Query 023988
Match_columns 274
No_of_seqs 181 out of 1516
Neff 8.7
Searched_HMMs 46136
Date Fri Mar 29 08:07:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023988.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023988hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK11029 FtsH protease regulat 100.0 1.6E-42 3.5E-47 306.8 26.8 236 17-259 5-321 (334)
2 TIGR01932 hflC HflC protein. H 100.0 4.6E-42 9.9E-47 304.7 27.4 236 17-259 5-311 (317)
3 KOG3090 Prohibitin-like protei 100.0 1E-41 2.2E-46 275.1 22.8 249 16-268 22-281 (290)
4 PRK10930 FtsH protease regulat 100.0 1.9E-39 4.1E-44 294.6 29.0 244 17-272 82-361 (419)
5 cd03401 Band_7_prohibitin Band 100.0 7.8E-40 1.7E-44 272.6 23.3 192 31-223 1-193 (196)
6 KOG3083 Prohibitin [Posttransl 100.0 3.9E-40 8.4E-45 265.7 17.7 259 7-267 2-271 (271)
7 cd03405 Band_7_HflC Band_7_Hfl 100.0 3.7E-38 8E-43 270.9 22.7 205 32-240 1-240 (242)
8 TIGR01933 hflK HflK protein. H 100.0 2.7E-37 5.8E-42 268.3 25.8 225 32-266 1-260 (261)
9 cd03407 Band_7_4 A subgroup of 100.0 1.9E-37 4.1E-42 269.0 23.7 217 37-260 1-253 (262)
10 cd03403 Band_7_stomatin_like B 100.0 2.2E-36 4.8E-41 255.4 24.0 210 35-256 1-214 (215)
11 cd03404 Band_7_HflK Band_7_Hfl 100.0 8.5E-36 1.8E-40 259.6 24.9 175 20-200 3-194 (266)
12 cd03406 Band_7_3 A subgroup of 100.0 3.5E-34 7.6E-39 247.9 22.0 170 28-199 1-175 (280)
13 KOG2621 Prohibitins and stomat 100.0 4E-34 8.6E-39 239.1 16.6 241 5-258 28-274 (288)
14 COG0330 HflC Membrane protease 100.0 7.3E-32 1.6E-36 237.8 26.7 235 19-261 8-281 (291)
15 cd03402 Band_7_2 A subgroup of 100.0 1.1E-31 2.3E-36 226.1 19.5 178 31-214 1-186 (219)
16 PF01145 Band_7: SPFH domain / 100.0 2.2E-31 4.7E-36 218.0 10.8 174 33-212 1-179 (179)
17 smart00244 PHB prohibitin homo 100.0 3.5E-29 7.5E-34 201.4 15.9 157 30-191 1-159 (160)
18 KOG2620 Prohibitins and stomat 99.9 4.6E-28 1E-32 200.5 7.5 163 30-196 5-171 (301)
19 KOG2962 Prohibitin-related mem 99.9 1.2E-22 2.7E-27 165.4 20.5 169 20-189 11-184 (322)
20 cd03400 Band_7_1 A subgroup of 99.9 1.6E-21 3.4E-26 150.6 13.0 121 71-191 2-123 (124)
21 cd03408 Band_7_5 A subgroup of 99.9 8.4E-21 1.8E-25 159.3 15.2 160 28-191 12-206 (207)
22 COG2268 Uncharacterized protei 99.8 9.2E-19 2E-23 161.1 19.8 166 31-196 33-219 (548)
23 cd03399 Band_7_flotillin Band_ 99.7 7.5E-18 1.6E-22 130.8 9.4 119 72-190 2-126 (128)
24 KOG2668 Flotillins [Intracellu 99.7 9.5E-16 2.1E-20 132.1 16.6 162 32-197 2-173 (428)
25 cd02106 Band_7 The band 7 doma 99.6 4.7E-15 1E-19 112.9 10.8 107 83-191 14-120 (121)
26 PF13421 Band_7_1: SPFH domain 99.5 2.7E-12 5.8E-17 107.5 16.0 161 29-191 13-206 (211)
27 COG4260 Membrane protease subu 98.8 2.5E-07 5.5E-12 78.5 14.1 161 29-190 38-232 (345)
28 PTZ00491 major vault protein; 97.8 0.0023 5.1E-08 62.8 18.7 156 33-189 465-650 (850)
29 PF12127 YdfA_immunity: SigmaW 97.4 0.0019 4.1E-08 55.2 10.7 107 85-200 134-247 (316)
30 PRK13665 hypothetical protein; 97.2 0.0039 8.5E-08 53.0 10.4 107 85-200 139-252 (316)
31 COG1580 FliL Flagellar basal b 96.3 0.2 4.3E-06 40.1 12.8 80 90-179 76-157 (159)
32 PRK06654 fliL flagellar basal 94.9 0.97 2.1E-05 36.8 12.2 77 91-179 101-177 (181)
33 PRK12785 fliL flagellar basal 94.7 1.4 3.1E-05 35.5 12.9 52 125-178 110-163 (166)
34 COG4864 Uncharacterized protei 93.6 0.54 1.2E-05 39.2 8.4 106 86-200 139-251 (328)
35 PF03748 FliL: Flagellar basal 91.5 3.7 8E-05 29.6 9.9 52 125-178 43-96 (99)
36 PF11978 MVP_shoulder: Shoulde 89.7 1.3 2.8E-05 33.3 5.8 95 85-180 11-116 (118)
37 PRK07718 fliL flagellar basal 88.3 5.4 0.00012 31.2 9.0 52 125-178 86-139 (142)
38 PRK05697 flagellar basal body- 86.1 12 0.00027 29.0 9.7 54 125-178 77-134 (137)
39 PRK07021 fliL flagellar basal 84.3 14 0.00031 29.5 9.7 54 125-178 102-159 (162)
40 PRK08455 fliL flagellar basal 83.2 12 0.00027 30.6 8.9 52 125-178 126-179 (182)
41 PRK05696 fliL flagellar basal 80.1 21 0.00046 28.7 9.3 54 125-178 110-167 (170)
42 cd03404 Band_7_HflK Band_7_Hfl 76.7 15 0.00033 31.6 8.1 38 203-241 227-265 (266)
43 KOG2668 Flotillins [Intracellu 68.9 36 0.00078 30.7 8.3 26 233-258 356-385 (428)
44 PRK04057 30S ribosomal protein 66.9 35 0.00077 28.4 7.6 81 85-176 102-184 (203)
45 PTZ00399 cysteinyl-tRNA-synthe 64.3 76 0.0017 31.5 10.6 46 155-200 519-569 (651)
46 TIGR01933 hflK HflK protein. H 58.8 40 0.00086 29.0 6.9 48 154-202 115-165 (261)
47 PRK11029 FtsH protease regulat 56.6 60 0.0013 29.3 7.8 50 172-221 202-253 (334)
48 TIGR01932 hflC HflC protein. H 54.2 58 0.0013 29.0 7.3 81 168-250 188-282 (317)
49 COG2268 Uncharacterized protei 53.9 91 0.002 30.1 8.7 57 203-259 428-493 (548)
50 PRK10081 entericidin B membran 49.7 19 0.00042 22.5 2.4 22 10-31 1-22 (48)
51 PF07172 GRP: Glycine rich pro 49.5 12 0.00026 27.1 1.8 20 12-31 2-21 (95)
52 cd03405 Band_7_HflC Band_7_Hfl 48.1 38 0.00082 28.6 5.0 64 154-218 120-185 (242)
53 cd03407 Band_7_4 A subgroup of 44.7 43 0.00093 28.9 4.8 44 171-214 127-172 (262)
54 PF08400 phage_tail_N: Prophag 41.2 66 0.0014 24.9 4.8 36 176-211 94-130 (134)
55 PF01015 Ribosomal_S3Ae: Ribos 40.7 75 0.0016 26.3 5.4 67 85-162 108-176 (194)
56 PF10717 ODV-E18: Occlusion-de 38.2 43 0.00094 23.5 3.0 14 10-23 27-40 (85)
57 COG5510 Predicted small secret 34.0 44 0.00095 20.4 2.2 22 10-31 1-22 (44)
58 PRK12613 galactose-6-phosphate 33.2 34 0.00074 26.8 2.1 37 152-189 11-47 (141)
59 cd03401 Band_7_prohibitin Band 32.9 67 0.0014 26.0 4.0 10 204-213 185-194 (196)
60 PF09796 QCR10: Ubiquinol-cyto 32.0 93 0.002 20.8 3.7 35 2-36 4-39 (64)
61 COG1890 RPS1A Ribosomal protei 28.1 3.6E+02 0.0078 22.6 7.7 82 84-176 109-192 (214)
62 PRK06568 F0F1 ATP synthase sub 27.2 3E+02 0.0065 21.8 6.6 9 140-148 28-36 (154)
63 PRK03427 cell division protein 27.0 37 0.0008 30.5 1.5 30 10-39 1-32 (333)
64 KOG2007 Cysteinyl-tRNA synthet 26.1 3.1E+02 0.0066 26.4 7.3 9 164-172 505-513 (586)
65 PF11820 DUF3339: Protein of u 25.4 1.1E+02 0.0024 20.6 3.2 34 11-44 1-34 (68)
66 TIGR01120 rpiB ribose 5-phosph 24.9 61 0.0013 25.4 2.2 24 152-175 10-33 (143)
67 PF03780 Asp23: Asp23 family; 24.1 1.3E+02 0.0029 21.6 3.9 15 88-102 57-71 (108)
68 PF09432 THP2: Tho complex sub 23.9 3.4E+02 0.0074 20.8 10.7 34 157-190 13-46 (132)
69 PHA03029 hypothetical protein; 23.7 1.2E+02 0.0026 20.8 3.2 30 9-38 54-83 (92)
70 PF08802 CytB6-F_Fe-S: Cytochr 23.3 49 0.0011 19.8 1.1 29 8-36 9-37 (39)
71 PF11471 Sugarporin_N: Maltopo 22.2 2.4E+02 0.0052 18.5 4.4 18 203-220 39-56 (60)
72 cd03406 Band_7_3 A subgroup of 21.7 5.5E+02 0.012 22.5 10.5 91 104-202 75-174 (280)
73 PLN03086 PRLI-interacting fact 21.7 1.3E+02 0.0028 29.3 4.1 22 247-268 89-121 (567)
74 TIGR00689 rpiB_lacA_lacB sugar 21.5 74 0.0016 25.0 2.1 23 153-175 10-32 (144)
75 PF08139 LPAM_1: Prokaryotic m 20.7 1.5E+02 0.0032 15.8 2.5 14 8-21 4-17 (25)
76 PF14991 MLANA: Protein melan- 20.4 34 0.00073 25.6 0.0 25 19-43 32-57 (118)
77 PRK00753 psbL photosystem II r 20.1 1.1E+02 0.0023 18.0 2.0 19 15-33 19-37 (39)
No 1
>PRK11029 FtsH protease regulator HflC; Provisional
Probab=100.00 E-value=1.6e-42 Score=306.78 Aligned_cols=236 Identities=21% Similarity=0.279 Sum_probs=200.6
Q ss_pred HHHHHHHHHHHhhccEEEecCCeEEEEEecccceeec------eecCeeEEeccccceeEEEEeeeeeeeeeec-ccCCC
Q 023988 17 AAFGLGAAATVLNSSLYTVDGGERAVLFDRFRGVIDE------TIGEGTHFLIPWLQKPFIFDIRTRPHTFSSV-SGTKD 89 (274)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~V~~ge~gVv~~~~G~~~~~------~~~pG~~~~~P~~~~v~~~~~~~~~~~~~~~-~~tkd 89 (274)
++++++++++++++|+++|++||+||++ +||++.+. +++||+||++||++++.++|+|.+.++.+.+ +.|+|
T Consensus 5 ~~~~~~~~~~~l~~s~~iV~ege~gVV~-rFGk~~~~~~~~~~~l~PGLhf~iPfid~V~~vdvR~q~~d~~~~~vlT~D 83 (334)
T PRK11029 5 VIAIIIIVLVVLYMSVFVVKEGERGIVL-RFGKVLRDDDNKPLVYAPGLHFKIPFIETVKMLDARIQTMDNQADRFVTKE 83 (334)
T ss_pred HHHHHHHHHHHHHheEEEECCCeEEEEE-ECCceeccccccccccCCceEEEcCCceEEEEEeeEEEEeeCCCceEEcCC
Confidence 3334555667778999999999999996 99998653 4899999999999999999999999998854 89999
Q ss_pred cceEEEEEEEEEeecCCCHhHHHHHhc-cc--cccccccchHHHHHHHHhhcCChhHHhh-chHHHHHHHHHHHHHH---
Q 023988 90 LQMVNLTLRVLSRPEVSRLPYIFQHLG-LE--YDEKVLPSIGNEVLKAVVAQFNADQLLT-ERPHVSALVRESLIKR--- 162 (274)
Q Consensus 90 ~~~v~v~~~v~y~v~~~~~~~~~~~~g-~~--~~~~~i~~~~~~~lr~~~~~~~~~ei~~-~R~~i~~~i~~~l~~~--- 162 (274)
+..|.+|++++|++. |+..+|..++ .+ .....|.+.+++++|+++|+++++++++ +|++|..++++.+++.
T Consensus 84 ~~~V~VD~~V~yrI~--Dp~~~~~~~~~~n~~~a~~~l~~~v~salR~viG~~tldei~~~~R~~i~~~v~~~l~~~~~~ 161 (334)
T PRK11029 84 KKDLIVDSYIKWRIS--DFSRYYLATGGGDISQAEVLLKRKFSDRLRSEIGRLDVKDIVTDSRGRLTLDVRDALNSGSAG 161 (334)
T ss_pred CCEEEEEEEEEEEEC--CHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHcccCHHHHHHhhHHHHHHHHHHHHHHhhhc
Confidence 999999999999994 6777777654 22 2457788999999999999999999997 7999999999999954
Q ss_pred ------------------------------------hhcCCeEEEEEEEeeccCCHHHHHHHHHHHHHHHHHHH------
Q 023988 163 ------------------------------------ARDFNIVLDDVAITHLSYGAEFSRAVEQKQVAQQEAER------ 200 (274)
Q Consensus 163 ------------------------------------l~~~Gi~v~~v~I~~i~~p~~~~~ai~~k~~A~qeae~------ 200 (274)
+.+|||+|.+|.|++++||+++.+++++++.|++++++
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GI~V~~V~i~~i~~P~~v~~ai~~~~~Aere~~a~~~~ae 241 (334)
T PRK11029 162 TEDEVATPAADDAIASAAERVEAETKGKVPVINPNSMAALGIEVVDVRIKQINLPTEVSDAIYNRMRAEREAVARRHRSQ 241 (334)
T ss_pred ccccccccccccccccchhhcccccccccccccccccccCCcEEEEEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46899999999999999999999999999999997542
Q ss_pred ------------------------hHHHHHHHHHHHHHHHHHHHHhhhcCcchhHH-HHHHHHHHHHHHhcCCCCEEEec
Q 023988 201 ------------------------SKFVVMKADQERRAAQLISEATSKFGLGLIEL-RRIEASREIAATLARSPHVAYLP 255 (274)
Q Consensus 201 ------------------------a~~~~~~A~~ea~aa~~~~~a~~~~~~~~~~~-~~lea~~~ia~~~~~~~~~i~l~ 255 (274)
++..+.+|++||+++++++++++++ |+++++ ++||++++.. +++++++++|
T Consensus 242 ge~~a~~~~a~A~~e~~~~~AeA~~~a~i~~aegeA~a~~~~~~a~~~~-p~~~~~~~~lea~~~~~---~~~~~~~vl~ 317 (334)
T PRK11029 242 GQEEAEKLRATADYEVTRTLAEAERQGRIMRGEGDAEAAKLFADAFSQD-PDFYAFIRSLRAYENSF---SGNQDVMVLS 317 (334)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC-HHHHHHHHHHHHHHHHh---cCCCcEEEEC
Confidence 1124667788888899999999887 999998 9999999953 3444689999
Q ss_pred CCCC
Q 023988 256 GGKN 259 (274)
Q Consensus 256 ~~~~ 259 (274)
++++
T Consensus 318 ~~~~ 321 (334)
T PRK11029 318 PDSD 321 (334)
T ss_pred CChH
Confidence 9983
No 2
>TIGR01932 hflC HflC protein. HflK and HflC are paralogs encoded by tandem genes in Proteobacteria, spirochetes, and some other bacterial lineages. The HflKC complex is anchored in the membrane and exposed to the periplasm. The complex is not active as a protease, but rather binds to and appears to modulate the ATP-dependent protease FtsH. The overall function of HflKC is not fully described.//Regulation of FtsH protease appears to be negative (PubMed:8947034, PubMed:96367)
Probab=100.00 E-value=4.6e-42 Score=304.73 Aligned_cols=236 Identities=17% Similarity=0.267 Sum_probs=199.1
Q ss_pred HHHHHHHHHHHhhccEEEecCCeEEEEEecccceeec------eecCeeEEeccccceeEEEEeeeeeeeeee-cccCCC
Q 023988 17 AAFGLGAAATVLNSSLYTVDGGERAVLFDRFRGVIDE------TIGEGTHFLIPWLQKPFIFDIRTRPHTFSS-VSGTKD 89 (274)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~V~~ge~gVv~~~~G~~~~~------~~~pG~~~~~P~~~~v~~~~~~~~~~~~~~-~~~tkd 89 (274)
++++++++++++++|+++|++||+||++ +||++.+. +++||+||++||++++.++|++.++++.+. .+.|+|
T Consensus 5 ~~~~~~~~~~~l~~~~~iV~~ge~gVv~-~fGk~~~~~~~~~~v~~pGlhf~~P~i~~v~~vd~r~q~~~~~~~~vlTkD 83 (317)
T TIGR01932 5 GIVVIVLLIVVLFQPFFIIKEGERGIIT-RFGKILKDNNHHVLVYEPGLHFKIPFIEHVKIFDAKIQTMDGRPDRIPTKE 83 (317)
T ss_pred HHHHHHHHHHHHHheEEEECCCeEEEEE-ecCceeccccccccccCCCeEEEeccccEEEEeeeeEEEecCCcceeECCC
Confidence 3334445577788999999999999995 99998643 348999999999999999999999999765 589999
Q ss_pred cceEEEEEEEEEeecCCCHhHHHHHhcc---ccccccccchHHHHHHHHhhcCChhHHhh-chHHH--------------
Q 023988 90 LQMVNLTLRVLSRPEVSRLPYIFQHLGL---EYDEKVLPSIGNEVLKAVVAQFNADQLLT-ERPHV-------------- 151 (274)
Q Consensus 90 ~~~v~v~~~v~y~v~~~~~~~~~~~~g~---~~~~~~i~~~~~~~lr~~~~~~~~~ei~~-~R~~i-------------- 151 (274)
++++.++++++||+. ++..+|.++|. ++.+..|.+.+++++|+++|+|+++|+++ +|+++
T Consensus 84 ~~~V~Vd~~V~yrV~--d~~~~~~~~~~~~~~~~~~~l~~~~~~~lR~vig~~tl~eil~~~r~~i~~~~~~~~~~~~~~ 161 (317)
T TIGR01932 84 KKDIIIDTYIRWRIE--DFKKYYLSTGGGTISAAEVLIKRKIDDRLRSEIGVLGLKEIVRSSNDQLDTLVSKLALNRGGK 161 (317)
T ss_pred CCEEEEEEEEEEEEC--CHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHccCcHHHHHhcchHHhhhhhchhhcccccc
Confidence 999999999999995 78888888772 34677899999999999999999999997 46655
Q ss_pred ---------------HHHHHHHHHHHhhcCCeEEEEEEEeeccCCHHHHHHHHHHHHHHHHHHH----------------
Q 023988 152 ---------------SALVRESLIKRARDFNIVLDDVAITHLSYGAEFSRAVEQKQVAQQEAER---------------- 200 (274)
Q Consensus 152 ---------------~~~i~~~l~~~l~~~Gi~v~~v~I~~i~~p~~~~~ai~~k~~A~qeae~---------------- 200 (274)
.+.+.+.+...+.+||++|++|.|+++++|+++.+++++++.|++++++
T Consensus 162 ~~~~~~~~~~~r~~l~~~i~~~~~~~~~~~Gi~V~~V~I~~i~~p~~v~~Ai~~~~~aere~~a~~~r~ege~~a~~i~a 241 (317)
T TIGR01932 162 INKIAMTITKGREILAREISQIANSQLKDIGIEVVDVRIKKINYSDELSESIYNRMRSEREQIARMHRSQGEEKAEEILG 241 (317)
T ss_pred ccccccccchhhhhHHHHHHHHHHHHHhcCCcEEEEEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5678888888999999999999999999999999999998888875311
Q ss_pred --------------hHHHHHHHHHHHHHHHHHHHHhhhcCcchhHH-HHHHHHHHHHHHhcCCCCEEEecCCCC
Q 023988 201 --------------SKFVVMKADQERRAAQLISEATSKFGLGLIEL-RRIEASREIAATLARSPHVAYLPGGKN 259 (274)
Q Consensus 201 --------------a~~~~~~A~~ea~aa~~~~~a~~~~~~~~~~~-~~lea~~~ia~~~~~~~~~i~l~~~~~ 259 (274)
++..+.+|++||+++++++++++++ |+++++ ++||+++++. ++.++++++|+++.
T Consensus 242 ~A~~e~~~~~aeA~a~a~~~~Aegea~a~~~~~~a~~~~-p~~~~~~~~le~~~~~~---~~~~~~~vl~~~~~ 311 (317)
T TIGR01932 242 KAEYEVRKILSEAYRTARIIKGEGDAEAAKIYSDAYGKD-PEFYSFWRSLEAYEKSF---KDNQDEKVLSTDSE 311 (317)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHccC-HHHHHHHHHHHHHHHHh---CCCCCEEEECCCcH
Confidence 1235677888888899999999987 999997 9999999953 34556899999883
No 3
>KOG3090 consensus Prohibitin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1e-41 Score=275.11 Aligned_cols=249 Identities=54% Similarity=0.849 Sum_probs=231.3
Q ss_pred HHHHHHHHHHHHhhccEEEecCCeEEEEEecccceeeceecCeeEEeccccceeEEEEeeeeeeeeeecccCCCcceEEE
Q 023988 16 RAAFGLGAAATVLNSSLYTVDGGERAVLFDRFRGVIDETIGEGTHFLIPWLQKPFIFDIRTRPHTFSSVSGTKDLQMVNL 95 (274)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~V~~ge~gVv~~~~G~~~~~~~~pG~~~~~P~~~~v~~~~~~~~~~~~~~~~~tkd~~~v~v 95 (274)
.+++++.+++.....|+|.|+.||++++|+|+||+.+.++..|.||.+|||++-+.||+|-+.+.+.+.+.|+|-+.|++
T Consensus 22 ~~~~~~G~~~y~v~~sl~nVdgGHRAI~fnRi~Gik~~iy~EGtHf~iPwfe~pIiYDvRarP~~i~S~tGskDLQmVnI 101 (290)
T KOG3090|consen 22 KLLLIGGLGAYGVTQSLYNVDGGHRAIVFNRIGGIKDDIYPEGTHFRIPWFERPIIYDVRARPRLISSPTGSKDLQMVNI 101 (290)
T ss_pred HHHHHhchhhheecceeEeecCCceEEEEeccccchhccccCCceEeeeccccceeeeeccCcccccCCCCCcceeEEEe
Confidence 34445556677788999999999999999999999989999999999999999999999999999999999999999999
Q ss_pred EEEEEEeecCCCHhHHHHHhccccccccccchHHHHHHHHhhcCChhHHhhchHHHHHHHHHHHHHHhhcCCeEEEEEEE
Q 023988 96 TLRVLSRPEVSRLPYIFQHLGLEYDEKVLPSIGNEVLKAVVAQFNADQLLTERPHVSALVRESLIKRARDFNIVLDDVAI 175 (274)
Q Consensus 96 ~~~v~y~v~~~~~~~~~~~~g~~~~~~~i~~~~~~~lr~~~~~~~~~ei~~~R~~i~~~i~~~l~~~l~~~Gi~v~~v~I 175 (274)
...+.-|++.+.++.+|+++|.||.++.+..++.+.++.++++|+..+++++|+..+..|++.|-++..++.|.++||.|
T Consensus 102 ~lRVLsRP~~~~Lp~iyrtLG~~y~ERVLPSIinEvLKaVVAqfNASqLITQRe~VSrliRk~L~eRA~~Fni~LDDVSi 181 (290)
T KOG3090|consen 102 GLRVLSRPMADQLPEIYRTLGQNYDERVLPSIINEVLKAVVAQFNASQLITQREQVSRLIRKILTERAADFNIALDDVSI 181 (290)
T ss_pred eeEEecCCChhhhHHHHHHhccCcchhhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhccceEeeccee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeccCCHHHHHHHHHHHHHHHHHHHhHHH-----------HHHHHHHHHHHHHHHHHhhhcCcchhHHHHHHHHHHHHHH
Q 023988 176 THLSYGAEFSRAVEQKQVAQQEAERSKFV-----------VMKADQERRAAQLISEATSKFGLGLIELRRIEASREIAAT 244 (274)
Q Consensus 176 ~~i~~p~~~~~ai~~k~~A~qeae~a~~~-----------~~~A~~ea~aa~~~~~a~~~~~~~~~~~~~lea~~~ia~~ 244 (274)
+++.|.+++..+++.||.|+|||+||++. +.+|++||++++.+.+|.+++ |.|+.+|.+|+-++||+.
