Query 023988
Match_columns 274
No_of_seqs 181 out of 1516
Neff 8.7
Searched_HMMs 29240
Date Mon Mar 25 16:15:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023988.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023988hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3bk6_A PH stomatin; archaea, t 100.0 3.4E-29 1.1E-33 206.1 15.4 173 65-244 2-177 (188)
2 4fvg_A Stomatin; mixed alpha-b 99.9 1.1E-24 3.7E-29 169.1 10.8 130 61-194 3-133 (133)
3 1win_A Flotillin 2; BAND 7 dom 99.8 1.7E-22 5.7E-27 158.7 1.9 130 65-195 3-139 (143)
4 2rpb_A Hypothetical membrane p 99.7 6.5E-19 2.2E-23 132.7 5.2 109 71-183 4-113 (113)
5 2zuo_A MVP, major vault protei 98.0 0.00056 1.9E-08 65.7 20.0 156 32-188 459-654 (861)
6 2b5u_A Colicin E3; high resolu 73.1 11 0.00038 34.2 7.7 50 165-214 277-332 (551)
7 3j20_A 30S ribosomal protein S 46.1 1.1E+02 0.0037 24.3 9.3 81 84-175 108-190 (198)
8 2acm_B Mucin-1; auto-catalytic 42.6 24 0.00082 21.8 3.0 21 163-183 32-52 (55)
9 2xzm_4 40S ribosomal protein S 35.0 34 0.0012 28.5 3.8 76 84-162 129-210 (265)
10 1q90_R Cytochrome B6-F complex 28.9 23 0.00079 21.4 1.3 33 8-40 12-44 (49)
11 3bk6_A PH stomatin; archaea, t 28.7 2E+02 0.0067 22.0 7.4 70 150-221 88-159 (188)
12 3bz1_X Photosystem II PSBX pro 25.0 1E+02 0.0036 18.5 3.7 22 1-22 10-31 (50)
No 1
>3bk6_A PH stomatin; archaea, trimer, coiled- coil, flotillin, SPFH, membrane fusion, trafficking, transmembrane, membrane protein; 3.20A {Pyrococcus horikoshii}
Probab=99.96 E-value=3.4e-29 Score=206.05 Aligned_cols=173 Identities=21% Similarity=0.252 Sum_probs=147.0
Q ss_pred ccceeEEEEeeeeeeeeeec-ccCCCcceEEEEEEEEEeecCCCHhHHHHHhccccccccccchHHHHHHHHhhcCChhH
Q 023988 65 WLQKPFIFDIRTRPHTFSSV-SGTKDLQMVNLTLRVLSRPEVSRLPYIFQHLGLEYDEKVLPSIGNEVLKAVVAQFNADQ 143 (274)
Q Consensus 65 ~~~~v~~~~~~~~~~~~~~~-~~tkd~~~v~v~~~v~y~v~~~~~~~~~~~~g~~~~~~~i~~~~~~~lr~~~~~~~~~e 143 (274)
|++++.++|+|.++++++.+ +.|+|+++|.++++++|||. ++..++.. ..++...+.+.+++++|+++|+++++|
T Consensus 2 fi~~v~~vd~r~~~~~v~~~~v~TkD~~~V~v~~~v~yrI~--dp~~~~~~--v~~~~~~i~~~~~~~lR~vig~~~l~e 77 (188)
T 3bk6_A 2 IFEKAVIVDLRTQVLDVPVQETITKDNVPVRVNAVVYFRVV--DPVKAVTQ--VKNYIMATSQISQTTLRSVIGQAHLDE 77 (188)
T ss_dssp CEEECCCCCSSCEEEEEEEEEEECTTSCEEEEEEEEEEEES--CHHHHHHS--SSCHHHHHHHHHHHHHHHHHHTSCHHH
T ss_pred ceEEEEEEeeeEEEEecCCceeEcCCCCEEEEEEEEEEEEC--CHHHHHHH--hcCHHHHHHHHHHHHHHHHHccCCHHH
Confidence 56899999999999999874 89999999999999999995 56666554 334455688999999999999999999
Q ss_pred HhhchHHHHHHHHHHHHHHhhcCCeEEEEEEEeeccCCHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhh
Q 023988 144 LLTERPHVSALVRESLIKRARDFNIVLDDVAITHLSYGAEFSRAVEQKQVAQQEAERSKFVVMKADQERRAAQLISEATS 223 (274)
Q Consensus 144 i~~~R~~i~~~i~~~l~~~l~~~Gi~v~~v~I~~i~~p~~~~~ai~~k~~A~qeae~a~~~~~~A~~ea~aa~~~~~a~~ 223 (274)
++++|++|++.+++.+++.+++|||+|.+|.|++|+||+++.++|++++.|+++++ +.+.+|++|+++++.++++..
