BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 023989
(274 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|356550683|ref|XP_003543714.1| PREDICTED: putative DNA repair protein RAD23-1-like isoform 2
[Glycine max]
Length = 353
Score = 364 bits (935), Expect = 2e-98, Method: Compositional matrix adjust.
Identities = 189/264 (71%), Positives = 207/264 (78%), Gaps = 24/264 (9%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
MKLTVKTLKGSHFEIRVQPSDT+MAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTL+
Sbjct: 1 MKLTVKTLKGSHFEIRVQPSDTIMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLS 60
Query: 61 DNKVSEDGFLVVMLSKSKTLGSAGASSAQPAHTTPPTTAPSSNSTPPQEASVPPPAPTPS 120
DNKVSEDGFLVVMLSK KTLGSAG SS Q PPTT + NSTP
Sbjct: 61 DNKVSEDGFLVVMLSKGKTLGSAGISSTQACCFNPPTTVSTPNSTP-------------- 106
Query: 121 IPASNVTSNVTAANANSDTYGQAASNLVAGNDLEQTIQQIMDMGGGTWDKETVTRALQAA 180
+ +VT+N TYGQAASNLVAG++LEQTIQQ+MDMGGG+WD++TVT AL+AA
Sbjct: 107 LVQPHVTTN---------TYGQAASNLVAGSNLEQTIQQLMDMGGGSWDRDTVTCALRAA 157
Query: 181 YNNPERAVDYLYSGIPETAEVAVPVAHFPASQAAETGAAGAAPVSGVPNSSPLNMFPQET 240
YNNPERAVDYLYSGIP AE+AVP A +P SQ ETG A V GVPNSSPLNMFPQET
Sbjct: 158 YNNPERAVDYLYSGIPVAAEIAVPAASYPISQTTETGGASVGAVPGVPNSSPLNMFPQET 217
Query: 241 LSGAPAGGLGSLDFLRNNQQVWSL 264
+SGA A +GSLDFLRNN Q +L
Sbjct: 218 ISGAGA-EIGSLDFLRNNPQFQAL 240
>gi|358249346|ref|NP_001240038.1| uncharacterized protein LOC100819019 [Glycine max]
gi|255647960|gb|ACU24437.1| unknown [Glycine max]
Length = 363
Score = 363 bits (931), Expect = 5e-98, Method: Compositional matrix adjust.
Identities = 192/264 (72%), Positives = 214/264 (81%), Gaps = 14/264 (5%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTL
Sbjct: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLV 60
Query: 61 DNKVSEDGFLVVMLSKSKTLGSAGASSAQPAHTTPPTTAPSSNSTPPQEASVPPPAPTPS 120
+NKVSEDGFLVVMLSKSKT GSA ASS QPA + PPTT +SNSTPP + PP T +
Sbjct: 61 ENKVSEDGFLVVMLSKSKTSGSAAASSVQPA-SNPPTTVSTSNSTPPSD----PPVQTQA 115
Query: 121 IPASNVTSNVTAANANSDTYGQAASNLVAGNDLEQTIQQIMDMGGGTWDKETVTRALQAA 180
S +++ N ++DTYG AASNLVAG++LEQTIQQIMDMGGG WD++TV+RAL+AA
Sbjct: 116 ANNSTSSTDAPTTNVSADTYGLAASNLVAGSNLEQTIQQIMDMGGGNWDRDTVSRALRAA 175
Query: 181 YNNPERAVDYLYSGIPETAEVAVPVAHFPASQAAETGAAGAAPVSGVPNSSPLNMFPQET 240
YNNPERA+DYLYSGIPE AEVAVPV P + ++GA PV PNSSPLNMFPQET
Sbjct: 176 YNNPERAIDYLYSGIPEAAEVAVPV---PQTAGI---SSGAVPVG--PNSSPLNMFPQET 227
Query: 241 LSGAPAGGLGSLDFLRNNQQVWSL 264
+S A GLGSLDFLRNN Q +L
Sbjct: 228 ISSTGA-GLGSLDFLRNNPQFQAL 250
>gi|255641364|gb|ACU20959.1| unknown [Glycine max]
Length = 363
Score = 363 bits (931), Expect = 6e-98, Method: Compositional matrix adjust.
Identities = 192/264 (72%), Positives = 214/264 (81%), Gaps = 14/264 (5%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTL
Sbjct: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLV 60
Query: 61 DNKVSEDGFLVVMLSKSKTLGSAGASSAQPAHTTPPTTAPSSNSTPPQEASVPPPAPTPS 120
+NKVSEDGFLVVMLSKSKT GSA ASS QPA + PPTT +SNSTPP + PP T +
Sbjct: 61 ENKVSEDGFLVVMLSKSKTSGSAAASSVQPA-SNPPTTVSTSNSTPPSD----PPVQTQA 115
Query: 121 IPASNVTSNVTAANANSDTYGQAASNLVAGNDLEQTIQQIMDMGGGTWDKETVTRALQAA 180
S +++ N ++DTYG AASNLVAG++LEQTIQQIMDMGGG WD++TV+RAL+AA
Sbjct: 116 ANNSTSSTDAPTTNVSADTYGLAASNLVAGSNLEQTIQQIMDMGGGNWDRDTVSRALRAA 175
Query: 181 YNNPERAVDYLYSGIPETAEVAVPVAHFPASQAAETGAAGAAPVSGVPNSSPLNMFPQET 240
YNNPERA+DYLYSGIPE AEVAVPV P + ++GA PV PNSSPLNMFPQET
Sbjct: 176 YNNPERAIDYLYSGIPEAAEVAVPV---PQTAGI---SSGAVPVG--PNSSPLNMFPQET 227
Query: 241 LSGAPAGGLGSLDFLRNNQQVWSL 264
+S A GLGSLDFLRNN Q +L
Sbjct: 228 ISSTGA-GLGSLDFLRNNPQFQAL 250
>gi|356550681|ref|XP_003543713.1| PREDICTED: putative DNA repair protein RAD23-1-like isoform 1
[Glycine max]
Length = 367
Score = 360 bits (923), Expect = 4e-97, Method: Compositional matrix adjust.
Identities = 194/267 (72%), Positives = 215/267 (80%), Gaps = 16/267 (5%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
MKLTVKTLKGSHFEIRVQPSDT+MAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTL+
Sbjct: 1 MKLTVKTLKGSHFEIRVQPSDTIMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLS 60
Query: 61 DNKVSEDGFLVVMLSKSKTLGSAGASSAQPAHTTPPTTAPSSNSTP---PQEASVPPPAP 117
DNKVSEDGFLVVMLSK KTLGSAG SS Q A + PPTT + NSTP PQ A+ A
Sbjct: 61 DNKVSEDGFLVVMLSKGKTLGSAGISSTQFA-SNPPTTVSTPNSTPLVQPQSANNNASA- 118
Query: 118 TPSIPASNVTSNVTAANANSDTYGQAASNLVAGNDLEQTIQQIMDMGGGTWDKETVTRAL 177
++VT N ++TYGQAASNLVAG++LEQTIQQ+MDMGGG+WD++TVT AL
Sbjct: 119 ----------TDVTTTNVTTNTYGQAASNLVAGSNLEQTIQQLMDMGGGSWDRDTVTCAL 168
Query: 178 QAAYNNPERAVDYLYSGIPETAEVAVPVAHFPASQAAETGAAGAAPVSGVPNSSPLNMFP 237
+AAYNNPERAVDYLYSGIP AE+AVP A +P SQ ETG A V GVPNSSPLNMFP
Sbjct: 169 RAAYNNPERAVDYLYSGIPVAAEIAVPAASYPISQTTETGGASVGAVPGVPNSSPLNMFP 228
Query: 238 QETLSGAPAGGLGSLDFLRNNQQVWSL 264
QET+SGA A +GSLDFLRNN Q +L
Sbjct: 229 QETISGAGA-EIGSLDFLRNNPQFQAL 254
>gi|356521678|ref|XP_003529480.1| PREDICTED: putative DNA repair protein RAD23-1-like isoform 1
[Glycine max]
Length = 363
Score = 359 bits (922), Expect = 6e-97, Method: Compositional matrix adjust.
Identities = 190/264 (71%), Positives = 210/264 (79%), Gaps = 14/264 (5%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTL
Sbjct: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLV 60
Query: 61 DNKVSEDGFLVVMLSKSKTLGSAGASSAQPAHTTPPTTAPSSNSTPPQEASVPPPAPTPS 120
+NKVSEDGFLVVMLSKSKT GSA ASS QPA + P TT SNSTPP + PP T +
Sbjct: 61 ENKVSEDGFLVVMLSKSKTSGSAAASSVQPA-SNPATTVSMSNSTPPSD----PPVQTQA 115
Query: 121 IPASNVTSNVTAANANSDTYGQAASNLVAGNDLEQTIQQIMDMGGGTWDKETVTRALQAA 180
S +++ N ++DTYG AASNLVAG++LEQTIQQIMDMGGG WD++TV+RAL+AA
Sbjct: 116 ANNSTSSTDAPTTNVSADTYGLAASNLVAGSNLEQTIQQIMDMGGGNWDRDTVSRALRAA 175
Query: 181 YNNPERAVDYLYSGIPETAEVAVPVAHFPASQAAETGAAGAAPVSGVPNSSPLNMFPQET 240
YNNPERA+DYLYSGIPE AEVAVPV ++GA PV PNSSPLNMFPQET
Sbjct: 176 YNNPERAIDYLYSGIPEAAEVAVPVPQTAGM------SSGAVPVG--PNSSPLNMFPQET 227
Query: 241 LSGAPAGGLGSLDFLRNNQQVWSL 264
+S A GLGSLDFLRNN Q +L
Sbjct: 228 ISSTGA-GLGSLDFLRNNPQFQAL 250
>gi|356521680|ref|XP_003529481.1| PREDICTED: putative DNA repair protein RAD23-1-like isoform 2
[Glycine max]
Length = 343
Score = 359 bits (921), Expect = 8e-97, Method: Compositional matrix adjust.
Identities = 193/274 (70%), Positives = 212/274 (77%), Gaps = 14/274 (5%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTL
Sbjct: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLV 60
Query: 61 DNKVSEDGFLVVMLSKSKTLGSAGASSAQPAHTTPPTTAPSSNSTPPQEASVPPPAPTPS 120
+NKVSEDGFLVVMLSKSKT GSA ASS QPA + P TT SNSTPP + PP T +
Sbjct: 61 ENKVSEDGFLVVMLSKSKTSGSAAASSVQPA-SNPATTVSMSNSTPPSD----PPVQTQA 115
Query: 121 IPASNVTSNVTAANANSDTYGQAASNLVAGNDLEQTIQQIMDMGGGTWDKETVTRALQAA 180
S +++ N ++DTYG AASNLVAG++LEQTIQQIMDMGGG WD++TV+RAL+AA
Sbjct: 116 ANNSTSSTDAPTTNVSADTYGLAASNLVAGSNLEQTIQQIMDMGGGNWDRDTVSRALRAA 175
Query: 181 YNNPERAVDYLYSGIPETAEVAVPVAHFPASQAAETGAAGAAPVSGVPNSSPLNMFPQET 240
YNNPERA+DYLYSGIPE AEVAVPV ++GA PV PNSSPLNMFPQET
Sbjct: 176 YNNPERAIDYLYSGIPEAAEVAVPVPQTAGM------SSGAVPVG--PNSSPLNMFPQET 227
Query: 241 LSGAPAGGLGSLDFLRNNQQVWSLLCCQLLFLFQ 274
+S A GLGSLDFLRNN Q LL L Q
Sbjct: 228 ISSTGA-GLGSLDFLRNNPQELGKQNPGLLRLIQ 260
>gi|297842761|ref|XP_002889262.1| hypothetical protein ARALYDRAFT_316857 [Arabidopsis lyrata subsp.
lyrata]
gi|297335103|gb|EFH65521.1| hypothetical protein ARALYDRAFT_316857 [Arabidopsis lyrata subsp.
lyrata]
Length = 365
Score = 351 bits (900), Expect = 2e-94, Method: Compositional matrix adjust.
Identities = 181/264 (68%), Positives = 210/264 (79%), Gaps = 14/264 (5%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
MKLTVKTLKGSHFEIRV PSDT+MAVKKNIED QGK+NYPCGQQLLIHNGKVLKDET+L
Sbjct: 1 MKLTVKTLKGSHFEIRVLPSDTIMAVKKNIEDSQGKNNYPCGQQLLIHNGKVLKDETSLV 60
Query: 61 DNKVSEDGFLVVMLSKSKTLGSAGASSAQPAHTTPPTTAPSSNSTPPQEASVPPPAPTPS 120
+NKV+E+GFLVVMLSKSKT GSAG SS QPA T +T P + ST + +
Sbjct: 61 ENKVTEEGFLVVMLSKSKTAGSAGQSSVQPASATTSSTKPETPST----------TQSIA 110
Query: 121 IPASNVTSNVTAANANSDTYGQAASNLVAGNDLEQTIQQIMDMGGGTWDKETVTRALQAA 180
+PAS +T+ A A +DTYGQAAS LV+G+ LEQ +QQIM+MGGG+WDKETVTRAL+AA
Sbjct: 111 VPASPITAQEQPA-AQTDTYGQAASTLVSGSSLEQMVQQIMEMGGGSWDKETVTRALRAA 169
Query: 181 YNNPERAVDYLYSGIPETAEVAVPVAHFPASQAAETGAAGAAPVSGVPNSSPLNMFPQET 240
YNNPERAVDYLYSGIPETAEVAV V P +Q A +GAA AP SG PNSSPL++FPQET
Sbjct: 170 YNNPERAVDYLYSGIPETAEVAVAV---PGAQMAGSGAAPVAPASGGPNSSPLDLFPQET 226
Query: 241 LSGAPAGGLGSLDFLRNNQQVWSL 264
++ A +G LG+L+FLRNN Q L
Sbjct: 227 VAAAGSGDLGTLEFLRNNDQFQQL 250
>gi|42572181|ref|NP_974181.1| putative DNA repair protein RAD23-1 [Arabidopsis thaliana]
gi|332198159|gb|AEE36280.1| putative DNA repair protein RAD23-1 [Arabidopsis thaliana]
Length = 351
Score = 350 bits (899), Expect = 3e-94, Method: Compositional matrix adjust.
Identities = 181/274 (66%), Positives = 216/274 (78%), Gaps = 8/274 (2%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
MKLTVKTLKGSHFEIRV PSDT+MAVKKNIED QGKDNYPCGQQLLIHNGKVLKDET+L
Sbjct: 1 MKLTVKTLKGSHFEIRVLPSDTIMAVKKNIEDSQGKDNYPCGQQLLIHNGKVLKDETSLV 60
Query: 61 DNKVSEDGFLVVMLSKSKTLGSAGASSAQPAHTTPPTTAPSSNSTPPQEASVPPPAPTPS 120
+NKV+E+GFLVVMLSKSK+ GSAG +S Q + + P +A +S++ P + P +
Sbjct: 61 ENKVTEEGFLVVMLSKSKSGGSAGQASVQTSSVSQPVSATTSSTKP----AAPSTTQSSP 116
Query: 121 IPASNVTSNVTAANANSDTYGQAASNLVAGNDLEQTIQQIMDMGGGTWDKETVTRALQAA 180
+PAS + + A A +DTYGQAAS LV+G+ LEQ +QQIM+MGGG+WDKETVTRAL+AA
Sbjct: 117 VPASPIPAQEQPA-AQTDTYGQAASTLVSGSSLEQMVQQIMEMGGGSWDKETVTRALRAA 175
Query: 181 YNNPERAVDYLYSGIPETAEVAVPVAHFPASQAAETGAAGAAPVSGVPNSSPLNMFPQET 240
YNNPERAVDYLYSGIP+TAEVAVPV P +Q A +GAA AP SG PNSSPL++FPQET
Sbjct: 176 YNNPERAVDYLYSGIPQTAEVAVPV---PEAQIAGSGAAPVAPASGGPNSSPLDLFPQET 232
Query: 241 LSGAPAGGLGSLDFLRNNQQVWSLLCCQLLFLFQ 274
++ A +G LG+L+FLRNN Q QLL L Q
Sbjct: 233 VAAAGSGDLGTLEFLRNNDQELGKQNPQLLRLIQ 266
>gi|356521682|ref|XP_003529482.1| PREDICTED: putative DNA repair protein RAD23-1-like isoform 3
[Glycine max]
Length = 348
Score = 350 bits (898), Expect = 4e-94, Method: Compositional matrix adjust.
Identities = 188/264 (71%), Positives = 205/264 (77%), Gaps = 29/264 (10%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTL
Sbjct: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLV 60
Query: 61 DNKVSEDGFLVVMLSKSKTLGSAGASSAQPAHTTPPTTAPSSNSTPPQEASVPPPAPTPS 120
+NKVSEDGFLVVMLSKSKT GSA ASS QPA + P TT SNSTPP + PP T
Sbjct: 61 ENKVSEDGFLVVMLSKSKTSGSAAASSVQPA-SNPATTVSMSNSTPPSD----PPVQT-- 113
Query: 121 IPASNVTSNVTAANANSDTYGQAASNLVAGNDLEQTIQQIMDMGGGTWDKETVTRALQAA 180
+ ++DTYG AASNLVAG++LEQTIQQIMDMGGG WD++TV+RAL+AA
Sbjct: 114 -------------HVSADTYGLAASNLVAGSNLEQTIQQIMDMGGGNWDRDTVSRALRAA 160
Query: 181 YNNPERAVDYLYSGIPETAEVAVPVAHFPASQAAETGAAGAAPVSGVPNSSPLNMFPQET 240
YNNPERA+DYLYSGIPE AEVAVPV ++GA PV PNSSPLNMFPQET
Sbjct: 161 YNNPERAIDYLYSGIPEAAEVAVPVPQTAGM------SSGAVPVG--PNSSPLNMFPQET 212
Query: 241 LSGAPAGGLGSLDFLRNNQQVWSL 264
+S A GLGSLDFLRNN Q +L
Sbjct: 213 ISSTGA-GLGSLDFLRNNPQFQAL 235
>gi|30409720|dbj|BAC76390.1| RAD23-like protein [Arabidopsis thaliana]
Length = 365
Score = 348 bits (894), Expect = 1e-93, Method: Compositional matrix adjust.
Identities = 179/264 (67%), Positives = 209/264 (79%), Gaps = 14/264 (5%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
MKLTVKTLKGSHFEIRV PSDT+MAVKKNIED QGKDNYPCGQQLLIHNGKVLKDET+L
Sbjct: 1 MKLTVKTLKGSHFEIRVLPSDTIMAVKKNIEDSQGKDNYPCGQQLLIHNGKVLKDETSLV 60
Query: 61 DNKVSEDGFLVVMLSKSKTLGSAGASSAQPAHTTPPTTAPSSNSTPPQEASVPPPAPTPS 120
+NKV+E+GFLVVMLSKSK+ GSAG +S QP T +T P++ ST + P P
Sbjct: 61 ENKVTEEGFLVVMLSKSKSGGSAGQASVQPVSATTSSTKPAAPST-----TQSSPVPASP 115
Query: 121 IPASNVTSNVTAANANSDTYGQAASNLVAGNDLEQTIQQIMDMGGGTWDKETVTRALQAA 180
IPA + A +DTYGQAAS LV+G+ LEQ +QQIM+MGGG+WDKETVTRAL+AA
Sbjct: 116 IPAQEQPA------AQTDTYGQAASTLVSGSSLEQMVQQIMEMGGGSWDKETVTRALRAA 169
Query: 181 YNNPERAVDYLYSGIPETAEVAVPVAHFPASQAAETGAAGAAPVSGVPNSSPLNMFPQET 240
YNNPERAVDYLYSGIP+TAEVAVPV P +Q A +GAA AP SG PNSSPL++FPQET
Sbjct: 170 YNNPERAVDYLYSGIPQTAEVAVPV---PEAQIAGSGAAPVAPASGGPNSSPLDLFPQET 226
Query: 241 LSGAPAGGLGSLDFLRNNQQVWSL 264
++ A +G LG+L+FLRNN Q+ L
Sbjct: 227 VAAAGSGDLGTLEFLRNNDQLEQL 250
>gi|22330746|ref|NP_565216.2| putative DNA repair protein RAD23-1 [Arabidopsis thaliana]
gi|14334442|gb|AAK59419.1| putative DNA repair protein RAD23 [Arabidopsis thaliana]
gi|17104777|gb|AAL34277.1| putative DNA repair protein RAD23 [Arabidopsis thaliana]
gi|332198158|gb|AEE36279.1| putative DNA repair protein RAD23-1 [Arabidopsis thaliana]
Length = 365
Score = 348 bits (893), Expect = 1e-93, Method: Compositional matrix adjust.
Identities = 179/264 (67%), Positives = 208/264 (78%), Gaps = 14/264 (5%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
MKLTVKTLKGSHFEIRV PSDT+MAVKKNIED QGKDNYPCGQQLLIHNGKVLKDET+L
Sbjct: 1 MKLTVKTLKGSHFEIRVLPSDTIMAVKKNIEDSQGKDNYPCGQQLLIHNGKVLKDETSLV 60
Query: 61 DNKVSEDGFLVVMLSKSKTLGSAGASSAQPAHTTPPTTAPSSNSTPPQEASVPPPAPTPS 120
+NKV+E+GFLVVMLSKSK+ GSAG +S QP T +T P++ ST + P P
Sbjct: 61 ENKVTEEGFLVVMLSKSKSGGSAGQASVQPVSATTSSTKPAAPST-----TQSSPVPASP 115
Query: 121 IPASNVTSNVTAANANSDTYGQAASNLVAGNDLEQTIQQIMDMGGGTWDKETVTRALQAA 180
IPA + A +DTYGQAAS LV+G+ LEQ +QQIM+MGGG+WDKETVTRAL+AA
Sbjct: 116 IPAQEQPA------AQTDTYGQAASTLVSGSSLEQMVQQIMEMGGGSWDKETVTRALRAA 169
Query: 181 YNNPERAVDYLYSGIPETAEVAVPVAHFPASQAAETGAAGAAPVSGVPNSSPLNMFPQET 240
YNNPERAVDYLYSGIP+TAEVAVPV P +Q A +GAA AP SG PNSSPL++FPQET
Sbjct: 170 YNNPERAVDYLYSGIPQTAEVAVPV---PEAQIAGSGAAPVAPASGGPNSSPLDLFPQET 226
Query: 241 LSGAPAGGLGSLDFLRNNQQVWSL 264
++ A +G LG+L+FLRNN Q L
Sbjct: 227 VAAAGSGDLGTLEFLRNNDQFQQL 250
>gi|30409718|dbj|BAC76389.1| RAD23-like protein [Arabidopsis thaliana]
Length = 371
Score = 348 bits (893), Expect = 1e-93, Method: Compositional matrix adjust.
Identities = 177/264 (67%), Positives = 213/264 (80%), Gaps = 8/264 (3%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
MKLTVKTLKGSHFEIRV PSDT+MAVKKNIED QGKDNYPCGQQLLIHNGKVLKDET+L
Sbjct: 1 MKLTVKTLKGSHFEIRVLPSDTIMAVKKNIEDSQGKDNYPCGQQLLIHNGKVLKDETSLV 60
Query: 61 DNKVSEDGFLVVMLSKSKTLGSAGASSAQPAHTTPPTTAPSSNSTPPQEASVPPPAPTPS 120
+NKV+E+GFLVVMLSKSK+ GSAG +S Q + + P +A +S++ P + P +
Sbjct: 61 ENKVTEEGFLVVMLSKSKSGGSAGQASVQTSSVSQPVSATTSSTKP----AAPSTTQSSP 116
Query: 121 IPASNVTSNVTAANANSDTYGQAASNLVAGNDLEQTIQQIMDMGGGTWDKETVTRALQAA 180
+PAS + + A A +DTYGQAAS LV+G+ LEQ +QQIM+MGGG+WDKETVTRAL+AA
Sbjct: 117 VPASPIPAQEQPA-AQTDTYGQAASTLVSGSSLEQMVQQIMEMGGGSWDKETVTRALRAA 175
Query: 181 YNNPERAVDYLYSGIPETAEVAVPVAHFPASQAAETGAAGAAPVSGVPNSSPLNMFPQET 240
YNNPERAVDYLYSGIP+TAEVAVPV P +Q A +GAA AP SG PNSSPL++FPQET
Sbjct: 176 YNNPERAVDYLYSGIPQTAEVAVPV---PEAQIAGSGAAPVAPASGGPNSSPLDLFPQET 232
Query: 241 LSGAPAGGLGSLDFLRNNQQVWSL 264
++ A +G LG+L+FLRNN Q+ L
Sbjct: 233 VAAAGSGDLGTLEFLRNNDQLEQL 256
>gi|110735098|gb|ABG89119.1| Rad23-3Ai [synthetic construct]
Length = 365
Score = 347 bits (891), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 179/264 (67%), Positives = 208/264 (78%), Gaps = 14/264 (5%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
MKLTVKTLKGSHFEIRV PSDT+MAVKKNIED QGKDNYPCGQQLLIHNGKVLKDET+L
Sbjct: 1 MKLTVKTLKGSHFEIRVLPSDTIMAVKKNIEDSQGKDNYPCGQQLLIHNGKVLKDETSLV 60
Query: 61 DNKVSEDGFLVVMLSKSKTLGSAGASSAQPAHTTPPTTAPSSNSTPPQEASVPPPAPTPS 120
+NKV+E+GFLVVMLSKSK+ GSAG +S QP T +T P++ ST + P P
Sbjct: 61 ENKVTEEGFLVVMLSKSKSGGSAGQASVQPVSATTSSTNPAAPST-----TQSSPVPASP 115
Query: 121 IPASNVTSNVTAANANSDTYGQAASNLVAGNDLEQTIQQIMDMGGGTWDKETVTRALQAA 180
IPA + A +DTYGQAAS LV+G+ LEQ +QQIM+MGGG+WDKETVTRAL+AA
Sbjct: 116 IPAQEQPA------AQTDTYGQAASTLVSGSSLEQMVQQIMEMGGGSWDKETVTRALRAA 169
Query: 181 YNNPERAVDYLYSGIPETAEVAVPVAHFPASQAAETGAAGAAPVSGVPNSSPLNMFPQET 240
YNNPERAVDYLYSGIP+TAEVAVPV P +Q A +GAA AP SG PNSSPL++FPQET
Sbjct: 170 YNNPERAVDYLYSGIPQTAEVAVPV---PEAQIAGSGAAPVAPASGGPNSSPLDLFPQET 226
Query: 241 LSGAPAGGLGSLDFLRNNQQVWSL 264
++ A +G LG+L+FLRNN Q L
Sbjct: 227 VAAAGSGDLGTLEFLRNNDQFQQL 250
>gi|30699439|ref|NP_850982.1| putative DNA repair protein RAD23-1 [Arabidopsis thaliana]
gi|73620991|sp|Q84L33.3|RD23A_ARATH RecName: Full=Putative DNA repair protein RAD23-1; AltName:
Full=RAD23-like protein 1; Short=AtRAD23-1
gi|21593616|gb|AAM65583.1| DNA repair protein RAD23, putative [Arabidopsis thaliana]
gi|110735096|gb|ABG89118.1| Rad23-3Aii [synthetic construct]
gi|332198160|gb|AEE36281.1| putative DNA repair protein RAD23-1 [Arabidopsis thaliana]
Length = 371
Score = 347 bits (891), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 177/264 (67%), Positives = 212/264 (80%), Gaps = 8/264 (3%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
MKLTVKTLKGSHFEIRV PSDT+MAVKKNIED QGKDNYPCGQQLLIHNGKVLKDET+L
Sbjct: 1 MKLTVKTLKGSHFEIRVLPSDTIMAVKKNIEDSQGKDNYPCGQQLLIHNGKVLKDETSLV 60
Query: 61 DNKVSEDGFLVVMLSKSKTLGSAGASSAQPAHTTPPTTAPSSNSTPPQEASVPPPAPTPS 120
+NKV+E+GFLVVMLSKSK+ GSAG +S Q + + P +A +S++ P + P +
Sbjct: 61 ENKVTEEGFLVVMLSKSKSGGSAGQASVQTSSVSQPVSATTSSTKP----AAPSTTQSSP 116
Query: 121 IPASNVTSNVTAANANSDTYGQAASNLVAGNDLEQTIQQIMDMGGGTWDKETVTRALQAA 180
+PAS + + A A +DTYGQAAS LV+G+ LEQ +QQIM+MGGG+WDKETVTRAL+AA
Sbjct: 117 VPASPIPAQEQPA-AQTDTYGQAASTLVSGSSLEQMVQQIMEMGGGSWDKETVTRALRAA 175
Query: 181 YNNPERAVDYLYSGIPETAEVAVPVAHFPASQAAETGAAGAAPVSGVPNSSPLNMFPQET 240
YNNPERAVDYLYSGIP+TAEVAVPV P +Q A +GAA AP SG PNSSPL++FPQET
Sbjct: 176 YNNPERAVDYLYSGIPQTAEVAVPV---PEAQIAGSGAAPVAPASGGPNSSPLDLFPQET 232
Query: 241 LSGAPAGGLGSLDFLRNNQQVWSL 264
++ A +G LG+L+FLRNN Q L
Sbjct: 233 VAAAGSGDLGTLEFLRNNDQFQQL 256
>gi|255543415|ref|XP_002512770.1| uv excision repair protein rad23, putative [Ricinus communis]
gi|223547781|gb|EEF49273.1| uv excision repair protein rad23, putative [Ricinus communis]
Length = 359
Score = 347 bits (889), Expect = 4e-93, Method: Compositional matrix adjust.
Identities = 212/267 (79%), Positives = 221/267 (82%), Gaps = 24/267 (8%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
MKLTVKTLKGSHFEIRVQP+DTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA
Sbjct: 1 MKLTVKTLKGSHFEIRVQPNDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
Query: 61 DNKVSEDGFLVVMLSKSKTLGSAGASSAQPAHTTPPTTAPSSNSTPPQEASVPPPAPTPS 120
DNKV+EDGFLVVMLSKSKT GS+G SS QPA TPPTTAPSSNSTP E V PP T
Sbjct: 61 DNKVTEDGFLVVMLSKSKTSGSSGTSSTQPAAATPPTTAPSSNSTPAVE--VQPPTQT-- 116
Query: 121 IPASNVTSNVTAANANSDTYGQAASNLVAGNDLEQTIQQIMDMGGGTWDKETVTRALQAA 180
DTYG+AASNLVAG++LEQTIQQIMDMGGGTWDKETVTRAL+AA
Sbjct: 117 -----------------DTYGEAASNLVAGDNLEQTIQQIMDMGGGTWDKETVTRALRAA 159
Query: 181 YNNPERAVDYLYSGIPETAEVAVPVAHFPASQAAETGAAGAAPVSGVPNSSPLNMFPQE- 239
YNNPERAVDYLYSGIPETAEVAVPVAH PA QA ETGAA AAP+SGVPNSSPLNMFPQE
Sbjct: 160 YNNPERAVDYLYSGIPETAEVAVPVAHLPAGQATETGAAPAAPLSGVPNSSPLNMFPQEA 219
Query: 240 --TLSGAPAGGLGSLDFLRNNQQVWSL 264
G AGGLGSLDFLRNN Q +L
Sbjct: 220 LSAAGGGSAGGLGSLDFLRNNAQFQTL 246
>gi|449501601|ref|XP_004161413.1| PREDICTED: putative DNA repair protein RAD23-1-like [Cucumis
sativus]
Length = 401
Score = 346 bits (888), Expect = 6e-93, Method: Compositional matrix adjust.
Identities = 192/289 (66%), Positives = 211/289 (73%), Gaps = 26/289 (8%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
MKLTVKTLKGSHFEIRVQ +DTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDE+TLA
Sbjct: 1 MKLTVKTLKGSHFEIRVQLTDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDESTLA 60
Query: 61 DNKVSEDGFLVVMLSKSKTLGSAGASSAQPAHTTPPTTAPSSNSTP---------PQEAS 111
+NKVSE+GFLVVMLSKSKT SAG SS QPA PP P +STP P
Sbjct: 61 ENKVSEEGFLVVMLSKSKTSVSAGQSSTQPAQN-PPVAQPVLSSTPAAQVTPSPTPAAQV 119
Query: 112 VPPPAPTPSIPA-------------SNVTSNVTAANANSDTYGQAASNLVAGNDLEQTIQ 158
P P P P P + TS N +DTYGQAASNLVAGN+LEQT+Q
Sbjct: 120 TPSPTPAPQAPTQAPTQAPSSAPKNTTSTSERVTDNVQTDTYGQAASNLVAGNNLEQTVQ 179
Query: 159 QIMDMGGGTWDKETVTRALQAAYNNPERAVDYLYSGIPETAEVAVPVAHFPASQAAETGA 218
Q+MDMGGG WD+ETV RAL+AAYNNPERAVDYLYSGIPE+AEVAVPV F + QA ET A
Sbjct: 180 QLMDMGGGNWDRETVVRALRAAYNNPERAVDYLYSGIPESAEVAVPVGRFGSGQATETDA 239
Query: 219 AGAAPVSGVPNSSPLNMFPQE---TLSGAPAGGLGSLDFLRNNQQVWSL 264
+ APVSG PN++PLNMFPQE SG G LGSL+FLRNN Q +L
Sbjct: 240 SVPAPVSGAPNTAPLNMFPQEALSAGSGGGGGNLGSLEFLRNNPQFQAL 288
>gi|334184023|ref|NP_001185439.1| putative DNA repair protein RAD23-1 [Arabidopsis thaliana]
gi|332198161|gb|AEE36282.1| putative DNA repair protein RAD23-1 [Arabidopsis thaliana]
Length = 395
Score = 340 bits (873), Expect = 3e-91, Method: Compositional matrix adjust.
Identities = 178/283 (62%), Positives = 214/283 (75%), Gaps = 22/283 (7%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
MKLTVKTLKGSHFEIRV PSDT+MAVKKNIED QGKDNYPCGQQLLIHNGKVLKDET+L
Sbjct: 1 MKLTVKTLKGSHFEIRVLPSDTIMAVKKNIEDSQGKDNYPCGQQLLIHNGKVLKDETSLV 60
Query: 61 DNKVSEDGFLVVMLSKSKTLGSAGASSAQPAHTTPPTTAPSSNSTPP----QEASVPPPA 116
+NKV+E+GFLVVMLSKSK+ GSAG +S Q + + P +A +S++ P ++S P +
Sbjct: 61 ENKVTEEGFLVVMLSKSKSGGSAGQASVQTSSVSQPVSATTSSTKPAAPSTTQSSPVPAS 120
Query: 117 PTPSIPASNVTSNV---------------TAANANSDTYGQAASNLVAGNDLEQTIQQIM 161
P P+ V + V + A +DTYGQAAS LV+G+ LEQ +QQIM
Sbjct: 121 PIPAQEQPAVYAFVFSFAGLAFCPLYGFPKVSMAQTDTYGQAASTLVSGSSLEQMVQQIM 180
Query: 162 DMGGGTWDKETVTRALQAAYNNPERAVDYLYSGIPETAEVAVPVAHFPASQAAETGAAGA 221
+MGGG+WDKETVTRAL+AAYNNPERAVDYLYSGIP+TAEVAVPV P +Q A +GAA
Sbjct: 181 EMGGGSWDKETVTRALRAAYNNPERAVDYLYSGIPQTAEVAVPV---PEAQIAGSGAAPV 237
Query: 222 APVSGVPNSSPLNMFPQETLSGAPAGGLGSLDFLRNNQQVWSL 264
AP SG PNSSPL++FPQET++ A +G LG+L+FLRNN Q L
Sbjct: 238 APASGGPNSSPLDLFPQETVAAAGSGDLGTLEFLRNNDQFQQL 280
>gi|449439755|ref|XP_004137651.1| PREDICTED: putative DNA repair protein RAD23-1-like [Cucumis
sativus]
Length = 358
Score = 340 bits (872), Expect = 4e-91, Method: Compositional matrix adjust.
Identities = 186/267 (69%), Positives = 206/267 (77%), Gaps = 25/267 (9%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
MKLTVKTLKGSHFEIRVQ +DTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDE+TLA
Sbjct: 1 MKLTVKTLKGSHFEIRVQLTDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDESTLA 60
Query: 61 DNKVSEDGFLVVMLSKSKTLGSAGASSAQPAHTTPPTTAPSSNSTPPQEASVPPPAPTPS 120
+NKVSE+GFLVVMLSKSKT SAG SS QPA PP P +STP + TPS
Sbjct: 61 ENKVSEEGFLVVMLSKSKTSVSAGQSSTQPAQN-PPVAQPVLSSTPAAQV-------TPS 112
Query: 121 IPASNVTSNVTAANANSDTYGQAASNLVAGNDLEQTIQQIMDMGGGTWDKETVTRALQAA 180
+ +DTYGQAASNLVAGN+LEQT+QQ+MDMGGG WD+ETV RAL+AA
Sbjct: 113 V--------------QTDTYGQAASNLVAGNNLEQTVQQLMDMGGGNWDRETVVRALRAA 158
Query: 181 YNNPERAVDYLYSGIPETAEVAVPVAHFPASQAAETGAAGAAPVSGVPNSSPLNMFPQE- 239
YNNPERAVDYLYSGIPE+AEVAVPV F + QA ET A+ APVSG PN++PLNMFPQE
Sbjct: 159 YNNPERAVDYLYSGIPESAEVAVPVGRFGSGQATETDASVPAPVSGAPNTAPLNMFPQEA 218
Query: 240 --TLSGAPAGGLGSLDFLRNNQQVWSL 264
SG G LGSL+FLRNN Q +L
Sbjct: 219 LSAGSGGGGGNLGSLEFLRNNPQFQAL 245
>gi|358346471|ref|XP_003637291.1| RAD23 protein [Medicago truncatula]
gi|355503226|gb|AES84429.1| RAD23 protein [Medicago truncatula]
Length = 366
Score = 340 bits (871), Expect = 5e-91, Method: Compositional matrix adjust.
Identities = 188/265 (70%), Positives = 212/265 (80%), Gaps = 13/265 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
MKLTVKTLKGSHFEIRV PSD++MAVKKNIED+QGKDNYPCGQQLLIHNGKVLKDETTLA
Sbjct: 1 MKLTVKTLKGSHFEIRVHPSDSIMAVKKNIEDIQGKDNYPCGQQLLIHNGKVLKDETTLA 60
Query: 61 DNKVSEDGFLVVMLSKSKTLGSAGASSAQPAHTTPPTTAPSSNSTPPQEASVPPPAPTPS 120
DNKVSEDGFLVVMLSKSK LGSAG SS Q A + PP T P+ +ST + +P+
Sbjct: 61 DNKVSEDGFLVVMLSKSKVLGSAGTSSTQTA-SNPPITVPTPDSTSVVQTQSANNNASPA 119
Query: 121 IPA-SNVTSNVTAANANSDTYGQAASNLVAGNDLEQTIQQIMDMGGGTWDKETVTRALQA 179
+ A +NVT +DTYGQAASNLVAG++LEQTIQQ++DMGGG+WD++TV RAL+A
Sbjct: 120 VLAPTNVT---------TDTYGQAASNLVAGSNLEQTIQQLIDMGGGSWDRDTVNRALRA 170
Query: 180 AYNNPERAVDYLYSGIPETAEVAVPVAHFPASQAAETGAAGAAPVSGVPNSSPLNMFPQE 239
A+NNPERAVDYLYSGIPE AEVAVP A +P S ETG V GVPNSSPLNMFPQE
Sbjct: 171 AFNNPERAVDYLYSGIPEAAEVAVPAAQYP-SNPTETGGVTTGVVPGVPNSSPLNMFPQE 229
Query: 240 TLSGAPAGGLGSLDFLRNNQQVWSL 264
T+SGA AG GSLDFLRNN Q +L
Sbjct: 230 TISGAGAGA-GSLDFLRNNPQFQAL 253
>gi|359483130|ref|XP_002270323.2| PREDICTED: putative DNA repair protein RAD23-1-like [Vitis
vinifera]
Length = 400
Score = 335 bits (858), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 199/287 (69%), Positives = 215/287 (74%), Gaps = 23/287 (8%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTL
Sbjct: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLV 60
Query: 61 DNKVSEDGFLVVMLSKSKTLGSAGASSAQPAHTTPPTTAPSSNSTPPQEASVPPPAPTPS 120
+NKV+EDGFLVVMLSKSK++G+ G SSAQ A T P P+ P + P A
Sbjct: 61 ENKVTEDGFLVVMLSKSKSIGATGTSSAQSASTPAPAAIPTPAPAPIPTPAPAPIATPAP 120
Query: 121 I-----------------------PASNVTSNVTAANANSDTYGQAASNLVAGNDLEQTI 157
P S TS V + +DTYGQAASN+V+ N LEQTI
Sbjct: 121 APIATPAPAPNPTAAAEAPVNAQAPRSISTSEVATDSVLADTYGQAASNIVSANHLEQTI 180
Query: 158 QQIMDMGGGTWDKETVTRALQAAYNNPERAVDYLYSGIPETAEVAVPVAHFPASQAAETG 217
QQIMD+GGGTWDKETVTRAL+AAYNNPERAVDYLYSGIPE AEVAVPVAHFPA Q +G
Sbjct: 181 QQIMDIGGGTWDKETVTRALRAAYNNPERAVDYLYSGIPEAAEVAVPVAHFPADQETGSG 240
Query: 218 AAGAAPVSGVPNSSPLNMFPQETLSGAPAGGLGSLDFLRNNQQVWSL 264
AA AAP SGVPNSSPLNMFPQETLSGA GGLGSL+FLRNN Q +L
Sbjct: 241 AAPAAPASGVPNSSPLNMFPQETLSGAAGGGLGSLEFLRNNHQFQAL 287
>gi|298204749|emb|CBI25247.3| unnamed protein product [Vitis vinifera]
Length = 399
Score = 334 bits (857), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 199/287 (69%), Positives = 214/287 (74%), Gaps = 24/287 (8%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTL
Sbjct: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLV 60
Query: 61 DNKVSEDGFLVVMLSKSKTLGSAGASSAQPAHTTPPTTAPSSNSTPPQEASVPPPAPTPS 120
+NKV+EDGFLVVMLSKSK++G+ G SSAQ A T P P+ P + P A
Sbjct: 61 ENKVTEDGFLVVMLSKSKSIGATGTSSAQSASTPAPAAIPTPAPAPIPTPAPAPIATPAP 120
Query: 121 I-----------------------PASNVTSNVTAANANSDTYGQAASNLVAGNDLEQTI 157
P S TS V + +DTYGQAASN+V+ N LEQTI
Sbjct: 121 APIATPAPAPNPTAAAEAPVNAQAPRSISTSEVATDSVLADTYGQAASNIVSANHLEQTI 180
Query: 158 QQIMDMGGGTWDKETVTRALQAAYNNPERAVDYLYSGIPETAEVAVPVAHFPASQAAETG 217
QQIMD+GGGTWDKETVTRAL+AAYNNPERAVDYLYSGIPE AEVAVPVAHFPA Q G
Sbjct: 181 QQIMDIGGGTWDKETVTRALRAAYNNPERAVDYLYSGIPEAAEVAVPVAHFPADQET-GG 239
Query: 218 AAGAAPVSGVPNSSPLNMFPQETLSGAPAGGLGSLDFLRNNQQVWSL 264
AA AAP SGVPNSSPLNMFPQETLSGA GGLGSL+FLRNN Q +L
Sbjct: 240 AAPAAPASGVPNSSPLNMFPQETLSGAAGGGLGSLEFLRNNHQFQAL 286
>gi|118486403|gb|ABK95041.1| unknown [Populus trichocarpa]
Length = 375
Score = 331 bits (849), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 195/271 (71%), Positives = 208/271 (76%), Gaps = 16/271 (5%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
MKLTVKTLKGSHFEI+VQP+DTVM VKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTL
Sbjct: 1 MKLTVKTLKGSHFEIKVQPTDTVMGVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLV 60
Query: 61 DNKVSEDGFLVVMLSKSKTLGSAGASSAQPAHTTPPTTAPSSNSTPPQEASVPPPAPTPS 120
DNKV+EDGFLVVMLSKSKT +AG SS QP T P TT S+++ PA +
Sbjct: 61 DNKVTEDGFLVVMLSKSKT-AAAGTSSTQPVSTPPTTTPTSNSTPDAPAPDAQAPASKSA 119
Query: 121 IPASNVTSNVTAANANSDTYGQAASNLVAGNDLEQTIQQIMDMGGGTWDKETVTRALQAA 180
+ T ANA SDTYGQAASNLVAG+ LEQTIQQIMD+GGG WDKETVTRAL+AA
Sbjct: 120 SASDTAT-----ANAQSDTYGQAASNLVAGSSLEQTIQQIMDVGGGNWDKETVTRALRAA 174
Query: 181 YNNPERAVDYLYSGIPETAEVAVPVAHFPASQAAET--GAAGAAPVSGVPNSSPLNMFPQ 238
YNNPERAVDYLYSGIPETAEVAVPVA FPA Q ET A A G PNSSPLNMFP
Sbjct: 175 YNNPERAVDYLYSGIPETAEVAVPVARFPADQGIETGAAPAAPALAPGGPNSSPLNMFP- 233
Query: 239 ETLSGAPAGG-----LGSLDFLRNNQQVWSL 264
ETLSG GG LGSLDFLRNNQQ +L
Sbjct: 234 ETLSG--GGGDAGLVLGSLDFLRNNQQFQAL 262
>gi|7715605|gb|AAF68123.1|AC010793_18 F20B17.8 [Arabidopsis thaliana]
Length = 367
Score = 330 bits (845), Expect = 5e-88, Method: Compositional matrix adjust.
Identities = 174/269 (64%), Positives = 202/269 (75%), Gaps = 20/269 (7%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
MKLTVKTLKGSHFEIRV PSDT+MAVKKNIED QGKDNYPCGQQLLIHNGKVLKDET+L
Sbjct: 1 MKLTVKTLKGSHFEIRVLPSDTIMAVKKNIEDSQGKDNYPCGQQLLIHNGKVLKDETSLV 60
Query: 61 DNKVSEDGFLVVMLSKSKTLGSAGASSAQPA-----HTTPPTTAPSSNSTPPQEASVPPP 115
+NKV+E+GFLVVMLSKSK+ GSAG +S Q H+ P +S
Sbjct: 61 ENKVTEEGFLVVMLSKSKSGGSAGQASVQCVRLLLFHSLFPLPHLRLSSIY--------- 111
Query: 116 APTPSIPASNVTSNVTAANANSDTYGQAASNLVAGNDLEQTIQQIMDMGGGTWDKETVTR 175
P S T + + +DTYGQAAS LV+G+ LEQ +QQIM+MGGG+WDKETVTR
Sbjct: 112 --NPVFTCSCFTYSCSRTTG-TDTYGQAASTLVSGSSLEQMVQQIMEMGGGSWDKETVTR 168
Query: 176 ALQAAYNNPERAVDYLYSGIPETAEVAVPVAHFPASQAAETGAAGAAPVSGVPNSSPLNM 235
AL+AAYNNPERAVDYLYSGIP+TAEVAVPV P +Q A +GAA AP SG PNSSPL++
Sbjct: 169 ALRAAYNNPERAVDYLYSGIPQTAEVAVPV---PEAQIAGSGAAPVAPASGGPNSSPLDL 225
Query: 236 FPQETLSGAPAGGLGSLDFLRNNQQVWSL 264
FPQET++ A +G LG+L+FLRNN QV L
Sbjct: 226 FPQETVAAAGSGDLGTLEFLRNNDQVAIL 254
>gi|1914685|emb|CAA72742.1| RAD23 protein, isoform II [Daucus carota]
Length = 379
Score = 330 bits (845), Expect = 5e-88, Method: Compositional matrix adjust.
Identities = 179/275 (65%), Positives = 204/275 (74%), Gaps = 20/275 (7%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
MKLTVKTLKGSHFEIR QP+DTVMA+KKNIED+QGKDNYPCGQQLLIHNGKVLKDE+TLA
Sbjct: 1 MKLTVKTLKGSHFEIRAQPNDTVMAIKKNIEDLQGKDNYPCGQQLLIHNGKVLKDESTLA 60
Query: 61 DNKVSEDGFLVVMLSKSKTLGSAGASSAQ----PAHTTPPTTAPSSNSTPPQEASVPPPA 116
++K+SEDGFLVVML KSKT+ S G +AQ PA T P AP+ ++V P
Sbjct: 61 ESKISEDGFLVVMLGKSKTMSSTGTPAAQSSSAPAPTPAPAVAPAPAPAAAPASAVIPNT 120
Query: 117 PTPSIPASNVTSNVTAANANSDTYGQAASNLVAGNDLEQTIQQIMDMGGGTWDKETVTRA 176
P P ++ A A SDTYG+AASN+VAG++LEQTIQ IMDMGGG WD V+RA
Sbjct: 121 TVPEAP-------LSPAFAPSDTYGEAASNVVAGSNLEQTIQHIMDMGGGMWDTNMVSRA 173
Query: 177 LQAAYNNPERAVDYLYSGIPETAEVAVPVAHFPASQ-------AAETGAAGAAPVSGVPN 229
L+AAYNNPERAVDYLYSGIPE AE AVPV+HF Q ++ G AGAAP G PN
Sbjct: 174 LRAAYNNPERAVDYLYSGIPEMAEAAVPVSHFQGDQINAGNNAISDNGVAGAAP--GAPN 231
Query: 230 SSPLNMFPQETLSGAPAGGLGSLDFLRNNQQVWSL 264
S PLNMFPQETLSG GLGSL+FLRNN Q +L
Sbjct: 232 SLPLNMFPQETLSGVTGAGLGSLEFLRNNPQFQTL 266
>gi|224073098|ref|XP_002303970.1| predicted protein [Populus trichocarpa]
gi|222841402|gb|EEE78949.1| predicted protein [Populus trichocarpa]
Length = 358
Score = 324 bits (831), Expect = 2e-86, Method: Compositional matrix adjust.
Identities = 193/269 (71%), Positives = 206/269 (76%), Gaps = 29/269 (10%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
MKLTVKTLKGSHFEI+V P+DT+M VKKNIED QGKDNYPCGQQLLIHNGKVLKDETTLA
Sbjct: 1 MKLTVKTLKGSHFEIKVHPTDTIMGVKKNIEDAQGKDNYPCGQQLLIHNGKVLKDETTLA 60
Query: 61 DNKVSEDGFLVVMLSKSKTLGSAGASSAQPAHTTPPTTAPSSNSTPPQEASVPPPAPTPS 120
DNKV+EDGFLVVMLSKSKT G+AG SS QP T P TT S ++ P
Sbjct: 61 DNKVTEDGFLVVMLSKSKT-GTAGTSSTQPVSTPPTTTPTSISTPAPD------------ 107
Query: 121 IPASNVTSNVTAANANSDTYGQAASNLVAGNDLEQTIQQIMDMGGGTWDKETVTRALQAA 180
A A SDTYGQAASNLVAG++LEQT+QQIMDMGGGTWDKETVTRAL+AA
Sbjct: 108 ----------AQAFAQSDTYGQAASNLVAGSNLEQTLQQIMDMGGGTWDKETVTRALRAA 157
Query: 181 YNNPERAVDYLYSGIPETAEVAVPVAHFPASQAAET--GAAGAAPVSGVPNSSPLNMFPQ 238
YNNPERAVDYLYSGIPETAEVAVPVA FPA QA ET A AP G PNSSPLNMFP
Sbjct: 158 YNNPERAVDYLYSGIPETAEVAVPVARFPADQATETGAAPAAPAPAFGAPNSSPLNMFP- 216
Query: 239 ETLS---GAPAGGLGSLDFLRNNQQVWSL 264
ET+S G GGLGSLDFLRNNQQ +L
Sbjct: 217 ETISGGGGGAGGGLGSLDFLRNNQQFQAL 245
>gi|6587822|gb|AAF18513.1|AC010924_26 Contains similarity to gb|Y12014 RAD23 protein isoform II from
Daucus carota and is a member of the Ubiquitin PF|00240
family containing a UBA PF|00627 domain. EST gb|H37284
comes from this gene [Arabidopsis thaliana]
Length = 246
Score = 317 bits (813), Expect = 3e-84, Method: Compositional matrix adjust.
Identities = 171/266 (64%), Positives = 193/266 (72%), Gaps = 34/266 (12%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
MKLTVKTLKGSHFEIRV P+DT+MAVKKNIED Q KDNYPCGQQLLIHNGKVLKDETTL
Sbjct: 1 MKLTVKTLKGSHFEIRVLPTDTIMAVKKNIEDSQSKDNYPCGQQLLIHNGKVLKDETTLV 60
Query: 61 DNKVSEDGFLVVMLSKSKTLGSAGASSAQPA--HTTPPTTAPSSNSTPPQEASVPPPAPT 118
+NKV+E+GFLVVMLSKSKT SAG SS Q A TT P+SNSTP QE PT
Sbjct: 61 ENKVTEEGFLVVMLSKSKTASSAGPSSTQLAAPSTTQSIAVPASNSTPVQE------QPT 114
Query: 119 PSIPASNVTSNVTAANANSDTYGQAASNLVAGNDLEQTIQQIMDMGGGTWDKETVTRALQ 178
A SDTYGQAAS LV+G+ +EQ +QQIM+MGGG+WDKETVTRAL+
Sbjct: 115 ----------------AQSDTYGQAASTLVSGSSIEQMVQQIMEMGGGSWDKETVTRALR 158
Query: 179 AAYNNPERAVDYLYSGIPETAEVAVPVAHFPASQAAETGAAG---AAPVSGVPNSSPLNM 235
AAYNNPERAVDYLYSGIPET + PA+ + G+ A P SG PNSSPL++
Sbjct: 159 AAYNNPERAVDYLYSGIPETVTI-------PATNLSGVGSGRELTAPPPSGGPNSSPLDL 211
Query: 236 FPQETLSGAPAGGLGSLDFLRNNQQV 261
FPQE +S A G LG+L+FLR N QV
Sbjct: 212 FPQEAVSDAAGGDLGTLEFLRGNDQV 237
>gi|449459440|ref|XP_004147454.1| PREDICTED: putative DNA repair protein RAD23-1-like [Cucumis
sativus]
Length = 374
Score = 312 bits (800), Expect = 8e-83, Method: Compositional matrix adjust.
Identities = 175/267 (65%), Positives = 202/267 (75%), Gaps = 9/267 (3%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
MKLTVKTLKGSHF+I VQP+DTV+ VKKNIE+VQGKD+YPC QQLLIHNGKVLKDETTL
Sbjct: 1 MKLTVKTLKGSHFQIEVQPTDTVLGVKKNIENVQGKDSYPCSQQLLIHNGKVLKDETTLT 60
Query: 61 DNKVSEDGFLVVMLSKSKTLGSAGASSAQPAHTTPPTTAPSSNSTPPQEASVPPPAPTPS 120
+NK++EDGFLVVMLSKSK A + + +T TT + + P S+P P+
Sbjct: 61 ENKITEDGFLVVMLSKSK------APGSTGSSSTQTTTIVPTTTPTPNSTSIPEAPAQPA 114
Query: 121 IPASNVTSNVTAANANSDTYGQAASNLVAGNDLEQTIQQIMDMGGGTWDKETVTRALQAA 180
+ S+V ANA DTYGQAASNLV+GN+LEQTIQ+IMDMGGG+WD+ETVTRAL+AA
Sbjct: 115 ASRNVAISDVPTANAQIDTYGQAASNLVSGNNLEQTIQEIMDMGGGSWDRETVTRALRAA 174
Query: 181 YNNPERAVDYLYSGIPETAEVAVPVAHFPASQAAETGAAGAAPVSGVPNSSPLNMFPQE- 239
YNNPERAVDYLYSGIPETAEVA PVA P Q + G A A PVSG PNSSPLNMFPQE
Sbjct: 175 YNNPERAVDYLYSGIPETAEVAAPVARPPTGQPIDAGGATAPPVSGGPNSSPLNMFPQES 234
Query: 240 --TLSGAPAGGLGSLDFLRNNQQVWSL 264
+G G LGSL+FLRNN Q +L
Sbjct: 235 LAAAAGGGGGSLGSLEFLRNNPQFQAL 261
>gi|297844544|ref|XP_002890153.1| hypothetical protein ARALYDRAFT_312599 [Arabidopsis lyrata subsp.
lyrata]
gi|297335995|gb|EFH66412.1| hypothetical protein ARALYDRAFT_312599 [Arabidopsis lyrata subsp.
lyrata]
Length = 364
Score = 311 bits (797), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 167/264 (63%), Positives = 195/264 (73%), Gaps = 15/264 (5%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
MKLTVKTLKGSHFEIRVQP+DT+MAVKKNIED Q KDNYPCGQQLLIHNGKVLKDETTL
Sbjct: 1 MKLTVKTLKGSHFEIRVQPTDTIMAVKKNIEDSQSKDNYPCGQQLLIHNGKVLKDETTLV 60
Query: 61 DNKVSEDGFLVVMLSKSKTLGSAGASSAQPAHTTPPTTAPSSNSTPPQEASVPPPAPTPS 120
+NKV+E+GFLVVMLSKSKT SAG P++ +++T + P AP+ +
Sbjct: 61 ENKVTEEGFLVVMLSKSKTPSSAG-----------PSSIQPTSTTTSTISPTPLAAPSIA 109
Query: 121 IPASNVTSNVTAANANSDTYGQAASNLVAGNDLEQTIQQIMDMGGGTWDKETVTRALQAA 180
+PASN T A SDTYGQAAS LV+G+ +EQ +QQIM+MGGG+WDKETVTRAL+AA
Sbjct: 110 VPASNSTPVQEQLPAQSDTYGQAASTLVSGSSVEQMVQQIMEMGGGSWDKETVTRALRAA 169
Query: 181 YNNPERAVDYLYSGIPETAEVAVPVAHFPASQAAETGAAGAAPVSGVPNSSPLNMFPQET 240
YNNPERAVDYLYSGIPET VA+P + S A P SG PNSSPL++FPQE
Sbjct: 170 YNNPERAVDYLYSGIPET--VAIPATNL--SGVGSGAELTAPPASGGPNSSPLDLFPQEA 225
Query: 241 LSGAPAGGLGSLDFLRNNQQVWSL 264
+S A G LG+L+FLR N Q L
Sbjct: 226 VSDAGGGDLGTLEFLRGNDQFQQL 249
>gi|224057188|ref|XP_002299163.1| predicted protein [Populus trichocarpa]
gi|222846421|gb|EEE83968.1| predicted protein [Populus trichocarpa]
Length = 349
Score = 310 bits (795), Expect = 4e-82, Method: Compositional matrix adjust.
Identities = 177/271 (65%), Positives = 188/271 (69%), Gaps = 42/271 (15%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
MKLTVKTLKGSHFEI+VQP+DTVM VKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTL
Sbjct: 1 MKLTVKTLKGSHFEIKVQPTDTVMGVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLV 60
Query: 61 DNKVSEDGFLVVMLSKSKTLGSAGASSAQPAHTTPPTTAPSSNSTPPQEASVPPPAPTPS 120
DNKV+EDGFLVVMLSK + ++ P A +
Sbjct: 61 DNKVTEDGFLVVMLSKPVSTPPTTTPTSNSTPDAPAPDAQAPAQ---------------- 104
Query: 121 IPASNVTSNVTAANANSDTYGQAASNLVAGNDLEQTIQQIMDMGGGTWDKETVTRALQAA 180
SDTYGQAASNLVAG+ LEQTIQQIMD+GGG WDKETVTRAL+AA
Sbjct: 105 ----------------SDTYGQAASNLVAGSSLEQTIQQIMDVGGGNWDKETVTRALRAA 148
Query: 181 YNNPERAVDYLYSGIPETAEVAVPVAHFPASQAAET--GAAGAAPVSGVPNSSPLNMFPQ 238
YNNPERAVDYLYSGIPETAEVAVPVA FPA Q ET A A G PNSSPLNMFP
Sbjct: 149 YNNPERAVDYLYSGIPETAEVAVPVARFPADQGIETGAAPAAPALAPGGPNSSPLNMFP- 207
Query: 239 ETLSGAPAGG-----LGSLDFLRNNQQVWSL 264
ETLSG GG LGSLDFLRNNQQ +L
Sbjct: 208 ETLSG--GGGDAGLVLGSLDFLRNNQQFQAL 236
>gi|15221013|ref|NP_173070.1| putative DNA repair protein RAD23-2 [Arabidopsis thaliana]
gi|73620992|sp|Q84L32.2|RD23B_ARATH RecName: Full=Putative DNA repair protein RAD23-2; AltName:
Full=RAD23-like protein 2; Short=AtRAD23-2
gi|110735100|gb|ABG89120.1| Rad23-3B [synthetic construct]
gi|332191297|gb|AEE29418.1| putative DNA repair protein RAD23-2 [Arabidopsis thaliana]
Length = 368
Score = 306 bits (785), Expect = 5e-81, Method: Compositional matrix adjust.
Identities = 169/267 (63%), Positives = 197/267 (73%), Gaps = 17/267 (6%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
MKLTVKTLKGSHFEIRV P+DT+MAVKKNIED Q KDNYPCGQQLLIHNGKVLKDETTL
Sbjct: 1 MKLTVKTLKGSHFEIRVLPTDTIMAVKKNIEDSQSKDNYPCGQQLLIHNGKVLKDETTLV 60
Query: 61 DNKVSEDGFLVVMLSKSKTLGSAGASSAQPAHTTPPTTAPSSNSTPPQEASVPPPAPTPS 120
+NKV+E+GFLVVMLSKSKT SAG SS QP TT T + ++ + P S+ +
Sbjct: 61 ENKVTEEGFLVVMLSKSKTASSAGPSSTQPTSTTTSTISSTTLAAPSTTQSI-------A 113
Query: 121 IPASNVTSNVTAANANSDTYGQAASNLVAGNDLEQTIQQIMDMGGGTWDKETVTRALQAA 180
+PASN T A SDTYGQAAS LV+G+ +EQ +QQIM+MGGG+WDKETVTRAL+AA
Sbjct: 114 VPASNSTPVQEQPTAQSDTYGQAASTLVSGSSIEQMVQQIMEMGGGSWDKETVTRALRAA 173
Query: 181 YNNPERAVDYLYSGIPETAEVAVPVAHFPASQAAETGAAG---AAPVSGVPNSSPLNMFP 237
YNNPERAVDYLYSGIPET + PA+ + G+ A P SG PNSSPL++FP
Sbjct: 174 YNNPERAVDYLYSGIPETVTI-------PATNLSGVGSGRELTAPPPSGGPNSSPLDLFP 226
Query: 238 QETLSGAPAGGLGSLDFLRNNQQVWSL 264
QE +S A G LG+L+FLR N Q L
Sbjct: 227 QEAVSDAAGGDLGTLEFLRGNDQFQQL 253
>gi|30409722|dbj|BAC76391.1| RAD23-like protein [Arabidopsis thaliana]
Length = 366
Score = 298 bits (764), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 168/267 (62%), Positives = 195/267 (73%), Gaps = 19/267 (7%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
MKLTVKTLKGSHFEIRV P T+MAVKKNIED Q KDNYPCGQQLLIHNGKVLKDETTL
Sbjct: 1 MKLTVKTLKGSHFEIRVLP--TIMAVKKNIEDSQSKDNYPCGQQLLIHNGKVLKDETTLV 58
Query: 61 DNKVSEDGFLVVMLSKSKTLGSAGASSAQPAHTTPPTTAPSSNSTPPQEASVPPPAPTPS 120
+NKV+E+GFLVVMLSKSKT SAG SS QP TT T + ++ + P S+ +
Sbjct: 59 ENKVTEEGFLVVMLSKSKTASSAGPSSTQPTSTTTSTISSTTLAAPSTTQSI-------A 111
Query: 121 IPASNVTSNVTAANANSDTYGQAASNLVAGNDLEQTIQQIMDMGGGTWDKETVTRALQAA 180
+PASN T A SDTYGQAAS LV+G+ +EQ +QQIM+MGGG+WDKETVTRAL+AA
Sbjct: 112 VPASNSTPVQEQPTAQSDTYGQAASTLVSGSSIEQMVQQIMEMGGGSWDKETVTRALRAA 171
Query: 181 YNNPERAVDYLYSGIPETAEVAVPVAHFPASQAAETGAAG---AAPVSGVPNSSPLNMFP 237
YNNPERAVDYLYSGIPET + PA+ + G+ A P SG PNSSPL++FP
Sbjct: 172 YNNPERAVDYLYSGIPETVTI-------PATNLSGVGSGRELTAPPPSGGPNSSPLDLFP 224
Query: 238 QETLSGAPAGGLGSLDFLRNNQQVWSL 264
QE +S A G LG+L+FLR N Q L
Sbjct: 225 QEAVSDAAGGDLGTLEFLRGNDQFQQL 251
>gi|197717669|gb|ACH72675.1| RAD23 [Pinus sylvestris var. mongolica]
Length = 390
Score = 298 bits (762), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 165/284 (58%), Positives = 199/284 (70%), Gaps = 24/284 (8%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
MKL+VKTLKG+ FEI QP+DTVMAVKK IE++QGKD YPCGQQLLIH GKVLKD+TT+
Sbjct: 1 MKLSVKTLKGNRFEIEAQPNDTVMAVKKQIEEIQGKDTYPCGQQLLIHQGKVLKDDTTIE 60
Query: 61 DNKVSEDGFLVVMLSKSKTLGSAGASSAQPAHTTPPTTAPSSNSTPPQEASVPPPAPTPS 120
DN ++E+GFLVVML+KSKT + GASS A T PT STPP AS P +P
Sbjct: 61 DNTITENGFLVVMLTKSKTSSAVGASSTSTASTVQPT----QTSTPPAPASNPVEVASPV 116
Query: 121 I--------PASNVTSNVTAANANSDTYGQAASNLVAGNDLEQTIQQIMDMGGGTWDKET 172
+ AS TA AN+D YG+AAS LVAG++LEQTIQQ++DMGGG+WD++T
Sbjct: 117 VSQLPAVAPAASVSAPETTAVQANADPYGEAASILVAGSNLEQTIQQMLDMGGGSWDRDT 176
Query: 173 VTRALQAAYNNPERAVDYLYSGIPETAEVAVPVAHFPASQ------------AAETGAAG 220
V RAL+AAYNNPERAV+YLYSGIPETAE+AVPVA P S A E+ +A
Sbjct: 177 VVRALRAAYNNPERAVEYLYSGIPETAEIAVPVARSPPSNPGATDQGTNNVIAGESDSAE 236
Query: 221 AAPVSGVPNSSPLNMFPQETLSGAPAGGLGSLDFLRNNQQVWSL 264
A SG PN++PLN+FPQ + A G G+LDFLRNN Q +L
Sbjct: 237 ATAPSGGPNAAPLNLFPQGLPNLGAAAGGGALDFLRNNPQFQAL 280
>gi|116787088|gb|ABK24371.1| unknown [Picea sitchensis]
Length = 390
Score = 294 bits (752), Expect = 4e-77, Method: Compositional matrix adjust.
Identities = 170/285 (59%), Positives = 213/285 (74%), Gaps = 26/285 (9%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
MKL+VKTLKG+ FEI QP+DTVMAVKK IE++QGKD YPCGQQLLIH GKVLKD+TT+
Sbjct: 1 MKLSVKTLKGNRFEIDAQPNDTVMAVKKQIEEIQGKDTYPCGQQLLIHQGKVLKDDTTIE 60
Query: 61 DNKVSEDGFLVVMLSKSKTLGSAGASSA------QPAHTTPPTTAPSSNSTPPQEASVPP 114
DN+++E+GFLVVML+K+KT +AGASS Q T+ P AP+SN P EA+ P
Sbjct: 61 DNQITENGFLVVMLTKTKTSSAAGASSTSSASTIQHTQTSTP-LAPASN---PVEAASPV 116
Query: 115 PAPTPSI-PASNVTS-NVTAANANSDTYGQAASNLVAGNDLEQTIQQIMDMGGGTWDKET 172
+ P++ PA++V++ TA AN+D YG+AAS LVAG++LEQTIQQ++DMGGG+WD++T
Sbjct: 117 VSQPPAVAPATSVSAPETTAVQANADPYGEAASILVAGSNLEQTIQQMLDMGGGSWDRDT 176
Query: 173 VTRALQAAYNNPERAVDYLYSGIPETAEVAVPVAHFPASQ------------AAETGAAG 220
V RAL+AAYNNPERAV+YLYSGIPETAE+AVPVA P S AAE+ A
Sbjct: 177 VVRALRAAYNNPERAVEYLYSGIPETAEIAVPVARSPPSNSGAAGQGTNDVVAAESDLAQ 236
Query: 221 AAPVSGVPNSSPLNMFPQETLS-GAPAGGLGSLDFLRNNQQVWSL 264
A SG PN++PLN+FPQ + GA AGG G+LDFLRNN Q +L
Sbjct: 237 ATVPSGGPNAAPLNLFPQGLPNLGATAGG-GALDFLRNNPQFQAL 280
>gi|449515726|ref|XP_004164899.1| PREDICTED: putative DNA repair protein RAD23-1-like, partial
[Cucumis sativus]
Length = 386
Score = 271 bits (694), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 156/245 (63%), Positives = 181/245 (73%), Gaps = 9/245 (3%)
Query: 23 VMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVMLSKSKTLGS 82
V+ VKKNIE+VQGKD+YPC QQLLIHNGKVLKDETTL +NK++EDGFLVVMLSKSK
Sbjct: 35 VLGVKKNIENVQGKDSYPCSQQLLIHNGKVLKDETTLTENKITEDGFLVVMLSKSK---- 90
Query: 83 AGASSAQPAHTTPPTTAPSSNSTPPQEASVPPPAPTPSIPASNVTSNVTAANANSDTYGQ 142
A + + +T TT + + P S+P P+ + S+V ANA DTYGQ
Sbjct: 91 --APGSTGSSSTQTTTIVPTTTPTPNSTSIPEAPAQPAASRNVAISDVPTANAQIDTYGQ 148
Query: 143 AASNLVAGNDLEQTIQQIMDMGGGTWDKETVTRALQAAYNNPERAVDYLYSGIPETAEVA 202
AASNLV+GN+LEQTIQ+IMDMGGG+WD+ETVTRAL+AAYNNPERAVDYLYSGIPETAEVA
Sbjct: 149 AASNLVSGNNLEQTIQEIMDMGGGSWDRETVTRALRAAYNNPERAVDYLYSGIPETAEVA 208
Query: 203 VPVAHFPASQAAETGAAGAAPVSGVPNSSPLNMFPQE---TLSGAPAGGLGSLDFLRNNQ 259
PVA P Q + G A A PVSG PNSSPLNMFPQE +G G LGSL+FLRNN
Sbjct: 209 APVARPPTGQPIDAGGATAPPVSGGPNSSPLNMFPQESLAAAAGGGGGSLGSLEFLRNNP 268
Query: 260 QVWSL 264
Q +L
Sbjct: 269 QFQAL 273
>gi|242060736|ref|XP_002451657.1| hypothetical protein SORBIDRAFT_04g005370 [Sorghum bicolor]
gi|241931488|gb|EES04633.1| hypothetical protein SORBIDRAFT_04g005370 [Sorghum bicolor]
Length = 369
Score = 271 bits (694), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 157/266 (59%), Positives = 200/266 (75%), Gaps = 12/266 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
MKLTVKTLKG+HFEIRVQP+DT+MAVKKNIE++QGKD+YP GQQLLI NGKVLKDE+TL
Sbjct: 1 MKLTVKTLKGTHFEIRVQPNDTIMAVKKNIEEIQGKDSYPWGQQLLIFNGKVLKDESTLD 60
Query: 61 DNKVSEDGFLVVMLSKSKTLGSAGASSAQPAHTTPPTTAPSSNSTPPQEASVPPPAPTPS 120
+NKV+EDGFLVVMLSK KT GS+G SS+QP++T AP ++ PQ+A PP APT +
Sbjct: 61 ENKVNEDGFLVVMLSKGKTSGSSGTSSSQPSNTPAARQAPPLDA--PQQAPQPPVAPTTT 118
Query: 121 IPASNVTSNVTAANANSDTYGQAASNLVAGNDLEQTIQQIMDMGGGTWDKETVTRALQAA 180
+ A A +TY AAS+L++G++++ I Q+M+MGGG+WD++ V RAL+AA
Sbjct: 119 SQPEGL-----PAQAPPNTYDNAASSLLSGSNVDTMINQLMEMGGGSWDRDKVQRALRAA 173
Query: 181 YNNPERAVDYLYSGIPETAEVAVPVAHFPA--SQAAETGAAGAAPVSGVPNSSPLNMFPQ 238
YNNPERAV+YLYSGIP TAEVAVP+ A + A TG AG +SG+PN++PLN+FPQ
Sbjct: 174 YNNPERAVEYLYSGIPVTAEVAVPIGGQGANTTDRAPTGEAG---LSGIPNTAPLNLFPQ 230
Query: 239 ETLSGAPAGGLGSLDFLRNNQQVWSL 264
+ G G LDFLRNNQQ ++
Sbjct: 231 GGSNAGGGAGGGPLDFLRNNQQFQAV 256
>gi|357138066|ref|XP_003570619.1| PREDICTED: putative DNA repair protein RAD23-1-like [Brachypodium
distachyon]
Length = 368
Score = 266 bits (679), Expect = 9e-69, Method: Compositional matrix adjust.
Identities = 157/267 (58%), Positives = 189/267 (70%), Gaps = 15/267 (5%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
MKLTVKTLKG+HFEIRVQ +DT+MAVKKNIE++QGKDNYP GQQLLIH GK+LKDE+TL
Sbjct: 1 MKLTVKTLKGTHFEIRVQQNDTIMAVKKNIEEIQGKDNYPWGQQLLIHTGKILKDESTLE 60
Query: 61 DNKVSEDGFLVVMLSKSKTLGSAGASSAQPAHTTPPTTAPSSNSTPPQEASVPPPAPT-P 119
+N+VSEDG LVVMLSKSK S+GASSAQP+ AP E+SVPP + P
Sbjct: 61 ENQVSEDGSLVVMLSKSKASVSSGASSAQPSSIPVTRQAPPDAQIQAAESSVPPTTTSQP 120
Query: 120 SIPASNVTSNVTAANANSDTYGQAASNLVAGNDLEQTIQQIMDMGGGTWDKETVTRALQA 179
P + N T AS+L++G++L+ I QIM+MGGG+WD++ V RAL+A
Sbjct: 121 ERPPAETPLN---------TVDHVASDLLSGSNLDTMINQIMEMGGGSWDRDKVQRALRA 171
Query: 180 AYNNPERAVDYLYSGIPETAEVAVPVAHFPASQAAETGAA--GAAPVSGVPNSSPLNMFP 237
AYNNPERAVDYLYSGIP TAEVAVPV A T AA G +SG+PN++PLN+FP
Sbjct: 172 AYNNPERAVDYLYSGIPVTAEVAVPVG---PQGANSTDAAPPGVTGLSGIPNTAPLNLFP 228
Query: 238 QETLSGAPAGGLGSLDFLRNNQQVWSL 264
Q + A G GSLDFLRNNQQ +L
Sbjct: 229 QGASNAGGAAGGGSLDFLRNNQQFQAL 255
>gi|115444607|ref|NP_001046083.1| Os02g0179300 [Oryza sativa Japonica Group]
gi|50252077|dbj|BAD28007.1| putative RAD23 protein [Oryza sativa Japonica Group]
gi|113535614|dbj|BAF07997.1| Os02g0179300 [Oryza sativa Japonica Group]
gi|222622305|gb|EEE56437.1| hypothetical protein OsJ_05616 [Oryza sativa Japonica Group]
Length = 369
Score = 264 bits (675), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 154/266 (57%), Positives = 191/266 (71%), Gaps = 12/266 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
MKLTVKTLKG+ FEIRVQP+DT+MAVKK IE++QGKD+YP GQQLLIHNGKVLKDE+TL
Sbjct: 1 MKLTVKTLKGTQFEIRVQPNDTIMAVKKIIEEIQGKDSYPWGQQLLIHNGKVLKDESTLE 60
Query: 61 DNKVSEDGFLVVMLSKSKTLGSAGASSAQPAHT--TPPTTAPSSNSTPPQEASVPPPAPT 118
+NKVSE GFLVVMLSKSK GS+GA S+ + T T T ++ PQ P P
Sbjct: 61 ENKVSEVGFLVVMLSKSKASGSSGALSSLTSSTPLTRQETPADASRAAPQPLVAPTRTPQ 120
Query: 119 PSIPASNVTSNVTAANANSDTYGQAASNLVAGNDLEQTIQQIMDMGGGTWDKETVTRALQ 178
P P A A S+ YGQAASNL++G++L+ TI Q+M+MGGG+WD++ V RAL+
Sbjct: 121 PERP---------PAEAPSNAYGQAASNLLSGSNLDTTINQLMEMGGGSWDRDKVQRALR 171
Query: 179 AAYNNPERAVDYLYSGIPETAEVAVPVAHFPASQAAETGAAGAAPVSGVPNSSPLNMFPQ 238
AAYNNPERAV+YLYSGIP TAEVAVP A + E + A +SG+PN+SPLN+FPQ
Sbjct: 172 AAYNNPERAVEYLYSGIPITAEVAVP-AGGQGANTTEPSSTREASLSGIPNASPLNLFPQ 230
Query: 239 ETLSGAPAGGLGSLDFLRNNQQVWSL 264
+ G G+L+FLR+NQQ +L
Sbjct: 231 GDANDGGGAGGGTLEFLRHNQQFQAL 256
>gi|218190185|gb|EEC72612.1| hypothetical protein OsI_06092 [Oryza sativa Indica Group]
Length = 369
Score = 264 bits (675), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 154/266 (57%), Positives = 191/266 (71%), Gaps = 12/266 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
MKLTVKTLKG+ FEIRVQP+DT+MAVKK IE++QGKD+YP GQQLLIHNGKVLKDE+TL
Sbjct: 1 MKLTVKTLKGTQFEIRVQPNDTIMAVKKIIEEIQGKDSYPWGQQLLIHNGKVLKDESTLE 60
Query: 61 DNKVSEDGFLVVMLSKSKTLGSAGASSAQPAHT--TPPTTAPSSNSTPPQEASVPPPAPT 118
+NKVSE GFLVVMLSKSK GS+GA S+ + T T T ++ PQ P P
Sbjct: 61 ENKVSEVGFLVVMLSKSKASGSSGALSSLTSSTPLTRQETPADASRAAPQPLVAPTRTPQ 120
Query: 119 PSIPASNVTSNVTAANANSDTYGQAASNLVAGNDLEQTIQQIMDMGGGTWDKETVTRALQ 178
P P A A S+ YGQAASNL++G++L+ TI Q+M+MGGG+WD++ V RAL+
Sbjct: 121 PERP---------PAEAPSNAYGQAASNLLSGSNLDTTINQLMEMGGGSWDRDKVQRALR 171
Query: 179 AAYNNPERAVDYLYSGIPETAEVAVPVAHFPASQAAETGAAGAAPVSGVPNSSPLNMFPQ 238
AAYNNPERAV+YLYSGIP TAEVAVP A + E + A +SG+PN+SPLN+FPQ
Sbjct: 172 AAYNNPERAVEYLYSGIPITAEVAVP-AGGQGANTTEPSSTREASLSGIPNASPLNLFPQ 230
Query: 239 ETLSGAPAGGLGSLDFLRNNQQVWSL 264
+ G G+L+FLR+NQQ +L
Sbjct: 231 GDANDGDGAGGGTLEFLRHNQQFQAL 256
>gi|226492672|ref|NP_001148810.1| LOC100282427 [Zea mays]
gi|195622286|gb|ACG32973.1| DNA repair protein RAD23-1 [Zea mays]
gi|238014028|gb|ACR38049.1| unknown [Zea mays]
gi|413926349|gb|AFW66281.1| DNA repair protein RAD23-1 isoform 1 [Zea mays]
gi|413926350|gb|AFW66282.1| DNA repair protein RAD23-1 isoform 2 [Zea mays]
gi|413926351|gb|AFW66283.1| DNA repair protein RAD23-1 isoform 3 [Zea mays]
Length = 368
Score = 261 bits (668), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 154/267 (57%), Positives = 193/267 (72%), Gaps = 15/267 (5%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
MKLTVKTLKG+HFEIRVQP+DT+MAVKKNIE++QGKD+YP GQQLLI NGKVLKDE+TL
Sbjct: 1 MKLTVKTLKGTHFEIRVQPNDTIMAVKKNIEEIQGKDSYPWGQQLLIFNGKVLKDESTLE 60
Query: 61 DNKVSEDGFLVVMLSKSKTLGSAGASSAQPAHTTPPTTAPSSNSTPPQEASVPPPAPTPS 120
+NKV+EDGFLVVMLSK KT GS G SS+Q H+ P T + PQ+A PP AP
Sbjct: 61 ENKVNEDGFLVVMLSKGKTSGSTGTSSSQ--HSNTPATRQAPPLEAPQQAPQPPVAPI-- 116
Query: 121 IPASNVTSNVTAANANS-DTYGQAASNLVAGNDLEQTIQQIMDMGGGTWDKETVTRALQA 179
TS A + +T+ AASNL++G +++ I Q+M+MGGG+WDK+ V RAL+A
Sbjct: 117 -----TTSQPEGLPAQAPNTHDNAASNLLSGRNVDTIINQLMEMGGGSWDKDKVQRALRA 171
Query: 180 AYNNPERAVDYLYSGIPETAEVAVPVAHFPA--SQAAETGAAGAAPVSGVPNSSPLNMFP 237
AYNNPERAV+YLYSGIP TAE+AVP+ A + A TG AG +SG+PN++PL++FP
Sbjct: 172 AYNNPERAVEYLYSGIPVTAEIAVPIGGQGANTTDRAPTGEAG---LSGIPNTAPLDLFP 228
Query: 238 QETLSGAPAGGLGSLDFLRNNQQVWSL 264
Q + G G LDFLRNN Q ++
Sbjct: 229 QGASNAGGGAGGGPLDFLRNNPQFQAV 255
>gi|224127650|ref|XP_002329330.1| predicted protein [Populus trichocarpa]
gi|222870784|gb|EEF07915.1| predicted protein [Populus trichocarpa]
Length = 384
Score = 260 bits (664), Expect = 5e-67, Method: Compositional matrix adjust.
Identities = 154/281 (54%), Positives = 195/281 (69%), Gaps = 26/281 (9%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMA-VKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTL 59
MK+ VKTLKG++FEI V+P DTV+ VKKNIE+VQG D YP QQ+LI+ GKVLKD+TTL
Sbjct: 1 MKVFVKTLKGTNFEIEVKPEDTVVVEVKKNIENVQGADVYPAAQQMLIYQGKVLKDDTTL 60
Query: 60 ADNKVSEDGFLVVMLSKSKTLGSAGASSAQPAHTTPPTTAPSSNSTPPQEASVPPPAPTP 119
++KV+E+ F+VVMLSKSK + S G S+A A P+ +S P A+ PP
Sbjct: 61 DESKVAENSFIVVMLSKSK-VSSGGPSTATAA-------PPNVSSGGPSTATAAPPTLVS 112
Query: 120 SIPASNVTSNVT------------AANANSDTYGQAASNLVAGNDLEQTIQQIMDMGGGT 167
+ P S++ SNVT AA +++D YGQAASNLVAG++LE TIQQI+DMGGG+
Sbjct: 113 AQPTSSLPSNVTQPSSTSQAAVPAAAFSDADMYGQAASNLVAGSNLEATIQQILDMGGGS 172
Query: 168 WDKETVTRALQAAYNNPERAVDYLYSGIPETAEVAVPVAHFPASQAA----ETGAAGAAP 223
W++ETV RAL+AA+NNPERAV+YLYSGIPE AEV PVA PAS A AAP
Sbjct: 173 WNRETVVRALRAAFNNPERAVEYLYSGIPEQAEVP-PVAQGPASGVAVNPPAQAQQPAAP 231
Query: 224 VSGVPNSSPLNMFPQETLSGAPAGGLGSLDFLRNNQQVWSL 264
SG PN++PL++FPQ S G G+LDFLRN+QQ +L
Sbjct: 232 PSGGPNANPLDLFPQGLPSTGSNAGAGNLDFLRNSQQFQAL 272
>gi|255551362|ref|XP_002516727.1| uv excision repair protein rad23, putative [Ricinus communis]
gi|223544100|gb|EEF45625.1| uv excision repair protein rad23, putative [Ricinus communis]
Length = 381
Score = 260 bits (664), Expect = 5e-67, Method: Compositional matrix adjust.
Identities = 149/272 (54%), Positives = 185/272 (68%), Gaps = 11/272 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
MK+ VKTLKG++FEI V+P DTV VK NIE QG D YP QQ+LIH GKVLKD TTL
Sbjct: 1 MKVFVKTLKGTNFEIDVKPEDTVEDVKNNIEIAQGADVYPASQQMLIHQGKVLKDGTTLE 60
Query: 61 DNKVSEDGFLVVMLSKSKTLGSAG--ASSAQPAHTTPPTTAPSSNSTPPQEASVPPPAPT 118
+NKV+E+ F+V+MLSK K S G ASSA P+ P +T P S + P A P A T
Sbjct: 61 ENKVAENSFIVIMLSKRKVSPSGGSTASSAPPSQAQPASTLPPSATQPSTTAQAP--AVT 118
Query: 119 PSIPASNVTSN--VTAANANSDTYGQAASNLVAGNDLEQTIQQIMDMGGGTWDKETVTRA 176
+P S S V ++ +D YGQAASNLVAG++LE T+QQI+DMGGG+WD+ETV RA
Sbjct: 119 AELPQSAAESTPVVNPVSSETDIYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVARA 178
Query: 177 LQAAYNNPERAVDYLYSGIPETAEVAVPVAHFPAS-QAA---ETGAAGAAPVSGVPNSSP 232
L+AA+NNPERAV+YLYSGIPE EV P+ P+S QAA T AAP SG N++P
Sbjct: 179 LRAAFNNPERAVEYLYSGIPEQPEVQ-PLPRAPSSGQAAIPSATAQEPAAPTSGGANANP 237
Query: 233 LNMFPQETLSGAPAGGLGSLDFLRNNQQVWSL 264
L++FPQ + G+LDFLRN+QQ +L
Sbjct: 238 LDLFPQGLPTIGSTTSAGTLDFLRNSQQFQAL 269
>gi|413926348|gb|AFW66280.1| hypothetical protein ZEAMMB73_839350 [Zea mays]
Length = 369
Score = 258 bits (660), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 156/268 (58%), Positives = 195/268 (72%), Gaps = 16/268 (5%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
MKLTVKTLKG+HFEIRVQP+DT+MAVKKNIE++QGKD+YP GQQLLI NGKVLKDE+TL
Sbjct: 1 MKLTVKTLKGTHFEIRVQPNDTIMAVKKNIEEIQGKDSYPWGQQLLIFNGKVLKDESTLE 60
Query: 61 DNKVSEDGFLVVMLSKSKTLGSAGASSAQPAHTTPPTTAPSSNSTPPQEASVPPPAPTPS 120
+NKV+EDGFLVVMLSK KT GS G SS+Q H+ P T + PQ+A PP AP
Sbjct: 61 ENKVNEDGFLVVMLSKGKTSGSTGTSSSQ--HSNTPATRQAPPLEAPQQAPQPPVAPI-- 116
Query: 121 IPASNVTSNVTAANANS-DTYGQAASNLVAGNDLEQTIQQIMDMGGGTWDKETVTRALQA 179
TS A + +T+ AASNL++G +++ I Q+M+MGGG+WDK+ V RAL+A
Sbjct: 117 -----TTSQPEGLPAQAPNTHDNAASNLLSGRNVDTIINQLMEMGGGSWDKDKVQRALRA 171
Query: 180 AYNNPERAVDYLYSGIPETAEVAVPVAHFPA--SQAAETGAAGAAPVSGVPNSSPLNMFP 237
AYNNPERAV+YLYSGIP TAE+AVP+ A + A TG AG +SG+PN++PL++FP
Sbjct: 172 AYNNPERAVEYLYSGIPVTAEIAVPIGGQGANTTDRAPTGEAG---LSGIPNTAPLDLFP 228
Query: 238 QETLSGAPAGGLGS-LDFLRNNQQVWSL 264
Q+ S A G G LDFLRNN Q ++
Sbjct: 229 QQGASNAGGGAGGGPLDFLRNNPQFQAV 256
>gi|225452017|ref|XP_002283656.1| PREDICTED: putative DNA repair protein RAD23-3 isoform 1 [Vitis
vinifera]
gi|296087286|emb|CBI33660.3| unnamed protein product [Vitis vinifera]
Length = 381
Score = 255 bits (652), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 150/278 (53%), Positives = 184/278 (66%), Gaps = 22/278 (7%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
MK+ VKTLKG+HFEI V+P DTV VKKNIE V G D YP QQ+LIH GKVLKD TTL
Sbjct: 1 MKIFVKTLKGTHFEIEVKPEDTVADVKKNIELVHGTDVYPAAQQMLIHQGKVLKDATTLD 60
Query: 61 DNKVSEDGFLVVMLSKSK-------TLGSAGASSAQPAHTTPPTTAPSSNSTPPQEASVP 113
+N+V+E F+V+MLSK+K T +A S AQP ++PPT+ + ST PQ V
Sbjct: 61 ENQVAESSFVVIMLSKNKVSAGGASTTSAAPTSQAQPVSSSPPTS--NQPSTAPQAPVVA 118
Query: 114 PPAPTPSIPASNVTSNVTAANANSDTYGQAASNLVAGNDLEQTIQQIMDMGGGTWDKETV 173
P P PA V ++++ +SD YGQAASNLVAGN+LE TIQQI+DMGGG+WD++TV
Sbjct: 119 LPEVIPE-PAPAVAPSISS---DSDIYGQAASNLVAGNNLEVTIQQILDMGGGSWDRDTV 174
Query: 174 TRALQAAYNNPERAVDYLYSGIPETAEVAVPVAHFPAS-------QAAETGAAGAAPVSG 226
RAL+AAYNNPERAV+YLYSGIPE AE P A PAS A G SG
Sbjct: 175 VRALRAAYNNPERAVEYLYSGIPEQAE-GPPAARPPASGLAVNLPTQAPQGPQTTVASSG 233
Query: 227 VPNSSPLNMFPQETLSGAPAGGLGSLDFLRNNQQVWSL 264
PN++PL++FPQ S G+LDFLRN+ Q +L
Sbjct: 234 -PNANPLDLFPQGLPSMGSNASAGTLDFLRNSPQFQAL 270
>gi|326529487|dbj|BAK04690.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 367
Score = 255 bits (651), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 157/280 (56%), Positives = 193/280 (68%), Gaps = 42/280 (15%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
MKLTVKTLKG+HFEIRVQ +DT+MAVKKNIE++QGKD+YP GQQLLIHNGKVLKDE+TL
Sbjct: 1 MKLTVKTLKGTHFEIRVQHNDTIMAVKKNIEEIQGKDSYPWGQQLLIHNGKVLKDESTLD 60
Query: 61 DNKVSEDGFLVVMLSKSKTLGSAGASSAQPAHTTPPTT--------------APSSNSTP 106
+N+V E GFLVVMLSKSK S+G SSAQP+ +TP T+ PS+ ++
Sbjct: 61 ENQVGEAGFLVVMLSKSKASASSGGSSAQPS-STPVTSQAPPVAQPQAPQPQVPSTTTSQ 119
Query: 107 PQEASVPPPAPTPSIPASNVTSNVTAANANSDTYGQAASNLVAGNDLEQTIQQIMDMGGG 166
P+ PPA TP T AAS+L++G++L+ I QIM+MGGG
Sbjct: 120 PER----PPAETP-----------------LSTVDIAASDLLSGSNLDTMINQIMEMGGG 158
Query: 167 TWDKETVTRALQAAYNNPERAVDYLYSGIPETAEVAVPVAHFPASQAAETGAA--GAAPV 224
+WD++ V RAL+AAYNNPERA+DYLYSGIP TAEVAVPV Q A T AA G +
Sbjct: 159 SWDRDKVQRALRAAYNNPERAIDYLYSGIPVTAEVAVPV----VGQGANTTAAAPGETGL 214
Query: 225 SGVPNSSPLNMFPQETLSGAPAGGLGSLDFLRNNQQVWSL 264
SG+PN++PL++FPQ A G GSLDFLRNNQQ +L
Sbjct: 215 SGIPNTAPLDLFPQGASHAGGAAGGGSLDFLRNNQQFQAL 254
>gi|225452019|ref|XP_002283661.1| PREDICTED: putative DNA repair protein RAD23-3 isoform 2 [Vitis
vinifera]
Length = 361
Score = 255 bits (651), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 152/288 (52%), Positives = 186/288 (64%), Gaps = 22/288 (7%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
MK+ VKTLKG+HFEI V+P DTV VKKNIE V G D YP QQ+LIH GKVLKD TTL
Sbjct: 1 MKIFVKTLKGTHFEIEVKPEDTVADVKKNIELVHGTDVYPAAQQMLIHQGKVLKDATTLD 60
Query: 61 DNKVSEDGFLVVMLSKSK-------TLGSAGASSAQPAHTTPPTTAPSSNSTPPQEASVP 113
+N+V+E F+V+MLSK+K T +A S AQP ++PPT+ + ST PQ V
Sbjct: 61 ENQVAESSFVVIMLSKNKVSAGGASTTSAAPTSQAQPVSSSPPTS--NQPSTAPQAPVVA 118
Query: 114 PPAPTPSIPASNVTSNVTAANANSDTYGQAASNLVAGNDLEQTIQQIMDMGGGTWDKETV 173
P P PA V ++++ +SD YGQAASNLVAGN+LE TIQQI+DMGGG+WD++TV
Sbjct: 119 LPEVIPE-PAPAVAPSISS---DSDIYGQAASNLVAGNNLEVTIQQILDMGGGSWDRDTV 174
Query: 174 TRALQAAYNNPERAVDYLYSGIPETAEVAVPVAHFPAS-------QAAETGAAGAAPVSG 226
RAL+AAYNNPERAV+YLYSGIPE AE P A PAS A G SG
Sbjct: 175 VRALRAAYNNPERAVEYLYSGIPEQAE-GPPAARPPASGLAVNLPTQAPQGPQTTVASSG 233
Query: 227 VPNSSPLNMFPQETLSGAPAGGLGSLDFLRNNQQVWSLLCCQLLFLFQ 274
PN++PL++FPQ S G+LDFLRN+ Q L+ L Q
Sbjct: 234 -PNANPLDLFPQGLPSMGSNASAGTLDFLRNSPQELGKQNPHLMRLIQ 280
>gi|356575536|ref|XP_003555896.1| PREDICTED: putative DNA repair protein RAD23-3-like isoform 2
[Glycine max]
Length = 399
Score = 255 bits (651), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 150/287 (52%), Positives = 191/287 (66%), Gaps = 25/287 (8%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
MK+ VKTLKG+HFEI V P DTV VKKNIE VQG D YP QQ+LIH GKVL+D TTL
Sbjct: 1 MKVFVKTLKGTHFEIEVTPQDTVSEVKKNIETVQGADVYPAAQQMLIHQGKVLRDATTLE 60
Query: 61 DNKVSEDGFLVVMLSKSKTLGSAGASSAQPAHTTPPTTAPSSNSTPP------------- 107
+NKV+E+ F+V+MLSKSK+ G++++ T P T+ STPP
Sbjct: 61 ENKVAENTFIVIMLSKSKSTSGEGSTTSTALSTKAPQTSTVPASTPPVSVAPQAPAPAAT 120
Query: 108 --QEASVPPPAPTPSIPASNVTSNVTAANA--NSDTYGQAASNLVAGNDLEQTIQQIMDM 163
ASV P +PS + + +++ A SD YGQAASNLVAG++LE TIQQI+DM
Sbjct: 121 GALPASVTAPVSSPSPAPAPAPAPISSGTAVEGSDIYGQAASNLVAGSNLEGTIQQILDM 180
Query: 164 GGGTWDKETVTRALQAAYNNPERAVDYLYSGIPETAEVAV----PVAHFPASQAAET--G 217
GGG+WD++TV RAL+AAYNNPERAV+YLY+GIPE AE + PV+ P + A+
Sbjct: 181 GGGSWDRDTVVRALRAAYNNPERAVEYLYTGIPEQAEAPLVARAPVSAQPTNPPADAPQT 240
Query: 218 AAGAAPVSGVPNSSPLNMFPQETLSGAPAGGLGSLDFLRNNQQVWSL 264
A AA S PN++PL++FPQ +SG A G GSLDFLRN+QQ +L
Sbjct: 241 AQPAAVTSAGPNANPLDLFPQVAISG--AAGAGSLDFLRNSQQFQAL 285
>gi|297832888|ref|XP_002884326.1| hypothetical protein ARALYDRAFT_477488 [Arabidopsis lyrata subsp.
lyrata]
gi|297330166|gb|EFH60585.1| hypothetical protein ARALYDRAFT_477488 [Arabidopsis lyrata subsp.
lyrata]
Length = 417
Score = 253 bits (647), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 155/306 (50%), Positives = 195/306 (63%), Gaps = 48/306 (15%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
MK+ VKTLKG+HFEI V+ D+V VKKNIE VQG D YP +Q+LIH GKVLKDETT+
Sbjct: 1 MKIFVKTLKGTHFEIEVKLEDSVADVKKNIETVQGADVYPAAKQMLIHQGKVLKDETTIE 60
Query: 61 DNKVSEDGFLVVMLSKSK---TLGSAGASSAQPAHTTPPTTAPSSNSTPPQE-------- 109
+NKV+E+ F+VVML+KSK T S+ ++ A +TPP+T S S PQ
Sbjct: 61 ENKVAENSFIVVMLNKSKPASTGASSASAGTSQAKSTPPST--SQPSISPQTPASVAAPV 118
Query: 110 ----------------------ASVPPPAPTP-SIPASNVTSNVTAANANSDTYGQAASN 146
+ P P P P +IP+S + A + D YGQAASN
Sbjct: 119 APAPTRAPPPAPTPAPVAATETVTTPIPEPVPATIPSSTPAPDSAPAGSQGDVYGQAASN 178
Query: 147 LVAGNDLEQTIQQIMDMGGGTWDKETVTRALQAAYNNPERAVDYLYSGIPETAEVAVPVA 206
L AG++LE TIQQI+DMGGGTWD+ETV RAL+AA+NNPERAV+YLY+GIPE AEV PVA
Sbjct: 179 LAAGSNLESTIQQILDMGGGTWDRETVVRALRAAFNNPERAVEYLYTGIPEQAEVP-PVA 237
Query: 207 HFPAS------QAAETGAAGAAPVSGVPNSSPLNMFPQ--ETLSGAPAGGLGSLDFLRNN 258
PAS +A+T AAP SG PN++PL++FPQ + G P G G+LDFLRN+
Sbjct: 238 RAPASFGQPANPSAQTQQPAAAPASG-PNANPLDLFPQGLPNVGGNP--GAGTLDFLRNS 294
Query: 259 QQVWSL 264
QQ +L
Sbjct: 295 QQFQAL 300
>gi|334185033|ref|NP_001189793.1| putative DNA repair protein RAD23-3 [Arabidopsis thaliana]
gi|332640305|gb|AEE73826.1| putative DNA repair protein RAD23-3 [Arabidopsis thaliana]
Length = 418
Score = 252 bits (644), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 149/305 (48%), Positives = 196/305 (64%), Gaps = 45/305 (14%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
MK+ VKTLKG+HFEI V+P D+V+ VKKNIE VQG D YP +Q+LIH GKVLKDETT+
Sbjct: 1 MKIFVKTLKGTHFEIEVKPEDSVVDVKKNIESVQGADVYPAAKQMLIHQGKVLKDETTIE 60
Query: 61 DNKVSEDGFLVVMLSKSK------TLGSAGASSAQ--PAHTTPPTTAPSSNST------- 105
+NKV+E+ F+V+M++KSK + SAG S A+ P T+ P+ +P + ++
Sbjct: 61 ENKVAENSFIVIMMNKSKPASAAASSASAGTSQAKSIPPSTSQPSISPQTPASVSAPVAP 120
Query: 106 ------------------PPQEASVPPPAPTPSIPASNVTSNVTAANANSDTYGQAASNL 147
+ + P P P P+ +S+ + +A D YGQAASNL
Sbjct: 121 APTRPPPPAPTPTPAPVAATETVTTPIPEPVPATISSSTPAPDSAPVGQGDVYGQAASNL 180
Query: 148 VAGNDLEQTIQQIMDMGGGTWDKETVTRALQAAYNNPERAVDYLYSGIPETAEVAVPVAH 207
AG++LE TIQQI+DMGGGTWD+ETV AL+AA+NNPERAV+YLY+GIPE AEV PVA
Sbjct: 181 AAGSNLESTIQQILDMGGGTWDRETVVLALRAAFNNPERAVEYLYTGIPEQAEVP-PVAR 239
Query: 208 FPASQA------AETGAAGAAPVSGVPNSSPLNMFPQ--ETLSGAPAGGLGSLDFLRNNQ 259
PAS A+T AAP SG PN++PL++FPQ + G P G G+LDFLRN+Q
Sbjct: 240 PPASAGQPANPPAQTQQPAAAPASG-PNANPLDLFPQGLPNVGGNP--GAGTLDFLRNSQ 296
Query: 260 QVWSL 264
Q +L
Sbjct: 297 QFQAL 301
>gi|413926352|gb|AFW66284.1| hypothetical protein ZEAMMB73_839350 [Zea mays]
Length = 296
Score = 251 bits (640), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 144/241 (59%), Positives = 180/241 (74%), Gaps = 15/241 (6%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
MKLTVKTLKG+HFEIRVQP+DT+MAVKKNIE++QGKD+YP GQQLLI NGKVLKDE+TL
Sbjct: 1 MKLTVKTLKGTHFEIRVQPNDTIMAVKKNIEEIQGKDSYPWGQQLLIFNGKVLKDESTLE 60
Query: 61 DNKVSEDGFLVVMLSKSKTLGSAGASSAQPAHTTPPTTAPSSNSTPPQEASVPPPAPTPS 120
+NKV+EDGFLVVMLSK KT GS G SS+Q H+ P T + PQ+A PP AP
Sbjct: 61 ENKVNEDGFLVVMLSKGKTSGSTGTSSSQ--HSNTPATRQAPPLEAPQQAPQPPVAPI-- 116
Query: 121 IPASNVTSNVTAANANS-DTYGQAASNLVAGNDLEQTIQQIMDMGGGTWDKETVTRALQA 179
TS A + +T+ AASNL++G +++ I Q+M+MGGG+WDK+ V RAL+A
Sbjct: 117 -----TTSQPEGLPAQAPNTHDNAASNLLSGRNVDTIINQLMEMGGGSWDKDKVQRALRA 171
Query: 180 AYNNPERAVDYLYSGIPETAEVAVPVAHFPA--SQAAETGAAGAAPVSGVPNSSPLNMFP 237
AYNNPERAV+YLYSGIP TAE+AVP+ A + A TG AG +SG+PN++PL++FP
Sbjct: 172 AYNNPERAVEYLYSGIPVTAEIAVPIGGQGANTTDRAPTGEAG---LSGIPNTAPLDLFP 228
Query: 238 Q 238
Q
Sbjct: 229 Q 229
>gi|224079274|ref|XP_002305813.1| predicted protein [Populus trichocarpa]
gi|222848777|gb|EEE86324.1| predicted protein [Populus trichocarpa]
Length = 385
Score = 250 bits (639), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 155/277 (55%), Positives = 190/277 (68%), Gaps = 17/277 (6%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
MK+ VKTLKG++FEI V+P DTV VKKNIE VQG D YP QQ+L++ GKVLKD+TTL
Sbjct: 1 MKVFVKTLKGTNFEIEVKPEDTVADVKKNIESVQGADVYPAAQQMLVYQGKVLKDDTTLD 60
Query: 61 DNKVSEDGFLVVMLSKSKTLGSAGASSAQPAHTTPPTTAPS--SNSTPPQEASVPPPAPT 118
+NKVSE F VVMLSKSK + S G S+A A + A S SN T P S P P
Sbjct: 61 ENKVSESSFFVVMLSKSK-VSSGGPSTAPAAPASQAPPASSLPSNVTQPSITS-QAPVPA 118
Query: 119 PSIPASNVTSN---VTAANANSDTYGQAASNLVAGNDLEQTIQQIMDMGGGTWDKETVTR 175
++P S S+ VT+A +++ YGQAASNLVAG++LE TIQ+I+DMGGG W++ETV R
Sbjct: 119 AALPQSAAESSPAVVTSALLDTNMYGQAASNLVAGSNLEATIQEILDMGGGDWNRETVVR 178
Query: 176 ALQAAYNNPERAVDYLYSGIPETAEVAVPVAHF---PASQAAETGAAGA-----APVSGV 227
AL+AA+NNPERA+DYLYSGIPE AEV PVA PAS A A A AP SG
Sbjct: 179 ALRAAFNNPERAIDYLYSGIPEQAEVP-PVAQVVQGPASGNAVNPPALAPQPVVAPNSG- 236
Query: 228 PNSSPLNMFPQETLSGAPAGGLGSLDFLRNNQQVWSL 264
PN++PL++FPQ S G G+LDFLRN+QQ +L
Sbjct: 237 PNANPLDLFPQGHHSTGSNAGTGNLDFLRNSQQFQAL 273
>gi|15232924|ref|NP_186903.1| putative DNA repair protein RAD23-3 [Arabidopsis thaliana]
gi|55976503|sp|Q84L31.2|RD23C_ARATH RecName: Full=Putative DNA repair protein RAD23-3; AltName:
Full=RAD23-like protein 3; Short=AtRAD23-3
gi|6957717|gb|AAF32461.1| putative RAD23 [Arabidopsis thaliana]
gi|14517454|gb|AAK62617.1| AT3g02540/F16B3_17 [Arabidopsis thaliana]
gi|21360453|gb|AAM47342.1| AT3g02540/F16B3_17 [Arabidopsis thaliana]
gi|30409724|dbj|BAC76392.1| RAD23-like protein [Arabidopsis thaliana]
gi|110735092|gb|ABG89116.1| Rad23-1 [synthetic construct]
gi|332640303|gb|AEE73824.1| putative DNA repair protein RAD23-3 [Arabidopsis thaliana]
Length = 419
Score = 250 bits (638), Expect = 5e-64, Method: Compositional matrix adjust.
Identities = 149/306 (48%), Positives = 195/306 (63%), Gaps = 46/306 (15%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
MK+ VKTLKG+HFEI V+P D+V+ VKKNIE VQG D YP +Q+LIH GKVLKDETT+
Sbjct: 1 MKIFVKTLKGTHFEIEVKPEDSVVDVKKNIESVQGADVYPAAKQMLIHQGKVLKDETTIE 60
Query: 61 DNKVSEDGFLVVMLSKSK------TLGSAGASSAQ--PAHTTPPTTAPSSNST------- 105
+NKV+E+ F+V+M++KSK + SAG S A+ P T+ P+ +P + ++
Sbjct: 61 ENKVAENSFIVIMMNKSKPASAAASSASAGTSQAKSIPPSTSQPSISPQTPASVSAPVAP 120
Query: 106 ------------------PPQEASVPPPAPTP-SIPASNVTSNVTAANANSDTYGQAASN 146
+ + P P P P +I +S + + D YGQAASN
Sbjct: 121 APTRPPPPAPTPTPAPVAATETVTTPIPEPVPATISSSTPAPDSAPVGSQGDVYGQAASN 180
Query: 147 LVAGNDLEQTIQQIMDMGGGTWDKETVTRALQAAYNNPERAVDYLYSGIPETAEVAVPVA 206
L AG++LE TIQQI+DMGGGTWD+ETV AL+AA+NNPERAV+YLY+GIPE AEV PVA
Sbjct: 181 LAAGSNLESTIQQILDMGGGTWDRETVVLALRAAFNNPERAVEYLYTGIPEQAEVP-PVA 239
Query: 207 HFPASQA------AETGAAGAAPVSGVPNSSPLNMFPQ--ETLSGAPAGGLGSLDFLRNN 258
PAS A+T AAP SG PN++PL++FPQ + G P G G+LDFLRN+
Sbjct: 240 RPPASAGQPANPPAQTQQPAAAPASG-PNANPLDLFPQGLPNVGGNP--GAGTLDFLRNS 296
Query: 259 QQVWSL 264
QQ +L
Sbjct: 297 QQFQAL 302
>gi|42572233|ref|NP_974211.1| putative DNA repair protein RAD23-3 [Arabidopsis thaliana]
gi|332640304|gb|AEE73825.1| putative DNA repair protein RAD23-3 [Arabidopsis thaliana]
Length = 299
Score = 250 bits (638), Expect = 6e-64, Method: Compositional matrix adjust.
Identities = 149/303 (49%), Positives = 194/303 (64%), Gaps = 46/303 (15%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
MK+ VKTLKG+HFEI V+P D+V+ VKKNIE VQG D YP +Q+LIH GKVLKDETT+
Sbjct: 1 MKIFVKTLKGTHFEIEVKPEDSVVDVKKNIESVQGADVYPAAKQMLIHQGKVLKDETTIE 60
Query: 61 DNKVSEDGFLVVMLSKSK------TLGSAGASSAQ--PAHTTPPTTAPSSNST------- 105
+NKV+E+ F+V+M++KSK + SAG S A+ P T+ P+ +P + ++
Sbjct: 61 ENKVAENSFIVIMMNKSKPASAAASSASAGTSQAKSIPPSTSQPSISPQTPASVSAPVAP 120
Query: 106 ------------------PPQEASVPPPAPTP-SIPASNVTSNVTAANANSDTYGQAASN 146
+ + P P P P +I +S + + D YGQAASN
Sbjct: 121 APTRPPPPAPTPTPAPVAATETVTTPIPEPVPATISSSTPAPDSAPVGSQGDVYGQAASN 180
Query: 147 LVAGNDLEQTIQQIMDMGGGTWDKETVTRALQAAYNNPERAVDYLYSGIPETAEVAVPVA 206
L AG++LE TIQQI+DMGGGTWD+ETV AL+AA+NNPERAV+YLY+GIPE AEV PVA
Sbjct: 181 LAAGSNLESTIQQILDMGGGTWDRETVVLALRAAFNNPERAVEYLYTGIPEQAEVP-PVA 239
Query: 207 HFPASQA------AETGAAGAAPVSGVPNSSPLNMFPQ--ETLSGAPAGGLGSLDFLRNN 258
PAS A+T AAP SG PN++PL++FPQ + G P G G+LDFLRN+
Sbjct: 240 RPPASAGQPANPPAQTQQPAAAPASG-PNANPLDLFPQGLPNVGGNP--GAGTLDFLRNS 296
Query: 259 QQV 261
QQV
Sbjct: 297 QQV 299
>gi|356575534|ref|XP_003555895.1| PREDICTED: putative DNA repair protein RAD23-3-like isoform 1
[Glycine max]
Length = 402
Score = 249 bits (637), Expect = 6e-64, Method: Compositional matrix adjust.
Identities = 149/288 (51%), Positives = 191/288 (66%), Gaps = 24/288 (8%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
MK+ VKTLKG+HFEI V P DTV VKKNIE VQG D YP QQ+LIH GKVL+D TTL
Sbjct: 1 MKVFVKTLKGTHFEIEVTPQDTVSEVKKNIETVQGADVYPAAQQMLIHQGKVLRDATTLE 60
Query: 61 DNKVSEDGFLVVMLSKSKTLGSAGASSAQPAHTTPPTTAPSSNSTPP------------- 107
+NKV+E+ F+V+MLSKSK+ G++++ T P T+ STPP
Sbjct: 61 ENKVAENTFIVIMLSKSKSTSGEGSTTSTALSTKAPQTSTVPASTPPVSVAPQAPAPAAT 120
Query: 108 --QEASVPPPAPTPSIPASNVTSNVTAANA--NSDTYGQAASNLVAGNDLEQTIQQIMDM 163
ASV P +PS + + +++ A SD YGQAASNLVAG++LE TIQQI+DM
Sbjct: 121 GALPASVTAPVSSPSPAPAPAPAPISSGTAVEGSDIYGQAASNLVAGSNLEGTIQQILDM 180
Query: 164 GGGTWDKETVTRALQAAYNNPERAVDYLYSGIPETAEVAV----PVAHFPASQAAET--G 217
GGG+WD++TV RAL+AAYNNPERAV+YLY+GIPE AE + PV+ P + A+
Sbjct: 181 GGGSWDRDTVVRALRAAYNNPERAVEYLYTGIPEQAEAPLVARAPVSAQPTNPPADAPQT 240
Query: 218 AAGAAPVSGVPNSSPLNMFPQETLS-GAPAGGLGSLDFLRNNQQVWSL 264
A AA S PN++PL++FPQ + G+ A G GSLDFLRN+QQ +L
Sbjct: 241 AQPAAVTSAGPNANPLDLFPQGLPNVGSGAAGAGSLDFLRNSQQFQAL 288
>gi|5640111|emb|CAB51544.1| RAD23 protein [Solanum lycopersicum var. cerasiforme]
Length = 389
Score = 248 bits (633), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 141/282 (50%), Positives = 181/282 (64%), Gaps = 23/282 (8%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
MK+ VKTLKG+HFEI V+P D+V VKKNIE VQG+D YP QQ+LIH GKVLKD TTL
Sbjct: 1 MKIFVKTLKGTHFEIEVKPEDSVADVKKNIESVQGQDVYPAAQQMLIHQGKVLKDTTTLE 60
Query: 61 DNKVSEDGFLVVMLSKSKTLGSAGASSAQPAHTTPPTTAPSSNSTPPQEASVPPPAPTPS 120
+NKV+E+ F+V+MLSK+K + S G SS A + TA ST ++ P T +
Sbjct: 61 ENKVAENSFVVIMLSKNK-VSSTGTSSISAALS---NTAQPDGSTDQARQTITTPQATAA 116
Query: 121 IPAS------NVTSNVTAANANSDTYGQAASNLVAGNDLEQTIQQIMDMGGGTWDKETVT 174
+P S AA++ +D Y QAASNLVAG++LE T+QQI+DMGGG+WD++TV
Sbjct: 117 LPQSASESAPTPAPVPAAASSVTDVYDQAASNLVAGSNLETTVQQILDMGGGSWDRDTVV 176
Query: 175 RALQAAYNNPERAVDYLYSGIPETAEVAVPVAHFPASQ------------AAETGAAGAA 222
RAL+AAYNNPERAVDYLYSGIPE E+ A AA+ + A
Sbjct: 177 RALRAAYNNPERAVDYLYSGIPEQTEIPPVARAPAAPAVTAPASAQAINPAAQDASQLAV 236
Query: 223 PVSGVPNSSPLNMFPQETLSGAPAGGLGSLDFLRNNQQVWSL 264
P SG PN++PL++FPQ + G G+LDFLRN+ Q +L
Sbjct: 237 PSSG-PNANPLDLFPQGLTNAGSNAGAGNLDFLRNSPQFQAL 277
>gi|302756389|ref|XP_002961618.1| hypothetical protein SELMODRAFT_77427 [Selaginella moellendorffii]
gi|300170277|gb|EFJ36878.1| hypothetical protein SELMODRAFT_77427 [Selaginella moellendorffii]
Length = 367
Score = 248 bits (633), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 146/272 (53%), Positives = 180/272 (66%), Gaps = 28/272 (10%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
MK++VKTLKG+HF++ VQP+DTV+AVKK IED+QGK+++PC QQLLIH GKVLKDETT+
Sbjct: 1 MKISVKTLKGNHFDLDVQPADTVIAVKKQIEDLQGKESFPCAQQLLIHQGKVLKDETTMD 60
Query: 61 DNKVSEDGFLVVMLSKSKTLGSAGASSAQPAHTTPPTTAPSSNSTPPQEASVPPPAPTPS 120
+NKVSE+GFLVVML+KSK T AP+S+ P +S P AP
Sbjct: 61 ENKVSENGFLVVMLTKSK------------------TAAPTSSGATP--SSTPQAAPATV 100
Query: 121 IPASNVTSNVTAANANSDTYGQAASNLVAGNDLEQTIQQIMDMGGGTWDKETVTRALQAA 180
+ A A SD YGQAASNLVAG LEQTIQQ++DMGGG+WD+++ RAL+AA
Sbjct: 101 TTTPSPAPPAPAPTATSDVYGQAASNLVAGTGLEQTIQQLVDMGGGSWDRDSCARALRAA 160
Query: 181 YNNPERAVDYLYSGIPET--------AEVAVPVAHFPASQAAETGAAGAAPVSGVPNSSP 232
YNNPERAV+YLYSGIP+ A A P A AA TG A +G PN+ P
Sbjct: 161 YNNPERAVEYLYSGIPDVADAPPVARAPPAAPAAATAPPSAAPTGGVPAPAATGGPNAVP 220
Query: 233 LNMFPQETLSGAPAGGLGSLDFLRNNQQVWSL 264
L++FPQ A GG G+LDFLRNN Q +L
Sbjct: 221 LDLFPQVRTPPAGGGGNGALDFLRNNAQFQAL 252
>gi|356536322|ref|XP_003536688.1| PREDICTED: putative DNA repair protein RAD23-3-like [Glycine max]
Length = 408
Score = 247 bits (631), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 151/302 (50%), Positives = 190/302 (62%), Gaps = 46/302 (15%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
MK+ VKTLKG+HFEI V P DTV VKKNIE VQG D YP QQ+LIH GKVL+D +TL
Sbjct: 1 MKVFVKTLKGTHFEIEVTPQDTVSEVKKNIETVQGADVYPAAQQMLIHQGKVLRDASTLE 60
Query: 61 DNKVSEDGFLVVMLSKSKTLGSAGASSAQPAHTTPPTTAPSSNSTPPQEASVPPPA---- 116
+NKV E+ F+V+MLSKSK+ G++++ T P T AP +++ P AS PP +
Sbjct: 61 ENKVVENTFIVIMLSKSKSPSGEGSTTS----TAPSTKAPQTSTVP---ASTPPASVVPQ 113
Query: 117 ------PTPSIPASNVTSNVTA--------------------ANANSDTYGQAASNLVAG 150
+ ++VTA A SD YGQAASNLVAG
Sbjct: 114 ASAPAPAPAPAATGALPASVTAPISSPSPAPAPTPAPISSGTAVEGSDIYGQAASNLVAG 173
Query: 151 NDLEQTIQQIMDMGGGTWDKETVTRALQAAYNNPERAVDYLYSGIPETAEVAVPVAHFPA 210
++LE TIQQI+DMGGG+WD++TV RAL+AAYNNPERAV+YLY+GIPE AE + VA PA
Sbjct: 174 SNLEGTIQQILDMGGGSWDRDTVVRALRAAYNNPERAVEYLYTGIPEQAEAPL-VAQVPA 232
Query: 211 SQAAETGAAGA------APV-SGVPNSSPLNMFPQETLS-GAPAGGLGSLDFLRNNQQVW 262
S A A APV S PN++PL++FPQ + G+ A G GSLDFLRN+QQ
Sbjct: 233 SAQPTNPPADAPQTAQPAPVTSAGPNANPLDLFPQGLPNVGSGAAGAGSLDFLRNSQQFQ 292
Query: 263 SL 264
+L
Sbjct: 293 AL 294
>gi|255636381|gb|ACU18529.1| unknown [Glycine max]
Length = 382
Score = 242 bits (618), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 148/277 (53%), Positives = 183/277 (66%), Gaps = 21/277 (7%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
MK+ VKTLKG+HFEI V PSDT+ VKKNIE VQG D YP QQ+LIH GKVLKD TTL
Sbjct: 1 MKVFVKTLKGTHFEIEVNPSDTLSEVKKNIETVQGADVYPAAQQMLIHQGKVLKDGTTLE 60
Query: 61 DNKVSEDGFLVVMLSK-SKTLGSAGASSAQPAHTTPPTTAPSSNSTPPQEASVPPPAPTP 119
+NKV+E F+V+MLSK S T S S+A A P +T S+ A+ P
Sbjct: 61 ENKVAESSFIVIMLSKPSATPTSTSVSTAPQA---PASTGASATPVTAPTAAPAPAPAPA 117
Query: 120 SIPASNVTSNVTAANANSDTYGQAASNLVAGNDLEQTIQQIMDMGGGTWDKETVTRALQA 179
+ + ++ SD YGQAASNLVAG++LE TIQQI+DMGGG+WD++TV R L+A
Sbjct: 118 APAPAPAPIFSGSSVPESDIYGQAASNLVAGSNLEGTIQQILDMGGGSWDRDTVVRTLRA 177
Query: 180 AYNNPERAVDYLYSGIPETAEVAVPVAHFPAS-----------QAAETGAAGAAPVSGVP 228
AYNNPERAV+YLYSGIPE AE A+PV PAS QAA+ + P SG P
Sbjct: 178 AYNNPERAVEYLYSGIPEQAE-ALPVTGVPASAQPSNPPADTPQAAQ---PASVPSSG-P 232
Query: 229 NSSPLNMFPQETLS-GAPAGGLGSLDFLRNNQQVWSL 264
N++PL++FPQ + G+ A G GSLDFLRN+QQ +L
Sbjct: 233 NANPLDLFPQGLPNVGSGAAGAGSLDFLRNSQQFQAL 269
>gi|363807216|ref|NP_001242098.1| uncharacterized protein LOC100813881 [Glycine max]
gi|255641670|gb|ACU21107.1| unknown [Glycine max]
Length = 400
Score = 242 bits (617), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 149/295 (50%), Positives = 187/295 (63%), Gaps = 39/295 (13%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
MK+ VKTLKG+HFEI V PSDT+ VKKNIE VQG D YP QQ+LIH GKVLKD TTL
Sbjct: 1 MKVFVKTLKGTHFEIEVNPSDTLSEVKKNIETVQGADVYPAAQQMLIHQGKVLKDGTTLE 60
Query: 61 DNKVSEDGFLVVMLSKSKTLGSAGASSAQPAHTTPPTTAPSSNSTPPQEASVPPPAPTPS 120
+NKV+E F+V+MLSK+K+ G++++ A + P+ P+S S S P AP S
Sbjct: 61 ENKVAESSFIVIMLSKTKSSSGEGSTTST-APSAKPSATPTSTSV-----STAPQAPA-S 113
Query: 121 IPASNVTSNVTAANA-----------------------NSDTYGQAASNLVAGNDLEQTI 157
AS A SD YGQAASNLVAG++LE TI
Sbjct: 114 TGASATPVTAPTAAPAPAPAPAAPAPAPAPIFSGSSVPESDIYGQAASNLVAGSNLEGTI 173
Query: 158 QQIMDMGGGTWDKETVTRALQAAYNNPERAVDYLYSGIPETAE----VAVPVAHFPASQA 213
QQI+DMGGG+WD++TV R L+AAYNNPERAV+YLYSGIPE AE VP + P++
Sbjct: 174 QQILDMGGGSWDRDTVVRTLRAAYNNPERAVEYLYSGIPEQAEAPPVTGVPASAQPSNPP 233
Query: 214 AETGAA---GAAPVSGVPNSSPLNMFPQETLS-GAPAGGLGSLDFLRNNQQVWSL 264
A+T A + P SG PN++PL++FPQ + G+ A G GSLDFLRN+QQ +L
Sbjct: 234 ADTPQAAQPASVPSSG-PNANPLDLFPQGLPNVGSGAAGAGSLDFLRNSQQFQAL 287
>gi|90657579|gb|ABD96879.1| hypothetical protein [Cleome spinosa]
Length = 383
Score = 241 bits (616), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 147/274 (53%), Positives = 180/274 (65%), Gaps = 15/274 (5%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
MK+ VKTLKG+HFEI V+P DTV VKKNIE VQG D YP QQ+LIH GKVL+DETT+
Sbjct: 1 MKIFVKTLKGTHFEIEVKPEDTVADVKKNIETVQGADVYPSAQQMLIHQGKVLRDETTME 60
Query: 61 DNKVSEDGFLVVMLSKSKTLGSAGASSAQ---PAHTTPPTTAPSSNSTPPQEASVPPPAP 117
+NKV+E F+V+MLSKS S+ +S P PP AP +++ P P P
Sbjct: 61 ENKVAEKSFIVIMLSKSSKPASSSGASTASAAPTTQAPP--APLASTQPSTSPQTPAPVA 118
Query: 118 TPSIPASNVTSNVTAANANSDTYGQAASNLVAGNDLEQTIQQIMDMGGGTWDKETVTRAL 177
P + A +D YGQAASNLVAG++LE TIQQI+DMGGG+WD++TV RAL
Sbjct: 119 MPQAAPETAPAPAPAV-TQTDIYGQAASNLVAGSNLEATIQQILDMGGGSWDRDTVVRAL 177
Query: 178 QAAYNNPERAVDYLYSGIPETAEVAVPVAHFPASQAAETG-------AAGAAPVSGVPNS 230
+AAYNNPERAV+YLYSGIPE AEV PVA PAS T AAP SG PN+
Sbjct: 178 RAAYNNPERAVEYLYSGIPEQAEVP-PVAQAPASGGQPTNPPAQAGQQPAAAPTSG-PNA 235
Query: 231 SPLNMFPQETLSGAPAGGLGSLDFLRNNQQVWSL 264
+PL++FPQ + G G+LDFLRN+QQ +L
Sbjct: 236 NPLDLFPQGLPNVGSNTGAGTLDFLRNSQQFQAL 269
>gi|358248820|ref|NP_001240201.1| uncharacterized protein LOC100809066 [Glycine max]
gi|255644546|gb|ACU22776.1| unknown [Glycine max]
Length = 392
Score = 239 bits (610), Expect = 9e-61, Method: Compositional matrix adjust.
Identities = 145/287 (50%), Positives = 190/287 (66%), Gaps = 31/287 (10%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
MK+ VKTLKG+HFEI V PSDT+ VKKNIE VQG D YP QQ+LIH GKVLKD TTL
Sbjct: 1 MKVFVKTLKGTHFEIEVNPSDTLSEVKKNIETVQGADVYPAAQQMLIHQGKVLKDGTTLE 60
Query: 61 DNKVSEDGFLVVMLSKSKTLGSAGASSAQPAHTTPPTTAPSSNSTPPQEASVPPPAPTPS 120
+NKV+E+ F+V+MLSK+K+ G++++ A + + P+S S S P AP +
Sbjct: 61 ENKVAENSFIVIMLSKTKSSSGEGSTTST-APSVKASATPTSTSV-----SAAPQAPAST 114
Query: 121 ------------IPASNVTSNVTAANA--NSDTYGQAASNLVAGNDLEQTIQQIMDMGGG 166
++ + +++ +A SD YGQAASNLVAG++LE TIQQI+DMGGG
Sbjct: 115 GATPTPVTAPAAPASAAAPAPISSGSAVPESDIYGQAASNLVAGSNLEGTIQQILDMGGG 174
Query: 167 TWDKETVTRALQAAYNNPERAVDYLYSGIPETAEVAVPVAH--------FPASQAAETGA 218
+WD++TV RAL+AAYNNPERAV+YLYSGIPE AE A PV P + A +
Sbjct: 175 SWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAE-APPVTREPASAQPANPPAAAPQAAQ 233
Query: 219 AGAAPVSGVPNSSPLNMFPQETLS-GAPAGGLGSLDFLRNNQQVWSL 264
+ P SG PN++PL++FPQ + G+ A G GSLDFLRN+QQ +L
Sbjct: 234 PASVPSSG-PNANPLDLFPQGLPNVGSGAAGAGSLDFLRNSQQFQAL 279
>gi|356575538|ref|XP_003555897.1| PREDICTED: putative DNA repair protein RAD23-3-like isoform 3
[Glycine max]
Length = 381
Score = 239 bits (609), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 143/271 (52%), Positives = 184/271 (67%), Gaps = 11/271 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
MK+ VKTLKG+HFEI V P DTV VKKNIE VQG D YP QQ+LIH GKVL+D TTL
Sbjct: 1 MKVFVKTLKGTHFEIEVTPQDTVSEVKKNIETVQGADVYPAAQQMLIHQGKVLRDATTLE 60
Query: 61 DNKVSEDGFLVVMLSKSKTLGSAGASSAQPAHTTPPTTAPSSNSTPPQEASVPPPAPTPS 120
+NKV+E+ F+V+MLSK+ T+ +S P P AP++ P + P +P+P+
Sbjct: 61 ENKVAENTFIVIMLSKTSTV----PASTPPVSVAPQAPAPAATGALPASVTAPVSSPSPA 116
Query: 121 IPASNVTSNVTAANANSDTYGQAASNLVAGNDLEQTIQQIMDMGGGTWDKETVTRALQAA 180
+ + A SD YGQAASNLVAG++LE TIQQI+DMGGG+WD++TV RAL+AA
Sbjct: 117 PAPAPAPISSGTAVEGSDIYGQAASNLVAGSNLEGTIQQILDMGGGSWDRDTVVRALRAA 176
Query: 181 YNNPERAVDYLYSGIPETAEVAV----PVAHFPASQAAET--GAAGAAPVSGVPNSSPLN 234
YNNPERAV+YLY+GIPE AE + PV+ P + A+ A AA S PN++PL+
Sbjct: 177 YNNPERAVEYLYTGIPEQAEAPLVARAPVSAQPTNPPADAPQTAQPAAVTSAGPNANPLD 236
Query: 235 MFPQETLS-GAPAGGLGSLDFLRNNQQVWSL 264
+FPQ + G+ A G GSLDFLRN+QQ +L
Sbjct: 237 LFPQGLPNVGSGAAGAGSLDFLRNSQQFQAL 267
>gi|414885361|tpg|DAA61375.1| TPA: hypothetical protein ZEAMMB73_350633 [Zea mays]
Length = 339
Score = 238 bits (608), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 139/274 (50%), Positives = 181/274 (66%), Gaps = 19/274 (6%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
MK++VKTLKGS F I V P+D V VKK IE +Q + +YP QQ+LIH GKVLKD+TTL
Sbjct: 1 MKVSVKTLKGSSFHIEVDPTDKVADVKKVIESIQEQASYPADQQVLIHQGKVLKDDTTLE 60
Query: 61 DNKVSEDGFLVVMLSKSKTLGSAGASSAQPAHTTPPTTAPSSNSTP--PQEASVPPPAPT 118
+N+V E+ FLV+ML ++K G+SSA PA T APS+ + P P + S P AP
Sbjct: 61 ENQVVENNFLVIMLRQNK-----GSSSAAPAKVTA-NQAPSTQTVPATPPQTSAAPDAPA 114
Query: 119 PSIPASNVTSNVTAANA-------NSDTYGQAASNLVAGNDLEQTIQQIMDMGGGTWDKE 171
P +P S + TA+ A +D+YGQA SNLVAG++LE TI+ I++MGGGTWD++
Sbjct: 115 PIVPVSAPAATATASAAPAVAVSTEADSYGQATSNLVAGSNLEGTIKSILEMGGGTWDRD 174
Query: 172 TVTRALQAAYNNPERAVDYLYSGIPETAEVAVPVAHFPASQAAETGAAGAAPVSGVPNSS 231
TV RAL+AAYNNPERAV+YLYSGIPE EV P P+SQ + A P PN++
Sbjct: 175 TVLRALRAAYNNPERAVEYLYSGIPEQMEVPAPP---PSSQPVDPVQA-VQPAQAGPNAN 230
Query: 232 PLNMFPQETLSGAPAGGLGSLDFLRNNQQVWSLL 265
PL++FPQ + + G+LD LRNN Q +LL
Sbjct: 231 PLDLFPQSLPNDSANANTGNLDVLRNNSQFQNLL 264
>gi|194700232|gb|ACF84200.1| unknown [Zea mays]
gi|195625372|gb|ACG34516.1| DNA repair protein RAD23 [Zea mays]
gi|414885362|tpg|DAA61376.1| TPA: DNA repair protein RAD23 [Zea mays]
Length = 386
Score = 238 bits (607), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 139/274 (50%), Positives = 181/274 (66%), Gaps = 19/274 (6%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
MK++VKTLKGS F I V P+D V VKK IE +Q + +YP QQ+LIH GKVLKD+TTL
Sbjct: 1 MKVSVKTLKGSSFHIEVDPTDKVADVKKVIESIQEQASYPADQQVLIHQGKVLKDDTTLE 60
Query: 61 DNKVSEDGFLVVMLSKSKTLGSAGASSAQPAHTTPPTTAPSSNSTP--PQEASVPPPAPT 118
+N+V E+ FLV+ML ++K G+SSA PA T APS+ + P P + S P AP
Sbjct: 61 ENQVVENNFLVIMLRQNK-----GSSSAAPAKVTA-NQAPSTQTVPATPPQTSAAPDAPA 114
Query: 119 PSIPASNVTSNVTAANA-------NSDTYGQAASNLVAGNDLEQTIQQIMDMGGGTWDKE 171
P +P S + TA+ A +D+YGQA SNLVAG++LE TI+ I++MGGGTWD++
Sbjct: 115 PIVPVSAPAATATASAAPAVAVSTEADSYGQATSNLVAGSNLEGTIKSILEMGGGTWDRD 174
Query: 172 TVTRALQAAYNNPERAVDYLYSGIPETAEVAVPVAHFPASQAAETGAAGAAPVSGVPNSS 231
TV RAL+AAYNNPERAV+YLYSGIPE EV P P+SQ + A P PN++
Sbjct: 175 TVLRALRAAYNNPERAVEYLYSGIPEQMEVPAPP---PSSQPVDPVQA-VQPAQAGPNAN 230
Query: 232 PLNMFPQETLSGAPAGGLGSLDFLRNNQQVWSLL 265
PL++FPQ + + G+LD LRNN Q +LL
Sbjct: 231 PLDLFPQSLPNDSANANTGNLDVLRNNSQFQNLL 264
>gi|449530301|ref|XP_004172134.1| PREDICTED: putative DNA repair protein RAD23-3-like [Cucumis
sativus]
Length = 407
Score = 237 bits (604), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 146/309 (47%), Positives = 187/309 (60%), Gaps = 49/309 (15%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
MK+ VKTLKGSHFEI VQP+DTV VKKNIE VQG D YP QQ+LIH GKVLKD +TL
Sbjct: 1 MKIFVKTLKGSHFEIEVQPADTVADVKKNIETVQGADVYPAAQQMLIHQGKVLKDSSTLE 60
Query: 61 DNKVSEDGFLVVMLSKSKTLGSAGASS--AQPAHTTPPTTAPSSNSTPPQEASVPPPAPT 118
+NKV+E+ F+V+ML+K+K+ +S+ A P P +TAP+ +TP VP P
Sbjct: 61 ENKVAENSFIVIMLTKNKSSSGGTSSTTHAAPVAKAPQSTAPAPAATPVSTTEVPLPTSA 120
Query: 119 PSIPASNVTSN----------------------------------VTAANANSDTYGQAA 144
P PAS S+ T ++D Y QAA
Sbjct: 121 P--PASVTASSPPAPSPTPVPVPAPAPAPTPTPTPTPAAAPAPSLATTVLPDADVYSQAA 178
Query: 145 SNLVAGNDLEQTIQQIMDMGGGTWDKETVTRALQAAYNNPERAVDYLYSGIPETAEVAVP 204
SNLVAG++LE+T+QQI+DMG G WD++TV RAL+AAYNNPERAVDYLYSGIPE +V P
Sbjct: 179 SNLVAGSNLEETVQQILDMGEGVWDRDTVVRALRAAYNNPERAVDYLYSGIPE--QVEAP 236
Query: 205 VAHFPASQAAETGAAGAAPVSGV--------PNSSPLNMFPQETLS-GAPAGGLGSLDFL 255
A P++ A +A A + PN++PL++FPQ + G+ A G GSLDFL
Sbjct: 237 PARVPSTVQASNPSAQPAQPAQPASAPSSTGPNANPLDLFPQGLPNLGSGAVGSGSLDFL 296
Query: 256 RNNQQVWSL 264
RN+ Q +L
Sbjct: 297 RNSPQFQAL 305
>gi|449434628|ref|XP_004135098.1| PREDICTED: putative DNA repair protein RAD23-3-like [Cucumis
sativus]
Length = 407
Score = 237 bits (604), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 146/309 (47%), Positives = 187/309 (60%), Gaps = 49/309 (15%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
MK+ VKTLKGSHFEI VQP+DTV VKKNIE VQG D YP QQ+LIH GKVLKD +TL
Sbjct: 1 MKIFVKTLKGSHFEIEVQPADTVADVKKNIETVQGADVYPAAQQMLIHQGKVLKDSSTLE 60
Query: 61 DNKVSEDGFLVVMLSKSKTLGSAGASS--AQPAHTTPPTTAPSSNSTPPQEASVPPPAPT 118
+NKV+E+ F+V+ML+K+K+ +S+ A P P +TAP+ +TP VP P
Sbjct: 61 ENKVAENSFIVIMLTKNKSSSGGTSSTTHAAPVAKAPQSTAPAPAATPVSTTEVPLPTSA 120
Query: 119 PSIPASNVTSN----------------------------------VTAANANSDTYGQAA 144
P PAS S+ T ++D Y QAA
Sbjct: 121 P--PASVTASSPPAPSPTPVPVPAPAPAPTPTPTPTPAAAPAPSLATTVLPDADVYSQAA 178
Query: 145 SNLVAGNDLEQTIQQIMDMGGGTWDKETVTRALQAAYNNPERAVDYLYSGIPETAEVAVP 204
SNLVAG++LE+T+QQI+DMG G WD++TV RAL+AAYNNPERAVDYLYSGIPE +V P
Sbjct: 179 SNLVAGSNLEETVQQILDMGEGVWDRDTVVRALRAAYNNPERAVDYLYSGIPE--QVEAP 236
Query: 205 VAHFPASQAAETGAAGAAPVSGV--------PNSSPLNMFPQETLS-GAPAGGLGSLDFL 255
A P++ A +A A + PN++PL++FPQ + G+ A G GSLDFL
Sbjct: 237 PARVPSTVQASNPSAQPAQPAQPASAPSSTGPNANPLDLFPQGLPNLGSGAVGSGSLDFL 296
Query: 256 RNNQQVWSL 264
RN+ Q +L
Sbjct: 297 RNSPQFQAL 305
>gi|77745475|gb|ABB02636.1| RAD23-like [Solanum tuberosum]
Length = 384
Score = 235 bits (600), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 139/280 (49%), Positives = 182/280 (65%), Gaps = 24/280 (8%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
MK+ VKTLKG+HFEI V+P DTV VKK+IE VQG+D YP QQ+LIH KVLKD TTL
Sbjct: 1 MKIFVKTLKGTHFEIEVKPEDTVADVKKSIETVQGQDVYPAAQQMLIHQVKVLKDPTTLD 60
Query: 61 DNKVSEDGFLVVMLSKSKTLGSAGASSAQPAHTTPPTTAPSSNSTPPQEASVPPPAPTPS 120
+NKV+E+ F+V+MLSK+K + ++G S+ QPA P +A + ST +V P A S
Sbjct: 61 ENKVAENSFVVIMLSKNK-VSTSGTSATQPA---PSNSAQPATSTGQPTQTVAPQATAAS 116
Query: 121 IPASNVTSNVTAANAN------------SDTYGQAASNLVAGNDLEQTIQQIMDMGGGTW 168
+ + A A +D YGQAASNLVAG+ LE T+QQI+DMGGG+W
Sbjct: 117 VAPAQSAPAPAPAPAPAPAPAPAAANPLTDVYGQAASNLVAGSTLETTVQQILDMGGGSW 176
Query: 169 DKETVTRALQAAYNNPERAVDYLYSGIPETAEV--AVPVAHFPASQAAETGAAGAAPV-- 224
+++TV RAL+AAYNNPERA++YLYSGIPE AE+ A PV + QA + P
Sbjct: 177 ERDTVVRALRAAYNNPERAIEYLYSGIPEQAEIPPAAPV----SGQAVNPPVQASPPAVP 232
Query: 225 SGVPNSSPLNMFPQETLSGAPAGGLGSLDFLRNNQQVWSL 264
SG PN++PL++FPQ + G G+LDFL N+ Q +L
Sbjct: 233 SGGPNANPLDLFPQGLPNVGSNVGAGNLDFLSNSPQFQAL 272
>gi|224284592|gb|ACN40029.1| unknown [Picea sitchensis]
Length = 403
Score = 235 bits (599), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 146/294 (49%), Positives = 182/294 (61%), Gaps = 34/294 (11%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
MK++VKTLKG+HF+I VQP+DTV+ VKK IE VQG YP QQLLI+ GKVLKDETT+
Sbjct: 1 MKVSVKTLKGNHFDIEVQPTDTVLNVKKQIEQVQGAQTYPSEQQLLIYQGKVLKDETTIE 60
Query: 61 DNKVSEDGFLVVMLSKSKTLGSAGASSAQPAHTTPPTT--APSSNSTPPQEASVPPPAPT 118
+NKV+E+ FLVVMLSK+K +AG SS Q A PP+ AP+ N P A+ +
Sbjct: 61 ENKVTENTFLVVMLSKTKAT-TAGTSSTQQA---PPSVSPAPAQNPVAPVPAAAAAQLSS 116
Query: 119 PSIPASNVTSNVTAANANSDTYGQAASNLVAGNDLEQTIQQIMDMGGGTWDKETVTRALQ 178
+ + T+ ++D YGQAASNLVAGN+LE IQQI+DMGGG+WD++TV RAL+
Sbjct: 117 LAPATATPTAGAGTTQTDADVYGQAASNLVAGNNLEHVIQQILDMGGGSWDRDTVVRALR 176
Query: 179 AAYNNPERAVDYLYSGIPETAEVAVPVAHFPASQAAETGAAGAAPVSGV----------- 227
AAYNNPERAV+YLYSGIPETAEVA PVA S AP +
Sbjct: 177 AAYNNPERAVEYLYSGIPETAEVAPPVARPTPSVGQAANPTAPAPAAAAAAAAASATAQA 236
Query: 228 -PNSSPLNMFPQ----------------ETLSGAPAGGLGSLDFLRNNQQVWSL 264
PN++PL++FPQ G G+LDFLRNN Q +L
Sbjct: 237 GPNAAPLDLFPQGLPNLGAGAGAGAGAGLGAGAGAGAGAGALDFLRNNPQFQAL 290
>gi|30409730|dbj|BAC76395.1| RAD23-like protein [Arabidopsis thaliana]
Length = 343
Score = 235 bits (599), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 142/282 (50%), Positives = 185/282 (65%), Gaps = 35/282 (12%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
MK+ VKTL GS+FEI V+P+D V VK IE V+G + YP +Q+LIH GKVLKDETTL
Sbjct: 1 MKIFVKTLSGSNFEIEVKPADKVSDVKTAIETVKGAE-YPAAKQMLIHQGKVLKDETTLE 59
Query: 61 DNKVSEDGFLVVMLSKSKTLGSAGASSAQPAHTTPPTTAPSSNSTPPQEASVPP-PAPTP 119
+N V E+ F+V+MLSK+K +GAS+A +AP+ ++T PQ + P APT
Sbjct: 60 ENNVVENSFIVIMLSKTKA-SPSGASTA---------SAPAPSATQPQTVATPQVSAPTA 109
Query: 120 SIPA-----SNVTSNVTAANANSDTYGQAASNLVAGNDLEQTIQQIMDMGGGTWDKETVT 174
S+P + + TAA+ +D YGQAASNLVAG LE T+QQI+DMGGG+WD++TV
Sbjct: 110 SVPVPTSGTATAAAPATAASVQTDVYGQAASNLVAGTTLESTVQQILDMGGGSWDRDTVV 169
Query: 175 RALQAAYNNPERAVDYLYSGIPETAEVAVPVAHFPASQAAETGAAGAAPV---------- 224
RAL+AA+NNPERAV+YLYSGIP AE+ PVA PA TG A P+
Sbjct: 170 RALRAAFNNPERAVEYLYSGIPAQAEIP-PVAQAPA-----TGEQAANPLAQPQQAAAPA 223
Query: 225 --SGVPNSSPLNMFPQETLSGAPAGGLGSLDFLRNNQQVWSL 264
+G PN++PLN+FPQ + G G+LDFLRN+QQ +L
Sbjct: 224 AATGGPNANPLNLFPQGMPAADAGAGAGNLDFLRNSQQFQAL 265
>gi|15240922|ref|NP_198663.1| putative DNA repair protein RAD23-4 [Arabidopsis thaliana]
gi|55976502|sp|Q84L30.2|RD23D_ARATH RecName: Full=Putative DNA repair protein RAD23-4; AltName:
Full=RAD23-like protein 4; Short=AtRAD23-4
gi|9758825|dbj|BAB09359.1| DNA repair protein RAD23 homolog [Arabidopsis thaliana]
gi|16648838|gb|AAL25609.1| unknown protein [Arabidopsis thaliana]
gi|19548081|gb|AAL87405.1| At5g38470/At5g38470 [Arabidopsis thaliana]
gi|21593157|gb|AAM65106.1| DNA repair protein RAD23 homolog [Arabidopsis thaliana]
gi|30409728|dbj|BAC76394.1| RAD23-like protein [Arabidopsis thaliana]
gi|110735094|gb|ABG89117.1| Rad23-2 [synthetic construct]
gi|332006938|gb|AED94321.1| putative DNA repair protein RAD23-4 [Arabidopsis thaliana]
Length = 378
Score = 234 bits (598), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 142/282 (50%), Positives = 185/282 (65%), Gaps = 35/282 (12%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
MK+ VKTL GS+FEI V+P+D V VK IE V+G + YP +Q+LIH GKVLKDETTL
Sbjct: 1 MKIFVKTLSGSNFEIEVKPADKVSDVKTAIETVKGAE-YPAAKQMLIHQGKVLKDETTLE 59
Query: 61 DNKVSEDGFLVVMLSKSKTLGSAGASSAQPAHTTPPTTAPSSNSTPPQEASVPP-PAPTP 119
+N V E+ F+V+MLSK+K +GAS+A +AP+ ++T PQ + P APT
Sbjct: 60 ENNVVENSFIVIMLSKTKA-SPSGASTA---------SAPAPSATQPQTVATPQVSAPTA 109
Query: 120 SIPA-----SNVTSNVTAANANSDTYGQAASNLVAGNDLEQTIQQIMDMGGGTWDKETVT 174
S+P + + TAA+ +D YGQAASNLVAG LE T+QQI+DMGGG+WD++TV
Sbjct: 110 SVPVPTSGTATAAAPATAASVQTDVYGQAASNLVAGTTLESTVQQILDMGGGSWDRDTVV 169
Query: 175 RALQAAYNNPERAVDYLYSGIPETAEVAVPVAHFPASQAAETGAAGAAPV---------- 224
RAL+AA+NNPERAV+YLYSGIP AE+ PVA PA TG A P+
Sbjct: 170 RALRAAFNNPERAVEYLYSGIPAQAEIP-PVAQAPA-----TGEQAANPLAQPQQAAAPA 223
Query: 225 --SGVPNSSPLNMFPQETLSGAPAGGLGSLDFLRNNQQVWSL 264
+G PN++PLN+FPQ + G G+LDFLRN+QQ +L
Sbjct: 224 AATGGPNANPLNLFPQGMPAADAGAGAGNLDFLRNSQQFQAL 265
>gi|77999269|gb|ABB16981.1| unknown [Solanum tuberosum]
Length = 382
Score = 234 bits (598), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 138/276 (50%), Positives = 181/276 (65%), Gaps = 18/276 (6%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
MK+ VKTLKG+HFEI V+P DTV VKK+IE VQG+D YP QQ+LI GKVLKD TTL
Sbjct: 1 MKIFVKTLKGTHFEIEVKPEDTVADVKKSIETVQGQDVYPAAQQMLIPPGKVLKDPTTLE 60
Query: 61 DNKVSEDGFLVVMLSKSKTLGSAGASSAQPAHTTPPTTAPSSNSTPPQEASVPPPAPTPS 120
+NKV+E+ F+V+MLSK+K + ++G S+ QPA P +A + ST +V P A S
Sbjct: 61 ENKVAENSFVVIMLSKNK-VSTSGTSATQPA---PSNSAQPATSTGQPTQTVAPQATAAS 116
Query: 121 IPASNVTSNVTAANAN----------SDTYGQAASNLVAGNDLEQTIQQIMDMGGGTWDK 170
+ + A A +D YGQAASNLVAG+ LE T+QQI+DMGGG+W++
Sbjct: 117 VAPAQSAPAPAPAPAPAPAPAAANPLTDVYGQAASNLVAGSTLETTVQQILDMGGGSWER 176
Query: 171 ETVTRALQAAYNNPERAVDYLYSGIPETAEVAVPVAHFPASQAAETGAAGAAPV--SGVP 228
+TV RAL+AAYNNPERA++YLYSGIPE AE +P A + QA + P SG P
Sbjct: 177 DTVVRALRAAYNNPERAIEYLYSGIPEQAE--IPPAAPASGQAVNPPVQASQPAVPSGGP 234
Query: 229 NSSPLNMFPQETLSGAPAGGLGSLDFLRNNQQVWSL 264
N++PL++FPQ + G G+LDFL N+ Q +L
Sbjct: 235 NANPLDLFPQGLPNVGSNVGAGNLDFLSNSPQFQAL 270
>gi|145334669|ref|NP_001078680.1| putative DNA repair protein RAD23-4 [Arabidopsis thaliana]
gi|332006939|gb|AED94322.1| putative DNA repair protein RAD23-4 [Arabidopsis thaliana]
Length = 332
Score = 233 bits (595), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 142/282 (50%), Positives = 185/282 (65%), Gaps = 35/282 (12%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
MK+ VKTL GS+FEI V+P+D V VK IE V+G + YP +Q+LIH GKVLKDETTL
Sbjct: 1 MKIFVKTLSGSNFEIEVKPADKVSDVKTAIETVKGAE-YPAAKQMLIHQGKVLKDETTLE 59
Query: 61 DNKVSEDGFLVVMLSKSKTLGSAGASSAQPAHTTPPTTAPSSNSTPPQEASVPP-PAPTP 119
+N V E+ F+V+MLSK+K +GAS+A +AP+ ++T PQ + P APT
Sbjct: 60 ENNVVENSFIVIMLSKTKA-SPSGASTA---------SAPAPSATQPQTVATPQVSAPTA 109
Query: 120 SIPA-----SNVTSNVTAANANSDTYGQAASNLVAGNDLEQTIQQIMDMGGGTWDKETVT 174
S+P + + TAA+ +D YGQAASNLVAG LE T+QQI+DMGGG+WD++TV
Sbjct: 110 SVPVPTSGTATAAAPATAASVQTDVYGQAASNLVAGTTLESTVQQILDMGGGSWDRDTVV 169
Query: 175 RALQAAYNNPERAVDYLYSGIPETAEVAVPVAHFPASQAAETGAAGAAPV---------- 224
RAL+AA+NNPERAV+YLYSGIP AE+ PVA PA TG A P+
Sbjct: 170 RALRAAFNNPERAVEYLYSGIPAQAEIP-PVAQAPA-----TGEQAANPLAQPQQAAAPA 223
Query: 225 --SGVPNSSPLNMFPQETLSGAPAGGLGSLDFLRNNQQVWSL 264
+G PN++PLN+FPQ + G G+LDFLRN+QQ +L
Sbjct: 224 AATGGPNANPLNLFPQGMPAADAGAGAGNLDFLRNSQQFQAL 265
>gi|14335004|gb|AAK59766.1| unknown protein [Arabidopsis thaliana]
Length = 378
Score = 233 bits (594), Expect = 7e-59, Method: Compositional matrix adjust.
Identities = 141/282 (50%), Positives = 184/282 (65%), Gaps = 35/282 (12%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
MK+ VKTL GS+FEI V+P+D V VK IE V+G + YP +Q+LIH GKVLKDETTL
Sbjct: 1 MKIFVKTLSGSNFEIEVKPADKVSDVKTAIETVKGAE-YPAAKQMLIHQGKVLKDETTLE 59
Query: 61 DNKVSEDGFLVVMLSKSKTLGSAGASSAQPAHTTPPTTAPSSNSTPPQEASVPP-PAPTP 119
+N V E+ F+V+MLSK+K +GAS+A +AP+ ++T PQ + P APT
Sbjct: 60 ENNVVENSFIVIMLSKTKA-SPSGASTA---------SAPAPSATQPQTVATPQVSAPTA 109
Query: 120 SIPA-----SNVTSNVTAANANSDTYGQAASNLVAGNDLEQTIQQIMDMGGGTWDKETVT 174
S+P + + TAA+ +D YGQAASNLVAG LE T+QQI+DMGGG+WD++TV
Sbjct: 110 SVPVPTSGTATAAAPATAASVQTDVYGQAASNLVAGTTLESTVQQILDMGGGSWDRDTVV 169
Query: 175 RALQAAYNNPERAVDYLYSGIPETAEVAVPVAHFPASQAAETGAAGAAPV---------- 224
RAL+AA+NNPERAV+YLYSGIP AE+ PVA PA TG A P+
Sbjct: 170 RALRAAFNNPERAVEYLYSGIPAQAEIP-PVAQAPA-----TGEQAANPLAQPQQAAAPA 223
Query: 225 --SGVPNSSPLNMFPQETLSGAPAGGLGSLDFLRNNQQVWSL 264
+G PN++PLN+FPQ + G G+LDFLRN+ Q +L
Sbjct: 224 AATGGPNANPLNLFPQGMPAADAGAGAGNLDFLRNSHQFQAL 265
>gi|302762537|ref|XP_002964690.1| hypothetical protein SELMODRAFT_82644 [Selaginella moellendorffii]
gi|300166923|gb|EFJ33528.1| hypothetical protein SELMODRAFT_82644 [Selaginella moellendorffii]
Length = 385
Score = 233 bits (593), Expect = 8e-59, Method: Compositional matrix adjust.
Identities = 141/273 (51%), Positives = 186/273 (68%), Gaps = 12/273 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
MK++VKTLKG+HF++ VQP+DTV+AVKK IED+QGK+++PC QQLLIH GKVLKDETT+
Sbjct: 1 MKISVKTLKGNHFDLDVQPADTVIAVKKQIEDLQGKESFPCAQQLLIHQGKVLKDETTMD 60
Query: 61 DNKVSEDGFLVVMLSKSKTLGSAGASSAQPAHTTPPTTAPSSNSTPPQEASVPPPAPTPS 120
+NKVSE+GFLVVML+KS+ S+G + + ++ ++ +S+S+ +V +
Sbjct: 61 ENKVSENGFLVVMLTKSR---SSGIARCSSSSSSSSSSPSTSSSSGSGCYAVSKFSLLHL 117
Query: 121 IPAS-NVTSNVTAANANSDTYGQAASNLVAGNDLEQTIQQIMDMGGGTWDKETVTRALQA 179
S ++ A SD YGQAASNLVAG LEQTIQQ++DMGGG+WD+++ RAL+A
Sbjct: 118 FWCSLSLVFLRRPPAATSDVYGQAASNLVAGTGLEQTIQQLVDMGGGSWDRDSCVRALRA 177
Query: 180 AYNNPERAVDYLYSGIPET--------AEVAVPVAHFPASQAAETGAAGAAPVSGVPNSS 231
AYNNPERAV+YLYSGIP+ A A P A AA TG A +G PN+
Sbjct: 178 AYNNPERAVEYLYSGIPDVADAPPVARAPPAAPAAATAPPTAAPTGGVPAPAATGGPNAV 237
Query: 232 PLNMFPQETLSGAPAGGLGSLDFLRNNQQVWSL 264
PL++FPQ A GG G+LDFLRNN Q +L
Sbjct: 238 PLDLFPQVRTPPAGGGGNGALDFLRNNAQFQAL 270
>gi|357158333|ref|XP_003578094.1| PREDICTED: probable DNA repair protein RAD23-like isoform 1
[Brachypodium distachyon]
Length = 395
Score = 231 bits (589), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 141/284 (49%), Positives = 182/284 (64%), Gaps = 21/284 (7%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
MK++VKTLKGS F+I V P+D V VKK IE QG++ YP QQ+LIH G VLKD+TTL
Sbjct: 1 MKVSVKTLKGSSFQIEVNPADKVSDVKKLIESSQGQNVYPADQQMLIHQGTVLKDDTTLE 60
Query: 61 DNKVSEDGFLVVMLSKSKTLGSAG-ASSAQPAHTTPPTTAPSSNSTPPQEASVPPP---- 115
++KV E+ FLV+ML ++K SA A S +P++ PPT +N PP +A V P
Sbjct: 61 ESKVLENNFLVIMLRQNKGSSSAAPAKSKEPSNQAPPTQTVPAN--PPSQAPVVPAPPAA 118
Query: 116 ----------APTPSIPASNVTSNVTAANANSDTYGQAASNLVAGNDLEQTIQQIMDMGG 165
APTP+ AS ++ A + ++TYGQAASNLVAG +LE TIQ I++MGG
Sbjct: 119 AAPAPIVPISAPTPTATAS--PASAVAVSTEAETYGQAASNLVAGGNLEATIQSILEMGG 176
Query: 166 GTWDKETVTRALQAAYNNPERAVDYLYSGIPETAEVAVPVAHFPASQAAET-GAAGAAPV 224
GTWD++TV RAL+AA+NNPERAV+YLYSGIPE E+ P + + A A
Sbjct: 177 GTWDRDTVLRALRAAFNNPERAVEYLYSGIPEPMEIPAPPPSAQPADPVQALQATQPAVA 236
Query: 225 SGVPNSSPLNMFPQET-LSGAPAGGLGSLDFLRNNQQVWSLLCC 267
S PN+SPL++FPQ + A A G G+LD LRNN Q SLL
Sbjct: 237 SSGPNASPLDLFPQALPNASANAAGEGNLDVLRNNAQFRSLLSL 280
>gi|224111696|ref|XP_002315945.1| predicted protein [Populus trichocarpa]
gi|222864985|gb|EEF02116.1| predicted protein [Populus trichocarpa]
Length = 378
Score = 230 bits (586), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 139/274 (50%), Positives = 179/274 (65%), Gaps = 19/274 (6%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
MK+ VKTLKGS F+I V+P DTV VKKNIE QG YP QQ+LI+ GKVLKD+TTL
Sbjct: 1 MKIFVKTLKGSTFDIEVKPGDTVADVKKNIETAQGASVYPAEQQMLIYQGKVLKDDTTLG 60
Query: 61 DNKVSEDGFLVVMLSKSK---TLGSAGASSAQPAHTTPPTTAPSSNSTPPQEASVPPPAP 117
+NKV+E+ F+V+MLSK+K GS +++ P T PT+ PS P +
Sbjct: 61 ENKVAENSFVVIMLSKAKSSSGEGSTTSAAPTPKVITLPTSVPSPAPAPAPAPA------ 114
Query: 118 TPSIPASNVTSNVTAANANSDTYGQAASNLVAGNDLEQTIQQIMDMGGGTWDKETVTRAL 177
P S S+ ++ S YGQAASNLVAGN+LE +QQI+DMGGG+WD++TV RAL
Sbjct: 115 --PAPRSGFCSSSSSGFFKSGVYGQAASNLVAGNNLEGAVQQILDMGGGSWDRDTVVRAL 172
Query: 178 QAAYNNPERAVDYLYSGIPETAEVAVPVAHFPASQAAETGAAGAAPV------SGVPNSS 231
+AAYNNPERAV+YLY+GIPE AE A PVA P S+ A P +G PN++
Sbjct: 173 RAAYNNPERAVEYLYTGIPEQAE-APPVAQVPVSEQAPAAQPRQQPAQPTTVPAGGPNAN 231
Query: 232 PLNMFPQETLS-GAPAGGLGSLDFLRNNQQVWSL 264
PL++FPQ + G+ A G+LDFLRN+QQ +L
Sbjct: 232 PLDLFPQGLPNIGSGAAEAGTLDFLRNSQQFQAL 265
>gi|115479081|ref|NP_001063134.1| Os09g0407200 [Oryza sativa Japonica Group]
gi|55976306|sp|Q40742.2|RAD23_ORYSJ RecName: Full=Probable DNA repair protein RAD23; AltName:
Full=OsRAD23
gi|51091502|dbj|BAD36240.1| putative RAD23 protein [Oryza sativa Japonica Group]
gi|51091558|dbj|BAD36295.1| putative RAD23 protein [Oryza sativa Japonica Group]
gi|113631367|dbj|BAF25048.1| Os09g0407200 [Oryza sativa Japonica Group]
gi|125563673|gb|EAZ09053.1| hypothetical protein OsI_31314 [Oryza sativa Indica Group]
gi|125605644|gb|EAZ44680.1| hypothetical protein OsJ_29306 [Oryza sativa Japonica Group]
Length = 392
Score = 228 bits (581), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 134/279 (48%), Positives = 178/279 (63%), Gaps = 14/279 (5%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
MK++VKTLKGS F+I V + V VK+ IE QG+ YP QQ+LIH GKVLKD+TTL
Sbjct: 1 MKISVKTLKGSTFQIEVDSAQKVADVKRIIETTQGQHIYPAEQQMLIHQGKVLKDDTTLD 60
Query: 61 DNKVSEDGFLVVMLSKSK-TLGSAGASSAQPAHTTPPT----TAPSSNS--TPPQEASVP 113
+NKV E+ FLV+ML + K + SA A+S P++ PPT AP+S + P V
Sbjct: 61 ENKVLENSFLVIMLRQGKGSSSSAPATSKAPSNQAPPTQTVPAAPASQAPVAPATTVPVT 120
Query: 114 PPAPTPSIPASNVTSNVTAANANSDTYGQAASNLVAGNDLEQTIQQIMDMGGGTWDKETV 173
APTP+ AS + A ++ +D YGQA SNLVAG++LE TIQ I++MGGG WD++ V
Sbjct: 121 VSAPTPTATASPAPA--VAVSSEADNYGQATSNLVAGSNLEATIQSILEMGGGIWDRDIV 178
Query: 174 TRALQAAYNNPERAVDYLYSGIPETAEVAVPVAHF----PASQAAETGAAGAAPVSGVPN 229
AL AA+NNPERAV+YLYSG+PE ++ VP P + T A + +S PN
Sbjct: 179 LHALSAAFNNPERAVEYLYSGVPEQMDIPVPPPSIQPANPTQASQATQPAAPSILSSGPN 238
Query: 230 SSPLNMFPQETLSGA-PAGGLGSLDFLRNNQQVWSLLCC 267
+SPL++FPQ + + A GLG+LD LRNN Q +LL
Sbjct: 239 ASPLDLFPQALPNASTDAAGLGNLDALRNNAQFRTLLSL 277
>gi|1488297|gb|AAB65841.1| osRAD23 [Oryza sativa Japonica Group]
Length = 392
Score = 228 bits (580), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 134/279 (48%), Positives = 178/279 (63%), Gaps = 14/279 (5%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
MK++VKTLKGS F+I V + V VK+ IE QG+ YP QQ+LIH GKVLKD+TTL
Sbjct: 1 MKISVKTLKGSTFQIEVDSAQKVADVKRIIETTQGQHIYPAEQQMLIHQGKVLKDDTTLD 60
Query: 61 DNKVSEDGFLVVMLSKSK-TLGSAGASSAQPAHTTPPT----TAPSSNS--TPPQEASVP 113
+NKV E+ FLV+ML + K + SA A+S P++ PPT AP+S + P V
Sbjct: 61 ENKVLENSFLVIMLRQGKGSSSSAPATSKAPSNQAPPTQTVPAAPASQAPVAPATTVPVT 120
Query: 114 PPAPTPSIPASNVTSNVTAANANSDTYGQAASNLVAGNDLEQTIQQIMDMGGGTWDKETV 173
APTP+ AS + A ++ +D YGQA SNLVAG++LE TIQ I++MGGG WD++ V
Sbjct: 121 VSAPTPTATASPAPA--VAVSSEADNYGQATSNLVAGSNLEATIQSILEMGGGIWDRDIV 178
Query: 174 TRALQAAYNNPERAVDYLYSGIPETAEVAVPVAHF----PASQAAETGAAGAAPVSGVPN 229
AL AA+NNPERAV+YLYSG+PE ++ VP P + T A + +S PN
Sbjct: 179 LHALSAAFNNPERAVEYLYSGVPEQMDIPVPPPSIQPANPTQASQATQPAAPSILSSGPN 238
Query: 230 SSPLNMFPQETLSGA-PAGGLGSLDFLRNNQQVWSLLCC 267
+SPL++FPQ + + A GLG+LD LRNN Q +LL
Sbjct: 239 ASPLDLFPQALPNASTDAAGLGNLDALRNNAQFRTLLSL 277
>gi|168020994|ref|XP_001763027.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162685839|gb|EDQ72232.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 370
Score = 226 bits (577), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 145/263 (55%), Positives = 184/263 (69%), Gaps = 14/263 (5%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
MK++VKTLKG+HF++ V P+DTV+ VK+ IED QGK+++PC QQLLIH GKVLKDETT+
Sbjct: 1 MKISVKTLKGNHFDLEVSPADTVLNVKRQIEDSQGKESFPCSQQLLIHQGKVLKDETTME 60
Query: 61 DNKVSEDGFLVVMLSKSKTLGSAGASSAQPAHTTPPTTAPSSNSTPPQEASVPPPAPTPS 120
+NKVSE+GF+VVML+K+KT AGAS PP+++ ++ + P A+ PP
Sbjct: 61 ENKVSENGFVVVMLTKAKT--GAGAS--------PPSSSGTTQAPAPVAAATPPAPARSP 110
Query: 121 IPASNVTSNVTAANANSDTYGQAASNLVAGNDLEQTIQQIMDMGGGTWDKETVTRALQAA 180
S T A S TYGQAASNLVAGN LE T+QQIMDMGGG+WD++TV RAL+AA
Sbjct: 111 ATPSPPTPATPAPAPAS-TYGQAASNLVAGNVLETTVQQIMDMGGGSWDRDTVVRALRAA 169
Query: 181 YNNPERAVDYLYSGIPETAEVAVPVAHFPA---SQAAETGAAGAAPVSGVPNSSPLNMFP 237
+NNPERAV+YLYSGIPE+AE+ PA AA A A +G PN++PL++FP
Sbjct: 170 FNNPERAVEYLYSGIPESAEMRPVGGRSPAVAGVPAATPAAPAQAAPAGGPNAAPLDLFP 229
Query: 238 QETLSGAPAGGLGSLDFLRNNQQ 260
Q A GG G+LDFLRNN Q
Sbjct: 230 QGMPGMAGGGGAGALDFLRNNPQ 252
>gi|414885365|tpg|DAA61379.1| TPA: hypothetical protein ZEAMMB73_350633 [Zea mays]
Length = 382
Score = 226 bits (576), Expect = 8e-57, Method: Compositional matrix adjust.