T Consensus 182 T~l~F~~efTaAiEaKQvA~QeAqRA~F~VekA~qek~~~ivrAqGEaksAqliGeAi~nn-~~fi~Lrki~aAr~IA~t 260 (290)
T KOG3090|consen 182 TELTFGKEFTAAIEAKQVAAQEAQRAKFIVEKAEQEKQSAIVRAQGEAKSAQLIGEAIKNN-PAFITLRKIEAAREIAQT 260 (290)
T ss_pred eeeecCHHHHHHHHHHHHHHHHHhhhhhhhHHHHHhhhhhhhhhccchHHHHHHHHHHhCC-ccceeehhHHHHHHHHHH
Confidence 99999999999999999999999997654 556677788899999999987 999999999999999999
Q ss_pred hcCCCCEEEecCCCCCcceeccCc
Q 023988 245 LARSPHVAYLPGGKNSNMLLALNP 268 (274)
Q Consensus 245 ~~~~~~~i~l~~~~~~~~~~~~~~ 268 (274)
+++|+|.++++++. ++||+.+
T Consensus 261 ia~S~NkvyL~~~~---LlLn~q~ 281 (290)
T KOG3090|consen 261 IASSANKVYLSSDD---LLLNLQD 281 (290)
T ss_pred HhcCCCeEEecccc---eeeeehh
Confidence 99999999999876 6666644
No 4
>PRK10930 FtsH protease regulator HflK; Provisional
Probab=100.00 E-value=1.9e-39 Score=294.58 Aligned_cols=244 Identities=18% Similarity=0.235 Sum_probs=196.3
Q ss_pred HHHHHHHHHHHhhccEEEecCCeEEEEEecccceeeceecCeeEEeccccceeEEEEeeeeeeee-eecccCCCcceEEE
Q 023988 17 AAFGLGAAATVLNSSLYTVDGGERAVLFDRFRGVIDETIGEGTHFLIPWLQKPFIFDIRTRPHTF-SSVSGTKDLQMVNL 95 (274)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~V~~ge~gVv~~~~G~~~~~~~~pG~~~~~P~~~~v~~~~~~~~~~~~-~~~~~tkd~~~v~v 95 (274)
++++++++++|+++|+++|+++|+||++ +||++. .+++||+||++||+++|..+|++.+.... +..++|+|+..|++
T Consensus 82 ~ii~~~~v~i~l~sg~yiV~e~E~gVV~-rFGk~~-~~l~PGLhfk~PfId~V~~vdv~~~~~~~~~~~mLT~D~n~V~V 159 (419)
T PRK10930 82 GIAAAAVVIIWAASGFYTIKEAERGVVT-RFGKFS-HLVEPGLNWKPTFIDEVKPVNVEAVRELAASGVMLTSDENVVRV 159 (419)
T ss_pred HHHHHHHHHHHHHheEEEECCCeEEEEE-ECCcCc-ceeCCceEEecCceEEEEEEEeEEEEEccCcceeECCCCCEEEE
Confidence 3344555667888999999999999995 999986 58999999999999999999998765332 34589999999999
Q ss_pred EEEEEEeecCCCHhHHHHHhccccccccccchHHHHHHHHhhcCChhHHhh-chHHHHHHHHHHHHHHhhcC--CeEEEE
Q 023988 96 TLRVLSRPEVSRLPYIFQHLGLEYDEKVLPSIGNEVLKAVVAQFNADQLLT-ERPHVSALVRESLIKRARDF--NIVLDD 172 (274)
Q Consensus 96 ~~~v~y~v~~~~~~~~~~~~g~~~~~~~i~~~~~~~lr~~~~~~~~~ei~~-~R~~i~~~i~~~l~~~l~~~--Gi~v~~ 172 (274)
+++++|||. |+..++.+ ..+++..|.+.+++++|+++++++++++++ +|++|.+++++.+++.++.| ||+|.+
T Consensus 160 d~~VqYrI~--Dp~~~lf~--v~~~~~~L~~~~~SAlR~vIG~~tldevLt~~R~~I~~~i~~~l~e~l~~y~~GI~V~~ 235 (419)
T PRK10930 160 EMNVQYRVT--DPEKYLFS--VTSPDDSLRQATDSALRGVIGKYTMDRILTEGRTVIRSDTQRELEETIRPYDMGITLLD 235 (419)
T ss_pred EEEEEEEEC--CHHHHHHh--ccCHHHHHHHHHHHHHHHHHccCCHHHHhhccHHHHHHHHHHHHHHHHhhcCCCeEEEE
Confidence 999999995 56555544 456778899999999999999999999998 69999999999999999987 999999
Q ss_pred EEEeeccCCHHHHHHHHHHHHHHHHHHHh------------------------------HHHHHHHHHHHHH-HHHHHHH
Q 023988 173 VAITHLSYGAEFSRAVEQKQVAQQEAERS------------------------------KFVVMKADQERRA-AQLISEA 221 (274)
Q Consensus 173 v~I~~i~~p~~~~~ai~~k~~A~qeae~a------------------------------~~~~~~A~~ea~a-a~~~~~a 221 (274)
|.|++++||+++.+++++.+.|+++.++. +..+.+|++||++ +++++ +
T Consensus 236 V~I~di~pP~eV~~Af~~v~~Are~~~~~i~eAeayan~iip~A~gea~~ii~~AeAyr~~~i~~AeGda~rF~~i~~-~ 314 (419)
T PRK10930 236 VNFQAARPPEEVKAAFDDAIAARENEQQYIREAEAYTNEVQPRANGQAQRILEEARAYKAQTILEAQGEVARFAKLLP-E 314 (419)
T ss_pred EEEeecCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH-H
Confidence 99999999999999999988888764330 1224445555544 33443 6
Q ss_pred hhhcCcchhHH-HHHHHHHHHHHHhcCCCCEEEecCCCCCcceeccCcccCC
Q 023988 222 TSKFGLGLIEL-RRIEASREIAATLARSPHVAYLPGGKNSNMLLALNPALTG 272 (274)
Q Consensus 222 ~~~~~~~~~~~-~~lea~~~ia~~~~~~~~~i~l~~~~~~~~~~~~~~~~~~ 272 (274)
|.++ |++++. .|||+++++ ++ +.++++++.+++..++|+|.+.+.+
T Consensus 315 Y~ka-P~vtr~RlYletme~v---l~-~~~kvivd~~~~~~~~lpl~~~~~~ 361 (419)
T PRK10930 315 YKAA-PEITRERLYIETMEKV---LG-HTRKVLVNDKGGNLMVLPLDQMLKG 361 (419)
T ss_pred HhhC-HHHHHHHHHHHHHHHH---Hc-cCCEEEEeCCCCeeEEeechHhhhc
Confidence 7776 999997 999999996 43 4455677766444678888875443
No 5
>cd03401 Band_7_prohibitin Band_7_prohibitin. A subgroup of the band 7 domain of flotillin (reggie) like proteins. This subgroup group includes proteins similar to prohibitin (a lipid raft-associated integral membrane protein). Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. These microdomains in addition to being stable scaffolds may also be also dynamic units with their own regulatory functions. Prohibitin is a mitochondrial inner-membrane protein which may act as a chaperone for the stabilization of mitochondrial proteins. Human prohibitin forms a heter-oligomeric complex with Bap-37 (prohibitin 2, a band 7 domain carrying homologue). This complex may protect non-assembled membrane proteins against proteolysis by the m-AAA protease. Prohibitin and Bap-37 yeast homologues have been implicated in yeast longevity and, in the maintenance of mitochondrial morphology.
Probab=100.00 E-value=7.8e-40 Score=272.65 Aligned_cols=192 Identities=64% Similarity=0.989 Sum_probs=179.9
Q ss_pred cEEEecCCeEEEEEecccceee-ceecCeeEEeccccceeEEEEeeeeeeeeeecccCCCcceEEEEEEEEEeecCCCHh
Q 023988 31 SLYTVDGGERAVLFDRFRGVID-ETIGEGTHFLIPWLQKPFIFDIRTRPHTFSSVSGTKDLQMVNLTLRVLSRPEVSRLP 109 (274)
Q Consensus 31 ~~~~V~~ge~gVv~~~~G~~~~-~~~~pG~~~~~P~~~~v~~~~~~~~~~~~~~~~~tkd~~~v~v~~~v~y~v~~~~~~ 109 (274)
||++|++|++||++ +||+... .+++||+||++||+++++.+|++.+.+++...+.|+|++.++++++++|++.+++++
T Consensus 1 ~~~~V~~g~~gVv~-~~g~~~~~~~~~pG~h~~~P~~~~v~~~~~r~~~~~~~~~~~t~d~~~V~v~~~v~y~v~~~~~~ 79 (196)
T cd03401 1 SLYNVDGGHRAVLF-NRGGGVKDLVYGEGLHFRIPWFQKPIIFDVRARPRNIESTTGSKDLQMVNITLRVLFRPDASQLP 79 (196)
T ss_pred CEEEECCCcEEEEE-EecCccccCccCCceEEEccccceeEEEEeeeeEEEEeecccCCCCeEEEEEEEEEEEeCHHHHH
Confidence 68999999999997 8887544 489999999999999999999999999988888999999999999999999988889
Q ss_pred HHHHHhccccccccccchHHHHHHHHhhcCChhHHhhchHHHHHHHHHHHHHHhhcCCeEEEEEEEeeccCCHHHHHHHH
Q 023988 110 YIFQHLGLEYDEKVLPSIGNEVLKAVVAQFNADQLLTERPHVSALVRESLIKRARDFNIVLDDVAITHLSYGAEFSRAVE 189 (274)
Q Consensus 110 ~~~~~~g~~~~~~~i~~~~~~~lr~~~~~~~~~ei~~~R~~i~~~i~~~l~~~l~~~Gi~v~~v~I~~i~~p~~~~~ai~ 189 (274)
.+|..+|.++.+..|.+.+++++|+++|+|+++|++++|++|++.|.+.+++.+++||+.|.++.|+++++|+++.++++
T Consensus 80 ~~~~~~~~~~~~~~i~~~v~~~lR~vi~~~~~~ei~~~R~~i~~~i~~~l~~~l~~~Gi~i~~v~i~~i~~p~~~~~ai~ 159 (196)
T cd03401 80 RIYQNLGEDYDERVLPSIINEVLKAVVAQFTAEELITQREEVSALIREALTERAKDFGIILDDVSITHLTFSKEFTKAVE 159 (196)
T ss_pred HHHHHhCcchHhhhhcHHHHHHHHHHHccCCHHHHHhhHHHHHHHHHHHHHHHHHhCCeEEEEEEEEeccCCHHHHHHHH
Confidence 99999997777888999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhh
Q 023988 190 QKQVAQQEAERSKFVVMKADQERRAAQLISEATS 223 (274)
Q Consensus 190 ~k~~A~qeae~a~~~~~~A~~ea~aa~~~~~a~~ 223 (274)
+|+.|+|++++++.++.+|++||++..+.|++-.
T Consensus 160 ~k~~a~q~~~~a~~~~~~a~~ea~~~~~~A~gea 193 (196)
T cd03401 160 AKQVAQQEAERAKFVVEKAEQEKQAAVIRAEGEA 193 (196)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 9999999999999999999999999888777643
No 6
>KOG3083 consensus Prohibitin [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.9e-40 Score=265.72 Aligned_cols=259 Identities=58% Similarity=0.937 Sum_probs=243.4
Q ss_pred hHhHHHHHHHHHHHHHHHHHHhhccEEEecCCeEEEEEecccceeeceecCeeEEeccccceeEEEEeeeeeeeeeeccc
Q 023988 7 AVSFLTNIARAAFGLGAAATVLNSSLYTVDGGERAVLFDRFRGVIDETIGEGTHFLIPWLQKPFIFDIRTRPHTFSSVSG 86 (274)
Q Consensus 7 ~~~~m~~~~~~~~~~~~~~~~~~~~~~~V~~ge~gVv~~~~G~~~~~~~~pG~~~~~P~~~~v~~~~~~~~~~~~~~~~~ 86 (274)
|.+++.++..+++.+.++..++.++.|.|+.|+++|+|.||.|+.+.+.+.|-||.+||.++-+.||.+.+...++....
T Consensus 2 aa~~l~~~~k~gl~l~v~~~~~~s~ly~vdgg~ravifdrf~gv~~~vvgegthflipw~qk~~i~d~rs~p~~v~~itG 81 (271)
T KOG3083|consen 2 AAKVLESIGKFGLALAVAGGVVNSALYNVDGGHRAVIFDRFRGVQDQVVGEGTHFLIPWVQKPIIFDCRSRPRNVPVITG 81 (271)
T ss_pred cchhhhhccccchhhHHhhhhhhhhhcccCCCceeEEeecccchhhhcccCCceeeeeeccCcEEEeccCCCcccccccC
Confidence 56778888888899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcceEEEEEEEEEeecCCCHhHHHHHhccccccccccchHHHHHHHHhhcCChhHHhhchHHHHHHHHHHHHHHhhcC
Q 023988 87 TKDLQMVNLTLRVLSRPEVSRLPYIFQHLGLEYDEKVLPSIGNEVLKAVVAQFNADQLLTERPHVSALVRESLIKRARDF 166 (274)
Q Consensus 87 tkd~~~v~v~~~v~y~v~~~~~~~~~~~~g~~~~~~~i~~~~~~~lr~~~~~~~~~ei~~~R~~i~~~i~~~l~~~l~~~ 166 (274)
|||-+.|++...+.++..++.++.+|+++|.+|.+..+..+....++.++++|+..|++++|+-+++.+.+.+.++...+
T Consensus 82 skdLQ~VniTlril~rp~~sqLP~If~~~G~dyDErVLpsI~~eiLKsVVa~FdA~eliTqRe~vS~~v~~~lt~rA~~F 161 (271)
T KOG3083|consen 82 SKDLQNVNITLRILFRPVVSQLPCIFTSIGEDYDERVLPSITTEILKSVVARFDAGELITQRELVSRQVSNDLTERAATF 161 (271)
T ss_pred chhhhcccceEEEEecccccccchHHHhhcccccccccccchHHHHHHHHHhccccchhhhhHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeEEEEEEEeeccCCHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH-----------HHHHHHHHHhhhcCcchhHHHHH
Q 023988 167 NIVLDDVAITHLSYGAEFSRAVEQKQVAQQEAERSKFVVMKADQER-----------RAAQLISEATSKFGLGLIELRRI 235 (274)
Q Consensus 167 Gi~v~~v~I~~i~~p~~~~~ai~~k~~A~qeae~a~~~~~~A~~ea-----------~aa~~~~~a~~~~~~~~~~~~~l 235 (274)
|+.+++|.|++..|-.++.++++.||.||||||||++.+++|++++ ++++++++++.+.+.-+++++.+
T Consensus 162 gl~LddvsiThltfGkEFt~AvE~KQVAQQEAErarFvVeKAeQqk~aavIsAEGds~aA~li~~sla~aG~gLielrrl 241 (271)
T KOG3083|consen 162 GLILDDVSITHLTFGKEFTEAVEAKQVAQQEAERARFVVEKAEQQKKAAVISAEGDSKAAELIANSLATAGDGLIELRRL 241 (271)
T ss_pred CeeechhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhheeecccchHHHHHHHHHHhhcCCceeeehhh
Confidence 9999999999999999999999999999999999987777765554 55899999998888999999999
Q ss_pred HHHHHHHHHhcCCCCEEEecCCCCCcceeccC
Q 023988 236 EASREIAATLARSPHVAYLPGGKNSNMLLALN 267 (274)
Q Consensus 236 ea~~~ia~~~~~~~~~i~l~~~~~~~~~~~~~ 267 (274)
|+-++++..++.++|+.++|+|. +++++++
T Consensus 242 EAa~dia~~Ls~s~nv~YLp~g~--s~l~~l~ 271 (271)
T KOG3083|consen 242 EAAEDIAYQLSRSRNVTYLPAGQ--SMLLQLN 271 (271)
T ss_pred hhHHHHHHHHhcCCCceeccCCc--ceeccCC
Confidence 99999999999999999999776 7777663
No 7
>cd03405 Band_7_HflC Band_7_HflC: The band 7 domain of flotillin (reggie) like proteins. This group includes proteins similar to prokaryotic HlfC (High frequency of lysogenization C). Although many members of the band 7 family are lipid raft associated, prokaryote plasma membranes lack cholesterol and are unlikely to have lipid raft domains. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Escherichia coli HflC is an integral membrane protein which may localize to the plasma membrane. HflC associates with another band 7 family member (HflK) to form an HflKC complex. HflKC interacts with FtsH in a large complex termed the FtsH holo-enzyme. FtsH is an AAA ATP-dependent protease which exerts progressive proteolysis against membrane-embedded and soluble substrate proteins. HflKC can modulate the activity of FtsH. HflKC plays a role in the decision between lysogenic and lytic cycle growth during la
Probab=100.00 E-value=3.7e-38 Score=270.85 Aligned_cols=205 Identities=26% Similarity=0.321 Sum_probs=180.1
Q ss_pred EEEecCCeEEEEEecccceeeceecCeeEEeccccceeEEEEeeeeeeeeee-cccCCCcceEEEEEEEEEeecCCCHhH
Q 023988 32 LYTVDGGERAVLFDRFRGVIDETIGEGTHFLIPWLQKPFIFDIRTRPHTFSS-VSGTKDLQMVNLTLRVLSRPEVSRLPY 110 (274)
Q Consensus 32 ~~~V~~ge~gVv~~~~G~~~~~~~~pG~~~~~P~~~~v~~~~~~~~~~~~~~-~~~tkd~~~v~v~~~v~y~v~~~~~~~ 110 (274)
+++|++||+||++ +||++.+.+++||+||++||+++++.+|++.+.++.+. .+.|+|+++++++++++||+. ++..
T Consensus 1 ~~iV~~ge~~Vv~-~~Gk~~~~~~~pG~~~~~P~i~~v~~v~~r~~~~~~~~~~v~T~D~~~v~v~~~v~yrI~--d~~~ 77 (242)
T cd03405 1 LFIVDEGEQAVVL-RFGEVVRVVTEPGLHFKLPFIQQVKKFDKRILTLDSDPQRVLTKDKKRLIVDAYAKWRIT--DPLR 77 (242)
T ss_pred CEEeCCCeEEEEE-EcCccccccCCCCeeEEcCCcceEEEEcCEEEeccCCcceEEccCCcEEEEEEEEEEEEc--CHHH
Confidence 5899999999996 99998766799999999999999999999999888754 489999999999999999995 6778
Q ss_pred HHHHhccc--cccccccchHHHHHHHHhhcCChhHHhhc-hHHHHHHHHHHHHHHhhcCCeEEEEEEEeeccCCHHHHHH
Q 023988 111 IFQHLGLE--YDEKVLPSIGNEVLKAVVAQFNADQLLTE-RPHVSALVRESLIKRARDFNIVLDDVAITHLSYGAEFSRA 187 (274)
Q Consensus 111 ~~~~~g~~--~~~~~i~~~~~~~lr~~~~~~~~~ei~~~-R~~i~~~i~~~l~~~l~~~Gi~v~~v~I~~i~~p~~~~~a 187 (274)
+|.+++.. ..+..|.+.+++++|+++++++++|++++ |++|++.+.+.+++.+++||++|.+|.|++|+||+++.++
T Consensus 78 ~~~~~~~~~~~~~~~i~~~~~~~lr~vi~~~~~~el~~~~R~~i~~~i~~~l~~~l~~~Gi~i~~v~i~~i~~p~~i~~a 157 (242)
T cd03405 78 FYQAVGGEERAAETRLDQIVNSALRAEFGKRTLIELVSGERGELMEEIRRAVAEEAKELGIEVVDVRIKRIDLPEEVSES 157 (242)
T ss_pred HHHHhcChHHHHHHHHHHHHHHHHHHHHccCCHHHHHHhHHHHHHHHHHHHHHHHHHccCcEEEEEEEEeccCCHHHHHH
Confidence 88887732 23478999999999999999999999987 9999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHH------------------------------hHHHHHHHHHHHHHHHHHHHHhhhcCcchhHH-HHHH
Q 023988 188 VEQKQVAQQEAER------------------------------SKFVVMKADQERRAAQLISEATSKFGLGLIEL-RRIE 236 (274)
Q Consensus 188 i~~k~~A~qeae~------------------------------a~~~~~~A~~ea~aa~~~~~a~~~~~~~~~~~-~~le 236 (274)
|++++.|+++.++ +++.+.+|++||+++++++++++++ |+++.+ ++||
T Consensus 158 i~~~~~ae~~~~a~~~~ae~~~~a~~~~aea~~~~~~~~Aea~a~a~~~~a~gea~a~~~~~~a~~~~-p~~~~~~~~l~ 236 (242)
T cd03405 158 VYRRMRAERERIAAEFRAEGEEEAERIRADADRERTVILAEAYREAQEIRGEGDAEAARIYAEAYGKD-PEFYAFYRSLE 236 (242)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCC-HHHHHHHHHHH
Confidence 9888877775321 1234667777788888888889887 999998 9999
Q ss_pred HHHH
Q 023988 237 ASRE 240 (274)
Q Consensus 237 a~~~ 240 (274)
+++.
T Consensus 237 ~~~~ 240 (242)
T cd03405 237 AYRN 240 (242)
T ss_pred HHHh
Confidence 9875
No 8
>TIGR01933 hflK HflK protein. HflK and HflC are paralogs encoded by tandem genes in Proteobacteria, spirochetes, and some other bacterial lineages. The HflKC complex is anchored in the membrane and exposed to the periplasm. The complex is not active as a protease, but rather binds to and appears to modulate the ATP-dependent protease FtsH. The overall function of HflKC is not fully described.//Regulation of FtsH by HflKC appears to be negative (PubMed:8947034,PubMed:96367)
Probab=100.00 E-value=2.7e-37 Score=268.30 Aligned_cols=225 Identities=19% Similarity=0.250 Sum_probs=185.5
Q ss_pred EEEecCCeEEEEEecccceeeceecCeeEEeccccceeEEEEeeeee-eeeeecccCCCcceEEEEEEEEEeecCCCHhH
Q 023988 32 LYTVDGGERAVLFDRFRGVIDETIGEGTHFLIPWLQKPFIFDIRTRP-HTFSSVSGTKDLQMVNLTLRVLSRPEVSRLPY 110 (274)
Q Consensus 32 ~~~V~~ge~gVv~~~~G~~~~~~~~pG~~~~~P~~~~v~~~~~~~~~-~~~~~~~~tkd~~~v~v~~~v~y~v~~~~~~~ 110 (274)
+++|++||+||++ +||++. .+++||+||++||+++++.+|++.+. +..+..+.|+|+..+.++++++||+. |+..