T Consensus 78 ll~~R~~i~~~i~~~l~~~~~~~GI~v~~v~I~~i~~p~ev~~a~~~~~~Aere~~---A~i~~Aege~~a~~~~a~a~~ 154 (188)
T 3bk6_A 78 LLSERDKLNMQLQRIIDEATDPWGIKVTAVEIKDVELPAGMQKAMARQAEAERERR---ARITLAEAERQAAEKLREAAE 154 (188)
T ss_dssp HHHCHHHHHHHHHHHHHHHTGGGTEEEEEEEEEEEEEETTHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHHHHHHhcCeEEEEEEEEecCCCHHHHHHHHHHHHHHHHHH---HHHHHhHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999877776553 468899999999999998864
Q ss_pred h--cCcchhHHHHHHHHHHHHHH
Q 023988 224 K--FGLGLIELRRIEASREIAAT 244 (274)
Q Consensus 224 ~--~~~~~~~~~~lea~~~ia~~ 244 (274)
. .+|.++++|++|++.+++..
T Consensus 155 ~~~~~~~~l~lr~le~~~~ia~~ 177 (188)
T 3bk6_A 155 IISEHPMALQLRTLQTISDVAGD 177 (188)
T ss_dssp HHHHCTTHHHHHHTTC-------
T ss_pred HHHhCHHHHHHHHHHHHHHHhcC
Confidence 2 24999999999999998754
No 2
>4fvg_A Stomatin; mixed alpha-beta fold, membrane scaffold, membrane protein; 1.80A {Mus musculus} PDB: 4fvj_A 4fvf_A
Probab=99.91 E-value=1.1e-24 Score=169.13 Aligned_cols=130 Identities=17% Similarity=0.229 Sum_probs=101.0
Q ss_pred EeccccceeEEEEeeeeeeeeeec-ccCCCcceEEEEEEEEEeecCCCHhHHHHHhccccccccccchHHHHHHHHhhcC
Q 023988 61 FLIPWLQKPFIFDIRTRPHTFSSV-SGTKDLQMVNLTLRVLSRPEVSRLPYIFQHLGLEYDEKVLPSIGNEVLKAVVAQF 139 (274)
Q Consensus 61 ~~~P~~~~v~~~~~~~~~~~~~~~-~~tkd~~~v~v~~~v~y~v~~~~~~~~~~~~g~~~~~~~i~~~~~~~lr~~~~~~ 139 (274)
++.||++++.++|+|.++++++.+ +.|+|+..+.+++.++||+. |+..++.+ .++++..+...+++++|+++|++
T Consensus 3 l~~P~id~v~~vd~R~~~~d~~~q~vlT~D~~~v~Vd~~v~yrI~--Dp~~~~~~--v~~~~~~l~~~~~~~lR~vig~~ 78 (133)
T 4fvg_A 3 LGSPSTDSAAKVDMRTISFDIPPQEVLTKDSVTISVDGVVYYRVQ--NATLAVAN--ITNADSATRLLAQTTLRNALGTK 78 (133)
T ss_dssp -----------CCCSCEEEEEEEEEEECTTCCEEEEEEEEEEEES--CHHHHHHS--SSCHHHHHHHHHHHHHHHHHHTS
T ss_pred CCCCceeEEEEEEeEEEEecCCCeEEEeCCCCEEEEEEEEEEEEe--ehHHhHhh--hhhHHHHHHHHHHHHHHHHhccc
Confidence 678999999999999999999876 89999999999999999995 67766654 56677789999999999999999
Q ss_pred ChhHHhhchHHHHHHHHHHHHHHhhcCCeEEEEEEEeeccCCHHHHHHHHHHHHH