Identities = 135/270 (50%), Positives = 177/270 (65%), Gaps = 15/270 (5%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
MK++VKTLKGS F I V P+D V VKK IE +Q + +YP QQ+LIH GKVLKD+TTL
Sbjct: 1 MKVSVKTLKGSSFHIEVDPTDKVADVKKVIESIQEQASYPADQQVLIHQGKVLKDDTTLE 60
Query: 61 DNKVSEDGFLVVMLSKSKTLGSAGASSAQPAHTTPPTTAPSSNS---TPPQEASVPPPAP 117
+N+V E+ FLV+ML ++K G+SSA PA T APS+ + TPPQ ++ P
Sbjct: 61 ENQVVENNFLVIMLRQNK-----GSSSAAPAKVTA-NQAPSTQTVPATPPQTSAAPDAPA 114
Query: 118 TPSIPASNVTSNVTAANA--NSDTYGQAASNLVAGNDLEQTIQQIMDMGGGTWDKETVTR 175
+ A+ S A +D+YGQA SNLVAG++LE TI+ I++MGGGTWD++TV R
Sbjct: 115 PIAPAATATASAAPAVAVSTEADSYGQATSNLVAGSNLEGTIKSILEMGGGTWDRDTVLR 174
Query: 176 ALQAAYNNPERAVDYLYSGIPETAEVAVPVAHFPASQAAETGAAGAAPVSGVPNSSPLNM 235
AL+AAYNNPERAV+YLYSGIPE EV P P+SQ + A P PN++PL++
Sbjct: 175 ALRAAYNNPERAVEYLYSGIPEQMEVPAPP---PSSQPVDPVQA-VQPAQAGPNANPLDL 230
Query: 236 FPQETLSGAPAGGLGSLDFLRNNQQVWSLL 265
FPQ + + G+LD LRNN Q +LL
Sbjct: 231 FPQSLPNDSANANTGNLDVLRNNSQFQNLL 260
>gi|356567282|ref|XP_003551850.1| PREDICTED: putative DNA repair protein RAD23-4-like [Glycine max]
Length = 375
Score = 225 bits (574), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 130/280 (46%), Positives = 172/280 (61%), Gaps = 34/280 (12%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
MK+ VKTLKG+HF ++V P DTV VKKNIE QG D YP QQ+LIH GKVL D TTL
Sbjct: 1 MKINVKTLKGTHFVLQVNPQDTVAVVKKNIETAQGADVYPAAQQMLIHQGKVLNDATTLE 60
Query: 61 DNKVSEDGFLVVMLSKSKTLGSAGASSA------QP--------AHTTPPTTAPSSNSTP 106
+NKV E+ F+V+MLSK+K S+GASSA QP + + PP +A +
Sbjct: 61 ENKVVENNFVVIMLSKNKV--SSGASSAPSNLGTQPQSSLPPTSSTSQPPASAVGQGESN 118
Query: 107 PQEASVPPPAPTPSIPASNVTSNVTAANANSDTYGQAASNLVAGNDLEQTIQQIMDMGGG 166
+++ V P PT ++P+ Y AASNL+AG++LE TIQQI++MGGG
Sbjct: 119 SEQSPVITP-PTIAVPS---------------IYDHAASNLMAGSNLETTIQQILEMGGG 162
Query: 167 TWDKETVTRALQAAYNNPERAVDYLYSGIPETAEVAVPVAHFPASQAAETGAAGAAPV-- 224
WD++TVT AL AA+NNPERA++YLYSGIPE A+V V QA + P
Sbjct: 163 NWDRDTVTGALHAAFNNPERAIEYLYSGIPERADVPAAVRSLITGQAENSSIQSTQPAVP 222
Query: 225 SGVPNSSPLNMFPQETLSGAPAGGLGSLDFLRNNQQVWSL 264
+G PN++PLN+FPQ + + G LD LRN ++ +L
Sbjct: 223 TGGPNTNPLNLFPQGLPNMSAIDNRGDLDSLRNREEFQAL 262
>gi|357124588|ref|XP_003563980.1| PREDICTED: putative DNA repair protein RAD23-3-like [Brachypodium
distachyon]
Length = 413
Score = 222 bits (566), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 140/283 (49%), Positives = 170/283 (60%), Gaps = 48/283 (16%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
MKL VKTLKG++FEI P +V VK+ IE QG++ YP QQ+LIH GK+LKD+TTL
Sbjct: 1 MKLFVKTLKGTNFEIEASPEASVAEVKRIIEGAQGQNVYPADQQMLIHQGKILKDDTTLE 60
Query: 61 DNKVSEDGFLVVMLSKSK-------TLGSAGASSAQPA---------------HTTPPTT 98
N V+E+ FLV+MLSK+K T A AQPA TPP+T
Sbjct: 61 GNNVAENSFLVIMLSKAKASPSGPSTASKAPTIQAQPATPVAAATPSGPATPVARTPPST 120
Query: 99 APSSNS--TPPQEASVPPPAPTPSIPASNVTSNVTAANANSDTYGQAASNLVAGNDLEQT 156
AP S S PP S PPA + IPA+ VT A+ ++D Y QAASNLV+G LEQT
Sbjct: 121 APVSASELAPP---SAQPPAGS-DIPAAAVT-----ASGDADVYSQAASNLVSGGSLEQT 171
Query: 157 IQQIMDMGGGTWDKETVTRALQAAYNNPERAVDYLYSGIPETAEVAVPVAHFPASQAAET 216
+Q I+DMGGGTW+++ V RAL+AAYNNPERA+DYLYSGIPE E Q A
Sbjct: 172 VQHILDMGGGTWERDMVVRALRAAYNNPERAIDYLYSGIPENVEAPPVARAPAPVQQATN 231
Query: 217 GAA--GAAPV-----SGV----PNSSPLNMFPQETLSGAPAGG 248
A AAPV SGV PN++PLN+FPQ G P GG
Sbjct: 232 PQALSQAAPVPPVQPSGVASAGPNANPLNLFPQ----GVPTGG 270
>gi|168057528|ref|XP_001780766.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162667784|gb|EDQ54405.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 396
Score = 222 bits (566), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 144/285 (50%), Positives = 180/285 (63%), Gaps = 25/285 (8%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
MK++VKTLKG+HF++ V + V +VK+ IE++QGKD +PC QQLLIH GKVLKDETT+A
Sbjct: 1 MKISVKTLKGNHFDLHVAEDELVSSVKRKIEELQGKDAFPCAQQLLIHQGKVLKDETTMA 60
Query: 61 DNKVSEDGFLVVMLSKSKTLGSAGASSAQPAHTTPPTTAPSSNSTPPQEASVPPPAPTPS 120
DNKV+E+GFLVVML+K + S +S P + + P S P PA
Sbjct: 61 DNKVAENGFLVVMLTKVRLHESNTGTSRWRTRVVAPAAPAPAPAPAPASTSTPAPAAPAP 120
Query: 121 IPASNVTSN------VTAANANSDTYGQAASNLVAGNDLEQTIQQIMDMGGGTWDKETVT 174
PA+ + V D YGQAASNLVAG+ LE T+QQIMDMGGGTWD++TV
Sbjct: 121 APAAVAATPGAGAPAVALCRGTGDGYGQAASNLVAGSALESTVQQIMDMGGGTWDRDTVL 180
Query: 175 RALQAAYNNPERAVDYLYSGIPETAEVAVPVAHFPASQAAETGAAGAAPVSGV------- 227
RAL+AA+NNPERAV+YLYSGIPE AEV PVA P + A AA A P +
Sbjct: 181 RALRAAFNNPERAVEYLYSGIPEAAEVPAPVARGPPAGGAPVAAAPAGPGAAGAAAVAAN 240
Query: 228 ---PNSSPLNMFPQETLSGAP-----AGGLGSLDFLRNNQQVWSL 264
PN++PL++FPQ G P GLG+LDFLRNN Q +L
Sbjct: 241 PQGPNAAPLDLFPQ----GMPGAGGGGAGLGALDFLRNNPQFQAL 281
>gi|388499022|gb|AFK37577.1| unknown [Lotus japonicus]
Length = 376
Score = 221 bits (564), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 132/280 (47%), Positives = 174/280 (62%), Gaps = 28/280 (10%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
MK+ VKTLKG+HF+I+V D+V VKK IE QG YP QQ+LIH GKVLKD+TTL
Sbjct: 1 MKINVKTLKGTHFQIQVNLQDSVADVKKTIEVAQGAGVYPAAQQMLIHQGKVLKDDTTLE 60
Query: 61 DNKVSEDGFLVVMLSKSKTLGSAGASSAQPAHTTPPTTAPSSNSTPP------------Q 108
+N V+ED F+V+MLSK+K S +++A P+S+ P Q
Sbjct: 61 ENNVAEDSFVVIMLSKNKVSSSGASTAAAAPPNPVTAPQPASSVPPTSSTPEPPTSAVGQ 120
Query: 109 EASVPPPAPTPSIPASNVTSNVTAANANSDTYGQAASNLVAGNDLEQTIQQIMDMGGGTW 168
AS +P + P + V+S YGQAASNL+AG++++ T+QQI++MGGG+W
Sbjct: 121 GASNSEQSPVITPPTAAVSS----------VYGQAASNLIAGSNVDPTVQQILEMGGGSW 170
Query: 169 DKETVTRALQAAYNNPERAVDYLYSGIPETAEVAVPVAHFPASQAAETGAAG----AAPV 224
D++TV RAL+AAYNNPERAV+YLYSGIPE A+V VA P+ AE + A P
Sbjct: 171 DRDTVIRALRAAYNNPERAVEYLYSGIPEQADVPA-VARSPSVGQAENPSVRPPQPAVPT 229
Query: 225 SGVPNSSPLNMFPQETLSGAPAGGLGSLDFLRNNQQVWSL 264
G PN++PLN+FPQ + G LDFLRNNQQ +L
Sbjct: 230 GG-PNTNPLNLFPQGIPNMGAEDNAGDLDFLRNNQQFQAL 268
>gi|297805910|ref|XP_002870839.1| hypothetical protein ARALYDRAFT_494129 [Arabidopsis lyrata subsp.
lyrata]
gi|297316675|gb|EFH47098.1| hypothetical protein ARALYDRAFT_494129 [Arabidopsis lyrata subsp.
lyrata]
Length = 377
Score = 221 bits (564), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 135/272 (49%), Positives = 179/272 (65%), Gaps = 16/272 (5%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
MK+ VKTL G++FEI V+P+DTV VKK IE V+G + YP +Q+LIH GKVLKDETTL
Sbjct: 1 MKIFVKTLSGTNFEIEVKPADTVSDVKKAIETVKGAE-YPAVKQMLIHQGKVLKDETTLE 59
Query: 61 DNKVSEDGFLVVMLSKSKTLGSAGASSAQ--PAHTTPPTTAPSSNSTPPQEASVPPPAPT 118
+N V E+ F+V+MLSK+K S ++++ P+ T T A S P +V P PT
Sbjct: 60 ENNVVENSFIVIMLSKTKVSSSGASTASAPAPSATQAQTVATPQVSAP----TVSVPEPT 115
Query: 119 PSIPASNVTSNVTAANANSDTYGQAASNLVAGNDLEQTIQQIMDMGGGTWDKETVTRALQ 178
+ + AA +D YGQAASNLVAG LE T+QQI+DMGGG+WD++TV RAL+
Sbjct: 116 SG--TATAAAPAAAAAVQTDVYGQAASNLVAGTTLESTVQQILDMGGGSWDRDTVVRALR 173
Query: 179 AAYNNPERAVDYLYSGIPETAEVAVPVAHFPAS------QAAETGAAGAAPVSGVPNSSP 232
AA+NNPERAV+YLYSGIP AE+ PVA P++ A+ A +G PN++P
Sbjct: 174 AAFNNPERAVEYLYSGIPAQAEIP-PVAQAPSTGEQPANPQAQPQQAAPVAATGGPNANP 232
Query: 233 LNMFPQETLSGAPAGGLGSLDFLRNNQQVWSL 264
LN+FPQ + A G G+LDFLRN+Q+ +L
Sbjct: 233 LNLFPQGMPAADAAAGAGNLDFLRNSQKFQAL 264
>gi|226528090|ref|NP_001149553.1| LOC100283179 [Zea mays]
gi|194700938|gb|ACF84553.1| unknown [Zea mays]
gi|195627978|gb|ACG35819.1| DNA repair protein RAD23 [Zea mays]
gi|414589470|tpg|DAA40041.1| TPA: DNA repair protein RAD23 [Zea mays]
Length = 390
Score = 221 bits (562), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 136/274 (49%), Positives = 181/274 (66%), Gaps = 15/274 (5%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
MK++VKTLKGS F+I V+P+D V AVKK IE++Q + +YP QQ+LIH GKVL D+TTL
Sbjct: 1 MKVSVKTLKGSSFQIEVEPTDKVAAVKKVIENMQEQASYPADQQVLIHQGKVLSDDTTLE 60
Query: 61 DNKVSEDGFLVVMLSKSKTLGSAGASSAQPAHTT----PPT-TAP---SSNSTPPQEASV 112
+N+V+E+ FLV+ML ++K G+SSA PA TT PPT T P S P +
Sbjct: 61 ENQVTENNFLVIMLRQNK-----GSSSAAPAKTTANQAPPTQTVPVVPPQTSAAPAAPAP 115
Query: 113 PPPAPTPSIPASNVTSNVTAANANSDTYGQAASNLVAGNDLEQTIQQIMDMGGGTWDKET 172
P + A+ + A + +D+YGQAASNLVAG++LE TIQ I++MGGG WD++T
Sbjct: 116 IVPVSALAATATASAAPAVAVSTEADSYGQAASNLVAGSNLEGTIQSILEMGGGIWDRDT 175
Query: 173 VTRALQAAYNNPERAVDYLYSGIPETAEVAV-PVAHFPASQAAETGAAGAAPVSGVPNSS 231
V RAL+ AYNNPERAV+YLYSGIPE +V P + P + AA A SG PN++
Sbjct: 176 VLRALRVAYNNPERAVEYLYSGIPEQMDVPTSPPSIQPVNPVQAAQAAQTAAPSG-PNAN 234
Query: 232 PLNMFPQETLSGAPAGGLGSLDFLRNNQQVWSLL 265
PL++FPQ + + G G+LD LRNN Q +LL
Sbjct: 235 PLDLFPQSLPNASANAGTGNLDVLRNNVQFQNLL 268
>gi|413954952|gb|AFW87601.1| hypothetical protein ZEAMMB73_681598 [Zea mays]
Length = 399
Score = 220 bits (560), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 136/290 (46%), Positives = 171/290 (58%), Gaps = 26/290 (8%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
MKL VKTLKG++FEI P +V VK+ IE QG+ Y QQ+LI+ GK+LKDETTL
Sbjct: 1 MKLNVKTLKGTNFEIEASPDASVADVKRIIETTQGQSTYRADQQMLIYQGKILKDETTLE 60
Query: 61 DNKVSEDGFLVVMLSKSKTLGSAGASSAQPAHTTPPTTAPSSNSTPPQEASVPPPAPT-- 118
N V+E+ FLV+MLSK+K S +++ + + A P AP
Sbjct: 61 SNGVAENSFLVIMLSKAKASSSGASTATTAKAPATLAQPAAPVAPAASVARTPTQAPVAT 120
Query: 119 -----PSIPASNVTSNVTAANANSDTYGQAASNLVAGNDLEQTIQQIMDMGGGTWDKETV 173
PS+ + AA ++D Y QAASNLV+GN+LEQTIQQI+DMGGGTW+++TV
Sbjct: 121 AETAPPSVQPQAAPAATVAATDDADVYSQAASNLVSGNNLEQTIQQILDMGGGTWERDTV 180
Query: 174 TRALQAAYNNPERAVDYLYSGIPETAEVAVPVAHFPAS------QAAETGAAGAA----- 222
RAL+AAYNNPERA+DYLYSGIPE E A PVA PA+ QAA A
Sbjct: 181 VRALRAAYNNPERAIDYLYSGIPENVE-AQPVARAPAAGQQTNQQAASPAQPAVALPVQP 239
Query: 223 -PVSGVPNSSPLNMFPQETLSGA------PAGGLGSLDFLRNNQQVWSLL 265
P S PN++PLN+FPQ SG P G G+LD LR Q +LL
Sbjct: 240 SPASAGPNANPLNLFPQGVPSGGSNPGVVPGAGSGALDALRQLPQFQALL 289
>gi|226500270|ref|NP_001142065.1| uncharacterized protein LOC100274222 [Zea mays]
gi|194706976|gb|ACF87572.1| unknown [Zea mays]
gi|413954953|gb|AFW87602.1| DNA repair protein RAD23 [Zea mays]
Length = 405
Score = 220 bits (560), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 136/290 (46%), Positives = 171/290 (58%), Gaps = 26/290 (8%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
MKL VKTLKG++FEI P +V VK+ IE QG+ Y QQ+LI+ GK+LKDETTL
Sbjct: 1 MKLNVKTLKGTNFEIEASPDASVADVKRIIETTQGQSTYRADQQMLIYQGKILKDETTLE 60
Query: 61 DNKVSEDGFLVVMLSKSKTLGSAGASSAQPAHTTPPTTAPSSNSTPPQEASVPPPAPT-- 118
N V+E+ FLV+MLSK+K S +++ + + A P AP
Sbjct: 61 SNGVAENSFLVIMLSKAKASSSGASTATTAKAPATLAQPAAPVAPAASVARTPTQAPVAT 120
Query: 119 -----PSIPASNVTSNVTAANANSDTYGQAASNLVAGNDLEQTIQQIMDMGGGTWDKETV 173
PS+ + AA ++D Y QAASNLV+GN+LEQTIQQI+DMGGGTW+++TV
Sbjct: 121 AETAPPSVQPQAAPAATVAATDDADVYSQAASNLVSGNNLEQTIQQILDMGGGTWERDTV 180
Query: 174 TRALQAAYNNPERAVDYLYSGIPETAEVAVPVAHFPAS------QAAETGAAGAA----- 222
RAL+AAYNNPERA+DYLYSGIPE E A PVA PA+ QAA A
Sbjct: 181 VRALRAAYNNPERAIDYLYSGIPENVE-AQPVARAPAAGQQTNQQAASPAQPAVALPVQP 239
Query: 223 -PVSGVPNSSPLNMFPQETLSGA------PAGGLGSLDFLRNNQQVWSLL 265
P S PN++PLN+FPQ SG P G G+LD LR Q +LL
Sbjct: 240 SPASAGPNANPLNLFPQGVPSGGSNPGVVPGAGSGALDALRQLPQFQALL 289
>gi|223945395|gb|ACN26781.1| unknown [Zea mays]
Length = 294
Score = 219 bits (559), Expect = 8e-55, Method: Compositional matrix adjust.
Identities = 137/295 (46%), Positives = 174/295 (58%), Gaps = 29/295 (9%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
MKL VKTLKG++FEI P +V VK+ IE QG+ Y QQ+LI+ GK+LKDETTL
Sbjct: 1 MKLNVKTLKGTNFEIEASPDASVADVKRIIETTQGQSTYRADQQMLIYQGKILKDETTLE 60
Query: 61 DNKVSEDGFLVVMLSKSKTLGSAGASSAQPAHTTPPTTAPSSNSTPPQEASVPPPAPT-- 118
N V+E+ FLV+MLSK+K S +++ + + A P AP
Sbjct: 61 SNGVAENSFLVIMLSKAKASSSGASTATTAKAPATLAQPAAPVAPAASVARTPTQAPVAT 120
Query: 119 -----PSIPASNVTSNVTAANANSDTYGQAASNLVAGNDLEQTIQQIMDMGGGTWDKETV 173
PS+ + AA ++D Y QAASNLV+GN+LEQTIQQI+DMGGGTW+++TV
Sbjct: 121 AETAPPSVQPQAAPAATVAATDDADVYSQAASNLVSGNNLEQTIQQILDMGGGTWERDTV 180
Query: 174 TRALQAAYNNPERAVDYLYSGIPETAEVAVPVAHFPAS------QAAETGAAGAA----- 222
RAL+AAYNNPERA+DYLYSGIPE E A PVA PA+ QAA A
Sbjct: 181 VRALRAAYNNPERAIDYLYSGIPENVE-AQPVARAPAAGQQTNQQAASPAQPAVALPVQP 239
Query: 223 -PVSGVPNSSPLNMFPQETLSGA------PAGGLGSLDFLRNNQQVWSLLCCQLL 270
P S PN++PLN+FPQ SG P G G+LD LR Q+ ++ QLL
Sbjct: 240 SPASAGPNANPLNLFPQGVPSGGSNPGVVPGAGSGALDALR---QLPQVVIEQLL 291
>gi|255576447|ref|XP_002529115.1| uv excision repair protein rad23, putative [Ricinus communis]
gi|223531394|gb|EEF33228.1| uv excision repair protein rad23, putative [Ricinus communis]
Length = 409
Score = 219 bits (558), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 143/307 (46%), Positives = 179/307 (58%), Gaps = 54/307 (17%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
MK+ VKTLKG+ F++ V+P DT+ VKK+IE QG D YP GQQ+LI+ GKVLKD TT+
Sbjct: 1 MKIFVKTLKGTTFDVEVKPEDTIADVKKSIETTQGADVYPAGQQMLIYQGKVLKDNTTID 60
Query: 61 DNKVSEDGFLVVMLSKSKTLGSAGASSAQPAHTT--PPTTAPSSNSTPPQEASVPPPAPT 118
+NKV+E+ F+V+ML+K+K+ G S+A A TT P T P A++ PPAP
Sbjct: 61 ENKVAENSFVVIMLTKNKSSTGEG-STASTASTTKAPQTIIP---------ATIAPPAPV 110
Query: 119 PSIPASNVTSNVTAANA-----------------------------NSDTYGQAASNLVA 149
P+ T A A D YGQAASNLVA
Sbjct: 111 PTSALPAPAPAPTPAAAPAPAAAPAPAPTPAAAPAPAPAPSAIAAQQGDVYGQAASNLVA 170
Query: 150 GNDLEQTIQQIMDMGGGTWDKETVTRALQAAYNNPERAVDYLYSGIPETAEVAVPVAHFP 209
GN+LE IQQI+DMGGGTWD++TV RAL+AAYNNPERAV+YLYSGIPE AEV PVA
Sbjct: 171 GNNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEVP-PVAPVS 229
Query: 210 ASQAAETGAAGAAPV-------SGVPNSSPLNMFPQ-----ETLSGAPAGGLGSLDFLRN 257
S A A SG PN++PL++FPQ + G G+LDFLRN
Sbjct: 230 LSGQAANQPAQPQQPAQPAAVPSGGPNANPLDLFPQGLPNMGSGGAGAGAGAGTLDFLRN 289
Query: 258 NQQVWSL 264
+QQ +L
Sbjct: 290 SQQFQAL 296
>gi|30409726|dbj|BAC76393.1| RAD23-like protein [Arabidopsis thaliana]
Length = 337
Score = 217 bits (553), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 133/272 (48%), Positives = 164/272 (60%), Gaps = 60/272 (22%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
MK+ VKTLKG+HFEI V+P D+V+ VKKNIE VQG D YP +Q+LIH GKVLKDETT
Sbjct: 1 MKIFVKTLKGTHFEIEVKPEDSVVDVKKNIESVQGADVYPAAKQMLIHQGKVLKDETT-- 58
Query: 61 DNKVSEDGFLVVMLSKSKTLGSAGASSAQPAHTTPPTTAPSSNSTPPQEASVPPPAPTPS 120
+T+ TTP +P P P +
Sbjct: 59 -----------------ETV------------TTP----------------IPEPVPA-T 72
Query: 121 IPASNVTSNVTAANANSDTYGQAASNLVAGNDLEQTIQQIMDMGGGTWDKETVTRALQAA 180
I +S + + D YGQAASNL AG++LE TIQQI+DMGGGTWD+ETV AL+AA
Sbjct: 73 ISSSTPAPDSAPVGSQGDVYGQAASNLAAGSNLESTIQQILDMGGGTWDRETVVLALRAA 132
Query: 181 YNNPERAVDYLYSGIPETAEVAVPVAHFPASQA------AETGAAGAAPVSGVPNSSPLN 234
+NNPERAV+YLY+GIPE AEV PVA PAS A+T AAP SG PN++PL+
Sbjct: 133 FNNPERAVEYLYTGIPEQAEVP-PVARPPASAGQPANPPAQTQQPAAAPASG-PNANPLD 190
Query: 235 MFPQ--ETLSGAPAGGLGSLDFLRNNQQVWSL 264
+FPQ + G P G G+LDFLRN+QQ +L
Sbjct: 191 LFPQGLPNVGGNP--GAGTLDFLRNSQQFQAL 220
>gi|1914683|emb|CAA72741.1| RAD23, isoform I [Daucus carota]
Length = 382
Score = 215 bits (547), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 135/283 (47%), Positives = 175/283 (61%), Gaps = 27/283 (9%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
MK+ VKTLKGS FEI+V P D+V VK++IE QG YP QQ+LI+ GKVLKD TTL
Sbjct: 1 MKIYVKTLKGSQFEIQVNPDDSVADVKRSIETAQGAAVYPAAQQMLIYQGKVLKDGTTLL 60
Query: 61 DNKVSEDGFLVVMLSKSKTLGSAGASSAQPAHTTPPTTAPSSNSTPPQEASVPPPA---- 116
+N V+E+ F+V+MLSKSK+ G++++ A P T S PP SVP PA
Sbjct: 61 ENNVAENSFIVIMLSKSKSPSGEGSTTSTAAAPKAPQT-----SAPP---SVPAPAVSQP 112
Query: 117 PTPSIPASNVTSNVTA---------ANANSDTYGQAASNLVAGNDLEQTIQQIMDMGGGT 167
P ++P + + ++ Y AAS LVAG++LE IQQI+DMGGGT
Sbjct: 113 PASTLPVPAPSPAPAPATAPIPSAAVGSEANVYDSAASLLVAGSNLEGAIQQILDMGGGT 172
Query: 168 WDKETVTRALQAAYNNPERAVDYLYSGIPETAEVAVPVAHFPASQAAE-----TGAAGAA 222
WD++TV R ++AA+NNPERAV+YLYSGIPE AE P+ QAA AA A
Sbjct: 173 WDRDTVIRIVRAAFNNPERAVEYLYSGIPEQAEAPPVAPSPPSGQAANPLDQPPAAAQPA 232
Query: 223 PVSGVPNSSPLNMFPQETLS-GAPAGGLGSLDFLRNNQQVWSL 264
P S PN++PL++FPQ G+ A G G+LDFLR NQQ +L
Sbjct: 233 PASAGPNANPLDLFPQGLPDMGSNAAGAGNLDFLRTNQQFQAL 275
>gi|195636354|gb|ACG37645.1| DNA repair protein RAD23 [Zea mays]
Length = 405
Score = 214 bits (545), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 134/290 (46%), Positives = 167/290 (57%), Gaps = 26/290 (8%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
MKL VKTLKG++FEI P +V VK+ IE QG+ Y QQ+LI+ GK+LKDETTL
Sbjct: 1 MKLNVKTLKGTNFEIEASPDASVADVKRIIETTQGQSTYRADQQMLIYQGKILKDETTLE 60
Query: 61 DNKVSEDGFLVVMLSKSKTLGSAGASSAQPAHTTPPTTAPSSNSTPPQEASVPPPAPTPS 120
N V+E+ FLV+MLSK+K S +++ + A P AP +
Sbjct: 61 SNGVAENSFLVIMLSKAKASSSGASTTTAAKAPATLAQPAAPVPPAASVARTPTQAPVAT 120
Query: 121 -------IPASNVTSNVTAANANSDTYGQAASNLVAGNDLEQTIQQIMDMGGGTWDKETV 173
+ AA ++D Y QAASNLV+GN LEQTIQQI+DMGGGTW+++TV
Sbjct: 121 AETAPPSAQPQAAPAATVAATDDADVYSQAASNLVSGNSLEQTIQQILDMGGGTWERDTV 180
Query: 174 TRALQAAYNNPERAVDYLYSGIPETAEVAVPVAHFPAS------QAAETGAAGAA----- 222
RAL+AAYNNPERA+DYLYSGIPE E A PVA PA+ QAA A
Sbjct: 181 VRALRAAYNNPERAIDYLYSGIPENVE-AQPVARAPAAGQQTNQQAASPAQPAVALPVQP 239
Query: 223 -PVSGVPNSSPLNMFPQETLSGA------PAGGLGSLDFLRNNQQVWSLL 265
P S PN++PLN+FPQ SG P G G+LD LR Q +LL
Sbjct: 240 SPASAGPNANPLNLFPQGVPSGGSNPGVIPGAGSGALDALRQLPQFQALL 289
>gi|194698296|gb|ACF83232.1| unknown [Zea mays]
gi|413926353|gb|AFW66285.1| hypothetical protein ZEAMMB73_839350 [Zea mays]
Length = 185
Score = 213 bits (541), Expect = 9e-53, Method: Compositional matrix adjust.
Identities = 120/194 (61%), Positives = 147/194 (75%), Gaps = 10/194 (5%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
MKLTVKTLKG+HFEIRVQP+DT+MAVKKNIE++QGKD+YP GQQLLI NGKVLKDE+TL
Sbjct: 1 MKLTVKTLKGTHFEIRVQPNDTIMAVKKNIEEIQGKDSYPWGQQLLIFNGKVLKDESTLE 60
Query: 61 DNKVSEDGFLVVMLSKSKTLGSAGASSAQPAHTTPPTTAPSSNSTPPQEASVPPPAPTPS 120
+NKV+EDGFLVVMLSK KT GS G SS+Q H+ P T + PQ+A PP AP
Sbjct: 61 ENKVNEDGFLVVMLSKGKTSGSTGTSSSQ--HSNTPATRQAPPLEAPQQAPQPPVAPI-- 116
Query: 121 IPASNVTSNVTAANANS-DTYGQAASNLVAGNDLEQTIQQIMDMGGGTWDKETVTRALQA 179
TS A + +T+ AASNL++G +++ I Q+M+MGGG+WDK+ V RAL+A
Sbjct: 117 -----TTSQPEGLPAQAPNTHDNAASNLLSGRNVDTIINQLMEMGGGSWDKDKVQRALRA 171
Query: 180 AYNNPERAVDYLYS 193
AYNNPERAV+YLYS
Sbjct: 172 AYNNPERAVEYLYS 185
>gi|195622128|gb|ACG32894.1| DNA repair protein RAD23 [Zea mays]
Length = 402
Score = 212 bits (539), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 131/286 (45%), Positives = 164/286 (57%), Gaps = 21/286 (7%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
MKL VKTLKG++FEI P +V VK+ IE QG+ YP QQ+LI+ GK+LKDETTL
Sbjct: 1 MKLNVKTLKGTNFEIEASPDASVAEVKRIIETTQGQSTYPADQQMLIYQGKILKDETTLE 60
Query: 61 DNKVSEDGFLVVMLSKSKTLGSAGASSAQPAHTTPPTTAP----SSNSTPPQEASVPPPA 116
N V+E+ FLV+MLSK+K S +++ P S TP Q
Sbjct: 61 SNGVAENSFLVIMLSKAKASSSGASTATAAKAPATPAQPAAPATSVVRTPTQAPVATAET 120
Query: 117 PTPSIPASNVTSNVTAANANSDTYGQAASNLVAGNDLEQTIQQIMDMGGGTWDKETVTRA 176
PS + AA+ ++D Y QAASNLV+GN+LEQTIQQI+DMGGGTW++ TV RA
Sbjct: 121 APPSAQTQAAPAATAAASDDADVYSQAASNLVSGNNLEQTIQQILDMGGGTWERGTVVRA 180
Query: 177 LQAAYNNPERAVDYLYSGIPETAEVAVPVAHFPASQ-----------AAETGAAGAAPVS 225
L+AAYNNPERA+DYLYSGIPE E A Q A ++ S
Sbjct: 181 LRAAYNNPERAIDYLYSGIPENVEAPPVAGAPAAGQQTNQQAPSPAQPAAAPPVQSSAAS 240
Query: 226 GVPNSSPLNMFPQETLSGA------PAGGLGSLDFLRNNQQVWSLL 265
PN++PLN+FPQ SG PA G G+LD LR Q +LL
Sbjct: 241 ARPNANPLNLFPQGVPSGGANPGVVPAAGSGALDALRQLPQFQALL 286
>gi|226496401|ref|NP_001149140.1| LOC100282762 [Zea mays]
gi|195625028|gb|ACG34344.1| DNA repair protein RAD23 [Zea mays]
Length = 402
Score = 211 bits (538), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 131/286 (45%), Positives = 164/286 (57%), Gaps = 21/286 (7%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
MKL VKTLKG++FEI P +V VK+ IE QG+ YP QQ+LI+ GK+LKDETTL
Sbjct: 1 MKLNVKTLKGTNFEIEASPDASVAEVKRIIETTQGQSTYPADQQMLIYQGKILKDETTLE 60
Query: 61 DNKVSEDGFLVVMLSKSKTLGSAGASSAQPAHTTPPTTAP----SSNSTPPQEASVPPPA 116
N V+E+ FLV+MLSK+K S +++ P S TP Q
Sbjct: 61 SNGVAENSFLVIMLSKAKASSSGASTATAAKAPATPAQPAAPATSVVRTPTQAPVATAET 120
Query: 117 PTPSIPASNVTSNVTAANANSDTYGQAASNLVAGNDLEQTIQQIMDMGGGTWDKETVTRA 176
PS + AA+ ++D Y QAASNLV+GN+LEQTIQQI+DMGGGTW++ TV RA
Sbjct: 121 APPSAQTQAAPAATAAASDDADVYSQAASNLVSGNNLEQTIQQILDMGGGTWERGTVVRA 180
Query: 177 LQAAYNNPERAVDYLYSGIPETAEVAVPVAHFPASQ-----------AAETGAAGAAPVS 225
L+AAYNNPERA+DYLYSGIPE E A Q A ++ S
Sbjct: 181 LRAAYNNPERAIDYLYSGIPENVEAPPVARAPAAGQQTNQQAPSPAQPAAAPPVQSSAAS 240
Query: 226 GVPNSSPLNMFPQETLSGA------PAGGLGSLDFLRNNQQVWSLL 265
PN++PLN+FPQ SG PA G G+LD LR Q +LL
Sbjct: 241 ARPNANPLNLFPQGVPSGGANPGVVPAAGSGALDALRQLPQFQALL 286
>gi|115467470|ref|NP_001057334.1| Os06g0264300 [Oryza sativa Japonica Group]
gi|53793157|dbj|BAD54365.1| putative RAD23 protein [Oryza sativa Japonica Group]
gi|53793163|dbj|BAD54370.1| putative RAD23 protein [Oryza sativa Japonica Group]
gi|113595374|dbj|BAF19248.1| Os06g0264300 [Oryza sativa Japonica Group]
gi|125596775|gb|EAZ36555.1| hypothetical protein OsJ_20893 [Oryza sativa Japonica Group]
gi|215692584|dbj|BAG88004.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 413
Score = 211 bits (537), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 136/310 (43%), Positives = 181/310 (58%), Gaps = 54/310 (17%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
MKL VKTLKG++FEI P +V VK+ IE QG++ YP QQ+LIH GK+LKD+TTL
Sbjct: 1 MKLFVKTLKGTNFEIEASPEASVAEVKRIIESTQGQNVYPADQQMLIHQGKILKDDTTLE 60
Query: 61 DNKVSEDGFLVVMLSKSKTLGSAGASSAQP--AHTTPPTTAPSSNSTPPQEASVPPPAPT 118
NKV+E+ FLV+MLSK+K S +++++ + + P T S TPP +A V P P
Sbjct: 61 GNKVAENSFLVIMLSKAKASSSGASTASKAPVSQSQPATPVASVARTPPPQAPVVTPEPA 120
Query: 119 P----------SIPASNVTSNVTAANANSDTYGQAASNLVAGNDLEQTIQQIMDMGGGTW 168
P + A+ + A++++D Y QAASNLV+G++LEQTIQQI+DMGGGTW
Sbjct: 121 PPSAQPPVASATPAAAATPAAAVTASSDADVYSQAASNLVSGSNLEQTIQQILDMGGGTW 180
Query: 169 DKETVTRALQAAYNNPERAVDYLYSGIPETAEVAVPVAHFPAS----------------- 211
+++ V RAL+AAYNNPERA+DYLYSGIPE E PVA PA+
Sbjct: 181 ERDMVVRALRAAYNNPERAIDYLYSGIPENVEPPQPVARAPAAVQQGNPQVPSQAQAAPP 240
Query: 212 --QAAETGAAGAAPVSGVPNSSPLNMFPQETLSGAPAGG------------LGSLDFLRN 257
GA+G PN++PLN+FPQ G P+ G G+LD LR
Sbjct: 241 PPVQPAGGASG-------PNANPLNLFPQ----GIPSAGSNPGAAAGAGAGAGALDALRQ 289
Query: 258 NQQVWSLLCC 267
Q +LL
Sbjct: 290 LPQFQALLAL 299
>gi|125554823|gb|EAZ00429.1| hypothetical protein OsI_22453 [Oryza sativa Indica Group]
Length = 413
Score = 211 bits (536), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 136/310 (43%), Positives = 181/310 (58%), Gaps = 54/310 (17%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
MKL VKTLKG++FEI P +V VK+ IE QG++ YP QQ+LIH GK+LKD+TTL
Sbjct: 1 MKLFVKTLKGTNFEIEASPEASVAEVKRIIESTQGQNVYPADQQMLIHQGKILKDDTTLE 60
Query: 61 DNKVSEDGFLVVMLSKSKTLGSAGASSAQP--AHTTPPTTAPSSNSTPPQEASVPPPAPT 118
NKV+E+ FLV+MLSK+K S +++++ + + P T S TPP +A V P P
Sbjct: 61 GNKVAENSFLVIMLSKAKASSSGASTASKAPVSQSQPATPVASVARTPPPQAPVVTPEPA 120
Query: 119 P----------SIPASNVTSNVTAANANSDTYGQAASNLVAGNDLEQTIQQIMDMGGGTW 168
P + A+ + A++++D Y QAASNLV+G++LEQTIQQI+DMGGGTW
Sbjct: 121 PPSAQPPVASATPAAAATPAAAVTASSDADVYSQAASNLVSGSNLEQTIQQILDMGGGTW 180
Query: 169 DKETVTRALQAAYNNPERAVDYLYSGIPETAEVAVPVAHFPAS----------------- 211
+++ V RAL+AAYNNPERA+DYLYSGIPE E PVA PA+
Sbjct: 181 ERDMVVRALRAAYNNPERAIDYLYSGIPENVEPPQPVARAPAAVQQGNPQVPSQAQAAPP 240
Query: 212 --QAAETGAAGAAPVSGVPNSSPLNMFPQETLSGAPAGG------------LGSLDFLRN 257
GA+G PN++PLN+FPQ G P+ G G+LD LR
Sbjct: 241 PPVQPAGGASG-------PNANPLNLFPQ----GIPSAGSNPGAAAGAGAGAGALDALRQ 289
Query: 258 NQQVWSLLCC 267
Q +LL
Sbjct: 290 LPQFQALLAL 299
>gi|326528949|dbj|BAJ97496.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 420
Score = 209 bits (533), Expect = 8e-52, Method: Compositional matrix adjust.
Identities = 125/267 (46%), Positives = 160/267 (59%), Gaps = 30/267 (11%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
MKL VKTLKG+ FEI P +V VK+ IE QG++ YP Q ++I+ GK+LKD+TTL
Sbjct: 1 MKLNVKTLKGTSFEIEATPESSVGEVKRIIESAQGQNVYPADQLMIIYQGKILKDDTTLD 60
Query: 61 DNKVSEDGFLVVMLSKSKTLGSAG-------ASSAQPA----HTTPPTTAPSSNSTPPQE 109
NKV+E+ FLV+MLSK K S S +QPA TPP S+ +PP +
Sbjct: 61 ANKVAENSFLVIMLSKPKASSSGASSASKAPVSQSQPATPVAAATPPVPVASAARSPPSQ 120
Query: 110 ASVP-----PPAPTPSIPASNVTSNVTAANANSDTYGQAASNLVAGNDLEQTIQQIMDMG 164
A V PP+ PS + + VTA + ++D Y QAASNLV+G LEQT+QQI+DMG
Sbjct: 121 APVAASEPAPPSAQPSAVSDTPAAAVTA-SGDADVYSQAASNLVSGGILEQTVQQILDMG 179
Query: 165 GGTWDKETVTRALQAAYNNPERAVDYLYSGIPETAEVAVPVAHFPA----------SQAA 214
GGTW+++ V RAL+AAYNNPERA+DYLYSGIPE+ E SQA
Sbjct: 180 GGTWERDMVVRALRAAYNNPERAIDYLYSGIPESVEAPPVARAPAPAQQAQNLQAPSQAQ 239
Query: 215 ETGAAGAAPVSGV---PNSSPLNMFPQ 238
P GV PN++PLN+FPQ
Sbjct: 240 AAPLPAVQPSGGVSAGPNANPLNLFPQ 266
>gi|326501072|dbj|BAJ98767.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 414
Score = 209 bits (532), Expect = 9e-52, Method: Compositional matrix adjust.
Identities = 125/267 (46%), Positives = 160/267 (59%), Gaps = 30/267 (11%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
MKL VKTLKG+ FEI P +V VK+ IE QG++ YP Q ++I+ GK+LKD+TTL
Sbjct: 1 MKLNVKTLKGTSFEIEATPESSVGEVKRIIESAQGQNVYPADQLMIIYQGKILKDDTTLD 60
Query: 61 DNKVSEDGFLVVMLSKSKTLGSAG-------ASSAQPA----HTTPPTTAPSSNSTPPQE 109
NKV+E+ FLV+MLSK K S S +QPA TPP S+ +PP +
Sbjct: 61 ANKVAENSFLVIMLSKPKASSSGASSASKAPVSQSQPATPVAAATPPVPVASAARSPPSQ 120
Query: 110 ASVP-----PPAPTPSIPASNVTSNVTAANANSDTYGQAASNLVAGNDLEQTIQQIMDMG 164
A V PP+ PS + + VTA+ ++D Y QAASNLV+G LEQT+QQI+DMG
Sbjct: 121 APVAASEPAPPSAQPSAVSDTPAAAVTAS-GDADVYSQAASNLVSGGILEQTVQQILDMG 179
Query: 165 GGTWDKETVTRALQAAYNNPERAVDYLYSGIPETAEVAVPVAHFPA----------SQAA 214
GGTW+++ V RAL+AAYNNPERA+DYLYSGIPE+ E SQA
Sbjct: 180 GGTWERDMVVRALRAAYNNPERAIDYLYSGIPESVEAPPVARAPAPAQQAQNLQAPSQAQ 239
Query: 215 ETGAAGAAPVSGV---PNSSPLNMFPQ 238
P GV PN++PLN+FPQ
Sbjct: 240 AAPLPAVQPSGGVSAGPNANPLNLFPQ 266
>gi|224101717|ref|XP_002312393.1| predicted protein [Populus trichocarpa]
gi|222852213|gb|EEE89760.1| predicted protein [Populus trichocarpa]
Length = 333
Score = 208 bits (530), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 125/271 (46%), Positives = 160/271 (59%), Gaps = 56/271 (20%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTLKGS F+I V+P DTV VKK IE QG YP QQ+LIH KVLKD TTL
Sbjct: 1 MRIFVKTLKGSTFDIEVKPEDTVADVKKKIETAQGVAVYPAEQQMLIHQAKVLKDNTTLD 60
Query: 61 DNKVSEDGFLVVMLSKSKTLGSAGASSAQPAHTTPPTTAPSSNSTPPQEASVPPPAPTPS 120
+NK+ E+ F V++ SK ++ S + +
Sbjct: 61 ENKIVENSF--VVIMLSKVRFASLVLSFESYYV--------------------------- 91
Query: 121 IPASNVTSNVTAANANSDTYGQAASNLVAGNDLEQTIQQIMDMGGGTWDKETVTRALQAA 180
YGQAAS+LVAG++LE +QQI+DMGGGTWD++TV RAL+AA
Sbjct: 92 -------------------YGQAASSLVAGSNLEVAVQQILDMGGGTWDRDTVVRALRAA 132
Query: 181 YNNPERAVDYLYSGIPETAEVAVPVAHF------PASQAAETGAAGAAPVSGVPNSSPLN 234
YNNPERA++YLYSGIPE AE A PVAH PA+Q + AA SG PN++PL+
Sbjct: 133 YNNPERAIEYLYSGIPEQAE-APPVAHMPLGGQAPAAQPQQHPTQTAAVPSGGPNANPLD 191
Query: 235 MFPQETLS-GAPAGGLGSLDFLRNNQQVWSL 264
+FPQ + G+ AGG G+LDFLRN+QQ +L
Sbjct: 192 LFPQGLPNVGSGAGGAGTLDFLRNSQQFQAL 222
>gi|125561624|gb|EAZ07072.1| hypothetical protein OsI_29318 [Oryza sativa Indica Group]
Length = 406
Score = 201 bits (512), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 130/296 (43%), Positives = 174/296 (58%), Gaps = 36/296 (12%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
MK+++KTLKGS FEI V+P+ V VKK IE QG + YP QQ+LIH G VLK++TTL
Sbjct: 1 MKVSIKTLKGSSFEIDVEPTSKVSDVKKLIEVTQGDNVYPADQQMLIHQGNVLKNDTTLE 60
Query: 61 DNKVSEDGFLVVMLSKSKTLGSAGASSAQPAHTTPPTTAPSSNST-----------PPQE 109
+NKV E+ F+V+MLSK + +A +++ +P T PS + PP
Sbjct: 61 ENKVVENNFIVIMLSKKGSSSAASSTAKEP------TKQPSVDRAIPTAPATQPPAPPAP 114
Query: 110 ASVPPPAPTPSIPASNVTSNVTAANANS-DTYGQAASNLVAGNDLEQTIQQIMDMGGGTW 168
S P AP P+ ++ + A + D YGQAASNLVAG++LE T+Q I++MGGG W
Sbjct: 115 VSEPVTAPVPTATTASAPAAAVTAASTEADNYGQAASNLVAGSNLEGTVQSILEMGGGAW 174
Query: 169 DKETVTRALQAAYNNPERAVDYLYSGIPETAEVAVPVAHFPASQAAETGAAGAA------ 222
D++TV RAL+AAYNNPERAV+YLY+G+PE AE V P A + AA
Sbjct: 175 DRDTVMRALRAAYNNPERAVEYLYTGVPEQAEAPAAVQALPVPAAVQALPVPAAVQPVDP 234
Query: 223 -----------PVSGVPNSSPLNMFPQETLSGAPAGGLGSLDFLRNNQQVWSLLCC 267
P SG PN++PL++FPQ + + G G+LD LRNN Q LL
Sbjct: 235 SQAPQSAQLSIPSSG-PNANPLDLFPQVLPNASANAGGGNLDVLRNNSQFRGLLSL 289
>gi|115476516|ref|NP_001061854.1| Os08g0430200 [Oryza sativa Japonica Group]
gi|38175472|dbj|BAD01169.1| putative osRAD23 [Oryza sativa Japonica Group]
gi|113623823|dbj|BAF23768.1| Os08g0430200 [Oryza sativa Japonica Group]
gi|125603492|gb|EAZ42817.1| hypothetical protein OsJ_27402 [Oryza sativa Japonica Group]
gi|215694056|dbj|BAG89255.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 406
Score = 201 bits (511), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 130/296 (43%), Positives = 174/296 (58%), Gaps = 36/296 (12%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
MK+++KTLKGS FEI V+P+ V VKK IE QG + YP QQ+LIH G VLK++TTL
Sbjct: 1 MKVSIKTLKGSSFEIDVEPTSKVSDVKKLIEVTQGDNVYPADQQMLIHQGNVLKNDTTLE 60
Query: 61 DNKVSEDGFLVVMLSKSKTLGSAGASSAQPAHTTPPTTAPSSNST-----------PPQE 109
+NKV E+ F+V+MLSK + +A +++ +P T PS + PP
Sbjct: 61 ENKVVENNFIVIMLSKKGSSSAASSTAKEP------TKQPSVDRAIPTAPATQPPAPPAP 114
Query: 110 ASVPPPAPTPSIPASNVTSNVTAANANS-DTYGQAASNLVAGNDLEQTIQQIMDMGGGTW 168
S P AP P+ ++ + A + D YGQAASNLVAG++LE T+Q I++MGGG W
Sbjct: 115 VSEPVTAPVPTATTASAPAAAVTAASTEADNYGQAASNLVAGSNLEGTVQSILEMGGGAW 174
Query: 169 DKETVTRALQAAYNNPERAVDYLYSGIPETAEVAVPVAHFPASQAAETGAAGAA------ 222
D++TV RAL+AAYNNPERAV+YLY+G+PE AE V P A + AA
Sbjct: 175 DRDTVMRALRAAYNNPERAVEYLYTGVPEQAEAPAAVQALPVPAAVQALPVPAAVQPVDP 234
Query: 223 -----------PVSGVPNSSPLNMFPQETLSGAPAGGLGSLDFLRNNQQVWSLLCC 267
P SG PN++PL++FPQ + + G G+LD LRNN Q LL
Sbjct: 235 SQAPQSAQLSIPSSG-PNANPLDLFPQVLPNASANAGGGNLDVLRNNSQFRGLLSL 289
>gi|212274727|ref|NP_001130219.1| uncharacterized protein LOC100191313 [Zea mays]
gi|194688580|gb|ACF78374.1| unknown [Zea mays]
gi|414885363|tpg|DAA61377.1| TPA: hypothetical protein ZEAMMB73_350633 [Zea mays]
gi|414885364|tpg|DAA61378.1| TPA: hypothetical protein ZEAMMB73_350633 [Zea mays]
Length = 225
Score = 197 bits (502), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 110/202 (54%), Positives = 142/202 (70%), Gaps = 15/202 (7%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
MK++VKTLKGS F I V P+D V VKK IE +Q + +YP QQ+LIH GKVLKD+TTL
Sbjct: 1 MKVSVKTLKGSSFHIEVDPTDKVADVKKVIESIQEQASYPADQQVLIHQGKVLKDDTTLE 60
Query: 61 DNKVSEDGFLVVMLSKSKTLGSAGASSAQPAHTTPPTTAPSSNSTP--PQEASVPPPAPT 118
+N+V E+ FLV+ML ++K G+SSA PA T APS+ + P P + S P AP
Sbjct: 61 ENQVVENNFLVIMLRQNK-----GSSSAAPAKVT-ANQAPSTQTVPATPPQTSAAPDAPA 114
Query: 119 PSIPASNVTSNVTAANA-------NSDTYGQAASNLVAGNDLEQTIQQIMDMGGGTWDKE 171
P +P S + TA+ A +D+YGQA SNLVAG++LE TI+ I++MGGGTWD++
Sbjct: 115 PIVPVSAPAATATASAAPAVAVSTEADSYGQATSNLVAGSNLEGTIKSILEMGGGTWDRD 174
Query: 172 TVTRALQAAYNNPERAVDYLYS 193
TV RAL+AAYNNPERAV+YLYS
Sbjct: 175 TVLRALRAAYNNPERAVEYLYS 196
>gi|357147838|ref|XP_003574508.1| PREDICTED: probable DNA repair protein RAD23-like [Brachypodium
distachyon]
Length = 394
Score = 197 bits (501), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 123/283 (43%), Positives = 168/283 (59%), Gaps = 22/283 (7%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
MK+++KTLKGS FEI V P+ V+ +KK IE+ QG++ YP QQ+LIH G VLK++TTL
Sbjct: 1 MKVSIKTLKGSSFEIEVDPTSKVVDLKKLIENTQGQNVYPADQQMLIHQGNVLKNDTTLE 60
Query: 61 DNKVSEDGFLVVMLSKSKTLGSAGASSAQPAHTTPPTTAPSSNSTPPQEASVPPPAP-TP 119
+NKV E+ F+V+MLSK G++SA PT P + P ++ PA TP
Sbjct: 61 ENKVLENNFIVIMLSKK------GSTSAASGTAKEPTKQPMVDRAAPVAPAMQLPAEQTP 114
Query: 120 SIPAS------------NVTSNVTAANANSDTYGQAASNLVAGNDLEQTIQQIMDMGGGT 167
P S T+ AA+ +D YGQAAS+LVAG++LE T+Q I++MGGG
Sbjct: 115 VTPVSAPVPTALAVAPPAATAAAAAASTQADPYGQAASSLVAGSNLEGTVQSILEMGGGA 174
Query: 168 WDKETVTRALQAAYNNPERAVDYLYSGIPETAEVAVPVAHFPASQAAETGAA---GAAPV 224
WD++TV AL+AA+NNPERAV+YLY+G+PE A Q + A A
Sbjct: 175 WDRDTVVHALRAAFNNPERAVEYLYTGVPEQEAPAPAQEPPALGQQGDPVQAPQSQQAVA 234
Query: 225 SGVPNSSPLNMFPQETLSGAPAGGLGSLDFLRNNQQVWSLLCC 267
S PN++PL++FPQ + + G+LD LRNN Q LL
Sbjct: 235 SSGPNANPLDLFPQVLPNASANAAGGNLDVLRNNSQFRGLLSL 277
>gi|147773186|emb|CAN62701.1| hypothetical protein VITISV_007064 [Vitis vinifera]
Length = 349
Score = 195 bits (496), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 104/141 (73%), Positives = 113/141 (80%), Gaps = 15/141 (10%)
Query: 137 SDTYGQAASNLVAGNDLEQTIQQIMDMGGGTWDKETVTRALQAAYNNPERAVDYLYSGIP 196
+DTYGQAASN+V+ N LEQTIQQIMD+GGG WDKETVTRAL+AAYNNPERAVDYLYSGIP
Sbjct: 162 ADTYGQAASNIVSANHLEQTIQQIMDIGGGNWDKETVTRALRAAYNNPERAVDYLYSGIP 221
Query: 197 ETAEVAVPVAHFPASQAAETGAAGAA-------------PVSGVPNSSPLNMFPQETLSG 243
E AEVAVPVAHFPA Q ETG ++ P SGVPNSSPLNMFPQETLSG
Sbjct: 222 EAAEVAVPVAHFPADQ--ETGGINSSTAAVAGSGAAPAAPASGVPNSSPLNMFPQETLSG 279
Query: 244 APAGGLGSLDFLRNNQQVWSL 264
A AGGLGSL+FLRNN Q +L
Sbjct: 280 AAAGGLGSLEFLRNNHQFQAL 300
>gi|388499670|gb|AFK37901.1| unknown [Medicago truncatula]
Length = 215
Score = 191 bits (484), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 105/204 (51%), Positives = 135/204 (66%), Gaps = 16/204 (7%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
MK+ VKTLKG+HFEI+V DTV VKKNIE QG YP QQ+LIH GKVLKDETTL
Sbjct: 1 MKINVKTLKGTHFEIQVNLHDTVGDVKKNIEGAQGAAVYPAAQQMLIHQGKVLKDETTLE 60
Query: 61 DNKVSEDGFLVVMLSKSKTLGSAGASSAQPAHTTPPTTAPSSNSTPPQEASVPPPAPTPS 120
+N+V+E+ F+V+MLSK+K S ++++ ++ +S+PPP TP
Sbjct: 61 ENQVAENSFIVIMLSKNKVSSSGASAAS------------AAPPAVQPASSLPPPLSTPQ 108
Query: 121 IPASNV----TSNVTAANANSDTYGQAASNLVAGNDLEQTIQQIMDMGGGTWDKETVTRA 176
AS V ++ T SNL+AG+ LE TIQQI++MGGG+WD++TV RA
Sbjct: 109 PLASTVGQGESNPAQGPVVTPPTTVVPESNLIAGSTLEPTIQQILEMGGGSWDRDTVIRA 168
Query: 177 LQAAYNNPERAVDYLYSGIPETAE 200
L+AAYNNPERAV+YLYSGIPE AE
Sbjct: 169 LRAAYNNPERAVEYLYSGIPEQAE 192
>gi|357158336|ref|XP_003578095.1| PREDICTED: probable DNA repair protein RAD23-like isoform 2
[Brachypodium distachyon]
Length = 370
Score = 187 bits (476), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 127/283 (44%), Positives = 162/283 (57%), Gaps = 44/283 (15%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
MK++VKTLKGS F+I V P+D V VKK IE QG++ YP QQ+LIH G
Sbjct: 1 MKVSVKTLKGSSFQIEVNPADKVSDVKKLIESSQGQNVYPADQQMLIHQGT--------- 51
Query: 61 DNKVSEDGFLVVMLSKSKTLGSAGASSAQPAHTTPPTTAPSSNSTPPQEASVPPP----- 115
NK S +A A S +P++ PPT +N PP +A V P
Sbjct: 52 -NKGSS--------------SAAPAKSKEPSNQAPPTQTVPAN--PPSQAPVVPAPPAAA 94
Query: 116 ---------APTPSIPASNVTSNVTAANANSDTYGQAASNLVAGNDLEQTIQQIMDMGGG 166
APTP+ AS ++ A + ++TYGQAASNLVAG +LE TIQ I++MGGG
Sbjct: 95 APAPIVPISAPTPTATAS--PASAVAVSTEAETYGQAASNLVAGGNLEATIQSILEMGGG 152
Query: 167 TWDKETVTRALQAAYNNPERAVDYLYSGIPETAEVAVPVAHFPASQAAET-GAAGAAPVS 225
TWD++TV RAL+AA+NNPERAV+YLYSGIPE E+ P + + A A S
Sbjct: 153 TWDRDTVLRALRAAFNNPERAVEYLYSGIPEPMEIPAPPPSAQPADPVQALQATQPAVAS 212
Query: 226 GVPNSSPLNMFPQET-LSGAPAGGLGSLDFLRNNQQVWSLLCC 267
PN+SPL++FPQ + A A G G+LD LRNN Q SLL
Sbjct: 213 SGPNASPLDLFPQALPNASANAAGEGNLDVLRNNAQFRSLLSL 255
>gi|194690718|gb|ACF79443.1| unknown [Zea mays]
gi|414589469|tpg|DAA40040.1| TPA: hypothetical protein ZEAMMB73_722140 [Zea mays]
Length = 365
Score = 177 bits (449), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 120/274 (43%), Positives = 158/274 (57%), Gaps = 40/274 (14%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
MK++VKTLKGS F+I V+P+D V AVKK IE++Q + +YP QQ+LIH GK
Sbjct: 1 MKVSVKTLKGSSFQIEVEPTDKVAAVKKVIENMQEQASYPADQQVLIHQGK--------- 51
Query: 61 DNKVSEDGFLVVMLSKSKTLGSAGASSAQPAHTT----PPT-TAPSSNSTPPQEASVPP- 114
+ G+SSA PA TT PPT T P + P
Sbjct: 52 ---------------------NKGSSSAAPAKTTANQAPPTQTVPVVPPQTSAAPAAPAP 90
Query: 115 --PAPTPSIPASNVTSNVTAANANSDTYGQAASNLVAGNDLEQTIQQIMDMGGGTWDKET 172
P + A+ + A + +D+YGQAASNLVAG++LE TIQ I++MGGG WD++T
Sbjct: 91 IVPVSALAATATASAAPAVAVSTEADSYGQAASNLVAGSNLEGTIQSILEMGGGIWDRDT 150
Query: 173 VTRALQAAYNNPERAVDYLYSGIPETAEVAV-PVAHFPASQAAETGAAGAAPVSGVPNSS 231
V RAL+ AYNNPERAV+YLYSGIPE +V P + P + AA A SG PN++
Sbjct: 151 VLRALRVAYNNPERAVEYLYSGIPEQMDVPTSPPSIQPVNPVQAAQAAQTAAPSG-PNAN 209
Query: 232 PLNMFPQETLSGAPAGGLGSLDFLRNNQQVWSLL 265
PL++FPQ + + G G+LD LRNN Q +LL
Sbjct: 210 PLDLFPQSLPNASANAGTGNLDVLRNNVQFQNLL 243
>gi|217071960|gb|ACJ84340.1| unknown [Medicago truncatula]
Length = 110
Score = 177 bits (449), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 82/91 (90%), Positives = 85/91 (93%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
MKLTVKTLKGSHFEIRV PSD++MAVKKNIED+QGKDNYPCGQQLLIHNGKVLKDETTLA
Sbjct: 1 MKLTVKTLKGSHFEIRVHPSDSIMAVKKNIEDIQGKDNYPCGQQLLIHNGKVLKDETTLA 60
Query: 61 DNKVSEDGFLVVMLSKSKTLGSAGASSAQPA 91
DNKVSEDGFLVVMLSKSK LGSAG SS Q
Sbjct: 61 DNKVSEDGFLVVMLSKSKVLGSAGTSSTQAC 91
>gi|356557201|ref|XP_003546906.1| PREDICTED: LOW QUALITY PROTEIN: putative DNA repair protein
RAD23-1-like [Glycine max]
Length = 284
Score = 165 bits (417), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 87/140 (62%), Positives = 107/140 (76%), Gaps = 3/140 (2%)
Query: 127 TSNVTAANANSDTYGQAASNLVAGNDLEQTIQQIMDMGGGTWDKETVTRALQAAYNNPER 186
+S+ + +DTYGQAASNLVAG+ LEQTIQQIMD+GGG+WD++TV+RAL+AAYNNP+R
Sbjct: 36 SSDAFTLDVTTDTYGQAASNLVAGSSLEQTIQQIMDLGGGSWDRDTVSRALRAAYNNPKR 95
Query: 187 AVDYLYSGIPETAEVAVPVAHFPASQAAETGAAGAAPVSG-VPNSSPLNMFPQET-LSGA 244
AVDYLYS IPE AE+AVP A +P SQ ETG A V G VPNSSPLNM PQ +SGA
Sbjct: 96 AVDYLYSRIPEAAEIAVPAAPYPISQTTETGGVTAGAVWGPVPNSSPLNMSPQVIPVSGA 155
Query: 245 PAGGLGSLDFLRNNQQVWSL 264
A G+GSL+ + Q+ +L
Sbjct: 156 GA-GIGSLELYKKCQEFQAL 174
>gi|356551713|ref|XP_003544218.1| PREDICTED: LOW QUALITY PROTEIN: putative DNA repair protein
RAD23-1-like [Glycine max]
Length = 254
Score = 158 bits (400), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 74/131 (56%), Positives = 94/131 (71%), Gaps = 1/131 (0%)
Query: 130 VTAANANSDTYGQAASNLVAGNDLEQTIQQIMDMGGGTWDKETVTRALQAAYNNPERAVD 189
+ N ++TYG ASN V G++LE+TIQQIMDMGGG+WD++TV+ AL+AA NNPE VD
Sbjct: 59 INFVNVTTNTYGLTASNXVVGSNLEKTIQQIMDMGGGSWDRDTVSHALRAAXNNPEHVVD 118
Query: 190 YLYSGIPETAEVAVPVAHFPASQAAETGAAGAAPVSGVPNSSPLNMFPQETLSGAPAGGL 249
YLYSGIPE E+ + + +P +Q + G A A V GV NSSPLNMFP+E + G A G+
Sbjct: 119 YLYSGIPEVVEIFMSIGPYPINQTTKIGGATARAVFGVHNSSPLNMFPKEIICGVGA-GI 177
Query: 250 GSLDFLRNNQQ 260
G LDF RNN Q
Sbjct: 178 GLLDFHRNNLQ 188
>gi|225423953|ref|XP_002282352.1| PREDICTED: putative DNA repair protein RAD23-3 [Vitis vinifera]
gi|297737829|emb|CBI27030.3| unnamed protein product [Vitis vinifera]
Length = 397
Score = 155 bits (391), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 84/135 (62%), Positives = 102/135 (75%), Gaps = 6/135 (4%)
Query: 135 ANSDTYGQAASNLVAGNDLEQTIQQIMDMGGGTWDKETVTRALQAAYNNPERAVDYLYSG 194
+ +D YGQAASNLVAGN+ E+ IQQI+DMGGGTWD++TV RAL+AAYNNPERAV+YLYSG
Sbjct: 151 SETDAYGQAASNLVAGNNFEEAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSG 210
Query: 195 IPETAEVAVPVAHFPAS-QAAETGAAGAAPV---SGVPNSSPLNMFPQETLS-GAPAGGL 249
IPE AEV PVA PAS QAA A PV S PN++PL++FPQ + G+ G
Sbjct: 211 IPEQAEVP-PVARAPASGQAANPPAQSQQPVPAPSSGPNANPLDLFPQGIPNVGSNPAGA 269
Query: 250 GSLDFLRNNQQVWSL 264
G+LDFLRN+QQ +L
Sbjct: 270 GTLDFLRNSQQFQAL 284
>gi|357504021|ref|XP_003622299.1| hypothetical protein MTR_7g032690 [Medicago truncatula]
gi|355497314|gb|AES78517.1| hypothetical protein MTR_7g032690 [Medicago truncatula]
Length = 398
Score = 149 bits (376), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 68/76 (89%), Positives = 72/76 (94%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
MKLTVKTLKGSHFEIRV PSD++MAVK IED+QGKDNYPC QQLLIHNGKVLKDETTLA
Sbjct: 272 MKLTVKTLKGSHFEIRVHPSDSIMAVKTTIEDIQGKDNYPCRQQLLIHNGKVLKDETTLA 331
Query: 61 DNKVSEDGFLVVMLSK 76
DN+VSEDGFLVVMLSK
Sbjct: 332 DNEVSEDGFLVVMLSK 347
>gi|357504019|ref|XP_003622298.1| hypothetical protein MTR_7g032690 [Medicago truncatula]
gi|355497313|gb|AES78516.1| hypothetical protein MTR_7g032690 [Medicago truncatula]
Length = 416
Score = 149 bits (376), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 68/76 (89%), Positives = 72/76 (94%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
MKLTVKTLKGSHFEIRV PSD++MAVK IED+QGKDNYPC QQLLIHNGKVLKDETTLA
Sbjct: 290 MKLTVKTLKGSHFEIRVHPSDSIMAVKTTIEDIQGKDNYPCRQQLLIHNGKVLKDETTLA 349
Query: 61 DNKVSEDGFLVVMLSK 76
DN+VSEDGFLVVMLSK
Sbjct: 350 DNEVSEDGFLVVMLSK 365
>gi|124359456|gb|ABN05900.1| Ubiquitin [Medicago truncatula]
Length = 674
Score = 148 bits (373), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 68/76 (89%), Positives = 72/76 (94%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
MKLTVKTLKGSHFEIRV PSD++MAVK IED+QGKDNYPC QQLLIHNGKVLKDETTLA
Sbjct: 548 MKLTVKTLKGSHFEIRVHPSDSIMAVKTTIEDIQGKDNYPCRQQLLIHNGKVLKDETTLA 607
Query: 61 DNKVSEDGFLVVMLSK 76
DN+VSEDGFLVVMLSK
Sbjct: 608 DNEVSEDGFLVVMLSK 623
>gi|357504017|ref|XP_003622297.1| hypothetical protein MTR_7g032690 [Medicago truncatula]
gi|355497312|gb|AES78515.1| hypothetical protein MTR_7g032690 [Medicago truncatula]
Length = 697
Score = 147 bits (372), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 68/76 (89%), Positives = 72/76 (94%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
MKLTVKTLKGSHFEIRV PSD++MAVK IED+QGKDNYPC QQLLIHNGKVLKDETTLA
Sbjct: 571 MKLTVKTLKGSHFEIRVHPSDSIMAVKTTIEDIQGKDNYPCRQQLLIHNGKVLKDETTLA 630
Query: 61 DNKVSEDGFLVVMLSK 76
DN+VSEDGFLVVMLSK
Sbjct: 631 DNEVSEDGFLVVMLSK 646
>gi|168046898|ref|XP_001775909.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162672741|gb|EDQ59274.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 174
Score = 147 bits (372), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 85/193 (44%), Positives = 113/193 (58%), Gaps = 24/193 (12%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
MK++VKTLKG++F++ V P +TV+ VKK IED QG+ +PC QQLLI+ GKVLKDETT+
Sbjct: 1 MKISVKTLKGNYFDLDVTPLETVINVKKRIEDSQGEQLFPCAQQLLIYQGKVLKDETTME 60
Query: 61 DNKVSEDGFLVVMLSKSKTLGSAGASSAQPAHTTPPTTAPSSNSTPPQEASVPPPAPTPS 120
DNKV E+ F VVMLSK+ + G + A Q + + T
Sbjct: 61 DNKVLENEFFVVMLSKTSNILKQGLCNL-------SMRAFFCVKYLNQHSGIGK--GTAH 111
Query: 121 IPASNVTSNVTAANANSDTYGQAASNLVAGNDLEQTIQQIMDMGGGTWDKETVTRALQAA 180
+S NV NLVAG +LE Q+I+D+GGG+WD +TV AL+AA
Sbjct: 112 FQSSR---NV------------CCFNLVAGINLESKAQEILDIGGGSWDFDTVVHALRAA 156
Query: 181 YNNPERAVDYLYS 193
NN ERA++YL S
Sbjct: 157 SNNVERALEYLSS 169
>gi|217069976|gb|ACJ83348.1| unknown [Medicago truncatula]
Length = 159
Score = 134 bits (337), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 80/159 (50%), Positives = 98/159 (61%), Gaps = 9/159 (5%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
MK+ VKTLKG+HFEI V P DT+ AVKKNIE VQG D YP QQ+LIH GKVLKD TTL
Sbjct: 1 MKVFVKTLKGTHFEIEVTPQDTISAVKKNIETVQGVDVYPAAQQMLIHQGKVLKDGTTLE 60
Query: 61 DNKVSEDGFLVVMLSKSKTLGSAGASSAQPAHTTPPTTAPSSNSTPP---------QEAS 111
+NKV+E+ F+V+MLSKSK G++++ P T+ + STPP A+
Sbjct: 61 ENKVAENSFIVIMLSKSKPASGKGSTTSNAPPAKAPQTSAAPTSTPPVSVSPQAPAATAA 120
Query: 112 VPPPAPTPSIPASNVTSNVTAANANSDTYGQAASNLVAG 150
P PS + + A SD YGQAASNLVAG
Sbjct: 121 PPASVAAPSPAPAPAPISSATATEGSDVYGQAASNLVAG 159
>gi|357138887|ref|XP_003571018.1| PREDICTED: putative DNA repair protein RAD23-1-like [Brachypodium
distachyon]
Length = 290
Score = 133 bits (334), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 70/127 (55%), Positives = 93/127 (73%), Gaps = 1/127 (0%)
Query: 138 DTYGQAASNLVAGNDLEQTIQQIMDMGGGTWDKETVTRALQAAYNNPERAVDYLYSGIPE 197
+T AS+L++G++L+ I QIM+MGGG+WD++ V RAL+AAYNNPERAVDYLYSGIP
Sbjct: 99 NTVDHVASDLLSGSNLDTMINQIMEMGGGSWDRDKVQRALRAAYNNPERAVDYLYSGIPV 158
Query: 198 TAEVAVPVAHFPASQAAETGAAGAAPVSGVPNSSPLNMFPQETLSGAPAGGLGSLDFLRN 257
TAEVAVPV + + + G +SG+PN++PL++FPQ + A G GSLDFLRN
Sbjct: 159 TAEVAVPVVPQ-GANSTDATPPGVTGLSGIPNTAPLSLFPQWASNAGGAAGGGSLDFLRN 217
Query: 258 NQQVWSL 264
NQQ +L
Sbjct: 218 NQQFQAL 224
>gi|427787569|gb|JAA59236.1| Putative nucleotide excision repair factor nef2 rad23 component
[Rhipicephalus pulchellus]
Length = 397
Score = 131 bits (330), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 82/210 (39%), Positives = 128/210 (60%), Gaps = 20/210 (9%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M +T+KTL+ F+I V PS+TV K+ IE+ +GKD YP Q LI+ GK+L D++ ++
Sbjct: 1 MIVTLKTLQQQTFKIEVDPSETVKVFKERIEEKKGKD-YPAHCQKLIYAGKILSDDSKMS 59
Query: 61 DNKVSEDGFLVVMLSKSKTLGSAGASSAQPAHTTPPTTA----PSSNSTPPQEASVPPPA 116
+ ++ E F+V+M++K K A A + P T+ +A P++ + P EA P A
Sbjct: 60 EYEIDEKKFVVIMVTKPKQSVDATAVTPGPGATSTVASAGTPSPAAGTQPAAEAQKP--A 117
Query: 117 PTPS--------IPASNVTSNVTAANANSDTYG--QAASNLVAGNDLEQTIQQIMDMGGG 166
TPS PA + + T+ A ++T G AAS LV G++ E+ +QQIM+MG
Sbjct: 118 ETPSGTSKSPAQSPAHSAATTPTSRPAAAETAGLAMAASALVMGDEYERMVQQIMEMG-- 175
Query: 167 TWDKETVTRALQAAYNNPERAVDYLYSGIP 196
+++ V RAL+A++NNP+RAV+YL +GIP
Sbjct: 176 -YERPQVERALRASFNNPDRAVEYLLTGIP 204
>gi|452824592|gb|EME31594.1| nucleotide excision repair protein [Galdieria sulphuraria]
Length = 432
Score = 130 bits (328), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 94/281 (33%), Positives = 140/281 (49%), Gaps = 36/281 (12%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQG--KDNYPCGQQLLIHNGKVLKDET- 57
MKL KTL+G F++ DTV VK+ + VQG +D C LI +GKVL +E
Sbjct: 1 MKLRFKTLQGKEFDLETSLDDTVAEVKRKVAAVQGFEQDALSC---RLIFSGKVLSNENE 57
Query: 58 TLADNKVSEDGFLVVMLSKS---KTLGSAGASSAQPAHTTPPTTAPSSNSTPPQEASVPP 114
L D V ED FLVVM K KT+G + + + T + S QE
Sbjct: 58 KLQDLNVKEDSFLVVMPPKKTYQKTMGQSSSKTDAQGKEAETTRQKETTSESVQEKQ--- 114
Query: 115 PAPTPSIPASNVTSNVTAANANSDTYGQAASNLVAGNDLEQTIQQIMDMGGGTWDKETVT 174
+ T ++ +N + T A ++S +S+ V G+ E T++ +M+MG ++++ V
Sbjct: 115 -SSTTAVTINNNDRDETKATSSSQPTSGTSSDFVIGSQYETTVKNLMEMG---FEEQQVK 170
Query: 175 RALQAAYNNPERAVDYLYSGIPETAEVAVPVAHFP-------------ASQAAETGAAGA 221
RAL+AA++NP+RAV+YL++GIPE E + P A+Q TG++G
Sbjct: 171 RALRAAFHNPDRAVEYLFNGIPENLERELGQTSLPERTSPQVGHTDRTATQENRTGSSGV 230
Query: 222 APVSG-VPNSSPLNMFPQETLSGAPAGG------LGSLDFL 255
+ + +S P NMF + A GG GSLDFL
Sbjct: 231 SSIGNQATDSQPFNMFEPQRSQTAQQGGTESTGSTGSLDFL 271
>gi|126723729|ref|NP_001075850.1| protein RAD23 repair 23 (2L942) [Oryctolagus cuniculus]
gi|1857435|gb|AAB48442.1| oncogene [Oryctolagus cuniculus]
Length = 748
Score = 129 bits (324), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 81/211 (38%), Positives = 125/211 (59%), Gaps = 21/211 (9%)
Query: 3 LTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADN 62
+T+KTL+ F+IR++P +TV +K+ IE +G+D +P Q LI+ GK+L D+ + D
Sbjct: 5 ITLKTLQQQTFKIRMEPEETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDY 64
Query: 63 KVSEDGFLVVMLSKSKTLGSAGASSAQPAHTTPPTTAPSSNSTPPQE----ASVPPPA-- 116
++ E F+VVM++K+K AG S+ P + PT AP S++T P S PPPA
Sbjct: 65 RIDEKNFVVVMVTKAK----AGQGSSAPPEAS-PTAAPESSATSPAAPASGMSHPPPATR 119
Query: 117 --PTPSIPASNVTS-----NVTAANANSDTYGQAASNLVAGNDLEQTIQQIMDMGGGTWD 169
+PS ++ TS ++ +S AAS LV G++ E + +IM MG ++
Sbjct: 120 EDKSPSEESAPTTSPESVSGSVPSSGSSGREEDAASTLVTGSEYETMLTEIMSMG---YE 176
Query: 170 KETVTRALQAAYNNPERAVDYLYSGIPETAE 200
+E V AL+A+YNNP RAV+YL +GIP + E
Sbjct: 177 RERVVAALRASYNNPHRAVEYLLTGIPGSPE 207
>gi|90079451|dbj|BAE89405.1| unnamed protein product [Macaca fascicularis]
Length = 409
Score = 128 bits (321), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 86/258 (33%), Positives = 129/258 (50%), Gaps = 49/258 (18%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++T+KTL+ F+I + P +TV A+K+ IE +GKD +P Q LI+ GK+L D+T L
Sbjct: 1 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALK 60
Query: 61 DNKVSEDGFLVVMLSKSKTLGSAGASSAQ------------------------------- 89
+ K+ E F+VVM++K K + + ++ Q
Sbjct: 61 EYKIDEKNFVVVMVTKPKAVSTPAPATTQQSAPASTTAITSSTATTVAQAPTPVPALAPT 120
Query: 90 --PAHTTPPTTAPSSNSTP----PQEASVPPPAPTPSIPASNVTSNVTAANANSDTYGQA 143
PA +TP + SS P QE PA TP + T + + ++ S+ + A
Sbjct: 121 STPASSTPASATASSEPAPASATKQEKPAEKPAETPVATSPTATDSTSGDSSRSNLFEDA 180
Query: 144 ASNLVAGNDLEQTIQQIMDMGGGTWDKETVTRALQAAYNNPERAVDYLYSGIP---ETAE 200
S LV G E + +IM MG +++E V AL+A++NNP+RAV+YL GIP E+
Sbjct: 181 TSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIPGDRESQA 237
Query: 201 VAVPVAHFPASQAAETGA 218
V P QAA TGA
Sbjct: 238 VVDP------PQAASTGA 249
>gi|441628881|ref|XP_003275714.2| PREDICTED: UV excision repair protein RAD23 homolog A [Nomascus
leucogenys]
Length = 397
Score = 128 bits (321), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 79/210 (37%), Positives = 122/210 (58%), Gaps = 19/210 (9%)
Query: 3 LTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADN 62
+T+KTL+ F+IR++P +TV +K+ IE +G+D +P Q LI+ GK+L D+ + D
Sbjct: 5 ITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDY 64
Query: 63 KVSEDGFLVVMLSKSKTLGSAGASSAQPAHTTPPTTAPSSNSTPPQEA---SVPPPA--- 116
++ E F+VVM++K+K AG ++ P +P SS S PP S PPPA
Sbjct: 65 RIDEKNFVVVMVTKTK----AGQGTSAPPEASPTAAPESSTSFPPAPTSGMSHPPPAARE 120
Query: 117 -PTPSIPASNVTS-----NVTAANANSDTYGQAASNLVAGNDLEQTIQQIMDMGGGTWDK 170
+PS ++ TS ++ +S AAS LV G++ E + +IM MG +++
Sbjct: 121 DKSPSEESAPTTSPESVSGSVPSSGSSGREEDAASTLVTGSEYETMLTEIMSMG---YER 177
Query: 171 ETVTRALQAAYNNPERAVDYLYSGIPETAE 200
E V AL+A+YNNP RAV+YL +GIP + E
Sbjct: 178 ERVVAALRASYNNPHRAVEYLLTGIPASPE 207
>gi|392996951|ref|NP_001257292.1| UV excision repair protein RAD23 homolog A isoform 3 [Homo sapiens]
gi|426387415|ref|XP_004060164.1| PREDICTED: UV excision repair protein RAD23 homolog A isoform 2
[Gorilla gorilla gorilla]
Length = 308
Score = 128 bits (321), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 91/274 (33%), Positives = 141/274 (51%), Gaps = 46/274 (16%)
Query: 3 LTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADN 62
+T+KTL+ F+IR++P +TV +K+ IE +G+D +P Q LI+ GK+L D+ + D
Sbjct: 5 ITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDY 64
Query: 63 KVSEDGFLVVMLSKSKTLGSAGASSAQPAHTTPPTTAPSSNSTPPQEA---SVPPPA--- 116
++ E F+VVM++K+K AG ++ P +P SS S PP S PPPA
Sbjct: 65 RIDEKNFVVVMVTKTK----AGQGTSAPPEASPTAAPESSTSFPPAPTSGMSHPPPAARE 120
Query: 117 -PTPSIPASNVTS-----NVTAANANSDTYGQAASNLVAGNDLEQTIQQIMDMGGGTWDK 170
+PS ++ TS ++ +S AAS LV G++ E + +IM MG +++
Sbjct: 121 DKSPSEESAPTTSPESVSGSVPSSGSSGREEDAASTLVTGSEYETMLTEIMSMG---YER 177
Query: 171 ETVTRALQAAYNNPERAVDYLYSGIPETAEVAVPVAHFPASQAAETGAAGAAPVSGVPNS 230
E V AL+A+YNNP RAV+YL +GIP + E E G+ + VS P +
Sbjct: 178 ERVVAALRASYNNPHRAVEYLLTGIPGSPE-------------PEHGSVQESQVSEQPAT 224
Query: 231 SPLNMFPQETLSGAPAGGLGSLDFLRNNQQVWSL 264
A G L+FLR+ Q ++
Sbjct: 225 E--------------AAGENPLEFLRDQPQFQNM 244
>gi|387017980|gb|AFJ51108.1| UV excision repair protein RAD23 homolog A-like [Crotalus
adamanteus]
Length = 360
Score = 127 bits (320), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 81/216 (37%), Positives = 126/216 (58%), Gaps = 32/216 (14%)
Query: 3 LTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADN 62
+T+KTL+ F+IR++P +TV +K+ IE +GK+ +P Q LI+ GK+L D+ + +
Sbjct: 5 VTLKTLQQQTFKIRMEPDETVRVLKEKIEAEKGKEAFPVSGQKLIYAGKILSDDVPIKEY 64
Query: 63 KVSEDGFLVVMLSKSKTLGSAGASS-------AQPAHTTPPTTA--------PSSNSTPP 107
K+ E F+VVM++K+KT A SS A+P ++ PT A PSS PP
Sbjct: 65 KIDEKNFVVVMVTKNKTGSGAPVSSPTDAAPTAEPTPSSGPTAATVSPLQASPSSEEKPP 124
Query: 108 QEASVPPPAPTPSIPASNVTSNVTAANANSDTYGQ---AASNLVAGNDLEQTIQQIMDMG 164
+E S+ S + S V + +S + G+ AAS LV G++ E + +IM MG
Sbjct: 125 EE----------SVTVSPLESTVGSV-PSSGSMGREDDAASTLVTGSEYETMLTEIMSMG 173
Query: 165 GGTWDKETVTRALQAAYNNPERAVDYLYSGIPETAE 200
+++E V AL+A+YNNP RAV+YL +GIP ++E
Sbjct: 174 ---YERERVVAALRASYNNPHRAVEYLLTGIPGSSE 206
>gi|4826964|ref|NP_005044.1| UV excision repair protein RAD23 homolog A isoform 1 [Homo sapiens]
gi|426387413|ref|XP_004060163.1| PREDICTED: UV excision repair protein RAD23 homolog A isoform 1
[Gorilla gorilla gorilla]
gi|1709983|sp|P54725.1|RD23A_HUMAN RecName: Full=UV excision repair protein RAD23 homolog A;
Short=HR23A; Short=hHR23A
gi|498146|dbj|BAA04767.1| HHR23A protein [Homo sapiens]
gi|1905912|gb|AAB51177.1| human RAD23A homolog [Homo sapiens]
gi|15559329|gb|AAH14026.1| RAD23 homolog A (S. cerevisiae) [Homo sapiens]
gi|23664450|gb|AAN39383.1| RAD23 homolog A (S. cerevisiae) [Homo sapiens]
gi|60813919|gb|AAX36280.1| RAD23-like A [synthetic construct]
gi|61355208|gb|AAX41114.1| RAD23-like A [synthetic construct]
gi|119604739|gb|EAW84333.1| RAD23 homolog A (S. cerevisiae), isoform CRA_a [Homo sapiens]
gi|119604740|gb|EAW84334.1| RAD23 homolog A (S. cerevisiae), isoform CRA_a [Homo sapiens]
gi|325464287|gb|ADZ15914.1| RAD23 homolog A (S. cerevisiae) [synthetic construct]
gi|410227880|gb|JAA11159.1| RAD23 homolog A [Pan troglodytes]
gi|410257472|gb|JAA16703.1| RAD23 homolog A [Pan troglodytes]
gi|410297508|gb|JAA27354.1| RAD23 homolog A [Pan troglodytes]
gi|410351505|gb|JAA42356.1| RAD23 homolog A [Pan troglodytes]
Length = 363
Score = 127 bits (320), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 91/274 (33%), Positives = 141/274 (51%), Gaps = 46/274 (16%)
Query: 3 LTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADN 62
+T+KTL+ F+IR++P +TV +K+ IE +G+D +P Q LI+ GK+L D+ + D
Sbjct: 5 ITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDY 64
Query: 63 KVSEDGFLVVMLSKSKTLGSAGASSAQPAHTTPPTTAPSSNSTPPQEA---SVPPPA--- 116
++ E F+VVM++K+K AG ++ P +P SS S PP S PPPA
Sbjct: 65 RIDEKNFVVVMVTKTK----AGQGTSAPPEASPTAAPESSTSFPPAPTSGMSHPPPAARE 120
Query: 117 -PTPSIPASNVTS-----NVTAANANSDTYGQAASNLVAGNDLEQTIQQIMDMGGGTWDK 170
+PS ++ TS ++ +S AAS LV G++ E + +IM MG +++
Sbjct: 121 DKSPSEESAPTTSPESVSGSVPSSGSSGREEDAASTLVTGSEYETMLTEIMSMG---YER 177
Query: 171 ETVTRALQAAYNNPERAVDYLYSGIPETAEVAVPVAHFPASQAAETGAAGAAPVSGVPNS 230
E V AL+A+YNNP RAV+YL +GIP + E E G+ + VS P +
Sbjct: 178 ERVVAALRASYNNPHRAVEYLLTGIPGSPE-------------PEHGSVQESQVSEQPAT 224
Query: 231 SPLNMFPQETLSGAPAGGLGSLDFLRNNQQVWSL 264
A G L+FLR+ Q ++
Sbjct: 225 E--------------AAGENPLEFLRDQPQFQNM 244
>gi|38492677|pdb|1OQY|A Chain A, Structure Of The Dna Repair Protein Hhr23a
gi|38492966|pdb|1QZE|A Chain A, Hhr23a Protein Structure Based On Residual Dipolar
Coupling Data
Length = 368
Score = 127 bits (320), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 91/274 (33%), Positives = 141/274 (51%), Gaps = 46/274 (16%)
Query: 3 LTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADN 62
+T+KTL+ F+IR++P +TV +K+ IE +G+D +P Q LI+ GK+L D+ + D
Sbjct: 10 ITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDY 69
Query: 63 KVSEDGFLVVMLSKSKTLGSAGASSAQPAHTTPPTTAPSSNSTPPQEA---SVPPPA--- 116
++ E F+VVM++K+K AG ++ P +P SS S PP S PPPA
Sbjct: 70 RIDEKNFVVVMVTKTK----AGQGTSAPPEASPTAAPESSTSFPPAPTSGMSHPPPAARE 125
Query: 117 -PTPSIPASNVTS-----NVTAANANSDTYGQAASNLVAGNDLEQTIQQIMDMGGGTWDK 170
+PS ++ TS ++ +S AAS LV G++ E + +IM MG +++
Sbjct: 126 DKSPSEESAPTTSPESVSGSVPSSGSSGREEDAASTLVTGSEYETMLTEIMSMG---YER 182
Query: 171 ETVTRALQAAYNNPERAVDYLYSGIPETAEVAVPVAHFPASQAAETGAAGAAPVSGVPNS 230
E V AL+A+YNNP RAV+YL +GIP + E E G+ + VS P +
Sbjct: 183 ERVVAALRASYNNPHRAVEYLLTGIPGSPE-------------PEHGSVQESQVSEQPAT 229
Query: 231 SPLNMFPQETLSGAPAGGLGSLDFLRNNQQVWSL 264
A G L+FLR+ Q ++
Sbjct: 230 E--------------AAGENPLEFLRDQPQFQNM 249
>gi|387849175|ref|NP_001248717.1| UV excision repair protein RAD23 homolog B [Macaca mulatta]
gi|380815240|gb|AFE79494.1| UV excision repair protein RAD23 homolog B [Macaca mulatta]
gi|380815242|gb|AFE79495.1| UV excision repair protein RAD23 homolog B [Macaca mulatta]
gi|380815244|gb|AFE79496.1| UV excision repair protein RAD23 homolog B [Macaca mulatta]
gi|380815246|gb|AFE79497.1| UV excision repair protein RAD23 homolog B [Macaca mulatta]
gi|383410191|gb|AFH28309.1| UV excision repair protein RAD23 homolog B [Macaca mulatta]
gi|384942154|gb|AFI34682.1| UV excision repair protein RAD23 homolog B [Macaca mulatta]
Length = 409
Score = 127 bits (320), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 86/258 (33%), Positives = 128/258 (49%), Gaps = 49/258 (18%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++T+KTL+ F+I + P +TV A+K+ IE +GKD +P Q LI+ GK+L D+T L
Sbjct: 1 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALK 60
Query: 61 DNKVSEDGFLVVMLSKSKTLGSAGASSAQ------------------------------- 89
+ K+ E F+VVM++K K + + ++ Q
Sbjct: 61 EYKIDEKNFVVVMVTKPKAVSTPAPATTQQSAPASTTAITSSTATTVAQAPTPVPALAPT 120
Query: 90 --PAHTTPPTTAPSSNSTP----PQEASVPPPAPTPSIPASNVTSNVTAANANSDTYGQA 143
PA TP + SS P QE PA TP + T + + ++ S+ + A
Sbjct: 121 STPASITPASATASSEPAPASATKQEKPAEKPAETPVATSPTATDSTSGDSSRSNLFEDA 180
Query: 144 ASNLVAGNDLEQTIQQIMDMGGGTWDKETVTRALQAAYNNPERAVDYLYSGIP---ETAE 200
S LV G E + +IM MG +++E V AL+A++NNP+RAV+YL GIP E+
Sbjct: 181 TSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIPGDRESQA 237
Query: 201 VAVPVAHFPASQAAETGA 218
V P QAA TGA
Sbjct: 238 VVDP------PQAASTGA 249
>gi|410259964|gb|JAA17948.1| RAD23 homolog B [Pan troglodytes]
Length = 409
Score = 127 bits (320), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 86/258 (33%), Positives = 128/258 (49%), Gaps = 49/258 (18%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++T+KTL+ F+I + P +TV A+K+ IE +GKD +P Q LI+ GK+L D+T L
Sbjct: 1 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALK 60
Query: 61 DNKVSEDGFLVVMLSKSKTLGSAGASSAQ------------------------------- 89
+ K+ E F+VVM++K K + + ++ Q
Sbjct: 61 EYKIDEKNFVVVMVTKPKAVSTPAPATTQQSAPASTTAVTCSTTTTVAQAPIPVPALAPT 120
Query: 90 --PAHTTPPTTAPSSNSTP----PQEASVPPPAPTPSIPASNVTSNVTAANANSDTYGQA 143
PA TP + SS P QE PA TP + T + + ++ S+ + A
Sbjct: 121 STPASITPASATASSEPAPASAAKQEKPAEKPAETPVATSPTATDSTSGDSSRSNLFEDA 180
Query: 144 ASNLVAGNDLEQTIQQIMDMGGGTWDKETVTRALQAAYNNPERAVDYLYSGIP---ETAE 200
S LV G E + +IM MG +++E V AL+A++NNP+RAV+YL GIP E+
Sbjct: 181 TSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIPGDRESQA 237
Query: 201 VAVPVAHFPASQAAETGA 218
V P QAA TGA
Sbjct: 238 VVDP------PQAASTGA 249
>gi|4506387|ref|NP_002865.1| UV excision repair protein RAD23 homolog B isoform 1 [Homo sapiens]
gi|397479268|ref|XP_003810947.1| PREDICTED: UV excision repair protein RAD23 homolog B-like isoform
1 [Pan paniscus]
gi|426362613|ref|XP_004048452.1| PREDICTED: UV excision repair protein RAD23 homolog B-like isoform
1 [Gorilla gorilla gorilla]
gi|1709985|sp|P54727.1|RD23B_HUMAN RecName: Full=UV excision repair protein RAD23 homolog B;
Short=HR23B; Short=hHR23B; AltName: Full=XP-C
repair-complementing complex 58 kDa protein; Short=p58
gi|498148|dbj|BAA04652.1| XP-C repair complementing protein (p58/HHR23B) [Homo sapiens]
gi|24414631|gb|AAN47194.1| RAD23 homolog B (S. cerevisiae) [Homo sapiens]
gi|60819839|gb|AAX36514.1| RAD23-like B [synthetic construct]
gi|61363174|gb|AAX42348.1| RAD23-like B [synthetic construct]
gi|119579421|gb|EAW59017.1| RAD23 homolog B (S. cerevisiae), isoform CRA_b [Homo sapiens]
gi|193785017|dbj|BAG54170.1| unnamed protein product [Homo sapiens]
gi|261858390|dbj|BAI45717.1| RAD23 homolog B [synthetic construct]
Length = 409
Score = 127 bits (320), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 86/258 (33%), Positives = 128/258 (49%), Gaps = 49/258 (18%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++T+KTL+ F+I + P +TV A+K+ IE +GKD +P Q LI+ GK+L D+T L
Sbjct: 1 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALK 60
Query: 61 DNKVSEDGFLVVMLSKSKTLGSAGASSAQ------------------------------- 89
+ K+ E F+VVM++K K + + ++ Q
Sbjct: 61 EYKIDEKNFVVVMVTKPKAVSTPAPATTQQSAPASTTAVTSSTTTTVAQAPTPVPALAPT 120
Query: 90 --PAHTTPPTTAPSSNSTP----PQEASVPPPAPTPSIPASNVTSNVTAANANSDTYGQA 143
PA TP + SS P QE PA TP + T + + ++ S+ + A
Sbjct: 121 STPASITPASATASSEPAPASAAKQEKPAEKPAETPVATSPTATDSTSGDSSRSNLFEDA 180
Query: 144 ASNLVAGNDLEQTIQQIMDMGGGTWDKETVTRALQAAYNNPERAVDYLYSGIP---ETAE 200
S LV G E + +IM MG +++E V AL+A++NNP+RAV+YL GIP E+
Sbjct: 181 TSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIPGDRESQA 237
Query: 201 VAVPVAHFPASQAAETGA 218
V P QAA TGA
Sbjct: 238 VVDP------PQAASTGA 249
>gi|54696272|gb|AAV38508.1| RAD23 homolog B (S. cerevisiae) [synthetic construct]
gi|54696274|gb|AAV38509.1| RAD23 homolog B (S. cerevisiae) [synthetic construct]
gi|60654195|gb|AAX29790.1| RAD23-like B [synthetic construct]
gi|60831141|gb|AAX36959.1| RAD23-like B [synthetic construct]
gi|61365892|gb|AAX42780.1| RAD23-like B [synthetic construct]
gi|61365900|gb|AAX42781.1| RAD23-like B [synthetic construct]
Length = 410
Score = 127 bits (320), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 86/258 (33%), Positives = 128/258 (49%), Gaps = 49/258 (18%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++T+KTL+ F+I + P +TV A+K+ IE +GKD +P Q LI+ GK+L D+T L
Sbjct: 1 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALK 60
Query: 61 DNKVSEDGFLVVMLSKSKTLGSAGASSAQ------------------------------- 89
+ K+ E F+VVM++K K + + ++ Q
Sbjct: 61 EYKIDEKNFVVVMVTKPKAVSTPAPATTQQSAPASTTAVTSSTTTTVAQAPTPVPALAPT 120
Query: 90 --PAHTTPPTTAPSSNSTP----PQEASVPPPAPTPSIPASNVTSNVTAANANSDTYGQA 143
PA TP + SS P QE PA TP + T + + ++ S+ + A
Sbjct: 121 STPASITPASATASSEPAPASAAKQEKPAEKPAETPVATSPTATDSTSGDSSRSNLFEDA 180
Query: 144 ASNLVAGNDLEQTIQQIMDMGGGTWDKETVTRALQAAYNNPERAVDYLYSGIP---ETAE 200
S LV G E + +IM MG +++E V AL+A++NNP+RAV+YL GIP E+
Sbjct: 181 TSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIPGDRESQA 237
Query: 201 VAVPVAHFPASQAAETGA 218
V P QAA TGA
Sbjct: 238 VVDP------PQAASTGA 249
>gi|402896747|ref|XP_003911450.1| PREDICTED: UV excision repair protein RAD23 homolog B-like [Papio
anubis]
Length = 409
Score = 127 bits (320), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 86/258 (33%), Positives = 128/258 (49%), Gaps = 49/258 (18%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++T+KTL+ F+I + P +TV A+K+ IE +GKD +P Q LI+ GK+L D+T L
Sbjct: 1 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALK 60
Query: 61 DNKVSEDGFLVVMLSKSKTLGSAGASSAQ------------------------------- 89
+ K+ E F+VVM++K K + + ++ Q
Sbjct: 61 EYKIDEKNFVVVMVTKPKAVSTPAPATTQQSAPASTTAVTSSTATTVAQAPTPVPALAPT 120
Query: 90 --PAHTTPPTTAPSSNSTP----PQEASVPPPAPTPSIPASNVTSNVTAANANSDTYGQA 143
PA TP + SS P QE PA TP + T + + ++ S+ + A
Sbjct: 121 STPASITPASATASSEPAPASATKQEKPTEKPAETPVATSPTATDSTSGDSSRSNLFEDA 180
Query: 144 ASNLVAGNDLEQTIQQIMDMGGGTWDKETVTRALQAAYNNPERAVDYLYSGIP---ETAE 200
S LV G E + +IM MG +++E V AL+A++NNP+RAV+YL GIP E+
Sbjct: 181 TSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIPGDRESQA 237
Query: 201 VAVPVAHFPASQAAETGA 218
V P QAA TGA
Sbjct: 238 VVDP------PQAASTGA 249
>gi|397487606|ref|XP_003814883.1| PREDICTED: UV excision repair protein RAD23 homolog A isoform 2
[Pan paniscus]
Length = 308
Score = 127 bits (319), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 91/274 (33%), Positives = 140/274 (51%), Gaps = 46/274 (16%)
Query: 3 LTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADN 62
+T+KTL+ F+IR++P +TV +K+ IE +G+D +P Q LI+ GK+L D+ + D
Sbjct: 5 ITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDY 64
Query: 63 KVSEDGFLVVMLSKSKTLGSAGASSAQPAHTTPPTTAPSSNSTPPQEA---SVPPPA--- 116
++ E F+VVM++K+K AG + P +P SS S PP S PPPA
Sbjct: 65 RIDEKNFVVVMVTKTK----AGQGTPAPPEASPTAAPESSTSFPPAPTSGMSHPPPAARE 120
Query: 117 -PTPSIPASNVTS-----NVTAANANSDTYGQAASNLVAGNDLEQTIQQIMDMGGGTWDK 170
+PS ++ TS ++ +S AAS LV G++ E + +IM MG +++
Sbjct: 121 DKSPSEESAPTTSPESVSGSVPSSGSSGREEDAASTLVTGSEYETMLTEIMSMG---YER 177
Query: 171 ETVTRALQAAYNNPERAVDYLYSGIPETAEVAVPVAHFPASQAAETGAAGAAPVSGVPNS 230
E V AL+A+YNNP RAV+YL +GIP + E E G+ + VS P +
Sbjct: 178 ERVVAALRASYNNPHRAVEYLLTGIPGSPE-------------PEHGSVQESQVSEQPAT 224
Query: 231 SPLNMFPQETLSGAPAGGLGSLDFLRNNQQVWSL 264
A G L+FLR+ Q ++
Sbjct: 225 E--------------AAGENPLEFLRDQPQFQNM 244
>gi|194374237|dbj|BAG57014.1| unnamed protein product [Homo sapiens]
Length = 403
Score = 127 bits (319), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 86/258 (33%), Positives = 128/258 (49%), Gaps = 49/258 (18%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++T+KTL+ F+I + P +TV A+K+ IE +GKD +P Q LI+ GK+L D+T L
Sbjct: 1 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALK 60
Query: 61 DNKVSEDGFLVVMLSKSKTLGSAGASSAQ------------------------------- 89
+ K+ E F+VVM++K K + + ++ Q
Sbjct: 61 EYKIDEKNFVVVMVTKPKAVSTPAPATTQQSAPASTTAVTSSTTTTVAQAPTPVPALAPT 120
Query: 90 --PAHTTPPTTAPSSNSTP----PQEASVPPPAPTPSIPASNVTSNVTAANANSDTYGQA 143
PA TP + SS P QE PA TP + T + + ++ S+ + A
Sbjct: 121 STPASITPASATASSEPAPASAAKQEKPAEKPAETPVATSPTATDSTSGDSSRSNLFEDA 180
Query: 144 ASNLVAGNDLEQTIQQIMDMGGGTWDKETVTRALQAAYNNPERAVDYLYSGIP---ETAE 200
S LV G E + +IM MG +++E V AL+A++NNP+RAV+YL GIP E+
Sbjct: 181 TSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIPGDRESQA 237
Query: 201 VAVPVAHFPASQAAETGA 218
V P QAA TGA
Sbjct: 238 VVDP------PQAASTGA 249
>gi|383420441|gb|AFH33434.1| UV excision repair protein RAD23 homolog B [Macaca mulatta]
Length = 372
Score = 127 bits (318), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 86/258 (33%), Positives = 128/258 (49%), Gaps = 49/258 (18%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++T+KTL+ F+I + P +TV A+K+ IE +GKD +P Q LI+ GK+L D+T L
Sbjct: 1 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALK 60
Query: 61 DNKVSEDGFLVVMLSKSKTLGSAGASSAQ------------------------------- 89
+ K+ E F+VVM++K K + + ++ Q
Sbjct: 61 EYKIDEKNFVVVMVTKPKAVSTPAPATTQQSAPASTTAITSSTATTVAQAPTPVPALAPT 120
Query: 90 --PAHTTPPTTAPSSNSTP----PQEASVPPPAPTPSIPASNVTSNVTAANANSDTYGQA 143
PA TP + SS P QE PA TP + T + + ++ S+ + A
Sbjct: 121 STPASITPASATASSEPAPASATKQEKPAEKPAETPVATSPTATDSTSGDSSRSNLFEDA 180
Query: 144 ASNLVAGNDLEQTIQQIMDMGGGTWDKETVTRALQAAYNNPERAVDYLYSGIP---ETAE 200
S LV G E + +IM MG +++E V AL+A++NNP+RAV+YL GIP E+
Sbjct: 181 TSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIPGDRESQA 237
Query: 201 VAVPVAHFPASQAAETGA 218
V P QAA TGA
Sbjct: 238 VVDP------PQAASTGA 249
>gi|158260839|dbj|BAF82597.1| unnamed protein product [Homo sapiens]
Length = 362
Score = 127 bits (318), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 79/206 (38%), Positives = 123/206 (59%), Gaps = 19/206 (9%)
Query: 3 LTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADN 62
+T+KTL+ F+IR++P +TV +K+ IE +G+D +P Q LI+ GK+L D+ + D
Sbjct: 5 ITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDY 64
Query: 63 KVSEDGFLVVMLSKSKTLGSAGASSAQPAHTTPPTTAPSSNSTPPQEA---SVPPPA--- 116
++ E F+VVM++K+K AG ++ P +P SS S PP S PPPA
Sbjct: 65 RIDEKNFVVVMVTKTK----AGQGTSAPPEASPTAAPESSTSFPPAPTSGMSHPPPAARE 120
Query: 117 -PTPSIPASNVTS----NVTAANANSDTYGQ-AASNLVAGNDLEQTIQQIMDMGGGTWDK 170
+PS ++ TS + + ++ S G+ AAS LV G++ E + +IM MG +++
Sbjct: 121 DKSPSEESAPTTSPESVSGSVPSSGSSGRGEDAASTLVTGSEYETMLTEIMSMG---YER 177
Query: 171 ETVTRALQAAYNNPERAVDYLYSGIP 196
E V AL+A+YNNP RAV+YL +GIP
Sbjct: 178 ERVVAALRASYNNPHRAVEYLLTGIP 203
>gi|62089006|dbj|BAD92950.1| UV excision repair protein RAD23 homolog A variant [Homo sapiens]
Length = 379
Score = 127 bits (318), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 79/210 (37%), Positives = 122/210 (58%), Gaps = 19/210 (9%)
Query: 3 LTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADN 62
+T+KTL+ F+IR++P +TV +K+ IE +G+D +P Q LI+ GK+L D+ + D
Sbjct: 22 ITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDY 81
Query: 63 KVSEDGFLVVMLSKSKTLGSAGASSAQPAHTTPPTTAPSSNSTPPQEA---SVPPPA--- 116
++ E F+VVM++K+K AG ++ P +P SS S PP S PPPA
Sbjct: 82 RIDEKNFVVVMVTKTK----AGQGTSAPPEASPTAAPESSTSFPPAPTSGMSHPPPAARE 137
Query: 117 -PTPSIPASNVTS-----NVTAANANSDTYGQAASNLVAGNDLEQTIQQIMDMGGGTWDK 170
+PS ++ TS ++ +S AAS LV G++ E + +IM MG +++
Sbjct: 138 DKSPSEESAPTTSPESVSGSVPSSGSSGREEDAASTLVTGSEYETMLTEIMSMG---YER 194
Query: 171 ETVTRALQAAYNNPERAVDYLYSGIPETAE 200
E V AL+A+YNNP RAV+YL +GIP + E
Sbjct: 195 ERVVAALRASYNNPHRAVEYLLTGIPGSPE 224
>gi|392996949|ref|NP_001257291.1| UV excision repair protein RAD23 homolog A isoform 2 [Homo sapiens]
gi|208965418|dbj|BAG72723.1| RAD23 homolog A [synthetic construct]
Length = 362
Score = 127 bits (318), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 78/206 (37%), Positives = 120/206 (58%), Gaps = 19/206 (9%)
Query: 3 LTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADN 62
+T+KTL+ F+IR++P +TV +K+ IE +G+D +P Q LI+ GK+L D+ + D
Sbjct: 5 ITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDY 64
Query: 63 KVSEDGFLVVMLSKSKTLGSAGASSAQPAHTTPPTTAPSSNSTPPQEA---SVPPPA--- 116
++ E F+VVM++K+K AG ++ P +P SS S PP S PPPA
Sbjct: 65 RIDEKNFVVVMVTKTK----AGQGTSAPPEASPTAAPESSTSFPPAPTSGMSHPPPAARE 120
Query: 117 -PTPSIPASNVTS-----NVTAANANSDTYGQAASNLVAGNDLEQTIQQIMDMGGGTWDK 170
+PS ++ TS ++ +S AAS LV G++ E + +IM MG +++
Sbjct: 121 DKSPSEESAPTTSPESVSGSVPSSGSSGREEDAASTLVTGSEYETMLTEIMSMG---YER 177
Query: 171 ETVTRALQAAYNNPERAVDYLYSGIP 196
E V AL+A+YNNP RAV+YL +GIP
Sbjct: 178 ERVVAALRASYNNPHRAVEYLLTGIP 203
>gi|397487604|ref|XP_003814882.1| PREDICTED: UV excision repair protein RAD23 homolog A isoform 1
[Pan paniscus]
Length = 363
Score = 127 bits (318), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 91/274 (33%), Positives = 140/274 (51%), Gaps = 46/274 (16%)
Query: 3 LTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADN 62
+T+KTL+ F+IR++P +TV +K+ IE +G+D +P Q LI+ GK+L D+ + D
Sbjct: 5 ITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDY 64
Query: 63 KVSEDGFLVVMLSKSKTLGSAGASSAQPAHTTPPTTAPSSNSTPPQEA---SVPPPA--- 116
++ E F+VVM++K+K AG + P +P SS S PP S PPPA
Sbjct: 65 RIDEKNFVVVMVTKTK----AGQGTPAPPEASPTAAPESSTSFPPAPTSGMSHPPPAARE 120
Query: 117 -PTPSIPASNVTS-----NVTAANANSDTYGQAASNLVAGNDLEQTIQQIMDMGGGTWDK 170
+PS ++ TS ++ +S AAS LV G++ E + +IM MG +++
Sbjct: 121 DKSPSEESAPTTSPESVSGSVPSSGSSGREEDAASTLVTGSEYETMLTEIMSMG---YER 177
Query: 171 ETVTRALQAAYNNPERAVDYLYSGIPETAEVAVPVAHFPASQAAETGAAGAAPVSGVPNS 230
E V AL+A+YNNP RAV+YL +GIP + E E G+ + VS P +
Sbjct: 178 ERVVAALRASYNNPHRAVEYLLTGIPGSPE-------------PEHGSVQESQVSEQPAT 224
Query: 231 SPLNMFPQETLSGAPAGGLGSLDFLRNNQQVWSL 264
A G L+FLR+ Q ++
Sbjct: 225 E--------------AAGENPLEFLRDQPQFQNM 244
>gi|56789929|gb|AAH88364.1| RAD23 homolog A (S. cerevisiae) [Homo sapiens]
Length = 362
Score = 127 bits (318), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 78/206 (37%), Positives = 120/206 (58%), Gaps = 19/206 (9%)
Query: 3 LTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADN 62
+T+KTL+ F+IR++P +TV +K+ IE +G+D +P Q LI+ GK+L D+ + D
Sbjct: 5 ITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDY 64
Query: 63 KVSEDGFLVVMLSKSKTLGSAGASSAQPAHTTPPTTAPSSNSTPPQEA---SVPPPA--- 116
++ E F+VVM++K+K AG ++ P +P SS S PP S PPPA
Sbjct: 65 RIDEKNFVVVMVTKTK----AGQGTSAPPEASPTAAPESSTSFPPAPTSGMSHPPPAARE 120
Query: 117 -PTPSIPASNVTS-----NVTAANANSDTYGQAASNLVAGNDLEQTIQQIMDMGGGTWDK 170
+PS ++ TS ++ +S AAS LV G++ E + +IM MG +++
Sbjct: 121 DKSPSEESAPATSPESVSGSVPSSGSSGREEDAASTLVTGSEYETMLTEIMSMG---YER 177
Query: 171 ETVTRALQAAYNNPERAVDYLYSGIP 196
E V AL+A+YNNP RAV+YL +GIP
Sbjct: 178 ERVVAALRASYNNPHRAVEYLLTGIP 203
>gi|45829444|gb|AAH68193.1| Rad23b protein [Mus musculus]
Length = 415
Score = 127 bits (318), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 88/254 (34%), Positives = 133/254 (52%), Gaps = 42/254 (16%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++T+KTL+ F+I + P +TV A+K+ IE +GKD +P Q LI+ GK+L D+T L
Sbjct: 1 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILSDDTALK 60
Query: 61 DNKVSEDGFLVVMLSKSKTLGSAGASSAQPAHT--------------------------- 93
+ K+ E F+VVM++K K + +A ++ QP+ T
Sbjct: 61 EYKIDEKNFVVVMVTKPKAVTTAVPATTQPSSTPSPTAVSSSPAVAAAQAPAPTPALPPT 120
Query: 94 -TPPTTAPSS---NSTP-PQEASVP-----PPAPTPSIPASNVTSNVTAANANSDTYGQA 143
TP +TAP+S +S P P A+ P PA TP + + + ++ S+ + A
Sbjct: 121 STPASTAPASTTASSEPAPAGATQPEKPAEKPAQTPVLTSPAPADSTPGDSSRSNLFEDA 180
Query: 144 ASNLVAGNDLEQTIQQIMDMGGGTWDKETVTRALQAAYNNPERAVDYLYSGIPETAEVAV 203
S LV G E + +IM MG +++E V AL+A++NNP+RAV+YL GIP E
Sbjct: 181 TSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIPGDRESQA 237
Query: 204 PVAHFPASQAAETG 217
V P QA TG
Sbjct: 238 VVD--PPPQAVSTG 249
>gi|61370793|gb|AAX43553.1| RAD23-like B [synthetic construct]
Length = 410
Score = 126 bits (317), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 77/233 (33%), Positives = 118/233 (50%), Gaps = 40/233 (17%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++T+KTL+ F+I + P +TV A+K+ IE +GKD +P Q LI+ GK+L D+T L
Sbjct: 1 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALK 60
Query: 61 DNKVSEDGFLVVMLSKSKTLGSAGASSAQ------------------------------- 89
+ K+ E F+VVM++K K + + ++ Q
Sbjct: 61 EYKIDEKNFVVVMVTKPKAVSTPAPATTQQSAPASTTAVTSSTTTTVAQAPTPVPALAPT 120
Query: 90 --PAHTTPPTTAPSSNSTP----PQEASVPPPAPTPSIPASNVTSNVTAANANSDTYGQA 143
PA TP + SS P QE PA TP + T + + ++ S+ + A
Sbjct: 121 STPASITPASATASSEPAPASAAKQEKPAEKPAETPVATSPTATDSTSGDSSRSNLFEDA 180
Query: 144 ASNLVAGNDLEQTIQQIMDMGGGTWDKETVTRALQAAYNNPERAVDYLYSGIP 196
S LV G E + +IM MG +++E V AL+A++NNP+RAV+YL GIP
Sbjct: 181 TSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIP 230
>gi|171906578|ref|NP_033037.2| UV excision repair protein RAD23 homolog B [Mus musculus]
gi|341941948|sp|P54728.2|RD23B_MOUSE RecName: Full=UV excision repair protein RAD23 homolog B;
Short=HR23B; Short=mHR23B; AltName: Full=XP-C
repair-complementing complex 58 kDa protein; Short=p58
gi|74144435|dbj|BAE36067.1| unnamed protein product [Mus musculus]
gi|74144449|dbj|BAE36071.1| unnamed protein product [Mus musculus]
gi|74145328|dbj|BAE36124.1| unnamed protein product [Mus musculus]
gi|74211909|dbj|BAE29298.1| unnamed protein product [Mus musculus]
Length = 416
Score = 126 bits (317), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 88/254 (34%), Positives = 133/254 (52%), Gaps = 42/254 (16%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++T+KTL+ F+I + P +TV A+K+ IE +GKD +P Q LI+ GK+L D+T L
Sbjct: 1 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILSDDTALK 60
Query: 61 DNKVSEDGFLVVMLSKSKTLGSAGASSAQPAHT--------------------------- 93
+ K+ E F+VVM++K K + +A ++ QP+ T
Sbjct: 61 EYKIDEKNFVVVMVTKPKAVTTAVPATTQPSSTPSPTAVSSSPAVAAAQAPAPTPALPPT 120
Query: 94 -TPPTTAPSS---NSTP-PQEASVP-----PPAPTPSIPASNVTSNVTAANANSDTYGQA 143
TP +TAP+S +S P P A+ P PA TP + + + ++ S+ + A
Sbjct: 121 STPASTAPASTTASSEPAPAGATQPEKPAEKPAQTPVLTSPAPADSTPGDSSRSNLFEDA 180
Query: 144 ASNLVAGNDLEQTIQQIMDMGGGTWDKETVTRALQAAYNNPERAVDYLYSGIPETAEVAV 203
S LV G E + +IM MG +++E V AL+A++NNP+RAV+YL GIP E
Sbjct: 181 TSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIPGDRESQA 237
Query: 204 PVAHFPASQAAETG 217
V P QA TG
Sbjct: 238 VVD--PPPQAVSTG 249
>gi|18089249|gb|AAH20973.1| RAD23B protein [Homo sapiens]
gi|61361084|gb|AAX41987.1| RAD23-like B [synthetic construct]
gi|123994101|gb|ABM84652.1| RAD23 homolog B (S. cerevisiae) [synthetic construct]
gi|124126815|gb|ABM92180.1| RAD23 homolog B (S. cerevisiae) [synthetic construct]
Length = 409
Score = 126 bits (317), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 77/233 (33%), Positives = 118/233 (50%), Gaps = 40/233 (17%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++T+KTL+ F+I + P +TV A+K+ IE +GKD +P Q LI+ GK+L D+T L
Sbjct: 1 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALK 60
Query: 61 DNKVSEDGFLVVMLSKSKTLGSAGASSAQ------------------------------- 89
+ K+ E F+VVM++K K + + ++ Q
Sbjct: 61 EYKIDEKNFVVVMVTKPKAVSTPAPATTQQSAPASTTAVTSSTTTTVAQAPTPVPALAPT 120
Query: 90 --PAHTTPPTTAPSSNSTP----PQEASVPPPAPTPSIPASNVTSNVTAANANSDTYGQA 143
PA TP + SS P QE PA TP + T + + ++ S+ + A
Sbjct: 121 STPASITPASATASSEPAPASAAKQEKPAEKPAETPVATSPTATDSTSGDSSRSNLFEDA 180
Query: 144 ASNLVAGNDLEQTIQQIMDMGGGTWDKETVTRALQAAYNNPERAVDYLYSGIP 196
S LV G E + +IM MG +++E V AL+A++NNP+RAV+YL GIP
Sbjct: 181 TSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIP 230
>gi|348570354|ref|XP_003470962.1| PREDICTED: UV excision repair protein RAD23 homolog B-like [Cavia
porcellus]
Length = 409
Score = 126 bits (317), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 78/233 (33%), Positives = 117/233 (50%), Gaps = 40/233 (17%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++T+KTL+ F+I + P +TV A+K+ IE +GKD +P Q LI+ GK+L D+T L
Sbjct: 1 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALK 60
Query: 61 DNKVSEDGFLVVMLSKSKTLGSAGASSAQ------------------------------- 89
+ K+ E F+VVM++K K + + ++ Q
Sbjct: 61 EYKIDEKNFVVVMVTKPKAVTTPAPATTQQSSPVSTTTVSSSTATAVAQASTPAPALAPT 120
Query: 90 --PAHTTPPTTAPSSNSTPP----QEASVPPPAPTPSIPASNVTSNVTAANANSDTYGQA 143
PA P T SS P QE PA TP + T N + ++ S+ + A
Sbjct: 121 STPAPIAPAVTTASSEPVPASAAQQEKPAEKPAETPPASSPTSTDNTSGDSSRSNLFEDA 180
Query: 144 ASNLVAGNDLEQTIQQIMDMGGGTWDKETVTRALQAAYNNPERAVDYLYSGIP 196
S LV G E + +IM MG +++E V AL+A++NNP+RAV+YL GIP
Sbjct: 181 TSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIP 230
>gi|74209288|dbj|BAE25006.1| unnamed protein product [Mus musculus]
Length = 411
Score = 126 bits (317), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 88/254 (34%), Positives = 133/254 (52%), Gaps = 42/254 (16%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++T+KTL+ F+I + P +TV A+K+ IE +GKD +P Q LI+ GK+L D+T L
Sbjct: 1 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILSDDTALK 60
Query: 61 DNKVSEDGFLVVMLSKSKTLGSAGASSAQPAHT--------------------------- 93
+ K+ E F+VVM++K K + +A ++ QP+ T
Sbjct: 61 EYKIDEKNFVVVMVTKPKAVTTAVPATTQPSSTPSPTAVSSSPAVAAAQAPAPTPALPPT 120
Query: 94 -TPPTTAPSS---NSTP-PQEASVP-----PPAPTPSIPASNVTSNVTAANANSDTYGQA 143
TP +TAP+S +S P P A+ P PA TP + + + ++ S+ + A
Sbjct: 121 STPASTAPASTTASSEPAPAGATQPEKPAEKPAQTPVLTSPAPADSTPGDSSRSNLFEDA 180
Query: 144 ASNLVAGNDLEQTIQQIMDMGGGTWDKETVTRALQAAYNNPERAVDYLYSGIPETAEVAV 203
S LV G E + +IM MG +++E V AL+A++NNP+RAV+YL GIP E
Sbjct: 181 TSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIPGDRESQA 237
Query: 204 PVAHFPASQAAETG 217
V P QA TG
Sbjct: 238 VVD--PPPQAVSTG 249
>gi|410950560|ref|XP_003981972.1| PREDICTED: UV excision repair protein RAD23 homolog A isoform 1
[Felis catus]
Length = 362
Score = 126 bits (317), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 92/274 (33%), Positives = 143/274 (52%), Gaps = 47/274 (17%)
Query: 3 LTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADN 62
+T+KTL+ F+IR++P +TV +K+ IE +G+D +P Q LI+ GK+L D+ + D
Sbjct: 5 ITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDY 64
Query: 63 KVSEDGFLVVMLSKSKTLGSAGASSAQPAHTTPPTTAPSSNSTPPQEAS-VPPPAPT--- 118
++ E F+VVM++K+KT S G S P +P SS S PP AS + P+PT
Sbjct: 65 RIDEKNFVVVMVTKAKT--SPGTSV--PPEASPTAAPESSTSFPPAPASGMSQPSPTARE 120
Query: 119 ------PSIPASNVTSNVTAANANSDTYGQ--AASNLVAGNDLEQTIQQIMDMGGGTWDK 170
S+P ++ S + ++ + + AAS LV G++ E + +IM MG +++
Sbjct: 121 DKSPSEESVPTTSPESVSGSVPSSGSSGREEDAASTLVTGSEYETMLTEIMSMG---YER 177
Query: 171 ETVTRALQAAYNNPERAVDYLYSGIPETAEVAVPVAHFPASQAAETGAAGAAPVSGVPNS 230
E V AL+A+YNNP RAV+YL +GIP + E E G+ + VS P
Sbjct: 178 ERVVAALRASYNNPHRAVEYLLTGIPGSPE-------------PEHGSVQESQVSEQP-- 222
Query: 231 SPLNMFPQETLSGAPAGGLGSLDFLRNNQQVWSL 264
A GG L+FLR+ Q ++
Sbjct: 223 -------------ATEGGENPLEFLRDQPQFQNM 243
>gi|74195673|dbj|BAE39643.1| unnamed protein product [Mus musculus]
Length = 327
Score = 126 bits (317), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 88/254 (34%), Positives = 133/254 (52%), Gaps = 42/254 (16%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++T+KTL+ F+I + P +TV A+K+ IE +GKD +P Q LI+ GK+L D+T L
Sbjct: 1 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILSDDTALK 60
Query: 61 DNKVSEDGFLVVMLSKSKTLGSAGASSAQPAHT--------------------------- 93
+ K+ E F+VVM++K K + +A ++ QP+ T
Sbjct: 61 EYKIDEKNFVVVMVTKPKAVTTAVPATTQPSSTPSPTAVSSSPAVAAAQAPAPTPALPPT 120
Query: 94 -TPPTTAPSS---NSTP-PQEASVP-----PPAPTPSIPASNVTSNVTAANANSDTYGQA 143
TP +TAP+S +S P P A+ P PA TP + + + ++ S+ + A
Sbjct: 121 STPASTAPASTTASSEPAPAGATQPEKPAEKPAQTPVLTSPAPADSTPGDSSRSNLFEDA 180
Query: 144 ASNLVAGNDLEQTIQQIMDMGGGTWDKETVTRALQAAYNNPERAVDYLYSGIPETAEVAV 203
S LV G E + +IM MG +++E V AL+A++NNP+RAV+YL GIP E
Sbjct: 181 TSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIPGDRESQA 237
Query: 204 PVAHFPASQAAETG 217
V P QA TG
Sbjct: 238 VVD--PPPQAVSTG 249
>gi|296233062|ref|XP_002807846.1| PREDICTED: UV excision repair protein RAD23 homolog A [Callithrix
jacchus]
Length = 363
Score = 126 bits (317), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 91/275 (33%), Positives = 144/275 (52%), Gaps = 48/275 (17%)
Query: 3 LTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADN 62
+T+KTL+ F+IR++P +TV +K+ IE +G+D +P Q LI+ GK+L D+ + D
Sbjct: 5 ITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDY 64
Query: 63 KVSEDGFLVVMLSKSKTLGSAGASSAQPAHTTPPTTAPSSNST----PPQEASVPPPA-- 116
++ E F+VVM++K+K AG ++ P + PT AP S+++ P S PPPA
Sbjct: 65 RIDEKNFVVVMVTKTK----AGQGTSAPPEAS-PTAAPESSTSFLPAPTSGMSHPPPAAR 119
Query: 117 --PTPSIPASNVTS-----NVTAANANSDTYGQAASNLVAGNDLEQTIQQIMDMGGGTWD 169
+PS ++ TS ++ +S AAS LV G++ E + +IM MG ++
Sbjct: 120 EDKSPSEESAPTTSPESVSGSVPSSGSSGREEDAASTLVTGSEYETMLTEIMSMG---YE 176
Query: 170 KETVTRALQAAYNNPERAVDYLYSGIPETAEVAVPVAHFPASQAAETGAAGAAPVSGVPN 229
+E V AL+A+YNNP RAV+YL +GIP + E E G+ + VS P
Sbjct: 177 RERVVAALRASYNNPHRAVEYLLTGIPGSPE-------------PEHGSVQESQVSEQPA 223
Query: 230 SSPLNMFPQETLSGAPAGGLGSLDFLRNNQQVWSL 264
+ A G L+FLR+ Q ++
Sbjct: 224 TE--------------AAGENPLEFLRDQPQFQNM 244
>gi|344282700|ref|XP_003413111.1| PREDICTED: UV excision repair protein RAD23 homolog A [Loxodonta
africana]
Length = 363
Score = 126 bits (317), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 79/206 (38%), Positives = 122/206 (59%), Gaps = 19/206 (9%)
Query: 3 LTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADN 62
+T+KTL+ F+IR++P +TV +K+ IE +G+D +P Q LI+ GK+L D+ + D
Sbjct: 5 ITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDY 64
Query: 63 KVSEDGFLVVMLSKSKTLGSAGASSAQPAHTTPPTTAPSSNSTPPQEA---SVPPP---- 115
++ E F+VVM++K+K AG ++ P T+P SS S PP A S PPP
Sbjct: 65 RIDEKNFVVVMVTKAK----AGPGTSAPPETSPTAAPESSTSFPPAPASGMSHPPPTAKE 120
Query: 116 --APT-PSIP--ASNVTSNVTAANANSDTYGQAASNLVAGNDLEQTIQQIMDMGGGTWDK 170
+P+ S+P + S ++ +S AAS LV G++ E + +IM MG +++
Sbjct: 121 DKSPSEESVPTMSPESVSGSVPSSGSSGREEDAASTLVTGSEYETMLTEIMSMG---YER 177
Query: 171 ETVTRALQAAYNNPERAVDYLYSGIP 196
E V AL+A+YNNP RAV+YL +GIP
Sbjct: 178 ERVVAALRASYNNPHRAVEYLLTGIP 203
>gi|426228904|ref|XP_004008535.1| PREDICTED: UV excision repair protein RAD23 homolog A isoform 2
[Ovis aries]
Length = 311
Score = 126 bits (317), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 88/275 (32%), Positives = 142/275 (51%), Gaps = 45/275 (16%)
Query: 3 LTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADN 62
+T+KTL+ F+IR++P +TV +K+ IE +G+D +P Q LI+ GK+L D+ + D
Sbjct: 5 ITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDY 64
Query: 63 KVSEDGFLVVMLSKSKTL-GSAGASSAQPAHTTPPTTAPSSNSTPPQEASVPPP------ 115
++ E F+VVM++K+KT G++ S A P T P ++ S S P S PPP
Sbjct: 65 RIDEKNFVVVMVTKAKTSPGTSVPSEASPTAT--PESSTSFPSAPASGMSHPPPTAREDK 122
Query: 116 ------APTPSIPASNVTSNVTAANANSDTYGQAASNLVAGNDLEQTIQQIMDMGGGTWD 169
APT S + + + + ++ + AA + V G++ E + +IM MG ++
Sbjct: 123 SPSEESAPTTSPESVSGSVPSSGSSGREEDVAFAAPSTVTGSEYETMLTEIMSMG---YE 179
Query: 170 KETVTRALQAAYNNPERAVDYLYSGIPETAEVAVPVAHFPASQAAETGAAGAAPVSGVPN 229
+E V AL+A+YNNP RAV+YL +GIP + E E G+ + VS P+
Sbjct: 180 RERVVAALRASYNNPHRAVEYLLTGIPGSPE-------------PEHGSVQESQVSEQPS 226
Query: 230 SSPLNMFPQETLSGAPAGGLGSLDFLRNNQQVWSL 264
+ A G L+FLR+ Q ++
Sbjct: 227 TE--------------AAGENPLEFLRDQPQFQNM 247
>gi|74178713|dbj|BAE34014.1| unnamed protein product [Mus musculus]
Length = 416
Score = 126 bits (317), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 88/254 (34%), Positives = 133/254 (52%), Gaps = 42/254 (16%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++T+KTL+ F+I + P +TV A+K+ IE +GKD +P Q LI+ GK+L D+T L
Sbjct: 1 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILSDDTALK 60
Query: 61 DNKVSEDGFLVVMLSKSKTLGSAGASSAQPAHT--------------------------- 93
+ K+ E F+VVM++K K + +A ++ QP+ T
Sbjct: 61 EYKIDEKNFVVVMVTKPKAVTTAVPATTQPSSTPSPTAVSSSPAVAAAQAPAPTPALPPT 120
Query: 94 -TPPTTAPSS---NSTP-PQEASVP-----PPAPTPSIPASNVTSNVTAANANSDTYGQA 143
TP +TAP+S +S P P A+ P PA TP + + + ++ S+ + A
Sbjct: 121 STPASTAPASTTASSEPAPAGATQPEKPAEKPAQTPVLTSPAPADSTPGDSSRSNLFEDA 180
Query: 144 ASNLVAGNDLEQTIQQIMDMGGGTWDKETVTRALQAAYNNPERAVDYLYSGIPETAEVAV 203
S LV G E + +IM MG +++E V AL+A++NNP+RAV+YL GIP E
Sbjct: 181 TSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIPGDRESQA 237
Query: 204 PVAHFPASQAAETG 217
V P QA TG
Sbjct: 238 VVD--PPPQAVSTG 249
>gi|73986456|ref|XP_542038.2| PREDICTED: UV excision repair protein RAD23 homolog A isoform 1
[Canis lupus familiaris]
Length = 362
Score = 126 bits (316), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 93/274 (33%), Positives = 144/274 (52%), Gaps = 47/274 (17%)
Query: 3 LTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADN 62
+T+KTL+ F+IR++P +TV +K+ IE +G+D +P Q LI+ GK+L D+ + D
Sbjct: 5 ITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDY 64
Query: 63 KVSEDGFLVVMLSKSKTLGSAGASSAQPAHTTPPTTAPSSNSTPPQEA---SVPPP---- 115
++ E F+VVM++K+KT S G S P +P SS S PP A S PPP
Sbjct: 65 RIDEKNFVVVMVTKAKT--SPGTSV--PPEASPTAAPESSTSFPPAPASGMSHPPPTARE 120
Query: 116 --APT-PSIPASNVTSNVTAANANSDTYGQ--AASNLVAGNDLEQTIQQIMDMGGGTWDK 170
+P+ S+P ++ S + ++ + + AAS LV G++ E + +IM MG +++
Sbjct: 121 DKSPSEESVPTTSPESVSGSVPSSGSSGREEDAASTLVTGSEYETMLTEIMSMG---YER 177
Query: 171 ETVTRALQAAYNNPERAVDYLYSGIPETAEVAVPVAHFPASQAAETGAAGAAPVSGVPNS 230
E V AL+A+YNNP RAV+YL +GIP + E E G+ + VS P
Sbjct: 178 ERVVAALRASYNNPHRAVEYLLTGIPGSPE-------------PEHGSVQESQVSEQP-- 222
Query: 231 SPLNMFPQETLSGAPAGGLGSLDFLRNNQQVWSL 264
A GG L+FLR+ Q ++
Sbjct: 223 -------------ATEGGENPLEFLRDQPQFQNM 243
>gi|149641954|ref|XP_001513724.1| PREDICTED: UV excision repair protein RAD23 homolog A-like
[Ornithorhynchus anatinus]
Length = 360
Score = 126 bits (316), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 86/220 (39%), Positives = 127/220 (57%), Gaps = 41/220 (18%)
Query: 3 LTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADN 62
+T+KTL+ F+IR++P +TV +K+ IE +G+D +P Q LI+ GK+L D+T + D
Sbjct: 5 ITLKTLQQQTFKIRMEPEETVKVLKEKIEAEKGQDAFPVAGQKLIYAGKILNDDTPIRDY 64
Query: 63 KVSEDGFLVVMLSKSKT-LGSAGASSAQPAHTTPPTTAPSSNSTPPQEASVPPPAP---- 117
K+ E F+VVM++K+K+ LG+ + PP TAP+S E SV PA
Sbjct: 65 KIDEKNFVVVMVTKTKSGLGT----------SVPPETAPAS------EPSVSAPAASIVA 108
Query: 118 ---TPSIP------ASNVTS-----NVTAANANSDTYGQ---AASNLVAGNDLEQTIQQI 160
TPS P A N TS VT + +S + G+ AAS LV G++ E + +I
Sbjct: 109 MPLTPSSPKEERPTADNPTSLPPPETVTGSVPSSGSIGREDDAASTLVTGSEYETMLTEI 168
Query: 161 MDMGGGTWDKETVTRALQAAYNNPERAVDYLYSGIPETAE 200
M MG +++E V AL+A++NNP RAV+YL GIP + E
Sbjct: 169 MSMG---YEQEQVVAALRASFNNPHRAVEYLLMGIPGSPE 205
>gi|410225240|gb|JAA09839.1| RAD23 homolog B [Pan troglodytes]
Length = 409
Score = 126 bits (316), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 86/258 (33%), Positives = 131/258 (50%), Gaps = 49/258 (18%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++T+KTL+ F+I + P +TV A+K+ IE +GKD +P Q LI+ GK+L D+T L
Sbjct: 1 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALK 60
Query: 61 DNKVSEDGFLVVMLSKSKTLGSAGASSAQ---PAH------------------------- 92
+ K+ E F+VVM++K K + + ++ Q PA
Sbjct: 61 EYKIEEKNFVVVMVTKPKAVSTPAPATTQQSAPASTTAVTCSTTTTVAQAPIPVPALAPT 120
Query: 93 ----TTPPTTAPSSNSTPP-----QEASVPPPAPTPSIPASNVTSNVTAANANSDTYGQA 143
+ PP +A +S+ P QE PA TP + T + + ++ S+ + A
Sbjct: 121 STPASIPPASATASSEPAPASAAKQEKPAEKPAETPVATSPTATDSTSGDSSRSNLFEDA 180
Query: 144 ASNLVAGNDLEQTIQQIMDMGGGTWDKETVTRALQAAYNNPERAVDYLYSGIP---ETAE 200
S LV G E + +IM MG +++E V AL+A++NNP+RAV+YL GIP E+
Sbjct: 181 TSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIPGDRESQA 237
Query: 201 VAVPVAHFPASQAAETGA 218
V P QAA TGA
Sbjct: 238 VVDP------PQAASTGA 249
>gi|1044899|emb|CAA63146.1| MHR23B [Mus musculus]
gi|20380714|gb|AAH27747.1| RAD23b homolog (S. cerevisiae) [Mus musculus]
gi|148670319|gb|EDL02266.1| RAD23b homolog (S. cerevisiae), isoform CRA_c [Mus musculus]
gi|1587278|prf||2206377B MHR23B gene
Length = 416
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 85/254 (33%), Positives = 128/254 (50%), Gaps = 42/254 (16%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++T+KTL+ F+I + P +TV A+K+ IE +GKD +P Q LI+ GK+L D+T L
Sbjct: 1 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILSDDTALK 60
Query: 61 DNKVSEDGFLVVMLSKSKTLGSAGASSAQPAHTTPPTTA--------------------- 99
+ K+ E F+VVM++K K + +A ++ QP+ T PTT
Sbjct: 61 EYKIDEKNFVVVMVTKPKAVTTAVPATTQPSSTPSPTTVSSSPAVAAAQAPAPTPALAPT 120
Query: 100 --PSSNSTPPQEASVPP--------------PAPTPSIPASNVTSNVTAANANSDTYGQA 143
P+S + AS P PA TP + + + ++ S+ + A
Sbjct: 121 STPASTTPASTTASSEPAPAGATQPEKPAEKPAQTPVLTSPAPADSTPGDSSRSNLFEDA 180
Query: 144 ASNLVAGNDLEQTIQQIMDMGGGTWDKETVTRALQAAYNNPERAVDYLYSGIPETAEVAV 203
S LV G E + +IM MG +++E V AL+A++NNP+RAV+YL GIP E
Sbjct: 181 TSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIPGDRESQA 237
Query: 204 PVAHFPASQAAETG 217
V P QA TG
Sbjct: 238 VVD--PPPQAVSTG 249
>gi|410950562|ref|XP_003981973.1| PREDICTED: UV excision repair protein RAD23 homolog A isoform 2
[Felis catus]
Length = 308
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 91/274 (33%), Positives = 143/274 (52%), Gaps = 46/274 (16%)
Query: 3 LTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADN 62
+T+KTL+ F+IR++P +TV +K+ IE +G+D +P Q LI+ GK+L D+ + D
Sbjct: 5 ITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDY 64
Query: 63 KVSEDGFLVVMLSKSKTLGSAGASSAQPAHTTPPTTAPSSNSTPPQEAS-VPPPAPT--- 118
++ E F+VVM++K+KT S G S P +P SS S PP AS + P+PT
Sbjct: 65 RIDEKNFVVVMVTKAKT--SPGTSV--PPEASPTAAPESSTSFPPAPASGMSQPSPTARE 120
Query: 119 ------PSIPASNVTSNVTAANANSDTYGQ--AASNLVAGNDLEQTIQQIMDMGGGTWDK 170
S+P ++ S + ++ + + AAS LV G++ E + +IM MG +++
Sbjct: 121 DKSPSEESVPTTSPESVSGSVPSSGSSGREEDAASTLVTGSEYETMLTEIMSMG---YER 177
Query: 171 ETVTRALQAAYNNPERAVDYLYSGIPETAEVAVPVAHFPASQAAETGAAGAAPVSGVPNS 230
E V AL+A+YNNP RAV+YL +GIP + E E G+ + VS P +
Sbjct: 178 ERVVAALRASYNNPHRAVEYLLTGIPGSPE-------------PEHGSVQESQVSEQPAT 224
Query: 231 SPLNMFPQETLSGAPAGGLGSLDFLRNNQQVWSL 264
A G L+FLR+ Q ++
Sbjct: 225 E--------------AAGENPLEFLRDQPQFQNM 244
>gi|351711552|gb|EHB14471.1| UV excision repair protein RAD23-like protein A [Heterocephalus
glaber]
Length = 363
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 78/207 (37%), Positives = 122/207 (58%), Gaps = 21/207 (10%)
Query: 3 LTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADN 62
+T+KTL+ F+IR++P +TV +K+ IE +G+D +P Q LI+ GK+L D+ + D
Sbjct: 5 ITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDY 64
Query: 63 KVSEDGFLVVMLSKSKTLGSAGASSAQPAHTTPPTTAPSSNS----TPPQEASVPPPA-- 116
++ E F+VVM++K+K AG S+ P + PT AP ++ +P S PPPA
Sbjct: 65 RIDEKNFVVVMVTKAK----AGQSTLAPPEVS-PTAAPEPSTPFQLSPASGMSHPPPATR 119
Query: 117 --PTPSIPASNVTS-----NVTAANANSDTYGQAASNLVAGNDLEQTIQQIMDMGGGTWD 169
+PS ++ TS ++ +S AAS LV G++ E + +IM MG ++
Sbjct: 120 EDKSPSQESATTTSPESVLGSVPSSGSSGREEDAASTLVTGSEYETMLMEIMSMG---YE 176
Query: 170 KETVTRALQAAYNNPERAVDYLYSGIP 196
+E V AL+A+YNNP RAV+YL +GIP
Sbjct: 177 RERVIAALRASYNNPHRAVEYLLTGIP 203
>gi|403302246|ref|XP_003941773.1| PREDICTED: UV excision repair protein RAD23 homolog A isoform 2
[Saimiri boliviensis boliviensis]
Length = 308
Score = 125 bits (314), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 94/275 (34%), Positives = 144/275 (52%), Gaps = 48/275 (17%)
Query: 3 LTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADN 62
+T+KTL+ F+IR++P +TV +K+ IE +G+D +P Q LI+ GK+L D+ + D
Sbjct: 5 ITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDY 64
Query: 63 KVSEDGFLVVMLSKSKTLGSAGASSAQPAHTTPPTTAP-SSNSTPPQEA---SVPPPA-- 116
++ E F+VVM++K+K + +SA P + PT AP SS S PP S PPPA
Sbjct: 65 RIDEKNFVVVMVTKTKAV---QGTSAPPEAS--PTAAPESSTSFPPAPTSGMSHPPPAAG 119
Query: 117 --PTPSIPASNVTS-----NVTAANANSDTYGQAASNLVAGNDLEQTIQQIMDMGGGTWD 169
+PS ++ TS ++ +S AAS LV G++ E + +IM MG ++
Sbjct: 120 EDKSPSEESAPTTSPESVSGSVPSSGSSGREEDAASTLVTGSEYETMLTEIMSMG---YE 176
Query: 170 KETVTRALQAAYNNPERAVDYLYSGIPETAEVAVPVAHFPASQAAETGAAGAAPVSGVPN 229
+E V AL+A+YNNP RAV+YL +GIP + E E G+ + VS P
Sbjct: 177 REQVVAALRASYNNPHRAVEYLLTGIPGSPE-------------PEHGSVQESQVSEQPA 223
Query: 230 SSPLNMFPQETLSGAPAGGLGSLDFLRNNQQVWSL 264
+ A G L+FLR+ Q ++
Sbjct: 224 TE--------------AAGENPLEFLRDQPQFQNM 244
>gi|403302244|ref|XP_003941772.1| PREDICTED: UV excision repair protein RAD23 homolog A isoform 1
[Saimiri boliviensis boliviensis]
Length = 363
Score = 125 bits (314), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 90/274 (32%), Positives = 139/274 (50%), Gaps = 46/274 (16%)
Query: 3 LTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADN 62
+T+KTL+ F+IR++P +TV +K+ IE +G+D +P Q LI+ GK+L D+ + D
Sbjct: 5 ITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDY 64
Query: 63 KVSEDGFLVVMLSKSKTLGSAGASSAQPAHTTPPTTAPSSNSTPPQEA---SVPPPA--- 116
++ E F+VVM++K+K + A P +P SS S PP S PPPA
Sbjct: 65 RIDEKNFVVVMVTKTKAVQGTSA----PPEASPTAAPESSTSFPPAPTSGMSHPPPAAGE 120
Query: 117 -PTPSIPASNVTS-----NVTAANANSDTYGQAASNLVAGNDLEQTIQQIMDMGGGTWDK 170
+PS ++ TS ++ +S AAS LV G++ E + +IM MG +++
Sbjct: 121 DKSPSEESAPTTSPESVSGSVPSSGSSGREEDAASTLVTGSEYETMLTEIMSMG---YER 177
Query: 171 ETVTRALQAAYNNPERAVDYLYSGIPETAEVAVPVAHFPASQAAETGAAGAAPVSGVPNS 230
E V AL+A+YNNP RAV+YL +GIP + E E G+ + VS P +
Sbjct: 178 EQVVAALRASYNNPHRAVEYLLTGIPGSPE-------------PEHGSVQESQVSEQPAT 224
Query: 231 SPLNMFPQETLSGAPAGGLGSLDFLRNNQQVWSL 264
A G L+FLR+ Q ++
Sbjct: 225 E--------------AAGENPLEFLRDQPQFQNM 244
>gi|164665688|gb|ABY66298.1| RAD23-like protein [Brassica napus]
Length = 357
Score = 125 bits (313), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 83/200 (41%), Positives = 109/200 (54%), Gaps = 27/200 (13%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
MK+ VK LKG+ FEI+V P D+V VKKNIE V G YP +Q+LIH GKVLKDETTLA
Sbjct: 1 MKIFVKNLKGARFEIQVSPEDSVGDVKKNIETVMGVTAYPAAEQVLIHKGKVLKDETTLA 60
Query: 61 DNKVSEDGFLVVMLSKSKTLGSAGASSAQPAHTTPPTTAPSSNSTPPQEASVPPPAPTPS 120
N VSE + V+ K + G++ A PA T A ST A P TP+
Sbjct: 61 ANNVSEKSVIGVIKKKPASTGTSTA----PASLTALVHAAHPYSTA---AETP---VTPT 110
Query: 121 IPASNVTSNVTAANANSDTYGQAASNLVAGNDLEQTIQQIMDMGGGTWDKETVTRALQAA 180
PA + A+N N ++ E IQQI++M G W +E V AL A
Sbjct: 111 EPAWD-----AASNGNYESIS------------ESNIQQILEMVRGAWSREAVAYALCLA 153
Query: 181 YNNPERAVDYLYSGIPETAE 200
Y++ +A++Y+Y GIP +E
Sbjct: 154 YDDLNKALEYIYFGIPVKSE 173
>gi|129277537|ref|NP_001076083.1| UV excision repair protein RAD23 homolog A [Bos taurus]
gi|182676545|sp|A3KMV2.1|RD23A_BOVIN RecName: Full=UV excision repair protein RAD23 homolog A
gi|126717366|gb|AAI33283.1| RAD23A protein [Bos taurus]
gi|296485920|tpg|DAA28035.1| TPA: UV excision repair protein RAD23 homolog A [Bos taurus]
Length = 362
Score = 125 bits (313), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 77/204 (37%), Positives = 120/204 (58%), Gaps = 15/204 (7%)
Query: 3 LTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADN 62
+T+KTL+ F+IR++P +TV +K+ IE +G+D +P Q LI+ GK+L D+ + D
Sbjct: 5 ITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDY 64
Query: 63 KVSEDGFLVVMLSKSKTL-GSAGASSAQPAHTTPPTTAPSSNSTPPQEASVPPPA----P 117
++ E F+VVM++K+KT G++ S A P T P ++ S S P S PPP
Sbjct: 65 RIDEKNFVVVMVTKAKTSPGTSVPSEASPTAT--PESSTSFPSAPASGMSHPPPTAREDK 122
Query: 118 TPSIPASNVTS-----NVTAANANSDTYGQAASNLVAGNDLEQTIQQIMDMGGGTWDKET 172
+PS ++ TS ++ + AAS LV G++ E + +IM MG +++E
Sbjct: 123 SPSEESAPTTSPESVSGSVPSSGSGGREEDAASTLVTGSEYETMLTEIMSMG---YERER 179
Query: 173 VTRALQAAYNNPERAVDYLYSGIP 196
V AL+A+YNNP RAV+YL +GIP
Sbjct: 180 VVAALRASYNNPHRAVEYLLTGIP 203
>gi|62898690|dbj|BAD97199.1| UV excision repair protein RAD23 homolog B variant [Homo sapiens]
Length = 409
Score = 125 bits (313), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 76/233 (32%), Positives = 117/233 (50%), Gaps = 40/233 (17%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++T+KTL+ F+I + P +TV A+K+ IE +GKD +P Q LI+ GK+L D+T L
Sbjct: 1 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALK 60
Query: 61 DNKVSEDGFLVVMLSKSKTLGSAGASSAQ------------------------------- 89
+ K+ E F+VVM++K K + + ++ Q
Sbjct: 61 EYKIDEKNFVVVMVTKPKAVSTPAPATTQQSAPASTTAVTSSTTTTVAQAPTPVPALAPT 120
Query: 90 --PAHTTPPTTAPSSNSTP----PQEASVPPPAPTPSIPASNVTSNVTAANANSDTYGQA 143
PA TP + SS P QE PA TP + T + + ++ S+ + A
Sbjct: 121 STPASITPASATASSEPAPASAAKQEKPAEKPAETPVATSPTATDSTSGDSSRSNLFEDA 180
Query: 144 ASNLVAGNDLEQTIQQIMDMGGGTWDKETVTRALQAAYNNPERAVDYLYSGIP 196
S LV G E + +IM MG +++E V AL+A++NNP+R V+YL GIP
Sbjct: 181 TSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRGVEYLLMGIP 230
>gi|255636258|gb|ACU18469.1| unknown [Glycine max]
Length = 160
Score = 125 bits (313), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 64/114 (56%), Positives = 81/114 (71%), Gaps = 7/114 (6%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
MK+ VKTLKG+HFEI V P DTV VKKNIE VQG D YP QQ+LIH GKVL+D +TL
Sbjct: 1 MKVFVKTLKGTHFEIEVTPQDTVSEVKKNIETVQGADVYPAAQQMLIHQGKVLRDASTLE 60
Query: 61 DNKVSEDGFLVVMLSKSKTLGSAGASSAQPAHTTPPTTAPSSNSTPPQEASVPP 114
+NKV E+ F+V+MLSKSK+ G++++ T P T AP +++ P AS PP
Sbjct: 61 ENKVVENTFIVIMLSKSKSPSGEGSTTS----TAPSTKAPQTSTVP---ASTPP 107
>gi|363744612|ref|XP_429175.3| PREDICTED: UV excision repair protein RAD23 homolog B [Gallus
gallus]
Length = 403
Score = 125 bits (313), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 96/298 (32%), Positives = 146/298 (48%), Gaps = 52/298 (17%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++T+KTL+ F I + P +TV A+K+ IE +GKD +P Q LI+ GK+L D+T L
Sbjct: 1 MQITLKTLQQQTFRIDIDPEETVKALKEKIESERGKDAFPVAGQKLIYAGKILNDDTALK 60
Query: 61 DNKVSEDGFLVVMLSKSKTLGSAGASSAQPAHTT---PPTTAPSSN-------------- 103
+ K+ E F+VVM++K K +A ++ Q TT T AP+
Sbjct: 61 EYKIDEKNFVVVMVTKPKAATAATTATQQTNSTTGVSVTTAAPTPVSAPTPAAAPVPAPD 120
Query: 104 ----------------STPPQEASVPPPAPTPSIPASNVTSNVTAANANSDTYGQAASNL 147
STP +E PA P+ + + + T + S+ + A S L
Sbjct: 121 PTTPAPAAVACESEPVSTPKEEKPAEKPADAPTAVSLSSNESTTGDTSRSNLFEDAISAL 180
Query: 148 VAGNDLEQTIQQIMDMGGGTWDKETVTRALQAAYNNPERAVDYLYSGIP-ETAEVAVPVA 206
V G E + +IM MG +++E V AL+A++NNP+RAV+YL GIP + VA P
Sbjct: 181 VTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIPGDNQAVAEP-- 235
Query: 207 HFPASQAAETGAAGAAPVSGVPNSSPLNMFPQETLSGAPAGGLGSLDFLRNNQQVWSL 264
+QAA TG + ++ V+ + P +L G P L+FLRN Q +
Sbjct: 236 ----TQAASTGTSQSSAVAAAVATIPTTA---TSLGGHP------LEFLRNQPQFQQM 280
>gi|332222429|ref|XP_003260372.1| PREDICTED: UV excision repair protein RAD23 homolog B isoform 1
