999998 45544
No 207
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=27.05 E-value=3.7e+02 Score=23.26 Aligned_cols=67 Identities=15% Similarity=0.092 Sum_probs=39.7
Q ss_pred cHHHHHHHHhcCCCCCCCCCEEEEEeCCchhhhcccCCCCcccccchHHHHHHHHhcCCCCCCeEEEecCCChHHHHHHh
Q 023987 122 TAFTMARILSNIPTSRGGPTSLVIYDIHALQERFYFSDHVLPLFETGIPLLKQRLHQLPDANNIVIAFPDDGAWKRFHKM 201 (274)
Q Consensus 122 ~a~~~a~ll~~~~~~~~g~d~ii~vdlH~~~~~~ff~~~~~~l~~~~~~~la~~l~~~~~~~~~viV~pd~G~~~ra~~~ 201 (274)
....+|+.++. .|++.++.+|+....... + ....+.+.+.+. .+.|++++-.......+..+
T Consensus 28 d~~~~a~~~~~-----~G~~~i~i~d~~~~~~~~----~-------~~~~~i~~i~~~--~~~pv~~~GGI~s~~d~~~~ 89 (243)
T cd04731 28 DPVELAKRYNE-----QGADELVFLDITASSEGR----E-------TMLDVVERVAEE--VFIPLTVGGGIRSLEDARRL 89 (243)
T ss_pred CHHHHHHHHHH-----CCCCEEEEEcCCcccccC----c-------ccHHHHHHHHHh--CCCCEEEeCCCCCHHHHHHH
Confidence 45578888875 599999999998632211 1 112344555553 34567766665666666555
Q ss_pred hc-CCC
Q 023987 202 LD-HFP 206 (274)
Q Consensus 202 a~-~~~ 206 (274)
.. +++
T Consensus 90 l~~G~~ 95 (243)
T cd04731 90 LRAGAD 95 (243)
T ss_pred HHcCCc
Confidence 43 444
No 208
>PRK08105 flavodoxin; Provisional
Probab=27.01 E-value=2.2e+02 Score=22.94 Aligned_cols=64 Identities=13% Similarity=0.050 Sum_probs=34.7
Q ss_pred cEEEEecCC---cHHHHHHHHHHcCCcceeeeeEeeeCCCcceEEEeecCCCCCCeEEEEEecC----CchhHHHHHH
Q 023987 16 QVHLFYCVE---CEELARKVAAQSDLITLQSINWRNFADGWPNLYINSAHDIRGQHVAFLASFS----SPGVIFEQIS 86 (274)
Q Consensus 16 ~~~i~~~~~---~~~la~~ia~~lg~~~~~~~~~~~F~dGE~~~~v~~~~~v~g~~V~iiqs~~----~~~~l~elll 86 (274)
.+.||.|+. +..+|++|++.|. -.=.++.+..-+|-+ .+ +......|+++.|++ +|++..+++.
T Consensus 3 ~i~I~YgS~tGnte~~A~~l~~~l~-~~g~~~~~~~~~~~~-----~~-~~~~~~~vi~~~sT~G~Ge~p~~~~~f~~ 73 (149)
T PRK08105 3 KVGIFVGTVYGNALLVAEEAEAILT-AQGHEVTLFEDPELS-----DW-QPYQDELVLVVTSTTGQGDLPDSIVPLFQ 73 (149)
T ss_pred eEEEEEEcCchHHHHHHHHHHHHHH-hCCCceEEechhhCC-----ch-hcccCCeEEEEECCCCCCCCChhHHHHHH
Confidence 577777655 5699999998884 221223332222211 10 111135678888876 3566665543
No 209
>PLN02469 hydroxyacylglutathione hydrolase
Probab=26.91 E-value=88 Score=27.91 Aligned_cols=40 Identities=10% Similarity=0.032 Sum_probs=29.0
Q ss_pred CCCCCCeEEEEeccccchHHHHHHHHHHHhCCCcEEEEEEeceec
Q 023987 226 GNPAGCHVVIVDDLVQSGGTLIECQVLSYLLPAVLLKMCVSEFEW 270 (274)
Q Consensus 226 ~~v~gk~vlIVDDIi~TG~Tl~~aa~~Lk~~GA~~V~~~~tH~~~ 270 (274)
.+-.++.++||| .| ....+.+.+++.|..--.++.||+-+
T Consensus 18 ~d~~~~~~vlID----p~-~~~~il~~l~~~g~~l~~Il~TH~H~ 57 (258)
T PLN02469 18 IDESTKDAAVVD----PV-DPEKVLQAAHEHGAKIKLVLTTHHHW 57 (258)
T ss_pred EeCCCCeEEEEC----CC-ChHHHHHHHHHcCCcccEEEecCCCC
Confidence 333456789998 33 35667778888888777889999753
No 210
>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]
Probab=26.90 E-value=1.2e+02 Score=27.54 Aligned_cols=36 Identities=17% Similarity=0.123 Sum_probs=31.0
Q ss_pred CCCCCCeEEEEeccccchHHHHHHHHHHHhCCCcEEEEEE
Q 023987 226 GNPAGCHVVIVDDLVQSGGTLIECQVLSYLLPAVLLKMCV 265 (274)
Q Consensus 226 ~~v~gk~vlIVDDIi~TG~Tl~~aa~~Lk~~GA~~V~~~~ 265 (274)
.+++|++++|+ =.||+-..++-.|++.|+++|.++-
T Consensus 122 ~~~~~~~vlil----GAGGAarAv~~aL~~~g~~~i~V~N 157 (283)
T COG0169 122 VDVTGKRVLIL----GAGGAARAVAFALAEAGAKRITVVN 157 (283)
T ss_pred cccCCCEEEEE----CCcHHHHHHHHHHHHcCCCEEEEEe
Confidence 35678999975 6999999999999999999998763
No 211
>PF03195 DUF260: Protein of unknown function DUF260; InterPro: IPR004883 The lateral organ boundaries (LOB) gene is expressed at the adaxial base of initiating lateral organs and encodes a plant-specific protein of unknown function. The N-terminal one half of the LOB protein contains a conserved approximately 100-amino acid domain (the LOB domain) that is present in 42 other Arabidopsis thaliana proteins and in proteins from a variety of other plant species. Genes encoding LOB domain (LBD) proteins are expressed in a variety of temporal- and tissue-specific patterns, suggesting that they may function in diverse processes [] The LOB domain contains conserved blocks of amino acids that identify the LBD gene family. In particular, a conserved C-x(2)-C-x(6)-C-x(3)-C motif, which is defining feature of the LOB domain, is present in all LBD proteins. It is possible that this motif forms a new zinc finger [].
Probab=26.36 E-value=19 Score=27.69 Aligned_cols=44 Identities=18% Similarity=0.369 Sum_probs=30.0
Q ss_pred HhccccCCceEEEEeecCCCCCccccccCCCcccHHHHHHHHhcC
Q 023987 89 YALPRLFVASFTLVLPFFPTGSFERMEEEGDVATAFTMARILSNI 133 (274)
Q Consensus 89 ~a~r~~~a~~i~~viPY~~ysRqdr~~~~g~~~~a~~~a~ll~~~ 133 (274)
..+|+..... ....||||..+..+-......+.+.-+.+||+..
T Consensus 6 k~lRr~C~~~-C~laPyFP~~~~~~F~~vhkvFG~sni~k~L~~~ 49 (101)
T PF03195_consen 6 KHLRRRCSPD-CVLAPYFPADQPQRFANVHKVFGVSNISKMLQEL 49 (101)
T ss_pred HHHhCCCCCC-CcCCCCCChhHHHHHHHHHHHHchhHHHHHHHhC
Confidence 3445544433 7789999997755543455677788899999863
No 212
>TIGR02990 ectoine_eutA ectoine utilization protein EutA. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti and Silicibacter pomeroyi. It is missing from two other species with the other ectoine transport and utilization genes: Pseudomonas putida and Agrobacterium tumefaciens.
Probab=26.20 E-value=40 Score=29.90 Aligned_cols=89 Identities=15% Similarity=0.099 Sum_probs=51.1
Q ss_pred EEEEecCCcHHHHHHHHHHcCCcceeeeeEeeeCCCcceEE----------E-----eecCCCCCCeEEEEEecCC----
Q 023987 17 VHLFYCVECEELARKVAAQSDLITLQSINWRNFADGWPNLY----------I-----NSAHDIRGQHVAFLASFSS---- 77 (274)
Q Consensus 17 ~~i~~~~~~~~la~~ia~~lg~~~~~~~~~~~F~dGE~~~~----------v-----~~~~~v~g~~V~iiqs~~~---- 77 (274)
+=++.-++|.-+-.+..+.+. -.=..+...++|-+. .+. + .+..+ .+-|+++...++.
T Consensus 10 iGlIvpssn~t~E~e~~~~~~-p~~v~~h~sRi~~~~-~vt~e~L~~m~~~l~~aa~~ll~~-a~~dvi~~~cTsgs~~~ 86 (239)
T TIGR02990 10 IGLVILATDHTSERDFARMVA-SDRIGVYVNRIPYAN-PTTPENLRKMQPRLTEAAALILPD-EELDVVAYSCTSASVVI 86 (239)
T ss_pred EEEEECCCCCchHHHHHHHhC-cCCeEEEEeceeCCC-CCCHHHHHHHhhhHHHHHHHhcCC-CCCCEEEEccchhheec
Confidence 334556777777777777762 222455556665321 010 0 01111 1357777765543
Q ss_pred -chhHHHHH--------------HHHHhccccCCceEEEEeecCCC
Q 023987 78 -PGVIFEQI--------------SVIYALPRLFVASFTLVLPFFPT 108 (274)
Q Consensus 78 -~~~l~ell--------------l~~~a~r~~~a~~i~~viPY~~y 108 (274)
++.+.+.+ -++++|+..|++||.++-||.+.
T Consensus 87 G~~~~~~~i~~~~~g~p~tt~~~A~~~AL~alg~~RIalvTPY~~~ 132 (239)
T TIGR02990 87 GDDEVTRAINAAKPGTPVVTPSSAAVDGLAALGVRRISLLTPYTPE 132 (239)
T ss_pred CHHHHHHHHHhcCCCCCeeCHHHHHHHHHHHcCCCEEEEECCCcHH
Confidence 23333332 36778999999999999999765
No 213
>cd05017 SIS_PGI_PMI_1 The members of this protein family contain the SIS (Sugar ISomerase) domain and have both the phosphoglucose isomerase (PGI) and the phosphomannose isomerase (PMI) functions. These functions catalyze the reversible reactions of glucose 6-phosphate to fructose 6-phosphate, and mannose 6-phosphate to fructose 6-phosphate, respectively at an equal rate. This protein contains two SIS domains. This alignment is based on the first SIS domain.
Probab=25.99 E-value=3e+02 Score=20.92 Aligned_cols=75 Identities=5% Similarity=-0.140 Sum_probs=39.7
Q ss_pred EEEEecCCcHHHHHHHHHHcCCcceeeeeEeeeCCCcceEEEeecCCCCCCeEEEEEecCCc-hhHHHHHHHHHhccccC
Q 023987 17 VHLFYCVECEELARKVAAQSDLITLQSINWRNFADGWPNLYINSAHDIRGQHVAFLASFSSP-GVIFEQISVIYALPRLF 95 (274)
Q Consensus 17 ~~i~~~~~~~~la~~ia~~lg~~~~~~~~~~~F~dGE~~~~v~~~~~v~g~~V~iiqs~~~~-~~l~elll~~~a~r~~~ 95 (274)
+.+++.-+|...|+.....+. . .......-.+|.+. +......|++|+-|.+.. .++++ .++.+|+.|
T Consensus 2 I~i~G~G~S~~~a~~~~~~l~-~-~~~~~~~~~~~~~~------~~~~~~~dl~I~iS~SG~t~e~i~---~~~~a~~~g 70 (119)
T cd05017 2 IVILGMGGSGIGGDLLESLLL-D-EAKIPVYVVKDYTL------PAFVDRKTLVIAVSYSGNTEETLS---AVEQAKERG 70 (119)
T ss_pred EEEEEcCHHHHHHHHHHHHHH-h-ccCCCEEEecCccC------cCCCCCCCEEEEEECCCCCHHHHH---HHHHHHHCC
Confidence 455554455566666666553 2 11233333344321 124556789999887643 34444 555677778
Q ss_pred CceEEEEe
Q 023987 96 VASFTLVL 103 (274)
Q Consensus 96 a~~i~~vi 103 (274)
+ ++.++.