Q 023988 140 NADQLLTERPHVSALVRESLIKRARDFNIVLDDVAITHLSYGAEFSRAVEQKQVA 194 (274)
Q Consensus 140 ~~~ei~~~R~~i~~~i~~~l~~~l~~~Gi~v~~v~I~~i~~p~~~~~ai~~k~~A 194 (274)
++++++++|++|++++++.+++.+++||++|.+|.|++++||+++.++|++++.|
T Consensus 79 ~ldeil~~r~~i~~~i~~~l~~~~~~~GI~V~~V~ikdi~~P~~v~~am~~~~~A 133 (133)
T 4fvg_A 79 NLSQILSDREEIAHHMQSTLDDATDDWGIKVERVEIKDVKLPVQLQRAMAAEAEA 133 (133)
T ss_dssp CHHHHHHCHHHHHHHHHHHHHHHHGGGTEEEEEEEEEEEECCCC-----------
T ss_pred cHHHHHhhHHHHHHHHHHHHHHHHhcCCEEEEEEEEEecCCCHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999999999999999875443
No 3
>1win_A Flotillin 2; BAND 7 domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, cell adhesion; NMR {Mus musculus} SCOP: d.43.2.1
Probab=99.84 E-value=1.7e-22 Score=158.68 Aligned_cols=130 Identities=11% Similarity=0.093 Sum_probs=112.5
Q ss_pred ccceeEEEEeeeeeeeeeec-ccCCCcceEEEEEEEEEeecCCCHhHH---HHHh-cc--ccccccccchHHHHHHHHhh
Q 023988 65 WLQKPFIFDIRTRPHTFSSV-SGTKDLQMVNLTLRVLSRPEVSRLPYI---FQHL-GL--EYDEKVLPSIGNEVLKAVVA 137 (274)
Q Consensus 65 ~~~~v~~~~~~~~~~~~~~~-~~tkd~~~v~v~~~v~y~v~~~~~~~~---~~~~-g~--~~~~~~i~~~~~~~lr~~~~ 137 (274)
|++++.++|+|.++++++.+ +.|+|+.++.+|+.++|||.. ++..+ ...+ |. +..+..+.+.+++++|+++|
T Consensus 3 ~i~~v~~vdlr~~~ldv~~q~viTkD~v~v~Vdavv~~rI~d-d~~~~~~a~~~~~~~~~~~~~~~l~~~~~~~LR~viG 81 (143)
T 1win_A 3 SGSSGQRISLEIMTLQPRCEDVETAEGVALTVTGVAQVKIMT-EKELLAVACEQFLGKNVQDIKNVVLQTLEGHLRSILG 81 (143)
T ss_dssp CCCCCCSCCCSCEEECCCEEEEECSSSCEEEECCEEEEEECC-CSSCCHHHHHHHSSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred cceEEEEEECceEEEeCCcceeEcCCCCEEEEEEEEEEEECC-CHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHh
Confidence 57999999999999999987 899999999999999999962 23222 2222 32 34567788999999999999
Q ss_pred cCChhHHhhchHHHHHHHHHHHHHHhhcCCeEEEEEEEeeccCCHHHHHHHHHHHHHH
Q 023988 138 QFNADQLLTERPHVSALVRESLIKRARDFNIVLDDVAITHLSYGAEFSRAVEQKQVAQ 195 (274)
Q Consensus 138 ~~~~~ei~~~R~~i~~~i~~~l~~~l~~~Gi~v~~v~I~~i~~p~~~~~ai~~k~~A~ 195 (274)