[Nomascus leucogenys]
Length = 409
Score = 124 bits (312), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 86/258 (33%), Positives = 127/258 (49%), Gaps = 49/258 (18%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++T+KTL+ F I + P +TV A+K+ IE +GKD +P Q LI+ GK+L D+T L
Sbjct: 1 MQVTLKTLQQLTFWIDIDPDETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALK 60
Query: 61 DNKVSEDGFLVVMLSKSKTLGSAGASSAQ------------------------------- 89
+ K+ E F+VVM++K K + + ++ Q
Sbjct: 61 EYKIDEKNFVVVMVTKPKAVSTPAPATTQQSAPASTTAVTSSTATTVAQAPTPVPALAPT 120
Query: 90 --PAHTTPPTTAPSSNSTP----PQEASVPPPAPTPSIPASNVTSNVTAANANSDTYGQA 143
PA TP + SS P QE PA TP + T + + ++ S+ + A
Sbjct: 121 STPASITPASVTASSEPAPASATKQEKPAEKPAETPVATSPTATDSTSGDSSRSNLFEDA 180
Query: 144 ASNLVAGNDLEQTIQQIMDMGGGTWDKETVTRALQAAYNNPERAVDYLYSGIP---ETAE 200
S LV G E + +IM MG +++E V AL+A++NNP+RAV+YL GIP E+
Sbjct: 181 TSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIPGDRESQA 237
Query: 201 VAVPVAHFPASQAAETGA 218
V P QAA TGA
Sbjct: 238 VVDP------PQAASTGA 249
>gi|57094213|ref|XP_538778.1| PREDICTED: UV excision repair protein RAD23 homolog B isoform 2
[Canis lupus familiaris]
Length = 406
Score = 124 bits (312), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 78/231 (33%), Positives = 119/231 (51%), Gaps = 38/231 (16%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M +T+KTL+ F+I + P +TV A+K+ IE +GKD +P Q LI+ GK+L D+T L
Sbjct: 1 MLVTLKTLQQQTFKIDIDPDETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALK 60
Query: 61 DNKVSEDGFLVVMLSKSKTLGSAGASSAQ------------------------------- 89
+ K+ E F+VVM++K K + + ++ Q
Sbjct: 61 EYKIDEKNFVVVMVTKPKAVTTPAPATTQQSNPATTTTVSSSTAPTVVQAPAPPVLAPTP 120
Query: 90 -PAHTTP-PTTA--PSSNSTPPQEASVPPPAPTPSIPASNVTSNVTAANANSDTYGQAAS 145
PA TP P T+ P+ S QE PA TP + T + + ++ S+ + A S
Sbjct: 121 SPASVTPAPATSSEPAPTSVTQQEKPAEKPAETPVATSPTATDSTSGDSSRSNLFEDATS 180
Query: 146 NLVAGNDLEQTIQQIMDMGGGTWDKETVTRALQAAYNNPERAVDYLYSGIP 196
LV G E + +IM MG +++E V AL+A++NNP+RAV+YL GIP
Sbjct: 181 ALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIP 228
>gi|348535033|ref|XP_003455006.1| PREDICTED: UV excision repair protein RAD23 homolog B-like
[Oreochromis niloticus]
Length = 373
Score = 124 bits (312), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 96/279 (34%), Positives = 145/279 (51%), Gaps = 37/279 (13%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M +T+KTL+ F+I + +TV +K+ IE +GK+ + Q LI+ GK+L D++ L
Sbjct: 1 MLITLKTLQQQTFKIDIDEEETVRTLKERIEQEKGKEIFSVAGQKLIYAGKILSDDSPLK 60
Query: 61 DNKVSEDGFLVVMLSKSKTLGSAGA-SSAQPAHTTPPTTAP------SSNSTPPQEASVP 113
+ K+ E F+VVM++K K +A S+A PA P TTAP SS S P E S
Sbjct: 61 EYKIDEKNFVVVMVTKPKKAPTASQPSTAAPA---PSTTAPAAQSDSSSTSDKPAEQSST 117
Query: 114 PPAPTPSIPASNVTSNVTAANAN--SDTYGQAASNLVAGNDLEQTIQQIMDMGGGTWDKE 171
P S P++ S+ + + ++ +A SNLV G+ + + ++M MG +++E
Sbjct: 118 DDKPEESQPSTTEASSTSVGRSGDAANLISEAVSNLVTGSSYDAMVNEMMLMG---YERE 174
Query: 172 TVTRALQAAYNNPERAVDYLYSGIPETAEVAVPVAHFPASQAAETGA-AGAAPVSGVP-- 228
V AL+A++NNP+RA++YL +GIP +Q +G A A P SG P
Sbjct: 175 QVVAALRASFNNPDRAMEYLLTGIPSR------------NQGNASGRDAVAPPASGTPAV 222
Query: 229 ---NSSPLNMFPQETLSGAPAGGLGSLDFLRNNQQVWSL 264
N+S P T S AGG L FLRN Q +
Sbjct: 223 PAGNASA----PANTRSSPSAGGGNPLSFLRNQPQFQVM 257
>gi|126323174|ref|XP_001366912.1| PREDICTED: UV excision repair protein RAD23 homolog A-like
[Monodelphis domestica]
Length = 366
Score = 124 bits (312), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 91/283 (32%), Positives = 137/283 (48%), Gaps = 61/283 (21%)
Query: 3 LTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADN 62
+T+KTL+ F+IR++P +TV +K+ IE +G+D +P Q LI+ GK+L D+ + D
Sbjct: 5 VTLKTLQQQTFKIRMEPGETVKVLKEKIEAEKGRDAFPVSGQKLIYAGKILSDDVPIRDY 64
Query: 63 KVSEDGFLVVMLSKSKTLGSAGASSAQPAHTTPPT-TAPSSNSTPPQEAS---------- 111
K+ E F+VVM++K+K A PA + PP +AP+S +T
Sbjct: 65 KIDEKNFVVVMVTKAK---------AGPATSVPPEPSAPASANTLEPSTPTPPAPTIVAM 115
Query: 112 -VPPPAPTPSIPASNVTSNVTAANANSDTY---------GQAASNLVAGNDLEQTIQQIM 161
+PPPAP A+ ++ T A + AAS LV G++ E + +IM
Sbjct: 116 PLPPPAPNEEKKATEESAAGTLPEARPGSLPSSGSSGQEDDAASTLVTGSEYETMLTEIM 175
Query: 162 DMGGGTWDKETVTRALQAAYNNPERAVDYLYSGIPETAEVAVPVAHFPASQAAETGAAGA 221
MG +++E V AL+A+YNNP RAV+YL GIP + E P S + A
Sbjct: 176 SMG---YERERVVAALRASYNNPHRAVEYLLMGIPGSPE--------PESGPVQESQAPE 224
Query: 222 APVSGVPNSSPLNMFPQETLSGAPAGGLGSLDFLRNNQQVWSL 264
P AP GG L+FLR+ Q ++
Sbjct: 225 QP--------------------APEGGENPLEFLRDQPQFQNM 247
>gi|402904433|ref|XP_003915050.1| PREDICTED: UV excision repair protein RAD23 homolog A isoform 2
[Papio anubis]
Length = 308
Score = 124 bits (312), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 90/274 (32%), Positives = 140/274 (51%), Gaps = 46/274 (16%)
Query: 3 LTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADN 62
+T+KTL+ F+IR++P +TV +K+ IE +G+D +P Q LI+ GK+L D+ + D
Sbjct: 5 ITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDY 64
Query: 63 KVSEDGFLVVMLSKSKTLGSAGASSAQPAHTTPPTTAPSSNSTPPQEA---SVPPPA--- 116
++ E F+VVM++K+K AG ++ P +P SS S PP S P PA
Sbjct: 65 RIDEKNFVVVMVTKTK----AGQGTSAPPEASPTAAPESSTSFPPAPTSGMSHPQPAARE 120
Query: 117 -PTPSIPASNVTS-----NVTAANANSDTYGQAASNLVAGNDLEQTIQQIMDMGGGTWDK 170
+PS ++ TS ++ +S AAS LV G++ E + +IM MG +++
Sbjct: 121 DKSPSEESAPTTSPESVSGSVPSSGSSGREEDAASTLVTGSEYETMLTEIMSMG---YER 177
Query: 171 ETVTRALQAAYNNPERAVDYLYSGIPETAEVAVPVAHFPASQAAETGAAGAAPVSGVPNS 230
E V AL+A+YNNP RAV+YL +GIP + E E G+ + VS P +
Sbjct: 178 ERVVAALRASYNNPHRAVEYLLTGIPGSPE-------------PEHGSVQESQVSEQPAT 224
Query: 231 SPLNMFPQETLSGAPAGGLGSLDFLRNNQQVWSL 264
A G L+FLR+ Q ++
Sbjct: 225 E--------------AAGENPLEFLRDQPQFQNM 244
>gi|402904431|ref|XP_003915049.1| PREDICTED: UV excision repair protein RAD23 homolog A isoform 1
[Papio anubis]
gi|355703206|gb|EHH29697.1| UV excision repair protein RAD23-like protein A [Macaca mulatta]
gi|383420439|gb|AFH33433.1| UV excision repair protein RAD23 homolog A [Macaca mulatta]
Length = 363
Score = 124 bits (311), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 90/274 (32%), Positives = 140/274 (51%), Gaps = 46/274 (16%)
Query: 3 LTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADN 62
+T+KTL+ F+IR++P +TV +K+ IE +G+D +P Q LI+ GK+L D+ + D
Sbjct: 5 ITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDY 64
Query: 63 KVSEDGFLVVMLSKSKTLGSAGASSAQPAHTTPPTTAPSSNSTPPQEA---SVPPPA--- 116
++ E F+VVM++K+K AG ++ P +P SS S PP S P PA
Sbjct: 65 RIDEKNFVVVMVTKTK----AGQGTSAPPEASPTAAPESSTSFPPAPTSGMSHPQPAARE 120
Query: 117 -PTPSIPASNVTS-----NVTAANANSDTYGQAASNLVAGNDLEQTIQQIMDMGGGTWDK 170
+PS ++ TS ++ +S AAS LV G++ E + +IM MG +++
Sbjct: 121 DKSPSEESAPTTSPESVSGSVPSSGSSGREEDAASTLVTGSEYETMLTEIMSMG---YER 177
Query: 171 ETVTRALQAAYNNPERAVDYLYSGIPETAEVAVPVAHFPASQAAETGAAGAAPVSGVPNS 230
E V AL+A+YNNP RAV+YL +GIP + E E G+ + VS P +
Sbjct: 178 ERVVAALRASYNNPHRAVEYLLTGIPGSPE-------------PEHGSVQESQVSEQPAT 224
Query: 231 SPLNMFPQETLSGAPAGGLGSLDFLRNNQQVWSL 264
A G L+FLR+ Q ++
Sbjct: 225 E--------------AAGENPLEFLRDQPQFQNM 244
>gi|70778952|ref|NP_001020446.1| UV excision repair protein RAD23 homolog B [Rattus norvegicus]
gi|123789085|sp|Q4KMA2.1|RD23B_RAT RecName: Full=UV excision repair protein RAD23 homolog B
gi|68534740|gb|AAH98674.1| RAD23 homolog B (S. cerevisiae) [Rattus norvegicus]
gi|149037170|gb|EDL91701.1| RAD23b homolog (S. cerevisiae), isoform CRA_b [Rattus norvegicus]
Length = 415
Score = 124 bits (311), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 86/254 (33%), Positives = 126/254 (49%), Gaps = 42/254 (16%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++T+KTL+ F+I + P +TV A+K+ IE +GKD +P Q LI+ GK+L D+T L
Sbjct: 1 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILSDDTALK 60
Query: 61 DNKVSEDGFLVVMLSKSKTLGSA---------------------------------GASS 87
+ K+ E F+VVM++K K + SA A +
Sbjct: 61 EYKIDEKNFVVVMVTKPKAVTSAVPATTQQSSSPSTTTVSSSPAAAVAQAPAPTPALAPT 120
Query: 88 AQPAHTTPPTTAPSSNSTP----PQEASVPPPAPTPSIPASNVTSNVTAANANSDTYGQA 143
+ PA TTP +T SS P E PA TP + + + ++ S+ + A
Sbjct: 121 STPASTTPASTTASSEPAPTGATQPEKPAEKPAQTPVLTSPAPADSTPGDSSRSNLFEDA 180
Query: 144 ASNLVAGNDLEQTIQQIMDMGGGTWDKETVTRALQAAYNNPERAVDYLYSGIPETAEVAV 203
S LV G E + +IM MG +++E V AL+A++NNP+RAV+YL GIP E
Sbjct: 181 TSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIPGDRESQA 237
Query: 204 PVAHFPASQAAETG 217
V P QA TG
Sbjct: 238 VVD--PPPQAVSTG 249
>gi|383860341|ref|XP_003705649.1| PREDICTED: UV excision repair protein RAD23 homolog B-like
[Megachile rotundata]
Length = 365
Score = 124 bits (310), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 75/201 (37%), Positives = 113/201 (56%), Gaps = 18/201 (8%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M +T+K L+ F + + PS TV +K+ IE +G +P Q LI+ GK+L D+ LA
Sbjct: 1 MIITLKNLQQQTFTVEIDPSQTVKDLKQKIETQKG---FPAEHQKLIYAGKILTDDHPLA 57
Query: 61 DNKVSEDGFLVVMLSKSKTLGSAGASSAQPAHTTPPTTAPSSNSTPPQEASVPPPAPTPS 120
+ + E F+VVM++K KT G ++A+ HT T SS ++ SVP P+ PS
Sbjct: 58 EYNIDEKKFIVVMVTKLKT--GNGHTAAEEDHTNTETKEESSTTS-----SVPEPSSNPS 110
Query: 121 I-----PASNVTSNVTAANANSDTYGQAASNLVAGNDLEQTIQQIMDMGGGTWDKETVTR 175
+ P S A+ A GQA S L+ G + + IMDMG +++E V +
Sbjct: 111 VQGASNPVSTAQEQSAASTATECAGGQAESALLMGENYNTMVNNIMDMG---YEREQVEQ 167
Query: 176 ALQAAYNNPERAVDYLYSGIP 196
AL+A++NNP+RAV+YL +GIP
Sbjct: 168 ALRASFNNPDRAVEYLVTGIP 188
>gi|358346473|ref|XP_003637292.1| RAD23 protein [Medicago truncatula]
gi|355503227|gb|AES84430.1| RAD23 protein [Medicago truncatula]
Length = 213
Score = 124 bits (310), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 73/102 (71%), Positives = 81/102 (79%), Gaps = 2/102 (1%)
Query: 163 MGGGTWDKETVTRALQAAYNNPERAVDYLYSGIPETAEVAVPVAHFPASQAAETGAAGAA 222
MGGG+WD++TV RAL+AA+NNPERAVDYLYSGIPE AEVAVP A +P S ETG
Sbjct: 1 MGGGSWDRDTVNRALRAAFNNPERAVDYLYSGIPEAAEVAVPAAQYP-SNPTETGGVTTG 59
Query: 223 PVSGVPNSSPLNMFPQETLSGAPAGGLGSLDFLRNNQQVWSL 264
V GVPNSSPLNMFPQET+SGA AG GSLDFLRNN Q +L
Sbjct: 60 VVPGVPNSSPLNMFPQETISGAGAGA-GSLDFLRNNPQFQAL 100
>gi|426228902|ref|XP_004008534.1| PREDICTED: UV excision repair protein RAD23 homolog A isoform 1
[Ovis aries]
Length = 365
Score = 124 bits (310), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 75/207 (36%), Positives = 120/207 (57%), Gaps = 18/207 (8%)
Query: 3 LTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADN 62
+T+KTL+ F+IR++P +TV +K+ IE +G+D +P Q LI+ GK+L D+ + D
Sbjct: 5 ITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDY 64
Query: 63 KVSEDGFLVVMLSKSKTL-GSAGASSAQPAHTTPPTTAPSSNSTPPQEASVPPP------ 115
++ E F+VVM++K+KT G++ S A P T P ++ S S P S PPP
Sbjct: 65 RIDEKNFVVVMVTKAKTSPGTSVPSEASPTAT--PESSTSFPSAPASGMSHPPPTAREDK 122
Query: 116 ------APTPSIPASNVTSNVTAANANSDTYGQAASNLVAGNDLEQTIQQIMDMGGGTWD 169
APT S + + + + ++ + AA + V G++ E + +IM MG ++
Sbjct: 123 SPSEESAPTTSPESVSGSVPSSGSSGREEDVAFAAPSTVTGSEYETMLTEIMSMG---YE 179
Query: 170 KETVTRALQAAYNNPERAVDYLYSGIP 196
+E V AL+A+YNNP RAV+YL +GIP
Sbjct: 180 RERVVAALRASYNNPHRAVEYLLTGIP 206
>gi|301762141|ref|XP_002916489.1| PREDICTED: UV excision repair protein RAD23 homolog B-like
[Ailuropoda melanoleuca]
Length = 408
Score = 124 bits (310), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 80/235 (34%), Positives = 121/235 (51%), Gaps = 44/235 (18%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M +T+KTL+ F+I + P +TV A+K+ IE +GKD +P Q LI+ GK+L D+T L
Sbjct: 1 MLVTLKTLQQQTFKIDIDPDETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALK 60
Query: 61 DNKVSEDGFLVVMLSKSKTLGSAGASSAQ------------------------------- 89
+ K+ E F+VVM++K K + + ++ Q
Sbjct: 61 EYKIDEKNFVVVMVTKPKAVTTPAPATTQQSNPATTTTVSSSTAPAVAQAPAPAPTLAPT 120
Query: 90 --PAHTTP-PTTA-----PSSNSTPPQEASVPPPAPTPSIPASNVTSNVTAANANSDTYG 141
PA TP PTTA P+S + P E PA TP + T + + ++ S+ +
Sbjct: 121 PSPASVTPAPTTASSEPAPASATQP--EKPAEKPAETPVATSPTATDSTSGDSSRSNLFE 178
Query: 142 QAASNLVAGNDLEQTIQQIMDMGGGTWDKETVTRALQAAYNNPERAVDYLYSGIP 196
A S LV G E + +IM MG +++E V AL+A++NNP+RAV+YL GIP
Sbjct: 179 DATSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIP 230
>gi|417400397|gb|JAA47148.1| Putative nucleotide excision repair factor nef2 rad23 component
[Desmodus rotundus]
Length = 408
Score = 124 bits (310), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 102/301 (33%), Positives = 145/301 (48%), Gaps = 51/301 (16%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++T+KTL+ F+I + P +TV A+K+ IE +GKD +P Q LI+ GK+L D+T L
Sbjct: 1 MQVTLKTLQQQTFKIDIDPDETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALK 60
Query: 61 DNKVSEDGFLVVMLSKSK---------------------------------TLGSAGASS 87
+ K+ E F+VVM++K K T A A +
Sbjct: 61 EYKIDEKNFVVVMVTKPKAVTTPAPTTTQQSNPATTTTISSSTAPAVAQVPTPTPALAPT 120
Query: 88 AQPAHTTPPTTAPSSNSTP----PQEASVPPPAPTPSIPASNVTSNVTAANANSDTYGQA 143
PA TP +T SS S P QE PA TP + T + + ++ S+ + A
Sbjct: 121 PTPASVTPASTTVSSESAPASATKQENPAEKPAETPVATSPTSTDSTSGDSSRSNLFEDA 180
Query: 144 ASNLVAGNDLEQTIQQIMDMGGGTWDKETVTRALQAAYNNPERAVDYLYSGIPETAEVAV 203
S LV G E + +IM MG +++E V AL+A++NNP+RAV+YL GIP E
Sbjct: 181 TSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIPGDRESQA 237
Query: 204 PVAHFPASQAAETGAAGAAPVSGVPNSSPLNMFPQETLSGAPAGGLGSLDFLRNNQQVWS 263
V P AA TG AP S V ++ T S +GG L+FLRN Q
Sbjct: 238 VVDPPP---AATTG----APQSSVAAAAATTTATTTTTS---SGG-HPLEFLRNQPQFQQ 286
Query: 264 L 264
+
Sbjct: 287 M 287
>gi|380815238|gb|AFE79493.1| UV excision repair protein RAD23 homolog A [Macaca mulatta]
gi|384948564|gb|AFI37887.1| UV excision repair protein RAD23 homolog A [Macaca mulatta]
Length = 362
Score = 123 bits (309), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 77/206 (37%), Positives = 119/206 (57%), Gaps = 19/206 (9%)
Query: 3 LTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADN 62
+T+KTL+ F+IR++P +TV +K+ IE +G+D +P Q LI+ GK+L D+ + D
Sbjct: 5 ITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDY 64
Query: 63 KVSEDGFLVVMLSKSKTLGSAGASSAQPAHTTPPTTAPSSNSTPPQEA---SVPPPA--- 116
++ E F+VVM++K+K AG ++ P +P SS S PP S P PA
Sbjct: 65 RIDEKNFVVVMVTKTK----AGQGTSAPPEASPTAAPESSTSFPPAPTSGMSHPQPAARE 120
Query: 117 -PTPSIPASNVTS-----NVTAANANSDTYGQAASNLVAGNDLEQTIQQIMDMGGGTWDK 170
+PS ++ TS ++ +S AAS LV G++ E + +IM MG +++
Sbjct: 121 DKSPSEESAPTTSPESVSGSVPSSGSSGREEDAASTLVTGSEYETMLTEIMSMG---YER 177
Query: 171 ETVTRALQAAYNNPERAVDYLYSGIP 196
E V AL+A+YNNP RAV+YL +GIP
Sbjct: 178 ERVVAALRASYNNPHRAVEYLLTGIP 203
>gi|392883134|gb|AFM90399.1| UV excision repair protein RAD23-like B protein [Callorhinchus
milii]
Length = 378
Score = 123 bits (309), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 92/293 (31%), Positives = 138/293 (47%), Gaps = 56/293 (19%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++TVKTL+ F I+++P V A+K+ IE +GKD +P Q LI+ GK+L DET +
Sbjct: 1 MRITVKTLQQQSFHIQIEPELPVKALKEKIETEKGKDAFPVAGQKLIYAGKILDDETPII 60
Query: 61 DNKVSEDGFLVVMLSKSKTLGSAGASSAQPAHTTPPTTAPSSNSTPPQEASVPPPAPTPS 120
+ K+ E+ F+VVM++K K+ S A++ QPA + P A ++ + PP + P A T +
Sbjct: 61 EYKIDEEKFVVVMITKPKSSPSVQAAATQPATPSTPQPASTTPTVPPASS---PTATTET 117
Query: 121 IPASNVTSNVTAANA----------------------------NSDTYGQAASNLVAGND 152
+P +N ++ + A S + A S LV G
Sbjct: 118 VP-TNTSNELNTAEKPTEKSDETSTSTSTSPSASTIRTSGGAQGSSLFDVATSALVTGQQ 176
Query: 153 LEQTIQQIMDMGGGTWDKETVTRALQAAYNNPERAVDYLYSGIP-ETAEVAVPVAHFPAS 211
E + +I MG + +E V AL+A++NNP+RAV+YL GIP E A +V
Sbjct: 177 YETMVTEITSMG---YSREQVVAALKASFNNPDRAVEYLLMGIPGERARSSVNNPQQTTG 233
Query: 212 QAAETGAAGAAPVSGVPNSSPLNMFPQETLSGAPAGGLGSLDFLRNNQQVWSL 264
A A AAP AP L+FLRN Q +
Sbjct: 234 TACTGSAQPAAP--------------------APTSRENPLEFLRNQPQFHQM 266
>gi|392884316|gb|AFM90990.1| UV excision repair protein RAD23-like protein B isoform 5
[Callorhinchus milii]
Length = 378
Score = 123 bits (309), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 92/293 (31%), Positives = 138/293 (47%), Gaps = 56/293 (19%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++TVKTL+ F I+++P V A+K+ IE +GKD +P Q LI+ GK+L DET +
Sbjct: 1 MRITVKTLQQQSFHIQIEPELPVKALKEKIETEKGKDAFPVAGQKLIYAGKILDDETPII 60
Query: 61 DNKVSEDGFLVVMLSKSKTLGSAGASSAQPAHTTPPTTAPSSNSTPPQEASVPPPAPTPS 120
+ K+ E+ F+VVM++K K+ S A++ QPA + P A ++ + PP + P A T +
Sbjct: 61 EYKIDEEKFVVVMITKPKSSPSVQAAATQPATPSTPQPASTTPTVPPASS---PTATTET 117
Query: 121 IPASNVTSNVTAANA----------------------------NSDTYGQAASNLVAGND 152
+P +N ++ + A S + A S LV G
Sbjct: 118 VP-TNTSNELNTAEKPTEKSDETSTSTSTSPSASTIRTSGGAQGSSLFDVATSALVTGQQ 176
Query: 153 LEQTIQQIMDMGGGTWDKETVTRALQAAYNNPERAVDYLYSGIP-ETAEVAVPVAHFPAS 211
E + +I MG + +E V AL+A++NNP+RAV+YL GIP E A +V
Sbjct: 177 YETMVTEITSMG---YSREQVVAALKASFNNPDRAVEYLLMGIPGERARSSVNNPQQTTG 233
Query: 212 QAAETGAAGAAPVSGVPNSSPLNMFPQETLSGAPAGGLGSLDFLRNNQQVWSL 264
A A AAP AP L+FLRN Q +
Sbjct: 234 TACTGSAQPAAP--------------------APTSRENPLEFLRNQPQFHQM 266
>gi|395850797|ref|XP_003797962.1| PREDICTED: UV excision repair protein RAD23 homolog A [Otolemur
garnettii]
Length = 362
Score = 123 bits (308), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 79/208 (37%), Positives = 120/208 (57%), Gaps = 23/208 (11%)
Query: 3 LTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADN 62
+T+KTL+ F+IR++P +TV +K+ IE +G+D +P Q LI+ GK+L D+ + D
Sbjct: 5 ITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDY 64
Query: 63 KVSEDGFLVVMLSKSKTLGSAGASSAQPAHTTPPTTAPSSNST-----PPQEASVPPPA- 116
++ E F+VVM++K+K AG ++ P +P TA S ST P S PPPA
Sbjct: 65 RIDEKNFVVVMVTKAK----AGQGTSAPLEASP--TAASETSTTFLPAPASGMSHPPPAA 118
Query: 117 ---PTPSIPASNVTS-----NVTAANANSDTYGQAASNLVAGNDLEQTIQQIMDMGGGTW 168
+PS + TS ++ +S AAS LV G++ E + +IM MG +
Sbjct: 119 REDKSPSEESVPTTSPESVSGSVPSSGSSGREEDAASTLVTGSEYETMLTEIMSMG---Y 175
Query: 169 DKETVTRALQAAYNNPERAVDYLYSGIP 196
++E V AL+A+YNNP RAV+YL +GIP
Sbjct: 176 EREQVVAALRASYNNPHRAVEYLLTGIP 203
>gi|297276258|ref|XP_001110103.2| PREDICTED: UV excision repair protein RAD23 homolog A [Macaca
mulatta]
Length = 276
Score = 123 bits (308), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 78/210 (37%), Positives = 121/210 (57%), Gaps = 19/210 (9%)
Query: 3 LTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADN 62
+T+KTL+ F+IR++P +TV +K+ IE +G+D +P Q LI+ GK+L D+ + D
Sbjct: 5 ITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDY 64
Query: 63 KVSEDGFLVVMLSKSKTLGSAGASSAQPAHTTPPTTAPSSNSTPPQEA---SVPPPA--- 116
++ E F+VVM++K+K AG ++ P +P SS S PP S P PA
Sbjct: 65 RIDEKNFVVVMVTKTK----AGQGTSAPPEASPTAAPESSTSFPPAPTSGMSHPQPAARE 120
Query: 117 -PTPSIPASNVTS-----NVTAANANSDTYGQAASNLVAGNDLEQTIQQIMDMGGGTWDK 170
+PS ++ TS ++ +S AAS LV G++ E + +IM MG +++
Sbjct: 121 DKSPSEESAPTTSPESVSGSVPSSGSSGREEDAASTLVTGSEYETMLTEIMSMG---YER 177
Query: 171 ETVTRALQAAYNNPERAVDYLYSGIPETAE 200
E V AL+A+YNNP RAV+YL +GIP + E
Sbjct: 178 ERVVAALRASYNNPHRAVEYLLTGIPGSPE 207
>gi|392884282|gb|AFM90973.1| UV excision repair protein RAD23-like protein B isoform 5
[Callorhinchus milii]
Length = 378
Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 93/292 (31%), Positives = 136/292 (46%), Gaps = 54/292 (18%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++TVKTL+ F I+++P V A+K+ IE +GKD +P Q LI+ GK+L DET +
Sbjct: 1 MRITVKTLQQQSFHIQIEPELPVKALKEKIETEKGKDAFPVAGQKLIYAGKILDDETPII 60
Query: 61 DNKVSEDGFLVVMLSKSKTLGSAGASSAQPAHTTPPTTAPSSNSTPPQEASVPPPAPTPS 120
+ K+ E+ F+VVM++K K+ S A++ QPA + P A ++ + PP + P A T +
Sbjct: 61 EYKIDEEKFVVVMITKPKSSPSVQAAATQPATPSTPQPASTTPTVPPASS---PTATTET 117
Query: 121 IP--ASNVTSNVTAANANSDT-------------------------YGQAASNLVAGNDL 153
+P SN + SD + A S LV G
Sbjct: 118 VPTNTSNELNTAEKPTEKSDETSTSTSTSPSASTIRTSGGAQGSGLFDVATSALVTGQQY 177
Query: 154 EQTIQQIMDMGGGTWDKETVTRALQAAYNNPERAVDYLYSGIP-ETAEVAVPVAHFPASQ 212
E + +I MG + +E V AL+A++NNP+RAV+YL GIP E A +V
Sbjct: 178 ETMVTEITSMG---YSREQVVAALKASFNNPDRAVEYLLMGIPGERARSSVNNPQQTTGT 234
Query: 213 AAETGAAGAAPVSGVPNSSPLNMFPQETLSGAPAGGLGSLDFLRNNQQVWSL 264
A A AAP AP L+FLRN Q +
Sbjct: 235 ACTGSAQPAAP--------------------APTSRENPLEFLRNQPQFHQM 266
>gi|395823983|ref|XP_003785253.1| PREDICTED: UV excision repair protein RAD23 homolog B-like
[Otolemur garnettii]
Length = 413
Score = 122 bits (307), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 95/306 (31%), Positives = 145/306 (47%), Gaps = 59/306 (19%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++T+KTL+ F+I + P +TV A+K+ IE +GKD +P Q LI+ GK+L D+T L
Sbjct: 1 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALK 60
Query: 61 DNKVSEDGFLVVMLSKSKTLGSAGAS---------------------------------- 86
+ K+ E F+VVM++K K + + +
Sbjct: 61 EYKIDEKNFVVVMVTKPKAVSTPAPAAAAAQQSNPVTTTPVTSSTATTVAQAPTPAPAPA 120
Query: 87 ----SAQPAH-TTPPTTAPSSNSTPPQEASVPPPAPTPSIPASNVTSNVTAANANSDTYG 141
S PA TT P AP+S + QE PA TP + T + + ++ S+ +
Sbjct: 121 STPVSVTPASTTTSPEPAPASATK--QEKPAEKPAETPVATSPTPTDSTSGDSSRSNLFE 178
Query: 142 QAASNLVAGNDLEQTIQQIMDMGGGTWDKETVTRALQAAYNNPERAVDYLYSGIP---ET 198
A S LV G E + +IM MG +++E V AL+A++NNP+RAV+YL GIP E+
Sbjct: 179 DATSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIPGDRES 235
Query: 199 AEVAVPVAHFPASQAAETGAAGAAPVSGVPNSSPLNMFPQETLSGAPAGGLGSLDFLRNN 258
V P QAA TG ++ V+ ++ + G P L+FLRN
Sbjct: 236 QAVVDP------PQAAGTGTPQSSAVAAAAATTTATTTTTTSSGGHP------LEFLRNQ 283
Query: 259 QQVWSL 264
Q +
Sbjct: 284 PQFQQM 289
>gi|410903534|ref|XP_003965248.1| PREDICTED: UV excision repair protein RAD23 homolog B-like
[Takifugu rubripes]
Length = 384
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 93/275 (33%), Positives = 139/275 (50%), Gaps = 26/275 (9%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M +T+KTL+ F+I + +TV +K+ IE +GKDN+P LI+ G +L D L
Sbjct: 1 MLITLKTLQQQTFKIEIDEEETVKTLKERIEAEKGKDNFPVSGLKLIYAGVILNDVKPLK 60
Query: 61 DNKVSEDGFLVVMLSKSKTLGSAGASSAQPAHTTPPTTAP------SSNSTPP-----QE 109
+ +S+ F+VVM +K KT + A+ PA + P T AP S+ S P +E
Sbjct: 61 EYNISDKNFVVVMATKPKT--APAATQPSPAASGPCTAAPPAPGACSTVSEVPTQQTTKE 118
Query: 110 ASVPPPAPTPSIPASNVTSNVTAANANSDTYGQAASNLVAGNDLEQTIQQIMDMGGGTWD 169
+ P+ + PAS + N++ +A SNLV G E + +IM MG +D
Sbjct: 119 DNAEEKPPSTAAPASTPEGGGSEVPTNANLIDEAVSNLVTGPSYESMVNEIMLMG---YD 175
Query: 170 KETVTRALQAAYNNPERAVDYLYSGIPETAEVAVPVAHFPASQAAETGAAGAAPVSGVPN 229
+E V AL+A++NNP+RAV+YL +GIP + A ++A G A AAP+ G+
Sbjct: 176 REQVVVALRASFNNPDRAVEYLLTGIPGRDQGQ---AAGTTAEATSAGVAPAAPLGGL-- 230
Query: 230 SSPLNMFPQETLSGAPAGGLGSLDFLRNNQQVWSL 264
P T S A + L FLRN Q +
Sbjct: 231 -----RAPTGTGSSTGAERVNPLSFLRNQPQFQQM 260
>gi|417410223|gb|JAA51588.1| Putative nucleotide excision repair factor nef2 rad23 component,
partial [Desmodus rotundus]
Length = 380
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 87/277 (31%), Positives = 139/277 (50%), Gaps = 52/277 (18%)
Query: 3 LTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADN 62
+T+KTL+ F+IR++P +TV +K+ IE +G+D +P Q LI+ GK+L D+ + D
Sbjct: 22 ITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDY 81
Query: 63 KVSEDGFLVVMLSKSK-----TLGSAGASSAQPAHTTPPTTAPSS----------NSTPP 107
++ E F+VVM++K+K ++ +S+A P +T +AP+S P
Sbjct: 82 RIDEKNFVVVMVTKAKNSPGTSVPPEASSTAAPESSTTSPSAPASGMSHPPPTIREDKSP 141
Query: 108 QEASVPPPAPTPSIPASNVTSNVTAANANSDTYGQAASNLVAGNDLEQTIQQIMDMGGGT 167
E SVP +P S ++ +S AAS LV G++ E + +IM MG
Sbjct: 142 SEESVPTTSP-------ESVSGSVPSSGSSGREEDAASTLVTGSEYETMLTEIMSMG--- 191
Query: 168 WDKETVTRALQAAYNNPERAVDYLYSGIPETAEVAVPVAHFPASQAAETGAAGAAPVSGV 227
+++E V AL+A+YNNP RAV+YL +GIP + E E G+ + VS
Sbjct: 192 YERERVVAALRASYNNPHRAVEYLLTGIPGSPE-------------PEHGSVQESQVSEQ 238
Query: 228 PNSSPLNMFPQETLSGAPAGGLGSLDFLRNNQQVWSL 264
P + A G L+FLR+ Q ++
Sbjct: 239 PATE--------------AAGENPLEFLRDQPQFQNM 261
>gi|327264110|ref|XP_003216859.1| PREDICTED: UV excision repair protein RAD23 homolog A-like [Anolis
carolinensis]
Length = 364
Score = 122 bits (305), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 75/210 (35%), Positives = 119/210 (56%), Gaps = 24/210 (11%)
Query: 3 LTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADN 62
+T+KTL+ F+IR++P +TV +K+ IE +GKD++P Q LI+ GK+L D+ + +
Sbjct: 5 VTLKTLQQQTFKIRMEPEETVRVLKEKIEAEKGKDSFPVSGQKLIYAGKILSDDVPIKEY 64
Query: 63 KVSEDGFLVVMLSKSKTLGSAGASSAQPAHTTPPTT-APSSNSTPPQEASV--------- 112
K+ E F+VVM++K+K +GA + P+ T + APSS T +
Sbjct: 65 KIDEKNFVVVMVTKNK--AGSGAPAPLPSEATSTSEPAPSSGQTQLPTTAAASPPPAAPS 122
Query: 113 ----PPPAPTPSIPASNVTSNV--TAANANSDTYGQAASNLVAGNDLEQTIQQIMDMGGG 166
PP P P ++ S++ + + D AAS LV G++ E + +IM MG
Sbjct: 123 GEEKPPEEPVTVSPQESIVSSIPPSGSMGREDD---AASTLVTGSEYETMLTEIMSMG-- 177
Query: 167 TWDKETVTRALQAAYNNPERAVDYLYSGIP 196
+++E V AL+A+YNNP RAV+YL +GIP
Sbjct: 178 -YERERVVAALRASYNNPHRAVEYLLTGIP 206
>gi|348565217|ref|XP_003468400.1| PREDICTED: UV excision repair protein RAD23 homolog A-like [Cavia
porcellus]
Length = 362
Score = 122 bits (305), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 78/212 (36%), Positives = 119/212 (56%), Gaps = 23/212 (10%)
Query: 3 LTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADN 62
+T+KTL+ F+IR++P +TV +K+ IE +G+D +P Q LI+ GK+L D+ + D
Sbjct: 5 ITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVSGQKLIYAGKILSDDVPIRDY 64
Query: 63 KVSEDGFLVVMLSKSKTLGSAGASSAQPAHTTPPTTAPSSNSTPPQEASVPPPA-PTPSI 121
++ E F+VVM++K G AG + P + PT AP S P Q S P + P+P+
Sbjct: 65 RIDEKNFVVVMVTK----GKAGQGTLAPPEIS-PTAAPEP-SAPFQLTSAPGMSHPSPAT 118
Query: 122 PASNVTSNVTAANANSDTYG-------------QAASNLVAGNDLEQTIQQIMDMGGGTW 168
S +A A+ ++ AAS LV G++ E + +IM MG +
Sbjct: 119 RDDKSPSEESAPTASPESVSGSVPSSGSSGREEDAASTLVTGSEYETMLTEIMSMG---Y 175
Query: 169 DKETVTRALQAAYNNPERAVDYLYSGIPETAE 200
D+E V AL+A+YNNP RAV+YL +GIP + E
Sbjct: 176 DRERVVAALRASYNNPHRAVEYLLTGIPGSPE 207
>gi|392883244|gb|AFM90454.1| UV excision repair protein RAD23-like B isoform 5 [Callorhinchus
milii]
Length = 378
Score = 121 bits (304), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 76/224 (33%), Positives = 119/224 (53%), Gaps = 35/224 (15%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++TVKTL+ F I+++P V A+K+ IE +GKD +P Q LI+ GK+L DET +
Sbjct: 1 MRITVKTLQQQSFHIQIEPELPVKALKEKIETEKGKDAFPVAGQKLIYAGKILDDETPII 60
Query: 61 DNKVSEDGFLVVMLSKSKTLGSAGASSAQPAHTTPPTTAPSSNSTPPQEASVPPPAPTPS 120
+ K+ E+ F+VVM++K K+ S A++ QPA + P A ++ + PP + P A T +
Sbjct: 61 EYKIDEEKFVVVMITKPKSSPSVQAAATQPATPSTPQPASTTPTVPPVSS---PTATTET 117
Query: 121 IPASNVTSNVTAANA----------------------------NSDTYGQAASNLVAGND 152
+P +N ++ + A S + A S LV G
Sbjct: 118 VP-TNTSNELNTAEKPTEKSDEISTSTSTSPSASTIRTSGGAQGSSLFDVATSALVTGQQ 176
Query: 153 LEQTIQQIMDMGGGTWDKETVTRALQAAYNNPERAVDYLYSGIP 196
E + +I MG + +E V AL+A++NNP+RAV+YL GIP
Sbjct: 177 YETMVTEITSMG---YSREQVVAALKASFNNPDRAVEYLLMGIP 217
>gi|291382841|ref|XP_002708173.1| PREDICTED: UV excision repair protein RAD23 homolog B [Oryctolagus
cuniculus]
Length = 409
Score = 121 bits (304), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 86/257 (33%), Positives = 130/257 (50%), Gaps = 48/257 (18%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++T+KTL+ F+I + P +TV A+K+ IE +GKD +P Q LI+ GK+L D+T L
Sbjct: 1 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALK 60
Query: 61 DNKVSEDGFLVVMLSKSKTLGSAGASSAQ-----------------------PAHTTPPT 97
+ K+ E F+VVM++K K + + ++ Q PA PT
Sbjct: 61 EYKIDEKNFVVVMVTKPKAVTTPAPATTQQSNSATTTAVSSSTATAVTQASTPAPALAPT 120
Query: 98 TAP------SSNSTPP-------QEASVPPPAPTPSIPASNVTSNVTAANANSDTYGQAA 144
+ P S+ S+ P QE P TP + T + + ++ S+ + A
Sbjct: 121 STPASIAPASTTSSEPAPASATKQEKPAEKPVETPVATSPTSTDSTSGDSSRSNLFEDAT 180
Query: 145 SNLVAGNDLEQTIQQIMDMGGGTWDKETVTRALQAAYNNPERAVDYLYSGIP---ETAEV 201
S LV G E + +IM MG +++E V AL+A++NNP+RAV+YL GIP E+ V
Sbjct: 181 SALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIPGDRESQAV 237
Query: 202 AVPVAHFPASQAAETGA 218
P QAA TGA
Sbjct: 238 VEP------PQAAGTGA 248
>gi|355715051|gb|AES05209.1| RAD23-like protein B [Mustela putorius furo]
Length = 406
Score = 121 bits (304), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 79/234 (33%), Positives = 120/234 (51%), Gaps = 43/234 (18%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M +T+KTL+ F+I + P +TV A+K+ IE +GKD +P Q LI+ GK+L D+T L
Sbjct: 1 MLVTLKTLQQQTFKIDIDPDETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALK 60
Query: 61 DNKVSEDGFLVVMLSKSKTLGSAGASSAQPAH---------------------------- 92
+ K+ E F+VVM++K K + A A++ Q +
Sbjct: 61 EYKIDEKNFVVVMVTKPKAVTPAPATTQQSSPATTTTVSSSTAPAVAQAPTPAPALAPTP 120
Query: 93 -----TTPPTTA-----PSSNSTPPQEASVPPPAPTPSIPASNVTSNVTAANANSDTYGQ 142
T PTTA P+S + P E PA TP + T + + ++ S+ +
Sbjct: 121 SPASITPAPTTASSEPAPASATQP--EKPAEKPAETPVATSPTATDSTSGDSSRSNLFED 178
Query: 143 AASNLVAGNDLEQTIQQIMDMGGGTWDKETVTRALQAAYNNPERAVDYLYSGIP 196
A S LV G E + +IM MG +++E V AL+A++NNP+RAV+YL GIP
Sbjct: 179 ATSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIP 229
>gi|432095937|gb|ELK26853.1| UV excision repair protein RAD23 like protein A [Myotis davidii]
Length = 363
Score = 121 bits (303), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 91/277 (32%), Positives = 142/277 (51%), Gaps = 52/277 (18%)
Query: 3 LTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADN 62
+T+KTL+ F+IR++P +TV +K+ IE +G+D +P Q LI+ GK+L D+ + D
Sbjct: 5 ITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDY 64
Query: 63 KVSEDGFLVVMLSKSK-----TLGSAGASSAQPAHTTPPTTAPSS--NSTP--------P 107
++ E F+VVM++K+K ++ +S+A P +T AP+S + TP P
Sbjct: 65 RIDEKNFVVVMVTKAKNSSGTSVPPEASSTAAPESSTSFPLAPASGMSHTPPTVREDRSP 124
Query: 108 QEASVPPPAPTPSIPASNVTSNVTAANANSDTYGQAASNLVAGNDLEQTIQQIMDMGGGT 167
E SVP +P S ++ +S AAS LV G++ E + +IM MG
Sbjct: 125 SEESVPTASP-------ESVSGSVPSSGSSGREEDAASTLVTGSEYETMLTEIMSMG--- 174
Query: 168 WDKETVTRALQAAYNNPERAVDYLYSGIPETAEVAVPVAHFPASQAAETGAAGAAPVSGV 227
+++E V AL+A+YNNP RAV+YL +GIP + E E G+ + VS
Sbjct: 175 YERERVVAALRASYNNPHRAVEYLLTGIPGSPE-------------PEHGSVQESQVS-- 219
Query: 228 PNSSPLNMFPQETLSGAPAGGLGSLDFLRNNQQVWSL 264
E S PAG L+FLR+ Q ++
Sbjct: 220 -----------EQTSTEPAGE-NPLEFLRDQPQFQNM 244
>gi|194033860|ref|XP_001927901.1| PREDICTED: UV excision repair protein RAD23 homolog B [Sus scrofa]
Length = 408
Score = 120 bits (302), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 95/302 (31%), Positives = 144/302 (47%), Gaps = 53/302 (17%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++T+KTL+ F+I + P +TV A+K+ IE +GKD +P Q LI+ GK+L D+T L
Sbjct: 1 MQITLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALK 60
Query: 61 DNKVSEDGFLVVMLSKSKTLGSAGASSAQ------------------------------- 89
+ K+ E F+VVM++K K + + ++ Q
Sbjct: 61 EYKIDEKNFVVVMVTKPKAVTTPAPATTQQSNSATTTTVSSSTAPAAAQAPTPAPALAPT 120
Query: 90 -------PAHTTPPTTAPSSNSTPPQEASVPPPAPTPSIPASNVTSNVTAANANSDTYGQ 142
PA TT ++ P+ S QE PA TP + T + + ++ S+ +
Sbjct: 121 PTPASITPASTT-ASSEPAPASATKQEKPAEKPAETPVATSPTSTDSTSGDSSRSNLFED 179
Query: 143 AASNLVAGNDLEQTIQQIMDMGGGTWDKETVTRALQAAYNNPERAVDYLYSGIPETAEVA 202
A S LV G E + +IM MG +++E V AL+A++NNP+RAV+YL GIP E
Sbjct: 180 ATSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIPGDRESQ 236
Query: 203 VPVAHFPASQAAETGAAGAAPVSGVPNSSPLNMFPQETLSGAPAGGLGSLDFLRNNQQVW 262
V PA A+ AP S V ++ T S +GG L+FLRN Q
Sbjct: 237 AVVDPPPA-------ASTGAPQSSVAAAAATTTATTTTTS---SGG-HPLEFLRNQPQFQ 285
Query: 263 SL 264
+
Sbjct: 286 QM 287
>gi|242079575|ref|XP_002444556.1| hypothetical protein SORBIDRAFT_07g023746 [Sorghum bicolor]
gi|241940906|gb|EES14051.1| hypothetical protein SORBIDRAFT_07g023746 [Sorghum bicolor]
Length = 184
Score = 120 bits (301), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 67/115 (58%), Positives = 84/115 (73%), Gaps = 13/115 (11%)
Query: 136 NSDTYGQAASNLVAGNDLEQTIQQIMDMGGGTWDKETVTRALQAAYNNPERAVDYLYSGI 195
++D Y QAASNLV+GN+LEQ IQQI+DMGGGTW+++TV RAL+AAYNNPERA+DYLYSGI
Sbjct: 71 DADVYSQAASNLVSGNNLEQIIQQILDMGGGTWERDTVVRALRAAYNNPERAIDYLYSGI 130
Query: 196 PETAEVAVPVAHFPA-----SQAAETGA--AGAAPV-----SGVPNSSPLNMFPQ 238
P E PVA PA +Q A + A A A+PV S P+++PL +FPQ
Sbjct: 131 PVNVETP-PVAGAPAGGQQTNQQAPSPAQPAVASPVQPSAASARPDANPLILFPQ 184
>gi|242023622|ref|XP_002432231.1| uv excision repair protein rad23, putative [Pediculus humanus
corporis]
gi|212517628|gb|EEB19493.1| uv excision repair protein rad23, putative [Pediculus humanus
corporis]
Length = 344
Score = 120 bits (301), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 79/199 (39%), Positives = 114/199 (57%), Gaps = 26/199 (13%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M +T+K L+ F I + + TV +K+ IE +GKD YP Q LI+ GK+L DET L+
Sbjct: 1 MIITLKNLQQQTFTIDIDVNVTVKVLKEKIEAEKGKD-YPAVNQRLIYAGKILTDETPLS 59
Query: 61 DNKVSEDGFLVVMLSKSKTLGSAGASSAQPAHTTPPTTAPSSNSTPPQEASVPPPAPTPS 120
+ K+ E F+VVM++K K P T A SS+STP P
Sbjct: 60 EYKIDEKKFIVVMVTKPK--------------LPPATHAGSSDSTP-----TPGTGDGGE 100
Query: 121 IPASNVTSNVTAANANSD---TYGQAASNLVAGNDLEQTIQQIMDMGGGTWDKETVTRAL 177
S+ TSN A+ N + ++GQA S L+ G++ Q+++ IMDMG + KE V RAL
Sbjct: 101 KQTSDTTSNEPPASENVNSGASFGQAESALLMGDEYNQSLRNIMDMG---YPKEQVERAL 157
Query: 178 QAAYNNPERAVDYLYSGIP 196
+A++NNP+RAV+YL +GIP
Sbjct: 158 RASFNNPDRAVEYLLNGIP 176
>gi|1044897|emb|CAA63145.1| MHR23A [Mus musculus]
gi|1587277|prf||2206377A MHR23A gene
Length = 363
Score = 120 bits (301), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 76/206 (36%), Positives = 116/206 (56%), Gaps = 19/206 (9%)
Query: 3 LTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADN 62
+T+KTL+ F+IR++P +TV +K+ IE +G+D +P Q LI+ GK+L D+ + D
Sbjct: 5 ITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDY 64
Query: 63 KVSEDGFLVVMLSKSKTLGSAGASSAQPAHTTPPTTAPSSNSTPPQEA---SVPPPA--- 116
+ E F+VVM++K+K AG + P +P S PP A S PPP
Sbjct: 65 HIDEKNFVVVMVTKAK----AGQGISAPPEASPTAVPEPSTPFPPVLASGMSHPPPTSRE 120
Query: 117 -PTPSIPASNVTS-----NVTAANANSDTYGQAASNLVAGNDLEQTIQQIMDMGGGTWDK 170
+PS ++ TS ++ +S AAS LV G++ E + +IM MG +++
Sbjct: 121 DKSPSEESTTTTSPESISGSVPSSGSSGREEDAASTLVTGSEYETMLTEIMSMG---YER 177
Query: 171 ETVTRALQAAYNNPERAVDYLYSGIP 196
E V AL+A+YNNP RAV+YL +GIP
Sbjct: 178 ERVVAALRASYNNPHRAVEYLLTGIP 203
>gi|384248073|gb|EIE21558.1| UV excision repair protein Rad23 [Coccomyxa subellipsoidea C-169]
Length = 382
Score = 120 bits (301), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 100/273 (36%), Positives = 150/273 (54%), Gaps = 19/273 (6%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
+K+T KT++G+ FE+ + SD + VK+ IE VQG D +P Q++I+ GKVLKD+TTL
Sbjct: 4 VKVTFKTVQGNKFELELDSSDKIENVKQKIEGVQGAD-FPAANQVIIYQGKVLKDDTTLE 62
Query: 61 DNKVSEDGFLVVMLSKSKTLGSAGASSAQPAHTTPPTTAPSSNSTPPQEASVPPPAPTPS 120
+NK++ + F+VVM+ +++ S TT P A ++ + P E P
Sbjct: 63 ENKITHENFVVVMIQRARKAASPKKEEPAAPTTTAPAPAEAAPTAPAAEVPAQQPRAAAV 122
Query: 121 IPASNVTSNVTAANANSDTYGQAASNLVAGNDLEQTIQQIMDMGGGTWDKETVTRALQAA 180
A+ AA + ++ ++L+ G LE TI I++MG +D+E V RA++AA
Sbjct: 123 PAAAAAAPAAGAAAGDLNS-----NSLLMGTQLESTIAGIVEMG---FDREEVVRAMRAA 174
Query: 181 YNNPERAVDYLYSGIPETAE-------VAVPVAHFPASQAAETGAAGAAPVSGVPNSSPL 233
+NNP+RAV+YL +GIP E + A+ AA T A G P SG PN+ PL
Sbjct: 175 FNNPDRAVEYLMTGIPNNVEAPAPAPGASPAAGAVSAAPAAGTPATGGGPASG-PNAQPL 233
Query: 234 NMF--PQETLSGAPAGGLGSLDFLRNNQQVWSL 264
+MF +G G G LDFLR+N Q +L
Sbjct: 234 DMFAPQAPAGAGGAGGAAGPLDFLRSNPQFIAL 266
>gi|351710326|gb|EHB13245.1| UV excision repair protein RAD23-like protein B [Heterocephalus
glaber]
Length = 406
Score = 120 bits (301), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 99/306 (32%), Positives = 145/306 (47%), Gaps = 63/306 (20%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++T+KTL+ F+I V D V A+K+ IE +GKD +P Q LI+ GK+L D+T L
Sbjct: 1 MQVTLKTLQQQIFKIDV---DLVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALK 57
Query: 61 DNKVSEDGFLVVMLSKSKTLGSAGASSAQ------------------------------- 89
+ K+ E F+VVM++K K + + ++ Q
Sbjct: 58 EYKIDEKNFVVVMVTKPKAVTTPAPATTQQSSPASTTTVSSSSATAVAQAPTPAPALAPT 117
Query: 90 --PAHTTPPTTAPSSNSTPP----QEASVPPPAPTP--SIPASNVTSNVTAANANSDTYG 141
PA P T SS P QE PA TP S PAS T N + ++ S+ +
Sbjct: 118 SAPASIAPAVTTVSSEPAPASAAQQEKPSEKPAETPVASSPAS--TDNTSGDSSRSNLFE 175
Query: 142 QAASNLVAGNDLEQTIQQIMDMGGGTWDKETVTRALQAAYNNPERAVDYLYSGIP---ET 198
A S LV G E + +IM MG +++E V AL+A++NNP+RAV+YL GIP E+
Sbjct: 176 DATSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIPGDRES 232
Query: 199 AEVAVPVAHFPASQAAETGAAGAAPVSGVPNSSPLNMFPQETLSGAPAGGLGSLDFLRNN 258
V P QAA TGA ++ V+ ++ + + G L+FLRN
Sbjct: 233 QAVVDP------PQAASTGAPQSSAVAAAAATT-------TAATTTTSSGGHPLEFLRNQ 279
Query: 259 QQVWSL 264
Q +
Sbjct: 280 PQFQQM 285
>gi|388511083|gb|AFK43607.1| unknown [Lotus japonicus]
Length = 228
Score = 119 bits (299), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 66/115 (57%), Positives = 81/115 (70%), Gaps = 8/115 (6%)
Query: 156 TIQQIMDMGGGTWDKETVTRALQAAYNNPERAVDYLYSGIPETAEVAVPVAHFPASQAAE 215
IQQI+DMGGG+WD++TV RAL+AA+NNPERAVDYLYSGIPE AE A PV PAS
Sbjct: 1 MIQQILDMGGGSWDRDTVVRALRAAFNNPERAVDYLYSGIPEQAE-APPVTQMPASAQPG 59
Query: 216 TGAAGAAPVSGV----PNSSPLNMFPQ--ETLSGAPAGGLGSLDFLRNNQQVWSL 264
A A ++ V PN++PL++FPQ + PAG GSLDFLRN+QQ +L
Sbjct: 60 NPPAAAPQLANVPSSGPNANPLDLFPQGLPNVGSGPAGA-GSLDFLRNSQQFQAL 113
>gi|41056115|ref|NP_956858.1| UV excision repair protein RAD23 homolog B [Danio rerio]
gi|33989500|gb|AAH56578.1| RAD23 homolog B (S. cerevisiae) [Danio rerio]
Length = 382
Score = 119 bits (299), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 95/281 (33%), Positives = 146/281 (51%), Gaps = 32/281 (11%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++T+KTL+ F+I + +TV A+K+ IE+ +GKD +P Q LI+ GK+L D+T L
Sbjct: 1 MQITLKTLQQQTFKIDIDAEETVKALKEKIENEKGKDGFPVAGQKLIYAGKILSDDTALK 60
Query: 61 DNKVSEDGFLVVMLSKSKTLGSAGASSAQPAHTTPPTTAPSSNSTPPQEASV-------- 112
+ K+ E F+VVM++K K+ + S+ + ++ TTA +S + S
Sbjct: 61 EYKIDEKNFVVVMVTKPKSASAPAPPSSSSSSSSSSTTASASAAPSAAPVSESPSEEEKK 120
Query: 113 ---------PPPAPTPSIPASNVTSNVTAANANSDTYGQAASNLVAGNDLEQTIQQIMDM 163
P PA TP S+ + NAN + +A S LV G E + +IM M
Sbjct: 121 PSEEKPSSDPAPATTP-------VSSGSLPNAN--IFEEATSALVTGQSYENMVTEIMLM 171
Query: 164 GGGTWDKETVTRALQAAYNNPERAVDYLYSGIPETAEVAVPVAHFPASQAAETGAAGAAP 223
G ++++ V AL+A++NNP+RAV+YL +GIP E +V A S + T A+ AP
Sbjct: 172 G---YERDRVVAALRASFNNPDRAVEYLLTGIPAEGEGSVVGAVDAVSPSGSTPASAPAP 228
Query: 224 VSGVPNSSPLNMFPQETLSGAPAGGLGSLDFLRNNQQVWSL 264
SSP + P + S A G L+FLRN Q +
Sbjct: 229 AISTGLSSPSSTAPAQPSS---ASGANPLEFLRNQPQFLQM 266
>gi|114052667|ref|NP_001039775.1| UV excision repair protein RAD23 homolog B [Bos taurus]
gi|109892954|sp|Q29RK4.1|RD23B_BOVIN RecName: Full=UV excision repair protein RAD23 homolog B
gi|88954168|gb|AAI14134.1| RAD23 homolog B (S. cerevisiae) [Bos taurus]
gi|296484403|tpg|DAA26518.1| TPA: UV excision repair protein RAD23 homolog B [Bos taurus]
Length = 408
Score = 119 bits (299), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 94/301 (31%), Positives = 144/301 (47%), Gaps = 51/301 (16%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M +T+KTL+ F+I + P +TV A+K+ IE +GKD +P Q LI+ GK+L D+T L
Sbjct: 1 MLVTLKTLQQQTFKIDIDPDETVRALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALK 60
Query: 61 DNKVSEDGFLVVMLSKSKTLGSAGASSAQPAHTTPPTT---------------------- 98
+ K+ E F+VVM++K K + + ++ Q +++ TT
Sbjct: 61 EYKIDEKNFVVVMVTKPKAVTTPAPATTQQSNSAATTTVSSSTAPAVTQAPAPAPASAPT 120
Query: 99 --------APSSNSTPP-------QEASVPPPAPTPSIPASNVTSNVTAANANSDTYGQA 143
AP++ S+ P QE P TP T + + ++ S+ + A
Sbjct: 121 PTPVSVTPAPTTASSEPAPASAAKQEKPAERPVETPVATTPTSTDSTSGDSSRSNLFEDA 180
Query: 144 ASNLVAGNDLEQTIQQIMDMGGGTWDKETVTRALQAAYNNPERAVDYLYSGIPETAEVAV 203
S LV G E + +IM MG +++E V AL+A++NNP+RAV+YL GIP E
Sbjct: 181 TSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIPGDRESQA 237
Query: 204 PVAHFPASQAAETGAAGAAPVSGVPNSSPLNMFPQETLSGAPAGGLGSLDFLRNNQQVWS 263
V PA A+ AP S V ++ T S +GG L+FLRN Q
Sbjct: 238 VVDPPPA-------ASTGAPQSSVAAAAATTTATTTTTS---SGG-HPLEFLRNQPQFQQ 286
Query: 264 L 264
+
Sbjct: 287 M 287
>gi|61557236|ref|NP_001013208.1| UV excision repair protein RAD23 homolog A [Rattus norvegicus]
gi|54038637|gb|AAH84695.1| RAD23 homolog A (S. cerevisiae) [Rattus norvegicus]
Length = 351
Score = 119 bits (298), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 74/210 (35%), Positives = 117/210 (55%), Gaps = 19/210 (9%)
Query: 3 LTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADN 62
+T+KTL+ F+IR++P +TV +K+ IE +G+D +P Q LI+ GK+L D+ + +
Sbjct: 5 ITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDIPIKEY 64
Query: 63 KVSEDGFLVVMLSKSKTLGSAGASSAQPAHTTPPTTAPSSNSTPPQEA---SVPPPAPTP 119
+ E F+VVM++K+K AG + P +P S PP A S PPP+
Sbjct: 65 HIDEKNFVVVMVTKAK----AGQGTPAPPEASPTAAPEPSTPFPPAPASGMSHPPPSNRE 120
Query: 120 SIPASNVTSNVTAANANSDTYG---------QAASNLVAGNDLEQTIQQIMDMGGGTWDK 170
+S ++ T+ + S + AAS LV G++ E + +IM MG +++
Sbjct: 121 DKSSSEESATTTSPESISGSVPSSGSSGREEDAASTLVTGSEYETMLTEIMSMG---YER 177
Query: 171 ETVTRALQAAYNNPERAVDYLYSGIPETAE 200
E V AL+A+YNNP RAV+YL +GIP + E
Sbjct: 178 ERVVAALRASYNNPHRAVEYLLTGIPGSPE 207
>gi|149037839|gb|EDL92199.1| RAD23a homolog (S. cerevisiae) [Rattus norvegicus]
Length = 363
Score = 119 bits (298), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 73/206 (35%), Positives = 115/206 (55%), Gaps = 19/206 (9%)
Query: 3 LTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADN 62
+T+KTL+ F+IR++P +TV +K+ IE +G+D +P Q LI+ GK+L D+ + +
Sbjct: 5 ITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDIPIKEY 64
Query: 63 KVSEDGFLVVMLSKSKTLGSAGASSAQPAHTTPPTTAPSSNSTPPQEA---SVPPPAPTP 119
+ E F+VVM++K+K AG + P +P S PP A S PPP+
Sbjct: 65 HIDEKNFVVVMVTKAK----AGQGTPAPPEASPTAAPEPSTPFPPAPASGMSHPPPSNRE 120
Query: 120 SIPASNVTSNVTAANANSDTYG---------QAASNLVAGNDLEQTIQQIMDMGGGTWDK 170
+S ++ T+ + S + AAS LV G++ E + +IM MG +++
Sbjct: 121 DKSSSEESATTTSPESISGSVPSSGSSGREEDAASTLVTGSEYETMLTEIMSMG---YER 177
Query: 171 ETVTRALQAAYNNPERAVDYLYSGIP 196
E V AL+A+YNNP RAV+YL +GIP
Sbjct: 178 ERVVAALRASYNNPHRAVEYLLTGIP 203
>gi|335282758|ref|XP_003123386.2| PREDICTED: UV excision repair protein RAD23 homolog A-like [Sus
scrofa]
Length = 363
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 88/274 (32%), Positives = 139/274 (50%), Gaps = 46/274 (16%)
Query: 3 LTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADN 62
+T+KTL+ F+IR++P +TV +K+ IE +G+D +P Q LI+ GK+L D+ + D
Sbjct: 5 ITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDY 64
Query: 63 KVSEDGFLVVMLSKSKTLGSAGASSAQPAHTTPPTTAPSSNSTP--PQEASVPPPAPT-- 118
++ E F+VVM++K+KT S G S P +P SS S P P PP+P
Sbjct: 65 RIDEKNFVVVMVTKAKT--SPGTSV--PPEASPTAAPESSTSFPLAPASGMSHPPSPARE 120
Query: 119 ------PSIPASNVTSNVTAANANSDTYGQ--AASNLVAGNDLEQTIQQIMDMGGGTWDK 170
S+P ++ S + ++ + + AAS LV G++ E + +I MG +++
Sbjct: 121 DKSPSEESVPTTSPESVSGSVPSSGSSGREEDAASTLVTGSEYETMLTEITSMG---YER 177
Query: 171 ETVTRALQAAYNNPERAVDYLYSGIPETAEVAVPVAHFPASQAAETGAAGAAPVSGVPNS 230
E V AL+A+YNNP RAV+YL +GIP + E E G+ + VS P +
Sbjct: 178 ERVVAALRASYNNPHRAVEYLLTGIPGSPE-------------PEHGSVQESQVSEQPPT 224
Query: 231 SPLNMFPQETLSGAPAGGLGSLDFLRNNQQVWSL 264
A G L+FLR+ Q ++
Sbjct: 225 E--------------AAGENPLEFLRDQPQFQNM 244
>gi|26337167|dbj|BAC32268.1| unnamed protein product [Mus musculus]
Length = 296
Score = 118 bits (295), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 76/210 (36%), Positives = 117/210 (55%), Gaps = 19/210 (9%)
Query: 3 LTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADN 62
+T+KTL+ F+IR++P +TV +K+ IE +G+D +P Q LI+ GK+L D+ + +
Sbjct: 5 ITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIKEY 64
Query: 63 KVSEDGFLVVMLSKSKTLGSAGASSAQPAHTTPPTTAPSSNSTPPQEA---SVPPPA--- 116
+ E F+VVM++K+K AG P +P S PP A S PPP
Sbjct: 65 HIDEKNFVVVMVTKAK----AGQGIPAPPEASPTAVPEPSTPFPPVLASGMSHPPPTSRE 120
Query: 117 -PTPSIPASNVTS-----NVTAANANSDTYGQAASNLVAGNDLEQTIQQIMDMGGGTWDK 170
+PS ++ TS ++ +S AAS LV G++ E + +IM MG +++
Sbjct: 121 DKSPSEESTTTTSPESISGSVPSSGSSGREEDAASTLVTGSEYETMLTEIMSMG---YER 177
Query: 171 ETVTRALQAAYNNPERAVDYLYSGIPETAE 200
E V AL+A+YNNP RAV+YL +GIP + E
Sbjct: 178 ERVVAALRASYNNPHRAVEYLLTGIPGSPE 207
>gi|148679012|gb|EDL10959.1| RAD23a homolog (S. cerevisiae), isoform CRA_a [Mus musculus]
Length = 379
Score = 118 bits (295), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 76/210 (36%), Positives = 117/210 (55%), Gaps = 19/210 (9%)
Query: 3 LTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADN 62
+T+KTL+ F+IR++P +TV +K+ IE +G+D +P Q LI+ GK+L D+ + +
Sbjct: 22 ITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIKEY 81
Query: 63 KVSEDGFLVVMLSKSKTLGSAGASSAQPAHTTPPTTAPSSNSTPPQEA---SVPPPA--- 116
+ E F+VVM++K+K AG P +P S PP A S PPP
Sbjct: 82 HIDEKNFVVVMVTKAK----AGQGIPAPPEASPTAVPEPSTPFPPVLASGMSHPPPTSRE 137
Query: 117 -PTPSIPASNVTS-----NVTAANANSDTYGQAASNLVAGNDLEQTIQQIMDMGGGTWDK 170
+PS ++ TS ++ +S AAS LV G++ E + +IM MG +++
Sbjct: 138 DKSPSEESTTTTSPESISGSVPSSGSSGREEDAASTLVTGSEYETMLTEIMSMG---YER 194
Query: 171 ETVTRALQAAYNNPERAVDYLYSGIPETAE 200
E V AL+A+YNNP RAV+YL +GIP + E
Sbjct: 195 ERVVAALRASYNNPHRAVEYLLTGIPGSPE 224
>gi|116283302|gb|AAH03846.1| Rad23a protein [Mus musculus]
Length = 349
Score = 118 bits (295), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 75/206 (36%), Positives = 115/206 (55%), Gaps = 19/206 (9%)
Query: 3 LTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADN 62
+T+KTL+ F+IR++P +TV +K+ IE +G+D +P Q LI+ GK+L D+ + +
Sbjct: 5 ITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIKEY 64
Query: 63 KVSEDGFLVVMLSKSKTLGSAGASSAQPAHTTPPTTAPSSNSTPPQEA---SVPPPA--- 116
+ E F+VVM++K+K AG P +P S PP A S PPP
Sbjct: 65 HIDEKNFVVVMVTKAK----AGQGIPAPPEASPTAVPEPSTPFPPVLASGMSHPPPTSRE 120
Query: 117 -PTPSIPASNVTS-----NVTAANANSDTYGQAASNLVAGNDLEQTIQQIMDMGGGTWDK 170
+PS ++ TS ++ +S AAS LV G++ E + +IM MG +++
Sbjct: 121 DKSPSEESTTTTSPESISGSVPSSGSSGREEDAASTLVTGSEYETMLTEIMSMG---YER 177
Query: 171 ETVTRALQAAYNNPERAVDYLYSGIP 196
E V AL+A+YNNP RAV+YL +GIP
Sbjct: 178 ERVVAALRASYNNPHRAVEYLLTGIP 203
>gi|431898018|gb|ELK06725.1| UV excision repair protein RAD23 like protein A [Pteropus alecto]
Length = 363
Score = 118 bits (295), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 91/279 (32%), Positives = 141/279 (50%), Gaps = 56/279 (20%)
Query: 3 LTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADN 62
+T+KTL+ F+IR++ +TV +K+ IE +G+D +P Q LI+ GK+L D+ + D
Sbjct: 5 ITLKTLQQQTFKIRMELDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDY 64
Query: 63 KVSEDGFLVVMLSKSKTLGSAGAS-------SAQPAHTTPPTTAPS---SNSTP------ 106
++ E F+VVM++K+KT S G S +A P +T + AP+ S+S P
Sbjct: 65 RIDEKNFVVVMVTKAKT--SPGTSVPPEASPTAAPESSTSFSPAPASGMSHSPPTAREDK 122
Query: 107 -PQEASVPPPAPTPSIPASNVTSNVTAANANSDTYGQAASNLVAGNDLEQTIQQIMDMGG 165
P E SVP +P S ++ +S AAS LV G++ E + +IM MG
Sbjct: 123 SPSEESVPTTSP-------ESVSGSVPSSGSSGREEDAASTLVTGSEYETMLTEIMSMG- 174
Query: 166 GTWDKETVTRALQAAYNNPERAVDYLYSGIPETAEVAVPVAHFPASQAAETGAAGAAPVS 225
+++E V AL+A+YNNP RAV+YL +GIP + E E G+ + VS
Sbjct: 175 --YERERVVAALRASYNNPHRAVEYLLTGIPGSPE-------------PEHGSVQESQVS 219
Query: 226 GVPNSSPLNMFPQETLSGAPAGGLGSLDFLRNNQQVWSL 264
P + A G L+FLR+ Q ++
Sbjct: 220 EQPATE--------------AAGENPLEFLRDQPQFQNM 244
>gi|74224982|dbj|BAE38204.1| unnamed protein product [Mus musculus]
Length = 322
Score = 117 bits (294), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 76/210 (36%), Positives = 117/210 (55%), Gaps = 19/210 (9%)
Query: 3 LTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADN 62
+T+KTL+ F+IR++P +TV +K+ IE +G+D +P Q LI+ GK+L D+ + +
Sbjct: 5 ITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIKEY 64
Query: 63 KVSEDGFLVVMLSKSKTLGSAGASSAQPAHTTPPTTAPSSNSTPPQEA---SVPPPA--- 116
+ E F+VVM++K+K AG P +P S PP A S PPP
Sbjct: 65 HIDEKNFVVVMVTKAK----AGQGIPAPPEASPTAVPEPSTPFPPVLASGMSHPPPTSRE 120
Query: 117 -PTPSIPASNVTS-----NVTAANANSDTYGQAASNLVAGNDLEQTIQQIMDMGGGTWDK 170
+PS ++ TS ++ +S AAS LV G++ E + +IM MG +++
Sbjct: 121 DKSPSEESTTTTSPESISGSVPSSGSSGREEDAASTLVTGSEYETMLTEIMSMG---YER 177
Query: 171 ETVTRALQAAYNNPERAVDYLYSGIPETAE 200
E V AL+A+YNNP RAV+YL +GIP + E
Sbjct: 178 ERVVAALRASYNNPHRAVEYLLTGIPGSPE 207
>gi|90657662|gb|ABD96960.1| hypothetical protein [Cleome spinosa]
Length = 435
Score = 117 bits (294), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 54/78 (69%), Positives = 64/78 (82%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
MK+ VKTLKG+HFEI V+P DTV VKKNIE VQ D YP QQ+LIH GKVLKDETT+
Sbjct: 1 MKIFVKTLKGTHFEIEVKPEDTVADVKKNIETVQSPDVYPAAQQMLIHQGKVLKDETTME 60
Query: 61 DNKVSEDGFLVVMLSKSK 78
+NKV+E+ F+V+MLSKSK
Sbjct: 61 ENKVAENSFIVIMLSKSK 78
>gi|34447211|ref|NP_033036.2| UV excision repair protein RAD23 homolog A [Mus musculus]
gi|26332489|dbj|BAC29962.1| unnamed protein product [Mus musculus]
gi|187952977|gb|AAI38685.1| Rad23a protein [Mus musculus]
Length = 362
Score = 117 bits (294), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 75/206 (36%), Positives = 115/206 (55%), Gaps = 19/206 (9%)
Query: 3 LTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADN 62
+T+KTL+ F+IR++P +TV +K+ IE +G+D +P Q LI+ GK+L D+ + +
Sbjct: 5 ITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIKEY 64
Query: 63 KVSEDGFLVVMLSKSKTLGSAGASSAQPAHTTPPTTAPSSNSTPPQEA---SVPPPA--- 116
+ E F+VVM++K+K AG P +P S PP A S PPP
Sbjct: 65 HIDEKNFVVVMVTKAK----AGQGIPAPPEASPTAVPEPSTPFPPVLASGMSHPPPTSRE 120
Query: 117 -PTPSIPASNVTS-----NVTAANANSDTYGQAASNLVAGNDLEQTIQQIMDMGGGTWDK 170
+PS ++ TS ++ +S AAS LV G++ E + +IM MG +++
Sbjct: 121 DKSPSEESTTTTSPESISGSVPSSGSSGREEDAASTLVTGSEYETMLTEIMSMG---YER 177
Query: 171 ETVTRALQAAYNNPERAVDYLYSGIP 196
E V AL+A+YNNP RAV+YL +GIP
Sbjct: 178 ERVVAALRASYNNPHRAVEYLLTGIP 203
>gi|341941880|sp|P54726.2|RD23A_MOUSE RecName: Full=UV excision repair protein RAD23 homolog A;
Short=HR23A; Short=mHR23A
gi|148679013|gb|EDL10960.1| RAD23a homolog (S. cerevisiae), isoform CRA_b [Mus musculus]
gi|219519380|gb|AAI45373.1| Rad23a protein [Mus musculus]
Length = 363
Score = 117 bits (294), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 75/206 (36%), Positives = 115/206 (55%), Gaps = 19/206 (9%)
Query: 3 LTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADN 62
+T+KTL+ F+IR++P +TV +K+ IE +G+D +P Q LI+ GK+L D+ + +
Sbjct: 5 ITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIKEY 64
Query: 63 KVSEDGFLVVMLSKSKTLGSAGASSAQPAHTTPPTTAPSSNSTPPQEA---SVPPPA--- 116
+ E F+VVM++K+K AG P +P S PP A S PPP
Sbjct: 65 HIDEKNFVVVMVTKAK----AGQGIPAPPEASPTAVPEPSTPFPPVLASGMSHPPPTSRE 120
Query: 117 -PTPSIPASNVTS-----NVTAANANSDTYGQAASNLVAGNDLEQTIQQIMDMGGGTWDK 170
+PS ++ TS ++ +S AAS LV G++ E + +IM MG +++
Sbjct: 121 DKSPSEESTTTTSPESISGSVPSSGSSGREEDAASTLVTGSEYETMLTEIMSMG---YER 177
Query: 171 ETVTRALQAAYNNPERAVDYLYSGIP 196
E V AL+A+YNNP RAV+YL +GIP
Sbjct: 178 ERVVAALRASYNNPHRAVEYLLTGIP 203
>gi|296418227|ref|XP_002838743.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295634704|emb|CAZ82934.1| unnamed protein product [Tuber melanosporum]
Length = 385
Score = 117 bits (292), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 96/284 (33%), Positives = 143/284 (50%), Gaps = 41/284 (14%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
MKLT K LK F I +P+DT+ VK+ I +G D Q LI++GK+L+D+ T+
Sbjct: 1 MKLTFKDLKQQKFVIDAEPTDTISQVKEKINKEKGWD---AAAQKLIYSGKILQDDKTVG 57
Query: 61 DNKVSEDGFLVVMLSKSKTLGSAGASSAQPAHTTPPTTAPSSNSTPPQEASVPPPAPTPS 120
D K+ E GF+V M+S S+ +++ + +TP APS+ P ++SVPP TPS
Sbjct: 58 DYKIEEKGFVVCMISNKPKAASSSSAAGSSSASTP-VKAPST----PAQSSVPP---TPS 109
Query: 121 IPASNVTSNVTAANAN-SDTYGQAASNLVAGNDLEQTIQQIMDMGGGTWDKETVTRALQA 179
PA VT + T+ +A +T A + ND E I +M MG +++ + RA++A
Sbjct: 110 APAQAVTGSSTSTSAAVPETPTPAGAVGTTFNDPEDAIVNMMGMG---FERSEIERAMRA 166
Query: 180 AYNNPERAVDYLYSGIPETAEVAVPV-------------AHFPASQAAETGAAGAAPVSG 226
A+ NP+RAVDYL +GIPE P + + A G+A G
Sbjct: 167 AFFNPDRAVDYLLNGIPEHLTQERPAQSSTTRPAAQSAQSAARPAAATAPATGGSASGEG 226
Query: 227 VPNSSPLNMFPQETLSGAPAGG------------LGSLDFLRNN 258
+ +N+F + + GG LG+LDFLRNN
Sbjct: 227 AEPEN-INLFEAAAAAASQRGGAHSQGRSGGAASLGNLDFLRNN 269
>gi|194213056|ref|XP_001914974.1| PREDICTED: UV excision repair protein RAD23 homolog A-like [Equus
caballus]
Length = 393
Score = 116 bits (291), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 89/255 (34%), Positives = 133/255 (52%), Gaps = 48/255 (18%)
Query: 23 VMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVMLSKSKTLGS 82
V +K+ IE +G+D +P Q LI+ GK+L D+ + D ++ E F+VVM++K+KT
Sbjct: 55 VKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDYRIDEKNFVVVMVTKAKT--- 111
Query: 83 AGASSAQPAHTTPPTTAPSSNST-PPQEA---SVPPPAPT-------PSIPASNVTSNVT 131
SSA P T+ PT AP S++T PP A S PPPAP SIPA++ S
Sbjct: 112 -SPSSAVPPETS-PTAAPESSTTFPPAPASGMSHPPPAPREDKSPSEESIPATSPESVSG 169
Query: 132 AANANSDTYGQ--AASNLVAGNDLEQTIQQIMDMGGGTWDKETVTRALQAAYNNPERAVD 189
+ ++ + + AAS LV G++ E + +IM MG +++E V AL+A+YNNP RAV+
Sbjct: 170 SVPSSGSSGREEDAASTLVTGSEYETMLTEIMSMG---YERERVVAALRASYNNPHRAVE 226
Query: 190 YLYSGIPETAEVAVPVAHFPASQAAETGAAGAAPVSGVPNSSPLNMFPQETLSGAPAGGL 249
YL +GIP + E E G+ + VS P + A G
Sbjct: 227 YLLTGIPGSPE-------------PEHGSVQESQVSEQPTTE--------------AAGE 259
Query: 250 GSLDFLRNNQQVWSL 264
L+FLR+ Q ++
Sbjct: 260 NPLEFLRDQPQFQNM 274
>gi|37595434|gb|AAQ94603.1| RAD23 homolog B [Danio rerio]
Length = 380
Score = 115 bits (287), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 94/285 (32%), Positives = 146/285 (51%), Gaps = 42/285 (14%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++T+KTL+ F+I + +TV A+K+ IE+ +GKD +P Q LI+ GK+L D+T L
Sbjct: 1 MQITLKTLQQQTFKIDIDAEETVKALKEKIENEKGKDGFPVAGQKLIYAGKILSDDTALK 60
Query: 61 DNKVSEDGFLVVMLSKSKTLGSAGASSAQPAHTTPPTTAPSSNSTPPQEASV-------- 112
+ K+ E F+VVM++K K+ + S+ + ++ TTA +S + S
Sbjct: 61 EYKIDEKNFVVVMVTKPKSASAPAPPSSSSSSSSSSTTASASAAPSAAPVSESPSEEEKK 120
Query: 113 ---------PPPAPTP----SIPASNVTSNVTAANANSDTYGQAASNLVAGNDLEQTIQQ 159
P PA TP S+P +N+ T+A GQ+ N+V +
Sbjct: 121 PSEEKPSSDPAPATTPVSSGSLPNANIFEEATSA------LGQSYENMVT---------E 165
Query: 160 IMDMGGGTWDKETVTRALQAAYNNPERAVDYLYSGIPETAEVAVPVAHFPASQAAETGAA 219
IM MG ++++ V AL+A++NNP+RAV+YL +GIP E +V A S + T A+
Sbjct: 166 IMLMG---YERDRVVAALRASFNNPDRAVEYLLTGIPAEGEGSVVGAVDAVSPSGSTPAS 222
Query: 220 GAAPVSGVPNSSPLNMFPQETLSGAPAGGLGSLDFLRNNQQVWSL 264
AP SSP + P + S A G L+FLRN Q +
Sbjct: 223 APAPAISTGLSSPSSTAPAQPSS---ASGANPLEFLRNQPQFLQM 264
>gi|410978805|ref|XP_003995778.1| PREDICTED: UV excision repair protein RAD23 homolog B isoform 1
[Felis catus]
Length = 408
Score = 114 bits (286), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 77/233 (33%), Positives = 120/233 (51%), Gaps = 40/233 (17%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M +T+KTL+ F+I + P +TV A+K+ IE +GKD +P Q LI+ GK+L D+T L
Sbjct: 1 MLVTLKTLQQQTFKIDIDPDETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALK 60
Query: 61 DNKVSEDGFLVVMLSKSKTLGSAGASSAQ---------------PAHTTPPTTAPS---- 101
+ K+ E F+VVM++K K + + ++ Q PA PT+ P+
Sbjct: 61 EYKIDEKNFVVVMVTKPKAVTTPAPATTQQSNPATTTTVSSTTAPAVVQVPTSPPALAPT 120
Query: 102 ------------SNSTP------PQEASVPPPAPTPSIPASNVTSNVTAANANSDTYGQA 143
++S P QE PA TP + T + + ++ S+ + A
Sbjct: 121 PTPASITPASTTASSEPAPASATKQEKPAEKPAETPVATSPTSTDSTSGDSSRSNLFEDA 180
Query: 144 ASNLVAGNDLEQTIQQIMDMGGGTWDKETVTRALQAAYNNPERAVDYLYSGIP 196
S LV G E + +IM MG +++E V AL+A++NNP+RAV+YL GIP
Sbjct: 181 TSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIP 230
>gi|291223551|ref|XP_002731773.1| PREDICTED: protein RAD23 repair 23 (2L942)-like [Saccoglossus
kowalevskii]
Length = 601
Score = 114 bits (285), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 72/210 (34%), Positives = 119/210 (56%), Gaps = 19/210 (9%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M +T+KTL+ F++ ++P+ TV +K +E+V+GKD +P Q LI+ G++L D+ ++
Sbjct: 1 MLITLKTLQQQTFKVEIEPTKTVKDLKAKVEEVRGKDGFPAAGQKLIYAGRILADDKLIS 60
Query: 61 DNKVSEDGFLVVMLSKSKTLGSAGASSAQPAHTTPPTTAPSSNSTPPQEASV-------- 112
D +SE+ F+VVM++K K A + + P TAPS + P+E
Sbjct: 61 DYNMSEENFVVVMVTKPK-----AAPKTESTVESKPATAPSQPAEKPKEEKKEETKEEKI 115
Query: 113 ---PPPAPTPSIPASNVTSNVTAANANSDTYGQAASNLVAGNDLEQTIQQIMDMGGGTWD 169
PP + + + TA+ + + T A S L+ G E + ++M+MG ++
Sbjct: 116 DDKPPTESASASTETAAGTTTTASTSLASTLSAAESTLLTGAAYENVVAELMNMG---YE 172
Query: 170 KETVTRALQAAYNNPERAVDYLYSGIPETA 199
++ V RAL+AA+NNP+RAVDYL SGIPE+
Sbjct: 173 RDPVVRALRAAFNNPDRAVDYLLSGIPESV 202
>gi|126335852|ref|XP_001374067.1| PREDICTED: UV excision repair protein RAD23 homolog B [Monodelphis
domestica]
Length = 411
Score = 113 bits (283), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 97/307 (31%), Positives = 145/307 (47%), Gaps = 59/307 (19%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++T+KTL+ F+I + P +TV A+K+ IE +GKD +P Q LI+ GK+L D+T L
Sbjct: 1 MQITLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALK 60
Query: 61 DNKVSEDGFLVVMLSKSKTLGSAGASSAQPAHTTP-----------------PTTAPS-- 101
+ K+ E F+VVM++K K ++ S A + P PT +P+
Sbjct: 61 EYKIDEKNFVVVMVTKPKAAATSAPSPATTQQSIPATTSTVSSSTAASVAQAPTPSPALA 120
Query: 102 --------------------SNSTPPQEASVPPPAPTPSIPASNVTSNVTAANA-NSDTY 140
S P +E P P I S +S+ T ++ S+ +
Sbjct: 121 PTPTPTSVTPTPAAAVCEPIPTSAPKEEKPAEKPVEAP-IGVSPTSSDSTLGDSSRSNLF 179
Query: 141 GQAASNLVAGNDLEQTIQQIMDMGGGTWDKETVTRALQAAYNNPERAVDYLYSGIP---E 197
A S LV G E + +IM MG +++E V AL+A++NNP+RAV+YL GIP E
Sbjct: 180 EDATSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIPGDRE 236
Query: 198 TAEVAVPVAHFPASQAAETGAAGAAPVSGVPNSSPLNMFPQETLSGAPAGGLGSLDFLRN 257
V P QAA TGAA ++ V+ ++ T G P L+FLRN
Sbjct: 237 NQSVVDP------PQAASTGAAQSSAVAAAAATTTATTTTTTTSGGHP------LEFLRN 284
Query: 258 NQQVWSL 264
Q +
Sbjct: 285 QPQFQQM 291
>gi|307211720|gb|EFN87721.1| UV excision repair protein RAD23-like protein A [Harpegnathos
saltator]
Length = 357
Score = 113 bits (283), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 73/201 (36%), Positives = 107/201 (53%), Gaps = 20/201 (9%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M +T+K L+ F I + S TV +K+ IE +G P QQ LI+ GK+L DE L
Sbjct: 1 MIITLKNLQQQTFTIEIDSSQTVKDLKQKIETQKG---LPAEQQKLIYAGKILADEQPLT 57
Query: 61 DNKVSEDGFLVVMLSKSKTLGSAGASSAQPAHTTPPTTAPSSNSTPPQEASVPPPAPTPS 120
+ + E F+VVM++K KT + S Q N +SV P+P P+
Sbjct: 58 EYNIDEKKFIVVMVTKPKTSATPKTSDEQRTE--------GDNKEESTSSSVAQPSPNPT 109
Query: 121 IP-----ASNVTSNVTAANANSDTYGQAASNLVAGNDLEQTIQQIMDMGGGTWDKETVTR 175
+ AS V + AA + GQA S L+ G D ++ IMDMG +++E V +
Sbjct: 110 VQDTSRAASTVQEQIAAA-VPAAGCGQAESALLMGEDYNTMVKNIMDMG---YEREQVVQ 165
Query: 176 ALQAAYNNPERAVDYLYSGIP 196
AL+A++NNP+RAV+YL +GIP
Sbjct: 166 ALRASFNNPDRAVEYLLTGIP 186
>gi|164660784|ref|XP_001731515.1| hypothetical protein MGL_1698 [Malassezia globosa CBS 7966]
gi|159105415|gb|EDP44301.1| hypothetical protein MGL_1698 [Malassezia globosa CBS 7966]
Length = 406
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 90/268 (33%), Positives = 139/268 (51%), Gaps = 41/268 (15%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
MKL VK+L G +F I V+PSD+V +VK+ I+ QG +P Q LI++GK+L DE +
Sbjct: 1 MKLLVKSLAGGNFHIDVEPSDSVGSVKQKIQASQG---HPAENQKLIYSGKILADEKNMG 57
Query: 61 DNKVSEDGFLVVMLS--KSKTLGSAGASSAQ----------PAHTTPPTTAPSSNSTPPQ 108
+ ++ E FLVVM+S K+K + S SA A T + ++ + P
Sbjct: 58 EYEIKEKDFLVVMVSKPKAKKVESDKPVSADSSAQAAPAPASAAATGESALSATPAKPKA 117
Query: 109 EASVPPPAPTPSIPASNVTSNVTA--------ANANSDTYGQAASNLVAGNDLEQTIQQI 160
E+ P A TP+ A +SN+ + NA+ T + ++G +LE + I
Sbjct: 118 ESPATPAASTPAEAAGASSSNLPSTPAPSNGPTNASGSTGSLQTGSFLSGAELETAVSSI 177
Query: 161 MDMGGGTWDKETVTRALQAAYNNPERAVDYLYSGIP-ETAEVAVPVAHFPASQAAETGAA 219
++MG + KE V RA++ ++NNP+RAV+YL +G+P ETA PA+ A
Sbjct: 178 IEMG---FSKEDVQRAMRMSFNNPDRAVEYLMNGLPDETAAAPSRTTGVPATPA------ 228
Query: 220 GAAPVSGVPNSSPLNMFPQETLSGAPAG 247
P+ +P+ QET +GA AG
Sbjct: 229 -------TPSPAPVTSM-QETPTGAGAG 248
>gi|256082440|ref|XP_002577464.1| uv excision repair protein rad23 [Schistosoma mansoni]
gi|84657284|gb|ABC60029.1| DNA repair protein [Schistosoma mansoni]
gi|360044630|emb|CCD82178.1| putative uv excision repair protein rad23 [Schistosoma mansoni]
Length = 354
Score = 112 bits (281), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 74/201 (36%), Positives = 113/201 (56%), Gaps = 12/201 (5%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
MK+T KTL F + Q D + VKK IE G + + Q LIH+GKV++D +L
Sbjct: 1 MKVTFKTLMQQTFVLDFQEDDLIGDVKKKIEAKWGSE-FDARTQKLIHSGKVMEDSKSLK 59
Query: 61 DNKVSEDGFLVVML----SKSKTLGSAGASSAQPAHTTPPTTAPSSNSTPPQEASVPPPA 116
D KV+E GF+VVM SK T ++ + + P T PTT S P EA+ P +
Sbjct: 60 DYKVTESGFVVVMSVSKPSKDTTKEASASVQSNPTGETKPTTDKKS---PVTEANEAPSS 116
Query: 117 PTPSIPASNVTSNVTAANANSDTYGQAASNLVAGNDLEQTIQQIMDMGGGTWDKETVTRA 176
+ SN+ + TA ++ + T G S+LV G + E+ ++++M MG +++ V +A
Sbjct: 117 KPDANSQSNLPTVTTAPSSATSTLGFGESSLVTGENFERVVKELMSMG---FERSLVIQA 173
Query: 177 LQAAYNNPERAVDYLYSG-IP 196
++A +NNP+RA +YL SG IP
Sbjct: 174 MRAGFNNPDRAFEYLSSGNIP 194
>gi|387914414|gb|AFK10816.1| UV excision repair protein RAD23-like protein [Callorhinchus milii]
Length = 378
Score = 112 bits (281), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 90/293 (30%), Positives = 136/293 (46%), Gaps = 56/293 (19%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++TVKTL+ F I+++P V A+K+ IE +GKD +P Q LI+ GK+L DET +
Sbjct: 1 MRITVKTLQQQSFHIQIEPELPVKALKEKIETEKGKDAFPVAGQKLIYAGKILDDETPII 60
Query: 61 DNKVSEDGFLVVMLSKSKTLGSAGASSAQPAHTTPPTTAPSSNSTPPQEASVPPPAPTPS 120
+ K+ E+ F+VVM++K K+ S A++ QPA + P A ++ + + P A T +
Sbjct: 61 EYKIDEEKFVVVMITKPKSSPSVQAAATQPATPSTPQPATTTPTV---PPASSPTATTET 117
Query: 121 IPASNVTSNVTAANA----------------------------NSDTYGQAASNLVAGND 152
+P +N ++ + A S + A S LV G
Sbjct: 118 VP-TNTSNELNTAEKPTEKSDETSTSTSTSPSASTIRTSGGAQGSSLFDVATSALVTGQQ 176
Query: 153 LEQTIQQIMDMGGGTWDKETVTRALQAAYNNPERAVDYLYSGIP-ETAEVAVPVAHFPAS 211
E + +I MG + +E V AL+A++NNP+RAV+YL GIP E A +V
Sbjct: 177 YETMVTEITSMG---YSREQVVAALKASFNNPDRAVEYLLMGIPGERARSSVNNPQQTTG 233
Query: 212 QAAETGAAGAAPVSGVPNSSPLNMFPQETLSGAPAGGLGSLDFLRNNQQVWSL 264
A A AAP AP L+FLRN Q +
Sbjct: 234 TACTGSAQPAAP--------------------APTSRENPLEFLRNQPQFHQM 266
>gi|213512547|ref|NP_001135284.1| UV excision repair protein RAD23 homolog A [Salmo salar]
gi|209156014|gb|ACI34239.1| UV excision repair protein RAD23 homolog A [Salmo salar]
Length = 387
Score = 112 bits (281), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 82/237 (34%), Positives = 125/237 (52%), Gaps = 34/237 (14%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++T+KTL+ F+I + +TV +K+ IE+ +GKD +P Q LI+ GK+L D+T L
Sbjct: 1 MQITLKTLQQQTFKIDIDAEETVKTLKEKIENEKGKDGFPVAGQKLIYAGKILNDDTALK 60
Query: 61 DNKVSEDGFLVVMLSKSKTL-------GSAGASSAQPAHTTPPTTAPSSNSTPPQEASVP 113
+ K+ E F+VVM++K K G+ +++ T P A S + PP E P
Sbjct: 61 EYKIDEKNFVVVMVAKPKVAPAAAQPSGATTTTTSSTTVPTVPAAALSGSDNPP-EGGKP 119
Query: 114 PPAPTP------SIPASNVTSNVTAANANSDTYGQAASNLVAGNDLEQTIQQIMDMGGGT 167
P S PAS TS+ + AN + + +A S LV G E + ++M MG
Sbjct: 120 EDKPAEERPSNTSAPASTPTSS-SGLLANVNMFEEATSALVTGQSYENMVTEMMLMG--- 175
Query: 168 WDKETVTRALQAAYNNPERAVDYLYSGIPETAEVAVPVAHFPASQAAETGAAGAAPV 224
+++E V +L+A++NNP+RAV+YL +GIP A E G A A PV
Sbjct: 176 YEREQVVASLRASFNNPDRAVEYLLTGIP----------------AGEEGHASADPV 216
>gi|167998815|ref|XP_001752113.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162696508|gb|EDQ82846.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 76
Score = 112 bits (280), Expect = 2e-22, Method: Composition-based stats.
Identities = 51/76 (67%), Positives = 65/76 (85%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
MK++VKTLKG+HF+++V + V +VK+ IE QGKD +PC QQLLIH GKVLKDETT+A
Sbjct: 1 MKISVKTLKGNHFDLQVAEDELVSSVKRKIEGSQGKDAFPCAQQLLIHQGKVLKDETTMA 60
Query: 61 DNKVSEDGFLVVMLSK 76
DNKV+E+GFLVVML+K
Sbjct: 61 DNKVAENGFLVVMLTK 76
>gi|328788815|ref|XP_623093.2| PREDICTED: UV excision repair protein RAD23 homolog B-like isoform
2 [Apis mellifera]
Length = 364
Score = 112 bits (279), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 68/201 (33%), Positives = 111/201 (55%), Gaps = 18/201 (8%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M +T+K L+ F + + PS TV +K+ IE +G +P Q LI+ GK+L D+ LA
Sbjct: 1 MIITLKNLQQQTFTVEIDPSQTVRDLKQKIEIQKG---FPAKYQKLIYAGKILTDDHPLA 57
Query: 61 DNKVSEDGFLVVMLSKSKTLGSAGASSAQPAHTTPPTTAPSSNSTPPQEASVPPPAPTPS 120
+ + E F+VVM++K KT G ++ HT+ SS ++ V P+ P+
Sbjct: 58 EYNIDEKKFIVVMVTKLKT--GNGHTTTDEEHTSADNKEESSTTS-----LVAQPSSNPT 110
Query: 121 IPASNVTSNVTAANANSDTY-----GQAASNLVAGNDLEQTIQQIMDMGGGTWDKETVTR 175
+ ++ N+ + + T GQA S L+ G D + I+DMG +++E V +
Sbjct: 111 VQGASSPGNIIQEQSEASTTAGCVGGQAESALLMGEDYNTMVNNIVDMG---YEREQVEQ 167
Query: 176 ALQAAYNNPERAVDYLYSGIP 196
AL+A++NNP+RAV+YL +GIP
Sbjct: 168 ALRASFNNPDRAVEYLLTGIP 188
>gi|443714722|gb|ELU07000.1| hypothetical protein CAPTEDRAFT_148202, partial [Capitella teleta]
Length = 320
Score = 112 bits (279), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 75/219 (34%), Positives = 118/219 (53%), Gaps = 26/219 (11%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M +T+KTL+ F+I ++ S+ V+A+K+ I +G D Y Q LI+ GK+L D+ ++
Sbjct: 1 MIITLKTLQQQTFKIEIEESEKVLALKERIAQEKGGD-YAADNQKLIYAGKILDDKQCIS 59
Query: 61 DNKVSEDGFLVVMLSKSKTLGSAGASSAQPAH------------------TTPPTTAPSS 102
+ K+ E F+V+M++K+K A A+PA PT P++
Sbjct: 60 EYKIQESNFVVIMVTKAKPKAPEKAPEAKPAEQPTPSQPAATPAAASSEPAATPTETPAA 119
Query: 103 NSTP--PQEASVPPPAPTPSIPASNVTSNVTAANANSDTYG--QAASNLVAGNDLEQTIQ 158
P P A+ + S PA+ V + T A+A A S LV G EQT+Q
Sbjct: 120 VDQPMSPAPAAATTESMETSSPATEVVTEATPADAPPAAVQPESAESTLVTGESYEQTVQ 179
Query: 159 QIMDMGGGTWDKETVTRALQAAYNNPERAVDYLYSGIPE 197
++M MG + ++ V RAL+A++NNP+RAV+YL SGIP+
Sbjct: 180 EMMSMG---FARDMVVRALRASFNNPDRAVEYLLSGIPD 215
>gi|328861399|gb|EGG10502.1| hypothetical protein MELLADRAFT_93497 [Melampsora larici-populina
98AG31]
Length = 416
Score = 111 bits (277), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 73/202 (36%), Positives = 110/202 (54%), Gaps = 15/202 (7%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
MKLT KTL+ F + V+PS T+ +K I++ QG + Q +I +GK+L DE ++
Sbjct: 1 MKLTFKTLQKQQFVLDVEPSITIANLKLQIKESQG---FEPELQKIIFSGKILSDEKLIS 57
Query: 61 DNKVSEDGFLVVMLSKSKTLGSAGASSAQPAHTTPPTTAPSSNSTPPQEASVPPPAPTPS 120
D +V E F V+ML K KT + A S A T+AP STP + PP TPS
Sbjct: 58 DIEVKEKDFFVIMLMKPKTAPTVPAPSTSAAAVPSSTSAPVQTSTP----AAPPATSTPS 113
Query: 121 IPASNVTSNVTAANANSDTYGQAAS------NLVAGNDLEQTIQQIMDMGGGTWDKETVT 174
+ + T A D+ A + + G+ L+ TI +I++ G + +E V
Sbjct: 114 ANPESTPATTTEPQAAVDSSTPAVAPGTQDPGFLTGSGLQTTIDEIVN--GMGFPREEVV 171
Query: 175 RALQAAYNNPERAVDYLYSGIP 196
+A++AA+NNP+RAV+YL +GIP
Sbjct: 172 KAMRAAFNNPDRAVEYLMTGIP 193
>gi|432871920|ref|XP_004072043.1| PREDICTED: UV excision repair protein RAD23 homolog B-like [Oryzias
latipes]
Length = 421
Score = 111 bits (277), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 75/216 (34%), Positives = 114/216 (52%), Gaps = 34/216 (15%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++T+KTL+ +I + P TV A+K+ IE +GKDN+P Q LI+ GK+L+D+T +
Sbjct: 1 MQITLKTLQQQTIQIEIDPEQTVKALKEKIEAERGKDNFPVSGQKLIYAGKILQDDTPIK 60
Query: 61 DNKVSEDGFLVVMLSKSKTLGSAGASSAQPAHTTPPTTAPSSNSTP-------------- 106
D K+ E F+VVM+SK+K + A + + + +S + P
Sbjct: 61 DYKIDEKNFVVVMVSKAKPAATTSAPAPEAPKPPAQDSGSTSTAAPPSNPPAAPTPAAVP 120
Query: 107 ------PQEASVPPPAPTPSIPASNVTSNVTAANANSDTYGQAASNLVAGNDLEQTIQQI 160
QE S A P PAS+ + N D A+S LV G + E + +I
Sbjct: 121 IPPEEAKQEQSA--EATEPQQPASS-----SGGNQGLD----ASSALVTGAEYEAMLTEI 169
Query: 161 MDMGGGTWDKETVTRALQAAYNNPERAVDYLYSGIP 196
M MG +++E V AL+A++NNP RAV+YL +GIP
Sbjct: 170 MSMG---YERERVVAALRASFNNPHRAVEYLLTGIP 202
>gi|148225642|ref|NP_001089431.1| uncharacterized protein LOC734481 [Xenopus laevis]
gi|63101219|gb|AAH94481.1| MGC115064 protein [Xenopus laevis]
Length = 419
Score = 111 bits (277), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 79/242 (32%), Positives = 121/242 (50%), Gaps = 47/242 (19%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++T+KTL+ F+I + +TV A+K+ IE +GKD +P Q LI+ GK+L D+ L
Sbjct: 1 MQITLKTLQQQTFKIDIDAEETVKALKEKIELEKGKDAFPVAGQKLIYAGKILNDDIALK 60
Query: 61 DNKVSEDGFLVVMLSKSKTLGSAGASSAQPAHTTPP------------TTAPSSNSTPPQ 108
+ K+ E F+VVM++K K G++ +S+ PA + P T P + P
Sbjct: 61 EYKIDEKNFVVVMVTKPK--GASCSSAPSPATSQPASAASPAPASPPLTYTPIARQNAPI 118
Query: 109 EASVP---PPAPTPSIPASN----------------------VTSNVTAANANSDT---- 139
VP P PTP+ P S V+ + T + +D+
Sbjct: 119 PLPVPFSLPTVPTPAAPTSEPSTTTAPEEEKPEEKTVSPPETVSPSSTECSLPTDSSRPS 178
Query: 140 -YGQAASNLVAGNDLEQTIQQIMDMGGGTWDKETVTRALQAAYNNPERAVDYLYSGIPET 198
+ A S LV G E + +IM MG +++E V AL+A++NNP+RAV+YL GIP
Sbjct: 179 IFEDATSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIPSD 235
Query: 199 AE 200
E
Sbjct: 236 RE 237
>gi|380027731|ref|XP_003697572.1| PREDICTED: LOW QUALITY PROTEIN: UV excision repair protein RAD23
homolog B-like [Apis florea]
Length = 364
Score = 111 bits (277), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 67/201 (33%), Positives = 110/201 (54%), Gaps = 18/201 (8%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M +T+K L+ F + + PS TV +K+ IE +G +P Q LI+ GK+L D+ LA
Sbjct: 1 MIITLKNLQQQTFTVEIDPSQTVRDLKQKIETQKG---FPAKYQKLIYAGKILTDDHPLA 57
Query: 61 DNKVSEDGFLVVMLSKSKTLGSAGASSAQPAHTTPPTTAPSSNSTPPQEASVPPPAPTPS 120
+ + E F+VVM++K KT G ++ HT+ SS + + V P+ P+
Sbjct: 58 EYNIDEKKFIVVMVTKLKT--GNGHTTTDEEHTSADNKEESSTT-----SLVAQPSSNPT 110
Query: 121 IPASNVTSNVTAANANSDTY-----GQAASNLVAGNDLEQTIQQIMDMGGGTWDKETVTR 175
+ ++ N+ + + T GQA L+ G D + I+DMG +++E V +
Sbjct: 111 VQGASSPGNIIQEQSEASTTAGCVGGQAEXALLMGEDYNTMVNNIVDMG---YEREQVEQ 167
Query: 176 ALQAAYNNPERAVDYLYSGIP 196
AL+A++NNP+RAV+YL +GIP
Sbjct: 168 ALRASFNNPDRAVEYLLTGIP 188
>gi|224091533|ref|XP_002188381.1| PREDICTED: UV excision repair protein RAD23 homolog B [Taeniopygia
guttata]
Length = 400
Score = 110 bits (275), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 75/231 (32%), Positives = 114/231 (49%), Gaps = 43/231 (18%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++T+KTL+ F I + P +TV A+K+ IE +GKD +P Q LI+ GK+L DET L
Sbjct: 1 MQITLKTLQQQTFRIDIDPEETVKALKEKIESERGKDAFPVAGQKLIYAGKILNDETALK 60
Query: 61 DNKVSEDGFLVVMLSKSKTLGSAGASSAQPAHTTPPTTAPSSNSTPPQEASVP------- 113
+ K+ E F+VVM++K K A A QP++ T + ++ T
Sbjct: 61 EYKIDEKNFVVVMVTKPK----AAAGVTQPSNATSTVGSTTAAPTAVAAPIPVPAPVPAP 116
Query: 114 ------------PPAPTPS----------------IPASNVTSNVTAANANSDTYGQAAS 145
PAP + + S++ S T + S+ + A S
Sbjct: 117 VPPPPAPDAVACEPAPVSTPKEEKPEEKPPEAPAAVSPSSIDS-TTGDTSRSNLFEDAIS 175
Query: 146 NLVAGNDLEQTIQQIMDMGGGTWDKETVTRALQAAYNNPERAVDYLYSGIP 196
LV G E + +IM MG +++E V AL+A++NNP+RAV+YL GIP
Sbjct: 176 ALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIP 223
>gi|449266094|gb|EMC77210.1| UV excision repair protein RAD23 like protein B, partial [Columba
livia]
Length = 378
Score = 110 bits (274), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 88/279 (31%), Positives = 130/279 (46%), Gaps = 61/279 (21%)
Query: 23 VMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVMLSKSKTLGS 82
V A+K+ IE +GKD +P Q LI+ GK+L D+T L + K+ E F+VVM++K K
Sbjct: 1 VKALKEKIESERGKDAFPVAGQKLIYAGKILNDDTALKEYKIDEKNFVVVMVTKPKAAAG 60
Query: 83 AGASS------------------------------------AQPAHTTPPTTAPSSNSTP 106
A S + A + P TAP P
Sbjct: 61 ATQQSDATSAVSSTTAAAVTVTAPVPTAAPVPDPVPPPPAPDEVACESAPVTAPEEEK-P 119
Query: 107 PQEASVPPPAPTPSIPASNVTSNVTAANANSDTYGQAASNLVAGNDLEQTIQQIMDMGGG 166
++ PP A +PS T + T + S+ + A S LV G E + +I+ MG
Sbjct: 120 AEKTPEPPAAISPS-----STESTTGDTSRSNLFEDAISALVTGQSYENMVTEIISMG-- 172
Query: 167 TWDKETVTRALQAAYNNPERAVDYLYSGIP-ETAEVAVPVAHFPASQAAETGAAGAAPVS 225
+++E V AL+A++NNP+RAV+YL GIP + VA P SQAA TGA+ ++ V+
Sbjct: 173 -YEREQVIAALRASFNNPDRAVEYLLMGIPGDNQAVAEP------SQAASTGASQSSTVA 225
Query: 226 GVPNSSPLNMFPQETLSGAPAGGLGSLDFLRNNQQVWSL 264
+ P+ +L G P L+FLRN Q +
Sbjct: 226 TSVATIPMTT---SSLGGHP------LEFLRNQPQFQQM 255
>gi|325187409|emb|CCA21947.1| UV excision repair protein RAD23 putative [Albugo laibachii Nc14]
Length = 420
Score = 110 bits (274), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 96/266 (36%), Positives = 137/266 (51%), Gaps = 50/266 (18%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
MKLTVKTL+G+ F I +P+DTV VK I++ Q +P QQ LIH GK+LKD+T L+
Sbjct: 1 MKLTVKTLQGNAFSIEAEPTDTVAVVKTKIQETQ---EFPAIQQKLIHAGKILKDDTALS 57
Query: 61 DNKVSEDGFLVVMLSKSK--TLGSAGASSAQPAHTTPPTTAPSSNSTPPQEASVPPPAPT 118
+ + E+ F+VVM+SK+K SA S+A T P PS+++ E S P +
Sbjct: 58 EYNIKENDFIVVMVSKAKGSRPTSALPSTATAQTPTVPPPVPSTSAVSSSETSTPLSVSS 117
Query: 119 PSIPASNVTSNVTAANANSDTYGQAASNLVAGNDLEQTIQQIMDMGGGTWDKETVTRALQ 178
+ P T+ T A+ +S T +S A N + Q+ DMG + +E V LQ
Sbjct: 118 STRP----TTEGTMASGSSGTSTTPSSTAEAAN-----VGQLCDMG---FPEEQVRSCLQ 165
Query: 179 AAYNNPERAVDYLYSGIPETAEVAVPVAHFPASQAAETGAAGAAPVSGVPNSSPLNMFPQ 238
AA+ NP+RAV+YL +GIPE + P +A AAP +G P++
Sbjct: 166 AAFGNPDRAVEYLMNGIPEN--LVNPT------------SAAAAPTTGGPSA-------- 203
Query: 239 ETLSGAPAGGLGSLDFLRNNQQVWSL 264
GSL+ LRN+ Q S
Sbjct: 204 -----------GSLEQLRNHPQFASF 218
>gi|242015323|ref|XP_002428309.1| UV excision repair protein rhp23, putative [Pediculus humanus
corporis]
gi|212512899|gb|EEB15571.1| UV excision repair protein rhp23, putative [Pediculus humanus
corporis]
Length = 156
Score = 109 bits (273), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 72/177 (40%), Positives = 102/177 (57%), Gaps = 26/177 (14%)
Query: 23 VMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVMLSKSKTLGS 82
V +K+ IE +GKD YP Q LI+ GK+L DET L++ K+ E F+VVM++K K
Sbjct: 1 VKVLKEKIEAEKGKD-YPAVNQRLIYAGKILTDETPLSEYKIDEKKFIVVMVTKPK---- 55
Query: 83 AGASSAQPAHTTPPTTAPSSNSTPPQEASVPPPAPTPSIPASNVTSNVTAANANSD---T 139
P T A SS+STP P S+ TSN A+ N + +
Sbjct: 56 ----------LPPATHAGSSDSTP-----TPGTGDGGEKQTSDTTSNEPPASENVNSGAS 100
Query: 140 YGQAASNLVAGNDLEQTIQQIMDMGGGTWDKETVTRALQAAYNNPERAVDYLYSGIP 196
+GQA S L+ G++ Q+++ IMDMG + KE V RAL+A++NNP+RAV+YL +GIP
Sbjct: 101 FGQAESALLMGDEYNQSLRNIMDMG---YPKEQVERALRASFNNPDRAVEYLLNGIP 154
>gi|387017982|gb|AFJ51109.1| UV excision repair protein RAD23 homolog B-like [Crotalus
adamanteus]
Length = 409
Score = 109 bits (273), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 77/232 (33%), Positives = 121/232 (52%), Gaps = 39/232 (16%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++T+KTL+ F+I + +TV A+K+ IE +GKD +P Q LI+ GK+L D+T L
Sbjct: 1 MQITLKTLQQQTFKIDIDCGETVKALKEKIELEKGKDAFPVAGQKLIYAGKILNDDTALN 60
Query: 61 DNKVSEDGFLVVMLSKSKTLGSAGASSAQPAH-------TTPPTTAPSSNSTP-PQEASV 112
+ K+ E F+VVM++K K + ++AQ ++ +T P P TP P + SV
Sbjct: 61 EYKIDEKNFVVVMVTKPKAAAAPSPTTAQQSNDTTTTVTSTTPAAVPKLVPTPVPAQVSV 120
Query: 113 --------------------------PPPAPTPSIPASNVTSNVTAAN--ANSDTYGQAA 144
P P + PA++ TS ++ + S+ + A
Sbjct: 121 SAPTASTPAAAAACESAPVSATVEEKPADKPVETPPATSPTSTESSIGDISRSNLFEDAT 180
Query: 145 SNLVAGNDLEQTIQQIMDMGGGTWDKETVTRALQAAYNNPERAVDYLYSGIP 196
S LV G E + +IM MG +++E V AL+A++NNP+RAV+YL GIP
Sbjct: 181 SALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIP 229
>gi|148226348|ref|NP_001082494.1| RAD23 homolog B [Xenopus laevis]
gi|28277263|gb|AAH44089.1| MGC53561 protein [Xenopus laevis]
gi|28278600|gb|AAH44115.1| MGC53561 protein [Xenopus laevis]
Length = 412
Score = 109 bits (273), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 83/245 (33%), Positives = 125/245 (51%), Gaps = 53/245 (21%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++T+KTL+ F+I + +TV A+K+ IE +G D +P Q LI+ GK+L D+T L
Sbjct: 1 MQITLKTLQQQTFKIDIDAEETVKALKEKIELEKGNDAFPVAGQKLIYAGKILNDDTALK 60
Query: 61 DNKVSEDGFLVVMLSKSKTLGSAGASSAQPAHT-----------------TP-------- 95
+ K+ E F+VVM++K K G+A S+ PA + TP
Sbjct: 61 EYKIDEKNFVVVMVTKPK--GAACPSAPSPAVSQPVSAAAPAPASPPLTYTPIARQNAPI 118
Query: 96 ----------------PTTAPSSNSTP----PQEASVPPPAPTPSIPASNVTSNVTAANA 135
PT+ S+ + P P+E +V PP T S P+S S T ++
Sbjct: 119 PLPVPLPLPTVSAPAAPTSELSTTTAPKEEKPEEKTVSPPE-TES-PSSTECSLPTDSSR 176
Query: 136 NSDTYGQAASNLVAGNDLEQTIQQIMDMGGGTWDKETVTRALQAAYNNPERAVDYLYSGI 195
S + A S LV G E + +IM MG +++E V AL+A++NNP+RAV+YL GI
Sbjct: 177 PS-LFEDATSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGI 232
Query: 196 PETAE 200
P +E
Sbjct: 233 PSDSE 237
>gi|307189318|gb|EFN73749.1| UV excision repair protein RAD23-like protein B [Camponotus
floridanus]
Length = 363
Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 70/198 (35%), Positives = 108/198 (54%), Gaps = 15/198 (7%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M +T+K L+ F I + S TV +K+ IE +G +P Q LI+ GK+L DE L
Sbjct: 1 MIITLKNLQQQTFTIEIDSSQTVKDLKEKIETQKG---FPAEHQKLIYAGKILADEQPLT 57
Query: 61 DNKVSEDGFLVVMLSKSKTLGSAGASSAQPAHTTPPTTAPSSNSTPPQEASVPPPAPTPS 120
+ + E F+VVM++K K + S Q A +T +S++T P+ P+
Sbjct: 58 EYNIDEKKFIVVMVTKPKAGATPKTSEEQRAESTDNKEESTSSAT-------TQPSSNPT 110
Query: 121 IPAS-NVTSNVTAANAN-SDTYGQAASNLVAGNDLEQTIQQIMDMGGGTWDKETVTRALQ 178
+ + SNV +A + GQA S L+ G D + IMDMG +++E V +AL+
Sbjct: 111 VQETLQAASNVQEQSAVPTPAAGQAESALLMGEDYNTMVNNIMDMG---YEREQVVQALR 167
Query: 179 AAYNNPERAVDYLYSGIP 196
A++NNP+RAV+YL +GIP
Sbjct: 168 ASFNNPDRAVEYLLTGIP 185
>gi|350404552|ref|XP_003487142.1| PREDICTED: UV excision repair protein RAD23 homolog B-like [Bombus
impatiens]
Length = 365
Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 73/201 (36%), Positives = 114/201 (56%), Gaps = 17/201 (8%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M +T+K L+ F + + PS TV +K+ IE +G +P Q LI+ GK+L D+ LA
Sbjct: 1 MIITLKNLQQQTFTVEIDPSQTVKDLKQKIETQKG---FPAKYQKLIYAGKILTDDHPLA 57
Query: 61 DNKVSEDGFLVVMLSKSKTLGSAGASSAQPAHTTPPTTAPSSNSTPPQEASVPPPAPTPS 120
+ + E F+VVM++K KT G+ ++ + T SS ++ SV P+ P+
Sbjct: 58 EYNIDEKKFIVVMVTKLKT-GNGHTTTEEEHTTNTDNKEESSTTS-----SVAQPSSNPT 111
Query: 121 IP-ASNVTSNVTAANANSDTY----GQAASNLVAGNDLEQTIQQIMDMGGGTWDKETVTR 175
+ ASN T+ V + S T GQA S L+ G D + I+DMG +++E V +
Sbjct: 112 VQGASNPTNTVQEQSEASTTAGCVGGQAESALLMGEDYNTMVNNIVDMG---YEREQVEQ 168
Query: 176 ALQAAYNNPERAVDYLYSGIP 196
AL+A++NNP+RAV+YL +GIP
Sbjct: 169 ALRASFNNPDRAVEYLLTGIP 189
>gi|428161911|gb|EKX31145.1| Rad23 nucleotide excision repair protein binds to XPC [Guillardia
theta CCMP2712]
Length = 378
Score = 108 bits (271), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 74/206 (35%), Positives = 116/206 (56%), Gaps = 20/206 (9%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
MK+ VKT+ G E+ +P++T+ +K IE P + +IH G+VL+D ++
Sbjct: 1 MKVIVKTMAGLQTEMEFEPTNTLADLKTKIEGQMSSLGGPVNK--IIHMGRVLEDGKPIS 58
Query: 61 DNKVSEDGFLVVMLSKSKTLGSAGASSAQPAHTTPPTTAPSSNSTPPQEASVPP------ 114
+ V++ V+M+SK K A QP+ P+ AP ++ + P
Sbjct: 59 EYGVADGNTFVIMVSKKKP-----AQEPQPSSEPAPSAAPKPSTPATEAPPAAPAVQPSQ 113
Query: 115 PAPTPSIPASNVTSNVTAANANSDTYGQAASNLVAGNDLEQTIQQIMDMGGGTWDKETVT 174
PAP PS PA + S A A++ +Y +AS L+ G LE T+ QIM+MG +++E V
Sbjct: 114 PAP-PSTPAQSAPST---APASTTSYDASASALLTGESLEATVMQIMEMG---FEREQVM 166
Query: 175 RALQAAYNNPERAVDYLYSGIPETAE 200
+AL+AA+NNP+RAV+YL +GIPE A+
Sbjct: 167 KALRAAFNNPDRAVEYLMTGIPEGAD 192
>gi|283945482|ref|NP_001164652.1| nuclear excision repair protein rad23 [Bombyx mori]
gi|217331039|gb|ACK38234.1| nuclear excision repair protein Rad23 [Bombyx mori]
Length = 324
Score = 108 bits (271), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 74/200 (37%), Positives = 109/200 (54%), Gaps = 27/200 (13%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M +T+KTL+ F+I + P +TV A+K IE +GKD + Q LI+ GK+L D+ +
Sbjct: 1 MLVTLKTLQQQTFQIEIDPEETVKALKLKIEVEKGKD-FVADHQRLIYAGKILLDDNKIN 59
Query: 61 DNKVSEDGFLVVMLSKSKTLGSAGASSAQPAHTTPPTT--APSSNSTPPQEASVPPPAPT 118
+ E F+V+M++K K S +QP T+ P + S++S + +VPP
Sbjct: 60 SYNIDEKKFIVIMVTKPKV------SESQPTSTSIPEAGESASTDSGDAKPKTVPPEEVV 113
Query: 119 PSIPASNVTSNVTAA-NANSDTYGQAASNLVAGNDLEQTIQQIMDMGGGTWDKETVTRAL 177
P + T VT N SD +LE TIQ IMDMG +D+ V +AL
Sbjct: 114 K--PTTAETERVTETPNTTSDA------------ELEATIQSIMDMG---YDRPQVEQAL 156
Query: 178 QAAYNNPERAVDYLYSGIPE 197
+A++NN ERAV+YL +GIPE
Sbjct: 157 RASFNNRERAVEYLITGIPE 176
>gi|51230604|ref|NP_001003739.1| UV excision repair protein RAD23 homolog A [Danio rerio]
gi|50925991|gb|AAH79526.1| RAD23 homolog A (S. cerevisiae) [Danio rerio]
gi|182889188|gb|AAI64761.1| Rad23a protein [Danio rerio]
Length = 362
Score = 108 bits (271), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 85/272 (31%), Positives = 138/272 (50%), Gaps = 40/272 (14%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++T+KTL+ +I + TV A+K+ IE +G+D++P Q LI+ GK+L+D+T +
Sbjct: 1 MQITLKTLQQQTIQIDIDDEQTVKALKEKIEAEKGRDSFPVAGQKLIYAGKILQDDTPIK 60
Query: 61 DNKVSEDGFLVVMLSKSKTLGSAGASS-----AQPAHTTPPTTAPSSNSTPPQEASVPPP 115
+ K+ E F+VVM+SK+K+ G++ A S + ++ ++ P P A++P
Sbjct: 61 EYKIDEKNFVVVMVSKTKSPGTSAAPSEPSRSMAASSSSSSSSPPPPPPPAPAPAAIPFT 120
Query: 116 APTPSIPASNVTSNVTAANANSDTYGQ---AASNLVAGNDLEQTIQQIMDMGGGTWDKET 172
P S ++ + +D G+ A+S LV G + + + IM MG ++++
Sbjct: 121 DECPRDDPPATVSPASSPDGGTDVVGEGEDASSTLVTGQEYDAMLTNIMSMG---YERDK 177
Query: 173 VTRALQAAYNNPERAVDYLYSGIPETAEVAVPVAHFPASQAAETGAAGAAPVSGVPNSSP 232
V AL+A+YNNP RAV+YL +GIP VPV ET A A
Sbjct: 178 VVAALKASYNNPHRAVEYLLNGIP-----TVPV--------QETNPAPA----------- 213
Query: 233 LNMFPQETLSGAPAGGLGSLDFLRNNQQVWSL 264
P +T P G L+FLR+ Q S+
Sbjct: 214 --QLPTDT---QPTEGENPLEFLRSQPQFQSM 240
>gi|164665690|gb|ABY66299.1| DNA repair protein RAD23 [Brassica napus]
Length = 327
Score = 108 bits (270), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 76/200 (38%), Positives = 102/200 (51%), Gaps = 45/200 (22%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
MK+ VKTLKG FEI+V D+V VKKNIE V G +Q+LIH GKVL+DETT+
Sbjct: 1 MKIFVKTLKGDRFEIQVNLEDSVADVKKNIETVMG---VTAAEQMLIHKGKVLEDETTME 57
Query: 61 DNKVSEDGFLVVMLSKSKTLGSAGASSAQPAHTTPPTTAPSSNSTPPQEASVPPPAPTPS 120
N+VSE + VM K H + T+ S++ P +A+ PS
Sbjct: 58 ANEVSEKSIIAVMKRK---------------HASTVTSTSSASLKPQVQAA------HPS 96
Query: 121 IPASNVTSNVTAANANSDTYGQAASNLVAGNDLEQTIQQIMDMGGGTWDKETVTRALQAA 180
ASN+T + E IQQI++M GTW +E V AL A
Sbjct: 97 STASNMTYESIS---------------------ESGIQQILEMVSGTWSREAVAYALYFA 135
Query: 181 YNNPERAVDYLYSGIPETAE 200
N+ ++AV+YLY G+PE +E
Sbjct: 136 SNDLDKAVEYLYFGLPEQSE 155
>gi|410901673|ref|XP_003964320.1| PREDICTED: UV excision repair protein RAD23 homolog A-like
[Takifugu rubripes]
Length = 367
Score = 108 bits (270), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 90/282 (31%), Positives = 142/282 (50%), Gaps = 45/282 (15%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++T+KTL+ +I + P TV A+K+ IE +GKDN+P Q LI+ GK+L+D+T +
Sbjct: 1 MQITLKTLQQQTIQIEIDPEQTVKALKEKIEAERGKDNFPVSCQKLIYAGKILQDDTPIK 60
Query: 61 DNKVSEDGFLVVMLSKSK---------------TLGSAGASSAQPAHTTPPTTAPSSNST 105
D K+ E F+VVM+SK+K L +G++S T P TA + +S
Sbjct: 61 DYKIDEKNFVVVMVSKAKPSTAATPPASEPPKPPLQDSGSTSTAAPAATVPATASTPSSA 120
Query: 106 PPQEASVPPPAPTPSI--PASNVTSNVTAANANSDTYG-QAASNLVAGNDLEQTIQQIMD 162
P + P + P++ +T A+++ + G A+S LV G + E + +I+
Sbjct: 121 PTATPAAAPVPSEEAKEEPSAAITEPQQPASSSDGSQGLDASSALVTGAEYEAMLTEIIS 180
Query: 163 MGGGTWDKETVTRALQAAYNNPERAVDYLYSGIPETAEVAVPVAHFPASQAAETGAAGAA 222
MG +++E V AL+A++NNP RAV+YL +GI P+S E+ A
Sbjct: 181 MG---YERERVVAALRASFNNPHRAVEYLLTGI-------------PSSPVQESNPPVQA 224
Query: 223 PVSGVPNSSPLNMFPQETLSGAPAGGLGSLDFLRNNQQVWSL 264
P + +P SP +P G L FLRN Q +
Sbjct: 225 P-APLPTESP----------ASPPEGENPLAFLRNQPQFLHM 255
>gi|327278100|ref|XP_003223800.1| PREDICTED: UV excision repair protein RAD23 homolog B-like [Anolis
carolinensis]
Length = 425
Score = 108 bits (270), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 78/236 (33%), Positives = 117/236 (49%), Gaps = 44/236 (18%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++T+KTL+ F+I + P +TV A+K+ IE +GKD +P G Q LI+ GK+L D+T L
Sbjct: 1 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVGGQKLIYAGKILNDDTALK 60
Query: 61 DNKVSEDGFLVVMLSKSKTLGSAGASSAQPAHTT-------------------------- 94
+ K+ E F+VVM++K K + S +
Sbjct: 61 EYKIDEKNFVVVMVTKPKAAAAPAPSPTTTQQSNDTTTTVSSSTIAAAAPKPAPVTAPAP 120
Query: 95 ---------PPTTA-----PSSNSTPPQEASVPPPAPTPSIPASNVTSNVTAANANSDTY 140
PPT A P+ S+P +E P TP+ S T + T + S+ +
Sbjct: 121 ALVSTPVADPPTPAAVTCEPAPVSSPVEEKVAEKPIETPA-ATSTSTDSTTGDLSRSNLF 179
Query: 141 GQAASNLVAGNDLEQTIQQIMDMGGGTWDKETVTRALQAAYNNPERAVDYLYSGIP 196
A S LV G E + +IM MG +++E V AL+A++NNP+RAV+YL GIP
Sbjct: 180 EDATSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIP 232
>gi|256082442|ref|XP_002577465.1| uv excision repair protein rad23 [Schistosoma mansoni]
gi|360044631|emb|CCD82179.1| putative uv excision repair protein rad23 [Schistosoma mansoni]
Length = 341
Score = 108 bits (269), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 74/201 (36%), Positives = 108/201 (53%), Gaps = 25/201 (12%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
MK+T KTL F + Q D + VKK IE G + + Q LIH+GKV++D +L
Sbjct: 1 MKVTFKTLMQQTFVLDFQEDDLIGDVKKKIEAKWGSE-FDARTQKLIHSGKVMEDSKSLK 59
Query: 61 DNKVSEDGFLVVML----SKSKTLGSAGASSAQPAHTTPPTTAPSSNSTPPQEASVPPPA 116
D KV+E GF+VVM SK T ++ + + P T PTT S T EA
Sbjct: 60 DYKVTESGFVVVMSVSKPSKDTTKEASASVQSNPTGETKPTTDKKSPVTEANEA------ 113
Query: 117 PTPSIPASNVTSNVTAANANSDTYGQAASNLVAGNDLEQTIQQIMDMGGGTWDKETVTRA 176
PSI TA ++ + T G S+LV G + E+ ++++M MG +++ V +A
Sbjct: 114 --PSI--------TTAPSSATSTLGFGESSLVTGENFERVVKELMSMG---FERSLVIQA 160
Query: 177 LQAAYNNPERAVDYLYSG-IP 196
++A +NNP+RA +YL SG IP
Sbjct: 161 MRAGFNNPDRAFEYLSSGNIP 181
>gi|47205078|emb|CAF91196.1| unnamed protein product [Tetraodon nigroviridis]
Length = 320
Score = 107 bits (268), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 66/196 (33%), Positives = 106/196 (54%), Gaps = 39/196 (19%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++T+KTL+ +I + P TV A+K+ IE +GKDN+P Q LI+ GK+L+D+T +
Sbjct: 1 MQITLKTLQQQTIQIEIDPEQTVKALKEKIEAERGKDNFPVSGQKLIYAGKILQDDTPIK 60
Query: 61 DNKVSEDGFLVVMLSKSKTLGSAGASSAQPAHTTPPTTAPSSNSTPPQEASVPPPAPTPS 120
+ K+ E F+VVM+SK AG + +P ++ P SS
Sbjct: 61 EYKIDERNFVVVMVSKV----GAGNQTHRPTVSSRPLAFCSS------------------ 98
Query: 121 IPASNVTSNVTAANANSDTYGQAASNLVAGNDLEQTIQQIMDMGGGTWDKETVTRALQAA 180
S+ + + A++A LV G + E + +I+ MG +++E V AL+A+
Sbjct: 99 ---SDGSQGLDASSA-----------LVTGAEYEAMLTEIISMG---YERERVVAALRAS 141
Query: 181 YNNPERAVDYLYSGIP 196
+NNP RAV+YL +GIP
Sbjct: 142 FNNPHRAVEYLLTGIP 157
>gi|332222431|ref|XP_003260373.1| PREDICTED: UV excision repair protein RAD23 homolog B isoform 2
[Nomascus leucogenys]
Length = 388
Score = 107 bits (268), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 77/236 (32%), Positives = 112/236 (47%), Gaps = 49/236 (20%)
Query: 23 VMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVMLSKSKTLGS 82
V A+K+ IE +GKD +P Q LI+ GK+L D+T L + K+ E F+VVM++K K + +
Sbjct: 2 VKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALKEYKIDEKNFVVVMVTKPKAVST 61
Query: 83 AGASSAQ---------------------------------PAHTTPPTTAPSSNSTP--- 106
++ Q PA TP + SS P
Sbjct: 62 PAPATTQQSAPASTTAVTSSTATTVAQAPTPVPALAPTSTPASITPASVTASSEPAPASA 121
Query: 107 -PQEASVPPPAPTPSIPASNVTSNVTAANANSDTYGQAASNLVAGNDLEQTIQQIMDMGG 165
QE PA TP + T + + ++ S+ + A S LV G E + +IM MG
Sbjct: 122 TKQEKPAEKPAETPVATSPTATDSTSGDSSRSNLFEDATSALVTGQSYENMVTEIMSMG- 180
Query: 166 GTWDKETVTRALQAAYNNPERAVDYLYSGIP---ETAEVAVPVAHFPASQAAETGA 218
+++E V AL+A++NNP+RAV+YL GIP E+ V P QAA TGA
Sbjct: 181 --YEREQVIAALRASFNNPDRAVEYLLMGIPGDRESQAVVDP------PQAASTGA 228
>gi|388580050|gb|EIM20368.1| UV excision repair protein Rad23 [Wallemia sebi CBS 633.66]
Length = 336
Score = 107 bits (268), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 78/247 (31%), Positives = 120/247 (48%), Gaps = 36/247 (14%)
Query: 2 KLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLAD 61
++T+KTL+ F++ V+ SDT+ +K+ IE QG + Q LI +GK+L D+ T+
Sbjct: 3 EVTIKTLQQKVFKVVVEDSDTIATLKQKIEADQG---FAVNTQKLIFSGKILADDRTIES 59
Query: 62 NKVSEDGFLVVMLSKSKTLGSAGASSAQPAHTTPPTTAPSSNSTPPQEASVPPPAPTPSI 121
++ E FLVVM+SK K P TP EA V PA
Sbjct: 60 LQIKEKDFLVVMVSKPK-----------PQPATPKKD----------EAKVEQPAQKSEQ 98
Query: 122 PASNVTSNVTAANANSDTYGQAASNLVAGNDLEQTIQQIMDMGGGTWDKETVTRALQAAY 181
P T A+S T Q +NL G++LE + +++MG +D+ V +A++A++
Sbjct: 99 PEQPEQPQQTQQPASSSTPSQPGNNLAMGSELETAVSNMVEMG---FDRAQVMKAMRASF 155
Query: 182 NNPERAVDYLYSGIPETAEVAVPVAHFPASQAAETGAAGAAPVSGVPNSSPLNMFPQETL 241
NNPERAV+YL +GIP+ H + +E + P +PLN+F
Sbjct: 156 NNPERAVEYLMTGIPQ---------HLQQPEQSEQPQQQSEQQPNQPTGAPLNLFDAARQ 206
Query: 242 SGAPAGG 248
+PA G
Sbjct: 207 QSSPAAG 213
>gi|218190702|gb|EEC73129.1| hypothetical protein OsI_07141 [Oryza sativa Indica Group]
Length = 242
Score = 107 bits (267), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 47/70 (67%), Positives = 59/70 (84%)
Query: 136 NSDTYGQAASNLVAGNDLEQTIQQIMDMGGGTWDKETVTRALQAAYNNPERAVDYLYSGI 195
+D YGQAASNLVAG++LE T+Q I++MGGG WD++TV RAL AAYNNPERAV+YLY+G+
Sbjct: 157 EADIYGQAASNLVAGSNLEGTVQSILEMGGGAWDRDTVMRALGAAYNNPERAVEYLYTGL 216
Query: 196 PETAEVAVPV 205
PE AE + V
Sbjct: 217 PEQAEASAVV 226
>gi|397479272|ref|XP_003810949.1| PREDICTED: UV excision repair protein RAD23 homolog B-like isoform
3 [Pan paniscus]
Length = 403
Score = 107 bits (267), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 82/258 (31%), Positives = 119/258 (46%), Gaps = 55/258 (21%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M L K + GS V+ A+K+ IE +GKD +P Q LI+ GK+L D+T L
Sbjct: 1 MSLKKKKVSGSVCRREVK------ALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALK 54
Query: 61 DNKVSEDGFLVVMLSKSKTLGSAGASSAQ------------------------------- 89
+ K+ E F+VVM++K K + + ++ Q
Sbjct: 55 EYKIDEKNFVVVMVTKPKAVSTPAPATTQQSAPASTTAVTSSTTTTVAQAPTPVPALAPT 114
Query: 90 --PAHTTPPTTAPSSNSTP----PQEASVPPPAPTPSIPASNVTSNVTAANANSDTYGQA 143
PA TP + SS P QE PA TP + T + + ++ S+ + A
Sbjct: 115 STPASITPASATASSEPAPASAAKQEKPAEKPAETPVATSPTATDSTSGDSSRSNLFEDA 174
Query: 144 ASNLVAGNDLEQTIQQIMDMGGGTWDKETVTRALQAAYNNPERAVDYLYSGIP---ETAE 200
S LV G E + +IM MG +++E V AL+A++NNP+RAV+YL GIP E+
Sbjct: 175 TSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIPGDRESQA 231
Query: 201 VAVPVAHFPASQAAETGA 218
V P QAA TGA
Sbjct: 232 VVDP------PQAASTGA 243
>gi|221045766|dbj|BAH14560.1| unnamed protein product [Homo sapiens]
Length = 388
Score = 107 bits (267), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 77/236 (32%), Positives = 112/236 (47%), Gaps = 49/236 (20%)
Query: 23 VMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVMLSKSKTLGS 82
V A+K+ IE +GKD +P Q LI+ GK+L D+T L + K+ E F+VVM++K K + +
Sbjct: 2 VKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALKEYKIDEKNFVVVMVTKPKAVST 61
Query: 83 AGASSAQ---------------------------------PAHTTPPTTAPSSNSTP--- 106
++ Q PA TP + SS P
Sbjct: 62 PAPATTQQSAPASTTAVTSSTTTTVAQAPTPVPALAPTSTPASITPASATASSEPAPASA 121
Query: 107 -PQEASVPPPAPTPSIPASNVTSNVTAANANSDTYGQAASNLVAGNDLEQTIQQIMDMGG 165
QE PA TP + T + + ++ S+ + A S LV G E + +IM MG
Sbjct: 122 AKQEKPAEKPAETPVATSPTATDSTSGDSSRSNLFEDATSALVTGQSYENMVTEIMSMG- 180
Query: 166 GTWDKETVTRALQAAYNNPERAVDYLYSGIP---ETAEVAVPVAHFPASQAAETGA 218
+++E V AL+A++NNP+RAV+YL GIP E+ V P QAA TGA
Sbjct: 181 --YEREQVIAALRASFNNPDRAVEYLLMGIPGDRESQAVVDP------PQAASTGA 228
>gi|347800662|ref|NP_001231642.1| UV excision repair protein RAD23 homolog B isoform 2 [Homo sapiens]
gi|397479270|ref|XP_003810948.1| PREDICTED: UV excision repair protein RAD23 homolog B-like isoform
2 [Pan paniscus]
gi|426362615|ref|XP_004048453.1| PREDICTED: UV excision repair protein RAD23 homolog B-like isoform
2 [Gorilla gorilla gorilla]
gi|221042046|dbj|BAH12700.1| unnamed protein product [Homo sapiens]
Length = 388
Score = 107 bits (267), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 77/236 (32%), Positives = 112/236 (47%), Gaps = 49/236 (20%)
Query: 23 VMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVMLSKSKTLGS 82
V A+K+ IE +GKD +P Q LI+ GK+L D+T L + K+ E F+VVM++K K + +
Sbjct: 2 VKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALKEYKIDEKNFVVVMVTKPKAVST 61
Query: 83 AGASSAQ---------------------------------PAHTTPPTTAPSSNSTP--- 106
++ Q PA TP + SS P
Sbjct: 62 PAPATTQQSAPASTTAVTSSTTTTVAQAPTPVPALAPTSTPASITPASATASSEPAPASA 121
Query: 107 -PQEASVPPPAPTPSIPASNVTSNVTAANANSDTYGQAASNLVAGNDLEQTIQQIMDMGG 165
QE PA TP + T + + ++ S+ + A S LV G E + +IM MG
Sbjct: 122 AKQEKPAEKPAETPVATSPTATDSTSGDSSRSNLFEDATSALVTGQSYENMVTEIMSMG- 180
Query: 166 GTWDKETVTRALQAAYNNPERAVDYLYSGIP---ETAEVAVPVAHFPASQAAETGA 218
+++E V AL+A++NNP+RAV+YL GIP E+ V P QAA TGA
Sbjct: 181 --YEREQVIAALRASFNNPDRAVEYLLMGIPGDRESQAVVDP------PQAASTGA 228
>gi|347658978|ref|NP_001231638.1| UV excision repair protein RAD23 homolog B [Pan troglodytes]
gi|343961243|dbj|BAK62211.1| UV excision repair protein RAD23 homolog B [Pan troglodytes]
Length = 388
Score = 107 bits (267), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 77/236 (32%), Positives = 112/236 (47%), Gaps = 49/236 (20%)
Query: 23 VMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVMLSKSKTLGS 82
V A+K+ IE +GKD +P Q LI+ GK+L D+T L + K+ E F+VVM++K K + +
Sbjct: 2 VKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALKEYKIDEKNFVVVMVTKPKAVST 61
Query: 83 AGASSAQ---------------------------------PAHTTPPTTAPSSNSTP--- 106
++ Q PA TP + SS P
Sbjct: 62 PAPATTQQSAPASTTAVTCSTTTTVAQAPIPVPALAPTSTPASITPASATASSEPAPASA 121
Query: 107 -PQEASVPPPAPTPSIPASNVTSNVTAANANSDTYGQAASNLVAGNDLEQTIQQIMDMGG 165
QE PA TP + T + + ++ S+ + A S LV G E + +IM MG
Sbjct: 122 AKQEKPAEKPAETPVATSPTATDSTSGDSSRSNLFEDATSALVTGQSYENMVTEIMSMG- 180
Query: 166 GTWDKETVTRALQAAYNNPERAVDYLYSGIP---ETAEVAVPVAHFPASQAAETGA 218
+++E V AL+A++NNP+RAV+YL GIP E+ V P QAA TGA
Sbjct: 181 --YEREQVIAALRASFNNPDRAVEYLLMGIPGDRESQAVVDP------PQAASTGA 228
>gi|355753132|gb|EHH57178.1| UV excision repair protein RAD23-like protein B, partial [Macaca
fascicularis]
Length = 387
Score = 107 bits (266), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 77/236 (32%), Positives = 112/236 (47%), Gaps = 49/236 (20%)
Query: 23 VMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVMLSKSKTLGS 82
V A+K+ IE +GKD +P Q LI+ GK+L D+T L + K+ E F+VVM++K K + +
Sbjct: 1 VKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALKEYKIDEKNFVVVMVTKPKAVST 60
Query: 83 AGASSAQ---------------------------------PAHTTPPTTAPSSNSTP--- 106
++ Q PA TP + SS P
Sbjct: 61 PAPATTQQSAPASTTAITSSTATTVAQAPTPVPALAPTSTPASITPASATASSEPAPASA 120
Query: 107 -PQEASVPPPAPTPSIPASNVTSNVTAANANSDTYGQAASNLVAGNDLEQTIQQIMDMGG 165
QE PA TP + T + + ++ S+ + A S LV G E + +IM MG
Sbjct: 121 TKQEKPAEKPAETPVATSPTATDSTSGDSSRSNLFEDATSALVTGQSYENMVTEIMSMG- 179
Query: 166 GTWDKETVTRALQAAYNNPERAVDYLYSGIP---ETAEVAVPVAHFPASQAAETGA 218
+++E V AL+A++NNP+RAV+YL GIP E+ V P QAA TGA
Sbjct: 180 --YEREQVIAALRASFNNPDRAVEYLLMGIPGDRESQAVVDP------PQAASTGA 227
>gi|226470142|emb|CAX70352.1| UV excision repair protein RAD23 homolog B [Schistosoma japonicum]
gi|226489693|emb|CAX74997.1| UV excision repair protein RAD23 homolog B [Schistosoma japonicum]
gi|226489695|emb|CAX74998.1| UV excision repair protein RAD23 homolog B [Schistosoma japonicum]
gi|226489697|emb|CAX74999.1| UV excision repair protein RAD23 homolog B [Schistosoma japonicum]
Length = 350
Score = 107 bits (266), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 77/197 (39%), Positives = 108/197 (54%), Gaps = 13/197 (6%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
MK+T KTLK F + +Q D V VKK IE +G + + Q LIH+GKV++D +L
Sbjct: 1 MKVTFKTLKQQTFVLDLQEDDLVGDVKKKIEAERGSE-FDASTQKLIHSGKVMEDSKSLK 59
Query: 61 DNKVSEDGFLVVM-LSKSKTLGSAGASSAQPAHTTPPTTAPSSNSTPPQE--ASVPPPAP 117
D KV++ GF+VVM +SK GSA A PA PTT E +S P
Sbjct: 60 DYKVTDSGFVVVMSVSKPAKEGSASA-PGNPAGEGRPTTDKKIPDVDVTESPSSKPDANS 118
Query: 118 TPSIPASNVTSNVTAANANSDTYGQAASNLVAGNDLEQTIQQIMDMGGGTWDKETVTRAL 177
PS+P T + T T G S+LV G + E+ +Q+++ MG ++K V RA+
Sbjct: 119 QPSLPTVTTTQSTTTN-----TLGFGESSLVTGENFERVVQELVSMG---FEKPLVIRAM 170
Query: 178 QAAYNNPERAVDYLYSG 194
+A +NNP+RA +YL SG
Sbjct: 171 RAGFNNPDRAFEYLSSG 187
>gi|91085045|ref|XP_974357.1| PREDICTED: similar to putative RAD23-like B [Tribolium castaneum]
gi|270009030|gb|EFA05478.1| hypothetical protein TcasGA2_TC015662 [Tribolium castaneum]
Length = 334
Score = 107 bits (266), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 74/200 (37%), Positives = 113/200 (56%), Gaps = 23/200 (11%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
MK+TV+ L +F I ++PS TV +K+ IE +GKD Y Q LI+ GK+LKDE L+
Sbjct: 1 MKITVRNLYQKNFIIHIEPSKTVKDLKQQIEAEKGKD-YRWDYQRLIYRGKILKDEAPLS 59
Query: 61 DNKVSEDGFLVVMLSKSKTLGSAGASSAQPAHTTPPTTAPSSNSTPPQEASVPPPAPTPS 120
+ + ED F+V+M+SK + + A+S + T P T ++ + A P
Sbjct: 60 EYNIDEDKFIVIMVSKPDSGTTEVANSGDNSATQPSATPAAAPAPAAPAAP------APV 113
Query: 121 IPASNVTSNVTAANANSDTYGQAASNLVAGNDLEQTIQQIMDMGGGTWDKETVTRALQAA 180
PASN++S +A S L+ G + E +Q I+DMG + ++ V +AL+A+
Sbjct: 114 APASNLSS-------------EAESALLMGEEYENMVQNIVDMG---YPRDQVEQALRAS 157
Query: 181 YNNPERAVDYLYSGIPETAE 200
YNNP+RAV+YL +GIP E
Sbjct: 158 YNNPDRAVEYLINGIPAMGE 177
>gi|115438372|ref|XP_001218049.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
gi|114188864|gb|EAU30564.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
Length = 377
Score = 107 bits (266), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 99/293 (33%), Positives = 146/293 (49%), Gaps = 47/293 (16%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
MKLT K LK FEI +PS+TV VK+ I ++G + Q LI++GK+LKDE T+
Sbjct: 1 MKLTFKDLKQEKFEIDAEPSETVGQVKERICQLKG---WEVPQLKLIYSGKILKDENTIE 57
Query: 61 DNKVSEDGFLVVMLSKSKTLGSAGASSAQPAHTTPPTTAPSSNSTPPQEASVPPPAPTPS 120
KV E GF+V M+SK KT S+ A S P +TP A S+ + PP A +
Sbjct: 58 SYKVEEKGFIVYMVSKPKTSSSSAAPSQGP--STPSRAAASTPAAPPAPAPATSAPAQAA 115
Query: 121 IPASNVTSNVTAANANSDTYGQAASNLVAGNDLEQTIQQIMDMGGGTWDKETVTRALQAA 180
PA+ + A+ + S +A L+ G + E + Q+ MG + ++ + RA++AA
Sbjct: 116 PPATPSPAATGASQSGSAFNDPSA--LMTGRENENAVAQMESMG---FARDDINRAMRAA 170
Query: 181 YNNPERAVDYLYSGIPETAEVAV----------------PVAHFPASQAAETGAAGAAPV 224
+ NP+RAV+YL SGIP+ + P P+ ++ T A G PV
Sbjct: 171 FFNPDRAVEYLLSGIPDNIQQEQQQQQQQQQAAAAAAASPTPQAPSGESGLTTAGGDEPV 230
Query: 225 SGVPNSSPLNMFP-------QETLSGAPAGG--LGSLDFLRNN---QQVWSLL 265
N+F Q+T +GG L +LDFLR+N QQ+ L+
Sbjct: 231 ---------NLFEAAAQAGTQDTGRAGRSGGEALPNLDFLRHNPHFQQLRQLV 274
>gi|430811680|emb|CCJ30877.1| unnamed protein product [Pneumocystis jirovecii]
Length = 1394
Score = 106 bits (265), Expect = 8e-21, Method: Composition-based stats.