T Consensus 1 ~~iV~~ge~~Vv~-~fGk~~-~~l~pGl~~~~P~i~~v~~~~~~~~~~~~~~~~v~T~D~~~v~vd~~v~yrI~--d~~~ 76 (261)
T TIGR01933 1 IYTIGEAERGVVL-RFGKYH-RTVDPGLNWKPPFIEEVYPVNVTAVRNLRKQGLMLTGDENIVNVEMNVQYRIT--DPYK 76 (261)
T ss_pred CEEeCCCeEEEEE-EcCccc-cccCCcceEECCCceEEEEeeeEEEEecCCcCeEEeCCCCEEEEEEEEEEEEC--CHHH
Confidence 5899999999995 999976 58999999999999999999997654 22223478999999999999999995 4555
Q ss_pred HHHHhccccccccccchHHHHHHHHhhcCChhHHhh-chHHHHHHHHHHHHHHhhcC--CeEEEEEEEeeccCCHHHHHH
Q 023988 111 IFQHLGLEYDEKVLPSIGNEVLKAVVAQFNADQLLT-ERPHVSALVRESLIKRARDF--NIVLDDVAITHLSYGAEFSRA 187 (274)
Q Consensus 111 ~~~~~g~~~~~~~i~~~~~~~lr~~~~~~~~~ei~~-~R~~i~~~i~~~l~~~l~~~--Gi~v~~v~I~~i~~p~~~~~a 187 (274)
++. +.++.+..|.+.+++++|+++++++++++++ +|++|++.+.+.+++.++.| ||+|++|.|++++||+++.++
T Consensus 77 ~~~--~~~~~~~~l~~~~~s~lR~vig~~~l~eil~~~R~~i~~~i~~~l~~~~~~~~~GI~V~~v~I~~i~~p~~v~~a 154 (261)
T TIGR01933 77 YLF--SVENPEDSLRQATDSALRGVIGDSTMDDILTEGRSQIREDTKERLNEIIDNYDLGITVTDVNFQSARPPEEVKEA 154 (261)
T ss_pred HHH--hCCCHHHHHHHHHHHHHHHHHhhCcHHHHHHhCHHHHHHHHHHHHHHHHhhhcCCcEEEEEEEEecCCCHHHHHH
Confidence 443 3566778899999999999999999999998 89999999999999999965 999999999999999999999
Q ss_pred HHHHHHHHHHHHHh------------------------------HHHHHHHHHHHHHHHHHHHHhhhcCcchhHH-HHHH
Q 023988 188 VEQKQVAQQEAERS------------------------------KFVVMKADQERRAAQLISEATSKFGLGLIEL-RRIE 236 (274)
Q Consensus 188 i~~k~~A~qeae~a------------------------------~~~~~~A~~ea~aa~~~~~a~~~~~~~~~~~-~~le 236 (274)
+++++.|+|+++++ +..+++|++||++.++++++++++ |+++.+ +++|
T Consensus 155 ~~~~~~a~q~~~~~~~~ae~~~~~~~~~a~~~a~~~~~~Aea~~~~~~~~a~g~a~~~~~~~~ay~~~-p~~~~~~~~le 233 (261)
T TIGR01933 155 FDDVIIAREDEERYINEAEAYANEVVPKARGDAQRIIEEARGYKERRINRAKGDVARFTKLLAEYKKA-PDVTRERLYLE 233 (261)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhC-hHHHHHHHHHH
Confidence 99999988864431 133555666667777777888776 999988 9999
Q ss_pred HHHHHHHHhcCCCCEEEecCCCCCcceecc
Q 023988 237 ASREIAATLARSPHVAYLPGGKNSNMLLAL 266 (274)
Q Consensus 237 a~~~ia~~~~~~~~~i~l~~~~~~~~~~~~ 266 (274)
+++++. ++.+++++++++++.--++++
T Consensus 234 ~~~~~~---~~~~~~~~~~~~~~~~~~~~~ 260 (261)
T TIGR01933 234 TMEKVL---SNTRKVLLDDKKGNNLLYLPL 260 (261)
T ss_pred HHHHHH---ccCCeEEEECCCCCeeeeecC
Confidence 999953 445667888887743335554
No 9
>cd03407 Band_7_4 A subgroup of the band 7 domain of flotillin (reggie) like proteins. This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic H
Probab=100.00 E-value=1.9e-37 Score=269.05 Aligned_cols=217 Identities=19% Similarity=0.287 Sum_probs=175.9
Q ss_pred CCeEEEEEecccceeeceecCeeEEecccccee-EEEEeeeeeeeeeecccCCCcceEEEEEEEEEeecCCCHhHHHHHh
Q 023988 37 GGERAVLFDRFRGVIDETIGEGTHFLIPWLQKP-FIFDIRTRPHTFSSVSGTKDLQMVNLTLRVLSRPEVSRLPYIFQHL 115 (274)
Q Consensus 37 ~ge~gVv~~~~G~~~~~~~~pG~~~~~P~~~~v-~~~~~~~~~~~~~~~~~tkd~~~v~v~~~v~y~v~~~~~~~~~~~~ 115 (274)
+|++||+ .+||++. ++++||+||++||++++ ..+|++.++++++..+.|+|++.|++|++++|||.+..+..++.++
T Consensus 1 q~~~~Vv-~rfGk~~-~~l~pGlhf~~P~i~~v~~~~~~r~~~~~~~~~~lTkD~~~V~vd~~v~yrI~d~~~~~~~~~~ 78 (262)
T cd03407 1 QSQVAII-ERFGKFF-KVAWPGCHFVIPLVETVAGRLSLRVQQLDVRVETKTKDNVFVTVVGQIQYRVSEENATDAFYKL 78 (262)
T ss_pred CcEEEEE-eecCccc-ccCCCCeEEEeccccceeeEEeeeEEEecCCCceEcCCCCEEEEEEEEEEEECCcHHHHHHHHc
Confidence 5899999 5999986 58999999999999998 4899999999998889999999999999999999765554555554
Q ss_pred ccccccccccchHHHHHHHHhhcCChhHHhhchHHHHHHHHHHHHHHhhcCCeEEEEEEEeeccCCHHHHHHHHHHHHHH
Q 023988 116 GLEYDEKVLPSIGNEVLKAVVAQFNADQLLTERPHVSALVRESLIKRARDFNIVLDDVAITHLSYGAEFSRAVEQKQVAQ 195 (274)
Q Consensus 116 g~~~~~~~i~~~~~~~lr~~~~~~~~~ei~~~R~~i~~~i~~~l~~~l~~~Gi~v~~v~I~~i~~p~~~~~ai~~k~~A~ 195 (274)
+ .....|.+.+++++|+++|++++++++++|++|++.+.+.+++.+++|||.|++|.|++++||+++.++|++++.|+
T Consensus 79 ~--~~~~~l~~~~~s~lR~vig~~~l~eil~~R~~I~~~i~~~l~~~l~~~GI~V~~v~I~~i~~p~~v~~A~~~~~~A~ 156 (262)
T cd03407 79 G--NPEEQIQSYVFDVLRARIPKLTLDELFEQKDEIAKAVEEELREAMSRYGFEIVATLITDIDPDAEVKRAMNEINAAQ 156 (262)
T ss_pred C--CHHHHHHHHHHHHHHHHhcCccHHHHHhhHHHHHHHHHHHHHHHHHhcCcEEEEEEEEecCCCHHHHHHHHHHHHHH
Confidence 4 23457999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHh----H----HHHHHHH-----------HHHHHHHHHHHHhhh------------cCcchhH----HHHHHHHHH
Q 023988 196 QEAERS----K----FVVMKAD-----------QERRAAQLISEATSK------------FGLGLIE----LRRIEASRE 240 (274)
Q Consensus 196 qeae~a----~----~~~~~A~-----------~ea~aa~~~~~a~~~------------~~~~~~~----~~~lea~~~ 240 (274)
++++++ + ..+.+|+ ++|++.++.+++..+ ..|+..+ .+|+|++++
T Consensus 157 ~~~~a~~~~Aea~~~~~i~~A~~ea~a~~~~Aeg~a~a~~~~A~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~e~~~~ 236 (262)
T cd03407 157 RQRVAAVHKAEAEKIKDIKAAEADAEAKRLQGVGAAEQRQAIADGLRESILSLADAVPGMTAKDVMDLLLVNQYFDTLKA 236 (262)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhcccccchHHHHHHHHHHHHHHH
Confidence 976542 1 2233444 444444444444221 1133332 379999999
Q ss_pred HHHHhcCCCCEEEecCCCCC
Q 023988 241 IAATLARSPHVAYLPGGKNS 260 (274)
Q Consensus 241 ia~~~~~~~~~i~l~~~~~~ 260 (274)
++. ++++++++|++.++
T Consensus 237 ~~~---~~~kviv~p~~~~~ 253 (262)
T cd03407 237 YGR---SSSTVVFRPHGPGG 253 (262)
T ss_pred HHh---CCCCEEEecCCCcc
Confidence 864 34578999998776
No 10
>cd03403 Band_7_stomatin_like Band_7_stomatin_like: A subgroup of the band 7 domain of flotillin (reggie) like proteins similar to stomatin and podicin (two lipid raft-associated integral membrane proteins). Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Stomatin is widely expressed and, highly expressed in red blood cells. It localizes predominantly to the plasma membrane and to intracellular vesicles of the endocytic pathway, where it is present in higher order homo-oligomeric complexes (of between 9 and 12 monomers). Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and, is implicated in trafficking of Glut1 glucose transporters. Prohibitin is a mitochondrial inner-membrane protein hypothesized to act as a chaperone for the stabilization of mitochondrial proteins. Podicin local
Probab=100.00 E-value=2.2e-36 Score=255.37 Aligned_cols=210 Identities=24% Similarity=0.359 Sum_probs=184.4
Q ss_pred ecCCeEEEEEecccceeeceecCeeEEecccccee-EEEEeeeeeeeeeec-ccCCCcceEEEEEEEEEeecCCCHhHHH
Q 023988 35 VDGGERAVLFDRFRGVIDETIGEGTHFLIPWLQKP-FIFDIRTRPHTFSSV-SGTKDLQMVNLTLRVLSRPEVSRLPYIF 112 (274)
Q Consensus 35 V~~ge~gVv~~~~G~~~~~~~~pG~~~~~P~~~~v-~~~~~~~~~~~~~~~-~~tkd~~~v~v~~~v~y~v~~~~~~~~~ 112 (274)
|++||+||++ +||++.+ +++||+||++||++++ +.+|++.++++++.. +.|+|++++.+++++.||+. |+..++
T Consensus 1 V~~ge~~Vv~-~~G~~~~-~~~pG~~f~~P~~~~v~~~v~~r~~~~~~~~~~v~T~D~~~v~v~~~v~yrI~--d~~~~~ 76 (215)
T cd03403 1 VPQYERGVVE-RLGKYHR-TLGPGLHFIIPFIDRIAYKVDLREQVLDVPPQEVITKDNVTVRVDAVLYYRVV--DPVKAV 76 (215)
T ss_pred CCcceEEEEE-EcCcCcc-ccCCcEEEEeccceEEEEEEeeEEEEEccCCceeEcCCCCEEEEEEEEEEEEe--cHHHHH
Confidence 6899999996 9999875 6999999999999999 999999999998765 89999999999999999984 555555
Q ss_pred HHhccccccccccchHHHHHHHHhhcCChhHHhhchHHHHHHHHHHHHHHhhcCCeEEEEEEEeeccCCHHHHHHHHHHH
Q 023988 113 QHLGLEYDEKVLPSIGNEVLKAVVAQFNADQLLTERPHVSALVRESLIKRARDFNIVLDDVAITHLSYGAEFSRAVEQKQ 192 (274)
Q Consensus 113 ~~~g~~~~~~~i~~~~~~~lr~~~~~~~~~ei~~~R~~i~~~i~~~l~~~l~~~Gi~v~~v~I~~i~~p~~~~~ai~~k~ 192 (274)
.. .++++..+.+.+++++|+++++++++|++++|+++++.+.+.+++.+++|||+|++|.|+++++|+++.+++++++
T Consensus 77 ~~--~~~~~~~l~~~~~~~lr~~i~~~~~~el~~~R~~i~~~i~~~l~~~l~~~Gi~v~~v~i~~i~~p~~~~~ai~~~~ 154 (215)
T cd03403 77 YG--VEDYRYAISQLAQTTLRSVIGKMELDELLSEREEINAELVEILDEATDPWGVKVERVEIKDIILPQEIQEAMAKQA 154 (215)
T ss_pred hc--CCCHHHHHHHHHHHHHHHHHccccHHHHHhhHHHHHHHHHHHHHHHHhccCeEEEEEEEeeecCCHHHHHHHHHHH
Confidence 44 3445667999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhc--CcchhHHHHHHHHHHHHHHhcCCCCEEEecC
Q 023988 193 VAQQEAERSKFVVMKADQERRAAQLISEATSKF--GLGLIELRRIEASREIAATLARSPHVAYLPG 256 (274)
Q Consensus 193 ~A~qeae~a~~~~~~A~~ea~aa~~~~~a~~~~--~~~~~~~~~lea~~~ia~~~~~~~~~i~l~~ 256 (274)
.|++++++ .+.+|++|++++++.+++.++. +|.+++++++|+.+.++++ .+.++++|+
T Consensus 155 ~A~~~~~a---~i~~A~ge~~a~~~~aea~~~~~~~~~~~~~~~~e~~~~~~~~---~~~~~~~~~ 214 (215)
T cd03403 155 EAEREKRA---KIIEAEGERQAAILLAEAAKQAAINPAALQLRELETLEEIAKE---AASTVVFPA 214 (215)
T ss_pred HHHHHHHH---HHHHhHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhc---cCCeEEeeC
Confidence 99887654 6889999999999999998653 4889999999999998754 233445544
No 11
>cd03404 Band_7_HflK Band_7_HflK: The band 7 domain of flotillin (reggie) like proteins. This group includes proteins similar to prokaryotic HlfK (High frequency of lysogenization K). Although many members of the band 7 family are lipid raft associated, prokaryote plasma membranes lack cholesterol and are unlikely to have lipid raft domains. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Escherichia coli HflK is an integral membrane protein which may localize to the plasma membrane. HflK associates with another band 7 family member (HflC) to form an HflKC complex. HflKC interacts with FtsH in a large complex termed the FtsH holo-enzyme. FtsH is an AAA ATP-dependent protease which exerts progressive proteolysis against membrane-embedded and soluble substrate proteins. HflKC can modulate the activity of FtsH. HflKC plays a role in the decision between lysogenic and lytic cycle growth during la
Probab=100.00 E-value=8.5e-36 Score=259.59 Aligned_cols=175 Identities=23% Similarity=0.260 Sum_probs=146.8
Q ss_pred HHHHHHHHhhccEEEecCCeEEEEEecccceeeceecCeeEEeccccceeEEE-Eeeeeee------------ee-eecc
Q 023988 20 GLGAAATVLNSSLYTVDGGERAVLFDRFRGVIDETIGEGTHFLIPWLQKPFIF-DIRTRPH------------TF-SSVS 85 (274)
Q Consensus 20 ~~~~~~~~~~~~~~~V~~ge~gVv~~~~G~~~~~~~~pG~~~~~P~~~~v~~~-~~~~~~~------------~~-~~~~ 85 (274)
+++++++++++|+++|++||+||++ +||++. .+++||+||++||++++..+ |++.++. .. +..+
T Consensus 3 ~~~~~~~~~~~s~~~V~~ge~gVV~-~fGk~~-~~~~pGlh~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 80 (266)
T cd03404 3 AALLVILWLLSGFYIVQPGERGVVL-RFGKYS-RTVEPGLHWKLPYPIEVVEVVPVFQLRSVGIPVRVGSVRSVPGESLM 80 (266)
T ss_pred HHHHHHHHHHcEEEEECCCceEEeE-EcCccc-cccCCceeEecCCCcEEEEEecceeEEeeccccccccccCCCcccce
Confidence 4556667788999999999999995 999987 68999999999998887544 3432111 11 2347
Q ss_pred cCCCcceEEEEEEEEEeecCCCHhHHHHHhccccccccccchHHHHHHHHhhcCChhHHhhc-hHHHHHHHHHHHHHHhh
Q 023988 86 GTKDLQMVNLTLRVLSRPEVSRLPYIFQHLGLEYDEKVLPSIGNEVLKAVVAQFNADQLLTE-RPHVSALVRESLIKRAR 164 (274)
Q Consensus 86 ~tkd~~~v~v~~~v~y~v~~~~~~~~~~~~g~~~~~~~i~~~~~~~lr~~~~~~~~~ei~~~-R~~i~~~i~~~l~~~l~ 164 (274)
.|+||+.+.++++++||+. ++..++.. ..+.+..|.+.+++++|+++|+++++|++++ |+++.+.+.+.+++.++
T Consensus 81 ~T~D~~~v~vd~~v~yrI~--d~~~~~~~--~~~~~~~l~~~~~~~lr~~i~~~~~~eil~~~R~~i~~~i~~~l~~~~~ 156 (266)
T cd03404 81 LTGDENIVDVEFAVQYRIS--DPYDYLFN--VRDPEGTLRQAAESAMREVVGRSTLDDVLTEGREEIAQDVRELLQAILD 156 (266)
T ss_pred EeCCCCEEEEEEEEEEEEC--CHHHHHhh--CCCHHHHHHHHHHHHHHHHHhhCcHHHHHHhCHHHHHHHHHHHHHHHhh
Confidence 8999999999999999996 44444333 4556678999999999999999999999996 99999999999999999
Q ss_pred cC--CeEEEEEEEeeccCCHHHHHHHHHHHHHHHHHHH
Q 023988 165 DF--NIVLDDVAITHLSYGAEFSRAVEQKQVAQQEAER 200 (274)
Q Consensus 165 ~~--Gi~v~~v~I~~i~~p~~~~~ai~~k~~A~qeae~ 200 (274)
.| |++|.+|.|++++||+++.+++++++.|+|++++
T Consensus 157 ~~~~Gi~v~~v~i~~i~~p~~i~~a~~~~~~A~q~~~~ 194 (266)
T cd03404 157 AYKAGIEIVGVNLQDADPPEEVQDAFDDVNKARQDRER 194 (266)
T ss_pred ccCCCeEEEEEEEEeCCCCHHHHHHHHHHHHHHHHHHH
Confidence 76 9999999999999999999999999999997654
No 12
>cd03406 Band_7_3 A subgroup of the band 7 domain of flotillin (reggie) like proteins. This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic H
Probab=100.00 E-value=3.5e-34 Score=247.95 Aligned_cols=170 Identities=15% Similarity=0.219 Sum_probs=152.6
Q ss_pred hhccEEEecCCeEEEEEecccceeeceecCeeEEeccccceeEEEEeeeeeeeee-ecccCCCcceEEEE-EEEEEeecC
Q 023988 28 LNSSLYTVDGGERAVLFDRFRGVIDETIGEGTHFLIPWLQKPFIFDIRTRPHTFS-SVSGTKDLQMVNLT-LRVLSRPEV 105 (274)
Q Consensus 28 ~~~~~~~V~~ge~gVv~~~~G~~~~~~~~pG~~~~~P~~~~v~~~~~~~~~~~~~-~~~~tkd~~~v~v~-~~v~y~v~~ 105 (274)
+++|+++|++||+||++ +||++...+++||+||++||++++..+|++.++++.+ ..+.|+||+.+.+| +.++|.++|
T Consensus 1 ~~ssv~iV~ege~gVV~-RfGkv~~~~l~PGLHfkiPfId~V~~v~vrlq~~~~~~~~v~TkDg~~ItvD~i~v~~ivdp 79 (280)
T cd03406 1 LSSALHKIEEGHVGVYY-RGGALLTSTSGPGFHLMLPFITTYKSVQVTLQTDEVKNVPCGTSGGVMIYFDRIEVVNFLIP 79 (280)
T ss_pred CCceEEEECCCeEEEEE-ECCcccccccCCceEEecCCceEEEEEEeEEEEeccCCcccccCCCcEEEEEEEEEEEecCH
Confidence 46799999999999996 9999877789999999999999999999999998875 45889999999999 567888877
Q ss_pred CCHhHHHHHhccccccccccchHHHHHHHHhhcCChhHHhh-chHHHHHHHHHHHHHHhhcC--CeEEEEEEEeeccCCH
Q 023988 106 SRLPYIFQHLGLEYDEKVLPSIGNEVLKAVVAQFNADQLLT-ERPHVSALVRESLIKRARDF--NIVLDDVAITHLSYGA 182 (274)
Q Consensus 106 ~~~~~~~~~~g~~~~~~~i~~~~~~~lr~~~~~~~~~ei~~-~R~~i~~~i~~~l~~~l~~~--Gi~v~~v~I~~i~~p~ 182 (274)
......+.++|.++....|.+.+++++|+++|+++++|+++ +|+++.+.+++.+++.++.| ||+|.+|.|++++||+
T Consensus 80 ~~~~~~~~~y~~~~~~~~I~~~Vrsavr~vig~~tldeVis~~Rd~I~~~I~~~l~e~l~~y~~GI~I~dV~I~~id~P~ 159 (280)
T cd03406 80 DSVYDIVKNYTADYDKTLIFNKIHHELNQFCSVHTLQEVYIDLFDQIDENLKLALQKDLTRMAPGLEIQAVRVTKPKIPE 159 (280)
T ss_pred HHHHHHHHHHhHhhHHHHHHHHHHHHHHHHhhhCCHHHHHhccHHHHHHHHHHHHHHHHhccCCCcEEEEEEEEecCCCH
Confidence 76666666677778899999999999999999999999998 89999999999999999987 9999999999999999
Q ss_pred HHHHHHHHHHHHHHHHH
Q 023988 183 EFSRAVEQKQVAQQEAE 199 (274)
Q Consensus 183 ~~~~ai~~k~~A~qeae 199 (274)
++.+++ ++|.||++..
T Consensus 160 ~V~~af-erM~aER~k~ 175 (280)
T cd03406 160 AIRRNY-ELMEAEKTKL 175 (280)
T ss_pred HHHHHH-HHHHHHHHhh
Confidence 999998 5777777654
No 13
>KOG2621 consensus Prohibitins and stomatins of the PID superfamily [Energy production and conversion]
Probab=100.00 E-value=4e-34 Score=239.09 Aligned_cols=241 Identities=21% Similarity=0.261 Sum_probs=207.3
Q ss_pred hhhHhHHHHHHHHHHHHHHHHHHhhccEEEecCCeEEEEEecccceee-ceecCeeEEeccccceeEEEEeeeeeeeeee
Q 023988 5 QAAVSFLTNIARAAFGLGAAATVLNSSLYTVDGGERAVLFDRFRGVID-ETIGEGTHFLIPWLQKPFIFDIRTRPHTFSS 83 (274)
Q Consensus 5 ~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~V~~ge~gVv~~~~G~~~~-~~~~pG~~~~~P~~~~v~~~~~~~~~~~~~~ 83 (274)
+.++..+-.++.++++++-.-+-+++|+.+|++.|++|+| |+|++.. ...+||+.|++|+++++.++|+|++.++++.
T Consensus 28 ~~~~~~~l~~~S~llvi~TfP~S~~fclKiv~eYeR~VIf-RLGRl~~~~~rGPGi~fvlPCIDt~~kVDLRt~sfnVPp 106 (288)
T KOG2621|consen 28 LGACEWLLVILSFLLVLMTFPISIWFCLKIVQEYERAVIF-RLGRLRTGGARGPGLFFLLPCIDTFRKVDLRTQSFNVPP 106 (288)
T ss_pred cchHHHHHHHHHHHHHHHHhHHHHHHHHHhhHHHhhhhhe-eeeeccccCCCCCCeEEEecccceeeeeeeeEEeecCCH
Confidence 3666766666666666666777788999999999999999 9999743 5779999999999999999999999999998
Q ss_pred c-ccCCCcceEEEEEEEEEeecCCCHhHHHHHhccccccccccchHHHHHHHHhhcCChhHHhhchHHHHHHHHHHHHHH
Q 023988 84 V-SGTKDLQMVNLTLRVLSRPEVSRLPYIFQHLGLEYDEKVLPSIGNEVLKAVVAQFNADQLLTERPHVSALVRESLIKR 162 (274)
Q Consensus 84 ~-~~tkd~~~v~v~~~v~y~v~~~~~~~~~~~~g~~~~~~~i~~~~~~~lr~~~~~~~~~ei~~~R~~i~~~i~~~l~~~ 162 (274)
+ +.|||.+.+.+|+.++||+. |+-.-+.+ .++...-.+-..++.+|+++++.++.|++++|+.|+.++...|++.
T Consensus 107 qeIltkDsvtvsVdAvVyyri~--dpi~sv~~--V~Da~~sTr~lAqttLrn~lgtk~L~eils~r~~is~~~~~~Ld~~ 182 (288)
T KOG2621|consen 107 QEILTKDSVTISVDAVVYYRIS--DPIIAVNN--VGDADNATRLLAQTTLRNYLGTKTLSEILSSREVIAQEAQKALDEA 182 (288)
T ss_pred HHHhcccceEEEeceEEEEEec--CHHHHHHh--ccCHHHHHHHHHHHHHHHHHccCcHHHHHHhHHHHHHHHHHHhhhc
Confidence 7 89999999999999999996 44333333 5666666788999999999999999999999999999999999999
Q ss_pred hhcCCeEEEEEEEeeccCCHHHHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHHHHHHhh---hcCcchhHHHHHHHH
Q 023988 163 ARDFNIVLDDVAITHLSYGAEFSRAVEQKQVAQQEAER-SKFVVMKADQERRAAQLISEATS---KFGLGLIELRRIEAS 238 (274)
Q Consensus 163 l~~~Gi~v~~v~I~~i~~p~~~~~ai~~k~~A~qeae~-a~~~~~~A~~ea~aa~~~~~a~~---~~~~~~~~~~~lea~ 238 (274)
.+.||++|++|.|+||++|.+.+.++. |++||.| |+++++.||+|..+.+.++++.. + +|..+++||++++
T Consensus 183 T~~WGvkVeRVEikDvrlp~qlqrama----aeAeA~reA~Akviaaege~~as~al~~aa~v~~~-sp~alqLryLqtl 257 (288)
T KOG2621|consen 183 TEPWGVKVERVEIKDVRLPAQLQRAMA----AEAEATREARAKVIAAEGEKKASEALKEAADVISE-SPIALQLRYLQTL 257 (288)
T ss_pred ccccceEEEEEEEeeeechHhhhhhhh----chhhhhhhhhhhHHHHHhhhHHHHHHHHhhccccC-Cchhhhhhhhhcc
Confidence 999999999999999999999888765 4777665 77899999999999999988853 4 4999999999999
Q ss_pred HHHHHHhcCCCCEEEecCCC
Q 023988 239 REIAATLARSPHVAYLPGGK 258 (274)
Q Consensus 239 ~~ia~~~~~~~~~i~l~~~~ 258 (274)
..++ ++++++++.|-.-
T Consensus 258 ~sia---~e~~~tivfP~p~ 274 (288)
T KOG2621|consen 258 NSIA---AEKNSTIVFPLPI 274 (288)
T ss_pred hhhh---cCCCCCcccCCCH
Confidence 8886 3577788888443
No 14
>COG0330 HflC Membrane protease subunits, stomatin/prohibitin homologs [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.3e-32 Score=237.81 Aligned_cols=235 Identities=27% Similarity=0.376 Sum_probs=189.1
Q ss_pred HHHHHHHHHhhccEEEecCCeEEEEEecccceeeceec-CeeEEeccc---c-ceeEEEEeeeeeeee-eec-ccCCCcc
Q 023988 19 FGLGAAATVLNSSLYTVDGGERAVLFDRFRGVIDETIG-EGTHFLIPW---L-QKPFIFDIRTRPHTF-SSV-SGTKDLQ 91 (274)
Q Consensus 19 ~~~~~~~~~~~~~~~~V~~ge~gVv~~~~G~~~~~~~~-pG~~~~~P~---~-~~v~~~~~~~~~~~~-~~~-~~tkd~~ 91 (274)
++++++++++++++++|++++.+++. +||++.. .++ ||+||++|| + .....++.+.++++. +.+ +.|+|+.