+++++|++++|++|.+.+++.+++.+++||++|.+|.|+||++|+++.++|++++.|+
T Consensus 82 ~~tldeils~R~~i~~~v~~~~~~~~~~~Gi~V~~v~IkdI~~p~~~~~am~~~~~Ae 139 (143)
T 1win_A 82 TLTVEQIYQDRDQFAKLVREVAAPDVGRMGIEILSFTIKDVYDKVDYLSSLGKTQTSG 139 (143)
T ss_dssp HSCHHHHHHTHHHHHHHHHHHHHHHHTTTTEEEEEEECCCEECTTCHHHHHCCCCCCC
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEeecChHHHHHHHHHHHhhc
Confidence 9999999999999999999999999999999999999999999999999998754443
No 4
>2rpb_A Hypothetical membrane protein; SPFH domain; NMR {Pyrococcus horikoshii}
Probab=99.75 E-value=6.5e-19 Score=132.68 Aligned_cols=109 Identities=17% Similarity=0.168 Sum_probs=97.8
Q ss_pred EEEeeeeeeeeee-cccCCCcceEEEEEEEEEeecCCCHhHHHHHhccccccccccchHHHHHHHHhhcCChhHHhhchH
Q 023988 71 IFDIRTRPHTFSS-VSGTKDLQMVNLTLRVLSRPEVSRLPYIFQHLGLEYDEKVLPSIGNEVLKAVVAQFNADQLLTERP 149 (274)
Q Consensus 71 ~~~~~~~~~~~~~-~~~tkd~~~v~v~~~v~y~v~~~~~~~~~~~~g~~~~~~~i~~~~~~~lr~~~~~~~~~ei~~~R~ 149 (274)
++|+|.++++++. .+.|+|++++.+++.++||+. |+..++.+++ ..+..+.+.+++++|+++|+++++|++++|+
T Consensus 4 ~vd~r~~~~~~~~~~v~T~D~~~v~v~~~v~~rI~--dp~~~~~~v~--~~~~~l~~~~~~~lR~vig~~~l~ei~~~R~ 79 (113)
T 2rpb_A 4 HVDLREHVIDVPPQEVICKDNVVVTVDAVVYYQVI--DPVKAVYNVS--DFLMAIVKLAQTNLRAIIGEMELDETLSGRD 79 (113)
T ss_dssp CCCCCCEEEECCCEEEECTTSCEEEECEEEEEEES--CTTTCTTTTT--HHHHHHHHHHHHHHHHHHTSCCTTHHHHCHH
T ss_pred EEeeeEEEEecCcceeEeCCCCEEEEEEEEEEEEC--CHHHHHHhcC--CHHHHHHHHHHHHHHHHHhcCcHHHHHhCHH
Confidence 5789999999887 489999999999999999995 4556666543 4556699999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhcCCeEEEEEEEeeccCCHH
Q 023988 150 HVSALVRESLIKRARDFNIVLDDVAITHLSYGAE 183 (274)
Q Consensus 150 ~i~~~i~~~l~~~l~~~Gi~v~~v~I~~i~~p~~ 183 (274)
+|++.+++.+++.+++||++|.+|.|++++||++
T Consensus 80 ~i~~~i~~~l~~~~~~~Gi~v~~v~I~~i~~p~e 113 (113)
T 2rpb_A 80 IINARLREELDKITDRWGVKITRVEIQRIDPPKD 113 (113)
T ss_dssp HHHHHHHHHHHHHHGGGTEECCCEEECCCBCCCC
T ss_pred HHHHHHHHHHHHHHHhcCeEEEEEEEEEecCCCC