Identities = 69/198 (34%), Positives = 110/198 (55%), Gaps = 26/198 (13%)
Query: 1 MKLTVKTLKGSHFEI-RVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTL 59
MKLT K LK F I V P T++ VK+ I++VQG D Q LI++GK+L D T+
Sbjct: 1040 MKLTFKDLKQQKFTIDNVDPRCTILQVKEMIQEVQGHD---LKHQKLIYSGKILLDSNTV 1096
Query: 60 ADNKVSEDGFLVVMLSKSKTLGSAGASSAQPAHTTPPTTAPSSNSTPPQEASVPPPAPTP 119
+ E F+V M+ K K + P+ + + S+N + P+ ++ P P
Sbjct: 1097 ESYDIKEKDFIVCMVQKPKQV---------PSASIVAESTVSTNQSDPKASA--PETSLP 1145
Query: 120 SIPASNVTSNVTAANANSDTYGQAASNLVAGNDLEQTIQQIMDMGGGTWDKETVTRALQA 179
S+P ++V+S+ S+T+ S LV G + I+ +M+MG +++ V A++A
Sbjct: 1146 SVPGTSVSSS-------SETFNDPNS-LVVGLLCDTAIKNMMEMG---YERTQVENAMRA 1194
Query: 180 AYNNPERAVDYLYSGIPE 197
A+NNP+RAV+YL +GIPE
Sbjct: 1195 AFNNPDRAVEYLLTGIPE 1212
>gi|332853400|ref|XP_003316200.1| PREDICTED: UV excision repair protein RAD23 homolog A [Pan
troglodytes]
Length = 463
Score = 106 bits (265), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 70/190 (36%), Positives = 106/190 (55%), Gaps = 19/190 (10%)
Query: 23 VMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVMLSKSKTLGS 82
V +K+ IE +G+D +P Q LI+ GK+L D+ + D ++ E F+VVM++K+K
Sbjct: 126 VKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDYRIDEKNFVVVMVTKTK---- 181
Query: 83 AGASSAQPAHTTPPTTAPSSNSTPPQEA---SVPPPA----PTPSIPASNVTS-----NV 130
AG ++ P +P SS S PP S PPPA +PS ++ TS
Sbjct: 182 AGQGTSAPPEASPTAAPESSTSFPPAPTSGMSHPPPAAREDKSPSEESAPTTSPESVSGS 241
Query: 131 TAANANSDTYGQAASNLVAGNDLEQTIQQIMDMGGGTWDKETVTRALQAAYNNPERAVDY 190
++ +S AAS LV G++ E + +IM MG +++E V AL+A+YNNP RAV+Y
Sbjct: 242 VPSSGSSGREEDAASTLVTGSEYETMLTEIMSMG---YERERVVAALRASYNNPHRAVEY 298
Query: 191 LYSGIPETAE 200
L +GIP + E
Sbjct: 299 LLTGIPGSPE 308
>gi|355567554|gb|EHH23895.1| UV excision repair protein RAD23-like protein B, partial [Macaca
mulatta]
Length = 387
Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 76/236 (32%), Positives = 113/236 (47%), Gaps = 49/236 (20%)
Query: 23 VMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVMLSKSKTLGS 82
V A+K+ IE +GKD +P Q LI+ GK+L D+T L + K+ E F+VVM++K K + +
Sbjct: 1 VKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALKEYKIDEKNFVVVMVTKPKAVST 60
Query: 83 AGASSAQ---------------------------------PAHTTPPTTAPSSNSTP--- 106
++ Q PA TP + SS P
Sbjct: 61 PAPATTQQSAPASTTAITSSTATTVAQAPTPVPALAPTSTPASITPASATASSEPAPASA 120
Query: 107 -PQEASVPPPAPTPSIPASNVTSNVTAANANSDTYGQAASNLVAGNDLEQTIQQIMDMGG 165
Q+ + PA TP + T + + ++ S+ + A S LV G E + +IM MG
Sbjct: 121 TKQKKAAEKPAETPVATSPTATDSTSGDSSRSNLFEDATSALVTGQSYENMVTEIMSMG- 179
Query: 166 GTWDKETVTRALQAAYNNPERAVDYLYSGIP---ETAEVAVPVAHFPASQAAETGA 218
+++E V AL+A++NNP+RAV+YL GIP E+ V P QAA TGA
Sbjct: 180 --YEREQVIAALRASFNNPDRAVEYLLMGIPGDRESQAVVDP------PQAASTGA 227
>gi|402224231|gb|EJU04294.1| UV excision repair protein Rad23 [Dacryopinax sp. DJM-731 SS1]
Length = 411
Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 75/197 (38%), Positives = 109/197 (55%), Gaps = 6/197 (3%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
MKLT KTL+ F + +PSDTV+ +K I Q ++P QQ +I++GK+L D T+
Sbjct: 1 MKLTFKTLQQKQFTLDAEPSDTVLDLKHRISQDQ---DFPVEQQKIIYSGKILSDTQTVE 57
Query: 61 DNKVSEDGFLVVMLSKSKTLGSAGASSAQPAHTTPPTTAPSSNSTPPQEASVPPPAPTPS 120
K+ E FLVVM+SK K +A S P + SS++ P + A VP PA +
Sbjct: 58 ACKIKEKDFLVVMVSKPKAAPAATTSKTATPEPAKPVASTSSSAVPSEPAVVPAPAEPVA 117
Query: 121 IPASNVTSNVTAANANSDTYGQAASNLVAGNDLEQTIQQIMDMGGGTWDKETVTRALQAA 180
PA + A A + S G L+ ++ +M+MG +++ V RAL+AA
Sbjct: 118 APAPVPAATEQPAAAAAAPAWGDQSAFFTGAALQGAVENMMEMG---FERAQVMRALKAA 174
Query: 181 YNNPERAVDYLYSGIPE 197
YNNP+RAV+YL SGIP+
Sbjct: 175 YNNPDRAVEYLMSGIPD 191
>gi|340716523|ref|XP_003396747.1| PREDICTED: UV excision repair protein RAD23 homolog B-like isoform
3 [Bombus terrestris]
Length = 337
Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 68/201 (33%), Positives = 111/201 (55%), Gaps = 18/201 (8%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M +T+K L+ F + + PS TV +K+ IE +G +P Q LI+ GK+L D+ LA
Sbjct: 1 MIITLKNLQQQTFTVEIDPSQTVKDLKQKIETQKG---FPAKYQKLIYAGKILTDDHPLA 57
Query: 61 DNKVSEDGFLVVMLSKSKTLGSAGASSAQPAHTTPPTTAPSSNSTPPQEASVPPPAPTPS 120
+ + E F+VVM++K KT G ++ + T SS ++ SV P+ P+
Sbjct: 58 EYNIDEKKFIVVMVTKLKT--GNGHTTEEEHTTNTDNKEESSTTS-----SVAQPSSNPT 110
Query: 121 IPASNVTSNVTAANANSDTY-----GQAASNLVAGNDLEQTIQQIMDMGGGTWDKETVTR 175
+ ++ +N + + T GQA S L+ G D + I+DMG +++E V +
Sbjct: 111 VQGASNPTNTAQEQSEASTTAGCVGGQAESALLMGEDYNTMVNNIVDMG---YEREQVEQ 167
Query: 176 ALQAAYNNPERAVDYLYSGIP 196
AL+A++NNP+RAV+YL +GIP
Sbjct: 168 ALRASFNNPDRAVEYLLTGIP 188
>gi|448512641|ref|XP_003866779.1| Rad23 protein [Candida orthopsilosis Co 90-125]
gi|380351117|emb|CCG21340.1| Rad23 protein [Candida orthopsilosis Co 90-125]
Length = 402
Score = 106 bits (264), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 75/201 (37%), Positives = 111/201 (55%), Gaps = 13/201 (6%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
MK+ K K I V+ +DTV + K + Q KD Q L+++GKVL+D+ TL
Sbjct: 1 MKIIFKDFKKQTIPIEVELTDTVSSAKDKL--AQEKDCV-SSQIKLVYSGKVLQDDKTLE 57
Query: 61 DNKVSEDGFLVVMLSKSKTLGSAGASSAQPAHTTPPTTAPSSNSTPPQEASVPPPAPTPS 120
+ K+ E ++ M+SK+K + S+ PA T +A + +ST + A P AP P
Sbjct: 58 ECKLKEGASIIFMISKAKETPTPVPGSSVPA-TEATASASTGDSTKVEPAGSTPTAPAP- 115
Query: 121 IPASNVTSNVTAANANSDTYGQAA---SNLVAGNDLEQTIQQIMDMGGGTWDKETVTRAL 177
AS +N A A++ + G A S G++ E TIQ IM+MG +++ V AL
Sbjct: 116 --ASETATNAEGATASTSSTGPAETSESTFALGSERETTIQNIMEMG---YERPQVEAAL 170
Query: 178 QAAYNNPERAVDYLYSGIPET 198
+AA+NNP RAV+YL SGIPE+
Sbjct: 171 RAAFNNPHRAVEYLISGIPES 191
>gi|348518002|ref|XP_003446521.1| PREDICTED: UV excision repair protein RAD23 homolog A-like
[Oreochromis niloticus]
Length = 365
Score = 106 bits (264), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 79/209 (37%), Positives = 118/209 (56%), Gaps = 18/209 (8%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++T+KTL+ +I + P TV A+K+ IE +GKDN+P Q LI+ GK+L+D+T +
Sbjct: 1 MQITLKTLQQQTIQIEIDPEQTVKALKEKIEAERGKDNFPVSGQKLIYAGKILQDDTPIK 60
Query: 61 DNKVSEDGFLVVMLSKSKTLGSAGASSAQPAHTTPPTTAPSSNS-------TPPQEASVP 113
D K+ E F+VVM+SK+K +A S ++ PP S S P A P
Sbjct: 61 DYKIDEKNFVVVMVSKAKPAAAASPSVSEAPK--PPVQDSGSTSTAAPTTNPTPAPAPAP 118
Query: 114 PPAPTPSIPASNVTSNVTA-----ANANSDTYG-QAASNLVAGNDLEQTIQQIMDMGGGT 167
P PS A +S V A+++ + G A+S LV G + E + +IM MG
Sbjct: 119 AAVPIPSGEAKEESSAVATEPQQPASSSGGSQGLDASSTLVTGAEYEAMLTEIMSMG--- 175
Query: 168 WDKETVTRALQAAYNNPERAVDYLYSGIP 196
+++E V AL+A++NNP RAV+YL +GIP
Sbjct: 176 YERERVVAALRASFNNPHRAVEYLLTGIP 204
>gi|340716525|ref|XP_003396748.1| PREDICTED: UV excision repair protein RAD23 homolog B-like isoform
4 [Bombus terrestris]
Length = 357
Score = 106 bits (264), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 68/201 (33%), Positives = 111/201 (55%), Gaps = 18/201 (8%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M +T+K L+ F + + PS TV +K+ IE +G +P Q LI+ GK+L D+ LA
Sbjct: 1 MIITLKNLQQQTFTVEIDPSQTVKDLKQKIETQKG---FPAKYQKLIYAGKILTDDHPLA 57
Query: 61 DNKVSEDGFLVVMLSKSKTLGSAGASSAQPAHTTPPTTAPSSNSTPPQEASVPPPAPTPS 120
+ + E F+VVM++K KT G ++ + T SS ++ SV P+ P+
Sbjct: 58 EYNIDEKKFIVVMVTKLKT--GNGHTTEEEHTTNTDNKEESSTTS-----SVAQPSSNPT 110
Query: 121 IPASNVTSNVTAANANSDTY-----GQAASNLVAGNDLEQTIQQIMDMGGGTWDKETVTR 175
+ ++ +N + + T GQA S L+ G D + I+DMG +++E V +
Sbjct: 111 VQGASNPTNTAQEQSEASTTAGCVGGQAESALLMGEDYNTMVNNIVDMG---YEREQVEQ 167
Query: 176 ALQAAYNNPERAVDYLYSGIP 196
AL+A++NNP+RAV+YL +GIP
Sbjct: 168 ALRASFNNPDRAVEYLLTGIP 188
>gi|76156833|gb|AAX27952.2| SJCHGC06167 protein [Schistosoma japonicum]
Length = 231
Score = 106 bits (264), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 78/198 (39%), Positives = 110/198 (55%), Gaps = 15/198 (7%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
MK+T KTLK F + +Q D V VKK IE +G + + Q LIH+GKV++D +L
Sbjct: 1 MKVTFKTLKQQTFVLDLQEDDLVGDVKKKIEAERGSE-FDASTQKLIHSGKVMEDSKSLK 59
Query: 61 DNKVSEDGFLVVM-LSKSKTLGSAGASSAQPAHTTPPTT---APSSNSTPPQEASVPPPA 116
D KV++ GF+VVM +SK GSA A PA PTT P + T +S P
Sbjct: 60 DYKVTDSGFVVVMSVSKPAKEGSASA-PGNPAGEGRPTTDKKIPDVDVT-ESPSSKPDAN 117
Query: 117 PTPSIPASNVTSNVTAANANSDTYGQAASNLVAGNDLEQTIQQIMDMGGGTWDKETVTRA 176
PS+P T + T T G S+LV G + E+ +Q+++ MG ++K V RA
Sbjct: 118 SQPSLPTVTTTQSTTTN-----TLGFGESSLVTGENFERVVQELVSMG---FEKPLVIRA 169
Query: 177 LQAAYNNPERAVDYLYSG 194
++A +NNP+RA +YL SG
Sbjct: 170 MRAGFNNPDRAFEYLSSG 187
>gi|340716521|ref|XP_003396746.1| PREDICTED: UV excision repair protein RAD23 homolog B-like isoform
2 [Bombus terrestris]
Length = 348
Score = 106 bits (264), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 68/201 (33%), Positives = 111/201 (55%), Gaps = 18/201 (8%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M +T+K L+ F + + PS TV +K+ IE +G +P Q LI+ GK+L D+ LA
Sbjct: 1 MIITLKNLQQQTFTVEIDPSQTVKDLKQKIETQKG---FPAKYQKLIYAGKILTDDHPLA 57
Query: 61 DNKVSEDGFLVVMLSKSKTLGSAGASSAQPAHTTPPTTAPSSNSTPPQEASVPPPAPTPS 120
+ + E F+VVM++K KT G ++ + T SS ++ SV P+ P+
Sbjct: 58 EYNIDEKKFIVVMVTKLKT--GNGHTTEEEHTTNTDNKEESSTTS-----SVAQPSSNPT 110
Query: 121 IPASNVTSNVTAANANSDTY-----GQAASNLVAGNDLEQTIQQIMDMGGGTWDKETVTR 175
+ ++ +N + + T GQA S L+ G D + I+DMG +++E V +
Sbjct: 111 VQGASNPTNTAQEQSEASTTAGCVGGQAESALLMGEDYNTMVNNIVDMG---YEREQVEQ 167
Query: 176 ALQAAYNNPERAVDYLYSGIP 196
AL+A++NNP+RAV+YL +GIP
Sbjct: 168 ALRASFNNPDRAVEYLLTGIP 188
>gi|340716519|ref|XP_003396745.1| PREDICTED: UV excision repair protein RAD23 homolog B-like isoform
1 [Bombus terrestris]
Length = 364
Score = 106 bits (264), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 68/201 (33%), Positives = 111/201 (55%), Gaps = 18/201 (8%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M +T+K L+ F + + PS TV +K+ IE +G +P Q LI+ GK+L D+ LA
Sbjct: 1 MIITLKNLQQQTFTVEIDPSQTVKDLKQKIETQKG---FPAKYQKLIYAGKILTDDHPLA 57
Query: 61 DNKVSEDGFLVVMLSKSKTLGSAGASSAQPAHTTPPTTAPSSNSTPPQEASVPPPAPTPS 120
+ + E F+VVM++K KT G ++ + T SS ++ SV P+ P+
Sbjct: 58 EYNIDEKKFIVVMVTKLKT--GNGHTTEEEHTTNTDNKEESSTTS-----SVAQPSSNPT 110
Query: 121 IPASNVTSNVTAANANSDTY-----GQAASNLVAGNDLEQTIQQIMDMGGGTWDKETVTR 175
+ ++ +N + + T GQA S L+ G D + I+DMG +++E V +
Sbjct: 111 VQGASNPTNTAQEQSEASTTAGCVGGQAESALLMGEDYNTMVNNIVDMG---YEREQVEQ 167
Query: 176 ALQAAYNNPERAVDYLYSGIP 196
AL+A++NNP+RAV+YL +GIP
Sbjct: 168 ALRASFNNPDRAVEYLLTGIP 188
>gi|345777678|ref|XP_003431632.1| PREDICTED: UV excision repair protein RAD23 homolog B isoform 1
[Canis lupus familiaris]
Length = 385
Score = 105 bits (263), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 69/209 (33%), Positives = 104/209 (49%), Gaps = 38/209 (18%)
Query: 23 VMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVMLSKSKTLGS 82
V A+K+ IE +GKD +P Q LI+ GK+L D+T L + K+ E F+VVM++K K + +
Sbjct: 2 VKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALKEYKIDEKNFVVVMVTKPKAVTT 61
Query: 83 AGASSAQ--------------------------------PAHTTP-PTTA--PSSNSTPP 107
++ Q PA TP P T+ P+ S
Sbjct: 62 PAPATTQQSNPATTTTVSSSTAPTVVQAPAPPVLAPTPSPASVTPAPATSSEPAPTSVTQ 121
Query: 108 QEASVPPPAPTPSIPASNVTSNVTAANANSDTYGQAASNLVAGNDLEQTIQQIMDMGGGT 167
QE PA TP + T + + ++ S+ + A S LV G E + +IM MG
Sbjct: 122 QEKPAEKPAETPVATSPTATDSTSGDSSRSNLFEDATSALVTGQSYENMVTEIMSMG--- 178
Query: 168 WDKETVTRALQAAYNNPERAVDYLYSGIP 196
+++E V AL+A++NNP+RAV+YL GIP
Sbjct: 179 YEREQVIAALRASFNNPDRAVEYLLMGIP 207
>gi|357621015|gb|EHJ73001.1| nuclear excision repair protein rad23 [Danaus plexippus]
Length = 323
Score = 105 bits (263), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 74/199 (37%), Positives = 105/199 (52%), Gaps = 27/199 (13%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M LT+KTL+ F+I + P +TV A+K IE +GKD Y Q LI+ GK+L D+ L
Sbjct: 1 MLLTLKTLQQQTFQIEIDPQETVKALKLKIEVEKGKD-YAADNQRLIYAGKILLDDNKLH 59
Query: 61 DNKVSEDGFLVVMLSKSKTLGSAGAS--SAQPAHTTPPTTAPSSNSTPPQEASVPPPAPT 118
+ E F+V+M++K KT + AS SA A + T + S +E P PA
Sbjct: 60 TYNIDEKKFIVIMVTKPKTSDNQQASSTSAPEAGESASTESGDGKSKVVEEKPKPQPAAE 119
Query: 119 PSIPAS-NVTSNVTAANANSDTYGQAASNLVAGNDLEQTIQQIMDMGGGTWDKETVTRAL 177
P + VTSN D E T+Q IMDMG ++++ V +AL
Sbjct: 120 PERASEPPVTSNEP--------------------DFESTVQSIMDMG---YNRQQVEQAL 156
Query: 178 QAAYNNPERAVDYLYSGIP 196
+A++NN ERAV+YL +GIP
Sbjct: 157 RASFNNRERAVEYLITGIP 175
>gi|297703760|ref|XP_002828804.1| PREDICTED: UV excision repair protein RAD23 homolog A [Pongo
abelii]
Length = 485
Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 70/191 (36%), Positives = 109/191 (57%), Gaps = 21/191 (10%)
Query: 23 VMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVMLSKSKTLGS 82
V +K+ IE +G+D +P Q LI+ GK+L D+ + D ++ E F+VVM++K+K
Sbjct: 148 VKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDYRIDEKNFVVVMVTKTK---- 203
Query: 83 AGASSAQPAHTTPPTTAPSSNST----PPQEASVPPPA----PTPSIPASNVTS-----N 129
AG ++ P + PT AP S+++ P S PPPA +PS ++ TS
Sbjct: 204 AGQGTSAPPEAS-PTAAPESSTSFLPAPTSGMSHPPPAAREDKSPSEESAPTTSPESVSG 262
Query: 130 VTAANANSDTYGQAASNLVAGNDLEQTIQQIMDMGGGTWDKETVTRALQAAYNNPERAVD 189
++ +S AAS LV G++ E + +IM MG +++E V AL+A+YNNP RAV+
Sbjct: 263 SVPSSGSSGREEDAASTLVTGSEYETMLTEIMSMG---YERERVVAALRASYNNPHRAVE 319
Query: 190 YLYSGIPETAE 200
YL +GIP + E
Sbjct: 320 YLLTGIPGSPE 330
>gi|431918433|gb|ELK17657.1| UV excision repair protein RAD23 like protein B [Pteropus alecto]
Length = 439
Score = 105 bits (262), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 96/332 (28%), Positives = 143/332 (43%), Gaps = 82/332 (24%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDT-------------------------------VMAVKKN 29
M++T+KTL+ F+I + P +T V A+K+
Sbjct: 1 MQVTLKTLQQQTFKIDIDPEETHVQQKFSTLSEAPTLCPAPLFGLGTPTNSIIVKALKEK 60
Query: 30 IEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVMLSKSKTLGSAGASSAQ 89
IE +GKD +P Q LI+ GK+L D+T L + K+ E F+VVM++K K + + ++ Q
Sbjct: 61 IESEKGKDAFPVAGQKLIYAGKILNDDTALKEYKIDEKNFVVVMVTKPKAVTTPAPATTQ 120
Query: 90 ---------------PAHTTPPTTAPSSNSTP----------------------PQEASV 112
PA PT P+ TP QE
Sbjct: 121 QSNSATTTTVSSSTAPAVAQTPTPTPALAPTPTPASITPASTTASSEPAPASATKQENPA 180
Query: 113 PPPAPTPSIPASNVTSNVTAANANSDTYGQAASNLVAGNDLEQTIQQIMDMGGGTWDKET 172
PA TP + T + + ++ S+ + A S LV G E + +IM MG +++E
Sbjct: 181 EKPAETPVATSPTSTDSTSGDSSRSNLFEDATSALVTGQSYENMVTEIMSMG---YEREQ 237
Query: 173 VTRALQAAYNNPERAVDYLYSGIPETAEVAVPVAHFPASQAAETGAAGAAPVSGVPNSSP 232
V AL+A++NNP+RAV+YL GIP E V PA A+ AP S V ++
Sbjct: 238 VIAALRASFNNPDRAVEYLLMGIPGDRESQAVVDPPPA-------ASTGAPQSSVAAAAA 290
Query: 233 LNMFPQETLSGAPAGGLGSLDFLRNNQQVWSL 264
T S +GG L+FLRN Q +
Sbjct: 291 TTTATTTTTS---SGG-HPLEFLRNQPQFQQM 318
>gi|194913607|ref|XP_001982736.1| GG16385 [Drosophila erecta]
gi|190647952|gb|EDV45255.1| GG16385 [Drosophila erecta]
Length = 414
Score = 105 bits (262), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 69/212 (32%), Positives = 111/212 (52%), Gaps = 27/212 (12%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M +T+K L+ F I P TV+ +KK I D +G + Y +Q LI+ G +L D+ T+
Sbjct: 1 MIITIKNLQQQTFTIEFAPEKTVLELKKKIFDERGPE-YVAEKQKLIYAGVILTDDRTVD 59
Query: 61 DNKVSEDGFLVVMLSKS---------------KTLGSAGASSAQPAHTTPPTTAPSSNST 105
V + F+VVML++ K + + + + P + +P + +T
Sbjct: 60 SYNVDDKKFIVVMLTRDSSSSNPNQLSVKESDKLISTDDSKDSMPGEEANHSNSPCTKNT 119
Query: 106 PPQEASVPPPAPTPSIPASNVTSNVTAANANSDTYGQAASNLVAGNDLEQTIQQIMDMGG 165
E SV P TP + N+ ++ A+ S +A SNL+ G + QT+ +++MG
Sbjct: 120 ---EESVLPSETTP-LSTDNLIGDLAQASLQS----RAESNLLMGEEYNQTVLSMVEMG- 170
Query: 166 GTWDKETVTRALQAAYNNPERAVDYLYSGIPE 197
+ +E V RA+ A+YNNPERAV+YL +GIPE
Sbjct: 171 --YPREEVERAMAASYNNPERAVEYLINGIPE 200
>gi|71896193|ref|NP_001025578.1| RAD23 homolog B [Xenopus (Silurana) tropicalis]
gi|60551813|gb|AAH91020.1| rad23b protein [Xenopus (Silurana) tropicalis]
Length = 416
Score = 105 bits (262), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 77/246 (31%), Positives = 119/246 (48%), Gaps = 55/246 (22%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++T+KTL+ F+I + +TV A+K+ IE +GKD +P Q LI+ GK+L D+T L
Sbjct: 1 MQITLKTLQQQTFKIDIDGEETVKALKEKIELEKGKDAFPVAGQKLIYAGKILNDDTALK 60
Query: 61 DNKVSEDGFLVVMLSKSKTLGSAGASS---------------------------AQPAHT 93
+ K+ E F+VVM++K K G+A +S+ Q A
Sbjct: 61 EYKIDEKNFVVVMVTKPK--GAACSSTPTPAASQPASAAAPAPASPPLTYTPIARQNAPI 118
Query: 94 TPP--------------TTAPSSNSTPPQEASVPPPAPTPSIPASNVTSNVTAANANSDT 139
P T+ PS+ + P +E P P V+ + T + +D+
Sbjct: 119 PLPVPFSIPAVPAPAAPTSEPSTTTAPKEEK----PEEKTDSPQETVSPSSTECSLPTDS 174
Query: 140 -----YGQAASNLVAGNDLEQTIQQIMDMGGGTWDKETVTRALQAAYNNPERAVDYLYSG 194
+ A S LV G E + +IM MG +++E V AL+A++NNP+RAV+YL G
Sbjct: 175 SRPSLFEDATSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMG 231
Query: 195 IPETAE 200
IP E
Sbjct: 232 IPSDRE 237
>gi|301771238|ref|XP_002921030.1| PREDICTED: UV excision repair protein RAD23 homolog A-like
[Ailuropoda melanoleuca]
Length = 375
Score = 105 bits (261), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 84/254 (33%), Positives = 128/254 (50%), Gaps = 47/254 (18%)
Query: 23 VMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVMLSKSKTLGS 82
V +K+ IE +G+D +P Q LI+ GK+L D+ + D ++ E F+VVM++K+KT S
Sbjct: 38 VKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDYRIDEKNFVVVMVTKAKT--S 95
Query: 83 AGASSAQPAHTTPPTTAPSSNSTPPQEA---SVPPP------APT-PSIPASNVTSNVTA 132
G S P +P SS S PP A S PPP +P+ S+P ++ S +
Sbjct: 96 PGTSV--PPEASPTAAPESSTSFPPAPASGMSHPPPTAREDKSPSEESVPTTSPESVSGS 153
Query: 133 ANANSDTYGQ--AASNLVAGNDLEQTIQQIMDMGGGTWDKETVTRALQAAYNNPERAVDY 190
++ + + AAS LV G++ E + +IM MG +++E V AL+A+YNNP RAV+Y
Sbjct: 154 VPSSGSSGREEDAASTLVTGSEYETMLTEIMSMG---YERERVVAALRASYNNPHRAVEY 210
Query: 191 LYSGIPETAEVAVPVAHFPASQAAETGAAGAAPVSGVPNSSPLNMFPQETLSGAPAGGLG 250
L +GIP + E E G+ + VS P A GG
Sbjct: 211 LLTGIPGSPE-------------PEHGSVQESQVSEQP---------------ATEGGEN 242
Query: 251 SLDFLRNNQQVWSL 264
L+FLR+ Q ++
Sbjct: 243 PLEFLRDQPQFQNM 256
>gi|281345182|gb|EFB20766.1| hypothetical protein PANDA_004561 [Ailuropoda melanoleuca]
Length = 386
Score = 105 bits (261), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 71/213 (33%), Positives = 106/213 (49%), Gaps = 44/213 (20%)
Query: 23 VMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVMLSKSKTLGS 82
V A+K+ IE +GKD +P Q LI+ GK+L D+T L + K+ E F+VVM++K K + +
Sbjct: 1 VKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALKEYKIDEKNFVVVMVTKPKAVTT 60
Query: 83 AGASSAQ---------------------------------PAHTTP-PTTA-----PSSN 103
++ Q PA TP PTTA P+S
Sbjct: 61 PAPATTQQSNPATTTTVSSSTAPAVAQAPAPAPTLAPTPSPASVTPAPTTASSEPAPASA 120
Query: 104 STPPQEASVPPPAPTPSIPASNVTSNVTAANANSDTYGQAASNLVAGNDLEQTIQQIMDM 163
+ P E PA TP + T + + ++ S+ + A S LV G E + +IM M
Sbjct: 121 TQP--EKPAEKPAETPVATSPTATDSTSGDSSRSNLFEDATSALVTGQSYENMVTEIMSM 178
Query: 164 GGGTWDKETVTRALQAAYNNPERAVDYLYSGIP 196
G +++E V AL+A++NNP+RAV+YL GIP
Sbjct: 179 G---YEREQVIAALRASFNNPDRAVEYLLMGIP 208
>gi|354499742|ref|XP_003511965.1| PREDICTED: UV excision repair protein RAD23 homolog B-like
[Cricetulus griseus]
Length = 497
Score = 105 bits (261), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 77/234 (32%), Positives = 114/234 (48%), Gaps = 46/234 (19%)
Query: 23 VMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVMLSKSKTLGS 82
V A+K+ IE +GKD +P Q LI+ GK+L D+T L + K+ E F+VVM++K K + +
Sbjct: 102 VKALKEKIESEKGKDAFPVAGQKLIYAGKILSDDTALKEYKIDEKNFVVVMVTKPKAVTT 161
Query: 83 ---------------------------------AGASSAQPAHTTPPTT------APSSN 103
A A ++ PA TTP +T AP+S
Sbjct: 162 PVPATTQQSNTPATTAVSSSTATVVAQAPTPTPASAPTSTPASTTPASTTVSSEPAPASA 221
Query: 104 STPPQEASVPPPAPTPSIPASNVTSNVTAANANSDTYGQAASNLVAGNDLEQTIQQIMDM 163
+ P + A P +P + PA + ++ S+ + A S LV G E + +IM M
Sbjct: 222 AQPEKPAEKPAQSPVVTSPAP--ADSTPGDSSRSNLFEDATSALVTGQSYENMVTEIMSM 279
Query: 164 GGGTWDKETVTRALQAAYNNPERAVDYLYSGIPETAEVAVPVAHFPASQAAETG 217
G +++E V AL+A++NNP+RAV+YL GIP E V P QA TG
Sbjct: 280 G---YEREQVIAALRASFNNPDRAVEYLLMGIPGDRESQAVVD--PPPQAVSTG 328
>gi|414885366|tpg|DAA61380.1| TPA: hypothetical protein ZEAMMB73_350633 [Zea mays]
Length = 221
Score = 104 bits (260), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 55/103 (53%), Positives = 69/103 (66%), Gaps = 4/103 (3%)
Query: 163 MGGGTWDKETVTRALQAAYNNPERAVDYLYSGIPETAEVAVPVAHFPASQAAETGAAGAA 222
MGGGTWD++TV RAL+AAYNNPERAV+YLYSGIPE EV P P+SQ + A
Sbjct: 1 MGGGTWDRDTVLRALRAAYNNPERAVEYLYSGIPEQMEVPAPP---PSSQPVDPVQA-VQ 56
Query: 223 PVSGVPNSSPLNMFPQETLSGAPAGGLGSLDFLRNNQQVWSLL 265
P PN++PL++FPQ + + G+LD LRNN Q +LL
Sbjct: 57 PAQAGPNANPLDLFPQSLPNDSANANTGNLDVLRNNSQFQNLL 99
>gi|357504261|ref|XP_003622419.1| hypothetical protein MTR_7g037380 [Medicago truncatula]
gi|355497434|gb|AES78637.1| hypothetical protein MTR_7g037380 [Medicago truncatula]
Length = 176
Score = 104 bits (260), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 48/61 (78%), Positives = 55/61 (90%), Gaps = 2/61 (3%)
Query: 23 VMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVMLSK--SKTL 80
+M VK NIED+Q KDNYPC QQLLIHNGKVLKDETTLADN+VSEDGFLVVMLSK ++++
Sbjct: 77 IMDVKTNIEDIQEKDNYPCRQQLLIHNGKVLKDETTLADNEVSEDGFLVVMLSKVNNRSM 136
Query: 81 G 81
G
Sbjct: 137 G 137
>gi|195469335|ref|XP_002099593.1| GE14546 [Drosophila yakuba]
gi|194185694|gb|EDW99305.1| GE14546 [Drosophila yakuba]
Length = 411
Score = 104 bits (260), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 78/247 (31%), Positives = 120/247 (48%), Gaps = 17/247 (6%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M +T+K L+ F I P TV+ +KK I D +G + Y +Q LI+ G +L D+ T+
Sbjct: 1 MIITIKNLQQQTFTIEFAPEKTVLELKKKIFDERGPE-YVAEKQKLIYAGVILTDDRTVG 59
Query: 61 DNKVSEDGFLVVMLSKSKT------LGSAGA----SSAQPAHTTPPTTAPSSNSTPPQEA 110
V E F+VVML++ + LG + S+ + P + SNS P
Sbjct: 60 SYNVDEKKFIVVMLTRDSSSSNPNQLGVKESDKLTSTDNLKDSMPREESNHSNSPPVTRN 119
Query: 111 SVPPPAPTPSIPASNVTSNVTAANANSDTYGQAASNLVAGNDLEQTIQQIMDMGGGTWDK 170
S + + P S T N+ A + +A SNL+ G++ QT+ +++MG + +
Sbjct: 120 SEESILLSETTPIS--TDNLIGELAQASLQSRAESNLLMGDEYNQTVLSMVEMG---YPR 174
Query: 171 ETVTRALQAAYNNPERAVDYLYSGIP-ETAEVAVPVAHFPASQAAETGAAGAAPVSGVPN 229
E V RA+ A+YNNPERAV+YL +GIP E + V +TG+A + N
Sbjct: 175 EQVERAMAASYNNPERAVEYLINGIPAEEGTIDNDVNESTNPNGPQTGSASSVERPSESN 234
Query: 230 SSPLNMF 236
S P
Sbjct: 235 SDPFEFL 241
>gi|392569695|gb|EIW62868.1| UV excision repair protein Rad23 [Trametes versicolor FP-101664
SS1]
Length = 388
Score = 104 bits (259), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 77/198 (38%), Positives = 121/198 (61%), Gaps = 13/198 (6%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
MK+TVKTL+ F+I + +DTV +K+ I++ QG + Q LI++GKVL D ++
Sbjct: 1 MKITVKTLQQKVFQIEAEGTDTVADLKQKIQETQG---HGVDSQKLIYSGKVLPDSKSIE 57
Query: 61 DNKVSEDGFLVVMLSKSK-TLGSAGASSAQPAHTTPPTTAPSSNSTPPQEASVPPP-APT 118
++ E FLV+M+SK K T +AGASS+ PA +T P A + + E+S+P P AP+
Sbjct: 58 SCEIKEKDFLVLMVSKPKPTAATAGASSSTPAASTAPPAAAAPAA----ESSIPAPVAPS 113
Query: 119 PSIPASNVTSNVTAANANSDTYGQAASNLVAGNDLEQTIQQIMDMGGGTWDKETVTRALQ 178
+ P +T A A + + G L+ T+Q +++MG +++E V RAL+
Sbjct: 114 TAAPQPPNAPILTPAQA-APVAPSLGDGFLTGEALQGTVQNMIEMG---FEREQVMRALR 169
Query: 179 AAYNNPERAVDYLYSGIP 196
A++NNPERAV+YL++GIP
Sbjct: 170 ASFNNPERAVEYLFNGIP 187
>gi|331230142|ref|XP_003327736.1| UV excision repair protein Rad23 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|309306726|gb|EFP83317.1| UV excision repair protein Rad23 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 409
Score = 104 bits (259), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 74/209 (35%), Positives = 112/209 (53%), Gaps = 8/209 (3%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
MKLT KTL+ F + V+PS TV +K I++ QG + QQ LI +GKVL D+ T+
Sbjct: 1 MKLTFKTLQKQQFVLDVEPSTTVEKLKSLIKESQG---FEPEQQKLIFSGKVLADDKTIE 57
Query: 61 DNKVSEDGFLVVMLSKSKTLGSAGASSAQPAHTTPPTTAPSSNSTPPQEASVPPPAPTPS 120
V E F VVML K KT + A ++ P+ + ++ TP + +
Sbjct: 58 QIGVKEKDFFVVMLIKPKTAPTVPAPASVPSGAGAAASTSATAPTPAAAQPATATPSSTT 117
Query: 121 IPASNVTSNVTAANANSDTYGQAASNLVAGNDLEQTIQQIMDMGGGTWDKETVTRALQAA 180
PAS N +AA S G + G++L++TI +I++ G + +E VT+A++AA
Sbjct: 118 APASTDADNASAATPAS---GTQDPGFLVGSNLQKTIDEIVN--GMGFPREQVTKAMRAA 172
Query: 181 YNNPERAVDYLYSGIPETAEVAVPVAHFP 209
+NNP+RAV+YL +GIP + P P
Sbjct: 173 FNNPDRAVEYLMTGIPAGLDAPAPPVTLP 201
>gi|321479297|gb|EFX90253.1| hypothetical protein DAPPUDRAFT_299929 [Daphnia pulex]
Length = 381
Score = 103 bits (258), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 71/201 (35%), Positives = 111/201 (55%), Gaps = 19/201 (9%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M +T KTL+ + F+I + PS TV +K+ IE +G D YP Q LI+ GK+L D + L+
Sbjct: 1 MLVTFKTLQNTTFQIEIDPSSTVKTLKEKIEKEKGVD-YPAVGQKLIYAGKILDDVSVLS 59
Query: 61 DNKVSEDGFLVVMLSKSKTLGSAGASSAQPAHTTPPTTAPSSNSTPPQEASVPPPAPTPS 120
++ + E F+V+M++K K A + A+ T AP ++ P S
Sbjct: 60 EHGIDEKKFIVIMVTKPKASEPATTTPAETTTQPAATPAPVVVPAAAPAPTLATPQGDAS 119
Query: 121 IPASNVTSNVTAANANSDTYGQAASNLVAGNDLEQTIQQIMDMGGGTWDKETVTRALQAA 180
V++ + AA S L+ G+D Q +Q IMDMG + ++ V RAL+A+
Sbjct: 120 -----VSTGLLAAE----------SALIVGDDYNQMVQNIMDMG---YPRDQVERALRAS 161
Query: 181 YNNPERAVDYLYSGIPETAEV 201
+NNP+RAV+YL +GIP+ A+V
Sbjct: 162 FNNPDRAVEYLLTGIPDRADV 182
>gi|384493836|gb|EIE84327.1| UV excision repair protein Rad23 [Rhizopus delemar RA 99-880]
Length = 386
Score = 103 bits (258), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 67/210 (31%), Positives = 114/210 (54%), Gaps = 25/210 (11%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
+++TVKTL+ F++ V SDT+++VK+ I++ QG + QQ LI +GK+L D+ +
Sbjct: 4 LQITVKTLQQKQFKLDVDSSDTILSVKEKIQESQG---HAVAQQKLIFSGKILVDDKKVE 60
Query: 61 DNKVSEDGFLVVMLSKSKTLGSA-------------GASSAQPAHTTPPTTAPSSNSTPP 107
D ++E FLVVM++K+K ++ A+ +PA T + +
Sbjct: 61 DYNITEKDFLVVMVAKAKATPASSSAAASSASTPKESATQEKPAETA--PKPAETAAAAT 118
Query: 108 QEASVPPPAPTPSIPASNVTSNVTAANANSDTYGQAASNLVAGNDLEQTIQQIMDMGGGT 167
+++ PA P PAS + + S LV G+ LE ++ +M MG
Sbjct: 119 TPSNIASPASEP--PASTPAAPTETTTTATPA--DTFSQLVTGSQLESVVENMMSMG--- 171
Query: 168 WDKETVTRALQAAYNNPERAVDYLYSGIPE 197
+++ RAL+A++NNP+RAV+YL++GIPE
Sbjct: 172 FERAQCERALRASFNNPDRAVEYLFNGIPE 201
>gi|331250500|ref|XP_003337858.1| UV excision repair protein Rad23 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|309316848|gb|EFP93439.1| UV excision repair protein Rad23 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 409
Score = 103 bits (258), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 72/196 (36%), Positives = 109/196 (55%), Gaps = 8/196 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
MKLT KTL+ F + V+PS TV +K I++ QG + QQ LI +GKVL D+ T+
Sbjct: 1 MKLTFKTLQKQQFVLDVEPSTTVEKLKSLIKESQG---FEPEQQKLIFSGKVLADDKTIE 57
Query: 61 DNKVSEDGFLVVMLSKSKTLGSAGASSAQPAHTTPPTTAPSSNSTPPQEASVPPPAPTPS 120
V E F VVML K KT + A ++ P+ + ++ TP + +
Sbjct: 58 QIGVKEKDFFVVMLIKPKTAPTVPAPASVPSGAGAAASTSATAPTPAAAQPATATPSSTT 117
Query: 121 IPASNVTSNVTAANANSDTYGQAASNLVAGNDLEQTIQQIMDMGGGTWDKETVTRALQAA 180
PAS N +AA S G + G++L++TI +I++ G + +E VT+A++AA
Sbjct: 118 APASTDADNASAATPAS---GTQDPGFLVGSNLQKTIDEIVN--GMGFPREQVTKAMRAA 172
Query: 181 YNNPERAVDYLYSGIP 196
+NNP+RAV+YL +GIP
Sbjct: 173 FNNPDRAVEYLMTGIP 188
>gi|297685061|ref|XP_002820118.1| PREDICTED: UV excision repair protein RAD23 homolog B-like isoform
1 [Pongo abelii]
Length = 388
Score = 103 bits (258), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 76/236 (32%), Positives = 112/236 (47%), Gaps = 49/236 (20%)
Query: 23 VMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVMLSKSKTLGS 82
V A+K+ IE +GKD +P Q LI+ GK+L D+T L + K+ E F+VVM++K K + +
Sbjct: 2 VKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALKEYKIDEKNFVVVMVTKPKAVST 61
Query: 83 AGASSAQ-----------------------PAHTTPPTTAPSS--------------NST 105
++ Q P PT+ P+S S
Sbjct: 62 PAPATTQQSAPASTTAVTSSTTTTVAQAPTPVPALAPTSTPASITPASATASSEPASASA 121
Query: 106 PPQEASVPPPAPTPSIPASNVTSNVTAANANSDTYGQAASNLVAGNDLEQTIQQIMDMGG 165
QE PA TP + T + + ++ S+ + A S LV G E + +IM MG
Sbjct: 122 AKQEKPAEKPAETPVATSPTATDSTSGDSSRSNLFEDATSALVTGQSYENMVTEIMSMG- 180
Query: 166 GTWDKETVTRALQAAYNNPERAVDYLYSGIP---ETAEVAVPVAHFPASQAAETGA 218
+++E V AL+A++NNP+RAV+YL GIP E+ V P QAA TGA
Sbjct: 181 --YEREQVIAALRASFNNPDRAVEYLLMGIPGDRESQAVVDP------PQAASTGA 228
>gi|241713573|ref|XP_002412111.1| nucleotide excision repair factor NEF2, RAD23 component, putative
[Ixodes scapularis]
gi|215505188|gb|EEC14682.1| nucleotide excision repair factor NEF2, RAD23 component, putative
[Ixodes scapularis]
Length = 392
Score = 103 bits (257), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 84/254 (33%), Positives = 128/254 (50%), Gaps = 29/254 (11%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M +T+KTL+ F++ + PSDTV K+ IE +GK+ YP Q LI+ GK+L D++ ++
Sbjct: 1 MIVTLKTLQQQSFKVEIDPSDTVKVFKEKIEVEKGKE-YPAQYQKLIYAGKILNDDSKMS 59
Query: 61 DNKVSEDGFLVVMLSKSKT-LGSAGASSAQPAHTTP---PTT--------APSSNSTPPQ 108
+ + E F+V+M++K K S+G +A P P P T + + P+
Sbjct: 60 EYDIEEKKFVVIMVTKPKCGTPSSGEGAASPVVAAPVDVPGTPAPAGAASGNAGATKGPE 119
Query: 109 EASVPPPAPTPSIPAS-----------NVTSNVTAANANSDTYGQAASNLVAGNDLEQTI 157
A +PT + P S + TA +S A S LV G D ++ +
Sbjct: 120 AAGETTRSPTTAQPPSVPAQQTTPAPAAAAAAPTATTESSGGIALAESALVMGEDYQRMV 179
Query: 158 QQIMDMGGGTWDKETVTRALQAAYNNPERAVDYLYSGIPETAEVAVPVAHFPASQAAETG 217
QIM+MG +DK V RAL+A++NNP+RAV+YL +G E A P + A G
Sbjct: 180 SQIMEMG---YDKPQVERALRASFNNPDRAVEYLLTGGNEGGNTEGGGA--PPAAAQSPG 234
Query: 218 AAGAAPVSGVPNSS 231
AAP +P S+
Sbjct: 235 REAAAPPGALPLST 248
>gi|195354361|ref|XP_002043666.1| GM26792 [Drosophila sechellia]
gi|194128854|gb|EDW50897.1| GM26792 [Drosophila sechellia]
Length = 414
Score = 103 bits (257), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 69/208 (33%), Positives = 110/208 (52%), Gaps = 21/208 (10%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M +T+K L+ F I P TV+ +KK I D +G + Y +Q LI+ G +L D+ T+
Sbjct: 1 MIITIKNLQQQTFTIEFAPEKTVLELKKKIFDERGSE-YVAEKQKLIYAGVILTDDRTVG 59
Query: 61 DNKVSEDGFLVVMLSKSKTLGSAGASSAQPA----------HTTPPTTAPSSNSTPPQ-- 108
V E F+VVML++ + + S + + H+ P A SNS +
Sbjct: 60 SYNVDEKKFIVVMLTRDSSYSNRNQLSVKESDKLTSTDDSRHSMPCEEANHSNSPSCRNT 119
Query: 109 EASVPPPAPTPSIPASNVTSNVTAANANSDTYGQAASNLVAGNDLEQTIQQIMDMGGGTW 168
+ SV P +P+ + + A+ S +A SNL+ G++ QT+ +++MG +
Sbjct: 120 DDSVLSRETRP-LPSDELIGELAQASLQS----RAESNLLMGDEYNQTVLSMVEMG---Y 171
Query: 169 DKETVTRALQAAYNNPERAVDYLYSGIP 196
+E V RA+ A+YNNPERAV+YL +GIP
Sbjct: 172 PREQVERAMAASYNNPERAVEYLINGIP 199
>gi|444725253|gb|ELW65827.1| UV excision repair protein RAD23 like protein B [Tupaia chinensis]
Length = 367
Score = 103 bits (256), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 68/200 (34%), Positives = 107/200 (53%), Gaps = 10/200 (5%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++T+KT + F+I + P +TV A+K+ IE +GKD +P Q LI+ G++LKD+T L
Sbjct: 1 MQVTLKTPQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVEDQKLIYAGEILKDDTALK 60
Query: 61 DNKVSE-DGFLVVMLSKSKTLGSAGASSAQPAHTTPPTTAPSSNSTPPQEASVPPPAPTP 119
+ + E D L + S G ++ PA TP + SS P QE PP
Sbjct: 61 EYNIEEKDSVLSKPATDFLVSSSPGTPASTPAAVTPASRRTSSEPAPEQEQ---PPEELA 117
Query: 120 SIPASN--VTSNVTAANAN-SDTYGQAASNLVAGNDLEQTIQQIMDMGGGTWDKETVTRA 176
P + ++ TA +A+ S+ A L G + + +IM MG +++ V A
Sbjct: 118 DAPVATGPTSTGWTAGDASASNMLAGATGALTPGQSYQDMVSEIMSMG---YEQAQVIAA 174
Query: 177 LQAAYNNPERAVDYLYSGIP 196
L+A++N+P RAV+YL +GIP
Sbjct: 175 LRASFNDPHRAVEYLLTGIP 194
>gi|354479499|ref|XP_003501947.1| PREDICTED: UV excision repair protein RAD23 homolog A-like
[Cricetulus griseus]
Length = 375
Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 70/191 (36%), Positives = 107/191 (56%), Gaps = 21/191 (10%)
Query: 23 VMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVMLSKSKTLGS 82
V +K+ IE +G+D +P Q LI+ GK+L D+ + + + E F+VVM++K+K
Sbjct: 37 VKVLKEKIEAEKGRDAFPVAGQKLIYAGKILNDDVPIKEYHIDEKNFVVVMVTKAK---- 92
Query: 83 AGASSAQPAHTTPPTTAPSSNS----TPPQEASVPPPA----PTPSIPASNVTS-----N 129
AG S+ P + PT AP S++ P S PPPA +PS ++ TS
Sbjct: 93 AGQSTPAPPEVS-PTAAPESSTPFPPAPTSGMSHPPPASREDKSPSEESATATSPESISG 151
Query: 130 VTAANANSDTYGQAASNLVAGNDLEQTIQQIMDMGGGTWDKETVTRALQAAYNNPERAVD 189
++ +S AAS LV G++ E + +IM MG +++E V AL+A+YNNP RAV+
Sbjct: 152 SVPSSGSSGREEDAASTLVTGSEYETMLTEIMSMG---YERERVVAALRASYNNPHRAVE 208
Query: 190 YLYSGIPETAE 200
YL +GIP + E
Sbjct: 209 YLLTGIPGSPE 219
>gi|281353038|gb|EFB28622.1| hypothetical protein PANDA_009870 [Ailuropoda melanoleuca]
Length = 339
Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 71/190 (37%), Positives = 109/190 (57%), Gaps = 19/190 (10%)
Query: 23 VMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVMLSKSKTLGS 82
V +K+ IE +G+D +P Q LI+ GK+L D+ + D ++ E F+VVM++K+KT S
Sbjct: 1 VKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDYRIDEKNFVVVMVTKAKT--S 58
Query: 83 AGASSAQPAHTTPPTTAPSSNSTPPQEA---SVPPP------APT-PSIPASNVTSNVTA 132
G S P +P SS S PP A S PPP +P+ S+P ++ S +
Sbjct: 59 PGTSV--PPEASPTAAPESSTSFPPAPASGMSHPPPTAREDKSPSEESVPTTSPESVSGS 116
Query: 133 ANANSDTYGQ--AASNLVAGNDLEQTIQQIMDMGGGTWDKETVTRALQAAYNNPERAVDY 190
++ + + AAS LV G++ E + +IM MG +++E V AL+A+YNNP RAV+Y
Sbjct: 117 VPSSGSSGREEDAASTLVTGSEYETMLTEIMSMG---YERERVVAALRASYNNPHRAVEY 173
Query: 191 LYSGIPETAE 200
L +GIP + E
Sbjct: 174 LLTGIPGSPE 183
>gi|355768543|gb|EHH62732.1| UV excision repair protein RAD23-like protein A, partial [Macaca
fascicularis]
Length = 339
Score = 102 bits (255), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 81/254 (31%), Positives = 124/254 (48%), Gaps = 46/254 (18%)
Query: 23 VMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVMLSKSKTLGS 82
V +K+ IE +G+D +P Q LI+ GK+L D+ + D ++ E F+VVM++K+K
Sbjct: 1 VKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDYRIDEKNFVVVMVTKTK---- 56
Query: 83 AGASSAQPAHTTPPTTAPSSNSTPPQEA---SVPPPA----PTPSIPASNVTS-----NV 130
AG ++ P +P SS S PP S P PA +PS ++ TS
Sbjct: 57 AGQGTSAPPEASPTAAPESSTSFPPAPTSGMSHPQPAAREDKSPSEESAPTTSPESVSGS 116
Query: 131 TAANANSDTYGQAASNLVAGNDLEQTIQQIMDMGGGTWDKETVTRALQAAYNNPERAVDY 190
++ +S AAS LV G++ E + +IM MG +++E V AL+A+YNNP RAV+Y
Sbjct: 117 VPSSGSSGREEDAASTLVTGSEYETMLTEIMSMG---YERERVVAALRASYNNPHRAVEY 173
Query: 191 LYSGIPETAEVAVPVAHFPASQAAETGAAGAAPVSGVPNSSPLNMFPQETLSGAPAGGLG 250
L +GIP + E E G+ + VS P + A G
Sbjct: 174 LLTGIPGSPE-------------PEHGSVQESQVSEQPATE--------------AAGEN 206
Query: 251 SLDFLRNNQQVWSL 264
L+FLR+ Q ++
Sbjct: 207 PLEFLRDQPQFQNM 220
>gi|261197590|ref|XP_002625197.1| UV excision repair protein Rad23 [Ajellomyces dermatitidis
SLH14081]
gi|239595160|gb|EEQ77741.1| UV excision repair protein Rad23 [Ajellomyces dermatitidis
SLH14081]
gi|327354300|gb|EGE83157.1| nucleotide excision repair protein RAD23 [Ajellomyces dermatitidis
ATCC 18188]
Length = 386
Score = 102 bits (255), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 92/285 (32%), Positives = 133/285 (46%), Gaps = 40/285 (14%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
MKLT + LK F I +PS+TV VK+ I +G D QQ LI++GK+L+D T+
Sbjct: 1 MKLTFRDLKQQKFVIEAEPSETVGQVKEKISQEKGWD---VAQQKLIYSGKILQDANTIE 57
Query: 61 DNKVSEDGFLVVMLSKSKTLGSAGASSAQPAHTTPPTTAPSSNSTPPQEASVPPPAPTPS 120
+ E GF+V M+SK K S A+++ A +TP AP + STP + P P P+
Sbjct: 58 SYNIEEKGFIVCMVSKPKPAPSTSAAASSQAPSTP---APVAASTP----TAPAPRSNPT 110
Query: 121 IPASNVTSNVTAANANSDTYGQAASN----LVAGNDLEQTIQQIMDMGGGTWDKETVTRA 176
+ T + A A G A N L+ G EQ I Q+ MG + + + RA
Sbjct: 111 TSDAPATPSPAAPAAAPAVGGAATFNDPSALLMGPQGEQVIAQMESMG---FPRSDIDRA 167
Query: 177 LQAAYNNPERAVDYLYSGIPETAEVAVPVAHFPASQAAETGAAGAAPVSGVPNSSPLNMF 236
++AA+ NP+RA++YL +GIPET++ A A + +N+F
Sbjct: 168 MRAAFFNPDRAIEYLLNGIPETSQAEQREAAPAPPATTAPTGGAAPAAAATEGDEHVNLF 227
Query: 237 PQETLSGAP-----------------------AGGLGSLDFLRNN 258
+G P G LG+LDFLRNN
Sbjct: 228 EAAAQAGTPQAGATGRGARAAGQGLAAAAEGQGGSLGNLDFLRNN 272
>gi|225562098|gb|EEH10378.1| nucleotide excision repair protein RAD23 [Ajellomyces capsulatus
G186AR]
Length = 386
Score = 102 bits (255), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 93/293 (31%), Positives = 133/293 (45%), Gaps = 56/293 (19%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
MKLT + LK F I +PS+TV VK+ I +G D QQ LI++GK+L+D T+
Sbjct: 1 MKLTFRDLKQQKFVIEAEPSETVGQVKEKISQEKGWD---VAQQKLIYSGKILQDANTIE 57
Query: 61 DNKVSEDGFLVVMLSKSKTLGSAGASSAQPAHTTPPTTAPSSNSTPPQEASVPPPAPTPS 120
+ E GF+V M+SK K PA P T+A S+ P A P
Sbjct: 58 SYNIEEKGFIVCMVSKPK-----------PA---PSTSAGVSSQAPSTPAPAAASTPAAP 103
Query: 121 IPASN-VTSNVT-----------AANANSDTYGQAASNLVAGNDLEQTIQQIMDMGGGTW 168
SN +TS++T S T+ S L+ G EQ + Q+ MG +
Sbjct: 104 AHRSNPLTSDITATPSPAAPVAAPVAGGSTTFND-PSALLMGPQGEQVVAQMESMG---F 159
Query: 169 DKETVTRALQAAYNNPERAVDYLYSGIPETAEVAVPVAHFPASQAAETGAAGAAP--VSG 226
+ + RA++AAY NP+RA++YL +GIPET + A + AAP +
Sbjct: 160 PRSDIDRAMRAAYFNPDRAIEYLLNGIPETTQAEHREAAPAPPATTTPSGSTAAPPTTAA 219
Query: 227 VPNSSPLNMFPQETLSGAP---------------------AGGLGSLDFLRNN 258
V + +N+F +GAP G LG+LDFLR+N
Sbjct: 220 VGDDEHINLFEAAAQAGAPQLGGAGRGARAAGQGLAPPAEGGNLGNLDFLRSN 272
>gi|440902080|gb|ELR52923.1| UV excision repair protein RAD23-like protein A [Bos grunniens
mutus]
Length = 391
Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 75/213 (35%), Positives = 114/213 (53%), Gaps = 25/213 (11%)
Query: 3 LTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADN 62
+T+KTL+ F+IR++P +TV +K+ IE +G+D +P Q LI+ GK+L D+ + D
Sbjct: 5 ITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDY 64
Query: 63 KVSEDGFLVVMLSKSKTLGSAGASSAQPAHTTPPTTAPSSNS---TPPQEASVPP----- 114
++ E F+VVM++K L A A T+P T+ PS S TP S P
Sbjct: 65 RIDEKNFVVVMVTKVGVLMPAPFFWVSQAKTSPGTSVPSEASPTATPESSTSFPSAPASG 124
Query: 115 ---PAPT------PSIPASNVTS-----NVTAANANSDTYGQAASNLVAGNDLEQTIQQI 160
P PT PS ++ TS ++ + AAS LV G++ E + +I
Sbjct: 125 MSHPPPTAREDKSPSEESAPTTSPESVSGSVPSSGSGGREEDAASTLVTGSEYETMLTEI 184
Query: 161 MDMGGGTWDKETVTRALQAAYNNPERAVDYLYS 193
M MG +++E V AL+A+YNNP RAV+YL +
Sbjct: 185 MSMG---YERERVVAALRASYNNPHRAVEYLLT 214
>gi|332025640|gb|EGI65802.1| UV excision repair protein RAD23-like protein B [Acromyrmex
echinatior]
Length = 360
Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 71/196 (36%), Positives = 103/196 (52%), Gaps = 12/196 (6%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M +T+K L+ F I + TV +K+ IE +G +P Q LI+ GK+L DE LA
Sbjct: 1 MIITLKNLQQQTFTIEIDSLQTVKDLKEKIETQKG---FPAEHQKLIYAGKILADEQPLA 57
Query: 61 DNKVSEDGFLVVMLSKSKTLGSAGASSAQPAHTTPPTTAPSSNSTPPQEASVPPPAPTPS 120
+ + E F+VVM++K KT + S Q + SS +T P S P +
Sbjct: 58 EYNIDEKKFIVVMVTKPKTGATPKTSEEQRTEGDKKEESTSSATTQP---SSNPNVQDTT 114
Query: 121 IPASNVTSNVTAANANSDTYGQAASNLVAGNDLEQTIQQIMDMGGGTWDKETVTRALQAA 180
ASNV AA + A S L+ G D + IMDMG +++E V +AL+A+
Sbjct: 115 RAASNVQEQPVAAAPAAGQ---AESALLMGEDYNTMVNNIMDMG---YEREQVVQALRAS 168
Query: 181 YNNPERAVDYLYSGIP 196
+NNP+RAV+YL +GIP
Sbjct: 169 FNNPDRAVEYLITGIP 184
>gi|378730563|gb|EHY57022.1| UV excision repair protein Rad23 [Exophiala dermatitidis
NIH/UT8656]
Length = 405
Score = 102 bits (253), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 78/222 (35%), Positives = 114/222 (51%), Gaps = 20/222 (9%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
MKL+ + LK F I +P+DT+ VK+ + +G D QQ LI++GKVL D T+
Sbjct: 1 MKLSFRDLKQQKFTIEAEPTDTIAQVKEKVAAEKGWD---ASQQKLIYSGKVLADANTVE 57
Query: 61 DNKVSEDGFLVVMLSKSKTLGSAGASSAQPAHTTPPTTAPSSNSTPPQEASVPPPAPTPS 120
K+ E GF+V M+SK K A++++P + P SS P PA
Sbjct: 58 SYKIEEKGFIVCMISKPK------AAASKPKEPSTPAATSSSTPAAPAAPPASAPAAPSE 111
Query: 121 IPASNVTSNVTAANANSDTYGQAASN----LVAGNDLEQTIQQIMDMGGGTWDKETVTRA 176
P++ + A ++DT G N + GN E TI+++ MG G + + RA
Sbjct: 112 QPSTPTPAQSATAAPSTDTTGAGGFNDPSAFLMGNRNESTIREMESMGFG---RPEIERA 168
Query: 177 LQAAYNNPERAVDYLYSGIPETAEVAVPVAHFPASQAAETGA 218
L+AAY NP+RA++YL SGIPE + A+ AA TGA
Sbjct: 169 LRAAYFNPDRAIEYLLSGIPEN----IQAQQRQATPAAGTGA 206
>gi|304367641|gb|ADM26628.1| nucleotide excision repair factor Rad23 [Polypedilum vanderplanki]
Length = 383
Score = 102 bits (253), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 72/211 (34%), Positives = 110/211 (52%), Gaps = 17/211 (8%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M +T+K L+ ++ S TV +K+ IE GK+ YP QQ LI+ G +L D+ T+
Sbjct: 1 MWITIKNLQQQTIKLEFDESQTVQKLKEKIESELGKE-YPASQQKLIYAGCILDDDKTIE 59
Query: 61 DNKVSEDGFLVVMLSKSKTLGSAGASSAQPAHT--TPPTTAPSSNSTPPQEASVPPPAPT 118
KV E F+VVM+ K+ +A + T TT TP +++ + +
Sbjct: 60 SYKVDEKKFIVVMVKKATVAAAAAPEKEEAGKTITNESTTEKKKEDTPASKSTTTASSTS 119
Query: 119 PSIP----------ASNVTSNVTAANANSDTYGQAASNLVAGNDLEQTIQQIMDMGGGTW 168
A+ T++ AA A+ QA +NLV G + +Q IM+MG +
Sbjct: 120 SPSKSSSEQSQQPAAAQETASGGAA-ASQSQIAQAEANLVMGENYNTMVQNIMEMG---Y 175
Query: 169 DKETVTRALQAAYNNPERAVDYLYSGIPETA 199
D+++V RAL A++NNPERAV+YL +GIPE A
Sbjct: 176 DRDSVVRALNASFNNPERAVEYLITGIPEMA 206
>gi|195172518|ref|XP_002027044.1| GL18167 [Drosophila persimilis]
gi|194112822|gb|EDW34865.1| GL18167 [Drosophila persimilis]
Length = 430
Score = 101 bits (252), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 68/216 (31%), Positives = 110/216 (50%), Gaps = 24/216 (11%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M +TVK L+ F I P TV+ +KK I D +G + Y +Q LI+ G +L D+ T+A
Sbjct: 1 MIITVKNLQQQTFTIEFDPEKTVLELKKKIFDERGVE-YVAEKQKLIYAGVILMDDRTIA 59
Query: 61 DNKVSEDGFLVVMLSKS---------------KTLGSAGASSAQPAHTTPPTTAPSSNST 105
K+ E F+VVML++ K A + T + +S ST
Sbjct: 60 SYKIDEKKFIVVMLTRDTAASTAASSTSDTQPKRTNEAEGKLFEKEKNIEKTISSTSGST 119
Query: 106 PPQEASVPPPAPTPSIPASNV-----TSNVTAANANSDTYGQAASNLVAGNDLEQTIQQI 160
P A P+ + S + + +S++ AN+ +A SNL+ G + +T+ +
Sbjct: 120 PISGAVESAPSVSVSSTGTAIQRPYSSSDLVGELANASLQTRAESNLLMGEEYNKTVLSM 179
Query: 161 MDMGGGTWDKETVTRALQAAYNNPERAVDYLYSGIP 196
++MG + ++ V RA+ A++NNPERAV+YL +GIP
Sbjct: 180 VEMG---YPRDQVERAMGASFNNPERAVEYLINGIP 212
>gi|194771119|ref|XP_001967622.1| GF19257 [Drosophila ananassae]
gi|190614417|gb|EDV29941.1| GF19257 [Drosophila ananassae]
Length = 405
Score = 101 bits (252), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 68/207 (32%), Positives = 112/207 (54%), Gaps = 19/207 (9%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M +T+K L+ F I + TV +KK I DV+G + Y +Q LI+ G +L D+ T++
Sbjct: 1 MIITIKNLQQQTFTIEFEAEKTVFELKKKIFDVRGSE-YIVEKQKLIYAGVILVDDHTIS 59
Query: 61 DNKVSEDGFLVVMLSK--------SKTLGSAGASSAQPAHTTPPTTAPSSNSTPPQEASV 112
V E F+VVML++ S+ + A + +T P + +SNS ++
Sbjct: 60 SYNVDEKKFIVVMLTRDTASSTCQSRIKEADNAQNRLCLNTQPLPSEITSNSDTFCGSTN 119
Query: 113 PPPAPTPSIPASNVT---SNVTAANANSDTYGQAASNLVAGNDLEQTIQQIMDMGGGTWD 169
P I A+N T +++ N +A SNL+ G++ QT+Q +++MG +
Sbjct: 120 QPII----ISATNETKQRNDLVGELENVSLQSRAESNLLMGDEYTQTVQSLIEMG---YP 172
Query: 170 KETVTRALQAAYNNPERAVDYLYSGIP 196
+E V RA+ A++NNPERAV+YL +G+P
Sbjct: 173 REQVERAMSASFNNPERAVEYLINGLP 199
>gi|126002609|ref|XP_001352382.1| GA14903 [Drosophila pseudoobscura pseudoobscura]
gi|54640152|gb|EAL29275.1| GA14903 [Drosophila pseudoobscura pseudoobscura]
Length = 430
Score = 101 bits (252), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 69/220 (31%), Positives = 111/220 (50%), Gaps = 24/220 (10%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M +TVK L+ F I P TV+ +KK I D +G + Y +Q LI+ G +L D+ T+A
Sbjct: 1 MIITVKNLQQQTFTIEFDPEKTVLELKKKIFDERGVE-YVAEKQKLIYAGVILMDDRTIA 59
Query: 61 DNKVSEDGFLVVMLSKS---------------KTLGSAGASSAQPAHTTPPTTAPSSNST 105
K+ E F+VVML++ K A + T + +S ST
Sbjct: 60 SYKIDEKKFIVVMLTRDTAASTAASSTSDTQPKRTNEAEGKLFEKEKNIEKTISSTSGST 119
Query: 106 PPQEASVPPPAPTPSIPASNV-----TSNVTAANANSDTYGQAASNLVAGNDLEQTIQQI 160
P A P+ + S + + +S++ AN+ +A SNL+ G + +T+ +
Sbjct: 120 PISGAVESAPSVSVSSTGTAIQRPYSSSDLVGELANASLQTRAESNLLMGEEYNKTVLSM 179
Query: 161 MDMGGGTWDKETVTRALQAAYNNPERAVDYLYSGIPETAE 200
++MG + ++ V RA+ A++NNPERAV+YL +GIP E
Sbjct: 180 VEMG---YPRDQVERAMGASFNNPERAVEYLINGIPTEDE 216
>gi|222622818|gb|EEE56950.1| hypothetical protein OsJ_06656 [Oryza sativa Japonica Group]
Length = 242
Score = 101 bits (252), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 45/70 (64%), Positives = 57/70 (81%)
Query: 136 NSDTYGQAASNLVAGNDLEQTIQQIMDMGGGTWDKETVTRALQAAYNNPERAVDYLYSGI 195
+D YG AASNLVAG++LE T+Q I++MGGG WD++TV RAL AAYNNPERAV+YLY+G+
Sbjct: 157 EADIYGLAASNLVAGSNLEGTVQSILEMGGGAWDRDTVMRALGAAYNNPERAVEYLYTGL 216
Query: 196 PETAEVAVPV 205
P AE + V
Sbjct: 217 PGQAEASAVV 226
>gi|47496878|dbj|BAD19842.1| RAD23 protein-like [Oryza sativa Japonica Group]
Length = 110
Score = 101 bits (252), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 45/69 (65%), Positives = 57/69 (82%)
Query: 137 SDTYGQAASNLVAGNDLEQTIQQIMDMGGGTWDKETVTRALQAAYNNPERAVDYLYSGIP 196
+D YG AASNLVAG++LE T+Q I++MGGG WD++TV RAL AAYNNPERAV+YLY+G+P
Sbjct: 26 ADIYGLAASNLVAGSNLEGTVQSILEMGGGAWDRDTVMRALGAAYNNPERAVEYLYTGLP 85
Query: 197 ETAEVAVPV 205
AE + V
Sbjct: 86 GQAEASAVV 94
>gi|296190503|ref|XP_002743221.1| PREDICTED: UV excision repair protein RAD23 homolog B isoform 1
[Callithrix jacchus]
Length = 388
Score = 101 bits (252), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 78/236 (33%), Positives = 115/236 (48%), Gaps = 49/236 (20%)
Query: 23 VMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVMLSKSKTLGS 82
V A+K+ IE +GKD +P Q LI+ GK+L D+T L + K+ E F+VVM++K K + +
Sbjct: 2 VKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALKEYKIDEKNFVVVMVTKPKAVST 61
Query: 83 -AGASSAQPA---------------------------HTTPPTTAPSSNSTPP------- 107
A A++ Q A +TP + P+S + P
Sbjct: 62 PAPATTQQSAPASTTAVTSSTVTTVAQAPTPAPALAPTSTPSSVTPASATASPEPAPASA 121
Query: 108 --QEASVPPPAPTPSIPASNVTSNVTAANANSDTYGQAASNLVAGNDLEQTIQQIMDMGG 165
QE PA TP + T + + ++ S+ + A S LV G E + +IM MG
Sbjct: 122 TKQEKPAEKPAETPVASSPTSTDSTSGDSSRSNLFEDATSALVTGQSYENMVTEIMSMG- 180
Query: 166 GTWDKETVTRALQAAYNNPERAVDYLYSGIP---ETAEVAVPVAHFPASQAAETGA 218
+++E V AL+A++NNP+RAV+YL GIP E V P QAA TGA
Sbjct: 181 --YEREQVIAALRASFNNPDRAVEYLLMGIPGDRENQAVVDP------PQAASTGA 228
>gi|297721185|ref|NP_001172955.1| Os02g0465112 [Oryza sativa Japonica Group]
gi|255670888|dbj|BAH91684.1| Os02g0465112, partial [Oryza sativa Japonica Group]
Length = 92
Score = 101 bits (251), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 45/69 (65%), Positives = 57/69 (82%)
Query: 137 SDTYGQAASNLVAGNDLEQTIQQIMDMGGGTWDKETVTRALQAAYNNPERAVDYLYSGIP 196
+D YG AASNLVAG++LE T+Q I++MGGG WD++TV RAL AAYNNPERAV+YLY+G+P
Sbjct: 8 ADIYGLAASNLVAGSNLEGTVQSILEMGGGAWDRDTVMRALGAAYNNPERAVEYLYTGLP 67
Query: 197 ETAEVAVPV 205
AE + V
Sbjct: 68 GQAEASAVV 76
>gi|389611285|dbj|BAM19254.1| UV excision repair protein rad23 [Papilio polytes]
Length = 326
Score = 100 bits (250), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 66/196 (33%), Positives = 104/196 (53%), Gaps = 18/196 (9%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M +T+KTL+ F+I + P +TV A+K IE +GKD Y Q LI+ GK+L D+ ++
Sbjct: 1 MLVTLKTLQQLSFQIEIDPEETVKALKLKIEVEKGKD-YAADYQRLIYAGKILLDDNKIS 59
Query: 61 DNKVSEDGFLVVMLSKSKTLGSAGASSAQPAHTTPPTTAPSSNSTPPQEASVPPPAPTPS 120
+ E F+V+M++K K + +S++ P + +S A P PT +
Sbjct: 60 TYNIDEKKFIVIMVTKPKPSETQASSTSTPEAGECAASTVVGDSKDKSTAEETPQPPTAA 119
Query: 121 IPASNVTSNVTAANANSDTYGQAASNLVAGNDLEQTIQQIMDMGGGTWDKETVTRALQAA 180
P T AA + A D E T+Q IMDMG ++++ V +AL+A+
Sbjct: 120 EPER--------------TAEPAAPVISAELDFESTVQSIMDMG---YNRQQVEQALRAS 162
Query: 181 YNNPERAVDYLYSGIP 196
++N ERAV+YL +GIP
Sbjct: 163 FSNRERAVEYLITGIP 178
>gi|345565734|gb|EGX48682.1| hypothetical protein AOL_s00079g321 [Arthrobotrys oligospora ATCC
24927]
Length = 408
Score = 100 bits (250), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 105/311 (33%), Positives = 143/311 (45%), Gaps = 64/311 (20%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
+KLT K LK F I +DT+ VK I+ +G + LI++GK+L+D T+
Sbjct: 5 VKLTFKDLKNERFTIEAGTADTISTVKARIQTEKG---WEPSTVKLIYSGKILQDAQTVG 61
Query: 61 DNKVSEDGFLVVMLSKSKTLGSAGASSAQPAHTTP-----PTTAPS-------SNSTPPQ 108
+ E GF+V M+SK+KT A +SS+ A +TP P PS S+ST P
Sbjct: 62 SYNIDEKGFIVCMVSKAKTAPKASSSSSAAAPSTPVKSSTPVQTPSAPIANAASSSTVP- 120
Query: 109 EASVPP-PAPTPSIPASNVTSNVTAANANSDTYGQAASNLVAGNDLEQTIQQIMDMGGGT 167
A+VP P P P + A TS T A N S+L G+ E I Q+ +MG
Sbjct: 121 -AAVPETPTPAPQVAA---TSQPTTAAFND------PSSLAMGSARESAILQMTEMG--- 167
Query: 168 WDKETVTRALQAAYNNPERAVDYLYSGIPETAEVAVPVAHF----PASQAAETGAAGAAP 223
+ + V A++AA+NNP+RAV+YL +GIPE + P A P AA AA
Sbjct: 168 FPRPDVEAAMRAAFNNPDRAVEYLMTGIPEHLQREAPPAQSSRAPPTQPTTGATAAPAAT 227
Query: 224 VSGVPN---------SSPLNMFP-----QETLSGAPAGGLG----------------SLD 253
P P+N+F + G PAGG G +LD
Sbjct: 228 TESQPAAAAAAAADVDEPVNLFEAAAAQRSGSRGTPAGGRGGAAVNPLAALAGGGGANLD 287
Query: 254 FLRNNQQVWSL 264
FLRNN Q L
Sbjct: 288 FLRNNPQFQQL 298
>gi|4928709|gb|AAD33695.1|AF136606_1 DHR23 [Drosophila melanogaster]
Length = 414
Score = 100 bits (250), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 67/205 (32%), Positives = 112/205 (54%), Gaps = 15/205 (7%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M +T+K L+ F I P TV+ +KK I + +G + Y +Q LI+ G +L D+ T+
Sbjct: 1 MIITIKNLQQQTFTIEFAPEKTVLELKKKIFEERGPE-YVAEKQKLIYAGVILTDDRTVG 59
Query: 61 DNKVSEDGFLVVMLSKSKTLGSAGASSAQPAHTTPPTTAPSSNSTPPQEASVPPPAPTPS 120
V E F+VVML++ + + S + ++ +T S S P +EA+ +P+ +
Sbjct: 60 SYNVDEKKFIVVMLTRDSSSSNRNQLSVKESNKLT-STDDSKQSMPCEEAN-HTNSPSST 117
Query: 121 IPASNVTSNVTAANANSDTYGQ---------AASNLVAGNDLEQTIQQIMDMGGGTWDKE 171
+V S T ++ + G+ A SNL+ G++ QT+ +++MG + +E
Sbjct: 118 NTEDSVLSRETRPLSSDELIGELAQASLQSRAESNLLMGDEYNQTVLSMVEMG---YPRE 174
Query: 172 TVTRALQAAYNNPERAVDYLYSGIP 196
V RA+ A+YNNPERAV+YL +GIP
Sbjct: 175 QVERAMAASYNNPERAVEYLINGIP 199
>gi|24638591|ref|NP_651918.2| Rad23, isoform A [Drosophila melanogaster]
gi|442614351|ref|NP_001259052.1| Rad23, isoform C [Drosophila melanogaster]
gi|4928456|gb|AAD33594.1|AF132147_1 DNA repair protein Rad23 [Drosophila melanogaster]
gi|7304320|gb|AAF59352.1| Rad23, isoform A [Drosophila melanogaster]
gi|220942642|gb|ACL83864.1| Rad23-PA [synthetic construct]
gi|440218136|gb|AGB96542.1| Rad23, isoform C [Drosophila melanogaster]
Length = 414
Score = 100 bits (249), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 67/205 (32%), Positives = 112/205 (54%), Gaps = 15/205 (7%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M +T+K L+ F I P TV+ +KK I + +G + Y +Q LI+ G +L D+ T+
Sbjct: 1 MIITIKNLQQQTFTIEFAPEKTVLELKKKIFEERGPE-YVAEKQKLIYAGVILTDDRTVG 59
Query: 61 DNKVSEDGFLVVMLSKSKTLGSAGASSAQPAHTTPPTTAPSSNSTPPQEASVPPPAPTPS 120
V E F+VVML++ + + S + ++ +T S S P +EA+ +P+ +
Sbjct: 60 SYNVDEKKFIVVMLTRDSSSSNRNQLSVKESNKLT-STDDSKQSMPCEEAN-HTNSPSST 117
Query: 121 IPASNVTSNVTAANANSDTYGQ---------AASNLVAGNDLEQTIQQIMDMGGGTWDKE 171
+V S T ++ + G+ A SNL+ G++ QT+ +++MG + +E
Sbjct: 118 NTEDSVLSRETRPLSSDELIGELAQASLQSRAESNLLMGDEYNQTVLSMVEMG---YPRE 174
Query: 172 TVTRALQAAYNNPERAVDYLYSGIP 196
V RA+ A+YNNPERAV+YL +GIP
Sbjct: 175 QVERAMAASYNNPERAVEYLINGIP 199
>gi|213402873|ref|XP_002172209.1| UV excision repair protein RAD23 [Schizosaccharomyces japonicus
yFS275]
gi|212000256|gb|EEB05916.1| UV excision repair protein RAD23 [Schizosaccharomyces japonicus
yFS275]
Length = 373
Score = 100 bits (249), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 90/279 (32%), Positives = 135/279 (48%), Gaps = 31/279 (11%)
Query: 1 MKLTVKTLKGSHFEI-RVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTL 59
M+LT K L+ F + V P TV+ VK+ I++ QG Y +Q LI++G++L D+ T+
Sbjct: 1 MQLTFKNLQQQKFVVPDVDPKTTVLEVKQKIKEQQG---YEVERQKLIYSGRILADDKTV 57
Query: 60 ADNKVSEDGFLVVMLSKSKTLGSAGASSAQPAHTTPPTTAPSSNSTPPQEASVPPPAPTP 119
+ + E F+V M+S+ A AS + T ++ STP S P P P
Sbjct: 58 EEYDIKEKDFIVCMVSR------APASKVKTEQKTEEKKQSTTESTPLNTTSTSPKTPAP 111
Query: 120 -SIPASNVTSNVTAANANSDTYGQAASNLVAGNDLEQTIQQIMDMGGGTWDKETVTRALQ 178
S+P + V AA + G S+LV G I +++MG +++ V A++
Sbjct: 112 ESVPEQTQPAAVAAAPTAAPIVGD--SSLVLGAQRNAVIDNMVEMG---YERSQVELAMR 166
Query: 179 AAYNNPERAVDYLYSGIPETAE------VAVPVAHFPASQAAETGAAGAAPVSGVPNSSP 232
AA+NNP+RAV+YL +GIPE+ A A A+ A + AAP + ++P
Sbjct: 167 AAFNNPDRAVEYLLNGIPESVRQAQEQEQAAAAAAATAATNATAASGNAAPANSTQPAAP 226
Query: 233 LNMFPQ-------ETLSGAPAGGLGSLDFLRNNQQVWSL 264
N+F Q E SG A G L FLR Q L
Sbjct: 227 GNLFEQAAAHAQGEEESG--ASGEDPLGFLRELPQFQQL 263
>gi|345482490|ref|XP_003424606.1| PREDICTED: UV excision repair protein RAD23 homolog B-like isoform
2 [Nasonia vitripennis]
Length = 377
Score = 100 bits (249), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 73/214 (34%), Positives = 105/214 (49%), Gaps = 25/214 (11%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M +T+K L F + + + TV +K IE +G +P Q LI+ GK+L DE L
Sbjct: 1 MIITIKNLWQQTFTVEIDATKTVKDLKDKIEAQKG---FPSQHQKLIYAGKILTDEQPLT 57
Query: 61 DNKVSEDGFLVVMLSKSKTLGSAG----------ASSAQPAHTTPPTTAPSSNSTPPQ-- 108
+ + E F+VVM+SK K S S Q A T+ P AP S P Q
Sbjct: 58 EYNIDEKKFVVVMVSKPKNEASTSDETQSGTDNTKSKEQTAPTSTPAPAPVQTSVPAQVT 117
Query: 109 -EASVPPPAPTPSIPASNVTSNVTAANANSDTYGQAASN-----LVAGNDLEQTIQQIMD 162
ASV P+ P +P + T A A SN L+ G + + IMD
Sbjct: 118 EAASVQAPSSVP-VPTTAPTRTPETATQQPTPTSVATSNPPESALLMGEEYNAMVNNIMD 176
Query: 163 MGGGTWDKETVTRALQAAYNNPERAVDYLYSGIP 196
MG ++++ V +AL+A++NNP+RAV+YL +GIP
Sbjct: 177 MG---YERDQVEQALRASFNNPDRAVEYLLTGIP 207
>gi|345482494|ref|XP_003424607.1| PREDICTED: UV excision repair protein RAD23 homolog B-like isoform
3 [Nasonia vitripennis]
Length = 367
Score = 100 bits (248), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 73/214 (34%), Positives = 105/214 (49%), Gaps = 25/214 (11%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M +T+K L F + + + TV +K IE +G +P Q LI+ GK+L DE L
Sbjct: 1 MIITIKNLWQQTFTVEIDATKTVKDLKDKIEAQKG---FPSQHQKLIYAGKILTDEQPLT 57
Query: 61 DNKVSEDGFLVVMLSKSKTLGSAG----------ASSAQPAHTTPPTTAPSSNSTPPQ-- 108
+ + E F+VVM+SK K S S Q A T+ P AP S P Q
Sbjct: 58 EYNIDEKKFVVVMVSKPKNEASTSDETQSGTDNTKSKEQTAPTSTPAPAPVQTSVPAQVT 117
Query: 109 -EASVPPPAPTPSIPASNVTSNVTAANANSDTYGQAASN-----LVAGNDLEQTIQQIMD 162
ASV P+ P +P + T A A SN L+ G + + IMD
Sbjct: 118 EAASVQAPSSVP-VPTTAPTRTPETATQQPTPTSVATSNPPESALLMGEEYNAMVNNIMD 176
Query: 163 MGGGTWDKETVTRALQAAYNNPERAVDYLYSGIP 196
MG ++++ V +AL+A++NNP+RAV+YL +GIP
Sbjct: 177 MG---YERDQVEQALRASFNNPDRAVEYLLTGIP 207
>gi|345482492|ref|XP_001608155.2| PREDICTED: UV excision repair protein RAD23 homolog B-like isoform
1 [Nasonia vitripennis]
Length = 358
Score = 100 bits (248), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 73/214 (34%), Positives = 105/214 (49%), Gaps = 25/214 (11%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M +T+K L F + + + TV +K IE +G +P Q LI+ GK+L DE L
Sbjct: 1 MIITIKNLWQQTFTVEIDATKTVKDLKDKIEAQKG---FPSQHQKLIYAGKILTDEQPLT 57
Query: 61 DNKVSEDGFLVVMLSKSKTLGSAG----------ASSAQPAHTTPPTTAPSSNSTPPQ-- 108
+ + E F+VVM+SK K S S Q A T+ P AP S P Q
Sbjct: 58 EYNIDEKKFVVVMVSKPKNEASTSDETQSGTDNTKSKEQTAPTSTPAPAPVQTSVPAQVT 117
Query: 109 -EASVPPPAPTPSIPASNVTSNVTAANANSDTYGQAASN-----LVAGNDLEQTIQQIMD 162
ASV P+ P +P + T A A SN L+ G + + IMD
Sbjct: 118 EAASVQAPSSVP-VPTTAPTRTPETATQQPTPTSVATSNPPESALLMGEEYNAMVNNIMD 176
Query: 163 MGGGTWDKETVTRALQAAYNNPERAVDYLYSGIP 196
MG ++++ V +AL+A++NNP+RAV+YL +GIP
Sbjct: 177 MG---YERDQVEQALRASFNNPDRAVEYLLTGIP 207
>gi|195450799|ref|XP_002072638.1| GK13711 [Drosophila willistoni]
gi|194168723|gb|EDW83624.1| GK13711 [Drosophila willistoni]
Length = 420
Score = 100 bits (248), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 73/214 (34%), Positives = 109/214 (50%), Gaps = 27/214 (12%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M +TVK L+ F I P TV+ +KK I + +G + P Q+L I+ G +L D+ ++
Sbjct: 1 MIITVKNLQQQTFTIDFDPEKTVLELKKKIFEERGAEYLPEKQKL-IYAGVILVDDRKIS 59
Query: 61 DNKVSEDGFLVVMLSKSKTLGS------------AGASSAQPAHTTPPTTAPSSNSTPPQ 108
KV E F+VVML++ S A S + + P TAPS P
Sbjct: 60 SYKVDEKKFIVVMLTRDAAPSSASSTTASTSEKVAEKPSEKKTNPEPTPTAPS-----PA 114
Query: 109 EASVPPPAPTPSIPASNVTSN------VTAANANSDTYGQAASNLVAGNDLEQTIQQIMD 162
S P PA S AS TS+ + A S +A S+L+ G + +T+ +++
Sbjct: 115 AVSAPVPASVASSGASGTTSDSPNTETTVSPTAPSTDQTRAESSLLMGEEYNRTVSSMVE 174
Query: 163 MGGGTWDKETVTRALQAAYNNPERAVDYLYSGIP 196
MG + +E V RA+ A++NNPERAV+YL +GIP
Sbjct: 175 MG---YPREQVERAMAASFNNPERAVEYLINGIP 205
>gi|432885045|ref|XP_004074630.1| PREDICTED: UV excision repair protein RAD23 homolog B-like [Oryzias
latipes]
Length = 395
Score = 100 bits (248), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 80/278 (28%), Positives = 133/278 (47%), Gaps = 30/278 (10%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M +T+KTL+ F+I + +TV +K+ IE +GK+++ Q LI+ GK+L D+T L
Sbjct: 1 MLITLKTLQQQTFKIDIDEEETVKTLKERIEQEKGKESFSVAGQKLIYAGKILSDDTALK 60
Query: 61 DNKVSEDGFLVVMLSKSKTLGSAGASSAQPAHTTPPTTAPSSNSTPPQEASVPPPAPTPS 120
+ K+ E F+VVM++K KT + S+ + + P + S+ + P
Sbjct: 61 EYKIDEKNFVVVMVTKPKT-AAPSPKSSSASSSAPSSAPSSAAAAAAPTPPSVADKPAEV 119
Query: 121 IPASNVTSN-------------VTAANANSDTYGQAASNLVAGNDLEQTIQQIMDMGGGT 167
PA + ++ +++D +A S LV G+ + + ++M MG
Sbjct: 120 APADKLEEKESSTAEPPPPPPPARSSESSTDLLSEAVSTLVTGSSYDTMVNEMMLMG--- 176
Query: 168 WDKETVTRALQAAYNNPERAVDYLYSGIPETAEVAVPVAHFPASQAAETGAAGAAPVSGV 227
+++E V AL+A+YNNP+RAV+YL SGIP Q + TG VS
Sbjct: 177 YEREQVVAALRASYNNPDRAVEYLLSGIP------------GQDQGSRTGPDSTPAVSES 224
Query: 228 PNSSPLNMFPQETLSGAPAGGLGS-LDFLRNNQQVWSL 264
P + + +P+ G G+ L FLRN Q +
Sbjct: 225 PAAPAGGTAAPTSTESSPSAGGGNPLGFLRNQPQFHVM 262
>gi|395513058|ref|XP_003760747.1| PREDICTED: UV excision repair protein RAD23 homolog A [Sarcophilus
harrisii]
Length = 404
Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 79/258 (30%), Positives = 123/258 (47%), Gaps = 51/258 (19%)
Query: 23 VMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVMLSKSKTLGS 82
V +K+ IE +G+D +P Q LI+ GK+L D+ + D K+ E F+VVM++K+K
Sbjct: 63 VKVLKEKIEAEKGRDAFPVSGQKLIYAGKILSDDVPIRDYKIDEKNFVVVMVTKAK---- 118
Query: 83 AGASSAQPAHTTPPTTAPSSNSTPPQEAS-------VPPPAPTPSIPASNVTSNVTAANA 135
AG +++ P+ + P A + + P + +PPPAP+ + + T A
Sbjct: 119 AGLATSAPSEPSAPAAANTLEPSTPTPPAPAIVAMPLPPPAPSEEQKPAEEPAAGTPPEA 178
Query: 136 NSDTY---------GQAASNLVAGNDLEQTIQQIMDMGGGTWDKETVTRALQAAYNNPER 186
S + AAS LV G++ E + +IM MG +++E V AL+A+YNNP R
Sbjct: 179 GSGSLPSSGSSGQEDDAASTLVTGSEYETMLTEIMSMG---YERERVVAALRASYNNPHR 235
Query: 187 AVDYLYSGIPETAEVAVPVAHFPASQAAETGAAGAAPVSGVPNSSPLNMFPQETLSGAPA 246
AV+YL +GIP + E P S P+ Q AP
Sbjct: 236 AVEYLLTGIPGSPE---------------------------PESGPVQE-SQAPEQPAPE 267
Query: 247 GGLGSLDFLRNNQQVWSL 264
GG L+FLR+ Q ++
Sbjct: 268 GGENPLEFLRDQPQFQNM 285
>gi|393911377|gb|EFO15597.2| UV excision repair protein Rad23 [Loa loa]
Length = 337
Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 68/201 (33%), Positives = 104/201 (51%), Gaps = 28/201 (13%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M +T KT+ FEI + P T+ VK I + +G+ YP Q LI+NGKVL D T+
Sbjct: 1 MLITFKTIAQVSFEIELDPHLTIGEVKAKIAEEKGEVEYPIECQKLIYNGKVLDDAQTVE 60
Query: 61 DNKVSEDGFLVVMLSKSKTLGSAGASSAQPAHTTPPTTAPSSNSTPPQEASVPPPAPTPS 120
+ + F+V+M+++ K +G A PA +TP P +P A +
Sbjct: 61 EVMIDPSKFVVIMIARKKPVG------ATPAESTP----------QPSNLQIPAAAQVTT 104
Query: 121 IPASNVTSNVTAANANSDTYGQAASNLVAGNDLEQTIQQIMDMGGGTWDKETVTRALQAA 180
+ ++VT N AA NSD + E+T Q I+ MG + ++ V RAL+A+
Sbjct: 105 VTPASVTDNSPAAPQNSDGL---------TPEQEETAQAIVAMG---YSRDKVIRALRAS 152
Query: 181 YNNPERAVDYLYSGIPETAEV 201
+ N +RAV+YL SGIPE ++
Sbjct: 153 FFNGDRAVEYLCSGIPEEEDL 173
>gi|440908044|gb|ELR58113.1| UV excision repair protein RAD23-like protein B, partial [Bos
grunniens mutus]
Length = 386
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 87/279 (31%), Positives = 130/279 (46%), Gaps = 51/279 (18%)
Query: 23 VMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVMLSKSKTLGS 82
V A+K+ IE +GKD +P Q LI+ GK+L D+T L + K+ E F+VVM++K K + +
Sbjct: 1 VRALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALKEYKIDEKNFVVVMVTKPKAVTT 60
Query: 83 AGASSAQPAHTTPPTT------------------------------APSSNSTPP----- 107
++ Q +++ TT AP++ S+ P
Sbjct: 61 PAPATTQQSNSAATTTVSSSTAPAVTQAPAPAPASAPTPTPVSVTPAPTTASSEPAPASA 120
Query: 108 --QEASVPPPAPTPSIPASNVTSNVTAANANSDTYGQAASNLVAGNDLEQTIQQIMDMGG 165
QE P TP T + + ++ S+ + A S LV G E + +IM MG
Sbjct: 121 AKQEKPAEGPVETPVATTPASTDSTSGDSSRSNLFEDATSALVTGQSYENMVTEIMSMG- 179
Query: 166 GTWDKETVTRALQAAYNNPERAVDYLYSGIPETAEVAVPVAHFPASQAAETGAAGAAPVS 225
+++E V AL+A++NNP+RAV+YL GIP E V P AA TG AP S
Sbjct: 180 --YEREQVIAALRASFNNPDRAVEYLLMGIPGDRESQAVVDPPP---AASTG----APQS 230
Query: 226 GVPNSSPLNMFPQETLSGAPAGGLGSLDFLRNNQQVWSL 264
V ++ T S +GG L+FLRN Q +
Sbjct: 231 SVAAAAATTTATTTTTS---SGG-HPLEFLRNQPQFQQM 265
>gi|340374755|ref|XP_003385903.1| PREDICTED: UV excision repair protein RAD23 homolog B-like
[Amphimedon queenslandica]
Length = 409
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 71/201 (35%), Positives = 108/201 (53%), Gaps = 15/201 (7%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M +TVKTL+ F+I ++ S +V+ +KK IE QG + +P Q LI++GK+L D L+
Sbjct: 1 MIITVKTLQQKTFKIEIEESASVLDLKKAIEANQG-EAFPAAGQKLIYSGKILNDSQPLS 59
Query: 61 DNKVSEDGFLVVMLSKSKTLGSAGASSAQPAHTTPPTTAPSSNSTPPQEASVPPPAPTPS 120
D + E F+VVM+SK K + + + T+ +T +S +TP +S P T S
Sbjct: 60 DYSIQESNFVVVMVSKIKPAPAPTPKPQETSSTSSSSTPSTSGATPQPSSSATAPT-TTS 118
Query: 121 IPASNVTSNVTAANANS----------DTYGQAASNLVAGNDLEQTIQQIMDMGGGTWDK 170
P+ + T A + QA S LV G D E+T+ ++ MG + +
Sbjct: 119 APSGTTGTESTDGGAGGGQTSSTASSSSEFDQALSTLVTGTDYERTVNDMVGMG---FMR 175
Query: 171 ETVTRALQAAYNNPERAVDYL 191
V RALQA+YNNP RA++YL
Sbjct: 176 NDVVRALQASYNNPTRAMEYL 196
>gi|326469095|gb|EGD93104.1| UV excision repair protein [Trichophyton tonsurans CBS 112818]
Length = 381
Score = 98.6 bits (244), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 71/200 (35%), Positives = 109/200 (54%), Gaps = 14/200 (7%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
MKLT + LK F I +PSD ++ VK+ I +G +P QQ LI++GK+L+D+ T+
Sbjct: 1 MKLTFRDLKQQKFVIDAEPSDKILDVKEKIATEKG---WPASQQKLIYSGKILQDDNTVE 57
Query: 61 DNKVSEDGFLVVMLSKSKTLGSAGASSAQPAHTTPPTTAPSSNSTPPQEASVPPPAPTPS 120
+ E GF+V M+SK K SA A+S+ P+ + P A+ + TP+
Sbjct: 58 SYNIEEKGFIVCMVSKPKAAPSASAASSSQTPAAAPSAPAPVTPSAPSRANA-AASETPA 116
Query: 121 IPASNVTSNVTAANANSDTYGQAASNLVAGNDLEQTIQQIMDMGGGTWDKETVTRALQAA 180
P+ A A+S S L+ GN ++ I Q++ MG D + RA++AA
Sbjct: 117 TPS-------PAGGASSGATFNDPSALLMGNQGQEAITQMLAMGFSRGD---IDRAMRAA 166
Query: 181 YNNPERAVDYLYSGIPETAE 200
Y NP+RA++YL +GIPE +E
Sbjct: 167 YFNPDRAIEYLLNGIPEESE 186
>gi|156362373|ref|XP_001625753.1| predicted protein [Nematostella vectensis]
gi|156212600|gb|EDO33653.1| predicted protein [Nematostella vectensis]
Length = 364
Score = 98.6 bits (244), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 72/209 (34%), Positives = 113/209 (54%), Gaps = 18/209 (8%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M +T KTL+ F++ + +TV+ +K+ IE +GKD YP G LI+ GK+L D+ L
Sbjct: 1 MIITFKTLQQQTFKVEIGEDETVLKLKQKIEADKGKDAYPHGNIKLIYAGKILNDDNPLK 60
Query: 61 DNKVSEDGFLVVMLSKSKTLGSAGASSAQP-----AHTTPPTTAPSSNSTPPQEASVPPP 115
+ + E F+V+M++K K +A A + A T P+T SS + QE S P
Sbjct: 61 EYNIDEKSFVVIMVAKPKPAPAAVAPAPVTTTIPQAATASPSTQASSTA---QEDSKPEA 117
Query: 116 APTPSIPASNVTSNVTAANAN-------SDTYGQAASNLVAGNDLEQTIQQIMDMGGGTW 168
P + S T+ A+ +A S L G + E + +IM+MG +
Sbjct: 118 KPDEAKSTSTETAASATTTASTPAASTPRSYIEEAESALATGTEYEGLVTEIMNMG---F 174
Query: 169 DKETVTRALQAAYNNPERAVDYLYSGIPE 197
+++ V RALQA++NNP+RAV+YL +GIP+
Sbjct: 175 ERDQVVRALQASFNNPDRAVEYLTTGIPD 203
>gi|338720420|ref|XP_003364163.1| PREDICTED: UV excision repair protein RAD23 homolog B isoform 2
[Equus caballus]
Length = 387
Score = 98.6 bits (244), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 89/279 (31%), Positives = 128/279 (45%), Gaps = 51/279 (18%)
Query: 23 VMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVMLSKSKTLGS 82
V A+K+ IE +GKD +P Q LI+ GK+L D+T L + K+ E F+VVM++K K + +
Sbjct: 2 VKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALKEYKIDEKNFVVVMVTKPKAVTT 61
Query: 83 AGASSAQ---------------------------------PAHTTPPTTAPSSNSTP--- 106
++ Q PA TP +T SS P
Sbjct: 62 PAPATTQQSNSATTTTVSSSTAPAAAQAPTPAPALAPAPTPASITPASTTASSEPAPASA 121
Query: 107 -PQEASVPPPAPTPSIPASNVTSNVTAANANSDTYGQAASNLVAGNDLEQTIQQIMDMGG 165
QE PA P + T + + ++ S+ + A S LV G E + +IM MG
Sbjct: 122 TKQEKPAEKPAEAPVATSPTSTDSTSGDSSRSNLFEDATSALVTGQSYENMVTEIMSMG- 180
Query: 166 GTWDKETVTRALQAAYNNPERAVDYLYSGIPETAEVAVPVAHFPASQAAETGAAGAAPVS 225
+++E V AL+A++NNP+RAV+YL GIP E V P AA TG AP S
Sbjct: 181 --YEREQVIAALRASFNNPDRAVEYLLMGIPGDRESQAVVDPPP---AASTG----APQS 231
Query: 226 GVPNSSPLNMFPQETLSGAPAGGLGSLDFLRNNQQVWSL 264
V ++ T S +GG L+FLRN Q +
Sbjct: 232 SVAAAAATTTATTTTTS---SGG-HPLEFLRNQPQFQQM 266
>gi|240273069|gb|EER36592.1| pre-mRNA-splicing factor cwc24 [Ajellomyces capsulatus H143]
Length = 826
Score = 98.6 bits (244), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 91/291 (31%), Positives = 132/291 (45%), Gaps = 56/291 (19%)
Query: 3 LTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADN 62
L + LK F I +PS+TV VK+ I +G D QQ LI++GK+L+D T+
Sbjct: 443 LQIIDLKQQKFVIEAEPSETVGQVKEKISQEKGWD---VAQQKLIYSGKILQDANTIESY 499
Query: 63 KVSEDGFLVVMLSKSKTLGSAGASSAQPAHTTPPTTAPSSNSTPPQEASVPPPAPTPSIP 122
+ E GF+V M+SK K PA P T+A S+ P A P +
Sbjct: 500 NIEEKGFIVCMVSKPK-----------PA---PSTSAGVSSQAPSTPAPAAASTPAAAAH 545
Query: 123 ASN-VTSNVTA-----------ANANSDTYGQAASNLVAGNDLEQTIQQIMDMGGGTWDK 170
SN +TS++TA S T+ S L+ G EQ + Q+ MG + +
Sbjct: 546 RSNPLTSDITATPSPAAPVVAPVAGGSTTFND-PSALLMGPQGEQVVAQMESMG---FPR 601
Query: 171 ETVTRALQAAYNNPERAVDYLYSGIPETAEVAVPVAHFPASQAAETGAAGAAP--VSGVP 228
+ RA++AAY NP+RA++YL +GIPET + A + AAP + V
Sbjct: 602 SDIDRAMRAAYFNPDRAIEYLLNGIPETTQAEHREAAPAPPATTTPSGSTAAPPTTAAVG 661
Query: 229 NSSPLNMFPQETLSGAP---------------------AGGLGSLDFLRNN 258
+ +N+F +GAP G LG+LDFLR+N
Sbjct: 662 DDEHINLFEAAAQAGAPQLGGAGRGARAAGQGLAPPAEGGNLGNLDFLRSN 712
>gi|302668202|ref|XP_003025675.1| hypothetical protein TRV_00140 [Trichophyton verrucosum HKI 0517]
gi|291189798|gb|EFE45064.1| hypothetical protein TRV_00140 [Trichophyton verrucosum HKI 0517]
Length = 379
Score = 98.2 bits (243), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 72/200 (36%), Positives = 111/200 (55%), Gaps = 14/200 (7%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
MKLT + LK F I +PSD ++ VK+ I +G +P QQ LI++GK+L+D+ T+
Sbjct: 1 MKLTFRDLKQQKFVIDAEPSDKILDVKEKIASEKG---WPASQQKLIYSGKILQDDNTVE 57
Query: 61 DNKVSEDGFLVVMLSKSKTLGSAGASSAQPAHTTPPTTAPSSNSTPPQEASVPPPAPTPS 120
+ E GF+V M+SK K SA A+S+ P+ + + P A+ P + TP+
Sbjct: 58 SYNIEEKGFIVCMVSKPKAAPSASAASSSQTPAAAPSAPAPTTPSAPTRANA-PASETPA 116
Query: 121 IPASNVTSNVTAANANSDTYGQAASNLVAGNDLEQTIQQIMDMGGGTWDKETVTRALQAA 180
P+ A A+S S L+ GN ++ I Q++ MG D + RA++AA
Sbjct: 117 TPS-------PAGGASSGATFNDPSALLMGNQGQEAITQMLAMGFSRGD---IDRAMRAA 166
Query: 181 YNNPERAVDYLYSGIPETAE 200
Y NP+RA++YL +GIPE +E
Sbjct: 167 YFNPDRAIEYLLNGIPEESE 186
>gi|83415124|ref|NP_001032776.1| uncharacterized protein LOC562839 [Danio rerio]
gi|79154071|gb|AAI08001.1| Zgc:123349 [Danio rerio]
Length = 404
Score = 98.2 bits (243), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 80/246 (32%), Positives = 122/246 (49%), Gaps = 50/246 (20%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
+ +T+KTL+ F++++ TV A+K+ IE+ +GKD +P Q LI+ GK+L D+ L
Sbjct: 2 LTITLKTLQQQTFKVQIDEELTVKALKEKIEEEKGKDGFPAVGQKLIYAGKILNDDIPLK 61
Query: 61 DNKVSEDGFLVVMLSKSKTLGSAGASSAQPAHTTPPTTAPSSNSTPPQEASVPP--PAPT 118
+ K+ E F+VVM++K K+ S + P TP T P++ PP + VP P P
Sbjct: 62 EYKIDEKNFVVVMVTKPKSAASPQTPTPVPVSETP-THQPTTPVAPPNASIVPETTPDPA 120
Query: 119 PSIPASNVTS---NVTAANANSDTYGQ--------------------------------- 142
P PA++V VTA A S+ +
Sbjct: 121 PVEPAASVEPIDPPVTAPPAASEDTVETTEPVSATPAPAVEEEIQGQEEQAIAQSEASLT 180
Query: 143 --------AASNLVAGNDLEQTIQQIMDMGGGTWDKETVTRALQAAYNNPERAVDYLYSG 194
AAS LV G E + +IM MG +++E V AL+A++NNP+RAV+YL +G
Sbjct: 181 DELSLLEAAASILVTGQAYENLVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLTG 237
Query: 195 IPETAE 200
IP +E
Sbjct: 238 IPAESE 243
>gi|395516067|ref|XP_003762216.1| PREDICTED: UV excision repair protein RAD23 homolog B [Sarcophilus
harrisii]
Length = 482
Score = 98.2 bits (243), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 84/281 (29%), Positives = 126/281 (44%), Gaps = 51/281 (18%)
Query: 23 VMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVMLSKSKTLGS 82
V A+K+ IE +GKD +P Q LI+ GK+L D+T L + K+ E F+VVM++K K +
Sbjct: 94 VKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALKEYKIDEKNFVVVMVTKPKAAAT 153
Query: 83 AGASSAQPAHTTP-----------------PTTAPS----------------------SN 103
+ S A + P PT +P+
Sbjct: 154 STPSPATTQQSNPATTTTVSSSSAASVAQAPTPSPALAPTPTPTSVTPTPAAAACEPIPT 213
Query: 104 STPPQEASVPPPAPTPSIPASNVTSNVTAANANSDTYGQAASNLVAGNDLEQTIQQIMDM 163
STP +E P P + + + ++ S+ + A S LV G E + +IM M
Sbjct: 214 STPKEEKPAEKPVEAPVGISPTSSDSTLGDSSRSNLFEDATSALVTGQSYENMVTEIMSM 273
Query: 164 GGGTWDKETVTRALQAAYNNPERAVDYLYSGIPETAEVAVPVAHFPASQAAETGAAGAAP 223
G +++E V AL+A++NNP+RAV+YL GIP E V QAA TGAA ++
Sbjct: 274 G---YEREQVIAALRASFNNPDRAVEYLLMGIPGDRESQAVVD---PPQAASTGAAQSSA 327
Query: 224 VSGVPNSSPLNMFPQETLSGAPAGGLGSLDFLRNNQQVWSL 264
V+ ++ T G P L+FLRN Q +
Sbjct: 328 VAAAAATTTATTTTTTTSGGHP------LEFLRNQPQFQQM 362
>gi|302506096|ref|XP_003015005.1| hypothetical protein ARB_06765 [Arthroderma benhamiae CBS 112371]
gi|291178576|gb|EFE34365.1| hypothetical protein ARB_06765 [Arthroderma benhamiae CBS 112371]
Length = 380
Score = 97.8 bits (242), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 72/199 (36%), Positives = 110/199 (55%), Gaps = 14/199 (7%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
MKLT + LK F I +PSD ++ VK+ I +G +P QQ LI++GK+L+D+ T+
Sbjct: 1 MKLTFRDLKQQKFVIDAEPSDKILDVKEKIASEKG---WPASQQKLIYSGKILQDDNTVE 57
Query: 61 DNKVSEDGFLVVMLSKSKTLGSAGASSAQPAHTTPPTTAPSSNSTPPQEASVPPPAPTPS 120
+ E GF+V M+SK K SA A+S+ P+ + + P AS P + TP+
Sbjct: 58 SYNIEEKGFIVCMVSKPKAAPSASAASSSQTPAAAPSAPAPTTPSAPTRASA-PASETPA 116
Query: 121 IPASNVTSNVTAANANSDTYGQAASNLVAGNDLEQTIQQIMDMGGGTWDKETVTRALQAA 180
P+ A A+S S L+ GN ++ I Q++ MG D + RA++AA
Sbjct: 117 TPS-------PAGGASSGATFNDPSALLMGNQGQEAITQMLAMGFSRGD---IDRAMRAA 166
Query: 181 YNNPERAVDYLYSGIPETA 199
Y NP+RA++YL +GIPE +
Sbjct: 167 YFNPDRAIEYLLNGIPEES 185
>gi|354546648|emb|CCE43380.1| hypothetical protein CPAR2_210250 [Candida parapsilosis]
Length = 399
Score = 97.8 bits (242), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 77/228 (33%), Positives = 125/228 (54%), Gaps = 22/228 (9%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ K K I V+ +D+V + K+ + + KD P Q L+++GKVL+D+ TL
Sbjct: 1 MQIIFKDFKKQTIPIDVELNDSVSSAKEKL--AKEKDCTP-SQIKLVYSGKVLQDDKTLE 57
Query: 61 DNKVSEDGFLVVMLSKSKTLGSAGASSAQPAHTTPPTTAPSSNSTPPQEASVPPPAPTPS 120
+ K+ E ++ M+SK+K + A + +A + +ST V P TP+
Sbjct: 58 ECKLKEGASIIFMISKAKETPTP-APVSSTPAAEAAASASTGDST-----KVEPAGSTPT 111
Query: 121 IPA---SNVTSNVTAANANSDTYGQAASNLVAGNDLEQTIQQIMDMGGGTWDKETVTRAL 177
+PA S +N+ +A ++T + S G++ E TIQ IM+MG +++ V AL
Sbjct: 112 VPAAPTSGAATNIEGESAPTET---SESTFALGSERETTIQNIMEMG---YERPQVEAAL 165
Query: 178 QAAYNNPERAVDYLYSGIPETAEVAVPVAHFPASQAAETGAAGAAPVS 225
+AA+NNP RAV+YL SGIPE+ + P A P + AA +GAAP++
Sbjct: 166 RAAFNNPHRAVEYLISGIPES--LQRPSA--PVASAATGSGSGAAPLA 209
>gi|194332576|ref|NP_001123777.1| uncharacterized protein LOC100170527 [Xenopus (Silurana)
tropicalis]
gi|156914684|gb|AAI52591.1| Zgc:123349 [Danio rerio]
gi|189441745|gb|AAI67540.1| LOC100170527 protein [Xenopus (Silurana) tropicalis]
Length = 404
Score = 97.8 bits (242), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 79/246 (32%), Positives = 122/246 (49%), Gaps = 50/246 (20%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
+ +T+KTL+ F++++ TV A+K+ IE+ +GKD +P Q LI+ GK+L D+ L
Sbjct: 2 LTITLKTLQQQTFKVQIDEELTVKALKEKIEEEKGKDGFPAVGQKLIYAGKILNDDIPLK 61
Query: 61 DNKVSEDGFLVVMLSKSKTLGSAGASSAQPAHTTPPTTAPSSNSTPPQEASVPP--PAPT 118
+ K+ E F+VVM++K K+ S + P TP T P++ PP + VP P P
Sbjct: 62 EYKIDEKNFVVVMVTKPKSAASPQTPTPVPVSETP-THQPTTPVAPPNASIVPETTPDPA 120
Query: 119 PSIPASNVTS---NVTAANANSDTYGQ--------------------------------- 142
P PA++V +TA A S+ +
Sbjct: 121 PVEPAASVEPIDPPITAPPAASEDTVETTEPVSATPAPVVEEEIQGQEEQAIAQSEASLT 180
Query: 143 --------AASNLVAGNDLEQTIQQIMDMGGGTWDKETVTRALQAAYNNPERAVDYLYSG 194
AAS LV G E + +IM MG +++E V AL+A++NNP+RAV+YL +G
Sbjct: 181 DELSLLEAAASILVTGQAYENLVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLTG 237
Query: 195 IPETAE 200
IP +E
Sbjct: 238 IPAESE 243
>gi|428673091|gb|EKX74004.1| uv excision repair protein rad23, putative [Babesia equi]
Length = 317
Score = 97.4 bits (241), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 72/198 (36%), Positives = 101/198 (51%), Gaps = 34/198 (17%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
MKLTVKTLK E++VQ + TV AV + IE Q N P Q LIH+GK+LK E +
Sbjct: 1 MKLTVKTLKNVQVEVQVQETSTVEAVMEQIE--QLLPNMPAKTQKLIHSGKILKREMQIK 58
Query: 61 DNKVSEDGFLVVMLSKSKTLGSAGASSAQPAHTTPPTTAPSSNSTPPQEASVPPPAPTPS 120
D +DG V++++ SA A+ TP STP Q+ AP S
Sbjct: 59 DYPDIKDGDKVIVIASKVVESSAPQPVAKVEEKTP-------ESTPVQQE-----APEKS 106
Query: 121 IPASNVTSNVTAANANSDTYGQAASNLVAGNDLEQTIQQIMDMGGGTWDKETVTRALQAA 180
P Y +S L+ G +L+ + +I +MG +++ V RA+ AA
Sbjct: 107 EP----------------VYDNPSSKLLIGQELQDNVNRICEMG---FERAMVERAMAAA 147
Query: 181 YNNPERAVDYLYSG-IPE 197
+NNPERAV++L +G IPE
Sbjct: 148 FNNPERAVEFLSTGHIPE 165
>gi|198436382|ref|XP_002131525.1| PREDICTED: similar to RAD23a homolog [Ciona intestinalis]
Length = 335
Score = 97.4 bits (241), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 64/194 (32%), Positives = 103/194 (53%), Gaps = 10/194 (5%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M +T+KTLK + F+I + + V +K+ I +G DN+P Q LI+ GK+L D +L
Sbjct: 1 MLITIKTLKQNIFKIEIDEEEPVKVLKEKIAKEKGNDNFPVAGQKLIYAGKILDDSKSLK 60
Query: 61 DNKVSEDGFLVVMLSKSKTLGSAGASSAQPAHTTPPTTAPSSNSTPPQEASVPPPAPTPS 120
+ K+ + F+V M++K K++ + +P TT + P + +V + T S
Sbjct: 61 EYKIEDGKFIVAMVTKPKSVSPPAPTPPEPTEAAVTTTTSTQEEQPTNQPAV--ASTTSS 118
Query: 121 IPASNVTSNVTAANANSDTYGQAASNLVAGNDLEQTIQQIMDMGGGTWDKETVTRALQAA 180
PA S+ + N + QA S LV G + + IM MG +++E V AL A+
Sbjct: 119 SPAEEQASSASPLNVS-----QAESTLVTGEAYNELVTSIMAMG---FERERVVAALNAS 170
Query: 181 YNNPERAVDYLYSG 194
+ NP+RAV+YL SG
Sbjct: 171 FCNPDRAVEYLMSG 184
>gi|344302977|gb|EGW33251.1| hypothetical protein SPAPADRAFT_60596 [Spathaspora passalidarum
NRRL Y-27907]
Length = 377
Score = 97.4 bits (241), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 69/201 (34%), Positives = 104/201 (51%), Gaps = 21/201 (10%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ K K I V+ +DTV++ K+ + + + Q L+++GKVL D+ TL
Sbjct: 1 MQIIFKDFKKQTVPIEVELTDTVLSTKEKLGQAK---SCEASQIKLVYSGKVLVDDKTLE 57
Query: 61 DNKVSEDGFLVVMLSKSKTLGSAGASSAQPAHTTPPTTAPSSNSTPPQEASV---PPPAP 117
+ K+ E ++ M+SK+K S+ +S+ QP P P+S S P QE S
Sbjct: 58 EYKIKEGVSIIFMISKAK---SSQSSTPQPQAAATPEQKPASESQPKQETSQLGNAAATS 114
Query: 118 TPSIPASNVTSNVTAANANSDTYGQAASNLVAGNDLEQTIQQIMDMGGGTWDKETVTRAL 177
+ A VT A AS G++ E TIQ IM+MG +D+ V AL
Sbjct: 115 AAAAAAPASDEAVTEA---------PASTFAVGSEREATIQNIMEMG---YDRPQVENAL 162
Query: 178 QAAYNNPERAVDYLYSGIPET 198
+AA+NNP RAV+YL +GIPE+
Sbjct: 163 RAAFNNPHRAVEYLITGIPES 183
>gi|345327426|ref|XP_001507990.2| PREDICTED: UV excision repair protein RAD23 homolog B-like
[Ornithorhynchus anatinus]
Length = 292
Score = 97.4 bits (241), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 68/207 (32%), Positives = 104/207 (50%), Gaps = 41/207 (19%)
Query: 23 VMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVMLSKSK---- 78
V A+K+ IE +GKD +P Q LI+ GK+L D+T L + K+ E F+VVM++K K
Sbjct: 42 VKALKEKIETEKGKDAFPVAGQKLIYAGKILNDDTALKEYKIDEKNFVVVMVTKPKATAT 101
Query: 79 -----------------TLGSAGASSAQPAHTTPPTTAPSSNS---------TPPQE--A 110
T+ S+ AS+ PA T P AP + + P +E A
Sbjct: 102 PMPSPVVGQQSNPATTSTVSSSKASAVTPAPTPSPVLAPVTPTPAGEPAPTVAPKEEKPA 161
Query: 111 SVPPPAPTPSIPAS------NVTSNVTAANANSDTYGQAASNLVAGNDLEQTIQQIMDMG 164
P AP P+S + + + + + S+ + A S LV G E + +IM MG
Sbjct: 162 EKPVEAPVALSPSSSDSLTGDASGDASGDASRSNLFEDATSALVTGQSYENMVTEIMSMG 221
Query: 165 GGTWDKETVTRALQAAYNNPERAVDYL 191
+++E V AL+A++NNP+RAV+YL
Sbjct: 222 ---YEREQVIAALRASFNNPDRAVEYL 245
>gi|209879445|ref|XP_002141163.1| UV excision repair protein Rad23 [Cryptosporidium muris RN66]
gi|209556769|gb|EEA06814.1| UV excision repair protein Rad23, putative [Cryptosporidium muris
RN66]
Length = 347
Score = 97.4 bits (241), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 66/198 (33%), Positives = 107/198 (54%), Gaps = 30/198 (15%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
MK+ V+T++ + EI V+ + TV+ +K+ IE + +Q LI G++L D T+
Sbjct: 1 MKIKVRTVQNTEHEIEVEDNFTVLQIKQLIEAKNSQ--MTASRQKLIFAGRILGDSQTVQ 58
Query: 61 DNKVSEDGFLVVMLSKSKTLGSAGASSAQPAHTTPPTTAPSSNSTPPQEASVPPPAPTPS 120
D + E LVV++SK G+ S++ + T + S+ +TP
Sbjct: 59 DIGIKEGERLVVLVSK----GAIQQKSSEISQTKNIGNSTSAQTTP-------------- 100
Query: 121 IPASNVTSN--VTAANANSDTYGQAASNLVAGNDLEQTIQQIMDMGGGTWDKETVTRALQ 178
VT+N V N + +TY +AS L+ G +LE TI I++MG +++ V A++
Sbjct: 101 -----VTTNTGVIPNNCDQNTYESSASALITGTELETTINNIVNMG---FERNQVIAAMR 152
Query: 179 AAYNNPERAVDYLYSGIP 196
AA+NNP+RAV+YL SGIP
Sbjct: 153 AAFNNPDRAVEYLTSGIP 170
>gi|344228919|gb|EGV60805.1| hypothetical protein CANTEDRAFT_137273 [Candida tenuis ATCC 10573]
gi|344228920|gb|EGV60806.1| UV excision repair protein Rad23 [Candida tenuis ATCC 10573]
Length = 356
Score = 97.1 bits (240), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 68/198 (34%), Positives = 103/198 (52%), Gaps = 28/198 (14%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++T K K I V+ DTV+ K E V + + Q +++GKVL D+ +L
Sbjct: 1 MQITFKDFKKQKLTIDVEVDDTVLKTK---ETVASQKSCDVSQLKFVYSGKVLADDQSLG 57
Query: 61 DNKVSEDGFLVVMLSKSKTLGSAGASSAQPAHTTPPTTAPSSNSTPPQEASVPPPAPTPS 120
K+ E ++ M+SK+K A PPT A + +S+ + A+ P APTPS
Sbjct: 58 SYKIKEGDSIIYMISKAKKPVVPVAE--------PPTAATTGDSS--ESAASEPVAPTPS 107
Query: 121 IPASNVTSNVTAANANSDTYGQAASNLVAGNDLEQTIQQIMDMGGGTWDKETVTRALQAA 180
A + +A S G++ E TIQ IM+MG +D++ V +AL+AA
Sbjct: 108 ------------ATTVAPVSEEAGSAFAQGSEREATIQNIMEMG---YDRDQVEQALRAA 152
Query: 181 YNNPERAVDYLYSGIPET 198
+NNP RAV+YL +GIPE+
Sbjct: 153 FNNPHRAVEYLLTGIPES 170
>gi|325091544|gb|EGC44854.1| pre-mRNA-splicing factor Cwc24 [Ajellomyces capsulatus H88]
Length = 826
Score = 97.1 bits (240), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 90/291 (30%), Positives = 131/291 (45%), Gaps = 56/291 (19%)
Query: 3 LTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADN 62
L + LK F I +PS+TV VK+ I +G D QQ LI++GK+L+D T+
Sbjct: 443 LQIIDLKQQKFVIEAEPSETVGQVKEKISQEKGWD---VAQQKLIYSGKILQDANTIESY 499
Query: 63 KVSEDGFLVVMLSKSKTLGSAGASSAQPAHTTPPTTAPSSNSTPPQEASVPPPAPTPSIP 122
+ E GF+V M+SK K PA P T+A S+ P A P +
Sbjct: 500 NIEEKGFIVCMVSKPK-----------PA---PSTSAGVSSQAPSTPAPAAASTPAAAAH 545
Query: 123 ASN-VTSNVT-----------AANANSDTYGQAASNLVAGNDLEQTIQQIMDMGGGTWDK 170
SN +TS++T S T+ S L+ G EQ + Q+ MG + +
Sbjct: 546 RSNPLTSDITATPSPAAPVAAPVAGGSTTFND-PSALLMGPQGEQVVAQMESMG---FPR 601
Query: 171 ETVTRALQAAYNNPERAVDYLYSGIPETAEVAVPVAHFPASQAAETGAAGAAP--VSGVP 228
+ RA++AAY NP+RA++YL +GIPET + A + AAP + V
Sbjct: 602 SDIDRAMRAAYFNPDRAIEYLLNGIPETTQAEHREAAPATPATTTPSGSTAAPPTTAAVG 661
Query: 229 NSSPLNMFPQETLSGAP---------------------AGGLGSLDFLRNN 258
+ +N+F +GAP G LG+LDFLR+N
Sbjct: 662 DDEHINLFEAAAQAGAPQLGGAGRGARAAGQGLAPPAEGGNLGNLDFLRSN 712
>gi|388856731|emb|CCF49691.1| related to RAD23-nucleotide excision repair protein (ubiquitin-like
protein) [Ustilago hordei]
Length = 424
Score = 97.1 bits (240), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 65/197 (32%), Positives = 107/197 (54%), Gaps = 14/197 (7%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
MK+ +K+L G +F + + +DT+ +K I+ QG +P Q +I +GK+L D+ T+A
Sbjct: 1 MKILIKSLAGGNFHLDAELTDTIGTIKSKIQKEQG---HPPELQKIIFSGKILTDDKTVA 57
Query: 61 DNKVSEDGFLVVMLSKSKTLGSAGASSAQPAHTTPPTTAPSSNSTPPQEASVPPPAPTPS 120
D + E FLVVM+SK K A++ +P + P + + A+ T +
Sbjct: 58 DCNIKEKDFLVVMVSKPKAP-KPAAAADKPVESAPAAEEANKDDATAPAANTTATQSTTT 116
Query: 121 IPASNVTSNVTAANANSDTYGQAASNLVAGNDLEQTIQQIMDMGGGTWDKETVTRALQAA 180
P S+ T T +S ++ + G LE + +M+MG + +E V RA++AA
Sbjct: 117 SPISDSTEGQTTTGGDSGSF-------LTGGPLESAMSSMMEMG---FQREQVQRAMRAA 166
Query: 181 YNNPERAVDYLYSGIPE 197
+NNP+RAV+YL +GIPE
Sbjct: 167 FNNPDRAVEYLMTGIPE 183
>gi|50412599|ref|XP_457143.1| DEHA2B04180p [Debaryomyces hansenii CBS767]
gi|49652808|emb|CAG85137.1| DEHA2B04180p [Debaryomyces hansenii CBS767]
Length = 373
Score = 96.7 bits (239), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 67/198 (33%), Positives = 100/198 (50%), Gaps = 24/198 (12%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ K K I V SDTV+A K E + + + Q +++GKVL+DE TL
Sbjct: 1 MQIIFKDFKKQKIPIEVDLSDTVLATK---EKLASEKDCEVSQLKFVYSGKVLQDEKTLE 57
Query: 61 DNKVSEDGFLVVMLSKSKTLGSAGASSAQPAHTTPPTTAPSSNSTPPQEASVPPPAPTPS 120
K+ E ++ M+SK+K A PA T+ +S +T AS P A
Sbjct: 58 SFKIKEGDSIIFMISKAKKASPAPG----PAKAEEKTSTDASATTESTNASSTPAA---- 109
Query: 121 IPASNVTSNVTAANANSDTYGQAASNLVAGNDLEQTIQQIMDMGGGTWDKETVTRALQAA 180
AS ++N + + S G+D E TIQ IM+MG +++ + AL+AA
Sbjct: 110 --ASGASTNQQGS--------EPGSAFAQGDDREATIQNIMEMG---YERPQIEEALRAA 156
Query: 181 YNNPERAVDYLYSGIPET 198
+NNP RAV+YL +GIPE+
Sbjct: 157 FNNPHRAVEYLLTGIPES 174
>gi|444723953|gb|ELW64577.1| UV excision repair protein RAD23 like protein B [Tupaia chinensis]
Length = 302
Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 69/228 (30%), Positives = 109/228 (47%), Gaps = 40/228 (17%)
Query: 23 VMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVMLSKSKTLGS 82
V A+K+ IE +GKD +P Q LI+ GK+L D+T L + K+ E F+VVM++K K + +
Sbjct: 4 VKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALKEYKIDEKNFVVVMVTKPKAVTT 63
Query: 83 AGASS---------------------------------AQPAHTTPPTTAPSSNSTP--- 106
++ + PA TP +T SS P
Sbjct: 64 PAPTTTQQSNPATTTTVTSSTAPAVAQAPAPTPALAPASTPASITPVSTTVSSEPAPASA 123
Query: 107 -PQEASVPPPAPTPSIPASNVTSNVTAANANSDTYGQAASNLVAGNDLEQTIQQIMDMGG 165
QE PA TP + T + + ++ S+ + A S LV G E + +IM MG
Sbjct: 124 TKQEKPAEKPADTPVATSPTSTDSTSGDSSRSNLFEDATSALVTGQSYENMVTEIMSMG- 182
Query: 166 GTWDKETVTRALQAAYNNPERAVDYLYSGIPETAEVAVPVAHFPASQA 213
+++E V AL+A++NNP+RAV+YL I + E + + + P +A
Sbjct: 183 --YEREQVIAALRASFNNPDRAVEYLLMQISQHQEHFIQMLNEPVQEA 228
>gi|322794461|gb|EFZ17533.1| hypothetical protein SINV_80108 [Solenopsis invicta]
Length = 376
Score = 96.3 bits (238), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 71/201 (35%), Positives = 100/201 (49%), Gaps = 26/201 (12%)
Query: 3 LTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADN 62
L V+ G F I + S TV +K+ IE +G +P Q LI+ GK+L DE L +
Sbjct: 18 LIVEDYAGQTFTIEIDSSQTVKDLKEKIEMQKG---FPAEHQKLIYAGKILADEQPLTEY 74
Query: 63 KVSEDGFLVVMLSKSKTLGSAGASSAQPAH-------TTPPTTAPSSNSTPPQEASVPPP 115
+ E F+VVM++K K + S Q A T+ TT PSSN
Sbjct: 75 NIDEKKFIVVMVTKPKAGATPKTSEEQRAEGDKKEESTSSATTQPSSNLN---------- 124
Query: 116 APTPSIPASNVTSNVTAANANSDTYGQAASNLVAGNDLEQTIQQIMDMGGGTWDKETVTR 175
+ ASNV AA + A S L+ G D + IMDMG +++E V +
Sbjct: 125 IQDTTRAASNVQEQPAAAAPAAGQ---AESALLMGEDYNTMVNNIMDMG---YEREQVVQ 178
Query: 176 ALQAAYNNPERAVDYLYSGIP 196
AL+A++NNP+RAV+YL +GIP
Sbjct: 179 ALRASFNNPDRAVEYLLTGIP 199
>gi|410978807|ref|XP_003995779.1| PREDICTED: UV excision repair protein RAD23 homolog B isoform 2
[Felis catus]
Length = 387
Score = 96.3 bits (238), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 68/211 (32%), Positives = 105/211 (49%), Gaps = 40/211 (18%)
Query: 23 VMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVMLSKSKTLGS 82
V A+K+ IE +GKD +P Q LI+ GK+L D+T L + K+ E F+VVM++K K + +
Sbjct: 2 VKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALKEYKIDEKNFVVVMVTKPKAVTT 61
Query: 83 AGASSAQ---------------PAHTTPPTTAPS----------------SNSTP----- 106
++ Q PA PT+ P+ ++S P
Sbjct: 62 PAPATTQQSNPATTTTVSSTTAPAVVQVPTSPPALAPTPTPASITPASTTASSEPAPASA 121
Query: 107 -PQEASVPPPAPTPSIPASNVTSNVTAANANSDTYGQAASNLVAGNDLEQTIQQIMDMGG 165
QE PA TP + T + + ++ S+ + A S LV G E + +IM MG
Sbjct: 122 TKQEKPAEKPAETPVATSPTSTDSTSGDSSRSNLFEDATSALVTGQSYENMVTEIMSMG- 180
Query: 166 GTWDKETVTRALQAAYNNPERAVDYLYSGIP 196
+++E V AL+A++NNP+RAV+YL GIP
Sbjct: 181 --YEREQVIAALRASFNNPDRAVEYLLMGIP 209
>gi|156096789|ref|XP_001614428.1| DNA repair protein RAD23 [Plasmodium vivax Sal-1]
gi|148803302|gb|EDL44701.1| DNA repair protein RAD23, putative [Plasmodium vivax]
Length = 406
Score = 96.3 bits (238), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 70/205 (34%), Positives = 108/205 (52%), Gaps = 26/205 (12%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
MK+ V+TL+ + EI V DT++ VKK IE + PC +Q LI +G +LKDE+
Sbjct: 1 MKVKVRTLQNNEEEISVDNEDTILDVKKKIEVAFPE--MPCDKQKLIFSGNILKDESKAV 58
Query: 61 DNKVSEDGFLVVMLSKSKTLGSAGASSAQPAHTTPPTTAPSSNSTPPQEASVPPPAPTPS 120
D V ++ +V++++ K S + T +++ S+N +E TP
Sbjct: 59 D--VLKENDIVIVMACKKIFSSKN-------NQTKESSSSSANVLKSKEK-------TP- 101
Query: 121 IPASNVTSNV--TAAN--ANSDTYGQAASNLVAGNDLEQTIQQIMDMGGGTWDKETVTRA 176
+PA++ N TAA S A S LV G L++TI I MG +++E V +A
Sbjct: 102 LPANDDQKNAAPTAAEEGGQSKNLNNAESALVTGEKLKETIDNICAMG---FEREAVRKA 158
Query: 177 LQAAYNNPERAVDYLYSGIPETAEV 201
+ A+NNP RA+DYL +G P+ EV
Sbjct: 159 MMVAFNNPNRAIDYLTNGFPDENEV 183
>gi|195064359|ref|XP_001996553.1| GH23932 [Drosophila grimshawi]
gi|193892099|gb|EDV90965.1| GH23932 [Drosophila grimshawi]
Length = 470
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 76/241 (31%), Positives = 121/241 (50%), Gaps = 49/241 (20%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M +TVK L+ F I P TV+ +KK I + +G + Y +Q LI+ G +L DE T++
Sbjct: 1 MIITVKNLQQQTFSIDFDPEKTVLDLKKTIFNERGAE-YLVEKQKLIYAGVILTDERTIS 59
Query: 61 DNKVSEDGFLVVMLSKSKTLGSAGA--------SSAQPAHTTPPTTA------------- 99
KV E F+VVML++ ++ +G+ +SAQ T TTA
Sbjct: 60 SYKVDEKKFIVVMLTRDISVTGSGSITNTTDAVASAQR-KTQQETTAQPKAAAAESKAEA 118
Query: 100 -PSSNSTP-----------PQEASVPPPAPTPSIPASNVTS-NVTAAN----------AN 136
P+S S E+ V P + A+ T +VTA++ AN
Sbjct: 119 KPTSKSNAVAEGTTKTNKTTNESIVEPASTAAVAGAARATDVDVTASDYSSIDLVGELAN 178
Query: 137 SDTYGQAASNLVAGNDLEQTIQQIMDMGGGTWDKETVTRALQAAYNNPERAVDYLYSGIP 196
+ +A SNL+ G + +T+ +++MG + ++ V RA+ A++NNPERAV+YL +GIP
Sbjct: 179 ASLQTRAESNLLMGEEYNRTVASMIEMG---YARDQVERAMSASFNNPERAVEYLITGIP 235
Query: 197 E 197
+
Sbjct: 236 Q 236
>gi|358373285|dbj|GAA89884.1| UV excision repair protein [Aspergillus kawachii IFO 4308]
Length = 369
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 93/273 (34%), Positives = 140/273 (51%), Gaps = 33/273 (12%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
MKLT K LK F I +PS+TV VK+ I +G + Q LI++GK+L+D+ T+
Sbjct: 1 MKLTFKDLKQQKFVIDAEPSETVGQVKEKISKEKG---WEVPQLKLIYSGKILQDDKTIE 57
Query: 61 DNKVSEDGFLVVMLSKSKTLGSAGASSAQPAHTTPPTTAPSSNSTPPQEASVPPPAPTPS 120
+ E GF+V M+SK K S+G SS P + P+ A +S P + + TP+
Sbjct: 58 SYNIEEKGFIVCMVSKPKA-TSSGTSSQAP---STPSRAVTSTPAAPPAPAPSAASTTPA 113
Query: 121 IPASNVTSNVTAANANSDTYGQAASNLVAGNDLEQTIQQIMDMGGGTWDKETVTRALQAA 180
+P++ + AA A + S L++G E + Q+ MG D V RA++AA
Sbjct: 114 VPSTPSPAAAGAAQAQGSAFND-PSALLSGTQSEAVVAQMEAMGFARSD---VNRAMRAA 169
Query: 181 YNNPERAVDYLYSGIPETAEVAVPVAHFPASQAAETGAAGAAPVSGVPNSSPLNMFPQET 240
+ NP+RA++YL +GIPE + A+ A +T A +AP +G + P+N+F
Sbjct: 170 FFNPDRAIEYLLNGIPENIQQEQQQQA-AAASAPQTAAPESAPSAG--DDEPVNLFE--- 223
Query: 241 LSGAPAGG---------------LGSLDFLRNN 258
+ A AGG L SL+FLRNN
Sbjct: 224 -AAAQAGGQEGGARGARAAGGAELPSLEFLRNN 255
>gi|414589472|tpg|DAA40043.1| TPA: hypothetical protein ZEAMMB73_722140 [Zea mays]
Length = 225
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 54/104 (51%), Positives = 69/104 (66%), Gaps = 2/104 (1%)
Query: 163 MGGGTWDKETVTRALQAAYNNPERAVDYLYSGIPETAEVAV-PVAHFPASQAAETGAAGA 221
MGGG WD++TV RAL+ AYNNPERAV+YLYSGIPE +V P + P + AA
Sbjct: 1 MGGGIWDRDTVLRALRVAYNNPERAVEYLYSGIPEQMDVPTSPPSIQPVNPVQAAQAAQT 60
Query: 222 APVSGVPNSSPLNMFPQETLSGAPAGGLGSLDFLRNNQQVWSLL 265
A SG PN++PL++FPQ + + G G+LD LRNN Q +LL
Sbjct: 61 AAPSG-PNANPLDLFPQSLPNASANAGTGNLDVLRNNVQFQNLL 103
>gi|66363310|ref|XP_628621.1| RAD23p, UB+UBA domains protein [Cryptosporidium parvum Iowa II]
gi|46229830|gb|EAK90648.1| RAD23p, UB+UBA domains protein [Cryptosporidium parvum Iowa II]
Length = 362
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 65/197 (32%), Positives = 108/197 (54%), Gaps = 24/197 (12%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
MK+ ++T++ + E+ V+ ++ VK+ I+++ + LI G++L D T+
Sbjct: 22 MKIKIRTVQNTEMEVEVEADYSIEKVKQAIQELNPV--MEASRLKLIFAGRILNDSQTVQ 79
Query: 61 DNKVSEDGFLVVMLSKSKTLGSAGASSAQPAHTTPPTTAPSSNSTPPQEASVPPPAPTPS 120
D + E LVV+LSK S A+ +Q + ++N+ P
Sbjct: 80 DVGIKEGERLVVLLSKG---ASQKAAESQQNKQNNTSNESNTNTDPA------------- 123
Query: 121 IPASNVTSNVTAANANSD-TYGQAASNLVAGNDLEQTIQQIMDMGGGTWDKETVTRALQA 179
AS TSN+ A + NSD + AS L+ G +LE+TI I++MG +++E VTRA++A
Sbjct: 124 --ASATTSNIQAQSGNSDPSIDSRASALLTGTELEKTITNIVNMG---FEREQVTRAMRA 178
Query: 180 AYNNPERAVDYLYSGIP 196
A+NNP+RAV+YL SG+P
Sbjct: 179 AFNNPDRAVEYLTSGLP 195
>gi|323509241|dbj|BAJ77513.1| cgd7_4730 [Cryptosporidium parvum]
Length = 341
Score = 95.5 bits (236), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 65/197 (32%), Positives = 108/197 (54%), Gaps = 24/197 (12%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
MK+ ++T++ + E+ V+ ++ VK+ I+++ + LI G++L D T+
Sbjct: 1 MKIKIRTVQNTEMEVEVEADYSIEKVKQAIQELNPV--MEASRLKLIFAGRILNDSQTVQ 58
Query: 61 DNKVSEDGFLVVMLSKSKTLGSAGASSAQPAHTTPPTTAPSSNSTPPQEASVPPPAPTPS 120
D + E LVV+LSK S A+ +Q + ++N+ P
Sbjct: 59 DVGIKEGERLVVLLSKG---ASQKAAESQQNKQNNTSNESNTNTDPA------------- 102
Query: 121 IPASNVTSNVTAANANSD-TYGQAASNLVAGNDLEQTIQQIMDMGGGTWDKETVTRALQA 179
AS TSN+ A + NSD + AS L+ G +LE+TI I++MG +++E VTRA++A
Sbjct: 103 --ASATTSNIQAQSGNSDPSIDSRASALLTGTELEKTITNIVNMG---FEREQVTRAMRA 157
Query: 180 AYNNPERAVDYLYSGIP 196
A+NNP+RAV+YL SG+P
Sbjct: 158 AFNNPDRAVEYLTSGLP 174
>gi|195402315|ref|XP_002059752.1| GJ16257 [Drosophila virilis]
gi|194155966|gb|EDW71150.1| GJ16257 [Drosophila virilis]
gi|263359664|gb|ACY70500.1| hypothetical protein DVIR88_6g0037 [Drosophila virilis]
Length = 448
Score = 95.5 bits (236), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 76/268 (28%), Positives = 118/268 (44%), Gaps = 49/268 (18%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M +TVK L+ F I P TV+ +K+ I + +G + Y +Q LI+ G +L D+ T+
Sbjct: 1 MIITVKNLQQQTFTIDFDPEKTVLELKRQIFNERGAE-YFVEKQKLIYAGVILTDDRTIN 59
Query: 61 DNKVSEDGFLVVMLSKS---------KTLGSAGASSAQPAHTTPPTTAPSSNSTPPQE-- 109
KV E F+VVML++ + SS Q TT S+ P E
Sbjct: 60 SYKVDEKKFIVVMLTRDISGTSSGSSNNTNTEAVSSQQARKQAKETTERSTQDEPLVESK 119
Query: 110 --------------------------------ASVPPPAPTPSIPASNVTSNVTAANANS 137
A P PA T + ++ AN+
Sbjct: 120 PAVQVKESSSSKKGAKTNKITSEAGEEVGSTGAGSPAPASTTGSTTDYSSIDLVGELANT 179
Query: 138 DTYGQAASNLVAGNDLEQTIQQIMDMGGGTWDKETVTRALQAAYNNPERAVDYLYSGIPE 197
+A SNL+ G + +T+ +++MG + +E V RA+ A++NNPERAV+YL +GIP+
Sbjct: 180 SLQTRAESNLLMGEEFNRTVASMVEMG---YPREQVERAMAASFNNPERAVEYLINGIPQ 236
Query: 198 TAEVAVPVAHFPASQAA--ETGAAGAAP 223
+ P +S+A+ GAA P
Sbjct: 237 EENLFTPGDDEESSRASNIHQGAASDLP 264
>gi|195133968|ref|XP_002011410.1| GI14087 [Drosophila mojavensis]
gi|193912033|gb|EDW10900.1| GI14087 [Drosophila mojavensis]
Length = 442
Score = 95.5 bits (236), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 71/243 (29%), Positives = 114/243 (46%), Gaps = 45/243 (18%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M +T+K L+ F I P TV+ +K I +G + Y +Q LI+ G +L DE T++
Sbjct: 1 MIITIKNLQQQTFAIDFDPEKTVLELKNQIFYERGAE-YLVEKQKLIYAGVILTDERTIS 59
Query: 61 DNKVSEDGFLVVMLS-------------------------------KSKTLGSAGASSAQ 89
KV E F+VVMLS K L +A ASSA+
Sbjct: 60 SYKVDEKKFIVVMLSRDISGTSSNTNADGQRKQPNEQMEGSTTGIDKKPVLQNANASSAE 119
Query: 90 P--------AHTTPPTTAPSSNSTPPQEASVPPPAPTPSIPASNVTSNVTAANANSDTYG 141
++ S S+ + S P P P+ S++ ++ AN+
Sbjct: 120 KGIINNNNRSNDVLGVEIERSGSSSQTQISTAPEVPIPATDYSSI--DLVGELANASLQS 177
Query: 142 QAASNLVAGNDLEQTIQQIMDMGGGTWDKETVTRALQAAYNNPERAVDYLYSGIPETAEV 201
+A SNL+ G + +T+ +++MG + ++ V RA+ A++NNPERAV+YL +GIP+ +
Sbjct: 178 RAESNLLMGEEFNRTVASMVEMG---YPRDQVERAMAASFNNPERAVEYLINGIPQDENL 234
Query: 202 AVP 204
P
Sbjct: 235 FNP 237
>gi|221055233|ref|XP_002258755.1| dna repair protein rad23 [Plasmodium knowlesi strain H]
gi|193808825|emb|CAQ39527.1| dna repair protein rad23, putative [Plasmodium knowlesi strain H]
Length = 403
Score = 95.5 bits (236), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 73/237 (30%), Positives = 112/237 (47%), Gaps = 32/237 (13%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
MK+ V+TL+ + EI V DT++ VKK I + P +Q LI +G +LKDE+
Sbjct: 1 MKIKVRTLQNNEEEINVDNDDTILDVKKKIGVAFPE--MPYDKQKLIFSGNILKDESKAM 58
Query: 61 DNKVSEDGFLVVMLSKSKTLGSAGASSAQPAHTTPPTTAPSSNSTPPQEASVPPPAPTPS 120
D + E+ ++VM K K S + + + + + S+ P P+
Sbjct: 59 D-ILKENDIVIVMACK-KIFSSTKNNQTKESSSKDVIKSNEKASSLP-----------PN 105
Query: 121 IPASNVTSNVTAANANSDTYGQAASNLVAGNDLEQTIQQIMDMGGGTWDKETVTRALQAA 180
+N TSN + + A S LV G L++TI I MG +++ETV +A+ A
Sbjct: 106 CDQNNATSNAPEEGTENRSLNSAESALVTGEKLKETIDNICAMG---FERETVKKAMMMA 162
Query: 181 YNNPERAVDYLYSGIPETAEVAVPVAHFPASQAAETGAAGAAPVSGVPNSSPLNMFP 237
+NNP RA+DYL +G PE SQ E A ++G+ +PLN P
Sbjct: 163 FNNPNRAIDYLTNGFPE------------ESQVNEINAINT--ITGMNEMNPLNAMP 205
>gi|317138690|ref|XP_001817078.2| UV excision repair protein rhp23 [Aspergillus oryzae RIB40]
gi|391863231|gb|EIT72542.1| nucleotide excision repair factor NEF2, RAD23 component
[Aspergillus oryzae 3.042]
Length = 378
Score = 95.5 bits (236), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 95/288 (32%), Positives = 137/288 (47%), Gaps = 52/288 (18%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
MKLT K LK F I +PS+TV VK+ I +G + Q LI++GK+L+D+ +
Sbjct: 1 MKLTFKDLKQQKFVIDAEPSETVGQVKEKISKEKG---WEVPQLKLIYSGKILQDDKAIE 57
Query: 61 DNKVSEDGFLVVMLSKSKTLGSAGASSAQPAHTTPPTTAPSSNSTPPQEASVPPPAPTPS 120
+ E GF+V M+SK K ASS+ T P+ AP STP + A+ P AP
Sbjct: 58 SYNIEEKGFIVCMVSKPK------ASSS----TATPSQAP---STPSRAATSTPAAPPAP 104
Query: 121 IPASNVTSNVTAANAN-------SDTYGQAASNLVAGNDLEQTIQQIMDMGGGTWDKETV 173
P++N ++ A + SD S L++G+ E I + MG + ++ +
Sbjct: 105 APSTNASATAPPATPSPAAATQPSDAAFNDPSALLSGSQGEAVISHMESMG---FPRDDI 161
Query: 174 TRALQAAYNNPERAVDYLYSGIPETAEVAVPVAHF-----------PASQAAETGAAGAA 222
RA++AA+ NP RA++YL +GIPE + P AA G A
Sbjct: 162 NRAMRAAFFNPTRAIEYLLNGIPENIQQEQEQQQQQQQAATATAASPQPPAASAGGNAPA 221
Query: 223 PVSGVPNSSPLNMF-----------PQETLSGAPAG-GLGSLDFLRNN 258
G P+N+F P SG+ AG GL +LDFLRNN
Sbjct: 222 TTGG---EEPVNLFEAAAQAGTQEGPHGARSGSAAGEGLPNLDFLRNN 266
>gi|398407563|ref|XP_003855247.1| hypothetical protein MYCGRDRAFT_103502 [Zymoseptoria tritici
IPO323]
gi|339475131|gb|EGP90223.1| hypothetical protein MYCGRDRAFT_103502 [Zymoseptoria tritici
IPO323]
Length = 394
Score = 95.1 bits (235), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 70/203 (34%), Positives = 107/203 (52%), Gaps = 19/203 (9%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M+LT K LK + F I +PS+T+ +K IE +G + Q LI++GK+L+D+ T+
Sbjct: 1 MRLTFKDLKQAKFTIDAEPSETIGTLKSKIESEKG---WETSTQKLIYSGKILQDDNTIE 57
Query: 61 DNKVSEDGFLVVMLSKSKTLGSAGASSAQPAHTTPPTTAPSSNSTPPQEASVPPPAPTPS 120
K+ E GF+V M SK K A +PA P T AP S STP P AP S
Sbjct: 58 SYKIEEKGFIVCMTSKPK------APPTKPAE--PATPAPKSVSTP-----AVPAAPAQS 104
Query: 121 IPASNVTSNVTAANANSDTYGQAASNLVAGNDL---EQTIQQIMDMGGGTWDKETVTRAL 177
P++ T + A + G ++ + L EQ I +M + ++ + A+
Sbjct: 105 APSNTSQPPATPSPAPASAAGSEGTSWNDPSALALGEQRSAAIANMESMGFPRDQIDLAM 164
Query: 178 QAAYNNPERAVDYLYSGIPETAE 200
+AA+ NP+RAV+YL +GIP +A+
Sbjct: 165 RAAFFNPDRAVEYLLNGIPASAQ 187
>gi|259487698|tpe|CBF86570.1| TPA: UV excision repair protein (RadW), putative (AFU_orthologue;
AFUA_5G06040) [Aspergillus nidulans FGSC A4]
Length = 369
Score = 94.7 bits (234), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 73/203 (35%), Positives = 117/203 (57%), Gaps = 22/203 (10%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
MKLT + LK F I +PS+TV VK+ I +G D P + LI++GK+L+D+ T+
Sbjct: 1 MKLTFRDLKQQKFVIDAEPSETVGQVKEKISTEKGWD-VPSLK--LIYSGKILQDDKTVE 57
Query: 61 DNKVSEDGFLVVMLSKSKTLGSAGASSAQPAHTTPPTTAPSSNSTPPQEASVPPPAPTPS 120
+ E GF+V M+SK KT QP+ +P T A S STP + P T +
Sbjct: 58 FYNIEEKGFIVCMVSKPKT---------QPSSQSPSTPAKSVTSTPAPPPAPAPSTNTST 108
Query: 121 ------IPASNVTSNVTAANANSDTYGQAASNLVAGNDLEQTIQQIMDMGGGTWDKETVT 174
+PA+ ++ AA +++ T+ ++ L+ G+ E+ I Q+M MG +++E +
Sbjct: 109 TATSGPVPATPSPASSGAAQSSASTFNDPSA-LLTGSQSEEVINQMMSMG---FEREQIN 164
Query: 175 RALQAAYNNPERAVDYLYSGIPE 197
RA++AA+ NP+RA++YL +GIPE
Sbjct: 165 RAMRAAFFNPDRAIEYLLNGIPE 187
>gi|350634058|gb|EHA22422.1| hypothetical protein ASPNIDRAFT_204514 [Aspergillus niger ATCC
1015]
Length = 369
Score = 94.7 bits (234), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 90/272 (33%), Positives = 136/272 (50%), Gaps = 31/272 (11%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
MKLT K LK F I +PS+TV VK+ I +G + Q LI++GK+L+D+ T+
Sbjct: 1 MKLTFKDLKQQKFVIDAEPSETVGQVKEKISKEKG---WEVPQLKLIYSGKILQDDKTIE 57
Query: 61 DNKVSEDGFLVVMLSKSKTLGSAGASSAQPAHTTPPTTAPSSNSTPPQEASVPPPAPTPS 120
+ E GF+V M+SK K S+G SS P+ + T+ + P ++ PS
Sbjct: 58 SYNIEEKGFIVCMVSKPKA-TSSGTSSQAPSTPSRAVTSTPAAPPAPAPSAASTTPAVPS 116
Query: 121 IPASNVTSNVTAANANSDTYGQAASN---LVAGNDLEQTIQQIMDMGGGTWDKETVTRAL 177
P+ AA S G A ++ L++G E + Q+ MG D V RA+
Sbjct: 117 TPS-------PAAAGTSQAQGSAFNDPSALLSGTQSEAVVAQMEAMGFARSD---VNRAM 166
Query: 178 QAAYNNPERAVDYLYSGIPETAEVAVPVAHFPASQAAETGAAGAAPVSGVPNSSPLNMFP 237
+AA+ NP+RA++YL +GIPE + A+ A ++ A +AP +G + P+N+F
Sbjct: 167 RAAFFNPDRAIEYLLNGIPENIQQEQQQQA-AAASAPQSAAPESAPSAG--DDEPVNLFE 223
Query: 238 QETLSGAPAGG-----------LGSLDFLRNN 258
+G GG L SL+FLRNN
Sbjct: 224 AAAQAGGQEGGGRGARAAGGAELPSLEFLRNN 255
>gi|349803947|gb|AEQ17446.1| putative rad23b [Hymenochirus curtipes]
Length = 286
Score = 94.7 bits (234), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 64/196 (32%), Positives = 105/196 (53%), Gaps = 10/196 (5%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++T+KTL+ F+I + +TV A+K+ IE +GK+ +P Q LI+ GK+L D+T A
Sbjct: 1 MQITLKTLQQQTFKIDIDSEETVKALKEKIELEKGKEAFPVAGQKLIYAGKILNDDTATA 60
Query: 61 DNKVSEDGFLVVMLSKSKTLGSAGASSAQPAHTTPPTTAPSSNSTPPQEASVPPPAPTPS 120
+ +++ +A PA PT+ P++ + P +E P T S
Sbjct: 61 APAPASPPLTYTPIARQ----NAPVLPTVPAPAV-PTSEPTTTTAPKEEEKTDSPPETMS 115
Query: 121 IPASNVTSNVTAANANSDTYGQAASNLVAGNDLEQTIQQIMDMGGGTWDKETVTRALQAA 180
S+ +V + ++ + A S LV G E + +IM MG +++E V AL+A+
Sbjct: 116 --PSSTECSVPSDSSRPSLFVDATSALVTGQSYENMVTEIMSMG---YEREQVIAALRAS 170
Query: 181 YNNPERAVDYLYSGIP 196
+NNP+RAV+YL GIP
Sbjct: 171 FNNPDRAVEYLLVGIP 186
>gi|449546744|gb|EMD37713.1| hypothetical protein CERSUDRAFT_83454 [Ceriporiopsis subvermispora
B]
Length = 363
Score = 94.7 bits (234), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 73/208 (35%), Positives = 112/208 (53%), Gaps = 16/208 (7%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
MKLTVKTL+ F I + SDTV +K+ I + QG + Q +I++GK+L D T+
Sbjct: 1 MKLTVKTLQQKVFHIDAEGSDTVADIKQKISESQG---HAVESQKIIYSGKILPDTKTIE 57
Query: 61 DNKVSEDGFLVVMLSKSKTLGSAGASSAQPAHTTPPTTAPSSNSTPPQEAS--------V 112
++ E FLV+M+SK K + ASS+ T P A S + + V
Sbjct: 58 SCEIKEKDFLVLMVSKPKPTAAPAASSSTSTTTATPAPAVPSPAPTAPSPAPAATTPAAV 117
Query: 113 PPPAPTPSIPASNVTSNVTAANANSDTYGQAASNLVAGNDLEQTIQQIMDMGGGTWDKET 172
PP P + + T A G +S V G+ L+Q+IQ +++MG ++++
Sbjct: 118 QPPN-APLLAPAPATPVAAPQPAQERALGDLSS-FVTGDALQQSIQNMIEMG---FERDQ 172
Query: 173 VTRALQAAYNNPERAVDYLYSGIPETAE 200
V RAL+A++NNP+RAV+YL++GIP E
Sbjct: 173 VMRALRASFNNPDRAVEYLFNGIPAHLE 200
>gi|392593502|gb|EIW82827.1| UV excision repair protein Rad23 [Coniophora puteana RWD-64-598
SS2]
Length = 424
Score = 94.7 bits (234), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 68/196 (34%), Positives = 104/196 (53%), Gaps = 6/196 (3%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
MK+TVKTL+ F I +PS++V +K+ I QG D Q LI++GKVL D ++A
Sbjct: 1 MKITVKTLQQKVFTIDAEPSNSVQELKEKISKEQGHD---VSSQKLIYSGKVLADTKSVA 57
Query: 61 DNKVSEDGFLVVMLSKSKTLGSAGASSAQPAHTTPPTTAPSSNSTPPQEASVPPPAPTPS 120
+ ++ E FLV+M++K K + + APS+ S P ++ P
Sbjct: 58 ECEIKEKDFLVLMVAKPKPSFAPPPAPVAAPAPAAQPEAPSAPSPAPAPSAPAPADAPAV 117
Query: 121 IPASNVTSNVTAANANSDTYGQAASNLVAGNDLEQTIQQIMDMGGGTWDKETVTRALQAA 180
A + ++ T + G L T+Q IM+MG +++E V RAL+A+
Sbjct: 118 PSAPSPAPAAAPTGGDAPTQPSNNDGFLTGAALNATVQNIMEMG---FEREQVQRALRAS 174
Query: 181 YNNPERAVDYLYSGIP 196
YNNPERAV+YL++GIP
Sbjct: 175 YNNPERAVEYLFNGIP 190
>gi|315049547|ref|XP_003174148.1| nucleotide excision repair protein RAD23 [Arthroderma gypseum CBS
118893]
gi|311342115|gb|EFR01318.1| nucleotide excision repair protein RAD23 [Arthroderma gypseum CBS
118893]
Length = 380
Score = 94.4 bits (233), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 92/278 (33%), Positives = 139/278 (50%), Gaps = 33/278 (11%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
MKLT + LK F I +PS+ ++ VK+ I +G +P QQ LI++GK+L+D+ T+
Sbjct: 1 MKLTFRDLKQQKFVIEAEPSEKILDVKEKIATEKG---WPASQQKLIYSGKILQDDNTVE 57
Query: 61 DNKVSEDGFLVVMLSKSKTLGSAGASSAQPAHTTPPTTAPSSNSTPPQEASVPPPAPTPS 120
+ E GF+V M+SK K + A+++ AP+ + PP TP+
Sbjct: 58 SYSIEEKGFIVCMVSKPKAAAPSAAAASSSQTPAAAPPAPTPATPSAPARVNAPPLQTPA 117
Query: 121 IPASNVTSNVTAANANSDTYGQAASNLVAGNDLEQTIQQIMDMGGGTWDKETVTRALQAA 180
P+ ++ A++ T+ S L+ GN ++ I Q++ MG D + RA++AA
Sbjct: 118 TPSPAGGASSGASSGA--TFND-PSALLMGNQGQEAITQMLAMGFSRGD---IDRAMRAA 171
Query: 181 YNNPERAVDYLYSGIPETAEVAVPVAHFPASQAAETGAAGAAPVSGVPNSSPLNMFPQ-- 238
Y NP+RA++YL +GIP+ E P A A+ +A A A S V S LN+F Q
Sbjct: 172 YFNPDRAIEYLLNGIPDEPEREAPSAP--AAGSARPAATEGASESQVQES--LNLFEQAA 227
Query: 239 ------------------ETLSGAPAGGLGSLDFLRNN 258
SG AG LGSL+FLRNN
Sbjct: 228 AQASGGGSGRSRGAGAGAGAGSGESAGSLGSLEFLRNN 265
>gi|67621260|ref|XP_667750.1| RAD 23B protein [Cryptosporidium hominis TU502]
gi|54658903|gb|EAL37511.1| RAD 23B protein - channel catfish [Cryptosporidium hominis]
Length = 341
Score = 94.4 bits (233), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 64/197 (32%), Positives = 107/197 (54%), Gaps = 24/197 (12%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
MK+ ++T++ + E+ V+ ++ VK+ I+++ + LI G++L D T+
Sbjct: 1 MKIKIRTVQNTEMEVEVEADYSIEKVKQAIQELNPV--MEASRLKLIFAGRILNDSQTVQ 58
Query: 61 DNKVSEDGFLVVMLSKSKTLGSAGASSAQPAHTTPPTTAPSSNSTPPQEASVPPPAPTPS 120
D + E LVV+LSK S A+ +Q + ++N+ P
Sbjct: 59 DVGIKEGERLVVLLSKG---ASQKAAESQQNKQNNTSNESNTNTDPA------------- 102
Query: 121 IPASNVTSNVTAANANSD-TYGQAASNLVAGNDLEQTIQQIMDMGGGTWDKETVTRALQA 179
AS TSN+ + NSD + AS L+ G +LE+TI I++MG +++E VTRA++A
Sbjct: 103 --ASATTSNIQTQSGNSDPSIDSRASALLTGTELEETITNIVNMG---FEREQVTRAMRA 157
Query: 180 AYNNPERAVDYLYSGIP 196
A+NNP+RAV+YL SG+P
Sbjct: 158 AFNNPDRAVEYLTSGLP 174
>gi|406602239|emb|CCH46169.1| putative DNA repair protein RAD23-3 [Wickerhamomyces ciferrii]
Length = 394
Score = 93.6 bits (231), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 63/196 (32%), Positives = 106/196 (54%), Gaps = 12/196 (6%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ K K I ++P++TV+ K+ + V+G + Q +++GKVL+D+ T+
Sbjct: 1 MQVIFKDFKKEKIPIELEPTETVLQAKEKLAQVKGVE---VKQLKFVYSGKVLQDDKTIE 57
Query: 61 DNKVSEDGFLVVMLSK-SKTLGSAGASSAQPAHTTPPTTAPSSNSTPPQEASVPPPAPTP 119
K+ D ++ M+SK + + AS+ PA PT P++ S P Q ++ PAP P
Sbjct: 58 STKIKADDQVIFMISKVAAKKPTPAASTPTPAPAAQPTQ-PTAQSAPVQPSTRTVPAPAP 116
Query: 120 SIPASNVTSNVTAANANSDTYGQAASNLVAGNDLEQTIQQIMDMGGGTWDKETVTRALQA 179
S ++ T + A AS G+ E+ I IM+MG +++ V +AL+A
Sbjct: 117 SSQSAQPTPSQQPEQAGDFD----ASTFATGSAREKAIANIMEMG---YERPQVEQALRA 169
Query: 180 AYNNPERAVDYLYSGI 195
A+NNP+RAV+YL +GI
Sbjct: 170 AFNNPDRAVEYLLTGI 185
>gi|403418377|emb|CCM05077.1| predicted protein [Fibroporia radiculosa]
Length = 214
Score = 93.6 bits (231), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 75/220 (34%), Positives = 121/220 (55%), Gaps = 20/220 (9%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
MK+TVKTL+ F+I + SDTV +KK I+D QG + Q LI++GK+L D T+
Sbjct: 1 MKITVKTLQQKVFQIDAEGSDTVADLKKKIQDNQG---HTIESQKLIYSGKILPDSKTVE 57
Query: 61 DNKVSEDGFLVVMLSKSK---TLGSAGASSAQPAHTTPPTTAPSSNSTPPQEASVPPPAP 117
++ E FLV+M+SK K L +A S++ A ++P + + P P+
Sbjct: 58 SCEIKEKDFLVLMVSKPKNVTNLPAASTSTSIAATSSPAPVPAPAPAPQPVSEPPSVPSA 117
Query: 118 TPSIPASNVTSNVTAANAN---SDTYGQA---ASNLVAGNDLEQTIQQIMDMGGGTWDKE 171
P +T A A + T QA +++ + G L+ TIQ +M+MG ++++
Sbjct: 118 PSPAPQPPNAPILTPAQAQPIAAPTTEQAFNDSNSFLTGEALQSTIQNMMEMG---FERD 174
Query: 172 TVTRALQAAYNNPERAVDYLYSGIPET---AEVAVPVAHF 208
V RAL+A++NNP+RAV+YL+ + E+ + VP+ HF
Sbjct: 175 QVMRALRASFNNPDRAVEYLF-NVRESLLHVDFTVPI-HF 212
>gi|392576824|gb|EIW69954.1| hypothetical protein TREMEDRAFT_68394 [Tremella mesenterica DSM
1558]
Length = 379
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 68/199 (34%), Positives = 106/199 (53%), Gaps = 16/199 (8%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
+K+T+KT++ F + + ++TV VK+ IE+ Q +P QQ +I++GK+L+D+T++
Sbjct: 2 VKITLKTVQNKLFTVEAEEAETVGDVKRKIEESQ---TFPVEQQKIIYSGKILQDDTSIG 58
Query: 61 DNKVSEDGFLVVMLSKSKTLGSAGASSAQPAHTTPPTTAPSSNSTPPQEASVPPPAPTPS 120
K+ E FLVVM+SK K A P PT P
Sbjct: 59 SLKIKEKDFLVVMVSKPK---------AAPKPVATPTPTEPPAPVASASEVTPAAPAASP 109
Query: 121 IPASNVTSNVTAANANSDTYGQAASNLVAGNDLEQTIQQIMDMGGGTWDKETVTRALQAA 180
I + T+ AA + G ++S+ V G L+ I +++MG ++ + V RAL+A+
Sbjct: 110 IAGLDTTAAAPAAETATSATGLSSSSFVTGPALQAAISSMVEMG---FEHDQVVRALRAS 166
Query: 181 YNNPERAVDYLYSG-IPET 198
YNNP+RAVDYL SG IPE
Sbjct: 167 YNNPDRAVDYLMSGNIPEV 185
>gi|71022291|ref|XP_761375.1| hypothetical protein UM05228.1 [Ustilago maydis 521]
gi|46097608|gb|EAK82841.1| hypothetical protein UM05228.1 [Ustilago maydis 521]
Length = 447
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 68/226 (30%), Positives = 117/226 (51%), Gaps = 35/226 (15%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
MK+ +K+L G +F + + +DT+ +K I++ QG + Q +I +GK+L D+ T+A
Sbjct: 1 MKILIKSLAGGNFHLDAELTDTIGTIKSKIQNEQG---HAPELQKIIFSGKILTDDKTVA 57
Query: 61 DNKVSEDGFLVVMLSKSKTL--GSAGASSAQPAHTTPPTTAPSSNSTPPQEASVPPPAPT 118
D K+ E FLVVM+SK K +AGAS++ A P A + + A+ P
Sbjct: 58 DCKIKEKDFLVVMVSKPKAPKPATAGASTSVAAPEKPTEAALAPAPDAARAAAEAPKGQD 117
Query: 119 PSIPASNVTSNV---------------------------TAANANSDTYGQAASNLVAGN 151
++P S+ +S T ++A + + + + G
Sbjct: 118 AAVPTSDSSSPATTATAAATTTAAAAAAAADAPASAESATPSSAQTQQPSGTSGSFLTGG 177
Query: 152 DLEQTIQQIMDMGGGTWDKETVTRALQAAYNNPERAVDYLYSGIPE 197
LE +Q +++MG ++++ V RA++AA+NNP+RAV+YL +GIPE
Sbjct: 178 ALESAMQSMVEMG---FERDQVQRAMRAAFNNPDRAVEYLMTGIPE 220
>gi|226291157|gb|EEH46585.1| hypothetical protein PADG_02683 [Paracoccidioides brasiliensis
Pb18]
Length = 379
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 86/281 (30%), Positives = 128/281 (45%), Gaps = 39/281 (13%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
MKLT + LK F I +PS+T+ +K+ I +G D Q LI++GK+L+DE T+
Sbjct: 1 MKLTFRDLKQQKFVIEAEPSETIGQLKERISQERGWD---VALQKLIYSGKILQDENTIE 57
Query: 61 DNKVSEDGFLVVMLSKSKTLGSAGASSAQPAHTTPPTTAPSSNSTPPQEASVPPPAPTPS 120
+ E GF+V M++K KT A SS P+ TP + + P T +
Sbjct: 58 SYNIEEKGFIVCMVTKPKTTTPAATSSQAPSTPTPAVASTPAAPAPASNPQPTDAPATTT 117
Query: 121 IPASNVTSNVTAANANSDTYGQAASNLVAGNDLEQTIQQIMDMGGGTWDKETVTRALQAA 180
A +D S L+ G EQ I Q+ MG + + + RA++AA
Sbjct: 118 PAAPAPAPAAAGGATFND-----PSALLMGPQGEQVIAQMESMG---FPRSDIDRAMRAA 169
Query: 181 YNNPERAVDYLYSGIPETAEVAVPVAHFPASQAAETGAAGAAPVSGVPNSSPLNMFP--- 237
+ NP+RA++YL +GIPET++ A + A T +G A + +N+F
Sbjct: 170 FFNPDRAIEYLLNGIPETSQ-----AEQREAAPATTAPSGPAAPAATGGDEHVNLFEAAA 224
Query: 238 --------------QETLSGAPA------GGLGSLDFLRNN 258
+ T G A G LG+LDFLRNN
Sbjct: 225 QAGAPQGGGAGRGARATGQGLAAAAEGQQGSLGNLDFLRNN 265
>gi|225679426|gb|EEH17710.1| conserved hypothetical protein [Paracoccidioides brasiliensis Pb03]
Length = 379
Score = 92.8 bits (229), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 86/281 (30%), Positives = 128/281 (45%), Gaps = 39/281 (13%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
MKLT + LK F I +PS+T+ +K+ I +G D Q LI++GK+L+DE T+
Sbjct: 1 MKLTFRDLKQQKFVIEAEPSETIGQLKERISQERGWD---VALQKLIYSGKILQDENTIE 57
Query: 61 DNKVSEDGFLVVMLSKSKTLGSAGASSAQPAHTTPPTTAPSSNSTPPQEASVPPPAPTPS 120
+ E GF+V M++K KT A SS P+ TP + + P T +
Sbjct: 58 SYNIEEKGFIVCMVTKPKTTTPAATSSQAPSTPTPAVASTPAAPAPASNPQPTDAPATST 117
Query: 121 IPASNVTSNVTAANANSDTYGQAASNLVAGNDLEQTIQQIMDMGGGTWDKETVTRALQAA 180
A +D S L+ G EQ I Q+ MG + + + RA++AA
Sbjct: 118 PAAPAPAPAAAGGATFND-----PSALLMGPQGEQVIAQMESMG---FPRSDIDRAMRAA 169
Query: 181 YNNPERAVDYLYSGIPETAEVAVPVAHFPASQAAETGAAGAAPVSGVPNSSPLNMFP--- 237
+ NP+RA++YL +GIPET++ A + A T +G A + +N+F
Sbjct: 170 FFNPDRAIEYLLNGIPETSQ-----AEQREAAPATTAPSGPAAPAATGGDEHVNLFEAAA 224
Query: 238 --------------QETLSGAPA------GGLGSLDFLRNN 258
+ T G A G LG+LDFLRNN
Sbjct: 225 QAGAPQGGGAGRGARATGQGLAAAAEGQQGSLGNLDFLRNN 265
>gi|395333137|gb|EJF65515.1| UV excision repair protein Rad23 [Dichomitus squalens LYAD-421 SS1]
Length = 396
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 73/227 (32%), Positives = 112/227 (49%), Gaps = 55/227 (24%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
MK+TVKTL+ F+I + SDTV +K+ I++ QG + Q LI++GKVL D T+
Sbjct: 1 MKITVKTLQQKVFQIDAEGSDTVGDLKRKIQETQG---HALESQKLIYSGKVLPDSKTVE 57
Query: 61 DNKVSEDGFLVVMLSKSK---------TLGSAGASSAQPAHTTPPTTAPSSNS------- 104
++ E FLV+M+SK K T G+ A++ A P +S++
Sbjct: 58 SCEIKEKDFLVLMVSKPKPAPSNAPPVTSGAPVAAAPPAAAAPAPVPQATSSATALAPAP 117
Query: 105 -----------TPPQEASVPPPAPTPSIPASNVTSNVTAANANSDTYGQAASNLVAGNDL 153
TP Q A + AP P+ S +T G L
Sbjct: 118 AAPQPPNAPILTPAQAAPIEGAAPVPAGDGSFLT----------------------GEAL 155
Query: 154 EQTIQQIMDMGGGTWDKETVTRALQAAYNNPERAVDYLYSGIPETAE 200
+ T+ +++MG +++E V RAL+A++NNPERAV+YL++GIP E
Sbjct: 156 QSTVNNMIEMG---FEREQVMRALRASFNNPERAVEYLFNGIPAHLE 199
>gi|407926704|gb|EKG19665.1| Ubiquitin-associated/translation elongation factor EF1B
[Macrophomina phaseolina MS6]
Length = 383
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 71/201 (35%), Positives = 109/201 (54%), Gaps = 15/201 (7%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
MKLT K LK F I +PS+T+ VK I +G + +Q LI++GK+L+D+ T+
Sbjct: 1 MKLTFKDLKQQKFVIEAEPSETIADVKAKISAEKG---WEADKQKLIYSGKILQDDKTVE 57
Query: 61 DNKVSEDGFLVVMLSKSKTLGSAGASSAQPAHTTPPTTAPSSNSTP--PQEASVPPPAPT 118
+ E GF+V M+ K K +A AS A + P P+ STP P ++S AP+
Sbjct: 58 SYNIEEKGFIVCMIQKPKPQPAASASK---AAPSTPAREPAQASTPSAPAQSS----APS 110
Query: 119 PSIPASNVTSNVTAANANSDTYGQAASNLVAGNDLEQTIQQIMDMGGGTWDKETVTRALQ 178
++PA+ + A + S+L G + E I + MG + + + RA++
Sbjct: 111 SNVPATPSPAPAAPQAAGTPQQFNNPSSLTMGPEREAAIANMESMG---FPRADIDRAMR 167
Query: 179 AAYNNPERAVDYLYSGIPETA 199
AAY NP+RAV+YL +GIPE+A
Sbjct: 168 AAYFNPDRAVEYLLTGIPESA 188
>gi|212535726|ref|XP_002148019.1| UV excision repair protein (RadW), putative [Talaromyces marneffei
ATCC 18224]
gi|210070418|gb|EEA24508.1| UV excision repair protein (RadW), putative [Talaromyces marneffei
ATCC 18224]
Length = 372
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 72/200 (36%), Positives = 104/200 (52%), Gaps = 13/200 (6%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
MKLT + LK F I +PS+TV VK+ I +G + QQ LI++GK+L+D T+
Sbjct: 1 MKLTFRDLKQQKFTIEAEPSETVGQVKEKIAQEKG---WEASQQKLIYSGKILQDANTIE 57
Query: 61 DNKVSEDGFLVVMLSKSKTLGSAGASSAQPAHTTPPTTAPSSNSTPPQEASVPPPAPTPS 120
+ E GF+V M+SK K +AG S T + + + P A+VP TP+
Sbjct: 58 SYNIEEKGFIVCMVSKPKP--AAGGPSTPARAAPAATPSAPAPAPPASTAAVPQVPSTPT 115
Query: 121 IPASNVTSNVTAANANSDTYGQAASNLVAGNDLEQTIQQIMDMGGGTWDKETVTRALQAA 180
+S + A A +D S L G E I Q+ MG + + + RA++AA
Sbjct: 116 PASSGAAAASGEAPAFND-----PSALAMGTQGEAVISQMEAMG---FPRADIDRAMRAA 167
Query: 181 YNNPERAVDYLYSGIPETAE 200
+ NP+RAVDYL +GIPE E
Sbjct: 168 FFNPDRAVDYLLNGIPENIE 187
>gi|353237727|emb|CCA69693.1| related to RAD23-nucleotide excision repair protein (ubiquitin-like
protein) [Piriformospora indica DSM 11827]
Length = 408
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 71/196 (36%), Positives = 106/196 (54%), Gaps = 7/196 (3%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
MK+T+KTL+ F + V+P TV A+K+ I + G +P Q LI++GKVL D +
Sbjct: 1 MKITIKTLQQKLFTVDVEPEQTVQAIKEKINEEHG---HPVASQKLIYSGKVLDDAKVVK 57
Query: 61 DNKVSEDGFLVVMLSKSKTLGSAGASSAQPAHTTPPTTAPSSNSTPPQEASVPPPAPTPS 120
D E FLV+M+SK+K +A S+A + T+ P P S A +
Sbjct: 58 DCNFKEKDFLVLMVSKAKAAPAASTSAAASSSTSAPAAPAQPAQPPAASTSNAMDATPTT 117
Query: 121 IPASNVTSNVTAANANSDTYGQAASNLVAGNDLEQTIQQIMDMGGGTWDKETVTRALQAA 180
ASN + A + G S + G+ LE IQ +MDMG +++ V RA++A+
Sbjct: 118 TTASNPQPASESTTAAAAAPGSDTS-FLTGSALETAIQGLMDMG---FERPQVERAMRAS 173
Query: 181 YNNPERAVDYLYSGIP 196
+NNP+RA DYL++GIP
Sbjct: 174 FNNPDRAADYLFNGIP 189
>gi|389741638|gb|EIM82826.1| UV excision repair protein Rad23 [Stereum hirsutum FP-91666 SS1]
Length = 395
Score = 91.7 bits (226), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 70/197 (35%), Positives = 112/197 (56%), Gaps = 12/197 (6%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
MK+TVKTL+ F++ + S+TV +KK I D+QG +P Q +I++GKVL D+ T+
Sbjct: 1 MKITVKTLQQKVFQLDAEGSETVGDLKKKINDLQG---HPVENQKIIYSGKVLPDDKTVE 57
Query: 61 DNKVSEDGFLVVMLSKSKTLGSAGASSAQPAHTTPPTTAPSSNSTPPQEASVPPPAPTPS 120
+ E FLV+M+SK K +A +S+A T + P A+ P+
Sbjct: 58 SCNIKEKDFLVLMVSKPKATPAASSSTAAAPSTPAAPAPSTPQPAPATPAAP-----APA 112
Query: 121 IPASNVTSNVTAANANSDTYGQAASNLVAGNDLEQTIQQIMDMGGGTWDKETVTRALQAA 180
A+ + A A +G +S + GN L+ +IQ +++MG + ++ V RA++A+
Sbjct: 113 PAAAAPAATTPAPAATPAQFGDMSS-FLTGNALQSSIQNMVEMG---FPRDQVLRAMRAS 168
Query: 181 YNNPERAVDYLYSGIPE 197
YNNP+RAV+YL +GIPE
Sbjct: 169 YNNPDRAVEYLMTGIPE 185
>gi|444315840|ref|XP_004178577.1| hypothetical protein TBLA_0B02160 [Tetrapisispora blattae CBS 6284]
gi|387511617|emb|CCH59058.1| hypothetical protein TBLA_0B02160 [Tetrapisispora blattae CBS 6284]
Length = 404
Score = 91.7 bits (226), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 64/202 (31%), Positives = 100/202 (49%), Gaps = 19/202 (9%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
+ L K K + + T+ + K I + N Q LI++GK+LK++ T+
Sbjct: 2 VSLIFKDFKKEKIPLELDADSTIESAKGQI---ASEKNCDIDQIKLIYSGKILKNDATIL 58
Query: 61 DNKVSEDGFLVVMLSKSKTLGSAGASSAQPAHTTPPTTAPSSNSTPPQEA-----SVPPP 115
++ + ++ ++ M+SK K +PA T T S + +A S P
Sbjct: 59 NSGLKDNDHIIFMISKKK-------KKTEPASTVKVTEPASVTTNVETQAEGTPNSDPSA 111
Query: 116 APTPSIPASNVTSNVTAANANSDTYGQAASNLVAGNDLEQTIQQIMDMGGGTWDKETVTR 175
TP +PA+ TSN A + T A V G + +TIQ+IM+MG + +E V
Sbjct: 112 NATPEVPAA-TTSNAAAGDDTETTTSAADPGFVVGTERNETIQRIMEMG---YQREEVEA 167
Query: 176 ALQAAYNNPERAVDYLYSGIPE 197
AL+AA+NNP+RAV+YL GIPE
Sbjct: 168 ALRAAFNNPDRAVEYLLMGIPE 189
>gi|295665738|ref|XP_002793420.1| hypothetical protein PAAG_04949 [Paracoccidioides sp. 'lutzii'
Pb01]
gi|226278334|gb|EEH33900.1| hypothetical protein PAAG_04949 [Paracoccidioides sp. 'lutzii'
Pb01]
Length = 375
Score = 91.7 bits (226), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 89/285 (31%), Positives = 132/285 (46%), Gaps = 51/285 (17%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
MKLT + LK F I +PS+T+ +K+ I +G D Q LI++GK+L+DE T+
Sbjct: 1 MKLTFRDLKQQKFVIEAEPSETIGQLKERISQERGWD---VALQKLIYSGKILQDENTIE 57
Query: 61 DNKVSEDGFLVVMLSKSKTLGSAGASSAQPAHTTPPTTAPSSNSTPPQEASVPPPAPTPS 120
+ E GF+V M++K KT TTP T+ + STP + P AP P+
Sbjct: 58 SYNIEEKGFIVCMVTKPKT-------------TTPAATSSQAPSTPAPAVASTPAAPAPA 104
Query: 121 IPASNVTSNVTAANANSDTYGQAASN----LVAGNDLEQTIQQIMDMGGGTWDKETVTRA 176
+ T + A G A N L+ G EQ I Q+ MG + + + RA
Sbjct: 105 SNPQTTDAPATTSPAAPAAAGGATFNDPSALLMGPQGEQVIAQMESMG---FPRSDIDRA 161
Query: 177 LQAAYNNPERAVDYLYSGIPETAEVAVPVAHFPASQAAETGAAGAAPVSGVPNSSPLNMF 236
++AA+ NP+RA++YL +GIPET++ A + A T +G A + +N+F
Sbjct: 162 MRAAFFNPDRAIEYLLNGIPETSQ-----AEQREAAPATTAPSGPAAPAATGGDEHVNLF 216
Query: 237 PQE-----------------------TLSGAPAGGLGSLDFLRNN 258
T + G LG+LDFLRNN
Sbjct: 217 EAAAQAGAPQGGGAGRGARATGQGLATAAEGQGGSLGNLDFLRNN 261
>gi|303319113|ref|XP_003069556.1| UV excision repair protein rhp23, putative [Coccidioides posadasii
C735 delta SOWgp]
gi|240109242|gb|EER27411.1| UV excision repair protein rhp23, putative [Coccidioides posadasii
C735 delta SOWgp]
Length = 371
Score = 91.7 bits (226), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 73/203 (35%), Positives = 110/203 (54%), Gaps = 21/203 (10%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
MKLT + LK F I +PS+T+ +K+ I +G D QQ LI++GK+L+D T+
Sbjct: 1 MKLTFRDLKQQKFTIEAEPSETIGQLKEKISQEKGWD---AAQQKLIYSGKILQDVNTIE 57
Query: 61 DNKVSEDGFLVVMLSKSKTLGSAGASSAQPAHTTPPTTAPSSNSTPPQEASVPPPAPTPS 120
+ E GF+V M+SK K AQPA +TP PS P S P P+
Sbjct: 58 SYNIEEKGFIVCMVSKPK---------AQPAPSTP--AGPSQTPATPAAPSSTPATPSAP 106
Query: 121 IPASNVTSNVTAANANSD---TYGQAASNLVAGNDLEQTIQQIMDMGGGTWDKETVTRAL 177
PA+N S A + + T+ ++ L+ G E +QQ+ MG + ++ + RA+
Sbjct: 107 APATNAPSAPPATPSPATAGATFNDPSA-LLMGPQSETAVQQMEAMG---FARDDIQRAM 162
Query: 178 QAAYNNPERAVDYLYSGIPETAE 200
+AA+ NP+RA++YL SGIP+ AE
Sbjct: 163 RAAFFNPDRAIEYLLSGIPDHAE 185
>gi|330912967|ref|XP_003296143.1| hypothetical protein PTT_04968 [Pyrenophora teres f. teres 0-1]
gi|311331971|gb|EFQ95765.1| hypothetical protein PTT_04968 [Pyrenophora teres f. teres 0-1]
Length = 384
Score = 91.3 bits (225), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 93/285 (32%), Positives = 135/285 (47%), Gaps = 42/285 (14%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
MK+T K LK + F I +PS+T+ A+K I+ +G + QQ LI++GK+L+D T+
Sbjct: 1 MKITFKDLKQNKFVIEAEPSETIGALKAKIQADKG---WEVTQQKLIYSGKILQDANTVE 57
Query: 61 DNKVSEDGFLVVMLSKSKTLGSAGASSAQPAHTTPPTTAPSSNSTPPQEASVPPPAPTPS 120
+ E GF+V M+SK K +A A+S+ + P T AP + TP ++ S
Sbjct: 58 SYNIEEKGFIVCMVSKPKAAPAAAAASS--SRAVPSTPAPVAAQTPAAPSA----PAPSS 111
Query: 121 IPASNVTSNVTAANANSDTYGQAASNLVAGNDLEQTIQQIMDMGGGTWDKETVTRALQAA 180
P + + A S S L G + E I + MG D + RA++AA
Sbjct: 112 NPQNAPATPSPAPAQASGERFNDPSALTMGGEREAAIANMESMGFARAD---IDRAMRAA 168
Query: 181 YNNPERAVDYLYSGIPET--------AEVAVPVAHFPASQAAETGAAGAAPVSGVPNSSP 232
+ NP+RAV+YL +GIPE+ A+ P + PA T A AP SG P
Sbjct: 169 FFNPDRAVEYLLTGIPESALQEQAQQAQARAPTSPTPAGNTGATAAPANAP-SGA--DEP 225
Query: 233 LNMFP-------QETLSGAPAGG------------LGSLDFLRNN 258
+N+F ++ SG GG SLDFLRNN
Sbjct: 226 MNLFEAAAQAANRDRPSGGQRGGSAPGATGGGALNANSLDFLRNN 270
>gi|320041049|gb|EFW22982.1| UV excision repair protein [Coccidioides posadasii str. Silveira]
gi|392865203|gb|EAS30978.2| UV excision repair protein Rad23 [Coccidioides immitis RS]
Length = 371
Score = 90.9 bits (224), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 65/200 (32%), Positives = 104/200 (52%), Gaps = 15/200 (7%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
MKLT + LK F I +PS+T+ +K+ I +G D QQ LI++GK+L+D T+
Sbjct: 1 MKLTFRDLKQQKFTIEAEPSETIGQLKEKISQEKGWD---AAQQKLIYSGKILQDVNTIE 57
Query: 61 DNKVSEDGFLVVMLSKSKTLGSAGASSAQPAHTTPPTTAPSSNSTPPQEASVPPPAPTPS 120
+ E GF+V M+SK K AQPA +TP + + + ++ P+
Sbjct: 58 SYNIEEKGFIVCMVSKPK---------AQPAPSTPAGPSQTPATPAAPSSTPAAPSAPAP 108
Query: 121 IPASNVTSNVTAANANSDTYGQAASNLVAGNDLEQTIQQIMDMGGGTWDKETVTRALQAA 180
+ T + A + S L+ G E +QQ+ MG + ++ + RA++AA
Sbjct: 109 ATNAPSAPPATPSPATAGATFNDPSALLMGPQSETAVQQMEAMG---FARDDIQRAMRAA 165
Query: 181 YNNPERAVDYLYSGIPETAE 200
+ NP+RA++YL SGIP+ AE
Sbjct: 166 FFNPDRAIEYLLSGIPDHAE 185
>gi|328771201|gb|EGF81241.1| hypothetical protein BATDEDRAFT_16317 [Batrachochytrium
dendrobatidis JAM81]
Length = 377
Score = 90.9 bits (224), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 70/199 (35%), Positives = 103/199 (51%), Gaps = 20/199 (10%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
MKLT KTL+ +F++ V+ + V+ VK+ I +G Y Q LIH+GK+L D +T+
Sbjct: 1 MKLTFKTLQQDNFQVEVEQTAKVIEVKEAILAAKG---YTVASQKLIHSGKILNDASTIE 57
Query: 61 DNKVSEDGFLVVMLSKSK-TLGSAGASSAQPAHTTPPTTAPSSNSTPPQEASVPPPAPTP 119
+ K+SE F+VVM+SK K A + P P T + AS PPA +
Sbjct: 58 ELKISEKDFIVVMVSKPKPVAAPAPVVAPAPVTPAVPVTPTVPVAPTATPASAVPPADSV 117
Query: 120 SIPASNVTSNVTAANANSDTYGQAASNLVAGNDLEQTIQQIMDMGGGTWDKETVTRALQA 179
P + T T A A Y A SNL M+MG + ++ VT A++
Sbjct: 118 DTPVNPETLTTTTALATGAVYENAVSNL-------------MEMG---FPRDQVTHAMRT 161
Query: 180 AYNNPERAVDYLYSGIPET 198
A+NNP+RA +YL +GIP++
Sbjct: 162 AFNNPDRAAEYLMTGIPDS 180
>gi|219112521|ref|XP_002178012.1| RAD23 [Phaeodactylum tricornutum CCAP 1055/1]
gi|217410897|gb|EEC50826.1| RAD23 [Phaeodactylum tricornutum CCAP 1055/1]
Length = 434
Score = 90.9 bits (224), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 71/197 (36%), Positives = 99/197 (50%), Gaps = 30/197 (15%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
MKL VKTLKG FEI + S TV VK IE K G LIH+GKVLKDE ++A
Sbjct: 1 MKLLVKTLKGEKFEIHAEESQTVADVKGIIEAT--KSELSAGTLKLIHSGKVLKDEDSIA 58
Query: 61 DNKVSEDGFLVVMLSKSKTLGSAGASSAQPAHTTPPTTAPSSNSTPPQEASVPPPAPTPS 120
+ E+ FLVVM++K+K +A+PA T PT P++ PP V A +
Sbjct: 59 SAGIKENDFLVVMVTKAKK-----PVAAKPAAT--PTPVPAATPGPP----VAAAASIET 107
Query: 121 IPASNVTSNVTAANANSDTYGQAASNLVAGNDLEQTIQQIMDMGGGTWDKETVTRALQAA 180
+ + A+ D +A +NL + MG + + V L+AA
Sbjct: 108 PAPTAAATPAAPTRAD-DVSAEAVANLTS-------------MG---FPEAEVKHCLRAA 150
Query: 181 YNNPERAVDYLYSGIPE 197
+ NP+ AV++L +GIPE
Sbjct: 151 HGNPDIAVEFLTNGIPE 167
>gi|406866963|gb|EKD20002.1| nucleotide excision repair protein RAD23 [Marssonina brunnea f. sp.
'multigermtubi' MB_m1]
Length = 435
Score = 90.5 bits (223), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 72/201 (35%), Positives = 110/201 (54%), Gaps = 14/201 (6%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
MKLT K LK F I +PS+ + VK+ I +G + QQ LI++GK+L+D T+
Sbjct: 45 MKLTFKDLKQQKFVIEAEPSELISDVKEKITKEKG---WEVSQQKLIYSGKILQDANTVE 101
Query: 61 DNKVSEDGFLVVMLSKSKTLGSAGASSAQPAHTTPPTT---APSSNSTPPQEASVPPPAP 117
K+ E GF+V M++K K A++A A PP+T ++++ P A AP
Sbjct: 102 SYKIEEKGFIVCMITKPK----PAAATASVASKAPPSTPAAPVAASTPAPPPAPAQASAP 157
Query: 118 TPSIPASNVTSNVTAANAN-SDTYGQAASNLVAGNDLEQTIQQIMDMGGGTWDKETVTRA 176
++PA+ + AA A S T G A S L G D I Q+ +MG +++ + A
Sbjct: 158 AQAVPATPSPAGSGAAAAAISSTPGGATSGLSMGTDRAAQIAQMENMG---FERTQIDAA 214
Query: 177 LQAAYNNPERAVDYLYSGIPE 197
++AA+ N ERA++YL +GIPE
Sbjct: 215 MRAAFYNSERAIEYLINGIPE 235
>gi|390602258|gb|EIN11651.1| UV excision repair protein Rad23 [Punctularia strigosozonata
HHB-11173 SS5]
Length = 399
Score = 90.5 bits (223), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 72/203 (35%), Positives = 110/203 (54%), Gaps = 10/203 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
+KLTVKTL+ F I + ++TV +KK I+ QG D Q LI +GKVL DE +
Sbjct: 2 VKLTVKTLQQKVFTIEAEGTETVGDLKKKIQAEQGHD---AATQKLIFSGKVLPDEKVVE 58
Query: 61 DNKVSEDGFLVVMLSKSK---TLGSAGASSAQPAHTTPPTTAPSSNSTPPQEASVPPPAP 117
+ + FLV+M++K K +AG+SS A P+ P A+ P
Sbjct: 59 TLNIKDKDFLVLMVAKPKPTPVTPAAGSSSTPAAVPAAAPAQPAPAPAAPAPAAPAPAPA 118
Query: 118 TPSIPASNVTSNVTAANANSDTYGQAASNLVAGNDLEQTIQQIMDMGGGTWDKETVTRAL 177
PS + + A A +G +S V G+ L+Q+I +++MG +++E V RAL
Sbjct: 119 APSPAPAAEAAAPAAPAAALPAFGDMSS-FVTGDALQQSINGMIEMG---FEREQVMRAL 174
Query: 178 QAAYNNPERAVDYLYSGIPETAE 200
+A++NNP+RAV+YL++GIP E
Sbjct: 175 RASFNNPDRAVEYLFNGIPAHLE 197
>gi|403221228|dbj|BAM39361.1| DNA repair protein [Theileria orientalis strain Shintoku]
Length = 323
Score = 90.5 bits (223), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 81/239 (33%), Positives = 124/239 (51%), Gaps = 27/239 (11%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M L VKTLK E+ V S TV + K +E++ N Q LIH GK+LK E L+
Sbjct: 1 MNLKVKTLKNVEVEVEVAESATVEDLMKRVEELLP--NMQANSQKLIHAGKILKRELLLS 58
Query: 61 DNKVSEDGFLVVMLSKSKTLGSAGASSAQPAHTTPPTTAPSSNSTPPQEASVPPPAPTPS 120
D ++G ++++S KT SA+PA P + S+ +TPP+ T +
Sbjct: 59 DYPDIKEGDKIIVISSKKT------ESAKPAE--PKLDSTSAVATPPK-------VETAT 103
Query: 121 IPASNVTSNVTAANANSDTYGQAASNLVAGNDLEQTIQQIMDMGGGTWDKETVTRALQAA 180
+ N+ T N + +++ +S LV G++L+Q I +I +MG +D+ +V RA+ AA
Sbjct: 104 ENSQNLPRTATP-NVSQESHQSPSSRLVMGSELDQNINRICEMG---FDRASVERAMAAA 159
Query: 181 YNNPERAVDYLYSGIPETAEVAVP-VAHFPASQAAETGAAGAAPVSGVPNSSPLNMFPQ 238
+NNPERAV++L +G + + P + PA QA AG V + S P MF Q
Sbjct: 160 FNNPERAVEFLSTGNIPSVNLENPGTQNTPAEQAEN---AGGEDVFRMLQSHP--MFEQ 213
>gi|19113023|ref|NP_596231.1| UV excision repair protein rhp23 [Schizosaccharomyces pombe 972h-]
gi|21542214|sp|O74803.1|RHP23_SCHPO RecName: Full=UV excision repair protein rhp23; AltName: Full=RAD23
homolog
gi|5805388|gb|AAD51975.1|AF174293_1 Rhp23 [Schizosaccharomyces pombe]
gi|3687502|emb|CAA21170.1| Rad23 homolog Rhp23 [Schizosaccharomyces pombe]
Length = 368
Score = 90.5 bits (223), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 64/204 (31%), Positives = 107/204 (52%), Gaps = 23/204 (11%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M LT K L+ F I +DT ++ K E +Q + NY +Q LI++G++L D+ T+
Sbjct: 1 MNLTFKNLQQQKFVISDVSADTKISELK--EKIQTQQNYEVERQKLIYSGRILADDKTVG 58
Query: 61 DNKVSEDGFLVVMLSKSKTLGSAGASSAQPAHTTPPTTAPSSNSTPPQEASVPPPAPTPS 120
+ + E F+V M+S+ KT + +TP + A + + P AP+ +
Sbjct: 59 EYNIKEQDFIVCMVSRPKT-----------STSTPKSAASPAPNPPASVPEKKVEAPSST 107
Query: 121 IPASNVTSNVTAANA--NSDTYGQA-----ASNLVAGNDLEQTIQQIMDMGGGTWDKETV 173
+ S T+ AA A N DT + A+ L G ++ +++MG +++ V
Sbjct: 108 VAESTSTTQTVAAAAPSNPDTTATSEAPIDANTLAVGAQRNVAVENMVEMG---YERSEV 164
Query: 174 TRALQAAYNNPERAVDYLYSGIPE 197
RA++AA+NNP+RAV+YL +GIPE
Sbjct: 165 ERAMRAAFNNPDRAVEYLLTGIPE 188
>gi|324513075|gb|ADY45389.1| UV excision repair protein RAD23 A [Ascaris suum]
Length = 348
Score = 90.1 bits (222), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 68/206 (33%), Positives = 105/206 (50%), Gaps = 28/206 (13%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
MK+T KT+ F + V PS T+ +K I + +G+ YP Q LI+NGK+L D T+
Sbjct: 1 MKITFKTISQVTFHVEVDPSITIGELKAKIAEQEGQLEYPVDGQKLIYNGKILDDAQTVE 60
Query: 61 DNKVSEDGFLVVMLSKSKTLGSAGASSAQPAHTTPPTTAPSSNSTPPQEASVPPPAPTPS 120
+ K+ F+VVM+++ K A + +TP T A + ASVP
Sbjct: 61 ELKIDAAKFIVVMVARKKAPPPAANAP----ESTPATPAVEEGA-----ASVPS------ 105
Query: 121 IPASNVTSNVTAANANSDTYGQAASNLVAGNDL----EQTIQQIMDMGGGTWDKETVTRA 176
T VTAA + ++ A + L E+T+Q I+ MG + ++ V RA
Sbjct: 106 ------TEAVTAAPTGTAQPAPQQASAAAPDALTPEQEETVQAIVAMG---YPRDRVIRA 156
Query: 177 LQAAYNNPERAVDYLYSGIPETAEVA 202
L+AA+ N +RAV+YL + IP+ E+A
Sbjct: 157 LRAAFFNGDRAVEYLCTEIPDEEELA 182
>gi|260945185|ref|XP_002616890.1| hypothetical protein CLUG_02334 [Clavispora lusitaniae ATCC 42720]
gi|238848744|gb|EEQ38208.1| hypothetical protein CLUG_02334 [Clavispora lusitaniae ATCC 42720]
Length = 340
Score = 90.1 bits (222), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 70/197 (35%), Positives = 109/197 (55%), Gaps = 25/197 (12%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++T K LK ++ V+PSD V K+ + +D P Q +++GKVL+D+ T
Sbjct: 1 MQVTFKDLKKQTVQVSVEPSDLVRVGKEKV--AAARDVDP-SQLKFVYSGKVLQDDKTFD 57
Query: 61 DNKVSEDGFLVVMLSKSKTLGSAGASSAQPAHTTPPTTAPSSNSTPPQEASVPPPAPTPS 120
+ KV E ++ M+S+ K+ A A A PA + +APS T Q TP
Sbjct: 58 EFKVKEGDSIIFMISQKKSPAPAPAPVAAPAASEA-VSAPSEPETSTQ---------TPE 107
Query: 121 IPASNVTSNVTAANANSDTYGQAASNLVAGNDLEQTIQQIMDMGGGTWDKETVTRALQAA 180
T++ TAANA++ ++S+ +G D E IQ +M+MG +++ + RAL+AA
Sbjct: 108 ------TASSTAANASTPA---SSSDFASGQDREAAIQNMMEMG---YERPQIERALRAA 155
Query: 181 YNNPERAVDYLYSGIPE 197
+NNP RAV+YL +GIPE
Sbjct: 156 FNNPHRAVEYLITGIPE 172
>gi|402588417|gb|EJW82350.1| UV excision repair protein Rad23 [Wuchereria bancrofti]
Length = 190
Score = 90.1 bits (222), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 66/201 (32%), Positives = 103/201 (51%), Gaps = 30/201 (14%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M +T KT+ FEI + P T+ VK I + +G+ YP Q LI+NGKVL D T+
Sbjct: 1 MLVTFKTIAQVSFEIELDPHLTIGEVKAKIAEEKGEVEYPTECQKLIYNGKVLDDAQTVE 60
Query: 61 DNKVSEDGFLVVMLSKSKTLGSAGASSAQPAHTTPPTTAPSSNSTPPQEASVPPPAPTPS 120
+ + F+VVM+++ K +G+ S+ QP++ P A +A+ P + S
Sbjct: 61 EVMIDPSKFVVVMIARKKPIGAPVESTPQPSNLQIPAGA---------QATTAPVSVADS 111
Query: 121 IPASNVTSNVTAANANSDTYGQAASNLVAGNDLEQTIQQIMDMGGGTWDKETVTRALQAA 180
P+ T N + T Q E+T Q I+ MG + ++ V RAL+A+
Sbjct: 112 GPS-------TPQNPDGLTSEQ-----------EETAQAIVAMG---YPRDKVIRALRAS 150
Query: 181 YNNPERAVDYLYSGIPETAEV 201
+ N +RAV+YL SGIPE ++
Sbjct: 151 FFNGDRAVEYLCSGIPEEEDL 171
>gi|312095801|ref|XP_003148472.1| UV excision repair protein Rad23 containing protein [Loa loa]
Length = 341
Score = 90.1 bits (222), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 69/212 (32%), Positives = 105/212 (49%), Gaps = 36/212 (16%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVM-----------AVKKNIEDVQGKDNYPCGQQLLIHN 49
M +T KT+ FEI + P TV VK I + +G+ YP Q LI+N
Sbjct: 1 MLITFKTIAQVSFEIELDPHLTVYFWSNVVLPKIGEVKAKIAEEKGEVEYPIECQKLIYN 60
Query: 50 GKVLKDETTLADNKVSEDGFLVVMLSKSKTLGSAGASSAQPAHTTPPTTAPSSNSTPPQE 109
GKVL D T+ + + F+V+M+++ K +G A PA +TP P
Sbjct: 61 GKVLDDAQTVEEVMIDPSKFVVIMIARKKPVG------ATPAESTP----------QPSN 104
Query: 110 ASVPPPAPTPSIPASNVTSNVTAANANSDTYGQAASNLVAGNDLEQTIQQIMDMGGGTWD 169
+P A ++ ++VT N AA NS + L + E+T Q I+ MG +
Sbjct: 105 LQIPAAAQVTTVTPASVTDNSPAAPQNSGI----SDGLTP--EQEETAQAIVAMG---YS 155
Query: 170 KETVTRALQAAYNNPERAVDYLYSGIPETAEV 201
++ V RAL+A++ N +RAV+YL SGIPE ++
Sbjct: 156 RDKVIRALRASFFNGDRAVEYLCSGIPEEEDL 187
>gi|322698416|gb|EFY90186.1| UV excision repair protein (RadW), putative [Metarhizium acridum
CQMa 102]
Length = 400
Score = 90.1 bits (222), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 68/213 (31%), Positives = 110/213 (51%), Gaps = 22/213 (10%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
MK+T + LK F + V+P+ + AVK+ I +G D Q LI++GK+LKD+ T+A
Sbjct: 1 MKVTFRDLKQQKFVLEVEPTYLISAVKEKISAEKGWDP---KHQKLIYSGKILKDDETVA 57
Query: 61 DNKVSEDGFLVVMLSKS--------KTLGSAGASSAQPAHTTPPTTAPSSNSTPPQEASV 112
+ E GF+V M++K+ + G + P TA SS + P
Sbjct: 58 SYNIEEKGFVVCMVNKACLFSSQLRRCFNQTGRLTYLQPKEKPAPTAESSAAAAPPATPA 117
Query: 113 PPPAPTPSIPASNVTSNVTAANA--------NSDTYGQAASNLVAGNDLEQTIQQIMDMG 164
P A TP++PA+ S+ T + A + + G+ S L G + + I + MG
Sbjct: 118 QPVASTPAVPAAPAQSSTTQSAAPATPTPQRSGEAGGETGSGLAMGAERAEAITNMEAMG 177
Query: 165 GGTWDKETVTRALQAAYNNPERAVDYLYSGIPE 197
+++ + A++AA+NNP+RAV+YL +GIPE
Sbjct: 178 ---FERSQIEAAMRAAFNNPDRAVEYLLNGIPE 207
>gi|70998612|ref|XP_754028.1| UV excision repair protein (RadW) [Aspergillus fumigatus Af293]
gi|66851664|gb|EAL91990.1| UV excision repair protein (RadW), putative [Aspergillus fumigatus
Af293]
gi|159126238|gb|EDP51354.1| UV excision repair protein (RadW), putative [Aspergillus fumigatus
A1163]
Length = 376
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 86/273 (31%), Positives = 130/273 (47%), Gaps = 24/273 (8%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
MKLT K LK F I +PS+TV VK+ I +G + Q LI++GK+L+D+ T+
Sbjct: 1 MKLTFKDLKQQKFVIEAEPSETVGQVKEKISKEKG---WEVPQLKLIYSGKILQDDKTIE 57
Query: 61 DNKVSEDGFLVVMLSKSKTLGSAGASSAQPAHTTPPTTAPSSNSTPPQEASVPPPAPTPS 120
+ E GF+V M+SK K SA S P +TP A S+ + P A P+
Sbjct: 58 TYNIEEKGFIVCMVSKPKAPSSAATPSQAP--STPSRAAASTPAAPSAPAPSAAPSAPAV 115
Query: 121 IPASNVTSNVTAANANSDTYGQAASNLVAGNDLEQTIQQIMDMGGGTWDKETVTRALQAA 180
+ + A S + S L++G+ E I Q+ MG + + + RA++AA
Sbjct: 116 PATPSPAAPAPAPTDASAAFND-PSALLSGSQSEAVISQMESMG---FPRSDINRAMRAA 171
Query: 181 YNNPERAVDYLYSGIPETAEVAVPVAHFPASQAAETGA-AGAAPVSGVPNSSPLNMFPQE 239
+ NP+RA++YL +GIP+ + A+ A A +G + S P+N+F
Sbjct: 172 FFNPDRAIEYLLNGIPDNIQQEQQQQAAAAAAAPRPSAPSGESAPSSTGGDEPVNLFEAA 231
Query: 240 TLSGAPAG--------------GLGSLDFLRNN 258
+G G GL +LDFLRNN
Sbjct: 232 AQAGTGEGTGRGARAGAVGAGEGLPNLDFLRNN 264
>gi|83764932|dbj|BAE55076.1| unnamed protein product [Aspergillus oryzae RIB40]
Length = 403
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 89/281 (31%), Positives = 132/281 (46%), Gaps = 38/281 (13%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
+ VK LK F I +PS+TV VK+ I +G + Q LI++GK+L+D+ +
Sbjct: 26 FNVAVKDLKQQKFVIDAEPSETVGQVKEKISKEKG---WEVPQLKLIYSGKILQDDKAIE 82
Query: 61 DNKVSEDGFLVVMLSKSKTLGSAGASSAQPAHTTPPTTAPSSNSTPPQEASVPPPAPTPS 120
+ E GF+V M+SK K A +S+A P+ P+T + ++ P P P+ S
Sbjct: 83 SYNIEEKGFIVCMVSKPK----ASSSTATPSQA--PSTPSRAATSTPAAPPAPAPSTNAS 136
Query: 121 IPASNVTSNVTAANANSDTYGQAASNLVAGNDLEQTIQQIMDMGGGTWDKETVTRALQAA 180
A T + AA SD S L++G+ E I + MG + ++ + RA++AA
Sbjct: 137 ATAPPATPSPAAATQPSDAAFNDPSALLSGSQGEAVISHMESMG---FPRDDINRAMRAA 193
Query: 181 YNNPERAVDYLYSGIPETAEVAVPVAHF-----------PASQAAETGAAGAAPVSGVPN 229
+ NP RA++YL +GIPE + P AA G A G
Sbjct: 194 FFNPTRAIEYLLNGIPENIQQEQEQQQQQQQAATATAASPQPPAASAGGNAPATTGG--- 250
Query: 230 SSPLNMF-----------PQETLSGAPAG-GLGSLDFLRNN 258
P+N+F P SG+ AG GL +LDFLRNN
Sbjct: 251 EEPVNLFEAAAQAGTQEGPHGARSGSAAGEGLPNLDFLRNN 291
>gi|291407417|ref|XP_002719904.1| PREDICTED: UV excision repair protein RAD23 homolog B-like
[Oryctolagus cuniculus]
Length = 488
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 88/301 (29%), Positives = 134/301 (44%), Gaps = 76/301 (25%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M+LT++ F I + P TV A+K+ IE QG+D +P Q L++ G+VL D+ L
Sbjct: 1 MRLTLEAGPQLTFHIDIDPGQTVRALKEKIEAEQGRDAFPVAGQQLLYAGRVLPDDAVLR 60
Query: 61 DNKVSEDGFLVVMLSKSKTLGSAGASS----------------------------AQPAH 92
D ++ E + V++++ + +A ++ A PA
Sbjct: 61 DCQIHEHHAVTVLVARPEAATTAAPATATATAGQSHPATAASAGAGAPARGPALPAAPAT 120
Query: 93 TTPPTTAPSSNSTPPQEASVP----------PPAPTPSIPASNVTSNVTAANANSDTYGQ 142
+T T AP+S++ SVP PP P+P+ P + + A + Q
Sbjct: 121 STRATPAPASSTC---AMSVPATSTRATPRLPPCPSPT-PDDAIAGPSSRAQPSE----Q 172
Query: 143 AASNLVAGNDLEQTIQQIMDMGGGTWDKETVTRALQAAYNNPERAVDYLYSGIP----ET 198
AA L+ EQ + +I+ MG +++E V AL+A++NNP RAV+YL G+P
Sbjct: 173 AARALLTRPASEQMVAEIVSMG---YEREQVLAALRASFNNPHRAVEYLLMGLPGDRASA 229
Query: 199 AEVAVPVAHFPASQAAETGAAGAAPVSGVPNSSPLNMFPQETLSGAPAGGLGS--LDFLR 256
AEV P A G++GA S V E GA G G LD LR
Sbjct: 230 AEVEPPQA----------GSSGAGRSSAV-----------EADEGAATSGSGGHPLDVLR 268
Query: 257 N 257
N
Sbjct: 269 N 269
>gi|242793918|ref|XP_002482264.1| UV excision repair protein (RadW), putative [Talaromyces stipitatus
ATCC 10500]
gi|218718852|gb|EED18272.1| UV excision repair protein (RadW), putative [Talaromyces stipitatus
ATCC 10500]
Length = 375
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 68/197 (34%), Positives = 101/197 (51%), Gaps = 12/197 (6%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
MKLT + LK F I +P++TV VK+ I +G + QQ LI++GK+L+D T+
Sbjct: 1 MKLTFRDLKQQKFTIEAEPTETVGQVKEKIAREKG---WEASQQKLIYSGKILQDANTIE 57
Query: 61 DNKVSEDGFLVVMLSKSKTLGSAGASSAQPAHTTPPTTAPSSNSTPPQEASVPPPAPTPS 120
+ E GF+V M+SK K ++ A+ A P+ + S A P PTP+
Sbjct: 58 SYNIEEKGFIVCMVSKPKPAAGGPSTPAKAAPPATPSAPAQAPSASTAAAPQVPSTPTPA 117
Query: 121 IPASNVTSNVTAANANSDTYGQAASNLVAGNDLEQTIQQIMDMGGGTWDKETVTRALQAA 180
+ + AA N S L G+ E I Q+ MG + + + RA++AA
Sbjct: 118 SSGATTAATGEAAAFND------PSALAMGSQGEAVISQMEAMG---FPRADIDRAMRAA 168
Query: 181 YNNPERAVDYLYSGIPE 197
+ NP+RAVDYL +GIPE
Sbjct: 169 FFNPDRAVDYLLNGIPE 185
>gi|145503696|ref|XP_001437822.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124404979|emb|CAK70425.1| unnamed protein product [Paramecium tetraurelia]
Length = 324
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 59/196 (30%), Positives = 91/196 (46%), Gaps = 33/196 (16%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
MK+ +KTL G FE+ VQP+D+V+ +K+ IE V+ + QQ L+ G +L D+ T+
Sbjct: 1 MKIIIKTLSGQTFELEVQPTDSVLNIKEKIEKVK---QFEIAQQKLLRKGTLLVDDQTVG 57
Query: 61 DNKVSEDGFLVVMLSKSKTLGSAGASSAQPAHTTPPTTAPSSNSTPPQEASVPPPAPTPS 120
D + E FLVVM++ K P Q VP P P+
Sbjct: 58 DLGIQEKDFLVVMVNVKK----GPPQQQPVQQQAQQPPQQPQPVQPQQPIEVPKPLNNPT 113
Query: 121 IPASNVTSNVTAANANSDTYGQAASNLVAGNDLEQTIQQIMDMGGGTWDKETVTRALQAA 180
SN+V G++ +Q IQ ++ MG + K A++AA
Sbjct: 114 -----------------------TSNMVTGSEYDQAIQNLIQMG---FAKSECEAAMKAA 147
Query: 181 YNNPERAVDYLYSGIP 196
+NN RA++YL +G+P
Sbjct: 148 FNNQNRAIEYLLNGLP 163
>gi|189195060|ref|XP_001933868.1| DNA repair protein RAD23-like protein [Pyrenophora tritici-repentis
Pt-1C-BFP]
gi|187979747|gb|EDU46373.1| DNA repair protein RAD23-like protein [Pyrenophora tritici-repentis
Pt-1C-BFP]
Length = 382
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 91/285 (31%), Positives = 127/285 (44%), Gaps = 44/285 (15%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
MK+T K LK + F I +PS+T+ A+K I Q + + QQ LI++GK+L+D T+
Sbjct: 1 MKITFKDLKQNKFVIEAEPSETIGALKAKI---QAEKGWEVPQQKLIYSGKILQDANTVE 57
Query: 61 DNKVSEDGFLVVMLSKSKTLGSAGASSAQPAHTTPPTTAPSSNSTPPQEASVPPPAPTPS 120
+ E GF+V M+SK K A +SS T P A Q + P S
Sbjct: 58 SYNIEEKGFIVCMVSKPKAAAGAASSSKAAPSTPAPVAA--------QTPAAPSAPAPSS 109
Query: 121 IPASNVTSNVTAANANSDTYGQAASNLVAGNDLEQTIQQIMDMGGGTWDKETVTRALQAA 180
P + + A S S L G + E I + MG D + RA++AA
Sbjct: 110 NPQNAPATPSPAPAQASGERFNDPSALTMGGEREAAIANMESMGFARAD---IDRAMRAA 166
Query: 181 YNNPERAVDYLYSGIPET--------AEVAVPVAHFPASQAAETGAAGAAPVSGVPNSSP 232
+ NP+RAV+YL +GIPE+ A+ P + PA T AP SG P
Sbjct: 167 FFNPDRAVEYLLTGIPESALQEQAQQAQARAPTSPTPAGNTGATATPANAP-SGA--DEP 223
Query: 233 LNMFP-------QETLSGAPAGG------------LGSLDFLRNN 258
+N+F ++ SG GG SLDFLRNN
Sbjct: 224 MNLFEAAAQAANRDRPSGGQRGGSAPGATGGAALNANSLDFLRNN 268
>gi|358333357|dbj|GAA51877.1| UV excision repair protein RAD23 [Clonorchis sinensis]
Length = 504
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 66/184 (35%), Positives = 100/184 (54%), Gaps = 30/184 (16%)
Query: 16 RVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVM-L 74
R Q SD VKK IE +G + + Q LIH+GKV++DE TL KV++ GF+VVM +
Sbjct: 134 RAQVSD----VKKKIEAEKG-NEFSASSQTLIHSGKVMEDEKTLKQYKVTDKGFIVVMAV 188
Query: 75 SKSKTLGSAGA----SSAQPAHTTPPTTAPSSNSTPPQEASVPPPAPTPSIPASNVTSNV 130
SK +A +A+P + + P++ QE +VP S+V
Sbjct: 189 SKPSKEPTASVEKLPEAAKPVQSE--QSIPANTVASVQETTVP-------------RSDV 233
Query: 131 TAANANSDTYGQAASNLVAGNDLEQTIQQIMDMGGGTWDKETVTRALQAAYNNPERAVDY 190
AA G++A LV G + E+ I +I+ MG +++ V RA++A++NNP+RAV+Y
Sbjct: 234 PAAAGPESATGESA--LVTGAEYERAISEIVGMG---FERSMVIRAMRASFNNPDRAVEY 288
Query: 191 LYSG 194
L SG
Sbjct: 289 LLSG 292
>gi|121712652|ref|XP_001273937.1| UV excision repair protein (RadW), putative [Aspergillus clavatus
NRRL 1]
gi|119402090|gb|EAW12511.1| UV excision repair protein (RadW), putative [Aspergillus clavatus
NRRL 1]
Length = 383
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 67/198 (33%), Positives = 107/198 (54%), Gaps = 9/198 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
MKLT K LK F I +PS+TV VK+ I +G + Q LI++GK+L+D+ T+
Sbjct: 1 MKLTFKDLKQQKFVIDAEPSETVGQVKEKISKEKG---WEVSQLKLIYSGKILQDDKTIE 57
Query: 61 DNKVSEDGFLVVMLSKSKTLGSAGASSAQPAHTTPPTTAPSSNSTPPQEASVPPPAPTPS 120
+ E GF+V M+SK K +A S P + P+ A +S P + TP+
Sbjct: 58 TYNIEEKGFIVCMVSKPKATSAAATPSQAP---STPSRAVASTPAAPPAPAPSAATSTPA 114
Query: 121 IPASNVTSNVTAANANSDTYGQAASNLVAGNDLEQTIQQIMDMGGGTWDKETVTRALQAA 180
+PA+ + +A++ S L++G E + Q+ MG + + + RA++AA
Sbjct: 115 VPATPSPAAPAQPSADTPVAFNDPSALLSGAQSEAVVAQMESMG---FPRSDINRAMRAA 171
Query: 181 YNNPERAVDYLYSGIPET 198
+ NP+RA++YL +GIPET
Sbjct: 172 FFNPDRAIEYLLNGIPET 189
>gi|170590706|ref|XP_001900112.1| UV excision repair protein Rad23 containing protein [Brugia malayi]
gi|158592262|gb|EDP30862.1| UV excision repair protein Rad23 containing protein [Brugia malayi]
Length = 354
Score = 88.6 bits (218), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 68/206 (33%), Positives = 102/206 (49%), Gaps = 40/206 (19%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M +T KT+ FEI + P T+ VK I + +G+ YP Q LI+NGKVL D T+
Sbjct: 23 MLVTFKTIAQVSFEIELDPHLTIGEVKAKIAEEKGEVEYPTECQKLIYNGKVLDDAQTVE 82
Query: 61 DNKVSEDGFLVVMLSKSKTLGSAGASSAQPAHTTPP-----TTAPSSNSTPPQEASVPPP 115
+ + F+VVM+++ K +G+ S+ QP++ P TTAP SV
Sbjct: 83 EVMIDPSKFVVVMIARKKPIGAPVESTPQPSNLQIPAGAQVTTAP---------VSVADS 133
Query: 116 APTPSIPASNVTSNVTAANANSDTYGQAASNLVAGNDLEQTIQQIMDMGGGTWDKETVTR 175
P+ T N + T Q E+T Q I+ MG + ++ V R
Sbjct: 134 GPS------------TPQNPDDLTPEQ-----------EETAQAIVAMG---YPRDKVIR 167
Query: 176 ALQAAYNNPERAVDYLYSGIPETAEV 201
AL+A++ N +RAV+YL SGIPE ++
Sbjct: 168 ALRASFFNGDRAVEYLCSGIPEEEDL 193
>gi|187117168|ref|NP_001119685.1| rad23 protein [Acyrthosiphon pisum]
gi|89473754|gb|ABD72689.1| putative RAD23-like B [Acyrthosiphon pisum]
gi|239788640|dbj|BAH70991.1| ACYPI000077 [Acyrthosiphon pisum]
Length = 347
Score = 88.6 bits (218), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 65/199 (32%), Positives = 111/199 (55%), Gaps = 12/199 (6%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M +T K L+ F++ + TV +K+ ++ +G + Y Q LI+ GK+L D+T ++
Sbjct: 1 MLITFKNLQQHTFKLEIDSDQTVRQLKEKLQAEKGSE-YLAENQKLIYAGKILSDDTKIS 59
Query: 61 DNKVSEDGFLVVMLSKSKTLGSAGASSAQPAHTTPPTTAPSSNSTPPQEASVPPPAPTPS 120
D + F+VVM+SK+ G+ A+SA + T+ S + P ++ PA S
Sbjct: 60 DCNIDSKKFVVVMVSKAT--GAVTATSATNTASAASATSVSDTKSTPSVSTPMIPADNSS 117
Query: 121 IPAS--NVTSNVTAANANSDTYGQAASNLVAGNDLEQTIQQIMDMGGGTWDKETVTRALQ 178
IP + V + + + ++ASN ++ E+TIQ IMDMG +++ V AL+
Sbjct: 118 IPIAQPRVVEQLPSPVETRASEPESASN----DETERTIQNIMDMG---YERPQVEEALR 170
Query: 179 AAYNNPERAVDYLYSGIPE 197
A++NNP+RAV+YL +GIP+
Sbjct: 171 ASFNNPDRAVEYLLTGIPQ 189
>gi|356498318|ref|XP_003518000.1| PREDICTED: uncharacterized protein LOC100787330 [Glycine max]
Length = 159
Score = 88.2 bits (217), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 46/82 (56%), Positives = 57/82 (69%), Gaps = 1/82 (1%)
Query: 7 TLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSE 66
TLKG+HF ++V P DTV VK NIE QG D YP Q++LIH GKVLKD TTL +NKV E
Sbjct: 51 TLKGTHFVVQVNPRDTVADVK-NIEIAQGVDVYPGAQRMLIHQGKVLKDATTLEENKVVE 109
Query: 67 DGFLVVMLSKSKTLGSAGASSA 88
D +V+MLSK + ++G A
Sbjct: 110 DNSVVIMLSKIIYMDTSGTEIA 131
>gi|145538419|ref|XP_001454915.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124422692|emb|CAK87518.1| unnamed protein product [Paramecium tetraurelia]
Length = 331
Score = 88.2 bits (217), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 64/195 (32%), Positives = 96/195 (49%), Gaps = 33/195 (16%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
MK+ +KTL G F+I VQP++TV+ +K+ IE Q K + QQ L+ G +L++E T+A
Sbjct: 1 MKIIIKTLSGQTFDIEVQPTETVLNIKEKIE--QNKQ-FEIAQQKLLRKGTLLQNEQTVA 57
Query: 61 DNKVSEDGFLVVMLSKSKTLGSAGASSAQPAHTTPPTTAPSSNSTPPQEASVPPPAPTPS 120
+ + E FLVVM++ K G Q PP P +A P AP P
Sbjct: 58 ELGLQEKDFLVVMVNVKK--GPPQQQPVQQQVQQPPQQPQPVQPQQPIQAFKPVVAPAP- 114
Query: 121 IPASNVTSNVTAANANSDTYGQAASNLVAGNDLEQTIQQIMDMGGGTWDKETVTRALQAA 180
N+V G++ + IQ ++ MG + K A++AA
Sbjct: 115 ------------------------QNMVTGSEYDAAIQNLIQMG---FAKSECEAAMKAA 147
Query: 181 YNNPERAVDYLYSGI 195
YNNP+RA++YL +GI
Sbjct: 148 YNNPDRAIEYLLNGI 162
>gi|302916881|ref|XP_003052251.1| hypothetical protein NECHADRAFT_60284 [Nectria haematococca mpVI
77-13-4]
gi|256733190|gb|EEU46538.1| hypothetical protein NECHADRAFT_60284 [Nectria haematococca mpVI
77-13-4]
Length = 389
Score = 87.8 bits (216), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 67/197 (34%), Positives = 106/197 (53%), Gaps = 10/197 (5%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
MK+T K LK F + V+P++ + AVK+ I +G D P Q+L I++GK+LKDE T+A
Sbjct: 1 MKVTFKDLKQQKFTLDVEPTELISAVKEKISAEKGWD--PKLQKL-IYSGKILKDEETVA 57
Query: 61 DNKVSEDGFLVVMLSKSKTLGSAGASSAQPAHTTPPTTAPSSNSTPPQEASVPPPAPTPS 120
+ E GF+V M++K K +A A+ + TP P +N+ A V + +
Sbjct: 58 SYNIEEKGFVVCMVNKPKPKPAAPAAESSAPPATP--AQPIANTPAAPAAPVQSTSHQAA 115
Query: 121 IPASNVTSNVTAANANSDTYGQAASNLVAGNDLEQTIQQIMDMGGGTWDKETVTRALQAA 180
+PA+ + A S S L G + I + MG +++ + A++AA
Sbjct: 116 VPATPTPQR--SVEAGSGAPSNEPSGLAMGAQRAEAIANMEAMG---FERSQIEAAMRAA 170
Query: 181 YNNPERAVDYLYSGIPE 197
+NNP+RAV+YL +GIPE
Sbjct: 171 FNNPDRAVEYLLTGIPE 187
>gi|452985526|gb|EME85282.1| hypothetical protein MYCFIDRAFT_119289, partial [Pseudocercospora
fijiensis CIRAD86]
Length = 390
Score = 87.8 bits (216), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 70/205 (34%), Positives = 107/205 (52%), Gaps = 25/205 (12%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
MKLT K LK + F++ +P+DT+ +VK+ I +G + Q LI++GK+L+D+ T+
Sbjct: 1 MKLTFKDLKQAKFQVEAEPTDTIGSVKEKISKEKG---WEPSTQKLIYSGKILQDDNTIE 57
Query: 61 DNKVSEDGFLVVMLSKSKTLGSAGASSAQPAHTTPPTTAPS------SNSTPPQEASVPP 114
K+ E GF+V M SK K S A A PA + T AP + S Q + P
Sbjct: 58 SYKIEEKGFIVCMTSKPKAPPSKPADPATPAKSVASTPAPPAAPAQFATSAASQAPATPS 117
Query: 115 PAPTPSIPASNVTSNVTAANANSDTYGQAASNLVAGNDLEQTIQQIMDMGGGTWDKETVT 174
PAP + T N +A A + A +N+ A MG + ++ +
Sbjct: 118 PAPASTASGDVATFNDPSALAMGEQRAAAIANMEA-------------MG---FPRDQID 161
Query: 175 RALQAAYNNPERAVDYLYSGIPETA 199
A++AA+ NP+RAV+YL +GIPE+A
Sbjct: 162 AAMRAAFFNPDRAVEYLLNGIPESA 186
>gi|67523697|ref|XP_659908.1| hypothetical protein AN2304.2 [Aspergillus nidulans FGSC A4]
gi|40745259|gb|EAA64415.1| hypothetical protein AN2304.2 [Aspergillus nidulans FGSC A4]
Length = 378
Score = 87.4 bits (215), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 73/212 (34%), Positives = 117/212 (55%), Gaps = 31/212 (14%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
MKLT + LK F I +PS+TV VK+ I +G D P + LI++GK+L+D+ T+
Sbjct: 1 MKLTFRDLKQQKFVIDAEPSETVGQVKEKISTEKGWD-VPSLK--LIYSGKILQDDKTVE 57
Query: 61 DNKVSEDGFLVVMLSKSKTLGSAGASSAQPAHTTPPTTAPSSNSTPPQEASVPPPAPTPS 120
+ E GF+V M+SK KT QP+ +P T A S STP + P T +
Sbjct: 58 FYNIEEKGFIVCMVSKPKT---------QPSSQSPSTPAKSVTSTPAPPPAPAPSTNTST 108
Query: 121 ------IPASNVTSNVTAANANSDTYGQAASNLVAGNDLEQTIQQIMDMGGGTWDKETVT 174
+PA+ ++ AA +++ T+ ++ L+ G+ E+ I Q+M MG +++E +
Sbjct: 109 TATSGPVPATPSPASSGAAQSSASTFNDPSA-LLTGSQSEEVINQMMSMG---FEREQIN 164
Query: 175 RALQAAYNNPERAVDYLYS---------GIPE 197
RA++AA+ NP+RA++YL + GIPE
Sbjct: 165 RAMRAAFFNPDRAIEYLLNLLISAFAIKGIPE 196
>gi|400602559|gb|EJP70161.1| UV excision repair protein Rad23 [Beauveria bassiana ARSEF 2860]
Length = 397
Score = 87.4 bits (215), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 71/217 (32%), Positives = 109/217 (50%), Gaps = 31/217 (14%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHN----------- 49
MK+T + LK F + V+P+D + AVK+ I +G D P Q+L+
Sbjct: 1 MKVTFRDLKQQKFTLEVEPTDLISAVKERISTEKGWD--PKHQKLIYSGADEQNPAPTAP 58
Query: 50 -------GKVLKDETTLADNKVSEDGFLVVMLSKSKTLGSAGASSAQPAHTTPPTTAPSS 102
GK+LKDE T+A + E GF+V M++K K +A SA TP A +
Sbjct: 59 PFLTNFLGKILKDEETVASYNIEEKGFVVCMVNKPKEKPAAATPSAAAPPATPAQPAQGT 118
Query: 103 NSTP--PQEASVPPPAPTPSIPASNVTSNVTAANANSDTYGQAASNLVAGNDLEQTIQQI 160
+ P P ++S A P+ P N +++ TA A D+ G L G + I +
Sbjct: 119 PAAPAAPNQSSASLTANIPATPTPNRSTDATAP-AGGDSAG-----LTMGTERAAAITSM 172
Query: 161 MDMGGGTWDKETVTRALQAAYNNPERAVDYLYSGIPE 197
MG +++ + A++AA+NNP+RAV+YL +GIPE
Sbjct: 173 EAMG---FERSQIEAAMRAAFNNPDRAVEYLLTGIPE 206
>gi|358387006|gb|EHK24601.1| hypothetical protein TRIVIDRAFT_84601 [Trichoderma virens Gv29-8]
Length = 361
Score = 87.4 bits (215), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 71/202 (35%), Positives = 110/202 (54%), Gaps = 29/202 (14%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
MK+T + LK F + V+P+D + AVK+ I +G D P Q+L I++GK+LKD+ T+
Sbjct: 1 MKVTFRDLKQQKFVLDVEPTDKISAVKEKISAEKGWD--PKSQKL-IYSGKILKDDDTVQ 57
Query: 61 DNKVSEDGFLVVMLSKSKTLGSAGASSAQPAHTTPPTTAPSSNSTPPQEASVPPPAP--- 117
+ E GF+V M++K K + A++ PA PP STP V PPAP
Sbjct: 58 SYNIEEKGFVVCMVNKPKPAAAPAAAAPPPATPAPPVA-----STP-----VVPPAPVQT 107
Query: 118 -TPSIPASNVTSNVTAANANSDTYGQAASNLVAGNDLEQTIQQIMDMGGGTWDKETVTRA 176
T + P + T N +A S L G++ + I + MG +++ + A
Sbjct: 108 STQAAPPATPTPNRSAG---------TPSGLAMGSERAEAIANMEAMG---FERTQIEAA 155
Query: 177 LQAAYNNPERAVDYLYSGIPET 198
++AA+NNP+RAV+YL +GIPE+
Sbjct: 156 MRAAFNNPDRAVEYLLTGIPES 177
>gi|358398611|gb|EHK47962.1| hypothetical protein TRIATDRAFT_298203 [Trichoderma atroviride IMI
206040]
Length = 367
Score = 87.4 bits (215), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 62/197 (31%), Positives = 103/197 (52%), Gaps = 15/197 (7%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
MK+T + LK F + V+P+D + AVK+ I +G + Q LI++GK+LKD+ T+
Sbjct: 1 MKVTFRDLKQQKFVLDVEPTDQISAVKEKIAAEKG---WEPKTQKLIYSGKILKDDDTVQ 57
Query: 61 DNKVSEDGFLVVMLSKSKTLGSAGASSAQPAHTTPPTTAPSSNSTPPQEASVPPPAPTPS 120
+ E GF+V M++K + +A ++A TP PS+ + P P P+ T S
Sbjct: 58 SYNIEEKGFVVCMVNKPRPAAAAAPAAAAAPPATPAQRVPSTPAVP------PAPSQTSS 111
Query: 121 IPASNVTSNVTAANANSDTYGQAASNLVAGNDLEQTIQQIMDMGGGTWDKETVTRALQAA 180
N + ++ S L G + + I + MG +++ + A++AA
Sbjct: 112 ---QAPPPATPTPNRSVESPSGGVSGLAMGAERAEAIANMEAMG---FERTQIEAAMRAA 165
Query: 181 YNNPERAVDYLYSGIPE 197
+NNP+RAV+YL +GIPE
Sbjct: 166 FNNPDRAVEYLLTGIPE 182
>gi|343428884|emb|CBQ72429.1| related to RAD23-nucleotide excision repair protein (ubiquitin-like
protein) [Sporisorium reilianum SRZ2]
Length = 434
Score = 87.4 bits (215), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 76/245 (31%), Positives = 122/245 (49%), Gaps = 45/245 (18%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
MKL +K+L G +F + + +DT+ ++K I+ QG + Q +I +GK+L D+ T+A
Sbjct: 1 MKLLIKSLAGGNFHLDAELTDTIGSIKAKIQKEQG---HAPELQKIIFSGKILTDDKTVA 57
Query: 61 DNKVSEDGFLVVML------------------------SKSKTLGSAGASSAQPAHTTPP 96
D + E FLVVM+ + + +A A+ A T P
Sbjct: 58 DCNIKEKDFLVVMVSKPKAPKPAAAPAAAAASTSTPAAASAADKPAAAAAPAATPKTDAP 117
Query: 97 TTAPSSNSTPPQEASVPPPAPTPSIPASNVTSNVTAANANSDTYGQAASNLVAGNDLEQT 156
++ + +AS APT S PA+ S + + + + G LE
Sbjct: 118 AAEAAAAAPSTTDASSTTAAPTESTPAAT----------ESQSSSGTSGSFLTGGALESA 167
Query: 157 IQQIMDMGGGTWDKETVTRALQAAYNNPERAVDYLYSGIPETAEVAVPVAHFPASQAAET 216
+Q +M+MG ++++ V RA++AA+NNP+RAV+YL +GIPE +A P A A Q + T
Sbjct: 168 MQSMMEMG---FERDQVQRAMRAAFNNPDRAVEYLMTGIPE--HLANPPA---APQPSST 219
Query: 217 GAAGA 221
GAA A
Sbjct: 220 GAASA 224
>gi|297286975|ref|XP_001085658.2| PREDICTED: UV excision repair protein RAD23 homolog B [Macaca
mulatta]
Length = 406
Score = 87.0 bits (214), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 75/256 (29%), Positives = 115/256 (44%), Gaps = 46/256 (17%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++T+KTL+ F+I + P +TV A+K+ IE + K+ P Q LI+ G++L D+ L
Sbjct: 1 MQVTLKTLQPQSFKIDIDPEETVKALKEKIESEKAKEASPVAGQKLIYAGEILNDDAALK 60
Query: 61 DNKVSEDGFLV--VMLSKSKTLGS---------------------------------AGA 85
+ K+ E F+V VM++K K + + A A
Sbjct: 61 EYKIDEKIFVVVMVMVTKPKAVSTPAPATTQQSAPASTTAVTSSTATTVAQAPTPVLALA 120
Query: 86 SSAQPAHTTPPTTAPSSNSTP----PQEASVPPPAPTPSIPASNVTSNVTAANANSDTYG 141
++ PA TP + SS P Q+ + PA TP T ++ S+ +
Sbjct: 121 TTFTPAFITPVSVTVSSEPAPASATKQKKAAEKPAETPVATRLTSTDCTLXDSSWSNLFE 180
Query: 142 QAASNLVAGNDLEQTIQQIMDMGGGTWDKETVTRALQAAYNNPERAVDYLYSGIPETAEV 201
A S LV G E + +I MG ++ E V A +A++ N +RAV+ L GIP
Sbjct: 181 DATSALVTGQPYENMVTEITPMG---YEXEQVIAAPRASFKNLDRAVECLVMGIPGVKXQ 237
Query: 202 AVPVAHFPASQAAETG 217
V H QAA TG
Sbjct: 238 VVVDPH----QAASTG 249
>gi|50292795|ref|XP_448830.1| hypothetical protein [Candida glabrata CBS 138]
gi|49528143|emb|CAG61800.1| unnamed protein product [Candida glabrata]
Length = 392
Score = 87.0 bits (214), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 62/204 (30%), Positives = 106/204 (51%), Gaps = 26/204 (12%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPC--GQQLLIHNGKVLKDETT 58
+ +T K K + + ++ S +++AVK+ + + C Q LI +GKVLKD +
Sbjct: 2 VSVTFKNFKKEKYPLDLESSQSIVAVKEAL-----SEKLSCDPSQIKLIFSGKVLKDGDS 56
Query: 59 LADNKVSEDGFLVVMLSKSKTLGSAGASSAQP---AHTTPPTTAPSSNSTPPQEASVPPP 115
+ + ++ M+S K + S+ P + TP + P++++ P +
Sbjct: 57 VESCNFKDGNEVIFMVSAKKATATKVTESSAPKAQSEETPSESTPATSTQPETNQN---- 112
Query: 116 APTPSIPASNVTS-NVTAANANSDTYGQAASNLVAGNDLEQTIQQIMDMGGGTWDKETVT 174
+ PA+N +S N A NA +D V G++ TI++IM+MG +++ V
Sbjct: 113 --ETTEPATNSSSENTEAPNAGTD------DGFVVGSERNATIERIMEMG---YERAEVE 161
Query: 175 RALQAAYNNPERAVDYLYSGIPET 198
RAL+AA+NNP+RAV+YL GIPET
Sbjct: 162 RALRAAFNNPDRAVEYLLMGIPET 185
>gi|344271527|ref|XP_003407589.1| PREDICTED: UV excision repair protein RAD23 homolog B-like
[Loxodonta africana]
Length = 613
Score = 86.7 bits (213), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 65/218 (29%), Positives = 99/218 (45%), Gaps = 54/218 (24%)
Query: 23 VMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVMLSKSKTLGS 82
V A+K+ IE +GKD +P Q LI+ GK+L D+T L + K+ E F+VVM++K K + +
Sbjct: 227 VKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALKEYKIDEKNFVVVMVTKPKAVTT 286
Query: 83 AGASSAQPAHTTPPTTAPSSNSTPPQEASVPPPA-------------PTPSIPASNVTSN 129
PA TP + P++ + + PT PAS S+
Sbjct: 287 -------PAPATPQQSNPATTAAVSSSTAAAVAQAPAPAPALAPTSTPTSITPASTTASS 339
Query: 130 VTA-------------------------------ANANSDTYGQAASNLVAGNDLEQTIQ 158
A ++ S+ + A S LV G E +
Sbjct: 340 EPAPASATQQEKPTEKPTETPVAASPTSTDSTSGDSSRSNLFEDATSALVTGQSYENMVT 399
Query: 159 QIMDMGGGTWDKETVTRALQAAYNNPERAVDYLYSGIP 196
+IM MG +++E V AL+A++NNP+RAV+YL GIP
Sbjct: 400 EIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIP 434
>gi|296816959|ref|XP_002848816.1| nucleotide excision repair protein RAD23 [Arthroderma otae CBS
113480]
gi|238839269|gb|EEQ28931.1| nucleotide excision repair protein RAD23 [Arthroderma otae CBS
113480]
Length = 377
Score = 86.7 bits (213), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 72/207 (34%), Positives = 107/207 (51%), Gaps = 29/207 (14%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
MKLT + LK F I +PS+ ++ VK I +G +P QQ LI++GK+L+D T+
Sbjct: 1 MKLTFRDLKQQKFVIEAEPSEKILDVKGKIAMEKG---WPPSQQKLIYSGKILQDANTVE 57
Query: 61 DNKVSEDGFLVVMLSKSKTLGSAGASSAQ-PA------HTTPPTTAPSSNSTPPQEASVP 113
+ E GF+V M+SK K ++ ASS+Q PA P+ +N T AS
Sbjct: 58 SYNIEEKGFIVCMVSKPKAPSASAASSSQTPAIPPSAPTPATPSAPTRANVT----ASET 113
Query: 114 PPAPTPSIPASNVTSNVTAANANSDTYGQAASNLVAGNDLEQTIQQIMDMGGGTWDKETV 173
P P+P A A S S L+ GN ++ I Q+ MG + + +
Sbjct: 114 PATPSP------------AGGAGSGATFNDPSALLMGNQGQEAIAQMEAMG---FSRSNI 158
Query: 174 TRALQAAYNNPERAVDYLYSGIPETAE 200
RA++AAY NP+RA++YL +GIP+ E
Sbjct: 159 DRAMRAAYFNPDRAIEYLLNGIPDEPE 185
>gi|426197465|gb|EKV47392.1| hypothetical protein AGABI2DRAFT_192582 [Agaricus bisporus var.