T Consensus 71 ~-~iI~IT 77 (119)
T cd05017 71 A-KIVAIT 77 (119)
T ss_pred C-EEEEEe
Confidence 6 444444
No 214
>PRK08202 purine nucleoside phosphorylase; Provisional
Probab=25.96 E-value=2.5e+02 Score=25.23 Aligned_cols=113 Identities=14% Similarity=0.069 Sum_probs=61.3
Q ss_pred hHHHhhC-CCCcEEEEecCCcHHHHHHHHHHcCCcceeeeeEeeeCC-------CcceEEEeecCCCCCCeEEEEEecCC
Q 023987 6 EIKAKKS-QKKQVHLFYCVECEELARKVAAQSDLITLQSINWRNFAD-------GWPNLYINSAHDIRGQHVAFLASFSS 77 (274)
Q Consensus 6 ~~~~~~~-~~~~~~i~~~~~~~~la~~ia~~lg~~~~~~~~~~~F~d-------GE~~~~v~~~~~v~g~~V~iiqs~~~ 77 (274)
.+..+.. .+..+-|+.|+.=-.+++.+.... .+++.+ +-.||. | .++. ..+.|++|+++++...
T Consensus 12 ~i~~~~~~~~~~i~iI~GsGl~~~~~~~~~~~-~~~y~~--ip~f~~~~v~gh~~--~~~~---G~l~g~~Vv~~~g~~H 83 (272)
T PRK08202 12 FIREKTGAFKPEIGLILGSGLGALADEIENAV-VIPYAD--IPGFPVSTVEGHAG--ELVL---GRLGGKPVLAMQGRFH 83 (272)
T ss_pred HHHHhcCCCCCCEEEEeCCchhHHHHHhcCcE-EEeccc--CCCCCCCCCcCCCc--eEEE---EEECCEEEEEEccCCc
Confidence 3455544 467888999998777776553332 123222 233553 5 2333 2566899999997541
Q ss_pred ---chhHHHHHHHHHhccccCCceEEEEeecCCCCCccccccCCCcccHHHHHHH
Q 023987 78 ---PGVIFEQISVIYALPRLFVASFTLVLPFFPTGSFERMEEEGDVATAFTMARI 129 (274)
Q Consensus 78 ---~~~l~elll~~~a~r~~~a~~i~~viPY~~ysRqdr~~~~g~~~~a~~~a~l 129 (274)
+...-+.-..+.++++.|++.|...--=-+- +. ..++|+.+-...+.++
T Consensus 84 ~yeG~~~~~~~a~i~~l~~lGv~~II~tgaaGsL-~~--~l~~GDiVi~~d~i~~ 135 (272)
T PRK08202 84 YYEGYSMEAVTFPVRVMKALGVETLIVTNAAGGL-NP--DFGPGDLMLISDHINL 135 (272)
T ss_pred ccCCCCHHHHHHHHHHHHHcCCCEEEEecccccC-CC--CCCCCCEEEEchhhhh
Confidence 1111122345677888888887654322221 11 2345666655544443
No 215
>PRK09213 pur operon repressor; Provisional
Probab=25.87 E-value=4.2e+02 Score=23.98 Aligned_cols=71 Identities=20% Similarity=0.248 Sum_probs=40.9
Q ss_pred cCCcHHHHHHHHHHcCCcceeeeeE-eeeCCCcceEEEe-------------ec-CCC-CCCeEEEEEecCCc-hhHHHH
Q 023987 22 CVECEELARKVAAQSDLITLQSINW-RNFADGWPNLYIN-------------SA-HDI-RGQHVAFLASFSSP-GVIFEQ 84 (274)
Q Consensus 22 ~~~~~~la~~ia~~lg~~~~~~~~~-~~F~dGE~~~~v~-------------~~-~~v-~g~~V~iiqs~~~~-~~l~el 84 (274)
...--.||..+|..|| .++.-+.- .+..+|++ +.+. ++ ..+ +|++|+||...-.. ..+.+
T Consensus 138 et~GIplA~~vA~~L~-vp~vivRK~~K~~~G~~-vs~~y~sgs~~~ie~m~L~~~~l~~G~rVLIVDDv~~TGgTi~a- 214 (271)
T PRK09213 138 ETKGIPLAYAVANYLN-VPFVIVRRDSKVTEGST-VSINYVSGSSKRIETMSLSKRSLKEGSRVLIVDDFMKAGGTING- 214 (271)
T ss_pred ccccHHHHHHHHHHHC-CCEEEEEECCCCCCCCc-EEEEEEecccccceEEEEeHhhcCCcCEEEEEeeecccCHhHHH-
Confidence 3556799999999996 88754443 22234431 2111 11 122 68999999875433 34444
Q ss_pred HHHHHhccccCCc
Q 023987 85 ISVIYALPRLFVA 97 (274)
Q Consensus 85 ll~~~a~r~~~a~ 97 (274)
+++.+++.|++
T Consensus 215 --~i~Ll~e~Ga~ 225 (271)
T PRK09213 215 --MISLLKEFDAE 225 (271)
T ss_pred --HHHHHHHCCCE
Confidence 45556666664
No 216
>COG0031 CysK Cysteine synthase [Amino acid transport and metabolism]
Probab=25.35 E-value=79 Score=29.15 Aligned_cols=30 Identities=17% Similarity=0.129 Sum_probs=23.8
Q ss_pred ccchHHHHHHHHHHHhCCCcEEEEEEeceec
Q 023987 240 VQSGGTLIECQVLSYLLPAVLLKMCVSEFEW 270 (274)
Q Consensus 240 i~TG~Tl~~aa~~Lk~~GA~~V~~~~tH~~~ 270 (274)
+-||||+.-+++.||+..+. +.+++.-.+.
T Consensus 177 vGTGGTitGvar~Lk~~~p~-i~iv~vdP~~ 206 (300)
T COG0031 177 VGTGGTITGVARYLKERNPN-VRIVAVDPEG 206 (300)
T ss_pred CCcchhHHHHHHHHHhhCCC-cEEEEECCCC
Confidence 46999999999999999876 6666655443
No 217
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=25.30 E-value=2.9e+02 Score=24.19 Aligned_cols=116 Identities=12% Similarity=0.088 Sum_probs=60.2
Q ss_pred ccccCCceEEEEeecCCCCCccccccCCCcccHHHHHHHHhcCCCCCCCCCEEEEEeCCchhhhcccCCCCcccccchHH
Q 023987 91 LPRLFVASFTLVLPFFPTGSFERMEEEGDVATAFTMARILSNIPTSRGGPTSLVIYDIHALQERFYFSDHVLPLFETGIP 170 (274)
Q Consensus 91 ~r~~~a~~i~~viPY~~ysRqdr~~~~g~~~~a~~~a~ll~~~~~~~~g~d~ii~vdlH~~~~~~ff~~~~~~l~~~~~~ 170 (274)
++..++++|-=+-.+.||| +-+||.-+.. -| +++|+|.-..+ ..
T Consensus 55 ~~~~~~k~iLEiGT~~GyS-------------al~mA~~l~~-----~g--~l~tiE~~~e~----------------~~ 98 (219)
T COG4122 55 ARLSGPKRILEIGTAIGYS-------------ALWMALALPD-----DG--RLTTIERDEER----------------AE 98 (219)
T ss_pred HHhcCCceEEEeecccCHH-------------HHHHHhhCCC-----CC--eEEEEeCCHHH----------------HH
Confidence 3445889999999999994 4467776652 13 89999954422 12
Q ss_pred HHHHHHhcCCCCCCe--EEEecCCChHHHHHHhh-cCCCeEEEEEEEeCCceEEEeeeCCCCCCeEEEEeccccchHH
Q 023987 171 LLKQRLHQLPDANNI--VIAFPDDGAWKRFHKML-DHFPTVVCAKVREGDKRIVRIKEGNPAGCHVVIVDDLVQSGGT 245 (274)
Q Consensus 171 ~la~~l~~~~~~~~~--viV~pd~G~~~ra~~~a-~~~~~~~~~k~R~~~~~i~~~~~~~v~gk~vlIVDDIi~TG~T 245 (274)
...+.+++. +.++- ++++-| ++.-..... ...++++++...............-++---++++|+++-.|..
T Consensus 99 ~A~~n~~~a-g~~~~i~~~~~gd--al~~l~~~~~~~fDliFIDadK~~yp~~le~~~~lLr~GGliv~DNvl~~G~v 173 (219)
T COG4122 99 IARENLAEA-GVDDRIELLLGGD--ALDVLSRLLDGSFDLVFIDADKADYPEYLERALPLLRPGGLIVADNVLFGGRV 173 (219)
T ss_pred HHHHHHHHc-CCcceEEEEecCc--HHHHHHhccCCCccEEEEeCChhhCHHHHHHHHHHhCCCcEEEEeecccCCcc
Confidence 222233332 33332 233311 333333222 2456777643221111110000111444478999999999843
No 218
>PRK13940 glutamyl-tRNA reductase; Provisional
Probab=25.29 E-value=1.2e+02 Score=29.24 Aligned_cols=37 Identities=16% Similarity=0.009 Sum_probs=31.7
Q ss_pred eCCCCCCeEEEEeccccchHHHHHHHHHHHhCCCcEEEEEE
Q 023987 225 EGNPAGCHVVIVDDLVQSGGTLIECQVLSYLLPAVLLKMCV 265 (274)
Q Consensus 225 ~~~v~gk~vlIVDDIi~TG~Tl~~aa~~Lk~~GA~~V~~~~ 265 (274)
.+++.||+++| +-+|+.-..+++.|.+.|+.+|.++-
T Consensus 176 ~~~l~~kkvlv----iGaG~~a~~va~~L~~~g~~~I~V~n 212 (414)
T PRK13940 176 LDNISSKNVLI----IGAGQTGELLFRHVTALAPKQIMLAN 212 (414)
T ss_pred hcCccCCEEEE----EcCcHHHHHHHHHHHHcCCCEEEEEC
Confidence 36788999985 46899999999999999999888764
No 219
>PRK08564 5'-methylthioadenosine phosphorylase II; Reviewed
Probab=25.28 E-value=72 Score=28.81 Aligned_cols=99 Identities=18% Similarity=0.126 Sum_probs=55.5
Q ss_pred CCCCcEEEEecCCc---HHHHHHHHHHcCCcceeeeeEeeeCCCcceEEEeecCCCCCCeEEEE--Ee---cCCchhHHH
Q 023987 12 SQKKQVHLFYCVEC---EELARKVAAQSDLITLQSINWRNFADGWPNLYINSAHDIRGQHVAFL--AS---FSSPGVIFE 83 (274)
Q Consensus 12 ~~~~~~~i~~~~~~---~~la~~ia~~lg~~~~~~~~~~~F~dGE~~~~v~~~~~v~g~~V~ii--qs---~~~~~~l~e 83 (274)
|.+..+-|+.|++- ..|++.+-... .+++++ |-|+ +.+ ..+.|++|+++ |. .++|.++-
T Consensus 5 ~~~~~igiIgGSGl~~~~~l~~~~~~~~-~tpyg~------p~~~--l~~---g~l~g~~v~~l~RhGr~H~y~~~~i~- 71 (267)
T PRK08564 5 NEKASIGIIGGSGLYDPGIFENSKEVKV-YTPYGE------PSDN--III---GEIEGVEVAFLPRHGRGHRIPPHKIN- 71 (267)
T ss_pred CCCceEEEEecCCCCCCcccccceeeeE-EcCCCC------CccC--EEE---EEECCEEEEEEeCCCCCcccCCccCc-
Confidence 44567888888886 44544443333 234332 4563 333 24568999999 43 22343332
Q ss_pred HHHHHHhccccCCceEEEEeecCCCCCccccccCCCcccHHHH
Q 023987 84 QISVIYALPRLFVASFTLVLPFFPTGSFERMEEEGDVATAFTM 126 (274)
Q Consensus 84 lll~~~a~r~~~a~~i~~viPY~~ysRqdr~~~~g~~~~a~~~ 126 (274)
.-..+.+++..|++.+.+.--=-+. +.| +++|+.+.....