Confidence 9999999999999999999999999999999974
No 5
>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A
Probab=98.03 E-value=0.00056 Score=65.75 Aligned_cols=156 Identities=12% Similarity=0.004 Sum_probs=99.9
Q ss_pred EEEecCCeEEEEEecccceeeceecCeeEEeccccceeEEEEeee------ee-----ee-------eeecccCCCcceE
Q 023988 32 LYTVDGGERAVLFDRFRGVIDETIGEGTHFLIPWLQKPFIFDIRT------RP-----HT-------FSSVSGTKDLQMV 93 (274)
Q Consensus 32 ~~~V~~ge~gVv~~~~G~~~~~~~~pG~~~~~P~~~~v~~~~~~~------~~-----~~-------~~~~~~tkd~~~v 93 (274)
.|.||.+...-+|+.--|....+.+|-+.+.-|- +.+..+++.- .. +. .-..+-|+|...+
T Consensus 459 ~~rvphnaaVqvyDy~~~~~RvvfGP~lv~L~Pd-E~ftvlsLSgg~PK~~~~i~sl~L~lGPdf~tD~i~vET~DhArL 537 (861)
T 2zuo_A 459 SYRVPHNAAVQVYDYRAKRARVVFGPELVTLDPE-EQFTVLSLSAGRPKRPHARRALCLLLGPDFFTDVITIETADHARL 537 (861)
T ss_dssp EEECCTTEEEEEECSSSCCEEEECSSCEEECCSS-CEECCEEECCSSSCCTTSEEESSEECSSCEEEEEEEEECTTCCEE
T ss_pred EEEcCCCeEEEEEecCCCceEEEECCcEEEECCC-ccEEEEEecCCCCCCCCceEEEEeeeCCccceEEEEEEEcCceEE
Confidence 4678888888887522233446889999888885 4444444221 11 11 1124789999999
Q ss_pred EEEEEEEEeec---CCCHhHHHHHhccccccccccchHHHHHHHHhhcCChhHHhhchHHHHHH-HHH------------
Q 023988 94 NLTLRVLSRPE---VSRLPYIFQHLGLEYDEKVLPSIGNEVLKAVVAQFNADQLLTERPHVSAL-VRE------------ 157 (274)
Q Consensus 94 ~v~~~v~y~v~---~~~~~~~~~~~g~~~~~~~i~~~~~~~lr~~~~~~~~~ei~~~R~~i~~~-i~~------------ 157 (274)
.+..+.+|... +.++...-.-|...++-.-+-..+.|.+|..+++.+++++..+-..|-.. +.-
T Consensus 538 ~L~LsYnW~F~~~d~~~~~~~~k~Fsv~DFvGd~Ck~iaSriR~aVA~~~Fd~FHknsa~iir~aVFg~~~~~~~~~~~~ 617 (861)
T 2zuo_A 538 QLQLAYNWHFELKNRNDPAEAAKLFSVPDFVGDACKAIASRVRGAVASVTFDDFHKNSARIIRMAVFGFEMSEDTGPDGT 617 (861)
T ss_dssp EEEEEEEEEECCTTTTCHHHHHGGGSSSSHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHSSCCC----------
T ss_pred EEEEEEEEEEeccCCCChhhhhhhccCCchHHHHHHHHHHHHHHHhhcCcHHHHhhhHHHHHHHhhcCCCcccccccccc
Confidence 99888888774 34455444445543333336678899999999999999999764444221 111
Q ss_pred ---HHH--HHhhcCCeEEEEEEEeeccCCHH-HHHHH