bisporus H97]
Length = 404
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 69/203 (33%), Positives = 112/203 (55%), Gaps = 9/203 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
MK+TVKT + F+I ++P+DT+ ++K IE N+P Q +I++GK+L D+ T+
Sbjct: 1 MKITVKTTQQKVFQIDIEPTDTIGSLKAKIESAH---NHPAPTQKIIYSGKILSDDKTIE 57
Query: 61 DNKVSE-DGFLVVMLSKSKTLGSAGASSAQP--AHTTPPTTAPSSNSTPPQEASVPPPAP 117
V E D F++++ T + A P A TPP++ + +T P A +
Sbjct: 58 SCGVKEKDFFVLMVAKPKPTPTPKPEAPAAPTTAEPTPPSSTSPATTTTPSHAETTETSS 117
Query: 118 TPSIPASNVTSNVTAANANSDTYGQAASNLVAGNDLEQTIQQIMDMGGGTWDKETVTRAL 177
PS T++ ++ ++ S + G L+ TIQ +M+MG +D+E V RAL
Sbjct: 118 QPSPLPPPTTTSTSSTSSTEPATLGDGSGFLTGAALQTTIQNMMEMG---FDREQVLRAL 174
Query: 178 QAAYNNPERAVDYLYSGIPETAE 200
+A+YNNP+RAV+YL +GIP E
Sbjct: 175 RASYNNPDRAVEYLMTGIPAHLE 197
>gi|116207852|ref|XP_001229735.1| hypothetical protein CHGG_03219 [Chaetomium globosum CBS 148.51]
gi|88183816|gb|EAQ91284.1| hypothetical protein CHGG_03219 [Chaetomium globosum CBS 148.51]
Length = 392
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 69/197 (35%), Positives = 110/197 (55%), Gaps = 14/197 (7%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
MK+T K LK F + V+P+D + AVK+ I + +G D P Q+L I++GK+LKDE T+
Sbjct: 1 MKVTFKDLKQQKFVLDVEPTDLISAVKQRISEQRGWD--PKLQKL-IYSGKILKDEDTVE 57
Query: 61 DNKVSEDGFLVVMLSKSKTLGSAGASSAQPAHTTPPTTAPSSNSTPPQEASVPPPAPTPS 120
K+ E GF+V +++K K + ASS+ P T AP+ +STP A+ + T +
Sbjct: 58 TYKIEEKGFVVCVVNKPKPAPAPEASSS----AVPATPAPAQSSTPAPPAAPAQTSGTAA 113
Query: 121 IPASNVTSNVTAANANSDTYGQAASNLVAGNDLEQTIQQIMDMGGGTWDKETVTRALQAA 180
+ T N TAA + A+ L G EQ + I +M +++ + A++AA
Sbjct: 114 AVPATPTPNRTAA---PEAAPNDANALATG---EQRAEAIANMEAMGFERAQIDAAMRAA 167
Query: 181 YNNPERAVDYLYSGIPE 197
+ NP+RA+ ++ GIPE
Sbjct: 168 FYNPDRAL-TIHKGIPE 183
>gi|451846054|gb|EMD59365.1| hypothetical protein COCSADRAFT_185234 [Cochliobolus sativus
ND90Pr]
Length = 379
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 93/286 (32%), Positives = 129/286 (45%), Gaps = 49/286 (17%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
MK+T K LK + F I +PS+T+ A+K I Q + + QQ LI++GK+L+D T+
Sbjct: 1 MKITFKDLKQNKFVIEAEPSETIGALKSKI---QAEKGWEVPQQKLIYSGKILQDANTVE 57
Query: 61 DNKVSEDGFLVVMLSKSKTLGSAGASSAQPAHTTPPTT-APSSNSTPPQEASVPPPAPTP 119
+ E GF+V M+SK K +A +S A P+ P PS+ P APT
Sbjct: 58 SYNIEEKGFIVCMVSKPKAAPAASSSKAAPSTPAPAPAQTPSA-----------PQAPTQ 106
Query: 120 SIPASN-VTSNVTAANANSDTYGQAASNLVAGNDLEQTIQQIMDMGGGTWDKETVTRALQ 178
S N + A S S L G + E I + MG D + RA++
Sbjct: 107 SSTTHNAPATPSPAPAQASGERFNDPSALTMGGEREAAIANMESMGFARAD---IDRAMR 163
Query: 179 AAYNNPERAVDYLYSGIPETA------EVAVPVAHFPASQAAETGA-AGAAPVSGVPNSS 231
AA+ NP+RAV+YL +GIPE+A + + P TGA A A P SG
Sbjct: 164 AAFFNPDRAVEYLLTGIPESALQEQAQQTQARAPNSPTPAGGNTGATAQANPSSG--GDE 221
Query: 232 PLNMFPQETLSGAPAG-------------------GLGSLDFLRNN 258
P+N+F E + A SLDFLRNN
Sbjct: 222 PMNLF--EAAAAAQNRGGAGGARSGGTGGAGAGALNANSLDFLRNN 265
>gi|238503490|ref|XP_002382978.1| UV excision repair protein (RadW), putative [Aspergillus flavus
NRRL3357]
gi|220690449|gb|EED46798.1| UV excision repair protein (RadW), putative [Aspergillus flavus
NRRL3357]
Length = 439
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 87/274 (31%), Positives = 129/274 (47%), Gaps = 38/274 (13%)
Query: 8 LKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSED 67
LK F I +PS+TV VK+ I +G + Q LI++GK+L+D+ + + E
Sbjct: 69 LKQQKFVIDAEPSETVGQVKEKISKEKG---WEVPQLKLIYSGKILQDDKAIESYNIEEK 125
Query: 68 GFLVVMLSKSKTLGSAGASSAQPAHTTPPTTAPSSNSTPPQEASVPPPAPTPSIPASNVT 127
GF+V M+SK K A +S+A P+ P+T + ++ P P P+ S A T
Sbjct: 126 GFIVCMVSKPK----ASSSTATPSQA--PSTPSRAATSTPAAPPAPAPSTNASATAPPAT 179
Query: 128 SNVTAANANSDTYGQAASNLVAGNDLEQTIQQIMDMGGGTWDKETVTRALQAAYNNPERA 187
+ AA SD S L++G+ E I + MG + ++ + RA++AA+ NP RA
Sbjct: 180 PSPAAATQPSDAAFNDPSALLSGSQGEAVISHMESMG---FPRDDINRAMRAAFFNPTRA 236
Query: 188 VDYLYSGIPETAEVAVPVAHF-----------PASQAAETGAAGAAPVSGVPNSSPLNMF 236
++YL +GIPE + P AA G A G P+N+F
Sbjct: 237 IEYLLNGIPENIQQEQEQQQQQQQAATATAASPQPPAASAGGNAPATTGG---EEPVNLF 293
Query: 237 -----------PQETLSGAPAG-GLGSLDFLRNN 258
P SG+ AG GL +LDFLRNN
Sbjct: 294 EAAAQAGTQEGPHGARSGSAAGEGLPNLDFLRNN 327
>gi|385306094|gb|EIF50024.1| rad23p [Dekkera bruxellensis AWRI1499]
Length = 421
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 60/198 (30%), Positives = 94/198 (47%), Gaps = 13/198 (6%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
MK+ K K F I V+PSD++++ K+ + Q D P GQ +++GK+LKD+ T
Sbjct: 1 MKVIFKNFKKEKFPIEVEPSDSILSGKEKLSAAQ--DCQP-GQLKFVYSGKILKDDKTFE 57
Query: 61 DNKVSEDGFLVVMLSKSKTLGSAGASSAQPAHTTPPTTAPSSNSTPPQEASVPPPAPTPS 120
V + ++ M SK + S + S N+ ++ +
Sbjct: 58 FFNVKDGDQIIFMKSKLRKQKSKPEPKPEAQAXXGXAEXSSENAAVESSSTSNXXSXPAQ 117
Query: 121 IPASNVTSNVTAANANSDTYGQAASNLVAGNDLEQTIQQIMDMGGGTWDKETVTRALQAA 180
I A N S+ A T+ G + +Q IM MG +++E V RAL AA
Sbjct: 118 IXAENQESSTGAXEFTESTFA-------IGRARQTAVQNIMGMG---FEREQVERALTAA 167
Query: 181 YNNPERAVDYLYSGIPET 198
+NNP+RAV+YL +GIPE+
Sbjct: 168 FNNPDRAVEYLLNGIPES 185
>gi|448122735|ref|XP_004204517.1| Piso0_000368 [Millerozyma farinosa CBS 7064]
gi|448125012|ref|XP_004205075.1| Piso0_000368 [Millerozyma farinosa CBS 7064]
gi|358249708|emb|CCE72774.1| Piso0_000368 [Millerozyma farinosa CBS 7064]
gi|358350056|emb|CCE73335.1| Piso0_000368 [Millerozyma farinosa CBS 7064]
Length = 366
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 61/204 (29%), Positives = 100/204 (49%), Gaps = 25/204 (12%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ K K I V+ +DTV++ K E + + + Q +++GKVL D+ TL
Sbjct: 1 MQVIFKDFKKQKVPIDVELTDTVLSTK---EKLAAEKDCEASQLKFVYSGKVLPDDKTLE 57
Query: 61 DNKVSEDGFLVVMLSKSKTLGSAGASSAQPAHTTPPTTAPSSNSTPPQEASVPPPAPTPS 120
K+ E ++ M+SK+K SA P+ P + P S+ E +PTP+
Sbjct: 58 SLKIKEGDAIIFMISKTK-------KSATPSSEQPQASKPEKESSKESEDK---GSPTPA 107
Query: 121 IPASNVTSNVTAANANSDTYGQAASNLVAGNDLEQTIQQIMDMGGGTWDKETVTRALQAA 180
A + + + Q G++ E I+ IM+MG +++ V AL+AA
Sbjct: 108 --AEEESGAGASGAQAGSIFAQ-------GDERENNIRNIMEMG---YERPQVEAALRAA 155
Query: 181 YNNPERAVDYLYSGIPETAEVAVP 204
+NNP RAV+YL +GIPE+ + P
Sbjct: 156 FNNPHRAVEYLLTGIPESLQAPQP 179
>gi|425766442|gb|EKV05052.1| UV excision repair protein (RadW), putative [Penicillium digitatum
PHI26]
gi|425781661|gb|EKV19612.1| UV excision repair protein (RadW), putative [Penicillium digitatum
Pd1]
Length = 377
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 81/236 (34%), Positives = 117/236 (49%), Gaps = 12/236 (5%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
MKLT K LK F I V+PS+TV VK I Q K Y + +I++GK+L+D+ T+
Sbjct: 1 MKLTFKDLKQEKFVIDVEPSETVREVKVKI--AQEKGEYDAERMKVIYSGKILQDDKTVE 58
Query: 61 DNKVSEDGFLVVMLSKSKTLGSAGASSAQPAHTTPPTTAPSSNSTPPQEASVPPPAPTPS 120
+ E FLV + SK A +S+A +TP AP S PP AP +
Sbjct: 59 SYNIQEKDFLVCLPSKQP---KAASSTAPQVPSTPAARAPVSTPAPPPAPHAAAAAPLFA 115
Query: 121 IPASNVTSNVTAANANSDTYGQAASNLVAGNDLEQTIQQIMDMGGGTWDKETVTRALQAA 180
PA+ + ++ +G S L G+ E Q+ MG D + RA++AA
Sbjct: 116 APATPSPAGAAPPPSSGPAFGD-PSALTMGSAAEGAAAQMEAMGFARTD---IDRAMRAA 171
Query: 181 YNNPERAVDYLYSGIPETAEVAVPVAHFPASQAAETGAAGAAPVSGVPNSSPLNMF 236
+ NP+RA++YL +GIP+ + AS+ A TGAA AAP G + N+F
Sbjct: 172 FYNPDRAIEYLLTGIPDNIQEQQQQQR-QASEPASTGAAPAAPSGG--DEPHFNLF 224
>gi|390335920|ref|XP_001176797.2| PREDICTED: UV excision repair protein RAD23 homolog B-like isoform
1 [Strongylocentrotus purpuratus]
Length = 467
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 57/199 (28%), Positives = 99/199 (49%), Gaps = 12/199 (6%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M + +KTL+ F + ++ S TV +K IE QGKD +P Q LI+ GK+L D+ L+
Sbjct: 1 MLIVLKTLQQQTFRVEIEDSATVRNLKDEIEKTQGKD-FPASGQKLIYAGKILSDDNPLS 59
Query: 61 DNKVSEDGFLVVMLSK---SKTLGSAGASSAQPAHT-----TPPTTAPSSNSTPPQEASV 112
+ E F+VVM++K ++ A+P T ++AP + +A+
Sbjct: 60 SYNIDEKSFVVVMVTKRLQTEEKKEEKKEEAKPQETAAAASASASSAPVAMEEGTTKAAE 119
Query: 113 PPPAPTPSIPASNVTSNVTAANANSDTYGQAASNLVAGNDLEQTIQQIMDMGGGTWDKET 172
+ + T +++ + A S LV G + + + ++M +G + ++
Sbjct: 120 EKKTEEKAAEPAAETKTQEESSSGLQAFHSAESTLVTGEEYQNMVTELMSLG---FPRDK 176
Query: 173 VTRALQAAYNNPERAVDYL 191
V RA+QA+YNNP RA +YL
Sbjct: 177 VIRAMQASYNNPNRAAEYL 195
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 43/72 (59%), Gaps = 4/72 (5%)
Query: 126 VTSNVTAANANSDTYGQAASNLVAGNDLEQTIQQIMDMGGGTWDKETVTRALQAAYNNPE 185
V SN A A+ + A S LV G + + + ++M +G + ++ V RA+QA+YNNP
Sbjct: 196 VVSNKGGAIAHQ-AFHSAESTLVTGEEYQNMVTELMSLG---FPRDKVIRAMQASYNNPN 251
Query: 186 RAVDYLYSGIPE 197
RA +YL GIP+
Sbjct: 252 RAAEYLVVGIPD 263
>gi|453087458|gb|EMF15499.1| UV excision repair protein Rad23 [Mycosphaerella populorum SO2202]
Length = 392
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 69/198 (34%), Positives = 102/198 (51%), Gaps = 13/198 (6%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
MKLT K LK F I +PS+T+ AVK I +G D P Q+L I++GK+L+D+ T+
Sbjct: 1 MKLTFKDLKQQKFTIEAEPSETIGAVKGKISAEKGWD--PSTQKL-IYSGKILQDDNTIE 57
Query: 61 DNKVSEDGFLVVMLSKSKTLGSAGASSAQPAHTTPPTTAPSSNSTPPQEASVPPPAPTPS 120
K+ E GF+V M SK K + A A PA T AP + + T
Sbjct: 58 SYKIEEKGFIVCMTSKPKAAATKPAEPATPAKAATSTPAPPAAPAHTTSS-------TSQ 110
Query: 121 IPASNVTSNVTAANANSDTYGQAASNLVAGNDLEQTIQQIMDMGGGTWDKETVTRALQAA 180
PA+ + +A+ +N + S L G EQ I M + ++ + A++AA
Sbjct: 111 PPATPSPAPASASASNEERSFNDPSALAMG---EQRAAAIAGMEAMGFARDQIDAAMRAA 167
Query: 181 YNNPERAVDYLYSGIPET 198
+ NP+RAV+YL +GIPE+
Sbjct: 168 FFNPDRAVEYLLNGIPES 185
>gi|365761179|gb|EHN02849.1| Rad23p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 397
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 61/201 (30%), Positives = 101/201 (50%), Gaps = 18/201 (8%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
+ LT K K + ++PS+T+ K + + Q LI++GKVL+D T++
Sbjct: 2 VSLTFKNFKKEKVPLDLEPSNTIFEAKTKLAQSTSCEE---SQIKLIYSGKVLQDSKTVS 58
Query: 61 DNKVSEDGFLVVMLSKSKTLGSAGASSAQPAHTTPPTTAPSSNSTPPQEASVP---PPAP 117
+ + + +V M+S+ K S + T PP ++ + P E S A
Sbjct: 59 ECGLKDGDQVVFMISQKK--------STKTKVTEPPAAPETATTVPAGEPSTEQATASAD 110
Query: 118 TPSIPASNVTSNVTAANANSDTYGQAAS-NLVAGNDLEQTIQQIMDMGGGTWDKETVTRA 176
P+ PA+ N+N++ ++ V G +TI++IM+MG + +E V RA
Sbjct: 111 APTAPAAEELQPQEEPNSNTEQVESVSTPGFVVGTQRNETIERIMEMG---YPREEVERA 167
Query: 177 LQAAYNNPERAVDYLYSGIPE 197
L+AA+NNP+RAV+YL GIPE
Sbjct: 168 LRAAFNNPDRAVEYLLMGIPE 188
>gi|302680567|ref|XP_003029965.1| hypothetical protein SCHCODRAFT_68753 [Schizophyllum commune H4-8]
gi|300103656|gb|EFI95062.1| hypothetical protein SCHCODRAFT_68753 [Schizophyllum commune H4-8]
Length = 383
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 67/200 (33%), Positives = 110/200 (55%), Gaps = 15/200 (7%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
MK+TVKT + F+I V+ +TV +K+ I D G +P Q +I++GK+L D+ T+
Sbjct: 1 MKITVKTTQQKVFQIDVEGPETVGVLKQKISDAHG---HPVASQKIIYSGKILPDDKTIE 57
Query: 61 DNKVSEDGFLVVMLSKSKTLGSAGASSAQPAHTTPPTTAPSSNSTPPQEASVPPPAPTPS 120
+ E FLV+M+SK K + ++A P+ +TP S+ + + +
Sbjct: 58 SCGIKEKDFLVLMVSKPKPTPAPAPAAAAPSTSTPAAAPASTPAQSTPAPA--------A 109
Query: 121 IPASNVTSNVTAANANSDTYGQAASNLVAGNDLEQTIQQIMDMGGGTWDKETVTRALQAA 180
PA+ AN+ +G +S V GN L++T+ + +MG + +E V RAL+A+
Sbjct: 110 APAAAPAPQAATPAANAPAFGDMSS-FVTGNVLQETVNNMTEMG---FPREQVLRALRAS 165
Query: 181 YNNPERAVDYLYSGIPETAE 200
+NNP+RAV+YL +GIP E
Sbjct: 166 FNNPDRAVEYLMNGIPAHLE 185
>gi|451994966|gb|EMD87435.1| hypothetical protein COCHEDRAFT_1206663 [Cochliobolus
heterostrophus C5]
Length = 379
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 95/285 (33%), Positives = 129/285 (45%), Gaps = 47/285 (16%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
MK+T K LK + F I +PS+T+ A+K I Q + + QQ LI++GK+L+D T+
Sbjct: 1 MKITFKDLKQNKFVIEAEPSETIGALKSKI---QAEKGWEVPQQKLIYSGKILQDANTVE 57
Query: 61 DNKVSEDGFLVVMLSKSKTLGSAGASSAQPAHTTPPTTAPSSNSTPPQEASVPPPAPTPS 120
+ E GF+V M+SK K A +A + P T AP+ TP P APT S
Sbjct: 58 SYNIEEKGFIVCMVSKPKA-----APAASSSRAAPSTPAPAPAQTPS-----APQAPTQS 107
Query: 121 IPASN-VTSNVTAANANSDTYGQAASNLVAGNDLEQTIQQIMDMGGGTWDKETVTRALQA 179
N + A S S L G + E I + MG D + RA++A
Sbjct: 108 STTHNAPATPSPAPAQASGERFNDPSALTMGGEREAAIANMESMGFARAD---IDRAMRA 164
Query: 180 AYNNPERAVDYLYSGIPETA---EVAVPVAHFPASQAAETGAAGAA----PVSGVPNSSP 232
A+ NP+RAV+YL +GIPE+A + A P S G AGA P SG P
Sbjct: 165 AFFNPDRAVEYLLTGIPESALQEQAQQTQARAPNSPTPAGGNAGATAQANPSSG--GDEP 222
Query: 233 LNMFPQETLSGAPAG-------------------GLGSLDFLRNN 258
+N+F E + A SLDFLRNN
Sbjct: 223 MNLF--EAAAAAQNRGGAGGARSGGTGGAGGGALNANSLDFLRNN 265
>gi|9755819|emb|CAC01850.1| putative protein [Arabidopsis thaliana]
Length = 142
Score = 85.1 bits (209), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 39/76 (51%), Positives = 53/76 (69%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
MK+ VKTLKG FEI V+P+D+V VKKNIE V G YP QQ+LIH + L+DETT+
Sbjct: 1 MKIIVKTLKGIRFEIEVKPNDSVAEVKKNIETVMGASEYPAAQQILIHKREKLRDETTME 60
Query: 61 DNKVSEDGFLVVMLSK 76
NKV + + ++++K
Sbjct: 61 ANKVFDKSVIAIIITK 76
>gi|346975858|gb|EGY19310.1| nucleotide excision repair protein RAD23 [Verticillium dahliae
VdLs.17]
Length = 394
Score = 85.1 bits (209), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 67/202 (33%), Positives = 107/202 (52%), Gaps = 17/202 (8%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
MK+T K LK + F + V+P+D + VK+ I + +G D +Q LI++GK+LKDE T+
Sbjct: 1 MKVTFKDLKQNKFTLDVEPTDLISTVKQRISEEKGWD---AKEQKLIYSGKILKDEETVE 57
Query: 61 DNKVSEDGFLVVMLSKSKTLGSAGASSAQPAHTTPP-TTAPSSNSTPPQEASVPPPAPTP 119
K+ E GF+V M+ K K +A A+S+ +TP A + +AS P+
Sbjct: 58 SYKIEEKGFVVCMIQKPKAKPAAPAASSSAVPSTPAQPVAATPAVPAAPQASTQAAVPST 117
Query: 120 SIPASNVTSNVTAANAN-SDTYGQAASNLVAGNDLEQTIQQIMDMGGGTWDKETVTRALQ 178
PA+ V + A + S G + +VA +M +++ + AL+
Sbjct: 118 PTPAARVGAGGDGAPTDPSMAMGAQRAEVVA------------NMEAMGFERSQIDAALR 165
Query: 179 AAYNNPERAVDYLYSGIPETAE 200
AA+ NP+RAV+YL +GIPE A+
Sbjct: 166 AAFYNPDRAVEYLLTGIPEDAQ 187
>gi|50550853|ref|XP_502899.1| YALI0D16401p [Yarrowia lipolytica]
gi|49648767|emb|CAG81090.1| YALI0D16401p [Yarrowia lipolytica CLIB122]
Length = 359
Score = 85.1 bits (209), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 88/277 (31%), Positives = 131/277 (47%), Gaps = 39/277 (14%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVK-KNIEDVQGKDNYPCGQQLLIHNGKVLKDETTL 59
M + ++ K + + V+PSDTV +K KN E GKD Y G Q +I++GK+L + T++
Sbjct: 1 MLVKLRDTKRQQWTVDVEPSDTVETLKTKNAE---GKD-YGVGDQKMIYSGKILANTTSI 56
Query: 60 ADNKVSEDGFLVVMLS--KSKTLGSAGASSAQPAHTTPPTTAPSSNSTPPQEASVPPP-A 116
+ ED F++ M+S K K +A A++A A + TP SV P A
Sbjct: 57 ESLNLKEDAFIICMISKPKVKAAAAAPAAAAPVAAAPAAAEPAVAPVTPATSRSVATPGA 116
Query: 117 PTPSIPASNVTSNVTAANANSDTYG----QAASNLVAGNDLEQTIQQIMDMGGGTWDKET 172
PT S T T A++ T G ++ A + I ++DMG + ++
Sbjct: 117 PTNSGNVVGNTETPTTGGADASTTGDIGAESGPAASATAAVTTAINNMVDMG---YPRDQ 173
Query: 173 VTRALQAAYNNPERAVDYLYSGIP-----ETAEVAVPVAHFPASQAAETGAAGAAPVSGV 227
V A++AAYNNPERAV+YL +GIP E A+ VP ++ AE A S
Sbjct: 174 VEAAMRAAYNNPERAVEYLLTGIPDHVIGEEADDDVPESNTDTDLFAEAVAQQGQGASVA 233
Query: 228 PNSSPLNMFPQETLSGAPAGGLGSLDFLRNNQQVWSL 264
PN+S +LDFLR+N Q +
Sbjct: 234 PNTS-------------------ALDFLRDNPQFIEM 251
>gi|302834487|ref|XP_002948806.1| hypothetical protein VOLCADRAFT_104016 [Volvox carteri f.
nagariensis]
gi|300265997|gb|EFJ50186.1| hypothetical protein VOLCADRAFT_104016 [Volvox carteri f.
nagariensis]
Length = 366
Score = 85.1 bits (209), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 64/195 (32%), Positives = 98/195 (50%), Gaps = 30/195 (15%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
MKLT +T+ G F + + S T+ A+K +++ Q + + L++ GKVL D TT+
Sbjct: 1 MKLTFRTIAGKSFSVEAEESLTIGALKDKVQEAQPDCHRDAMK--LVYKGKVLDDGTTVG 58
Query: 61 DNKVSEDGFLVVMLSKSKTLGSAGASSAQPAHTTPPTTAPSSNSTPPQEASVPPPAPTPS 120
DN+++E GF+VV + K A + PA P A + +
Sbjct: 59 DNQITEQGFIVVFVQPKKAEAPKPAPAPAPAPAAAPAAAAAPAAA--------------- 103
Query: 121 IPASNVTSNVTAANANSDTYGQAASNLVAGNDLEQTIQQIMDMGGGTWDKETVTRALQAA 180
A +D Y AAS L+AG+ LE I I +MG + +E V RA++AA
Sbjct: 104 ----------APAAHPADAYTAAASGLLAGSALETAIANICEMG---FAREEVIRAMRAA 150
Query: 181 YNNPERAVDYLYSGI 195
+NNP+RAV+YL +GI
Sbjct: 151 FNNPDRAVEYLMTGI 165
>gi|240256296|ref|NP_197113.4| uncharacterized protein [Arabidopsis thaliana]
gi|332004862|gb|AED92245.1| uncharacterized protein [Arabidopsis thaliana]
Length = 171
Score = 85.1 bits (209), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 39/76 (51%), Positives = 53/76 (69%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
MK+ VKTLKG FEI V+P+D+V VKKNIE V G YP QQ+LIH + L+DETT+
Sbjct: 1 MKIIVKTLKGIRFEIEVKPNDSVAEVKKNIETVMGASEYPAAQQILIHKREKLRDETTME 60
Query: 61 DNKVSEDGFLVVMLSK 76
NKV + + ++++K
Sbjct: 61 ANKVFDKSVIAIIITK 76
>gi|449300177|gb|EMC96189.1| hypothetical protein BAUCODRAFT_33528 [Baudoinia compniacensis UAMH
10762]
Length = 392
Score = 84.7 bits (208), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 65/200 (32%), Positives = 101/200 (50%), Gaps = 15/200 (7%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
MKLT K LK F I +PS+T+ A+K+ I + +G + Q LI++GK+L+D+ T+
Sbjct: 1 MKLTFKDLKQQKFTIDAEPSETIGALKRKISEEKG---WEPSTQKLIYSGKILQDDNTIE 57
Query: 61 DNKVSEDGFLVVMLSKSKTLGSAGASSAQPAHTTPPTTAPSSNSTPPQEASVPPPAPTPS 120
K+ E GF+V M SK K A P P T A + ++ A V P T +
Sbjct: 58 SYKIEEKGFIVCMTSKPK---------AAPKPVEPSTPAQAPSTPAAPPAPVAAPNTTAA 108
Query: 121 IPASNVTSNVTAANANSDTYGQAASNLVAGNDLEQTIQQIMDMGGGTWDKETVTRALQAA 180
P + + A S L G + + + MG + ++ + RA++AA
Sbjct: 109 QPPPTPSPAPASTAAADPASWNDPSALAMGEQRQAAVANMEAMG---FPRDQIDRAMRAA 165
Query: 181 YNNPERAVDYLYSGIPETAE 200
+ NP+RAV+YL +GIP +AE
Sbjct: 166 FFNPDRAVEYLLNGIPASAE 185
>gi|190346878|gb|EDK39064.2| hypothetical protein PGUG_03162 [Meyerozyma guilliermondii ATCC
6260]
Length = 368
Score = 84.3 bits (207), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 59/180 (32%), Positives = 98/180 (54%), Gaps = 16/180 (8%)
Query: 23 VMAVKKNIEDVQGKDNYPCGQQL-LIHNGKVLKDETTLADNKVSEDGFLVVMLSKSKTLG 81
V+ K+ + QG + +QL L+++GKVL+D+ T+ D+KV E ++ M++K K +
Sbjct: 13 VLVAKQKLAAEQGCE----AEQLKLVYSGKVLQDDKTITDSKVKEGDSIIFMVAKKKPV- 67
Query: 82 SAGASSAQPAHTTPPTTAPSSNSTPPQEASVPPPAPTPSIPASNVTSNVTAANANSDTYG 141
S A+P T T + T EAS S ++ TSN + + + G
Sbjct: 68 ----SDAKPETKTSETAGAGKSETKATEASTSTAGNETSTSGNSGTSNTSGVSGSGSGSG 123
Query: 142 QAAS---NLVAGNDLEQTIQQIMDMGGGTWDKETVTRALQAAYNNPERAVDYLYSGIPET 198
S + +G++ E +IQ IM+MG +++ V AL+A++NNP RAV+YL +GIPE+
Sbjct: 124 AVTSGGGDFASGDEREASIQNIMEMG---YERTQVEAALRASFNNPHRAVEYLLTGIPES 180
>gi|256273801|gb|EEU08724.1| Rad23p [Saccharomyces cerevisiae JAY291]
Length = 398
Score = 84.3 bits (207), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 62/205 (30%), Positives = 105/205 (51%), Gaps = 25/205 (12%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPC--GQQLLIHNGKVLKDETT 58
+ LT K K + ++PS+T++ K + + C Q LI++GKVL+D T
Sbjct: 2 VSLTFKNFKKEKVPLDLEPSNTILETKTKL-----AQSISCEESQIKLIYSGKVLQDSKT 56
Query: 59 LADNKVSEDGFLVVMLSKSKTLGSAGASSAQPAHTTPPTTAPSSNSTPPQEASV---PPP 115
+++ + + +V M+S+ K+ + T P AP S +TP +E S P
Sbjct: 57 VSECGLKDGDQVVFMVSQKKSTKT---------KVTEPPIAPESATTPGRENSTEASPST 107
Query: 116 APTPSIPASNVTSNVTAANANSDTYGQAASN---LVAGNDLEQTIQQIMDMGGGTWDKET 172
+ + A+ + + T G +++ V G + +TI++IM+MG + +E
Sbjct: 108 DASAAPAATAPEGSQPQEEQTATTEGTESASTPGFVVGTERNETIERIMEMG---YQREE 164
Query: 173 VTRALQAAYNNPERAVDYLYSGIPE 197
V RAL+AA+NNP+RAV+YL GIPE
Sbjct: 165 VERALRAAFNNPDRAVEYLLMGIPE 189
>gi|119182327|ref|XP_001242306.1| hypothetical protein CIMG_06202 [Coccidioides immitis RS]
Length = 418
Score = 84.3 bits (207), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 61/200 (30%), Positives = 103/200 (51%), Gaps = 15/200 (7%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
+ + ++ LK F I +PS+T+ +K+ I +G D QQ LI++GK+L+D T+
Sbjct: 48 LSVLLQDLKQQKFTIEAEPSETIGQLKEKISQEKGWD---AAQQKLIYSGKILQDVNTIE 104
Query: 61 DNKVSEDGFLVVMLSKSKTLGSAGASSAQPAHTTPPTTAPSSNSTPPQEASVPPPAPTPS 120
+ E GF+V M+SK K AQPA +TP + + + ++ P+
Sbjct: 105 SYNIEEKGFIVCMVSKPK---------AQPAPSTPAGPSQTPATPAAPSSTPAAPSAPAP 155
Query: 121 IPASNVTSNVTAANANSDTYGQAASNLVAGNDLEQTIQQIMDMGGGTWDKETVTRALQAA 180
+ T + A + S L+ G E +QQ+ MG + ++ + RA++AA
Sbjct: 156 ATNAPSAPPATPSPATAGATFNDPSALLMGPQSETAVQQMEAMG---FARDDIQRAMRAA 212
Query: 181 YNNPERAVDYLYSGIPETAE 200
+ NP+RA++YL SGIP+ AE
Sbjct: 213 FFNPDRAIEYLLSGIPDHAE 232
>gi|45198876|ref|NP_985905.1| AFR358Wp [Ashbya gossypii ATCC 10895]
gi|44984905|gb|AAS53729.1| AFR358Wp [Ashbya gossypii ATCC 10895]
gi|374109136|gb|AEY98042.1| FAFR358Wp [Ashbya gossypii FDAG1]
Length = 413
Score = 84.3 bits (207), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 68/222 (30%), Positives = 112/222 (50%), Gaps = 27/222 (12%)
Query: 1 MKLTV--KTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETT 58
M +T+ K K +++ PS T+ K+ + + D Q +I +GKVL+D T
Sbjct: 1 MNITIHFKDFKKERLPLQLSPSATIAEAKQMLARAKQCDE---SQLKMIFSGKVLQDGNT 57
Query: 59 LADNKVSEDGFLVVMLSKSKTLGSAGASSAQPAHTTPPTTAPSSNSTPPQEASVPPPAPT 118
L K+ + ++ M+SK K A ++P + P+ P S ++ E T
Sbjct: 58 LEGCKLKDGDQVIFMISKKK----AETRVSEPEPASEPSGGPQSEASTGLET-----VTT 108
Query: 119 PSIPASNVTSNVTAANANSDTYGQAASNLVAGNDLEQTIQQIMDMGGGTWDKETVTRALQ 178
P + A+ V T A S ++ V G+ QT+++IM+MG +D+ V AL+
Sbjct: 109 PGVSAA-VDPESTGAAVGS------GASFVTGSARSQTVERIMEMG---YDRAQVEMALR 158
Query: 179 AAYNNPERAVDYLYSGIPETAEVAVPVAHFPASQAAETGAAG 220
AA+NNP+RAV+YL +GIPE + + + F A Q+A A+G
Sbjct: 159 AAFNNPDRAVEYLLTGIPEHLQNS---SAFSARQSASVAASG 197
>gi|342883708|gb|EGU84158.1| hypothetical protein FOXB_05335 [Fusarium oxysporum Fo5176]
Length = 390
Score = 84.0 bits (206), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 64/203 (31%), Positives = 100/203 (49%), Gaps = 22/203 (10%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
MK+T K LK F + V+PS+ + AVK+ I +G + Q LI++GK+LKDE T+
Sbjct: 1 MKVTFKDLKQQKFTLDVEPSELISAVKEKISAEKG---WEPKLQKLIYSGKILKDEETVG 57
Query: 61 DNKVSEDGFLVVMLSKSKTLGS-----AGASSAQPAHTTPPTTAPSSNSTPPQEASVPPP 115
+ E GF+V M++K K + A A PA T A + P
Sbjct: 58 SYNIEEKGFVVCMVNKPKPKPEPKAAESSAPPATPAQAVANTPAAPAAPAHSSSHQTAVP 117
Query: 116 A-PTPSIPASNVTSNVTAANANSDTYGQAASNLVAGNDLEQTIQQIMDMGGGTWDKETVT 174
A PTP + +A + + S L G+ + I + MG +++ +
Sbjct: 118 ATPTPQ----------RSVDAGTGAQAEEPSGLAMGSQRTEAIANMEAMG---FERSQIE 164
Query: 175 RALQAAYNNPERAVDYLYSGIPE 197
A++AA+NNP+RAV+YL +GIP+
Sbjct: 165 AAMRAAFNNPDRAVEYLLNGIPD 187
>gi|68066300|ref|XP_675133.1| DNA repair protein RAD23 [Plasmodium berghei strain ANKA]
gi|56494136|emb|CAH99316.1| DNA repair protein RAD23, putative [Plasmodium berghei]
Length = 368
Score = 84.0 bits (206), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 60/195 (30%), Positives = 102/195 (52%), Gaps = 18/195 (9%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
MK+ V+TL+ + EI V +DT+ +KK IE+V + PC +Q LI +G +L +E +
Sbjct: 1 MKIKVRTLQNTEEEINVDSNDTISDLKKKIENVFPE--MPCDKQKLIFSGNILMNEHKVV 58
Query: 61 DNKVSEDGFLVVMLSKSKTLGSAGASSAQPAHTTPPTTAPSSNSTPPQEASVPPPAPTPS 120
D + E+ ++VM+++ K + S +S + A+ SS+S ++
Sbjct: 59 D-ILKENDIVIVMVTR-KIITSKKNNSTKNANE-----LASSDSLKNKDEK------NSD 105
Query: 121 IPASNVTSNVTAANANSDTYGQAASNLVAGNDLEQTIQQIMDMGGGTWDKETVTRALQAA 180
++ T N N S+ S L+ G+ L++TI I MG +++E V +A+ A
Sbjct: 106 DKNNDKTKNTDTENKESENISNPESILLTGDKLKETIDNICAMG---FERELVQKAMTLA 162
Query: 181 YNNPERAVDYLYSGI 195
YNNP A+DYL +G
Sbjct: 163 YNNPNVAIDYLTNGF 177
>gi|322707150|gb|EFY98729.1| nucleotide excision repair protein RAD23 [Metarhizium anisopliae
ARSEF 23]
Length = 383
Score = 83.6 bits (205), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 65/205 (31%), Positives = 101/205 (49%), Gaps = 27/205 (13%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHN-GKVLKDETTL 59
MK+T + LK F + V+P+D + AVK+ I +G D P Q+L+ GK+LKD+ T+
Sbjct: 1 MKVTFRDLKQQKFVLEVEPTDLISAVKEKISGEKGWD--PKHQKLIYSGLGKILKDDETV 58
Query: 60 ADNKVSEDGFLVVMLSKSKTLGSAGASSAQPAHTTPPTTAPSSNSTPPQEA-------SV 112
A + E GF+V M++K K + A S+ A P +S P S
Sbjct: 59 ASYNIEEKGFVVCMVNKPKEKPAPAAESSAAAPPATPAQPVASTPAVPAAPAQPSTTQSA 118
Query: 113 PPPAPTPSIPASNVTSNVTAANANSDTYGQAASNLVAGNDLEQTIQQIMDMGGGTWDKET 172
P PTP + + G+ S L G + + I + MG +++
Sbjct: 119 APATPTPQ--------------RSGEAGGETGSGLAMGAERAEAITNMEAMG---FERSQ 161
Query: 173 VTRALQAAYNNPERAVDYLYSGIPE 197
+ A++AA+NNP+RAV+YL +GIPE
Sbjct: 162 IEAAMRAAFNNPDRAVEYLLNGIPE 186
>gi|146418936|ref|XP_001485433.1| hypothetical protein PGUG_03162 [Meyerozyma guilliermondii ATCC
6260]
Length = 368
Score = 83.6 bits (205), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 59/180 (32%), Positives = 97/180 (53%), Gaps = 16/180 (8%)
Query: 23 VMAVKKNIEDVQGKDNYPCGQQL-LIHNGKVLKDETTLADNKVSEDGFLVVMLSKSKTLG 81
V+ K+ + QG + +QL L+++GKVL+D+ T+ D+KV E ++ M++K K +
Sbjct: 13 VLVAKQKLAAEQGCE----AEQLKLVYSGKVLQDDKTITDSKVKEGDSIIFMVAKKKPV- 67
Query: 82 SAGASSAQPAHTTPPTTAPSSNSTPPQEASVPPPAPTPSIPASNVTSNVTAANANSDTYG 141
S A+P T T + T EAS S ++ TSN + + + G
Sbjct: 68 ----SDAKPETKTSETAGAGKSETKATEASTSTAGNETSTSGNSGTSNTSGVSGSGSGSG 123
Query: 142 QAAS---NLVAGNDLEQTIQQIMDMGGGTWDKETVTRALQAAYNNPERAVDYLYSGIPET 198
S + G++ E +IQ IM+MG +++ V AL+A++NNP RAV+YL +GIPE+
Sbjct: 124 AVTSGGGDFALGDEREASIQNIMEMG---YERTQVEAALRASFNNPHRAVEYLLTGIPES 180
>gi|124802198|ref|XP_001347399.1| DNA repair protein RAD23, putative [Plasmodium falciparum 3D7]
gi|23494978|gb|AAN35312.1|AE014830_56 DNA repair protein RAD23, putative [Plasmodium falciparum 3D7]
Length = 389
Score = 83.6 bits (205), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 55/196 (28%), Positives = 99/196 (50%), Gaps = 6/196 (3%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
MK+ V+TL+ + EI V P D+++ +KK +E V + P +Q LI +GK+LKDE
Sbjct: 1 MKIKVRTLQNNEEEINVDPDDSILDLKKKVEVVLA--DMPSDKQKLIFSGKILKDEDKAT 58
Query: 61 DNKVSEDGFLVVMLSKSKTLGSAGASSAQPAHTTPPTTAPSSNSTPPQEASVPPPAPTPS 120
D + ++ ++VM+++ + + ++N+ + + T
Sbjct: 59 D-ILKDNDTVIVMVTRRIINKNNQKEDINKESLSKIENNNNNNNNKSDDNINVTTSNTEE 117
Query: 121 IPASNVTSNVTAANANSDTYGQAASNLVAGNDLEQTIQQIMDMGGGTWDKETVTRALQAA 180
+ N + +++ A S L+ G+ L+++I I MG ++KE V +A+ A
Sbjct: 118 QKENKENKNDNTNDNIYNSFNNAESMLLTGDKLKESIDNICAMG---FEKEQVKKAMILA 174
Query: 181 YNNPERAVDYLYSGIP 196
YNNP RA+DYL +G P
Sbjct: 175 YNNPNRAIDYLTNGFP 190
>gi|170092959|ref|XP_001877701.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164647560|gb|EDR11804.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 378
Score = 83.6 bits (205), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 66/211 (31%), Positives = 110/211 (52%), Gaps = 23/211 (10%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
MK+T+KT + F+I + SDT+ +K I++ QG +P Q +I++GK+L ++ T+
Sbjct: 1 MKITIKTTQQKVFQIEIDTSDTIAVLKDKIQESQG---HPTAAQKIIYSGKILSNDKTID 57
Query: 61 DNKVSEDGFLVVMLSKSKTLGSAGASSAQPAHTTPPTTAPSSNSTPPQEASVPPPAPTPS 120
+ E FLV+M+SK K +A AS+ ++ P S P A+ P +
Sbjct: 58 SCGIKEKDFLVLMVSKPKPTPAATAST-----SSAPQDVQMDTSPPAPPAAPPSSSTPAP 112
Query: 121 IPASNVTS-----------NVTAANANSDTYGQAASNLVAGNDLEQTIQQIMDMGGGTWD 169
+ S+ TS TA A + +G S ++G L+ I + +MG +
Sbjct: 113 VLVSDTTSVTQPTTPAATPAATAPPAVAPAFGD-MSTFLSGEALQSAITNMTEMG---FP 168
Query: 170 KETVTRALQAAYNNPERAVDYLYSGIPETAE 200
++ V RA++A+YNN +RAV+YL +GIP E
Sbjct: 169 RDQVLRAMRASYNNADRAVEYLMTGIPAHLE 199
>gi|323305178|gb|EGA58925.1| Rad23p [Saccharomyces cerevisiae FostersB]
Length = 401
Score = 83.6 bits (205), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 61/206 (29%), Positives = 103/206 (50%), Gaps = 27/206 (13%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPC--GQQLLIHNGKVLKDETT 58
+ LT K K + ++PS+T++ K + + C Q LI++GKVL+D T
Sbjct: 2 VSLTFKNFKKEKVPLDLEPSNTILETKTKL-----AQSISCEESQIKLIYSGKVLQDSKT 56
Query: 59 LADNKVSEDGFLVVMLSKSKTLGSAGASSAQPAHTTPPTTAPSSNSTPPQEASVPPPAPT 118
+++ + + +V M+S+ K+ + T P AP S +TP +E S +P+
Sbjct: 57 VSECGLKDGDQVVFMVSQKKSTKT---------KVTEPPIAPESATTPGRENSTEA-SPS 106
Query: 119 PSIPASNVTSNVTAANANSD-------TYGQAASNLVAGNDLEQTIQQIMDMGGGTWDKE 171
A+ + + + T + V G + +TI++IM+MG + +E
Sbjct: 107 TDASAAPAATAPEGSQPQEEQTATTERTESASTPGFVVGTERNETIERIMEMG---YQRE 163
Query: 172 TVTRALQAAYNNPERAVDYLYSGIPE 197
V RAL+AA+NNP+RAV+YL GIPE
Sbjct: 164 EVERALRAAFNNPDRAVEYLLMGIPE 189
>gi|259145863|emb|CAY79123.1| Rad23p [Saccharomyces cerevisiae EC1118]
gi|323349008|gb|EGA83243.1| Rad23p [Saccharomyces cerevisiae Lalvin QA23]
Length = 408
Score = 83.6 bits (205), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 61/206 (29%), Positives = 103/206 (50%), Gaps = 27/206 (13%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPC--GQQLLIHNGKVLKDETT 58
+ LT K K + ++PS+T++ K + + C Q LI++GKVL+D T
Sbjct: 2 VSLTFKNFKKEKVPLDLEPSNTILETKTKL-----AQSISCEESQIKLIYSGKVLQDSKT 56
Query: 59 LADNKVSEDGFLVVMLSKSKTLGSAGASSAQPAHTTPPTTAPSSNSTPPQEASVPPPAPT 118
+++ + + +V M+S+ K+ + T P AP S +TP +E S +P+
Sbjct: 57 VSECGLKDGDQVVFMVSQKKSTKT---------KVTEPPIAPESATTPGRENSTEA-SPS 106
Query: 119 PSIPASNVTSNVTAANANSD-------TYGQAASNLVAGNDLEQTIQQIMDMGGGTWDKE 171
A+ + + + T + V G + +TI++IM+MG + +E
Sbjct: 107 TDASAAPAATAPEGSQPQEEQTATTERTESASTPGFVVGTERNETIERIMEMG---YQRE 163
Query: 172 TVTRALQAAYNNPERAVDYLYSGIPE 197
V RAL+AA+NNP+RAV+YL GIPE
Sbjct: 164 EVERALRAAFNNPDRAVEYLLMGIPE 189
>gi|401840717|gb|EJT43420.1| RAD23-like protein [Saccharomyces kudriavzevii IFO 1802]
Length = 397
Score = 83.6 bits (205), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 60/201 (29%), Positives = 96/201 (47%), Gaps = 18/201 (8%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
+ LT K K + ++PS+T+ K + + Q LI++GKVL+D T++
Sbjct: 2 VSLTFKNFKKEKVPLDLEPSNTIFEAKTKLAQSTSCEE---SQIKLIYSGKVLQDSKTVS 58
Query: 61 DNKVSEDGFLVVMLSKSKTLGSAGASSAQPAHTTPPTTAPSSNSTPPQEASVPPPAPTPS 120
+ + + +V M+S+ K S + T PP ++ + P E S +
Sbjct: 59 ECGLKDGDQVVFMISQKK--------STKTKVTEPPAAPETATTVPAGEPSTEQATASAD 110
Query: 121 IPASNVTSNVTAANANSDTYGQAAS----NLVAGNDLEQTIQQIMDMGGGTWDKETVTRA 176
P + + S QA S V G +TI++IM+MG + +E V RA
Sbjct: 111 APTAPAAEELQPQEEPSSNTEQAESVSTPGFVVGTQRNETIERIMEMG---YPREEVERA 167
Query: 177 LQAAYNNPERAVDYLYSGIPE 197
L+AA+NNP+RAV+YL GIPE
Sbjct: 168 LRAAFNNPDRAVEYLLMGIPE 188
>gi|398364251|ref|NP_010877.3| Rad23p [Saccharomyces cerevisiae S288c]
gi|418413|sp|P32628.1|RAD23_YEAST RecName: Full=UV excision repair protein RAD23
gi|409247|gb|AAA16070.1| DNA repair protein [Saccharomyces cerevisiae]
gi|603642|gb|AAB65005.1| Rad23p [Saccharomyces cerevisiae]
gi|51013487|gb|AAT93037.1| YEL037C [Saccharomyces cerevisiae]
gi|151944674|gb|EDN62933.1| radiation sensitive protein [Saccharomyces cerevisiae YJM789]
gi|190405529|gb|EDV08796.1| UV excision repair protein RAD23 [Saccharomyces cerevisiae RM11-1a]
gi|285811588|tpg|DAA07616.1| TPA: Rad23p [Saccharomyces cerevisiae S288c]
gi|323309458|gb|EGA62674.1| Rad23p [Saccharomyces cerevisiae FostersO]
gi|323333880|gb|EGA75269.1| Rad23p [Saccharomyces cerevisiae AWRI796]
gi|349577621|dbj|GAA22789.1| K7_Rad23p [Saccharomyces cerevisiae Kyokai no. 7]
gi|365765999|gb|EHN07500.1| Rad23p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
gi|392299909|gb|EIW11001.1| Rad23p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 398
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 61/206 (29%), Positives = 103/206 (50%), Gaps = 27/206 (13%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPC--GQQLLIHNGKVLKDETT 58
+ LT K K + ++PS+T++ K + + C Q LI++GKVL+D T
Sbjct: 2 VSLTFKNFKKEKVPLDLEPSNTILETKTKL-----AQSISCEESQIKLIYSGKVLQDSKT 56
Query: 59 LADNKVSEDGFLVVMLSKSKTLGSAGASSAQPAHTTPPTTAPSSNSTPPQEASVPPPAPT 118
+++ + + +V M+S+ K+ + T P AP S +TP +E S +P+
Sbjct: 57 VSECGLKDGDQVVFMVSQKKSTKT---------KVTEPPIAPESATTPGRENSTEA-SPS 106
Query: 119 PSIPASNVTSNVTAANANSD-------TYGQAASNLVAGNDLEQTIQQIMDMGGGTWDKE 171
A+ + + + T + V G + +TI++IM+MG + +E
Sbjct: 107 TDASAAPAATAPEGSQPQEEQTATTERTESASTPGFVVGTERNETIERIMEMG---YQRE 163
Query: 172 TVTRALQAAYNNPERAVDYLYSGIPE 197
V RAL+AA+NNP+RAV+YL GIPE
Sbjct: 164 EVERALRAAFNNPDRAVEYLLMGIPE 189
>gi|410079523|ref|XP_003957342.1| hypothetical protein KAFR_0E00530 [Kazachstania africana CBS 2517]
gi|372463928|emb|CCF58207.1| hypothetical protein KAFR_0E00530 [Kazachstania africana CBS 2517]
Length = 379
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 60/197 (30%), Positives = 99/197 (50%), Gaps = 18/197 (9%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M + K K + ++ S T++ K + ++ D Q LI +GKVLKD+ T++
Sbjct: 1 MNIIFKDFKKEKIPVELESSSTILDAKNKLASIKSCD---IDQIKLIFSGKVLKDDQTVS 57
Query: 61 DNKVSEDGFLVVMLSKSKTLGSAGASSAQPAHTTPPTTAPSSNSTPPQEASVPPPAPTPS 120
+ ++ +++M+SK K SA T PP S P QE P PS
Sbjct: 58 SCGLKDNDQVIMMISKKKATPSATKV------TEPPQ---QSEEQPVQE---PSQEQEPS 105
Query: 121 IPASNVTSNVTAANANSDTYGQAASNLVAGNDLEQTIQQIMDMGGGTWDKETVTRALQAA 180
+ AA ++ + V G++ +T+++IM+MG ++++ V RAL+AA
Sbjct: 106 GTTAEPAPIAPAAPVAAEPESTSTPGFVTGSERNETVERIMEMG---YERDQVERALRAA 162
Query: 181 YNNPERAVDYLYSGIPE 197
+NNP+RAV+YL GIPE
Sbjct: 163 FNNPDRAVEYLLMGIPE 179
>gi|4261672|gb|AAD13972.1|S65964_1111 Unknown [Saccharomyces cerevisiae]
gi|347495|gb|AAA34935.1| UV excision repair protein [Saccharomyces cerevisiae]
gi|347499|gb|AAA34938.1| UV excision repair protein [Saccharomyces cerevisiae]
gi|430824|gb|AAB28441.1| RAD23 [Saccharomyces cerevisiae]
Length = 398
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 61/206 (29%), Positives = 103/206 (50%), Gaps = 27/206 (13%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPC--GQQLLIHNGKVLKDETT 58
+ LT K K + ++PS+T++ K + + C Q LI++GKVL+D T
Sbjct: 2 VSLTFKNFKKEKVPLDLEPSNTILETKTKL-----AQSISCEESQIKLIYSGKVLQDSKT 56
Query: 59 LADNKVSEDGFLVVMLSKSKTLGSAGASSAQPAHTTPPTTAPSSNSTPPQEASVPPPAPT 118
+++ + + +V M+S+ K+ + T P AP S +TP +E S +P+
Sbjct: 57 VSECGLKDGDQVVFMVSQKKSTKT---------KVTEPPIAPESATTPGRENSTEA-SPS 106
Query: 119 PSIPASNVTSNVTAANANSD-------TYGQAASNLVAGNDLEQTIQQIMDMGGGTWDKE 171
A+ + + + T + V G + +TI++IM+MG + +E
Sbjct: 107 TDASAAPAATAPEGSQPQEEQTATTERTESASTPGFVVGTERNETIERIMEMG---YQRE 163
Query: 172 TVTRALQAAYNNPERAVDYLYSGIPE 197
V RAL+AA+NNP+RAV+YL GIPE
Sbjct: 164 EVERALRAAFNNPDRAVEYLLMGIPE 189
>gi|452846190|gb|EME48123.1| hypothetical protein DOTSEDRAFT_69906 [Dothistroma septosporum
NZE10]
Length = 402
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 64/200 (32%), Positives = 102/200 (51%), Gaps = 13/200 (6%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
MKLT K LK F I +PS+ + VK+ I +G + Q LI++GK+L+D+ T+
Sbjct: 1 MKLTFKDLKQQKFTIEAEPSEKIGQVKEKISAEKG---WEPSTQKLIYSGKILQDDNTIE 57
Query: 61 DNKVSEDGFLVVMLSKSKTLGSAGASSAQPAHTTPPTTAPSSNSTPPQEASVPPPAPTPS 120
K+ E GF+V M SK K A+ ++PA + P S+ + P + + +
Sbjct: 58 SYKIEEKGFIVCMTSKPK------AAPSKPAEPSTPAKPVSTPAAPAAPQAAQSTSASQP 111
Query: 121 IPASNVTSNVTAANANSDTYGQAASNLVAGNDLEQTIQQIMDMGGGTWDKETVTRALQAA 180
+ TAA + S + S L G EQ I M + ++ + RA++AA
Sbjct: 112 PATPSPAPASTAATSESGNFND-PSALALG---EQRTAAIAGMEAMGFARDQIDRAMRAA 167
Query: 181 YNNPERAVDYLYSGIPETAE 200
+ NP+RAV+YL +GIP +A+
Sbjct: 168 FFNPDRAVEYLLNGIPASAQ 187
>gi|346324523|gb|EGX94120.1| UV excision repair protein (RadW), putative [Cordyceps militaris
CM01]
Length = 1066
Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 62/197 (31%), Positives = 101/197 (51%), Gaps = 24/197 (12%)
Query: 8 LKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSED 67
LK F + V+P+D + AVK+ I +G D Q LI++GK+LKDE T+A + E
Sbjct: 693 LKQQKFTLEVEPADLISAVKEKISAEKGWDP---KHQKLIYSGKILKDEETVASYNIEEK 749
Query: 68 GFLVVMLSKSKTLGSAGASSAQPAH-------TTPPTTAPSSNSTPPQEASVPPPAPTPS 120
GF+V M++K K +A A SA T+ P + N + +++ PP P+P+
Sbjct: 750 GFVVCMVNKPKEKPAAAAPSAVAPPATPAQPVTSTPAVPAAPNQSSANQSTAPPVTPSPN 809
Query: 121 IPASNVTSNVTAANANSDTYGQAASNLVAGNDLEQTIQQIMDMGGGTWDKETVTRALQAA 180
+ + G A+ L G + I + MG +++ + A++AA
Sbjct: 810 -----------RSADAAAPTGADAAGLTMGAERAAAITSMEAMG---FERSQIEAAMRAA 855
Query: 181 YNNPERAVDYLYSGIPE 197
+NNP+RAV+YL +GIP+
Sbjct: 856 FNNPDRAVEYLLTGIPD 872
>gi|401626135|gb|EJS44097.1| rad23p [Saccharomyces arboricola H-6]
Length = 401
Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 58/206 (28%), Positives = 105/206 (50%), Gaps = 24/206 (11%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
+ LT K K + ++PS+T+ K + + Q LI++GKVL+D T++
Sbjct: 2 VSLTFKNFKKEKVPLDLEPSNTIFEAKTKLAQTASCEE---SQIKLIYSGKVLQDSKTVS 58
Query: 61 DNKVSEDGFLVVMLSKSKTLGSAGASSAQPAHTTPPTTAPSSNST--PPQEASVPPPAPT 118
+ + + +V M+S+ ++ + T P AP + +T P ++ S P + +
Sbjct: 59 ECGLKDGDQVVFMISQKRSTKT---------KVTEPPIAPETAATTNPVRDDSTEPASTS 109
Query: 119 PSIPASNVTSNVTAAN------ANSDTYGQAAS-NLVAGNDLEQTIQQIMDMGGGTWDKE 171
P + ++ + + ++ G A++ V G +TI++IM+MG + +E
Sbjct: 110 TDAPTAETSTAAEGSQPQEEQTSTTEPAGSASTPGFVVGTQRNETIERIMEMG---YPRE 166
Query: 172 TVTRALQAAYNNPERAVDYLYSGIPE 197
V RAL+AA+NNP+RAV+YL GIPE
Sbjct: 167 EVERALRAAFNNPDRAVEYLLMGIPE 192
>gi|83033008|ref|XP_729289.1| DNA repair protein RAD23 [Plasmodium yoelii yoelii 17XNL]
gi|23486634|gb|EAA20854.1| putative DNA repair protein RAD23 [Plasmodium yoelii yoelii]
Length = 368
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 60/214 (28%), Positives = 105/214 (49%), Gaps = 24/214 (11%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYP---CGQQLLIHNGKVLKDET 57
MK+ V+TL+ + EI V +DT++ +KK IE+V +P C +Q LI +G +L DE
Sbjct: 1 MKIKVRTLQNTEEEINVDNNDTILDLKKKIENV-----FPEMACDKQKLIFSGNILIDED 55
Query: 58 TLADNKVSEDGFLVVMLSKSKTLGSAGASSAQPAHTTPPTTAPSSNSTPPQEASVPPPAP 117
D + E+ ++VM+++ K + + +S + A+ SS+S ++
Sbjct: 56 KAVD-ILKENDIVIVMVTR-KIITNKKNNSTKNAN-----ELASSDSLKNKDEKNSDDKN 108
Query: 118 TPSIPASNVTSNVTAANANSDTYGQAASNLVAGNDLEQTIQQIMDMGGGTWDKETVTRAL 177
T N N ++ S L+ G+ L++TI I MG +++E V +A+
Sbjct: 109 NDK------TKNTDTENKGNENISNPESILLTGDKLKETIDNICAMG---FERELVQKAM 159
Query: 178 QAAYNNPERAVDYLYSGIPETAEVAVPVAHFPAS 211
AYNNP A+DYL +G + + ++ S
Sbjct: 160 TLAYNNPNVAIDYLTNGFQDIIDDGHDISEMKDS 193
>gi|50309879|ref|XP_454953.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|49644088|emb|CAH00040.1| KLLA0E22133p [Kluyveromyces lactis]
Length = 383
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 72/234 (30%), Positives = 106/234 (45%), Gaps = 26/234 (11%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M + K K I + T+ K+ I + + D Q LI+ GK+L+D T++
Sbjct: 1 MLINFKDFKKEKLPIELADDATISHAKELIAEQKQCD---ASQIKLIYAGKILQDPKTVS 57
Query: 61 DNKVSEDGFLVVMLSKSKTLGSAGASSAQPAHTTPPTTAPSSNSTPPQEASVPPPAPTPS 120
+ E ++ M+SK+K T TT P S A A P+
Sbjct: 58 GCNLKEGDQVIFMISKTKKKADV--------KVTESTTEPQDESQATASAETSAVANAPA 109
Query: 121 IPASNVTSNVTAANANSDTYGQAASNLVAGNDLEQTIQQIMDMGGGTWDKETVTRALQAA 180
+ T T A + G ++ V G+ +T+ +IM+MG +D+E V RAL+AA
Sbjct: 110 EATTTGTRTGTTAVTQEE--GTTDASFVTGSQRNETVNRIMEMG---YDREQVERALRAA 164
Query: 181 YNNPERAVDYLYSGIPETAEVAVPVAHFPASQAAE--TGAAGAAPVSGVPNSSP 232
+NNP+RAV+YL GIPE +E P+ Q AE T AGA S V P
Sbjct: 165 FNNPDRAVEYLLMGIPEASE--------PSQQQAEAVTSEAGANANSEVATDVP 210
>gi|302417214|ref|XP_003006438.1| nucleotide excision repair protein RAD23 [Verticillium albo-atrum
VaMs.102]
gi|261354040|gb|EEY16468.1| nucleotide excision repair protein RAD23 [Verticillium albo-atrum
VaMs.102]
Length = 394
Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 63/200 (31%), Positives = 104/200 (52%), Gaps = 13/200 (6%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
MK+T K LK + F + V+P+D + VK+ I + +G D +Q LI++GK+LKDE T+
Sbjct: 1 MKVTFKDLKQNKFTLEVEPTDLISTVKQRISEEKGWD---AKEQKLIYSGKILKDEETVE 57
Query: 61 DNKVSEDGFLVVMLSKSKTLGSAGASSAQPAHTTPPTTAPSSNSTPPQEASVPPPAPTPS 120
K+ E GF+V M+ K K +A A+S+ +T P ++ P A PS
Sbjct: 58 SYKIEEKGFVVCMIQKPKAKPAAPAASSSAVPST-PAQPVAATPAVPAAPQASTQAAVPS 116
Query: 121 IPASNVTSNVTAANANSDTYGQAASNLVAGNDLEQTIQQIMDMGGGTWDKETVTRALQAA 180
P + A +D ++ G + + + MG +++ + AL+AA
Sbjct: 117 TPTPAARAGAGGDGAPTD------PSMAMGAQRAEVVANMEAMG---FERSQIDAALRAA 167
Query: 181 YNNPERAVDYLYSGIPETAE 200
+ NP+RAV+YL +GIP+ A+
Sbjct: 168 FYNPDRAVEYLLTGIPDDAQ 187
>gi|355715047|gb|AES05207.1| RAD23-like protein A [Mustela putorius furo]
Length = 182
Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 50/117 (42%), Positives = 72/117 (61%), Gaps = 9/117 (7%)
Query: 3 LTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADN 62
+T+KTL+ F+IR++P +TV +K+ IE +G+D +P Q LI+ GK+L D+ + D
Sbjct: 22 ITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDY 81
Query: 63 KVSEDGFLVVMLSKSKTLGSAGASSAQPAHTTPPTTAP-SSNSTPPQEA---SVPPP 115
++ E F+VVM++K+KT S G S A PT AP SS S PP A S PPP
Sbjct: 82 RIDEKNFVVVMVTKAKT--SPGTSVPPEAS---PTAAPESSTSFPPAPASGMSHPPP 133
>gi|47206809|emb|CAG13273.1| unnamed protein product [Tetraodon nigroviridis]
Length = 366
Score = 81.6 bits (200), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 86/282 (30%), Positives = 134/282 (47%), Gaps = 49/282 (17%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M +T+KTL+ F+I + +TV +K+ IE+ +GKD++P LI+ GK+L D+ L
Sbjct: 1 MLITLKTLQQQTFKIEIDEEETVKRLKEKIEEEKGKDHFPVSGLKLIYAGKILSDDKPLK 60
Query: 61 DNKVSEDGFLVVMLSKSKTLGSAGASSAQPAHTTPPTTAPSSNSTPPQEASVPPPAPTPS 120
+ K+S+ F+VVM + +A + T PP P + PPP P P
Sbjct: 61 EYKISDKNFVVVM-ATKPKTAAAAPQPSAAGTTAPPALDPGPDPCRRHRLRPPPPPPRPE 119
Query: 121 IPASNVTSNVTA------------ANANSDTYGQAASNLVAGNDLEQTIQQIMDMGGGTW 168
S V ++TA ++ ++ +A SNLV G E + +IM MG +
Sbjct: 120 NRCSIVFIDLTAPPPPLPPSRGSEGSSGTNLIDEAVSNLVTGPSYESMVNEIMLMG---Y 176
Query: 169 DKETVTRALQAAYNNPERAVDYLYSGIPETAEVAVPVAHFPASQAAETGAAGAAPVSGVP 228
++E V AL+A++NNP+RAV+YL + A P A + +A AG
Sbjct: 177 EREQVVAALRASFNNPDRAVEYLLTA-------AGPAAEATPASSAPAAPAG-------- 221
Query: 229 NSSPLNMFPQETLSGAPAG--GLGSLDFLRNN---QQVWSLL 265
+G+PAG G+ L FLRN QQ+ L+
Sbjct: 222 -------------TGSPAGAEGVNPLSFLRNQPQFQQMRQLI 250
>gi|449676312|ref|XP_002169219.2| PREDICTED: UV excision repair protein RAD23 homolog B-like [Hydra
magnipapillata]
Length = 343
Score = 81.6 bits (200), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 65/204 (31%), Positives = 107/204 (52%), Gaps = 10/204 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M +T+KTL+ F+I V +D V A+K+ I +G + +P Q LI++GK+L D+ L
Sbjct: 1 MLITLKTLQQKTFKIEVDENDKVFALKELIAKEKGSE-FPIECQRLIYSGKILDDDKALC 59
Query: 61 DNKVS-EDGFLVVMLSKSKTLGSAGASSAQPAHTTPPTTAPSSNSTPPQEASVPPPAPTP 119
+ + F+VVM K K + G S+ +TP + S T Q +S P T
Sbjct: 60 EYNIDPVKNFVVVMSVKPKVVTKDGDKSSGVGSSTPQVESTVSMETV-QPSSTPLLTSTA 118
Query: 120 SIPASNVTSNVTAANANSDTYGQAASNLVAGNDLEQTIQQIMDMGGGTWDKETVTRALQA 179
S + S + A ++ G ++ + G+ L+ +I ++M +G + +E V RALQ
Sbjct: 119 SASETTSVSTTSTAVSSQPDIG---TSFLTGSALDSSINELMSLG---FSREQVLRALQR 172
Query: 180 AYNNPERAVDYLYSG-IPETAEVA 202
++ N +RA +YL SG +PE E A
Sbjct: 173 SFQNADRAAEYLLSGNVPELVEDA 196
>gi|71033501|ref|XP_766392.1| DNA repair protein Rad23 [Theileria parva strain Muguga]
gi|68353349|gb|EAN34109.1| DNA repair protein rad23, putative [Theileria parva]
Length = 326
Score = 81.6 bits (200), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 86/251 (34%), Positives = 127/251 (50%), Gaps = 50/251 (19%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGK--DNYPCGQQ---LLIHNGKVLKD 55
M L VKTLK ++ V DT ++ED+ K +++P Q LIH GK+LK
Sbjct: 1 MNLKVKTLKNVQVDVDV--PDTA-----SVEDLMNKVAESFPNMQAESLKLIHAGKILKK 53
Query: 56 ETTLADNKVSEDGFLVVMLSKSKTLGSAGASSAQPAHTTPPTTAPSSNSTPPQEASVPPP 115
E L D +DG V+++S SKT P+ P + PSS +TP +A P P
Sbjct: 54 ELLLKDYSDIKDGDKVIVIS-SKT--------PDPSKHQDPNSQPSSTTTPTSKA--PQP 102
Query: 116 AP---TPSIPASNVTSNVTAANANSDTYGQAASNLVAGNDLEQTIQQIMDMGGGTWDKET 172
+P +P P+S N + TY +S LV G++LEQ+I +I +MG +++
Sbjct: 103 SPLDNSPHQPSS-------GHNVSQQTYETVSSKLVMGSELEQSINRICEMG---FERPL 152
Query: 173 VTRALQAAYNNPERAVDYLYSGIPETAEVAVPVAHFPASQ-----AAETGAAGAAPVSGV 227
V RA+ AA+NNP+RAV++L +G +PV++ P A E G +G V +
Sbjct: 153 VERAMAAAFNNPDRAVEFLSTG-------NIPVSNMPNIDHQNVTAPEHGHSGGEDVLQM 205
Query: 228 PNSSPLNMFPQ 238
S P MF Q
Sbjct: 206 IQSHP--MFEQ 214
>gi|391330987|ref|XP_003739932.1| PREDICTED: UV excision repair protein RAD23 homolog B-like
[Metaseiulus occidentalis]
Length = 336
Score = 81.6 bits (200), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 57/196 (29%), Positives = 99/196 (50%), Gaps = 13/196 (6%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
+ + VK L F I + TV +K+ I +++G +P Q LI G+++ D+ +
Sbjct: 3 LTVNVKCLTNELFTIEIDDDCTVKDMKEKISEIKGA-AFPAVHQKLIAQGRIMADQDKVK 61
Query: 61 DNKVSEDGFLVVMLSKSKTLGSAGASSAQPAHTTPPTTAPSSNSTPPQEASVPPPAPTPS 120
+ F+V+M+SK T GA+S + +P ++ P A TP+
Sbjct: 62 TYDLKSVKFVVIMVSKPATGAQPGAASTEQPAAPAAAAEAKPVESPEEK---PKEAGTPT 118
Query: 121 IPASNVTSNVTAANANSDTYGQAASNLVAGNDLEQTIQQIMDMGGGTWDKETVTRALQAA 180
+ T+ T ++A ++ S LV G +Q ++ I +MG + ++ V RAL+A+
Sbjct: 119 ATRPSTTTPSTDSSAGNE------STLVVGEQYKQMVESITEMG---YPQDQVERALRAS 169
Query: 181 YNNPERAVDYLYSGIP 196
YNNP+RAV+YL +G P
Sbjct: 170 YNNPDRAVEYLVTGFP 185
>gi|340384331|ref|XP_003390667.1| PREDICTED: UV excision repair protein RAD23 homolog B-like
[Amphimedon queenslandica]
Length = 363
Score = 81.6 bits (200), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 61/191 (31%), Positives = 96/191 (50%), Gaps = 41/191 (21%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M +TVKTL+ F+I ++ S +V+ +KK IE QG + +P Q LI++GK+L D L+
Sbjct: 1 MIITVKTLQQKTFKIEIEESASVLDLKKAIEANQG-EAFPAAGQKLIYSGKILNDSQPLS 59
Query: 61 DNKVSEDGFLVVMLSKSKTLGSAGASSAQPAHTTPPTTAPSSNSTPPQEASVPPPAPTPS 120
D + E F+VVM+SK K + + + T+ +T +S +TP
Sbjct: 60 DYSIQESNFVVVMVSKIKPAPAPTPKPQETSSTSSSSTPSTSGATP-------------- 105
Query: 121 IPASNVTSNVTAANANSDTYGQAASNLVAGNDLEQTIQQIMDMGGGTWDKETVTRALQAA 180
P+S + G D E+T+ ++ MG + + V RALQA+
Sbjct: 106 QPSS-----------------------ITGTDYERTVNDMVGMG---FMRNDVVRALQAS 139
Query: 181 YNNPERAVDYL 191
YNNP RA++YL
Sbjct: 140 YNNPTRAMEYL 150
>gi|255943815|ref|XP_002562675.1| Pc20g01150 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211587410|emb|CAP85444.1| Pc20g01150 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 380
Score = 81.3 bits (199), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 68/197 (34%), Positives = 99/197 (50%), Gaps = 8/197 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
MKLT K LK F I V+PS+TV VK I Q K Y + +I++GK+L+D+ T+
Sbjct: 1 MKLTFKDLKQEKFVIDVEPSETVREVKVKI--AQEKGEYEAERMKVIYSGKILQDDKTVE 58
Query: 61 DNKVSEDGFLVVMLSKSKTLGSAGASSAQPAHTTPPTTAPSSNSTPPQEASVPPPAPTPS 120
+ E FLV + SK ++ ASS P +TP AP S P P
Sbjct: 59 SYNIQEKDFLVCLPSKQPKAAASTASSQVP--STPAARAPVSTPAAPPAPHAAAAPPPSV 116
Query: 121 IPASNVTSNVTAANANSDTYGQAASNLVAGNDLEQTIQQIMDMGGGTWDKETVTRALQAA 180
PA+ + A ++ +G S L G E + Q+ MG D + RA++AA
Sbjct: 117 APATPSPAGAAPAPSSGPAFGD-PSALTMGPAAEGAVVQMEAMGFARTD---IDRAMRAA 172
Query: 181 YNNPERAVDYLYSGIPE 197
+ NP+RA++YL +GIP+
Sbjct: 173 FYNPDRAIEYLLTGIPD 189
>gi|367027912|ref|XP_003663240.1| hypothetical protein MYCTH_80581 [Myceliophthora thermophila ATCC
42464]
gi|347010509|gb|AEO57995.1| hypothetical protein MYCTH_80581 [Myceliophthora thermophila ATCC
42464]
Length = 377
Score = 81.3 bits (199), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 69/197 (35%), Positives = 110/197 (55%), Gaps = 10/197 (5%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
MK+T K LK F + V+P+D + AVK+ I + +G D P Q+L I++GK+LKDE T+
Sbjct: 1 MKVTFKDLKQQKFVLDVEPTDLISAVKQRISEERGWD--PKHQKL-IYSGKILKDEDTVE 57
Query: 61 DNKVSEDGFLVVMLSKSKTLGSAGASSAQPAHTTPPTTAPSSNSTPPQEASVPPPAPTPS 120
K+ E GF+V +++K K ++ + P T AP+ +STP A+ + T +
Sbjct: 58 SYKIEEKGFVVCVVNKPKE-PKPAPAAESSSSAAPATPAPAQSSTPAAPAAPVQASSTAT 116
Query: 121 IPASNVTSNVTAANANSDTYGQAASNLVAGNDLEQTIQQIMDMGGGTWDKETVTRALQAA 180
+ T N +AA A T + L G EQ + I +M +++ + A++AA
Sbjct: 117 AAPATPTPNRSAAPA---TLATDPNQLAMG---EQRAEAIANMEAMGFERSQIDAAMRAA 170
Query: 181 YNNPERAVDYLYSGIPE 197
+ NP+RAV+YL +GIPE
Sbjct: 171 FFNPDRAVEYLLNGIPE 187
>gi|299751880|ref|XP_002911697.1| hypothetical protein CC1G_06820 [Coprinopsis cinerea okayama7#130]
gi|298409576|gb|EFI28203.1| hypothetical protein CC1G_06820 [Coprinopsis cinerea okayama7#130]
Length = 377
Score = 80.9 bits (198), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 67/200 (33%), Positives = 108/200 (54%), Gaps = 9/200 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
+K+TVKT + + V+ +DT+ VK+ I D G +P Q +I++GK+L D+ T+
Sbjct: 2 VKITVKTTQQKVHHVEVELTDTIGTVKQKISDEHG---HPVAAQKIIYSGKILPDDKTIE 58
Query: 61 DNKVSEDGFLVVMLSKSKTLGSAGASSAQPAHTTPPTTAPSSNSTPPQEASVPPPAPTPS 120
+ E F V+M+SK K +A S+ T P A + + P A P P+P
Sbjct: 59 SCALKEKDFFVLMVSKPKATPAASTSTTPAPATPAPAAAAPATAPTPAAAPAPAPSPAAP 118
Query: 121 IPASNVTSNVTAANANSDTYGQAASNLVAGNDLEQTIQQIMDMGGGTWDKETVTRALQAA 180
PA+ + TAA A G + ++G + +Q +++MG + +E V RA++A+
Sbjct: 119 APAAAPSEATTAAPAQE---GFGTGSFLSGAAYQNAVQNLVEMG---FPQEQVVRAMRAS 172
Query: 181 YNNPERAVDYLYSGIPETAE 200
+NNP+RAVDYL +GIP E
Sbjct: 173 FNNPDRAVDYLMNGIPAHLE 192
>gi|330803429|ref|XP_003289709.1| hypothetical protein DICPUDRAFT_48776 [Dictyostelium purpureum]
gi|325080219|gb|EGC33784.1| hypothetical protein DICPUDRAFT_48776 [Dictyostelium purpureum]
Length = 349
Score = 80.9 bits (198), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 69/215 (32%), Positives = 112/215 (52%), Gaps = 29/215 (13%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
MKLT+K + + + TV+ +K +I + K N Q LI++GK+L+D+ TL
Sbjct: 1 MKLTIKNINKEVYSFELDSDKTVLDLKNSIFE---KYNQIPSWQTLIYSGKILEDKNTLE 57
Query: 61 DNKVSEDGFLVVMLSKSK---------------TLGSAGASSAQPAHTTPPTTAPSSNST 105
K+SE GF+V+M+ K + + S +++QPA+T T+AP +
Sbjct: 58 SYKISEQGFIVMMIKKPREAPATATTTSPSESTSSPSNSTTTSQPANT---TSAPVTTPN 114
Query: 106 PPQEASVPPPAPTPSIPASNVTSNVTAANANSDTYGQAASNLVAGNDLEQTIQQIMDMGG 165
+ P P ++ T T ++ S + ++++ V G +LE TI+ I+DMG
Sbjct: 115 ----PTPARPTTPNPTPTTSSTPGTTPSSNTSPSQNTSSTDFVTGTELENTIKNIVDMG- 169
Query: 166 GTWDKETVTRALQAAYNNPERAVDYLYSG-IPETA 199
+ +E V RAL+ YNN +RAV+ L SG IPE A
Sbjct: 170 --FQREQVIRALRLGYNNADRAVELLLSGSIPENA 202
>gi|389633979|ref|XP_003714642.1| UV excision repair protein Rad23 [Magnaporthe oryzae 70-15]
gi|351646975|gb|EHA54835.1| UV excision repair protein Rad23 [Magnaporthe oryzae 70-15]
gi|440474553|gb|ELQ43290.1| hypothetical protein OOU_Y34scaffold00162g59 [Magnaporthe oryzae
Y34]
gi|440479744|gb|ELQ60492.1| hypothetical protein OOW_P131scaffold01287g24 [Magnaporthe oryzae
P131]
Length = 401
Score = 80.9 bits (198), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 72/218 (33%), Positives = 111/218 (50%), Gaps = 20/218 (9%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
MK+T K LK F I V+P+D + AVK+ I + +G D P Q+L I++GK+LKDE T+
Sbjct: 1 MKVTFKDLKQQKFVIEVEPTDLISAVKQKISEERGWD--PKLQKL-IYSGKILKDEETVE 57
Query: 61 DNKVSEDGFLVVMLSKSK----TLGSAGASSAQPAHTTPPTTAPSSNSTPPQEASVPPPA 116
K+ E GF+V +++K K + +A +++ P P++ P Q +S P
Sbjct: 58 SYKIEEKGFVVCVVNKPKAAPASAAAASSNAPPATPAAAPAATPAAPPAPAQTSSSEPAV 117
Query: 117 PTPSIPASNVTSNVTAANANSDTYGQAASNLVAGNDLEQTIQQIMDMGGGTWDKETVTRA 176
P P AN N L G ++ I + MG +++ + A
Sbjct: 118 PATPTP-QRAGEAPGGANFNDPNM------LSTGAARDEAIANMEAMG---FERTQIDAA 167
Query: 177 LQAAYNNPERAVDYLYSGIPETAEVAVPVAHFPASQAA 214
++AAY NP+RAV+YL +GIPE A PA++AA
Sbjct: 168 MRAAYFNPDRAVEYLLNGIPENLRQAT---QPPAARAA 202
>gi|327292408|ref|XP_003230903.1| UV excision repair protein Rad2 [Trichophyton rubrum CBS 118892]
gi|326466939|gb|EGD92392.1| UV excision repair protein Rad2 [Trichophyton rubrum CBS 118892]
Length = 365
Score = 80.9 bits (198), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 82/250 (32%), Positives = 118/250 (47%), Gaps = 34/250 (13%)
Query: 31 EDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVMLSKSKTLGSAGASSAQP 90
E + + +P QQ LI++GK+L+D+ T+ + E GF+V M+SK K SA A+S+
Sbjct: 13 EKIATEKGWPASQQKLIYSGKILQDDNTVESYNIEEKGFIVCMVSKPKAAPSASAASSSQ 72
Query: 91 AHTTPPTTAPSSNSTPPQEASVPPPAPTPSIPASNVTSNVTAANANSDTYGQAASNLVAG 150
P+ + P AS P + TP+ P+ A A+S S L+ G
Sbjct: 73 TPAAAPSAPAPITPSAPTRASA-PASETPATPS-------PAGGASSGATFNDPSALLMG 124
Query: 151 NDLEQTIQQIMDMGGGTWDKETVTRALQAAYNNPERAVDYLYSGIPETAEVAVPVAHFPA 210
N ++ I Q++ MG D + RA++AAY NP+RA++YL +GIPE +E P A A
Sbjct: 125 NQGQEAITQMLAMGFSRGD---IDRAMRAAYFNPDRAIEYLLNGIPEESEREAPSAPAAA 181
Query: 211 SQAAETGAAGAAPVSGVPNSSPLNMFPQ----------------------ETLSGAPAGG 248
AA P S LN+F Q +G AG
Sbjct: 182 GGAARPSTTSEEPSDAQVQES-LNLFEQAAAQASGGGGARGRGAGAGAGAGAGAGETAGS 240
Query: 249 LGSLDFLRNN 258
LGSL+FLRNN
Sbjct: 241 LGSLEFLRNN 250
>gi|440796341|gb|ELR17450.1| Rad23, putative [Acanthamoeba castellanii str. Neff]
Length = 393
Score = 80.9 bits (198), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 63/197 (31%), Positives = 100/197 (50%), Gaps = 17/197 (8%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
+K+ +KT++ FE+ V + TV+ VKK +E ++ ++ Q LI GK+L D+ +
Sbjct: 2 LKVQIKTIQQQQFEVEVPDTATVLDVKKKVEALRSEN---VAWQKLIFAGKILADDAKIN 58
Query: 61 DNKVSEDGFLVVMLSKSKTLGSAGASSAQPAHTTPPTTAPSSNSTPPQEASVPPPAPTPS 120
+ FLV+M+ K K A+ P A + APTP+
Sbjct: 59 TLNIKPTEFLVLMVRKPKE-----------ANVAAPAPAAQPAAAATPAQPTQTAAPTPA 107
Query: 121 IPASNVTSNVTAANANSDTYGQAASNLVAGNDLEQTIQQIMDMGGGTWDKETVTRALQAA 180
PA+ ++ +AAS LV G+D E + IM+MG + +E V RAL+A+
Sbjct: 108 TPAAAEPPRPAQPSSGGSIESEAASALVTGSDFEAMVSNIMEMG---FPREEVLRALRAS 164
Query: 181 YNNPERAVDYLYSGIPE 197
+NNP RAV+YL +GIP+
Sbjct: 165 FNNPNRAVEYLMTGIPD 181
>gi|134107453|ref|XP_777611.1| hypothetical protein CNBA7320 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50260305|gb|EAL22964.1| hypothetical protein CNBA7320 [Cryptococcus neoformans var.
neoformans B-3501A]
Length = 404
Score = 80.9 bits (198), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 61/194 (31%), Positives = 102/194 (52%), Gaps = 6/194 (3%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
+K+T KT++ F + Q SDTV +KK I++ Q +P Q LI++GK+L D +++
Sbjct: 2 VKITFKTVQNKLFTVDAQDSDTVADLKKKIQETQ---TFPVENQKLIYSGKILNDASSVE 58
Query: 61 DNKVSEDGFLVVMLSKSKTLGSAGASSAQPAHTTPPTTAPSSNSTPPQEASVPPPAPTPS 120
K+ E FLVVM+S++ + A + T P A S ++ A P AP
Sbjct: 59 SLKIKEKDFLVVMVSRATPAATPAAPATPAPSTPAPAPAASEQASVANPAVPAPSAPAAE 118
Query: 121 IPASNVTSNVTAANANSDTYGQAASNLVAGNDLEQTIQQIMDMGGGTWDKETVTRALQAA 180
++ + + S + V G L+ I +++MG ++++ V RAL+A+
Sbjct: 119 SAPASAPAPAAESAQPSAVESGLGGSFVTGPALQAAIDGMVEMG---FERDQVIRALRAS 175
Query: 181 YNNPERAVDYLYSG 194
+NNP+RAV+YL SG
Sbjct: 176 FNNPDRAVEYLMSG 189
>gi|320586564|gb|EFW99234.1| uv excision repair protein [Grosmannia clavigera kw1407]
Length = 400
Score = 80.5 bits (197), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 70/213 (32%), Positives = 109/213 (51%), Gaps = 33/213 (15%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
MK+T K LK F I ++PS+T+ AVK+ I D +G + Q LI++GK+LKDE T+
Sbjct: 1 MKVTFKDLKQQKFVIEIEPSETIAAVKQKISDERG---WAPKTQKLIYSGKILKDEDTVE 57
Query: 61 DNKVSEDGFLVVMLSKSK--------------TLGSAGASSAQPAHTTPPTTAPSSNSTP 106
K+ E GF+V +++K K T A A +A PA A S+
Sbjct: 58 SYKIEEKGFVVCVVNKPKPAPVAESSSAASPSTPARASAVAATPAAPAAAAAASSAAIAQ 117
Query: 107 PQEASVPPPAPTPSIPASNVTSNVTAANANSDTYGQAASNLVAGNDLEQTIQQIMDMGGG 166
A+ P PA + P + ++ T N+ S G L++ I + MG
Sbjct: 118 AAVAATPSPAARAAGPTAGGATSYTDPNSFS-----------VGPALQEAITNMEAMG-- 164
Query: 167 TWDKETVTRALQAAYNNPERAVDYLYS--GIPE 197
+++ ++ A++AAYNNP+RAV+YL + GIP+
Sbjct: 165 -FERSQISAAMRAAYNNPDRAVEYLLTLQGIPD 196
>gi|449017046|dbj|BAM80448.1| nucleotide excision repair protein yeast rad23/ human HHR23A
homolog [Cyanidioschyzon merolae strain 10D]
Length = 430
Score = 80.5 bits (197), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 71/224 (31%), Positives = 111/224 (49%), Gaps = 30/224 (13%)
Query: 1 MKLTVKTLKGSHFEIR-VQPSDTVMAVKKNIEDVQGKDNY---PCGQQ--LLIHNGKVLK 54
M+LT KTL + + + P TV +K+ ++ G++ + P Q LI G+VL
Sbjct: 1 MRLTFKTLDNKNLSLDGISPDTTVEELKR---ELGGREEFRWDPARTQEARLIFAGRVLS 57
Query: 55 DET-TLADNKVSEDGFLVVM---LSKSKTLGSAGASSAQPAHTTPPTTAPSSNSTPP--- 107
D T LAD + +D FLVVM ++ ++ +A SSA TP +S +T
Sbjct: 58 DPTQKLADCGMQDDDFLVVMPPRVATQRSRKTASVSSADAQLKTPLQAGLASEATDSATI 117
Query: 108 -QEASVPPPAPTPSIPASNVTSNVTAANAN----------SDTYGQAASNLVAGNDLEQT 156
EAS PA +P S +S T A + + T G A+S L G++
Sbjct: 118 ASEASRGIPADSPPASVSAKSSGATPAESGALSQTPQVEGTTTSGIASSGLAVGDEYSLY 177
Query: 157 IQQIMDMGGGTWDKETVTRALQAAYNNPERAVDYLYSGIPETAE 200
+ ++ DMG +D ++ RA++AA+ NPERA++YL +G P E
Sbjct: 178 MNRMRDMG---FDDGSIERAMRAAHYNPERAIEYLCNGFPANTE 218
>gi|393217532|gb|EJD03021.1| UV excision repair protein Rad23 [Fomitiporia mediterranea MF3/22]
Length = 406
Score = 80.5 bits (197), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 62/197 (31%), Positives = 111/197 (56%), Gaps = 8/197 (4%)
Query: 1 MKLTVKTLKGSHFEIR-VQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTL 59
M+LT+K L+G F+I V+ DTV ++K+ I G+ +P Q LI++GK+L+D+ +
Sbjct: 1 MELTIKNLQGKVFKISDVEEEDTVASLKQKIA---GQFQHPVELQKLIYSGKILQDDAQI 57
Query: 60 ADNKVSEDGFLVVMLSKSKTLGSAGASSAQPAHTTPPTTAPSSNSTPPQEASVPPPAPTP 119
+ + F+V+M+SK K + A+ A A P T ++ + P
Sbjct: 58 KSYNIKQTDFIVLMVSKPKAAPAPAAAPAPVAAKAPEATPATAPAPAPAAPVAATSTSAA 117
Query: 120 SIPASNVTSNVTAANANSDTYGQAASNLVAGNDLEQTIQQIMDMGGGTWDKETVTRALQA 179
S ++ T++ AA +G S ++G+ L+ +IQ +++MG +++ V RA++A
Sbjct: 118 SSTSAPATASPAAATPQERAFGDTTS-FLSGDALQASIQNMIEMG---FERAQVMRAMKA 173
Query: 180 AYNNPERAVDYLYSGIP 196
++NNP+RAV+YL +GIP
Sbjct: 174 SFNNPDRAVEYLMNGIP 190
>gi|367007439|ref|XP_003688449.1| hypothetical protein TPHA_0O00440 [Tetrapisispora phaffii CBS 4417]
gi|357526758|emb|CCE66015.1| hypothetical protein TPHA_0O00440 [Tetrapisispora phaffii CBS 4417]
Length = 369
Score = 80.5 bits (197), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 63/203 (31%), Positives = 102/203 (50%), Gaps = 30/203 (14%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
+ + K K + + S TV+ KK + + + D+ Q LI++GKVL+D ++
Sbjct: 2 VSILFKDFKKQKISLDLPASSTVLHAKKQLAEQKECDD---SQIKLIYSGKVLQDSNSIE 58
Query: 61 DNKVSEDGFLVVMLSKSKTLGSAGASSAQPAHTTPPTTAPSSNSTPPQEASVPPPAPTPS 120
+ + ++ M+SK K+ T T P T +E + P A +
Sbjct: 59 GCGLKDGDQVIFMISKKKS-------------TVTQVTEP----TESKEVAAPEVAASAP 101
Query: 121 IPASNVTSNVTAANANSDTYGQ---AASN---LVAGNDLEQTIQQIMDMGGGTWDKETVT 174
+ S T+ AA A+S T GQ ASN V G+ + + +IM+MG +++E V
Sbjct: 102 VAESTETAT-EAAPAHSTTEGQQPVTASNDPGFVVGSQRNEAVDRIMEMG---YEREEVE 157
Query: 175 RALQAAYNNPERAVDYLYSGIPE 197
RAL+AA+NNP+RAV+YL GIP+
Sbjct: 158 RALRAAFNNPDRAVEYLLMGIPD 180
>gi|194764815|ref|XP_001964524.1| GF23005 [Drosophila ananassae]
gi|190614796|gb|EDV30320.1| GF23005 [Drosophila ananassae]
Length = 318
Score = 80.1 bits (196), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 59/200 (29%), Positives = 99/200 (49%), Gaps = 27/200 (13%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
MK++++TL ++ + S V A+K+ + + + P Q LI+ G++++D L+
Sbjct: 1 MKISIRTLDQRTIKLEMSDSQDVRALKQRLGSM-PEVAIPVESQQLIYGGRIMEDALPLS 59
Query: 61 DNKVSEDGFLVVMLSKSKTLGSAGASSAQPAHTTPPTTA-PSSNSTPPQEASVPPPAPTP 119
D K++ED F+V+M K AG ++ + TPP TA PS T +PP
Sbjct: 60 DYKIAEDKFIVLMGKKMPPAKPAGTAAEENVPPTPPLTAGPSETRT----HEIPP----- 110
Query: 120 SIPASNVTSNVTAANANSDTYGQAASNLVAGNDLEQTIQQIMDMGGGTWDKETVTRALQA 179
++ A N EQ ++ +M MG G ++ V AL+A
Sbjct: 111 ------LSPAPALVMAPPPAPPSMTPN-------EQRVRDLMAMGYG---EQEVRAALRA 154
Query: 180 AYNNPERAVDYLYSGIPETA 199
++N+PERA++YL SGIP+ A
Sbjct: 155 SFNHPERAIEYLISGIPQNA 174
>gi|254569268|ref|XP_002491744.1| Protein with ubiquitin-like N terminus, recognizes and binds
damaged DNA (with Rad4p) [Komagataella pastoris GS115]
gi|238031541|emb|CAY69464.1| Protein with ubiquitin-like N terminus, recognizes and binds
damaged DNA (with Rad4p) [Komagataella pastoris GS115]
gi|328351754|emb|CCA38153.1| Probable DNA repair protein RAD23 [Komagataella pastoris CBS 7435]
Length = 338
Score = 80.1 bits (196), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 59/202 (29%), Positives = 99/202 (49%), Gaps = 39/202 (19%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
MK+ K LK + V P+DT+++ K+ + V+ D + +++GKVL+D+
Sbjct: 1 MKIVFKDLKKEKVILDVDPTDTILSAKEKLATVKNSD---ASKIKFVYSGKVLQDDKDFD 57
Query: 61 DNKVSEDGFLVVML------SKSKTLGSAGASSAQPAHTTPPTTAPSSNSTPPQEASVPP 114
KV E+ ++ ML + K L + ++ + T AP +VPP
Sbjct: 58 AFKVKENDVIIFMLPSVFKKEEPKNLENRIDKTSTESSKTTTIAAPG--------IAVPP 109
Query: 115 PAPTPSIPASNVTSNVTAANANSDTYGQAASNLVAGNDLEQTIQQIMDMGGGTWDKETVT 174
+P + T+ + N+ T+ GND E I+ IM+MG +D+ V
Sbjct: 110 ------VPVN------TSGSFNASTFA-------VGNDRENAIRNIMEMG---YDRSQVE 147
Query: 175 RALQAAYNNPERAVDYLYSGIP 196
AL+AA+NNP+RAV+YL +G+P
Sbjct: 148 AALRAAFNNPDRAVEYLLTGLP 169
>gi|259155371|ref|NP_001158747.1| UV excision repair protein RAD23 homolog B [Salmo salar]
gi|223646842|gb|ACN10179.1| UV excision repair protein RAD23 homolog B [Salmo salar]
gi|223672703|gb|ACN12533.1| UV excision repair protein RAD23 homolog B [Salmo salar]
Length = 131
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 38/89 (42%), Positives = 61/89 (68%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++T+KTL+ +I + P TV A+K+ IE +GKDN+P Q LI+ GK+L+D+T +
Sbjct: 1 MQITLKTLQQQTIQIDIDPDQTVKALKEKIEAERGKDNFPVSGQKLIYAGKILQDDTPIK 60
Query: 61 DNKVSEDGFLVVMLSKSKTLGSAGASSAQ 89
D K+ E F+VVM+SK+K+ +A S++
Sbjct: 61 DYKIDEKNFVVVMVSKAKSTTAASTPSSE 89
>gi|365991864|ref|XP_003672760.1| hypothetical protein NDAI_0L00320 [Naumovozyma dairenensis CBS 421]
gi|410729747|ref|XP_003671052.2| hypothetical protein NDAI_0G00330 [Naumovozyma dairenensis CBS 421]
gi|401779871|emb|CCD25809.2| hypothetical protein NDAI_0G00330 [Naumovozyma dairenensis CBS 421]
Length = 427
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 63/218 (28%), Positives = 109/218 (50%), Gaps = 29/218 (13%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
+ + K K + ++PS+T++ VK + + + Q +I++GKVL+D T+
Sbjct: 2 VNVIFKDFKKEKIPLDLEPSNTILDVKSQLAQAKACEE---SQIKIIYSGKVLQDGQTVE 58
Query: 61 DNKVSEDGFLVVMLSKSK------TLGSAGASSAQPAHTTPPTTAPSSNSTPPQEASVPP 114
+ ++ E ++ M+SK K T A A++ A P +SNS P
Sbjct: 59 ECQLKEGDQIIFMISKKKSTVTKVTEPPAAAAAQAQAPGANPEITTASNSATPGLIETAA 118
Query: 115 PAPTPSIPASNVTSNVTAANANSDTYGQ---------------AASNLVAGNDLEQTIQQ 159
+ TP + T N T A+A+++T +++ V G +T+++
Sbjct: 119 ASGTPE--GTPQTGNDTTASASANTATDAGAPATTTAATELSPSSAGFVTGTQRNETVER 176
Query: 160 IMDMGGGTWDKETVTRALQAAYNNPERAVDYLYSGIPE 197
IM+MG +++E V RAL+AA+NNP+RAV+YL GIPE
Sbjct: 177 IMEMG---YEREEVERALRAAFNNPDRAVEYLLMGIPE 211
>gi|301118881|ref|XP_002907168.1| UV excision repair protein RAD23 [Phytophthora infestans T30-4]
gi|262105680|gb|EEY63732.1| UV excision repair protein RAD23 [Phytophthora infestans T30-4]
Length = 449
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 40/76 (52%), Positives = 55/76 (72%), Gaps = 3/76 (3%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
MKLTVKTL+G F + + +D V AVK+ I+++Q +P QQ LIH GKVLKD++TLA
Sbjct: 1 MKLTVKTLQGVAFPLDAELTDAVSAVKQKIKELQ---KFPVSQQKLIHAGKVLKDDSTLA 57
Query: 61 DNKVSEDGFLVVMLSK 76
+ V E+ FLVVM++K
Sbjct: 58 EYNVKENDFLVVMVTK 73
>gi|146161955|ref|XP_001008308.2| UBA/TS-N domain containing protein [Tetrahymena thermophila]
gi|146146601|gb|EAR88063.2| UBA/TS-N domain containing protein [Tetrahymena thermophila SB210]
Length = 373
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 65/198 (32%), Positives = 103/198 (52%), Gaps = 27/198 (13%)
Query: 1 MKLTVKTLKGS-HFEIRVQPSDTVMAVKKNI--EDVQGKDNYPCGQQLLIHNGKVL-KDE 56
MK+ +KTLKG+ F++ ++ + TV +K+ I E + KD L+H GK L +D
Sbjct: 1 MKINIKTLKGTDFFDVNLEETATVAELKEKIATEKQKEKDTIK-----LVHKGKQLTEDS 55
Query: 57 TTLADNKVSEDGFLVVMLSKSKTLGSAGASSAQPAHTTPPTTAPSSNSTPPQEASVPPPA 116
TL + + ++ F+++M + K AQ T+ + A ++ + P +VP PA
Sbjct: 56 KTLGELGIKDNDFVILMFFQKKAEKEDAPQQAQSDTTSTTSAASTTATNP---TTVPKPA 112
Query: 117 PTPSIPASNVTSNVTAANANSDTYGQAASNLVAGNDLEQTIQQIMDMGGGTWDKETVTRA 176
V+ T S G S+L+ G +LE I++I MG +++ V +A
Sbjct: 113 ---------VSQPATTQQTGSQGTG---SDLLQGPELEAKIKEIESMG---FERPKVLQA 157
Query: 177 LQAAYNNPERAVDYLYSG 194
L+AAY NPERAVDYL SG
Sbjct: 158 LKAAYYNPERAVDYLLSG 175
>gi|401425983|ref|XP_003877476.1| UV excision repair RAD23-like protein [Leishmania mexicana
MHOM/GT/2001/U1103]
gi|322493721|emb|CBZ29011.1| UV excision repair RAD23-like protein [Leishmania mexicana
MHOM/GT/2001/U1103]
Length = 429
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 71/227 (31%), Positives = 104/227 (45%), Gaps = 50/227 (22%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
MK+ +KT+ G E+ V+ + T++ VKK +ED Y L NG VL+D LA
Sbjct: 1 MKVILKTITGKQHEVDVEATSTILDVKKLLED-----EYEPASLRLCFNGAVLEDSKMLA 55
Query: 61 DNKVSEDGFLVVMLSKSKTLGSAGASSAQPAHT--TPPTTAPSSNSTPPQEASVPPPAPT 118
D + ++ LV+ K K SA+P+ T P ++AP+S++TPP S P A T
Sbjct: 56 DAGIKDNDSLVLAGRKRKIPKPPAPQSAEPSKTEAAPESSAPASSATPPPAMSTPVLATT 115
Query: 119 PSIPASNVTSNVTAANAN-----------------------------SDTYGQAASNLVA 149
PA++ T A A ++TYG A NL
Sbjct: 116 S--PATSATPVDPPAPAVPTAATAPAAPVASTTPAAPAVPAAPAASVTNTYG-VAPNL-- 170
Query: 150 GNDLEQTIQQIMDMGGGTWDKETVTRALQAAYNNPERAVDYLYSGIP 196
I ++ M G D+ + AL+AA+ N ERAV+YL+ GIP
Sbjct: 171 -------IDEVASM--GFEDRNQIALALRAAFMNVERAVEYLFEGIP 208
>gi|367049660|ref|XP_003655209.1| hypothetical protein THITE_2118639 [Thielavia terrestris NRRL 8126]
gi|347002473|gb|AEO68873.1| hypothetical protein THITE_2118639 [Thielavia terrestris NRRL 8126]
Length = 389
Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 64/198 (32%), Positives = 103/198 (52%), Gaps = 10/198 (5%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
MK+T+K LK F I +P++ V A+K+ I D +G D P Q+L I++GK+LKDE T+
Sbjct: 1 MKITIKDLKQQRFTIDAEPTELVSALKQKISDERGWD--PKLQKL-IYSGKILKDEDTIE 57
Query: 61 DNKVSEDGFLVVMLSKSKTLGSAGASSAQPAHTTPPTTAPSSNSTPPQEASVPPPAPTPS 120
K+ E GF+V +++K K A A+ + + + + A +
Sbjct: 58 SYKIEEKGFVVCVVNKPKEPKPAPAAESSASAAPATPAPAQTATPAAPAAPAQTAGTPAA 117
Query: 121 IPASNVTSNVTAANANSDTYGQAASNLVA-GNDLEQTIQQIMDMGGGTWDKETVTRALQA 179
PA+ S AA G SN +A G + + I + MG +++ + A++A
Sbjct: 118 APATPTPSRTAAAEPG---VGVGDSNTLAIGQERAEAIANLEAMG---FERSQIDAAMRA 171
Query: 180 AYNNPERAVDYLYSGIPE 197
A+ NPERAV+Y+ +GIPE
Sbjct: 172 AFYNPERAVEYILNGIPE 189
>gi|348690401|gb|EGZ30215.1| hypothetical protein PHYSODRAFT_553293 [Phytophthora sojae]
Length = 450
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 41/75 (54%), Positives = 54/75 (72%), Gaps = 3/75 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
MKLTVKTL+G F + + +D V AVK+ IE +Q N+P QQ LIH GKVLKD++TLA
Sbjct: 1 MKLTVKTLQGVAFPLDAELTDAVSAVKQKIEGLQ---NFPVAQQKLIHAGKVLKDDSTLA 57
Query: 61 DNKVSEDGFLVVMLS 75
+ V E+ FLVVM++
Sbjct: 58 EYNVKENDFLVVMVT 72
>gi|326427437|gb|EGD73007.1| hypothetical protein PTSG_04716 [Salpingoeca sp. ATCC 50818]
Length = 214
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 62/207 (29%), Positives = 100/207 (48%), Gaps = 30/207 (14%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
MK+TVK++K FE+ S V +K+ I + D+ Q LI +G++LKD+ L
Sbjct: 1 MKVTVKSMKAGTFEVEADISKPVRLIKEAIYAEKKSDDLHPDAQRLIFSGRLLKDDDVLE 60
Query: 61 DNKVSEDGFLVVMLSKSKTLGSAGASSAQPAHTTPPTTAPSSNSTPPQEASVPPPAPTPS 120
E+ FLVVM G ++++PA T + S TP ++ P
Sbjct: 61 SLNFKENDFLVVM-------GGKRPAASKPAADKKDTASSKSEETPASSSTTEP------ 107
Query: 121 IPASNVTSNVTAANANSDTYGQAASNLVAGNDLEQTIQQIMDMGGGTWDKETVTRALQAA 180
++ +++ + + G AAS E+++ + MG +D+ RAL AA
Sbjct: 108 ---KPASTTTSSSTPAAPSSGPAAS--------EESLNTLTAMG---FDRAQAERALSAA 153
Query: 181 YNNPERAVDYLYSGIPETAEVAVPVAH 207
+ N ERAV+YL +GIP +A+ P AH
Sbjct: 154 FGNIERAVEYLQNGIPTSAQ---PAAH 177
>gi|408391366|gb|EKJ70745.1| hypothetical protein FPSE_09115 [Fusarium pseudograminearum CS3096]
Length = 242
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 65/201 (32%), Positives = 103/201 (51%), Gaps = 24/201 (11%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
MK+T K LK F + V+PS+ + AVK+ I +G + Q LI++GK+LKD+ T+
Sbjct: 1 MKVTFKDLKQQKFTLDVEPSELISAVKEKISAEKG---WQPQLQKLIYSGKILKDDETVG 57
Query: 61 DNKVSEDGFLVVMLSKSKTLGSAGASSAQPAHTTPPTTAPSSNSTPPQEASVP----PPA 116
+ E GF+V M++K K A +S+A PA P T + P +++ P
Sbjct: 58 SYNIEEKGFVVCMVNKPKPTKPAESSAAPPATPAAPPTRTPAAPAAPAQSASQQAAVPAT 117
Query: 117 PTPSIPASNVTSNVTAANANSDTYGQAASNLVAGNDLEQTIQQIMDMGGGTWDKETVTRA 176
PTP A D + S L G+ + I + MG +++ + A
Sbjct: 118 PTPQRSA--------------DAGSEEPSGLAMGSQRTEAIANMEAMG---FERSQIEAA 160
Query: 177 LQAAYNNPERAVDYLYSGIPE 197
++AA+NNP+RAV+YL +GIP+
Sbjct: 161 MRAAFNNPDRAVEYLLNGIPD 181
>gi|255080554|ref|XP_002503857.1| predicted protein [Micromonas sp. RCC299]
gi|226519124|gb|ACO65115.1| predicted protein [Micromonas sp. RCC299]
Length = 374
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 90/284 (31%), Positives = 129/284 (45%), Gaps = 49/284 (17%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
MK+ KTL FE ++ V+ + + Q P + +LIH GKVL D+ TLA
Sbjct: 1 MKVAFKTLTNQKFEEDFADDASIGDVRAKLSETQ---KIPAPEMVLIHKGKVLTDDATLA 57
Query: 61 DNKVSEDGFLVVM----------LSKSKTLGSAGASSAQPAHTTPPTTAPSSNSTPPQEA 110
V+E F+V+M +A A + PA T A + + +
Sbjct: 58 AAGVTEASFIVMMHQKPKAPKPAPPPPVPKPAAAAPAPAPATTPEAPAAATPETPAATPS 117
Query: 111 SVPPPAPTPSIPASNVTSNVTAANANSDTYGQAASNLVAGNDLEQTIQQIMDMGGGTWDK 170
+ P PA TP+ S+LV G L++TI +M MG +++
Sbjct: 118 TEPAPAGTPT-----------------------DSSLVTGAALQETINNMMSMG---FER 151
Query: 171 ETVTRALQAAYNNPERAVDYLYSGIPET------AEVAVPVAHFPASQAAETGAAGAAPV 224
+ RAL+AA+NNP+RAV+YL +GIPE A A+ AA AA AP
Sbjct: 152 DACVRALRAAFNNPDRAVEYLLTGIPENLMPPAAPAAPAAAAPAAAAPAAAAAAAATAPG 211
Query: 225 SGVPNSSPLNMFPQETLSGAPAGGLGS----LDFLRNNQQVWSL 264
PN+ PLN+FP+ + G GG G LDFLR N Q ++
Sbjct: 212 GPGPNTQPLNLFPEGGVPGGGGGGGGEGSGILDFLRENPQFQAI 255
>gi|258571718|ref|XP_002544662.1| UV excision repair protein Rad23 [Uncinocarpus reesii 1704]
gi|237904932|gb|EEP79333.1| UV excision repair protein Rad23 [Uncinocarpus reesii 1704]
Length = 371
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 85/318 (26%), Positives = 132/318 (41%), Gaps = 89/318 (27%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNG---------- 50
MKL+ + LK F I +PS+T+ +K+ I +G D QQ LI++G
Sbjct: 1 MKLSFRDLKQQKFTIDAEPSETIGQLKEKIAQEKGWD---AAQQKLIYSGELHFERHLRL 57
Query: 51 ---------------KVLKDETTLADNKVSEDGFLVVMLSKSKTLGSAGASSAQPAHTTP 95
K+L++ T+ + E GF+V M+SK KT QPA +TP
Sbjct: 58 ARDLNLLSDVRPSTGKILQNANTIESYNIEEKGFVVCMVSKPKT---------QPAPSTP 108
Query: 96 PTTAPSSNSTPPQEASVPPPAPTPSIPASNVTSNVTAANANSDTY---------GQAA-- 144
PS PP P P+ ++ + A N + G AA
Sbjct: 109 --AGPSQ----------PPATPAPAQTSTPAAPSAPAPATNDPSAPPATPSPAGGDAAAF 156
Query: 145 ---SNLVAGNDLEQTIQQIMDMGGGTWDKETVTRALQAAYNNPERAVDYLYSGIPETAEV 201
S L+ G+ E +Q++ MG + + + RA++AA+ +P+RA++YL +GIP+T E
Sbjct: 157 NNPSTLLMGSQSEAAVQEMEAMG---FPRADIDRAMRAAFFHPDRAIEYLLNGIPDTPE- 212
Query: 202 AVPVAHFPASQAAETGA---AGAAPVSGVPNSSPLNMFPQETLSGAPAGGLGS------- 251
P A S A++ P + P+N+F + G G+
Sbjct: 213 -QPAAREQPSAPAQSNVPVPPSNQPAANAEPDEPINLFEAAAQAAQGGGARGTRTAGASL 271
Query: 252 -----------LDFLRNN 258
LDFLRNN
Sbjct: 272 GGAAGGEGLSNLDFLRNN 289
>gi|440633766|gb|ELR03685.1| UV excision repair protein Rad23 [Geomyces destructans 20631-21]
Length = 397
Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 65/206 (31%), Positives = 99/206 (48%), Gaps = 24/206 (11%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
MKLT + LK F I +P++ + VK IE +G + QQ LI++GK+L+D T+
Sbjct: 1 MKLTFRDLKQQKFVIEAEPTELISDVKAKIEKEKG---WEAAQQKLIYSGKILQDANTVE 57
Query: 61 DNKVSEDGFLVVMLSKSKTLGSAGASSAQPAHTT---------PPTTAPSSNSTPPQEAS 111
K+ E GF+V M+SK K +A A PP A +S +
Sbjct: 58 SYKIEEKGFIVCMVSKPKPAPAAAAPKEPATPAPAASTSTPVPPPVVASNSGTN----TG 113
Query: 112 VPPPAPTPSIPASNVTSNVTAANANSDTYGQAASNLVAGNDLEQTIQQIMDMGGGTWDKE 171
+P TPS PA S A + S L G + + + MG +++
Sbjct: 114 IP---STPS-PAGAGVSATPAPAPAQPQFND-PSALTIGAQRAEAVANLESMG---FERA 165
Query: 172 TVTRALQAAYNNPERAVDYLYSGIPE 197
++ A++AA+ NP+RAV+YL +GIPE
Sbjct: 166 SIDAAMRAAFFNPDRAVEYLLNGIPE 191
>gi|399218138|emb|CCF75025.1| unnamed protein product [Babesia microti strain RI]
Length = 334
Score = 78.2 bits (191), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 64/191 (33%), Positives = 93/191 (48%), Gaps = 37/191 (19%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
MKL TLK + V PSDTV A+ I +N + LIH GK+LK E ++
Sbjct: 1 MKLIACTLKNVETCVEVDPSDTVDALTNKIG--SSLNNASASKMRLIHAGKILKMEQKIS 58
Query: 61 DNKVSEDGFLVVMLSKSKTLGSAGASSAQPAHTTPPTTAPSSNSTPPQEASVPPPAPTPS 120
D +DG +++L ++ S A+ PT AP+ STP +A+ PP P P+
Sbjct: 59 DYSDIKDGDKIIVLFSKQSEASTIAN---------PTPAPT--STPIADANTSPPKPIPT 107
Query: 121 IPASNVTSNVTAANANSDTYGQAASNLVAGNDLEQTIQQIMDMGGGTWDKETVTRALQAA 180
T NA L+ G +LE+ I I++MG +D E+V A+ AA
Sbjct: 108 ----------TDPNA-----------LLMGEELEKAINGIVEMG---FDVESVKAAMSAA 143
Query: 181 YNNPERAVDYL 191
+NNP RA++ L
Sbjct: 144 FNNPNRAIELL 154
>gi|260821380|ref|XP_002606011.1| hypothetical protein BRAFLDRAFT_61506 [Branchiostoma floridae]
gi|229291348|gb|EEN62021.1| hypothetical protein BRAFLDRAFT_61506 [Branchiostoma floridae]
Length = 315
Score = 77.8 bits (190), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 58/202 (28%), Positives = 96/202 (47%), Gaps = 22/202 (10%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++T KTL+ F+I ++ + TV +K+ +E +GK+++P LI+ GK+L+D+ L+
Sbjct: 1 MQVTFKTLQQQTFKIEIEENATVKQLKEKVEGEKGKESFPAAGLKLIYAGKILQDDLPLS 60
Query: 61 DNKVSEDGFLVVMLSKSKTLGSAGASSAQPAHTTPPTTAPSSNSTPPQEASVPPPAPTPS 120
K+ E F+VVM++K QP P P + P P
Sbjct: 61 QYKIDEKNFVVVMVTK------------QPKRNPPRQRQHLLLHLHPHPHLLQLPRPRRR 108
Query: 121 IPASNVTSNVTAANANS--DTYGQAASNLVAGNDLEQTIQQIMDMGGGTWDKETVTRALQ 178
P + Y Q V G E + +M MG ++++ V AL+
Sbjct: 109 NPRKRRRRKRRKKKSRRKLHLYSQ-----VTGTAYETMVTSMMSMG---FERDQVVAALR 160
Query: 179 AAYNNPERAVDYLYSGIPETAE 200
A++NNP+RAV+YL +G+P E
Sbjct: 161 ASFNNPDRAVEYLLTGLPPAME 182
>gi|310791559|gb|EFQ27086.1| UV excision repair protein Rad23 [Glomerella graminicola M1.001]
Length = 391
Score = 77.8 bits (190), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 61/201 (30%), Positives = 99/201 (49%), Gaps = 11/201 (5%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
MK+T K LK F + V+P+D V AVK+ I G+ + Q LI++GK+LKD+ T+
Sbjct: 1 MKVTFKDLKQQKFTLDVEPTDLVSAVKQKI---AGEKGWDPKDQKLIYSGKILKDDDTVE 57
Query: 61 DNKVSEDGFLVVMLSKSKTLG-SAGASSAQPAHTTPPTTAPSSNSTPPQEASVPPPAPTP 119
K+ E GF+V M++K K + A S+ PA P T + P P
Sbjct: 58 SYKIEEKGFVVCMVNKPKAPKPTPAAESSAPAV---PATPAQPVAATPAAPPAPAAHAAA 114
Query: 120 SIPASNVTSNVTAANANSDTYGQAASNLVAGNDLEQTIQQIMDMGGGTWDKETVTRALQA 179
A + D G ++ G ++ I + MG +++ + A++A
Sbjct: 115 PAAAPTTPTPAARTTGGGDA-GPTDPSMAMGAQRQEVIANMEAMG---FERAQIDAAMRA 170
Query: 180 AYNNPERAVDYLYSGIPETAE 200
A+ NP+RAV+YL +GIP++ +
Sbjct: 171 AFYNPDRAVEYLLNGIPDSVQ 191
>gi|169597111|ref|XP_001791979.1| hypothetical protein SNOG_01337 [Phaeosphaeria nodorum SN15]
gi|160707447|gb|EAT90986.2| hypothetical protein SNOG_01337 [Phaeosphaeria nodorum SN15]
Length = 386
Score = 77.8 bits (190), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 72/242 (29%), Positives = 109/242 (45%), Gaps = 45/242 (18%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
MK+T K LK + F I +PS+T+ +K I Q + QQ LI++GK+L+D T+
Sbjct: 1 MKITFKDLKQNKFVIEAEPSETIGELKAKI---QADKGWEVPQQKLIYSGKILQDANTVE 57
Query: 61 DNKVSEDGFLVVMLSKSKTLGSAGASSAQPAHTTPPTTAPSSNSTPPQEASVPPPAPTPS 120
+ E GF+V M+SK+ +A A +A S N+
Sbjct: 58 SYSIEEKGFIVCMVSKTPAAPAAPAP----------LSAVSQNAP--------------- 92
Query: 121 IPASNVTSNVTAANANSDTYGQAASNLVAGNDLEQTIQQIMDMGGGTWDKETVTRALQAA 180
+ A N D S L GN+ E + + MG D + A++AA
Sbjct: 93 -ATPSPAPATQATGRNFDD----PSALTMGNEREAAVANMESMGFARAD---IDAAMRAA 144
Query: 181 YNNPERAVDYLYSGIPETAEVAVPVAHFPASQAAETGAAG------AAPVSGVPNSSPLN 234
+ NP+RAV+YL +GIP++A A + ++ T AAG AAP G P+N
Sbjct: 145 FFNPDRAVEYLLTGIPDSARQEQAQAAQANAPSSPTPAAGGNTGATAAPSGG---DEPIN 201
Query: 235 MF 236
+F
Sbjct: 202 LF 203
>gi|84998362|ref|XP_953902.1| DNA repair protein (RAD23 ) [Theileria annulata]
gi|65304900|emb|CAI73225.1| DNA repair protein (RAD23 homologue), putative [Theileria annulata]
Length = 328
Score = 77.8 bits (190), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 87/253 (34%), Positives = 125/253 (49%), Gaps = 54/253 (21%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGK--DNYPCGQQ---LLIHNGKVLKD 55
M L VKTLK ++ V DT ++ED+ K +++P Q LIH GK+LK
Sbjct: 1 MNLKVKTLKNVQVDVDV--PDTA-----SVEDLMNKVAESFPNMQADSLKLIHAGKILKK 53
Query: 56 ETTLADNKVSEDGFLVVMLSKSKTLGSAGASSAQPAHTTPPTTAPSSNSTPPQEASVPPP 115
E L D +DG V+++S SKT + P+ P + PSS +TP S PP
Sbjct: 54 ELLLKDYSDIKDGDKVIVIS-SKT--------SDPSKNQDPNSQPSSTTTP---TSKPPQ 101
Query: 116 APT----PSIPAS-NVTSNVTAANANSDTYGQAASNLVAGNDLEQTIQQIMDMGGGTWDK 170
PT P+ P+S NV S TY +S V G++LEQ+I +I +MG +++
Sbjct: 102 PPTQDDTPNQPSSGNVVS--------EQTYENVSSKFVMGSELEQSINRICEMG---FER 150
Query: 171 ETVTRALQAAYNNPERAVDYLYSGIPETAEVAVPVAHFPASQA-----AETGAAGAAPVS 225
V RA+ AA+NNP+RAV++L +G +P ++ P A AE G V
Sbjct: 151 PLVERAMAAAFNNPDRAVEFLSTG-------NIPASNMPNINAQNLATAEHGDPAGDDVL 203
Query: 226 GVPNSSPLNMFPQ 238
+ S P MF Q
Sbjct: 204 QMLQSHP--MFEQ 214
>gi|171686384|ref|XP_001908133.1| hypothetical protein [Podospora anserina S mat+]
gi|170943153|emb|CAP68806.1| unnamed protein product [Podospora anserina S mat+]
Length = 383
Score = 77.4 bits (189), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 66/200 (33%), Positives = 102/200 (51%), Gaps = 13/200 (6%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
MK+ K LK F I +P+D + VK+ + + G D P Q+L I++GK+LKDE T+
Sbjct: 1 MKVNFKDLKQQKFTIEFEPTDLISTVKQKLSEDHGWD--PALQKL-IYSGKILKDEDTIE 57
Query: 61 DNKVSEDGFLVVMLSKSKTLGSAGASSAQPAHTTPPTTAPSSNSTPPQEASVPPPAPTPS 120
K+ E GF+V M+SK K A A+ + P A +++ P A +
Sbjct: 58 SCKIEEKGFVVCMVSKPKAPKPAPAAESSSVVPATPAQAAPASTPAPPAAPAQVSNAASA 117
Query: 121 IPASNVTSNVTAANANSDTYGQAASNLVAGNDLEQTIQQIMDMGGGTWDKETVTRALQAA 180
PA+ + + A +S S L G EQ Q I +M +++ + A++AA
Sbjct: 118 APATPSPNRTSGAPNDS-------SALAMG---EQRAQAIANMEAMGFERSQIDAAMRAA 167
Query: 181 YNNPERAVDYLYSGIPETAE 200
+ NPERAV+YL +GIPE +
Sbjct: 168 FFNPERAVEYLLTGIPENVQ 187
>gi|412992628|emb|CCO18608.1| predicted protein [Bathycoccus prasinos]
Length = 392
Score = 77.4 bits (189), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 64/201 (31%), Positives = 104/201 (51%), Gaps = 27/201 (13%)
Query: 1 MKLTVKTLKGSHFEIRV-QPSDTVMAVKKNIEDVQGKDNYPCGQQLLI--HNGKVLKDET 57
MK+ +KTL FEI + PS T + K + ++G+ L+ H G+VL+DE
Sbjct: 1 MKIHLKTLTAQKFEIEISDPSKTTILQCKKL-AIEGQPQLGAETDFLVFVHKGQVLEDEK 59
Query: 58 TLADNKVSEDGFLVVMLSKSKTLGSAGASSAQPAHTTPPTTAPSSNSTPPQEASVPPPAP 117
T+++ +++EDGF+VVM K+K ++A P T+AP + A+V
Sbjct: 60 TVSEAEITEDGFVVVMSKKTKKPAEKTTAAAPAPANPPATSAPDVAAPVAPAAAVAMAPQ 119
Query: 118 TPS-IPASNVTSNVTAANANSDTYGQAASNLVAGNDLEQTIQQIMDMGGGTWDKETVTRA 176
T + +P S + LV G +LE+ I+++ MG + ++ A
Sbjct: 120 TTAEVPVS-------------------SPGLVVGAELEKAIEELQAMG---FPRDQCVAA 157
Query: 177 LQAAYNNPERAVDYLYSGIPE 197
L+AA+NNP+RAV+YL +GIPE
Sbjct: 158 LRAAFNNPDRAVEYLLNGIPE 178
>gi|336371729|gb|EGO00069.1| hypothetical protein SERLA73DRAFT_167911 [Serpula lacrymans var.
lacrymans S7.3]
Length = 380
Score = 77.0 bits (188), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 69/200 (34%), Positives = 107/200 (53%), Gaps = 13/200 (6%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
MK+TVKTL+ F I + SDTV +KK I + QG + Q +I++GKVL D ++
Sbjct: 1 MKITVKTLQQKVFNIDAEGSDTVGDLKKKISESQG---HSIESQKIIYSGKVLPDNKSVE 57
Query: 61 DNKVSEDGFLVVMLSKSKTLGSAGASSAQPAHTTPPTTAPSSNSTPPQEASVPPPAPTPS 120
++ E F +V++ K + +A +S+A + P S + P A P+
Sbjct: 58 SCEIKEKDF-LVLMPKPTSTPAASSSTAAASTPAPAPAPAQSAAAPTPPAPA-----VPA 111
Query: 121 IPASNVTSNVTAANANSDTYGQAASNLVAGNDLEQTIQQIMDMGGGTWDKETVTRALQAA 180
A + AA A +G S V G L T++ +M+MG +++E V RAL+A+
Sbjct: 112 PAAPAAPATQPAAPAPQAAFGDLNS-FVTGEVLNTTVRNMMEMG---FEREQVMRALRAS 167
Query: 181 YNNPERAVDYLYSGIPETAE 200
YNNP+RAV+YL++GIP E
Sbjct: 168 YNNPDRAVEYLFNGIPAHLE 187
>gi|320583701|gb|EFW97914.1| Rad23p [Ogataea parapolymorpha DL-1]
Length = 350
Score = 76.6 bits (187), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 63/205 (30%), Positives = 97/205 (47%), Gaps = 38/205 (18%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ K K + V+ SD+V++ K+ + ++ Q +++GKVL+D+ T
Sbjct: 1 MQVIFKDFKKEKIPLEVELSDSVLSAKEKLASLK---ECEASQVKFVYSGKVLQDDKTFE 57
Query: 61 DNKVSEDGFLVVMLSKSKTLGSAGAS----SAQPAHTTPPTTAPSSNSTPPQEASVPPPA 116
+ K+ E+ ++ M+SK K +A A PA P P+ P QE S PA
Sbjct: 58 NFKIKENDQVIFMISKPKKAAAAPEPAAKEQASPAGAAAPVAEPAQ---PAQEGSSATPA 114
Query: 117 PTPSIPASNVTSNVTAANANSDTYGQAASNLVAGNDLEQTIQQIMDMGGGTWDKETVTRA 176
AS +G+ E IQ IM MG +++ V +A
Sbjct: 115 AFD------------------------ASTFASGSVRETAIQNIMAMG---FERPQVEQA 147
Query: 177 LQAAYNNPERAVDYLYSGIPE-TAE 200
L AA+NNP+RAV+YL SGIP+ TAE
Sbjct: 148 LTAAFNNPDRAVEYLLSGIPQRTAE 172
>gi|154292520|ref|XP_001546834.1| nucleotide excision repair protein RAD23 [Botryotinia fuckeliana
B05.10]
gi|347836511|emb|CCD51083.1| similar to UV excision repair protein (RadW) [Botryotinia
fuckeliana]
Length = 376
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 83/300 (27%), Positives = 129/300 (43%), Gaps = 78/300 (26%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
MKLT K LK F + +P++ V VK+ I +G + QQ LI++GK+L+D TL
Sbjct: 1 MKLTFKDLKQQKFVLEAEPTELVSDVKEKIFKEKG---WEASQQKLIYSGKILQDANTLE 57
Query: 61 DNKVSEDGFLVVMLS-------------------KSKTLGSAGASSAQPAHTTPPTTAPS 101
+ E GF+V M++ + A ++ + +T T P+
Sbjct: 58 SYHIEEKGFIVCMITKPKAAPAASSAPKAPSTPAPASAATPAPPAAPAHSSSTSNTAVPA 117
Query: 102 SNSTPPQEASVPPPAPTPSIPASNVTSNVTAANANSDTYGQAASNLVAGNDLEQTIQQIM 161
+ S P AS+P P TPS ++T G L G + I ++
Sbjct: 118 TPS--PAGASIPAPQATPS----------------NETTG-----LAMGAERSAQIAEME 154
Query: 162 DMGGGTWDKETVTRALQAAYNNPERAVDYLYSGIPET-AEVAVPVAHFPAS-QAAETGAA 219
MG +++ + A++AA+ N ERA++YL +GIPE + P PA+ QA+ AA
Sbjct: 155 SMG---FERSQIEAAMRAAFYNSERAIEYLLNGIPERLLQEQQPTPAAPAAVQASSPPAA 211
Query: 220 GAAPVSGVPNSSPLNMFPQETLSGAPAGG---------------------LGSLDFLRNN 258
G P+++F +G G LG+LDFLRNN
Sbjct: 212 GG-------EDDPVDLFQAAANAGNRGGAARGRPGVDPLGGAGAGAAAGGLGNLDFLRNN 264
>gi|221481235|gb|EEE19636.1| UV excision repair protein rad23, putative [Toxoplasma gondii GT1]
Length = 348
Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 68/219 (31%), Positives = 113/219 (51%), Gaps = 29/219 (13%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
MKL ++TL E+ V +TV+ VK+ +E Q + P +Q L+H GK+L D +
Sbjct: 1 MKLRIRTLSNEEAELEVGAEETVLNVKEKVE--QRWPHMPAARQKLVHAGKILADAQKIK 58
Query: 61 D-NKVSEDGFLVVMLSKS-----------KTLGSAGASSAQPAHTTPPTTAPSSNSTPPQ 108
D + + E+ LVVM++K+ + A A+S PA T ++A S + +
Sbjct: 59 DCSALKENDRLVVMVTKAVSQPAVSSSTAASAAPASAASPSPAETQRGSSAAGSTAGDGE 118
Query: 109 EASVPPPAPT---------PSIPASNVTSNVTAANANSDTYGQAA--SNLVAGNDLEQTI 157
A P + P+ PA + +S +A +A S+ +AA S L G LE+T+
Sbjct: 119 SAKSETPGGSGNASGNSGGPANPA-HASSPSSAPDATSEGLSRAAAESALFTGPQLEETL 177
Query: 158 QQIMDMGGGTWDKETVTRALQAAYNNPERAVDYLYSGIP 196
++ MG + + A++AA+NNP+RAV+YL +G+P
Sbjct: 178 THLVAMG---FPRSQAEEAMRAAFNNPDRAVEYLMNGMP 213
>gi|336470133|gb|EGO58295.1| hypothetical protein NEUTE1DRAFT_117137 [Neurospora tetrasperma
FGSC 2508]
gi|350290173|gb|EGZ71387.1| UV excision repair protein Rad23 [Neurospora tetrasperma FGSC 2509]
Length = 383
Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 62/196 (31%), Positives = 104/196 (53%), Gaps = 5/196 (2%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
MK+T K LK F + ++P++T+ VK+ I + +G + Q LI++GK+LKDE T+
Sbjct: 1 MKVTFKDLKQQKFTLEIEPTETISKVKQKISEERG---WAPELQKLIYSGKILKDEETVE 57
Query: 61 DNKVSEDGFLVVMLSKSKTLGSAGASSAQPAHTTPPTTAPSSNSTPPQEASVPPPAPTPS 120
K+ E GF+V +++K KT A S+ A A + STP A+ + +
Sbjct: 58 SYKIEEKGFVVCVVNKPKTTAPKPAESSSSAAAPATPAAAAPASTPAPPAAPAASSAAAA 117
Query: 121 IPASNVTSNVTAANANSDTYGQAASNLVAGNDLEQTIQQIMDMGGGTWDKETVTRALQAA 180
++ + AA + G +N +A EQ + I +M +++ + A++AA
Sbjct: 118 ASSTPTPARTAAAPEAAPAAGARDANALAMG--EQRAEAIANMEAMGFERSQIDAAMRAA 175
Query: 181 YNNPERAVDYLYSGIP 196
+ NPERAV+YL +GIP
Sbjct: 176 FFNPERAVEYLLNGIP 191
>gi|237844371|ref|XP_002371483.1| UV excision repair protein rhp23, putative [Toxoplasma gondii ME49]
gi|95007044|emb|CAJ20260.1| DNA repair protein rad23 homolog b, putative [Toxoplasma gondii RH]
gi|211969147|gb|EEB04343.1| UV excision repair protein rhp23, putative [Toxoplasma gondii ME49]
gi|221501783|gb|EEE27543.1| UV excision repair protein rhp23, putative [Toxoplasma gondii VEG]
Length = 380
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 68/219 (31%), Positives = 113/219 (51%), Gaps = 29/219 (13%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
MKL ++TL E+ V +TV+ VK+ +E Q + P +Q L+H GK+L D +
Sbjct: 1 MKLRIRTLSNEEAELEVGAEETVLNVKEKVE--QRWPHMPAARQKLVHAGKILADAQKIK 58
Query: 61 D-NKVSEDGFLVVMLSKS-----------KTLGSAGASSAQPAHTTPPTTAPSSNSTPPQ 108
D + + E+ LVVM++K+ + A A+S PA T ++A S + +
Sbjct: 59 DCSALKENDRLVVMVTKAVSQPAVSSSTAASAAPASAASPSPAETQRGSSAAGSTAGDGE 118
Query: 109 EASVPPPAPT---------PSIPASNVTSNVTAANANSDTYGQAA--SNLVAGNDLEQTI 157
A P + P+ PA + +S +A +A S+ +AA S L G LE+T+
Sbjct: 119 SAKSETPGGSGNASGNSGGPANPA-HASSPSSAPDATSEGLSRAAAESALFTGPQLEETL 177
Query: 158 QQIMDMGGGTWDKETVTRALQAAYNNPERAVDYLYSGIP 196
++ MG + + A++AA+NNP+RAV+YL +G+P
Sbjct: 178 THLVAMG---FPRSQAEEAMRAAFNNPDRAVEYLMNGMP 213
>gi|46015810|pdb|1UEL|A Chain A, Solution Structure Of Ubiquitin-Like Domain Of Hhr23b
Complexed With Ubiquitin-Interacting Motif Of
Proteasome Subunit S5a
Length = 95
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/82 (42%), Positives = 56/82 (68%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++T+KTL+ F+I + P +TV A+K+ IE +GKD +P Q LI+ GK+L D+T L
Sbjct: 1 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALK 60
Query: 61 DNKVSEDGFLVVMLSKSKTLGS 82
+ K+ E F+VVM++K K + +
Sbjct: 61 EYKIDEKNFVVVMVTKPKAVST 82
>gi|195504946|ref|XP_002099297.1| GE23445 [Drosophila yakuba]
gi|194185398|gb|EDW99009.1| GE23445 [Drosophila yakuba]
Length = 297
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 57/215 (26%), Positives = 105/215 (48%), Gaps = 45/215 (20%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
MKL+++ L + + ++ V +K+ + + P QL I++G++++D L+
Sbjct: 1 MKLSIRMLDQRTITLEMNETEDVRTLKQRLSSLSEVALPPENVQL-IYSGRIMEDAMPLS 59
Query: 61 DNKVSEDGFLVVMLSKSKTLGSAGASSAQPAHTTPPTTAPSSNSTPPQEASVPPPAPTPS 120
+ +++E G ++V++ K K + PP E V PP+P +
Sbjct: 60 EYRIAE-GRIIVLMGKKKV-----------------------DERPPVE-QVSPPSPLAA 94
Query: 121 IPASNVTSNVTAANANSDTYGQAASNLVAGNDLEQTIQQIMDMGGGTWDKETVTRALQAA 180
P + T +VT + +A N EQ ++++M MG G D V AL+A+
Sbjct: 95 GPIAMRTQDVTPS--------------IASN--EQLVRELMSMGYGEQD---VRSALRAS 135
Query: 181 YNNPERAVDYLYSGIPETAEVAVPVAHFPASQAAE 215
+N+PERA++YL +GIP+ A +A P+ Q+ E
Sbjct: 136 FNHPERAIEYLINGIPQEASPQQELAEIPSGQSTE 170
>gi|308808630|ref|XP_003081625.1| Nucleotide excision repair factor NEF2, RAD23 component (ISS)
[Ostreococcus tauri]
gi|116060090|emb|CAL56149.1| Nucleotide excision repair factor NEF2, RAD23 component (ISS),
partial [Ostreococcus tauri]
Length = 245
Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 53/124 (42%), Positives = 72/124 (58%), Gaps = 6/124 (4%)
Query: 143 AASNLVAGNDLEQTIQQIMDMGGGTWDKETVTRALQAAYNNPERAVDYLYSGIPETAEVA 202
+ + +V G +LE T+ IM MG +++E V +AL+AA+NNP+RAV+YL +GIPE AE
Sbjct: 5 SGAGMVMGPELEATVANIMTMG---FEREQVLKALRAAFNNPDRAVEYLLTGIPEQAEAP 61
Query: 203 VPVAHFPASQAAETGAAGAAPVSGVPNSSPLNMFPQET--LSGAPAGGLGSLDFLRNNQQ 260
P A AA A A VS LN+FP+ +SG AG G LDFLR N Q
Sbjct: 62 RPAAQ-AQPAAAAAPQAPQADVSAALGGGALNLFPEGIPDMSGDGAGDDGMLDFLRENPQ 120
Query: 261 VWSL 264
++
Sbjct: 121 FQAI 124
>gi|164423937|ref|XP_959055.2| hypothetical protein NCU07542 [Neurospora crassa OR74A]
gi|157070296|gb|EAA29819.2| conserved hypothetical protein [Neurospora crassa OR74A]
Length = 383
Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 63/196 (32%), Positives = 105/196 (53%), Gaps = 5/196 (2%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
MK+T K LK F + ++P++T+ VK+ I + +G + Q LI++GK+LKDE T+
Sbjct: 1 MKVTFKDLKQQKFTLEIEPTETISKVKQKISEERG---WAPELQKLIYSGKILKDEETVE 57
Query: 61 DNKVSEDGFLVVMLSKSKTLGSAGASSAQPAHTTPPTTAPSSNSTPPQEASVPPPAPTPS 120
K+ E GF+V +++K KT A S+ A A + STP A+ + +
Sbjct: 58 SYKIEEKGFVVCVVNKPKTTAPKPAESSSSAAAPATPAAAAPASTPAPPAAPAASSAAAA 117
Query: 121 IPASNVTSNVTAANANSDTYGQAASNLVAGNDLEQTIQQIMDMGGGTWDKETVTRALQAA 180
P++ + AA + G +N +A EQ + I +M +++ + A++AA
Sbjct: 118 APSTPTPARTAAAPEAAPAAGARDANALAMG--EQRAEAIANMEAMGFERSQIDAAMRAA 175
Query: 181 YNNPERAVDYLYSGIP 196
+ NPERAV+YL +GIP
Sbjct: 176 FFNPERAVEYLLNGIP 191
>gi|328865495|gb|EGG13881.1| repC-binding protein A [Dictyostelium fasciculatum]
Length = 204
Score = 75.1 bits (183), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 61/195 (31%), Positives = 96/195 (49%), Gaps = 19/195 (9%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
MK+T+K + + V ++V +K+ I Q K ++ Q LI+ GKVL+++ L+
Sbjct: 1 MKITIKNINKEVYTFDVTGDESVTELKQLI---QNKHSHQASWQTLIYGGKVLENDNKLS 57
Query: 61 DNKVSEDGFLVVMLSKSKTLGSAGASSAQPAHTTPPTTAPSSN-STPPQEASVPPPAPTP 119
++E+GFLV M+ K P T TTAP+ +T P + P
Sbjct: 58 TYNITENGFLVCMVKK-------------PKEETVATTAPAVQPATTPVAPTSAPSTTPA 104
Query: 120 SIPASNVTSNVTAANANSDTYGQAASNLVAGNDLEQTIQQIMDMGGGTWDKETVTRALQA 179
S T T + A+S + S+ + G + E I +M+M G ++E V RAL+A
Sbjct: 105 STSTPTNTPAPTPSPASSTSPSGGNSSFIVGPEYEAAITNLMEMSGA--NREMVIRALRA 162
Query: 180 AYNNPERAVDYLYSG 194
++NN ERA D L SG
Sbjct: 163 SFNNAERAADILLSG 177
>gi|429853552|gb|ELA28621.1| nucleotide excision repair protein rad23 [Colletotrichum
gloeosporioides Nara gc5]
Length = 354
Score = 75.1 bits (183), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 61/200 (30%), Positives = 93/200 (46%), Gaps = 18/200 (9%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
MK+T K LK F + V+P+D + AVK+ I +G D P Q+L I++GK+LKD+ T+
Sbjct: 1 MKVTFKDLKQQKFTLDVEPTDLISAVKQKIAGEKGWD--PKDQKL-IYSGKILKDDDTVE 57
Query: 61 DNKVSEDGFLVVMLSKSKTLGSAGASSAQPAHTTPPTTAPSSNSTPPQEASVPPPAPTPS 120
K+ E GF+V M++K K A A S+
Sbjct: 58 SYKIEEKGFVVCMVNKPKAPKPAPAESSSXXXXXXXXXXXXXXXX---------XXXXXX 108
Query: 121 IPASNVTSNVTAANANSDTYGQAASN---LVAGNDLEQTIQQIMDMGGGTWDKETVTRAL 177
S G AASN + G ++ I + MG +++ + A+
Sbjct: 109 XXXXXXXXXXXXXAPRSTGGGDAASNDPSMAMGAQRQEVIANMEAMG---FERSQIDAAM 165
Query: 178 QAAYNNPERAVDYLYSGIPE 197
+AA+ NP+RAV+YL +GIPE
Sbjct: 166 RAAFYNPDRAVEYLLNGIPE 185
>gi|342320043|gb|EGU11986.1| Uv excision repair protein rhp23, putative [Rhodotorula glutinis
ATCC 204091]
Length = 403
Score = 74.7 bits (182), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 63/201 (31%), Positives = 105/201 (52%), Gaps = 16/201 (7%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
+++ KTL+ F I +P++TV +KK I+ QG +P Q +I +GK+L DE T+
Sbjct: 2 VRIQFKTLQQKQFFIEAEPTETVADLKKKIQADQG---FPAESQKIIFSGKILPDEKTVG 58
Query: 61 DNKVSEDGFLVVMLSKSKTLGSAGASSAQPAHTTPPTTAPSSNSTPPQEASVPPPAPTPS 120
+ E F VVM++K K ++ A+++ T AP P A P
Sbjct: 59 EANFKEKDFCVVMVAKPKAAPASAAATSAAPSTPAAAPAPPQTPAQPASAPASAPNAPGP 118
Query: 121 IPASNVTSNVTA------ANANSDTYGQAASNLVAGNDLEQTIQQIMDMGGGTWDKETVT 174
S+ + A AN +D A++ ++G+ LE +I +++ MG + +E V
Sbjct: 119 AAPSSAPAATEAETPAPAANQPADE----ATSFISGSALETSISEMVAMG---FPREQVQ 171
Query: 175 RALQAAYNNPERAVDYLYSGI 195
RA++A++NNP RAV+YL +GI
Sbjct: 172 RAMRASFNNPHRAVEYLMTGI 192
>gi|156837209|ref|XP_001642636.1| hypothetical protein Kpol_370p6 [Vanderwaltozyma polyspora DSM
70294]
gi|156113188|gb|EDO14778.1| hypothetical protein Kpol_370p6 [Vanderwaltozyma polyspora DSM
70294]
Length = 404
Score = 74.7 bits (182), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 57/206 (27%), Positives = 100/206 (48%), Gaps = 23/206 (11%)
Query: 3 LTVKTLKGSHFEIRVQPSDTVM------AVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDE 56
+T K K + ++ S TV+ AVKK+ ED Q K LI++GKVL+++
Sbjct: 4 ITFKDFKKEKIPLDLEGSVTVLDAKKQIAVKKDCEDSQIK---------LIYSGKVLQND 54
Query: 57 TTLADNKVSEDGFLVVMLSKSKTLGS--AGASSAQPAHTTPPTTAPSSNSTPPQEASVPP 114
+T+ D + + ++ M+SK K+ G+ A+ + + + P++ +V
Sbjct: 55 STIGDCGLKDGDQVIFMISKKKSTGTKVTEATPVAASTAADASATSVAAVAEPEQQTVAS 114
Query: 115 PAPTPSIPASNVTSNVTA---ANANSDTYGQAASNLVAGNDLEQTIQQIMDMGGGTWDKE 171
T S A Q+ V G+ + +++IM+MG ++++
Sbjct: 115 EQATESNGNEEAPQQEEAPQQGGQQEQVQVQSDEGFVVGSQRNEAVERIMEMG---YERD 171
Query: 172 TVTRALQAAYNNPERAVDYLYSGIPE 197
V RA++AA+NNP+RAV+YL GIPE
Sbjct: 172 EVNRAMRAAFNNPDRAVEYLLMGIPE 197
>gi|367011717|ref|XP_003680359.1| hypothetical protein TDEL_0C02590 [Torulaspora delbrueckii]
gi|359748018|emb|CCE91148.1| hypothetical protein TDEL_0C02590 [Torulaspora delbrueckii]
Length = 368
Score = 73.9 bits (180), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 63/197 (31%), Positives = 95/197 (48%), Gaps = 34/197 (17%)
Query: 3 LTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPC--GQQLLIHNGKVLKDETTLA 60
+T K K + + S +V+ K VQ C GQ LI++GKVL+D +L
Sbjct: 4 ITFKDFKKEKIPLDLDLSSSVLDAK-----VQLAQKKECEEGQIKLIYSGKVLQDSKSLQ 58
Query: 61 DNKVSEDGFLVVMLSKSKTLGSAGASSAQPAHTTPPTTAPSSNSTPPQEASVPPPAPTPS 120
++ + DG V+ + K + + Q + T+AP S S PAP
Sbjct: 59 ESGLK-DGDQVIFMISKKKSTTTTVTEPQ----SKETSAPVSQS----------PAPQSE 103
Query: 121 IPASNVTSNVTAANANSDTYGQAASNLVAGNDLEQTIQQIMDMGGGTWDKETVTRALQAA 180
PA+ T A+S T V G + +++IM+MG +++E V RAL+AA
Sbjct: 104 TPAAE-----TQQEASSTT----DPGFVVGAQRNEAVERIMEMG---YEREQVDRALRAA 151
Query: 181 YNNPERAVDYLYSGIPE 197
+NNP+RAV+YL GIPE
Sbjct: 152 FNNPDRAVEYLLMGIPE 168
>gi|156051332|ref|XP_001591627.1| hypothetical protein SS1G_07073 [Sclerotinia sclerotiorum 1980]
gi|154704851|gb|EDO04590.1| hypothetical protein SS1G_07073 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 370
Score = 73.9 bits (180), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 64/204 (31%), Positives = 102/204 (50%), Gaps = 23/204 (11%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
MKLT K LK + F I +P++ + VK I +G + QQ LI++GK+L+D T+
Sbjct: 1 MKLTFKDLKQAKFVIEAEPTELISEVKDKISKEKG---WEASQQKLIYSGKILQDANTVE 57
Query: 61 DNKVSEDGFLVVML-------SKSKTLGSAGASSAQPAHTTPPTTAPSSNSTPPQEASVP 113
+ E GF+V M+ + S + A ++ A TP A ++S+ +VP
Sbjct: 58 SYHIEEKGFIVCMVSKPKAAPAASSSATKAPSTPAPATAATPAPPAAPAHSSSTTNTAVP 117
Query: 114 PPAPTPSIPASNVTSNVTAANANSDTYGQAASNLVAGNDLEQTIQQIMDMGGGTWDKETV 173
TPS PA +V A +N T L G + I ++ MG +++ +
Sbjct: 118 ---ATPS-PAGASVPSVQATPSNETT------GLAMGAERSAQIAEMEAMG---FERSQI 164
Query: 174 TRALQAAYNNPERAVDYLYSGIPE 197
A++AA+ N ERA++YL +GIPE
Sbjct: 165 DLAMRAAFFNSERAIEYLLTGIPE 188
>gi|159162808|pdb|1P1A|A Chain A, Nmr Structure Of Ubiquitin-Like Domain Of Hhr23b
Length = 85
Score = 73.9 bits (180), Expect = 7e-11, Method: Composition-based stats.