T Consensus 72 ~~a~i~aLk~LGvk~iI~tnavGsl-~~~--~~pGDlVv~~D~ 111 (267)
T PRK08564 72 YRANIWALKELGVEWVIAVSAVGSL-RED--YKPGDFVIPDQF 111 (267)
T ss_pred chHHHHHHHHCCCcEEEEecccccc-CCC--CCCCCEEeehhh
Confidence 3467888999999988765332222 222 356665544433
No 220
>TIGR00201 comF comF family protein. This protein is found in species that do (Bacillus subtilis, Haemophilus influenzae) or do not (E. coli, Borrelia burgdorferi) have described systems for natural transformation with exogenous DNA. It is involved in competence for transformation in Bacillus subtilis.
Probab=25.09 E-value=1.4e+02 Score=25.14 Aligned_cols=38 Identities=16% Similarity=0.292 Sum_probs=27.8
Q ss_pred CCCCCeEEEEEecCCchhHHHHHHHHHhccccCCceEEEE
Q 023987 63 DIRGQHVAFLASFSSPGVIFEQISVIYALPRLFVASFTLV 102 (274)
Q Consensus 63 ~v~g~~V~iiqs~~~~~~l~elll~~~a~r~~~a~~i~~v 102 (274)
.+.|++|+||.....-...+. .++++|++.|+++|.++
T Consensus 149 ~~~~~~vllvDDV~TTGaTl~--~~~~~L~~~Ga~~V~~~ 186 (190)
T TIGR00201 149 SFQGRNIVLVDDVVTTGATLH--EIARLLLELGAASVQVW 186 (190)
T ss_pred CCCCCEEEEEeeeeccHHHHH--HHHHHHHHcCCCEEEEE
Confidence 478999999998765544333 45677888999988765
No 221
>TIGR03581 EF_0839 conserved hypothetical protein EF_0839/AHA_3917. Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.
Probab=24.97 E-value=63 Score=28.48 Aligned_cols=29 Identities=7% Similarity=-0.215 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHhCCCcEEEEEEeceecee
Q 023987 244 GTLIECQVLSYLLPAVLLKMCVSEFEWVL 272 (274)
Q Consensus 244 ~Tl~~aa~~Lk~~GA~~V~~~~tH~~~~~ 272 (274)
-+...|+..|++.|+.+|..+=.+|...+
T Consensus 135 V~vetAiaml~dmG~~SiKffPM~Gl~~l 163 (236)
T TIGR03581 135 VPIETAIAMLKDMGGSSVKFFPMGGLKHL 163 (236)
T ss_pred eeHHHHHHHHHHcCCCeeeEeecCCcccH
Confidence 67889999999999999999988887653
No 222
>PRK02122 glucosamine-6-phosphate deaminase-like protein; Validated
Probab=24.96 E-value=98 Score=31.70 Aligned_cols=40 Identities=20% Similarity=0.115 Sum_probs=31.4
Q ss_pred CCCCCeEEEE-----eccccchHHHHHHHHHHHhCCCcEEEEEEeceec
Q 023987 227 NPAGCHVVIV-----DDLVQSGGTLIECQVLSYLLPAVLLKMCVSEFEW 270 (274)
Q Consensus 227 ~v~gk~vlIV-----DDIi~TG~Tl~~aa~~Lk~~GA~~V~~~~tH~~~ 270 (274)
....++||+| ||+++-|||+. .|.++|.....++.|-|..
T Consensus 366 ~~~~~rvLv~spHPDDevi~~GGTla----rl~~~G~~V~vv~~TsG~~ 410 (652)
T PRK02122 366 LPYPKRVIIFSPHPDDDVISMGGTFR----RLVEQGHDVHVAYQTSGNI 410 (652)
T ss_pred ccCCceEEEEEeCCCchHhhhHHHHH----HHHHCCCcEEEEEecCCcc
Confidence 4456788888 88999999995 4567898887788887764
No 223
>PRK08558 adenine phosphoribosyltransferase; Provisional
Probab=24.77 E-value=4.8e+02 Score=22.94 Aligned_cols=79 Identities=13% Similarity=0.011 Sum_probs=46.0
Q ss_pred cEEEEecCCcHHHHHHHHHHcCCcceeeeeEeee-------------CCCcceEEEeec--CCCCCCeEEEEEecCCc-h
Q 023987 16 QVHLFYCVECEELARKVAAQSDLITLQSINWRNF-------------ADGWPNLYINSA--HDIRGQHVAFLASFSSP-G 79 (274)
Q Consensus 16 ~~~i~~~~~~~~la~~ia~~lg~~~~~~~~~~~F-------------~dGE~~~~v~~~--~~v~g~~V~iiqs~~~~-~ 79 (274)
...+-.....-.+|..+|..|| .++.-+.-.+. ..|.. ....++ .-.+|++|+||..+-.. .
T Consensus 113 D~Vvtv~~~GI~lA~~lA~~L~-~p~vi~Rk~~~~~~~~~v~~y~s~s~~~~-~~~~l~~~~l~~G~rVLIVDDvi~TG~ 190 (238)
T PRK08558 113 DVVLTAATDGIPLAVAIASYFG-ADLVYAKKSKETGVEKFYEEYQRLASGIE-VTLYLPASALKKGDRVLIVDDIIRSGE 190 (238)
T ss_pred CEEEEECcccHHHHHHHHHHHC-cCEEEEEecCCCCCcceEEEeeccCCCce-eEEEecHHHcCCcCEEEEEecccccCH
Confidence 3444445677899999999996 98765432211 11210 112222 22578999999876544 3
Q ss_pred hHHHHHHHHHhccccCCceE
Q 023987 80 VIFEQISVIYALPRLFVASF 99 (274)
Q Consensus 80 ~l~elll~~~a~r~~~a~~i 99 (274)
.+. -+++.|++.|++-+
T Consensus 191 Tl~---~~~~ll~~~ga~vv 207 (238)
T PRK08558 191 TQR---ALLDLARQAGADVV 207 (238)
T ss_pred HHH---HHHHHHHHcCCEEE
Confidence 333 45666777777544
No 224
>COG0503 Apt Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins [Nucleotide transport and metabolism]
Probab=24.48 E-value=3.5e+02 Score=22.62 Aligned_cols=69 Identities=14% Similarity=0.120 Sum_probs=37.2
Q ss_pred cHHHHHHHHHHcCCcceeeeeEeeeC-CCcc-----------eEEEeecCCCCCCeEEEEEecCCc-hhHHHHHHHHHhc
Q 023987 25 CEELARKVAAQSDLITLQSINWRNFA-DGWP-----------NLYINSAHDIRGQHVAFLASFSSP-GVIFEQISVIYAL 91 (274)
Q Consensus 25 ~~~la~~ia~~lg~~~~~~~~~~~F~-dGE~-----------~~~v~~~~~v~g~~V~iiqs~~~~-~~l~elll~~~a~ 91 (274)
--.+|..+|..|| +++..+.-.+.. .++. .+.+.-+.--.|++|+||..+-.. ..+.. +++.+
T Consensus 64 Gi~~a~~vA~~Lg-vp~v~vRK~~kl~~~~~~~~~~~~~~~~~l~~~~~~l~~G~rVlIVDDllaTGgT~~a---~~~Ll 139 (179)
T COG0503 64 GIPLAAAVALELG-VPFVPVRKKGKLPEESVVETYYLEYGSETLELHKDALKPGDRVLIVDDLLATGGTALA---LIELL 139 (179)
T ss_pred cchhHHHHHHHhC-CCEEEEEecCCCCCcceeEEEEEeccceEEEEEhhhCCCCCEEEEEecchhcChHHHH---HHHHH
Confidence 4589999999997 877655542222 2221 111111111158889988865333 33333 34445
Q ss_pred cccCCc
Q 023987 92 PRLFVA 97 (274)
Q Consensus 92 r~~~a~ 97 (274)
+++|+.
T Consensus 140 ~~~ga~ 145 (179)
T COG0503 140 EQAGAE 145 (179)
T ss_pred HHCCCE
Confidence 556654
No 225
>cd02788 MopB_CT_NDH-1_NuoG2-N7 MopB_CT_NDH-1_NuoG2-N7: C-terminal region of the NuoG-like subunit (of the variant with a [4Fe-4S] cluster, N7) of the NADH-quinone oxidoreductase/NADH dehydrogenase-1 (NDH-1) found in various bacteria. The NDH-1 is the first energy-transducting complex in the respiratory chain and functions as a redox pump that uses the redox energy to translocate H+ ions across the membrane, resulting in a significant contribution to energy production. In Escherichia coli NDH-1, the largest subunit is encoded by the nuoG gene, and is part of the 14 distinct subunits constituting the functional enzyme. The NuoG subunit is made of two domains: the first contains three binding sites for FeS clusters (the fer2 domain), the second domain, is of unknown function or, as postulated, has lost an ancestral formate dehydrogenase activity that became redundant during the evolution of the complex I enzyme. Unique to this group, compared to the other prokaryotic and eukaryotic groups
Probab=24.29 E-value=1.6e+02 Score=21.64 Aligned_cols=41 Identities=15% Similarity=0.054 Sum_probs=28.9
Q ss_pred HHHHcCCcceeeeeEeeeCCCcceEEEeecCCCCCCeEEEEE
Q 023987 32 VAAQSDLITLQSINWRNFADGWPNLYINSAHDIRGQHVAFLA 73 (274)
Q Consensus 32 ia~~lg~~~~~~~~~~~F~dGE~~~~v~~~~~v~g~~V~iiq 73 (274)
-|+.+| +.-++.-.-.=+.|+..+.+.+.+.++...|++-.
T Consensus 37 dA~~lG-i~~Gd~V~v~s~~G~i~~~v~v~~~v~~g~V~~p~ 77 (96)
T cd02788 37 DAARLG-LADGDLVEFSLGDGTLTLPVQISKYLPAGVVGLPL 77 (96)
T ss_pred HHHHcC-CCCCCEEEEEECCeEEEEEEEECCCCCCCEEEEec
Confidence 455776 77665555556778888888888888866666544
No 226
>PF06300 Tsp45I: Tsp45I type II restriction enzyme; InterPro: IPR010443 There are four classes of restriction endonucleases: types I, II,III and IV. All types of enzymes recognise specific short DNA sequences and carry out the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. They differ in their recognition sequence, subunit composition, cleavage position, and cofactor requirements [, ], as summarised below: Type I enzymes (3.1.21.3 from EC) cleave at sites remote from recognition site; require both ATP and S-adenosyl-L-methionine to function; multifunctional protein with both restriction and methylase (2.1.1.72 from EC) activities. Type II enzymes (3.1.21.4 from EC) cleave within or at short specific distances from recognition site; most require magnesium; single function (restriction) enzymes independent of methylase. Type III enzymes (3.1.21.5 from EC) cleave at sites a short distance from recognition site; require ATP (but doesn't hydrolyse it); S-adenosyl-L-methionine stimulates reaction but is not required; exists as part of a complex with a modification methylase methylase (2.1.1.72 from EC). Type IV enzymes target methylated DNA. Type II restriction endonucleases (3.1.21.4 from EC) are components of prokaryotic DNA restriction-modification mechanisms that protect the organism against invading foreign DNA. These site-specific deoxyribonucleases catalyse the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. Of the 3000 restriction endonucleases that have been characterised, most are homodimeric or tetrameric enzymes that cleave target DNA at sequence-specific sites close to the recognition site. For homodimeric enzymes, the recognition site is usually a palindromic sequence 4-8 bp in length. Most enzymes require magnesium ions as a cofactor for catalysis. Although they can vary in their mode of recognition, many restriction endonucleases share a similar structural core comprising four beta-strands and one alpha-helix, as well as a similar mechanism of cleavage, suggesting a common ancestral origin []. However, there is still considerable diversity amongst restriction endonucleases [, ]. The target site recognition process triggers large conformational changes of the enzyme and the target DNA, leading to the activation of the catalytic centres. Like other DNA binding proteins, restriction enzymes are capable of non-specific DNA binding as well, which is the prerequisite for efficient target site location by facilitated diffusion. Non-specific binding usually does not involve interactions with the bases but only with the DNA backbone []. This entry represents type II restriction endonucleases such as Tsp45I, which recognises the DNA sequence 5' GTSAC, cleaving prior to G-1 [].