Q 023988 158 ---SLI--KRARDFNIVLDDVAITHLSYGAE-FSRAV 188 (274)
Q Consensus 158 ---~l~--~~l~~~Gi~v~~v~I~~i~~p~~-~~~ai 188 (274)
..+ -.+...|+.|.+|.|+++.+-+. .++++
T Consensus 618 ~~~~~~~~~~F~~N~lvitsVDvqsvEpvDqrtrd~L 654 (861)
T 2zuo_A 618 LLPKARDQAVFPQNGLVVSSVDVQSVEPVDQRTRDAL 654 (861)
T ss_dssp ---CCCSCEECTTTCEEEEEEEEEEEEESSHHHHHHH
T ss_pred cccCcccceEEccCCeEEEEEeeeeecccCHHHHHHH
Confidence 011 12456699999999999987654 55555
No 6
>2b5u_A Colicin E3; high resolution colicin E3, ribosome inactivation, ribosome inhibitor, hydrolase; HET: CIT; 2.30A {Escherichia coli} SCOP: b.101.1.1 b.110.1.1 h.4.9.1 PDB: 1jch_A* 1ujw_B* 2ysu_B 1e44_B 2xfz_Y* 2xg1_Y*
Probab=73.14 E-value=11 Score=34.20 Aligned_cols=50 Identities=16% Similarity=0.067 Sum_probs=39.7
Q ss_pred cCCeEEEEEEEeeccCCHHHHHHHHHHHHHHHHH------HHhHHHHHHHHHHHHH
Q 023988 165 DFNIVLDDVAITHLSYGAEFSRAVEQKQVAQQEA------ERSKFVVMKADQERRA 214 (274)
Q Consensus 165 ~~Gi~v~~v~I~~i~~p~~~~~ai~~k~~A~qea------e~a~~~~~~A~~ea~a 214 (274)
.-|++-..|.+.+|-.|.++.+..++...++||. +.|+++.++|++|-..
T Consensus 277 ~Sg~ePlYISvs~ilt~~elkqrqeee~r~~qew~~~hp~~~Aer~~e~a~ael~~ 332 (551)
T 2b5u_A 277 DSGHNAVYVSVSDVLSPDQVKQRQDEENRRQQEWDATHPVEAAERNYERARAELNQ 332 (551)
T ss_dssp GGCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCceEEEEeecCCHHHHHHHHHHHHHHHHHhhhcCcHHHHHHHHHHHHHHHHH
Confidence 3488999999999999999999999888888875 4566666666666544
No 7
>3j20_A 30S ribosomal protein S3AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=46.13 E-value=1.1e+02 Score=24.26 Aligned_cols=81 Identities=12% Similarity=0.102 Sum_probs=55.0
Q ss_pred cccCCCcceEEEEEEEEEeecCCCHhHHHHHhccccccccccchHHHHHHHHhhcCChhHHhhc--hHHHHHHHHHHHHH
Q 023988 84 VSGTKDLQMVNLTLRVLSRPEVSRLPYIFQHLGLEYDEKVLPSIGNEVLKAVVAQFNADQLLTE--RPHVSALVRESLIK 161 (274)
Q Consensus 84 ~~~tkd~~~v~v~~~v~y~v~~~~~~~~~~~~g~~~~~~~i~~~~~~~lr~~~~~~~~~ei~~~--R~~i~~~i~~~l~~ 161 (274)
.+.|+||..+.+.+...-.-. . .......|+....+.+.+.+++.++.|+... .+.++.+|.++.+.