Identities = 35/82 (42%), Positives = 56/82 (68%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++T+KTL+ F+I + P +TV A+K+ IE +GKD +P Q LI+ GK+L D+T L
Sbjct: 4 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALK 63
Query: 61 DNKVSEDGFLVVMLSKSKTLGS 82
+ K+ E F+VVM++K K + +
Sbjct: 64 EYKIDEKNFVVVMVTKPKAVST 85
>gi|238567698|ref|XP_002386292.1| hypothetical protein MPER_15516 [Moniliophthora perniciosa FA553]
gi|215437819|gb|EEB87222.1| hypothetical protein MPER_15516 [Moniliophthora perniciosa FA553]
Length = 161
Score = 73.9 bits (180), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 56/177 (31%), Positives = 89/177 (50%), Gaps = 18/177 (10%)
Query: 15 IRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVML 74
+ +PSDTV A+K IE G +P Q +I++GK+L D+ T+ + E FLV+M+
Sbjct: 1 VDAEPSDTVGAIKSKIEAAHG---HPVASQKVIYSGKILADDKTIESCGIKEKDFLVLMV 57
Query: 75 SKSKTLGSAGASSAQPAHTTPPTTAPSSNSTPPQEASVPPPAPTPSIPASNVTSNVTAAN 134
SK K +A SS T S +S+ A +
Sbjct: 58 SKPKPTPAATTSSTPAPATPVAAPPTSESSSTTTTAP-----------PPAAAPVSSTEP 106
Query: 135 ANSDTYGQAASNLVAGNDLEQTIQQIMDMGGGTWDKETVTRALQAAYNNPERAVDYL 191
A +G +S ++G+ L+ TI +++MG + K+ V RAL+A++NNP+RAV+YL
Sbjct: 107 AQQRAFGDTSS-FLSGSALQDTINNMVEMG---FPKDQVLRALRASFNNPDRAVEYL 159
>gi|348522726|ref|XP_003448875.1| PREDICTED: UV excision repair protein RAD23 homolog B-like
[Oreochromis niloticus]
Length = 481
Score = 73.9 bits (180), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 46/138 (33%), Positives = 68/138 (49%), Gaps = 29/138 (21%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
+ +T+KTL+ F I + P TV A+K+ IE+ +GKD +P Q LI+ GK+L D+ L
Sbjct: 2 LTITLKTLQQQTFRIEIDPELTVKALKEKIEEHRGKDAFPSVGQKLIYAGKILNDDIPLK 61
Query: 61 DNKVSEDGFLVVMLSKSKTLGSAGASS----------------------------AQPAH 92
+ K+ E F+VVM++K K A A++ + P H
Sbjct: 62 EYKIDEKNFVVVMVTKPKPTSPAEAATHSVPTPAATPVPPPAAAPAPASGPKQVPSTPTH 121
Query: 93 TTPPTTAPSSNSTPPQEA 110
TT P+S S PP EA
Sbjct: 122 TT-SAAVPASQSVPPSEA 138
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 52/153 (33%), Positives = 76/153 (49%), Gaps = 31/153 (20%)
Query: 74 LSKSKTLGSAGASSAQPAHTTPPTTAPSSNSTPPQEASVPP------PAPTPS---IPAS 124
+ ++ T+ S GA+ A+P + +AP+S ST P +S P PA PS PA+
Sbjct: 142 VQENTTVASVGAT-AKPTLDSHSESAPASGSTAPVASSTAPEAVEEAPALVPSDSPTPAA 200
Query: 125 NVTSNVTA--ANANSDT----------------YGQAASNLVAGNDLEQTIQQIMDMGGG 166
+ N SDT +AAS LV G + E + +IM +G
Sbjct: 201 QTEEELREDPENEPSDTAPVQSSASSLVDELGLLEEAASILVTGPEYENLVSEIMSIG-- 258
Query: 167 TWDKETVTRALQAAYNNPERAVDYLYSGIPETA 199
+++E V AL+A+YNNP+RAV+YL GIP A
Sbjct: 259 -YEREQVVAALRASYNNPDRAVEYLLMGIPARA 290
>gi|313224970|emb|CBY20762.1| unnamed protein product [Oikopleura dioica]
Length = 352
Score = 73.6 bits (179), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 68/200 (34%), Positives = 103/200 (51%), Gaps = 28/200 (14%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDN---YPCGQQLLIHNGKVLKDET 57
M+LTVKTL+ F++ +PS V K IE+ D+ Y Q LI+ GK+L+DE
Sbjct: 1 MQLTVKTLQQKAFKVEAEPSILVKDFKALIEEAGKSDHGGVYKAEAQKLIYQGKILEDEK 60
Query: 58 TLADNKVSEDGFLVVMLSKSKTLGSAGASSAQPAHTTPPTTAPSSNSTPPQEASVPPPAP 117
+ + +++E GF+V+M++K K + +P P A + +STP + S
Sbjct: 61 KIEEYQITEKGFIVLMVTKPKVVPKPVEPKPEPTPAAPAAAASTESSTPAESTSSTDATT 120
Query: 118 TPSIPASNVTSNVTAANANSDTYGQAASNLVAGNDLEQTIQQIMDMGGGTWDKETVTRAL 177
TPS P + T A A + + +NL+A MG + + V +AL
Sbjct: 121 TPSQPVA------TEAAAPVNPH---VANLMA-------------MG---FPESQVKQAL 155
Query: 178 QAAYNNPERAVDYLYSGIPE 197
AA+NNPERAV+YL +GIPE
Sbjct: 156 SAAFNNPERAVEYLMNGIPE 175
>gi|366995773|ref|XP_003677650.1| hypothetical protein NCAS_0G04120 [Naumovozyma castellii CBS 4309]
gi|342303519|emb|CCC71299.1| hypothetical protein NCAS_0G04120 [Naumovozyma castellii CBS 4309]
Length = 392
Score = 73.6 bits (179), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 65/201 (32%), Positives = 104/201 (51%), Gaps = 15/201 (7%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPC--GQQLLIHNGKVLKDETT 58
+ +T K K + ++ ++TV+ K Q N C Q LI++GKVL+D T
Sbjct: 2 INITFKDFKKEKIPLALESTNTVLDAK-----TQLAQNKSCEESQIKLIYSGKVLQDAKT 56
Query: 59 LADNKVSEDGFLVVMLSKSKTLGSAGASSAQPAHTTPPTTAPSSNSTPPQEASVPPPAPT 118
L D + + ++ M+SK K+ + + T PTT +S + P E S PA
Sbjct: 57 LEDCGLKDGDQVIFMISKKKSTTTKVTEAPSSTTATAPTTTTNSATNTPAEVS---PAAA 113
Query: 119 PSIPA--SNVTSNVTAANANSDTYGQAASNLVAGNDLEQTIQQIMDMGGGTWDKETVTRA 176
PA T A ++ +T ++ V G+ +QT+++IM+MG +++E V A
Sbjct: 114 SETPAQLPATTEAAPATTSSGETSSAGSAGFVVGSQRDQTVERIMEMG---YEREQVESA 170
Query: 177 LQAAYNNPERAVDYLYSGIPE 197
L+AA+NNP+RAV+YL GIPE
Sbjct: 171 LRAAFNNPDRAVEYLLMGIPE 191
>gi|241950849|ref|XP_002418147.1| UV excision repair protein, putative [Candida dubliniensis CD36]
gi|223641486|emb|CAX43447.1| UV excision repair protein, putative [Candida dubliniensis CD36]
Length = 430
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 62/211 (29%), Positives = 106/211 (50%), Gaps = 26/211 (12%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ K K + V+ +D+V++ K+ + +G D+ Q L+++GKVL+D+ L
Sbjct: 1 MQIVFKDFKKQTVTLDVELTDSVLSTKEKLAQEKGCDS---SQIKLVYSGKVLQDDKNLE 57
Query: 61 DNKVSEDGFLVVMLSKSKTLGSAGASSAQPAHTTPPTTAPSSNSTPPQEASVPPPAPTPS 120
K+ E ++ M++K+K + P T TT +S + S + +
Sbjct: 58 SYKLKEGASIIFMINKTK-------KTPTPVPETKSTTESTSQEQVQAQGSTNESTSSST 110
Query: 121 IPASNVTSNVTAANANSDTYG----------QAASN---LVAGNDLEQTIQQIMDMGGGT 167
+ T+ AA A + + G QA SN G++ E +IQ IM+MG
Sbjct: 111 SSTTTTTAAAAAAAAGAASTGTTTTSEQQPEQAVSNESTFAVGSEREASIQNIMEMG--- 167
Query: 168 WDKETVTRALQAAYNNPERAVDYLYSGIPET 198
+++ V AL+AA+NNP RAV+YL +GIPE+
Sbjct: 168 YERPQVEAALRAAFNNPHRAVEYLLTGIPES 198
>gi|157872825|ref|XP_001684939.1| UV excision repair RAD23-like protein [Leishmania major strain
Friedlin]
gi|68128009|emb|CAJ06783.1| UV excision repair RAD23-like protein [Leishmania major strain
Friedlin]
Length = 425
Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 65/224 (29%), Positives = 102/224 (45%), Gaps = 48/224 (21%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
MK+ +KT+ G E+ V+ + T++ VK+ +ED Y L NG VL+D LA
Sbjct: 1 MKVILKTITGKQHEVDVEATSTILDVKRLLED-----EYEPASLRLCFNGAVLEDSMMLA 55
Query: 61 DNKVSEDGFLVVMLSKSKTLGSAGASSAQPAHT--TPPTTAPSSNSTPPQEASVPPPAPT 118
D V ++ LV+ K K +A+ T P ++AP+S++ PP ++ PA T
Sbjct: 56 DAGVKDNDSLVLAGRKRKIPKPPAPQTAETPTTEAAPESSAPASSTPPP---AMSAPALT 112
Query: 119 PSIPASNVTSNVTAAN--------------------------ANSDTYGQAASNLVAGND 152
+ PA++ A + ++TYG A NL
Sbjct: 113 TTSPATSAAPVDPPAPAVPTAAAAPVTSTTPAGPAVPAAPAASTTNTYG-VAPNL----- 166
Query: 153 LEQTIQQIMDMGGGTWDKETVTRALQAAYNNPERAVDYLYSGIP 196
I ++ MG D+ + AL+AA+ N ERAV+YL+ GIP
Sbjct: 167 ----IDEVASMG--FEDRSQIALALRAAFMNVERAVEYLFEGIP 204
>gi|62362186|gb|AAX81530.1| RAD23B-like protein [Adineta ricciae]
Length = 244
Score = 70.9 bits (172), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 64/201 (31%), Positives = 101/201 (50%), Gaps = 12/201 (5%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M+L +KTL F I + SDTV +K+ I KD Y LI +GK+L+D TL
Sbjct: 1 MQLQIKTLSNEKFAIECELSDTVRTIKEKIAAKDLKDKYEADAVKLIFSGKILEDSKTLE 60
Query: 61 DNKVSEDGFLVVMLSKSKTLGSAGASSAQPAHTTPPTTAPSSNSTPPQEASVPPPAPTPS 120
++ D FLVV+ ++ T AG+++A A + P A + TP P PA
Sbjct: 61 FYSITSDSFLVVV-KQAPTKPQAGSAAAAAAPSNPSGAASAQTRTPTVATPTPAPAAPQQ 119
Query: 121 IPASNVTSNVTAANANSDTYGQAASNLVAGNDLEQTIQQIMDMGGGTWDKETVTRALQAA 180
P ++ T A+ D++ A S E+ ++++ DMG +D+ AL+A+
Sbjct: 120 QPTRPAPASGTTPAASQDSFLSAESR-------EKALRELTDMG---FDRAQAELALRAS 169
Query: 181 YNNPERAVDYLYSG-IPETAE 200
+ + ERA +YL +G IP +E
Sbjct: 170 FYHVERAAEYLITGNIPNISE 190
>gi|311771876|pdb|2WYQ|A Chain A, The Crystal Structure Of The Ubiquitin-Like (Ubl) Domain
Of Hhr23a (Human Homologue A Of Rad23)
Length = 85
Score = 70.5 bits (171), Expect = 7e-10, Method: Composition-based stats.
Identities = 31/76 (40%), Positives = 53/76 (69%)
Query: 3 LTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADN 62
+T+KTL+ F+IR++P +TV +K+ IE +G+D +P Q LI+ GK+L D+ + D
Sbjct: 8 ITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDY 67
Query: 63 KVSEDGFLVVMLSKSK 78
++ E F+VVM++K+K
Sbjct: 68 RIDEKNFVVVMVTKTK 83
>gi|393245007|gb|EJD52518.1| UV excision repair protein Rad23 [Auricularia delicata TFB-10046
SS5]
Length = 375
Score = 70.5 bits (171), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 35/75 (46%), Positives = 50/75 (66%), Gaps = 3/75 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
MK+TVKTL+ F+I +PSDTV +K I+D Q N+P Q LI++GKVL D+ T+
Sbjct: 1 MKITVKTLQQKQFQIDAEPSDTVADLKSKIKDTQ---NHPVEHQKLIYSGKVLADDKTIE 57
Query: 61 DNKVSEDGFLVVMLS 75
++ E FLV+M+S
Sbjct: 58 SCQIKEKDFLVLMVS 72
>gi|403216612|emb|CCK71108.1| hypothetical protein KNAG_0G00510 [Kazachstania naganishii CBS
8797]
Length = 375
Score = 70.5 bits (171), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 60/208 (28%), Positives = 94/208 (45%), Gaps = 31/208 (14%)
Query: 25 AVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVMLSKSKTLGSAG 84
+VK E + + Q LI +GKVL+D A+ + E+ +++M+SK K++
Sbjct: 24 SVKDVKEKLAAARDCDAEQIKLIFSGKVLQDAKPFAETGLKENDHVIMMVSKKKSV---- 79
Query: 85 ASSAQPAHTTPPTTAPSSNSTPPQEASVPPPAPTPSIPASNVTSNVTAANANSDTYGQAA 144
PA P P + E A +V ++ N+ D
Sbjct: 80 -----PAKE--PVKEPETEPVATTETPAATTTEPAPAGAGSVVAD----NSTPD------ 122
Query: 145 SNLVAGNDLEQTIQQIMDMGGGTWDKETVTRALQAAYNNPERAVDYLYSGIPETAEVAVP 204
V G +T+++IM+MG +++ V RAL+AA+NNP+RAV+YL +GIP A
Sbjct: 123 --FVTGQQRNETVERIMEMG---YERAQVERALRAAFNNPDRAVEYLITGIP-----AAQ 172
Query: 205 VAHFPASQAAETGAAGAAPVSGVPNSSP 232
A PA Q E + A+P P P
Sbjct: 173 PAEQPAEQTPEQAQSSASPEHSEPPEQP 200
>gi|363751284|ref|XP_003645859.1| hypothetical protein Ecym_3572 [Eremothecium cymbalariae
DBVPG#7215]
gi|356889493|gb|AET39042.1| Hypothetical protein Ecym_3572 [Eremothecium cymbalariae
DBVPG#7215]
Length = 443
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 62/221 (28%), Positives = 101/221 (45%), Gaps = 30/221 (13%)
Query: 1 MKLTV--KTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETT 58
M +T+ K K +++ P+ T+ K+ + + D Q +I +GKVL+D T
Sbjct: 1 MHITINFKDFKKEKLPLQLSPTATIAEAKQLLAKEKQCDE---SQLKMIFSGKVLQDGHT 57
Query: 59 LADNKVSEDGFLVVMLSKSKT--LGSAGASSAQPAHTTPPTTAPSSNSTPPQEASVPPPA 116
L K+ + ++ M+SK KT L S A++ AP + A
Sbjct: 58 LDACKLKDGDQVIFMISKKKTGTLMSPAATTTSTETKVTEAAAPGIRAVESSSDKAKKTA 117
Query: 117 PTPSIPASNVT---------------SNVTAANANSDTYGQAASNLVAGNDLEQTIQQIM 161
P A T +N T +++N +G V G+ +TI++IM
Sbjct: 118 GAPEGTAMAATTSSAVAAVDAGAAQPTNTTGSDSNPPDHG-----FVTGSQRNETIERIM 172
Query: 162 DMGGGTWDKETVTRALQAAYNNPERAVDYLYSGIPETAEVA 202
+MG +++ V AL+AA+NNP+RAV+YL GIPE + A
Sbjct: 173 EMG---YERSQVESALRAAFNNPDRAVEYLLMGIPEHLQAA 210
>gi|37927447|pdb|1P98|A Chain A, High-Resolution Nmr Structure Of The Ubl-Domain Of
Hhr23a
gi|37927452|pdb|1P9D|U Chain U, High-Resolution Structure Of The Complex Of Hhr23a
Ubiquitin-Like Domain And The C-Terminal Ubiquitin-
Interacting Motif Of Proteasome Subunit S5a
Length = 78
Score = 69.7 bits (169), Expect = 1e-09, Method: Composition-based stats.
Identities = 30/76 (39%), Positives = 52/76 (68%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
+ +T+KTL+ F+IR++P +TV +K+ IE +G+D +P Q LI+ GK+L D+ +
Sbjct: 3 VTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIR 62
Query: 61 DNKVSEDGFLVVMLSK 76
D ++ E F+VVM++K
Sbjct: 63 DYRIDEKNFVVVMVTK 78
>gi|195445192|ref|XP_002070215.1| GK11154 [Drosophila willistoni]
gi|194166300|gb|EDW81201.1| GK11154 [Drosophila willistoni]
Length = 284
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 51/196 (26%), Positives = 95/196 (48%), Gaps = 44/196 (22%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
MKL +++L F + + S +V+A+KK++ + + + Q LI+ G++++D L+
Sbjct: 1 MKLLIRSLDQKSFNVEMNVSQSVLALKKHLAGI-PEISLSAEQLQLIYAGRIMEDTQPLS 59
Query: 61 DNKVSEDGFLVVMLSKSKTLGSAGASSAQPAHTTPPTTAPSSNSTPPQEASVPPPAPTPS 120
+ + +DG ++VM+ K+K + + TPP TA SS QE P AP
Sbjct: 60 EYNI-QDGKIIVMMGKNKPVQVETPVKEELVPPTPPLTAQSSQ----QEPRRPSQAPN-- 112
Query: 121 IPASNVTSNVTAANANSDTYGQAASNLVAGNDLEQTIQQIMDMGGGTWDKETVTRALQAA 180
E +++++ MG +++E V AL+A+
Sbjct: 113 ---------------------------------EDRVRELVSMG---YEEEEVRAALRAS 136
Query: 181 YNNPERAVDYLYSGIP 196
+N+PERA++YL +G+P
Sbjct: 137 FNHPERAIEYLINGLP 152
>gi|4336714|gb|AAD17913.1| repC-binding protein A [Dictyostelium discoideum]
Length = 341
Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 58/215 (26%), Positives = 93/215 (43%), Gaps = 36/215 (16%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
MK+T+K + + V TV +K I + K N Q LI++GK+L+D+ TL
Sbjct: 1 MKVTIKNINKEIYVFEVNGDLTVAELKNLISE---KHNQTPSWQTLIYSGKILEDKRTLE 57
Query: 61 DNKVSEDGFLVVMLSKSKTLGSAGASSAQPAHTTPPTTAPSSNSTPPQEASVPPPAPTPS 120
+++ GF+ +M+ K + PA T P+T P N P
Sbjct: 58 SYNITDSGFIXMMIKKPR---------EAPATTPAPSTTPHLNYISTNHHHYCRTNPNHX 108
Query: 121 I---------------------PASNVTSNVTAANANSDTYGQAASNLVAGNDLEQTIQQ 159
+ + + + + S T Q +S+ G +LE TI+
Sbjct: 109 LTNNTSTTTPTSVPTPTNNTPATPNPTPTTSSTPGSTSTTSPQQSSDFATGTELEATIKN 168
Query: 160 IMDMGGGTWDKETVTRALQAAYNNPERAVDYLYSG 194
I DMG + ++ V RAL+ +NN ERA++YL SG
Sbjct: 169 ITDMG---FARDQVLRALRLTFNNAERAIEYLVSG 200
>gi|119498549|ref|XP_001266032.1| UV excision repair protein (RadW), putative [Neosartorya fischeri
NRRL 181]
gi|119414196|gb|EAW24135.1| UV excision repair protein (RadW), putative [Neosartorya fischeri
NRRL 181]
Length = 360
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 75/252 (29%), Positives = 117/252 (46%), Gaps = 26/252 (10%)
Query: 23 VMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVMLSKSKTLGS 82
V VK+ I +G + Q LI++GK+L+D+ T+ + E GF+V M+SK K S
Sbjct: 7 VGQVKEKISKEKG---WEVPQLKLIYSGKILQDDKTIETYNIEEKGFIVCMVSKPKAPSS 63
Query: 83 AGASSAQPAHTTPPTTAPSSNSTPPQEASVPPPAPTPSIPASNVTSNVTAANANSDTYGQ 142
A S P +TP A S+ + P A P+ + + A S +
Sbjct: 64 AATPSQAP--STPSRAAASTPAAPSAPAPSAAPSAPAVPATPSPAAPAQAPADASAAFND 121
Query: 143 AASNLVAGNDLEQTIQQIMDMGGGTWDKETVTRALQAAYNNPERAVDYLYSGIPET--AE 200
++ L++G+ E I Q+ MG + + + RA++AA+ NP+RA++YL +GIP+ E
Sbjct: 122 PSA-LLSGSQSEAVISQMESMG---FPRSDINRAMRAAFFNPDRAIEYLLNGIPDNIQQE 177
Query: 201 VAVPVAHFPASQAAETGAAGAAPVSGVPNSSPLNMFPQETLSGAPAG------------- 247
A A A + +AP S P+N+F +G G
Sbjct: 178 QQQQAAAAAAPPAPSAPSGESAP-SSTGGDEPVNLFEAAAQAGTGEGTGRGARAGAAGAG 236
Query: 248 -GLGSLDFLRNN 258
GL +LDFLRNN
Sbjct: 237 EGLPNLDFLRNN 248
>gi|340504527|gb|EGR30961.1| uv excision repair protein rad23, putative [Ichthyophthirius
multifiliis]
Length = 423
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 60/203 (29%), Positives = 92/203 (45%), Gaps = 45/203 (22%)
Query: 1 MKLTVKTLKGS-HFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQL-LIHNGKVLKD-ET 57
MKLT+KTLKG+ FEI Q T+ +K I +G+ C + + L+H GK L D +
Sbjct: 1 MKLTIKTLKGNDFFEINFQNETTISQIKDTICQKKGEQ---CKENIKLVHKGKQLNDDQK 57
Query: 58 TLADNKVSEDGFLVVMLSKSKTLGS------AGASSAQPAHTTPPTTAPSSNSTPPQEAS 111
+ + E+ FL++M+ +K G A + Q PP + S+ Q
Sbjct: 58 NCQELGIKENDFLIMMVF-TKKQGQIPKQQPAEIQNEQQTQINPPVQSDSA-----QNHL 111
Query: 112 VPPPAPTPSIPASNVTSNVTAANANSDTYGQAASNLVAGNDLEQTIQQIMDMGGGTWDKE 171
PP I T N ++ EQ ++ I MG ++K
Sbjct: 112 QKPPC---QISQQQSTEN---------------------SEFEQKVKDIEAMG---FEKS 144
Query: 172 TVTRALQAAYNNPERAVDYLYSG 194
+ +ALQAA+NN ERA++YL +G
Sbjct: 145 KIIQALQAAFNNQERAIEYLLNG 167
>gi|255712183|ref|XP_002552374.1| KLTH0C03410p [Lachancea thermotolerans]
gi|238933753|emb|CAR21936.1| KLTH0C03410p [Lachancea thermotolerans CBS 6340]
Length = 391
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 60/199 (30%), Positives = 103/199 (51%), Gaps = 20/199 (10%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPC--GQQLLIHNGKVLKDETT 58
+K+ K K + + T+ K+ + +N C Q LI++GK+L+D+ T
Sbjct: 2 VKINFKDFKKQVLALELDSGSTISEAKQRL-----AENKDCDESQIKLIYSGKILQDDRT 56
Query: 59 LADNKVSEDGFLVVMLSKSKTLGSAGASSAQPAHTTPPTTAPSSNSTPPQEASVPPPAPT 118
+AD K+++ ++ M+SK S T PP+ + + P ++ P+
Sbjct: 57 IADYKLNDGDQVIFMISKK--------KSTTTKTTVPPSEQKPAEPSAPSSSAASAPSGE 108
Query: 119 PSIPASNVTSNVTAANANSDTYGQAASNLVAGNDLEQTIQQIMDMGGGTWDKETVTRALQ 178
+ + ++ AA A+S A V G+ ++T+Q+IM+MG +D+E V RAL+
Sbjct: 109 NAGTSEQTSAPAAAAPASSTAPTDPA--FVTGSRRDETVQRIMEMG---YDREQVERALR 163
Query: 179 AAYNNPERAVDYLYSGIPE 197
AA+NNP+RAV+YL GIPE
Sbjct: 164 AAFNNPDRAVEYLLMGIPE 182
>gi|297811745|ref|XP_002873756.1| hypothetical protein ARALYDRAFT_326056 [Arabidopsis lyrata subsp.
lyrata]
gi|297319593|gb|EFH50015.1| hypothetical protein ARALYDRAFT_326056 [Arabidopsis lyrata subsp.
lyrata]
Length = 134
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/61 (54%), Positives = 42/61 (68%), Gaps = 5/61 (8%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
MK+ VKTLKG+ FEI V+P+D+ KNIE V G YP QQ+LIH GK L+DE T+
Sbjct: 1 MKIIVKTLKGTRFEIEVKPNDS-----KNIETVLGASEYPAAQQILIHKGKKLRDEATME 55
Query: 61 D 61
+
Sbjct: 56 E 56
>gi|195331506|ref|XP_002032442.1| GM26556 [Drosophila sechellia]
gi|194121385|gb|EDW43428.1| GM26556 [Drosophila sechellia]
Length = 288
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 60/220 (27%), Positives = 99/220 (45%), Gaps = 55/220 (25%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYP----CGQQL-LIHNGKVLKD 55
MKL+++ L S + + S V A+K+ + N P + L LI+NG++++D
Sbjct: 1 MKLSIRMLDQSSITLEMDESQEVRALKQRL------GNSPKVAMAAENLQLIYNGRIMED 54
Query: 56 ETTLADNKVSEDGFLVVMLSKSKTLGSAGASSAQPAHTTPPTTAPSSNSTPPQEASVPPP 115
L++ +++ED +V+M K K + S P E V P
Sbjct: 55 AMPLSEYRIAEDKIIVLM-GKKKVIES------------------------PSEEQVAPT 89
Query: 116 APTPSIPASNVTSNVTAANANSDTYGQAASNLVAGNDLEQTIQQIMDMGGGTWDKETVTR 175
P + P T +V + A +D Q + +M MG G +E V
Sbjct: 90 PPLAAGPTVLRTEDVAPSLAPND----------------QWVNDLMSMGYG---EEEVRS 130
Query: 176 ALQAAYNNPERAVDYLYSGIPETAEVAVPVAHFPASQAAE 215
AL+A++N+PERA++YL +GIP+ +A P QA+E
Sbjct: 131 ALRASFNHPERAIEYLINGIPQEVASEQGLAAVPNVQASE 170
>gi|258644511|dbj|BAI39766.1| osRAD23-like [Oryza sativa Indica Group]
gi|258644734|dbj|BAI39979.1| osRAD23-like [Oryza sativa Indica Group]
Length = 88
Score = 68.2 bits (165), Expect = 3e-09, Method: Composition-based stats.
Identities = 29/53 (54%), Positives = 37/53 (69%)
Query: 163 MGGGTWDKETVTRALQAAYNNPERAVDYLYSGIPETAEVAVPVAHFPASQAAE 215
MGGG WD++TV A +AAYNNPERA++YLY+G+PE AE V P A +
Sbjct: 1 MGGGAWDRDTVMSARRAAYNNPERAMEYLYTGVPEQAEAPAAVQALPVPAAVQ 53
>gi|195573349|ref|XP_002104656.1| GD21063 [Drosophila simulans]
gi|194200583|gb|EDX14159.1| GD21063 [Drosophila simulans]
Length = 288
Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 58/219 (26%), Positives = 99/219 (45%), Gaps = 53/219 (24%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNI----EDVQGKDNYPCGQQLLIHNGKVLKDE 56
MKL+++ L + + S V A+K+ + E +N LI+NG++++D
Sbjct: 1 MKLSIRMLDQRTITLEMDESQEVRALKQRLGKSPEVAMAAENLQ-----LIYNGRIMEDA 55
Query: 57 TTLADNKVSEDGFLVVMLSKSKTLGSAGASSAQPAHTTPPTTAPSSNSTPPQEASVPPPA 116
L++ +++ED +V+M K + + S PP+E P P
Sbjct: 56 MPLSEYRIAEDKIIVLM-GKKRVIES-----------------------PPEEQVAPTP- 90
Query: 117 PTPSIPASNVTSNVTAANANSDTYGQAASNLVAGNDLEQTIQQIMDMGGGTWDKETVTRA 176
P + P T +V + A +D Q + +M MG G +E V A
Sbjct: 91 PLAAGPTVLRTEDVAPSLAPND----------------QWVNDLMSMGYG---EEEVRSA 131
Query: 177 LQAAYNNPERAVDYLYSGIPETAEVAVPVAHFPASQAAE 215
L+A++N+PERA++YL +GIP+ +A P QA+E
Sbjct: 132 LRASFNHPERAIEYLINGIPQEVASEQGLAAVPNVQASE 170
>gi|72390575|ref|XP_845582.1| UV excision repair RAD23 protein [Trypanosoma brucei brucei strain
927/4 GUTat10.1]
gi|62358793|gb|AAX79246.1| UV excision repair RAD23 protein, putative [Trypanosoma brucei]
gi|70802117|gb|AAZ12023.1| UV excision repair RAD23 protein, putative [Trypanosoma brucei
brucei strain 927/4 GUTat10.1]
gi|261328991|emb|CBH11969.1| UV excision repair RAD23 protein, putative [Trypanosoma brucei
gambiense DAL972]
Length = 356
Score = 68.2 bits (165), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 85/283 (30%), Positives = 129/283 (45%), Gaps = 33/283 (11%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ +K++ G E V P V +KK +E Y L +N +VL+D T+
Sbjct: 1 MRIILKSVLGKKREHEVSPDTKVEDIKKFLES-----EYTPQSLRLCYNNRVLEDPMTME 55
Query: 61 DNKVSEDGFLVVMLSKSKTLGSAGASSAQPAHTTPPTTAPSS---NSTP--PQEASVPP- 114
+ ED ++V + K +++ + S A + P P+ N P +SVP
Sbjct: 56 QLGIGED-TVIVYVGKKQSVQQLASKSGGCASPSAPAEGPAKGELNENPGVAGASSVPVD 114
Query: 115 -PAPTPSIPASNVTSNVTAANANSDTYGQAASNLVAGNDLEQTIQQIMDMGGGTWDKETV 173
PAP+PS A T + G A ++L + + I I+ MG D+E V
Sbjct: 115 VPAPSPSAQAPATTQQPS---------GPAPASLRSVD--PALIDSIVAMGFN--DREQV 161
Query: 174 TRALQAAYNNPERAVDYLYSGIPETAEVAVPVAHFPASQAAETGAAGAAPVSGVPNSSPL 233
+ AL+AAY N +RAV++L +GIP + + A QA+ G A A P +G P S
Sbjct: 162 SLALRAAYMNADRAVEFLCTGIPPHVQQQLAEADL---QASAMGRA-AVPSAGTPPSDAG 217
Query: 234 NMFPQETLSGAPAGGLGSLDF---LRNNQQVWSLLCCQLLFLF 273
+ Q L A + DF L+NN Q +S L QLL F
Sbjct: 218 SGGTQSDLRRALSAIPHIDDFRSLLQNNPQAFSALAGQLLENF 260
>gi|34015239|gb|AAQ56432.1| putative DNA repairing protein [Oryza sativa Japonica Group]
gi|35210523|dbj|BAC92639.1| unknown protein [Oryza sativa Japonica Group]
gi|35215224|dbj|BAC92575.1| unknown protein [Oryza sativa Japonica Group]
Length = 88
Score = 67.8 bits (164), Expect = 4e-09, Method: Composition-based stats.
Identities = 29/53 (54%), Positives = 37/53 (69%)
Query: 163 MGGGTWDKETVTRALQAAYNNPERAVDYLYSGIPETAEVAVPVAHFPASQAAE 215
MGGG WD++TV A +AAYNNPERA++YLY+G+PE AE V P A +
Sbjct: 1 MGGGAWDRDTVMSARRAAYNNPERAMEYLYTGVPEQAEAPAAVQALPIPAAVQ 53
>gi|125775113|ref|XP_001358808.1| GA10501 [Drosophila pseudoobscura pseudoobscura]
gi|54638549|gb|EAL27951.1| GA10501 [Drosophila pseudoobscura pseudoobscura]
Length = 313
Score = 67.4 bits (163), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 53/199 (26%), Positives = 92/199 (46%), Gaps = 30/199 (15%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
MKL+++TL + + V+A+KK + + G QL I+ G++++DE L+
Sbjct: 1 MKLSIRTLDQRVITLEMDEGQNVLALKKRLVSMPGISQSVDSLQL-IYGGRIMEDELPLS 59
Query: 61 DNKVSEDGFLVVMLSKSKTLGSAGASSAQPAHTTPPTTAPSSNSTPPQEASVPPPAPTPS 120
+ K++ED FLV+M + + +P T + A + STP + A
Sbjct: 60 EYKIAEDKFLVLMGKQKVQQVTKVELEKKPKETA--SAATGTGSTPSGDTGAESYATGGG 117
Query: 121 IPASNVTSNVTAANANSDTYGQAASNLVAGNDLEQTIQQIMDMGGGTWDKETVTRALQAA 180
P S+V N E+ +Q++M MG +++ V AL A+
Sbjct: 118 NPTSSVAPN------------------------EEMVQRLMGMG---YEEMPVRAALSAS 150
Query: 181 YNNPERAVDYLYSGIPETA 199
+N+PE A++YL + IP A
Sbjct: 151 FNHPELAIEYLIAQIPSEA 169
>gi|340959556|gb|EGS20737.1| putative excision repair protein [Chaetomium thermophilum var.
thermophilum DSM 1495]
Length = 376
Score = 67.4 bits (163), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 34/78 (43%), Positives = 51/78 (65%), Gaps = 3/78 (3%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
MK+T+K LK + F + +P+D + VK+ I D QG D P Q+L I++GK+LKDE T+
Sbjct: 1 MKITIKDLKQNKFTVEAEPTDLISTVKQKIADSQGWD--PKSQKL-IYSGKILKDEDTVE 57
Query: 61 DNKVSEDGFLVVMLSKSK 78
K+ E GF+V ++ K K
Sbjct: 58 SYKIEEKGFVVCVVQKPK 75
>gi|347800665|ref|NP_001231653.1| UV excision repair protein RAD23 homolog B isoform 3 [Homo sapiens]
gi|119579420|gb|EAW59016.1| RAD23 homolog B (S. cerevisiae), isoform CRA_a [Homo sapiens]
Length = 337
Score = 67.4 bits (163), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 52/143 (36%), Positives = 73/143 (51%), Gaps = 16/143 (11%)
Query: 83 AGASSAQPAHTTPPTTAPSSNSTP----PQEASVPPPAPTPSIPASNVTSNVTAANANSD 138
A A ++ PA TP + SS P QE PA TP + T + + ++ S+
Sbjct: 44 ALAPTSTPASITPASATASSEPAPASAAKQEKPAEKPAETPVATSPTATDSTSGDSSRSN 103
Query: 139 TYGQAASNLVAGNDLEQTIQQIMDMGGGTWDKETVTRALQAAYNNPERAVDYLYSGIP-- 196
+ A S LV G E + +IM MG +++E V AL+A++NNP+RAV+YL GIP
Sbjct: 104 LFEDATSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIPGD 160
Query: 197 -ETAEVAVPVAHFPASQAAETGA 218
E+ V P QAA TGA
Sbjct: 161 RESQAVVDP------PQAASTGA 177
>gi|428184303|gb|EKX53158.1| hypothetical protein GUITHDRAFT_64501 [Guillardia theta CCMP2712]
Length = 346
Score = 67.0 bits (162), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 77/271 (28%), Positives = 120/271 (44%), Gaps = 52/271 (19%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
MK+ VK++ G +FE+ + S TV +KK I +V+ Y ++L + K +K +
Sbjct: 1 MKVKVKSIAGDNFEVEIGGSSTVFDLKKAISEVK---RYDVTDEMLRDSSKGMK---IIL 54
Query: 61 DNKVSEDGFLVVMLSKSKTLGSAGASSAQPAHTTPPTTAPSSNSTPPQEASVPPPAPTPS 120
K+ +D S+T+ S G P + P + E S P P
Sbjct: 55 QGKILDD---------SQTISSLG-----PKISFFVMMPPEGVTLKKVEVSKPQDQPA-- 98
Query: 121 IPASNVTSNVTAANANSDTYGQAASNLVAGNDLEQTIQQIMDMGGGTWDKETVTRALQAA 180
VTS G + ++ G DLE ++++I MG + + V RAL+ A
Sbjct: 99 -----VTS------------GLQNNTILMGEDLEASVREICGMG---FAESEVRRALRLA 138
Query: 181 YNNPERAVDYLYSGIPETAEVAVPVAHFPASQAAETGAAGAAPVSGVPNSSPLNMFPQET 240
+NNP+RAV+ LY+G + A+ + Q + GA+ AP G S PL F +
Sbjct: 139 FNNPDRAVEILYNGASDDAQ-QMQNEQPAEQQQQQQGASPEAPSHG---SMPLR-FNMDA 193
Query: 241 L----SGAPAGGLGSLDFLRNNQQVWSLLCC 267
L S A AGG L+ LR + Q + C
Sbjct: 194 LAVNASEAGAGG-NQLEMLRRDPQFAFVRHC 223
>gi|357501513|ref|XP_003621045.1| RAD23-like protein [Medicago truncatula]
gi|355496060|gb|AES77263.1| RAD23-like protein [Medicago truncatula]
Length = 142
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 44/97 (45%), Positives = 56/97 (57%), Gaps = 16/97 (16%)
Query: 101 SSNST-----PPQEASVPPPAPTPSIPASNVTSNVTAANANSDTYGQAASNLVAGNDLEQ 155
+SNST P + ++ P A P AS + TYG+A SNL+AG+ LE
Sbjct: 27 TSNSTLSELSAPSKKAIRPKARHPQGAASRMLLG---------TYGKAESNLIAGSTLEP 77
Query: 156 TIQQIMDMGGGTWDKETVTRALQAAYNNPERAVDYLY 192
TIQQI D+G ++ V RAL AAYNNPER V+YLY
Sbjct: 78 TIQQI-DIGRKL-VRDIVIRALSAAYNNPERTVEYLY 112
>gi|32402044|gb|AAP81008.1| RAD23-like protein B [Homo sapiens]
Length = 337
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 43/118 (36%), Positives = 63/118 (53%), Gaps = 7/118 (5%)
Query: 83 AGASSAQPAHTTPPTTAPSSNSTP----PQEASVPPPAPTPSIPASNVTSNVTAANANSD 138
A A ++ PA TP + SS P QE PA TP + T + + ++ S+
Sbjct: 44 ALAPTSTPASITPASATASSEPAPASAAKQEKPAEKPAETPVATSPTATDSTSGDSSRSN 103
Query: 139 TYGQAASNLVAGNDLEQTIQQIMDMGGGTWDKETVTRALQAAYNNPERAVDYLYSGIP 196
+ A S LV G E + +IM MG +++E V AL+A++NNP+RAV+YL GIP
Sbjct: 104 LFEDATSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIP 158
>gi|195400082|ref|XP_002058647.1| GJ14198 [Drosophila virilis]
gi|194142207|gb|EDW58615.1| GJ14198 [Drosophila virilis]
Length = 290
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 50/198 (25%), Positives = 88/198 (44%), Gaps = 50/198 (25%)
Query: 1 MKLTVKTLKGSHFEIRVQP-SDTVMAVKKNIEDVQGKD-NYPCGQQLLIHNGKVLKDETT 58
MKL+++TL + +Q V+ +K+ + VQ + P LI+ G++++D+
Sbjct: 1 MKLSIRTLDQKTISLELQDDKQKVIQLKQRL--VQLPEITQPVESLQLIYGGRIMQDDLP 58
Query: 59 LADNKVSEDGFLVVMLSKSKTLGSAGASSAQPAHTTPPTTAPSSNSTPPQEASVPPPAPT 118
LAD + ED F+V+M +S + + Q H P++ P P
Sbjct: 59 LADYNIKEDRFIVLMTKRSANVQEPESEPRQEHH--------------PEQIVQPAEPPR 104
Query: 119 PSIPASNVTSNVTAANANSDTYGQAASNLVAGNDLEQTIQQIMDMGGGTWDKETVTRALQ 178
PS+ EQ ++ +M MG ++++ V AL
Sbjct: 105 PSVTPD-----------------------------EQRVRDLMLMG---YEEQDVRAALS 132
Query: 179 AAYNNPERAVDYLYSGIP 196
A++N+PERA++YL +GIP
Sbjct: 133 ASFNHPERAIEYLITGIP 150
>gi|254583708|ref|XP_002497422.1| ZYRO0F05192p [Zygosaccharomyces rouxii]
gi|238940315|emb|CAR28489.1| ZYRO0F05192p [Zygosaccharomyces rouxii]
Length = 384
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 61/208 (29%), Positives = 100/208 (48%), Gaps = 29/208 (13%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTV------MAVKKNIEDVQGKDNYPCGQQLLIHNGKVLK 54
+ + K K + + PS +V +A +K+ E+ Q K LI++GKVL+
Sbjct: 2 INIIFKDFKKEKISLELDPSSSVKDAKVRLATEKSCEESQIK---------LIYSGKVLQ 52
Query: 55 DETTLADNKVSEDGFLVVMLSKSKTLGSAGASSAQPAHTTPPTTAPSSNSTPPQEASVPP 114
D L ++ + + ++ M+SK K +A S+A + T PS ++T E
Sbjct: 53 DAKNLQESGLKDGDQVIFMISKKK---AATPSAAAATPASASVTEPSQSATTNTETQAAG 109
Query: 115 PAPTPSIPASNVTSNVTAANANSDTYGQAASNLVAGNDLEQTIQQIMDMGGGTWDKETVT 174
A + A S A + D V G +T+ +IM+MG ++++ V
Sbjct: 110 SAAETTATAPAQPSTTQAPVSTPD--------FVVGQQRNETVDRIMEMG---YERDQVE 158
Query: 175 RALQAAYNNPERAVDYLYSGIPETAEVA 202
RAL+AA+NNP+RAV+YL GIPE + A
Sbjct: 159 RALRAAFNNPDRAVEYLLMGIPENLQRA 186
>gi|401396253|ref|XP_003879788.1| hypothetical protein NCLIV_002400 [Neospora caninum Liverpool]
gi|325114195|emb|CBZ49753.1| hypothetical protein NCLIV_002400 [Neospora caninum Liverpool]
Length = 370
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 61/206 (29%), Positives = 111/206 (53%), Gaps = 15/206 (7%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M+L ++TL E+ V P +T+ +K+ +E Q + P +Q L+H GK+L D +
Sbjct: 1 MRLRIRTLSNEEAELDVGPEETIFNLKEKVE--QKWPHMPAVRQKLVHAGKILADSQKVK 58
Query: 61 DN-KVSEDGFLVVMLSKSKTLGSAGASSAQPAHTTPPTTAPSSNSTPPQEASVPPPAPTP 119
+ + E+ LVVM++K+ + +SSA PA P ++A +S S P S +
Sbjct: 59 ECPSLKENDRLVVMVTKAVAQPAGASSSAAPAAPAPASSATASPSETPSGDSAAASSAGA 118
Query: 120 SIPASNVTSNVTAANANSDTYGQAA---------SNLVAGNDLEQTIQQIMDMGGGTWDK 170
S +++ + + +A + + G+A S L G LE+T+ ++ MG + +
Sbjct: 119 SAVSADASGSASAPAPSGTSEGEAGEALTRTAAESALFTGPQLEETLTHLVAMG---FPR 175
Query: 171 ETVTRALQAAYNNPERAVDYLYSGIP 196
+ +A++AA+NNP+RAV+YL +G+P
Sbjct: 176 DQAEQAMRAAFNNPDRAVEYLMNGMP 201
>gi|289741355|gb|ADD19425.1| nucleotide excision repair factor NEF2 RAD23 component [Glossina
morsitans morsitans]
Length = 377
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 70/250 (28%), Positives = 102/250 (40%), Gaps = 37/250 (14%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
MKLT+KTL F + + TV +K ++ + P QQL I+ G+VL ++ L
Sbjct: 1 MKLTIKTLDQKTFYVEFDDTRTVWDLKSHLHKLPEVGVQPELQQL-IYAGRVLDNDNALK 59
Query: 61 DNKVSEDGFLVVM-------------LSKSKTLGSAGASSAQP---AHTTPPTTAPSSNS 104
+ E FLVVM ++ KT + + A P A T T P
Sbjct: 60 TYSIDERKFLVVMAKKAPPSAAAKEEVAAIKTAKPSEQTRASPSAAAETIKKTEEPKRQE 119
Query: 105 TPPQEASVPPPAPTPSIPASNVTSNVTAANANSDTYGQAASNLVAGNDL-------EQTI 157
A +P+ + + A + Q N++ D E +
Sbjct: 120 KAKTPPPAAQAAASPAATPAATETQPLALDQELQQNPQH-RNILEAMDFSPTAAASESLV 178
Query: 158 QQIMDMGGGTWDKETVTRALQAAYNNPERAVDYLYSGIPETAEVAVPVAHFPASQAAETG 217
Q+IM MG D V RAL A++NNP+RA++YL GIP+ E P+ T
Sbjct: 179 QEIMSMGYAEAD---VRRALLASFNNPDRAIEYLIEGIPDFPEALPPLP---------TI 226
Query: 218 AAGAAPVSGV 227
PVSGV
Sbjct: 227 QPDVNPVSGV 236
>gi|323451497|gb|EGB07374.1| hypothetical protein AURANDRAFT_53989 [Aureococcus
anophagefferens]
Length = 371
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 37/78 (47%), Positives = 47/78 (60%), Gaps = 2/78 (2%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M + VKTL+G F++ P T+ AVK IE Q + LIH+GKVLKDE TLA
Sbjct: 1 MLVAVKTLEGRLFKVEAAPESTIGAVKGLIEASQPE--LKAAAMKLIHSGKVLKDEDTLA 58
Query: 61 DNKVSEDGFLVVMLSKSK 78
D V+E FLV M++K K
Sbjct: 59 DKGVTEQSFLVCMVTKPK 76
>gi|351700121|gb|EHB03040.1| UV excision repair protein RAD23-like protein B [Heterocephalus
glaber]
Length = 140
Score = 64.7 bits (156), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 55/87 (63%), Gaps = 1/87 (1%)
Query: 3 LTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADN 62
+T+KTL+ F+I + P +TV A+ + IE +GKD +P Q LI+ GK+L D+ T+ +
Sbjct: 55 VTLKTLQQQTFKIDIDPEETVKALNEKIESEKGKDAFPVAGQKLIYAGKILNDD-TVKEY 113
Query: 63 KVSEDGFLVVMLSKSKTLGSAGASSAQ 89
K+ E F+V M++K K + + ++ Q
Sbjct: 114 KIDEKNFVVFMVTKPKAVTTPAPATTQ 140
>gi|395740795|ref|XP_003777470.1| PREDICTED: UV excision repair protein RAD23 homolog B-like isoform
2 [Pongo abelii]
Length = 337
Score = 64.3 bits (155), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 43/114 (37%), Positives = 61/114 (53%), Gaps = 12/114 (10%)
Query: 108 QEASVPPPAPTPSIPASNVTSNVTAANANSDTYGQAASNLVAGNDLEQTIQQIMDMGGGT 167
QE PA TP + T + + ++ S+ + A S LV G E + +IM MG
Sbjct: 73 QEKPAEKPAETPVATSPTATDSTSGDSSRSNLFEDATSALVTGQSYENMVTEIMSMG--- 129
Query: 168 WDKETVTRALQAAYNNPERAVDYLYSGIP---ETAEVAVPVAHFPASQAAETGA 218
+++E V AL+A++NNP+RAV+YL GIP E+ V P QAA TGA
Sbjct: 130 YEREQVIAALRASFNNPDRAVEYLLMGIPGDRESQAVVDP------PQAASTGA 177
>gi|21355163|ref|NP_651212.1| CG10694 [Drosophila melanogaster]
gi|7301100|gb|AAF56234.1| CG10694 [Drosophila melanogaster]
gi|19527925|gb|AAL90077.1| AT15685p [Drosophila melanogaster]
gi|220949914|gb|ACL87500.1| CG10694-PA [synthetic construct]
gi|220958714|gb|ACL91900.1| CG10694-PA [synthetic construct]
Length = 290
Score = 64.3 bits (155), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 54/215 (25%), Positives = 99/215 (46%), Gaps = 45/215 (20%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
MKL+++ L + + S V A+K+ + ++ + P LI++G++++D L+
Sbjct: 1 MKLSIRMLDQRTITLEMNESQEVRALKQKLGNL-PEVAMPAENLQLIYSGRIMEDAMPLS 59
Query: 61 DNKVSEDGFLVVMLSKSKTLGSAGASSAQPAHTTPPTTAPSSNSTPPQEASVPPPAPTPS 120
+ +++ED +V+M G + P PT PP A P+
Sbjct: 60 EYRIAEDKIIVLM-------GKKKVDKSSPEEKVAPT---------------PPLAAGPN 97
Query: 121 IPASNVTSNVTAANANSDTYGQAASNLVAGNDLEQTIQQIMDMGGGTWDKETVTRALQAA 180
+ T +V + +A ND Q + +M MG G +E V AL+A+
Sbjct: 98 VLR---TEDVVPS--------------LAPND--QWVSDLMSMGYG---EEEVRSALRAS 135
Query: 181 YNNPERAVDYLYSGIPETAEVAVPVAHFPASQAAE 215
+N+PERA++YL +GIP+ +A P+ Q ++
Sbjct: 136 FNHPERAIEYLINGIPQEVVSEQGLAAIPSVQTSD 170
>gi|443716613|gb|ELU08047.1| hypothetical protein CAPTEDRAFT_227723 [Capitella teleta]
Length = 335
Score = 64.3 bits (155), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 41/55 (74%), Gaps = 3/55 (5%)
Query: 143 AASNLVAGNDLEQTIQQIMDMGGGTWDKETVTRALQAAYNNPERAVDYLYSGIPE 197
A S LV G EQT+Q++M MG + ++ V RAL+A++NNP+RAV+YL SGIP+
Sbjct: 93 AESTLVTGESYEQTVQEMMSMG---FARDMVVRALRASFNNPDRAVEYLLSGIPD 144
>gi|321250146|ref|XP_003191705.1| uv excision repair protein rhp23 [Cryptococcus gattii WM276]
gi|317458172|gb|ADV19918.1| uv excision repair protein rhp23, putative [Cryptococcus gattii
WM276]
Length = 394
Score = 63.9 bits (154), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 58/199 (29%), Positives = 97/199 (48%), Gaps = 22/199 (11%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
+K+T KT++ + V +KK I++ Q +P Q LI++GK+L D +++
Sbjct: 2 VKITFKTVQ-----------NKVADLKKKIQETQ---TFPVENQKLIYSGKILNDASSVE 47
Query: 61 DNKVSEDGFLVVMLSKSKTLGSAGASSAQPAHTTPPTTAPSSNSTPPQE-ASVPPPAPTP 119
K+ E FLVVM+S+ K +A ++ + + E ASV PA
Sbjct: 48 SLKIKEKDFLVVMVSRPKATPAATPAAPATPAAPSTPAPAPAPAPAASEQASVANPAVPA 107
Query: 120 SIPASNVTSNVTAANANSDTYGQAASNL----VAGNDLEQTIQQIMDMGGGTWDKETVTR 175
+ ++ A A S L V G L+ I +++MG ++++ V R
Sbjct: 108 PSAPAAESAPAPAVAAEPAQSSAVESGLGGSFVTGPALQAAIDGMVEMG---FERDQVIR 164
Query: 176 ALQAAYNNPERAVDYLYSG 194
AL+A++NNP+RAV+YL SG
Sbjct: 165 ALRASFNNPDRAVEYLMSG 183
>gi|149037168|gb|EDL91699.1| RAD23b homolog (S. cerevisiae), isoform CRA_a [Rattus norvegicus]
gi|149037169|gb|EDL91700.1| RAD23b homolog (S. cerevisiae), isoform CRA_a [Rattus norvegicus]
Length = 343
Score = 63.9 bits (154), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 48/132 (36%), Positives = 66/132 (50%), Gaps = 9/132 (6%)
Query: 90 PAHTTPPTTAPSSNSTP----PQEASVPPPAPTPSIPASNVTSNVTAANANSDTYGQAAS 145
PA TTP +T SS P E PA TP + + + ++ S+ + A S
Sbjct: 51 PASTTPASTTASSEPAPTGATQPEKPAEKPAQTPVLTSPAPADSTPGDSSRSNLFEDATS 110
Query: 146 NLVAGNDLEQTIQQIMDMGGGTWDKETVTRALQAAYNNPERAVDYLYSGIPETAEVAVPV 205
LV G E + +IM MG +++E V AL+A++NNP+RAV+YL GIP E V
Sbjct: 111 ALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIPGDRESQAVV 167
Query: 206 AHFPASQAAETG 217
P QA TG
Sbjct: 168 D--PPPQAVSTG 177
>gi|60422770|gb|AAH90351.1| Rad23b protein [Rattus norvegicus]
Length = 333
Score = 63.9 bits (154), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 48/132 (36%), Positives = 66/132 (50%), Gaps = 9/132 (6%)
Query: 90 PAHTTPPTTAPSSNSTP----PQEASVPPPAPTPSIPASNVTSNVTAANANSDTYGQAAS 145
PA TTP +T SS P E PA TP + + + ++ S+ + A S
Sbjct: 41 PASTTPASTTASSEPAPTGATQPEKPAEKPAQTPVLTSPAPADSTPGDSSRSNLFEDATS 100
Query: 146 NLVAGNDLEQTIQQIMDMGGGTWDKETVTRALQAAYNNPERAVDYLYSGIPETAEVAVPV 205
LV G E + +IM MG +++E V AL+A++NNP+RAV+YL GIP E V
Sbjct: 101 ALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIPGDRESQAVV 157
Query: 206 AHFPASQAAETG 217
P QA TG
Sbjct: 158 D--PPPQAVSTG 167
>gi|326480573|gb|EGE04583.1| nucleotide excision repair protein RAD23 [Trichophyton equinum
CBS 127.97]
Length = 255
Score = 63.5 bits (153), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 46/74 (62%), Gaps = 3/74 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
MKLT + LK F I +PSD ++ VK+ I +G +P QQ LI++GK+L+D+ T+
Sbjct: 1 MKLTFRDLKQQKFVIDAEPSDKILDVKEKIATEKG---WPASQQKLIYSGKILQDDNTVE 57
Query: 61 DNKVSEDGFLVVML 74
+ E GF+V M+
Sbjct: 58 SYNIEEKGFIVCMV 71
>gi|150864814|ref|XP_001383791.2| nucleotide excision repair protein (ubiquitin-like protein)
[Scheffersomyces stipitis CBS 6054]
gi|149386070|gb|ABN65762.2| nucleotide excision repair protein (ubiquitin-like protein)
[Scheffersomyces stipitis CBS 6054]
Length = 366
Score = 63.5 bits (153), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 64/212 (30%), Positives = 102/212 (48%), Gaps = 24/212 (11%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ K K + V+ +DTV+A K E + + + Q +++GKVL DE TL
Sbjct: 1 MQVIFKDFKKQKVPLEVELTDTVLATK---EKLAAEKDCEAPQLKFVYSGKVLSDEKTLE 57
Query: 61 DNKVSEDGFLVVMLSKSKTLGSAGASSAQPAHTTPPTTAPSSNSTPPQEASVPPPAPTPS 120
+ K+ E ++ M+ S + PA P T SS + + TP
Sbjct: 58 EFKIKEGDSIIFMI-------SKAKKTPTPAPAAAPITTTSSEQS----------SATPG 100
Query: 121 IPASNVTSNVTAANANSDTYGQAASNLVAGNDLEQTIQQIMDMGGGTWDKETVTRALQAA 180
+ T+ A S T + +S G++ E +IQ IM+MG + + V AL+AA
Sbjct: 101 STTATTTTGNAEAAPESSTTSEPSSTFAQGSEREASIQNIMEMG---YQRAEVENALRAA 157
Query: 181 YNNPERAVDYLYSGIPETAEV-AVPVAHFPAS 211
+NNP RAV+YL +GIP++ + VP A P +
Sbjct: 158 FNNPHRAVEYLLTGIPQSLQRPEVPAAVAPVA 189
>gi|308510422|ref|XP_003117394.1| CRE-RAD-23 protein [Caenorhabditis remanei]
gi|308242308|gb|EFO86260.1| CRE-RAD-23 protein [Caenorhabditis remanei]
Length = 323
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 57/197 (28%), Positives = 92/197 (46%), Gaps = 28/197 (14%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
+ + +TL +F + + T+ VK + +G D+Y Q LI+NGK+L D T +
Sbjct: 3 LSVAFRTLTQLNFHLELNEEQTIAEVKALVASERG-DDYAPELQKLIYNGKILDDATKVG 61
Query: 61 DNKVSEDGFLVVMLSKSKTLGSAGASSAQPAHTTPPTTAPSSNSTPPQEASVPPPAPTPS 120
+ F+VVML+K K ++A+PA T +++S P + + P P+
Sbjct: 62 EVGFDSSKFVVVMLAKKKV------TAAEPAST-------ATSSAPVVQENAPSTPAAPA 108
Query: 121 IPASNVTSNVTAANANSDTYGQAASNLVAGNDLEQTIQQIMDMGGGTWDKETVTRALQAA 180
+ A A T Q E T+ I MG +D+E AL+AA
Sbjct: 109 PASIADPVPAAPAAAEQLTSQQ-----------EDTVSAITGMG---YDREQTIAALRAA 154
Query: 181 YNNPERAVDYLYSGIPE 197
+ N +RAV++L +GIPE
Sbjct: 155 FWNADRAVEFLLTGIPE 171
>gi|148670317|gb|EDL02264.1| RAD23b homolog (S. cerevisiae), isoform CRA_b [Mus musculus]
gi|148670318|gb|EDL02265.1| RAD23b homolog (S. cerevisiae), isoform CRA_b [Mus musculus]
Length = 344
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 48/132 (36%), Positives = 66/132 (50%), Gaps = 9/132 (6%)
Query: 90 PAHTTPPTTAPSSNSTPP----QEASVPPPAPTPSIPASNVTSNVTAANANSDTYGQAAS 145
PA TTP +T SS P E PA TP + + + ++ S+ + A S
Sbjct: 51 PASTTPASTTASSEPAPAGATQPEKPAEKPAQTPVLTSPAPADSTPGDSSRSNLFEDATS 110
Query: 146 NLVAGNDLEQTIQQIMDMGGGTWDKETVTRALQAAYNNPERAVDYLYSGIPETAEVAVPV 205
LV G E + +IM MG +++E V AL+A++NNP+RAV+YL GIP E V
Sbjct: 111 ALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIPGDRESQAVV 167
Query: 206 AHFPASQAAETG 217
P QA TG
Sbjct: 168 D--PPPQAVSTG 177
>gi|281207510|gb|EFA81693.1| repC-binding protein A [Polysphondylium pallidum PN500]
Length = 220
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 56/197 (28%), Positives = 100/197 (50%), Gaps = 9/197 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
MK+T++ + + V + V+ +K+ I D K + Q LI++GK+L+++ L+
Sbjct: 1 MKVTIRNVNKEVYTFDVTGEEKVIQLKEMIAD---KHKHLPTWQTLIYSGKILENDNQLS 57
Query: 61 DNKVSEDGFLVVMLSKSK---TLGSAGASSAQPAHTTPPTTAPSSNSTPPQEASVPPPAP 117
++E+GF+V M+ K K T ++ TT S+ A P
Sbjct: 58 TYNITENGFIVCMVKKPKEESTPAPPTTTTTAAPQAPSSTTTTSTPQAATPAAPTTTPIQ 117
Query: 118 TPSIPASNVTSNVTAANANSDTYGQAASNLVAGNDLEQTIQQIMDMGGGTWDKETVTRAL 177
P + T T + A + + + ++ V+G + E ++QI DMG + ++ +TRAL
Sbjct: 118 PTPTPTATSTPTTTPSPATATSPQRDSTGFVSGPEYELIVKQIEDMG---FSRDDITRAL 174
Query: 178 QAAYNNPERAVDYLYSG 194
+A+YNNPERAV+ L +G
Sbjct: 175 RASYNNPERAVELLLTG 191
>gi|157126297|ref|XP_001654581.1| uv excision repair protein rad23 [Aedes aegypti]
gi|108882553|gb|EAT46778.1| AAEL002077-PA [Aedes aegypti]
Length = 347
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 53/196 (27%), Positives = 91/196 (46%), Gaps = 9/196 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQ-PSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTL 59
MK+T+KTLK F+I V DTV +K+ + K +YP +Q LI+ GK+++D+ L
Sbjct: 1 MKITIKTLKQEAFQIEVDVEKDTVRTLKEKFFQ-ESKQDYPVERQRLIYLGKIMEDDLPL 59
Query: 60 ADNKVSEDGFLVVMLSKSKTLGSAGASSAQPAHTTPPTTAPSSNSTPPQEASVPPPAPTP 119
+ + + F+VVM K T + A+S+ ++ + + + Q + + P
Sbjct: 60 SHYSLDDKKFVVVMNKKPTTAPAEPAASSSATAPAESKSSTAKSESGAQSEATAAASKAP 119
Query: 120 SIPASNVTSNVTAANANSDTYGQAASNLVAGNDLEQTIQQIMDMGGGTWDKETVTRALQA 179
D + +D++ +Q+I +MG + E AL+
Sbjct: 120 EEKPKEQEKKEEEEKPKEDKKPEEPPQ----DDIQIKVQRITEMG---YSLEEARIALEI 172
Query: 180 AYNNPERAVDYLYSGI 195
NNP+RAV+YL S I
Sbjct: 173 CDNNPDRAVEYLLSEI 188
>gi|156086838|ref|XP_001610826.1| DNA repair protein Rad23, putatitve [Babesia bovis T2Bo]
gi|154798079|gb|EDO07258.1| DNA repair protein Rad23, putatitve [Babesia bovis]
Length = 313
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 60/203 (29%), Positives = 99/203 (48%), Gaps = 38/203 (18%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
MKL +KTL E+ V+ +V + K +E + P +Q LIH+GKVLK E L+
Sbjct: 1 MKLKIKTLNNLEAEVDVKDGSSVEELMKIVE--THLPSMPSDRQKLIHSGKVLKRELLLS 58
Query: 61 DNKVSEDGFLVVMLSKSKTLGSAGASSAQPAHTTPPTTAPSSNSTPPQEASVPPPAPTPS 120
D +DG V+++++ ++ ++ S T AP ++ + VP P
Sbjct: 59 DYADIKDGDKVIVIAQKQSETTSTVS-------TQSQKAPVADDR-TKAVDVPQP----- 105
Query: 121 IPASNVTSNVTAANANSDTYGQAASNLVAGNDLEQTIQQIMDMGGGTWDKETVTRALQAA 180
A S LV G++LE I +I +MG + + V A+ AA
Sbjct: 106 -------------------INLAESTLVTGSELEMNIARICEMG---FPRAEVEAAMAAA 143
Query: 181 YNNPERAVDYLYSG-IPETAEVA 202
+NNP+RAV++L +G IP+T+ ++
Sbjct: 144 FNNPDRAVEFLTTGTIPDTSMIS 166
>gi|145499454|ref|XP_001435712.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124402847|emb|CAK68315.1| unnamed protein product [Paramecium tetraurelia]
Length = 351
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/79 (40%), Positives = 51/79 (64%), Gaps = 3/79 (3%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
MK+ +KTL G +F + V+ SDT+ VK+ I V+ + GQQ L+ G +L D+TT+A
Sbjct: 1 MKIIIKTLSGQNFPLDVEGSDTISDVKEKIFQVK---QFEVGQQKLLRKGTLLDDKTTIA 57
Query: 61 DNKVSEDGFLVVMLSKSKT 79
+ + E+ FLVVM++ K+
Sbjct: 58 ELGIQENEFLVVMVNAKKS 76
>gi|58259375|ref|XP_567100.1| uv excision repair protein rhp23 [Cryptococcus neoformans var.
neoformans JEC21]
gi|57223237|gb|AAW41281.1| uv excision repair protein rhp23, putative [Cryptococcus
neoformans var. neoformans JEC21]
Length = 406
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 49/78 (62%), Gaps = 3/78 (3%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
+K+T KT++ F + Q SDTV +KK I++ Q +P Q LI++GK+L D +++
Sbjct: 2 VKITFKTVQNKLFTVDAQDSDTVADLKKKIQETQ---TFPVENQKLIYSGKILNDASSVE 58
Query: 61 DNKVSEDGFLVVMLSKSK 78
K+ E FLVVM+S+ K
Sbjct: 59 SLKIKEKDFLVVMVSRPK 76
>gi|344244513|gb|EGW00617.1| UV excision repair protein RAD23-like A [Cricetulus griseus]
Length = 316
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 51/140 (36%), Positives = 74/140 (52%), Gaps = 19/140 (13%)
Query: 73 MLSKSKTLGSAGASSAQPAHTTPPTTAPSSNSTPPQEAS---VPPPA----PTPSIPASN 125
M++K+K AG S+ P +P SS PP S PPPA +PS ++
Sbjct: 1 MVTKAK----AGQSTPAPPEVSPTAAPESSTPFPPAPTSGMSHPPPASREDKSPSEESAT 56
Query: 126 VTS-----NVTAANANSDTYGQAASNLVAGNDLEQTIQQIMDMGGGTWDKETVTRALQAA 180
TS ++ +S AAS LV G++ E + +IM MG +++E V AL+A+
Sbjct: 57 ATSPESISGSVPSSGSSGREEDAASTLVTGSEYETMLTEIMSMG---YERERVVAALRAS 113
Query: 181 YNNPERAVDYLYSGIPETAE 200
YNNP RAV+YL +GIP + E
Sbjct: 114 YNNPHRAVEYLLTGIPGSPE 133
>gi|409045113|gb|EKM54594.1| hypothetical protein PHACADRAFT_258558 [Phanerochaete carnosa
HHB-10118-sp]
Length = 415
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/54 (50%), Positives = 39/54 (72%), Gaps = 3/54 (5%)
Query: 147 LVAGNDLEQTIQQIMDMGGGTWDKETVTRALQAAYNNPERAVDYLYSGIPETAE 200
V G DL+ +Q +M+MG +++E RAL+A+YNNPERAV+YL++GIP E
Sbjct: 153 FVTGADLQTAVQNMMEMG---FEREQAMRALRASYNNPERAVEYLFNGIPSHLE 203
>gi|409080544|gb|EKM80904.1| hypothetical protein AGABI1DRAFT_112618 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 409
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 29/56 (51%), Positives = 40/56 (71%), Gaps = 3/56 (5%)
Query: 145 SNLVAGNDLEQTIQQIMDMGGGTWDKETVTRALQAAYNNPERAVDYLYSGIPETAE 200
S + G L+ TIQ +M+MG +D+E V RAL+A+YNNP+RAV+YL +GIP E
Sbjct: 147 SGFLTGAALQTTIQNMMEMG---FDREQVLRALRASYNNPDRAVEYLMTGIPAHLE 199
>gi|405118128|gb|AFR92903.1| uv excision repair protein rhp23 [Cryptococcus neoformans var.
grubii H99]
Length = 390
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 57/200 (28%), Positives = 100/200 (50%), Gaps = 26/200 (13%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
+K+T KT++ + V +KK I++ Q +P Q LI++GK+L D +++
Sbjct: 2 VKITFKTVQ-----------NKVADLKKKIQETQ---TFPVENQKLIYSGKILNDASSVE 47
Query: 61 DNKVSEDGFLVVMLSKSKTLGSAGASSAQPAHTTPPTTAPSSNSTPPQEASVPPPAPTPS 120
K+ E FLVVM+S+ K +A ++ ++ S ASV PA
Sbjct: 48 SLKIKEKDFLVVMVSRPKATPAATPAAPATPAAPSTPAPAAAASEE---ASVANPAVPAP 104
Query: 121 IPASNVTSNVTAANANSDTYGQAA------SNLVAGNDLEQTIQQIMDMGGGTWDKETVT 174
S ++ A+ ++ +A + V G L+ I +++MG ++++ V
Sbjct: 105 SAPSAESAPAPASAPAAEPAQSSAVESGLGGSFVTGPALQAAIDGMVEMG---FERDQVI 161
Query: 175 RALQAAYNNPERAVDYLYSG 194
RAL+A++NNP+RAV+YL SG
Sbjct: 162 RALRASFNNPDRAVEYLMSG 181
>gi|224003975|ref|XP_002291659.1| Rad23 like protein [Thalassiosira pseudonana CCMP1335]
gi|220973435|gb|EED91766.1| Rad23 like protein, partial [Thalassiosira pseudonana CCMP1335]
Length = 335
Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 34/76 (44%), Positives = 43/76 (56%), Gaps = 3/76 (3%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M LTVKTLKG F + V+ TV VK I Q + P LIH+GKVLKDE +
Sbjct: 1 MNLTVKTLKGGKFTVEVEAEKTVAEVKVAI---QTNKDLPASSMKLIHSGKVLKDEDKIE 57
Query: 61 DNKVSEDGFLVVMLSK 76
+ + FLVVM++K
Sbjct: 58 SCNIKPNDFLVVMIAK 73
>gi|194225605|ref|XP_001916027.1| PREDICTED: UV excision repair protein RAD23 homolog B isoform 1
[Equus caballus]
Length = 336
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 60/175 (34%), Positives = 85/175 (48%), Gaps = 15/175 (8%)
Query: 90 PAHTTPPTTAPSSNSTPPQEASVPPPAPTPSIPASNVTSNVTAANANSDTYGQAASNLVA 149
PA TT ++ P+ S QE PA P + T + + ++ S+ + A S LV
Sbjct: 56 PASTTA-SSEPAPASATKQEKPAEKPAEAPVATSPTSTDSTSGDSSRSNLFEDATSALVT 114
Query: 150 GNDLEQTIQQIMDMGGGTWDKETVTRALQAAYNNPERAVDYLYSGIPETAEVAVPVAHFP 209
G E + +IM MG +++E V AL+A++NNP+RAV+YL GIP E V P
Sbjct: 115 GQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIPGDRESQAVVDPPP 171
Query: 210 ASQAAETGAAGAAPVSGVPNSSPLNMFPQETLSGAPAGGLGSLDFLRNNQQVWSL 264
AA TG AP S V ++ T S +GG L+FLRN Q +
Sbjct: 172 ---AASTG----APQSSVAAAAATTTATTTTTS---SGG-HPLEFLRNQPQFQQM 215
>gi|426219746|ref|XP_004004079.1| PREDICTED: UV excision repair protein RAD23 homolog B [Ovis aries]
Length = 336
Score = 61.2 bits (147), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 40/110 (36%), Positives = 59/110 (53%), Gaps = 4/110 (3%)
Query: 87 SAQPAHTTPPTTAPSSNSTPPQEASVPPPAPTPSIPASNVTSNVTAANANSDTYGQAASN 146
S PA TT ++ P+ S QE P TP T + + ++ S+ + A S
Sbjct: 53 SVTPASTTA-SSEPAPASVTKQEKPAERPVETPVATTPTSTDSTSGDSSRSNLFEDATSA 111
Query: 147 LVAGNDLEQTIQQIMDMGGGTWDKETVTRALQAAYNNPERAVDYLYSGIP 196
LV G E + +IM MG +++E V AL+A++NNP+RAV+YL GIP
Sbjct: 112 LVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIP 158
>gi|323355384|gb|EGA87208.1| Rad23p [Saccharomyces cerevisiae VL3]
Length = 335
Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 27/51 (52%), Positives = 38/51 (74%), Gaps = 3/51 (5%)
Query: 147 LVAGNDLEQTIQQIMDMGGGTWDKETVTRALQAAYNNPERAVDYLYSGIPE 197
V G + +TI++IM+MG + +E V RAL+AA+NNP+RAV+YL GIPE
Sbjct: 79 FVVGTERNETIERIMEMG---YQREEVERALRAAFNNPDRAVEYLLMGIPE 126
>gi|71410028|ref|XP_807329.1| UV excision repair RAD23-like protein [Trypanosoma cruzi strain CL
Brener]
gi|70871306|gb|EAN85478.1| UV excision repair RAD23-like protein, putative [Trypanosoma cruzi]
Length = 361
Score = 60.8 bits (146), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 57/204 (27%), Positives = 96/204 (47%), Gaps = 20/204 (9%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
MK+ ++++ GS V P V VKK +ED D+ L +NG +L++ T+
Sbjct: 1 MKIVLRSIVGSEQVREVTPDTNVETVKKFLEDEYNTDSL-----RLCYNGAILENSKTMT 55
Query: 61 DNKVSEDGFLVVMLSKSKTLGSAGASSAQPAHTTPPTTAPSSNSTPPQ-------EASVP 113
+ V E+ ++ +K + A+PA + PP +++S P E ++
Sbjct: 56 ELGVKENAVFIIAGNKR----NKNKPQAKPATSAPPPQTKTNSSFEPTSVGRGQWEGAIT 111
Query: 114 PPAPTPSIPASNVTSNVTAANANSDTYGQAASNLVAGNDLEQT-IQQIMDMGGGTWDKET 172
PA T + + A A S +A + ++ T + I+ MG D+E
Sbjct: 112 DPA-TSGAGGAPGGIAESRQGAEPPPSEAAPSQGLALHGIDPTLVDNIIAMG--FEDREQ 168
Query: 173 VTRALQAAYNNPERAVDYLYSGIP 196
V AL+AAY NP+RAV++L +GIP
Sbjct: 169 VALALRAAYMNPDRAVEFLCTGIP 192
>gi|211909006|gb|ACJ12793.1| RAD23-like protein B [Sebastiscus marmoratus]
Length = 277
Score = 60.5 bits (145), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 44/134 (32%), Positives = 69/134 (51%), Gaps = 15/134 (11%)
Query: 131 TAANANSDTYGQAASNLVAGNDLEQTIQQIMDMGGGTWDKETVTRALQAAYNNPERAVDY 190
+ A+ N++ +A SNLV G + + ++M MG +++E V AL+A++NNP+RAV+Y
Sbjct: 73 SEASTNTNLIDEAVSNLVTGASYDAMVNEMMLMG---YEREQVVAALRASFNNPDRAVEY 129
Query: 191 LYSGIPETAEVAVPVAHFPASQAAETGAAGAAPVSGVPNSSPLNMFPQETLSGAPAGGLG 250
L +GIP P A A PVSGV +S+P+ +G+ G
Sbjct: 130 LLTGIP---------GRDPGPAAGLD--AVVPPVSGV-HSAPIGGISLPANTGSSPSGGN 177
Query: 251 SLDFLRNNQQVWSL 264
L FLR+ Q +
Sbjct: 178 PLSFLRSQPQFHVM 191
>gi|76155958|gb|AAX27211.2| SJCHGC03112 protein [Schistosoma japonicum]
Length = 155
Score = 60.5 bits (145), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 46/145 (31%), Positives = 75/145 (51%), Gaps = 21/145 (14%)
Query: 53 LKDETTLADNKVSEDGFLVVMLSKSKTLGSAGASSAQPAHTTPPTTAPSSNSTPPQEASV 112
++D +L D KV++ GF+VVM ++ A+ A +T+ SN T +
Sbjct: 1 MEDSKSLKDYKVTDSGFVVVM-----SVSKLPRDIAKEA-----STSVLSNLTDEGK--- 47
Query: 113 PPPAPTPSIPASNVTSNVTAANANS---DTYGQAASNLVAGNDLEQTIQQIMDMGGGTWD 169
P P+ P +V +V A S +T S+LV G D E +Q+++ MG ++
Sbjct: 48 --PMPSEKSPNVDVIESVNVATTPSTATNTLSFLKSSLVLGEDFESVVQELVSMG---FE 102
Query: 170 KETVTRALQAAYNNPERAVDYLYSG 194
K V +A++A +NNP+RA +YL SG
Sbjct: 103 KPLVIQAMRAGFNNPDRAFEYLSSG 127
>gi|24638593|ref|NP_726561.1| Rad23, isoform B [Drosophila melanogaster]
gi|22759400|gb|AAN06526.1| Rad23, isoform B [Drosophila melanogaster]
Length = 343
Score = 60.5 bits (145), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 27/56 (48%), Positives = 41/56 (73%), Gaps = 3/56 (5%)
Query: 141 GQAASNLVAGNDLEQTIQQIMDMGGGTWDKETVTRALQAAYNNPERAVDYLYSGIP 196
+A SNL+ G++ QT+ +++MG + +E V RA+ A+YNNPERAV+YL +GIP
Sbjct: 76 SRAESNLLMGDEYNQTVLSMVEMG---YPREQVERAMAASYNNPERAVEYLINGIP 128
>gi|46124779|ref|XP_386943.1| hypothetical protein FG06767.1 [Gibberella zeae PH-1]
Length = 359
Score = 60.1 bits (144), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 57/202 (28%), Positives = 90/202 (44%), Gaps = 46/202 (22%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
MK+T K LK F + V+PS+ + GK+LKD+ T+
Sbjct: 1 MKVTFKDLKQQKFTLDVEPSE-------------------------LFQGKILKDDETVG 35
Query: 61 DNKVSEDGFLVVMLSKSKTLGSAGASSAQPAHTTPPTTAPSSNSTPPQEASVP----PPA 116
+ E GF+V M++K K A +S+A PA P T + P +++ P
Sbjct: 36 SYNIEEKGFVVCMVNKPKPTKPAESSAAPPATPAAPPTRTPAAPAAPAQSASQQAAVPAT 95
Query: 117 PTPSIPASNVTSNVTAANANSDTYGQAASNLVAGNDLEQTIQQIMDMGGGTWDKETVTRA 176
PTP A D + S L G+ + I + MG +++ + A
Sbjct: 96 PTPQRSA--------------DAGSEEPSGLAMGSQRTEAIANMEAMG---FERSQIEAA 138
Query: 177 LQAAYNNPERAVDYLYSGIPET 198
++AA+NNP+RAV+YL +GIP+
Sbjct: 139 MRAAFNNPDRAVEYLLNGIPDN 160
>gi|196008299|ref|XP_002114015.1| hypothetical protein TRIADDRAFT_58050 [Trichoplax adhaerens]
gi|190583034|gb|EDV23105.1| hypothetical protein TRIADDRAFT_58050 [Trichoplax adhaerens]
Length = 387
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 60/197 (30%), Positives = 101/197 (51%), Gaps = 9/197 (4%)
Query: 22 TVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVMLSKSK-TL 80
TV A+K+ IE +G D + LI+ GK+L D+T + D K++ F+VVM++K + +
Sbjct: 27 TVRALKERIEKDRG-DAFLADDLKLIYGGKLLSDDTIIEDVKINPKNFVVVMVAKKQPSR 85
Query: 81 GSAGASSAQPAHTTPPTTAPSSNSTPPQEASVPPPAPTPSIPASNVTSNVTAANANSDTY 140
S+ SA TT + ++ A S + ++ + + +
Sbjct: 86 QSSSTDSAAARSEAASTTTTTDVASSTSTTGGDSKAQEKSEAKTETSTPQSQPQQSGSSD 145
Query: 141 GQAASNLVAGNDLEQTIQQIMDMGGGTWDKETVTRALQAAYNNPERAVDYLYSGIP---- 196
A S+L++G+ +EQ + +I+ MG + ++ V AL+A++NNP RAV+YL +GIP
Sbjct: 146 SDAGSSLISGSSIEQIVSEIVSMG---FPRDQVLLALRASFNNPHRAVEYLTTGIPANVL 202
Query: 197 ETAEVAVPVAHFPASQA 213
ET P A SQA
Sbjct: 203 ETQTAETPTATQSESQA 219
>gi|320166179|gb|EFW43078.1| predicted protein [Capsaspora owczarzaki ATCC 30864]
Length = 331
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/60 (45%), Positives = 42/60 (70%), Gaps = 3/60 (5%)
Query: 144 ASNLVAGNDLEQTIQQIMDMGGGTWDKETVTRALQAAYNNPERAVDYLYSGIPETAEVAV 203
A+ LV D E+ I Q+M+ G ++++ V RAL+AA+NNP+RA +YL++GIP E A+
Sbjct: 77 ANALVVDEDQERVILQLMEFG---FERDQVVRALRAAFNNPDRAAEYLFNGIPRHVEQAL 133
>gi|407851853|gb|EKG05558.1| UV excision repair RAD23-like protein, putative [Trypanosoma cruzi]
Length = 361
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 57/206 (27%), Positives = 99/206 (48%), Gaps = 24/206 (11%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
MK+ ++++ GS V P V VKK +ED D+ L +NG + ++ T+
Sbjct: 1 MKIILRSIVGSEQVREVTPDTNVETVKKFLEDEYNTDSL-----RLCYNGAIPENSKTMT 55
Query: 61 DNKVSEDGFLVVMLSKSKTLGSAGASSAQPAHTTPPTTAPSSNSTPPQ-------EASVP 113
+ V E+ ++ +K + A+PA + PP A +++S P E ++
Sbjct: 56 ELGVKENAVFIIAGNKR----NKNKPQAKPATSLPPPQAKTNSSFEPTSVGHGQGEGAIT 111
Query: 114 PPAPTPSIPASNVTSNVTAANANSDT--YGQAASNLVAGNDLEQT-IQQIMDMGGGTWDK 170
PA + A +T ++ +A S +A + ++ T + I+ MG D+
Sbjct: 112 EPATSG---AGGAPGGITEPRQGAEPPPSEEAPSQGLALHGVDPTLVDNIIAMG--FEDR 166
Query: 171 ETVTRALQAAYNNPERAVDYLYSGIP 196
E V AL+AAY NP+RAV++L +GIP
Sbjct: 167 EQVALALRAAYMNPDRAVEFLCTGIP 192
>gi|154342013|ref|XP_001566958.1| UV excision repair RAD23-like protein [Leishmania braziliensis
MHOM/BR/75/M2904]
gi|134064283|emb|CAM40483.1| UV excision repair RAD23-like protein [Leishmania braziliensis
MHOM/BR/75/M2904]
Length = 433
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 39/109 (35%), Positives = 55/109 (50%), Gaps = 7/109 (6%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
MK+ +KT+ G E+ V+ + T++ VKK + D Y L NG VL+D LA
Sbjct: 1 MKVILKTITGKQHEVDVEATSTILDVKKLL-----VDEYEPASLRLCFNGAVLEDSKILA 55
Query: 61 DNKVSEDGFLVVMLSKSKTLGSAGASSAQPAHT--TPPTTAPSSNSTPP 107
D V ++ FLV+ K K A SA+P T P +AP S + PP
Sbjct: 56 DAGVKDNDFLVLAGRKRKIPKPASMPSAEPQKTEAAPEFSAPLSATAPP 104
>gi|149248070|ref|XP_001528422.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL
YB-4239]
gi|146448376|gb|EDK42764.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL
YB-4239]
Length = 359
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 36/84 (42%), Positives = 49/84 (58%), Gaps = 11/84 (13%)
Query: 145 SNLVAGNDLEQTIQQIMDMGGGTWDKETVTRALQAAYNNPERAVDYLYSGIPETAEVAVP 204
S G++ E TI IM+MG +D+ V AL+AA+NNP RAV+YL +GIPE+
Sbjct: 61 STFALGSEREATILNIMEMG---YDRPQVEAALRAAFNNPHRAVEYLITGIPES------ 111
Query: 205 VAHFPASQAAETGAAGAAPVSGVP 228
+ H P + T +A A V GVP
Sbjct: 112 LQHRPQQSSTTTNSAPA--VGGVP 133
>gi|194909981|ref|XP_001982049.1| GG11252 [Drosophila erecta]
gi|190656687|gb|EDV53919.1| GG11252 [Drosophila erecta]
Length = 297
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 54/221 (24%), Positives = 101/221 (45%), Gaps = 59/221 (26%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKK---NIEDVQGKDNYPCGQQLLIHNGKVLKDET 57
MKL+++ L + + S V +K+ N+ +V + P LI++G++++D
Sbjct: 1 MKLSIRMLDQHTITLEMNESQDVKTLKQILGNLPEV----SLPAENVQLIYSGRIMEDAM 56
Query: 58 TLADNKVSEDGFLVVMLSKSKTLGSAGASSAQPAHTTPPTTAPSSNSTPPQEASVPPPAP 117
L++ ++E G ++V++ K K + S+P
Sbjct: 57 PLSEYNIAE-GRIIVLMGKKKA-----------------------------DVSLPEEQV 86
Query: 118 TPSIPAS---NVTSNVTAANANSDTYGQAASNLVAGNDLEQTIQQIMDMGGGTWDKETVT 174
+P+IP + T +VT + A + EQ + +M MG G ++ V
Sbjct: 87 SPTIPLAAEPMRTQDVTPSMAPN----------------EQWVCDLMSMGYG---EQEVR 127
Query: 175 RALQAAYNNPERAVDYLYSGIPETAEVAVPVAHFPASQAAE 215
AL+A++N+PERA++YL +GIP+ A +A P+ Q+ E
Sbjct: 128 SALRASFNHPERAIEYLINGIPQEASPEHELAEIPSGQSTE 168
>gi|406700023|gb|EKD03210.1| hypothetical protein A1Q2_02493 [Trichosporon asahii var. asahii
CBS 8904]
Length = 339
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 36/100 (36%), Positives = 54/100 (54%), Gaps = 15/100 (15%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNG---------- 50
MK+T KT+ F I S+T+ +KK I++ Q ++P Q LI++G
Sbjct: 1 MKITFKTVTNKLFSIDADESETIGGLKKKIQEAQ---SFPAELQKLIYSGGYQCSAQTNI 57
Query: 51 --KVLKDETTLADNKVSEDGFLVVMLSKSKTLGSAGASSA 88
K+LKD+ T+ D K+ E FLVVM+SK T+ A +A
Sbjct: 58 PGKILKDDATVGDLKIKEKDFLVVMVSKLTTVTGAALQNA 97
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 24/51 (47%), Positives = 37/51 (72%), Gaps = 4/51 (7%)
Query: 148 VAGNDLEQTIQQIMDMGGGTWDKETVTRALQAAYNNPERAVDYLYSG-IPE 197
V G L+ I +++MG ++++ V +AL+A+YNNP+RAV+YL SG IPE
Sbjct: 89 VTGAALQNAIDGMVEMG---FERDQVVKALRASYNNPDRAVEYLMSGNIPE 136
>gi|443919043|gb|ELU39338.1| UBA domain-containing protein [Rhizoctonia solani AG-1 IA]
Length = 886
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/64 (46%), Positives = 44/64 (68%), Gaps = 5/64 (7%)
Query: 145 SNLVAGNDLEQTIQQIMDMGGGTWDKETVTRALQAAYNNPERAVDYLYSGIPE--TAEVA 202
S+ VAG L I+ +M MG +++E + RAL+A++NNP+RAV+YL +GIPE AE A
Sbjct: 164 SSFVAGGALNSAIENMMGMG---FEREQIMRALRASFNNPDRAVEYLLTGIPEHLLAETA 220
Query: 203 VPVA 206
P +
Sbjct: 221 PPAS 224
>gi|291416572|ref|XP_002724522.1| PREDICTED: UV excision repair protein RAD23 homolog B-like,
partial [Oryctolagus cuniculus]
Length = 365
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 45/76 (59%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M+LT++ F I + P TV A+K+ IE QG+D +P Q L++ G+VL D+ L
Sbjct: 1 MRLTLEAGPQLTFHIDIDPGQTVRALKEKIEAEQGRDAFPVAGQQLLYAGRVLPDDAVLR 60
Query: 61 DNKVSEDGFLVVMLSK 76
D ++ E + V++++
Sbjct: 61 DCQIHEHHAVTVLVAR 76
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/98 (36%), Positives = 53/98 (54%), Gaps = 12/98 (12%)
Query: 113 PPPAPTPSIPASNVTSNVTAANANSDTYGQAASNLVAGNDLEQTIQQIMDMGGGTWDKET 172
PP AP+P+ P + + A + QAA L+ EQ + +I+ MG +++E
Sbjct: 171 PPGAPSPT-PDDAIAGPSSRAQPSE----QAARALLTRPASEQMVAEIVSMG---YEREH 222
Query: 173 VTRALQAAYNNPERAVDYLYSGIP----ETAEVAVPVA 206
V AL+A++NNP RAV+YL G+P AEV P A
Sbjct: 223 VLAALRASFNNPHRAVEYLLMGLPGDRASAAEVEPPQA 260
>gi|146094144|ref|XP_001467183.1| UV excision repair RAD23-like protein [Leishmania infantum JPCM5]
gi|134071547|emb|CAM70236.1| UV excision repair RAD23-like protein [Leishmania infantum JPCM5]
Length = 429
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 37/109 (33%), Positives = 58/109 (53%), Gaps = 7/109 (6%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
MK+ +KT+ G E+ V+ + T++ VK+ +E D Y L NG VL+D LA
Sbjct: 1 MKVILKTITGKQHEVDVEATSTILDVKRLLE-----DEYEPASLRLCFNGAVLEDSRMLA 55
Query: 61 DNKVSEDGFLVVMLSKSKTLGSAGASSAQPAHT--TPPTTAPSSNSTPP 107
D V ++ LV+ K K +A+P T P ++AP+S++TPP
Sbjct: 56 DAGVKDNDSLVLAGRKRKIPKPPAPQTAEPPKTEAAPESSAPASSATPP 104
>gi|68466693|ref|XP_722542.1| hypothetical protein CaO19.1494 [Candida albicans SC5314]
gi|68466980|ref|XP_722405.1| hypothetical protein CaO19.9071 [Candida albicans SC5314]
gi|46444377|gb|EAL03652.1| hypothetical protein CaO19.9071 [Candida albicans SC5314]
gi|46444523|gb|EAL03797.1| hypothetical protein CaO19.1494 [Candida albicans SC5314]
Length = 348
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 38/87 (43%), Positives = 51/87 (58%), Gaps = 11/87 (12%)
Query: 143 AASN---LVAGNDLEQTIQQIMDMGGGTWDKETVTRALQAAYNNPERAVDYLYSGIPETA 199
AASN G++ E +IQ IM+MG +++ V AL+AA+NNP RAV+YL +GIPE+
Sbjct: 75 AASNESTFAVGSEREASIQNIMEMG---YERPQVEAALRAAFNNPHRAVEYLLTGIPESL 131
Query: 200 EVAVPVAHFPASQAAETGAAGAAPVSG 226
+ V A PA TG A A G
Sbjct: 132 QHPVAPAQPPA-----TGTAPAQQTEG 153
>gi|238881986|gb|EEQ45624.1| conserved hypothetical protein [Candida albicans WO-1]
Length = 348
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 38/87 (43%), Positives = 51/87 (58%), Gaps = 11/87 (12%)
Query: 143 AASN---LVAGNDLEQTIQQIMDMGGGTWDKETVTRALQAAYNNPERAVDYLYSGIPETA 199
AASN G++ E +IQ IM+MG +++ V AL+AA+NNP RAV+YL +GIPE+
Sbjct: 75 AASNESTFAVGSEREASIQNIMEMG---YERPQVEAALRAAFNNPHRAVEYLLTGIPESL 131
Query: 200 EVAVPVAHFPASQAAETGAAGAAPVSG 226
+ V A PA TG A A G
Sbjct: 132 QHPVAPAQPPA-----TGTAPAQQTEG 153
>gi|398019764|ref|XP_003863046.1| UV excision repair RAD23-like protein [Leishmania donovani]
gi|322501277|emb|CBZ36356.1| UV excision repair RAD23-like protein [Leishmania donovani]
Length = 429
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 37/109 (33%), Positives = 58/109 (53%), Gaps = 7/109 (6%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
MK+ +KT+ G E+ V+ + T++ VK+ +E D Y L NG VL+D LA
Sbjct: 1 MKVILKTITGKQHEVDVEATSTILDVKRLLE-----DEYEPASLRLCFNGAVLEDSRMLA 55
Query: 61 DNKVSEDGFLVVMLSKSKTLGSAGASSAQPAHT--TPPTTAPSSNSTPP 107
D V ++ LV+ K K +A+P T P ++AP+S++TPP
Sbjct: 56 DAGVKDNDSLVLAGRKRKIPKPPAPQTAEPPKTEAAPESSAPASSATPP 104
>gi|214868|gb|AAA49979.1| ubiquitin-like fusion protein [Xenopus laevis]
Length = 701
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 48/75 (64%), Gaps = 3/75 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M+L ++TL G+ FE+RV P +TV +VK I+ ++G P QQ LI N L+DE +L+
Sbjct: 28 MELFIETLTGTCFELRVSPYETVTSVKSKIQRLEG---IPVAQQHLIWNNMELEDECSLS 84
Query: 61 DNKVSEDGFLVVMLS 75
D +SE L ++L+
Sbjct: 85 DYNISEGCTLKMVLA 99
>gi|255724082|ref|XP_002546970.1| conserved hypothetical protein [Candida tropicalis MYA-3404]
gi|240134861|gb|EER34415.1| conserved hypothetical protein [Candida tropicalis MYA-3404]
Length = 335
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/54 (50%), Positives = 37/54 (68%), Gaps = 3/54 (5%)
Query: 145 SNLVAGNDLEQTIQQIMDMGGGTWDKETVTRALQAAYNNPERAVDYLYSGIPET 198
S G + E TIQ IM+MG +++ V AL+AA+NNP RAV+YL +GIPE+
Sbjct: 81 STFAVGTEREATIQNIMEMG---YERSQVEAALRAAFNNPHRAVEYLLTGIPES 131
>gi|159475896|ref|XP_001696050.1| hypothetical protein CHLREDRAFT_80907 [Chlamydomonas reinhardtii]
gi|158275221|gb|EDP00999.1| predicted protein [Chlamydomonas reinhardtii]
Length = 370
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 47/76 (61%), Gaps = 6/76 (7%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQL--LIHNGKVLKDETT 58
MKLT +T+ G F + + S T+ A+K +++ Q C ++ L++ GKVL D TT
Sbjct: 1 MKLTFRTIAGKSFNVEAEDSMTIGALKDKVQETQPD----CTREAMKLVYKGKVLDDATT 56
Query: 59 LADNKVSEDGFLVVML 74
+ DN+V+E GF+VV +
Sbjct: 57 VGDNQVTEQGFIVVFI 72
>gi|432091539|gb|ELK24564.1| UV excision repair protein RAD23 like protein B, partial [Myotis
davidii]
Length = 414
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 26/56 (46%), Positives = 38/56 (67%)
Query: 23 VMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVMLSKSK 78
V A+K+ IE +GKD +P Q LI+ GK+L D+T L + K+ E F+VVM++K K
Sbjct: 1 VKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALKEYKIDEKNFVVVMVTKPK 56
>gi|148232894|ref|NP_001081336.1| ubiquitin-like fusion protein [Xenopus laevis]
gi|51703870|gb|AAH80990.1| LOC397781 protein [Xenopus laevis]
Length = 701
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 48/75 (64%), Gaps = 3/75 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M+L ++TL G+ FE+RV P +TV +VK I+ ++G P QQ LI N L+DE +L+
Sbjct: 28 MELFIETLTGTCFELRVSPYETVTSVKSKIQRLEG---IPVAQQHLIWNNMELEDECSLS 84
Query: 61 DNKVSEDGFLVVMLS 75
D +SE L ++L+
Sbjct: 85 DYNISEGCTLKMVLA 99
>gi|449279914|gb|EMC87347.1| AN1-type zinc finger and ubiquitin domain-containing protein 1
[Columba livia]
Length = 699
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 47/75 (62%), Gaps = 3/75 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M+L ++TL G+ FE+RV P +TV++VK I+ ++G P QQ LI N LKD+ L
Sbjct: 28 MELFIETLTGTCFELRVSPFETVISVKAKIQRLEG---IPVSQQHLIWNNTELKDDYCLN 84
Query: 61 DNKVSEDGFLVVMLS 75
D +SE L ++L+
Sbjct: 85 DYNISEGCTLKLVLA 99
>gi|224052490|ref|XP_002198304.1| PREDICTED: AN1-type zinc finger protein 4 [Taeniopygia guttata]
Length = 715
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 47/75 (62%), Gaps = 3/75 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M+L ++TL G+ FE+RV P +TV++VK I+ ++G P QQ LI N LKD+ L
Sbjct: 28 MELFIETLTGTCFELRVSPFETVISVKAKIQRLEG---IPVSQQHLIWNNMELKDDYCLD 84
Query: 61 DNKVSEDGFLVVMLS 75
D +SE L ++L+
Sbjct: 85 DYNISEGCTLKLVLA 99
>gi|403370790|gb|EJY85262.1| Ubiquitin [Oxytricha trifallax]
Length = 411
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 32/79 (40%), Positives = 47/79 (59%), Gaps = 4/79 (5%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDET-TL 59
MK+ +KTL+G I V+ SDT+ VK E +Q + LI GKV++D+ +L
Sbjct: 1 MKIIIKTLQGKQLPIEVEESDTIRQVK---EKIQAEHQMQADLMKLIAYGKVMEDDNKSL 57
Query: 60 ADNKVSEDGFLVVMLSKSK 78
D ++ E FLVVM+SK+K
Sbjct: 58 KDYQIKEGDFLVVMISKAK 76
>gi|417410194|gb|JAA51574.1| Putative nucleotide excision repair factor nef2 rad23 component,
partial [Desmodus rotundus]
Length = 377
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 48/129 (37%), Positives = 65/129 (50%), Gaps = 14/129 (10%)
Query: 136 NSDTYGQAASNLVAGNDLEQTIQQIMDMGGGTWDKETVTRALQAAYNNPERAVDYLYSGI 195
S+ + A S LV G E + +IM MG +++E V AL+A++NNP+RAV+YL GI
Sbjct: 142 RSNLFEDATSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGI 198
Query: 196 PETAEVAVPVAHFPASQAAETGAAGAAPVSGVPNSSPLNMFPQETLSGAPAGGLGSLDFL 255
P E V P AA TG AP S V ++ T S +GG L+FL
Sbjct: 199 PGDRESQAVVDPPP---AATTG----APQSSVAAAAATTTATTTTTS---SGG-HPLEFL 247
Query: 256 RNNQQVWSL 264
RN Q +
Sbjct: 248 RNQPQFQQM 256
>gi|47718026|gb|AAH70960.1| Rad23b protein [Rattus norvegicus]
Length = 252
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 34/83 (40%), Positives = 47/83 (56%), Gaps = 5/83 (6%)
Query: 135 ANSDTYGQAASNLVAGNDLEQTIQQIMDMGGGTWDKETVTRALQAAYNNPERAVDYLYSG 194
+ S+ + A S LV G E + +IM MG +++E V AL+A++NNP+RAV+YL G
Sbjct: 9 SRSNLFEDATSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMG 65
Query: 195 IPETAEVAVPVAHFPASQAAETG 217
IP E V P QA TG
Sbjct: 66 IPGDRESQAVVD--PPPQAVSTG 86
>gi|296211496|ref|XP_002752432.1| PREDICTED: ubiquitin-40S ribosomal protein S27a-like [Callithrix
jacchus]
Length = 155
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 38/97 (39%), Positives = 54/97 (55%), Gaps = 12/97 (12%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D +G P QQ LI GK L+D TL+
Sbjct: 1 MQIFVKTLMGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 61 DNKVSED--GFLVVMLSKSKTLGSAGASSAQPAHTTP 95
DN + ++ G LV+ L GA + ++TTP
Sbjct: 58 DNNIQKESTGHLVLRL-------RGGAKKRKKSYTTP 87
>gi|195144934|ref|XP_002013451.1| GL23402 [Drosophila persimilis]
gi|194102394|gb|EDW24437.1| GL23402 [Drosophila persimilis]
Length = 314
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 52/202 (25%), Positives = 92/202 (45%), Gaps = 36/202 (17%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
MKL+++TL + + V+A+KK + + G QL I+ G++++D L+
Sbjct: 1 MKLSIRTLDQRVITLEMDEGQNVLALKKRLVSMPGISQSVDSLQL-IYGGRIMEDGLPLS 59
Query: 61 DNKVSEDGFLVVMLSKSKTLGSAGASSAQPAHTTPPTTAPSSNSTPPQEASVPPPAPTPS 120
+ K++ED FLV+M G Q P ++
Sbjct: 60 EYKIAEDKFLVMM----------GKQKVQQVTKVELEKKPKETAS--------------- 94
Query: 121 IPASNVTSNVTAANANSDTYGQAASN---LVAGNDLEQTIQQIMDMGGGTWDKETVTRAL 177
A+ + T+ + ++TY N VA N E+ +Q++M MG +++ V AL
Sbjct: 95 --AATGAGSATSGDTGAETYATGGGNPTSSVAPN--EEMVQRLMGMG---YEEMPVRAAL 147
Query: 178 QAAYNNPERAVDYLYSGIPETA 199
A++N+PE A++YL + IP A
Sbjct: 148 SASFNHPELAIEYLIAQIPSEA 169
>gi|212645665|ref|NP_496488.2| Protein RAD-23 [Caenorhabditis elegans]
gi|194686136|emb|CAA93780.2| Protein RAD-23 [Caenorhabditis elegans]
Length = 323
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 53/199 (26%), Positives = 86/199 (43%), Gaps = 29/199 (14%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
+ +T +TL +F + + T+ VK + +G D+Y Q LI+NGK+L D +
Sbjct: 3 LSVTFRTLTQVNFNLELNEDQTIAEVKALVASEKG-DDYAPELQKLIYNGKILDDSVKVG 61
Query: 61 DNKVSEDGFLVVMLSKSKTLGSAGASSAQPAHTTPPTTAPSSNSTPPQEASVPPPAPTPS 120
+ F+VVMLSK K + P+ T P + P P P
Sbjct: 62 EVGFDSSKFVVVMLSKRKV------TEVAPSSTVATAAEPVPVAAAPASNPAPAADVAPE 115
Query: 121 IPASNVTSNVTAANANSDTYGQAASNLVAGNDLEQTIQQIMDMGGGTWDKETVTRALQAA 180
A +T ++ E+ + I MG +D+E AL+AA
Sbjct: 116 AAAPAEAEALT-------------------DEQEENVLAITGMG---YDREQTIAALRAA 153
Query: 181 YNNPERAVDYLYSGIPETA 199
+ NP+RAV++L +G+P+ A
Sbjct: 154 FWNPDRAVEFLLNGLPDDA 172
>gi|401883698|gb|EJT47893.1| hypothetical protein A1Q1_03199 [Trichosporon asahii var. asahii
CBS 2479]
Length = 348
Score = 57.8 bits (138), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 34/90 (37%), Positives = 50/90 (55%), Gaps = 15/90 (16%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNG---------- 50
MK+T KT+ F I S+T+ +KK I++ Q ++P Q LI++G
Sbjct: 1 MKITFKTVTNKLFSIDADESETIGGLKKKIQEAQ---SFPAELQKLIYSGGYQCSAQTNI 57
Query: 51 --KVLKDETTLADNKVSEDGFLVVMLSKSK 78
K+LKD+ T+ D K+ E FLVVM+SK K
Sbjct: 58 PGKILKDDATVGDLKIKEKDFLVVMVSKPK 87
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 24/51 (47%), Positives = 37/51 (72%), Gaps = 4/51 (7%)
Query: 148 VAGNDLEQTIQQIMDMGGGTWDKETVTRALQAAYNNPERAVDYLYSG-IPE 197
V G L+ I +++MG ++++ V +AL+A+YNNP+RAV+YL SG IPE
Sbjct: 98 VTGAALQNAIDGMVEMG---FERDQVVKALRASYNNPDRAVEYLMSGNIPE 145
>gi|301754679|ref|XP_002913151.1| PREDICTED: ubiquitin-like [Ailuropoda melanoleuca]
Length = 80
Score = 57.8 bits (138), Expect = 5e-06, Method: Composition-based stats.
Identities = 31/74 (41%), Positives = 45/74 (60%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D Q K+ P QQ LI GK L+D TL+
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKQDKEGIPPDQQRLIFAGKQLEDGRTLS 60
Query: 61 DNKVSEDGFLVVML 74
D + ++ L ++L
Sbjct: 61 DYNIQKESTLHLVL 74
>gi|281343818|gb|EFB19402.1| hypothetical protein PANDA_000950 [Ailuropoda melanoleuca]
Length = 79
Score = 57.8 bits (138), Expect = 5e-06, Method: Composition-based stats.
Identities = 31/74 (41%), Positives = 45/74 (60%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D Q K+ P QQ LI GK L+D TL+
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKQDKEGIPPDQQRLIFAGKQLEDGRTLS 60
Query: 61 DNKVSEDGFLVVML 74
D + ++ L ++L
Sbjct: 61 DYNIQKESTLHLVL 74
>gi|210076049|ref|XP_002143115.1| YALI0F18403p [Yarrowia lipolytica]
gi|199424967|emb|CAR65204.1| YALI0F18403p [Yarrowia lipolytica CLIB122]
Length = 77
Score = 57.4 bits (137), Expect = 6e-06, Method: Composition-based stats.
Identities = 29/75 (38%), Positives = 47/75 (62%), Gaps = 3/75 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
MK+ +KTL G E+ V+P D + +K+ IE+++G P QQ L+ GK L+DE T+A
Sbjct: 1 MKIKIKTLIGKEIEMDVEPEDQISVLKEKIEELEG---IPPAQQRLVFTGKQLQDEKTIA 57
Query: 61 DNKVSEDGFLVVMLS 75
+NK+ L ++L+
Sbjct: 58 ENKIEAGASLHLVLA 72
>gi|363735451|ref|XP_003641561.1| PREDICTED: LOW QUALITY PROTEIN: AN1-type zinc finger and
ubiquitin domain-containing protein 1 [Gallus gallus]
Length = 735
Score = 57.4 bits (137), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 47/75 (62%), Gaps = 3/75 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M+L ++TL G+ FE+RV P +TV++VK I+ ++G P QQ LI N LKD+ L
Sbjct: 28 MELFIETLTGTCFELRVSPFETVISVKAKIQRLEG---IPISQQHLIWNNVELKDDYCLN 84
Query: 61 DNKVSEDGFLVVMLS 75
D +SE L ++L+
Sbjct: 85 DYNISEGCTLKLVLA 99
>gi|380094252|emb|CCC08469.1| putative RAD23 protein [Sordaria macrospora k-hell]
Length = 423
Score = 57.4 bits (137), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 37/112 (33%), Positives = 57/112 (50%), Gaps = 26/112 (23%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
MK+T K LK F + ++P++T+ VK I + +G + Q LI++GK+LKDE T+
Sbjct: 1 MKVTFKDLKQQKFTLEIEPTETIAKVKAKISEERG---WAPELQKLIYSGKILKDEETVE 57
Query: 61 DNKVSEDGFLVVMLSKSKTLGSAGASSAQPAHTTPPTTAPSSNSTPPQEASV 112
K+ E GF+V +++K P TTAP P E+S
Sbjct: 58 SYKIEEKGFVVCVVNK------------------PKTTAPK-----PAESSS 86
Score = 47.0 bits (110), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 30/43 (69%)
Query: 154 EQTIQQIMDMGGGTWDKETVTRALQAAYNNPERAVDYLYSGIP 196
EQ + I +M +++ + A++AAYNNPERAV+YL +GIP
Sbjct: 177 EQRAEAIANMEAMGFERSQIDAAMRAAYNNPERAVEYLLNGIP 219
>gi|170671962|ref|NP_001116289.1| uncharacterized protein LOC100144290 [Xenopus (Silurana)
tropicalis]
gi|165971463|gb|AAI58158.1| LOC100144290 protein [Xenopus (Silurana) tropicalis]
Length = 255
Score = 57.4 bits (137), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 48/75 (64%), Gaps = 3/75 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M+L ++TL G+ FE+RV P +TV +VK I+ ++G P QQ LI N L+DE +L+
Sbjct: 28 MELFIETLTGTCFELRVSPYETVASVKSKIQRLEG---IPVAQQHLIWNNMELEDECSLS 84
Query: 61 DNKVSEDGFLVVMLS 75
D +SE L ++L+
Sbjct: 85 DYNISEGCTLKMVLA 99
>gi|284044814|ref|YP_003395154.1| ubiquitin [Conexibacter woesei DSM 14684]
gi|283949035|gb|ADB51779.1| ubiquitin [Conexibacter woesei DSM 14684]
Length = 360
Score = 57.0 bits (136), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 45/74 (60%), Gaps = 3/74 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSD++ VK+ I+D K+ P +Q LI+ G+VL+D TLA
Sbjct: 26 MQIFVKTLTGKTITLEVEPSDSIEQVKQKIQD---KEGIPPDRQRLIYAGRVLEDGRTLA 82
Query: 61 DNKVSEDGFLVVML 74
D + + L + L
Sbjct: 83 DYNIQRESTLHLFL 96
>gi|317107865|dbj|BAJ53744.1| nucleotide excision repair protein [Marsupenaeus japonicus]
Length = 382
Score = 57.0 bits (136), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 47/74 (63%), Gaps = 1/74 (1%)
Query: 3 LTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADN 62
LT+K L+ F + ++ S TV A+K+ +E +G D YP Q LI+ GK+ +D+TTL
Sbjct: 4 LTLKNLQQQTFTVEIELSATVKALKEKVEKEKGGD-YPAVGQKLIYAGKIPQDDTTLESY 62
Query: 63 KVSEDGFLVVMLSK 76
+ + FLV+M++K
Sbjct: 63 NIDDKKFLVIMVTK 76
>gi|443893900|dbj|GAC71356.1| small Nuclear ribonucleoprotein splicing factor [Pseudozyma
antarctica T-34]
Length = 176
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/73 (42%), Positives = 48/73 (65%), Gaps = 3/73 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
MKL +K+L G +F + + SDT+ A+K+ I+ QG + P Q++ I +GK+L D+ T+A
Sbjct: 1 MKLLIKSLAGGNFHLDAELSDTIGAIKQKIQAEQG--HKPEWQKI-IFSGKILTDDKTVA 57
Query: 61 DNKVSEDGFLVVM 73
D + E FLVVM
Sbjct: 58 DCNIKEKDFLVVM 70
>gi|363746935|ref|XP_003643857.1| PREDICTED: UV excision repair protein RAD23 homolog A-like [Gallus
gallus]
Length = 214
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/89 (37%), Positives = 47/89 (52%), Gaps = 10/89 (11%)
Query: 148 VAGNDLEQTIQQIMDMGGGTWDKETVTRALQAAYNNPERAVDYLYSGIPETAEVAVPVAH 207
V G++ E + +IM MG +++E V AL+A+YNNP RAV+YL +GIP + E P
Sbjct: 11 VTGSEYETMLTEIMSMG---YERERVVAALRASYNNPHRAVEYLLTGIPGSPEAERPPVQ 67
Query: 208 FPASQAAETGAAGAAPVSGVPNSSPLNMF 236
E+ A V G P +PL
Sbjct: 68 -------ESRAPEQPQVEGQPGENPLEFL 89
>gi|396477678|ref|XP_003840335.1| predicted protein [Leptosphaeria maculans JN3]
gi|312216907|emb|CBX96856.1| predicted protein [Leptosphaeria maculans JN3]
Length = 72
Score = 56.6 bits (135), Expect = 1e-05, Method: Composition-based stats.
Identities = 29/76 (38%), Positives = 46/76 (60%), Gaps = 6/76 (7%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
MK+T K LK + F I+ +P++T+ A +Q + QQ LI++GK+L+D T+
Sbjct: 1 MKITFKDLKQNKFVIQAEPTETLKA------KIQADKGWEVPQQKLIYSGKILQDAHTVE 54
Query: 61 DNKVSEDGFLVVMLSK 76
K+ E GF+V M+SK
Sbjct: 55 SYKIEEKGFIVCMVSK 70
>gi|214866|gb|AAB04151.1| ubiquitin-like fusion protein [Xenopus laevis]
Length = 693
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 47/75 (62%), Gaps = 3/75 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M+L ++TL G+ FE+RV P +TV +VK I+ ++G P QQ LI N L+DE +L+
Sbjct: 28 MELFIETLTGTCFELRVSPYETVTSVKSKIQRLEG---IPVAQQHLIRNNMELEDECSLS 84
Query: 61 DNKVSEDGFLVVMLS 75
+SE L ++L+
Sbjct: 85 GYNISEGCTLKMVLA 99
>gi|327281434|ref|XP_003225453.1| PREDICTED: AN1-type zinc finger and ubiquitin domain-containing
protein 1-like [Anolis carolinensis]
Length = 711
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 49/75 (65%), Gaps = 3/75 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ ++TL G+ FE+RV P +TV++VK I+ ++G P QQ LI N + L+D+ L
Sbjct: 28 MEIIIETLTGTCFELRVSPFETVISVKSKIQRLEG---IPVSQQHLIWNDEELEDDYGLN 84
Query: 61 DNKVSEDGFLVVMLS 75
D ++SE L ++L+
Sbjct: 85 DYEISEGCTLKLILA 99
>gi|403268703|ref|XP_003926408.1| PREDICTED: NEDD8-like [Saimiri boliviensis boliviensis]
Length = 81
Score = 55.8 bits (133), Expect = 2e-05, Method: Composition-based stats.
Identities = 30/75 (40%), Positives = 45/75 (60%), Gaps = 3/75 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M + VKTL G EI ++P+D V +K+ +E+ K+ P QQ LI+NGK + DE T A
Sbjct: 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEE---KEGIPPQQQRLIYNGKQMNDEKTAA 57
Query: 61 DNKVSEDGFLVVMLS 75
D K+ L ++L+
Sbjct: 58 DYKILGGSVLHLVLA 72
>gi|225705166|gb|ACO08429.1| Ubiquitin [Oncorhynchus mykiss]
Length = 156
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/95 (36%), Positives = 52/95 (54%), Gaps = 7/95 (7%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D +G P GQQ LI GK L+D TL+
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPGQQRLIFAGKQLEDGRTLS 57
Query: 61 DNKVSEDGFLVVMLSKSKTLGSAGASSAQPAHTTP 95
D + ++ L ++L L + ++TTP
Sbjct: 58 DYNIQKESTLRLVLR----LRGGAKKRKERSYTTP 88
>gi|221221770|gb|ACM09546.1| NEDD8 precursor [Salmo salar]
Length = 88
Score = 55.8 bits (133), Expect = 2e-05, Method: Composition-based stats.
Identities = 29/75 (38%), Positives = 45/75 (60%), Gaps = 3/75 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M + VKTL G EI ++P+D V +K+ +E+ K+ P QQ LI++GK + DE T A
Sbjct: 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEE---KEGIPPQQQRLIYSGKQMNDEKTAA 57
Query: 61 DNKVSEDGFLVVMLS 75
D K+ L ++L+
Sbjct: 58 DYKIQRGSVLHLVLA 72
>gi|298713601|emb|CBJ27129.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 453
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 43/78 (55%), Gaps = 3/78 (3%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
+ ++KTL G IR PS+TV+ VKK ++D QG PC QQ +I+ G+ D+ TL
Sbjct: 158 ISFSIKTLTGKQHTIRAFPSETVLDVKKKVQDTQG---IPCEQQRIIYAGQQTSDDRTLR 214
Query: 61 DNKVSEDGFLVVMLSKSK 78
D + ++LS K
Sbjct: 215 DCNIRNGSVAHLVLSLRK 232
>gi|71416587|ref|XP_810308.1| UV excision repair RAD23-like protein [Trypanosoma cruzi strain CL
Brener]
gi|70874820|gb|EAN88457.1| UV excision repair RAD23-like protein, putative [Trypanosoma cruzi]
Length = 361
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 55/204 (26%), Positives = 95/204 (46%), Gaps = 20/204 (9%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
MK+ ++++ GS V P + VKK +ED D+ L +NG + ++ T+
Sbjct: 1 MKIVLRSIVGSEQVREVTPDTNIETVKKFLEDEYNTDSL-----RLCYNGAIPENSKTMT 55
Query: 61 DNKVSEDGFLVVMLSKSKTLGSAGASSAQPAHTTPPTTAPSSNSTPPQ-------EASVP 113
+ V E+ ++ +K + A+PA + PP +++S P E ++
Sbjct: 56 ELGVQENAVFIIAGNKR----NKNKPQAKPATSVPPPQTKTNSSFEPTSVGHGQGEGAIT 111
Query: 114 PPAPTPSIPASNVTSNVTAANANSDTYGQAASNLVAGNDLEQT-IQQIMDMGGGTWDKET 172
PA T ++ A A S +A + ++ T + I+ MG D+E
Sbjct: 112 EPA-TSGAGGASGGITEPQQGAEPPPSEAAPSQGLALHGVDPTLVDNIIAMG--FEDREQ 168
Query: 173 VTRALQAAYNNPERAVDYLYSGIP 196
V AL+AAY NP+RAV++L +GIP
Sbjct: 169 VALALRAAYMNPDRAVEFLCTGIP 192
>gi|334313731|ref|XP_003339943.1| PREDICTED: AN1-type zinc finger and ubiquitin domain-containing
protein 1 [Monodelphis domestica]
Length = 741
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 47/75 (62%), Gaps = 3/75 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M+L ++TL G+ FE+RV P +TV++VK I+ ++G P QQ LI N L+D+ L
Sbjct: 54 MELFIETLTGTCFELRVSPFETVISVKAKIQRLEG---IPICQQHLIWNNMELEDDYCLN 110
Query: 61 DNKVSEDGFLVVMLS 75
D +SE L ++L+
Sbjct: 111 DYNISEGCTLKLVLA 125
>gi|147906437|ref|NP_001079636.1| AN1-type zinc finger protein 4-like [Xenopus laevis]
gi|28302328|gb|AAH46649.1| MGC52567 protein [Xenopus laevis]
Length = 693
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 47/75 (62%), Gaps = 3/75 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M+L ++TL G+ FE+RV P +TV +VK I+ ++G P QQ LI N L+DE +L+
Sbjct: 28 MELFIETLTGTCFELRVSPHETVASVKSKIQRLEG---IPVAQQHLIWNNMELEDECSLS 84
Query: 61 DNKVSEDGFLVVMLS 75
+SE L ++L+
Sbjct: 85 GYNISEGCTLKMVLA 99
>gi|395501173|ref|XP_003754972.1| PREDICTED: LOW QUALITY PROTEIN: AN1-type zinc finger protein 4
[Sarcophilus harrisii]
Length = 760
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 47/75 (62%), Gaps = 3/75 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M+L ++TL G+ FE+RV P +TV++VK I+ ++G P QQ LI N L+D+ L
Sbjct: 54 MELFIETLTGTCFELRVSPFETVISVKAKIQRLEG---IPICQQHLIWNNMELEDDYCLN 110
Query: 61 DNKVSEDGFLVVMLS 75
D +SE L ++L+
Sbjct: 111 DYNISEGCTLKLVLA 125
>gi|403300123|ref|XP_003940807.1| PREDICTED: uncharacterized protein LOC101032377 [Saimiri
boliviensis boliviensis]
Length = 458
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 44/74 (59%), Gaps = 3/74 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D K+ P QQ LI GK L+D TL+
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLS 57
Query: 61 DNKVSEDGFLVVML 74
D + ++ L ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|209732614|gb|ACI67176.1| NEDD8 precursor [Salmo salar]
Length = 88
Score = 55.5 bits (132), Expect = 3e-05, Method: Composition-based stats.
Identities = 29/75 (38%), Positives = 45/75 (60%), Gaps = 3/75 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M + VKTL G EI ++P+D V +K+ +E+ K+ P QQ LI++GK + DE T A
Sbjct: 1 MPIKVKTLTGKEIEIDIEPTDKVERIKERVEE---KEGIPPQQQRLIYSGKQMDDEKTAA 57
Query: 61 DNKVSEDGFLVVMLS 75
D K+ L ++L+
Sbjct: 58 DYKIQGGSVLHLVLA 72
>gi|321117100|ref|NP_001189400.1| AN1-type zinc finger and ubiquitin domain-containing protein-like
[Danio rerio]
Length = 673
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 47/75 (62%), Gaps = 3/75 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M+L ++TL G+ F++RV P + V++VK I+ ++G P QQ LI NG L+DE L
Sbjct: 28 MELFIETLTGTCFQLRVSPFEQVVSVKAKIQRLEG---IPVSQQHLIWNGMELEDEYCLH 84
Query: 61 DNKVSEDGFLVVMLS 75
D ++E L ++L+
Sbjct: 85 DYSITEGCTLKLVLA 99
>gi|333466063|gb|AEF33800.1| Ubi-gD2tr [synthetic construct]
Length = 383
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 34/91 (37%), Positives = 52/91 (57%), Gaps = 6/91 (6%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D K+ P QQ LI GK L+D TL+
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLS 57
Query: 61 DNKVSEDGFLVVMLSKSKTLGSAGASSAQPA 91
D + ++ L ++L + G+A + A P+
Sbjct: 58 DYNIQKESTLHLVL---RLRGAAKYALADPS 85
>gi|326437416|gb|EGD82986.1| neural cell expressed [Salpingoeca sp. ATCC 50818]
Length = 79
Score = 55.1 bits (131), Expect = 3e-05, Method: Composition-based stats.
Identities = 29/64 (45%), Positives = 40/64 (62%), Gaps = 3/64 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G E+ V+P DT++ VK+ +E+ QG P QQ LI+ GK L D TL
Sbjct: 1 MQIKVKTLTGREIELDVEPDDTMLQVKEKLEEKQG---IPPEQQRLIYAGKPLNDSKTLK 57
Query: 61 DNKV 64
D K+
Sbjct: 58 DCKI 61
>gi|167522036|ref|XP_001745356.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163776314|gb|EDQ89934.1| predicted protein [Monosiga brevicollis MX1]
Length = 320
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/75 (42%), Positives = 43/75 (57%), Gaps = 1/75 (1%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
MK+T+KT+K F++++ T+ VK IE +G D YP +I+ GKVL D TLA
Sbjct: 1 MKVTIKTIKDGTFDLQMGDDATIGEVKAAIEQSKG-DKYPKDGLKVIYQGKVLGDSDTLA 59
Query: 61 DNKVSEDGFLVVMLS 75
E FLVVM S
Sbjct: 60 SANFQEKDFLVVMAS 74
>gi|225707542|gb|ACO09617.1| NEDD8 precursor [Osmerus mordax]
Length = 88
Score = 55.1 bits (131), Expect = 3e-05, Method: Composition-based stats.
Identities = 29/75 (38%), Positives = 45/75 (60%), Gaps = 3/75 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M + VKTL G EI ++P+D V +K+ +E+ K+ P QQ LI++GK + DE T A
Sbjct: 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEE---KEGIPPQQQRLIYSGKQMNDEKTAA 57
Query: 61 DNKVSEDGFLVVMLS 75
D K+ L ++L+
Sbjct: 58 DYKIQGGSVLHLVLA 72
>gi|238231801|ref|NP_001154087.1| neural precursor cell expressed, developmentally down-regulated 8
[Oncorhynchus mykiss]
gi|209734760|gb|ACI68249.1| NEDD8 precursor [Salmo salar]
gi|225703950|gb|ACO07821.1| NEDD8 precursor [Oncorhynchus mykiss]
gi|303658101|gb|ADM15910.1| NEDD8 precursor [Salmo salar]
Length = 88
Score = 55.1 bits (131), Expect = 3e-05, Method: Composition-based stats.
Identities = 29/75 (38%), Positives = 45/75 (60%), Gaps = 3/75 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M + VKTL G EI ++P+D V +K+ +E+ K+ P QQ LI++GK + DE T A
Sbjct: 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEE---KEGIPPQQQRLIYSGKQMNDEKTAA 57
Query: 61 DNKVSEDGFLVVMLS 75
D K+ L ++L+
Sbjct: 58 DYKIQGGSVLHLVLA 72
>gi|209731940|gb|ACI66839.1| NEDD8 precursor [Salmo salar]
Length = 88
Score = 55.1 bits (131), Expect = 3e-05, Method: Composition-based stats.
Identities = 29/75 (38%), Positives = 45/75 (60%), Gaps = 3/75 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M + VKTL G EI ++P+D V +K+ +E+ K+ P QQ LI++GK + DE T A
Sbjct: 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEE---KEGIPPQQQRLIYSGKQMNDEKTAA 57
Query: 61 DNKVSEDGFLVVMLS 75
D K+ L ++L+
Sbjct: 58 DYKIQGGSVLHLVLA 72
>gi|308486129|ref|XP_003105262.1| hypothetical protein CRE_21168 [Caenorhabditis remanei]
gi|308256770|gb|EFP00723.1| hypothetical protein CRE_21168 [Caenorhabditis remanei]
Length = 171
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 48/75 (64%), Gaps = 3/75 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M + V L G +FEI+V+PSDTV+ VK+ I + +G Y QQ+L+ + + DE T++
Sbjct: 86 MHINVNLLDGRNFEIKVKPSDTVLHVKRKIHEARGFHIY---QQILLFRRQGMADEQTVS 142
Query: 61 DNKVSEDGFLVVMLS 75
D ++E G + ++L+
Sbjct: 143 DVGITEGGVVHMLLN 157
>gi|387017250|gb|AFJ50743.1| NEDD8 [Crotalus adamanteus]
Length = 78
Score = 55.1 bits (131), Expect = 4e-05, Method: Composition-based stats.
Identities = 29/75 (38%), Positives = 45/75 (60%), Gaps = 3/75 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M + VKTL G EI ++P+D V +K+ +E+ K+ P QQ LI++GK + DE T A
Sbjct: 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEE---KEGIPPQQQRLIYSGKQMNDEKTAA 57
Query: 61 DNKVSEDGFLVVMLS 75
D K+ L ++L+
Sbjct: 58 DYKIQGGSVLHLVLA 72
>gi|123454697|ref|XP_001315100.1| polyubiquitin [Trichomonas vaginalis G3]
gi|123479152|ref|XP_001322735.1| polyubiquitin [Trichomonas vaginalis G3]
gi|123479160|ref|XP_001322739.1| polyubiquitin [Trichomonas vaginalis G3]
gi|121897766|gb|EAY02877.1| polyubiquitin, putative [Trichomonas vaginalis G3]
gi|121905587|gb|EAY10512.1| polyubiquitin, putative [Trichomonas vaginalis G3]
gi|121905591|gb|EAY10516.1| polyubiquitin, putative [Trichomonas vaginalis G3]
Length = 77
Score = 54.7 bits (130), Expect = 4e-05, Method: Composition-based stats.
Identities = 30/74 (40%), Positives = 43/74 (58%), Gaps = 3/74 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G H + V+P+D + VK I+D K+ P QQ LI GK L+D TL
Sbjct: 1 MQIFVKTLTGKHITLEVEPTDRIEDVKAKIQD---KEGIPPDQQRLIFAGKQLEDGNTLQ 57
Query: 61 DNKVSEDGFLVVML 74
D + +D L ++L
Sbjct: 58 DYSIQKDSTLHLVL 71
>gi|62858961|ref|NP_001016973.1| neural precursor cell expressed, developmentally down-regulated 8
[Xenopus (Silurana) tropicalis]
gi|89271908|emb|CAJ82981.1| neural precursor cell expressed, developmentally down-regulated 8
[Xenopus (Silurana) tropicalis]
gi|115291965|gb|AAI22003.1| LOC549727 protein [Xenopus (Silurana) tropicalis]
gi|126632065|gb|AAI33806.1| Unknown (protein for MGC:161083) [Xenopus laevis]
Length = 77
Score = 54.7 bits (130), Expect = 4e-05, Method: Composition-based stats.
Identities = 29/75 (38%), Positives = 45/75 (60%), Gaps = 3/75 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M + VKTL G EI ++P+D V +K+ +E+ K+ P QQ LI++GK + DE T A
Sbjct: 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEE---KEGIPPQQQRLIYSGKQMNDEKTAA 57
Query: 61 DNKVSEDGFLVVMLS 75
D K+ L ++L+
Sbjct: 58 DYKIQGGSVLHLVLA 72
>gi|299117286|emb|CBN75246.1| rad23b protein [Ectocarpus siliculosus]
Length = 341
Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 47/138 (34%), Positives = 62/138 (44%), Gaps = 15/138 (10%)
Query: 3 LTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADN 62
LTVKTLKG F I V + VK I +V+G D G Q+LI GK LKD +LA
Sbjct: 5 LTVKTLKGEVFRIDVAEESVMSDVKTKISEVRGHDP---GTQVLICGGKTLKDGDSLA-G 60
Query: 63 KVSEDGFLVVMLSKSKTLGSAGASSAQPAHTTPPTTA--PSSNSTPPQEASVPPPAPTPS 120
V+ GFLV+M+ A + PA+ T P +T A+ + S
Sbjct: 61 SVAAGGFLVLMVK---------ALAIDPANVEMLTAMGFPEDQATAALRAAFNDVSRAAS 111
Query: 121 IPASNVTSNVTAANANSD 138
+ NV A + SD
Sbjct: 112 YLMEGIPDNVGAGSGGSD 129
>gi|225715060|gb|ACO13376.1| NEDD8 precursor [Esox lucius]
Length = 88
Score = 54.7 bits (130), Expect = 5e-05, Method: Composition-based stats.
Identities = 29/75 (38%), Positives = 45/75 (60%), Gaps = 3/75 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M + VKTL G EI ++P+D V +K+ +E+ K+ P QQ LI++GK + DE T A
Sbjct: 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEE---KEGIPPQQQRLIYSGKQMNDEKTAA 57
Query: 61 DNKVSEDGFLVVMLS 75
D K+ L ++L+
Sbjct: 58 DYKIQGGSVLHLVLA 72
>gi|193683464|ref|XP_001946679.1| PREDICTED: hypothetical protein LOC100168628 [Acyrthosiphon
pisum]
Length = 477
Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 47/75 (62%), Gaps = 3/75 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
+ LT++TL G+ FEI V P+D + ++K I+ V+G P QQ L+ K+L D TT+A
Sbjct: 21 ISLTIETLTGTAFEITVCPTDYISSLKSRIQRVEG---IPVNQQHLLLGEKILSDHTTIA 77
Query: 61 DNKVSEDGFLVVMLS 75
+N + + L ++LS
Sbjct: 78 NNNLHDGSTLRLVLS 92
>gi|432920202|ref|XP_004079887.1| PREDICTED: NEDD8-like [Oryzias latipes]
Length = 89
Score = 54.7 bits (130), Expect = 5e-05, Method: Composition-based stats.
Identities = 29/75 (38%), Positives = 45/75 (60%), Gaps = 3/75 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M + VKTL G EI ++P+D V +K+ +E+ K+ P QQ LI++GK + DE T A
Sbjct: 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEE---KEGIPPQQQRLIYSGKQMNDEKTAA 57
Query: 61 DNKVSEDGFLVVMLS 75
D K+ L ++L+
Sbjct: 58 DYKIQGGSVLHLVLA 72
>gi|432914397|ref|XP_004079092.1| PREDICTED: NEDD8-like [Oryzias latipes]
Length = 89
Score = 54.7 bits (130), Expect = 5e-05, Method: Composition-based stats.
Identities = 29/75 (38%), Positives = 45/75 (60%), Gaps = 3/75 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M + VKTL G EI ++P+D V +K+ +E+ K+ P QQ LI++GK + DE T A
Sbjct: 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEE---KEGIPPQQQRLIYSGKQMNDEKTAA 57
Query: 61 DNKVSEDGFLVVMLS 75
D K+ L ++L+
Sbjct: 58 DYKIQGGSVLHLVLA 72
>gi|142934400|gb|ABO92967.1| NEDD8 [Danio rerio]
gi|169146053|emb|CAQ14646.1| novel ubiquitin-like protein [Danio rerio]
Length = 80
Score = 54.3 bits (129), Expect = 5e-05, Method: Composition-based stats.
Identities = 29/75 (38%), Positives = 45/75 (60%), Gaps = 3/75 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M + VKTL G EI ++P+D V +K+ +E+ K+ P QQ LI++GK + DE T A
Sbjct: 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEE---KEGIPPQQQRLIYSGKQMNDEKTAA 57
Query: 61 DNKVSEDGFLVVMLS 75
D K+ L ++L+
Sbjct: 58 DYKIQGGSVLHLVLA 72
>gi|340375318|ref|XP_003386183.1| PREDICTED: polyubiquitin-like [Amphimedon queenslandica]
Length = 968
Score = 54.3 bits (129), Expect = 5e-05, Method: Composition-based stats.
Identities = 30/74 (40%), Positives = 45/74 (60%), Gaps = 3/74 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D K+ P QQ LI GK+L+D TL+
Sbjct: 153 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQD---KEGIPPDQQRLIFAGKILEDGRTLS 209
Query: 61 DNKVSEDGFLVVML 74
D + ++ L ++L
Sbjct: 210 DYNIQKESTLHLVL 223
Score = 52.4 bits (124), Expect = 2e-04, Method: Composition-based stats.
Identities = 29/64 (45%), Positives = 39/64 (60%), Gaps = 3/64 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D K+ P QQ LI GKVL D+ TL+
Sbjct: 628 MQIFVKTLTGRTITLEVEPSDTIENVKAKIQD---KEGIPPDQQRLIFAGKVLVDDRTLS 684
Query: 61 DNKV 64
D +
Sbjct: 685 DYNI 688
Score = 50.8 bits (120), Expect = 7e-04, Method: Composition-based stats.
Identities = 28/76 (36%), Positives = 45/76 (59%), Gaps = 3/76 (3%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ +K I+D K+ P QQ LI G+ L+D TL+
Sbjct: 77 MQIFVKTLTGKTITLEVEPSDTMENIKAKIQD---KEGIPPDQQRLIFAGRQLEDGRTLS 133
Query: 61 DNKVSEDGFLVVMLSK 76
D + ++ L ++L +
Sbjct: 134 DYNIQKESTLHLVLRR 149
Score = 47.8 bits (112), Expect = 0.006, Method: Composition-based stats.
Identities = 27/74 (36%), Positives = 44/74 (59%), Gaps = 3/74 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++++K L G + V+ SDTV +VK+ I+D K+ P QQ LI GK L++ TL+
Sbjct: 1 MRISIKPLVGESLSLEVEASDTVESVKEKIQD---KEGIPPDQQRLIFVGKQLENGRTLS 57
Query: 61 DNKVSEDGFLVVML 74
D + + L ++L
Sbjct: 58 DYNIQNESTLHLVL 71
Score = 46.6 bits (109), Expect = 0.011, Method: Composition-based stats.
Identities = 28/67 (41%), Positives = 39/67 (58%), Gaps = 6/67 (8%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKD---ET 57
M + VKTL G FE+ V +T+ VK IE+ G PC QQ +I++G+ L+D E
Sbjct: 541 MTIYVKTLTGKTFELNVIYCNTIGNVKTKIEETGG---IPCNQQKIIYDGRQLEDDYIED 597
Query: 58 TLADNKV 64
TL NK+
Sbjct: 598 TLLPNKI 604
>gi|346470233|gb|AEO34961.1| hypothetical protein [Amblyomma maculatum]
Length = 83
Score = 54.3 bits (129), Expect = 5e-05, Method: Composition-based stats.
Identities = 29/75 (38%), Positives = 45/75 (60%), Gaps = 3/75 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M + VKTL G EI ++P+D V +K+ +E+ K+ P QQ LI +GK + D+ T A
Sbjct: 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEE---KEGIPPAQQRLIFSGKQMNDDKTAA 57
Query: 61 DNKVSEDGFLVVMLS 75
D KV+ L ++L+
Sbjct: 58 DYKVTGGSVLHLVLA 72
>gi|229368036|gb|ACQ58998.1| NEDD8 precursor [Anoplopoma fimbria]
Length = 91
Score = 54.3 bits (129), Expect = 5e-05, Method: Composition-based stats.
Identities = 29/75 (38%), Positives = 45/75 (60%), Gaps = 3/75 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M + VKTL G EI ++P+D V +K+ +E+ K+ P QQ LI++GK + DE T A
Sbjct: 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEE---KEGIPPQQQRLIYSGKQMNDEKTAA 57
Query: 61 DNKVSEDGFLVVMLS 75
D K+ L ++L+
Sbjct: 58 DYKIQGGSVLHLVLA 72
>gi|340523109|ref|NP_958478.2| neural precursor cell expressed, developmentally down-regulated 8
[Danio rerio]
Length = 89
Score = 54.3 bits (129), Expect = 5e-05, Method: Composition-based stats.
Identities = 29/75 (38%), Positives = 45/75 (60%), Gaps = 3/75 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M + VKTL G EI ++P+D V +K+ +E+ K+ P QQ LI++GK + DE T A
Sbjct: 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEE---KEGIPPQQQRLIYSGKQMNDEKTAA 57
Query: 61 DNKVSEDGFLVVMLS 75
D K+ L ++L+
Sbjct: 58 DYKIQGGSVLHLVLA 72
>gi|405965652|gb|EKC31014.1| AN1-type zinc finger and ubiquitin domain-containing protein 1
[Crassostrea gigas]
Length = 624
Score = 54.3 bits (129), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 46/75 (61%), Gaps = 3/75 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M+L ++TL G+ FE+RV P +T+M+VK I+ ++G P GQQ LI L+D+ L
Sbjct: 1 MELYIETLTGTFFELRVSPFETIMSVKAKIQRLEG---IPIGQQHLIWQSIELEDDYCLH 57
Query: 61 DNKVSEDGFLVVMLS 75
D + + L ++L+
Sbjct: 58 DYSIHDGATLKLVLA 72
>gi|209736560|gb|ACI69149.1| NEDD8 precursor [Salmo salar]
Length = 89
Score = 54.3 bits (129), Expect = 6e-05, Method: Composition-based stats.
Identities = 29/75 (38%), Positives = 45/75 (60%), Gaps = 3/75 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M + VKTL G EI ++P+D V +K+ +E+ K+ P QQ LI++GK + DE T A
Sbjct: 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEE---KEGIPPQQQRLIYSGKQMNDEKTAA 57
Query: 61 DNKVSEDGFLVVMLS 75
D K+ L ++L+
Sbjct: 58 DYKIQGGSVLHLVLA 72
>gi|449017230|dbj|BAM80632.1| ubiquitin with short C-terminal extension [Cyanidioschyzon merolae
strain 10D]
Length = 134
Score = 54.3 bits (129), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 37/114 (32%), Positives = 57/114 (50%), Gaps = 7/114 (6%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D K+ P QQ LI GK L+D TL+
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKSKIQD---KEGIPPDQQRLIFAGKQLEDGRTLS 57
Query: 61 DNKVSEDGFLVVMLSKS----KTLGSAGASSAQPAHTTPPTTAPSSNSTPPQEA 110
D + ++ L ++L + + G + + + PTT +S EA
Sbjct: 58 DYNIQKESTLHLVLRLRGGYIRVVVEDGEGAVSTGYASYPTTTTMGSSAETAEA 111
>gi|209730394|gb|ACI66066.1| NEDD8 precursor [Salmo salar]
Length = 89
Score = 54.3 bits (129), Expect = 6e-05, Method: Composition-based stats.
Identities = 29/75 (38%), Positives = 45/75 (60%), Gaps = 3/75 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M + VKTL G EI ++P+D V +K+ +E+ K+ P QQ LI++GK + DE T A
Sbjct: 1 MLIKVKTLTGKEIEIDIEPTDKVEGIKEQVEE---KEGIPPQQQRLIYSGKQMNDEKTAA 57
Query: 61 DNKVSEDGFLVVMLS 75
D K+ L ++L+
Sbjct: 58 DYKIQGGSVLHLVLA 72
>gi|343459119|gb|AEM37718.1| novel ubiquitin-like protein [Epinephelus bruneus]
Length = 90
Score = 53.9 bits (128), Expect = 6e-05, Method: Composition-based stats.
Identities = 33/85 (38%), Positives = 48/85 (56%), Gaps = 5/85 (5%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M + VKTL G EI ++P+D V +K+ +E+ K+ P QQ LI++GK + DE T A
Sbjct: 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEE---KEGIPPQQQRLIYSGKQMNDEKTAA 57
Query: 61 DNKVSEDGF--LVVMLSKSKTLGSA 83
D K+ LV+ L TL S+
Sbjct: 58 DYKIQGGSVLHLVLALRGGSTLHSS 82
>gi|344298662|ref|XP_003421010.1| PREDICTED: NEDD8-like [Loxodonta africana]
Length = 81
Score = 53.9 bits (128), Expect = 7e-05, Method: Composition-based stats.
Identities = 29/75 (38%), Positives = 45/75 (60%), Gaps = 3/75 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M + VKTL G EI ++P+D V +K+ +E+ K+ P QQ LI++GK + DE T A
Sbjct: 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEE---KEGIPPQQQRLIYSGKQMNDEKTAA 57
Query: 61 DNKVSEDGFLVVMLS 75
D K+ L ++L+
Sbjct: 58 DYKILGGSVLHLVLA 72
>gi|285002325|ref|YP_003422389.1| ubiquitin [Pseudaletia unipuncta granulovirus]
gi|197343585|gb|ACH69400.1| ubiquitin [Pseudaletia unipuncta granulovirus]
Length = 77
Score = 53.9 bits (128), Expect = 7e-05, Method: Composition-based stats.
Identities = 31/74 (41%), Positives = 44/74 (59%), Gaps = 3/74 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+ SDTV +KK I D K++ P QQ LI GK L DE TL+
Sbjct: 1 MQIFVKTLTGKTITVDVESSDTVATLKKKIMD---KESVPADQQRLIFAGKQLDDERTLS 57
Query: 61 DNKVSEDGFLVVML 74
D + ++ L ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|50540180|ref|NP_001002557.1| neural precursor cell expressed, developmentally down-regulated
8, like [Danio rerio]
gi|49900721|gb|AAH76245.1| Neural precursor cell expressed, developmentally down-regulated
8, like [Danio rerio]
Length = 80
Score = 53.9 bits (128), Expect = 7e-05, Method: Composition-based stats.
Identities = 29/75 (38%), Positives = 45/75 (60%), Gaps = 3/75 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M + VKTL G EI ++P+D V +K+ +E+ K+ P QQ LI++GK + DE T A
Sbjct: 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEE---KEGIPPQQQRLIYSGKQMNDEKTAA 57
Query: 61 DNKVSEDGFLVVMLS 75
D K+ L ++L+
Sbjct: 58 DYKIQGGSVLHLVLA 72
>gi|33416929|gb|AAH55645.1| Neural precursor cell expressed, developmentally down-regulated 8
[Danio rerio]
Length = 89
Score = 53.9 bits (128), Expect = 7e-05, Method: Composition-based stats.
Identities = 29/75 (38%), Positives = 45/75 (60%), Gaps = 3/75 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M + VKTL G EI ++P+D V +K+ +E+ K+ P QQ LI++GK + DE T A
Sbjct: 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEE---KEGIPPQQQRLIYSGKQMNDEKTAA 57
Query: 61 DNKVSEDGFLVVMLS 75
D K+ L ++L+
Sbjct: 58 DYKIQGGSVLHLVLA 72
>gi|225703176|gb|ACO07434.1| NEDD8 precursor [Oncorhynchus mykiss]
Length = 88
Score = 53.9 bits (128), Expect = 7e-05, Method: Composition-based stats.
Identities = 27/64 (42%), Positives = 40/64 (62%), Gaps = 3/64 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M + VKTL G EI ++P+D V +K+ +E+ K+ P QQ LI++GK + DE T A
Sbjct: 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEE---KEGIPPQQQRLIYSGKQMNDEKTAA 57
Query: 61 DNKV 64
D K+
Sbjct: 58 DYKI 61
>gi|47228086|emb|CAF97715.1| unnamed protein product [Tetraodon nigroviridis]
Length = 77
Score = 53.9 bits (128), Expect = 7e-05, Method: Composition-based stats.
Identities = 29/75 (38%), Positives = 45/75 (60%), Gaps = 3/75 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M + VKTL G EI ++P+D V +K+ +E+ K+ P QQ LI++GK + DE T A
Sbjct: 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEE---KEGIPPQQQRLIYSGKQMNDEKTAA 57
Query: 61 DNKVSEDGFLVVMLS 75
D K+ L ++L+
Sbjct: 58 DYKIQGGSVLHLVLA 72
>gi|297697495|ref|XP_002825892.1| PREDICTED: ubiquitin-40S ribosomal protein S27a-like [Pongo
abelii]
Length = 155
Score = 53.9 bits (128), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 35/95 (36%), Positives = 53/95 (55%), Gaps = 8/95 (8%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ +KTL G + V+PSDT+ VK I+D +G P QQ LI GK L+D TL+
Sbjct: 1 MQIFMKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 61 DNKVSEDGFLVVMLSKSKTLGSAGASSAQPAHTTP 95
D + ++ L ++L S GA + ++TTP
Sbjct: 58 DYNIQKESTLHLVLRL-----SGGAKKRKKSYTTP 87
>gi|296216667|ref|XP_002754639.1| PREDICTED: ubiquitin-40S ribosomal protein S27a-like [Callithrix
jacchus]
Length = 155
Score = 53.9 bits (128), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 35/95 (36%), Positives = 52/95 (54%), Gaps = 8/95 (8%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D +G P QQ LI GK L+D TL+
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 61 DNKVSEDGFLVVMLSKSKTLGSAGASSAQPAHTTP 95
D + ++ L ++L GA + ++TTP
Sbjct: 58 DYNIQKESTLHLVLRL-----RGGAKKRKKSYTTP 87
>gi|389609121|dbj|BAM18172.1| UV excision repair protein rad23 [Papilio xuthus]
Length = 254
Score = 53.9 bits (128), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 23/45 (51%), Positives = 35/45 (77%), Gaps = 3/45 (6%)
Query: 152 DLEQTIQQIMDMGGGTWDKETVTRALQAAYNNPERAVDYLYSGIP 196
D E T+Q IMDMG ++++ V +AL+A+++N ERAV+YL +GIP
Sbjct: 65 DFESTVQSIMDMG---YNRQQVEQALRASFSNRERAVEYLITGIP 106
>gi|296483596|tpg|DAA25711.1| TPA: NEDD8 precursor [Bos taurus]
Length = 75
Score = 53.9 bits (128), Expect = 7e-05, Method: Composition-based stats.
Identities = 29/75 (38%), Positives = 45/75 (60%), Gaps = 3/75 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M + VKTL G EI ++P+D V +K+ +E+ K+ P QQ LI++GK + DE T A
Sbjct: 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEE---KEGIPPQQQRLIYSGKQMNDEKTAA 57
Query: 61 DNKVSEDGFLVVMLS 75
D K+ L ++L+
Sbjct: 58 DYKILGGSVLHLVLA 72
>gi|92790174|emb|CAI83756.1| Polyubiqutin 3 [Polyplastron multivesiculatum]
Length = 84
Score = 53.9 bits (128), Expect = 7e-05, Method: Composition-based stats.
Identities = 31/74 (41%), Positives = 44/74 (59%), Gaps = 3/74 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D K+ P QQ LI GK L+D TLA
Sbjct: 8 MQIFVKTLTGKTITLEVEPSDTIDNVKAKIQD---KEGIPPDQQRLIFAGKQLEDNRTLA 64
Query: 61 DNKVSEDGFLVVML 74
D + ++ L ++L
Sbjct: 65 DYNIQKESTLHLVL 78
>gi|392311875|pdb|4F8C|B Chain B, Structure Of The Cif:nedd8 Complex - Yersinia
Pseudotuberculosis Cycle Inhibiting Factor In Complex
With Human Nedd8
gi|392311877|pdb|4F8C|D Chain D, Structure Of The Cif:nedd8 Complex - Yersinia
Pseudotuberculosis Cycle Inhibiting Factor In Complex
With Human Nedd8
gi|392311916|pdb|4FBJ|B Chain B, Structure Of The Cif:nedd8 Complex - Photorhabdus
Luminescens Cycle Inhibiting Factor In Complex With
Human Nedd8
Length = 88
Score = 53.9 bits (128), Expect = 7e-05, Method: Composition-based stats.
Identities = 29/75 (38%), Positives = 45/75 (60%), Gaps = 3/75 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M + VKTL G EI ++P+D V +K+ +E+ K+ P QQ LI++GK + DE T A
Sbjct: 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEE---KEGIPPQQQRLIYSGKQMNDEKTAA 57
Query: 61 DNKVSEDGFLVVMLS 75
D K+ L ++L+
Sbjct: 58 DYKILGGSVLHLVLA 72
>gi|340522496|gb|EGR52729.1| hypothetical protein TRIREDRAFT_102581 [Trichoderma reesei QM6a]
Length = 341
Score = 53.9 bits (128), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 76/274 (27%), Positives = 118/274 (43%), Gaps = 65/274 (23%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
MK+T + LK F + V+P+D K+LKD+ T+
Sbjct: 1 MKVTFRDLKQQKFVLDVEPTD-----------------------------KILKDDDTVQ 31
Query: 61 DNKVSEDGFLVVMLSKSKTLGSAGASSAQPAHTTPPTTAPSSNSTPPQEASVPPPAPTPS 120
+ E GF+V M++K K +A A++A P T P A S+ + PP A S
Sbjct: 32 SYNIEEKGFVVCMVNKPKPAPAAAAAAAPPPATPAPPAAASTPAAPPAPAQ--------S 83
Query: 121 IPASNVTSNVTAANANSDTYGQAASNLVAGNDLEQTIQQIMDMGGGTWDKETVTRALQAA 180
+ N ++ T S L G++ + I + MG +++ + A++AA
Sbjct: 84 ATQAAAPPATPTPNRSTGT----PSGLAMGSERAEAIANMEAMG---FERTQIEAAMRAA 136
Query: 181 YNNPERAVDYLYSGIPETAEVAVPVAHFPASQAAETGAAGAAPVSGVPNSSPLNMFP-QE 239
+NNP+RAV+YL +GIPE+ + A AA +G + S +N+F
Sbjct: 137 FNNPDRAVEYLLTGIPES----IQQEQQQQRANPPQAAPAAAAPTGDDDGS-VNLFDLAA 191
Query: 240 TLSGAPAGG---------------LGSLDFLRNN 258
GAPA G LG+LDFLR+N
Sbjct: 192 QRRGAPASGGSPAAATAAAAAQGDLGNLDFLRHN 225
>gi|5453760|ref|NP_006147.1| NEDD8 precursor [Homo sapiens]
gi|27807479|ref|NP_777189.1| NEDD8 precursor [Bos taurus]
gi|126723578|ref|NP_001075681.1| NEDD8 precursor [Oryctolagus cuniculus]
gi|388490336|ref|NP_001253817.1| NEDD8 [Macaca mulatta]
gi|73962665|ref|XP_537389.2| PREDICTED: uncharacterized protein LOC480265 [Canis lupus
familiaris]
gi|149756128|ref|XP_001489881.1| PREDICTED: NEDD8-like [Equus caballus]
gi|301771352|ref|XP_002921113.1| PREDICTED: NEDD8-like isoform 1 [Ailuropoda melanoleuca]
gi|311260957|ref|XP_003128592.1| PREDICTED: NEDD8-like [Sus scrofa]
gi|332223148|ref|XP_003260730.1| PREDICTED: NEDD8 [Nomascus leucogenys]
gi|348577411|ref|XP_003474478.1| PREDICTED: NEDD8-like [Cavia porcellus]
gi|397475415|ref|XP_003809134.1| PREDICTED: NEDD8 [Pan paniscus]
gi|402863507|ref|XP_003896051.1| PREDICTED: NEDD8-like [Papio anubis]
gi|410048066|ref|XP_003952499.1| PREDICTED: NEDD8 [Pan troglodytes]
gi|410048068|ref|XP_003952500.1| PREDICTED: NEDD8 [Pan troglodytes]
gi|410048070|ref|XP_003952501.1| PREDICTED: NEDD8 [Pan troglodytes]
gi|410961988|ref|XP_003987560.1| PREDICTED: NEDD8 [Felis catus]
gi|426232690|ref|XP_004010354.1| PREDICTED: NEDD8 [Ovis aries]
gi|441667030|ref|XP_004091944.1| PREDICTED: NEDD8 [Nomascus leucogenys]
gi|2833270|sp|Q15843.1|NEDD8_HUMAN RecName: Full=NEDD8; AltName: Full=Neddylin; AltName: Full=Neural
precursor cell expressed developmentally down-regulated
protein 8; Short=NEDD-8; AltName: Full=Ubiquitin-like
protein Nedd8; Flags: Precursor
gi|47117091|sp|P61282.1|NEDD8_BOVIN RecName: Full=NEDD8; AltName: Full=Neddylin; AltName:
Full=Ubiquitin-like protein Nedd8; Flags: Precursor
gi|75075084|sp|Q4PLJ0.1|NEDD8_RABIT RecName: Full=NEDD8; AltName: Full=Neddylin; AltName:
Full=Ubiquitin-like protein Nedd8; Flags: Precursor
gi|8163907|gb|AAF73911.1|AF227256_1 NEDD8 [Bos taurus]
gi|461287|dbj|BAA04889.1| ubiquitin-like protein [Homo sapiens]
gi|67107103|gb|AAY67833.1| nedd8 [Oryctolagus cuniculus]
gi|74353765|gb|AAI04202.1| Neural precursor cell expressed, developmentally down-regulated 8
[Homo sapiens]
gi|74353986|gb|AAI02307.1| Neural precursor cell expressed, developmentally down-regulated 8
[Bos taurus]
gi|74355785|gb|AAI04201.1| Neural precursor cell expressed, developmentally down-regulated 8
[Homo sapiens]
gi|74356466|gb|AAI04665.1| Neural precursor cell expressed, developmentally down-regulated 8
[Homo sapiens]
gi|261861202|dbj|BAI47123.1| neural precursor cell expressed, developmentally down-regulated 8
[synthetic construct]
gi|380785629|gb|AFE64690.1| NEDD8 precursor [Macaca mulatta]
gi|383414049|gb|AFH30238.1| NEDD8 precursor [Macaca mulatta]
gi|384939298|gb|AFI33254.1| NEDD8 precursor [Macaca mulatta]
gi|410261252|gb|JAA18592.1| neural precursor cell expressed, developmentally down-regulated 8
[Pan troglodytes]
gi|410290142|gb|JAA23671.1| neural precursor cell expressed, developmentally down-regulated 8
[Pan troglodytes]
gi|410331231|gb|JAA34562.1| neural precursor cell expressed, developmentally down-regulated 8
[Pan troglodytes]
Length = 81
Score = 53.9 bits (128), Expect = 7e-05, Method: Composition-based stats.
Identities = 29/75 (38%), Positives = 45/75 (60%), Gaps = 3/75 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M + VKTL G EI ++P+D V +K+ +E+ K+ P QQ LI++GK + DE T A
Sbjct: 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEE---KEGIPPQQQRLIYSGKQMNDEKTAA 57
Query: 61 DNKVSEDGFLVVMLS 75
D K+ L ++L+
Sbjct: 58 DYKILGGSVLHLVLA 72
>gi|340505565|gb|EGR31882.1| uv excision repair protein, putative [Ichthyophthirius multifiliis]
Length = 395
Score = 53.9 bits (128), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 27/51 (52%), Positives = 36/51 (70%), Gaps = 3/51 (5%)
Query: 144 ASNLVAGNDLEQTIQQIMDMGGGTWDKETVTRALQAAYNNPERAVDYLYSG 194
AS++V G +LE I I MG +++ V +AL+AAYNNPERAV+YL SG
Sbjct: 122 ASDMVMGAELEAKIADIESMG---FERSKVIQALKAAYNNPERAVEYLLSG 169
>gi|92790172|emb|CAI83755.1| Polyubiqutin 2 [Polyplastron multivesiculatum]
Length = 346
Score = 53.9 bits (128), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 44/144 (30%), Positives = 64/144 (44%), Gaps = 16/144 (11%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D +G P QQ LI GK L+D TLA
Sbjct: 42 MQIFVKTLTGKTITLEVEPSDTIDNVKAKIQDKEG---IPPDQQRLIFAGKQLEDNRTLA 98
Query: 61 DNKVSEDGFLVVMLSKS-------KTL-GSAGASSAQPAHTTPPTTAPSSNSTPPQEASV 112
D + ++ L ++L KTL G +P+ T A + + +
Sbjct: 99 DYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIDNVKAKIQD-----KEGI 153
Query: 113 PPPAPTPSIPASNVTSNVTAANAN 136
PP + N T A+ N
Sbjct: 154 PPDQQRLIFAGKQLEDNRTLADYN 177
Score = 53.9 bits (128), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 44/144 (30%), Positives = 64/144 (44%), Gaps = 16/144 (11%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D +G P QQ LI GK L+D TLA
Sbjct: 118 MQIFVKTLTGKTITLEVEPSDTIDNVKAKIQDKEG---IPPDQQRLIFAGKQLEDNRTLA 174
Query: 61 DNKVSEDGFLVVMLSKS-------KTL-GSAGASSAQPAHTTPPTTAPSSNSTPPQEASV 112
D + ++ L ++L KTL G +P+ T A + + +
Sbjct: 175 DYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIDNVKAKIQD-----KEGI 229
Query: 113 PPPAPTPSIPASNVTSNVTAANAN 136
PP + N T A+ N
Sbjct: 230 PPDQQRLIFAGKQLEDNRTLADYN 253
Score = 53.9 bits (128), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 44/144 (30%), Positives = 64/144 (44%), Gaps = 16/144 (11%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D +G P QQ LI GK L+D TLA
Sbjct: 194 MQIFVKTLTGKTITLEVEPSDTIDNVKAKIQDKEG---IPPDQQRLIFAGKQLEDNRTLA 250
Query: 61 DNKVSEDGFLVVMLSKS-------KTL-GSAGASSAQPAHTTPPTTAPSSNSTPPQEASV 112
D + ++ L ++L KTL G +P+ T A + + +
Sbjct: 251 DYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIDNVKAKIQD-----KEGI 305
Query: 113 PPPAPTPSIPASNVTSNVTAANAN 136
PP + N T A+ N
Sbjct: 306 PPDQQRLIFAGKQLEDNRTLADYN 329
Score = 51.2 bits (121), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 44/75 (58%), Gaps = 3/75 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D +G P QQ LI GK L+D TLA
Sbjct: 270 MQIFVKTLTGKTITLEVEPSDTIDNVKAKIQDKEG---IPPDQQRLIFAGKQLEDNRTLA 326
Query: 61 DNKVSEDGFLVVMLS 75
D + ++ L ++L
Sbjct: 327 DYNIQKESTLHLVLR 341
>gi|164519242|ref|YP_001649029.1| viral ubiquitin [Helicoverpa armigera granulovirus]
gi|163869428|gb|ABY47738.1| viral ubiquitin [Helicoverpa armigera granulovirus]
Length = 77
Score = 53.9 bits (128), Expect = 8e-05, Method: Composition-based stats.
Identities = 31/74 (41%), Positives = 44/74 (59%), Gaps = 3/74 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+ SDTV +K+ I D K++ P QQ LI GK L DE TLA
Sbjct: 1 MQIFVKTLTGKTITVDVESSDTVATLKQKIMD---KESVPADQQRLIFAGKQLDDERTLA 57
Query: 61 DNKVSEDGFLVVML 74
D + ++ L ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|198426097|ref|XP_002120939.1| PREDICTED: similar to AN1, ubiquitin-like, homolog, partial
[Ciona intestinalis]
Length = 173
Score = 53.9 bits (128), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 46/75 (61%), Gaps = 3/75 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M+L ++TL G+ FE+RV P +TV+AVK I+ ++G P QQ LI L+DE L
Sbjct: 24 MELFIETLTGTCFELRVSPYETVIAVKAKIQRLEG---IPVSQQFLIWKNVELEDECCLR 80
Query: 61 DNKVSEDGFLVVMLS 75
D +++ L ++L+
Sbjct: 81 DYNITDGCTLKLVLA 95
>gi|395830210|ref|XP_003788227.1| PREDICTED: ubiquitin-40S ribosomal protein S27a-like isoform 1
[Otolemur garnettii]
gi|395830212|ref|XP_003788228.1| PREDICTED: ubiquitin-40S ribosomal protein S27a-like isoform 2
[Otolemur garnettii]
Length = 155
Score = 53.9 bits (128), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 35/95 (36%), Positives = 52/95 (54%), Gaps = 8/95 (8%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D +G P QQ LI GK L+D TL+
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIEKVKAKIQDKEG---IPPDQQRLIFAGKQLEDGHTLS 57
Query: 61 DNKVSEDGFLVVMLSKSKTLGSAGASSAQPAHTTP 95
D + ++ L ++L GA + ++TTP
Sbjct: 58 DYNIQKESTLHLVLRL-----RGGAKKWKESYTTP 87
>gi|196476696|gb|ACG76213.1| Nedd8 [Amblyomma americanum]
Length = 83
Score = 53.9 bits (128), Expect = 8e-05, Method: Composition-based stats.
Identities = 29/75 (38%), Positives = 45/75 (60%), Gaps = 3/75 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M + VKTL G EI ++P+D V +K+ +E+ K+ P QQ LI +GK + D+ T A
Sbjct: 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEE---KEGIPPAQQRLIFSGKQMNDDKTAA 57
Query: 61 DNKVSEDGFLVVMLS 75
D KV+ L ++L+
Sbjct: 58 DYKVTGGSVLHLVLA 72
>gi|92790176|emb|CAI83757.1| Polyubiqutin 4 [Polyplastron multivesiculatum]
Length = 177
Score = 53.9 bits (128), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 44/144 (30%), Positives = 64/144 (44%), Gaps = 16/144 (11%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D +G P QQ LI GK L+D TLA
Sbjct: 25 MQIFVKTLTGKTITLEVEPSDTIDNVKAKIQDKEG---IPPDQQRLIFAGKQLEDNRTLA 81
Query: 61 DNKVSEDGFLVVMLSKS-------KTL-GSAGASSAQPAHTTPPTTAPSSNSTPPQEASV 112
D + ++ L ++L KTL G +P+ T A + + +
Sbjct: 82 DYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIDNVKAKIQD-----KEGI 136
Query: 113 PPPAPTPSIPASNVTSNVTAANAN 136
PP + N T A+ N
Sbjct: 137 PPDQQRLIFAGKQLEDNRTLADYN 160
Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 44/75 (58%), Gaps = 3/75 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D +G P QQ LI GK L+D TLA
Sbjct: 101 MQIFVKTLTGKTITLEVEPSDTIDNVKAKIQDKEG---IPPDQQRLIFAGKQLEDNRTLA 157
Query: 61 DNKVSEDGFLVVMLS 75
D + ++ L ++L
Sbjct: 158 DYNIQKESTLHLVLR 172
>gi|4558043|pdb|1NDD|B Chain B, Structure Of Nedd8
gi|6729938|pdb|1NDD|A Chain A, Structure Of Nedd8
gi|6729939|pdb|1NDD|C Chain C, Structure Of Nedd8
gi|6729940|pdb|1NDD|D Chain D, Structure Of Nedd8
gi|40889583|pdb|1R4M|I Chain I, Appbp1-Uba3-Nedd8, An E1-Ubiquitin-Like Protein Complex
gi|40889586|pdb|1R4M|J Chain J, Appbp1-Uba3-Nedd8, An E1-Ubiquitin-Like Protein Complex
gi|40889589|pdb|1R4M|K Chain K, Appbp1-Uba3-Nedd8, An E1-Ubiquitin-Like Protein Complex
gi|40889592|pdb|1R4M|L Chain L, Appbp1-Uba3-Nedd8, An E1-Ubiquitin-Like Protein Complex
gi|40889595|pdb|1R4N|I Chain I, Appbp1-Uba3-Nedd8, An E1-Ubiquitin-Like Protein Complex
With Atp
gi|40889598|pdb|1R4N|J Chain J, Appbp1-Uba3-Nedd8, An E1-Ubiquitin-Like Protein Complex
With Atp
gi|40889601|pdb|1R4N|K Chain K, Appbp1-Uba3-Nedd8, An E1-Ubiquitin-Like Protein Complex
With Atp
gi|40889604|pdb|1R4N|L Chain L, Appbp1-Uba3-Nedd8, An E1-Ubiquitin-Like Protein Complex
With Atp
gi|61679546|pdb|1XT9|B Chain B, Crystal Structure Of Den1 In Complex With Nedd8
gi|262367760|pdb|2KO3|A Chain A, Nedd8 Solution Structure
Length = 76
Score = 53.5 bits (127), Expect = 8e-05, Method: Composition-based stats.
Identities = 29/75 (38%), Positives = 45/75 (60%), Gaps = 3/75 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M + VKTL G EI ++P+D V +K+ +E+ K+ P QQ LI++GK + DE T A
Sbjct: 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEE---KEGIPPQQQRLIYSGKQMNDEKTAA 57
Query: 61 DNKVSEDGFLVVMLS 75
D K+ L ++L+
Sbjct: 58 DYKILGGSVLHLVLA 72
>gi|285803227|pdb|3GZN|I Chain I, Structure Of Nedd8-Activating Enzyme In Complex With
Nedd8 And Mln4924
gi|285803228|pdb|3GZN|J Chain J, Structure Of Nedd8-Activating Enzyme In Complex With
Nedd8 And Mln4924
Length = 82
Score = 53.5 bits (127), Expect = 8e-05, Method: Composition-based stats.
Identities = 29/75 (38%), Positives = 45/75 (60%), Gaps = 3/75 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M + VKTL G EI ++P+D V +K+ +E+ K+ P QQ LI++GK + DE T A
Sbjct: 7 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEE---KEGIPPQQQRLIYSGKQMNDEKTAA 63
Query: 61 DNKVSEDGFLVVMLS 75
D K+ L ++L+
Sbjct: 64 DYKILGGSVLHLVLA 78
>gi|92790146|emb|CAI83742.1| Polyubiquitin 2 [Dasytricha ruminantium]
Length = 354
Score = 53.5 bits (127), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 44/144 (30%), Positives = 64/144 (44%), Gaps = 16/144 (11%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D +G P QQ LI GK L+D TLA
Sbjct: 50 MQIFVKTLTGKTITLDVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDNRTLA 106
Query: 61 DNKVSEDGFLVVMLSKS-------KTL-GSAGASSAQPAHTTPPTTAPSSNSTPPQEASV 112
D + ++ L ++L KTL G +P+ T A + + +
Sbjct: 107 DYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLDVEPSDTIENVKAKIQD-----KEGI 161
Query: 113 PPPAPTPSIPASNVTSNVTAANAN 136
PP + N T A+ N
Sbjct: 162 PPDQQRLIFAGKQLEDNRTLADYN 185
Score = 53.5 bits (127), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 44/144 (30%), Positives = 64/144 (44%), Gaps = 16/144 (11%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D +G P QQ LI GK L+D TLA
Sbjct: 126 MQIFVKTLTGKTITLDVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDNRTLA 182
Query: 61 DNKVSEDGFLVVMLSKS-------KTL-GSAGASSAQPAHTTPPTTAPSSNSTPPQEASV 112
D + ++ L ++L KTL G +P+ T A + + +
Sbjct: 183 DYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLDVEPSDTIENVKAKIQD-----KEGI 237
Query: 113 PPPAPTPSIPASNVTSNVTAANAN 136
PP + N T A+ N
Sbjct: 238 PPDQQRLIFAGKQLEDNRTLADYN 261
Score = 53.5 bits (127), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 44/144 (30%), Positives = 64/144 (44%), Gaps = 16/144 (11%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D +G P QQ LI GK L+D TLA
Sbjct: 202 MQIFVKTLTGKTITLDVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDNRTLA 258
Query: 61 DNKVSEDGFLVVMLSKS-------KTL-GSAGASSAQPAHTTPPTTAPSSNSTPPQEASV 112
D + ++ L ++L KTL G +P+ T A + + +
Sbjct: 259 DYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLDVEPSDTIENVKAKIQD-----KEGI 313
Query: 113 PPPAPTPSIPASNVTSNVTAANAN 136
PP + N T A+ N
Sbjct: 314 PPDQQRLIFAGKQLEDNRTLADYN 337
Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 44/75 (58%), Gaps = 3/75 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D +G P QQ LI GK L+D TLA
Sbjct: 278 MQIFVKTLTGKTITLDVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDNRTLA 334
Query: 61 DNKVSEDGFLVVMLS 75
D + ++ L ++L
Sbjct: 335 DYNIQKESTLHLVLR 349
>gi|395854973|ref|XP_003799950.1| PREDICTED: ubiquitin-40S ribosomal protein S27a-like [Otolemur
garnettii]
Length = 155
Score = 53.5 bits (127), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 35/95 (36%), Positives = 52/95 (54%), Gaps = 8/95 (8%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D +G P QQ LI GK L+D TL+
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGDTLS 57
Query: 61 DNKVSEDGFLVVMLSKSKTLGSAGASSAQPAHTTP 95
D + ++ L ++L GA + ++TTP
Sbjct: 58 DYNIQKESTLHLVLRL-----CGGAKKRKKSYTTP 87
>gi|92790184|emb|CAI83761.1| Polyubiqutin 2 [Epidinium ecaudatum]
Length = 322
Score = 53.5 bits (127), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 44/144 (30%), Positives = 64/144 (44%), Gaps = 16/144 (11%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D +G P QQ LI GK L+D TLA
Sbjct: 18 MQIFVKTLTGKTITLDVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDNRTLA 74
Query: 61 DNKVSEDGFLVVMLSKS-------KTL-GSAGASSAQPAHTTPPTTAPSSNSTPPQEASV 112
D + ++ L ++L KTL G +P+ T A + + +
Sbjct: 75 DYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLDVEPSDTIENVKAKIQD-----KEGI 129
Query: 113 PPPAPTPSIPASNVTSNVTAANAN 136
PP + N T A+ N
Sbjct: 130 PPDQQRLIFAGKQLEDNRTLADYN 153
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/144 (29%), Positives = 63/144 (43%), Gaps = 16/144 (11%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D +G P QQ LI GK L+D TLA
Sbjct: 94 MQIFVKTLTGKTITLDVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDNRTLA 150
Query: 61 DNKVSEDGFLVVMLSKS-------KTL-GSAGASSAQPAHTTPPTTAPSSNSTPPQEASV 112
D + ++ L ++L KT G +P+ T A + + +
Sbjct: 151 DYNIQKESTLHLVLRLRGGMQIFVKTFTGKTITLDVEPSDTIENVKAKIQD-----KEGI 205
Query: 113 PPPAPTPSIPASNVTSNVTAANAN 136
PP + N T A+ N
Sbjct: 206 PPDQQRLIFAGKQLEDNRTLADYN 229
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/144 (29%), Positives = 63/144 (43%), Gaps = 16/144 (11%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKT G + V+PSDT+ VK I+D +G P QQ LI GK L+D TLA
Sbjct: 170 MQIFVKTFTGKTITLDVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDNRTLA 226
Query: 61 DNKVSEDGFLVVMLSKS-------KTL-GSAGASSAQPAHTTPPTTAPSSNSTPPQEASV 112
D + ++ L ++L KTL G +P+ T A + + +
Sbjct: 227 DYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLDVEPSDTIENVKAKIQD-----KEGI 281
Query: 113 PPPAPTPSIPASNVTSNVTAANAN 136
PP + N T A+ N
Sbjct: 282 PPDQQRLIFAGKQLEDNRTLADYN 305
Score = 50.8 bits (120), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 44/75 (58%), Gaps = 3/75 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D +G P QQ LI GK L+D TLA
Sbjct: 246 MQIFVKTLTGKTITLDVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDNRTLA 302
Query: 61 DNKVSEDGFLVVMLS 75
D + ++ L ++L
Sbjct: 303 DYNIQKESTLHLVLR 317
>gi|282601359|ref|ZP_05981478.2| ubiquitin family protein [Subdoligranulum variabile DSM 15176]
gi|282569316|gb|EFB74851.1| ubiquitin family [Subdoligranulum variabile DSM 15176]
Length = 721
Score = 53.5 bits (127), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 43/73 (58%), Gaps = 3/73 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VK L G H + V+P+D + VK+ I+D K+ P +Q LI GK+L+D TL
Sbjct: 76 MQVFVKRLAGKHITLEVEPTDRIEDVKQKIQD---KEGIPPERQRLIFAGKILEDGNTLQ 132
Query: 61 DNKVSEDGFLVVM 73
D + +D + ++
Sbjct: 133 DYSIRKDSTIYLV 145
>gi|92790166|emb|CAI83752.1| Polyubiqutin 1 [Eudiplodinium maggii]
Length = 259
Score = 53.5 bits (127), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 44/144 (30%), Positives = 64/144 (44%), Gaps = 16/144 (11%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D +G P QQ LI GK L+D TLA
Sbjct: 31 MQIFVKTLTGKTITLDVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDNRTLA 87
Query: 61 DNKVSEDGFLVVMLSKS-------KTL-GSAGASSAQPAHTTPPTTAPSSNSTPPQEASV 112
D + ++ L ++L KTL G +P+ T A + + +
Sbjct: 88 DYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLDVEPSDTIENVKAKIQD-----KEGI 142
Query: 113 PPPAPTPSIPASNVTSNVTAANAN 136
PP + N T A+ N
Sbjct: 143 PPDQQRLIFAGKQLEDNRTLADYN 166
Score = 53.5 bits (127), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 44/144 (30%), Positives = 64/144 (44%), Gaps = 16/144 (11%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D +G P QQ LI GK L+D TLA
Sbjct: 107 MQIFVKTLTGKTITLDVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDNRTLA 163
Query: 61 DNKVSEDGFLVVMLSKS-------KTL-GSAGASSAQPAHTTPPTTAPSSNSTPPQEASV 112
D + ++ L ++L KTL G +P+ T A + + +
Sbjct: 164 DYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLDVEPSDTIENVKAKIQD-----KEGI 218
Query: 113 PPPAPTPSIPASNVTSNVTAANAN 136
PP + N T A+ N
Sbjct: 219 PPDQQRLIFAGKQLEDNRTLADYN 242
Score = 50.4 bits (119), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 44/75 (58%), Gaps = 3/75 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D +G P QQ LI GK L+D TLA
Sbjct: 183 MQIFVKTLTGKTITLDVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDNRTLA 239
Query: 61 DNKVSEDGFLVVMLS 75
D + ++ L ++L
Sbjct: 240 DYNIQKESTLHLVLR 254
>gi|410930452|ref|XP_003978612.1| PREDICTED: NEDD8-like [Takifugu rubripes]
Length = 86
Score = 53.5 bits (127), Expect = 8e-05, Method: Composition-based stats.