T Consensus 8 ~~l~~~~~~~~~~~~~v~~~~~~vv~-r~G~~~~-~~~~pGl~f~iP~~~~~~~~~~~~~~~~~~~d~~~~q~viT~D~~ 85 (291)
T COG0330 8 ILLVILIVLLFSSIFVVKEGERGVVL-RFGRYTR-TLGEPGLHFKIPFPEAIEEVVVRVDLRERTLDVGPPQEVITKDNV 85 (291)
T ss_pred HHHHHHHHHHHceeEEEcCCceEEEE-Eecceee-ecCCCceEEEcCCccceeeeeeeeeeEEEEeccCCcceEEecCCC
Confidence 35666788889999999999999995 9999864 677 999999999 3 334678888888888 554 8999999
Q ss_pred eEEEEEEEEEeecCCCHhHHHHHhccccccccccchHHHHHHHHhhcCChhHHhhchH-HHHHHHHHHHHHHhhcCCeEE
Q 023988 92 MVNLTLRVLSRPEVSRLPYIFQHLGLEYDEKVLPSIGNEVLKAVVAQFNADQLLTERP-HVSALVRESLIKRARDFNIVL 170 (274)
Q Consensus 92 ~v~v~~~v~y~v~~~~~~~~~~~~g~~~~~~~i~~~~~~~lr~~~~~~~~~ei~~~R~-~i~~~i~~~l~~~l~~~Gi~v 170 (274)
.+.+|++++||+. |+..++.+ .+.++..+.+.+++.+|++++++++++++++|+ .|+..+.+.+++.+++||+.|
T Consensus 86 ~V~vd~~v~~rv~--d~~~~~~~--v~~~~~~l~~~~~~~lR~vig~~~~~e~~~~~~~~i~~~i~~~l~~~~~~~Gi~V 161 (291)
T COG0330 86 IVSVDAVVQYRVT--DPQKAVYN--VENAEAALRQLVQSALRSVIGRMTLDELLTERRAEINAKIREILDEAADPWGIKV 161 (291)
T ss_pred EEEEEEEEEEEEc--CHHHHHHh--cCCHHHHHHHHHHHHHHHHHccccHHHHhhCchHHHHHHHHHHHHHhhhhcCcEE
Confidence 9999999999996 45554444 455888899999999999999999999999888 999999999999999999999
Q ss_pred EEEEEeeccCCHHHHHHHHHHHHHHHHHHH----h----HHHHHHHHHHHHHHHHHHHHhh-------------------
Q 023988 171 DDVAITHLSYGAEFSRAVEQKQVAQQEAER----S----KFVVMKADQERRAAQLISEATS------------------- 223 (274)
Q Consensus 171 ~~v~I~~i~~p~~~~~ai~~k~~A~qeae~----a----~~~~~~A~~ea~aa~~~~~a~~------------------- 223 (274)
.+|.|+++++|+++.+++++++.|+++.++ | +..+.+|+++++++++++++.+
T Consensus 162 ~~V~i~~i~~p~ev~~a~~~~~~Aer~~ra~i~~Ae~~~~~~~~~a~g~~~a~~i~aea~~~a~~~~~a~~~~~~~~~~~ 241 (291)
T COG0330 162 VDVEIKDIDPPEEVQAAMEKQMAAERDKRAEILEAEGEAQAAILRAEGEAEAAIILAEAEAEAEVIARAEADAAKIIAAA 241 (291)
T ss_pred EEEEEeecCCCHHHHHHHHHHHHHHHHHHHHHHHhHhHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHhhccHHHHHHHhh
Confidence 999999999999999999999999987544 1 1223456666666666665542
Q ss_pred --hc--CcchhHHHHHHHHHHHHHHhcCCCCEEEecCCCCCc
Q 023988 224 --KF--GLGLIELRRIEASREIAATLARSPHVAYLPGGKNSN 261 (274)
Q Consensus 224 --~~--~~~~~~~~~lea~~~ia~~~~~~~~~i~l~~~~~~~ 261 (274)
+. .+.+..+|+++.+.+.+.. ++++++++|++..+.
T Consensus 242 ~~~~~~~~~~~~~r~~~~~~~~~~~--~~~~~v~~p~~~~~~ 281 (291)
T COG0330 242 LREAPAAPQALAQRYLEELLEIALA--GNSKVVVVPNSAGGA 281 (291)
T ss_pred cccccchhHHHHHHHHHHHHHHhhC--CCCeEEEecCCccch
Confidence 21 2456677999999887632 345677787775444
No 15
>cd03402 Band_7_2 A subgroup of the band 7 domain of flotillin (reggie) like proteins. This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic H
Probab=100.00 E-value=1.1e-31 Score=226.09 Aligned_cols=178 Identities=18% Similarity=0.204 Sum_probs=156.8
Q ss_pred cEEEecCCeEEEEEecccceeeceecCeeEEeccccceeEEEEeeeeeeeeeec-ccCCCcceEEEEEEEEEeecCCCHh
Q 023988 31 SLYTVDGGERAVLFDRFRGVIDETIGEGTHFLIPWLQKPFIFDIRTRPHTFSSV-SGTKDLQMVNLTLRVLSRPEVSRLP 109 (274)
Q Consensus 31 ~~~~V~~ge~gVv~~~~G~~~~~~~~pG~~~~~P~~~~v~~~~~~~~~~~~~~~-~~tkd~~~v~v~~~v~y~v~~~~~~ 109 (274)
|+++|+|||+||+ .+||++.+.+.+||+||++||++ ..++|+|.++++.+.+ +.|+|+.++.+++.++|||. |+.
T Consensus 1 g~~iV~~ge~~Vv-~rfGk~~~t~~~pGL~~~~P~~~-~~~vd~R~~~~~~~~~~v~T~D~~~v~V~~~V~~rV~--Dp~ 76 (219)
T cd03402 1 GLFVVEPNQARVL-VLFGRYIGTIRRTGLRWVNPFSS-KKRVSLRVRNFESEKLKVNDANGNPIEIAAVIVWRVV--DTA 76 (219)
T ss_pred CeEEECCCeeEEE-EEcCcCcccccCCceEEEeccce-EEEEeeEEEEecCCCceeEcCCCCEEEEEEEEEEEEc--CHH
Confidence 6899999999999 49999887666999999999985 5889999999988865 89999999999999999995 555
Q ss_pred HHHHHhccccccccccchHHHHHHHHhhcCChhHHhh-------chHHHHHHHHHHHHHHhhcCCeEEEEEEEeeccCCH
Q 023988 110 YIFQHLGLEYDEKVLPSIGNEVLKAVVAQFNADQLLT-------ERPHVSALVRESLIKRARDFNIVLDDVAITHLSYGA 182 (274)
Q Consensus 110 ~~~~~~g~~~~~~~i~~~~~~~lr~~~~~~~~~ei~~-------~R~~i~~~i~~~l~~~l~~~Gi~v~~v~I~~i~~p~ 182 (274)
.++.. .++++..+.+.+++++|+++|+|+++++++ +|+++++++.+.+++.++.||++|.+++|++++||+
T Consensus 77 ka~~~--v~~~~~~l~~~~~salR~vig~~~~d~il~~~~~l~~~r~~I~~~l~~~l~~~l~~~GI~V~~v~I~~l~~p~ 154 (219)
T cd03402 77 KAVFN--VDDYEEFVHIQSESALRHVASQYPYDDPVNKETSLRGNSDEVSDELARELQERLAVAGVEVVEARITHLAYAP 154 (219)
T ss_pred HHHHH--cCCHHHHHHHHHHHHHHHHHccCcHHHHhccccccccCHHHHHHHHHHHHHHHHHhhCcEEEEEEEEeecCCH
Confidence 55333 355577899999999999999999999985 579999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 023988 183 EFSRAVEQKQVAQQEAERSKFVVMKADQERRA 214 (274)
Q Consensus 183 ~~~~ai~~k~~A~qeae~a~~~~~~A~~ea~a 214 (274)
++.++|.++|+|+++.++.+...+.|.+-.+.
T Consensus 155 ei~~am~~R~~Ae~~~~Ar~~~~~Ga~~~~~~ 186 (219)
T cd03402 155 EIAQAMLQRQQASAIIAARRKIVEGAVGMVEM 186 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccchHHHH
Confidence 99999999999999988877766666555544
No 16
>PF01145 Band_7: SPFH domain / Band 7 family; InterPro: IPR001107 Band 7 protein is an integral membrane protein which is thought to regulate cation conductance. A variety of proteins belong to this family. These include the prohibitins, cytoplasmic anti-proliferative proteins and stomatin, an erythrocyte membrane protein. Bacterial HflC protein also belongs to this family. Note: Band 4.1 (IPR021187 from INTERPRO) and Band 7 proteins refer to human erythrocyte membrane proteins separated by SDS polyacrylamide gels and stained with coomassie blue [].; PDB: 2RPB_A 3BK6_B 1WIN_A.
Probab=99.97 E-value=2.2e-31 Score=218.03 Aligned_cols=174 Identities=32% Similarity=0.507 Sum_probs=121.2
Q ss_pred EEecCCeEEEEEecccceeeceecCeeEEeccccceeEEEEeeeeeeeeee---cccCCCcceEEEEEEEEEeecCCCHh
Q 023988 33 YTVDGGERAVLFDRFRGVIDETIGEGTHFLIPWLQKPFIFDIRTRPHTFSS---VSGTKDLQMVNLTLRVLSRPEVSRLP 109 (274)
Q Consensus 33 ~~V~~ge~gVv~~~~G~~~~~~~~pG~~~~~P~~~~v~~~~~~~~~~~~~~---~~~tkd~~~v~v~~~v~y~v~~~~~~ 109 (274)
++|++||+||++ ++|++.. +++||+||++||+++++.+|++.+++++.. .+.|+|++++.+++++.|++ +++.
T Consensus 1 ~~V~~g~~~V~~-~~G~~~~-~~~~G~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~t~D~~~v~v~~~v~y~i--~~~~ 76 (179)
T PF01145_consen 1 YTVPPGEVGVVV-RFGKVKD-VLGPGLHFVIPFIQKVYVYPTRVQTIEFTREPITVRTKDGVPVDVDVTVTYRI--EDPP 76 (179)
T ss_dssp ---------------------------------EEE--S--SS-EEEEEEE--EEEE-TTS-EEEEEEEEEEEE--S-CC
T ss_pred CEeCCCEEEEEE-ECCeEeE-EECCCeEEEeCCcCeEEEEeCEEEecccchhhhhhhhcccceeeeeEEEEEEe--chHH
Confidence 579999999996 7999875 899999999999999999999999999998 79999999999999999999 5777
Q ss_pred HHHHHh--ccccccccccchHHHHHHHHhhcCChhHHhhchHHHHHHHHHHHHHHhhcCCeEEEEEEEeeccCCHHHHHH
Q 023988 110 YIFQHL--GLEYDEKVLPSIGNEVLKAVVAQFNADQLLTERPHVSALVRESLIKRARDFNIVLDDVAITHLSYGAEFSRA 187 (274)
Q Consensus 110 ~~~~~~--g~~~~~~~i~~~~~~~lr~~~~~~~~~ei~~~R~~i~~~i~~~l~~~l~~~Gi~v~~v~I~~i~~p~~~~~a 187 (274)
.++.++ +.++.+..|++.+++++|++++++++++++++|.++.+.+.+.+++.++++|++|.+|.|+++++|+++.++
T Consensus 77 ~~~~~~~~~~~~~~~~l~~~~~~~~r~~~~~~~~~~~~~~r~~~~~~v~~~l~~~~~~~Gi~i~~v~i~~~~~~~~~~~~ 156 (179)
T PF01145_consen 77 KFVQNYEGGEEDPENLLRQIVESALREVISSYSLEEIYSNREEIADEVREQLQEALEEYGIEITSVQITDIDPPQEVEEA 156 (179)
T ss_dssp CCCCCCSS-HCHHHHHHHHHHHHHHHHHHHCS-HHHHHHTHHHHHHHHHHHHHHHHGGGTEEEEEEEEEEEEECTTHHHH
T ss_pred HHHHhhhcchhhhhhhhhhhhhhhhheEeeeeehHHhhhhhhhhhHhHHHHHhhhccccEEEEEEEEEeecCCCHHHHHH
Confidence 888887 357788999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHH
Q 023988 188 VEQKQVAQQEAERSKFVVMKADQER 212 (274)
Q Consensus 188 i~~k~~A~qeae~a~~~~~~A~~ea 212 (274)
+++++.|+++++ +.+..+|++||
T Consensus 157 i~~~~~a~~~~~--~~~~~~a~~ea 179 (179)
T PF01145_consen 157 IEEKQRAEQEAQ--QAEIERAEAEA 179 (179)
T ss_dssp HHHHHHHHHHH---HHHHHHHHHHH
T ss_pred HHHHHHHHHHHH--HHHHHHHhhCC
Confidence 999999999886 44455555554
No 17
>smart00244 PHB prohibitin homologues. prohibitin homologues
Probab=99.96 E-value=3.5e-29 Score=201.42 Aligned_cols=157 Identities=29% Similarity=0.463 Sum_probs=139.5
Q ss_pred ccEEEecCCeEEEEEecccceeeceecCeeEEeccccceeEEEEeeeeeeeeee-cccCCCcceEEEEEEEEEeecCCCH
Q 023988 30 SSLYTVDGGERAVLFDRFRGVIDETIGEGTHFLIPWLQKPFIFDIRTRPHTFSS-VSGTKDLQMVNLTLRVLSRPEVSRL 108 (274)
Q Consensus 30 ~~~~~V~~ge~gVv~~~~G~~~~~~~~pG~~~~~P~~~~v~~~~~~~~~~~~~~-~~~tkd~~~v~v~~~v~y~v~~~~~ 108 (274)
+|+++|++||+||++ +||++.+ +++||+||++||+++++.+|++.++++.+. .+.|+|++++.+++.+.||+. +..
T Consensus 1 ~~~~~V~~g~~~v~~-~~G~~~~-~~~pG~~~~~P~~~~~~~~~~~~~~~~~~~~~~~t~d~~~v~v~~~v~~rv~-d~~ 77 (160)
T smart00244 1 AAIKVVGEGEAGVVE-RLGRVLR-VLGPGLHFLIPFIDRVKKVDLRAQTDDVPPQEIITKDNVKVSVDAVVYYRVL-DPL 77 (160)
T ss_pred CcEEEEcccEEEEEE-ecCcccc-ccCCCEEEEecceeEEEEEeeEEEeecCCceEEEecCCcEEEEeEEEEEEEc-cHH
Confidence 589999999999995 9999876 899999999999999999999999998876 479999999999999999974 233
Q ss_pred hHHHHHhccccccccccchHHHHHHHHhhcCChhHHhh-chHHHHHHHHHHHHHHhhcCCeEEEEEEEeeccCCHHHHHH
Q 023988 109 PYIFQHLGLEYDEKVLPSIGNEVLKAVVAQFNADQLLT-ERPHVSALVRESLIKRARDFNIVLDDVAITHLSYGAEFSRA 187 (274)
Q Consensus 109 ~~~~~~~g~~~~~~~i~~~~~~~lr~~~~~~~~~ei~~-~R~~i~~~i~~~l~~~l~~~Gi~v~~v~I~~i~~p~~~~~a 187 (274)
..++...|.+ ...+.+.+++++|+++++++++|+++ +|+++++.+.+.+++.++++|+++.++.|+++++|++++++
T Consensus 78 ~~~~~~~~~~--~~~l~~~i~~~ir~~i~~~~~~~i~~~~r~~i~~~v~~~l~~~~~~~Gi~i~~v~i~~i~~p~~i~~a 155 (160)
T smart00244 78 KAVYRVLDAD--YAVIEQLAQTTLRSVIGKMTLDELLTDEREKISENIREELNERAEAWGIEVEDVEIKDIRLPEEIQEA 155 (160)
T ss_pred HHhhhcCCHH--HHHHHHHHHHHHHHHHccccHHHHHHhhHHHHHHHHHHHHHHHHHhCCCEEEEEEEEecCCCHHHHHH
Confidence 3344433322 25799999999999999999999999 79999999999999999999999999999999999999999
Q ss_pred HHHH
Q 023988 188 VEQK 191 (274)
Q Consensus 188 i~~k 191 (274)
+++|
T Consensus 156 i~~k 159 (160)
T smart00244 156 MEQQ 159 (160)
T ss_pred HHhh
Confidence 9975
No 18
>KOG2620 consensus Prohibitins and stomatins of the PID superfamily [Energy production and conversion]
Probab=99.95 E-value=4.6e-28 Score=200.46 Aligned_cols=163 Identities=18% Similarity=0.213 Sum_probs=138.0
Q ss_pred ccEEE--ecCCeEEEEEecccceeeceecCeeEEeccccceeEE-EEee-eeeeeeeecccCCCcceEEEEEEEEEeecC
Q 023988 30 SSLYT--VDGGERAVLFDRFRGVIDETIGEGTHFLIPWLQKPFI-FDIR-TRPHTFSSVSGTKDLQMVNLTLRVLSRPEV 105 (274)
Q Consensus 30 ~~~~~--V~~ge~gVv~~~~G~~~~~~~~pG~~~~~P~~~~v~~-~~~~-~~~~~~~~~~~tkd~~~v~v~~~v~y~v~~ 105 (274)
+|+.. ||+.+++|+ +||||+. ++++||+||..|+++++.. .+++ .+..+....+.|+||+.+.++.+++||+-.
T Consensus 5 ~n~vi~~VpQ~~a~Vv-ER~GkF~-~iLePG~~fl~p~~d~i~~v~~lkeia~~~~~q~aiTkDNV~v~idgvly~rv~d 82 (301)
T KOG2620|consen 5 TNTVIRFVPQQEAAVV-ERFGKFH-RILEPGLHFLPPVIDKIAYVHSLKEIAILDPKQEAITKDNVFVQIDGVLYYRVVD 82 (301)
T ss_pred ceeeEEeechhHhHHH-HHhhhhh-hhcCCcceechhhhhhHHHHHHHHHHhhcccccceeecccEEEEEEEEEEEEEec
Confidence 45555 999999999 8999986 5999999999999887643 3333 334444455899999999999999999852
Q ss_pred CCHhHHHHHhccccccccccchHHHHHHHHhhcCChhHHhhchHHHHHHHHHHHHHHhhcCCeEEEEEEEeeccCCHHHH
Q 023988 106 SRLPYIFQHLGLEYDEKVLPSIGNEVLKAVVAQFNADQLLTERPHVSALVRESLIKRARDFNIVLDDVAITHLSYGAEFS 185 (274)
Q Consensus 106 ~~~~~~~~~~g~~~~~~~i~~~~~~~lr~~~~~~~~~ei~~~R~~i~~~i~~~l~~~l~~~Gi~v~~v~I~~i~~p~~~~ 185 (274)
+.. --..||.++++..|.+++++.+|+.++++++|.++.+|+.++..|.+++++.++.||++|....|+||.+|+.+.
T Consensus 83 -p~~-~dAsYgvenp~~aI~qlaqttmRsevgkltLD~vFeer~~ln~sI~eainkA~~~wG~~clr~eIrDI~pp~~V~ 160 (301)
T KOG2620|consen 83 -PYA-DDASYGVENPEYAIQQLAQTTMRSEVGKLTLDKVFEERNSLNKSIVEAINKAMEAWGYECLRYEIRDIEPPPSVK 160 (301)
T ss_pred -ccc-cccccccCCHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhhcCCCHHHH
Confidence 222 123366788899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHH
Q 023988 186 RAVEQKQVAQQ 196 (274)
Q Consensus 186 ~ai~~k~~A~q 196 (274)
.+|+....|++
T Consensus 161 ~AM~~q~~AeR 171 (301)
T KOG2620|consen 161 RAMNMQNEAER 171 (301)
T ss_pred HHHHHHHHHHH
Confidence 99987555555
No 19
>KOG2962 consensus Prohibitin-related membrane protease subunits [General function prediction only]
Probab=99.91 E-value=1.2e-22 Score=165.36 Aligned_cols=169 Identities=13% Similarity=0.244 Sum_probs=148.8
Q ss_pred HHHHHHHHhhccEEEecCCeEEEEEecccceeeceecCeeEEeccccceeEEEEeeeeeeeeeec-ccCCCcceEEEEE-
Q 023988 20 GLGAAATVLNSSLYTVDGGERAVLFDRFRGVIDETIGEGTHFLIPWLQKPFIFDIRTRPHTFSSV-SGTKDLQMVNLTL- 97 (274)
Q Consensus 20 ~~~~~~~~~~~~~~~V~~ge~gVv~~~~G~~~~~~~~pG~~~~~P~~~~v~~~~~~~~~~~~~~~-~~tkd~~~v~v~~- 97 (274)
++.+++.+++++++.|++|++||.| |-|.....+.+||+|+.+||+.++..+.++.|+-++... |.|+.|+.+.+|-
T Consensus 11 ~~a~~~~~~~s~vHkieEGHvgvYy-RGGALL~~~t~PG~Hl~lPFiTt~ksVQvTLQTDev~nvPCGTsGGVlIyfdrI 89 (322)
T KOG2962|consen 11 AIALLVAFLSSAVHKIEEGHVGVYY-RGGALLTSITGPGFHLMLPFITTYKSVQVTLQTDEVKNVPCGTSGGVLIYFDRI 89 (322)
T ss_pred HHHHHHHHHHHHHhhcccCceEEEE-ecceeeeccCCCCcEEEeeeeeceeeeEEEeeccccccCCCCCCCcEEEEEehh
Confidence 3445566777889999999999998 877777779999999999999999999999999888765 9999999999883
Q ss_pred EEEEeecCCCHhHHHHHhccccccccccchHHHHHHHHhhcCChhHHhh-chHHHHHHHHHHHHHHhhcC--CeEEEEEE
Q 023988 98 RVLSRPEVSRLPYIFQHLGLEYDEKVLPSIGNEVLKAVVAQFNADQLLT-ERPHVSALVRESLIKRARDF--NIVLDDVA 174 (274)
Q Consensus 98 ~v~y~v~~~~~~~~~~~~g~~~~~~~i~~~~~~~lr~~~~~~~~~ei~~-~R~~i~~~i~~~l~~~l~~~--Gi~v~~v~ 174 (274)
.+.-.+.|+.+-....+|+.+|...+|-+.+...++..||.+++.|+|- --++|.++++..|+.++..+ |++|..|+
T Consensus 90 EVVN~L~~d~Vydiv~NYtvdYD~~lIfnKiHHE~NQFCS~HtLQeVYIdlFDqIDE~lK~ALQ~Dl~~mAPGl~iqaVR 169 (322)
T KOG2962|consen 90 EVVNFLRPDAVYDIVKNYTVDYDKTLIFNKIHHELNQFCSVHTLQEVYIDLFDQIDENLKDALQADLTRMAPGLEIQAVR 169 (322)
T ss_pred hhhhhhchhHHHHHHHHcccCCcchhhhhHHHHHHHhHhhhhHHHHHHHHHHHHHhHHHHHHHHHHHHhhCCCcEEEEEE
Confidence 2223356667777888899999999999999999999999999999997 48999999999999999987 99999999
Q ss_pred EeeccCCHHHHHHHH
Q 023988 175 ITHLSYGAEFSRAVE 189 (274)
Q Consensus 175 I~~i~~p~~~~~ai~ 189 (274)
++....|+.++..++
T Consensus 170 VTKPkIPEaiRrN~E 184 (322)
T KOG2962|consen 170 VTKPKIPEAIRRNFE 184 (322)
T ss_pred ecCCCChHHHHHhHH
Confidence 999999999999886
No 20
>cd03400 Band_7_1 A subgroup of the band 7 domain of flotillin (reggie) like proteins. This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic H
Probab=99.87 E-value=1.6e-21 Score=150.63 Aligned_cols=121 Identities=17% Similarity=0.306 Sum_probs=114.2
Q ss_pred EEEeeeeeeeeeecccCCCcceEEEEEEEEEeecCCCHhHHHHHhccccccccccchHHHHHHHHhhcCChhHHhh-chH
Q 023988 71 IFDIRTRPHTFSSVSGTKDLQMVNLTLRVLSRPEVSRLPYIFQHLGLEYDEKVLPSIGNEVLKAVVAQFNADQLLT-ERP 149 (274)
Q Consensus 71 ~~~~~~~~~~~~~~~~tkd~~~v~v~~~v~y~v~~~~~~~~~~~~g~~~~~~~i~~~~~~~lr~~~~~~~~~ei~~-~R~ 149 (274)
.+|++.++.+.+..+.|+||+++.++++++|++.+.++..+|.++|.++.+..|.+.+++++|+++++|+++++++ +|+
T Consensus 2 ~~~~r~~~~~~~~~v~T~D~~~v~vd~~v~y~V~~~~~~~~~~~~~~~~~~~~i~~~~~~~lR~~~~~~~~~e~i~~~R~ 81 (124)
T cd03400 2 EYSTRLQEVDEKIDVLSKEGLSINADVSVQYRINPNKAAAVHSKLGTDYARKIVRPTFRSLVREVTGRYTAEQIYSTKRK 81 (124)
T ss_pred cccceeeecccceEEECCCCCEEEEEEEEEEEEChhhHHHHHHHhCcchhheeechhHHHHHHHHhcCCCHHHHhhhhHH
Confidence 3688888888888899999999999999999999888888999998777888999999999999999999999997 799
Q ss_pred HHHHHHHHHHHHHhhcCCeEEEEEEEeeccCCHHHHHHHHHH
Q 023988 150 HVSALVRESLIKRARDFNIVLDDVAITHLSYGAEFSRAVEQK 191 (274)
Q Consensus 150 ~i~~~i~~~l~~~l~~~Gi~v~~v~I~~i~~p~~~~~ai~~k 191 (274)
+|++.+.+.+++.+++||++|.+|.|++++||++++++|++|
T Consensus 82 ~i~~~i~~~l~~~~~~~Gi~v~~v~i~~i~~P~~v~~aI~~k 123 (124)
T cd03400 82 EIESAIKKELIEEFVGDGLILEEVLLRNIKLPDQIADAIEAK 123 (124)
T ss_pred HHHHHHHHHHHHHhccCCeEEEEEEEecccCCHHHHHHHHhc
Confidence 999999999999999999999999999999999999999976
No 21
>cd03408 Band_7_5 A subgroup of the band 7 domain of flotillin (reggie) like proteins. This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic H
Probab=99.86 E-value=8.4e-21 Score=159.26 Aligned_cols=160 Identities=20% Similarity=0.204 Sum_probs=134.2
Q ss_pred hhccEEEecCCeEEEEEecccceeeceecCeeEEec----ccc---------------ceeEEEEeeeeeeee-------
Q 023988 28 LNSSLYTVDGGERAVLFDRFRGVIDETIGEGTHFLI----PWL---------------QKPFIFDIRTRPHTF------- 81 (274)
Q Consensus 28 ~~~~~~~V~~ge~gVv~~~~G~~~~~~~~pG~~~~~----P~~---------------~~v~~~~~~~~~~~~------- 81 (274)
..+|.++|++||.||++ ++|++.+ +++||.|+.+ |++ ..++.++.+.+....