T Consensus 108 dVkT~DGy~lRvf~i~fT~kr-a----------~~sQ~~~IRk~m~eii~~~~~~~~l~e~V~~li~~~i~~eI~k~~k~ 176 (198)
T 3j20_A 108 NITTKDGYKLRVMAMAIAMRR-I----------QTSQERAIRKIMQEIIYKKAEELNFKDFVLESVNGKIAAEIAKEAKK 176 (198)
T ss_dssp EEECTTSCEEEEEEEEEECSS-C----------CCTHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHSHHHHHHHHHHHHH
T ss_pred EEEecCCCEEEEEEEEEEecc-c----------cchhhhHHHHHHHHHHHHHhccCCHHHHHHHHcCChHHHHHHHhhCc
Confidence 367999999988876432211 1 1222344778888999999999999999974 57888888888776
Q ss_pred HhhcCCeEEEEEEE
Q 023988 162 RARDFNIVLDDVAI 175 (274)
Q Consensus 162 ~l~~~Gi~v~~v~I 175 (274)
..-=..++|.-+.+
T Consensus 177 IyPl~~V~IrKvKv 190 (198)
T 3j20_A 177 IYPLRKAEIRKIKV 190 (198)
T ss_dssp HSCEEEEEEEEEEE
T ss_pred ccccceEEEEEEEE
Confidence 65433344444443
No 8
>2acm_B Mucin-1; auto-catalytic proteolysis, structural protein; NMR {Homo sapiens}
Probab=42.59 E-value=24 Score=21.81 Aligned_cols=21 Identities=19% Similarity=0.551 Sum_probs=14.4
Q ss_pred hhcCCeEEEEEEEeeccCCHH
Q 023988 163 ARDFNIVLDDVAITHLSYGAE 183 (274)
Q Consensus 163 l~~~Gi~v~~v~I~~i~~p~~ 183 (274)
...|.+.|.+|.++|+.+|..
T Consensus 32 ~~~YnL~IS~vsV~dv~FPsS 52 (55)
T 2acm_B 32 ASRYNLTISDVSVSDVPFPFS 52 (55)
T ss_dssp HHHHCCCEEEEEEECC-----
T ss_pred cccccceecceeEEeccCCCc
Confidence 448899999999999999854
No 9
>2xzm_4 40S ribosomal protein S3A; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_4
Probab=35.00 E-value=34 Score=28.49 Aligned_cols=76 Identities=5% Similarity=0.032 Sum_probs=47.4
Q ss_pred cccCCCcceEEEEEEEEEeecC---CCHh-HHHHHhccccccccccchHHHHHHHHhhcCChhHHhhc--hHHHHHHHHH
Q 023988 84 VSGTKDLQMVNLTLRVLSRPEV---SRLP-YIFQHLGLEYDEKVLPSIGNEVLKAVVAQFNADQLLTE--RPHVSALVRE 157 (274)
Q Consensus 84 ~~~tkd~~~v~v~~~v~y~v~~---~~~~-~~~~~~g~~~~~~~i~~~~~~~lr~~~~~~~~~ei~~~--R~~i~~~i~~ 157 (274)
.+.|+||..+.+.+...-+-++ .... ..|. .......|+..+.+.+.+.+++.++.|+... .+.|..+|..
T Consensus 129 dVkT~DGY~lRvf~i~fT~kr~~~~~q~kkt~Ya---~~SQir~IRkkm~eii~~~~~~~dl~e~V~kli~~~i~keI~k 205 (265)
T 2xzm_4 129 DCKTNDGYIIRVFTLAFTKKTSAGKQSSTSTCYA---KSSQVRAIRRKINTFITNEAAKLGIAEFSKNLIGEDYTKKIEK 205 (265)
T ss_dssp EEEETTTEEEEEEEEEEECCCSSCCSCSSCCBCC---THHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHTTHHHHHHHH
T ss_pred EEEeCCCcEEEEEEEEEEecccccccccceeeec---cccchHHHHHHHHHHHHHHhhhCCHHHHHHHHccchHHHHHHH
Confidence 3679999999988765433222 1110 0111 1122344788888899999999999999973 4556666655
Q ss_pred HHHHH
Q 023988 158 SLIKR 162 (274)
Q Consensus 158 ~l~~~ 162 (274)
..+..