Probab=24.19 E-value=8 Score=34.13 Aligned_cols=52 Identities=10% Similarity=0.030 Sum_probs=37.4
Q ss_pred hHHHHHHHHHhccccCCceEEEEeecCCCCCccccccCCCcccHHHHHHHHhcCCCCCCCCCEEE
Q 023987 80 VIFEQISVIYALPRLFVASFTLVLPFFPTGSFERMEEEGDVATAFTMARILSNIPTSRGGPTSLV 144 (274)
Q Consensus 80 ~l~elll~~~a~r~~~a~~i~~viPY~~ysRqdr~~~~g~~~~a~~~a~ll~~~~~~~~g~d~ii 144 (274)
.|++.|+- +.....+ =||.||-|.|+....+.|-+.+.++..|.. +|.|.|+
T Consensus 55 ~li~~lL~---~~lfPik-----dsYvayLkrdksAlernP~Ti~ri~g~l~e-----mGl~~i~ 106 (261)
T PF06300_consen 55 KLIKSLLN---LDLFPIK-----DSYVAYLKRDKSALERNPETINRICGRLYE-----MGLDKIY 106 (261)
T ss_pred HHHHHHHh---cccCccC-----cchHHHHHhhHHHHhcCcHHHHHHHHHHHH-----HhHHHHH
Confidence 46666654 2222233 369999999998878899999999998875 5776553
No 227
>PF06574 FAD_syn: FAD synthetase; InterPro: IPR015864 Riboflavin is converted into catalytically active cofactors (FAD and FMN) by the actions of riboflavin kinase (2.7.1.26 from EC), which converts it into FMN, and FAD synthetase (2.7.7.2 from EC), which adenylates FMN to FAD. Eukaryotes usually have two separate enzymes, while most prokaryotes have a single bifunctional protein that can carry out both catalyses, although exceptions occur in both cases. While eukaryotic monofunctional riboflavin kinase is orthologous to the bifunctional prokaryotic enzyme [], the monofunctional FAD synthetase differs from its prokaryotic counterpart, and is instead related to the PAPS-reductase family []. The bacterial FAD synthetase that is part of the bifunctional enzyme has remote similarity to nucleotidyl transferases and, hence, it may be involved in the adenylylation reaction of FAD synthetases []. This entry represents prokaryotic-type FAD synthetase, which occurs primarily as part of a bifunctional enzyme.; GO: 0003919 FMN adenylyltransferase activity, 0009231 riboflavin biosynthetic process; PDB: 2X0K_B 3OP1_B 1T6Z_A 2I1L_A 1T6Y_B 1T6X_B 1S4M_A 1MRZ_A.
Probab=24.16 E-value=3.8e+02 Score=21.89 Aligned_cols=105 Identities=10% Similarity=0.070 Sum_probs=49.6
Q ss_pred CeEEEEEecCCch-hHHHHH-HHHHhccccCCceEEEEeecCC--CCCccccccCCCcccHHHHHHHHhcCCCCCCCCCE
Q 023987 67 QHVAFLASFSSPG-VIFEQI-SVIYALPRLFVASFTLVLPFFP--TGSFERMEEEGDVATAFTMARILSNIPTSRGGPTS 142 (274)
Q Consensus 67 ~~V~iiqs~~~~~-~l~ell-l~~~a~r~~~a~~i~~viPY~~--ysRqdr~~~~g~~~~a~~~a~ll~~~~~~~~g~d~ 142 (274)
+.++.+..+..-. =..+|+ .+++.+++.+...+.+...--| +-+.+.. +....+...-.++|++ .|+|.
T Consensus 6 ~~~v~iG~FDGvH~GHq~Li~~~~~~a~~~~~~~~v~tF~~~P~~~~~~~~~--~~~l~s~~ek~~~l~~-----~Gvd~ 78 (157)
T PF06574_consen 6 KSVVAIGNFDGVHLGHQKLIKKAVEIAKEKGLKSVVLTFDPHPKEVLNPDKP--PKLLTSLEEKLELLES-----LGVDY 78 (157)
T ss_dssp -EEEEES--TT--HHHHHHHHHHHHHHHHCT-EEEEEEESS-CHHHHSCTCC--GGBSS-HHHHHHHHHH-----TTESE
T ss_pred CcEEEEeCCCCccHHHHHHHHHHhhhhhhcccceEEEEcccCHHHHhcCCCc--ccCCCCHHHHHHHHHH-----cCCCE
Confidence 4455555543321 133333 3555566666555444332222 1121221 2235667777888986 59999
Q ss_pred EEEEeCCchhhhcccCCCCcccccchHHHHHHH-HhcCCCCCCeEEEecC
Q 023987 143 LVIYDIHALQERFYFSDHVLPLFETGIPLLKQR-LHQLPDANNIVIAFPD 191 (274)
Q Consensus 143 ii~vdlH~~~~~~ff~~~~~~l~~~~~~~la~~-l~~~~~~~~~viV~pd 191 (274)
++.+|. +....++ ....+.+. |.+.++ -.-++|+.|
T Consensus 79 ~~~~~F---------~~~~~~l---s~~~Fi~~iL~~~l~-~~~ivvG~D 115 (157)
T PF06574_consen 79 VIVIPF---------TEEFANL---SPEDFIEKILKEKLN-VKHIVVGED 115 (157)
T ss_dssp EEEE-C---------CCHHCCS----HHHHHHHHCCCHCT-EEEEEEETT
T ss_pred EEEecc---------hHHHHcC---CHHHHHHHHHHhcCC-ccEEEEccC
Confidence 999983 3222232 24455554 543321 235788888
No 228
>TIGR01743 purR_Bsub pur operon repressor, Bacillus subtilis type. This model represents the puring operon repressor PurR of low-GC Gram-positive bacteria. This homodimeric repressor contains a large region homologous to phosphoribosyltransferases and is inhibited by 5-phosphoribosyl 1-pyrophosphate.
Probab=23.86 E-value=4.4e+02 Score=23.83 Aligned_cols=71 Identities=18% Similarity=0.210 Sum_probs=39.9
Q ss_pred CCcHHHHHHHHHHcCCcceeeeeEe-eeCCCcc--------------eEEEeecCCCCCCeEEEEEecCCc-hhHHHHHH
Q 023987 23 VECEELARKVAAQSDLITLQSINWR-NFADGWP--------------NLYINSAHDIRGQHVAFLASFSSP-GVIFEQIS 86 (274)
Q Consensus 23 ~~~~~la~~ia~~lg~~~~~~~~~~-~F~dGE~--------------~~~v~~~~~v~g~~V~iiqs~~~~-~~l~elll 86 (274)
..--+||..+|..|| +++.-+.-. +...|++ .+.+.-..-.+|++|+||...-.. ..+.+
T Consensus 137 tkGIpLA~avA~~L~-vp~vivRK~~K~t~g~~vs~nY~sgs~~~ie~m~l~k~~l~~G~rVLIVDDv~~TGgTi~a--- 212 (268)
T TIGR01743 137 TKGIPLAYAVASVLN-VPLVIVRKDSKVTEGSTVSINYVSGSSNRIQTMSLAKRSLKTGSKVLIIDDFMKAGGTING--- 212 (268)
T ss_pred cchHHHHHHHHHHHC-CCEEEEEECCCCCCCCcEEEEEEcccCccceEEEEehhhCCCcCEEEEEeeecccCHHHHH---
Confidence 556699999999996 886544432 1112321 111111111368999999875443 34444
Q ss_pred HHHhccccCCc
Q 023987 87 VIYALPRLFVA 97 (274)
Q Consensus 87 ~~~a~r~~~a~ 97 (274)
+++.+++.|++
T Consensus 213 ~i~Ll~e~Ga~ 223 (268)
T TIGR01743 213 MINLLDEFDAE 223 (268)
T ss_pred HHHHHHHCCCE
Confidence 44555666664
No 229
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=23.72 E-value=1.6e+02 Score=21.99 Aligned_cols=37 Identities=19% Similarity=0.111 Sum_probs=26.1
Q ss_pred CCCCCCeEEEEeccccchHHHHHHHHHHHhCCCcEEEEEEec
Q 023987 226 GNPAGCHVVIVDDLVQSGGTLIECQVLSYLLPAVLLKMCVSE 267 (274)
Q Consensus 226 ~~v~gk~vlIVDDIi~TG~Tl~~aa~~Lk~~GA~~V~~~~tH 267 (274)
-+++||+|+||= .|.--..-++.|.+.|| +|.+++..
T Consensus 3 l~l~~~~vlVvG----gG~va~~k~~~Ll~~gA-~v~vis~~ 39 (103)
T PF13241_consen 3 LDLKGKRVLVVG----GGPVAARKARLLLEAGA-KVTVISPE 39 (103)
T ss_dssp E--TT-EEEEEE----ESHHHHHHHHHHCCCTB-EEEEEESS
T ss_pred EEcCCCEEEEEC----CCHHHHHHHHHHHhCCC-EEEEECCc
Confidence 368999999874 47777778889999996 57777654
No 230
>TIGR03865 PQQ_CXXCW PQQ-dependent catabolism-associated CXXCW motif protein. Members of this protein family have a CXXXCW motif, consistent with a possible role in redox cofactor binding. This protein family shows strong relationships by phylogenetic profiling and conserved gene neighborhoods with a transport system for alcohols metabolized by PQQ-dependent enzymes.
Probab=23.61 E-value=1.4e+02 Score=24.58 Aligned_cols=34 Identities=3% Similarity=-0.233 Sum_probs=26.7
Q ss_pred CCCCeEEEEeccccchH-HHHHHHHHHHhCCCcEEEEE
Q 023987 228 PAGCHVVIVDDLVQSGG-TLIECQVLSYLLPAVLLKMC 264 (274)
Q Consensus 228 v~gk~vlIVDDIi~TG~-Tl~~aa~~Lk~~GA~~V~~~ 264 (274)
-+++.|++++. +|. .-..++..|+..|-++|+.+
T Consensus 114 ~~d~~IVvYC~---~G~~~S~~aa~~L~~~G~~~V~~l 148 (162)
T TIGR03865 114 DKDRPLVFYCL---ADCWMSWNAAKRALAYGYSNVYWY 148 (162)
T ss_pred CCCCEEEEEEC---CCCHHHHHHHHHHHhcCCcceEEe
Confidence 37889999965 565 45668999999999988754
No 231
>TIGR01564 S_layer_MJ S-layer protein, MJ0822 family. This model represents one of several families of proteins associated with the formation of prokaryotic S-layers. Members of this family are found in archaeal species, including Pyrococcus horikoshii (split into two tandem reading frames), Methanococcus jannaschii, and related species. Some local similarity can be found to other S-layer protein families.