Identities = 29/75 (38%), Positives = 45/75 (60%), Gaps = 3/75 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M + VKTL G EI ++P+D V +K+ +E+ K+ P QQ LI++GK + DE T A
Sbjct: 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEE---KEGIPPQQQRLIYSGKQMNDEKTAA 57
Query: 61 DNKVSEDGFLVVMLS 75
D K+ L ++L+
Sbjct: 58 DYKIQGGSVLHLVLA 72
>gi|92790148|emb|CAI83743.1| Polyubiqutin 3 [Dasytricha ruminantium]
Length = 363
Score = 53.5 bits (127), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 44/144 (30%), Positives = 64/144 (44%), Gaps = 16/144 (11%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D +G P QQ LI GK L+D TLA
Sbjct: 59 MQIFVKTLTGKTITLDVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDNRTLA 115
Query: 61 DNKVSEDGFLVVMLSKS-------KTL-GSAGASSAQPAHTTPPTTAPSSNSTPPQEASV 112
D + ++ L ++L KTL G +P+ T A + + +
Sbjct: 116 DYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLDVEPSDTIENVKAKIQD-----KEGI 170
Query: 113 PPPAPTPSIPASNVTSNVTAANAN 136
PP + N T A+ N
Sbjct: 171 PPDQQRLIFAGKQLEDNRTLADYN 194
Score = 53.5 bits (127), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 44/144 (30%), Positives = 64/144 (44%), Gaps = 16/144 (11%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D +G P QQ LI GK L+D TLA
Sbjct: 135 MQIFVKTLTGKTITLDVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDNRTLA 191
Query: 61 DNKVSEDGFLVVMLSKS-------KTL-GSAGASSAQPAHTTPPTTAPSSNSTPPQEASV 112
D + ++ L ++L KTL G +P+ T A + + +
Sbjct: 192 DYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLDVEPSDTIENVKAKIQD-----KEGI 246
Query: 113 PPPAPTPSIPASNVTSNVTAANAN 136
PP + N T A+ N
Sbjct: 247 PPDQQRLIFAGKQLEDNRTLADYN 270
Score = 53.5 bits (127), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 44/144 (30%), Positives = 64/144 (44%), Gaps = 16/144 (11%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D +G P QQ LI GK L+D TLA
Sbjct: 211 MQIFVKTLTGKTITLDVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDNRTLA 267
Query: 61 DNKVSEDGFLVVMLSKS-------KTL-GSAGASSAQPAHTTPPTTAPSSNSTPPQEASV 112
D + ++ L ++L KTL G +P+ T A + + +
Sbjct: 268 DYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLDVEPSDTIENVKAKIQD-----KEGI 322
Query: 113 PPPAPTPSIPASNVTSNVTAANAN 136
PP + N T A+ N
Sbjct: 323 PPDQQRLIFAGKQLEDNRTLADYN 346
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 44/75 (58%), Gaps = 3/75 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D +G P QQ LI GK L+D TLA
Sbjct: 287 MQIFVKTLTGKTITLDVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDNRTLA 343
Query: 61 DNKVSEDGFLVVMLS 75
D + ++ L ++L
Sbjct: 344 DYNIQKESTLHLVLR 358
Score = 42.0 bits (97), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 37/126 (29%), Positives = 53/126 (42%), Gaps = 16/126 (12%)
Query: 19 PSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVMLSKS- 77
PSDT+ VK I+D +G P QQ LI GK L+D TLAD + ++ L ++L
Sbjct: 1 PSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDNRTLADYNIQKESTLHLVLRLRG 57
Query: 78 ------KTL-GSAGASSAQPAHTTPPTTAPSSNSTPPQEASVPPPAPTPSIPASNVTSNV 130
KTL G +P+ T A + + +PP + N
Sbjct: 58 GMQIFVKTLTGKTITLDVEPSDTIENVKAKIQD-----KEGIPPDQQRLIFAGKQLEDNR 112
Query: 131 TAANAN 136
T A+ N
Sbjct: 113 TLADYN 118
>gi|92790168|emb|CAI83753.1| Polyubiqutin 1 [Metadinium medium]
Length = 83
Score = 53.5 bits (127), Expect = 9e-05, Method: Composition-based stats.
Identities = 31/74 (41%), Positives = 44/74 (59%), Gaps = 3/74 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D K+ P QQ LI GK L+D TLA
Sbjct: 7 MQIFVKTLTGKTITLDVEPSDTIENVKAKIQD---KEGIPPDQQRLIFAGKQLEDNRTLA 63
Query: 61 DNKVSEDGFLVVML 74
D + ++ L ++L
Sbjct: 64 DYNIQKESTLHLVL 77
>gi|92790156|emb|CAI83747.1| Polyubiqutin 1 [Isotricha prostoma]
Length = 366
Score = 53.5 bits (127), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 44/144 (30%), Positives = 64/144 (44%), Gaps = 16/144 (11%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D +G P QQ LI GK L+D TLA
Sbjct: 62 MQIFVKTLTGKTITLDVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDNRTLA 118
Query: 61 DNKVSEDGFLVVMLSKS-------KTL-GSAGASSAQPAHTTPPTTAPSSNSTPPQEASV 112
D + ++ L ++L KTL G +P+ T A + + +
Sbjct: 119 DYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLDVEPSDTIENVKAKIQD-----KEGI 173
Query: 113 PPPAPTPSIPASNVTSNVTAANAN 136
PP + N T A+ N
Sbjct: 174 PPDQQRLIFAGKQLEDNRTLADYN 197
Score = 53.5 bits (127), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 44/144 (30%), Positives = 64/144 (44%), Gaps = 16/144 (11%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D +G P QQ LI GK L+D TLA
Sbjct: 138 MQIFVKTLTGKTITLDVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDNRTLA 194
Query: 61 DNKVSEDGFLVVMLSKS-------KTL-GSAGASSAQPAHTTPPTTAPSSNSTPPQEASV 112
D + ++ L ++L KTL G +P+ T A + + +
Sbjct: 195 DYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLDVEPSDTIENVKAKIQD-----KEGI 249
Query: 113 PPPAPTPSIPASNVTSNVTAANAN 136
PP + N T A+ N
Sbjct: 250 PPDQQRLIFAGKQLEDNRTLADYN 273
Score = 53.5 bits (127), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 44/144 (30%), Positives = 64/144 (44%), Gaps = 16/144 (11%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D +G P QQ LI GK L+D TLA
Sbjct: 214 MQIFVKTLTGKTITLDVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDNRTLA 270
Query: 61 DNKVSEDGFLVVMLSKS-------KTL-GSAGASSAQPAHTTPPTTAPSSNSTPPQEASV 112
D + ++ L ++L KTL G +P+ T A + + +
Sbjct: 271 DYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLDVEPSDTIENVKAKIQD-----KEGI 325
Query: 113 PPPAPTPSIPASNVTSNVTAANAN 136
PP + N T A+ N
Sbjct: 326 PPDQQRLIFAGKQLEDNRTLADYN 349
Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 44/75 (58%), Gaps = 3/75 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D +G P QQ LI GK L+D TLA
Sbjct: 290 MQIFVKTLTGKTITLDVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDNRTLA 346
Query: 61 DNKVSEDGFLVVMLS 75
D + ++ L ++L
Sbjct: 347 DYNIQKESTLHLVLR 361
Score = 43.9 bits (102), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 38/128 (29%), Positives = 55/128 (42%), Gaps = 16/128 (12%)
Query: 17 VQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVMLSK 76
V+PSDT+ VK I+D +G P QQ LI GK L+D TLAD + ++ L ++L
Sbjct: 2 VEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDNRTLADYNIQKESTLHLVLRL 58
Query: 77 S-------KTL-GSAGASSAQPAHTTPPTTAPSSNSTPPQEASVPPPAPTPSIPASNVTS 128
KTL G +P+ T A + + +PP +
Sbjct: 59 RGGMQIFVKTLTGKTITLDVEPSDTIENVKAKIQD-----KEGIPPDQQRLIFAGKQLED 113
Query: 129 NVTAANAN 136
N T A+ N
Sbjct: 114 NRTLADYN 121
>gi|92790178|emb|CAI83758.1| Polyubiqutin 5 [Polyplastron multivesiculatum]
Length = 220
Score = 53.5 bits (127), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 44/144 (30%), Positives = 64/144 (44%), Gaps = 16/144 (11%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D +G P QQ LI GK L+D TLA
Sbjct: 68 MQIFVKTLTGKTITLEVEPSDTIDNVKAKIQDKEG---IPPDQQRLIFAGKQLEDNRTLA 124
Query: 61 DNKVSEDGFLVVMLSKS-------KTL-GSAGASSAQPAHTTPPTTAPSSNSTPPQEASV 112
D + ++ L ++L KTL G +P+ T A + + +
Sbjct: 125 DYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIDNVKAKIQD-----KEGI 179
Query: 113 PPPAPTPSIPASNVTSNVTAANAN 136
PP + N T A+ N
Sbjct: 180 PPDQQRLIFAGKQLEDNRTLADYN 203
Score = 51.2 bits (121), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 44/75 (58%), Gaps = 3/75 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D +G P QQ LI GK L+D TLA
Sbjct: 144 MQIFVKTLTGKTITLEVEPSDTIDNVKAKIQDKEG---IPPDQQRLIFAGKQLEDNRTLA 200
Query: 61 DNKVSEDGFLVVMLS 75
D + ++ L ++L
Sbjct: 201 DYNIQKESTLHLVLR 215
Score = 45.1 bits (105), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 39/135 (28%), Positives = 57/135 (42%), Gaps = 16/135 (11%)
Query: 10 GSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGF 69
G + V+PSDT+ VK I+D +G P QQ LI GK L+D TLAD + ++
Sbjct: 1 GKTITLEVEPSDTIDNVKAKIQDKEG---IPPDQQRLIFAGKQLEDNRTLADYNIQKEST 57
Query: 70 LVVMLSKS-------KTL-GSAGASSAQPAHTTPPTTAPSSNSTPPQEASVPPPAPTPSI 121
L ++L KTL G +P+ T A + + +PP
Sbjct: 58 LHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIDNVKAKIQD-----KEGIPPDQQRLIF 112
Query: 122 PASNVTSNVTAANAN 136
+ N T A+ N
Sbjct: 113 AGKQLEDNRTLADYN 127
>gi|371572867|gb|AEX37896.1| ubiquitin/TetR-Vp16 fusion protein [piggyBac transformation
vector OX3604]
Length = 414
Score = 53.5 bits (127), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 35/93 (37%), Positives = 50/93 (53%), Gaps = 13/93 (13%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D K+ P QQ LI G+ L+D TL+
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQD---KEGIPPDQQRLIFAGRQLEDGRTLS 57
Query: 61 DNKVSED----------GFLVVMLSKSKTLGSA 83
D + ++ G +V L KSK + SA
Sbjct: 58 DYNIQKESTLHLVLRLRGGMVSRLDKSKVINSA 90
>gi|426242585|ref|XP_004015152.1| PREDICTED: ubiquitin-40S ribosomal protein S27a-like [Ovis aries]
Length = 155
Score = 53.5 bits (127), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 35/95 (36%), Positives = 52/95 (54%), Gaps = 8/95 (8%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D +G P QQ LI GK L+D TL+
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFVGKQLEDGRTLS 57
Query: 61 DNKVSEDGFLVVMLSKSKTLGSAGASSAQPAHTTP 95
D + ++ L ++L GA + ++TTP
Sbjct: 58 DYNIQKESTLHLVLRL-----RGGAKKRKKSYTTP 87
>gi|92790182|emb|CAI83760.1| Polyubiqutin 1 [Epidinium ecaudatum]
Length = 378
Score = 53.5 bits (127), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 44/144 (30%), Positives = 64/144 (44%), Gaps = 16/144 (11%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D +G P QQ LI GK L+D TLA
Sbjct: 74 MQIFVKTLTGKTITLDVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDNRTLA 130
Query: 61 DNKVSEDGFLVVMLSKS-------KTL-GSAGASSAQPAHTTPPTTAPSSNSTPPQEASV 112
D + ++ L ++L KTL G +P+ T A + + +
Sbjct: 131 DYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLDVEPSDTIENVKAKIQD-----KEGI 185
Query: 113 PPPAPTPSIPASNVTSNVTAANAN 136
PP + N T A+ N
Sbjct: 186 PPDQQRLIFAGKQLEDNRTLADYN 209
Score = 53.5 bits (127), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 44/144 (30%), Positives = 64/144 (44%), Gaps = 16/144 (11%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D +G P QQ LI GK L+D TLA
Sbjct: 150 MQIFVKTLTGKTITLDVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDNRTLA 206
Query: 61 DNKVSEDGFLVVMLSKS-------KTL-GSAGASSAQPAHTTPPTTAPSSNSTPPQEASV 112
D + ++ L ++L KTL G +P+ T A + + +
Sbjct: 207 DYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLDVEPSDTIENVKAKIQD-----KEGI 261
Query: 113 PPPAPTPSIPASNVTSNVTAANAN 136
PP + N T A+ N
Sbjct: 262 PPDQQRLIFAGKQLEDNRTLADYN 285
Score = 53.5 bits (127), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 44/144 (30%), Positives = 64/144 (44%), Gaps = 16/144 (11%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D +G P QQ LI GK L+D TLA
Sbjct: 226 MQIFVKTLTGKTITLDVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDNRTLA 282
Query: 61 DNKVSEDGFLVVMLSKS-------KTL-GSAGASSAQPAHTTPPTTAPSSNSTPPQEASV 112
D + ++ L ++L KTL G +P+ T A + + +
Sbjct: 283 DYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLDVEPSDTIENVKAKIQD-----KEGI 337
Query: 113 PPPAPTPSIPASNVTSNVTAANAN 136
PP + N T A+ N
Sbjct: 338 PPDQQRLIFAGKQLEDNRTLADYN 361
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 43/140 (30%), Positives = 61/140 (43%), Gaps = 16/140 (11%)
Query: 5 VKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKV 64
VKTL G + V+PSDT+ VK I+D +G P QQ LI GK L+D TLAD +
Sbjct: 2 VKTLTGKTITLDVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDNRTLADYNI 58
Query: 65 SEDGFLVVMLSKS-------KTL-GSAGASSAQPAHTTPPTTAPSSNSTPPQEASVPPPA 116
++ L ++L KTL G +P+ T A + + +PP
Sbjct: 59 QKESTLHLVLRLRGGMQIFVKTLTGKTITLDVEPSDTIENVKAKIQD-----KEGIPPDQ 113
Query: 117 PTPSIPASNVTSNVTAANAN 136
+ N T A+ N
Sbjct: 114 QRLIFAGKQLEDNRTLADYN 133
Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 44/75 (58%), Gaps = 3/75 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D +G P QQ LI GK L+D TLA
Sbjct: 302 MQIFVKTLTGKTITLDVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDNRTLA 358
Query: 61 DNKVSEDGFLVVMLS 75
D + ++ L ++L
Sbjct: 359 DYNIQKESTLHLVLR 373
>gi|309265697|ref|XP_003086579.1| PREDICTED: ubiquitin-40S ribosomal protein S27a-like [Mus
musculus]
Length = 155
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/95 (36%), Positives = 52/95 (54%), Gaps = 8/95 (8%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D +G P QQ LI GK L+D TL+
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIGNVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 61 DNKVSEDGFLVVMLSKSKTLGSAGASSAQPAHTTP 95
D + ++ L ++L GA + ++TTP
Sbjct: 58 DYNIQKESTLHLVLRL-----RGGAKKRKKSYTTP 87
>gi|340368423|ref|XP_003382751.1| PREDICTED: polyubiquitin-A-like [Amphimedon queenslandica]
Length = 776
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/115 (31%), Positives = 61/115 (53%), Gaps = 7/115 (6%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M + VKTL G +++ P+ TV K E ++ K+ P QQ LI +G+ L+++ ++
Sbjct: 86 MTIYVKTLTGRVVSVQIDPTSTVRDAK---ERIRQKEGVPVEQQQLIFSGRTLENDRSID 142
Query: 61 DNKVSEDG--FLVVMLSKSKTLGSAGASSAQPAHTT--PPTTAPSSNSTPPQEAS 111
+ +D LV+ L+ S G + +S+ P+HTT PP S +S+ Q S
Sbjct: 143 SYNIQKDSTVHLVIKLNSSNESGQSASSARHPSHTTQLPPVPPHSQSSSTRQNWS 197
>gi|92790164|emb|CAI83751.1| Polyubiqutin 1 [Entodinium caudatum]
Length = 297
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 44/144 (30%), Positives = 64/144 (44%), Gaps = 16/144 (11%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D +G P QQ LI GK L+D TLA
Sbjct: 69 MQIFVKTLTGKTITLDVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDNRTLA 125
Query: 61 DNKVSEDGFLVVMLSKS-------KTL-GSAGASSAQPAHTTPPTTAPSSNSTPPQEASV 112
D + ++ L ++L KTL G +P+ T A + + +
Sbjct: 126 DYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLDVEPSDTIENVKAKIQD-----KEGI 180
Query: 113 PPPAPTPSIPASNVTSNVTAANAN 136
PP + N T A+ N
Sbjct: 181 PPDQQRLIFAGKQLEDNRTLADYN 204
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 44/144 (30%), Positives = 64/144 (44%), Gaps = 16/144 (11%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D +G P QQ LI GK L+D TLA
Sbjct: 145 MQIFVKTLTGKTITLDVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDNRTLA 201
Query: 61 DNKVSEDGFLVVMLSKS-------KTL-GSAGASSAQPAHTTPPTTAPSSNSTPPQEASV 112
D + ++ L ++L KTL G +P+ T A + + +
Sbjct: 202 DYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLDVEPSDTIENVKAKIQD-----KEGI 256
Query: 113 PPPAPTPSIPASNVTSNVTAANAN 136
PP + N T A+ N
Sbjct: 257 PPDQQRLIFAGKQLEDNRTLADYN 280
Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 44/75 (58%), Gaps = 3/75 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D +G P QQ LI GK L+D TLA
Sbjct: 221 MQIFVKTLTGKTITLDVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDNRTLA 277
Query: 61 DNKVSEDGFLVVMLS 75
D + ++ L ++L
Sbjct: 278 DYNIQKESTLHLVLR 292
Score = 44.7 bits (104), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 39/135 (28%), Positives = 57/135 (42%), Gaps = 16/135 (11%)
Query: 10 GSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGF 69
G + V+PSDT+ VK I+D +G P QQ LI GK L+D TLAD + ++
Sbjct: 2 GKTITLDVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDNRTLADYNIQKEST 58
Query: 70 LVVMLSKS-------KTL-GSAGASSAQPAHTTPPTTAPSSNSTPPQEASVPPPAPTPSI 121
L ++L KTL G +P+ T A + + +PP
Sbjct: 59 LHLVLRLRGGMQIFVKTLTGKTITLDVEPSDTIENVKAKIQD-----KEGIPPDQQRLIF 113
Query: 122 PASNVTSNVTAANAN 136
+ N T A+ N
Sbjct: 114 AGKQLEDNRTLADYN 128
>gi|92790170|emb|CAI83754.1| Polyubiqutin 1 [Polyplastron multivesiculatum]
Length = 379
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 44/144 (30%), Positives = 64/144 (44%), Gaps = 16/144 (11%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D +G P QQ LI GK L+D TLA
Sbjct: 75 MQIFVKTLTGKTITLEVEPSDTIDNVKAKIQDKEG---IPPDQQRLIFAGKQLEDNRTLA 131
Query: 61 DNKVSEDGFLVVMLSKS-------KTL-GSAGASSAQPAHTTPPTTAPSSNSTPPQEASV 112
D + ++ L ++L KTL G +P+ T A + + +
Sbjct: 132 DYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIDNVKAKIQD-----KEGI 186
Query: 113 PPPAPTPSIPASNVTSNVTAANAN 136
PP + N T A+ N
Sbjct: 187 PPDQQRLIFAGKQLEDNRTLADYN 210
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 44/144 (30%), Positives = 64/144 (44%), Gaps = 16/144 (11%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D +G P QQ LI GK L+D TLA
Sbjct: 151 MQIFVKTLTGKTITLEVEPSDTIDNVKAKIQDKEG---IPPDQQRLIFAGKQLEDNRTLA 207
Query: 61 DNKVSEDGFLVVMLSKS-------KTL-GSAGASSAQPAHTTPPTTAPSSNSTPPQEASV 112
D + ++ L ++L KTL G +P+ T A + + +
Sbjct: 208 DYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIDNVKAKIQD-----KEGI 262
Query: 113 PPPAPTPSIPASNVTSNVTAANAN 136
PP + N T A+ N
Sbjct: 263 PPDQQRLIFAGKQLEDNRTLADYN 286
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 44/144 (30%), Positives = 64/144 (44%), Gaps = 16/144 (11%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D +G P QQ LI GK L+D TLA
Sbjct: 227 MQIFVKTLTGKTITLEVEPSDTIDNVKAKIQDKEG---IPPDQQRLIFAGKQLEDNRTLA 283
Query: 61 DNKVSEDGFLVVMLSKS-------KTL-GSAGASSAQPAHTTPPTTAPSSNSTPPQEASV 112
D + ++ L ++L KTL G +P+ T A + + +
Sbjct: 284 DYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIDNVKAKIQD-----KEGI 338
Query: 113 PPPAPTPSIPASNVTSNVTAANAN 136
PP + N T A+ N
Sbjct: 339 PPDQQRLIFAGKQLEDNRTLADYN 362
Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 43/140 (30%), Positives = 61/140 (43%), Gaps = 16/140 (11%)
Query: 5 VKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKV 64
VKTL G + V+PSDT+ VK I+D +G P QQ LI GK L+D TLAD +
Sbjct: 3 VKTLTGKTITLEVEPSDTIDNVKAKIQDKEG---IPPDQQRLIFAGKQLEDNRTLADYNI 59
Query: 65 SEDGFLVVMLSKS-------KTL-GSAGASSAQPAHTTPPTTAPSSNSTPPQEASVPPPA 116
++ L ++L KTL G +P+ T A + + +PP
Sbjct: 60 QKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIDNVKAKIQD-----KEGIPPDQ 114
Query: 117 PTPSIPASNVTSNVTAANAN 136
+ N T A+ N
Sbjct: 115 QRLIFAGKQLEDNRTLADYN 134
Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 44/75 (58%), Gaps = 3/75 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D +G P QQ LI GK L+D TLA
Sbjct: 303 MQIFVKTLTGKTITLEVEPSDTIDNVKAKIQDKEG---IPPDQQRLIFAGKQLEDNRTLA 359
Query: 61 DNKVSEDGFLVVMLS 75
D + ++ L ++L
Sbjct: 360 DYNIQKESTLHLVLR 374
>gi|225716184|gb|ACO13938.1| NEDD8 precursor [Esox lucius]
Length = 88
Score = 53.5 bits (127), Expect = 1e-04, Method: Composition-based stats.
Identities = 29/75 (38%), Positives = 45/75 (60%), Gaps = 3/75 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M + VKTL G EI ++P+D V +K+ +E+ K+ P QQ LI++GK + DE T A
Sbjct: 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEE---KEGIPPQQQRLIYSGKQMNDEETAA 57
Query: 61 DNKVSEDGFLVVMLS 75
D K+ L ++L+
Sbjct: 58 DYKIQGGSVLHLVLA 72
>gi|440493001|gb|ELQ75520.1| putative Ubiquitin, Ubiquitin subgroup protein
[Trachipleistophora hominis]
Length = 78
Score = 53.5 bits (127), Expect = 1e-04, Method: Composition-based stats.
Identities = 31/74 (41%), Positives = 44/74 (59%), Gaps = 3/74 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D K+ P QQ LI GK L+D TL+
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTICDVKSKIQD---KEGIPPDQQRLIFAGKQLEDGRTLS 57
Query: 61 DNKVSEDGFLVVML 74
D V ++ L ++L
Sbjct: 58 DYNVQKESTLHLVL 71
>gi|78101605|pdb|2BKR|B Chain B, Nedd8 Nedp1 Complex
Length = 77
Score = 53.5 bits (127), Expect = 1e-04, Method: Composition-based stats.
Identities = 29/75 (38%), Positives = 45/75 (60%), Gaps = 3/75 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M + VKTL G EI ++P+D V +K+ +E+ K+ P QQ LI++GK + DE T A
Sbjct: 2 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEE---KEGIPPQQQRLIYSGKQMNDEKTAA 58
Query: 61 DNKVSEDGFLVVMLS 75
D K+ L ++L+
Sbjct: 59 DYKILGGSVLHLVLA 73
>gi|195037074|ref|XP_001989990.1| GH18491 [Drosophila grimshawi]
gi|193894186|gb|EDV93052.1| GH18491 [Drosophila grimshawi]
Length = 282
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 51/202 (25%), Positives = 90/202 (44%), Gaps = 51/202 (25%)
Query: 1 MKLTVKTL--KGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETT 58
MKL+++TL K FE+ S+ V+ +K+ + + + + P LI+ G++++D+
Sbjct: 1 MKLSIRTLDQKTITFELN-DASEKVLQLKQRLVAL-PEISQPVENLQLIYGGRIMQDDHK 58
Query: 59 LADNKVSEDGFLVVMLSKSKTLGSAGASSAQPAHTTPPTTAPSSNSTPPQEASVPPPAPT 118
L D + ED +V+M K + Q PT A VP P+ T
Sbjct: 59 LIDYNIMEDKIIVLMTKKVQEKEQNKQQQQQQPAPPTPTPA-----------EVPRPSLT 107
Query: 119 PSIPASNVTSNVTAANANSDTYGQAASNLVAGNDLEQTIQQIMDMGGGTWDKETVTRALQ 178
P EQ ++ ++ MG ++++ V AL+
Sbjct: 108 PD---------------------------------EQRVRDLILMG---YEEQDVRAALR 131
Query: 179 AAYNNPERAVDYLYSGIPETAE 200
A++N+PERA++YL +GIP A+
Sbjct: 132 ASFNHPERAIEYLITGIPNQAD 153
>gi|145530714|ref|XP_001451129.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124418773|emb|CAK83732.1| unnamed protein product [Paramecium tetraurelia]
Length = 624
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 40/117 (34%), Positives = 59/117 (50%), Gaps = 8/117 (6%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ AVK I+D +G P QQ LI GK L+D TL+
Sbjct: 26 MQIFVKTLTGKTITLDVEPSDTIDAVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 82
Query: 61 DNKVSEDG--FLVVMLSKSKTL-GSAGASSAQPAHTTPPTTAPSSNS--TPPQEASV 112
D + ++ LV+ L + TL G +P+ T A + PP + +
Sbjct: 83 DYNIQKESTLHLVLRLKRWNTLTGKTITLDVEPSDTIDAVKAKIQDKEGIPPDQQRL 139
Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 45/75 (60%), Gaps = 3/75 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ AVK I+D +G P QQ LI GK L+D TL+
Sbjct: 244 MQIFVKTLTGKTITLDVEPSDTIDAVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 300
Query: 61 DNKVSEDGFLVVMLS 75
D + ++ L ++L
Sbjct: 301 DYNIQKESTLHLVLR 315
Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 45/75 (60%), Gaps = 3/75 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ AVK I+D +G P QQ LI GK L+D TL+
Sbjct: 320 MQIFVKTLTGKTITLDVEPSDTIDAVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 376
Query: 61 DNKVSEDGFLVVMLS 75
D + ++ L ++L
Sbjct: 377 DYNIQKESTLHLVLR 391
Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 45/75 (60%), Gaps = 3/75 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ AVK I+D +G P QQ LI GK L+D TL+
Sbjct: 396 MQIFVKTLTGKTITLDVEPSDTIDAVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 452
Query: 61 DNKVSEDGFLVVMLS 75
D + ++ L ++L
Sbjct: 453 DYNIQKESTLHLVLR 467
Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 45/75 (60%), Gaps = 3/75 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ AVK I+D +G P QQ LI GK L+D TL+
Sbjct: 548 MQIFVKTLTGKTITLDVEPSDTIDAVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 604
Query: 61 DNKVSEDGFLVVMLS 75
D + ++ L ++L
Sbjct: 605 DYNIQKESTLHLVLR 619
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 45/75 (60%), Gaps = 3/75 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VK+L G + V+PSDT+ AVK I+D +G P QQ LI GK L+D TL+
Sbjct: 472 MQIFVKSLTGKTITLDVEPSDTIDAVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 528
Query: 61 DNKVSEDGFLVVMLS 75
D + ++ L ++L
Sbjct: 529 DYNIQKESTLHLVLR 543
Score = 44.7 bits (104), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 40/69 (57%), Gaps = 3/69 (4%)
Query: 7 TLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSE 66
TL G + V+PSDT+ AVK I+D +G P QQ LI GK L+D TL+D + +
Sbjct: 174 TLTGKTITLDVEPSDTIDAVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLSDYNIQK 230
Query: 67 DGFLVVMLS 75
+ L ++L
Sbjct: 231 ESTLHLVLR 239
>gi|92790152|emb|CAI83745.1| Polyubiqutin 1 [Isotricha intestinalis]
Length = 301
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 44/144 (30%), Positives = 64/144 (44%), Gaps = 16/144 (11%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D +G P QQ LI GK L+D TLA
Sbjct: 73 MQIFVKTLTGKTITLDVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDNRTLA 129
Query: 61 DNKVSEDGFLVVMLSKS-------KTL-GSAGASSAQPAHTTPPTTAPSSNSTPPQEASV 112
D + ++ L ++L KTL G +P+ T A + + +
Sbjct: 130 DYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLDVEPSDTIENVKAKIQD-----KEGI 184
Query: 113 PPPAPTPSIPASNVTSNVTAANAN 136
PP + N T A+ N
Sbjct: 185 PPDQQRLIFAGKQLEDNRTLADYN 208
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 44/144 (30%), Positives = 64/144 (44%), Gaps = 16/144 (11%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D +G P QQ LI GK L+D TLA
Sbjct: 149 MQIFVKTLTGKTITLDVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDNRTLA 205
Query: 61 DNKVSEDGFLVVMLSKS-------KTL-GSAGASSAQPAHTTPPTTAPSSNSTPPQEASV 112
D + ++ L ++L KTL G +P+ T A + + +
Sbjct: 206 DYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLDVEPSDTIENVKAKIQD-----KEGI 260
Query: 113 PPPAPTPSIPASNVTSNVTAANAN 136
PP + N T A+ N
Sbjct: 261 PPDQQRLIFAGKQLEDNRTLADYN 284
Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 44/75 (58%), Gaps = 3/75 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D +G P QQ LI GK L+D TLA
Sbjct: 225 MQIFVKTLTGKTITLDVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDNRTLA 281
Query: 61 DNKVSEDGFLVVMLS 75
D + ++ L ++L
Sbjct: 282 DYNIQKESTLHLVLR 296
Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 43/140 (30%), Positives = 61/140 (43%), Gaps = 16/140 (11%)
Query: 5 VKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKV 64
VKTL G + V+PSDT+ VK I+D +G P QQ LI GK L+D TLAD +
Sbjct: 1 VKTLTGKTITLDVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDNRTLADYNI 57
Query: 65 SEDGFLVVMLSKS-------KTL-GSAGASSAQPAHTTPPTTAPSSNSTPPQEASVPPPA 116
++ L ++L KTL G +P+ T A + + +PP
Sbjct: 58 QKESTLHLVLRLRGGMQIFVKTLTGKTITLDVEPSDTIENVKAKIQD-----KEGIPPDQ 112
Query: 117 PTPSIPASNVTSNVTAANAN 136
+ N T A+ N
Sbjct: 113 QRLIFAGKQLEDNRTLADYN 132
>gi|92790144|emb|CAI83741.1| Polyubiqutin 1 [Dasytricha ruminantium]
gi|92790150|emb|CAI83744.1| Polyubiqutin 4 [Dasytricha ruminantium]
gi|92790154|emb|CAI83746.1| Polyubiqutin 2 [Isotricha intestinalis]
gi|92790158|emb|CAI83748.1| Polyubiqutin 2 [Isotricha prostoma]
Length = 379
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 44/144 (30%), Positives = 64/144 (44%), Gaps = 16/144 (11%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D +G P QQ LI GK L+D TLA
Sbjct: 75 MQIFVKTLTGKTITLDVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDNRTLA 131
Query: 61 DNKVSEDGFLVVMLSKS-------KTL-GSAGASSAQPAHTTPPTTAPSSNSTPPQEASV 112
D + ++ L ++L KTL G +P+ T A + + +
Sbjct: 132 DYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLDVEPSDTIENVKAKIQD-----KEGI 186
Query: 113 PPPAPTPSIPASNVTSNVTAANAN 136
PP + N T A+ N
Sbjct: 187 PPDQQRLIFAGKQLEDNRTLADYN 210
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 44/144 (30%), Positives = 64/144 (44%), Gaps = 16/144 (11%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D +G P QQ LI GK L+D TLA
Sbjct: 151 MQIFVKTLTGKTITLDVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDNRTLA 207
Query: 61 DNKVSEDGFLVVMLSKS-------KTL-GSAGASSAQPAHTTPPTTAPSSNSTPPQEASV 112
D + ++ L ++L KTL G +P+ T A + + +
Sbjct: 208 DYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLDVEPSDTIENVKAKIQD-----KEGI 262
Query: 113 PPPAPTPSIPASNVTSNVTAANAN 136
PP + N T A+ N
Sbjct: 263 PPDQQRLIFAGKQLEDNRTLADYN 286
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 44/144 (30%), Positives = 64/144 (44%), Gaps = 16/144 (11%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D +G P QQ LI GK L+D TLA
Sbjct: 227 MQIFVKTLTGKTITLDVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDNRTLA 283
Query: 61 DNKVSEDGFLVVMLSKS-------KTL-GSAGASSAQPAHTTPPTTAPSSNSTPPQEASV 112
D + ++ L ++L KTL G +P+ T A + + +
Sbjct: 284 DYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLDVEPSDTIENVKAKIQD-----KEGI 338
Query: 113 PPPAPTPSIPASNVTSNVTAANAN 136
PP + N T A+ N
Sbjct: 339 PPDQQRLIFAGKQLEDNRTLADYN 362
Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 43/140 (30%), Positives = 61/140 (43%), Gaps = 16/140 (11%)
Query: 5 VKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKV 64
VKTL G + V+PSDT+ VK I+D +G P QQ LI GK L+D TLAD +
Sbjct: 3 VKTLTGKTITLDVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDNRTLADYNI 59
Query: 65 SEDGFLVVMLSKS-------KTL-GSAGASSAQPAHTTPPTTAPSSNSTPPQEASVPPPA 116
++ L ++L KTL G +P+ T A + + +PP
Sbjct: 60 QKESTLHLVLRLRGGMQIFVKTLTGKTITLDVEPSDTIENVKAKIQD-----KEGIPPDQ 114
Query: 117 PTPSIPASNVTSNVTAANAN 136
+ N T A+ N
Sbjct: 115 QRLIFAGKQLEDNRTLADYN 134
Score = 50.8 bits (120), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 44/75 (58%), Gaps = 3/75 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D +G P QQ LI GK L+D TLA
Sbjct: 303 MQIFVKTLTGKTITLDVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDNRTLA 359
Query: 61 DNKVSEDGFLVVMLS 75
D + ++ L ++L
Sbjct: 360 DYNIQKESTLHLVLR 374
>gi|92790160|emb|CAI83749.1| Polyubiqutin 3 [Isotricha prostoma]
Length = 374
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 44/144 (30%), Positives = 64/144 (44%), Gaps = 16/144 (11%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D +G P QQ LI GK L+D TLA
Sbjct: 70 MQIFVKTLTGKTITLDVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDNRTLA 126
Query: 61 DNKVSEDGFLVVMLSKS-------KTL-GSAGASSAQPAHTTPPTTAPSSNSTPPQEASV 112
D + ++ L ++L KTL G +P+ T A + + +
Sbjct: 127 DYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLDVEPSDTIENVKAKIQD-----KEGI 181
Query: 113 PPPAPTPSIPASNVTSNVTAANAN 136
PP + N T A+ N
Sbjct: 182 PPDQQRLIFAGKQLEDNRTLADYN 205
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 44/144 (30%), Positives = 64/144 (44%), Gaps = 16/144 (11%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D +G P QQ LI GK L+D TLA
Sbjct: 146 MQIFVKTLTGKTITLDVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDNRTLA 202
Query: 61 DNKVSEDGFLVVMLSKS-------KTL-GSAGASSAQPAHTTPPTTAPSSNSTPPQEASV 112
D + ++ L ++L KTL G +P+ T A + + +
Sbjct: 203 DYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLDVEPSDTIENVKAKIQD-----KEGI 257
Query: 113 PPPAPTPSIPASNVTSNVTAANAN 136
PP + N T A+ N
Sbjct: 258 PPDQQRLIFAGKQLEDNRTLADYN 281
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 44/144 (30%), Positives = 64/144 (44%), Gaps = 16/144 (11%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D +G P QQ LI GK L+D TLA
Sbjct: 222 MQIFVKTLTGKTITLDVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDNRTLA 278
Query: 61 DNKVSEDGFLVVMLSKS-------KTL-GSAGASSAQPAHTTPPTTAPSSNSTPPQEASV 112
D + ++ L ++L KTL G +P+ T A + + +
Sbjct: 279 DYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLDVEPSDTIENVKAKIQD-----KEGI 333
Query: 113 PPPAPTPSIPASNVTSNVTAANAN 136
PP + N T A+ N
Sbjct: 334 PPDQQRLIFAGKQLEDNRTLADYN 357
Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 44/75 (58%), Gaps = 3/75 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D +G P QQ LI GK L+D TLA
Sbjct: 298 MQIFVKTLTGKTITLDVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDNRTLA 354
Query: 61 DNKVSEDGFLVVMLS 75
D + ++ L ++L
Sbjct: 355 DYNIQKESTLHLVLR 369
Score = 45.8 bits (107), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 40/137 (29%), Positives = 58/137 (42%), Gaps = 16/137 (11%)
Query: 8 LKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSED 67
L G + V+PSDT+ VK I+D +G P QQ LI GK L+D TLAD + ++
Sbjct: 1 LTGKTITLDVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDNRTLADYNIQKE 57
Query: 68 GFLVVMLSKS-------KTL-GSAGASSAQPAHTTPPTTAPSSNSTPPQEASVPPPAPTP 119
L ++L KTL G +P+ T A + + +PP
Sbjct: 58 STLHLVLRLRGGMQIFVKTLTGKTITLDVEPSDTIENVKAKIQD-----KEGIPPDQQRL 112
Query: 120 SIPASNVTSNVTAANAN 136
+ N T A+ N
Sbjct: 113 IFAGKQLEDNRTLADYN 129
>gi|51873804|gb|AAH78600.1| LOC446966 protein, partial [Xenopus laevis]
Length = 77
Score = 53.5 bits (127), Expect = 1e-04, Method: Composition-based stats.
Identities = 28/73 (38%), Positives = 44/73 (60%), Gaps = 3/73 (4%)
Query: 3 LTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADN 62
+ VKTL G EI ++P+D V +K+ +E+ K+ P QQ LI++GK + DE T AD
Sbjct: 3 IKVKTLTGKEIEIDIEPTDKVERIKERVEE---KEGIPPQQQRLIYSGKQMNDEKTAADY 59
Query: 63 KVSEDGFLVVMLS 75
K+ L ++L+
Sbjct: 60 KIQGGSVLHLVLA 72
>gi|92790180|emb|CAI83759.1| Polyubiqutin 6 [Polyplastron multivesiculatum]
Length = 81
Score = 53.1 bits (126), Expect = 1e-04, Method: Composition-based stats.
Identities = 31/74 (41%), Positives = 44/74 (59%), Gaps = 3/74 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D K+ P QQ LI GK L+D TLA
Sbjct: 5 MQIFVKTLTGKTITLEVEPSDTIDNVKAKIQD---KEGIPPDQQRLIFAGKQLEDNRTLA 61
Query: 61 DNKVSEDGFLVVML 74
D + ++ L ++L
Sbjct: 62 DYNIQKESTLHLVL 75
>gi|150866496|ref|XP_001386122.2| hypothetical protein PICST_85034 [Scheffersomyces stipitis CBS
6054]
gi|149387752|gb|ABN68093.2| predicted protein [Scheffersomyces stipitis CBS 6054]
Length = 361
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 52/88 (59%), Gaps = 3/88 (3%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
+ +T+K+ + +E+ V PS TV +K+ I D K + P +Q LI++GKVLKD T+A
Sbjct: 6 IDITIKSSGDTKYELSVSPSLTVYDLKELIAD---KADIPADRQRLIYSGKVLKDTETIA 62
Query: 61 DNKVSEDGFLVVMLSKSKTLGSAGASSA 88
KV + ++ S ++ G+ AS+A
Sbjct: 63 SYKVQTGHTIHMVRSAARATGAPSASNA 90
>gi|9635302|ref|NP_059200.1| ORF52 [Xestia c-nigrum granulovirus]
gi|6175696|gb|AAF05166.1|AF162221_52 ORF52 [Xestia c-nigrum granulovirus]
Length = 77
Score = 53.1 bits (126), Expect = 1e-04, Method: Composition-based stats.
Identities = 31/74 (41%), Positives = 44/74 (59%), Gaps = 3/74 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+ SDTV +K+ I D K++ P QQ LI GK L DE TLA
Sbjct: 1 MQIFVKTLTGKTITVDVESSDTVATLKQKIMD---KESVPADQQRLIFAGKQLDDERTLA 57
Query: 61 DNKVSEDGFLVVML 74
D + ++ L ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|317055545|ref|YP_004104012.1| ubiquitin [Ruminococcus albus 7]
gi|315447814|gb|ADU21378.1| ubiquitin [Ruminococcus albus 7]
Length = 264
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 45/74 (60%), Gaps = 3/74 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D K++ +Q LI GK L+D+ TLA
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQD---KESIAPNKQRLIFAGKQLEDDRTLA 57
Query: 61 DNKVSEDGFLVVML 74
D + ++ L ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|348539962|ref|XP_003457458.1| PREDICTED: NEDD8-like [Oreochromis niloticus]
Length = 90
Score = 53.1 bits (126), Expect = 1e-04, Method: Composition-based stats.
Identities = 34/94 (36%), Positives = 51/94 (54%), Gaps = 5/94 (5%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M + VKTL G EI ++P+D V +K+ +E+ K+ P QQ LI++GK + DE T A
Sbjct: 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEE---KEGIPPQQQRLIYSGKQMNDEKTAA 57
Query: 61 DNKVSEDGFLVVMLSKSKTLGSAGASSAQPAHTT 94
D K+ L ++L+ GS S P +T
Sbjct: 58 DYKIQGGSVLHLVLALRG--GSTNHSCCLPLSST 89
>gi|340054316|emb|CCC48612.1| putative UV excision repair RAD23 protein, fragment, partial
[Trypanosoma vivax Y486]
Length = 299
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 57/211 (27%), Positives = 94/211 (44%), Gaps = 22/211 (10%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ +K + G E V TV +KK +ED Y + ++ +VL+D T+
Sbjct: 1 MRVILKGIDGIKHEYEVAAEATVHDIKKLMED-----EYTLESLRICYDNRVLEDSMTME 55
Query: 61 DNKVSEDGFLVVMLSK--SKTLGSAGASSAQPAHTTPPTTAPSSNSTPPQEASVPPPAPT 118
+ + LV + K KT+ +A + +P+ + +A S + E
Sbjct: 56 GLGMRDRTVLVFVGRKHEKKTMSTATDVATKPSEGSARVSASSQSGQVNVE--------- 106
Query: 119 PSIPASNVTSNVTAANANSDTYGQAASN-LVAGNDLEQTIQQIMDMGGGTWDKETVTRAL 177
S+P S T + N + +N ++ G D I ++ MG D+ V AL
Sbjct: 107 -SVPQSTATEVPQSVAHNPPSASSTETNPMLRGVD-PALIDTVVSMG--FEDRTQVALAL 162
Query: 178 QAAYNNPERAVDYLYSGIPETAEVAV-PVAH 207
+AAY N +RAV++L SGIP E + PV H
Sbjct: 163 RAAYMNVDRAVEFLCSGIPSNVERDLGPVFH 193
>gi|163915892|gb|AAI57792.1| LOC100135402 protein [Xenopus (Silurana) tropicalis]
Length = 85
Score = 53.1 bits (126), Expect = 1e-04, Method: Composition-based stats.
Identities = 30/74 (40%), Positives = 44/74 (59%), Gaps = 3/74 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D K+ P QQ LI GK L+D TL+
Sbjct: 9 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLS 65
Query: 61 DNKVSEDGFLVVML 74
D + ++ L ++L
Sbjct: 66 DYNIQKESTLHLVL 79
>gi|348520112|ref|XP_003447573.1| PREDICTED: NEDD8-like [Oreochromis niloticus]
Length = 91
Score = 53.1 bits (126), Expect = 1e-04, Method: Composition-based stats.
Identities = 29/75 (38%), Positives = 45/75 (60%), Gaps = 3/75 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M + VKTL G EI ++P+D V +K+ +E+ K+ P QQ LI++GK + DE T A
Sbjct: 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEE---KEGIPPQQQRLIYSGKQMNDEKTAA 57
Query: 61 DNKVSEDGFLVVMLS 75
D K+ L ++L+
Sbjct: 58 DYKIQGGSVLHLVLA 72
>gi|196049817|pdb|3DBH|I Chain I, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190ala-Nedd8ala72arg)
gi|196049820|pdb|3DBH|J Chain J, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190ala-Nedd8ala72arg)
gi|196049823|pdb|3DBH|K Chain K, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190ala-Nedd8ala72arg)
gi|196049826|pdb|3DBH|L Chain L, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190ala-Nedd8ala72arg)
gi|196049841|pdb|3DBR|I Chain I, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190gln-Nedd8ala72arg)
gi|196049844|pdb|3DBR|J Chain J, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190gln-Nedd8ala72arg)
gi|196049847|pdb|3DBR|K Chain K, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190gln-Nedd8ala72arg)
gi|196049850|pdb|3DBR|L Chain L, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190gln-Nedd8ala72arg)
Length = 88
Score = 53.1 bits (126), Expect = 1e-04, Method: Composition-based stats.
Identities = 27/64 (42%), Positives = 40/64 (62%), Gaps = 3/64 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M + VKTL G EI ++P+D V +K+ +E+ K+ P QQ LI++GK + DE T A
Sbjct: 13 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEE---KEGIPPQQQRLIYSGKQMNDEKTAA 69
Query: 61 DNKV 64
D K+
Sbjct: 70 DYKI 73
>gi|296235576|ref|XP_002762957.1| PREDICTED: NEDD8-like [Callithrix jacchus]
Length = 114
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 43/71 (60%), Gaps = 3/71 (4%)
Query: 5 VKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKV 64
VKTL G +I ++P+D V +K+ +E+ QG P QQ LI++GK + DE T AD K+
Sbjct: 38 VKTLTGKEIKIDIEPTDKVERIKERVEEKQG---IPPQQQRLIYSGKQMNDEKTTADYKI 94
Query: 65 SEDGFLVVMLS 75
L +ML+
Sbjct: 95 LGGSVLHLMLA 105
>gi|159162478|pdb|1IFY|A Chain A, Solution Structure Of The Internal Uba Domain Of Hhr23a
Length = 49
Score = 53.1 bits (126), Expect = 1e-04, Method: Composition-based stats.
Identities = 25/50 (50%), Positives = 36/50 (72%), Gaps = 3/50 (6%)
Query: 147 LVAGNDLEQTIQQIMDMGGGTWDKETVTRALQAAYNNPERAVDYLYSGIP 196
LV G++ E + +IM MG +++E V AL+A+YNNP RAV+YL +GIP
Sbjct: 2 LVTGSEYETMLTEIMSMG---YERERVVAALRASYNNPHRAVEYLLTGIP 48
>gi|58414957|gb|AAW73081.1| polyubiquitin [Cercomonas agilis]
Length = 95
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/75 (42%), Positives = 46/75 (61%), Gaps = 3/75 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ AVK+ I+D K+ P QQ LI GK L+D TLA
Sbjct: 1 MQIFVKTLTGKTITLDVEPSDTIEAVKQKIQD---KEGIPPDQQRLIFAGKQLEDGRTLA 57
Query: 61 DNKVSEDGFLVVMLS 75
D + ++ L ++L
Sbjct: 58 DYNIQKESTLHLVLR 72
>gi|242011968|ref|XP_002426715.1| conserved hypothetical protein [Pediculus humanus corporis]
gi|212510886|gb|EEB13977.1| conserved hypothetical protein [Pediculus humanus corporis]
Length = 183
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 47/75 (62%), Gaps = 3/75 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
++L+++TL G++FEI+V P+DT+M +K I+ V+G P QQ L++N L++ +
Sbjct: 19 LELSIETLAGTNFEIKVSPNDTIMTIKSKIQSVEG---IPISQQHLLYNFTELENSAFIR 75
Query: 61 DNKVSEDGFLVVMLS 75
D + L ++LS
Sbjct: 76 DYSIQNGATLKLVLS 90
>gi|422920075|pdb|4HCP|B Chain B, Crystal Structure Of Burkholderia Pseudomallei Effector
Protein Chbp In Complex With Nedd8
Length = 78
Score = 53.1 bits (126), Expect = 1e-04, Method: Composition-based stats.
Identities = 29/75 (38%), Positives = 45/75 (60%), Gaps = 3/75 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M + VKTL G EI ++P+D V +K+ +E+ K+ P QQ LI++GK + DE T A
Sbjct: 3 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEE---KEGIPPQQQRLIYSGKQMNDEKTAA 59
Query: 61 DNKVSEDGFLVVMLS 75
D K+ L ++L+
Sbjct: 60 DYKILGGSVLHLVLA 74
>gi|47115261|emb|CAG28590.1| NEDD8 [Homo sapiens]
Length = 81
Score = 53.1 bits (126), Expect = 1e-04, Method: Composition-based stats.
Identities = 28/75 (37%), Positives = 45/75 (60%), Gaps = 3/75 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M + VKTL G E+ ++P+D V +K+ +E+ K+ P QQ LI++GK + DE T A
Sbjct: 1 MLIKVKTLTGKEIEVDIEPTDKVERIKERVEE---KEGIPPQQQRLIYSGKQMNDEKTAA 57
Query: 61 DNKVSEDGFLVVMLS 75
D K+ L ++L+
Sbjct: 58 DYKILGGSVLHLVLA 72
>gi|123398957|ref|XP_001301380.1| polyubiquitin [Trichomonas vaginalis G3]
gi|123497770|ref|XP_001327247.1| polyubiquitin [Trichomonas vaginalis G3]
gi|154420157|ref|XP_001583094.1| polyubiquitin [Trichomonas vaginalis G3]
gi|121882554|gb|EAX88450.1| polyubiquitin, putative [Trichomonas vaginalis G3]
gi|121910174|gb|EAY15024.1| polyubiquitin, putative [Trichomonas vaginalis G3]
gi|121917333|gb|EAY22108.1| polyubiquitin, putative [Trichomonas vaginalis G3]
Length = 132
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/91 (36%), Positives = 49/91 (53%), Gaps = 7/91 (7%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G H + V+P+D + VK I+D +G P QQ LI GK L+D TL
Sbjct: 1 MQIFVKTLTGKHITLEVEPTDRIEDVKAKIQDKEG---IPPDQQRLIFAGKQLEDGNTLQ 57
Query: 61 DNKVSEDGFLVVMLSKSKTLGSAGASSAQPA 91
D + +D L ++L L G + +P+
Sbjct: 58 DYSIQKDSTLHLVLR----LRGGGKEAYEPS 84
>gi|403287887|ref|XP_003935154.1| PREDICTED: polyubiquitin-B-like isoform 2 [Saimiri boliviensis
boliviensis]
Length = 83
Score = 53.1 bits (126), Expect = 1e-04, Method: Composition-based stats.
Identities = 30/74 (40%), Positives = 43/74 (58%), Gaps = 3/74 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D K+ P QQ LI GK L+D TL
Sbjct: 7 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQD---KEGIPHDQQRLIFAGKQLEDGRTLP 63
Query: 61 DNKVSEDGFLVVML 74
D + ++ L ++L
Sbjct: 64 DYNIQKESTLYLVL 77
>gi|310831340|ref|YP_003969983.1| ubiquitin [Cafeteria roenbergensis virus BV-PW1]
gi|309386524|gb|ADO67384.1| ubiquitin [Cafeteria roenbergensis virus BV-PW1]
Length = 75
Score = 52.8 bits (125), Expect = 1e-04, Method: Composition-based stats.
Identities = 30/74 (40%), Positives = 44/74 (59%), Gaps = 3/74 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M + VKTL G + V+ SD + A+K+ I+D K+ P QQ LI +GK L+D TLA
Sbjct: 1 MNIFVKTLTGKTITLDVESSDNIEAIKQKIQD---KEGIPPDQQRLIFSGKQLEDGRTLA 57
Query: 61 DNKVSEDGFLVVML 74
D + +D L ++L
Sbjct: 58 DYNIDKDATLHLVL 71
>gi|296205125|ref|XP_002749733.1| PREDICTED: polyubiquitin-C-like [Callithrix jacchus]
Length = 177
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 44/77 (57%), Gaps = 3/77 (3%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G V+PSDT+ VK I+D K+ P QQ LI GK L+D TL+
Sbjct: 101 MQIFVKTLTGKTITFEVEPSDTIENVKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLS 157
Query: 61 DNKVSEDGFLVVMLSKS 77
D + ++ L ++L S
Sbjct: 158 DYNIQKESTLHLVLRLS 174
>gi|567767|gb|AAA53067.1| p125 protein, partial [Bovine viral diarrhea virus 1]
Length = 1054
Score = 52.8 bits (125), Expect = 1e-04, Method: Composition-based stats.
Identities = 30/74 (40%), Positives = 44/74 (59%), Gaps = 3/74 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D K+ P QQ LI GK L+D TL+
Sbjct: 347 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLS 403
Query: 61 DNKVSEDGFLVVML 74
D + ++ L ++L
Sbjct: 404 DYNIQKESTLHLVL 417
Score = 52.8 bits (125), Expect = 1e-04, Method: Composition-based stats.
Identities = 30/74 (40%), Positives = 44/74 (59%), Gaps = 3/74 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D K+ P QQ LI GK L+D TL+
Sbjct: 423 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLS 479
Query: 61 DNKVSEDGFLVVML 74
D + ++ L ++L
Sbjct: 480 DYNIQKESTLHLVL 493
>gi|47215744|emb|CAG05755.1| unnamed protein product [Tetraodon nigroviridis]
Length = 86
Score = 52.8 bits (125), Expect = 1e-04, Method: Composition-based stats.
Identities = 29/75 (38%), Positives = 45/75 (60%), Gaps = 3/75 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M + VKTL G EI ++P+D V +K+ +E+ K+ P QQ LI++GK + DE T A
Sbjct: 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEE---KEGIPPQQQRLIYSGKQMNDEKTAA 57
Query: 61 DNKVSEDGFLVVMLS 75
D K+ L ++L+
Sbjct: 58 DYKIQGGSVLHLVLA 72
>gi|126031228|pdb|2NVU|I Chain I, Structure Of Appbp1-Uba3~nedd8-Nedd8-Mgatp-Ubc12(C111a),
A Trapped Ubiquitin-Like Protein Activation Complex
gi|126031229|pdb|2NVU|J Chain J, Structure Of Appbp1-Uba3~nedd8-Nedd8-Mgatp-Ubc12(C111a),
A Trapped Ubiquitin-Like Protein Activation Complex
Length = 81
Score = 52.8 bits (125), Expect = 1e-04, Method: Composition-based stats.
Identities = 29/75 (38%), Positives = 45/75 (60%), Gaps = 3/75 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M + VKTL G EI ++P+D V +K+ +E+ K+ P QQ LI++GK + DE T A
Sbjct: 6 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEE---KEGIPPQQQRLIYSGKQMNDEKTAA 62
Query: 61 DNKVSEDGFLVVMLS 75
D K+ L ++L+
Sbjct: 63 DYKILGGSVLHLVLA 77
>gi|395508039|ref|XP_003758323.1| PREDICTED: ubiquitin-40S ribosomal protein S27a [Sarcophilus
harrisii]
Length = 228
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/95 (35%), Positives = 51/95 (53%), Gaps = 7/95 (7%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D K+ P QQ LI GK L+D TL+
Sbjct: 73 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLS 129
Query: 61 DNKVSEDGFLVVMLSKSKTLGSAGASSAQPAHTTP 95
D + ++ L ++L L + ++TTP
Sbjct: 130 DYNIQKESTLHLVLR----LRGGAKKRKKKSYTTP 160
>gi|8163900|gb|AAF73908.1|AF227253_1 polyprotein [bovine viral diarrhea virus-1 strain CP821]
Length = 218
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 45/75 (60%), Gaps = 3/75 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M + VKTL G EI ++P+D V +K+ +E+ K+ P QQ LI++GK + DE T A
Sbjct: 86 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEE---KEGIPPQQQRLIYSGKQMNDEKTAA 142
Query: 61 DNKVSEDGFLVVMLS 75
D K+ L ++L+
Sbjct: 143 DYKILGGSVLHLVLA 157
>gi|390468883|ref|XP_003734018.1| PREDICTED: magnesium-dependent phosphatase 1 isoform 2
[Callithrix jacchus]
Length = 214
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 40/64 (62%), Gaps = 3/64 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M + VKTL G EI ++P+D V +K+ +E+ K+ P QQ LI++GK + DE T A
Sbjct: 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEE---KEGIPPQQQRLIYSGKQMNDEKTAA 57
Query: 61 DNKV 64
D K+
Sbjct: 58 DYKI 61
>gi|430800751|pdb|3V6C|B Chain B, Crystal Structure Of Usp2 In Complex With Mutated
Ubiquitin
Length = 91
Score = 52.8 bits (125), Expect = 2e-04, Method: Composition-based stats.
Identities = 30/74 (40%), Positives = 45/74 (60%), Gaps = 3/74 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ V TL G+H + V+PSDT+ VK I+D K+ P QQ LI GK L+D TL+
Sbjct: 18 MQIFVNTLTGTHITLEVEPSDTIENVKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLS 74
Query: 61 DNKVSEDGFLVVML 74
D + ++ L ++L
Sbjct: 75 DYNIQKESTLHLVL 88
>gi|6679034|ref|NP_032709.1| NEDD8 precursor [Mus musculus]
gi|20302051|ref|NP_620233.1| NEDD8 precursor [Rattus norvegicus]
gi|354479810|ref|XP_003502102.1| PREDICTED: NEDD8-like [Cricetulus griseus]
gi|1171685|sp|P29595.2|NEDD8_MOUSE RecName: Full=NEDD8; AltName: Full=Neddylin; AltName: Full=Neural
precursor cell expressed developmentally down-regulated
protein 8; Short=NEDD-8; AltName: Full=Ubiquitin-like
protein Nedd8; Flags: Precursor
gi|81174953|sp|Q71UE8.1|NEDD8_RAT RecName: Full=NEDD8; AltName: Full=Neddylin; AltName:
Full=Ubiquitin-like protein NEDD8; Flags: Precursor
gi|425487|dbj|BAA01719.1| ubiquitin like protein [Mus musculus]
gi|3747105|gb|AAC64189.1| ubiquitin-like protein [Rattus norvegicus]
gi|13435504|gb|AAH04625.1| Neural precursor cell expressed, developmentally down-regulated
gene 8 [Mus musculus]
gi|54038559|gb|AAH84728.1| Neural precursor cell expressed, developmentally down-regulated 8
[Rattus norvegicus]
gi|74144845|dbj|BAE27394.1| unnamed protein product [Mus musculus]
gi|74151065|dbj|BAE27660.1| unnamed protein product [Mus musculus]
gi|148704312|gb|EDL36259.1| neural precursor cell expressed, developmentally down-regulated
gene 8, isoform CRA_a [Mus musculus]
gi|148704314|gb|EDL36261.1| neural precursor cell expressed, developmentally down-regulated
gene 8, isoform CRA_a [Mus musculus]
gi|149063992|gb|EDM14262.1| neural precursor cell expressed, developmentally down-regulated
gene 8, isoform CRA_a [Rattus norvegicus]
gi|149063994|gb|EDM14264.1| neural precursor cell expressed, developmentally down-regulated
gene 8, isoform CRA_a [Rattus norvegicus]
gi|344255445|gb|EGW11549.1| NEDD8 [Cricetulus griseus]
Length = 81
Score = 52.8 bits (125), Expect = 2e-04, Method: Composition-based stats.
Identities = 27/64 (42%), Positives = 40/64 (62%), Gaps = 3/64 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M + VKTL G EI ++P+D V +K+ +E+ K+ P QQ LI++GK + DE T A
Sbjct: 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEE---KEGIPPQQQRLIYSGKQMNDEKTAA 57
Query: 61 DNKV 64
D K+
Sbjct: 58 DYKI 61
>gi|159112981|ref|XP_001706718.1| Ubiquitin [Giardia lamblia ATCC 50803]
gi|157434817|gb|EDO79044.1| Ubiquitin [Giardia lamblia ATCC 50803]
Length = 82
Score = 52.8 bits (125), Expect = 2e-04, Method: Composition-based stats.
Identities = 29/74 (39%), Positives = 44/74 (59%), Gaps = 3/74 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+P+DT+ +K I+D K+ P QQ LI +GK L+D TL
Sbjct: 6 MQIFVKTLTGKTVTLEVEPTDTINNIKAKIQD---KEGIPPDQQRLIFSGKQLEDNRTLQ 62
Query: 61 DNKVSEDGFLVVML 74
D + +D L ++L
Sbjct: 63 DYSIQKDATLHLVL 76
>gi|208566|gb|AAA72700.1| synthetic ubiquitin [synthetic construct]
Length = 76
Score = 52.8 bits (125), Expect = 2e-04, Method: Composition-based stats.
Identities = 30/74 (40%), Positives = 44/74 (59%), Gaps = 3/74 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D K+ P QQ LI GK L+D TL+
Sbjct: 1 MQICVKTLTGKTITLEVEPSDTIENVKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLS 57
Query: 61 DNKVSEDGFLVVML 74
D + ++ L ++L
Sbjct: 58 DYNIQKESCLHLVL 71
>gi|168036461|ref|XP_001770725.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162677943|gb|EDQ64407.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 153
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/143 (28%), Positives = 61/143 (42%), Gaps = 14/143 (9%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+ SD++ VK I+D K+ P QQ LI GK L+DE TLA
Sbjct: 1 MQIFVKTLTGKTITLEVESSDSIQNVKTKIQD---KEGIPPDQQRLIFAGKQLEDERTLA 57
Query: 61 DNKVSEDGFLVVMLS-------KSKTLGSAGASSAQPAHTTPPTTAPSSNSTPPQEASVP 113
D + ++ L ++L K KTL P T ++ +P
Sbjct: 58 DYNIQKESTLHLVLRLRGGTMIKVKTL----TGKEIEIDIEPYDTIERIKERVEEKEGIP 113
Query: 114 PPAPTPSIPASNVTSNVTAANAN 136
P + + TA + N
Sbjct: 114 PVQQRLIFAGKQMNDDKTARDYN 136
Score = 43.5 bits (101), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 40/73 (54%), Gaps = 3/73 (4%)
Query: 3 LTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADN 62
+ VKTL G EI ++P DT+ +K+ +E+ K+ P QQ LI GK + D+ T D
Sbjct: 79 IKVKTLTGKEIEIDIEPYDTIERIKERVEE---KEGIPPVQQRLIFAGKQMNDDKTARDY 135
Query: 63 KVSEDGFLVVMLS 75
+ L ++L+
Sbjct: 136 NIEGGSVLHLVLA 148
>gi|403264118|ref|XP_003924339.1| PREDICTED: NEDD8 [Saimiri boliviensis boliviensis]
Length = 81
Score = 52.8 bits (125), Expect = 2e-04, Method: Composition-based stats.
Identities = 29/75 (38%), Positives = 45/75 (60%), Gaps = 3/75 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M + VKTL G EI ++P+D V +K+ +E+ K+ P QQ LI++GK + DE T A
Sbjct: 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEE---KEGIPPQQQRLIYSGKQMNDEKTAA 57
Query: 61 DNKVSEDGFLVVMLS 75
D K+ L ++L+
Sbjct: 58 DYKILGGSVLHLVLA 72
>gi|13021896|gb|AAK11574.1| humanized ubiquitin/L1 delta/H-2 Db CTL epitope hybrid protein
[synthetic construct]
Length = 558
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 45/149 (30%), Positives = 70/149 (46%), Gaps = 31/149 (20%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D K+ P QQ LI GK L+D TL+
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLS 57
Query: 61 DNKVSEDGFLVVMLSKSKTLGSAGASSAQPAHTTPPTTAPSSNSTPPQEASVPPPAPTPS 120
D + ++ L ++L + +P+ +T VPPP P
Sbjct: 58 DYNIQKESTLHLVLRLR--------GAWRPSDST---------------VYVPPPNPVSK 94
Query: 121 IPASNVTSNVTAANANSDTYGQAASNLVA 149
+ A++ + VT N Y ++S L+A
Sbjct: 95 VVATD--AYVTRTNI---FYHASSSRLLA 118
>gi|11528469|gb|AAG37291.1| humanized L1/ubiqutin hybrid protein [synthetic construct]
Length = 575
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 45/149 (30%), Positives = 70/149 (46%), Gaps = 31/149 (20%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D K+ P QQ LI GK L+D TL+
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLS 57
Query: 61 DNKVSEDGFLVVMLSKSKTLGSAGASSAQPAHTTPPTTAPSSNSTPPQEASVPPPAPTPS 120
D + ++ L ++L + +P+ +T VPPP P
Sbjct: 58 DYNIQKESTLHLVLRLR--------GAWRPSDST---------------VYVPPPNPVSK 94
Query: 121 IPASNVTSNVTAANANSDTYGQAASNLVA 149
+ A++ + VT N Y ++S L+A
Sbjct: 95 VVATD--AYVTRTNI---FYHASSSRLLA 118
>gi|358056787|dbj|GAA97450.1| hypothetical protein E5Q_04129 [Mixia osmundae IAM 14324]
Length = 434
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/60 (43%), Positives = 39/60 (65%), Gaps = 3/60 (5%)
Query: 147 LVAGNDLEQTIQQIMDMGGGTWDKETVTRALQAAYNNPERAVDYLYSGIPETAEVAVPVA 206
+ G LE +I +++ MG + +E RA++A+YNNP RAV+YL +GIP A+ A P A
Sbjct: 186 FLTGARLEASIAEMVSMG---FPREDCQRAMRASYNNPHRAVEYLMNGIPAEAQTAPPRA 242
>gi|164510074|emb|CAJ32641.1| ubiquitin [Hediste diversicolor]
Length = 76
Score = 52.8 bits (125), Expect = 2e-04, Method: Composition-based stats.
Identities = 32/77 (41%), Positives = 46/77 (59%), Gaps = 3/77 (3%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D K+ P QQ LI GK L+D TL+
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKTKIQD---KEGIPPDQQRLIFAGKQLEDARTLS 57
Query: 61 DNKVSEDGFLVVMLSKS 77
D + ++ L ++LS S
Sbjct: 58 DYNIQKESTLHLVLSLS 74
>gi|72172080|gb|AAZ66786.1| polyubiquitin [Ictalurus punctatus]
Length = 85
Score = 52.8 bits (125), Expect = 2e-04, Method: Composition-based stats.
Identities = 30/74 (40%), Positives = 44/74 (59%), Gaps = 3/74 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D K+ P QQ LI GK L+D TL+
Sbjct: 9 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLS 65
Query: 61 DNKVSEDGFLVVML 74
D + ++ L ++L
Sbjct: 66 DYNIQKESTLHLVL 79
>gi|430800753|pdb|3V6E|B Chain B, Crystal Structure Of Usp2 And A Mutant Form Of Ubiquitin
Length = 91
Score = 52.8 bits (125), Expect = 2e-04, Method: Composition-based stats.
Identities = 30/74 (40%), Positives = 44/74 (59%), Gaps = 3/74 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ V TL G H + V+PSDT+ VK I+D K+ P QQ LI GK L+D TL+
Sbjct: 18 MQIFVNTLSGKHITLEVEPSDTIENVKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLS 74
Query: 61 DNKVSEDGFLVVML 74
D + ++ L ++L
Sbjct: 75 DYNIQKESTLHLVL 88
>gi|196049829|pdb|3DBL|I Chain I, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190wt-Nedd8ala72gln)
gi|196049832|pdb|3DBL|J Chain J, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190wt-Nedd8ala72gln)
gi|196049835|pdb|3DBL|K Chain K, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190wt-Nedd8ala72gln)
gi|196049838|pdb|3DBL|L Chain L, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190wt-Nedd8ala72gln)
Length = 88
Score = 52.8 bits (125), Expect = 2e-04, Method: Composition-based stats.
Identities = 27/64 (42%), Positives = 40/64 (62%), Gaps = 3/64 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M + VKTL G EI ++P+D V +K+ +E+ K+ P QQ LI++GK + DE T A
Sbjct: 13 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEE---KEGIPPQQQRLIYSGKQMNDEKTAA 69
Query: 61 DNKV 64
D K+
Sbjct: 70 DYKI 73
>gi|15320680|ref|NP_203192.1| UBI [Epiphyas postvittana NPV]
gi|15213148|gb|AAK85587.1| UBI [Epiphyas postvittana NPV]
Length = 76
Score = 52.8 bits (125), Expect = 2e-04, Method: Composition-based stats.
Identities = 30/74 (40%), Positives = 43/74 (58%), Gaps = 3/74 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G I +P DTV VK+ I D K+ P QQ LI+ GK L+D T+A
Sbjct: 1 MQIFVKTLTGKSITIETEPGDTVAQVKQQIAD---KEGVPVDQQRLIYAGKQLEDCKTMA 57
Query: 61 DNKVSEDGFLVVML 74
D + ++ L ++L
Sbjct: 58 DYNIQKESTLHMVL 71
>gi|399138609|gb|AFP23394.1| neural precursor cell expressed developmentally down-regulated 8
[Scylla paramamosain]
Length = 79
Score = 52.8 bits (125), Expect = 2e-04, Method: Composition-based stats.
Identities = 32/82 (39%), Positives = 46/82 (56%), Gaps = 3/82 (3%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M + VKTL G EI ++P+D V +K+ +E+ K+ P QQ LI +GK + DE T A
Sbjct: 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEE---KEGIPPPQQRLIFSGKQMNDEKTAA 57
Query: 61 DNKVSEDGFLVVMLSKSKTLGS 82
D KV L ++L+ L S
Sbjct: 58 DYKVQGGSVLHLVLALRGGLSS 79
>gi|510476|emb|CAA52419.1| ubiquitin unit IV [Artemia franciscana]
Length = 76
Score = 52.8 bits (125), Expect = 2e-04, Method: Composition-based stats.
Identities = 31/74 (41%), Positives = 44/74 (59%), Gaps = 3/74 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D QG P QQ LI GK L+D TL+
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKQG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 61 DNKVSEDGFLVVML 74
D + ++ L ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|40556034|ref|NP_955119.1| CNPV096 ubiquitin [Canarypox virus]
gi|40233859|gb|AAR83442.1| CNPV096 ubiquitin [Canarypox virus]
Length = 85
Score = 52.8 bits (125), Expect = 2e-04, Method: Composition-based stats.
Identities = 31/74 (41%), Positives = 44/74 (59%), Gaps = 3/74 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDTV VK I+D K+ P QQ LI GK L+D TL+
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTVENVKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLS 57
Query: 61 DNKVSEDGFLVVML 74
D + ++ L ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|169247557|gb|ACA51615.1| ubiquitin [Monochamus alternatus]
Length = 76
Score = 52.8 bits (125), Expect = 2e-04, Method: Composition-based stats.
Identities = 31/75 (41%), Positives = 45/75 (60%), Gaps = 3/75 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D K+ P QQ LI GK L+D TL+
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLS 57
Query: 61 DNKVSEDGFLVVMLS 75
D + ++ L ++LS
Sbjct: 58 DYNIQKESTLHLVLS 72
>gi|403287885|ref|XP_003935153.1| PREDICTED: polyubiquitin-B-like isoform 1 [Saimiri boliviensis
boliviensis]
gi|403287889|ref|XP_003935155.1| PREDICTED: polyubiquitin-B-like isoform 3 [Saimiri boliviensis
boliviensis]
Length = 77
Score = 52.8 bits (125), Expect = 2e-04, Method: Composition-based stats.
Identities = 30/74 (40%), Positives = 43/74 (58%), Gaps = 3/74 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D K+ P QQ LI GK L+D TL
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQD---KEGIPHDQQRLIFAGKQLEDGRTLP 57
Query: 61 DNKVSEDGFLVVML 74
D + ++ L ++L
Sbjct: 58 DYNIQKESTLYLVL 71
>gi|327493259|gb|AEA86336.1| putative DNA repair protein [Solanum nigrum]
Length = 172
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/60 (58%), Positives = 41/60 (68%)
Query: 205 VAHFPASQAAETGAAGAAPVSGVPNSSPLNMFPQETLSGAPAGGLGSLDFLRNNQQVWSL 264
VA + AA T A AP SG PNS+PLN+FPQE ++GA GLGSLDFL NNQQ +L
Sbjct: 1 VARGGVNSAAGTTAPPTAPSSGTPNSAPLNLFPQENVAGAGGAGLGSLDFLMNNQQFQAL 60
>gi|281413215|gb|ADA69136.1| ubiquitin [Chilo suppressalis]
Length = 76
Score = 52.4 bits (124), Expect = 2e-04, Method: Composition-based stats.
Identities = 31/75 (41%), Positives = 45/75 (60%), Gaps = 3/75 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D K+ P QQ LI GK L+D TL+
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLS 57
Query: 61 DNKVSEDGFLVVMLS 75
D + ++ L ++LS
Sbjct: 58 DYDIQKESTLHLVLS 72
>gi|441628709|ref|XP_003275965.2| PREDICTED: polyubiquitin-C-like [Nomascus leucogenys]
Length = 181
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/82 (41%), Positives = 47/82 (57%), Gaps = 5/82 (6%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D K+ P QQ LI GK L+D TL+
Sbjct: 42 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLS 98
Query: 61 DNKV-SEDGF-LVVMLSKSKTL 80
D + E GF ++V L K +
Sbjct: 99 DYNIQKETGFHMLVRLKGGKRV 120
>gi|403277587|ref|XP_003930438.1| PREDICTED: ubiquitin-40S ribosomal protein S27a-like [Saimiri
boliviensis boliviensis]
Length = 156
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/95 (35%), Positives = 51/95 (53%), Gaps = 7/95 (7%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D +G P QQ LI GK L+D TL+
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 61 DNKVSEDGFLVVMLSKSKTLGSAGASSAQPAHTTP 95
D + ++ L ++L L + ++TTP
Sbjct: 58 DYNIQKESTLHLVLR----LCGGAKKRKKKSYTTP 88
>gi|195114996|ref|XP_002002053.1| GI17172 [Drosophila mojavensis]
gi|193912628|gb|EDW11495.1| GI17172 [Drosophila mojavensis]
Length = 83
Score = 52.4 bits (124), Expect = 2e-04, Method: Composition-based stats.
Identities = 29/75 (38%), Positives = 44/75 (58%), Gaps = 3/75 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M + VKTL G EI ++P+D V +K+ +E+ K+ P QQ LI +GK + D+ T A
Sbjct: 1 MLIKVKTLTGKEIEIDIEPTDKVDRIKERVEE---KEGIPPQQQRLIFSGKQMNDDKTAA 57
Query: 61 DNKVSEDGFLVVMLS 75
D KV L ++L+
Sbjct: 58 DYKVQGGSVLHLVLA 72
>gi|194759564|ref|XP_001962017.1| GF14648 [Drosophila ananassae]
gi|190615714|gb|EDV31238.1| GF14648 [Drosophila ananassae]
Length = 81
Score = 52.4 bits (124), Expect = 2e-04, Method: Composition-based stats.
Identities = 29/75 (38%), Positives = 44/75 (58%), Gaps = 3/75 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M + VKTL G EI ++P+D V +K+ +E+ K+ P QQ LI +GK + D+ T A
Sbjct: 1 MLIKVKTLTGKEIEIDIEPTDKVDRIKERVEE---KEGIPPQQQRLIFSGKQMNDDKTAA 57
Query: 61 DNKVSEDGFLVVMLS 75
D KV L ++L+
Sbjct: 58 DYKVQGGSVLHLVLA 72
>gi|39725571|dbj|BAD04938.1| poryprotein [Bovine viral diarrhea virus T-20]
Length = 2420
Score = 52.4 bits (124), Expect = 2e-04, Method: Composition-based stats.
Identities = 30/74 (40%), Positives = 44/74 (59%), Gaps = 3/74 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D K+ P QQ LI GK L+D TL+
Sbjct: 1464 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLS 1520
Query: 61 DNKVSEDGFLVVML 74
D + ++ L ++L
Sbjct: 1521 DYNIQKESTLHLVL 1534
>gi|293353099|ref|XP_002728156.1| PREDICTED: ubiquitin-60S ribosomal protein L40-like [Rattus
norvegicus]
gi|392333018|ref|XP_003752767.1| PREDICTED: ubiquitin-60S ribosomal protein L40-like [Rattus
norvegicus]
Length = 77
Score = 52.4 bits (124), Expect = 2e-04, Method: Composition-based stats.
Identities = 31/74 (41%), Positives = 45/74 (60%), Gaps = 3/74 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D K++ P QQ LI GK L+D TL+
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQD---KESIPPDQQRLIFAGKQLEDGRTLS 57
Query: 61 DNKVSEDGFLVVML 74
D + E+ L ++L
Sbjct: 58 DYSIQEESTLHLVL 71
>gi|293340164|ref|XP_002724552.1| PREDICTED: ubiquitin-60S ribosomal protein L40-like [Rattus
norvegicus]
gi|293351577|ref|XP_002727767.1| PREDICTED: ubiquitin-60S ribosomal protein L40-like [Rattus
norvegicus]
gi|149052926|gb|EDM04743.1| polyubiquitin [Rattus norvegicus]
Length = 77
Score = 52.4 bits (124), Expect = 2e-04, Method: Composition-based stats.
Identities = 30/74 (40%), Positives = 44/74 (59%), Gaps = 3/74 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M+ +VKTL G + V+PSDT+ VK I+D K+ P QQ LI GK L+D TL+
Sbjct: 1 MQFSVKTLTGKTITLEVEPSDTIENVKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLS 57
Query: 61 DNKVSEDGFLVVML 74
D + ++ L ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|154416733|ref|XP_001581388.1| ubiquitin [Trichomonas vaginalis G3]
gi|121915615|gb|EAY20402.1| ubiquitin, putative [Trichomonas vaginalis G3]
Length = 166
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/91 (36%), Positives = 49/91 (53%), Gaps = 7/91 (7%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G H + V+P+D + VK I+D K+ P QQ LI GK L+D TL
Sbjct: 35 MQIFVKTLTGKHITLEVEPTDRIEDVKAKIQD---KEGIPPDQQRLIFAGKQLEDGNTLQ 91
Query: 61 DNKVSEDGFLVVMLSKSKTLGSAGASSAQPA 91
D + +D L ++L L G + +P+
Sbjct: 92 DYSIQKDSTLHLVLR----LRGGGKEAYEPS 118
>gi|119624911|gb|EAX04506.1| ubiquitin B, isoform CRA_e [Homo sapiens]
Length = 152
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 44/74 (59%), Gaps = 3/74 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D K+ P QQ LI GK L+D TL+
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLS 57
Query: 61 DNKVSEDGFLVVML 74
D + ++ L ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|158771|gb|AAA29006.1| ubiquitin, partial [Drosophila melanogaster]
gi|225323|prf||1212243H ubiquitin S7(1)
Length = 76
Score = 52.4 bits (124), Expect = 2e-04, Method: Composition-based stats.
Identities = 30/74 (40%), Positives = 44/74 (59%), Gaps = 3/74 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D K+ P QQ LI GK L+D TL+
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQD---KEGIPPDQQRLIFAGKXLEDGRTLS 57
Query: 61 DNKVSEDGFLVVML 74
D + ++ L ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|39725569|dbj|BAD04937.1| poryprotein [Bovine viral diarrhea virus 190cp]
Length = 3020
Score = 52.4 bits (124), Expect = 2e-04, Method: Composition-based stats.
Identities = 30/74 (40%), Positives = 44/74 (59%), Gaps = 3/74 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D K+ P QQ LI GK L+D TL+
Sbjct: 1946 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLS 2002
Query: 61 DNKVSEDGFLVVML 74
D + ++ L ++L
Sbjct: 2003 DYNIQKESTLHLVL 2016
>gi|449300809|gb|EMC96821.1| hypothetical protein BAUCODRAFT_490647 [Baudoinia compniacensis
UAMH 10762]
Length = 199
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/110 (33%), Positives = 55/110 (50%), Gaps = 4/110 (3%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+ SDT+ VK I+D +G P QQ LI GK L+D TL+
Sbjct: 66 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 122
Query: 61 DNKVSEDGFL-VVMLSKSKTLGSAGASSAQPAHTTPPTTAPSSNSTPPQE 109
D + ++ L +V+ + L SSA + P + PP+E
Sbjct: 123 DYNIQKESTLHLVLRLRGDDLPQVLRSSAAEGNELPEEEVWAHQPAPPEE 172
>gi|442754265|gb|JAA69292.1| Putative nedd8 [Ixodes ricinus]
Length = 92
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 45/75 (60%), Gaps = 3/75 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M + VKTL G EI ++P+D V +K+ +E+ +G P QQ LI +GK + D+ T A
Sbjct: 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEG---IPPAQQRLIFSGKQMNDDKTAA 57
Query: 61 DNKVSEDGFLVVMLS 75
D KV+ L ++L+
Sbjct: 58 DYKVTGGSVLHLVLA 72
>gi|158767|gb|AAA29004.1| ubiquitin, partial [Drosophila melanogaster]
gi|225321|prf||1212243F ubiquitin S6(1)
Length = 76
Score = 52.4 bits (124), Expect = 2e-04, Method: Composition-based stats.
Identities = 30/74 (40%), Positives = 44/74 (59%), Gaps = 3/74 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D +G P QQ LI GK L+D TL+
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGX---PPDQQRLIFAGKXLEDGRTLS 57
Query: 61 DNKVSEDGFLVVML 74
D + ++ L ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|208568|gb|AAA72701.1| synthetic ubiquitin [synthetic construct]
Length = 76
Score = 52.4 bits (124), Expect = 2e-04, Method: Composition-based stats.
Identities = 30/74 (40%), Positives = 44/74 (59%), Gaps = 3/74 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D K+ P QQ LI GK L+D TL+
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLS 57
Query: 61 DNKVSEDGFLVVML 74
D + ++ L ++L
Sbjct: 58 DYNIQKESCLHLVL 71
>gi|195344944|ref|XP_002039036.1| GM17051 [Drosophila sechellia]
gi|194134166|gb|EDW55682.1| GM17051 [Drosophila sechellia]
Length = 84
Score = 52.4 bits (124), Expect = 2e-04, Method: Composition-based stats.
Identities = 29/75 (38%), Positives = 44/75 (58%), Gaps = 3/75 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M + VKTL G EI ++P+D V +K+ +E+ K+ P QQ LI +GK + D+ T A
Sbjct: 1 MLIKVKTLTGKEIEIDIEPTDKVDRIKERVEE---KEGIPPQQQRLIFSGKQMNDDKTAA 57
Query: 61 DNKVSEDGFLVVMLS 75
D KV L ++L+
Sbjct: 58 DYKVQGGSVLHLVLA 72
>gi|296199681|ref|XP_002747252.1| PREDICTED: ubiquitin-40S ribosomal protein S27a-like [Callithrix
jacchus]
Length = 156
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/95 (35%), Positives = 51/95 (53%), Gaps = 7/95 (7%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D +G P QQ LI GK L+D TL+
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 61 DNKVSEDGFLVVMLSKSKTLGSAGASSAQPAHTTP 95
D + ++ L ++L L + ++TTP
Sbjct: 58 DYNIQKESTLHLVLR----LRGGAKKRKKRSYTTP 88
>gi|112983984|ref|NP_001036839.1| polyubiquitin [Bombyx mori]
gi|4587236|dbj|BAA76676.1| polyubiquitin [Bombyx mori]
Length = 913
Score = 52.4 bits (124), Expect = 2e-04, Method: Composition-based stats.
Identities = 30/74 (40%), Positives = 44/74 (59%), Gaps = 3/74 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D K+ P QQ LI GK L+D TL+
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLS 57
Query: 61 DNKVSEDGFLVVML 74
D + ++ L ++L
Sbjct: 58 DYNIQKESTLHLVL 71
Score = 48.9 bits (115), Expect = 0.002, Method: Composition-based stats.
Identities = 29/74 (39%), Positives = 43/74 (58%), Gaps = 3/74 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+ SDT+ VK I+D K+ P QQ LI GK L+D TL+
Sbjct: 77 MQIFVKTLTGKTITLEVEASDTIENVKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLS 133
Query: 61 DNKVSEDGFLVVML 74
D + ++ L ++L
Sbjct: 134 DYNIQKESTLHLVL 147
Score = 48.9 bits (115), Expect = 0.002, Method: Composition-based stats.
Identities = 29/74 (39%), Positives = 43/74 (58%), Gaps = 3/74 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+ SDT+ VK I+D K+ P QQ LI GK L+D TL+
Sbjct: 153 MQIFVKTLTGKTITLEVEASDTIENVKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLS 209
Query: 61 DNKVSEDGFLVVML 74
D + ++ L ++L
Sbjct: 210 DYNIQKESTLHLVL 223
Score = 48.9 bits (115), Expect = 0.002, Method: Composition-based stats.
Identities = 29/74 (39%), Positives = 43/74 (58%), Gaps = 3/74 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+ SDT+ VK I+D K+ P QQ LI GK L+D TL+
Sbjct: 229 MQIFVKTLTGKTITLEVEASDTIENVKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLS 285
Query: 61 DNKVSEDGFLVVML 74
D + ++ L ++L
Sbjct: 286 DYNIQKESTLHLVL 299
Score = 48.9 bits (115), Expect = 0.002, Method: Composition-based stats.
Identities = 29/74 (39%), Positives = 43/74 (58%), Gaps = 3/74 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+ SDT+ VK I+D K+ P QQ LI GK L+D TL+
Sbjct: 305 MQIFVKTLTGKTITLEVEASDTIENVKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLS 361
Query: 61 DNKVSEDGFLVVML 74
D + ++ L ++L
Sbjct: 362 DYNIQKESTLHLVL 375
Score = 48.9 bits (115), Expect = 0.002, Method: Composition-based stats.
Identities = 29/74 (39%), Positives = 43/74 (58%), Gaps = 3/74 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+ SDT+ VK I+D K+ P QQ LI GK L+D TL+
Sbjct: 381 MQIFVKTLTGKTITLEVEASDTIENVKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLS 437
Query: 61 DNKVSEDGFLVVML 74
D + ++ L ++L
Sbjct: 438 DYNIQKESTLHLVL 451
Score = 48.9 bits (115), Expect = 0.002, Method: Composition-based stats.
Identities = 29/74 (39%), Positives = 43/74 (58%), Gaps = 3/74 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+ SDT+ VK I+D K+ P QQ LI GK L+D TL+
Sbjct: 457 MQIFVKTLTGKTITLEVEASDTIENVKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLS 513
Query: 61 DNKVSEDGFLVVML 74
D + ++ L ++L
Sbjct: 514 DYNIQKESTLHLVL 527
Score = 48.9 bits (115), Expect = 0.002, Method: Composition-based stats.
Identities = 29/74 (39%), Positives = 43/74 (58%), Gaps = 3/74 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+ SDT+ VK I+D K+ P QQ LI GK L+D TL+
Sbjct: 609 MQIFVKTLTGKTITLEVEASDTIENVKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLS 665
Query: 61 DNKVSEDGFLVVML 74
D + ++ L ++L
Sbjct: 666 DYNIQKESTLHLVL 679
Score = 48.9 bits (115), Expect = 0.002, Method: Composition-based stats.
Identities = 29/74 (39%), Positives = 43/74 (58%), Gaps = 3/74 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+ SDT+ VK I+D K+ P QQ LI GK L+D TL+
Sbjct: 685 MQIFVKTLTGKTITLEVEASDTIENVKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLS 741
Query: 61 DNKVSEDGFLVVML 74
D + ++ L ++L
Sbjct: 742 DYNIQKESTLHLVL 755
Score = 48.9 bits (115), Expect = 0.002, Method: Composition-based stats.
Identities = 29/74 (39%), Positives = 43/74 (58%), Gaps = 3/74 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+ SDT+ VK I+D K+ P QQ LI GK L+D TL+
Sbjct: 761 MQIFVKTLTGKTITLEVEASDTIENVKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLS 817
Query: 61 DNKVSEDGFLVVML 74
D + ++ L ++L
Sbjct: 818 DYNIQKESTLHLVL 831
Score = 48.9 bits (115), Expect = 0.002, Method: Composition-based stats.
Identities = 29/74 (39%), Positives = 43/74 (58%), Gaps = 3/74 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+ SDT+ VK I+D K+ P QQ LI GK L+D TL+
Sbjct: 837 MQIFVKTLTGKTITLEVEASDTIENVKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLS 893
Query: 61 DNKVSEDGFLVVML 74
D + ++ L ++L
Sbjct: 894 DYNIQKESTLHLVL 907
Score = 47.0 bits (110), Expect = 0.008, Method: Composition-based stats.
Identities = 28/74 (37%), Positives = 43/74 (58%), Gaps = 3/74 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+ SDT+ VK I+D K+ P QQ LI GK L++ TL+
Sbjct: 533 MQIFVKTLTGKTITLEVEASDTIENVKAKIQD---KEGIPPDQQRLIFAGKQLENGRTLS 589
Query: 61 DNKVSEDGFLVVML 74
D + ++ L ++L
Sbjct: 590 DYNIQKESTLHLVL 603
>gi|9372|emb|CAA49657.1| ubiquitin [Giardia intestinalis]
Length = 76
Score = 52.4 bits (124), Expect = 2e-04, Method: Composition-based stats.
Identities = 29/74 (39%), Positives = 44/74 (59%), Gaps = 3/74 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+P+DT+ +K I+D K+ P QQ LI +GK L+D TL
Sbjct: 1 MQIFVKTLTGKTVTLEVEPTDTINNIKAKIQD---KEGIPPDQQRLIFSGKQLEDNRTLQ 57
Query: 61 DNKVSEDGFLVVML 74
D + +D L ++L
Sbjct: 58 DYSIQKDATLHLVL 71
>gi|208564|gb|AAA72699.1| synthetic ubiquitin [synthetic construct]
Length = 76
Score = 52.4 bits (124), Expect = 2e-04, Method: Composition-based stats.
Identities = 30/74 (40%), Positives = 44/74 (59%), Gaps = 3/74 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D K+ P QQ LI GK L+D TL+
Sbjct: 1 MQICVKTLTGKTICLEVEPSDTIENVKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLS 57
Query: 61 DNKVSEDGFLVVML 74
D + ++ L ++L
Sbjct: 58 DYNIQKESCLHLVL 71
>gi|442570892|pdb|4I6L|B Chain B, Crystal Structure Of Otub1 In Complex With Ubiquitin
Variant
Length = 76
Score = 52.4 bits (124), Expect = 2e-04, Method: Composition-based stats.
Identities = 29/74 (39%), Positives = 44/74 (59%), Gaps = 3/74 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D K+ P QQ L+ K L+D TL+
Sbjct: 3 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQD---KEGIPPDQQKLLFARKQLEDGRTLS 59
Query: 61 DNKVSEDGFLVVML 74
D + ++ FL ++L
Sbjct: 60 DYNIHKESFLYLVL 73
>gi|397506460|ref|XP_003823745.1| PREDICTED: ubiquitin-40S ribosomal protein S27a-like [Pan
paniscus]
Length = 156
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/95 (35%), Positives = 51/95 (53%), Gaps = 7/95 (7%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D +G P QQ LI GK L+D TL+
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 61 DNKVSEDGFLVVMLSKSKTLGSAGASSAQPAHTTP 95
D + ++ L ++L L + ++TTP
Sbjct: 58 DYNIQKESTLHLVLR----LCGGAKKRKKKSYTTP 88
>gi|109088828|ref|XP_001098135.1| PREDICTED: NEDD8 isoform 1 [Macaca mulatta]
Length = 81
Score = 52.0 bits (123), Expect = 2e-04, Method: Composition-based stats.
Identities = 28/75 (37%), Positives = 45/75 (60%), Gaps = 3/75 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M + VKTL G +I ++P+D V +K+ +E+ K+ P QQ LI++GK + DE T A
Sbjct: 1 MLIKVKTLTGEEIDIDIEPTDKVERIKERMEE---KEGIPPQQQRLIYSGKQMNDEKTAA 57
Query: 61 DNKVSEDGFLVVMLS 75
D K+ L ++L+
Sbjct: 58 DYKILSGSVLHLVLA 72
>gi|168036269|ref|XP_001770630.1| predicted protein [Physcomitrella patens subsp. patens]
gi|81230136|dbj|BAE48267.1| putative polyubiquitin [Physcomitrella patens]
gi|81230138|dbj|BAE48268.1| putative polyubiquitin [Physcomitrella patens]
gi|162678151|gb|EDQ64613.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 153
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/143 (28%), Positives = 61/143 (42%), Gaps = 14/143 (9%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+ SD++ VK I+D K+ P QQ LI GK L+DE TLA
Sbjct: 1 MQIFVKTLTGKTITLEVESSDSIQNVKTKIQD---KEGIPPDQQRLIFAGKQLEDERTLA 57
Query: 61 DNKVSEDGFLVVMLS-------KSKTLGSAGASSAQPAHTTPPTTAPSSNSTPPQEASVP 113
D + ++ L ++L K KTL P T ++ +P
Sbjct: 58 DYNIQKESTLHLVLRLRGGTMIKVKTL----TGKEIEIDIEPYDTIERIKERVEEKEGIP 113
Query: 114 PPAPTPSIPASNVTSNVTAANAN 136
P + + TA + N
Sbjct: 114 PVQQRLIFAGKQMNDDKTAKDYN 136
Score = 43.1 bits (100), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 40/73 (54%), Gaps = 3/73 (4%)
Query: 3 LTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADN 62
+ VKTL G EI ++P DT+ +K+ +E+ K+ P QQ LI GK + D+ T D
Sbjct: 79 IKVKTLTGKEIEIDIEPYDTIERIKERVEE---KEGIPPVQQRLIFAGKQMNDDKTAKDY 135
Query: 63 KVSEDGFLVVMLS 75
+ L ++L+
Sbjct: 136 NIEGGSVLHLVLA 148
>gi|391345397|ref|XP_003746973.1| PREDICTED: NEDD8-like [Metaseiulus occidentalis]
Length = 83
Score = 52.0 bits (123), Expect = 2e-04, Method: Composition-based stats.
Identities = 28/75 (37%), Positives = 45/75 (60%), Gaps = 3/75 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M + VKTL G EI ++P+D V +K+ +E+ K+ P QQ LI +GK + D+ T +
Sbjct: 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEE---KEGIPPAQQRLIFSGKQMNDDKTAS 57
Query: 61 DNKVSEDGFLVVMLS 75
D KV+ L ++L+
Sbjct: 58 DYKVTGGSVLHLVLA 72
>gi|355751323|gb|EHH55578.1| hypothetical protein EGM_04813 [Macaca fascicularis]
Length = 156
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/95 (35%), Positives = 51/95 (53%), Gaps = 7/95 (7%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D +G P QQ LI GK L+D TLA
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLA 57
Query: 61 DNKVSEDGFLVVMLSKSKTLGSAGASSAQPAHTTP 95
D + ++ L ++L L + +++TP
Sbjct: 58 DYNIQKESTLHLVLR----LRGGAQKRKKKSYSTP 88
>gi|123454695|ref|XP_001315099.1| polyubiquitin [Trichomonas vaginalis G3]
gi|121897765|gb|EAY02876.1| polyubiquitin, putative [Trichomonas vaginalis G3]
Length = 153
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 44/75 (58%), Gaps = 3/75 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G H + V+P+D + VK I+D K++ P QQ LI GK L+D TL
Sbjct: 1 MQIFVKTLTGKHITLEVEPTDRIEDVKAKIQD---KEDIPPDQQRLIFAGKQLEDGNTLQ 57
Query: 61 DNKVSEDGFLVVMLS 75
D + +D L ++L
Sbjct: 58 DYSIQKDSTLHLVLR 72
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 44/75 (58%), Gaps = 3/75 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G H + V+P+D + VK I+D K++ P QQ LI GK L+D TL
Sbjct: 77 MQIFVKTLTGKHITLEVEPTDRIEDVKAKIQD---KEDIPPDQQRLIFAGKQLEDGNTLQ 133
Query: 61 DNKVSEDGFLVVMLS 75
D + +D L ++L
Sbjct: 134 DYSIQKDSTLHLVLR 148
>gi|197107121|pdb|2K6D|B Chain B, Cin85 Sh3-C Domain In Complex With Ubiquitin
gi|270346285|pdb|2KJH|B Chain B, Nmr Based Structural Model Of The Ubch8-Ubiquitin
Complex
gi|377656643|pdb|4DHJ|D Chain D, The Structure Of A Ceotub1 Ubiquitin Aldehyde Ubc13~ub
Complex
gi|377656651|pdb|4DHJ|H Chain H, The Structure Of A Ceotub1 Ubiquitin Aldehyde Ubc13~ub
Complex
gi|377656655|pdb|4DHZ|E Chain E, The Structure Of HCEOTUB1-Ubiquitin Aldehyde-Ubc13~ub
Length = 76
Score = 52.0 bits (123), Expect = 2e-04, Method: Composition-based stats.
Identities = 30/74 (40%), Positives = 44/74 (59%), Gaps = 3/74 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D K+ P QQ LI GK L+D TL+
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLS 57
Query: 61 DNKVSEDGFLVVML 74
D + ++ L ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|208560|gb|AAA72697.1| synthetic ubiquitin [synthetic construct]
Length = 76
Score = 52.0 bits (123), Expect = 3e-04, Method: Composition-based stats.
Identities = 30/74 (40%), Positives = 44/74 (59%), Gaps = 3/74 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D K+ P QQ LI GK L+D TL+
Sbjct: 1 MQICVKTLTGKTITLEVEPSDTIENVKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLS 57
Query: 61 DNKVSEDGFLVVML 74
D + ++ L ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|148688761|gb|EDL20708.1| mCG1048340 [Mus musculus]
Length = 91
Score = 52.0 bits (123), Expect = 3e-04, Method: Composition-based stats.
Identities = 30/74 (40%), Positives = 44/74 (59%), Gaps = 3/74 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D K+ P QQ LI GK L+D TL+
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLS 57
Query: 61 DNKVSEDGFLVVML 74
D + ++ L ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|397522294|ref|XP_003831209.1| PREDICTED: ubiquitin-40S ribosomal protein S27a-like isoform 1
[Pan paniscus]
gi|397522296|ref|XP_003831210.1| PREDICTED: ubiquitin-40S ribosomal protein S27a-like isoform 2
[Pan paniscus]
gi|397522298|ref|XP_003831211.1| PREDICTED: ubiquitin-40S ribosomal protein S27a-like isoform 3
[Pan paniscus]
gi|119624908|gb|EAX04503.1| ubiquitin B, isoform CRA_b [Homo sapiens]
gi|197129066|gb|ACH45564.1| putative ubiquitin C variant 10 [Taeniopygia guttata]
gi|431914472|gb|ELK15722.1| Ubiquitin [Pteropus alecto]
gi|440894339|gb|ELR46815.1| Polyubiquitin-B [Bos grunniens mutus]
Length = 77
Score = 52.0 bits (123), Expect = 3e-04, Method: Composition-based stats.
Identities = 30/74 (40%), Positives = 44/74 (59%), Gaps = 3/74 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D K+ P QQ LI GK L+D TL+
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLS 57
Query: 61 DNKVSEDGFLVVML 74
D + ++ L ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|164510078|emb|CAJ32643.1| ubiquitin [Littorina littorea]
gi|164510090|emb|CAJ32649.1| ubiquitin [Rimicaris exoculata]
Length = 76
Score = 52.0 bits (123), Expect = 3e-04, Method: Composition-based stats.
Identities = 32/77 (41%), Positives = 46/77 (59%), Gaps = 3/77 (3%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D K+ P QQ LI GK L+D TL+
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIDNVKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLS 57
Query: 61 DNKVSEDGFLVVMLSKS 77
D + ++ L ++LS S
Sbjct: 58 DYNIQKESTLHLVLSLS 74
>gi|350008217|dbj|GAA33178.1| ubiquitin-like protein Nedd8 [Clonorchis sinensis]
Length = 78
Score = 52.0 bits (123), Expect = 3e-04, Method: Composition-based stats.
Identities = 28/75 (37%), Positives = 44/75 (58%), Gaps = 3/75 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M + VKTL G EI ++P+D V +K+ IE+ K+ P QQ LI +GK + DE ++
Sbjct: 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERIEE---KEGIPPPQQRLIFSGKQMHDEKVVS 57
Query: 61 DNKVSEDGFLVVMLS 75
D K+ + ++LS
Sbjct: 58 DYKIQGGSVIHLVLS 72
>gi|253746108|gb|EET01613.1| Ubiquitin [Giardia intestinalis ATCC 50581]
gi|308160019|gb|EFO62531.1| Ubiquitin [Giardia lamblia P15]
Length = 77
Score = 52.0 bits (123), Expect = 3e-04, Method: Composition-based stats.
Identities = 29/74 (39%), Positives = 44/74 (59%), Gaps = 3/74 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+P+DT+ +K I+D K+ P QQ LI +GK L+D TL
Sbjct: 1 MQIFVKTLTGKTVTLEVEPTDTINNIKAKIQD---KEGIPPDQQRLIFSGKQLEDNRTLQ 57
Query: 61 DNKVSEDGFLVVML 74
D + +D L ++L
Sbjct: 58 DYSIQKDATLHLVL 71
>gi|260806905|ref|XP_002598324.1| hypothetical protein BRAFLDRAFT_113894 [Branchiostoma floridae]
gi|229283596|gb|EEN54336.1| hypothetical protein BRAFLDRAFT_113894 [Branchiostoma floridae]
Length = 600
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 39/136 (28%), Positives = 62/136 (45%), Gaps = 9/136 (6%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D K+ P QQ LI GK L+D TL+
Sbjct: 381 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLS 437
Query: 61 DNKVSEDGFLVVMLSKSKTLGSAGASSAQPAHTTPPTTAPSSNSTPPQEASVPPPAPTPS 120
D + ++ L ++ K+ T G +P+ T A + + +PP
Sbjct: 438 DYNIQKESTLHLIFVKTLT-GKTITLEVEPSDTIENVKAKIQD-----KEGIPPDQQRLI 491
Query: 121 IPASNVTSNVTAANAN 136
+ T ++ N
Sbjct: 492 FAGKQLEDGRTLSDYN 507
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 44/75 (58%), Gaps = 3/75 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D K+ P QQ LI GK L+D TL+
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLS 57
Query: 61 DNKVSEDGFLVVMLS 75
D + ++ L ++L
Sbjct: 58 DYNIQKESTLHLVLR 72
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 44/75 (58%), Gaps = 3/75 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D K+ P QQ LI GK L+D TL+
Sbjct: 77 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLS 133
Query: 61 DNKVSEDGFLVVMLS 75
D + ++ L ++L
Sbjct: 134 DYNIQKESTLHLVLR 148
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 44/75 (58%), Gaps = 3/75 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D K+ P QQ LI GK L+D TL+
Sbjct: 153 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLS 209
Query: 61 DNKVSEDGFLVVMLS 75
D + ++ L ++L
Sbjct: 210 DYNIQKESTLHLVLR 224
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 44/75 (58%), Gaps = 3/75 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D K+ P QQ LI GK L+D TL+
Sbjct: 229 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLS 285
Query: 61 DNKVSEDGFLVVMLS 75
D + ++ L ++L
Sbjct: 286 DYNIQKESTLHLVLR 300
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 44/75 (58%), Gaps = 3/75 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D K+ P QQ LI GK L+D TL+
Sbjct: 305 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLS 361
Query: 61 DNKVSEDGFLVVMLS 75
D + ++ L ++L
Sbjct: 362 DYNIQKESTLHLVLR 376
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 44/75 (58%), Gaps = 3/75 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D K+ P QQ LI GK L+D TL+
Sbjct: 524 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLS 580
Query: 61 DNKVSEDGFLVVMLS 75
D + ++ L ++L
Sbjct: 581 DYNIQKESTLHLVLR 595
Score = 47.0 bits (110), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 41/71 (57%), Gaps = 3/71 (4%)
Query: 5 VKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKV 64
VKTL G + V+PSDT+ VK I+D K+ P QQ LI GK L+D TL+D +
Sbjct: 452 VKTLTGKTITLEVEPSDTIENVKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLSDYNI 508
Query: 65 SEDGFLVVMLS 75
++ L ++L
Sbjct: 509 QKESTLHLVLR 519
>gi|296484338|tpg|DAA26453.1| TPA: ubiquitin and ribosomal protein S27a-like [Bos taurus]
Length = 156
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 35/95 (36%), Positives = 51/95 (53%), Gaps = 7/95 (7%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDTV VK I+D +G P QQ LI GK L+D TL+
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTVENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGCTLS 57
Query: 61 DNKVSEDGFLVVMLSKSKTLGSAGASSAQPAHTTP 95
D + ++ L ++L L + ++TTP
Sbjct: 58 DYNMQKESTLHLVLR----LRGVAKKRKKKSYTTP 88
>gi|197129052|gb|ACH45550.1| putative ubiquitin C variant 1 [Taeniopygia guttata]
Length = 245
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 45/75 (60%), Gaps = 3/75 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D +G P QQ LI GK L+D TL+
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 61 DNKVSEDGFLVVMLS 75
D+ + ++ L ++L
Sbjct: 58 DDNIQKESTLHLVLR 72
Score = 50.4 bits (119), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 44/75 (58%), Gaps = 3/75 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D +G P QQ LI GK L+D TL+
Sbjct: 77 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 133
Query: 61 DNKVSEDGFLVVMLS 75
D + ++ L ++L
Sbjct: 134 DYNIQKESTLHLVLR 148
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 39/66 (59%), Gaps = 3/66 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D +G P QQ LI GK L+D TL+
Sbjct: 153 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 209
Query: 61 DNKVSE 66
D + +
Sbjct: 210 DYNIQK 215
>gi|346986300|ref|NP_001231307.1| polyubiquitin [Cricetulus griseus]
gi|2627133|dbj|BAA23488.1| polyubiquitin [Cricetulus griseus]
Length = 1038
Score = 52.0 bits (123), Expect = 3e-04, Method: Composition-based stats.
Identities = 31/74 (41%), Positives = 44/74 (59%), Gaps = 3/74 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D K+ P QQ LI GK L+D TL+
Sbjct: 533 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLS 589
Query: 61 DNKVSEDGFLVVML 74
D V ++ L ++L
Sbjct: 590 DYNVQKESTLHLVL 603
Score = 51.6 bits (122), Expect = 4e-04, Method: Composition-based stats.
Identities = 30/74 (40%), Positives = 44/74 (59%), Gaps = 3/74 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D K+ P QQ LI GK L+D TL+
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLS 57
Query: 61 DNKVSEDGFLVVML 74
D + ++ L ++L
Sbjct: 58 DYNIQKESTLHLVL 71
Score = 51.6 bits (122), Expect = 4e-04, Method: Composition-based stats.
Identities = 30/74 (40%), Positives = 44/74 (59%), Gaps = 3/74 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D K+ P QQ LI GK L+D TL+
Sbjct: 77 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLS 133
Query: 61 DNKVSEDGFLVVML 74
D + ++ L ++L
Sbjct: 134 DYNIQKESTLHLVL 147
Score = 51.6 bits (122), Expect = 4e-04, Method: Composition-based stats.
Identities = 30/74 (40%), Positives = 44/74 (59%), Gaps = 3/74 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D K+ P QQ LI GK L+D TL+
Sbjct: 153 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLS 209
Query: 61 DNKVSEDGFLVVML 74
D + ++ L ++L
Sbjct: 210 DYNIQKESTLHLVL 223
Score = 51.6 bits (122), Expect = 4e-04, Method: Composition-based stats.
Identities = 30/74 (40%), Positives = 44/74 (59%), Gaps = 3/74 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D K+ P QQ LI GK L+D TL+
Sbjct: 229 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLS 285
Query: 61 DNKVSEDGFLVVML 74
D + ++ L ++L
Sbjct: 286 DYNIQKESTLHLVL 299
Score = 51.6 bits (122), Expect = 4e-04, Method: Composition-based stats.
Identities = 30/74 (40%), Positives = 44/74 (59%), Gaps = 3/74 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D K+ P QQ LI GK L+D TL+
Sbjct: 305 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLS 361
Query: 61 DNKVSEDGFLVVML 74
D + ++ L ++L
Sbjct: 362 DYNIQKESTLHLVL 375
Score = 51.6 bits (122), Expect = 4e-04, Method: Composition-based stats.
Identities = 30/74 (40%), Positives = 44/74 (59%), Gaps = 3/74 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D K+ P QQ LI GK L+D TL+
Sbjct: 381 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLS 437
Query: 61 DNKVSEDGFLVVML 74
D + ++ L ++L
Sbjct: 438 DYNIQKESTLHLVL 451
Score = 51.6 bits (122), Expect = 4e-04, Method: Composition-based stats.
Identities = 30/74 (40%), Positives = 44/74 (59%), Gaps = 3/74 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D K+ P QQ LI GK L+D TL+
Sbjct: 457 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLS 513
Query: 61 DNKVSEDGFLVVML 74
D + ++ L ++L
Sbjct: 514 DYNIQKESTLHLVL 527
Score = 51.6 bits (122), Expect = 4e-04, Method: Composition-based stats.
Identities = 30/74 (40%), Positives = 44/74 (59%), Gaps = 3/74 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D K+ P QQ LI GK L+D TL+
Sbjct: 609 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLS 665
Query: 61 DNKVSEDGFLVVML 74
D + ++ L ++L
Sbjct: 666 DYNIQKESTLHLVL 679
Score = 51.6 bits (122), Expect = 4e-04, Method: Composition-based stats.
Identities = 30/74 (40%), Positives = 44/74 (59%), Gaps = 3/74 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D K+ P QQ LI GK L+D TL+
Sbjct: 685 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLS 741
Query: 61 DNKVSEDGFLVVML 74
D + ++ L ++L
Sbjct: 742 DYNIQKESTLHLVL 755
Score = 51.6 bits (122), Expect = 4e-04, Method: Composition-based stats.
Identities = 30/74 (40%), Positives = 44/74 (59%), Gaps = 3/74 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D K+ P QQ LI GK L+D TL+
Sbjct: 761 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLS 817
Query: 61 DNKVSEDGFLVVML 74
D + ++ L ++L
Sbjct: 818 DYNIQKESTLHLVL 831
Score = 51.6 bits (122), Expect = 4e-04, Method: Composition-based stats.
Identities = 30/74 (40%), Positives = 44/74 (59%), Gaps = 3/74 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D K+ P QQ LI GK L+D TL+
Sbjct: 837 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLS 893
Query: 61 DNKVSEDGFLVVML 74
D + ++ L ++L
Sbjct: 894 DYNIQKESTLHLVL 907
Score = 51.6 bits (122), Expect = 4e-04, Method: Composition-based stats.
Identities = 30/74 (40%), Positives = 44/74 (59%), Gaps = 3/74 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D K+ P QQ LI GK L+D TL+
Sbjct: 913 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLS 969
Query: 61 DNKVSEDGFLVVML 74
D + ++ L ++L
Sbjct: 970 DYNIQKESTLHLVL 983
>gi|288812763|gb|ADC54275.1| putative ubiquitin [Hydroides elegans]
Length = 90
Score = 52.0 bits (123), Expect = 3e-04, Method: Composition-based stats.
Identities = 30/74 (40%), Positives = 44/74 (59%), Gaps = 3/74 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D K+ P QQ LI GK L+D TL+
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLS 57
Query: 61 DNKVSEDGFLVVML 74
D + ++ L ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|392340649|ref|XP_003754135.1| PREDICTED: ubiquitin-40S ribosomal protein S27a-like [Rattus
norvegicus]
gi|392348302|ref|XP_003750066.1| PREDICTED: ubiquitin-40S ribosomal protein S27a-like [Rattus
norvegicus]
gi|148673267|gb|EDL05214.1| mCG54232 [Mus musculus]
gi|148678405|gb|EDL10352.1| mCG23377, isoform CRA_b [Mus musculus]
gi|149035463|gb|EDL90144.1| rCG50143 [Rattus norvegicus]
Length = 77
Score = 52.0 bits (123), Expect = 3e-04, Method: Composition-based stats.
Identities = 30/74 (40%), Positives = 44/74 (59%), Gaps = 3/74 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D K+ P QQ LI GK L+D TL+
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLS 57
Query: 61 DNKVSEDGFLVVML 74
D + ++ L ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|149044848|gb|EDL98034.1| rCG23287, isoform CRA_b [Rattus norvegicus]
gi|149044849|gb|EDL98035.1| rCG23287, isoform CRA_b [Rattus norvegicus]
Length = 145
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 34/95 (35%), Positives = 51/95 (53%), Gaps = 7/95 (7%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D K+ P QQ LI GK L+D TL+
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLS 57
Query: 61 DNKVSEDGFLVVMLSKSKTLGSAGASSAQPAHTTP 95
D + ++ L ++L L + ++TTP
Sbjct: 58 DYNIQKESTLHLVLR----LRGGAKKRKKKSYTTP 88
>gi|452819514|gb|EME26571.1| ubiquitin [Galdieria sulphuraria]
Length = 184
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 44/74 (59%), Gaps = 3/74 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D K+ P QQ LI GK L+D TL+
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKSKIQD---KEGIPPDQQRLIFAGKQLEDGRTLS 57
Query: 61 DNKVSEDGFLVVML 74
D + ++ L ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|432904346|ref|XP_004077285.1| PREDICTED: ubiquitin-40S ribosomal protein S27a-like [Oryzias
latipes]
Length = 209
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 34/95 (35%), Positives = 51/95 (53%), Gaps = 7/95 (7%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D K+ P QQ LI GK L+D TL+
Sbjct: 54 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLS 110
Query: 61 DNKVSEDGFLVVMLSKSKTLGSAGASSAQPAHTTP 95
D + ++ L ++L L + ++TTP
Sbjct: 111 DYNIQKESTLHLVLR----LRGGAKKRKKKSYTTP 141
>gi|402880024|ref|XP_003903615.1| PREDICTED: NEDD8-like isoform 1 [Papio anubis]
gi|402880026|ref|XP_003903616.1| PREDICTED: NEDD8-like isoform 2 [Papio anubis]
Length = 81
Score = 52.0 bits (123), Expect = 3e-04, Method: Composition-based stats.
Identities = 28/75 (37%), Positives = 45/75 (60%), Gaps = 3/75 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M + VKTL G EI ++P++ V +K+ +E+ K+ P QQ LI++GK + DE T A
Sbjct: 1 MLIKVKTLTGEEIEIDIEPTEKVEWIKERVEE---KEGIPPQQQRLIYSGKQMNDEKTAA 57
Query: 61 DNKVSEDGFLVVMLS 75
D K+ L ++L+
Sbjct: 58 DYKILSGSVLHLVLA 72
>gi|403264482|ref|XP_003924511.1| PREDICTED: ubiquitin-60S ribosomal protein L40-like isoform 1
[Saimiri boliviensis boliviensis]
gi|403264484|ref|XP_003924512.1| PREDICTED: ubiquitin-60S ribosomal protein L40-like isoform 2
[Saimiri boliviensis boliviensis]
Length = 128
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 45/74 (60%), Gaps = 3/74 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D +G P QQ LI GK L+D TL+
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKKG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 61 DNKVSEDGFLVVML 74
DN + ++ L ++L
Sbjct: 58 DNNIQKESTLHLVL 71
>gi|391348265|ref|XP_003748368.1| PREDICTED: LOW QUALITY PROTEIN: polyubiquitin-A-like [Metaseiulus
occidentalis]
Length = 913
Score = 52.0 bits (123), Expect = 3e-04, Method: Composition-based stats.
Identities = 30/74 (40%), Positives = 44/74 (59%), Gaps = 3/74 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D K+ P QQ LI GK L+D TL+
Sbjct: 229 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLS 285
Query: 61 DNKVSEDGFLVVML 74
D + ++ L ++L
Sbjct: 286 DYNIQKESTLHLVL 299
Score = 52.0 bits (123), Expect = 3e-04, Method: Composition-based stats.
Identities = 30/74 (40%), Positives = 44/74 (59%), Gaps = 3/74 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D K+ P QQ LI GK L+D TL+
Sbjct: 457 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLS 513
Query: 61 DNKVSEDGFLVVML 74
D + ++ L ++L
Sbjct: 514 DYNIQKESTLHLVL 527
Score = 52.0 bits (123), Expect = 3e-04, Method: Composition-based stats.
Identities = 30/74 (40%), Positives = 44/74 (59%), Gaps = 3/74 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D K+ P QQ LI GK L+D TL+
Sbjct: 533 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLS 589
Query: 61 DNKVSEDGFLVVML 74
D + ++ L ++L
Sbjct: 590 DYNIQKESTLHLVL 603
Score = 52.0 bits (123), Expect = 3e-04, Method: Composition-based stats.
Identities = 30/74 (40%), Positives = 44/74 (59%), Gaps = 3/74 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D K+ P QQ LI GK L+D TL+
Sbjct: 761 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLS 817
Query: 61 DNKVSEDGFLVVML 74
D + ++ L ++L
Sbjct: 818 DYNIQKESTLHLVL 831
Score = 52.0 bits (123), Expect = 3e-04, Method: Composition-based stats.
Identities = 30/74 (40%), Positives = 44/74 (59%), Gaps = 3/74 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D K+ P QQ LI GK L+D TL+
Sbjct: 609 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLS 665
Query: 61 DNKVSEDGFLVVML 74
D + ++ L ++L
Sbjct: 666 DYSIQKESTLHLVL 679
Score = 50.8 bits (120), Expect = 6e-04, Method: Composition-based stats.
Identities = 30/74 (40%), Positives = 43/74 (58%), Gaps = 3/74 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D K+ P QQ LI GK L+D TL
Sbjct: 381 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLL 437
Query: 61 DNKVSEDGFLVVML 74
D + ++ L ++L
Sbjct: 438 DYNIQKESTLHLVL 451
Score = 50.1 bits (118), Expect = 0.001, Method: Composition-based stats.
Identities = 29/74 (39%), Positives = 44/74 (59%), Gaps = 3/74 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D K+ P QQ LI GK L++ TL+
Sbjct: 305 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQD---KEGIPPDQQRLIFAGKQLEEGRTLS 361
Query: 61 DNKVSEDGFLVVML 74
D + ++ L ++L
Sbjct: 362 DYNIQKESTLHLVL 375
Score = 48.9 bits (115), Expect = 0.003, Method: Composition-based stats.
Identities = 29/74 (39%), Positives = 43/74 (58%), Gaps = 3/74 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+ SDT+ VK I+D +G P QQ LI GK L+D TL+
Sbjct: 837 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGX---PPDQQRLIFAGKQLEDGRTLS 893
Query: 61 DNKVSEDGFLVVML 74
D + ++ L ++L
Sbjct: 894 DYNIQKESTLHLVL 907
Score = 48.5 bits (114), Expect = 0.003, Method: Composition-based stats.
Identities = 29/74 (39%), Positives = 43/74 (58%), Gaps = 3/74 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+ SDT+ VK I+D K+ P QQ LI GK L+D TL+
Sbjct: 77 MQIFVKTLTGKTITLEVESSDTIENVKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLS 133
Query: 61 DNKVSEDGFLVVML 74
D + ++ L ++L
Sbjct: 134 DYNIQKESTLHLVL 147
Score = 48.5 bits (114), Expect = 0.003, Method: Composition-based stats.
Identities = 29/74 (39%), Positives = 43/74 (58%), Gaps = 3/74 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+ SDT+ VK I+D K+ P QQ LI GK L+D TL+
Sbjct: 685 MQIFVKTLTGKTITLEVEASDTIENVKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLS 741
Query: 61 DNKVSEDGFLVVML 74
D + ++ L ++L
Sbjct: 742 DYNIQKESTLHLVL 755
Score = 46.2 bits (108), Expect = 0.015, Method: Composition-based stats.
Identities = 28/74 (37%), Positives = 43/74 (58%), Gaps = 3/74 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+ SDT+ VK ++D K+ P QQ LI GK L+D TL+
Sbjct: 153 MQIFVKTLTGXTITLDVEASDTIENVKVKLQD---KEGIPPDQQRLIFAGKQLEDGRTLS 209
Query: 61 DNKVSEDGFLVVML 74
D + ++ L ++L
Sbjct: 210 DYNIQKESTLHLVL 223
Score = 45.8 bits (107), Expect = 0.017, Method: Composition-based stats.
Identities = 28/74 (37%), Positives = 43/74 (58%), Gaps = 3/74 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+ +DT+ VK I+D K+ P QQ LI GK L+D TL+
Sbjct: 1 MQIFVKTLTGKTITLDVELADTIENVKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLS 57
Query: 61 DNKVSEDGFLVVML 74
D + ++ L ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|13172895|gb|AAK14239.1|AF321441_1 polyubiquitin GmUblast [Galleria mellonella]
Length = 77
Score = 52.0 bits (123), Expect = 3e-04, Method: Composition-based stats.
Identities = 30/74 (40%), Positives = 44/74 (59%), Gaps = 3/74 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D K+ P QQ LI GK L+D TL+
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLS 57
Query: 61 DNKVSEDGFLVVML 74
D + ++ L ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|195190296|ref|XP_002029499.1| GL14086 [Drosophila persimilis]
gi|194103217|gb|EDW25260.1| GL14086 [Drosophila persimilis]
Length = 79
Score = 52.0 bits (123), Expect = 3e-04, Method: Composition-based stats.
Identities = 30/74 (40%), Positives = 44/74 (59%), Gaps = 3/74 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D K+ P QQ LI GK L+D TL+
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLS 57
Query: 61 DNKVSEDGFLVVML 74
D + ++ L ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|195337251|ref|XP_002035242.1| GM14032 [Drosophila sechellia]
gi|194128335|gb|EDW50378.1| GM14032 [Drosophila sechellia]
Length = 915
Score = 52.0 bits (123), Expect = 3e-04, Method: Composition-based stats.
Identities = 30/74 (40%), Positives = 44/74 (59%), Gaps = 3/74 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D K+ P QQ LI GK L+D TL+
Sbjct: 533 MQIFVKTLTGKTINLEVEPSDTIENVKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLS 589
Query: 61 DNKVSEDGFLVVML 74
D + ++ L ++L
Sbjct: 590 DYNIQKESTLHLVL 603
Score = 51.6 bits (122), Expect = 3e-04, Method: Composition-based stats.
Identities = 30/74 (40%), Positives = 44/74 (59%), Gaps = 3/74 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D K+ P QQ LI GK L+D TL+
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLS 57
Query: 61 DNKVSEDGFLVVML 74
D + ++ L ++L
Sbjct: 58 DYNIQKESTLHLVL 71
Score = 51.6 bits (122), Expect = 3e-04, Method: Composition-based stats.
Identities = 30/74 (40%), Positives = 44/74 (59%), Gaps = 3/74 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D K+ P QQ LI GK L+D TL+
Sbjct: 77 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLS 133
Query: 61 DNKVSEDGFLVVML 74
D + ++ L ++L
Sbjct: 134 DYNIQKESTLHLVL 147
Score = 51.6 bits (122), Expect = 3e-04, Method: Composition-based stats.
Identities = 30/74 (40%), Positives = 44/74 (59%), Gaps = 3/74 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D K+ P QQ LI GK L+D TL+
Sbjct: 153 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLS 209
Query: 61 DNKVSEDGFLVVML 74
D + ++ L ++L
Sbjct: 210 DYNIQKESTLHLVL 223
Score = 51.6 bits (122), Expect = 3e-04, Method: Composition-based stats.
Identities = 30/74 (40%), Positives = 44/74 (59%), Gaps = 3/74 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D K+ P QQ LI GK L+D TL+
Sbjct: 229 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLS 285
Query: 61 DNKVSEDGFLVVML 74
D + ++ L ++L
Sbjct: 286 DYNIQKESTLHLVL 299
Score = 51.6 bits (122), Expect = 3e-04, Method: Composition-based stats.
Identities = 30/74 (40%), Positives = 44/74 (59%), Gaps = 3/74 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D K+ P QQ LI GK L+D TL+
Sbjct: 305 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLS 361
Query: 61 DNKVSEDGFLVVML 74
D + ++ L ++L
Sbjct: 362 DYNIQKESTLHLVL 375
Score = 51.6 bits (122), Expect = 3e-04, Method: Composition-based stats.
Identities = 30/74 (40%), Positives = 44/74 (59%), Gaps = 3/74 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D K+ P QQ LI GK L+D TL+
Sbjct: 381 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLS 437
Query: 61 DNKVSEDGFLVVML 74
D + ++ L ++L
Sbjct: 438 DYNIQKESTLHLVL 451
Score = 51.6 bits (122), Expect = 3e-04, Method: Composition-based stats.
Identities = 30/74 (40%), Positives = 44/74 (59%), Gaps = 3/74 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D K+ P QQ LI GK L+D TL+
Sbjct: 457 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLS 513
Query: 61 DNKVSEDGFLVVML 74
D + ++ L ++L
Sbjct: 514 DYNIQKESTLHLVL 527
Score = 51.6 bits (122), Expect = 3e-04, Method: Composition-based stats.
Identities = 30/74 (40%), Positives = 44/74 (59%), Gaps = 3/74 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D K+ P QQ LI GK L+D TL+
Sbjct: 609 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLS 665
Query: 61 DNKVSEDGFLVVML 74
D + ++ L ++L
Sbjct: 666 DYNIQKESTLHLVL 679
Score = 51.6 bits (122), Expect = 3e-04, Method: Composition-based stats.
Identities = 30/74 (40%), Positives = 44/74 (59%), Gaps = 3/74 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D K+ P QQ LI GK L+D TL+
Sbjct: 685 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLS 741
Query: 61 DNKVSEDGFLVVML 74
D + ++ L ++L
Sbjct: 742 DYNIQKESTLHLVL 755
Score = 51.6 bits (122), Expect = 3e-04, Method: Composition-based stats.
Identities = 30/74 (40%), Positives = 44/74 (59%), Gaps = 3/74 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D K+ P QQ LI GK L+D TL+
Sbjct: 837 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLS 893
Query: 61 DNKVSEDGFLVVML 74
D + ++ L ++L
Sbjct: 894 DYNIQKESTLHLVL 907
Score = 48.1 bits (113), Expect = 0.003, Method: Composition-based stats.
Identities = 29/74 (39%), Positives = 43/74 (58%), Gaps = 3/74 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D K+ QQ LI GK L+D TL+
Sbjct: 761 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQD---KEGISPDQQRLIFAGKQLEDGRTLS 817
Query: 61 DNKVSEDGFLVVML 74
D + ++ L ++L
Sbjct: 818 DYNIQKESTLHLVL 831
>gi|229532|prf||751846A ubiquitin
gi|446405|prf||1911411A ubiquitin
gi|1092926|prf||2102234A ubiquitin
gi|1095375|prf||2108379A ubiquitin
Length = 74
Score = 52.0 bits (123), Expect = 3e-04, Method: Composition-based stats.
Identities = 30/74 (40%), Positives = 44/74 (59%), Gaps = 3/74 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D K+ P QQ LI GK L+D TL+
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLS 57
Query: 61 DNKVSEDGFLVVML 74
D + ++ L ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|390136137|pdb|3RUL|A Chain A, New Strategy To Analyze Structures Of
Glycopeptide-Target Complexes
gi|390136138|pdb|3RUL|B Chain B, New Strategy To Analyze Structures Of
Glycopeptide-Target Complexes
gi|390136139|pdb|3RUL|C Chain C, New Strategy To Analyze Structures Of
Glycopeptide-Target Complexes
gi|390136140|pdb|3RUL|D Chain D, New Strategy To Analyze Structures Of
Glycopeptide-Target Complexes
gi|440690581|pdb|3VFK|A Chain A, The Structure Of Monodechloro-Teicoplanin In Complex
With Its Ligand, Using Ubiquitin As A Ligand Carrier
Length = 79
Score = 52.0 bits (123), Expect = 3e-04, Method: Composition-based stats.
Identities = 30/74 (40%), Positives = 44/74 (59%), Gaps = 3/74 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D K+ P QQ LI GK L+D TL+
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLS 57
Query: 61 DNKVSEDGFLVVML 74
D + ++ L ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|342906196|gb|AEL79381.1| ubiquitin [Rhodnius prolixus]
Length = 81
Score = 52.0 bits (123), Expect = 3e-04, Method: Composition-based stats.
Identities = 30/74 (40%), Positives = 44/74 (59%), Gaps = 3/74 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D K+ P QQ LI GK L+D TL+
Sbjct: 5 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLS 61
Query: 61 DNKVSEDGFLVVML 74
D + ++ L ++L
Sbjct: 62 DYNIQKESTLHLVL 75
>gi|62089150|dbj|BAD93019.1| ubiquitin C variant [Homo sapiens]
Length = 1309
Score = 52.0 bits (123), Expect = 3e-04, Method: Composition-based stats.
Identities = 30/74 (40%), Positives = 44/74 (59%), Gaps = 3/74 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D K+ P QQ LI GK L+D TL+
Sbjct: 17 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLS 73
Query: 61 DNKVSEDGFLVVML 74
D + ++ L ++L
Sbjct: 74 DYNIQKESTLHLVL 87
Score = 52.0 bits (123), Expect = 3e-04, Method: Composition-based stats.
Identities = 30/74 (40%), Positives = 44/74 (59%), Gaps = 3/74 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D K+ P QQ LI GK L+D TL+
Sbjct: 93 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLS 149
Query: 61 DNKVSEDGFLVVML 74
D + ++ L ++L
Sbjct: 150 DYNIQKESTLHLVL 163
Score = 52.0 bits (123), Expect = 3e-04, Method: Composition-based stats.
Identities = 30/74 (40%), Positives = 44/74 (59%), Gaps = 3/74 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D K+ P QQ LI GK L+D TL+
Sbjct: 169 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLS 225
Query: 61 DNKVSEDGFLVVML 74
D + ++ L ++L
Sbjct: 226 DYNIQKESTLHLVL 239
Score = 52.0 bits (123), Expect = 3e-04, Method: Composition-based stats.
Identities = 30/74 (40%), Positives = 44/74 (59%), Gaps = 3/74 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D K+ P QQ LI GK L+D TL+
Sbjct: 245 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLS 301
Query: 61 DNKVSEDGFLVVML 74
D + ++ L ++L
Sbjct: 302 DYNIQKESTLHLVL 315
Score = 52.0 bits (123), Expect = 3e-04, Method: Composition-based stats.
Identities = 30/74 (40%), Positives = 44/74 (59%), Gaps = 3/74 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D K+ P QQ LI GK L+D TL+
Sbjct: 321 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLS 377
Query: 61 DNKVSEDGFLVVML 74
D + ++ L ++L
Sbjct: 378 DYNIQKESTLHLVL 391
Score = 52.0 bits (123), Expect = 3e-04, Method: Composition-based stats.
Identities = 30/74 (40%), Positives = 44/74 (59%), Gaps = 3/74 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D K+ P QQ LI GK L+D TL+
Sbjct: 397 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLS 453
Query: 61 DNKVSEDGFLVVML 74
D + ++ L ++L
Sbjct: 454 DYNIQKESTLHLVL 467
Score = 52.0 bits (123), Expect = 3e-04, Method: Composition-based stats.
Identities = 30/74 (40%), Positives = 44/74 (59%), Gaps = 3/74 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D K+ P QQ LI GK L+D TL+
Sbjct: 473 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLS 529
Query: 61 DNKVSEDGFLVVML 74
D + ++ L ++L
Sbjct: 530 DYNIQKESTLHLVL 543
Score = 52.0 bits (123), Expect = 3e-04, Method: Composition-based stats.
Identities = 30/74 (40%), Positives = 44/74 (59%), Gaps = 3/74 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D K+ P QQ LI GK L+D TL+
Sbjct: 549 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLS 605
Query: 61 DNKVSEDGFLVVML 74
D + ++ L ++L
Sbjct: 606 DYNIQKESTLHLVL 619
Score = 52.0 bits (123), Expect = 3e-04, Method: Composition-based stats.
Identities = 30/74 (40%), Positives = 44/74 (59%), Gaps = 3/74 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D K+ P QQ LI GK L+D TL+
Sbjct: 625 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLS 681
Query: 61 DNKVSEDGFLVVML 74
D + ++ L ++L
Sbjct: 682 DYNIQKESTLHLVL 695
Score = 52.0 bits (123), Expect = 3e-04, Method: Composition-based stats.
Identities = 30/74 (40%), Positives = 44/74 (59%), Gaps = 3/74 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D K+ P QQ LI GK L+D TL+
Sbjct: 701 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLS 757
Query: 61 DNKVSEDGFLVVML 74
D + ++ L ++L
Sbjct: 758 DYNIQKESTLHLVL 771
Score = 52.0 bits (123), Expect = 3e-04, Method: Composition-based stats.
Identities = 30/74 (40%), Positives = 44/74 (59%), Gaps = 3/74 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D K+ P QQ LI GK L+D TL+
Sbjct: 777 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLS 833
Query: 61 DNKVSEDGFLVVML 74
D + ++ L ++L
Sbjct: 834 DYNIQKESTLHLVL 847
Score = 52.0 bits (123), Expect = 3e-04, Method: Composition-based stats.
Identities = 30/74 (40%), Positives = 44/74 (59%), Gaps = 3/74 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D K+ P QQ LI GK L+D TL+
Sbjct: 853 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLS 909
Query: 61 DNKVSEDGFLVVML 74
D + ++ L ++L
Sbjct: 910 DYNIQKESTLHLVL 923
Score = 52.0 bits (123), Expect = 3e-04, Method: Composition-based stats.
Identities = 30/74 (40%), Positives = 44/74 (59%), Gaps = 3/74 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D K+ P QQ LI GK L+D TL+
Sbjct: 929 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLS 985
Query: 61 DNKVSEDGFLVVML 74
D + ++ L ++L
Sbjct: 986 DYNIQKESTLHLVL 999
Score = 52.0 bits (123), Expect = 3e-04, Method: Composition-based stats.
Identities = 30/74 (40%), Positives = 44/74 (59%), Gaps = 3/74 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D K+ P QQ LI GK L+D TL+
Sbjct: 1005 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLS 1061
Query: 61 DNKVSEDGFLVVML 74
D + ++ L ++L
Sbjct: 1062 DYNIQKESTLHLVL 1075
Score = 52.0 bits (123), Expect = 3e-04, Method: Composition-based stats.
Identities = 30/74 (40%), Positives = 44/74 (59%), Gaps = 3/74 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D K+ P QQ LI GK L+D TL+
Sbjct: 1081 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLS 1137
Query: 61 DNKVSEDGFLVVML 74
D + ++ L ++L
Sbjct: 1138 DYNIQKESTLHLVL 1151
Score = 52.0 bits (123), Expect = 3e-04, Method: Composition-based stats.
Identities = 30/74 (40%), Positives = 44/74 (59%), Gaps = 3/74 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D K+ P QQ LI GK L+D TL+
Sbjct: 1157 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLS 1213
Query: 61 DNKVSEDGFLVVML 74
D + ++ L ++L
Sbjct: 1214 DYNIQKESTLHLVL 1227
Score = 50.1 bits (118), Expect = 0.001, Method: Composition-based stats.
Identities = 29/74 (39%), Positives = 44/74 (59%), Gaps = 3/74 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D K+ P QQ LI GK L++ TL+
Sbjct: 1233 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQD---KEGIPPDQQRLIFAGKQLENGRTLS 1289
Query: 61 DNKVSEDGFLVVML 74
D + ++ L ++L
Sbjct: 1290 DYNIQKESTLHLVL 1303
>gi|429962085|gb|ELA41629.1| ubiquitin-40S ribosomal protein S27a [Vittaforma corneae ATCC
50505]
Length = 90
Score = 52.0 bits (123), Expect = 3e-04, Method: Composition-based stats.
Identities = 29/74 (39%), Positives = 45/74 (60%), Gaps = 3/74 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ ++K I+D K+ P QQ LI GK L+D TL+
Sbjct: 1 MQIFVKTLTGKVITLEVEPSDTIDSIKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLS 57
Query: 61 DNKVSEDGFLVVML 74
D + ++ L ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|1421797|gb|AAB03872.1| polyubiquitin, partial [Manduca sexta]
Length = 79
Score = 52.0 bits (123), Expect = 3e-04, Method: Composition-based stats.
Identities = 30/74 (40%), Positives = 44/74 (59%), Gaps = 3/74 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D K+ P QQ LI GK L+D TL+
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLS 57
Query: 61 DNKVSEDGFLVVML 74
D + ++ L ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|410928754|ref|XP_003977765.1| PREDICTED: NEDD8-like [Takifugu rubripes]
Length = 96
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 44/73 (60%), Gaps = 3/73 (4%)
Query: 3 LTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADN 62
+ VKTL G EI ++P+D V +K+ +E+ K+ P QQ LI++GK + DE T AD
Sbjct: 9 VKVKTLTGKEIEIDIEPTDKVERIKERVEE---KEGIPPQQQRLIYSGKQMNDEKTAADY 65
Query: 63 KVSEDGFLVVMLS 75
K+ L ++L+
Sbjct: 66 KIQGGSVLHLVLA 78
>gi|357529042|gb|AET80727.1| polyubiquitin [Pinctada fucata]
Length = 77
Score = 52.0 bits (123), Expect = 3e-04, Method: Composition-based stats.
Identities = 30/74 (40%), Positives = 44/74 (59%), Gaps = 3/74 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D K+ P QQ LI GK L+D TL+
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLS 57
Query: 61 DNKVSEDGFLVVML 74
D + ++ L ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|5523975|gb|AAD44040.1|AF104023_1 polyprotein [Bovine viral diarrhea virus 2]
Length = 309
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 44/75 (58%), Gaps = 3/75 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D K+ P QQ LI GK L+D TL+
Sbjct: 177 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLS 233
Query: 61 DNKVSEDGFLVVMLS 75
D + ++ L ++L
Sbjct: 234 DYNIQKESTLHLVLR 248
>gi|302595808|sp|P0CH27.1|RL402_TRYCR RecName: Full=Ubiquitin-60S ribosomal protein L40; Contains:
RecName: Full=Ubiquitin; Contains: RecName: Full=60S
ribosomal protein L40; Flags: Precursor
gi|162337|gb|AAA30271.1| ubiquitin precursor [Trypanosoma cruzi]
Length = 356
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 54/207 (26%), Positives = 82/207 (39%), Gaps = 32/207 (15%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+ SDT+ VK I+D K+ P QQ LI GK L+D TLA
Sbjct: 153 MQIFVKTLTGKTIALEVESSDTIENVKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLA 209
Query: 61 DNKVSEDGFLVVMLSKS-------KTL-GSAGASSAQPAHTTPPTTAPSSNSTPPQEASV 112
D + ++ L ++L KTL G A + + T A + + +
Sbjct: 210 DYNIQKESTLHLVLRLRGGMQIFVKTLTGKTIALEVESSDTIENVKAKIQD-----KEGI 264
Query: 113 PPPAPTPSIPASNVTSNVTAANANSDTYGQAASNLVAGNDLEQTIQQIMDMGGGTWDKET 172
PP + T A+ N E T+ ++ + GG E
Sbjct: 265 PPDQQRLIFAGKQLEDGRTLADYNIQK--------------ESTLHLVLRLRGGVM--EP 308
Query: 173 VTRALQAAYNNPERAVDYLYSGIPETA 199
AL YN ++ Y+ +P A
Sbjct: 309 TLEALAKKYNWEKKVCRRCYARLPVRA 335
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 43/75 (57%), Gaps = 3/75 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+ SDT+ VK I+D K+ P QQ LI GK L+D TLA
Sbjct: 1 MQIFVKTLTGKTIALEVESSDTIENVKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLA 57
Query: 61 DNKVSEDGFLVVMLS 75
D + ++ L ++L
Sbjct: 58 DYNIQKESTLHLVLR 72
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 43/75 (57%), Gaps = 3/75 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+ SDT+ VK I+D K+ P QQ LI GK L+D TLA
Sbjct: 77 MQIFVKTLTGKTIALEVESSDTIENVKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLA 133
Query: 61 DNKVSEDGFLVVMLS 75
D + ++ L ++L
Sbjct: 134 DYNIQKESTLHLVLR 148
>gi|335292563|ref|XP_003356757.1| PREDICTED: NEDD8-like [Sus scrofa]
Length = 81
Score = 52.0 bits (123), Expect = 3e-04, Method: Composition-based stats.
Identities = 27/75 (36%), Positives = 45/75 (60%), Gaps = 3/75 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M + ++TL G EI ++P+D V +K+ +E+ K+ P QQ LI++GK + DE T A
Sbjct: 1 MLILIQTLTGKEIEIDIEPTDKVERIKERVEE---KEGIPPQQQRLIYSGKQMNDEKTAA 57
Query: 61 DNKVSEDGFLVVMLS 75
D K+ L ++L+
Sbjct: 58 DYKILGGSVLHLVLA 72
>gi|347964389|ref|XP_311268.5| AGAP000733-PA [Anopheles gambiae str. PEST]
gi|333467508|gb|EAA06820.6| AGAP000733-PA [Anopheles gambiae str. PEST]
Length = 390
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 45/77 (58%), Gaps = 2/77 (2%)
Query: 1 MKLTVKTLKGSHFEIRVQ-PSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTL 59
MK+T+KTLK F + V DTV +K+ + G YP +Q LI+ GK+++D+ L
Sbjct: 1 MKITLKTLKQQTFFVEVDVEQDTVRTLKEKLHAESGL-AYPVDRQRLIYLGKIMEDDHLL 59
Query: 60 ADNKVSEDGFLVVMLSK 76
+ K+ + F+VVM K
Sbjct: 60 SQYKLDDKKFIVVMSKK 76
>gi|193664755|ref|XP_001945024.1| PREDICTED: NEDD8-like [Acyrthosiphon pisum]
Length = 81
Score = 52.0 bits (123), Expect = 3e-04, Method: Composition-based stats.
Identities = 29/75 (38%), Positives = 43/75 (57%), Gaps = 3/75 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M + VKTL G EI ++P+D V +K+ +E+ K+ P QQ LI +GK + DE T
Sbjct: 1 MLIKVKTLTGKEIEIDIEPTDRVERIKERVEE---KEGIPPQQQRLIFSGKQMNDEKTAQ 57
Query: 61 DNKVSEDGFLVVMLS 75
D KV L ++L+
Sbjct: 58 DYKVQGGSVLHLVLA 72
>gi|5523977|gb|AAD44041.1|AF104024_1 polyprotein [Bovine viral diarrhea virus 2]
Length = 365
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 44/75 (58%), Gaps = 3/75 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D K+ P QQ LI GK L+D TL+
Sbjct: 233 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLS 289
Query: 61 DNKVSEDGFLVVMLS 75
D + ++ L ++L
Sbjct: 290 DYNIQKESTLHLVLR 304
>gi|334323113|ref|XP_003340346.1| PREDICTED: ubiquitin-60S ribosomal protein L40-like [Monodelphis
domestica]
Length = 77
Score = 51.6 bits (122), Expect = 3e-04, Method: Composition-based stats.
Identities = 30/74 (40%), Positives = 44/74 (59%), Gaps = 3/74 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D K+ P QQ LI GK L+D TL+
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLS 57
Query: 61 DNKVSEDGFLVVML 74
D + ++ L ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|208562|gb|AAA72698.1| synthetic ubiquitin [synthetic construct]
Length = 76
Score = 51.6 bits (122), Expect = 3e-04, Method: Composition-based stats.
Identities = 30/74 (40%), Positives = 44/74 (59%), Gaps = 3/74 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D K+ P QQ LI GK L+D TL+
Sbjct: 1 MQICVKTLTGKTICLEVEPSDTIENVKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLS 57
Query: 61 DNKVSEDGFLVVML 74
D + ++ L ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|297667617|ref|XP_002812070.1| PREDICTED: ubiquitin-40S ribosomal protein S27a [Pongo abelii]
Length = 156
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 35/95 (36%), Positives = 52/95 (54%), Gaps = 7/95 (7%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL+G RV+PSDT+ VK I+D +G P QQ LI GK L+D TL+
Sbjct: 1 MQIFVKTLRGRPSPSRVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 61 DNKVSEDGFLVVMLSKSKTLGSAGASSAQPAHTTP 95
D + ++ L ++L L + ++TTP
Sbjct: 58 DYNIQKESTLHLVLR----LRGGAKKRKKKSYTTP 88
>gi|194879922|ref|XP_001974329.1| GG21672 [Drosophila erecta]
gi|195484285|ref|XP_002090629.1| GE12693 [Drosophila yakuba]
gi|190657516|gb|EDV54729.1| GG21672 [Drosophila erecta]
gi|194176730|gb|EDW90341.1| GE12693 [Drosophila yakuba]
Length = 84
Score = 51.6 bits (122), Expect = 3e-04, Method: Composition-based stats.
Identities = 29/75 (38%), Positives = 44/75 (58%), Gaps = 3/75 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M + VKTL G EI ++P+D V +K+ +E+ K+ P QQ LI +GK + D+ T A
Sbjct: 1 MLIKVKTLTGKEIEIDIEPTDKVDRIKERVEE---KEGIPPQQQRLIFSGKQMNDDKTAA 57
Query: 61 DNKVSEDGFLVVMLS 75
D KV L ++L+
Sbjct: 58 DYKVQGGSVLHLVLA 72
>gi|56967061|pdb|1XD3|B Chain B, Crystal Structure Of Uchl3-Ubvme Complex
gi|56967063|pdb|1XD3|D Chain D, Crystal Structure Of Uchl3-Ubvme Complex
gi|118138326|pdb|2IBI|B Chain B, Covalent Ubiquitin-Usp2 Complex
gi|145579739|pdb|2J7Q|B Chain B, Crystal Structure Of The Ubiquitin-Specific Protease
Encoded By Murine Cytomegalovirus Tegument Protein M48
In Complex With A Ubquitin-Based Suicide Substrate
gi|145579741|pdb|2J7Q|D Chain D, Crystal Structure Of The Ubiquitin-Specific Protease
Encoded By Murine Cytomegalovirus Tegument Protein M48
In Complex With A Ubquitin-Based Suicide Substrate
gi|168177298|pdb|3C0R|B Chain B, Structure Of Ovarian Tumor (Otu) Domain In Complex With
Ubiquitin
gi|168177300|pdb|3C0R|D Chain D, Structure Of Ovarian Tumor (Otu) Domain In Complex With
Ubiquitin
gi|169404784|pdb|3BY4|B Chain B, Structure Of Ovarian Tumor (Otu) Domain In Complex With
Ubiquitin
gi|254575051|pdb|3I3T|B Chain B, Crystal Structure Of Covalent Ubiquitin-usp21 Complex
gi|254575052|pdb|3I3T|D Chain D, Crystal Structure Of Covalent Ubiquitin-usp21 Complex
gi|254575053|pdb|3I3T|F Chain F, Crystal Structure Of Covalent Ubiquitin-usp21 Complex
gi|254575054|pdb|3I3T|H Chain H, Crystal Structure Of Covalent Ubiquitin-usp21 Complex
gi|282403707|pdb|3IHP|C Chain C, Covalent Ubiquitin-Usp5 Complex
gi|282403708|pdb|3IHP|D Chain D, Covalent Ubiquitin-Usp5 Complex
gi|298508352|pdb|3IFW|B Chain B, Crystal Structure Of The S18y Variant Of Ubiquitin
Carboxy T Hydrolase L1 Bound To Ubiquitin
Vinylmethylester.
gi|298508416|pdb|3KVF|B Chain B, Crystal Structure Of The I93m Mutant Of Ubiquitin
Carboxy Te Hydrolase L1 Bound To Ubiquitin
Vinylmethylester
gi|298508418|pdb|3KW5|B Chain B, Crystal Structure Of Ubiquitin Carboxy Terminal
Hydrolase L1 Ubiquitin Vinylmethylester
gi|319443769|pdb|3PT2|B Chain B, Structure Of A Viral Otu Domain Protease Bound To
Ubiquitin
gi|320089917|pdb|3PRM|B Chain B, Structural Analysis Of A Viral Otu Domain Protease From
The Crimean- Congo Hemorrhagic Fever Virus In Complex
With Human Ubiquitin
gi|320089919|pdb|3PRM|D Chain D, Structural Analysis Of A Viral Otu Domain Protease From
The Crimean- Congo Hemorrhagic Fever Virus In Complex
With Human Ubiquitin
gi|320089921|pdb|3PRP|B Chain B, Structural Analysis Of A Viral Otu Domain Protease From
The Crimean- Congo Hemorrhagic Fever Virus In Complex
With Human Ubiquitin
gi|320089923|pdb|3PRP|D Chain D, Structural Analysis Of A Viral Otu Domain Protease From
The Crimean- Congo Hemorrhagic Fever Virus In Complex
With Human Ubiquitin
gi|321159972|pdb|3PHW|B Chain B, Otu Domain Of Crimean Congo Hemorrhagic Fever Virus In
Complex With Ubiquitin
gi|321159974|pdb|3PHW|D Chain D, Otu Domain Of Crimean Congo Hemorrhagic Fever Virus In
Complex With Ubiquitin
gi|321159976|pdb|3PHW|F Chain F, Otu Domain Of Crimean Congo Hemorrhagic Fever Virus In
Complex With Ubiquitin
gi|321159978|pdb|3PHW|H Chain H, Otu Domain Of Crimean Congo Hemorrhagic Fever Virus In
Complex With Ubiquitin
gi|449802658|pdb|4HXD|A Chain A, Diversity Of Ubiquitin And Isg15 Specificity Amongst
Nairoviruses Viral Ovarian Tumor Domain Proteases
gi|449802660|pdb|4HXD|C Chain C, Diversity Of Ubiquitin And Isg15 Specificity Amongst
Nairoviruses Viral Ovarian Tumor Domain Proteases
Length = 75
Score = 51.6 bits (122), Expect = 3e-04, Method: Composition-based stats.
Identities = 30/74 (40%), Positives = 44/74 (59%), Gaps = 3/74 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D K+ P QQ LI GK L+D TL+
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLS 57
Query: 61 DNKVSEDGFLVVML 74
D + ++ L ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|5822011|pdb|1CMX|B Chain B, Structural Basis For The Specificity Of Ubiquitin C-
Terminal Hydrolases
gi|5822013|pdb|1CMX|D Chain D, Structural Basis For The Specificity Of Ubiquitin C-
Terminal Hydrolases
gi|28373984|pdb|1NBF|C Chain C, Crystal Structure Of A Ubp-Family Deubiquitinating
Enzyme In Isolation And In Complex With Ubiquitin
Aldehyde
gi|28373985|pdb|1NBF|D Chain D, Crystal Structure Of A Ubp-Family Deubiquitinating
Enzyme In Isolation And In Complex With Ubiquitin
Aldehyde
gi|82407937|pdb|2AYO|B Chain B, Structure Of Usp14 Bound To Ubquitin Aldehyde
gi|282403539|pdb|2WDT|B Chain B, Crystal Structure Of Plasmodium Falciparum Uchl3 In
Complex With The Suicide Inhibitor Ubvme
gi|282403540|pdb|2WDT|D Chain D, Crystal Structure Of Plasmodium Falciparum Uchl3 In
Complex With The Suicide Inhibitor Ubvme
gi|294979880|pdb|3MHS|D Chain D, Structure Of The Saga Ubp8SGF11SUS1SGF73 DUB MODULE
BOUND Ubiquitin Aldehyde
gi|312597454|pdb|3O65|B Chain B, Crystal Structure Of A Josephin-Ubiquitin Complex:
Evolutionary Restraints On Ataxin-3 Deubiquitinating
Activity
gi|312597456|pdb|3O65|D Chain D, Crystal Structure Of A Josephin-Ubiquitin Complex:
Evolutionary Restraints On Ataxin-3 Deubiquitinating
Activity
gi|312597458|pdb|3O65|F Chain F, Crystal Structure Of A Josephin-Ubiquitin Complex:
Evolutionary Restraints On Ataxin-3 Deubiquitinating
Activity
gi|312597460|pdb|3O65|H Chain H, Crystal Structure Of A Josephin-Ubiquitin Complex:
Evolutionary Restraints On Ataxin-3 Deubiquitinating
Activity
gi|371927588|pdb|3TMP|B Chain B, The Catalytic Domain Of Human Deubiquitinase Duba In
Complex With Ubiquitin Aldehyde
gi|371927590|pdb|3TMP|D Chain D, The Catalytic Domain Of Human Deubiquitinase Duba In
Complex With Ubiquitin Aldehyde
gi|371927592|pdb|3TMP|F Chain F, The Catalytic Domain Of Human Deubiquitinase Duba In
Complex With Ubiquitin Aldehyde
gi|371927594|pdb|3TMP|H Chain H, The Catalytic Domain Of Human Deubiquitinase Duba In
Complex With Ubiquitin Aldehyde
gi|377656640|pdb|4DHJ|B Chain B, The Structure Of A Ceotub1 Ubiquitin Aldehyde Ubc13~ub
Complex
gi|377656642|pdb|4DHJ|F Chain F, The Structure Of A Ceotub1 Ubiquitin Aldehyde Ubc13~ub
Complex
gi|377656646|pdb|4DHJ|J Chain J, The Structure Of A Ceotub1 Ubiquitin Aldehyde Ubc13~ub
Complex
gi|377656650|pdb|4DHJ|M Chain M, The Structure Of A Ceotub1 Ubiquitin Aldehyde Ubc13~ub
Complex
gi|377656654|pdb|4DHZ|B Chain B, The Structure Of HCEOTUB1-Ubiquitin Aldehyde-Ubc13~ub
gi|449802757|pdb|4IUM|B Chain B, Equine Arteritis Virus Papain-like Protease 2 (plp2)
Covalently Bound To Ubiquitin
gi|453055626|pdb|3ZNH|B Chain B, Crimean Congo Hemorrhagic Fever Virus Otu Domain In
Complex With Ubiquitin-propargyl
Length = 76
Score = 51.6 bits (122), Expect = 3e-04, Method: Composition-based stats.
Identities = 30/74 (40%), Positives = 44/74 (59%), Gaps = 3/74 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D K+ P QQ LI GK L+D TL+
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLS 57
Query: 61 DNKVSEDGFLVVML 74
D + ++ L ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|317574787|ref|NP_001187300.1| neural precursor cell expressed, developmentally down-regulated 8
[Ictalurus punctatus]
gi|308322657|gb|ADO28466.1| nedd8 [Ictalurus punctatus]
Length = 89
Score = 51.6 bits (122), Expect = 3e-04, Method: Composition-based stats.
Identities = 27/64 (42%), Positives = 40/64 (62%), Gaps = 3/64 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M + VKTL G EI ++P+D V +K+ +E+ K+ P QQ LI++GK + DE T A
Sbjct: 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEE---KEGIPPQQQRLIYSGKQMNDEKTAA 57
Query: 61 DNKV 64
D K+
Sbjct: 58 DYKI 61
>gi|156541904|ref|XP_001599314.1| PREDICTED: NEDD8-like [Nasonia vitripennis]
gi|383864001|ref|XP_003707468.1| PREDICTED: NEDD8-like [Megachile rotundata]
Length = 77
Score = 51.6 bits (122), Expect = 3e-04, Method: Composition-based stats.
Identities = 29/75 (38%), Positives = 43/75 (57%), Gaps = 3/75 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M + VKTL G EI ++P+D V +K+ +E+ K+ P QQ LI +GK + DE T
Sbjct: 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEE---KEGIPPQQQRLIFSGKQMNDEKTAQ 57
Query: 61 DNKVSEDGFLVVMLS 75
D KV L ++L+
Sbjct: 58 DYKVQGGSVLHLVLA 72
>gi|357611658|gb|EHJ67595.1| putative NEDD8 precursor [Danaus plexippus]
Length = 81
Score = 51.6 bits (122), Expect = 3e-04, Method: Composition-based stats.
Identities = 29/75 (38%), Positives = 43/75 (57%), Gaps = 3/75 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M + VKTL G EI ++P+D V +K+ +E+ K+ P QQ LI +GK + DE T
Sbjct: 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEE---KEGIPPQQQRLIFSGKQMNDEKTAQ 57
Query: 61 DNKVSEDGFLVVMLS 75
D KV L ++L+
Sbjct: 58 DYKVQGGSVLHLVLA 72
>gi|164510086|emb|CAJ32647.1| ubiquitin [Chorocaris chacei]
Length = 76
Score = 51.6 bits (122), Expect = 3e-04, Method: Composition-based stats.
Identities = 31/75 (41%), Positives = 45/75 (60%), Gaps = 3/75 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D K+ P QQ LI GK L+D TL+
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQD---KEGIPPDQQSLIFAGKQLEDGRTLS 57
Query: 61 DNKVSEDGFLVVMLS 75
D + ++ L ++LS
Sbjct: 58 DYNIQKESTLHLVLS 72
>gi|148698174|gb|EDL30121.1| mCG16273 [Mus musculus]
Length = 118
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 36/95 (37%), Positives = 52/95 (54%), Gaps = 7/95 (7%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK +D +G P QQ LI GK L+D TL+
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKTQDKEG---LPPDQQRLIFAGKQLEDGRTLS 57
Query: 61 DNKVSEDGFLVVMLSKSKTLGSAGASSAQPAHTTP 95
D + + L ++LS LG A + ++TTP
Sbjct: 58 DYNIQRESTLHLVLS---LLGGA-KKRKKKSYTTP 88
>gi|290999563|ref|XP_002682349.1| rad23 protein [Naegleria gruberi]
gi|284095976|gb|EFC49605.1| rad23 protein [Naegleria gruberi]
Length = 385
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 50/200 (25%), Positives = 96/200 (48%), Gaps = 10/200 (5%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++T KT+ F + P+DT+ +K+++ED Y LI+ GK L DE ++
Sbjct: 1 MQITFKTVLKRQFTLEANPTDTIKVLKQSVEDA---TEYSSNGMKLIYGGKELADEQSIE 57
Query: 61 DNKVSEDGFLVVMLSKSKTLGSAGASSAQPAHTTPPTTAPSSNSTPPQEASVPPPAPTPS 120
+ + V++++K K L + + P TT S+ + P + P+ T
Sbjct: 58 SANI-QSNVAVIVVAKKKQLAAQVKKKEEETTPQPTTTEQPSSESTPATTTTTTPSTTTP 116
Query: 121 IPASNVTSNVTAANANSDTYGQAASNLVAG---NDLEQTIQQIMDMGGGTWDKETVTRAL 177
+ + T + T A + T N+ G + ++T+QQ ++MG +D+ + +
Sbjct: 117 VTTTTTTPSTTPTTATTTTTTTEQQNIPGGPGSPEYDETVQQFLEMG---YDRNDIDECM 173
Query: 178 QAAYNNPERAVDYLYSGIPE 197
+A++ + A ++L SGIPE
Sbjct: 174 KASFYDRATAAEFLISGIPE 193
>gi|145498050|ref|XP_001435013.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124402142|emb|CAK67616.1| unnamed protein product [Paramecium tetraurelia]
Length = 153
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 46/75 (61%), Gaps = 3/75 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + + V+PSDT+ AVK I+D K+ P QQ LI GK L+D TL+
Sbjct: 77 MQIFVKTLTGKNITLDVEPSDTIDAVKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLS 133
Query: 61 DNKVSEDGFLVVMLS 75
D + ++ L ++L
Sbjct: 134 DYNIQKESTLHLVLR 148
Score = 50.8 bits (120), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 45/75 (60%), Gaps = 3/75 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ AVK I+D K+ P QQ LI GK L+D TL+
Sbjct: 1 MQIFVKTLTGKTITLDVEPSDTIDAVKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLS 57
Query: 61 DNKVSEDGFLVVMLS 75
D + ++ L ++L
Sbjct: 58 DYNIQKESTLHLVLR 72
>gi|123479154|ref|XP_001322736.1| polyubiquitin [Trichomonas vaginalis G3]
gi|121905588|gb|EAY10513.1| polyubiquitin, putative [Trichomonas vaginalis G3]
Length = 77
Score = 51.6 bits (122), Expect = 3e-04, Method: Composition-based stats.
Identities = 29/74 (39%), Positives = 42/74 (56%), Gaps = 3/74 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G H + V+ +D + VK I+D K+ P QQ LI GK L+D TL
Sbjct: 1 MQIFVKTLTGKHITLEVESTDRIEDVKAKIQD---KEGIPPDQQRLIFAGKQLEDGNTLQ 57
Query: 61 DNKVSEDGFLVVML 74
D + +D L ++L
Sbjct: 58 DYSIQKDSTLHLVL 71
>gi|402232869|gb|AFQ36934.1| ribosomal protein S27-3, partial [Salvelinus fontinalis]
Length = 124
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 34/95 (35%), Positives = 51/95 (53%), Gaps = 7/95 (7%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D +G P QQ LI GK L+D TL+
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 61 DNKVSEDGFLVVMLSKSKTLGSAGASSAQPAHTTP 95
D + ++ L ++L L + ++TTP
Sbjct: 58 DYNIQKESTLHLVLR----LRGGAKKRKKKSYTTP 88
>gi|197725013|pdb|2ZNV|C Chain C, Crystal Structure Of Human Amsh-Lp Dub Domain In Complex
With Lys63-Linked Ubiquitin Dimer
gi|197725016|pdb|2ZNV|F Chain F, Crystal Structure Of Human Amsh-Lp Dub Domain In Complex
With Lys63-Linked Ubiquitin Dimer
gi|254574781|pdb|3A1Q|A Chain A, Crystal Structure Of The Mouse Rap80 Uims In Complex
With Lys63-Linked Di-Ubiquitin
gi|254574784|pdb|3A1Q|D Chain D, Crystal Structure Of The Mouse Rap80 Uims In Complex
With Lys63-Linked Di-Ubiquitin
gi|262118712|pdb|3JSV|B Chain B, Crystal Structure Of Mouse Nemo Cozi In Complex With
Lys63- Linked Di-Ubiquitin
gi|270346452|pdb|3A9J|B Chain B, Crystal Structure Of The Mouse Tab2-Nzf In Complex With
Lys63-Linked Di-Ubiquitin
gi|270346455|pdb|3A9K|B Chain B, Crystal Structure Of The Mouse Tab3-Nzf In Complex With
Lys63-Linked Di-Ubiquitin
gi|399217517|emb|CCF74404.1| unnamed protein product [Babesia microti strain RI]
Length = 77
Score = 51.6 bits (122), Expect = 3e-04, Method: Composition-based stats.
Identities = 30/74 (40%), Positives = 44/74 (59%), Gaps = 3/74 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D K+ P QQ LI GK L+D TL+
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLS 57
Query: 61 DNKVSEDGFLVVML 74
D + ++ L ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|196004302|ref|XP_002112018.1| conserved hypothetical protein [Trichoplax adhaerens]
gi|190585917|gb|EDV25985.1| conserved hypothetical protein [Trichoplax adhaerens]
Length = 77
Score = 51.6 bits (122), Expect = 3e-04, Method: Composition-based stats.
Identities = 28/75 (37%), Positives = 44/75 (58%), Gaps = 3/75 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M + VKTL G EI ++P+D V +K+ +E+ K+ P QQ LI +GK + DE T A
Sbjct: 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEE---KEGIPPQQQRLIFSGKQMNDEKTAA 57
Query: 61 DNKVSEDGFLVVMLS 75
+ K+ L ++L+
Sbjct: 58 EYKIQGGSVLHLVLA 72
>gi|442762197|gb|JAA73257.1| Putative ubiquitin/40s ribosomal protein s27a fusion, partial
[Ixodes ricinus]
Length = 129
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 44/75 (58%), Gaps = 3/75 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D K+ P QQ LI GK L+D TL+
Sbjct: 53 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLS 109
Query: 61 DNKVSEDGFLVVMLS 75
D + ++ L ++L
Sbjct: 110 DYNIQKESTLHLVLR 124
>gi|51247357|pdb|1SIF|A Chain A, Crystal Structure Of A Multiple Hydrophobic Core Mutant
Of Ubiquitin
Length = 88
Score = 51.6 bits (122), Expect = 3e-04, Method: Composition-based stats.
Identities = 28/74 (37%), Positives = 45/74 (60%), Gaps = 3/74 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
++L +KTL G F + ++PSDT+ +K I+D K+ P QQ LI GK L+D TL+
Sbjct: 10 LQLFIKTLTGKTFTVEMEPSDTIENLKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLS 66
Query: 61 DNKVSEDGFLVVML 74
D + ++ L ++L
Sbjct: 67 DYNIQKESTLHLVL 80
>gi|194749344|ref|XP_001957099.1| GF10254 [Drosophila ananassae]
gi|190624381|gb|EDV39905.1| GF10254 [Drosophila ananassae]
Length = 837
Score = 51.6 bits (122), Expect = 3e-04, Method: Composition-based stats.
Identities = 30/74 (40%), Positives = 44/74 (59%), Gaps = 3/74 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D K+ P QQ LI GK L+D TL+
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLS 57
Query: 61 DNKVSEDGFLVVML 74
D + ++ L ++L
Sbjct: 58 DYNIQKESTLHLVL 71
Score = 51.6 bits (122), Expect = 3e-04, Method: Composition-based stats.
Identities = 30/74 (40%), Positives = 44/74 (59%), Gaps = 3/74 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D K+ P QQ LI GK L+D TL+
Sbjct: 77 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLS 133
Query: 61 DNKVSEDGFLVVML 74
D + ++ L ++L
Sbjct: 134 DYNIQKESTLHLVL 147
Score = 51.6 bits (122), Expect = 3e-04, Method: Composition-based stats.
Identities = 30/74 (40%), Positives = 44/74 (59%), Gaps = 3/74 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D K+ P QQ LI GK L+D TL+
Sbjct: 153 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLS 209
Query: 61 DNKVSEDGFLVVML 74
D + ++ L ++L
Sbjct: 210 DYNIQKESTLHLVL 223
Score = 51.6 bits (122), Expect = 3e-04, Method: Composition-based stats.
Identities = 30/74 (40%), Positives = 44/74 (59%), Gaps = 3/74 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D K+ P QQ LI GK L+D TL+
Sbjct: 229 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLS 285
Query: 61 DNKVSEDGFLVVML 74
D + ++ L ++L
Sbjct: 286 DYNIQKESTLHLVL 299
Score = 51.6 bits (122), Expect = 3e-04, Method: Composition-based stats.