T Consensus 206 ~~k~I 210 (265)
T 2xzm_4 206 ETKNI 210 (265)
T ss_dssp HHTTT
T ss_pred Hhhhc
Confidence 55433
No 10
>1q90_R Cytochrome B6-F complex iron-sulfur subunit; membrane protein complex, photosynthesis, electron transfer, oxydoreductase, chlorophyll; HET: HEM CL1 BCR TDS SQD LFA LMG; 3.10A {Chlamydomonas reinhardtii} SCOP: f.23.12.1
Probab=28.86 E-value=23 Score=21.40 Aligned_cols=33 Identities=15% Similarity=0.149 Sum_probs=17.3
Q ss_pred HhHHHHHHHHHHHHHHHHHHhhccEEEecCCeE
Q 023988 8 VSFLTNIARAAFGLGAAATVLNSSLYTVDGGER 40 (274)
Q Consensus 8 ~~~m~~~~~~~~~~~~~~~~~~~~~~~V~~ge~ 40 (274)
=+||+.+..-.+.++.+..+.....|.|+|...
T Consensus 12 Rqfln~l~~G~~a~~a~~~~~P~v~ffvpP~~g 44 (49)
T 1q90_R 12 RNIMNLILAGGAGLPITTLALGYGAFFVPPSSG 44 (49)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHSCC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhheeecCCccC
Confidence 467887766555555444444444555666543
No 11
>3bk6_A PH stomatin; archaea, trimer, coiled- coil, flotillin, SPFH, membrane fusion, trafficking, transmembrane, membrane protein; 3.20A {Pyrococcus horikoshii}
Probab=28.67 E-value=2e+02 Score=22.00 Aligned_cols=70 Identities=17% Similarity=0.202 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHHHhh--cCCeEEEEEEEeeccCCHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 023988 150 HVSALVRESLIKRAR--DFNIVLDDVAITHLSYGAEFSRAVEQKQVAQQEAERSKFVVMKADQERRAAQLISEA 221 (274)
Q Consensus 150 ~i~~~i~~~l~~~l~--~~Gi~v~~v~I~~i~~p~~~~~ai~~k~~A~qeae~a~~~~~~A~~ea~aa~~~~~a 221 (274)
++.+.+.+.+.. +. =..+.|.++.+.+ .+-+.+.+.++....++....+|+.+...++..+++++.++++
T Consensus 88 ~i~~~l~~~~~~-~GI~v~~v~I~~i~~p~-ev~~a~~~~~~Aere~~A~i~~Aege~~a~~~~a~a~~~~~~~ 159 (188)
T 3bk6_A 88 QLQRIIDEATDP-WGIKVTAVEIKDVELPA-GMQKAMARQAEAERERRARITLAEAERQAAEKLREAAEIISEH 159 (188)
T ss_dssp HHHHHHHHHTGG-GTEEEEEEEEEEEEEET-THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHh-cCeEEEEEEEEecCCCH-HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhC
Confidence 344445555543 33 3367888888764 5667777777777777777777777777777777777776543
No 12
>3bz1_X Photosystem II PSBX protein; electron transport photosystem, membrane complex, transmembrane alpha-helix; HET: CLA PHO HEM PL9 BCR DGD LHG SQD LMG LMT; 2.90A {Thermosynechococcus elongatus} PDB: 1s5l_X* 3bz2_X*
Probab=24.96 E-value=1e+02 Score=18.51 Aligned_cols=22 Identities=18% Similarity=0.309 Sum_probs=13.9
Q ss_pred CCcchhhHhHHHHHHHHHHHHH
Q 023988 1 MGSSQAAVSFLTNIARAAFGLG 22 (274)
Q Consensus 1 ~~~~~~~~~~m~~~~~~~~~~~ 22 (274)
++.+|....|+..+++-+++++
T Consensus 10 ~~mTpSL~NFl~SlvaG~vVvv 31 (50)
T 3bz1_X 10 LTITPSLKGFFIGLLSGAVVLG 31 (50)
T ss_dssp -CCCHHHHHHHHHHHHHHHHHH
T ss_pred hhcCHHHHHHHHHHHHHHHHHH
Confidence 4567777778887766554443
Done!