T Consensus 12 ~~~s~~iV~e~~~av~~-~~Gk~~~-~~~~g~~~~~~~~~p~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 89 (207)
T cd03408 12 KNGSQLIVREGQAAVFV-NEGKVAD-VFAPGGYYLTTNNLPVLAFLLSGDKGFSSPFKGEVYFFNTRVFTDLLWGTPAPV 89 (207)
T ss_pred ccCCEEEEcCCcEEEEE-ECCEEEE-EecCCcceeeecCccHHHHhcChhhhCcCCceeEEEEEECEEEeccccCCCCCe
Confidence 46789999999999997 9999876 6777777655 443 236778877765531
Q ss_pred eecccCCCcceEEEEEEEEEeecCCCHhHHHHHhccc-------cccccccchHHHHHHHHhhcCChhHHhhc--hHHHH
Q 023988 82 SSVSGTKDLQMVNLTLRVLSRPEVSRLPYIFQHLGLE-------YDEKVLPSIGNEVLKAVVAQFNADQLLTE--RPHVS 152 (274)
Q Consensus 82 ~~~~~tkd~~~v~v~~~v~y~v~~~~~~~~~~~~g~~-------~~~~~i~~~~~~~lr~~~~~~~~~ei~~~--R~~i~ 152 (274)
.....|+|++++.+++.+.|++ .|+..++.+++.. ..+..+++.+++++|++++++++++++.+ |++|+
T Consensus 90 ~~~~~~~~~v~v~v~~~~~~kI--~Dp~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~lr~~i~~~~~~~l~~~~~r~~i~ 167 (207)
T cd03408 90 FGRDSEFGGVPLRAFGTYSLKV--TDPVLFVTNIVGTRGLFTVEDLEKSLRALIVAALSSALSESGLAVMLLAANRDELS 167 (207)
T ss_pred eeeCCccceEEEEeeEEEEEEE--cCHHHHHHHhcCCCcceeHHHHHHHHHHHHHHHHHHHHHhcCCeeEEhhhhHHHHH
Confidence 1235788999999999999998 5888999988532 35678999999999999999999999986 99999
Q ss_pred HHHHHHHHHHhhcCCeEEEEEEEeeccCCHHHHHHHHHH
Q 023988 153 ALVRESLIKRARDFNIVLDDVAITHLSYGAEFSRAVEQK 191 (274)
Q Consensus 153 ~~i~~~l~~~l~~~Gi~v~~v~I~~i~~p~~~~~ai~~k 191 (274)
+.+++.+++.+++||++|.++.|+++++|+++++++.++
T Consensus 168 ~~v~~~l~~~~~~~Gi~i~~v~I~~i~~p~e~~~ai~~r 206 (207)
T cd03408 168 KAVREALAPWFASFGLELVSVYIESISYPDEVQKLIDKR 206 (207)
T ss_pred HHHHHHHHHHHHhcCcEEEEEEEEeecCCHHHHHHHHhh
Confidence 999999999999999999999999999999999998864
No 22
>COG2268 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.82 E-value=9.2e-19 Score=161.12 Aligned_cols=166 Identities=18% Similarity=0.210 Sum_probs=137.2
Q ss_pred cEEEecCCeEEEEEec-c-c-----ceeeceecCeeEEeccccceeEEEEeeeeeeeee-ecccCCCcceEEEEEEEEEe
Q 023988 31 SLYTVDGGERAVLFDR-F-R-----GVIDETIGEGTHFLIPWLQKPFIFDIRTRPHTFS-SVSGTKDLQMVNLTLRVLSR 102 (274)
Q Consensus 31 ~~~~V~~ge~gVv~~~-~-G-----~~~~~~~~pG~~~~~P~~~~v~~~~~~~~~~~~~-~~~~tkd~~~v~v~~~v~y~ 102 (274)
.+|++.+...+++.+. | | +....++.+|+||++|++++..++|++..++++. ..+.|+||.++++++.++.+
T Consensus 33 ~~y~~a~~~~aLI~~g~~~g~~~~~g~~~~vV~gGg~~v~Pi~q~~~r~~l~~i~l~v~~~~v~t~Dg~p~~v~~~a~v~ 112 (548)
T COG2268 33 RFYIIARPNEALIRTGSKLGSKDEAGGGQKVVRGGGAIVMPIFQTIERMSLTTIKLEVEIDNVYTKDGMPLNVEAVAYVK 112 (548)
T ss_pred eeEEecCCCceEEEeccccCCcccccCCccEEecCceEEecceeeeEEeeeeeeeeeeeeeeeEecCCCccceeEEEEEE
Confidence 5665544444444322 1 1 3344689999999999999999999999999988 55899999999999999888
Q ss_pred ecC--CCHhHHHHHhccc----cccccccchHHHHHHHHhhcCChhHHhhchHHHHHHHHHHHHHHhhcCCeEEEEEEEe
Q 023988 103 PEV--SRLPYIFQHLGLE----YDEKVLPSIGNEVLKAVVAQFNADQLLTERPHVSALVRESLIKRARDFNIVLDDVAIT 176 (274)
Q Consensus 103 v~~--~~~~~~~~~~g~~----~~~~~i~~~~~~~lr~~~~~~~~~ei~~~R~~i~~~i~~~l~~~l~~~Gi~v~~v~I~ 176 (274)
+.+ .+...+..++|.. +....+...+.+++|.+++++|+.+++++|..|.+.+.+.+..+|.+.|+.++++.|.
T Consensus 113 i~~~~~dI~~aae~~g~Kg~~~~l~~~~~~~l~~~lR~i~a~~t~~el~edR~~F~~~V~~~v~~dL~k~Gl~l~s~~I~ 192 (548)
T COG2268 113 IGDTFQDIATAAERFGGKGSREDLEQLAEDTLEGALRAVLAQMTVEELNEDRLGFAQVVQEVVGDDLSKMGLVLDSLAIN 192 (548)
T ss_pred ecCCHHHHHHHHHHhccccCHHHHHHHHHHHHHHHHHHHHHhcCHHHHhhHHhhHHHHHHHHHHHHHHhcCeeeeeeeec
Confidence 864 3445566667744 5667788999999999999999999999999999999999999999999999999999
Q ss_pred eccCC-------HHHHHHHHHHHHHHH
Q 023988 177 HLSYG-------AEFSRAVEQKQVAQQ 196 (274)
Q Consensus 177 ~i~~p-------~~~~~ai~~k~~A~q 196 (274)
++..+ ..|.++...+.+++-
T Consensus 193 ~i~d~~~~~~d~~~yLda~G~r~i~qv 219 (548)
T COG2268 193 DINDTSKENQDPNNYLDALGRRRIAQV 219 (548)
T ss_pred ccccccccccChhhhhhhcChHHHHHH
Confidence 99999 899999987755554
No 23
>cd03399 Band_7_flotillin Band_7_flotillin: a subgroup of the band 7 domain of flotillin (reggie) like proteins. This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. These two proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and, interact with a variety of proteins. Flotillins may play a role in the progression of prion disease, in the pathogenesis of neurodegenerative diseases such as Parkinson's and Alzheimer's disease and, in cancer invasion and metastasis.
Probab=99.74 E-value=7.5e-18 Score=130.77 Aligned_cols=119 Identities=14% Similarity=0.170 Sum_probs=103.2
Q ss_pred EEeeeeeeeeeec-ccCCCcceEEEEEEEEEeecCCC--HhHHHHHhc---cccccccccchHHHHHHHHhhcCChhHHh
Q 023988 72 FDIRTRPHTFSSV-SGTKDLQMVNLTLRVLSRPEVSR--LPYIFQHLG---LEYDEKVLPSIGNEVLKAVVAQFNADQLL 145 (274)
Q Consensus 72 ~~~~~~~~~~~~~-~~tkd~~~v~v~~~v~y~v~~~~--~~~~~~~~g---~~~~~~~i~~~~~~~lr~~~~~~~~~ei~ 145 (274)
+|++.+.++++.+ +.|+|++++.++++++|||.+.. ...++.+++ .+..+..+.+.+++++|+++|+++++|++
T Consensus 2 ~~lr~~~~~~~~q~v~TkD~~~v~vd~~~~~rV~d~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~lR~~ig~~tl~el~ 81 (128)
T cd03399 2 LSLTSMVLRVGSEAVITRDGVRVDVTAVFQVKVGGTEEAIATAAERFLGKSEEEIEELVKEVLEGHLRAVVGTMTVEEIY 81 (128)
T ss_pred ccccceeeeccccceecCCCcEEEEEEEEEEEeCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhCCHHHHH
Confidence 5788889998875 89999999999999999996433 223334443 24578889999999999999999999999
Q ss_pred hchHHHHHHHHHHHHHHhhcCCeEEEEEEEeeccCCHHHHHHHHH
Q 023988 146 TERPHVSALVRESLIKRARDFNIVLDDVAITHLSYGAEFSRAVEQ 190 (274)
Q Consensus 146 ~~R~~i~~~i~~~l~~~l~~~Gi~v~~v~I~~i~~p~~~~~ai~~ 190 (274)
++|++|.+++.+.++..+++||++|.++.|++|++|++|.+++.+
T Consensus 82 ~~R~~i~~~i~~~v~~~~~~~Gi~i~~v~I~~i~~~~~~~~~~~~ 126 (128)
T cd03399 82 EDRDKFAEQVQEVVAPDLNKMGLELDSFTIKDITDTDGYLNNLGD 126 (128)
T ss_pred HhHHHHHHHHHHHHHHHHHHCCCEEEEEeeEEecCCCCCHHHcCC
Confidence 999999999999999999999999999999999999999888754
No 24
>KOG2668 consensus Flotillins [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=99.70 E-value=9.5e-16 Score=132.11 Aligned_cols=162 Identities=14% Similarity=0.135 Sum_probs=135.8
Q ss_pred EEEecCCeEEEEEecccceeeceecCeeEEeccccceeEEEEeeeeeeeeeec-ccCCCcceEEEEEEEEEeecCCCHhH
Q 023988 32 LYTVDGGERAVLFDRFRGVIDETIGEGTHFLIPWLQKPFIFDIRTRPHTFSSV-SGTKDLQMVNLTLRVLSRPEVSRLPY 110 (274)
Q Consensus 32 ~~~V~~ge~gVv~~~~G~~~~~~~~pG~~~~~P~~~~v~~~~~~~~~~~~~~~-~~tkd~~~v~v~~~v~y~v~~~~~~~ 110 (274)
|++..+.+..++ +.+|--.......| |+||| +++.++|+.+.++++..+ +.|+.|+|+.+...++..++.+++..
T Consensus 2 f~~~~~~~~l~i-tg~g~~~~~lv~~~--wvf~w-q~~q~~~ln~mtl~~~~e~v~tsegvP~~vtgVaqvki~~~~~~e 77 (428)
T KOG2668|consen 2 FKVAGASQYLAI-TGGGIEDIKLVKKS--WVFPW-QQCTVFDVSPMTLTFKVENVMTSEGVPFVVTGVAQVKIRVDDADE 77 (428)
T ss_pred CccCCccceEEe-ecccccCceecccc--eeeee-eeeeEEeecceeeeeecchhhcccCCceEeeeeEEEeeccCCHHH
Confidence 556678888887 56554333344445 55577 999999999999999998 89999999999999999998888655
Q ss_pred HHHH-----hc--cccccccccchHHHHHHHHhhcCChhHHhhchHHHHHHHHHHHHHHhhcCCeEEEEEEEeeccCCH-
Q 023988 111 IFQH-----LG--LEYDEKVLPSIGNEVLKAVVAQFNADQLLTERPHVSALVRESLIKRARDFNIVLDDVAITHLSYGA- 182 (274)
Q Consensus 111 ~~~~-----~g--~~~~~~~i~~~~~~~lr~~~~~~~~~ei~~~R~~i~~~i~~~l~~~l~~~Gi~v~~v~I~~i~~p~- 182 (274)
+.-. +| .+....++...+....|.+++++|++|+|.+|.+|...+++..+.++..+||.|.+.+|+|+...+
T Consensus 78 lL~~A~e~flgK~~~eIn~~vl~tlEGh~Rai~asmTvEEIyKdrk~F~k~Vfeva~~dl~~mGi~I~s~tiKdl~D~~g 157 (428)
T KOG2668|consen 78 LLLYACEQFLGKSSNEINELVLGTLEGHTRAILASMTVEEIYKDRKEFKKEVFEVAQLDLGQMGIVIYSATIKDLVDVPG 157 (428)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHhhhHHHHHHHhccHHHHHhhHHHHHHHHHHHhhhhhhhcceEEEEeEhhhhhcccc
Confidence 5443 24 355677788999999999999999999999999999999999999999999999999999998888
Q ss_pred -HHHHHHHHHHHHHHH
Q 023988 183 -EFSRAVEQKQVAQQE 197 (274)
Q Consensus 183 -~~~~ai~~k~~A~qe 197 (274)
+|..++.+++.|+..
T Consensus 158 ~~YlssLGka~taev~ 173 (428)
T KOG2668|consen 158 HEYLSSLGKATTAEVA 173 (428)
T ss_pred hHHHHHhhhHHHHHHH
Confidence 699999988777653
No 25
>cd02106 Band_7 The band 7 domain of flotillin (reggie) like proteins. This group contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic HflK/C plays a role i
Probab=99.62 E-value=4.7e-15 Score=112.90 Aligned_cols=107 Identities=25% Similarity=0.306 Sum_probs=94.4
Q ss_pred ecccCCCcceEEEEEEEEEeecCCCHhHHHHHhccccccccccchHHHHHHHHhhcCChhHHhhchHHHHHHHHHHHHHH
Q 023988 83 SVSGTKDLQMVNLTLRVLSRPEVSRLPYIFQHLGLEYDEKVLPSIGNEVLKAVVAQFNADQLLTERPHVSALVRESLIKR 162 (274)
Q Consensus 83 ~~~~tkd~~~v~v~~~v~y~v~~~~~~~~~~~~g~~~~~~~i~~~~~~~lr~~~~~~~~~ei~~~R~~i~~~i~~~l~~~ 162 (274)
..+.|+|++++.+++++.|++.+.. ..++...+.++ ...+.+.+.+++|+++++++++++.++|++|++.+++.+...
T Consensus 14 ~~~~t~d~~~i~~~~~~~~~v~~~~-~~~~~~~~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~i~~~v~~~l~~~ 91 (121)
T cd02106 14 QEVLTKDNVPVRVDAVVQYRVVDPV-KALYNVRDPED-EEALRQLAQSALRSVIGKMTLDELLEDRDEIAAEVREALQED 91 (121)
T ss_pred ceEEecCCCEEEEEEEEEEEEeCHH-HHHHhcCCccH-HHHHHHHHHHHHHHHHccccHHHHHhhHHHHHHHHHHHHHHH
Confidence 3478999999999999999997432 34544433333 678999999999999999999999999999999999999999
Q ss_pred hhcCCeEEEEEEEeeccCCHHHHHHHHHH
Q 023988 163 ARDFNIVLDDVAITHLSYGAEFSRAVEQK 191 (274)
Q Consensus 163 l~~~Gi~v~~v~I~~i~~p~~~~~ai~~k 191 (274)
+++||++|.+|.|+++++|+++.++++++
T Consensus 92 ~~~~Gi~i~~v~i~~i~~~~~~~~ai~~~ 120 (121)
T cd02106 92 LDKYGIEVVDVRIKDIDPPEEVQEAMEDR 120 (121)
T ss_pred HHhcCCEEEEEEEEecCCCHHHHHHHHhh
Confidence 99999999999999999999999999875
No 26
>PF13421 Band_7_1: SPFH domain-Band 7 family
Probab=99.47 E-value=2.7e-12 Score=107.48 Aligned_cols=161 Identities=18% Similarity=0.225 Sum_probs=127.4
Q ss_pred hccEEEecCCeEEEEEecccceeeceecCeeEEe-------------------ccccceeEEEEeeeee-eeeee----c
Q 023988 29 NSSLYTVDGGERAVLFDRFRGVIDETIGEGTHFL-------------------IPWLQKPFIFDIRTRP-HTFSS----V 84 (274)
Q Consensus 29 ~~~~~~V~~ge~gVv~~~~G~~~~~~~~pG~~~~-------------------~P~~~~v~~~~~~~~~-~~~~~----~ 84 (274)
..|-.+|++||.+|++ .-|++.+ +.+||.|-. .||-..|+-++++... ..+.. .
T Consensus 13 ~GS~LiV~egQ~Avfv-~~G~i~d-~~~pG~y~l~T~n~P~l~~l~~~~~Gg~spf~~eVyFvn~~~~~~~kwGT~~pi~ 90 (211)
T PF13421_consen 13 NGSQLIVREGQCAVFV-NDGKIAD-VFGPGRYTLDTDNIPILSTLKNWKFGGESPFKAEVYFVNTKEITNIKWGTPNPIP 90 (211)
T ss_pred CCCEEEECCCCEEEEE-ECCEEEE-EecCceEEEecCCchHHHHHhhhccCCCCCceEEEEEEECeEecCCccCCCCCee
Confidence 4677899999999997 8899887 899999963 3555567777777653 23221 1
Q ss_pred ccCCCcceEEEEEEEEEeecCCCHhHHHHHh-c------cccccccccchHHHHHHHHhh--cCChhHHhhchHHHHHHH
Q 023988 85 SGTKDLQMVNLTLRVLSRPEVSRLPYIFQHL-G------LEYDEKVLPSIGNEVLKAVVA--QFNADQLLTERPHVSALV 155 (274)
Q Consensus 85 ~~tkd~~~v~v~~~v~y~v~~~~~~~~~~~~-g------~~~~~~~i~~~~~~~lr~~~~--~~~~~ei~~~R~~i~~~i 155 (274)
....+-..|.+.+...|.++..|+..|++++ | .+..+..+++.+.+.+.+.++ ++++.++-++-.+|++.+
T Consensus 91 ~~D~~~~~v~lra~G~ys~rI~Dp~~F~~~~vg~~~~~~~~~i~~~l~~~i~~~i~~~l~~~~~~~~~i~a~~~eis~~~ 170 (211)
T PF13421_consen 91 YRDPEYGPVRLRAFGTYSFRIVDPVLFIRNLVGTQSEFTTEEINEQLRSEIVQAIADALAESKISILDIPAHLDEISEAL 170 (211)
T ss_pred ecCCCCCcEEEEEEEEEEEEEeCHHHHHHhhCCCCCcccHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 3344433777777778888778999999986 3 233456677777777777777 479999999999999999
Q ss_pred HHHHHHHhhcCCeEEEEEEEeeccCCHHHHHHHHHH
Q 023988 156 RESLIKRARDFNIVLDDVAITHLSYGAEFSRAVEQK 191 (274)
Q Consensus 156 ~~~l~~~l~~~Gi~v~~v~I~~i~~p~~~~~ai~~k 191 (274)
++.++..++.+|+++.++.|.+|++|++.++.+.++
T Consensus 171 ~~~l~~~~~~~Gi~l~~f~I~~i~~pee~~~~i~~~ 206 (211)
T PF13421_consen 171 KEKLNPEFERYGIELVDFGIESISFPEEVQKAIDKR 206 (211)
T ss_pred HHHHHHHHHhcCcEEEEEEEEeecCCHHHHHHHHHH
Confidence 999999999999999999999999999999999864
No 27
>COG4260 Membrane protease subunit, stomatin/prohibitin family [Amino acid transport and metabolism]
Probab=98.78 E-value=2.5e-07 Score=78.54 Aligned_cols=161 Identities=14% Similarity=0.083 Sum_probs=119.0
Q ss_pred hccEEEecCCeEEEEEecccceeeceecCeeEE-------------------eccccceeEEEEeeeee-eeeee----c
Q 023988 29 NSSLYTVDGGERAVLFDRFRGVIDETIGEGTHF-------------------LIPWLQKPFIFDIRTRP-HTFSS----V 84 (274)
Q Consensus 29 ~~~~~~V~~ge~gVv~~~~G~~~~~~~~pG~~~-------------------~~P~~~~v~~~~~~~~~-~~~~~----~ 84 (274)
-.|...|.|++-++.+ .-|++.+..-++|.|- ..|+-+.|+.++++.+. +.+.. +
T Consensus 38 nGs~l~Vrp~qmamfv-n~G~I~dvf~e~G~y~v~~~t~P~L~tlk~~kfgf~sp~k~eVyfvntqe~~girwGT~qpin 116 (345)
T COG4260 38 NGSILHVRPNQMAMFV-NGGQIADVFAEAGYYKVTTQTLPSLFTLKRFKFGFESPFKQEVYFVNTQEIKGIRWGTPQPIN 116 (345)
T ss_pred cCcEEEEecCceEEEE-cCCEEEeeecCCceeEeeecccchhhhhhcceecCCCcccceEEEEecceecceecCCCCCee
Confidence 4567889999999986 6677776555588762 24666778888887766 44432 2
Q ss_pred ccC-CCcceEEEEEEEEEeecCCCHhHHHHHhc-------cccccccccchHHHHHHHHhhcC--ChhHHhhchHHHHHH
Q 023988 85 SGT-KDLQMVNLTLRVLSRPEVSRLPYIFQHLG-------LEYDEKVLPSIGNEVLKAVVAQF--NADQLLTERPHVSAL 154 (274)
Q Consensus 85 ~~t-kd~~~v~v~~~v~y~v~~~~~~~~~~~~g-------~~~~~~~i~~~~~~~lr~~~~~~--~~~ei~~~R~~i~~~ 154 (274)
... .++-.+-+.+.-.|.+...|+..++..+. .++.+..+-+.+..++...+.++ .+..+-++--+++..