Probab=23.60 E-value=2e+02 Score=28.88 Aligned_cols=58 Identities=14% Similarity=0.143 Sum_probs=42.6
Q ss_pred CCCCcEEEEecCCcHHHHHHHHHHcCCcceeeeeEeeeCCCcceEEEeecCCCCCCeEEEEEecCCc
Q 023987 12 SQKKQVHLFYCVECEELARKVAAQSDLITLQSINWRNFADGWPNLYINSAHDIRGQHVAFLASFSSP 78 (274)
Q Consensus 12 ~~~~~~~i~~~~~~~~la~~ia~~lg~~~~~~~~~~~F~dGE~~~~v~~~~~v~g~~V~iiqs~~~~ 78 (274)
+..+++.|+.|+-...|.+++...++ +++. .-+.|+ ...+.....|.+|+|+....+.
T Consensus 501 ~~~~nlILVGGPv~N~ltk~l~~~~~-i~i~-----n~~p~~---~~~~~~~~ng~~vlvvAG~dr~ 558 (571)
T TIGR01564 501 NADKNLILVGGPVANKLTKELADAGK-VPKT-----ESSPAT---YAEKCGAANGYDVLVVAGGDRE 558 (571)
T ss_pred cCCCCEEEECCcchhHHHHHHHhcCc-eecc-----CCCcce---eeeeccccCCceEEEEeCCChH
Confidence 45689999999999999999998875 6554 455563 2444456678999999865443
No 232
>PF02225 PA: PA domain; InterPro: IPR003137 The PA (Protease associated) domain is found as an insert domain in diverse proteases, which include the MEROPS peptidase families A22B, M28, and S8A []. The PA domain is also found in a plant vacuolar sorting receptor O22925 from SWISSPROT and members of the RZF family, e.g. O43567 from SWISSPROT.; PDB: 3EIF_A 1XF1_B 3BXM_A 2C6P_A 1Z8L_C 3SJF_A 3BHX_A 2C6G_A 3D7F_A 2XEG_A ....
Probab=23.44 E-value=1.6e+02 Score=21.36 Aligned_cols=37 Identities=8% Similarity=-0.099 Sum_probs=26.7
Q ss_pred eCCCCCCeEEEEeccccchHHHHHHHHHHHhCCCcEEEEEE
Q 023987 225 EGNPAGCHVVIVDDLVQSGGTLIECQVLSYLLPAVLLKMCV 265 (274)
Q Consensus 225 ~~~v~gk~vlIVDDIi~TG~Tl~~aa~~Lk~~GA~~V~~~~ 265 (274)
..+++||-||+-..-+ ++..-++..+++||.-|.++-
T Consensus 29 ~~~~~gkIvlv~rg~~----~~~~k~~~a~~~GA~gvIi~~ 65 (101)
T PF02225_consen 29 GSDVKGKIVLVERGSC----SFDDKVRNAQKAGAKGVIIYN 65 (101)
T ss_dssp TSTCTTSEEEEESTSS----CHHHHHHHHHHTTESEEEEE-
T ss_pred CccccceEEEEecCCC----CHHHHHHHHHHcCCEEEEEEe
Confidence 3478999888733333 677777888899999887765
No 233
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=23.27 E-value=99 Score=25.25 Aligned_cols=30 Identities=7% Similarity=-0.107 Sum_probs=24.6
Q ss_pred ccccchHHHHHHHHHHHhCCCcEEEEEEec
Q 023987 238 DLVQSGGTLIECQVLSYLLPAVLLKMCVSE 267 (274)
Q Consensus 238 DIi~TG~Tl~~aa~~Lk~~GA~~V~~~~tH 267 (274)
|..++..-+..|.+.|+.+|++.|+...++
T Consensus 100 Dl~~~~~~i~~a~~~L~~aG~~~if~vS~~ 129 (143)
T PF10662_consen 100 DLPSDDANIERAKKWLKNAGVKEIFEVSAV 129 (143)
T ss_pred cCccchhhHHHHHHHHHHcCCCCeEEEECC
Confidence 566677889999999999999999665544
No 234
>cd04822 PA_M28_1_3 PA_M28_1_3: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 3. A subgroup of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subgroups; relatively litt
Probab=23.21 E-value=1.6e+02 Score=24.19 Aligned_cols=40 Identities=13% Similarity=-0.049 Sum_probs=28.5
Q ss_pred CCCCCCeEEEEecc--------ccch------HHHHHHHHHHHhCCCcEEEEEE
Q 023987 226 GNPAGCHVVIVDDL--------VQSG------GTLIECQVLSYLLPAVLLKMCV 265 (274)
Q Consensus 226 ~~v~gk~vlIVDDI--------i~TG------~Tl~~aa~~Lk~~GA~~V~~~~ 265 (274)
.|++||-||+..+. ...| .++..=++...++||.-|.++.
T Consensus 44 iDVkGKIVlv~~g~P~~~~~~~~~~~~~~~~~~~~~~K~~~A~~~GA~aVIv~~ 97 (151)
T cd04822 44 LDVKGKIVLVLRHEPQEDDANSRFNGPGLTRHAGLRYKATNARRHGAAAVIVVN 97 (151)
T ss_pred CCCCCeEEEEEcCCcccccccccccccccccccCHHHHHHHHHHCCCeEEEEEe
Confidence 48999998887663 1111 3566777888899999887664
No 235
>PF13399 LytR_C: LytR cell envelope-related transcriptional attenuator
Probab=23.04 E-value=2.5e+02 Score=20.22 Aligned_cols=23 Identities=26% Similarity=0.348 Sum_probs=19.0
Q ss_pred CcEEEEecCCcHHHHHHHHHHcC
Q 023987 15 KQVHLFYCVECEELARKVAAQSD 37 (274)
Q Consensus 15 ~~~~i~~~~~~~~la~~ia~~lg 37 (274)
..-.|+.++.+..-|+.|++.||
T Consensus 43 ~~t~I~y~~~~~~~A~~la~~l~ 65 (90)
T PF13399_consen 43 ETTTIYYGPGDEAAARELAAALG 65 (90)
T ss_pred CCEEEEECCCCHHHHHHHHHHCC
Confidence 45567778888999999999997
No 236
>cd04795 SIS SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=22.87 E-value=2.1e+02 Score=19.80 Aligned_cols=77 Identities=12% Similarity=0.007 Sum_probs=42.8
Q ss_pred EEEecCCcHHHHHHHHHHcCCcceeeeeEeeeCCCcceEEEeecCCCCCCeEEEEEecCCc-hhHHHHHHHHHhccccCC
Q 023987 18 HLFYCVECEELARKVAAQSDLITLQSINWRNFADGWPNLYINSAHDIRGQHVAFLASFSSP-GVIFEQISVIYALPRLFV 96 (274)
Q Consensus 18 ~i~~~~~~~~la~~ia~~lg~~~~~~~~~~~F~dGE~~~~v~~~~~v~g~~V~iiqs~~~~-~~l~elll~~~a~r~~~a 96 (274)
.+++..++..+|...+..|. ++....+.-.++.+... .........+|++++=|.+.. .++.+ +++.+|+.|+
T Consensus 2 ~i~g~G~s~~~a~~~~~~l~--~~~~~~~~~~~~~~~~~-~~~~~~~~~~d~~i~iS~sg~t~~~~~---~~~~a~~~g~ 75 (87)
T cd04795 2 FVIGIGGSGAIAAYFALELL--ELTGIEVVALIATELEH-ASLLSLLRKGDVVIALSYSGRTEELLA---ALEIAKELGI 75 (87)
T ss_pred EEEEcCHHHHHHHHHHHHHh--cccCCceEEeCCcHHHH-HHHHhcCCCCCEEEEEECCCCCHHHHH---HHHHHHHcCC
Confidence 45555567888888888884 34234444445543211 110123445788888776543 33433 5566777787
Q ss_pred ceEE
Q 023987 97 ASFT 100 (274)
Q Consensus 97 ~~i~ 100 (274)
+-+.
T Consensus 76 ~ii~ 79 (87)
T cd04795 76 PVIA 79 (87)
T ss_pred eEEE
Confidence 5443
No 237
>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional
Probab=22.77 E-value=2.2e+02 Score=25.75 Aligned_cols=79 Identities=16% Similarity=0.069 Sum_probs=46.5
Q ss_pred CcEEEEecCCcHHHHHHHHHHcCCcceeeeeEeeeCCCcceEEEeecCCCCCCeEEEEEecCCchhHHHHHHHHHhcccc
Q 023987 15 KQVHLFYCVECEELARKVAAQSDLITLQSINWRNFADGWPNLYINSAHDIRGQHVAFLASFSSPGVIFEQISVIYALPRL 94 (274)
Q Consensus 15 ~~~~i~~~~~~~~la~~ia~~lg~~~~~~~~~~~F~dGE~~~~v~~~~~v~g~~V~iiqs~~~~~~l~elll~~~a~r~~ 94 (274)
+.+.+|+..+|..+|+.++.+|. .++..... +.|.+. .... .......|++|+-|.+.. --+++.++..+|+.
T Consensus 43 ~~I~i~G~G~S~~~A~~~~~~l~--~~g~~~~~-~~~~~~-~~~~-~~~~~~~d~~i~iS~sG~--t~~~~~~~~~ak~~ 115 (321)
T PRK11543 43 GKVVVSGIGKSGHIGKKIAATLA--STGTPAFF-VHPAEA-LHGD-LGMIESRDVMLFISYSGG--AKELDLIIPRLEDK 115 (321)
T ss_pred CcEEEEecChhHHHHHHHHHHHH--cCCCceee-cChHHH-hhCC-cCccCCCCEEEEEeCCCC--cHHHHHHHHHHHHc
Confidence 47888887788899999998883 34333221 222221 1111 134455799999887643 22344456677777
Q ss_pred CCceEE
Q 023987 95 FVASFT 100 (274)
Q Consensus 95 ~a~~i~ 100 (274)
|++-|.
T Consensus 116 g~~vI~ 121 (321)
T PRK11543 116 SIALLA 121 (321)
T ss_pred CCeEEE
Confidence 765443
No 238
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=22.48 E-value=1.3e+02 Score=24.67 Aligned_cols=37 Identities=14% Similarity=0.115 Sum_probs=28.8
Q ss_pred CCCCCeEEEEeccccchHHHHHHHHHHHhCCCcEEEEEEece
Q 023987 227 NPAGCHVVIVDDLVQSGGTLIECQVLSYLLPAVLLKMCVSEF 268 (274)
Q Consensus 227 ~v~gk~vlIVDDIi~TG~Tl~~aa~~Lk~~GA~~V~~~~tH~ 268 (274)
+.+||+|+|| -+|.|-..++..|.+.| ++|..+.=+.
T Consensus 164 ~~~~k~V~VV----G~G~SA~d~a~~l~~~g-~~V~~~~R~~ 200 (203)
T PF13738_consen 164 DFKGKRVVVV----GGGNSAVDIAYALAKAG-KSVTLVTRSP 200 (203)
T ss_dssp GCTTSEEEEE------SHHHHHHHHHHTTTC-SEEEEEESS-
T ss_pred hcCCCcEEEE----cChHHHHHHHHHHHhhC-CEEEEEecCC
Confidence 6789999965 79999999999999988 8888876543
No 239
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=22.39 E-value=1.9e+02 Score=26.04 Aligned_cols=35 Identities=20% Similarity=0.235 Sum_probs=27.1
Q ss_pred CCCCCeEEEEeccccchHHHHHHHHHHHhCCCcEEEEEE
Q 023987 227 NPAGCHVVIVDDLVQSGGTLIECQVLSYLLPAVLLKMCV 265 (274)
Q Consensus 227 ~v~gk~vlIVDDIi~TG~Tl~~aa~~Lk~~GA~~V~~~~ 265 (274)
+++||+++|+ =+||.-..++..|.+.|+++|.++.