T Consensus 117 ~~dn~~~g~l~lRa~Gtys~kvtDpi~fi~~I~g~~dvy~v~di~~q~ls~~m~al~tai~q~G~~~~~ltan~~elsk~ 196 (345)
T COG4260 117 YFDNFYNGELFLRAHGTYSIKVTDPILFIQQIPGNRDVYTVDDINQQYLSEFMGALATAINQSGVRFSFLTANQMELSKY 196 (345)
T ss_pred cccccccceeEEeecceEEEEecCHHHHHHhccCCCceEEHHHHHHHHHHHHHHHHHHHHHhcCceehhhhhhHHHHHHH
Confidence 333 45445555555556666678888988864 23455666777788888877765 444555678899999
Q ss_pred HHHHHHHHhhcCCeEEEEEEEeeccCCHHHHHHHHH
Q 023988 155 VRESLIKRARDFNIVLDDVAITHLSYGAEFSRAVEQ 190 (274)
Q Consensus 155 i~~~l~~~l~~~Gi~v~~v~I~~i~~p~~~~~ai~~ 190 (274)
+++.|.+++..+|+.|++|+|-.|++|++.++.|..
T Consensus 197 m~e~Ld~q~~q~Gm~v~sfqvaSisypde~Q~lin~ 232 (345)
T COG4260 197 MAEVLDEQWTQYGMAVDSFQVASISYPDESQALINM 232 (345)
T ss_pred HHHHHhHHHHhhCceEeeEEEEEecCcHHHHHHHHh
Confidence 999999999999999999999999999999999974
No 28
>PTZ00491 major vault protein; Provisional
Probab=97.82 E-value=0.0023 Score=62.78 Aligned_cols=156 Identities=14% Similarity=0.031 Sum_probs=98.9
Q ss_pred EEecCCeEEEEEecccceeeceecCeeEEeccccceeEEEEeeee------eee-----e-------eecccCCCcceEE
Q 023988 33 YTVDGGERAVLFDRFRGVIDETIGEGTHFLIPWLQKPFIFDIRTR------PHT-----F-------SSVSGTKDLQMVN 94 (274)
Q Consensus 33 ~~V~~ge~gVv~~~~G~~~~~~~~pG~~~~~P~~~~v~~~~~~~~------~~~-----~-------~~~~~tkd~~~v~ 94 (274)
+.||-+...-+|+.--+....+.+|-+++.-|- +.+..+++..- .+. . -..+-|+|...+.
T Consensus 465 ~~vphn~avqvydyk~~~~Rvv~GP~~v~L~pd-E~ftvlsLSgg~PK~~n~i~~l~l~lGPdf~tD~i~vET~DhArL~ 543 (850)
T PTZ00491 465 YKVPHNAAVQLYDYKTKKSRVVFGPDLVMLEPD-EEFTVLSLSGGKPKVPNQIHSLHLFLGPDFMTDVIHVETSDHARLA 543 (850)
T ss_pred EEcCCCcEEEEEEcccCceEEEECCceEEecCC-CceEEEEecCCCCCCcchhhhhhhhhCCccceeEEEEEEcccceEE
Confidence 567777766665433333456899999999997 56666554321 111 0 1236799998888
Q ss_pred EEEEEEEeec--CCCHhHHHHHhccccccccccchHHHHHHHHhhcCChhHHhhchH-HHHHHHHHHHHH--------Hh
Q 023988 95 LTLRVLSRPE--VSRLPYIFQHLGLEYDEKVLPSIGNEVLKAVVAQFNADQLLTERP-HVSALVRESLIK--------RA 163 (274)
Q Consensus 95 v~~~v~y~v~--~~~~~~~~~~~g~~~~~~~i~~~~~~~lr~~~~~~~~~ei~~~R~-~i~~~i~~~l~~--------~l 163 (274)
+..+.+|... ++|+...-.-|...++-..+-..+.+.+|..++..+++++..+-. -|.+.+.....+ .+
T Consensus 544 l~LsYnW~F~v~~~d~~~~~k~Fsv~DFvGd~Ck~iaSrIR~aVA~~~Fd~FHknsa~iiR~aVFg~~~e~~~~r~~l~F 623 (850)
T PTZ00491 544 LQLSYNWYFDVTDGNPEDAQKCFSVPDFVGDACKTIASRVRAAVASEPFDEFHKNSAKIIRQAVFGSNDETGEVRDSLRF 623 (850)
T ss_pred EEEEEEEEEecCCCChhhHhheeccCchHHHHHHHHHHHHHHHHhcCCHHHHhccHHHHHHHHhccCcCCCCccccceEE
Confidence 8877776654 445532222233333333366788999999999999999997533 344444442222 23
Q ss_pred hcCCeEEEEEEEeeccCCHH-HHHHHH
Q 023988 164 RDFNIVLDDVAITHLSYGAE-FSRAVE 189 (274)
Q Consensus 164 ~~~Gi~v~~v~I~~i~~p~~-~~~ai~ 189 (274)
...|+.|.+|.|+++.+-+. .+++++
T Consensus 624 ~~N~lvit~VDvqsvEpvD~~tr~~Lq 650 (850)
T PTZ00491 624 PANNLVITNVDVQSVEPVDERTRDSLQ 650 (850)
T ss_pred ccCCeEEEEEeeeeeeecCHHHHHHHH
Confidence 56689999999999987654 555553
No 29
>PF12127 YdfA_immunity: SigmaW regulon antibacterial; InterPro: IPR022853 This entry represents the uncharacterised protein family UPF0365. Its function is not known. The proteins in this family are found in bacteria. They are about 330 amino acids in length and encoded by a gene located in an operon which confers immunity for the host species to a broad range of antibacterial compounds, unlike the specific immunity proteins that are linked to and co-regulated with their antibiotic-synthesis proteins.
Probab=97.44 E-value=0.0019 Score=55.18 Aligned_cols=107 Identities=18% Similarity=0.291 Sum_probs=78.3
Q ss_pred ccCCCcceEEEEEEEEEeecCCCHhHHHHHhccccccccccchHHHHHHHHhhcCChhHHhhchHHHHHHHHHHHHHHhh
Q 023988 85 SGTKDLQMVNLTLRVLSRPEVSRLPYIFQHLGLEYDEKVLPSIGNEVLKAVVAQFNADQLLTERPHVSALVRESLIKRAR 164 (274)
Q Consensus 85 ~~tkd~~~v~v~~~v~y~v~~~~~~~~~~~~g~~~~~~~i~~~~~~~lr~~~~~~~~~ei~~~R~~i~~~i~~~l~~~l~ 164 (274)
...|||..+.+.+.+..|-+ ...+ +|....++.+-..-+..+..+-|.-+-.+++.+.+.|++.+.+. -|+
T Consensus 134 aVAkdGIql~~kArVTVRaN---i~rL---VGGAgEeTIiARVGEgIVttiGSa~~hk~VLEnPd~ISk~VL~k---gLD 204 (316)
T PF12127_consen 134 AVAKDGIQLKVKARVTVRAN---IDRL---VGGAGEETIIARVGEGIVTTIGSAESHKEVLENPDSISKTVLEK---GLD 204 (316)
T ss_pred hhhcCCeEEEEEEEEEEEec---HHHh---ccCCCcHHHHHHHccceeeeeccchhHHHHhcCHHHHHHHHHhh---CCC
Confidence 46899999999988877753 4344 56666677777777777777777788899999999999877654 344
Q ss_pred c-CCeEEEEEEEeeccCCHHHHHHHH------HHHHHHHHHHH
Q 023988 165 D-FNIVLDDVAITHLSYGAEFSRAVE------QKQVAQQEAER 200 (274)
Q Consensus 165 ~-~Gi~v~~v~I~~i~~p~~~~~ai~------~k~~A~qeae~ 200 (274)
. --+++.|+.|-|++.-+.+-..++ +|..||.+||.
T Consensus 205 agTAFeIlSIDIaDidVG~NIGA~Lq~dQAeADk~iAqAkAEe 247 (316)
T PF12127_consen 205 AGTAFEILSIDIADIDVGENIGAKLQTDQAEADKRIAQAKAEE 247 (316)
T ss_pred cCceeEEEEeeeeccccchhhchhhhHHHHHHHHHHHHHHHHH
Confidence 2 358999999999999987655443 45555555544
No 30
>PRK13665 hypothetical protein; Provisional
Probab=97.25 E-value=0.0039 Score=53.04 Aligned_cols=107 Identities=19% Similarity=0.272 Sum_probs=78.2
Q ss_pred ccCCCcceEEEEEEEEEeecCCCHhHHHHHhccccccccccchHHHHHHHHhhcCChhHHhhchHHHHHHHHHHHHHHhh
Q 023988 85 SGTKDLQMVNLTLRVLSRPEVSRLPYIFQHLGLEYDEKVLPSIGNEVLKAVVAQFNADQLLTERPHVSALVRESLIKRAR 164 (274)
Q Consensus 85 ~~tkd~~~v~v~~~v~y~v~~~~~~~~~~~~g~~~~~~~i~~~~~~~lr~~~~~~~~~ei~~~R~~i~~~i~~~l~~~l~ 164 (274)
...|||..+.+.+.+..|- +...+ +|..-.++.+-..-+..+..+-|.-+-.+++.+.+.|++.+. .+-|+
T Consensus 139 aVAkdGIql~~kARVTVRa---Ni~rL---VGGAgEeTIiARVGEgIVttIGSa~~hk~VLEnPd~ISk~VL---~kGLD 209 (316)
T PRK13665 139 AVAKDGIEVKAKARVTVRA---NIDRL---VGGAGEETIIARVGEGIVSTIGSSESHKEVLENPDSISKTVL---SKGLD 209 (316)
T ss_pred hhcccCeEEEEEEEEEeeh---hHHHH---hCCCcceeeEeeecCceeecccCcchHHHHhcCHHHHHHHHH---hccCC
Confidence 4689999999988877663 34444 566666777777777777777788888999999999986554 34454
Q ss_pred c-CCeEEEEEEEeeccCCHHHHHHHH------HHHHHHHHHHH
Q 023988 165 D-FNIVLDDVAITHLSYGAEFSRAVE------QKQVAQQEAER 200 (274)
Q Consensus 165 ~-~Gi~v~~v~I~~i~~p~~~~~ai~------~k~~A~qeae~ 200 (274)
. --+++.|+.|-|++.-+.+-..++ +|..||.+||.
T Consensus 210 agTAFeIlSIDIADvdVG~NIGA~Lq~dQAEADk~iAqAkAEe 252 (316)
T PRK13665 210 AGTAFEILSIDIADVDVGKNIGAKLQTDQAEADKRIAQAKAEE 252 (316)
T ss_pred cCceeEEEEEeeeccccchhhchhhhHHHHHHHHHHHHHHHHH
Confidence 3 258999999999999988755443 45556655553
No 31
>COG1580 FliL Flagellar basal body-associated protein [Cell motility and secretion]
Probab=96.26 E-value=0.2 Score=40.07 Aligned_cols=80 Identities=13% Similarity=0.103 Sum_probs=61.5
Q ss_pred cceEEEEEEEEEeecCCCHhHHHHHhccccccccccchHHHHHHHHhhcCChhHHhh--chHHHHHHHHHHHHHHhhcCC
Q 023988 90 LQMVNLTLRVLSRPEVSRLPYIFQHLGLEYDEKVLPSIGNEVLKAVVAQFNADQLLT--ERPHVSALVRESLIKRARDFN 167 (274)
Q Consensus 90 ~~~v~v~~~v~y~v~~~~~~~~~~~~g~~~~~~~i~~~~~~~lr~~~~~~~~~ei~~--~R~~i~~~i~~~l~~~l~~~G 167 (274)
+-...+.+.+.|++.......-... =.+.+++.+...+++.+.+|+.+ .++++..++++.++..+..-+
T Consensus 76 ~~~~~v~i~i~l~~~n~~~~~el~~---------~~p~vrd~li~lfsskt~~eL~t~~Gke~Lk~ei~~~in~~L~~g~ 146 (159)
T COG1580 76 PKDRYVKIAITLEVANKALLEELEE---------KKPEVRDALLMLFSSKTAAELSTPEGKEKLKAEIKDRINTILKEGQ 146 (159)
T ss_pred CCcEEEEEEEEEeeCCHHHHHHHHH---------hhHHHHHHHHHHHHhCCHHHhcCchhHHHHHHHHHHHHHHHHhcCC
Confidence 4456677777888864332222221 24789999999999999999998 699999999999999998765
Q ss_pred eEEEEEEEeecc
Q 023988 168 IVLDDVAITHLS 179 (274)
Q Consensus 168 i~v~~v~I~~i~ 179 (274)
.|.+|.++++.
T Consensus 147 -~V~dV~fT~fi 157 (159)
T COG1580 147 -VVKDVLFTNFI 157 (159)
T ss_pred -eeEEEeeehhh
Confidence 88888887754
No 32
>PRK06654 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=94.90 E-value=0.97 Score=36.78 Aligned_cols=77 Identities=13% Similarity=0.196 Sum_probs=54.7
Q ss_pred ceEEEEEEEEEeecCCCHhHHHHHhccccccccccchHHHHHHHHhhcCChhHHhhchHHHHHHHHHHHHHHhhcCCeEE
Q 023988 91 QMVNLTLRVLSRPEVSRLPYIFQHLGLEYDEKVLPSIGNEVLKAVVAQFNADQLLTERPHVSALVRESLIKRARDFNIVL 170 (274)
Q Consensus 91 ~~v~v~~~v~y~v~~~~~~~~~~~~g~~~~~~~i~~~~~~~lr~~~~~~~~~ei~~~R~~i~~~i~~~l~~~l~~~Gi~v 170 (274)
....+.+++.|... +. .+..++ +. =.+.+++.+...+++.+.+|+. .++++.+++.+++|..|.+- .|
T Consensus 101 ~r~~vki~l~~e~~--d~-~l~~EL-----~~-r~pqIRD~Ii~~LssKt~~eL~-Gk~~LKeEI~~rIN~iL~~G--kV 168 (181)
T PRK06654 101 KTFVVKLALGYAEN--NK-NILNEL-----GR-RKVRLKDIIREYFSQKTGQELK-NESQIKAEIKARINSILRNG--EI 168 (181)
T ss_pred ceEEEEEEEEEEcC--CH-HHHHHH-----Hh-ccHHHHHHHHHHHHhCCHHHHc-CHHHHHHHHHHHHHHhcCCC--ce
Confidence 34446666666653 22 232221 22 2478999999999999999999 88999999999999988864 46
Q ss_pred EEEEEeecc
Q 023988 171 DDVAITHLS 179 (274)
Q Consensus 171 ~~v~I~~i~ 179 (274)
.+|.+++..
T Consensus 169 ~~VYFTeFv 177 (181)
T PRK06654 169 KDIAFTQID 177 (181)
T ss_pred EEEEEEEEE
Confidence 666666543
No 33
>PRK12785 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=94.69 E-value=1.4 Score=35.46 Aligned_cols=52 Identities=4% Similarity=-0.012 Sum_probs=44.3
Q ss_pred cchHHHHHHHHhhcCChhHHhh--chHHHHHHHHHHHHHHhhcCCeEEEEEEEeec
Q 023988 125 PSIGNEVLKAVVAQFNADQLLT--ERPHVSALVRESLIKRARDFNIVLDDVAITHL 178 (274)
Q Consensus 125 ~~~~~~~lr~~~~~~~~~ei~~--~R~~i~~~i~~~l~~~l~~~Gi~v~~v~I~~i 178 (274)
.+.+++.+-..+++.+.+|+.+ .++.+.+++.+.++..+.+- .|.+|.++++
T Consensus 110 ~p~Ird~i~~~Ls~~~~~~L~~~~Gk~~Lr~ei~~~in~~l~~~--~V~~VlFt~F 163 (166)
T PRK12785 110 MPRVTDAFQTYLRELRPSDLNGSAGLFRLKEELLRRVNVALAPA--QVNAVLFKEV 163 (166)
T ss_pred chHHHHHHHHHHHhCCHHHhcChHHHHHHHHHHHHHHHhhcCCC--ceeEEEEEee
Confidence 4788999999999999999987 69999999999999988763 4777777764
No 34
>COG4864 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.61 E-value=0.54 Score=39.24 Aligned_cols=106 Identities=19% Similarity=0.264 Sum_probs=67.2
Q ss_pred cCCCcceEEEEEEEEEeecCCCHhHHHHHhccccccccccchHHHHHHHHhhcCChhHHhhchHHHHHHHHHHHHHHhhc
Q 023988 86 GTKDLQMVNLTLRVLSRPEVSRLPYIFQHLGLEYDEKVLPSIGNEVLKAVVAQFNADQLLTERPHVSALVRESLIKRARD 165 (274)
Q Consensus 86 ~tkd~~~v~v~~~v~y~v~~~~~~~~~~~~g~~~~~~~i~~~~~~~lr~~~~~~~~~ei~~~R~~i~~~i~~~l~~~l~~ 165 (274)
..-||..+...+.+..| .+..++ +|..-.++.+...-+..+..+-++..-.+++.+.+.|++.+.+ +-|+.
T Consensus 139 vam~gievkakaritvr---ani~rl---vggageetviarvgegivstigss~~h~~vlenpd~isktvl~---kgld~ 209 (328)
T COG4864 139 VAMNGIEVKAKARITVR---ANIERL---VGGAGEETVIARVGEGIVSTIGSSDEHTKVLENPDSISKTVLE---KGLDS 209 (328)
T ss_pred eeccceEEEEEEEEEeh---hhHHHH---hCCCCchhhhhhhccceeeccCCCcchhhHhcCccHHHHHHHH---ccCCC
Confidence 45678777776655544 333344 4555555656555555555566667778888888888876644 23432
Q ss_pred -CCeEEEEEEEeeccCCHHHH------HHHHHHHHHHHHHHH
Q 023988 166 -FNIVLDDVAITHLSYGAEFS------RAVEQKQVAQQEAER 200 (274)
Q Consensus 166 -~Gi~v~~v~I~~i~~p~~~~------~ai~~k~~A~qeae~ 200 (274)
..+++.++.|-|++..+.+- ++-.+|..||..++.
T Consensus 210 gtafeilsidiadvdigkniga~lqteqa~adk~iaqakaee 251 (328)
T COG4864 210 GTAFEILSIDIADVDIGKNIGAKLQTEQAEADKNIAQAKAEE 251 (328)
T ss_pred CceeEEEEeeeeccccccccccccchhhhhhhhHHHHHHHHH
Confidence 24789999999988887653 444456666665543
No 35
>PF03748 FliL: Flagellar basal body-associated protein FliL; InterPro: IPR005503 This FliL protein controls the rotational direction of the flagella during chemotaxis []. FliL is a cytoplasmic membrane protein associated with the basal body [].; GO: 0001539 ciliary or flagellar motility, 0006935 chemotaxis, 0009425 bacterial-type flagellum basal body
Probab=91.54 E-value=3.7 Score=29.56 Aligned_cols=52 Identities=12% Similarity=0.105 Sum_probs=44.5
Q ss_pred cchHHHHHHHHhhcCChhHHhh--chHHHHHHHHHHHHHHhhcCCeEEEEEEEeec
Q 023988 125 PSIGNEVLKAVVAQFNADQLLT--ERPHVSALVRESLIKRARDFNIVLDDVAITHL 178 (274)
Q Consensus 125 ~~~~~~~lr~~~~~~~~~ei~~--~R~~i~~~i~~~l~~~l~~~Gi~v~~v~I~~i 178 (274)
.+.+++.+...+++++.+++.+ .++.+.+++.+.+++.+.+- .|.+|.++++
T Consensus 43 ~~~ird~ii~~l~~~~~~~l~~~~g~~~Lk~~l~~~in~~l~~~--~V~~V~ft~f 96 (99)
T PF03748_consen 43 MPRIRDAIISYLSSKTAEDLSGPEGKERLKDELKDRINKILGKG--KVKDVYFTDF 96 (99)
T ss_pred cHHHHHHHHHHHHcCCHHHhcChhhHHHHHHHHHHHHHHhhccC--cEEEEEEEEE
Confidence 4689999999999999999996 69999999999999999654 4777777764
No 36
>PF11978 MVP_shoulder: Shoulder domain; InterPro: IPR021870 This domain is found in the Major Vault Protein and has been called the shoulder domain []. This family includes two bacterial proteins A6FXE2 from SWISSPROT and A1ZGE7 from SWISSPROT. This suggests that some bacteria may possess vault particles. ; PDB: 2ZUO_G 2QZV_B 2ZV5_c 2ZV4_Y.
Probab=89.71 E-value=1.3 Score=33.28 Aligned_cols=95 Identities=13% Similarity=0.064 Sum_probs=58.8
Q ss_pred ccCCCcceEEEEEEEEEeecC--CCHhHHHHHhc-cccccccccchHHHHHHHHhhcCChhHHhhchHHHHHHHH-----
Q 023988 85 SGTKDLQMVNLTLRVLSRPEV--SRLPYIFQHLG-LEYDEKVLPSIGNEVLKAVVAQFNADQLLTERPHVSALVR----- 156 (274)
Q Consensus 85 ~~tkd~~~v~v~~~v~y~v~~--~~~~~~~~~~g-~~~~~~~i~~~~~~~lr~~~~~~~~~ei~~~R~~i~~~i~----- 156 (274)
+-|+|-..+.+..+..|.... .++..--+-|+ +++. ..+-..+.+.+|..++..+.+++..+-..|-....
T Consensus 11 VET~DhArL~L~LsYnw~F~v~~~~~~~~~k~F~VpDFV-Gd~Ck~iaSRIR~aVa~~~Fd~FHknSa~iiR~aVFg~~~ 89 (118)
T PF11978_consen 11 VETADHARLQLQLSYNWHFDVDRKDPEDAAKLFSVPDFV-GDACKAIASRIRGAVASVTFDDFHKNSARIIRQAVFGFDE 89 (118)
T ss_dssp EE-TT-EEEEEEEEEEEEE--TTTHHHHHHHTTSSTTHH-HHHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHSTS--
T ss_pred EeecccceeeEEEEEEEEEecCCCChhHHHHhcCCcchH-HHHHHHHHHHHHHHHhcCcHHHHcccHHHHHHHHhcCCCC
Confidence 568898888888777666543 33433334345 3443 33567888999999999999999975433322211
Q ss_pred -HHHHH--HhhcCCeEEEEEEEeeccC
Q 023988 157 -ESLIK--RARDFNIVLDDVAITHLSY 180 (274)
Q Consensus 157 -~~l~~--~l~~~Gi~v~~v~I~~i~~ 180 (274)
...+. .+..-|+.|.+|.|+++.|
T Consensus 90 ~~~~r~~~~F~~N~LvIt~vDvqsvEp 116 (118)
T PF11978_consen 90 NGEVRDGLRFPANNLVITSVDVQSVEP 116 (118)
T ss_dssp -E--SS-EEETTTTEEEEEEEEEEEEE
T ss_pred CCCccceeEEcCCCeEEEEEeeeEecc
Confidence 11111 2346699999999998875
No 37
>PRK07718 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=88.27 E-value=5.4 Score=31.18 Aligned_cols=52 Identities=13% Similarity=0.192 Sum_probs=44.5
Q ss_pred cchHHHHHHHHhhcCChhHHhh--chHHHHHHHHHHHHHHhhcCCeEEEEEEEeec
Q 023988 125 PSIGNEVLKAVVAQFNADQLLT--ERPHVSALVRESLIKRARDFNIVLDDVAITHL 178 (274)
Q Consensus 125 ~~~~~~~lr~~~~~~~~~ei~~--~R~~i~~~i~~~l~~~l~~~Gi~v~~v~I~~i 178 (274)
.+.+++.+-..+++.+.+|+.+ .|+.+.+++.+.++..+.+ | .|.+|.+++.
T Consensus 86 ~p~Ird~ii~~L~~~~~~~l~~~~G~~~Lr~el~~~in~~l~~-g-~V~~Vyft~f 139 (142)
T PRK07718 86 DFQVKNIIIEELADMNAEDFKGKKGLEALKEQLKEKINNLMQE-G-KVEKVYITSF 139 (142)
T ss_pred ChhhHHHHHHHHHcCCHHHhcChhHHHHHHHHHHHHHHHhhcc-C-ceEEEEEEee
Confidence 4689999999999999999997 6999999999999998876 4 5777777654
No 38
>PRK05697 flagellar basal body-associated protein FliL-like protein; Validated
Probab=86.06 E-value=12 Score=29.03 Aligned_cols=54 Identities=11% Similarity=0.118 Sum_probs=45.3
Q ss_pred cchHHHHHHHHhhcCChhHHhh--chHHHHHHHHHHHHHHhhcC-C-eEEEEEEEeec
Q 023988 125 PSIGNEVLKAVVAQFNADQLLT--ERPHVSALVRESLIKRARDF-N-IVLDDVAITHL 178 (274)
Q Consensus 125 ~~~~~~~lr~~~~~~~~~ei~~--~R~~i~~~i~~~l~~~l~~~-G-i~v~~v~I~~i 178 (274)
.+.+++.+-..+++.+.+|+.+ .|+.+.+++.++++..+.+- | -.|++|.+++.
T Consensus 77 ~P~IRd~ii~lLs~~t~~eL~t~eGke~Lr~eil~~in~~L~~~~g~~~V~~VlFT~F 134 (137)
T PRK05697 77 DPLIRNALVELLGQQTEDKVKSLTGREEIRQECLKQVNELLEQETGKPLVVDLLFTKY 134 (137)
T ss_pred CHHHHHHHHHHHHcCCHHHhcCHHHHHHHHHHHHHHHHHHHhhccCCCceeEEeeeee
Confidence 3789999999999999999987 79999999999999999743 2 25777777664
No 39
>PRK07021 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=84.32 E-value=14 Score=29.49 Aligned_cols=54 Identities=19% Similarity=0.172 Sum_probs=44.6
Q ss_pred cchHHHHHHHHhhcCChhHHhh--chHHHHHHHHHHHHHHhhcCC--eEEEEEEEeec
Q 023988 125 PSIGNEVLKAVVAQFNADQLLT--ERPHVSALVRESLIKRARDFN--IVLDDVAITHL 178 (274)
Q Consensus 125 ~~~~~~~lr~~~~~~~~~ei~~--~R~~i~~~i~~~l~~~l~~~G--i~v~~v~I~~i 178 (274)
.+.+++.+-..+++.+.+|+.+ .++.+.+++.+.++..+..-+ -.|.+|.++++
T Consensus 102 ~p~IRd~ii~~Ls~k~~~~L~~~eGk~~Lk~ei~~~in~~l~~~~~~~~V~~VlFt~f 159 (162)
T PRK07021 102 LPEVRSRLLLLLSRKHAAELATEEGKQKLAAEIKQTLSQPLVPGQPPQVVTDVLFTAF 159 (162)
T ss_pred CHHHHHHHHHHHhcCCHHHhcCHHHHHHHHHHHHHHHHHHHhccCCCCceeEEeeeec
Confidence 3679999999999999999987 699999999999999986532 35777777664
No 40
>PRK08455 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=83.17 E-value=12 Score=30.57 Aligned_cols=52 Identities=10% Similarity=0.153 Sum_probs=44.3
Q ss_pred cchHHHHHHHHhhcCChhHHhh--chHHHHHHHHHHHHHHhhcCCeEEEEEEEeec
Q 023988 125 PSIGNEVLKAVVAQFNADQLLT--ERPHVSALVRESLIKRARDFNIVLDDVAITHL 178 (274)
Q Consensus 125 ~~~~~~~lr~~~~~~~~~ei~~--~R~~i~~~i~~~l~~~l~~~Gi~v~~v~I~~i 178 (274)
.+.+++.+-..+++.+.+|+.+ .|+.+.+++.+.++..+.+- .|.+|.++++
T Consensus 126 ~p~IRD~ii~~Ls~kt~~dL~t~~Gk~~Lk~ei~~~iN~~L~~g--~V~~VyFT~F 179 (182)
T PRK08455 126 DPVIRDIIIRILSSKTVEEVSTNKGKERLKDEIVGKLNEFLIDG--FIKNVFFTDF 179 (182)
T ss_pred hhHHHHHHHHHHHcCCHHHhcCHHHHHHHHHHHHHHHHHHhccC--ceeEEEeEee
Confidence 4679999999999999999997 68999999999999999763 5677776654
No 41
>PRK05696 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=80.08 E-value=21 Score=28.72 Aligned_cols=54 Identities=17% Similarity=0.159 Sum_probs=43.3
Q ss_pred cchHHHHHHHHhhcCChhHHhh--chHHHHHHHHHHHHHHhhcC-C-eEEEEEEEeec
Q 023988 125 PSIGNEVLKAVVAQFNADQLLT--ERPHVSALVRESLIKRARDF-N-IVLDDVAITHL 178 (274)
Q Consensus 125 ~~~~~~~lr~~~~~~~~~ei~~--~R~~i~~~i~~~l~~~l~~~-G-i~v~~v~I~~i 178 (274)
.+.+++.+-..+++.+.+|+.+ .++.+.+++.++++..+... | -.|.+|.++++
T Consensus 110 ~p~IRd~i~~~Ls~k~~~~L~~~~gk~~Lr~el~~~i~~~l~~~~g~~~V~~VlFt~f 167 (170)
T PRK05696 110 IPLIESALLMTFSSATVDQLSTPAGKEELRQKALASVQETLQKVTGKPVVEKVLFTGF 167 (170)
T ss_pred hHHHHHHHHHHHhcCCHHHhcCHHHHHHHHHHHHHHHHHHHHhhcCCCceeEEeeeec
Confidence 4689999999999999999997 68889998888888877643 2 25777777654
No 42
>cd03404 Band_7_HflK Band_7_HflK: The band 7 domain of flotillin (reggie) like proteins. This group includes proteins similar to prokaryotic HlfK (High frequency of lysogenization K). Although many members of the band 7 family are lipid raft associated, prokaryote plasma membranes lack cholesterol and are unlikely to have lipid raft domains. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Escherichia coli HflK is an integral membrane protein which may localize to the plasma membrane. HflK associates with another band 7 family member (HflC) to form an HflKC complex. HflKC interacts with FtsH in a large complex termed the FtsH holo-enzyme. FtsH is an AAA ATP-dependent protease which exerts progressive proteolysis against membrane-embedded and soluble substrate proteins. HflKC can modulate the activity of FtsH. HflKC plays a role in the decision between lysogenic and lytic cycle growth during la
Probab=76.70 E-value=15 Score=31.62 Aligned_cols=38 Identities=16% Similarity=0.086 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcCcchhHH-HHHHHHHHH
Q 023988 203 FVVMKADQERRAAQLISEATSKFGLGLIEL-RRIEASREI 241 (274)
Q Consensus 203 ~~~~~A~~ea~aa~~~~~a~~~~~~~~~~~-~~lea~~~i 241 (274)
....+|++|+++.+.++++++++ |+.+.. .++|++.++
T Consensus 227 ~~~~~ae~~a~~~~~~~~a~~~~-~~~~~~~~~~~~~~~~ 265 (266)
T cd03404 227 EVIAEAQGEAARFESLLAEYKKA-PDVTRERLYLETMEEV 265 (266)
T ss_pred hHHHHHHHHHHHHHHHHHHHhhC-hHHHHHHHHHHHHHHh
Confidence 34556666666677788888776 776544 788887763
No 43
>KOG2668 consensus Flotillins [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=68.93 E-value=36 Score=30.72 Aligned_cols=26 Identities=27% Similarity=0.336 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHh----cCCCCEEEecCCC
Q 023988 233 RRIEASREIAATL----ARSPHVAYLPGGK 258 (274)
Q Consensus 233 ~~lea~~~ia~~~----~~~~~~i~l~~~~ 258 (274)
--||++..|+... ++.+...++++|+
T Consensus 356 ~lLealp~Ia~~ia~plaktnkI~v~s~g~ 385 (428)
T KOG2668|consen 356 TLLEALPMIAAEIAAPLAKTNKISVWSHGG 385 (428)
T ss_pred HHHHHHHHHHHHhccchhhcCeEEEEecCC
Confidence 3467777666553 3334444555543
No 44
>PRK04057 30S ribosomal protein S3Ae; Validated
Probab=66.89 E-value=35 Score=28.42 Aligned_cols=81 Identities=11% Similarity=0.102 Sum_probs=56.4
Q ss_pred ccCCCcceEEEEEEEEEeecCCCHhHHHHHhccccccccccchHHHHHHHHhhcCChhHHhhc--hHHHHHHHHHHHHHH
Q 023988 85 SGTKDLQMVNLTLRVLSRPEVSRLPYIFQHLGLEYDEKVLPSIGNEVLKAVVAQFNADQLLTE--RPHVSALVRESLIKR 162 (274)
Q Consensus 85 ~~tkd~~~v~v~~~v~y~v~~~~~~~~~~~~g~~~~~~~i~~~~~~~lr~~~~~~~~~ei~~~--R~~i~~~i~~~l~~~ 162 (274)
+.|+||..+.+.+.+.-.-+ . .......|+....+.+.+.+++.+++|+... .+.|+.+|.+..+..
T Consensus 102 vkTkDGy~lRv~~i~~T~~r------a-----~~sq~~~IRk~m~~~i~~~~~~~~~~e~V~~~i~g~i~~eI~~~~k~I 170 (203)
T PRK04057 102 VTTKDGYKVRVKPVALTTKR------A-----RTSQKHAIRKIMEEIIEEKASELTFEEFVQEIVFGKLASEIYKEAKKI 170 (203)
T ss_pred EEcCCCCEEEEEEEEEEchh------h-----hhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHccchHHHHHHHhhhhc
Confidence 57999999988875532211 0 1223445888899999999999999999973 577777777777666
Q ss_pred hhcCCeEEEEEEEe
Q 023988 163 ARDFNIVLDDVAIT 176 (274)
Q Consensus 163 l~~~Gi~v~~v~I~ 176 (274)
.--..++|.-+.+.
T Consensus 171 yPlr~veIrKvkvl 184 (203)
T PRK04057 171 YPLRRVEIRKSKVL 184 (203)
T ss_pred cCcceEEEEEEEEE
Confidence 54445666666554
No 45
>PTZ00399 cysteinyl-tRNA-synthetase; Provisional
Probab=64.31 E-value=76 Score=31.47 Aligned_cols=46 Identities=17% Similarity=0.274 Sum_probs=28.4
Q ss_pred HHHHHHH-HhhcCCeEEEEEE----EeeccCCHHHHHHHHHHHHHHHHHHH
Q 023988 155 VRESLIK-RARDFNIVLDDVA----ITHLSYGAEFSRAVEQKQVAQQEAER 200 (274)
Q Consensus 155 i~~~l~~-~l~~~Gi~v~~v~----I~~i~~p~~~~~ai~~k~~A~qeae~ 200 (274)
..+.|++ .|...||.|+|-. +=....|+++.+..++|..++++.++
T Consensus 519 ~~D~iRd~~L~~~Gi~l~D~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 569 (651)
T PTZ00399 519 LCDKLRDEWLPNLGIRIEDKPDGPSVWKLDDKEELQREKEEKEALKEQKRL 569 (651)
T ss_pred HHHHHHHHHHHHCCCEEEEcCCCceEEEECCHHHHHHHHHHHHHHHHHHHH
Confidence 3556676 5888999998842 22344556777777766544444333
No 46
>TIGR01933 hflK HflK protein. HflK and HflC are paralogs encoded by tandem genes in Proteobacteria, spirochetes, and some other bacterial lineages. The HflKC complex is anchored in the membrane and exposed to the periplasm. The complex is not active as a protease, but rather binds to and appears to modulate the ATP-dependent protease FtsH. The overall function of HflKC is not fully described.//Regulation of FtsH by HflKC appears to be negative (PubMed:8947034,PubMed:96367)
Probab=58.83 E-value=40 Score=28.96 Aligned_cols=48 Identities=15% Similarity=0.175 Sum_probs=26.5
Q ss_pred HHHHHHHHHhhcCCeEEE--EEEEeeccCCH-HHHHHHHHHHHHHHHHHHhH
Q 023988 154 LVRESLIKRARDFNIVLD--DVAITHLSYGA-EFSRAVEQKQVAQQEAERSK 202 (274)
Q Consensus 154 ~i~~~l~~~l~~~Gi~v~--~v~I~~i~~p~-~~~~ai~~k~~A~qeae~a~ 202 (274)
.+.+.+.+.+.+. +.-- .+.|.++.+-. ..-+.+.+.+.+.+.+++.+
T Consensus 115 ~i~~~i~~~l~~~-~~~~~~GI~V~~v~I~~i~~p~~v~~a~~~~~~a~q~~ 165 (261)
T TIGR01933 115 QIREDTKERLNEI-IDNYDLGITVTDVNFQSARPPEEVKEAFDDVIIAREDE 165 (261)
T ss_pred HHHHHHHHHHHHH-HhhhcCCcEEEEEEEEecCCCHHHHHHHHHHHHHHHHH
Confidence 3444455555442 2322 57788887765 34556666666555555544
No 47
>PRK11029 FtsH protease regulator HflC; Provisional
Probab=56.60 E-value=60 Score=29.30 Aligned_cols=50 Identities=14% Similarity=0.196 Sum_probs=36.7
Q ss_pred EEEEeeccCCH-HHHHHHHHHHHHHHHHHHhH-HHHHHHHHHHHHHHHHHHH
Q 023988 172 DVAITHLSYGA-EFSRAVEQKQVAQQEAERSK-FVVMKADQERRAAQLISEA 221 (274)
Q Consensus 172 ~v~I~~i~~p~-~~~~ai~~k~~A~qeae~a~-~~~~~A~~ea~aa~~~~~a 221 (274)
.+.|.++.+-+ .+-+.+.+.+..+..+||.+ +...+||+|++++++.+++
T Consensus 202 GI~V~~V~i~~i~~P~~v~~ai~~~~~Aere~~a~~~~aege~~a~~~~a~A 253 (334)
T PRK11029 202 GIEVVDVRIKQINLPTEVSDAIYNRMRAEREAVARRHRSQGQEEAEKLRATA 253 (334)
T ss_pred CcEEEEEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47788888865 56777888888888888854 5677888887776665444
No 48
>TIGR01932 hflC HflC protein. HflK and HflC are paralogs encoded by tandem genes in Proteobacteria, spirochetes, and some other bacterial lineages. The HflKC complex is anchored in the membrane and exposed to the periplasm. The complex is not active as a protease, but rather binds to and appears to modulate the ATP-dependent protease FtsH. The overall function of HflKC is not fully described.//Regulation of FtsH protease appears to be negative (PubMed:8947034, PubMed:96367)
Probab=54.16 E-value=58 Score=29.04 Aligned_cols=81 Identities=15% Similarity=0.230 Sum_probs=44.9
Q ss_pred eEEEEEEEeeccCCH-HHHHHHHHHHHHHHHHHHh-HHHHHHHHHHHHH-----------HHHHHHHhhhcCcchhHH-H
Q 023988 168 IVLDDVAITHLSYGA-EFSRAVEQKQVAQQEAERS-KFVVMKADQERRA-----------AQLISEATSKFGLGLIEL-R 233 (274)
Q Consensus 168 i~v~~v~I~~i~~p~-~~~~ai~~k~~A~qeae~a-~~~~~~A~~ea~a-----------a~~~~~a~~~~~~~~~~~-~ 233 (274)
+.=..+.|.++.+-+ .+-+.+.+....+..+|+. .+...++++|+++ .+++++|.++. ..++= =
T Consensus 188 ~~~~Gi~V~~V~I~~i~~p~~v~~Ai~~~~~aere~~a~~~r~ege~~a~~i~a~A~~e~~~~~aeA~a~a--~~~~Aeg 265 (317)
T TIGR01932 188 LKDIGIEVVDVRIKKINYSDELSESIYNRMRSEREQIARMHRSQGEEKAEEILGKAEYEVRKILSEAYRTA--RIIKGEG 265 (317)
T ss_pred HhcCCcEEEEEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHhhH
Confidence 344678888888855 4566777776666677764 4555555555444 44445544321 11111 1
Q ss_pred HHHHHHHHHHHhcCCCC
Q 023988 234 RIEASREIAATLARSPH 250 (274)
Q Consensus 234 ~lea~~~ia~~~~~~~~ 250 (274)
..++.+.++++++++|.
T Consensus 266 ea~a~~~~~~a~~~~p~ 282 (317)
T TIGR01932 266 DAEAAKIYSDAYGKDPE 282 (317)
T ss_pred HHHHHHHHHHHHccCHH
Confidence 34455555556666664
No 49
>COG2268 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=53.86 E-value=91 Score=30.09 Aligned_cols=57 Identities=25% Similarity=0.282 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcCcc-hhHH--HHHHHHHHHHHHhcCCC------CEEEecCCCC
Q 023988 203 FVVMKADQERRAAQLISEATSKFGLG-LIEL--RRIEASREIAATLARSP------HVAYLPGGKN 259 (274)
Q Consensus 203 ~~~~~A~~ea~aa~~~~~a~~~~~~~-~~~~--~~lea~~~ia~~~~~~~------~~i~l~~~~~ 259 (274)
....++++||++.+.+++++...+.. ...+ ..++++-.+++..++.. ++..+|+.++
T Consensus 428 a~r~kG~AEAea~r~lAEa~~~~~~a~~a~~~~~~vq~Lp~~~~~~~~~~~~i~~~kV~~i~~~~~ 493 (548)
T COG2268 428 AIREKGKAEAEAKRALAEAIQVLGDAAAAELFKALVQALPEVAEEAAQPMKNIDSEKVRVIGGANG 493 (548)
T ss_pred HHHHhhhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhcccccccceeEEecCCccc
Confidence 34555566666677788876543222 2222 33666666665544322 3555665544
No 50
>PRK10081 entericidin B membrane lipoprotein; Provisional
Probab=49.66 E-value=19 Score=22.52 Aligned_cols=22 Identities=23% Similarity=0.309 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhcc
Q 023988 10 FLTNIARAAFGLGAAATVLNSS 31 (274)
Q Consensus 10 ~m~~~~~~~~~~~~~~~~~~~~ 31 (274)
||++.+.+++++++..+.+..|
T Consensus 1 MmKk~i~~i~~~l~~~~~l~~C 22 (48)
T PRK10081 1 MVKKTIAAIFSVLVLSTVLTAC 22 (48)
T ss_pred ChHHHHHHHHHHHHHHHHHhhh
Confidence 5777777766655555555444
No 51
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=49.46 E-value=12 Score=27.15 Aligned_cols=20 Identities=40% Similarity=0.237 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHhhcc
Q 023988 12 TNIARAAFGLGAAATVLNSS 31 (274)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~ 31 (274)
.++..++++++++++++++|
T Consensus 2 aSK~~llL~l~LA~lLlisS 21 (95)
T PF07172_consen 2 ASKAFLLLGLLLAALLLISS 21 (95)
T ss_pred chhHHHHHHHHHHHHHHHHh
Confidence 33444444445445455444
No 52
>cd03405 Band_7_HflC Band_7_HflC: The band 7 domain of flotillin (reggie) like proteins. This group includes proteins similar to prokaryotic HlfC (High frequency of lysogenization C). Although many members of the band 7 family are lipid raft associated, prokaryote plasma membranes lack cholesterol and are unlikely to have lipid raft domains. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Escherichia coli HflC is an integral membrane protein which may localize to the plasma membrane. HflC associates with another band 7 family member (HflK) to form an HflKC complex. HflKC interacts with FtsH in a large complex termed the FtsH holo-enzyme. FtsH is an AAA ATP-dependent protease which exerts progressive proteolysis against membrane-embedded and soluble substrate proteins. HflKC can modulate the activity of FtsH. HflKC plays a role in the decision between lysogenic and lytic cycle growth during la
Probab=48.08 E-value=38 Score=28.61 Aligned_cols=64 Identities=13% Similarity=0.177 Sum_probs=38.8
Q ss_pred HHHHHHHHHhhcCCeEEEEEEEeeccCCH-HHHHHHHHHHHHHHHHHHhH-HHHHHHHHHHHHHHHH
Q 023988 154 LVRESLIKRARDFNIVLDDVAITHLSYGA-EFSRAVEQKQVAQQEAERSK-FVVMKADQERRAAQLI 218 (274)
Q Consensus 154 ~i~~~l~~~l~~~Gi~v~~v~I~~i~~p~-~~~~ai~~k~~A~qeae~a~-~~~~~A~~ea~aa~~~ 218 (274)
.+.+.+.+.+.+. +.=..+.|.++.+-+ .+-+.+.+.+.....+++.+ +...+|++++++.++.
T Consensus 120 ~i~~~i~~~l~~~-l~~~Gi~i~~v~i~~i~~p~~i~~ai~~~~~ae~~~~a~~~~ae~~~~a~~~~ 185 (242)
T cd03405 120 ELMEEIRRAVAEE-AKELGIEVVDVRIKRIDLPEEVSESVYRRMRAERERIAAEFRAEGEEEAERIR 185 (242)
T ss_pred HHHHHHHHHHHHH-HHccCcEEEEEEEEeccCCHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 4555555555543 444578888888754 35666777666666777654 5555666666554433
No 53
>cd03407 Band_7_4 A subgroup of the band 7 domain of flotillin (reggie) like proteins. This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic H
Probab=44.67 E-value=43 Score=28.88 Aligned_cols=44 Identities=18% Similarity=0.108 Sum_probs=23.1
Q ss_pred EEEEEeeccCCH-HHHHHHHHHHHHHHHHHHh-HHHHHHHHHHHHH
Q 023988 171 DDVAITHLSYGA-EFSRAVEQKQVAQQEAERS-KFVVMKADQERRA 214 (274)
Q Consensus 171 ~~v~I~~i~~p~-~~~~ai~~k~~A~qeae~a-~~~~~~A~~ea~a 214 (274)
-.+.|.++.+-+ ..-+.+.+.+.....|++. ++.+.+|++++.+
T Consensus 127 ~GI~V~~v~I~~i~~p~~v~~A~~~~~~A~~~~~a~~~~Aea~~~~ 172 (262)
T cd03407 127 YGFEIVATLITDIDPDAEVKRAMNEINAAQRQRVAAVHKAEAEKIK 172 (262)
T ss_pred cCcEEEEEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 456666666543 3445555555555555553 3445555555544
No 54
>PF08400 phage_tail_N: Prophage tail fibre N-terminal; InterPro: IPR013609 This entry represents the N terminus of phage 933W tail fibre protein. The characteristics of the protein distribution suggest prophage matches.
Probab=41.16 E-value=66 Score=24.92 Aligned_cols=36 Identities=19% Similarity=0.118 Sum_probs=20.7
Q ss_pred eeccCCHHHHHHHHHH-HHHHHHHHHhHHHHHHHHHH
Q 023988 176 THLSYGAEFSRAVEQK-QVAQQEAERSKFVVMKADQE 211 (274)
Q Consensus 176 ~~i~~p~~~~~ai~~k-~~A~qeae~a~~~~~~A~~e 211 (274)
.+.+++|++...+++. ..+++.++.++...++|++.
T Consensus 94 ~e~dl~Pevlk~fe~m~~~a~~~a~~a~~~~~~A~~~ 130 (134)
T PF08400_consen 94 DEDDLRPEVLKRFEEMVAQAARSAEAAAESAEQAKQA 130 (134)
T ss_pred ccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678889998888753 23334444444444444333
No 55
>PF01015 Ribosomal_S3Ae: Ribosomal S3Ae family; InterPro: IPR001593 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. A number of eukaryotic and archaebacterial ribosomal proteins can be grouped on the basis of sequence similarities. One of these families consists of proteins that have from 220 to 250 amino acids and represents Rps1 (eukaryotic) and Rps3Ae (archaeal and eukaryotic).; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 2XZN_4 2XZM_4 3U5C_B 3U5G_B.
Probab=40.73 E-value=75 Score=26.29 Aligned_cols=67 Identities=10% Similarity=0.101 Sum_probs=44.9
Q ss_pred ccCCCcceEEEEEEEEEeecCCCHhHHHHHhccccccccccchHHHHHHHHhhcCChhHHhhc--hHHHHHHHHHHHHHH
Q 023988 85 SGTKDLQMVNLTLRVLSRPEVSRLPYIFQHLGLEYDEKVLPSIGNEVLKAVVAQFNADQLLTE--RPHVSALVRESLIKR 162 (274)
Q Consensus 85 ~~tkd~~~v~v~~~v~y~v~~~~~~~~~~~~g~~~~~~~i~~~~~~~lr~~~~~~~~~ei~~~--R~~i~~~i~~~l~~~ 162 (274)
+.|+||..+.+.+.+. .-... .......|+..+.+.+.+.+++.+++|+... .+.++.+|.+..+..