T Consensus 123 ~~~~k~vlI~----GAGGagrAia~~La~~G~~~V~I~~ 157 (289)
T PRK12548 123 DVKGKKLTVI----GAGGAATAIQVQCALDGAKEITIFN 157 (289)
T ss_pred CcCCCEEEEE----CCcHHHHHHHHHHHHCCCCEEEEEe
Confidence 4678888755 4578888888888889998887764
No 240
>PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=22.38 E-value=4.8e+02 Score=23.03 Aligned_cols=121 Identities=14% Similarity=0.017 Sum_probs=61.3
Q ss_pred HHHHHHHHhcCCCCCCCCCEEEEEeCCchh-hhcccCCCCcccccchHHHHHHHHhcCCCCCCeEEEecCCChHHHHHHh
Q 023987 123 AFTMARILSNIPTSRGGPTSLVIYDIHALQ-ERFYFSDHVLPLFETGIPLLKQRLHQLPDANNIVIAFPDDGAWKRFHKM 201 (274)
Q Consensus 123 a~~~a~ll~~~~~~~~g~d~ii~vdlH~~~-~~~ff~~~~~~l~~~~~~~la~~l~~~~~~~~~viV~pd~G~~~ra~~~ 201 (274)
.-.+|+.++. .|++.++.+|+.... .++- | . .+.+.+.+. ...++.++-.......+..+
T Consensus 32 p~~~a~~~~~-----~g~~~l~i~Dl~~~~~~~~~-n----------~-~~i~~i~~~--~~~pv~~gGGi~s~~d~~~l 92 (258)
T PRK01033 32 PINAVRIFNE-----KEVDELIVLDIDASKRGSEP-N----------Y-ELIENLASE--CFMPLCYGGGIKTLEQAKKI 92 (258)
T ss_pred HHHHHHHHHH-----cCCCEEEEEECCCCcCCCcc-c----------H-HHHHHHHHh--CCCCEEECCCCCCHHHHHHH
Confidence 3367788875 589999999998743 2221 1 1 223333332 23456666655566666555
Q ss_pred hc-CCCeEEEEEEEeCC-------------ceEEEeeeCCCC----CCeEEEEecc-ccchHHHHHHHHHHHhCCCcEEE
Q 023987 202 LD-HFPTVVCAKVREGD-------------KRIVRIKEGNPA----GCHVVIVDDL-VQSGGTLIECQVLSYLLPAVLLK 262 (274)
Q Consensus 202 a~-~~~~~~~~k~R~~~-------------~~i~~~~~~~v~----gk~vlIVDDI-i~TG~Tl~~aa~~Lk~~GA~~V~ 262 (274)
.. +.....+...-..+ ..+. ..-|++ |+.-+.++.= -.+..+..+.++.+.+.|+..+.
T Consensus 93 ~~~G~~~vvigs~~~~~~~~~~~~~~~~~~~~i~--vsiD~k~g~~~~~~v~~~gw~~~~~~~~~e~~~~~~~~g~~~ii 170 (258)
T PRK01033 93 FSLGVEKVSINTAALEDPDLITEAAERFGSQSVV--VSIDVKKNLGGKFDVYTHNGTKKLKKDPLELAKEYEALGAGEIL 170 (258)
T ss_pred HHCCCCEEEEChHHhcCHHHHHHHHHHhCCCcEE--EEEEEecCCCCcEEEEEcCCeecCCCCHHHHHHHHHHcCCCEEE
Confidence 43 44332222111000 1111 111222 2222222211 12456678888999999998776
Q ss_pred EE
Q 023987 263 MC 264 (274)
Q Consensus 263 ~~ 264 (274)
+-
T Consensus 171 ~~ 172 (258)
T PRK01033 171 LN 172 (258)
T ss_pred EE
Confidence 54
No 241
>PRK14027 quinate/shikimate dehydrogenase; Provisional
Probab=22.23 E-value=1.5e+02 Score=26.82 Aligned_cols=35 Identities=20% Similarity=0.012 Sum_probs=28.5
Q ss_pred CCCCCeEEEEeccccchHHHHHHHHHHHhCCCcEEEEEE
Q 023987 227 NPAGCHVVIVDDLVQSGGTLIECQVLSYLLPAVLLKMCV 265 (274)
Q Consensus 227 ~v~gk~vlIVDDIi~TG~Tl~~aa~~Lk~~GA~~V~~~~ 265 (274)
+++||+++| +=+||+-..++-.|.+.|+++|+++-
T Consensus 124 ~~~~k~vli----lGaGGaarAi~~aL~~~g~~~i~i~n 158 (283)
T PRK14027 124 NAKLDSVVQ----VGAGGVGNAVAYALVTHGVQKLQVAD 158 (283)
T ss_pred CcCCCeEEE----ECCcHHHHHHHHHHHHCCCCEEEEEc
Confidence 466888875 46899999999999999999887763
No 242
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=22.15 E-value=1.3e+02 Score=26.51 Aligned_cols=39 Identities=10% Similarity=-0.023 Sum_probs=28.2
Q ss_pred eeeCCCCCCeEEEEeccccchHHHHHH-HHHHHhCCCcEEEEEEec
Q 023987 223 IKEGNPAGCHVVIVDDLVQSGGTLIEC-QVLSYLLPAVLLKMCVSE 267 (274)
Q Consensus 223 ~~~~~v~gk~vlIVDDIi~TG~Tl~~a-a~~Lk~~GA~~V~~~~tH 267 (274)
++.-+++||+|||| .||.+..- ++.|.+.||+ |.+++.+
T Consensus 18 pi~l~~~~~~VLVV-----GGG~VA~RK~~~Ll~~gA~-VtVVap~ 57 (223)
T PRK05562 18 FISLLSNKIKVLII-----GGGKAAFIKGKTFLKKGCY-VYILSKK 57 (223)
T ss_pred eeEEECCCCEEEEE-----CCCHHHHHHHHHHHhCCCE-EEEEcCC
Confidence 34567889999998 77776654 6777788866 6666654
No 243
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=22.12 E-value=1.7e+02 Score=29.75 Aligned_cols=37 Identities=24% Similarity=0.354 Sum_probs=30.9
Q ss_pred CCCCCeEEEEeccccchHHHHHHHHHHHhCCCcEEEEEEec
Q 023987 227 NPAGCHVVIVDDLVQSGGTLIECQVLSYLLPAVLLKMCVSE 267 (274)
Q Consensus 227 ~v~gk~vlIVDDIi~TG~Tl~~aa~~Lk~~GA~~V~~~~tH 267 (274)
+..||+|+||- .|.|-..++..+.+.|+++|.++.-+
T Consensus 465 ~~~gk~VvVIG----gG~~a~d~A~~a~r~ga~~Vt~i~~~ 501 (654)
T PRK12769 465 NTAGLNVVVLG----GGDTAMDCVRTALRHGASNVTCAYRR 501 (654)
T ss_pred cCCCCeEEEEC----CcHHHHHHHHHHHHcCCCeEEEeEec
Confidence 46789999985 88888899999899999999876644
No 244
>PRK12749 quinate/shikimate dehydrogenase; Reviewed
Probab=21.93 E-value=1.6e+02 Score=26.73 Aligned_cols=36 Identities=14% Similarity=0.108 Sum_probs=29.3
Q ss_pred CCCCCCeEEEEeccccchHHHHHHHHHHHhCCCcEEEEEE
Q 023987 226 GNPAGCHVVIVDDLVQSGGTLIECQVLSYLLPAVLLKMCV 265 (274)
Q Consensus 226 ~~v~gk~vlIVDDIi~TG~Tl~~aa~~Lk~~GA~~V~~~~ 265 (274)
.+++||+++|+ =+||+-..++-.|...|+++|.++.
T Consensus 120 ~~~~~k~vlvl----GaGGaarAi~~~l~~~g~~~i~i~n 155 (288)
T PRK12749 120 FDIKGKTMVLL----GAGGASTAIGAQGAIEGLKEIKLFN 155 (288)
T ss_pred CCcCCCEEEEE----CCcHHHHHHHHHHHHCCCCEEEEEe
Confidence 36788988865 5899988888888889999988874
No 245
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=21.88 E-value=1.3e+02 Score=24.58 Aligned_cols=32 Identities=16% Similarity=0.102 Sum_probs=24.6
Q ss_pred CeEEEEEecCCchhHHHHH-HHHHhccccCCceEE
Q 023987 67 QHVAFLASFSSPGVIFEQI-SVIYALPRLFVASFT 100 (274)
Q Consensus 67 ~~V~iiqs~~~~~~l~ell-l~~~a~r~~~a~~i~ 100 (274)
-||+.++|++.. .++|. -++++||+.|++.|.
T Consensus 64 v~vIgvSsl~g~--h~~l~~~lve~lre~G~~~i~ 96 (143)
T COG2185 64 VDVIGVSSLDGG--HLTLVPGLVEALREAGVEDIL 96 (143)
T ss_pred CCEEEEEeccch--HHHHHHHHHHHHHHhCCcceE
Confidence 689999988643 33333 589999999999998
No 246
>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated
Probab=21.88 E-value=3.7e+02 Score=22.92 Aligned_cols=124 Identities=11% Similarity=0.012 Sum_probs=62.4
Q ss_pred cHHHHHHHHhcCCCCCCCCCEEEEEeCCchhhhcccCCCCcccccchHHHHHHHHhcCCCCCCeEEEecCCChHHHHHHh
Q 023987 122 TAFTMARILSNIPTSRGGPTSLVIYDIHALQERFYFSDHVLPLFETGIPLLKQRLHQLPDANNIVIAFPDDGAWKRFHKM 201 (274)
Q Consensus 122 ~a~~~a~ll~~~~~~~~g~d~ii~vdlH~~~~~~ff~~~~~~l~~~~~~~la~~l~~~~~~~~~viV~pd~G~~~ra~~~ 201 (274)
..-.+|+.+++ .|++.++.+|+.. ...+. . . .-.+.+.+.+. ...++.++-.......++.+
T Consensus 31 ~~~~~a~~~~~-----~g~~~i~v~dld~-~~~g~-~---~------~~~~i~~i~~~--~~~pv~~~GGI~~~ed~~~~ 92 (233)
T PRK00748 31 DPVAQAKAWED-----QGAKWLHLVDLDG-AKAGK-P---V------NLELIEAIVKA--VDIPVQVGGGIRSLETVEAL 92 (233)
T ss_pred CHHHHHHHHHH-----cCCCEEEEEeCCc-cccCC-c---c------cHHHHHHHHHH--CCCCEEEcCCcCCHHHHHHH
Confidence 34467888875 5999999999832 11221 0 1 11334444343 23456665444455555554
Q ss_pred hc-CCCeEEEEEEEeCCc--------eE--EEeeeCCCCCCeEEEEecc-ccchHHHHHHHHHHHhCCCcEEEEE
Q 023987 202 LD-HFPTVVCAKVREGDK--------RI--VRIKEGNPAGCHVVIVDDL-VQSGGTLIECQVLSYLLPAVLLKMC 264 (274)
Q Consensus 202 a~-~~~~~~~~k~R~~~~--------~i--~~~~~~~v~gk~vlIVDDI-i~TG~Tl~~aa~~Lk~~GA~~V~~~ 264 (274)
.. +++...+...-..+. .. .....-|+++..+. +..- -.+..+..+.++.+.+.|+..+.+.
T Consensus 93 ~~~Ga~~vilg~~~l~~~~~l~ei~~~~~~~i~vsid~k~~~v~-~~g~~~~~~~~~~e~~~~~~~~g~~~ii~~ 166 (233)
T PRK00748 93 LDAGVSRVIIGTAAVKNPELVKEACKKFPGKIVVGLDARDGKVA-TDGWLETSGVTAEDLAKRFEDAGVKAIIYT 166 (233)
T ss_pred HHcCCCEEEECchHHhCHHHHHHHHHHhCCCceeeeeccCCEEE-EccCeecCCCCHHHHHHHHHhcCCCEEEEe
Confidence 43 454333321110000 00 01122355554433 2222 2245567889999999999976554
No 247
>PF03681 UPF0150: Uncharacterised protein family (UPF0150); InterPro: IPR005357 This family of small proteins is uncharacterised. In Q9A3L8 from SWISSPROT this domain is found next to a DNA binding helix-turn-helix domain IPR002145 from INTERPRO, which suggests that this is some kind of ligand binding domain.; PDB: 2DSY_C 2YZT_A 3KWR_A.
Probab=21.57 E-value=27 Score=22.42 Aligned_cols=19 Identities=21% Similarity=0.038 Sum_probs=16.3
Q ss_pred ccccchHHHHHHHHHHHhC
Q 023987 238 DLVQSGGTLIECQVLSYLL 256 (274)
Q Consensus 238 DIi~TG~Tl~~aa~~Lk~~ 256 (274)
++++.|.|+.+|.+.++++
T Consensus 23 g~~t~G~t~eea~~~~~ea 41 (48)
T PF03681_consen 23 GCFTQGDTLEEALENAKEA 41 (48)
T ss_dssp TCEEEESSHHHHHHHHHHH
T ss_pred ChhhcCCCHHHHHHHHHHH
Confidence 5689999999999998863
No 248
>cd05006 SIS_GmhA Phosphoheptose isomerase is a member of the SIS (Sugar ISomerase) superfamily. Phosphoheptose isomerase catalyzes the isomerization of sedoheptulose 7-phosphate into D-glycero-D-mannoheptose 7-phosphate. This is the first step of the biosynthesis of gram-negative bacteria inner core lipopolysaccharide precursor, L-glycero-D-mannoheptose (Gmh).
Probab=21.54 E-value=4.5e+02 Score=21.42 Aligned_cols=83 Identities=10% Similarity=-0.098 Sum_probs=44.9
Q ss_pred CCCcEEEEecCCcHHHHHHHHHHcCCcce----eeeeEeeeCCCcceEEEe-------------ecCCCCCCeEEEEEec
Q 023987 13 QKKQVHLFYCVECEELARKVAAQSDLITL----QSINWRNFADGWPNLYIN-------------SAHDIRGQHVAFLASF 75 (274)
Q Consensus 13 ~~~~~~i~~~~~~~~la~~ia~~lg~~~~----~~~~~~~F~dGE~~~~v~-------------~~~~v~g~~V~iiqs~ 75 (274)
..+.+.+++..+|..+|...+..|. ... ......-+++.-.+.... ....++-.|++|+-|.
T Consensus 32 ~~~~I~i~G~G~S~~~A~~~~~~l~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~I~iS~ 110 (177)
T cd05006 32 NGGKILICGNGGSAADAQHFAAELV-KRFEKERPGLPAIALTTDTSILTAIANDYGYEEVFSRQVEALGQPGDVLIGIST 110 (177)
T ss_pred CCCEEEEEeCcHHHHHHHHHHHHHh-chhccCCCCCceEeccCCHHHHHHHhccCCHHHHHHHHHHHhCCCCCEEEEEeC
Confidence 3567888877778888888887662 211 112222233110000000 0113556899988887
Q ss_pred CCc-hhHHHHHHHHHhccccCCceE
Q 023987 76 SSP-GVIFEQISVIYALPRLFVASF 99 (274)
Q Consensus 76 ~~~-~~l~elll~~~a~r~~~a~~i 99 (274)
+.. .++++ ++..||+.|++-|
T Consensus 111 SG~t~~~i~---~~~~ak~~Ga~vI 132 (177)
T cd05006 111 SGNSPNVLK---ALEAAKERGMKTI 132 (177)
T ss_pred CCCCHHHHH---HHHHHHHCCCEEE
Confidence 654 34444 5566777786543
No 249
>PF02698 DUF218: DUF218 domain; InterPro: IPR003848 This domain of unknown function is found in several uncharacterised proteins.; PDB: 3CA8_A.
Probab=21.53 E-value=1.3e+02 Score=23.95 Aligned_cols=40 Identities=5% Similarity=-0.153 Sum_probs=24.1
Q ss_pred CCCCeEEEEeccccchHHHHHHHHHHHhCCCcEEEEEEec
Q 023987 228 PAGCHVVIVDDLVQSGGTLIECQVLSYLLPAVLLKMCVSE 267 (274)
Q Consensus 228 v~gk~vlIVDDIi~TG~Tl~~aa~~Lk~~GA~~V~~~~tH 267 (274)
+....+++-+---+|-..+..+.+.+++.|.++|.+++..
T Consensus 68 vp~~~I~~e~~s~~T~ena~~~~~~~~~~~~~~iilVT~~ 107 (155)
T PF02698_consen 68 VPEERIILEPKSTNTYENARFSKRLLKERGWQSIILVTSP 107 (155)
T ss_dssp --GGGEEEE----SHHHHHHHHHHHHHT-SSS-EEEE--C
T ss_pred cchheeEccCCCCCHHHHHHHHHHHHHhhcCCeEEEECCH
Confidence 3344666667777888889999999999999988866543
No 250
>cd04821 PA_M28_1_2 PA_M28_1_2: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 2. A subgroup of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subgroups; relatively litt
Probab=21.53 E-value=2e+02 Score=23.82 Aligned_cols=41 Identities=17% Similarity=-0.060 Sum_probs=27.6
Q ss_pred CCCCCCeEEEEeccc---------cch------HHHHHHHHHHHhCCCcEEEEEEe
Q 023987 226 GNPAGCHVVIVDDLV---------QSG------GTLIECQVLSYLLPAVLLKMCVS 266 (274)
Q Consensus 226 ~~v~gk~vlIVDDIi---------~TG------~Tl~~aa~~Lk~~GA~~V~~~~t 266 (274)
-|++||-|++..+-- ..| ++...=.+.+.++||.-|..+..
T Consensus 46 ~DVkGKiVvvl~~~P~~~~~~~~~f~~~~~~~~~~~~~K~~~A~~~GA~gvi~v~~ 101 (157)
T cd04821 46 LDVKGKTVVILVNDPGFATPDSGLFNGKAMTYYGRWTYKYEEAARQGAAGALIVHE 101 (157)
T ss_pred CCcCCcEEEEEcCCCCcccccccccCcccccccccHHHHHHHHHHCCCeEEEEEeC
Confidence 489999998884332 112 23445677888999998877644
No 251
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=21.44 E-value=1.2e+02 Score=22.17 Aligned_cols=47 Identities=15% Similarity=0.159 Sum_probs=32.4
Q ss_pred hhHHHhhCCCCcEEEEecCCcH------HHHHHHHHHcCCcceeeeeEeeeCC
Q 023987 5 REIKAKKSQKKQVHLFYCVECE------ELARKVAAQSDLITLQSINWRNFAD 51 (274)
Q Consensus 5 ~~~~~~~~~~~~~~i~~~~~~~------~la~~ia~~lg~~~~~~~~~~~F~d 51 (274)
||.-+.++..-.+.+|.+++++ .+.+++++..+++++..+....+++
T Consensus 4 ~~~~~~l~~pv~i~~F~~~~C~~C~~~~~~~~~l~~~~~~i~~~~vd~~~~~e 56 (89)
T cd03026 4 LEQIRRLNGPINFETYVSLSCHNCPDVVQALNLMAVLNPNIEHEMIDGALFQD 56 (89)
T ss_pred HHHHHhcCCCEEEEEEECCCCCCcHHHHHHHHHHHHHCCCceEEEEEhHhCHH
Confidence 4444467777788899987654 5667777766457777777777775
No 252
>COG0540 PyrB Aspartate carbamoyltransferase, catalytic chain [Nucleotide transport and metabolism]
Probab=21.15 E-value=1.8e+02 Score=27.05 Aligned_cols=39 Identities=15% Similarity=0.055 Sum_probs=34.0
Q ss_pred eCCCCCCeEEEEeccccchHHHHHHHHHHHhCCCcEEEEEE
Q 023987 225 EGNPAGCHVVIVDDLVQSGGTLIECQVLSYLLPAVLLKMCV 265 (274)
Q Consensus 225 ~~~v~gk~vlIVDDIi~TG~Tl~~aa~~Lk~~GA~~V~~~~ 265 (274)
.|.++|.+|.||=|+- -|.|...-++.|+..| .+|+.++
T Consensus 153 ~G~~~gl~iaivGDlk-hsRva~S~~~~L~~~g-a~v~lvs 191 (316)
T COG0540 153 FGRLDGLKIAIVGDLK-HSRVAHSNIQALKRFG-AEVYLVS 191 (316)
T ss_pred hCCcCCcEEEEEcccc-chHHHHHHHHHHHHcC-CEEEEEC
Confidence 5789999999999986 8999999999999999 5566654
No 253
>COG0794 GutQ Predicted sugar phosphate isomerase involved in capsule formation [Cell envelope biogenesis, outer membrane]
Probab=21.07 E-value=5.2e+02 Score=22.39 Aligned_cols=79 Identities=18% Similarity=0.010 Sum_probs=49.6
Q ss_pred CCcEEEEecCCcHHHHHHHHHHcCCcceeeeeEeeeCCCcceEEEeecCCCCCCeEEEEEecCCchhHHHHHHHHHhccc
Q 023987 14 KKQVHLFYCVECEELARKVAAQSDLITLQSINWRNFADGWPNLYINSAHDIRGQHVAFLASFSSPGVIFEQISVIYALPR 93 (274)
Q Consensus 14 ~~~~~i~~~~~~~~la~~ia~~lg~~~~~~~~~~~F~dGE~~~~v~~~~~v~g~~V~iiqs~~~~~~l~elll~~~a~r~ 93 (274)
...+.+...-.|-..++++|..|- .++.....--|.- . ..-. ...+...||+|.=|.+ .+--|++.++..||+
T Consensus 39 ~gkv~V~G~GkSG~Igkk~Aa~L~--s~G~~a~fv~p~e-a-~hgd-lg~i~~~DvviaiS~S--GeT~el~~~~~~aK~ 111 (202)
T COG0794 39 KGKVFVTGVGKSGLIGKKFAARLA--STGTPAFFVGPAE-A-LHGD-LGMITPGDVVIAISGS--GETKELLNLAPKAKR 111 (202)
T ss_pred CCcEEEEcCChhHHHHHHHHHHHH--ccCCceEEecCch-h-ccCC-ccCCCCCCEEEEEeCC--CcHHHHHHHHHHHHH
Confidence 456766665668899999998883 3433333322321 1 1111 2356668999887764 356677888999999
Q ss_pred cCCceE
Q 023987 94 LFVASF 99 (274)
Q Consensus 94 ~~a~~i 99 (274)
.|++-|
T Consensus 112 ~g~~li 117 (202)
T COG0794 112 LGAKLI 117 (202)
T ss_pred cCCcEE
Confidence 887543
No 254
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=20.94 E-value=4.4e+02 Score=22.43 Aligned_cols=120 Identities=15% Similarity=0.080 Sum_probs=61.2
Q ss_pred HHHHHHHHhcCCCCCCCCCEEEEEeCCchhh-hcccCCCCcccccchHHHHHHHHhcCCCCCCeEEEecCCChHHHHHHh
Q 023987 123 AFTMARILSNIPTSRGGPTSLVIYDIHALQE-RFYFSDHVLPLFETGIPLLKQRLHQLPDANNIVIAFPDDGAWKRFHKM 201 (274)
Q Consensus 123 a~~~a~ll~~~~~~~~g~d~ii~vdlH~~~~-~~ff~~~~~~l~~~~~~~la~~l~~~~~~~~~viV~pd~G~~~ra~~~ 201 (274)
.-.+|+.+++ .|+|.+..+|+..... .+. | ..+.+.+.+. .+-++.++-.......+..+
T Consensus 31 p~~~a~~~~~-----~g~d~l~v~dl~~~~~~~~~-~-----------~~~i~~i~~~--~~~pv~~~GgI~~~e~~~~~ 91 (234)
T cd04732 31 PVEVAKKWEE-----AGAKWLHVVDLDGAKGGEPV-N-----------LELIEEIVKA--VGIPVQVGGGIRSLEDIERL 91 (234)
T ss_pred HHHHHHHHHH-----cCCCEEEEECCCccccCCCC-C-----------HHHHHHHHHh--cCCCEEEeCCcCCHHHHHHH
Confidence 3368888875 5999999999876311 111 1 1334444443 23456665544455556555
Q ss_pred hc-CCCeEEEEEEEe-------------CCceEEEeeeCCCCCCeEEEEecc-ccchHHHHHHHHHHHhCCCcEEEEE
Q 023987 202 LD-HFPTVVCAKVRE-------------GDKRIVRIKEGNPAGCHVVIVDDL-VQSGGTLIECQVLSYLLPAVLLKMC 264 (274)
Q Consensus 202 a~-~~~~~~~~k~R~-------------~~~~i~~~~~~~v~gk~vlIVDDI-i~TG~Tl~~aa~~Lk~~GA~~V~~~ 264 (274)
.. +.+...+...-. ....+. ..-|+++..++ .+.. -.++.+..+.++.+.+.|+..+.+.