T Consensus 108 vkT~DGy~lRvf~i~f-T~~ra----------~~sq~~~IRk~m~~ii~~~~~~~~~~e~V~~li~~~i~~eI~k~~k~I 176 (194)
T PF01015_consen 108 VKTKDGYLLRVFCIAF-TKKRA----------KSSQIKAIRKKMVEIITEEASELDLKELVKKLIPGSIGKEIEKACKKI 176 (194)
T ss_dssp EEETTTEEEEEEEEEE-E--------------TCHHHHHHHHHHHHHHHHHCCTSHHHHHHHHHCTTHHHHHHHHHHCTT
T ss_pred EEcCCCcEEEEEEEEE-Eeecc----------cchHHHHHHHHHHHHHHHHhccCcHHHHHHHHccchHHHHHHHHhccc
Confidence 5799999888776542 21110 1222345888899999999999999999973 566666666655443
No 56
>PF10717 ODV-E18: Occlusion-derived virus envelope protein ODV-E18; InterPro: IPR019655 Baculovirus occlusion-derived virus (ODV) derives its envelope from an intranuclear membrane source. Occlusion-derived viral envelope proteins that are detected in viral-induced intranuclear microvesicles, but not detected in the plasma membrane, cytoplasmic membranes, or the nuclear envelope. This entry represents ODV-E18 protein which is encoded by baculovirus late genes with transcription initiating from a TAAG motif. ODV-E18 exists as a dimer in the ODV envelope, which contains a hydrophobic domain that putatively acts as a target or retention signal for intranuclear microvesicles []. ; GO: 0019031 viral envelope
Probab=38.19 E-value=43 Score=23.52 Aligned_cols=14 Identities=7% Similarity=-0.066 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHHH
Q 023988 10 FLTNIARAAFGLGA 23 (274)
Q Consensus 10 ~m~~~~~~~~~~~~ 23 (274)
||..++.+++++++
T Consensus 27 lMtILivLVIIiLl 40 (85)
T PF10717_consen 27 LMTILIVLVIIILL 40 (85)
T ss_pred HHHHHHHHHHHHHH
Confidence 45445444444433
No 57
>COG5510 Predicted small secreted protein [Function unknown]
Probab=33.96 E-value=44 Score=20.42 Aligned_cols=22 Identities=14% Similarity=0.031 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhcc
Q 023988 10 FLTNIARAAFGLGAAATVLNSS 31 (274)
Q Consensus 10 ~m~~~~~~~~~~~~~~~~~~~~ 31 (274)
+|++.+.+++++++..+++.+|
T Consensus 1 mmk~t~l~i~~vll~s~llaaC 22 (44)
T COG5510 1 MMKKTILLIALVLLASTLLAAC 22 (44)
T ss_pred CchHHHHHHHHHHHHHHHHHHh
Confidence 4666555665555555555555
No 58
>PRK12613 galactose-6-phosphate isomerase subunit LacA; Provisional
Probab=33.17 E-value=34 Score=26.75 Aligned_cols=37 Identities=14% Similarity=0.035 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHhhcCCeEEEEEEEeeccCCHHHHHHHH
Q 023988 152 SALVRESLIKRARDFNIVLDDVAITHLSYGAEFSRAVE 189 (274)
Q Consensus 152 ~~~i~~~l~~~l~~~Gi~v~~v~I~~i~~p~~~~~ai~ 189 (274)
.-++++.+.+.|.+.|.+|.|+.-.+.++|+ +...+.
T Consensus 11 G~~lK~~l~~~L~~~g~eV~D~G~~~~dypd-~a~~va 47 (141)
T PRK12613 11 GNALKELIKSFLQEEGYDIIDVTDINSDFID-NTLAVA 47 (141)
T ss_pred hHHHHHHHHHHHHHCCCEEEEcCCCCCChHH-HHHHHH
Confidence 3467888889999999999999876666665 433333
No 59
>cd03401 Band_7_prohibitin Band_7_prohibitin. A subgroup of the band 7 domain of flotillin (reggie) like proteins. This subgroup group includes proteins similar to prohibitin (a lipid raft-associated integral membrane protein). Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. These microdomains in addition to being stable scaffolds may also be also dynamic units with their own regulatory functions. Prohibitin is a mitochondrial inner-membrane protein which may act as a chaperone for the stabilization of mitochondrial proteins. Human prohibitin forms a heter-oligomeric complex with Bap-37 (prohibitin 2, a band 7 domain carrying homologue). This complex may protect non-assembled membrane proteins against proteolysis by the m-AAA protease. Prohibitin and Bap-37 yeast homologues have been implicated in yeast longevity and, in the maintenance of mitochondrial morphology.
Probab=32.89 E-value=67 Score=26.04 Aligned_cols=10 Identities=30% Similarity=0.541 Sum_probs=4.7
Q ss_pred HHHHHHHHHH
Q 023988 204 VVMKADQERR 213 (274)
Q Consensus 204 ~~~~A~~ea~ 213 (274)
.+++|++||+
T Consensus 185 ~~~~A~gea~ 194 (196)
T cd03401 185 AVIRAEGEAE 194 (196)
T ss_pred HHHHhhhhhh
Confidence 3444444444
No 60
>PF09796 QCR10: Ubiquinol-cytochrome-c reductase complex subunit (QCR10); InterPro: IPR019182 This entry represents subunit 10 of the cytochrome b-c1 complex (also known as the ubiquinol-cytochrome c reductase complex or complex III). This complex is located on the inner mitochondrial membrane and it couples electron transfer from ubiquinol to cytochrome. Subunit 10 is required for stable association of the iron-sulphur protein with the complex [].
Probab=31.97 E-value=93 Score=20.78 Aligned_cols=35 Identities=20% Similarity=0.181 Sum_probs=27.0
Q ss_pred Ccch-hhHhHHHHHHHHHHHHHHHHHHhhccEEEec
Q 023988 2 GSSQ-AAVSFLTNIARAAFGLGAAATVLNSSLYTVD 36 (274)
Q Consensus 2 ~~~~-~~~~~m~~~~~~~~~~~~~~~~~~~~~~~V~ 36 (274)
|.++ ++.....++..++.+.+++++++.+++-++.
T Consensus 4 git~~~~~~~~p~~a~wG~aa~~~v~~f~~~vPr~q 39 (64)
T PF09796_consen 4 GITPKTLTRYGPNLALWGGAAGAAVLFFTSGVPRFQ 39 (64)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHH
Confidence 4455 7778888899999888888888888765443
No 61
>COG1890 RPS1A Ribosomal protein S3AE [Translation, ribosomal structure and biogenesis]
Probab=28.12 E-value=3.6e+02 Score=22.61 Aligned_cols=82 Identities=11% Similarity=0.114 Sum_probs=54.9
Q ss_pred cccCCCcceEEEEEEEEEeecCCCHhHHHHHhccccccccccchHHHHHHHHhhcCChhHHhhc--hHHHHHHHHHHHHH
Q 023988 84 VSGTKDLQMVNLTLRVLSRPEVSRLPYIFQHLGLEYDEKVLPSIGNEVLKAVVAQFNADQLLTE--RPHVSALVRESLIK 161 (274)
Q Consensus 84 ~~~tkd~~~v~v~~~v~y~v~~~~~~~~~~~~g~~~~~~~i~~~~~~~lr~~~~~~~~~ei~~~--R~~i~~~i~~~l~~ 161 (274)
.+.|+||..+.+.+.+. .... . .......|+..+.+.+.+-.+..++++++.. -+.+..+|.+..+.
T Consensus 109 dVkTkDGy~~RV~~~~~-T~~r-----a-----~tSqk~aIRk~M~eii~~~a~e~~f~~fv~~li~g~i~~~I~~~akk 177 (214)
T COG1890 109 DVKTKDGYVLRVKAMAF-TRRR-----A-----KTSQKRAIRKIMFEIIEEKASELTFEEFVQELIPGRIAAEIEEAAKK 177 (214)
T ss_pred EEEecCCcEEEEEEEEE-Eehh-----c-----ccchHHHHHHHHHHHHHHHhccCCHHHHHHHHhhhhHHHHHHHHhhh
Confidence 46899999998887553 1110 0 1223455888889999999999999999863 46677777766665
Q ss_pred HhhcCCeEEEEEEEe
Q 023988 162 RARDFNIVLDDVAIT 176 (274)
Q Consensus 162 ~l~~~Gi~v~~v~I~ 176 (274)
..-=.-++|.-+.+.
T Consensus 178 IyPLr~veIrK~kvl 192 (214)
T COG1890 178 IYPLRKVEIRKSKVL 192 (214)
T ss_pred cccchheEEEeeeee
Confidence 543334566665554
No 62
>PRK06568 F0F1 ATP synthase subunit B; Validated
Probab=27.25 E-value=3e+02 Score=21.81 Aligned_cols=9 Identities=11% Similarity=0.010 Sum_probs=4.0
Q ss_pred ChhHHhhch
Q 023988 140 NADQLLTER 148 (274)
Q Consensus 140 ~~~ei~~~R 148 (274)
++..++.+|
T Consensus 28 PI~~~LeeR 36 (154)
T PRK06568 28 AILNSLDAK 36 (154)
T ss_pred HHHHHHHHH
Confidence 344444444
No 63
>PRK03427 cell division protein ZipA; Provisional
Probab=27.01 E-value=37 Score=30.52 Aligned_cols=30 Identities=13% Similarity=0.168 Sum_probs=20.8
Q ss_pred HHH--HHHHHHHHHHHHHHHhhccEEEecCCe
Q 023988 10 FLT--NIARAAFGLGAAATVLNSSLYTVDGGE 39 (274)
Q Consensus 10 ~m~--~~~~~~~~~~~~~~~~~~~~~~V~~ge 39 (274)
||+ +++++++.+++++.++..++.+..-..
T Consensus 1 mMqdLrLiLivvGAIAIiAlL~HGlWtsRKer 32 (333)
T PRK03427 1 MMQDLRLILIIVGAIAIIALLVHGFWTSRKER 32 (333)
T ss_pred CchhhhhHHHHHHHHHHHHHHHHhhhhccccc
Confidence 466 577777777777888877776664443
No 64
>KOG2007 consensus Cysteinyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=26.11 E-value=3.1e+02 Score=26.40 Aligned_cols=9 Identities=22% Similarity=0.571 Sum_probs=4.1
Q ss_pred hcCCeEEEE
Q 023988 164 RDFNIVLDD 172 (274)
Q Consensus 164 ~~~Gi~v~~ 172 (274)
.++|+.+++
T Consensus 505 ~~~g~~led 513 (586)
T KOG2007|consen 505 LELGVRLED 513 (586)
T ss_pred HHhhhHHHh
Confidence 345544443
No 65
>PF11820 DUF3339: Protein of unknown function (DUF3339); InterPro: IPR021775 This family of proteins are functionally uncharacterised. This family is found in eukaryotes. Proteins in this family are about 70 amino acids in length.
Probab=25.42 E-value=1.1e+02 Score=20.63 Aligned_cols=34 Identities=15% Similarity=0.218 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHhhccEEEecCCeEEEEE
Q 023988 11 LTNIARAAFGLGAAATVLNSSLYTVDGGERAVLF 44 (274)
Q Consensus 11 m~~~~~~~~~~~~~~~~~~~~~~~V~~ge~gVv~ 44 (274)
|..+..+++.+++.+.+...-++.+|.+++.|-+
T Consensus 1 M~DWgpv~i~vvLFvlLsPGLLfqlPG~~r~veF 34 (68)
T PF11820_consen 1 MADWGPVLIAVVLFVLLSPGLLFQLPGRGRVVEF 34 (68)
T ss_pred CCcchhHHHHHHHHHHhCCceEEEecCCCceEEE
Confidence 4456666666776777777778899877777654
No 66
>TIGR01120 rpiB ribose 5-phosphate isomerase B. Involved in the non-oxidative branch of the pentose phospate pathway.
Probab=24.86 E-value=61 Score=25.40 Aligned_cols=24 Identities=8% Similarity=0.076 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHhhcCCeEEEEEEE
Q 023988 152 SALVRESLIKRARDFNIVLDDVAI 175 (274)
Q Consensus 152 ~~~i~~~l~~~l~~~Gi~v~~v~I 175 (274)
.-++++.|.+.|++.|.+|.++.-
T Consensus 10 G~~lK~~l~~~L~~~g~eV~D~G~ 33 (143)
T TIGR01120 10 GFILKEEIKAFLVERGVKVIDKGT 33 (143)
T ss_pred hHHHHHHHHHHHHHCCCEEEEeCC
Confidence 346788888999999999999885
No 67
>PF03780 Asp23: Asp23 family; InterPro: IPR005531 This entry represents the alkaline shock protein 23 family. These small proteins are involved in alkaline pH tolerance of Staphylococcus aureus [,].
Probab=24.07 E-value=1.3e+02 Score=21.61 Aligned_cols=15 Identities=20% Similarity=0.014 Sum_probs=9.1
Q ss_pred CCcceEEEEEEEEEe
Q 023988 88 KDLQMVNLTLRVLSR 102 (274)
Q Consensus 88 kd~~~v~v~~~v~y~ 102 (274)
++++.+++++.+.|-
T Consensus 57 ~~~i~v~l~v~v~~g 71 (108)
T PF03780_consen 57 DGGITVDLHVVVEYG 71 (108)
T ss_pred CcceEEEEEEEEECC
Confidence 556666666665554
No 68
>PF09432 THP2: Tho complex subunit THP2; InterPro: IPR018557 The THO complex plays a role in coupling transcription elongation to mRNA export. It is composed of subunits THP2, HPR1, THO2 and MFT1 [].
Probab=23.85 E-value=3.4e+02 Score=20.84 Aligned_cols=34 Identities=12% Similarity=0.135 Sum_probs=24.3
Q ss_pred HHHHHHhhcCCeEEEEEEEeeccCCHHHHHHHHH
Q 023988 157 ESLIKRARDFNIVLDDVAITHLSYGAEFSRAVEQ 190 (274)
Q Consensus 157 ~~l~~~l~~~Gi~v~~v~I~~i~~p~~~~~ai~~ 190 (274)
-.|-..++.-+=++..+.+.+-.+|+++...+++
T Consensus 13 vdL~~qve~sd~~~~~~~vd~~~pP~el~~iLe~ 46 (132)
T PF09432_consen 13 VDLAKQVEISDPEVSEFVVDDWNPPKELQSILEK 46 (132)
T ss_pred HHHHHHhcccCCCcceeeecCCCCCHHHHHHHHH
Confidence 3333444444557888999999999999888763
No 69
>PHA03029 hypothetical protein; Provisional
Probab=23.73 E-value=1.2e+02 Score=20.81 Aligned_cols=30 Identities=20% Similarity=-0.051 Sum_probs=23.4
Q ss_pred hHHHHHHHHHHHHHHHHHHhhccEEEecCC
Q 023988 9 SFLTNIARAAFGLGAAATVLNSSLYTVDGG 38 (274)
Q Consensus 9 ~~m~~~~~~~~~~~~~~~~~~~~~~~V~~g 38 (274)
=||+.++|++-..+++.+.+++-+++.+|.
T Consensus 54 wflnf~fwllp~al~a~fyffsiw~imnpq 83 (92)
T PHA03029 54 WFLNFLFWLLPFALAAAFYFFSIWFIMNPQ 83 (92)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhheeccc
Confidence 367888888877777888888888887764
No 70
>PF08802 CytB6-F_Fe-S: Cytochrome B6-F complex Fe-S subunit ; InterPro: IPR014909 The cytochrome b6-f complex mediates electron transfer between photosystem II (PSII) and photosystem I (PSI), cyclic electron flow around PSI, and state transitions. The cytochrome b6-f complex has 4 large subunits, these are: cytochrome b6, subunit IV (17 kDa polypeptide, PetD), cytochrome f and the Rieske protein, while the 4 small subunits are: PetG, PetL, PetM and PetN. The complex functions as a dimer. This protein corresponds to the alpha helical transmembrane domain of the cytochrome b6-f complex Rieske iron-sulphur subunit. ; GO: 0009496 plastoquinol-plastocyanin reductase activity, 0051537 2 iron, 2 sulfur cluster binding, 0055114 oxidation-reduction process, 0042651 thylakoid membrane; PDB: 1Q90_R 1VF5_D 2E75_D 2E74_D 2E76_D 2D2C_Q 2ZT9_D.
Probab=23.34 E-value=49 Score=19.77 Aligned_cols=29 Identities=10% Similarity=0.107 Sum_probs=14.2
Q ss_pred HhHHHHHHHHHHHHHHHHHHhhccEEEec
Q 023988 8 VSFLTNIARAAFGLGAAATVLNSSLYTVD 36 (274)
Q Consensus 8 ~~~m~~~~~~~~~~~~~~~~~~~~~~~V~ 36 (274)
=++|+.+..-.+.+.++..+.....+.||
T Consensus 9 R~lmN~ll~Gava~~a~~~lyP~~~ffvP 37 (39)
T PF08802_consen 9 RQLMNLLLGGAVAVPAGGMLYPYVKFFVP 37 (39)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHS-
T ss_pred HHHHHHHHHhhHHHHHHHHhhhheeEecC
Confidence 36777765555555544444333333333
No 71
>PF11471 Sugarporin_N: Maltoporin periplasmic N-terminal extension; InterPro: IPR021570 This N-terminal domain is found in members of the sugar porin family 1.B.3 from TC, They are related to LamB - the well characterised maltoporin of Escherichia coli for which the three-dimensional structures with and without its substrate have been obtained by X-ray diffraction. The protein consists of an 18 beta-stranded beta-barrel in contrast to proteins of the general bacterial porin family (GBP) and the Rhodobacter PorCa Porin (RPP) family which consist of 16 beta-stranded beta-barrels. Although maltoporin contains a wider beta-barrel than the porins of the GBP and RPP families (1.B.1 from TC and 1.B.7 from TC), it exhibits a narrower channel, showing only 5% of the ionic conductance of the latter porins.
Probab=22.16 E-value=2.4e+02 Score=18.49 Aligned_cols=18 Identities=22% Similarity=0.189 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 023988 203 FVVMKADQERRAAQLISE 220 (274)
Q Consensus 203 ~~~~~A~~ea~aa~~~~~ 220 (274)
.++..|++++++++...+
T Consensus 39 ~rL~~ae~ra~~ae~~~~ 56 (60)
T PF11471_consen 39 QRLQAAEQRAQAAEARAK 56 (60)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 345555555555544443
No 72
>cd03406 Band_7_3 A subgroup of the band 7 domain of flotillin (reggie) like proteins. This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic H
Probab=21.74 E-value=5.5e+02 Score=22.50 Aligned_cols=91 Identities=12% Similarity=0.135 Sum_probs=41.8
Q ss_pred cCCCHhHHHHHhccccccccccchHHHHHHHHhhcCChhHHhhch--HHH----HHHHHHHHHHHhhcCCeEE--EEEEE
Q 023988 104 EVSRLPYIFQHLGLEYDEKVLPSIGNEVLKAVVAQFNADQLLTER--PHV----SALVRESLIKRARDFNIVL--DDVAI 175 (274)
Q Consensus 104 ~~~~~~~~~~~~g~~~~~~~i~~~~~~~lr~~~~~~~~~ei~~~R--~~i----~~~i~~~l~~~l~~~Gi~v--~~v~I 175 (274)
...++..+|..++ ++-.......+...+|+.+ .++++.+ +++ ...+...+.+.+.+. +.- ..+.|
T Consensus 75 ~ivdp~~~~~~~~-~y~~~~~~~~I~~~Vrsav-----r~vig~~tldeVis~~Rd~I~~~I~~~l~e~-l~~y~~GI~I 147 (280)
T cd03406 75 NFLIPDSVYDIVK-NYTADYDKTLIFNKIHHEL-----NQFCSVHTLQEVYIDLFDQIDENLKLALQKD-LTRMAPGLEI 147 (280)
T ss_pred EecCHHHHHHHHH-HHhHhhHHHHHHHHHHHHH-----HHHhhhCCHHHHHhccHHHHHHHHHHHHHHH-HhccCCCcEE
Confidence 4455566666543 2222223444444444443 3343321 222 124555555555543 221 26677
Q ss_pred eeccCCH-HHHHHHHHHHHHHHHHHHhH
Q 023988 176 THLSYGA-EFSRAVEQKQVAQQEAERSK 202 (274)
Q Consensus 176 ~~i~~p~-~~~~ai~~k~~A~qeae~a~ 202 (274)
.++.+-. ++-+++.+.. .+-.+||.+
T Consensus 148 ~dV~I~~id~P~~V~~af-erM~aER~k 174 (280)
T cd03406 148 QAVRVTKPKIPEAIRRNY-ELMEAEKTK 174 (280)
T ss_pred EEEEEEecCCCHHHHHHH-HHHHHHHHh
Confidence 7776644 4555565543 233455544
No 73
>PLN03086 PRLI-interacting factor K; Provisional
Probab=21.71 E-value=1.3e+02 Score=29.31 Aligned_cols=22 Identities=14% Similarity=0.143 Sum_probs=12.8
Q ss_pred CCCCEEEecCCC-----------CCcceeccCc
Q 023988 247 RSPHVAYLPGGK-----------NSNMLLALNP 268 (274)
Q Consensus 247 ~~~~~i~l~~~~-----------~~~~~~~~~~ 268 (274)
++++.|+||++. .+||++.+.-
T Consensus 89 ~~GdKI~LPpSaL~~L~~~~~~~~~Pm~F~l~~ 121 (567)
T PLN03086 89 GNGDKIKLPPSCFTELSDQGAFDKGPLYFRLSV 121 (567)
T ss_pred CCCCeEEcCHHHHHHHHhcCCCCCCCeEEEEec
Confidence 355677877531 2477776654
No 74
>TIGR00689 rpiB_lacA_lacB sugar-phosphate isomerases, RpiB/LacA/LacB family. Proteins of known function in this family act as sugar (pentose and/or hexose)-phosphate isomerases, including the LacA and LacB subunits of galactose-6-phosphate isomerases from Gram-positive bacteria and RpiB. RpiB is the second ribose phosphate isomerase of E. coli. It lacks homology to RpiA, its inducer is unknown (but is not ribose), and it can be replaced by the homologous galactose-6-phosphate isomerase of Streptococcus mutans, all of which suggests that the ribose phosphate isomerase activity of RpiB is a secondary function. On the other hand, there appear to be a significant number of species which contain rpiB, lack rpiA and seem to require rpi activity in order to copplete the pentose phosphate pathway.
Probab=21.53 E-value=74 Score=24.97 Aligned_cols=23 Identities=9% Similarity=0.111 Sum_probs=20.0
Q ss_pred HHHHHHHHHHhhcCCeEEEEEEE
Q 023988 153 ALVRESLIKRARDFNIVLDDVAI 175 (274)
Q Consensus 153 ~~i~~~l~~~l~~~Gi~v~~v~I 175 (274)
-.+++.|.+.|++.|.+|.++.-
T Consensus 10 ~~lK~~l~~~L~~~g~eV~D~G~ 32 (144)
T TIGR00689 10 LELKSEIIEHLKQKGHEVIDCGT 32 (144)
T ss_pred HHHHHHHHHHHHHCCCEEEEcCC
Confidence 46788888999999999999986
No 75
>PF08139 LPAM_1: Prokaryotic membrane lipoprotein lipid attachment site; InterPro: IPR012640 In prokaryotes, membrane lipoproteins are synthesized with a precursor signal peptide, which is cleaved by a specific lipoprotein signal peptidase (signal peptidase II). The peptidase recognises a conserved sequence and cuts upstream of a cysteine residue to which a glyceride-fatty acid lipid is attached [,]. This lipid attachment site is found in homologues of the VirB proteins of type IV secretion systems (T4SS). Conjugal transfer across the cell envelope of Gram-negative bacteria is mediated by a supramolecular structure termed mating pair formation (Mpf) complex. Collectively, secretion pathways ancestrally related to bacterial conjugation systems are now known as T4SS. T4SS are involved in the delivery of effector molecules to eukaryotic target cells; each of these systems exports distinct DNA or protein substrates to effect a myriad of changes in host cell physiology during infection [].
Probab=20.71 E-value=1.5e+02 Score=15.83 Aligned_cols=14 Identities=21% Similarity=0.346 Sum_probs=8.7
Q ss_pred HhHHHHHHHHHHHH
Q 023988 8 VSFLTNIARAAFGL 21 (274)
Q Consensus 8 ~~~m~~~~~~~~~~ 21 (274)
.+||+++....+++
T Consensus 4 ~~mmKkil~~l~a~ 17 (25)
T PF08139_consen 4 LSMMKKILFPLLAL 17 (25)
T ss_pred HHHHHHHHHHHHHH
Confidence 46788876555443
No 76
>PF14991 MLANA: Protein melan-A; PDB: 2GTZ_F 2GT9_F 3MRO_P 2GUO_C 3MRQ_P 2GTW_C 3L6F_C 3MRP_P.
Probab=20.36 E-value=34 Score=25.59 Aligned_cols=25 Identities=12% Similarity=0.104 Sum_probs=0.0
Q ss_pred HHHHHHHHHhhccEE-EecCCeEEEE
Q 023988 19 FGLGAAATVLNSSLY-TVDGGERAVL 43 (274)
Q Consensus 19 ~~~~~~~~~~~~~~~-~V~~ge~gVv 43 (274)
++++++++++++||| .=..|+.-+.
T Consensus 32 L~VILgiLLliGCWYckRRSGYk~L~ 57 (118)
T PF14991_consen 32 LIVILGILLLIGCWYCKRRSGYKTLR 57 (118)
T ss_dssp --------------------------
T ss_pred HHHHHHHHHHHhheeeeecchhhhhh
Confidence 445566777888885 5666766654
No 77
>PRK00753 psbL photosystem II reaction center L; Provisional
Probab=20.10 E-value=1.1e+02 Score=18.04 Aligned_cols=19 Identities=21% Similarity=0.065 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHhhccEE
Q 023988 15 ARAAFGLGAAATVLNSSLY 33 (274)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~ 33 (274)
..++++++.++.+++++++
T Consensus 19 Ly~GlLlifvl~vLFssYf 37 (39)
T PRK00753 19 LYLGLLLVFVLGILFSSYF 37 (39)
T ss_pred HHHHHHHHHHHHHHHHhhc
Confidence 3455566666666777654
Done!