T Consensus 92 ~~~Gad~vvigs~~l~dp~~~~~i~~~~g~~~i~--~sid~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ga~~iii~ 166 (234)
T cd04732 92 LDLGVSRVIIGTAAVKNPELVKELLKEYGGERIV--VGLDAKDGKVA-TKGWLETSEVSLEELAKRFEELGVKAIIYT 166 (234)
T ss_pred HHcCCCEEEECchHHhChHHHHHHHHHcCCceEE--EEEEeeCCEEE-ECCCeeecCCCHHHHHHHHHHcCCCEEEEE
Confidence 43 544433211100 000111 11223332222 2211 1245677788999999999977553
No 255
>cd02792 MopB_CT_Formate-Dh-Na-like Formate dehydrogenase N, alpha subunit (Formate-Dh-Na) is a major component of nitrate respiration in bacteria such as in the E. coli formate dehydrogenase N (Fdh-N). Fdh-N is a membrane protein that is a complex of three different subunits and is the major electron donor to the nitrate respiratory chain. Also included in this CD is the Desulfovibrio gigas tungsten formate dehydrogenase, DgW-FDH. In contrast to Fdh-N, which is a functional heterotrimer, DgW-FDH is a heterodimer. The DgW-FDH complex is composed of a large subunit carrying the W active site and one [4Fe-4S] center, and a small subunit that harbors a series of three [4Fe-4S] clusters as well as a putative vacant binding site for a fourth cluster. The smaller subunit is not included in this alignment. This CD (MopB_CT_Formate-Dh-Na-like) is of the conserved molybdopterin_binding C-terminal (MopB_CT) region present in many, but not all, MopB homologs.
Probab=20.75 E-value=2e+02 Score=21.70 Aligned_cols=41 Identities=15% Similarity=0.212 Sum_probs=26.5
Q ss_pred HHHHHcCCcceeeeeEeeeCCCcceEEEeecCCCCCCeEEEE
Q 023987 31 KVAAQSDLITLQSINWRNFADGWPNLYINSAHDIRGQHVAFL 72 (274)
Q Consensus 31 ~ia~~lg~~~~~~~~~~~F~dGE~~~~v~~~~~v~g~~V~ii 72 (274)
.-|+.|| +.-++...-.=+.|+..+++.+.+.++...|++-
T Consensus 42 ~dA~~lg-i~~Gd~V~v~s~~G~~~~~v~v~~~i~~g~v~~~ 82 (122)
T cd02792 42 ELAAERG-IKNGDMVWVSSPRGKIKVKALVTDRVKPHEVGIP 82 (122)
T ss_pred HHHHHcC-CCCCCEEEEEcCCceEEEEEEECCCcCCCEEEEe
Confidence 3477886 7666554444567887778888777874444443
No 256
>PRK09271 flavodoxin; Provisional
Probab=20.73 E-value=4.6e+02 Score=21.16 Aligned_cols=46 Identities=13% Similarity=0.192 Sum_probs=27.1
Q ss_pred cHHHHHHHHHHcCCcceeeeeEeeeCCCcceEEEeecCCCCCCeEEEEEe
Q 023987 25 CEELARKVAAQSDLITLQSINWRNFADGWPNLYINSAHDIRGQHVAFLAS 74 (274)
Q Consensus 25 ~~~la~~ia~~lg~~~~~~~~~~~F~dGE~~~~v~~~~~v~g~~V~iiqs 74 (274)
...+|+.|++.|. -.-..+.+...++.+. . .+..++...+++++.|
T Consensus 14 Te~~A~~ia~~l~-~~g~~v~~~~~~~~~~--~-~~~~~~~~~d~vilgt 59 (160)
T PRK09271 14 TREVAREIEERCE-EAGHEVDWVETDVQTL--A-EYPLDPEDYDLYLLGT 59 (160)
T ss_pred HHHHHHHHHHHHH-hCCCeeEEEecccccc--c-ccccCcccCCEEEEEC
Confidence 4689999999984 3333455555544421 0 1123444578888877
No 257
>cd01520 RHOD_YbbB Member of the Rhodanese Homology Domain superfamily. This CD includes several putative ATP /GTP binding proteins including E. coli YbbB.
Probab=20.66 E-value=1.7e+02 Score=22.59 Aligned_cols=31 Identities=13% Similarity=-0.065 Sum_probs=24.0
Q ss_pred CCCeEEEEeccccchHHHHHHHHHHHhCCCcEEE
Q 023987 229 AGCHVVIVDDLVQSGGTLIECQVLSYLLPAVLLK 262 (274)
Q Consensus 229 ~gk~vlIVDDIi~TG~Tl~~aa~~Lk~~GA~~V~ 262 (274)
++++|++.++ .+|.+-..++..|+..|-+ |+
T Consensus 85 ~~~~vvvyC~--~~G~rs~~a~~~L~~~G~~-v~ 115 (128)
T cd01520 85 RDPKLLIYCA--RGGMRSQSLAWLLESLGID-VP 115 (128)
T ss_pred CCCeEEEEeC--CCCccHHHHHHHHHHcCCc-ee
Confidence 5778999887 4566777788999999984 54
No 258
>PHA01634 hypothetical protein
Probab=20.50 E-value=88 Score=25.48 Aligned_cols=33 Identities=18% Similarity=0.036 Sum_probs=22.4
Q ss_pred CCCCCCeEEEEeccccchHHHHHHHHHHHhCCCcEEEEE
Q 023987 226 GNPAGCHVVIVDDLVQSGGTLIECQVLSYLLPAVLLKMC 264 (274)
Q Consensus 226 ~~v~gk~vlIVDDIi~TG~Tl~~aa~~Lk~~GA~~V~~~ 264 (274)
-+++||+|++| |+.+-..+=.+.-+||++|.++
T Consensus 25 idvk~KtV~dI------GA~iGdSaiYF~l~GAK~Vva~ 57 (156)
T PHA01634 25 LNVYQRTIQIV------GADCGSSALYFLLRGASFVVQY 57 (156)
T ss_pred eeecCCEEEEe------cCCccchhhHHhhcCccEEEEe
Confidence 47889998766 4444444445556799998765
No 259
>PRK04194 hypothetical protein; Provisional
Probab=20.31 E-value=1e+02 Score=29.51 Aligned_cols=30 Identities=20% Similarity=-0.062 Sum_probs=25.1
Q ss_pred EeccccchHHHHHHHHHHHhCCCcEEEEEEec
Q 023987 236 VDDLVQSGGTLIECQVLSYLLPAVLLKMCVSE 267 (274)
Q Consensus 236 VDDIi~TG~Tl~~aa~~Lk~~GA~~V~~~~tH 267 (274)
|||+ ||.-+-.+.+.|.++||..|+..-..
T Consensus 255 iDD~--t~E~lg~~~e~L~~~GAlDV~~tPi~ 284 (392)
T PRK04194 255 IDDL--SPEVLGYLFERLLEAGALDVFITPIT 284 (392)
T ss_pred CcCC--CHHHHHHHHHHHHHCCCceeeeccce
Confidence 5887 89999999999999999988664433
No 260
>COG0560 SerB Phosphoserine phosphatase [Amino acid transport and metabolism]
Probab=20.21 E-value=1.6e+02 Score=25.47 Aligned_cols=46 Identities=20% Similarity=0.107 Sum_probs=31.5
Q ss_pred hhHHHhhC-CCCcEEEEecCCcHHHHHHHHHHcCCcceeeeeEeeeCCC
Q 023987 5 REIKAKKS-QKKQVHLFYCVECEELARKVAAQSDLITLQSINWRNFADG 52 (274)
Q Consensus 5 ~~~~~~~~-~~~~~~i~~~~~~~~la~~ia~~lg~~~~~~~~~~~F~dG 52 (274)
+|+-+..+ ....+.|+||+-+ .+++.||+.|| +...-...-...||
T Consensus 83 ~elv~~lk~~G~~v~iiSgg~~-~lv~~ia~~lg-~d~~~an~l~~~dG 129 (212)
T COG0560 83 EELVAALKAAGAKVVIISGGFT-FLVEPIAERLG-IDYVVANELEIDDG 129 (212)
T ss_pred HHHHHHHHHCCCEEEEEcCChH-HHHHHHHHHhC-CchheeeEEEEeCC
Confidence 34333333 3577778876653 89999999997 87766666666666
No 261
>COG0359 RplI Ribosomal protein L9 [Translation, ribosomal structure and biogenesis]
Probab=20.09 E-value=1.7e+02 Score=24.09 Aligned_cols=48 Identities=17% Similarity=0.299 Sum_probs=36.3
Q ss_pred CcEEEEecCCcHHHHHHHHHHcCCcceeeeeEeeeCC-----CcceEEEeecCCCC
Q 023987 15 KQVHLFYCVECEELARKVAAQSDLITLQSINWRNFAD-----GWPNLYINSAHDIR 65 (274)
Q Consensus 15 ~~~~i~~~~~~~~la~~ia~~lg~~~~~~~~~~~F~d-----GE~~~~v~~~~~v~ 65 (274)
.+..+|..-++.+.|+.+... | +++.+-.+. +|+ |+.++.+.+.++|.
T Consensus 85 ~~GklfGSVt~~dIa~~l~~~-g-~~idk~~i~-l~~~ik~~G~~~V~vkLh~eV~ 137 (148)
T COG0359 85 EDGKLFGSVTSKDIAEALKAA-G-FKLDKRKIR-LPNGIKTLGEHEVEVKLHEEVT 137 (148)
T ss_pred CCCceeccccHHHHHHHHHHc-C-CCcchheeE-cCchhhhcceeEEEEEecCceE
Confidence 345678888899999999888 7 777665554 666 78888888877764
No 262
>TIGR00299 conserved hypothetical protein TIGR00299. Members of this family are found in the Archaea and in several different bacteria lineages. The function in unknown and the genomic context is not well conserved.
Probab=20.06 E-value=1.1e+02 Score=29.25 Aligned_cols=30 Identities=23% Similarity=-0.036 Sum_probs=25.3
Q ss_pred EeccccchHHHHHHHHHHHhCCCcEEEEEEec
Q 023987 236 VDDLVQSGGTLIECQVLSYLLPAVLLKMCVSE 267 (274)
Q Consensus 236 VDDIi~TG~Tl~~aa~~Lk~~GA~~V~~~~tH 267 (274)
|||+ ||.-+..+.+.|.++||..|+..-..
T Consensus 254 iDD~--t~E~lg~~~e~L~~~GAlDV~~tPi~ 283 (382)
T TIGR00299 254 VDDI--SGEALGYLLESLLEQGALDVFTIPIY 283 (382)
T ss_pred CcCC--CHHHHHHHHHHHHHCCCceeeeccce
Confidence 5887 89999999999999999988765443
Done!