Identities = 30/74 (40%), Positives = 44/74 (59%), Gaps = 3/74 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D K+ P QQ LI GK L+D TL+
Sbjct: 305 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLS 361
Query: 61 DNKVSEDGFLVVML 74
D + ++ L ++L
Sbjct: 362 DYNIQKESTLHLVL 375
Score = 51.6 bits (122), Expect = 3e-04, Method: Composition-based stats.
Identities = 30/74 (40%), Positives = 44/74 (59%), Gaps = 3/74 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D K+ P QQ LI GK L+D TL+
Sbjct: 381 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLS 437
Query: 61 DNKVSEDGFLVVML 74
D + ++ L ++L
Sbjct: 438 DYNIQKESTLHLVL 451
Score = 51.6 bits (122), Expect = 3e-04, Method: Composition-based stats.
Identities = 30/74 (40%), Positives = 44/74 (59%), Gaps = 3/74 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D K+ P QQ LI GK L+D TL+
Sbjct: 457 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLS 513
Query: 61 DNKVSEDGFLVVML 74
D + ++ L ++L
Sbjct: 514 DYNIQKESTLHLVL 527
Score = 51.6 bits (122), Expect = 3e-04, Method: Composition-based stats.
Identities = 30/74 (40%), Positives = 44/74 (59%), Gaps = 3/74 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D K+ P QQ LI GK L+D TL+
Sbjct: 533 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLS 589
Query: 61 DNKVSEDGFLVVML 74
D + ++ L ++L
Sbjct: 590 DYNIQKESTLHLVL 603
Score = 51.6 bits (122), Expect = 3e-04, Method: Composition-based stats.
Identities = 30/74 (40%), Positives = 44/74 (59%), Gaps = 3/74 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D K+ P QQ LI GK L+D TL+
Sbjct: 609 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLS 665
Query: 61 DNKVSEDGFLVVML 74
D + ++ L ++L
Sbjct: 666 DYNIQKESTLHLVL 679
Score = 51.6 bits (122), Expect = 3e-04, Method: Composition-based stats.
Identities = 30/74 (40%), Positives = 44/74 (59%), Gaps = 3/74 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D K+ P QQ LI GK L+D TL+
Sbjct: 685 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLS 741
Query: 61 DNKVSEDGFLVVML 74
D + ++ L ++L
Sbjct: 742 DYNIQKESTLHLVL 755
Score = 51.6 bits (122), Expect = 3e-04, Method: Composition-based stats.
Identities = 30/74 (40%), Positives = 44/74 (59%), Gaps = 3/74 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D K+ P QQ LI GK L+D TL+
Sbjct: 761 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLS 817
Query: 61 DNKVSEDGFLVVML 74
D + ++ L ++L
Sbjct: 818 DYNIQKESTLHLVL 831
>gi|323449091|gb|EGB04982.1| ubiquitin [Aureococcus anophagefferens]
Length = 78
Score = 51.6 bits (122), Expect = 4e-04, Method: Composition-based stats.
Identities = 30/74 (40%), Positives = 45/74 (60%), Gaps = 3/74 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK+ I+D K+ P QQ LI GK L+D TL+
Sbjct: 1 MQIFVKTLTGKTITLDVEPSDTIDNVKQKIQD---KEGIPPDQQRLIFAGKQLEDGRTLS 57
Query: 61 DNKVSEDGFLVVML 74
D + ++ L ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|208435644|pdb|3DVG|X Chain X, Crystal Structure Of K63-Specific Fab Apu.3a8 Bound To
K63-Linked Di- Ubiquitin
gi|208435648|pdb|3DVN|X Chain X, Crystal Structure Of K63-specific Fab Apu2.16 Bound To
K63-linked Di- Ubiquitin
gi|208435652|pdb|3DVN|U Chain U, Crystal Structure Of K63-specific Fab Apu2.16 Bound To
K63-linked Di- Ubiquitin
Length = 80
Score = 51.6 bits (122), Expect = 4e-04, Method: Composition-based stats.
Identities = 30/74 (40%), Positives = 44/74 (59%), Gaps = 3/74 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D K+ P QQ LI GK L+D TL+
Sbjct: 4 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLS 60
Query: 61 DNKVSEDGFLVVML 74
D + ++ L ++L
Sbjct: 61 DYNIQKESTLHLVL 74
>gi|5523979|gb|AAD44042.1|AF104025_1 polyprotein [Bovine viral diarrhea virus 2]
Length = 432
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 44/75 (58%), Gaps = 3/75 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D K+ P QQ LI GK L+D TL+
Sbjct: 224 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLS 280
Query: 61 DNKVSEDGFLVVMLS 75
D + ++ L ++L
Sbjct: 281 DYNIQKESTLHLVLR 295
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 44/75 (58%), Gaps = 3/75 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D K+ P QQ LI GK L+D TL+
Sbjct: 300 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLS 356
Query: 61 DNKVSEDGFLVVMLS 75
D + ++ L ++L
Sbjct: 357 DYNIQKESTLHLVLR 371
>gi|335892055|pdb|2LD9|A Chain A, Backbone Structure Of Ubiquitin Determined Using
Backbone Amide Noes And Backbone N-H And N-C Rdcs
Length = 77
Score = 51.6 bits (122), Expect = 4e-04, Method: Composition-based stats.
Identities = 30/74 (40%), Positives = 44/74 (59%), Gaps = 3/74 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D K+ P QQ LI GK L+D TL+
Sbjct: 2 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLS 58
Query: 61 DNKVSEDGFLVVML 74
D + ++ L ++L
Sbjct: 59 DYNIQKESTLHLVL 72
>gi|302566232|pdb|3NOB|A Chain A, Structure Of K11-Linked Di-Ubiquitin
gi|302566233|pdb|3NOB|B Chain B, Structure Of K11-Linked Di-Ubiquitin
gi|302566234|pdb|3NOB|C Chain C, Structure Of K11-Linked Di-Ubiquitin
gi|302566235|pdb|3NOB|D Chain D, Structure Of K11-Linked Di-Ubiquitin
gi|302566236|pdb|3NOB|E Chain E, Structure Of K11-Linked Di-Ubiquitin
gi|302566237|pdb|3NOB|F Chain F, Structure Of K11-Linked Di-Ubiquitin
gi|302566238|pdb|3NOB|G Chain G, Structure Of K11-Linked Di-Ubiquitin
gi|302566239|pdb|3NOB|H Chain H, Structure Of K11-Linked Di-Ubiquitin
Length = 78
Score = 51.6 bits (122), Expect = 4e-04, Method: Composition-based stats.
Identities = 30/74 (40%), Positives = 44/74 (59%), Gaps = 3/74 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D K+ P QQ LI GK L+D TL+
Sbjct: 3 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLS 59
Query: 61 DNKVSEDGFLVVML 74
D + ++ L ++L
Sbjct: 60 DYNIQKESTLHLVL 73
>gi|228861638|ref|YP_002854658.1| ubiquitin [Euproctis pseudoconspersa nucleopolyhedrovirus]
gi|226425086|gb|ACO53498.1| ubiquitin [Euproctis pseudoconspersa nucleopolyhedrovirus]
Length = 78
Score = 51.6 bits (122), Expect = 4e-04, Method: Composition-based stats.
Identities = 29/74 (39%), Positives = 45/74 (60%), Gaps = 3/74 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+ SDTV A+K+ I+D K+ P QQ LI+ GK L D T++
Sbjct: 1 MQIFVKTLTGKTVTLEVESSDTVEAIKQKIQD---KEGIPPDQQRLIYAGKQLDDSKTVS 57
Query: 61 DNKVSEDGFLVVML 74
D + ++ L ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|194866181|ref|XP_001971796.1| GG14240 [Drosophila erecta]
gi|190653579|gb|EDV50822.1| GG14240 [Drosophila erecta]
Length = 991
Score = 51.6 bits (122), Expect = 4e-04, Method: Composition-based stats.
Identities = 30/74 (40%), Positives = 44/74 (59%), Gaps = 3/74 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D K+ P QQ LI GK L+D TL+
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLS 57
Query: 61 DNKVSEDGFLVVML 74
D + ++ L ++L
Sbjct: 58 DYNIQKESTLHLVL 71
Score = 51.6 bits (122), Expect = 4e-04, Method: Composition-based stats.
Identities = 30/74 (40%), Positives = 44/74 (59%), Gaps = 3/74 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D K+ P QQ LI GK L+D TL+
Sbjct: 77 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLS 133
Query: 61 DNKVSEDGFLVVML 74
D + ++ L ++L
Sbjct: 134 DYNIQKESTLHLVL 147
Score = 51.6 bits (122), Expect = 4e-04, Method: Composition-based stats.
Identities = 30/74 (40%), Positives = 44/74 (59%), Gaps = 3/74 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D K+ P QQ LI GK L+D TL+
Sbjct: 153 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLS 209
Query: 61 DNKVSEDGFLVVML 74
D + ++ L ++L
Sbjct: 210 DYNIQKESTLHLVL 223
Score = 51.6 bits (122), Expect = 4e-04, Method: Composition-based stats.
Identities = 30/74 (40%), Positives = 44/74 (59%), Gaps = 3/74 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D K+ P QQ LI GK L+D TL+
Sbjct: 229 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLS 285
Query: 61 DNKVSEDGFLVVML 74
D + ++ L ++L
Sbjct: 286 DYNIQKESTLHLVL 299
Score = 51.6 bits (122), Expect = 4e-04, Method: Composition-based stats.
Identities = 30/74 (40%), Positives = 44/74 (59%), Gaps = 3/74 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D K+ P QQ LI GK L+D TL+
Sbjct: 305 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLS 361
Query: 61 DNKVSEDGFLVVML 74
D + ++ L ++L
Sbjct: 362 DYNIQKESTLHLVL 375
Score = 51.6 bits (122), Expect = 4e-04, Method: Composition-based stats.
Identities = 30/74 (40%), Positives = 44/74 (59%), Gaps = 3/74 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D K+ P QQ LI GK L+D TL+
Sbjct: 381 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLS 437
Query: 61 DNKVSEDGFLVVML 74
D + ++ L ++L
Sbjct: 438 DYNIQKESTLHLVL 451
Score = 51.6 bits (122), Expect = 4e-04, Method: Composition-based stats.
Identities = 30/74 (40%), Positives = 44/74 (59%), Gaps = 3/74 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D K+ P QQ LI GK L+D TL+
Sbjct: 457 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLS 513
Query: 61 DNKVSEDGFLVVML 74
D + ++ L ++L
Sbjct: 514 DYNIQKESTLHLVL 527
Score = 51.6 bits (122), Expect = 4e-04, Method: Composition-based stats.
Identities = 30/74 (40%), Positives = 44/74 (59%), Gaps = 3/74 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D K+ P QQ LI GK L+D TL+
Sbjct: 533 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLS 589
Query: 61 DNKVSEDGFLVVML 74
D + ++ L ++L
Sbjct: 590 DYNIQKESTLHLVL 603
Score = 51.6 bits (122), Expect = 4e-04, Method: Composition-based stats.
Identities = 30/74 (40%), Positives = 44/74 (59%), Gaps = 3/74 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D K+ P QQ LI GK L+D TL+
Sbjct: 609 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLS 665
Query: 61 DNKVSEDGFLVVML 74
D + ++ L ++L
Sbjct: 666 DYNIQKESTLHLVL 679
Score = 51.6 bits (122), Expect = 4e-04, Method: Composition-based stats.
Identities = 30/74 (40%), Positives = 44/74 (59%), Gaps = 3/74 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D K+ P QQ LI GK L+D TL+
Sbjct: 685 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLS 741
Query: 61 DNKVSEDGFLVVML 74
D + ++ L ++L
Sbjct: 742 DYNIQKESTLHLVL 755
Score = 51.6 bits (122), Expect = 4e-04, Method: Composition-based stats.
Identities = 30/74 (40%), Positives = 44/74 (59%), Gaps = 3/74 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D K+ P QQ LI GK L+D TL+
Sbjct: 761 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLS 817
Query: 61 DNKVSEDGFLVVML 74
D + ++ L ++L
Sbjct: 818 DYNIQKESTLHLVL 831
Score = 51.6 bits (122), Expect = 4e-04, Method: Composition-based stats.
Identities = 30/74 (40%), Positives = 44/74 (59%), Gaps = 3/74 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D K+ P QQ LI GK L+D TL+
Sbjct: 837 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLS 893
Query: 61 DNKVSEDGFLVVML 74
D + ++ L ++L
Sbjct: 894 DYNIQKESTLHLVL 907
Score = 51.6 bits (122), Expect = 4e-04, Method: Composition-based stats.
Identities = 30/74 (40%), Positives = 44/74 (59%), Gaps = 3/74 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D K+ P QQ LI GK L+D TL+
Sbjct: 913 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLS 969
Query: 61 DNKVSEDGFLVVML 74
D + ++ L ++L
Sbjct: 970 DYNIQKESTLHLVL 983
>gi|51701999|sp|Q865C5.2|UBIQ_CAMDR RecName: Full=Ubiquitin
gi|51703336|sp|P62975.1|UBIQ_RABIT RecName: Full=Ubiquitin
gi|67474910|sp|P68197.1|UBIQ_CERCA RecName: Full=Ubiquitin
gi|442599|pdb|1AAR|A Chain A, Structure Of A Diubiquitin Conjugate And A Model For
Interaction With Ubiquitin Conjugating Enzyme (E2)
gi|442600|pdb|1AAR|B Chain B, Structure Of A Diubiquitin Conjugate And A Model For
Interaction With Ubiquitin Conjugating Enzyme (E2)
gi|494630|pdb|1TBE|A Chain A, Structure Of Tetraubiquitin Shows How Multiubiquitin
Chains Can Be Formed
gi|494631|pdb|1TBE|B Chain B, Structure Of Tetraubiquitin Shows How Multiubiquitin
Chains Can Be Formed
gi|13096129|pdb|1F9J|A Chain A, Structure Of A New Crystal Form Of Tetraubiquitin
gi|13096130|pdb|1F9J|B Chain B, Structure Of A New Crystal Form Of Tetraubiquitin
gi|33357851|pdb|1P3Q|U Chain U, Mechanism Of Ubiquitin Recognition By The Cue Domain Of
Vps9
gi|33357852|pdb|1P3Q|V Chain V, Mechanism Of Ubiquitin Recognition By The Cue Domain Of
Vps9
gi|47169417|pdb|1UZX|B Chain B, A Complex Of The Vps23 Uev With Ubiquitin
gi|61680603|pdb|1YD8|U Chain U, Complex Of Human Gga3 Gat Domain And Ubiquitin
gi|61680605|pdb|1YD8|V Chain V, Complex Of Human Gga3 Gat Domain And Ubiquitin
gi|71041888|pdb|1WR6|E Chain E, Crystal Structure Of Gga3 Gat Domain In Complex With
Ubiquitin
gi|71041889|pdb|1WR6|F Chain F, Crystal Structure Of Gga3 Gat Domain In Complex With
Ubiquitin
gi|71041890|pdb|1WR6|G Chain G, Crystal Structure Of Gga3 Gat Domain In Complex With
Ubiquitin
gi|71041891|pdb|1WR6|H Chain H, Crystal Structure Of Gga3 Gat Domain In Complex With
Ubiquitin
gi|82407398|pdb|1WRD|B Chain B, Crystal Structure Of Tom1 Gat Domain In Complex With
Ubiquitin
gi|85544518|pdb|2D3G|A Chain A, Double Sided Ubiquitin Binding Of Hrs-Uim
gi|85544519|pdb|2D3G|B Chain B, Double Sided Ubiquitin Binding Of Hrs-Uim
gi|90109001|pdb|2C7M|B Chain B, Human Rabex-5 Residues 1-74 In Complex With Ubiquitin
gi|90109003|pdb|2C7N|B Chain B, Human Rabex-5 Residues 1-74 In Complex With Ubiquitin
gi|90109005|pdb|2C7N|D Chain D, Human Rabex-5 Residues 1-74 In Complex With Ubiquitin
gi|90109007|pdb|2C7N|F Chain F, Human Rabex-5 Residues 1-74 In Complex With Ubiquitin
gi|90109009|pdb|2C7N|H Chain H, Human Rabex-5 Residues 1-74 In Complex With Ubiquitin
gi|90109011|pdb|2C7N|J Chain J, Human Rabex-5 Residues 1-74 In Complex With Ubiquitin
gi|90109013|pdb|2C7N|L Chain L, Human Rabex-5 Residues 1-74 In Complex With Ubiquitin
gi|90109430|pdb|2FID|A Chain A, Crystal Structure Of A Bovine Rabex-5 Fragment Complexed
With Ubiquitin
gi|90109436|pdb|2FIF|A Chain A, Crystal Structure Of A Bovine Rabex-5 Fragment Complexed
With Ubiquitin
gi|90109438|pdb|2FIF|C Chain C, Crystal Structure Of A Bovine Rabex-5 Fragment Complexed
With Ubiquitin
gi|90109440|pdb|2FIF|E Chain E, Crystal Structure Of A Bovine Rabex-5 Fragment Complexed
With Ubiquitin
gi|93279866|pdb|2G45|B Chain B, Co-Crystal Structure Of Znf Ubp Domain From The
Deubiquitinating Enzyme Isopeptidase T (Isot) In
Complex With Ubiquitin
gi|93279868|pdb|2G45|E Chain E, Co-Crystal Structure Of Znf Ubp Domain From The
Deubiquitinating Enzyme Isopeptidase T (Isot) In
Complex With Ubiquitin
gi|114794333|pdb|2HD5|B Chain B, Usp2 In Complex With Ubiquitin
gi|116667303|pdb|2GMI|C Chain C, Mms2UBC13~UBIQUITIN
gi|118137630|pdb|2DX5|B Chain B, The Complex Structure Between The Mouse Eap45-Glue
Domain And Ubiquitin
gi|118137970|pdb|2HTH|A Chain A, Structural Basis For Ubiquitin Recognition By The Human
Eap45ESCRT-Ii Glue Domain
gi|126031708|pdb|2OOB|B Chain B, Crystal Structure Of The Uba Domain From Cbl-B Ubiquitin
Ligase In Complex With Ubiquitin
gi|134105062|pdb|2O6V|A Chain A, Crystal Structure And Solution Nmr Studies Of
Lys48-Linked Tetraubiquitin At Neutral Ph
gi|134105064|pdb|2O6V|C Chain C, Crystal Structure And Solution Nmr Studies Of
Lys48-Linked Tetraubiquitin At Neutral Ph
gi|134105066|pdb|2O6V|E Chain E, Crystal Structure And Solution Nmr Studies Of
Lys48-Linked Tetraubiquitin At Neutral Ph
gi|134105068|pdb|2O6V|G Chain G, Crystal Structure And Solution Nmr Studies Of
Lys48-Linked Tetraubiquitin At Neutral Ph
gi|152149262|pdb|2PE9|A Chain A, Nmr Based Structure Of The Open Conformation Of Lys48-
Linked Di-Ubiquitin Using Experimental Global
Rotational Diffusion Tensor From Nmr Relaxation
Measurements
gi|152149263|pdb|2PE9|B Chain B, Nmr Based Structure Of The Open Conformation Of Lys48-
Linked Di-Ubiquitin Using Experimental Global
Rotational Diffusion Tensor From Nmr Relaxation
Measurements
gi|152149264|pdb|2PEA|A Chain A, Nmr Based Structure Of The Closed Conformation Of Lys48-
Linked Di-Ubiquitin Using Experimental Global
Rotational Diffusion Tensor From Nmr Relaxation
Measurements
gi|152149265|pdb|2PEA|B Chain B, Nmr Based Structure Of The Closed Conformation Of Lys48-
Linked Di-Ubiquitin Using Experimental Global
Rotational Diffusion Tensor From Nmr Relaxation
Measurements
gi|157834056|pdb|1UBI|A Chain A, Synthetic Structural And Biological Studies Of The
Ubiquitin System. Part 1
gi|157834057|pdb|1UBQ|A Chain A, Structure Of Ubiquitin Refined At 1.8 Angstroms
Resolution
gi|158430212|pdb|2QHO|A Chain A, Crystal Structure Of The Uba Domain From Edd Ubiquitin
Ligase In Complex With Ubiquitin
gi|158430214|pdb|2QHO|C Chain C, Crystal Structure Of The Uba Domain From Edd Ubiquitin
Ligase In Complex With Ubiquitin
gi|158430216|pdb|2QHO|E Chain E, Crystal Structure Of The Uba Domain From Edd Ubiquitin
Ligase In Complex With Ubiquitin
gi|158430218|pdb|2QHO|G Chain G, Crystal Structure Of The Uba Domain From Edd Ubiquitin
Ligase In Complex With Ubiquitin
gi|159162189|pdb|1D3Z|A Chain A, Ubiquitin Nmr Structure
gi|159162335|pdb|1FXT|B Chain B, Structure Of A Conjugating Enzyme-Ubiquitin Thiolester
Complex
gi|159162877|pdb|1Q5W|B Chain B, Ubiquitin Recognition By Npl4 Zinc-Fingers
gi|159163207|pdb|1V80|A Chain A, Solution Structures Of Ubiquitin At 30 Bar And 3 Kbar
gi|159163208|pdb|1V81|A Chain A, Solution Structures Of Ubiquitin At 30 Bar And 3 Kbar
gi|159163622|pdb|1XQQ|A Chain A, Simultaneous Determination Of Protein Structure And
Dynamics
gi|159163779|pdb|2BGF|A Chain A, Nmr Structure Of Lys48-Linked Di-Ubiquitin Using
Chemical Shift Perturbation Data Together With Rdcs And
15n- Relaxation Data
gi|159163780|pdb|2BGF|B Chain B, Nmr Structure Of Lys48-Linked Di-Ubiquitin Using
Chemical Shift Perturbation Data Together With Rdcs And
15n- Relaxation Data
gi|159164087|pdb|2DEN|B Chain B, Solution Structure Of The Ubiquitin-Associated Domain Of
Human Bmsc-Ubp And Its Complex With Ubiquitin
gi|159164557|pdb|2FUH|B Chain B, Solution Structure Of The Ubch5cUB NON-Covalent Complex
gi|159164745|pdb|2NR2|A Chain A, The Mumo (Minimal Under-Restraining Minimal Over-
Restraining) Method For The Determination Of Native
States Ensembles Of Proteins
gi|160877887|pdb|2ZCC|A Chain A, Ubiquitin Crystallized Under High Pressure
gi|160877888|pdb|2ZCC|B Chain B, Ubiquitin Crystallized Under High Pressure
gi|160877889|pdb|2ZCC|C Chain C, Ubiquitin Crystallized Under High Pressure
gi|167013220|pdb|2JF5|A Chain A, Crystal Structure Of Lys63-Linked Di-Ubiquitin
gi|167013221|pdb|2JF5|B Chain B, Crystal Structure Of Lys63-Linked Di-Ubiquitin
gi|170292211|pdb|2JY6|A Chain A, Solution Structure Of The Complex Of Ubiquitin And
Ubiquilin 1 Uba Domain
gi|170784968|pdb|2JZZ|A Chain A, Solid-State Nmr Structure Of Microcrystalline Ubiquitin
gi|188595918|pdb|2Z59|B Chain B, Complex Structures Of Mouse Rpn13 (22-130aa) And
Ubiquitin
gi|192987140|pdb|2K39|A Chain A, Recognition Dynamics Up To Microseconds Revealed From
Rdc Derived Ubiquitin Ensemble In Solution
gi|193506479|pdb|2JRI|B Chain B, Solution Structure Of The Josephin Domain Of Ataxin-3 In
Complex With Ubiquitin Molecule.
gi|193506480|pdb|2JRI|C Chain C, Solution Structure Of The Josephin Domain Of Ataxin-3 In
Complex With Ubiquitin Molecule.
gi|217035436|pdb|3EFU|A Chain A, X-Ray Structure Of Human Ubiquitin-Hg(Ii) Adduct
gi|224983544|pdb|3EEC|A Chain A, X-Ray Structure Of Human Ubiquitin Cd(Ii) Adduct
gi|224983545|pdb|3EEC|B Chain B, X-Ray Structure Of Human Ubiquitin Cd(Ii) Adduct
gi|225698036|pdb|3EHV|A Chain A, X-Ray Structure Of Human Ubiquitin Zn(Ii) Adduct
gi|225698037|pdb|3EHV|B Chain B, X-Ray Structure Of Human Ubiquitin Zn(Ii) Adduct
gi|225698038|pdb|3EHV|C Chain C, X-Ray Structure Of Human Ubiquitin Zn(Ii) Adduct
gi|229597558|pdb|2K8B|A Chain A, Solution Structure Of Plaa Family Ubiquitin Binding
Domain (Pfuc) Cis Isomer In Complex With Ubiquitin
gi|229597560|pdb|2K8C|A Chain A, Solution Structure Of Plaa Family Ubiquitin Binding
Domain (Pfuc) Trans Isomer In Complex With Ubiquitin
gi|229597964|pdb|3H1U|A Chain A, Structure Of Ubiquitin In Complex With Cd Ions
gi|229597965|pdb|3H1U|B Chain B, Structure Of Ubiquitin In Complex With Cd Ions
gi|256599792|pdb|3HM3|A Chain A, The Structure And Conformation Of Lys-63 Linked
Tetra-Ubiquitin
gi|256599793|pdb|3HM3|B Chain B, The Structure And Conformation Of Lys-63 Linked
Tetra-Ubiquitin
gi|256599794|pdb|3HM3|C Chain C, The Structure And Conformation Of Lys-63 Linked
Tetra-Ubiquitin
gi|256599795|pdb|3HM3|D Chain D, The Structure And Conformation Of Lys-63 Linked
Tetra-Ubiquitin
gi|257097061|pdb|2KDE|B Chain B, Nmr Structure Of Major S5a (196-306):k48 Linked
Diubiquitin Species
gi|257097062|pdb|2KDE|C Chain C, Nmr Structure Of Major S5a (196-306):k48 Linked
Diubiquitin Species
gi|257097064|pdb|2KDF|B Chain B, Nmr Structure Of Minor S5a (196-306):k48 Linked
Diubiquitin Species
gi|257097065|pdb|2KDF|C Chain C, Nmr Structure Of Minor S5a (196-306):k48 Linked
Diubiquitin Species
gi|259090228|pdb|3H7P|B Chain B, Crystal Structure Of K63-Linked Di-Ubiquitin
gi|260656105|pdb|2KLG|A Chain A, Pere Nmr Structure Of Ubiquitin
gi|268612048|pdb|2KN5|A Chain A, A Correspondence Between Solution-State Dynamics Of An
Individual Protein And The Sequence And Conformational
Diversity Of Its Family
gi|269914355|pdb|2WWZ|A Chain A, Tab2 Nzf Domain In Complex With Lys63-Linked
Di-Ubiquitin, P212121
gi|269914356|pdb|2WWZ|B Chain B, Tab2 Nzf Domain In Complex With Lys63-Linked
Di-Ubiquitin, P212121
gi|269914358|pdb|2WX0|A Chain A, Tab2 Nzf Domain In Complex With Lys63-Linked
Di-Ubiquitin, P21
gi|269914359|pdb|2WX0|B Chain B, Tab2 Nzf Domain In Complex With Lys63-Linked
Di-Ubiquitin, P21
gi|269914360|pdb|2WX0|E Chain E, Tab2 Nzf Domain In Complex With Lys63-Linked
Di-Ubiquitin, P21
gi|269914361|pdb|2WX0|F Chain F, Tab2 Nzf Domain In Complex With Lys63-Linked
Di-Ubiquitin, P21
gi|269914364|pdb|2WX1|A Chain A, Tab2 Nzf Domain In Complex With Lys63-Linked
Tri-Ubiquitin, P212121
gi|269914365|pdb|2WX1|B Chain B, Tab2 Nzf Domain In Complex With Lys63-Linked
Tri-Ubiquitin, P212121
gi|269914375|pdb|3A33|B Chain B, Ubch5b~ubiquitin Conjugate
gi|291463747|pdb|3M3J|A Chain A, A New Crystal Form Of Lys48-Linked Diubiquitin
gi|291463748|pdb|3M3J|B Chain B, A New Crystal Form Of Lys48-Linked Diubiquitin
gi|291463749|pdb|3M3J|C Chain C, A New Crystal Form Of Lys48-Linked Diubiquitin
gi|291463750|pdb|3M3J|D Chain D, A New Crystal Form Of Lys48-Linked Diubiquitin
gi|291463751|pdb|3M3J|E Chain E, A New Crystal Form Of Lys48-Linked Diubiquitin
gi|291463752|pdb|3M3J|F Chain F, A New Crystal Form Of Lys48-Linked Diubiquitin
gi|299856910|pdb|3NHE|B Chain B, High Resolution Structure (1.26a) Of Usp2a In Complex
With Ubiquitin
gi|300508359|pdb|2XEW|A Chain A, Crystal Structure Of K11-Linked Diubiquitin
gi|300508360|pdb|2XEW|B Chain B, Crystal Structure Of K11-Linked Diubiquitin
gi|300508361|pdb|2XEW|C Chain C, Crystal Structure Of K11-Linked Diubiquitin
gi|300508362|pdb|2XEW|D Chain D, Crystal Structure Of K11-Linked Diubiquitin
gi|300508363|pdb|2XEW|E Chain E, Crystal Structure Of K11-Linked Diubiquitin
gi|300508364|pdb|2XEW|F Chain F, Crystal Structure Of K11-Linked Diubiquitin
gi|300508365|pdb|2XEW|G Chain G, Crystal Structure Of K11-Linked Diubiquitin
gi|300508366|pdb|2XEW|H Chain H, Crystal Structure Of K11-Linked Diubiquitin
gi|300508367|pdb|2XEW|I Chain I, Crystal Structure Of K11-Linked Diubiquitin
gi|300508368|pdb|2XEW|J Chain J, Crystal Structure Of K11-Linked Diubiquitin
gi|300508369|pdb|2XEW|K Chain K, Crystal Structure Of K11-Linked Diubiquitin
gi|300508370|pdb|2XEW|L Chain L, Crystal Structure Of K11-Linked Diubiquitin
gi|304445693|pdb|2XK5|A Chain A, Crystal Structure Of K6-Linked Diubiquitin
gi|304445752|pdb|3ALB|A Chain A, Cyclic Lys48-Linked Tetraubiquitin
gi|304445753|pdb|3ALB|B Chain B, Cyclic Lys48-Linked Tetraubiquitin
gi|304445754|pdb|3ALB|C Chain C, Cyclic Lys48-Linked Tetraubiquitin
gi|304445755|pdb|3ALB|D Chain D, Cyclic Lys48-Linked Tetraubiquitin
gi|306440714|pdb|3OFI|C Chain C, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Ubiquitin
gi|306440715|pdb|3OFI|D Chain D, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Ubiquitin
gi|308198391|pdb|2KWU|B Chain B, Solution Structure Of Ubm2 Of Murine Polymerase Iota In
Complex With Ubiquitin
gi|308198393|pdb|2KWV|B Chain B, Solution Structure Of Ubm1 Of Murine Polymerase Iota In
Complex With Ubiquitin
gi|310942516|pdb|2KTF|A Chain A, Solution Nmr Structure Of Human Polymerase Iota Ubm2 In
Complex With Ubiquitin
gi|310942521|pdb|2L0F|A Chain A, Solution Nmr Structure Of Human Polymerase Iota Ubm2
(P692a Mutant) In Complex With Ubiquitin
gi|315113181|pdb|2L0T|A Chain A, Solution Structure Of The Complex Of Ubiquitin And The
Vhs Domain Of Stam2
gi|317455223|pdb|3N30|A Chain A, Crystal Structure Of Cubic Zn3-Hub (Human Ubiquitin)
Adduct
gi|317455224|pdb|3N30|B Chain B, Crystal Structure Of Cubic Zn3-Hub (Human Ubiquitin)
Adduct
gi|317455225|pdb|3N32|A Chain A, The Crystal Structure Of Human Ubiquitin Adduct With
Zeise's Salt
gi|323462754|pdb|2L3Z|A Chain A, Proton-Detected 4d Dream Solid-State Nmr Structure Of
Ubiquitin
gi|323714528|pdb|3PHD|E Chain E, Crystal Structure Of Human Hdac6 In Complex With
Ubiquitin
gi|323714529|pdb|3PHD|F Chain F, Crystal Structure Of Human Hdac6 In Complex With
Ubiquitin
gi|323714530|pdb|3PHD|G Chain G, Crystal Structure Of Human Hdac6 In Complex With
Ubiquitin
gi|323714531|pdb|3PHD|H Chain H, Crystal Structure Of Human Hdac6 In Complex With
Ubiquitin
gi|326634049|pdb|2XBB|C Chain C, Nedd4 Hect:ub Complex
gi|326634050|pdb|2XBB|D Chain D, Nedd4 Hect:ub Complex
gi|335892047|pdb|2KOX|A Chain A, Nmr Residual Dipolar Couplings Identify Long Range
Correlated Motions In The Backbone Of The Protein
Ubiquitin
gi|339717352|pdb|2RR9|A Chain A, The Solution Structure Of The K63-Ub2:tuims Complex
gi|339717353|pdb|2RR9|B Chain B, The Solution Structure Of The K63-Ub2:tuims Complex
gi|340780375|pdb|3NS8|A Chain A, Crystal Structure Of An Open Conformation Of
Lys48-Linked Diubiquitin At Ph 7.5
gi|340780376|pdb|3NS8|B Chain B, Crystal Structure Of An Open Conformation Of
Lys48-Linked Diubiquitin At Ph 7.5
gi|345531668|pdb|3AUL|A Chain A, Crystal Structure Of Wild-Type Lys48-Linked Diubiquitin
In An Open Conformation
gi|345531669|pdb|3AUL|B Chain B, Crystal Structure Of Wild-Type Lys48-Linked Diubiquitin
In An Open Conformation
gi|377656602|pdb|4DDG|I Chain I, Crystal Structure Of Human Otub1UBCH5B~UBUB
gi|377656606|pdb|4DDG|E Chain E, Crystal Structure Of Human Otub1UBCH5B~UBUB
gi|377656607|pdb|4DDG|F Chain F, Crystal Structure Of Human Otub1UBCH5B~UBUB
gi|377656614|pdb|4DDG|O Chain O, Crystal Structure Of Human Otub1UBCH5B~UBUB
gi|377656615|pdb|4DDG|P Chain P, Crystal Structure Of Human Otub1UBCH5B~UBUB
gi|377656630|pdb|4DDI|G Chain G, Crystal Structure Of Human Otub1UBCH5B~UBUB
gi|377656631|pdb|4DDI|H Chain H, Crystal Structure Of Human Otub1UBCH5B~UBUB
gi|377656632|pdb|4DDI|I Chain I, Crystal Structure Of Human Otub1UBCH5B~UBUB
gi|387766178|pdb|3UGB|B Chain B, Ubch5c~ubiquitin Conjugate
gi|388325684|pdb|3TBL|D Chain D, Structure Of Mono-Ubiquitinated Pcna: Implications For
Dna Polymerase Switching And Okazaki Fragment
Maturation
gi|388325685|pdb|3TBL|E Chain E, Structure Of Mono-Ubiquitinated Pcna: Implications For
Dna Polymerase Switching And Okazaki Fragment
Maturation
gi|388328110|pdb|4DDG|D Chain D, Crystal Structure Of Human Otub1UBCH5B~UBUB
gi|388328111|pdb|4DDG|G Chain G, Crystal Structure Of Human Otub1UBCH5B~UBUB
gi|388328112|pdb|4DDG|H Chain H, Crystal Structure Of Human Otub1UBCH5B~UBUB
gi|388328116|pdb|4DDG|M Chain M, Crystal Structure Of Human Otub1UBCH5B~UBUB
gi|388328117|pdb|4DDG|N Chain N, Crystal Structure Of Human Otub1UBCH5B~UBUB
gi|388328118|pdb|4DDG|Q Chain Q, Crystal Structure Of Human Otub1UBCH5B~UBUB
gi|388328119|pdb|4DDG|R Chain R, Crystal Structure Of Human Otub1UBCH5B~UBUB
gi|388328123|pdb|4DDI|D Chain D, Crystal Structure Of Human Otub1UBCH5B~UBUB
gi|388328124|pdb|4DDI|E Chain E, Crystal Structure Of Human Otub1UBCH5B~UBUB
gi|388328125|pdb|4DDI|F Chain F, Crystal Structure Of Human Otub1UBCH5B~UBUB
gi|395759236|pdb|2LJ5|A Chain A, Description Of The Structural Fluctuations Of Proteins
From Structure- Based Calculations Of Residual Dipolar
Couplings
gi|408535776|pdb|3VHT|C Chain C, Crystal Structure Of Gfp-Wrnip1 Ubz Domain Fusion
Protein In Complex With Ubiquitin
gi|422919050|pdb|2LVO|A Chain A, Structure Of The Gp78cue Domain Bound To Monubiquitin
gi|422919052|pdb|2LVP|A Chain A, Gp78cue Domain Bound To The Distal Ubiquitin Of
K48-Linked Diubiquitin
gi|422919053|pdb|2LVP|B Chain B, Gp78cue Domain Bound To The Distal Ubiquitin Of
K48-Linked Diubiquitin
gi|422919055|pdb|2LVQ|A Chain A, Gp78cue Domain Bound To The Proximal Ubiquitin Of
K48-Linked Diubiquitin
gi|422919056|pdb|2LVQ|B Chain B, Gp78cue Domain Bound To The Proximal Ubiquitin Of
K48-Linked Diubiquitin
gi|449802145|pdb|3VUW|A Chain A, Crystal Structure Of A20 Zf7 In Complex With Linear
Ubiquitin, Form I
gi|449802146|pdb|3VUW|B Chain B, Crystal Structure Of A20 Zf7 In Complex With Linear
Ubiquitin, Form I
gi|449802147|pdb|3VUW|C Chain C, Crystal Structure Of A20 Zf7 In Complex With Linear
Ubiquitin, Form I
gi|449802151|pdb|3VUX|A Chain A, Crystal Structure Of A20 Zf7 In Complex With Linear
Ubiquitin, Form Ii
gi|449802152|pdb|3VUX|B Chain B, Crystal Structure Of A20 Zf7 In Complex With Linear
Ubiquitin, Form Ii
gi|449802153|pdb|3VUX|C Chain C, Crystal Structure Of A20 Zf7 In Complex With Linear
Ubiquitin, Form Ii
gi|449802157|pdb|3VUY|A Chain A, Crystal Structure Of A20 Zf7 In Complex With Linear
Tetraubiquitin
gi|449802159|pdb|3VUY|C Chain C, Crystal Structure Of A20 Zf7 In Complex With Linear
Tetraubiquitin
gi|449802161|pdb|3VUY|B Chain B, Crystal Structure Of A20 Zf7 In Complex With Linear
Tetraubiquitin
gi|13172891|gb|AAK14237.1|AF321439_1 polyubiquitin GmUbinta [Galleria mellonella]
gi|13172893|gb|AAK14238.1|AF321440_1 polyubiquitin GmUbintb [Galleria mellonella]
gi|16903154|gb|AAL30431.1|AF436066_1 ubiquitin [Spodoptera litura]
gi|21314345|gb|AAM46899.1|AF506023_1 polyubiquitin [Tribolium castaneum]
gi|158757|gb|AAA28999.1| ubiquitin, partial [Drosophila melanogaster]
gi|158761|gb|AAA29001.1| ubiquitin, partial [Drosophila melanogaster]
gi|158773|gb|AAA29007.1| ubiquitin, partial [Drosophila melanogaster]
gi|208552|gb|AAA72608.1| synthetic ubiquitin [synthetic construct]
gi|264606|gb|AAB25195.1| ubiquitin [rabbits, brain, Peptide, 76 aa]
gi|510472|emb|CAA52423.1| ubiquitin unit VIII [Artemia franciscana]
gi|510474|emb|CAA52417.1| ubiquitin unit II [Artemia franciscana]
gi|510475|emb|CAA52418.1| ubiquitin unit III [Artemia franciscana]
gi|510477|emb|CAA52420.1| ubiquitin unit V [Artemia franciscana]
gi|510478|emb|CAA52421.1| ubiquitin unit VI [Artemia franciscana]
gi|510479|emb|CAA52422.1| ubiquitin unit VII [Artemia franciscana]
gi|510480|emb|CAA52415.1| ubiquitin unit I [Artemia franciscana]
gi|510481|emb|CAA52424.1| ubiquitin unit IX [Artemia franciscana]
gi|531569|emb|CAA48871.1| Ubiquitin-80 [Drosophila melanogaster]
gi|30039645|gb|AAP12534.1| ubiquitin [Trichoplusia ni]
gi|38373984|gb|AAR19215.1| ubiquitin [Helicoverpa armigera]
gi|147886435|gb|ABQ52426.1| ubiqutin subunit 1, partial [Mus musculus]
gi|182341967|gb|ACB87373.1| ubiquitin [Haritalodes derogata]
gi|399227028|gb|AFP36380.1| ubiquitin [Spodoptera frugiperda]
gi|225316|prf||1212243A ubiquitin S1
gi|225318|prf||1212243C ubiquitin S3
gi|225324|prf||1212243J ubiquitin S7(2)
Length = 76
Score = 51.6 bits (122), Expect = 4e-04, Method: Composition-based stats.
Identities = 30/74 (40%), Positives = 44/74 (59%), Gaps = 3/74 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D K+ P QQ LI GK L+D TL+
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLS 57
Query: 61 DNKVSEDGFLVVML 74
D + ++ L ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|347966903|ref|XP_550846.3| AGAP001971-PA [Anopheles gambiae str. PEST]
gi|333469848|gb|EAL38503.3| AGAP001971-PA [Anopheles gambiae str. PEST]
Length = 1065
Score = 51.6 bits (122), Expect = 4e-04, Method: Composition-based stats.
Identities = 30/74 (40%), Positives = 44/74 (59%), Gaps = 3/74 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D K+ P QQ LI GK L+D TL+
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLS 57
Query: 61 DNKVSEDGFLVVML 74
D + ++ L ++L
Sbjct: 58 DYNIQKESTLHLVL 71
Score = 51.6 bits (122), Expect = 4e-04, Method: Composition-based stats.
Identities = 30/74 (40%), Positives = 44/74 (59%), Gaps = 3/74 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D K+ P QQ LI GK L+D TL+
Sbjct: 77 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLS 133
Query: 61 DNKVSEDGFLVVML 74
D + ++ L ++L
Sbjct: 134 DYNIQKESTLHLVL 147
Score = 51.6 bits (122), Expect = 4e-04, Method: Composition-based stats.
Identities = 30/74 (40%), Positives = 44/74 (59%), Gaps = 3/74 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D K+ P QQ LI GK L+D TL+
Sbjct: 153 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLS 209
Query: 61 DNKVSEDGFLVVML 74
D + ++ L ++L
Sbjct: 210 DYNIQKESTLHLVL 223
Score = 51.6 bits (122), Expect = 4e-04, Method: Composition-based stats.
Identities = 30/74 (40%), Positives = 44/74 (59%), Gaps = 3/74 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D K+ P QQ LI GK L+D TL+
Sbjct: 229 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLS 285
Query: 61 DNKVSEDGFLVVML 74
D + ++ L ++L
Sbjct: 286 DYNIQKESTLHLVL 299
Score = 51.6 bits (122), Expect = 4e-04, Method: Composition-based stats.
Identities = 30/74 (40%), Positives = 44/74 (59%), Gaps = 3/74 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D K+ P QQ LI GK L+D TL+
Sbjct: 305 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLS 361
Query: 61 DNKVSEDGFLVVML 74
D + ++ L ++L
Sbjct: 362 DYNIQKESTLHLVL 375
Score = 51.6 bits (122), Expect = 4e-04, Method: Composition-based stats.
Identities = 30/74 (40%), Positives = 44/74 (59%), Gaps = 3/74 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D K+ P QQ LI GK L+D TL+
Sbjct: 381 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLS 437
Query: 61 DNKVSEDGFLVVML 74
D + ++ L ++L
Sbjct: 438 DYNIQKESTLHLVL 451
Score = 51.6 bits (122), Expect = 4e-04, Method: Composition-based stats.
Identities = 30/74 (40%), Positives = 44/74 (59%), Gaps = 3/74 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D K+ P QQ LI GK L+D TL+
Sbjct: 457 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLS 513
Query: 61 DNKVSEDGFLVVML 74
D + ++ L ++L
Sbjct: 514 DYNIQKESTLHLVL 527
Score = 51.6 bits (122), Expect = 4e-04, Method: Composition-based stats.
Identities = 30/74 (40%), Positives = 44/74 (59%), Gaps = 3/74 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D K+ P QQ LI GK L+D TL+
Sbjct: 533 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLS 589
Query: 61 DNKVSEDGFLVVML 74
D + ++ L ++L
Sbjct: 590 DYNIQKESTLHLVL 603
Score = 51.6 bits (122), Expect = 4e-04, Method: Composition-based stats.
Identities = 30/74 (40%), Positives = 44/74 (59%), Gaps = 3/74 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D K+ P QQ LI GK L+D TL+
Sbjct: 609 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLS 665
Query: 61 DNKVSEDGFLVVML 74
D + ++ L ++L
Sbjct: 666 DYNIQKESTLHLVL 679
Score = 51.6 bits (122), Expect = 4e-04, Method: Composition-based stats.
Identities = 30/74 (40%), Positives = 44/74 (59%), Gaps = 3/74 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D K+ P QQ LI GK L+D TL+
Sbjct: 685 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLS 741
Query: 61 DNKVSEDGFLVVML 74
D + ++ L ++L
Sbjct: 742 DYNIQKESTLHLVL 755
Score = 51.6 bits (122), Expect = 4e-04, Method: Composition-based stats.
Identities = 30/74 (40%), Positives = 44/74 (59%), Gaps = 3/74 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D K+ P QQ LI GK L+D TL+
Sbjct: 761 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLS 817
Query: 61 DNKVSEDGFLVVML 74
D + ++ L ++L
Sbjct: 818 DYNIQKESTLHLVL 831
Score = 51.6 bits (122), Expect = 4e-04, Method: Composition-based stats.
Identities = 30/74 (40%), Positives = 44/74 (59%), Gaps = 3/74 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D K+ P QQ LI GK L+D TL+
Sbjct: 837 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLS 893
Query: 61 DNKVSEDGFLVVML 74
D + ++ L ++L
Sbjct: 894 DYNIQKESTLHLVL 907
Score = 51.6 bits (122), Expect = 4e-04, Method: Composition-based stats.
Identities = 30/74 (40%), Positives = 44/74 (59%), Gaps = 3/74 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D K+ P QQ LI GK L+D TL+
Sbjct: 913 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLS 969
Query: 61 DNKVSEDGFLVVML 74
D + ++ L ++L
Sbjct: 970 DYNIQKESTLHLVL 983
Score = 51.6 bits (122), Expect = 4e-04, Method: Composition-based stats.
Identities = 30/74 (40%), Positives = 44/74 (59%), Gaps = 3/74 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D K+ P QQ LI GK L+D TL+
Sbjct: 989 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLS 1045
Query: 61 DNKVSEDGFLVVML 74
D + ++ L ++L
Sbjct: 1046 DYNIQKESTLHLVL 1059
>gi|195125345|ref|XP_002007139.1| GI12770 [Drosophila mojavensis]
gi|193918748|gb|EDW17615.1| GI12770 [Drosophila mojavensis]
Length = 991
Score = 51.6 bits (122), Expect = 4e-04, Method: Composition-based stats.
Identities = 30/74 (40%), Positives = 44/74 (59%), Gaps = 3/74 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D K+ P QQ LI GK L+D TL+
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLS 57
Query: 61 DNKVSEDGFLVVML 74
D + ++ L ++L
Sbjct: 58 DYNIQKESTLHLVL 71
Score = 51.6 bits (122), Expect = 4e-04, Method: Composition-based stats.
Identities = 30/74 (40%), Positives = 44/74 (59%), Gaps = 3/74 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D K+ P QQ LI GK L+D TL+
Sbjct: 77 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLS 133
Query: 61 DNKVSEDGFLVVML 74
D + ++ L ++L
Sbjct: 134 DYNIQKESTLHLVL 147
Score = 51.6 bits (122), Expect = 4e-04, Method: Composition-based stats.
Identities = 30/74 (40%), Positives = 44/74 (59%), Gaps = 3/74 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D K+ P QQ LI GK L+D TL+
Sbjct: 153 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLS 209
Query: 61 DNKVSEDGFLVVML 74
D + ++ L ++L
Sbjct: 210 DYNIQKESTLHLVL 223
Score = 51.6 bits (122), Expect = 4e-04, Method: Composition-based stats.
Identities = 30/74 (40%), Positives = 44/74 (59%), Gaps = 3/74 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D K+ P QQ LI GK L+D TL+
Sbjct: 229 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLS 285
Query: 61 DNKVSEDGFLVVML 74
D + ++ L ++L
Sbjct: 286 DYNIQKESTLHLVL 299
Score = 51.6 bits (122), Expect = 4e-04, Method: Composition-based stats.
Identities = 30/74 (40%), Positives = 44/74 (59%), Gaps = 3/74 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D K+ P QQ LI GK L+D TL+
Sbjct: 305 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLS 361
Query: 61 DNKVSEDGFLVVML 74
D + ++ L ++L
Sbjct: 362 DYNIQKESTLHLVL 375
Score = 51.6 bits (122), Expect = 4e-04, Method: Composition-based stats.
Identities = 30/74 (40%), Positives = 44/74 (59%), Gaps = 3/74 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D K+ P QQ LI GK L+D TL+
Sbjct: 381 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLS 437
Query: 61 DNKVSEDGFLVVML 74
D + ++ L ++L
Sbjct: 438 DYNIQKESTLHLVL 451
Score = 51.6 bits (122), Expect = 4e-04, Method: Composition-based stats.
Identities = 30/74 (40%), Positives = 44/74 (59%), Gaps = 3/74 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D K+ P QQ LI GK L+D TL+
Sbjct: 457 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLS 513
Query: 61 DNKVSEDGFLVVML 74
D + ++ L ++L
Sbjct: 514 DYNIQKESTLHLVL 527
Score = 51.6 bits (122), Expect = 4e-04, Method: Composition-based stats.
Identities = 30/74 (40%), Positives = 44/74 (59%), Gaps = 3/74 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D K+ P QQ LI GK L+D TL+
Sbjct: 533 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLS 589
Query: 61 DNKVSEDGFLVVML 74
D + ++ L ++L
Sbjct: 590 DYNIQKESTLHLVL 603
Score = 51.6 bits (122), Expect = 4e-04, Method: Composition-based stats.
Identities = 30/74 (40%), Positives = 44/74 (59%), Gaps = 3/74 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D K+ P QQ LI GK L+D TL+
Sbjct: 609 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLS 665
Query: 61 DNKVSEDGFLVVML 74
D + ++ L ++L
Sbjct: 666 DYNIQKESTLHLVL 679
Score = 51.6 bits (122), Expect = 4e-04, Method: Composition-based stats.
Identities = 30/74 (40%), Positives = 44/74 (59%), Gaps = 3/74 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D K+ P QQ LI GK L+D TL+
Sbjct: 685 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLS 741
Query: 61 DNKVSEDGFLVVML 74
D + ++ L ++L
Sbjct: 742 DYNIQKESTLHLVL 755
Score = 51.6 bits (122), Expect = 4e-04, Method: Composition-based stats.
Identities = 30/74 (40%), Positives = 44/74 (59%), Gaps = 3/74 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D K+ P QQ LI GK L+D TL+
Sbjct: 761 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLS 817
Query: 61 DNKVSEDGFLVVML 74
D + ++ L ++L
Sbjct: 818 DYNIQKESTLHLVL 831
Score = 51.6 bits (122), Expect = 4e-04, Method: Composition-based stats.
Identities = 30/74 (40%), Positives = 44/74 (59%), Gaps = 3/74 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D K+ P QQ LI GK L+D TL+
Sbjct: 837 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLS 893
Query: 61 DNKVSEDGFLVVML 74
D + ++ L ++L
Sbjct: 894 DYNIQKESTLHLVL 907
Score = 51.6 bits (122), Expect = 4e-04, Method: Composition-based stats.
Identities = 30/74 (40%), Positives = 44/74 (59%), Gaps = 3/74 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D K+ P QQ LI GK L+D TL+
Sbjct: 913 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLS 969
Query: 61 DNKVSEDGFLVVML 74
D + ++ L ++L
Sbjct: 970 DYNIQKESTLHLVL 983
>gi|170034793|ref|XP_001845257.1| conserved hypothetical protein [Culex quinquefasciatus]
gi|167876387|gb|EDS39770.1| conserved hypothetical protein [Culex quinquefasciatus]
Length = 1065
Score = 51.6 bits (122), Expect = 4e-04, Method: Composition-based stats.
Identities = 30/74 (40%), Positives = 44/74 (59%), Gaps = 3/74 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D K+ P QQ LI GK L+D TL+
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLS 57
Query: 61 DNKVSEDGFLVVML 74
D + ++ L ++L
Sbjct: 58 DYNIQKESTLHLVL 71
Score = 51.6 bits (122), Expect = 4e-04, Method: Composition-based stats.
Identities = 30/74 (40%), Positives = 44/74 (59%), Gaps = 3/74 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D K+ P QQ LI GK L+D TL+
Sbjct: 77 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLS 133
Query: 61 DNKVSEDGFLVVML 74
D + ++ L ++L
Sbjct: 134 DYNIQKESTLHLVL 147
Score = 51.6 bits (122), Expect = 4e-04, Method: Composition-based stats.
Identities = 30/74 (40%), Positives = 44/74 (59%), Gaps = 3/74 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D K+ P QQ LI GK L+D TL+
Sbjct: 153 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLS 209
Query: 61 DNKVSEDGFLVVML 74
D + ++ L ++L
Sbjct: 210 DYNIQKESTLHLVL 223
Score = 51.6 bits (122), Expect = 4e-04, Method: Composition-based stats.
Identities = 30/74 (40%), Positives = 44/74 (59%), Gaps = 3/74 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D K+ P QQ LI GK L+D TL+
Sbjct: 229 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLS 285
Query: 61 DNKVSEDGFLVVML 74
D + ++ L ++L
Sbjct: 286 DYNIQKESTLHLVL 299
Score = 51.6 bits (122), Expect = 4e-04, Method: Composition-based stats.
Identities = 30/74 (40%), Positives = 44/74 (59%), Gaps = 3/74 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D K+ P QQ LI GK L+D TL+
Sbjct: 305 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLS 361
Query: 61 DNKVSEDGFLVVML 74
D + ++ L ++L
Sbjct: 362 DYNIQKESTLHLVL 375
Score = 51.6 bits (122), Expect = 4e-04, Method: Composition-based stats.
Identities = 30/74 (40%), Positives = 44/74 (59%), Gaps = 3/74 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D K+ P QQ LI GK L+D TL+
Sbjct: 381 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLS 437
Query: 61 DNKVSEDGFLVVML 74
D + ++ L ++L
Sbjct: 438 DYNIQKESTLHLVL 451
Score = 51.6 bits (122), Expect = 4e-04, Method: Composition-based stats.
Identities = 30/74 (40%), Positives = 44/74 (59%), Gaps = 3/74 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D K+ P QQ LI GK L+D TL+
Sbjct: 457 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLS 513
Query: 61 DNKVSEDGFLVVML 74
D + ++ L ++L
Sbjct: 514 DYNIQKESTLHLVL 527
Score = 51.6 bits (122), Expect = 4e-04, Method: Composition-based stats.
Identities = 30/74 (40%), Positives = 44/74 (59%), Gaps = 3/74 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D K+ P QQ LI GK L+D TL+
Sbjct: 533 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLS 589
Query: 61 DNKVSEDGFLVVML 74
D + ++ L ++L
Sbjct: 590 DYNIQKESTLHLVL 603
Score = 51.6 bits (122), Expect = 4e-04, Method: Composition-based stats.
Identities = 30/74 (40%), Positives = 44/74 (59%), Gaps = 3/74 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D K+ P QQ LI GK L+D TL+
Sbjct: 609 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLS 665
Query: 61 DNKVSEDGFLVVML 74
D + ++ L ++L
Sbjct: 666 DYNIQKESTLHLVL 679
Score = 51.6 bits (122), Expect = 4e-04, Method: Composition-based stats.
Identities = 30/74 (40%), Positives = 44/74 (59%), Gaps = 3/74 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D K+ P QQ LI GK L+D TL+
Sbjct: 685 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLS 741
Query: 61 DNKVSEDGFLVVML 74
D + ++ L ++L
Sbjct: 742 DYNIQKESTLHLVL 755
Score = 51.6 bits (122), Expect = 4e-04, Method: Composition-based stats.
Identities = 30/74 (40%), Positives = 44/74 (59%), Gaps = 3/74 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D K+ P QQ LI GK L+D TL+
Sbjct: 761 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLS 817
Query: 61 DNKVSEDGFLVVML 74
D + ++ L ++L
Sbjct: 818 DYNIQKESTLHLVL 831
Score = 51.6 bits (122), Expect = 4e-04, Method: Composition-based stats.
Identities = 30/74 (40%), Positives = 44/74 (59%), Gaps = 3/74 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D K+ P QQ LI GK L+D TL+
Sbjct: 837 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLS 893
Query: 61 DNKVSEDGFLVVML 74
D + ++ L ++L
Sbjct: 894 DYNIQKESTLHLVL 907
Score = 51.6 bits (122), Expect = 4e-04, Method: Composition-based stats.
Identities = 30/74 (40%), Positives = 44/74 (59%), Gaps = 3/74 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D K+ P QQ LI GK L+D TL+
Sbjct: 913 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLS 969
Query: 61 DNKVSEDGFLVVML 74
D + ++ L ++L
Sbjct: 970 DYNIQKESTLHLVL 983
Score = 51.6 bits (122), Expect = 4e-04, Method: Composition-based stats.
Identities = 30/74 (40%), Positives = 44/74 (59%), Gaps = 3/74 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D K+ P QQ LI GK L+D TL+
Sbjct: 989 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLS 1045
Query: 61 DNKVSEDGFLVVML 74
D + ++ L ++L
Sbjct: 1046 DYNIQKESTLHLVL 1059
>gi|21429768|gb|AAM50562.1| AT20865p [Drosophila melanogaster]
Length = 1067
Score = 51.6 bits (122), Expect = 4e-04, Method: Composition-based stats.
Identities = 30/74 (40%), Positives = 44/74 (59%), Gaps = 3/74 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D K+ P QQ LI GK L+D TL+
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLS 57
Query: 61 DNKVSEDGFLVVML 74
D + ++ L ++L
Sbjct: 58 DYNIQKESTLHLVL 71
Score = 51.6 bits (122), Expect = 4e-04, Method: Composition-based stats.
Identities = 30/74 (40%), Positives = 44/74 (59%), Gaps = 3/74 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D K+ P QQ LI GK L+D TL+
Sbjct: 77 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLS 133
Query: 61 DNKVSEDGFLVVML 74
D + ++ L ++L
Sbjct: 134 DYNIQKESTLHLVL 147
Score = 51.6 bits (122), Expect = 4e-04, Method: Composition-based stats.
Identities = 30/74 (40%), Positives = 44/74 (59%), Gaps = 3/74 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D K+ P QQ LI GK L+D TL+
Sbjct: 153 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLS 209
Query: 61 DNKVSEDGFLVVML 74
D + ++ L ++L
Sbjct: 210 DYNIQKESTLHLVL 223
Score = 51.6 bits (122), Expect = 4e-04, Method: Composition-based stats.
Identities = 30/74 (40%), Positives = 44/74 (59%), Gaps = 3/74 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D K+ P QQ LI GK L+D TL+
Sbjct: 229 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLS 285
Query: 61 DNKVSEDGFLVVML 74
D + ++ L ++L
Sbjct: 286 DYNIQKESTLHLVL 299
Score = 51.6 bits (122), Expect = 4e-04, Method: Composition-based stats.
Identities = 30/74 (40%), Positives = 44/74 (59%), Gaps = 3/74 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D K+ P QQ LI GK L+D TL+
Sbjct: 305 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLS 361
Query: 61 DNKVSEDGFLVVML 74
D + ++ L ++L
Sbjct: 362 DYNIQKESTLHLVL 375
Score = 51.6 bits (122), Expect = 4e-04, Method: Composition-based stats.
Identities = 30/74 (40%), Positives = 44/74 (59%), Gaps = 3/74 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D K+ P QQ LI GK L+D TL+
Sbjct: 381 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLS 437
Query: 61 DNKVSEDGFLVVML 74
D + ++ L ++L
Sbjct: 438 DYNIQKESTLHLVL 451
Score = 51.6 bits (122), Expect = 4e-04, Method: Composition-based stats.
Identities = 30/74 (40%), Positives = 44/74 (59%), Gaps = 3/74 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D K+ P QQ LI GK L+D TL+
Sbjct: 457 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLS 513
Query: 61 DNKVSEDGFLVVML 74
D + ++ L ++L
Sbjct: 514 DYNIQKESTLHLVL 527
Score = 51.6 bits (122), Expect = 4e-04, Method: Composition-based stats.
Identities = 30/74 (40%), Positives = 44/74 (59%), Gaps = 3/74 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D K+ P QQ LI GK L+D TL+
Sbjct: 533 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLS 589
Query: 61 DNKVSEDGFLVVML 74
D + ++ L ++L
Sbjct: 590 DYNIQKESTLHLVL 603
Score = 51.6 bits (122), Expect = 4e-04, Method: Composition-based stats.
Identities = 30/74 (40%), Positives = 44/74 (59%), Gaps = 3/74 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D K+ P QQ LI GK L+D TL+
Sbjct: 609 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLS 665
Query: 61 DNKVSEDGFLVVML 74
D + ++ L ++L
Sbjct: 666 DYNIQKESTLHLVL 679
Score = 51.6 bits (122), Expect = 4e-04, Method: Composition-based stats.
Identities = 30/74 (40%), Positives = 44/74 (59%), Gaps = 3/74 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D K+ P QQ LI GK L+D TL+
Sbjct: 685 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLS 741
Query: 61 DNKVSEDGFLVVML 74
D + ++ L ++L
Sbjct: 742 DYNIQKESTLHLVL 755
Score = 51.6 bits (122), Expect = 4e-04, Method: Composition-based stats.
Identities = 30/74 (40%), Positives = 44/74 (59%), Gaps = 3/74 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D K+ P QQ LI GK L+D TL+
Sbjct: 761 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLS 817
Query: 61 DNKVSEDGFLVVML 74
D + ++ L ++L
Sbjct: 818 DYNIQKESTLHLVL 831
Score = 51.6 bits (122), Expect = 4e-04, Method: Composition-based stats.
Identities = 30/74 (40%), Positives = 44/74 (59%), Gaps = 3/74 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D K+ P QQ LI GK L+D TL+
Sbjct: 837 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLS 893
Query: 61 DNKVSEDGFLVVML 74
D + ++ L ++L
Sbjct: 894 DYNIQKESTLHLVL 907
Score = 51.6 bits (122), Expect = 4e-04, Method: Composition-based stats.
Identities = 30/74 (40%), Positives = 44/74 (59%), Gaps = 3/74 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D K+ P QQ LI GK L+D TL+
Sbjct: 913 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLS 969
Query: 61 DNKVSEDGFLVVML 74
D + ++ L ++L
Sbjct: 970 DYNIQKESTLHLVL 983
Score = 51.6 bits (122), Expect = 4e-04, Method: Composition-based stats.
Identities = 30/74 (40%), Positives = 44/74 (59%), Gaps = 3/74 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D K+ P QQ LI GK L+D TL+
Sbjct: 989 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLS 1045
Query: 61 DNKVSEDGFLVVML 74
D + ++ L ++L
Sbjct: 1046 DYNIQKESTLHLVL 1059
>gi|5523967|gb|AAD44036.1|AF104019_1 polyprotein [Bovine viral diarrhea virus 2]
Length = 344
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 44/75 (58%), Gaps = 3/75 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D K+ P QQ LI GK L+D TL+
Sbjct: 212 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLS 268
Query: 61 DNKVSEDGFLVVMLS 75
D + ++ L ++L
Sbjct: 269 DYNIQKESTLHLVLR 283
>gi|327358639|gb|AEA51166.1| ubiquitin and ribosomal protein S27a precursor, partial [Oryzias
melastigma]
Length = 116
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 34/95 (35%), Positives = 51/95 (53%), Gaps = 7/95 (7%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D K+ P QQ LI GK L+D TL+
Sbjct: 22 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLS 78
Query: 61 DNKVSEDGFLVVMLSKSKTLGSAGASSAQPAHTTP 95
D + ++ L ++L L + ++TTP
Sbjct: 79 DYNIQKESTLHLVLR----LRGGAKKRKKKSYTTP 109
>gi|96979909|ref|YP_611089.1| ubiquitin [Antheraea pernyi nucleopolyhedrovirus]
gi|54778776|gb|AAV39609.1| ubiquitin [Antheraea pernyi nucleopolyhedrovirus]
gi|94983442|gb|ABF50382.1| ubiquitin [Antheraea pernyi nucleopolyhedrovirus]
gi|146229787|gb|ABQ12352.1| ubiquitin like protein [Antheraea pernyi nucleopolyhedrovirus]
gi|427379004|gb|AFY62922.1| ubiqutin [Philosamia cynthia ricini nucleopolyhedrovirus virus]
Length = 76
Score = 51.6 bits (122), Expect = 4e-04, Method: Composition-based stats.
Identities = 29/74 (39%), Positives = 43/74 (58%), Gaps = 3/74 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + +P DTV VK+ I D K+ P QQ LI+ GK L+D T+A
Sbjct: 1 MQIFVKTLTGKTITVETEPGDTVGQVKQQIAD---KEGVPVDQQRLIYAGKQLEDAKTMA 57
Query: 61 DNKVSEDGFLVVML 74
D + ++ L ++L
Sbjct: 58 DYNIQKESTLHMVL 71
>gi|323208|gb|AAA42855.1| nonstructural protein; putative helicase/protease; contains
duplication; contains ubiquitin-coding region; putative,
partial [Bovine viral diarrhea virus 1]
Length = 1896
Score = 51.6 bits (122), Expect = 4e-04, Method: Composition-based stats.
Identities = 30/74 (40%), Positives = 44/74 (59%), Gaps = 3/74 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D K+ P QQ LI GK L+D TL+
Sbjct: 990 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLS 1046
Query: 61 DNKVSEDGFLVVML 74
D + ++ L ++L
Sbjct: 1047 DYNIQKESTLHLVL 1060
>gi|85719967|gb|ABC75552.1| ubiquitin and ribosomal protein S27a precursor [Ictalurus
punctatus]
Length = 114
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 34/95 (35%), Positives = 51/95 (53%), Gaps = 7/95 (7%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D K+ P QQ LI GK L+D TL+
Sbjct: 11 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLS 67
Query: 61 DNKVSEDGFLVVMLSKSKTLGSAGASSAQPAHTTP 95
D + ++ L ++L L + ++TTP
Sbjct: 68 DYNIQKESTLHLVLR----LRGGAKKRKKKSYTTP 98
>gi|9837286|gb|AAG00513.1|AF285162_1 polyubiquitin C [Mus musculus]
Length = 886
Score = 51.6 bits (122), Expect = 4e-04, Method: Composition-based stats.
Identities = 30/74 (40%), Positives = 44/74 (59%), Gaps = 3/74 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D K+ P QQ LI GK L+D TL+
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLS 57
Query: 61 DNKVSEDGFLVVML 74
D + ++ L ++L
Sbjct: 58 DYNIQKESTLHLVL 71
Score = 51.6 bits (122), Expect = 4e-04, Method: Composition-based stats.
Identities = 30/74 (40%), Positives = 44/74 (59%), Gaps = 3/74 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D K+ P QQ LI GK L+D TL+
Sbjct: 77 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLS 133
Query: 61 DNKVSEDGFLVVML 74
D + ++ L ++L
Sbjct: 134 DYNIQKESTLHLVL 147
Score = 51.6 bits (122), Expect = 4e-04, Method: Composition-based stats.
Identities = 30/74 (40%), Positives = 44/74 (59%), Gaps = 3/74 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D K+ P QQ LI GK L+D TL+
Sbjct: 229 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLS 285
Query: 61 DNKVSEDGFLVVML 74
D + ++ L ++L
Sbjct: 286 DYNIQKESTLHLVL 299
Score = 51.6 bits (122), Expect = 4e-04, Method: Composition-based stats.
Identities = 30/74 (40%), Positives = 44/74 (59%), Gaps = 3/74 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D K+ P QQ LI GK L+D TL+
Sbjct: 305 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLS 361
Query: 61 DNKVSEDGFLVVML 74
D + ++ L ++L
Sbjct: 362 DYNIQKESTLHLVL 375
Score = 51.6 bits (122), Expect = 4e-04, Method: Composition-based stats.
Identities = 30/74 (40%), Positives = 44/74 (59%), Gaps = 3/74 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D K+ P QQ LI GK L+D TL+
Sbjct: 457 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLS 513
Query: 61 DNKVSEDGFLVVML 74
D + ++ L ++L
Sbjct: 514 DYNIQKESTLHLVL 527
Score = 51.6 bits (122), Expect = 4e-04, Method: Composition-based stats.
Identities = 30/74 (40%), Positives = 44/74 (59%), Gaps = 3/74 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D K+ P QQ LI GK L+D TL+
Sbjct: 533 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLS 589
Query: 61 DNKVSEDGFLVVML 74
D + ++ L ++L
Sbjct: 590 DYNIQKESTLHLVL 603
Score = 51.6 bits (122), Expect = 4e-04, Method: Composition-based stats.
Identities = 30/74 (40%), Positives = 44/74 (59%), Gaps = 3/74 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D K+ P QQ LI GK L+D TL+
Sbjct: 609 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLS 665
Query: 61 DNKVSEDGFLVVML 74
D + ++ L ++L
Sbjct: 666 DYNIQKESTLHLVL 679
Score = 51.6 bits (122), Expect = 4e-04, Method: Composition-based stats.
Identities = 30/74 (40%), Positives = 44/74 (59%), Gaps = 3/74 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D K+ P QQ LI GK L+D TL+
Sbjct: 685 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLS 741
Query: 61 DNKVSEDGFLVVML 74
D + ++ L ++L
Sbjct: 742 DYNIQKESTLHLVL 755
Score = 51.6 bits (122), Expect = 4e-04, Method: Composition-based stats.
Identities = 30/74 (40%), Positives = 44/74 (59%), Gaps = 3/74 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D K+ P QQ LI GK L+D TL+
Sbjct: 761 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLS 817
Query: 61 DNKVSEDGFLVVML 74
D + ++ L ++L
Sbjct: 818 DYNIQKESTLHLVL 831
Score = 48.5 bits (114), Expect = 0.003, Method: Composition-based stats.
Identities = 29/74 (39%), Positives = 43/74 (58%), Gaps = 3/74 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D K+ P QQ LI GK L+ TL+
Sbjct: 153 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQD---KEGIPPDQQRLIFAGKQLEGGRTLS 209
Query: 61 DNKVSEDGFLVVML 74
D + ++ L ++L
Sbjct: 210 DYNIQKESTLHLVL 223
Score = 48.1 bits (113), Expect = 0.004, Method: Composition-based stats.
Identities = 29/74 (39%), Positives = 43/74 (58%), Gaps = 3/74 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D K+ QQ LI GK L+D TL+
Sbjct: 381 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQD---KEGISPDQQRLIFAGKQLEDGRTLS 437
Query: 61 DNKVSEDGFLVVML 74
D + ++ L ++L
Sbjct: 438 DYNIQKESTLHLVL 451
>gi|289526477|pdb|2KHW|B Chain B, Solution Structure Of The Human Polymerase Iota Ubm2-
Ubiquitin Complex
gi|306440517|pdb|3K9P|B Chain B, The Crystal Structure Of E2-25k And Ubiquitin Complex
gi|313754429|pdb|3OJ3|A Chain A, Crystal Structure Of The A20 Znf4 And Ubiquitin Complex
gi|313754430|pdb|3OJ3|B Chain B, Crystal Structure Of The A20 Znf4 And Ubiquitin Complex
gi|313754431|pdb|3OJ3|C Chain C, Crystal Structure Of The A20 Znf4 And Ubiquitin Complex
gi|313754432|pdb|3OJ3|D Chain D, Crystal Structure Of The A20 Znf4 And Ubiquitin Complex
gi|313754433|pdb|3OJ3|E Chain E, Crystal Structure Of The A20 Znf4 And Ubiquitin Complex
gi|313754434|pdb|3OJ3|F Chain F, Crystal Structure Of The A20 Znf4 And Ubiquitin Complex
gi|313754435|pdb|3OJ3|G Chain G, Crystal Structure Of The A20 Znf4 And Ubiquitin Complex
gi|313754436|pdb|3OJ3|H Chain H, Crystal Structure Of The A20 Znf4 And Ubiquitin Complex
gi|313754446|pdb|3OJ4|B Chain B, Crystal Structure Of The A20 Znf4, Ubiquitin And Ubch5a
Complex
gi|313754449|pdb|3OJ4|E Chain E, Crystal Structure Of The A20 Znf4, Ubiquitin And Ubch5a
Complex
gi|332639783|pdb|3PTF|C Chain C, X-Ray Structure Of The Non-Covalent Complex Between
Ubch5a And Ubiquitin
gi|332639784|pdb|3PTF|D Chain D, X-Ray Structure Of The Non-Covalent Complex Between
Ubch5a And Ubiquitin
Length = 79
Score = 51.6 bits (122), Expect = 4e-04, Method: Composition-based stats.
Identities = 30/74 (40%), Positives = 44/74 (59%), Gaps = 3/74 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D K+ P QQ LI GK L+D TL+
Sbjct: 4 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLS 60
Query: 61 DNKVSEDGFLVVML 74
D + ++ L ++L
Sbjct: 61 DYNIQKESTLHLVL 74
>gi|427782533|gb|JAA56718.1| Putative neural precursor cell [Rhipicephalus pulchellus]
Length = 79
Score = 51.6 bits (122), Expect = 4e-04, Method: Composition-based stats.
Identities = 28/75 (37%), Positives = 44/75 (58%), Gaps = 3/75 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M + VKTL G EI ++P+D V +K+ +E+ K+ P QQ LI++GK + DE T
Sbjct: 1 MLIKVKTLTGKEIEIDIEPNDKVERIKERVEE---KEGIPPAQQRLIYSGKQMNDEKTAT 57
Query: 61 DNKVSEDGFLVVMLS 75
+ KV L ++L+
Sbjct: 58 EYKVQGGSVLHLVLA 72
>gi|2627131|dbj|BAA23487.1| polyubiquitin [Cricetulus griseus]
Length = 886
Score = 51.6 bits (122), Expect = 4e-04, Method: Composition-based stats.
Identities = 30/74 (40%), Positives = 44/74 (59%), Gaps = 3/74 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D K+ P QQ LI GK L+D TL+
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLS 57
Query: 61 DNKVSEDGFLVVML 74
D + ++ L ++L
Sbjct: 58 DYNIQKESTLHLVL 71
Score = 51.6 bits (122), Expect = 4e-04, Method: Composition-based stats.
Identities = 30/74 (40%), Positives = 44/74 (59%), Gaps = 3/74 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D K+ P QQ LI GK L+D TL+
Sbjct: 77 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLS 133
Query: 61 DNKVSEDGFLVVML 74
D + ++ L ++L
Sbjct: 134 DYNIQKESTLHLVL 147
Score = 51.6 bits (122), Expect = 4e-04, Method: Composition-based stats.
Identities = 30/74 (40%), Positives = 44/74 (59%), Gaps = 3/74 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D K+ P QQ LI GK L+D TL+
Sbjct: 153 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLS 209
Query: 61 DNKVSEDGFLVVML 74
D + ++ L ++L
Sbjct: 210 DYNIQKESTLHLVL 223
Score = 51.6 bits (122), Expect = 4e-04, Method: Composition-based stats.
Identities = 30/74 (40%), Positives = 44/74 (59%), Gaps = 3/74 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D K+ P QQ LI GK L+D TL+
Sbjct: 229 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLS 285
Query: 61 DNKVSEDGFLVVML 74
D + ++ L ++L
Sbjct: 286 DYNIQKESTLHLVL 299
Score = 51.6 bits (122), Expect = 4e-04, Method: Composition-based stats.
Identities = 30/74 (40%), Positives = 44/74 (59%), Gaps = 3/74 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D K+ P QQ LI GK L+D TL+
Sbjct: 305 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLS 361
Query: 61 DNKVSEDGFLVVML 74
D + ++ L ++L
Sbjct: 362 DYNIQKESTLHLVL 375
Score = 51.6 bits (122), Expect = 4e-04, Method: Composition-based stats.
Identities = 30/74 (40%), Positives = 44/74 (59%), Gaps = 3/74 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D K+ P QQ LI GK L+D TL+
Sbjct: 381 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLS 437
Query: 61 DNKVSEDGFLVVML 74
D + ++ L ++L
Sbjct: 438 DYNIQKESTLHLVL 451
Score = 51.6 bits (122), Expect = 4e-04, Method: Composition-based stats.
Identities = 30/74 (40%), Positives = 44/74 (59%), Gaps = 3/74 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D K+ P QQ LI GK L+D TL+
Sbjct: 457 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLS 513
Query: 61 DNKVSEDGFLVVML 74
D + ++ L ++L
Sbjct: 514 DYNIQKESTLHLVL 527
Score = 51.6 bits (122), Expect = 4e-04, Method: Composition-based stats.
Identities = 30/74 (40%), Positives = 44/74 (59%), Gaps = 3/74 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D K+ P QQ LI GK L+D TL+
Sbjct: 533 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLS 589
Query: 61 DNKVSEDGFLVVML 74
D + ++ L ++L
Sbjct: 590 DYNIQKESTLHLVL 603
Score = 51.6 bits (122), Expect = 4e-04, Method: Composition-based stats.
Identities = 30/74 (40%), Positives = 44/74 (59%), Gaps = 3/74 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D K+ P QQ LI GK L+D TL+
Sbjct: 609 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLS 665
Query: 61 DNKVSEDGFLVVML 74
D + ++ L ++L
Sbjct: 666 DYNIQKESTLHLVL 679
Score = 51.6 bits (122), Expect = 4e-04, Method: Composition-based stats.
Identities = 30/74 (40%), Positives = 44/74 (59%), Gaps = 3/74 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D K+ P QQ LI GK L+D TL+
Sbjct: 685 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLS 741
Query: 61 DNKVSEDGFLVVML 74
D + ++ L ++L
Sbjct: 742 DYNIQKESTLHLVL 755
Score = 51.6 bits (122), Expect = 4e-04, Method: Composition-based stats.
Identities = 30/74 (40%), Positives = 44/74 (59%), Gaps = 3/74 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D K+ P QQ LI GK L+D TL+
Sbjct: 761 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLS 817
Query: 61 DNKVSEDGFLVVML 74
D + ++ L ++L
Sbjct: 818 DYNIQKESTLHLVL 831
>gi|385076|gb|AAA29064.1| ubiquitin [Echinococcus multilocularis]
Length = 76
Score = 51.6 bits (122), Expect = 4e-04, Method: Composition-based stats.
Identities = 29/74 (39%), Positives = 44/74 (59%), Gaps = 3/74 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSD++ VK I+D K+ P QQ LI GK L+D TL+
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDSIENVKAKIQD---KEGIPPDQQRLIFAGKQLEDRRTLS 57
Query: 61 DNKVSEDGFLVVML 74
D + ++ L ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|197725012|pdb|2ZNV|B Chain B, Crystal Structure Of Human Amsh-Lp Dub Domain In Complex
With Lys63-Linked Ubiquitin Dimer
gi|197725015|pdb|2ZNV|E Chain E, Crystal Structure Of Human Amsh-Lp Dub Domain In Complex
With Lys63-Linked Ubiquitin Dimer
gi|254574782|pdb|3A1Q|B Chain B, Crystal Structure Of The Mouse Rap80 Uims In Complex
With Lys63-Linked Di-Ubiquitin
gi|254574785|pdb|3A1Q|E Chain E, Crystal Structure Of The Mouse Rap80 Uims In Complex
With Lys63-Linked Di-Ubiquitin
gi|259090227|pdb|3H7P|A Chain A, Crystal Structure Of K63-Linked Di-Ubiquitin
gi|262118711|pdb|3JSV|A Chain A, Crystal Structure Of Mouse Nemo Cozi In Complex With
Lys63- Linked Di-Ubiquitin
gi|270346451|pdb|3A9J|A Chain A, Crystal Structure Of The Mouse Tab2-Nzf In Complex With
Lys63-Linked Di-Ubiquitin
gi|270346454|pdb|3A9K|A Chain A, Crystal Structure Of The Mouse Tab3-Nzf In Complex With
Lys63-Linked Di-Ubiquitin
gi|71040793|gb|AAZ20310.1| ubiquitin [Musca domestica]
Length = 76
Score = 51.6 bits (122), Expect = 4e-04, Method: Composition-based stats.
Identities = 30/74 (40%), Positives = 43/74 (58%), Gaps = 3/74 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D K+ P QQ LI GK L+D TL+
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLS 57
Query: 61 DNKVSEDGFLVVML 74
D + + L ++L
Sbjct: 58 DYNIQRESTLHLVL 71
>gi|5523987|gb|AAD44046.1|AF104029_1 polyprotein [Bovine viral diarrhea virus 2]
Length = 395
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 44/75 (58%), Gaps = 3/75 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D K+ P QQ LI GK L+D TL+
Sbjct: 263 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLS 319
Query: 61 DNKVSEDGFLVVMLS 75
D + ++ L ++L
Sbjct: 320 DYNIQKESTLHLVLR 334
>gi|208435645|pdb|3DVG|Y Chain Y, Crystal Structure Of K63-Specific Fab Apu.3a8 Bound To
K63-Linked Di- Ubiquitin
gi|208435649|pdb|3DVN|Y Chain Y, Crystal Structure Of K63-specific Fab Apu2.16 Bound To
K63-linked Di- Ubiquitin
gi|208435653|pdb|3DVN|V Chain V, Crystal Structure Of K63-specific Fab Apu2.16 Bound To
K63-linked Di- Ubiquitin
Length = 79
Score = 51.6 bits (122), Expect = 4e-04, Method: Composition-based stats.
Identities = 30/74 (40%), Positives = 43/74 (58%), Gaps = 3/74 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D K+ P QQ LI GK L+D TL+
Sbjct: 4 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLS 60
Query: 61 DNKVSEDGFLVVML 74
D + + L ++L
Sbjct: 61 DYNIQRESTLHLVL 74
>gi|195148677|ref|XP_002015294.1| GL19627 [Drosophila persimilis]
gi|198475019|ref|XP_001356894.2| GA10488 [Drosophila pseudoobscura pseudoobscura]
gi|194107247|gb|EDW29290.1| GL19627 [Drosophila persimilis]
gi|198138643|gb|EAL33960.2| GA10488 [Drosophila pseudoobscura pseudoobscura]
Length = 80
Score = 51.6 bits (122), Expect = 4e-04, Method: Composition-based stats.
Identities = 29/75 (38%), Positives = 44/75 (58%), Gaps = 3/75 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M + VKTL G EI ++P+D V +K+ +E+ K+ P QQ LI +GK + D+ T A
Sbjct: 1 MLIKVKTLTGKEIEIDIEPTDKVDRIKERVEE---KEGIPPQQQRLIFSGKQMNDDKTAA 57
Query: 61 DNKVSEDGFLVVMLS 75
D KV L ++L+
Sbjct: 58 DYKVQGGSVLHLVLA 72
>gi|223646272|gb|ACN09894.1| Ubiquitin [Salmo salar]
gi|223672119|gb|ACN12241.1| Ubiquitin [Salmo salar]
Length = 77
Score = 51.6 bits (122), Expect = 4e-04, Method: Composition-based stats.
Identities = 30/74 (40%), Positives = 44/74 (59%), Gaps = 3/74 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D K+ P QQ LI GK L+D TL+
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLS 57
Query: 61 DNKVSEDGFLVVML 74
D + ++ L ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|392332716|ref|XP_003752669.1| PREDICTED: ubiquitin-40S ribosomal protein S27a-like [Rattus
norvegicus]
gi|392352643|ref|XP_001053626.2| PREDICTED: ubiquitin-40S ribosomal protein S27a-like [Rattus
norvegicus]
Length = 90
Score = 51.6 bits (122), Expect = 4e-04, Method: Composition-based stats.
Identities = 30/74 (40%), Positives = 43/74 (58%), Gaps = 3/74 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D K+ P QQ LI GK L+D TL+
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIKNVKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLS 57
Query: 61 DNKVSEDGFLVVML 74
D + + L ++L
Sbjct: 58 DYNIQKKSTLHLVL 71
>gi|428168829|gb|EKX37769.1| high mobility group box fusion protein [Guillardia theta CCMP2712]
Length = 187
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 37/106 (34%), Positives = 52/106 (49%), Gaps = 8/106 (7%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+ SDT+ VK I+D K+ P QQ LI GK L+D TLA
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDMVKSKIQD---KEGIPPDQQRLIFAGKQLEDGRTLA 57
Query: 61 DNKVSEDGFLVVMLSKSKTLGSAGASSAQPAHTTPPTTAPSSNSTP 106
D + ++ L ++L GA + T P S+S P
Sbjct: 58 DYNIQKESTLHLVLR-----LRGGAEGREKRQTKPVEKFTISSSAP 98
>gi|312380774|gb|EFR26677.1| hypothetical protein AND_07080 [Anopheles darlingi]
Length = 567
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 44/74 (59%), Gaps = 3/74 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D K+ P QQ LI GK L+D TL+
Sbjct: 143 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLS 199
Query: 61 DNKVSEDGFLVVML 74
D + ++ L ++L
Sbjct: 200 DYNIQKESTLHLVL 213
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 44/74 (59%), Gaps = 3/74 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D K+ P QQ LI GK L+D TL+
Sbjct: 219 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLS 275
Query: 61 DNKVSEDGFLVVML 74
D + ++ L ++L
Sbjct: 276 DYNIQKESTLHLVL 289
Score = 38.9 bits (89), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 52/117 (44%), Gaps = 6/117 (5%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V P++TV+ +K IE+ +G D QQ +I GK L++ ++
Sbjct: 1 MQIFVKTLTGKTITLDVVPTETVLDIKSKIEEREGIDP---DQQRIIFAGKQLENGRIIS 57
Query: 61 DNKVSEDG--FLVVMLSKSKTLGSAGASSAQPA-HTTPPTTAPSSNSTPPQEASVPP 114
D + LV+ L + + A T P T S + +PP
Sbjct: 58 DYNIQHGSTMHLVLRLKGGMQIFVRMLTGKTIAIDTEPEATVESVKKQIDEREEIPP 114
>gi|290560476|pdb|3LDZ|F Chain F, Crystal Structure Of Human Stam1 Vhs Domain In Complex
With Ubiquitin
gi|290560481|pdb|3LDZ|E Chain E, Crystal Structure Of Human Stam1 Vhs Domain In Complex
With Ubiquitin
gi|290560482|pdb|3LDZ|G Chain G, Crystal Structure Of Human Stam1 Vhs Domain In Complex
With Ubiquitin
Length = 73
Score = 51.6 bits (122), Expect = 4e-04, Method: Composition-based stats.
Identities = 30/74 (40%), Positives = 44/74 (59%), Gaps = 3/74 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D K+ P QQ LI GK L+D TL+
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLS 57
Query: 61 DNKVSEDGFLVVML 74
D + ++ L ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|195491526|ref|XP_002093598.1| GE20668 [Drosophila yakuba]
gi|194179699|gb|EDW93310.1| GE20668 [Drosophila yakuba]
Length = 79
Score = 51.6 bits (122), Expect = 4e-04, Method: Composition-based stats.
Identities = 30/74 (40%), Positives = 44/74 (59%), Gaps = 3/74 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D K+ P QQ LI GK L+D TL+
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLS 57
Query: 61 DNKVSEDGFLVVML 74
D + ++ L ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|154416813|ref|XP_001581428.1| polyubiquitin [Trichomonas vaginalis G3]
gi|121915655|gb|EAY20442.1| polyubiquitin, putative [Trichomonas vaginalis G3]
Length = 147
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 43/75 (57%), Gaps = 3/75 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G H + V+P+D + VK I+D K+ P QQ LI GK L+D TL
Sbjct: 1 MQIFVKTLTGKHITLEVEPTDRIEDVKAKIQD---KEGIPPDQQRLIFAGKQLEDGNTLQ 57
Query: 61 DNKVSEDGFLVVMLS 75
D + +D L ++L
Sbjct: 58 DYSIQKDSTLHLVLR 72
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/70 (41%), Positives = 40/70 (57%), Gaps = 3/70 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G H + V+P+D + VK I+D K+ P QQ LI GK L+D TL
Sbjct: 77 MQIFVKTLTGKHITLEVEPTDRIEDVKAKIQD---KEGIPPDQQRLIFAGKQLEDGNTLQ 133
Query: 61 DNKVSEDGFL 70
D + +D L
Sbjct: 134 DYSIQKDSIL 143
>gi|400261189|pdb|4AP4|C Chain C, Rnf4 - Ubch5a - Ubiquitin Heterotrimeric Complex
gi|400261191|pdb|4AP4|F Chain F, Rnf4 - Ubch5a - Ubiquitin Heterotrimeric Complex
Length = 80
Score = 51.6 bits (122), Expect = 4e-04, Method: Composition-based stats.
Identities = 30/74 (40%), Positives = 44/74 (59%), Gaps = 3/74 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D K+ P QQ LI GK L+D TL+
Sbjct: 5 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLS 61
Query: 61 DNKVSEDGFLVVML 74
D + ++ L ++L
Sbjct: 62 DYNIQKESTLHLVL 75
>gi|53987035|gb|AAV27297.1| poly-histidine-tagged ubiquitin [Cloning vector pHUE]
Length = 130
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 44/74 (59%), Gaps = 3/74 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D K+ P QQ LI GK L+D TL+
Sbjct: 21 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLS 77
Query: 61 DNKVSEDGFLVVML 74
D + ++ L ++L
Sbjct: 78 DYNIQKESTLHLVL 91
>gi|5523981|gb|AAD44043.1|AF104026_1 polyprotein [Bovine viral diarrhea virus 2]
Length = 216
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 44/75 (58%), Gaps = 3/75 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D K+ P QQ LI GK L+D TL+
Sbjct: 84 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLS 140
Query: 61 DNKVSEDGFLVVMLS 75
D + ++ L ++L
Sbjct: 141 DYNIQKESTLHLVLR 155
>gi|297742776|emb|CBI35456.3| unnamed protein product [Vitis vinifera]
Length = 182
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 37/100 (37%), Positives = 52/100 (52%), Gaps = 13/100 (13%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+ SDT+ VK I+D K+ P QQ LI GK L+D TLA
Sbjct: 61 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLA 117
Query: 61 DNKVSEDGFLVVMLSKSKT-------LGSAGASSAQPAHT 93
D + +D + LS + +G+ AS+A P T
Sbjct: 118 DYNIQKDALI---LSAVRVPSWPIILIGTIVASAASPMFT 154
>gi|226469792|emb|CAX76726.1| polyubiquitin [Schistosoma japonicum]
Length = 228
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 40/122 (32%), Positives = 59/122 (48%), Gaps = 13/122 (10%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D K+ P QQ LI GK L+D TL+
Sbjct: 77 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLS 133
Query: 61 DNKVSEDGFLVVMLSKS-------KTL-GSAGASSAQPAHTTPPTTA--PSSNSTPPQEA 110
D + ++ L ++L KTL G + +P+ T A P PP +
Sbjct: 134 DYNIQKESTLHLVLRLRGGMQIFVKTLTGKTISLEVEPSDTIENVKAKIPDKEGIPPDQQ 193
Query: 111 SV 112
+
Sbjct: 194 RL 195
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 44/75 (58%), Gaps = 3/75 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D K+ P QQ LI GK L+D TL+
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLS 57
Query: 61 DNKVSEDGFLVVMLS 75
D + ++ L ++L
Sbjct: 58 DYNIQKESTLHLVLR 72
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 43/75 (57%), Gaps = 3/75 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I D K+ P QQ LI GK L+D TL+
Sbjct: 153 MQIFVKTLTGKTISLEVEPSDTIENVKAKIPD---KEGIPPDQQRLIFAGKQLEDGRTLS 209
Query: 61 DNKVSEDGFLVVMLS 75
D + ++ L ++L
Sbjct: 210 DYNIQKESTLHLVLR 224
>gi|324532777|gb|ADY49258.1| Polyubiquitin, partial [Ascaris suum]
Length = 187
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 44/74 (59%), Gaps = 3/74 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSD V VK I+D K+ P QQ LI GK L+D+ TL+
Sbjct: 77 MQIFVKTLTGKTLTLEVEPSDAVQHVKAKIQD---KEGIPPDQQRLIFAGKQLEDDRTLS 133
Query: 61 DNKVSEDGFLVVML 74
D + ++ L ++L
Sbjct: 134 DYNIQKESTLHLVL 147
Score = 47.0 bits (110), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 43/74 (58%), Gaps = 3/74 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+ SDT+ VK I+D K+ P QQ LI GK L+D TL+
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIENVKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLS 57
Query: 61 DNKVSEDGFLVVML 74
D + ++ L ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|242018298|ref|XP_002429615.1| NEDD8 precursor, putative [Pediculus humanus corporis]
gi|212514588|gb|EEB16877.1| NEDD8 precursor, putative [Pediculus humanus corporis]
Length = 85
Score = 51.2 bits (121), Expect = 4e-04, Method: Composition-based stats.
Identities = 29/75 (38%), Positives = 43/75 (57%), Gaps = 3/75 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M + VKTL G EI ++P+D V +K+ +E+ K+ P QQ LI +GK + DE T
Sbjct: 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEE---KEGIPPQQQRLIFSGKQMNDEKTAQ 57
Query: 61 DNKVSEDGFLVVMLS 75
D KV L ++L+
Sbjct: 58 DYKVQGGSVLHLVLA 72
>gi|270007617|gb|EFA04065.1| hypothetical protein TcasGA2_TC014299 [Tribolium castaneum]
Length = 79
Score = 51.2 bits (121), Expect = 4e-04, Method: Composition-based stats.
Identities = 29/75 (38%), Positives = 43/75 (57%), Gaps = 3/75 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M + VKTL G EI ++P+D V +K+ +E+ K+ P QQ LI +GK + DE T
Sbjct: 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEE---KEGIPPQQQRLIFSGKQMNDEKTAQ 57
Query: 61 DNKVSEDGFLVVMLS 75
D KV L ++L+
Sbjct: 58 DYKVQGGSVLHLVLA 72
>gi|123471218|ref|XP_001318810.1| polyubiquitin [Trichomonas vaginalis G3]
gi|123479158|ref|XP_001322738.1| polyubiquitin [Trichomonas vaginalis G3]
gi|123501326|ref|XP_001328048.1| polyubiquitin [Trichomonas vaginalis G3]
gi|121901578|gb|EAY06587.1| polyubiquitin, putative [Trichomonas vaginalis G3]
gi|121905590|gb|EAY10515.1| polyubiquitin, putative [Trichomonas vaginalis G3]
gi|121910986|gb|EAY15825.1| polyubiquitin, putative [Trichomonas vaginalis G3]
Length = 153
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 43/75 (57%), Gaps = 3/75 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G H + V+P+D + VK I+D K+ P QQ LI GK L+D TL
Sbjct: 1 MQIFVKTLTGKHITLEVEPTDRIEDVKAKIQD---KEGIPPDQQRLIFAGKQLEDGNTLQ 57
Query: 61 DNKVSEDGFLVVMLS 75
D + +D L ++L
Sbjct: 58 DYSIQKDSTLHLVLR 72
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 43/75 (57%), Gaps = 3/75 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G H + V+P+D + VK I+D K+ P QQ LI GK L+D TL
Sbjct: 77 MQIFVKTLTGKHITLEVEPTDRIEDVKAKIQD---KEGIPPDQQRLIFAGKQLEDGNTLQ 133
Query: 61 DNKVSEDGFLVVMLS 75
D + +D L ++L
Sbjct: 134 DYSIQKDSTLHLVLR 148
>gi|5523969|gb|AAD44037.1|AF104020_1 polyprotein [Bovine viral diarrhea virus 2]
Length = 318
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 44/75 (58%), Gaps = 3/75 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D K+ P QQ LI GK L+D TL+
Sbjct: 186 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLS 242
Query: 61 DNKVSEDGFLVVMLS 75
D + ++ L ++L
Sbjct: 243 DYNIQKESTLHLVLR 257
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 44/75 (58%), Gaps = 3/75 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D K+ P Q+ LI GK L+D TL+
Sbjct: 110 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQD---KEGIPPDQRRLIFAGKQLEDGRTLS 166
Query: 61 DNKVSEDGFLVVMLS 75
D + ++ L ++L
Sbjct: 167 DYNIQKESTLHLVLR 181
>gi|340966851|gb|EGS22358.1| 40S ribosomal protein S27a-like protein [Chaetomium thermophilum
var. thermophilum DSM 1495]
Length = 154
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 34/95 (35%), Positives = 50/95 (52%), Gaps = 7/95 (7%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D K+ P QQ LI GK L+D TL+
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIDTVKSKIQD---KEGIPPDQQRLIFAGKQLEDGRTLS 57
Query: 61 DNKVSEDGFLVVMLSKSKTLGSAGASSAQPAHTTP 95
D + ++ L ++L L + +TTP
Sbjct: 58 DYNIQKESTLHLVLR----LRGGAKKRKKKVYTTP 88
>gi|325677695|ref|ZP_08157347.1| ubiquitin family [Ruminococcus albus 8]
gi|324110663|gb|EGC04827.1| ubiquitin family [Ruminococcus albus 8]
Length = 646
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 44/79 (55%), Gaps = 3/79 (3%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ KTL G + V+PSD++ VK I+D K+ P QQ LI GK L+D TLA
Sbjct: 42 MQIFTKTLTGKTITLDVEPSDSIENVKAKIQD---KEGIPPDQQRLIFAGKQLEDNRTLA 98
Query: 61 DNKVSEDGFLVVMLSKSKT 79
D + ++ L ++L T
Sbjct: 99 DYNIQKESTLHLVLRNVAT 117
>gi|123390682|ref|XP_001299927.1| polyubiquitin [Trichomonas vaginalis G3]
gi|121880876|gb|EAX86997.1| polyubiquitin [Trichomonas vaginalis G3]
Length = 153
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 43/75 (57%), Gaps = 3/75 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G H + V+P+D + VK I+D K+ P QQ LI GK L+D TL
Sbjct: 1 MQIFVKTLTGKHITLEVEPTDRIEDVKAKIQD---KEGIPPDQQRLIFAGKQLEDGNTLQ 57
Query: 61 DNKVSEDGFLVVMLS 75
D + +D L ++L
Sbjct: 58 DYSIQKDSTLHLVLR 72
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 43/75 (57%), Gaps = 3/75 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G H + V+P+D + VK I+D K+ P QQ LI GK L+D TL
Sbjct: 77 MQIFVKTLTGKHITLEVEPTDRIEDVKAKIQD---KEGIPPDQQRLIFAGKQLEDGNTLQ 133
Query: 61 DNKVSEDGFLVVMLS 75
D + +D L ++L
Sbjct: 134 DYSIQKDSTLHLVLR 148
>gi|403260765|ref|XP_003922826.1| PREDICTED: polyubiquitin-B-like [Saimiri boliviensis boliviensis]
Length = 81
Score = 51.2 bits (121), Expect = 4e-04, Method: Composition-based stats.
Identities = 29/75 (38%), Positives = 42/75 (56%), Gaps = 1/75 (1%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDV-QGKDNYPCGQQLLIHNGKVLKDETTL 59
M++ VKTL G + V+PSDT+ VK I Q K+ P Q LI GK L+D TL
Sbjct: 1 MQIVVKTLTGKTITLEVEPSDTIENVKAKIRKASQDKEGIPADHQRLIFAGKQLEDGRTL 60
Query: 60 ADNKVSEDGFLVVML 74
+D + ++ L ++L
Sbjct: 61 SDYDIQKESTLHLVL 75
>gi|429327043|gb|AFZ78850.1| polyubiquitin [Coptotermes formosanus]
Length = 230
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 43/75 (57%), Gaps = 3/75 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G H + V+P+D + VK I+D K+ P QQ LI GK L+D TL
Sbjct: 1 MQIFVKTLTGKHITLEVEPTDRIEDVKAKIQD---KEGIPPDQQRLIFAGKQLEDGNTLQ 57
Query: 61 DNKVSEDGFLVVMLS 75
D + +D L ++L
Sbjct: 58 DYSIQKDSTLHLVLR 72
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 43/75 (57%), Gaps = 3/75 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G H + V+P+D + VK I+D K+ P QQ LI GK L+D TL
Sbjct: 77 MQIFVKTLTGKHITLEVEPTDRIEDVKAKIQD---KEGIPPDQQRLIFAGKQLEDGNTLQ 133
Query: 61 DNKVSEDGFLVVMLS 75
D + +D L ++L
Sbjct: 134 DYSIQKDSTLHLVLR 148
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 43/75 (57%), Gaps = 3/75 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G H + V+P+D + VK I+D K+ P QQ LI GK L+D TL
Sbjct: 153 MQIFVKTLTGKHITLEVEPTDRIEDVKAKIQD---KEGIPPDQQRLIFAGKQLEDGNTLQ 209
Query: 61 DNKVSEDGFLVVMLS 75
D + +D L ++L
Sbjct: 210 DYSIQKDSTLHLVLR 224
>gi|208558|gb|AAA72679.1| synthetic ubiquitin [synthetic construct]
Length = 76
Score = 51.2 bits (121), Expect = 4e-04, Method: Composition-based stats.
Identities = 30/74 (40%), Positives = 44/74 (59%), Gaps = 3/74 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D K+ P QQ LI GK L+D TL+
Sbjct: 1 MQIFVKTLTGKTICLEVEPSDTIENVKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLS 57
Query: 61 DNKVSEDGFLVVML 74
D + ++ L ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|33622252|ref|NP_891899.1| v-ubi [Cryptophlebia leucotreta granulovirus]
gi|33569361|gb|AAQ21647.1| v-ubi [Cryptophlebia leucotreta granulovirus]
Length = 76
Score = 51.2 bits (121), Expect = 4e-04, Method: Composition-based stats.
Identities = 30/74 (40%), Positives = 42/74 (56%), Gaps = 3/74 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+P+DTV VK+ I D K+ P QQ LI GK L DE L
Sbjct: 1 MQIFVKTLTGKTITVDVEPADTVAMVKQKISD---KEGVPQDQQRLIFAGKQLDDERQLN 57
Query: 61 DNKVSEDGFLVVML 74
D + ++ L ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|13172889|gb|AAK14236.1|AF321438_1 polyubiquitin GmUb1 [Galleria mellonella]
Length = 77
Score = 51.2 bits (121), Expect = 4e-04, Method: Composition-based stats.
Identities = 29/70 (41%), Positives = 41/70 (58%), Gaps = 3/70 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D K+ P QQ LI GK L+D TL+
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLS 57
Query: 61 DNKVSEDGFL 70
D + ++ L
Sbjct: 58 DYHIQKESTL 67
>gi|197129054|gb|ACH45552.1| putative ubiquitin C variant 1 [Taeniopygia guttata]
Length = 77
Score = 51.2 bits (121), Expect = 5e-04, Method: Composition-based stats.
Identities = 29/74 (39%), Positives = 42/74 (56%), Gaps = 3/74 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M + VKTL G + V+P+DT+ VK I Q K+ P QQ LI GK L+D TL+
Sbjct: 1 MHIFVKTLTGKTLSLEVEPTDTIENVKAKI---QAKEGIPPDQQRLIFAGKQLEDGRTLS 57
Query: 61 DNKVSEDGFLVVML 74
D + ++ L ++L
Sbjct: 58 DYNIQKESILHLVL 71
>gi|417408300|gb|JAA50711.1| Putative ribosomal protein s27a, partial [Desmodus rotundus]
Length = 166
Score = 51.2 bits (121), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 34/95 (35%), Positives = 51/95 (53%), Gaps = 7/95 (7%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D K+ P QQ LI GK L+D TL+
Sbjct: 11 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLS 67
Query: 61 DNKVSEDGFLVVMLSKSKTLGSAGASSAQPAHTTP 95
D + ++ L ++L L + ++TTP
Sbjct: 68 DYNIQKESTLHLVLR----LRGGAKKRKKKSYTTP 98
>gi|354483686|ref|XP_003504023.1| PREDICTED: ubiquitin-40S ribosomal protein S27a-like [Cricetulus
griseus]
Length = 156
Score = 51.2 bits (121), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 34/95 (35%), Positives = 51/95 (53%), Gaps = 7/95 (7%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D +G P QQ LI GK L+D TL+
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 61 DNKVSEDGFLVVMLSKSKTLGSAGASSAQPAHTTP 95
D + ++ L ++L L + ++TTP
Sbjct: 58 DYNIQKESTLHLVLR----LRGGAKKRKKKSYTTP 88
>gi|304445694|pdb|2XK5|B Chain B, Crystal Structure Of K6-Linked Diubiquitin
Length = 76
Score = 51.2 bits (121), Expect = 5e-04, Method: Composition-based stats.
Identities = 30/74 (40%), Positives = 44/74 (59%), Gaps = 3/74 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D K+ P QQ LI GK L+D TL+
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQD---KEGIPPQQQRLIFAGKQLEDGRTLS 57
Query: 61 DNKVSEDGFLVVML 74
D + ++ L ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|123390686|ref|XP_001299928.1| polyubiquitin [Trichomonas vaginalis G3]
gi|121880877|gb|EAX86998.1| polyubiquitin, putative [Trichomonas vaginalis G3]
Length = 186
Score = 51.2 bits (121), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 43/75 (57%), Gaps = 3/75 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G H + V+P+D + VK I+D K+ P QQ LI GK L+D TL
Sbjct: 110 MQIFVKTLTGKHITLEVEPTDRIEDVKAKIQD---KEGIPPDQQRLIFAGKQLEDGNTLQ 166
Query: 61 DNKVSEDGFLVVMLS 75
D + +D L ++L
Sbjct: 167 DYSIQKDSTLHLVLR 181
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 40/71 (56%), Gaps = 3/71 (4%)
Query: 5 VKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKV 64
VKTL G H + V+P+D + VK I+D K+ P QQ LI GK L+D TL D +
Sbjct: 38 VKTLTGKHITLEVEPTDRIEDVKTKIQD---KEGIPPDQQRLIFAGKQLEDGNTLQDYSI 94
Query: 65 SEDGFLVVMLS 75
+D L ++L
Sbjct: 95 QKDSTLHLVLR 105
>gi|116326095|ref|YP_803420.1| ubiquitin like protein [Anticarsia gemmatalis
nucleopolyhedrovirus]
gi|112180833|gb|ABI13810.1| ubiquitin like protein [Anticarsia gemmatalis
nucleopolyhedrovirus]
Length = 78
Score = 51.2 bits (121), Expect = 5e-04, Method: Composition-based stats.
Identities = 28/74 (37%), Positives = 44/74 (59%), Gaps = 3/74 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKT+ G + +PSD+V VK+ I D K+ P QQ LI+ GK L+D T+A
Sbjct: 1 MQIFVKTMTGKTITVETEPSDSVGQVKQKIAD---KEGVPVDQQRLIYAGKQLEDSKTMA 57
Query: 61 DNKVSEDGFLVVML 74
D + ++ L ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|92790162|emb|CAI83750.1| Polyubiqutin 4 [Isotricha prostoma]
Length = 143
Score = 51.2 bits (121), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 44/75 (58%), Gaps = 3/75 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D +G P QQ LI GK L+D TLA
Sbjct: 67 MQIFVKTLTGKTITLDVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDNRTLA 123
Query: 61 DNKVSEDGFLVVMLS 75
D + ++ L ++L
Sbjct: 124 DYNIQKESTLHLVLR 138
Score = 43.9 bits (102), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 38/128 (29%), Positives = 55/128 (42%), Gaps = 16/128 (12%)
Query: 17 VQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVMLSK 76
V+PSDT+ VK I+D +G P QQ LI GK L+D TLAD + ++ L ++L
Sbjct: 7 VEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDNRTLADYNIQKESTLHLVLRL 63
Query: 77 S-------KTL-GSAGASSAQPAHTTPPTTAPSSNSTPPQEASVPPPAPTPSIPASNVTS 128
KTL G +P+ T A + + +PP +
Sbjct: 64 RGGMQIFVKTLTGKTITLDVEPSDTIENVKAKIQD-----KEGIPPDQQRLIFAGKQLED 118
Query: 129 NVTAANAN 136
N T A+ N
Sbjct: 119 NRTLADYN 126
>gi|123445177|ref|XP_001311351.1| polyubiquitin [Trichomonas vaginalis G3]
gi|121893157|gb|EAX98421.1| polyubiquitin, putative [Trichomonas vaginalis G3]
Length = 229
Score = 51.2 bits (121), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 43/75 (57%), Gaps = 3/75 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G H + V+P+D + VK I+D K+ P QQ LI GK L+D TL
Sbjct: 1 MQIFVKTLTGKHITLEVEPTDRIEDVKAKIQD---KEGIPPDQQRLIFAGKQLEDGNTLQ 57
Query: 61 DNKVSEDGFLVVMLS 75
D + +D L ++L
Sbjct: 58 DYSIQKDSTLHLVLR 72
Score = 51.2 bits (121), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 43/75 (57%), Gaps = 3/75 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G H + V+P+D + VK I+D K+ P QQ LI GK L+D TL
Sbjct: 77 MQIFVKTLTGKHITLEVEPTDRIEDVKAKIQD---KEGIPPDQQRLIFAGKQLEDGNTLQ 133
Query: 61 DNKVSEDGFLVVMLS 75
D + +D L ++L
Sbjct: 134 DYSIQKDSTLHLVLR 148
Score = 51.2 bits (121), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 43/75 (57%), Gaps = 3/75 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G H + V+P+D + VK I+D K+ P QQ LI GK L+D TL
Sbjct: 153 MQIFVKTLTGKHITLEVEPTDRIEDVKAKIQD---KEGIPPDQQRLIFAGKQLEDGNTLQ 209
Query: 61 DNKVSEDGFLVVMLS 75
D + +D L ++L
Sbjct: 210 DYSIQKDSTLHLVLR 224
>gi|24585074|ref|NP_609919.1| Nedd8 [Drosophila melanogaster]
gi|74869351|sp|Q9VJ33.1|NEDD8_DROME RecName: Full=NEDD8; AltName: Full=Neddylin; AltName:
Full=Ubiquitin-like protein Nedd8; Flags: Precursor
gi|7298505|gb|AAF53724.1| Nedd8 [Drosophila melanogaster]
gi|85861116|gb|ABC86507.1| IP01714p [Drosophila melanogaster]
gi|220952250|gb|ACL88668.1| Nedd8-PA [synthetic construct]
gi|220958736|gb|ACL91911.1| Nedd8-PA [synthetic construct]
Length = 84
Score = 51.2 bits (121), Expect = 5e-04, Method: Composition-based stats.
Identities = 29/75 (38%), Positives = 44/75 (58%), Gaps = 3/75 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M + VKTL G EI ++P+D V +K+ +E+ K+ P QQ LI +GK + D+ T A
Sbjct: 1 MLIKVKTLTGKEIEIDIEPTDKVDRIKERVEE---KEGIPPQQQRLIFSGKQMNDDKTAA 57
Query: 61 DNKVSEDGFLVVMLS 75
D KV L ++L+
Sbjct: 58 DYKVQGGSVLHLVLA 72
>gi|296478557|tpg|DAA20672.1| TPA: ubiquitin B-like [Bos taurus]
Length = 77
Score = 51.2 bits (121), Expect = 5e-04, Method: Composition-based stats.
Identities = 30/74 (40%), Positives = 44/74 (59%), Gaps = 3/74 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D K+ P QQ LI GK L+D TL+
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQD---KEGIPPDQQRLILAGKQLEDGRTLS 57
Query: 61 DNKVSEDGFLVVML 74
D + ++ L ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|72114831|ref|XP_785172.1| PREDICTED: NEDD8-like [Strongylocentrotus purpuratus]
Length = 78
Score = 51.2 bits (121), Expect = 5e-04, Method: Composition-based stats.
Identities = 28/75 (37%), Positives = 44/75 (58%), Gaps = 3/75 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M + VKTL G EI ++P D V +K+ +E+ K+ P QQ LI +GK + D+ T +
Sbjct: 1 MLIKVKTLTGKEIEIDIEPMDKVERIKERVEE---KEGIPPAQQRLIFSGKQMNDDKTAS 57
Query: 61 DNKVSEDGFLVVMLS 75
D KV+ L ++L+
Sbjct: 58 DYKVNGGSVLHLVLA 72
>gi|28189426|dbj|BAC56381.1| similar to ubiquitin-S27a fusion protein [Bos taurus]
Length = 145
Score = 51.2 bits (121), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 34/95 (35%), Positives = 51/95 (53%), Gaps = 7/95 (7%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D K+ P QQ LI GK L+D TL+
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLS 57
Query: 61 DNKVSEDGFLVVMLSKSKTLGSAGASSAQPAHTTP 95
D + ++ L ++L L + ++TTP
Sbjct: 58 DYNIQKESTLHLVLR----LRGGAKKRKKKSYTTP 88
>gi|195587566|ref|XP_002083532.1| GD13313 [Drosophila simulans]
gi|194195541|gb|EDX09117.1| GD13313 [Drosophila simulans]
Length = 195
Score = 51.2 bits (121), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 41/122 (33%), Positives = 59/122 (48%), Gaps = 13/122 (10%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D K+ P QQ LI GK L+D TL+
Sbjct: 77 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLS 133
Query: 61 DNKVSEDGFLVVMLSKS-------KTL-GSAGASSAQPAHTTPPTTAPSSNS--TPPQEA 110
D + ++ L ++L KTL G +P+ T A + PP +
Sbjct: 134 DYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQG 193
Query: 111 SV 112
SV
Sbjct: 194 SV 195
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 44/75 (58%), Gaps = 3/75 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D K+ P QQ LI GK L+D TL+
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLS 57
Query: 61 DNKVSEDGFLVVMLS 75
D + ++ L ++L
Sbjct: 58 DYNIQKESTLHLVLR 72
>gi|189195066|ref|XP_001933871.1| integral membrane protein [Pyrenophora tritici-repentis Pt-1C-BFP]
gi|187979750|gb|EDU46376.1| integral membrane protein [Pyrenophora tritici-repentis Pt-1C-BFP]
Length = 435
Score = 51.2 bits (121), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 41/72 (56%), Gaps = 4/72 (5%)
Query: 3 LTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADN 62
+ VKTL G H + V DT+ +K I Q K+ P QQ LI NGK L+D TLAD
Sbjct: 213 IFVKTLTGKHITLSVWKEDTISMIKDMI---QVKEGIPLSQQRLIFNGKQLEDGRTLADY 269
Query: 63 KVSEDGFLVVML 74
+ E+ F +V++
Sbjct: 270 GI-ENEFTIVLV 280
>gi|323714499|pdb|3ONS|A Chain A, Crystal Structure Of Human Ubiquitin In A New Crystal
Form
Length = 72
Score = 51.2 bits (121), Expect = 5e-04, Method: Composition-based stats.
Identities = 30/74 (40%), Positives = 44/74 (59%), Gaps = 3/74 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D K+ P QQ LI GK L+D TL+
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLS 57
Query: 61 DNKVSEDGFLVVML 74
D + ++ L ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|323454622|gb|EGB10492.1| hypothetical protein AURANDRAFT_23768 [Aureococcus
anophagefferens]
Length = 217
Score = 51.2 bits (121), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 45/75 (60%), Gaps = 3/75 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK+ I+D K+ P QQ LI GK L+D TL+
Sbjct: 1 MQIFVKTLTGKTITLDVEPSDTIDNVKQKIQD---KEGIPPDQQRLIFAGKQLEDGRTLS 57
Query: 61 DNKVSEDGFLVVMLS 75
D + ++ L ++L
Sbjct: 58 DYNIQKESTLHLVLR 72
>gi|1101011|gb|AAC46935.1| polyubiquitin, partial [Trichomonas vaginalis]
Length = 770
Score = 51.2 bits (121), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 43/75 (57%), Gaps = 3/75 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G H + V+P+D + VK I+D K+ P QQ LI GK L+D TL
Sbjct: 10 MQIFVKTLTGKHITLEVEPTDRIEDVKAKIQD---KEGIPPDQQRLIFAGKQLEDGNTLQ 66
Query: 61 DNKVSEDGFLVVMLS 75
D + +D L ++L
Sbjct: 67 DYSIQKDSTLHLVLR 81
Score = 51.2 bits (121), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 43/75 (57%), Gaps = 3/75 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G H + V+P+D + VK I+D K+ P QQ LI GK L+D TL
Sbjct: 86 MQIFVKTLTGKHITLEVEPTDRIEDVKAKIQD---KEGIPPDQQRLIFAGKQLEDGNTLQ 142
Query: 61 DNKVSEDGFLVVMLS 75
D + +D L ++L
Sbjct: 143 DYSIQKDSTLHLVLR 157
Score = 51.2 bits (121), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 43/75 (57%), Gaps = 3/75 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G H + V+P+D + VK I+D K+ P QQ LI GK L+D TL
Sbjct: 162 MQIFVKTLTGKHITLEVEPTDRIEDVKAKIQD---KEGIPPDQQRLIFAGKQLEDGNTLQ 218
Query: 61 DNKVSEDGFLVVMLS 75
D + +D L ++L
Sbjct: 219 DYSIQKDSTLHLVLR 233
Score = 51.2 bits (121), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 43/75 (57%), Gaps = 3/75 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G H + V+P+D + VK I+D K+ P QQ LI GK L+D TL
Sbjct: 238 MQIFVKTLTGKHITLEVEPTDRIEDVKAKIQD---KEGIPPDQQRLIFAGKQLEDGNTLQ 294
Query: 61 DNKVSEDGFLVVMLS 75
D + +D L ++L
Sbjct: 295 DYSIQKDSTLHLVLR 309
Score = 51.2 bits (121), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 43/75 (57%), Gaps = 3/75 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G H + V+P+D + VK I+D K+ P QQ LI GK L+D TL
Sbjct: 314 MQIFVKTLTGKHITLEVEPTDRIEDVKAKIQD---KEGIPPDQQRLIFAGKQLEDGNTLQ 370
Query: 61 DNKVSEDGFLVVMLS 75
D + +D L ++L
Sbjct: 371 DYSIQKDSTLHLVLR 385
Score = 51.2 bits (121), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 43/75 (57%), Gaps = 3/75 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G H + V+P+D + VK I+D K+ P QQ LI GK L+D TL
Sbjct: 390 MQIFVKTLTGKHITLEVEPTDRIEDVKAKIQD---KEGIPPDQQRLIFAGKQLEDGNTLQ 446
Query: 61 DNKVSEDGFLVVMLS 75
D + +D L ++L
Sbjct: 447 DYSIQKDSTLHLVLR 461
Score = 51.2 bits (121), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 43/75 (57%), Gaps = 3/75 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G H + V+P+D + VK I+D K+ P QQ LI GK L+D TL
Sbjct: 466 MQIFVKTLTGKHITLEVEPTDRIEDVKAKIQD---KEGIPPDQQRLIFAGKQLEDGNTLQ 522
Query: 61 DNKVSEDGFLVVMLS 75
D + +D L ++L
Sbjct: 523 DYSIQKDSTLHLVLR 537
Score = 51.2 bits (121), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 43/75 (57%), Gaps = 3/75 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G H + V+P+D + VK I+D K+ P QQ LI GK L+D TL
Sbjct: 542 MQIFVKTLTGKHITLEVEPTDRIEDVKAKIQD---KEGIPPDQQRLIFAGKQLEDGNTLQ 598
Query: 61 DNKVSEDGFLVVMLS 75
D + +D L ++L
Sbjct: 599 DYSIQKDSTLHLVLR 613
Score = 51.2 bits (121), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 43/75 (57%), Gaps = 3/75 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G H + V+P+D + VK I+D K+ P QQ LI GK L+D TL
Sbjct: 618 MQIFVKTLTGKHITLEVEPTDRIEDVKAKIQD---KEGIPPDQQRLIFAGKQLEDGNTLQ 674
Query: 61 DNKVSEDGFLVVMLS 75
D + +D L ++L
Sbjct: 675 DYSIQKDSTLHLVLR 689
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 42/75 (56%), Gaps = 3/75 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G H + V+P+D + VK I Q K+ P QQ LI GK L+D TL
Sbjct: 694 MQIFVKTLTGKHITLEVEPTDRIEDVKAKI---QVKEGIPPDQQGLIFAGKQLEDGKTLQ 750
Query: 61 DNKVSEDGFLVVMLS 75
D + +D L ++L
Sbjct: 751 DYSIQKDSTLHLVLR 765
>gi|339232958|ref|XP_003381596.1| ubiquitin family protein [Trichinella spiralis]
gi|316979574|gb|EFV62350.1| ubiquitin family protein [Trichinella spiralis]
Length = 152
Score = 51.2 bits (121), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 44/75 (58%), Gaps = 3/75 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDTV VK I+D K+ P QQ LI GK L+D TL+
Sbjct: 71 MQIFVKTLTGKTITLEVEPSDTVENVKGKIQD---KEGIPPDQQRLIFAGKQLEDSRTLS 127
Query: 61 DNKVSEDGFLVVMLS 75
D + ++ L ++L
Sbjct: 128 DYNIQKESTLHLVLR 142
Score = 37.7 bits (86), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 33/57 (57%), Gaps = 3/57 (5%)
Query: 19 PSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVMLS 75
PSDT+ VK I+D K+ P QQ LI GK L+D TL+D + ++ L ++L
Sbjct: 13 PSDTIENVKGKIQD---KEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 66
>gi|156717936|ref|NP_001096510.1| ubiquitin-like protein 4A [Xenopus (Silurana) tropicalis]
gi|317412163|sp|A4QND0.1|UBL4A_XENTR RecName: Full=Ubiquitin-like protein 4A
gi|140833020|gb|AAI35439.1| LOC100125140 protein [Xenopus (Silurana) tropicalis]
Length = 148
Score = 51.2 bits (121), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 29/60 (48%), Positives = 36/60 (60%), Gaps = 3/60 (5%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M+LTVK LKG I+V DTV+AVK+ +E+ K P QQ L+ GK L DE LA
Sbjct: 1 MQLTVKALKGKEANIQVSEGDTVLAVKRLVEE---KLKVPVSQQRLLFRGKALADEHCLA 57
>gi|109157814|pdb|2GBR|A Chain A, Crystal Structure Of The 35-36 Moad Insertion Mutant Of
Ubiquitin
gi|109157815|pdb|2GBR|B Chain B, Crystal Structure Of The 35-36 Moad Insertion Mutant Of
Ubiquitin
gi|109157816|pdb|2GBR|C Chain C, Crystal Structure Of The 35-36 Moad Insertion Mutant Of
Ubiquitin
Length = 81
Score = 51.2 bits (121), Expect = 5e-04, Method: Composition-based stats.
Identities = 30/76 (39%), Positives = 45/76 (59%), Gaps = 2/76 (2%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGK--DNYPCGQQLLIHNGKVLKDETT 58
M++ VKTL G + V+PSDT+ VK I+D +G+ P QQ LI GK L+D T
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGRWALAIPPDQQRLIFAGKQLEDGRT 60
Query: 59 LADNKVSEDGFLVVML 74
L+D + ++ L ++L
Sbjct: 61 LSDYNIQKESTLHLVL 76
>gi|47604951|ref|NP_990284.1| ubiquitin-40S ribosomal protein S27a [Gallus gallus]
gi|224047492|ref|XP_002199635.1| PREDICTED: ubiquitin-40S ribosomal protein S27a [Taeniopygia
guttata]
gi|302393814|sp|P79781.3|RS27A_CHICK RecName: Full=Ubiquitin-40S ribosomal protein S27a; AltName:
Full=Ubiquitin carboxyl extension protein 80; Contains:
RecName: Full=Ubiquitin; Contains: RecName: Full=40S
ribosomal protein S27a; Flags: Precursor
gi|1763015|gb|AAC60279.1| ubiquitin/ribosomal protein [Gallus gallus]
gi|300676798|gb|ADK26674.1| ribosomal protein S27a [Zonotrichia albicollis]
gi|300676895|gb|ADK26767.1| ribosomal protein S27a [Zonotrichia albicollis]
gi|387018372|gb|AFJ51304.1| Ubiquitin-40S ribosomal protein S27a-like [Crotalus adamanteus]
Length = 156
Score = 51.2 bits (121), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 34/95 (35%), Positives = 51/95 (53%), Gaps = 7/95 (7%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D +G P QQ LI GK L+D TL+
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 61 DNKVSEDGFLVVMLSKSKTLGSAGASSAQPAHTTP 95
D + ++ L ++L L + ++TTP
Sbjct: 58 DYNIQKESTLHLVLR----LRGGAKKRKKKSYTTP 88
>gi|156396888|ref|XP_001637624.1| predicted protein [Nematostella vectensis]
gi|156224738|gb|EDO45561.1| predicted protein [Nematostella vectensis]
Length = 147
Score = 51.2 bits (121), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 41/143 (28%), Positives = 60/143 (41%), Gaps = 15/143 (10%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D +G P QQ LI GK L+D TL+
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 61 DNKVSEDGFLVVMLSKSKTLGSAGASSAQPAHTTPPT-------TAPSSNSTPPQEASVP 113
D + ++ L ++L G + AH T T S +P
Sbjct: 58 DYNIQKESTLHLVLRL-----RGGMQISVKAHWKTFTLDVEASDTVESVKEKIQNREGIP 112
Query: 114 PPAPTPSIPASNVTSNVTAANAN 136
P + N + A+ N
Sbjct: 113 PKVQRLLYEEEELVDNRSLADYN 135
>gi|354683503|gb|AER34936.1| ubiquitin [Litopenaeus vannamei]
Length = 70
Score = 51.2 bits (121), Expect = 5e-04, Method: Composition-based stats.
Identities = 29/70 (41%), Positives = 41/70 (58%), Gaps = 3/70 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D K+ P QQ LI GK L+D TL+
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQD---KEGIPSDQQRLIFAGKQLEDGRTLS 57
Query: 61 DNKVSEDGFL 70
D + ++ L
Sbjct: 58 DYNIQKESTL 67
>gi|297683143|ref|XP_002819253.1| PREDICTED: ubiquitin-40S ribosomal protein S27a-like isoform 2
[Pongo abelii]
Length = 155
Score = 51.2 bits (121), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 52/95 (54%), Gaps = 8/95 (8%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ +KTL G ++V+PSD + VK I+D +G P QQ LI GK L+D TL+
Sbjct: 1 MQIFMKTLMGKTITLKVEPSDMIENVKAKIQDKEG---IPPHQQRLIFAGKQLEDGRTLS 57
Query: 61 DNKVSEDGFLVVMLSKSKTLGSAGASSAQPAHTTP 95
D + ++ L ++L GA + ++TTP
Sbjct: 58 DYNIQKESTLHLVLRL-----RGGAKKRKKSYTTP 87
>gi|226484047|emb|CAX79692.1| ubiquitin C [Schistosoma japonicum]
Length = 229
Score = 51.2 bits (121), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 44/75 (58%), Gaps = 3/75 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D K+ P QQ LI GK LKD TL+
Sbjct: 153 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQD---KEGIPPDQQRLIFAGKQLKDGRTLS 209
Query: 61 DNKVSEDGFLVVMLS 75
D + ++ L ++L
Sbjct: 210 DYNIQKESTLHLVLR 224
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 44/75 (58%), Gaps = 3/75 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D K+ P QQ LI GK L+D TL+
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLS 57
Query: 61 DNKVSEDGFLVVMLS 75
D + ++ L ++L
Sbjct: 58 DYNIQKESTLHLVLR 72
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 44/75 (58%), Gaps = 3/75 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D K+ P QQ LI GK L+D TL+
Sbjct: 77 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLS 133
Query: 61 DNKVSEDGFLVVMLS 75
D + ++ L ++L
Sbjct: 134 DYNIQKESTLHLVLR 148
>gi|344283081|ref|XP_003413301.1| PREDICTED: ubiquitin-60S ribosomal protein L40-like [Loxodonta
africana]
Length = 179
Score = 51.2 bits (121), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 44/75 (58%), Gaps = 3/75 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D K+ P QQ LI GK L+D TL+
Sbjct: 52 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLS 108
Query: 61 DNKVSEDGFLVVMLS 75
D + ++ L ++L
Sbjct: 109 DYNIQKESTLHLVLR 123
>gi|4506713|ref|NP_002945.1| ubiquitin-40S ribosomal protein S27a precursor [Homo sapiens]
gi|27807503|ref|NP_777203.1| ubiquitin-40S ribosomal protein S27a [Bos taurus]
gi|62859181|ref|NP_001016172.1| ribosomal protein S27a [Xenopus (Silurana) tropicalis]
gi|148222699|ref|NP_001086065.1| ribosomal protein S27a [Xenopus laevis]
gi|208022622|ref|NP_001129064.1| ubiquitin-40S ribosomal protein S27a precursor [Homo sapiens]
gi|290543388|ref|NP_001166537.1| ubiquitin-40S ribosomal protein S27a [Cavia porcellus]
gi|294459921|ref|NP_001170884.1| ubiquitin-40S ribosomal protein S27a precursor [Homo sapiens]
gi|302191655|ref|NP_001180515.1| 40S ribosomal protein S27a [Macaca mulatta]
gi|356582340|ref|NP_001239157.1| 40S ribosomal protein S27a [Canis lupus familiaris]
gi|357588518|ref|NP_001239528.1| 40S ribosomal protein S27a [Pan troglodytes]
gi|126303852|ref|XP_001375230.1| PREDICTED: ubiquitin-40S ribosomal protein S27a-like [Monodelphis
domestica]
gi|149640802|ref|XP_001509244.1| PREDICTED: ubiquitin-40S ribosomal protein S27a-like isoform 1
[Ornithorhynchus anatinus]
gi|149727572|ref|XP_001496841.1| PREDICTED: ubiquitin-40S ribosomal protein S27a-like [Equus
caballus]
gi|291416370|ref|XP_002724420.1| PREDICTED: ubiquitin and ribosomal protein S27a-like [Oryctolagus
cuniculus]
gi|296202145|ref|XP_002748274.1| PREDICTED: ubiquitin-40S ribosomal protein S27a-like [Callithrix
jacchus]
gi|296212949|ref|XP_002753065.1| PREDICTED: ubiquitin-40S ribosomal protein S27a-like [Callithrix
jacchus]
gi|296223829|ref|XP_002757792.1| PREDICTED: ubiquitin-40S ribosomal protein S27a-like [Callithrix
jacchus]
gi|301756480|ref|XP_002914089.1| PREDICTED: hypothetical protein LOC100476697 [Ailuropoda
melanoleuca]
gi|311252615|ref|XP_003125184.1| PREDICTED: ubiquitin-40S ribosomal protein S27a-like [Sus scrofa]
gi|311252617|ref|XP_003125185.1| PREDICTED: ubiquitin-40S ribosomal protein S27a-like [Sus scrofa]
gi|395829680|ref|XP_003787974.1| PREDICTED: ubiquitin-40S ribosomal protein S27a [Otolemur
garnettii]
gi|397521616|ref|XP_003830888.1| PREDICTED: ubiquitin-40S ribosomal protein S27a isoform 1 [Pan
paniscus]
gi|397521618|ref|XP_003830889.1| PREDICTED: ubiquitin-40S ribosomal protein S27a isoform 2 [Pan
paniscus]
gi|402890909|ref|XP_003908711.1| PREDICTED: ubiquitin-40S ribosomal protein S27a isoform 1 [Papio
anubis]
gi|402890911|ref|XP_003908712.1| PREDICTED: ubiquitin-40S ribosomal protein S27a isoform 2 [Papio
anubis]
gi|402890913|ref|XP_003908713.1| PREDICTED: ubiquitin-40S ribosomal protein S27a isoform 3 [Papio
anubis]
gi|402890915|ref|XP_003908714.1| PREDICTED: ubiquitin-40S ribosomal protein S27a isoform 4 [Papio
anubis]
gi|402891098|ref|XP_003908796.1| PREDICTED: ubiquitin-40S ribosomal protein S27a-like [Papio
anubis]
gi|403260664|ref|XP_003922781.1| PREDICTED: ubiquitin-40S ribosomal protein S27a [Saimiri
boliviensis boliviensis]
gi|410035085|ref|XP_003949844.1| PREDICTED: ubiquitin-40S ribosomal protein S27a-like isoform 1
[Pan troglodytes]
gi|410035087|ref|XP_003949845.1| PREDICTED: ubiquitin-40S ribosomal protein S27a-like isoform 2
[Pan troglodytes]
gi|410954815|ref|XP_003984057.1| PREDICTED: ubiquitin-40S ribosomal protein S27a [Felis catus]
gi|426223661|ref|XP_004005993.1| PREDICTED: ubiquitin-40S ribosomal protein S27a [Ovis aries]
gi|426335589|ref|XP_004029299.1| PREDICTED: ubiquitin-40S ribosomal protein S27a isoform 1
[Gorilla gorilla gorilla]
gi|426335591|ref|XP_004029300.1| PREDICTED: ubiquitin-40S ribosomal protein S27a isoform 2
[Gorilla gorilla gorilla]
gi|426335593|ref|XP_004029301.1| PREDICTED: ubiquitin-40S ribosomal protein S27a isoform 3
[Gorilla gorilla gorilla]
gi|426335595|ref|XP_004029302.1| PREDICTED: ubiquitin-40S ribosomal protein S27a isoform 4
[Gorilla gorilla gorilla]
gi|302393745|sp|P62979.2|RS27A_HUMAN RecName: Full=Ubiquitin-40S ribosomal protein S27a; AltName:
Full=Ubiquitin carboxyl extension protein 80; Contains:
RecName: Full=Ubiquitin; Contains: RecName: Full=40S
ribosomal protein S27a; Flags: Precursor
gi|302393754|sp|P62992.2|RS27A_BOVIN RecName: Full=Ubiquitin-40S ribosomal protein S27a; AltName:
Full=Ubiquitin carboxyl extension protein 80; Contains:
RecName: Full=Ubiquitin; Contains: RecName: Full=40S
ribosomal protein S27a; Flags: Precursor
gi|302393755|sp|P62978.2|RS27A_CAVPO RecName: Full=Ubiquitin-40S ribosomal protein S27a; AltName:
Full=Ubiquitin carboxyl extension protein 80; Contains:
RecName: Full=Ubiquitin; Contains: RecName: Full=40S
ribosomal protein S27a; Flags: Precursor
gi|70656|pir||UQHUR7 ubiquitin / ribosomal protein S27a, cytosolic [validated] - human
gi|37571|emb|CAA44911.1| ubiquitin [Homo sapiens]
gi|243888|gb|AAB21188.1| ubiquitin carboxyl extension protein [Homo sapiens]
gi|1197091|dbj|BAA11843.1| ubiquitin extention protein [Cavia porcellus]
gi|3885465|gb|AAC77907.1| ubiquitin-S27a fusion protein [Bos taurus]
gi|12655083|gb|AAH01392.1| Ribosomal protein S27a [Homo sapiens]
gi|42542651|gb|AAH66293.1| Ribosomal protein S27a [Homo sapiens]
gi|49257574|gb|AAH74147.1| MGC81889 protein [Xenopus laevis]
gi|67970806|dbj|BAE01745.1| unnamed protein product [Macaca fascicularis]
gi|89268219|emb|CAJ83451.1| ribosomal protein S27a [Xenopus (Silurana) tropicalis]
gi|119620513|gb|EAX00108.1| ribosomal protein S27a, isoform CRA_c [Homo sapiens]
gi|119620515|gb|EAX00110.1| ribosomal protein S27a, isoform CRA_c [Homo sapiens]
gi|134254273|gb|AAI35494.1| hypothetical protein LOC548926 [Xenopus (Silurana) tropicalis]
gi|158454992|gb|AAI02492.2| Ribosomal protein S27a [Bos taurus]
gi|189055074|dbj|BAG38058.1| unnamed protein product [Homo sapiens]
gi|261861184|dbj|BAI47114.1| ribosomal protein S27a [synthetic construct]
gi|296482560|tpg|DAA24675.1| TPA: 40S ribosomal protein S27a [Bos taurus]
gi|312153372|gb|ADQ33198.1| ribosomal protein S27a [synthetic construct]
gi|351702806|gb|EHB05725.1| 40S ribosomal protein S27a [Heterocephalus glaber]
gi|355565699|gb|EHH22128.1| hypothetical protein EGK_05333 [Macaca mulatta]
gi|383410367|gb|AFH28397.1| ubiquitin-40S ribosomal protein S27a precursor [Macaca mulatta]
gi|383410369|gb|AFH28398.1| ubiquitin-40S ribosomal protein S27a precursor [Macaca mulatta]
gi|384948690|gb|AFI37950.1| ubiquitin-40S ribosomal protein S27a precursor [Macaca mulatta]
gi|387540568|gb|AFJ70911.1| ubiquitin-40S ribosomal protein S27a precursor [Macaca mulatta]
Length = 156
Score = 51.2 bits (121), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 34/95 (35%), Positives = 51/95 (53%), Gaps = 7/95 (7%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D +G P QQ LI GK L+D TL+
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 61 DNKVSEDGFLVVMLSKSKTLGSAGASSAQPAHTTP 95
D + ++ L ++L L + ++TTP
Sbjct: 58 DYNIQKESTLHLVLR----LRGGAKKRKKKSYTTP 88
>gi|296238592|ref|XP_002764220.1| PREDICTED: ubiquitin-40S ribosomal protein S27a-like, partial
[Callithrix jacchus]
Length = 98
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 34/95 (35%), Positives = 51/95 (53%), Gaps = 7/95 (7%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D +G P QQ LI GK L+D TL+
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 61 DNKVSEDGFLVVMLSKSKTLGSAGASSAQPAHTTP 95
D + ++ L ++L L + ++TTP
Sbjct: 58 DYNIQKESTLHLVLR----LRGGAKKRKKKSYTTP 88
>gi|145487388|ref|XP_001429699.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|145506178|ref|XP_001439055.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|145515607|ref|XP_001443703.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|145546416|ref|XP_001458891.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124396793|emb|CAK62301.1| unnamed protein product [Paramecium tetraurelia]
gi|124406228|emb|CAK71658.1| unnamed protein product [Paramecium tetraurelia]
gi|124411092|emb|CAK76306.1| unnamed protein product [Paramecium tetraurelia]
gi|124426713|emb|CAK91494.1| unnamed protein product [Paramecium tetraurelia]
Length = 129
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 45/75 (60%), Gaps = 3/75 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ AVK I+D +G P QQ LI GK L+D TL+
Sbjct: 1 MQIFVKTLTGKTITLDVEPSDTIDAVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 61 DNKVSEDGFLVVMLS 75
D + ++ L ++L
Sbjct: 58 DYNIQKESTLHLVLR 72
>gi|327262731|ref|XP_003216177.1| PREDICTED: ubiquitin-40S ribosomal protein S27a-like [Anolis
carolinensis]
Length = 156
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 34/95 (35%), Positives = 51/95 (53%), Gaps = 7/95 (7%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D +G P QQ LI GK L+D TL+
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 61 DNKVSEDGFLVVMLSKSKTLGSAGASSAQPAHTTP 95
D + ++ L ++L L + ++TTP
Sbjct: 58 DYNIQKESTLHLVLR----LRGGAKKRKKKSYTTP 88
>gi|600539|gb|AAA57047.1| ubiquitin, partial [synthetic construct]
Length = 157
Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 34/95 (35%), Positives = 51/95 (53%), Gaps = 7/95 (7%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D +G P QQ LI GK L+D TL+
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 61 DNKVSEDGFLVVMLSKSKTLGSAGASSAQPAHTTP 95
D + ++ L ++L L + ++TTP
Sbjct: 58 DYNIQKESTLHLVLR----LRGGAKKRKKKSYTTP 88
>gi|164510076|emb|CAJ32642.1| ubiquitin [Littorina littorea]
Length = 76
Score = 50.8 bits (120), Expect = 6e-04, Method: Composition-based stats.
Identities = 31/77 (40%), Positives = 45/77 (58%), Gaps = 3/77 (3%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D K+ P QQ LI GK L+D TL+
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIDNVKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLS 57
Query: 61 DNKVSEDGFLVVMLSKS 77
D + ++ L ++L S
Sbjct: 58 DYNIQKESTLHLVLRLS 74
>gi|442746147|gb|JAA65233.1| Putative ubiquitin/40s ribosomal protein s27a fusion, partial
[Ixodes ricinus]
Length = 187
Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 50/95 (52%), Gaps = 7/95 (7%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
+++ VKTL G + V+PSDT+ VK I+D +G P QQ LI GK L+D TL+
Sbjct: 9 IQIVVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 65
Query: 61 DNKVSEDGFLVVMLSKSKTLGSAGASSAQPAHTTP 95
D + ++ L ++L L + +TTP
Sbjct: 66 DYNIQKESTLHLVLR----LRGGAKKRKKKNYTTP 96
>gi|427781391|gb|JAA56147.1| Putative ubiquitin/40s ribosomal protein s27a fusion
[Rhipicephalus pulchellus]
Length = 124
Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 34/95 (35%), Positives = 50/95 (52%), Gaps = 7/95 (7%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D K+ P QQ LI GK L+D TL+
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLS 57
Query: 61 DNKVSEDGFLVVMLSKSKTLGSAGASSAQPAHTTP 95
D + ++ L ++L L + +TTP
Sbjct: 58 DYNIQKESTLHLVLR----LRGGAKKRKKKNYTTP 88
>gi|336377749|gb|EGO18909.1| hypothetical protein SERLADRAFT_402972 [Serpula lacrymans var.
lacrymans S7.9]
Length = 78
Score = 50.8 bits (120), Expect = 6e-04, Method: Composition-based stats.
Identities = 29/74 (39%), Positives = 44/74 (59%), Gaps = 3/74 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+ SDT+ VK I+D K+ +P QQ LI GK L+D TL+
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQD---KEGFPPDQQRLIFAGKQLEDGRTLS 57
Query: 61 DNKVSEDGFLVVML 74
D + ++ L ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|324525461|gb|ADY48550.1| Polyubiquitin, partial [Ascaris suum]
Length = 263
Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 44/75 (58%), Gaps = 3/75 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSD V VK I+D K+ P QQ LI GK L+D+ TL+
Sbjct: 153 MQIFVKTLTGKTLTLEVEPSDAVQHVKAKIQD---KEGIPPDQQRLIFAGKQLEDDRTLS 209
Query: 61 DNKVSEDGFLVVMLS 75
D + ++ L ++L
Sbjct: 210 DYNIQKESTLHLVLR 224
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 43/75 (57%), Gaps = 3/75 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M+L VKTL G + V+PSDT+ VK I+D K+ P QQ LI GK L+D TL
Sbjct: 1 MQLFVKTLTGKTITLEVEPSDTIENVKVKIQD---KEGIPPDQQRLIFAGKQLEDGRTLL 57
Query: 61 DNKVSEDGFLVVMLS 75
D + ++ L ++L
Sbjct: 58 DYNIQKESTLHLVLR 72
Score = 47.0 bits (110), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 43/75 (57%), Gaps = 3/75 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+ SDT+ VK I+D K+ P QQ LI GK L+D TL+
Sbjct: 77 MQIFVKTLTGKTITLEVESSDTIENVKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLS 133
Query: 61 DNKVSEDGFLVVMLS 75
D + ++ L ++L
Sbjct: 134 DYNIQKESTLHLVLR 148
>gi|221105965|ref|XP_002169026.1| PREDICTED: AN1-type zinc finger protein 4-like [Hydra
magnipapillata]
Length = 539
Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 47/75 (62%), Gaps = 3/75 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M L +KTL G+ FE+RV P +T++++K +++++G P QQ L+ + + L+DE L
Sbjct: 1 MDLYIKTLTGTVFELRVNPFETILSIKAKLQNLEG---IPISQQHLVWHAEELEDEFCLF 57
Query: 61 DNKVSEDGFLVVMLS 75
D +S L ++L+
Sbjct: 58 DYNISSGSSLQLVLA 72
>gi|260787688|ref|XP_002588884.1| hypothetical protein BRAFLDRAFT_284180 [Branchiostoma floridae]
gi|229274055|gb|EEN44895.1| hypothetical protein BRAFLDRAFT_284180 [Branchiostoma floridae]
Length = 77
Score = 50.8 bits (120), Expect = 6e-04, Method: Composition-based stats.
Identities = 29/75 (38%), Positives = 44/75 (58%), Gaps = 3/75 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M + VKTL G EI ++P+D V +K+ +E+ K+ P QQ LI +GK + D+ T A
Sbjct: 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEE---KEGIPPPQQRLIFSGKQMNDDKTAA 57
Query: 61 DNKVSEDGFLVVMLS 75
D KV L ++L+
Sbjct: 58 DYKVQGGSVLHLVLA 72
>gi|13195690|ref|NP_077239.1| ubiquitin-40S ribosomal protein S27a precursor [Mus musculus]
gi|13592077|ref|NP_112375.1| ubiquitin-40S ribosomal protein S27a [Rattus norvegicus]
gi|76443694|ref|NP_001029037.1| ubiquitin-40S ribosomal protein S27a precursor [Mus musculus]
gi|392333172|ref|XP_003752815.1| PREDICTED: ubiquitin-40S ribosomal protein S27a-like [Rattus
norvegicus]
gi|392353337|ref|XP_003751469.1| PREDICTED: ubiquitin-40S ribosomal protein S27a-like [Rattus
norvegicus]
gi|302393751|sp|P62983.2|RS27A_MOUSE RecName: Full=Ubiquitin-40S ribosomal protein S27a; AltName:
Full=Ubiquitin carboxyl extension protein 80; Contains:
RecName: Full=Ubiquitin; Contains: RecName: Full=40S
ribosomal protein S27a; Flags: Precursor
gi|302393757|sp|P62982.2|RS27A_RAT RecName: Full=Ubiquitin-40S ribosomal protein S27a; AltName:
Full=Ubiquitin carboxyl extension protein 80; Contains:
RecName: Full=Ubiquitin; Contains: RecName: Full=40S
ribosomal protein S27a; Flags: Precursor
gi|1050756|emb|CAA57432.1| fusion protein: ubiquitin (bases 43_513); ribosomal protein S27a
(bases 217_532) [Rattus norvegicus]
gi|12805285|gb|AAH02108.1| Ribosomal protein S27A [Mus musculus]
gi|12858551|dbj|BAB31357.1| unnamed protein product [Mus musculus]
gi|37194821|gb|AAH58139.1| Ribosomal protein S27a [Rattus norvegicus]
gi|51980723|gb|AAH81446.1| Ribosomal protein S27A [Mus musculus]
gi|66570876|gb|AAH96392.1| Ribosomal protein S27A [Mus musculus]
gi|148691854|gb|EDL23801.1| mCG13441 [Mus musculus]
gi|148694516|gb|EDL26463.1| mCG15222 [Mus musculus]
gi|149044846|gb|EDL98032.1| rCG23287, isoform CRA_a [Rattus norvegicus]
gi|149044847|gb|EDL98033.1| rCG23287, isoform CRA_a [Rattus norvegicus]
Length = 156
Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 34/95 (35%), Positives = 51/95 (53%), Gaps = 7/95 (7%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D +G P QQ LI GK L+D TL+
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 61 DNKVSEDGFLVVMLSKSKTLGSAGASSAQPAHTTP 95
D + ++ L ++L L + ++TTP
Sbjct: 58 DYNIQKESTLHLVLR----LRGGAKKRKKKSYTTP 88
>gi|345800149|ref|XP_003434657.1| PREDICTED: polyubiquitin-like [Canis lupus familiaris]
Length = 180
Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 43/74 (58%), Gaps = 3/74 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D K+ P QQ LI GK L+D TL+
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLS 57
Query: 61 DNKVSEDGFLVVML 74
D + + L ++L
Sbjct: 58 DYNIQKKSTLHLIL 71
>gi|332246181|ref|XP_003272229.1| PREDICTED: ubiquitin-40S ribosomal protein S27a-like [Nomascus
leucogenys]
Length = 156
Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 34/95 (35%), Positives = 51/95 (53%), Gaps = 7/95 (7%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT VK I+D +G P QQ LI GK L+D TL+
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTTENVKAKIQDKEG---IPPDQQRLILAGKQLEDGRTLS 57
Query: 61 DNKVSEDGFLVVMLSKSKTLGSAGASSAQPAHTTP 95
D+ + ++ L ++L L + ++TTP
Sbjct: 58 DHNIQKESILHLVLR----LRGGAKKRKKKSYTTP 88
>gi|324525469|gb|ADY48551.1| Polyubiquitin, partial [Ascaris suum]
Length = 263
Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 44/75 (58%), Gaps = 3/75 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSD V VK I+D K+ P QQ LI GK L+D+ TL+
Sbjct: 153 MQIFVKTLTGKTLTLEVEPSDAVQHVKAKIQD---KEGIPPDQQRLIFAGKQLEDDRTLS 209
Query: 61 DNKVSEDGFLVVMLS 75
D + ++ L ++L
Sbjct: 210 DYNIQKESTLHLVLR 224
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 43/75 (57%), Gaps = 3/75 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M+L VKTL G + V+PSDT+ VK I+D K+ P QQ LI GK L+D TL
Sbjct: 1 MQLFVKTLTGKTITLEVEPSDTIENVKVKIQD---KEGIPPDQQRLIFAGKQLEDGRTLL 57
Query: 61 DNKVSEDGFLVVMLS 75
D + ++ L ++L
Sbjct: 58 DYNIQKESTLHLVLR 72
Score = 46.6 bits (109), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 43/75 (57%), Gaps = 3/75 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+ SDT+ VK I+D K+ P QQ LI GK L+D TL+
Sbjct: 77 MQIFVKTLTGKTITLEVESSDTIENVKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLS 133
Query: 61 DNKVSEDGFLVVMLS 75
D + ++ L ++L
Sbjct: 134 DYNIQKESTLHLVLR 148
>gi|226473056|emb|CAX71214.1| polyubiquitin [Schistosoma japonicum]
Length = 304
Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 40/122 (32%), Positives = 58/122 (47%), Gaps = 13/122 (10%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D K+ P QQ LI GK L+D TL+
Sbjct: 77 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLS 133
Query: 61 DNKVSEDGFLVVMLSKS-------KTL-GSAGASSAQPAHTTPPTTA--PSSNSTPPQEA 110
D + ++ L ++L KTL G +P+ T A P PP +
Sbjct: 134 DYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIPDKEGIPPDQQ 193
Query: 111 SV 112
+
Sbjct: 194 RL 195
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 44/75 (58%), Gaps = 3/75 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D K+ P QQ LI GK L+D TL+
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLS 57
Query: 61 DNKVSEDGFLVVMLS 75
D + ++ L ++L
Sbjct: 58 DYNIQKESTLHLVLR 72
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 44/75 (58%), Gaps = 3/75 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D K+ P QQ LI GK L+D TL+
Sbjct: 229 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLS 285
Query: 61 DNKVSEDGFLVVMLS 75
D + ++ L ++L
Sbjct: 286 DYNIQKESTLHLVLR 300
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 43/75 (57%), Gaps = 3/75 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I D K+ P QQ LI GK L+D TL+
Sbjct: 153 MQIFVKTLTGKTITLEVEPSDTIENVKAKIPD---KEGIPPDQQRLIFAGKQLEDGRTLS 209
Query: 61 DNKVSEDGFLVVMLS 75
D + ++ L ++L
Sbjct: 210 DYNIQKESTLHLVLR 224
>gi|164510092|emb|CAJ32650.1| ubiquitin [Mytilus edulis]
Length = 228
Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 41/122 (33%), Positives = 61/122 (50%), Gaps = 13/122 (10%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D K+ P QQ LI GK L+D +TL+
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQD---KEGIPPDQQSLIFAGKQLEDGSTLS 57
Query: 61 DNKVSEDGFLVVMLSKS-------KTL-GSAGASSAQPAHTTPPTTAPSSNS--TPPQEA 110
D + ++ L ++L S KTL G +P+ T A + PP +
Sbjct: 58 DYNIQKESTLHLVLRLSGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQ 117
Query: 111 SV 112
S+
Sbjct: 118 SL 119
Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 41/122 (33%), Positives = 61/122 (50%), Gaps = 13/122 (10%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D K+ P QQ LI GK L+D +TL+
Sbjct: 77 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQD---KEGIPPDQQSLIFAGKQLEDGSTLS 133
Query: 61 DNKVSEDGFLVVMLSKS-------KTL-GSAGASSAQPAHTTPPTTAPSSNS--TPPQEA 110
D + ++ L ++L S KTL G +P+ T A + PP +
Sbjct: 134 DYNIQKESTLHLVLRLSGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQ 193
Query: 111 SV 112
S+
Sbjct: 194 SL 195
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 46/77 (59%), Gaps = 3/77 (3%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D K+ P QQ L+ GK L+D +TL+
Sbjct: 153 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQD---KEGIPPDQQSLMFAGKQLEDGSTLS 209
Query: 61 DNKVSEDGFLVVMLSKS 77
D + ++ L ++L S
Sbjct: 210 DYNIQKESTLHLVLRLS 226
>gi|317134055|ref|YP_004089966.1| ubiquitin [Ruminococcus albus 7]
gi|315450517|gb|ADU24080.1| ubiquitin [Ruminococcus albus 7]
Length = 246
Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 45/74 (60%), Gaps = 3/74 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D K++ +Q LI GK L+D+ TLA
Sbjct: 27 MQIFVKTLTGKTITLDVEPSDTIENVKAKIQD---KESIAPNKQRLIFAGKQLEDDRTLA 83
Query: 61 DNKVSEDGFLVVML 74
D + ++ L ++L
Sbjct: 84 DYNIQKESTLHLVL 97
>gi|159163685|pdb|1ZGU|B Chain B, Solution Structure Of The Human Mms2-Ubiquitin Complex
Length = 76
Score = 50.8 bits (120), Expect = 6e-04, Method: Composition-based stats.
Identities = 29/74 (39%), Positives = 44/74 (59%), Gaps = 3/74 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D K+ P QQ LI G+ L+D TL+
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQD---KEGIPPDQQRLIFAGRQLEDGRTLS 57
Query: 61 DNKVSEDGFLVVML 74
D + ++ L ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|327358507|gb|AEA51100.1| ubiquitin, partial [Oryzias melastigma]
Length = 169
Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 34/95 (35%), Positives = 51/95 (53%), Gaps = 7/95 (7%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D K+ P QQ LI GK L+D TL+
Sbjct: 22 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLS 78
Query: 61 DNKVSEDGFLVVMLSKSKTLGSAGASSAQPAHTTP 95
D + ++ L ++L L + ++TTP
Sbjct: 79 DYNIQKESTLHLVLR----LRGGAKKRKKKSYTTP 109
>gi|283807117|pdb|3JVZ|X Chain X, E2~ubiquitin-Hect
gi|283807118|pdb|3JVZ|Y Chain Y, E2~ubiquitin-Hect
gi|283807123|pdb|3JW0|X Chain X, E2~ubiquitin-Hect
gi|283807124|pdb|3JW0|Y Chain Y, E2~ubiquitin-Hect
gi|400977356|pdb|4AUQ|C Chain C, Structure Of Birc7-Ubch5b-Ub Complex.
gi|400977359|pdb|4AUQ|F Chain F, Structure Of Birc7-Ubch5b-Ub Complex
Length = 81
Score = 50.8 bits (120), Expect = 6e-04, Method: Composition-based stats.
Identities = 30/74 (40%), Positives = 44/74 (59%), Gaps = 3/74 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D K+ P QQ LI GK L+D TL+
Sbjct: 6 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLS 62
Query: 61 DNKVSEDGFLVVML 74
D + ++ L ++L
Sbjct: 63 DYNIQKESTLHLVL 76
>gi|323230|gb|AAA02769.1| polyprotein [Bovine viral diarrhea virus 1-Osloss]
Length = 3975
Score = 50.8 bits (120), Expect = 6e-04, Method: Composition-based stats.
Identities = 29/74 (39%), Positives = 44/74 (59%), Gaps = 3/74 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D K+ P QQ LI GK L+D +L+
Sbjct: 1591 MQIFVKTLTGRTITLEVEPSDTIENVKAKIQD---KEGIPPDQQRLIFAGKQLEDGRSLS 1647
Query: 61 DNKVSEDGFLVVML 74
D + ++ L ++L
Sbjct: 1648 DYNIQKESTLHLVL 1661
>gi|387916118|gb|AFK11668.1| polyubiquitin-like protein [Callorhinchus milii]
Length = 381
Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 44/75 (58%), Gaps = 3/75 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D K+ P QQ LI GK L+D TL+
Sbjct: 229 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQD---KEGIPLDQQCLIFAGKQLEDGRTLS 285
Query: 61 DNKVSEDGFLVVMLS 75
D + ++ L ++L
Sbjct: 286 DYNIQKESTLHLVLR 300
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 44/75 (58%), Gaps = 3/75 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D K+ P QQ LI GK L+D TL+
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLS 57
Query: 61 DNKVSEDGFLVVMLS 75
D + ++ L ++L
Sbjct: 58 DYNIQKESTLHLVLR 72
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 44/75 (58%), Gaps = 3/75 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D K+ P QQ LI GK L+D TL+
Sbjct: 77 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLS 133
Query: 61 DNKVSEDGFLVVMLS 75
D + ++ L ++L
Sbjct: 134 DYNIQKESTLHLVLR 148
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 44/75 (58%), Gaps = 3/75 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D K+ P QQ LI GK L+D TL+
Sbjct: 305 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLS 361
Query: 61 DNKVSEDGFLVVMLS 75
D + ++ L ++L
Sbjct: 362 DYNIQKESTLHLVLR 376
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 44/75 (58%), Gaps = 3/75 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D K+ P QQ LI GK L+D TL+
Sbjct: 153 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQD---KEGIPPDQQRLIFVGKQLEDGRTLS 209
Query: 61 DNKVSEDGFLVVMLS 75
D + ++ L ++L
Sbjct: 210 DYNIQKESTLHLVLR 224
>gi|326561245|gb|ADZ95639.1| 40S ribosomal protein S31 [Nosema bombycis]
Length = 138
Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 52/101 (51%), Gaps = 10/101 (9%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D +G P QQ LI GK L+D TL+
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDNRTLS 57
Query: 61 DNKVSEDGFLVVMLSKSKTLGSAGASSAQPAHTTPPTTAPS 101
D + ++ L ++L + +++TP P+
Sbjct: 58 DYNIQKESTLHLVL-------RLRGGKKKNSYSTPKKVKPT 91
>gi|291481015|gb|ADE06486.1| putative poly-ubiquitin [Tragopogon porrifolius]
Length = 89
Score = 50.8 bits (120), Expect = 6e-04, Method: Composition-based stats.
Identities = 30/74 (40%), Positives = 43/74 (58%), Gaps = 3/74 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+ SDT+ VK I+D K+ P QQ LI GK L+D TLA
Sbjct: 12 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLA 68
Query: 61 DNKVSEDGFLVVML 74
D + ++ L ++L
Sbjct: 69 DYNIQKEATLHLVL 82
>gi|8101594|gb|AAF72586.1|AF216301_3 GP37 protein [Spodoptera litura NPV]
Length = 332
Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 44/74 (59%), Gaps = 3/74 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSD+V VK+ I D +G P QQ LI GK L+D T++
Sbjct: 1 MQIFVKTLTGKTITVDVEPSDSVETVKQRIADKEGV---PPDQQRLIFAGKQLEDSMTMS 57
Query: 61 DNKVSEDGFLVVML 74
D + ++ L ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|134105065|pdb|2O6V|D Chain D, Crystal Structure And Solution Nmr Studies Of
Lys48-Linked Tetraubiquitin At Neutral Ph
gi|134105069|pdb|2O6V|H Chain H, Crystal Structure And Solution Nmr Studies Of
Lys48-Linked Tetraubiquitin At Neutral Ph
Length = 76
Score = 50.8 bits (120), Expect = 6e-04, Method: Composition-based stats.
Identities = 29/74 (39%), Positives = 43/74 (58%), Gaps = 3/74 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D K+ P QQ LI G+ L+D TL+
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQD---KEGIPPDQQRLIFAGRQLEDGRTLS 57
Query: 61 DNKVSEDGFLVVML 74
D + + L ++L
Sbjct: 58 DYNIQRESTLHLVL 71
>gi|66808013|ref|XP_637729.1| repC-binding protein A [Dictyostelium discoideum AX4]
gi|74853451|sp|Q54LV1.1|RAD23_DICDI RecName: Full=UV excision repair protein RAD23 homolog; AltName:
Full=repC-binding protein A
gi|60466140|gb|EAL64203.1| repC-binding protein A [Dictyostelium discoideum AX4]
Length = 342
Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 24/53 (45%), Positives = 35/53 (66%), Gaps = 3/53 (5%)
Query: 142 QAASNLVAGNDLEQTIQQIMDMGGGTWDKETVTRALQAAYNNPERAVDYLYSG 194
Q +S+ G +LE TI+ I DMG + ++ V RAL+ +NN ERA++YL SG
Sbjct: 152 QQSSDFATGTELEATIKNITDMG---FARDQVLRALRLTFNNAERAIEYLVSG 201
>gi|320164491|gb|EFW41390.1| Nedd8-PA [Capsaspora owczarzaki ATCC 30864]
Length = 77
Score = 50.8 bits (120), Expect = 6e-04, Method: Composition-based stats.
Identities = 27/75 (36%), Positives = 44/75 (58%), Gaps = 3/75 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M + VKTL G EI ++P+D V +K+ +E+ K+ P QQ LI GK + D+ T A
Sbjct: 1 MLIKVKTLTGKEIEIDIEPTDRVDRIKERVEE---KEGIPPAQQRLIFGGKQMNDDKTAA 57
Query: 61 DNKVSEDGFLVVMLS 75
+ K++ L ++L+
Sbjct: 58 EYKIAGGSVLHLVLA 72
>gi|229368168|gb|ACQ59064.1| Ubiquitin [Anoplopoma fimbria]
Length = 156
Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 34/95 (35%), Positives = 51/95 (53%), Gaps = 7/95 (7%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D K+ P QQ LI GK L+D TL+
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLS 57
Query: 61 DNKVSEDGFLVVMLSKSKTLGSAGASSAQPAHTTP 95
D + ++ L ++L L + ++TTP
Sbjct: 58 DYNIQKESTLHLVLR----LRGGAKKRKKKSYTTP 88
>gi|223646258|gb|ACN09887.1| Ubiquitin [Salmo salar]
gi|223672105|gb|ACN12234.1| Ubiquitin [Salmo salar]
Length = 191
Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 44/74 (59%), Gaps = 3/74 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D K+ P QQ LI GK L+D TL+
Sbjct: 115 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLS 171
Query: 61 DNKVSEDGFLVVML 74
D + ++ L ++L
Sbjct: 172 DYNIQKESTLHLVL 185
Score = 43.1 bits (100), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 39/68 (57%), Gaps = 3/68 (4%)
Query: 7 TLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSE 66
+L G + V+PSDT+ VK I+D K+ P QQ LI GK L+D TL+D + +
Sbjct: 45 SLTGKTITLEVEPSDTIENVKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLSDYNIQK 101
Query: 67 DGFLVVML 74
+ L ++L
Sbjct: 102 ESTLHLVL 109
>gi|448933015|gb|AGE56572.1| ubiquitin-60S ribosomal protein L40 [Acanthocystis turfacea
Chlorella virus NE-JV-2]
gi|448935810|gb|AGE59359.1| ubiquitin-60S ribosomal protein L40 [Acanthocystis turfacea
Chlorella virus OR0704.3]
Length = 77
Score = 50.8 bits (120), Expect = 6e-04, Method: Composition-based stats.
Identities = 30/74 (40%), Positives = 44/74 (59%), Gaps = 3/74 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+ SDT+ AVK I+D K+ P QQ LI GK L+D TL+
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIEAVKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLS 57
Query: 61 DNKVSEDGFLVVML 74
D + ++ L ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|429964160|gb|ELA46158.1| polyubiquitin [Vavraia culicis 'floridensis']
Length = 78
Score = 50.8 bits (120), Expect = 6e-04, Method: Composition-based stats.
Identities = 29/74 (39%), Positives = 44/74 (59%), Gaps = 3/74 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D K+ P QQ LI GK L+D +L+
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTISNVKNKIKD---KEGIPPDQQRLIFAGKQLEDGRSLS 57
Query: 61 DNKVSEDGFLVVML 74
D + ++ L ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|426198671|gb|EKV48597.1| hypothetical protein AGABI2DRAFT_192160 [Agaricus bisporus var.
bisporus H97]
Length = 144
Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 44/145 (30%), Positives = 70/145 (48%), Gaps = 10/145 (6%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+ SDT+ VK I+D K+ P QQ LI GK L+D TL+
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLS 57
Query: 61 DNKVSEDGFL-VVMLSKSKTLGSAGASSAQPAHTTPPTTAPSSNSTPPQEASVPPPAPTP 119
D + ++ L +V+LS + S+ S T T+ ++N+TP +P P
Sbjct: 58 DYNIQKESTLHLVLLSVA---VSSNHRSKFLLQNTTVTSKFAANATPVFLPVLPTAGRDP 114
Query: 120 SIPASNV---TSNVTAANANSDTYG 141
+ N + + A + + YG
Sbjct: 115 VVTRHNSDQEEAEIVVARSRAMVYG 139
>gi|1762374|gb|AAB39514.1| polyubiquitin, partial [Gallus gallus]
Length = 71
Score = 50.8 bits (120), Expect = 6e-04, Method: Composition-based stats.
Identities = 30/74 (40%), Positives = 44/74 (59%), Gaps = 3/74 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D K+ P QQ LI GK L+D TL+
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLS 57
Query: 61 DNKVSEDGFLVVML 74
D + ++ L ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|5523973|gb|AAD44039.1|AF104022_1 polyprotein [Bovine viral diarrhea virus 2]
Length = 228
Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 44/75 (58%), Gaps = 3/75 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D K+ P QQ LI GK L+D TL+
Sbjct: 96 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLS 152
Query: 61 DNKVSEDGFLVVMLS 75
D + ++ L ++L
Sbjct: 153 DYNIQKESTLHLVLR 167
>gi|225705126|gb|ACO08409.1| Ubiquitin [Oncorhynchus mykiss]
Length = 156
Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 34/95 (35%), Positives = 51/95 (53%), Gaps = 7/95 (7%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D K+ P QQ LI GK L+D TL+
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLS 57
Query: 61 DNKVSEDGFLVVMLSKSKTLGSAGASSAQPAHTTP 95
D + ++ L ++L L + ++TTP
Sbjct: 58 DYNIQKESTLHLVLR----LRGGAKKRKKKSYTTP 88
>gi|402294541|gb|AFQ55252.1| URT reporter protein [URT reporter vector pKP55-M]
Length = 1401
Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 57/109 (52%), Gaps = 4/109 (3%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+ SDT+ VK I+D K+ P QQ LI G+ L+D TL+
Sbjct: 246 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQD---KEGIPPDQQRLIFAGRQLEDGRTLS 302
Query: 61 DNKVSEDGFLVVMLSKSKTLGSAGASSAQPAHTTPPTT-APSSNSTPPQ 108
D + ++ L ++L + +GA + TT AP++ + P+
Sbjct: 303 DYNIQKESTLHLVLRLRGGMHGSGAWLLPVSLVKRKTTLAPNTQTASPR 351
>gi|379771652|gb|AFD18177.1| ubiquitin C, partial [Mylabris cichorii]
Length = 204
Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 41/133 (30%), Positives = 62/133 (46%), Gaps = 16/133 (12%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D +G P QQ LI GK L+D TL+
Sbjct: 61 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 117
Query: 61 DNKVSEDGFLVVMLSKS-------KTL-GSAGASSAQPAHTTPPTTAPSSNSTPPQEASV 112
D + ++ L ++L KTL G +P+ T A + + +
Sbjct: 118 DYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVEAKIQD-----KEGI 172
Query: 113 PPPAPTPSIPASN 125
PP +P +N
Sbjct: 173 PPDQQRLILPENN 185
Score = 39.3 bits (90), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 35/59 (59%), Gaps = 3/59 (5%)
Query: 17 VQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVMLS 75
V+PSDT+ VK I+D +G P QQ LI GK L+D TL+D + ++ L ++L
Sbjct: 1 VEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 56
>gi|299473697|emb|CBN78090.1| ubiquitin UbiA [Ectocarpus siliculosus]
Length = 128
Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 44/75 (58%), Gaps = 3/75 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ KTL G + V PSDT+ VK+ I+D++G P QQ L+ K L+D TL+
Sbjct: 1 MQIFGKTLTGRTITLDVAPSDTIDGVKQTIQDLEG---IPASQQRLVFAAKQLEDGRTLS 57
Query: 61 DNKVSEDGFLVVMLS 75
D V ++ L V+LS
Sbjct: 58 DYNVEQESTLQVLLS 72
>gi|197632563|gb|ACH71005.1| ribosomal protein S27-3 [Salmo salar]
gi|209731700|gb|ACI66719.1| Ubiquitin [Salmo salar]
gi|223646226|gb|ACN09871.1| Ubiquitin [Salmo salar]
gi|223672073|gb|ACN12218.1| Ubiquitin [Salmo salar]
gi|290561194|gb|ADD37999.1| Ubiquitin [Lepeophtheirus salmonis]
gi|303660799|gb|ADM16009.1| Ubiquitin [Salmo salar]
Length = 156
Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 34/95 (35%), Positives = 51/95 (53%), Gaps = 7/95 (7%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D +G P QQ LI GK L+D TL+
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 61 DNKVSEDGFLVVMLSKSKTLGSAGASSAQPAHTTP 95
D + ++ L ++L L + ++TTP
Sbjct: 58 DYNIQKESTLHLVLR----LRGGAKKRKKKSYTTP 88
>gi|145498417|ref|XP_001435196.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124402326|emb|CAK67799.1| unnamed protein product [Paramecium tetraurelia]
Length = 369
Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 45/75 (60%), Gaps = 3/75 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ AVK I+D K+ P QQ LI GK L+D TL+
Sbjct: 1 MQIFVKTLTGKTITLDVEPSDTIDAVKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLS 57
Query: 61 DNKVSEDGFLVVMLS 75
D + ++ L ++L
Sbjct: 58 DYNIQKESTLHLVLR 72
Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 45/75 (60%), Gaps = 3/75 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ AVK I+D K+ P QQ LI GK L+D TL+
Sbjct: 217 MQIFVKTLTGKTITLDVEPSDTIDAVKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLS 273
Query: 61 DNKVSEDGFLVVMLS 75
D + ++ L ++L
Sbjct: 274 DYNIQKESTLHLVLR 288
Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 45/75 (60%), Gaps = 3/75 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ AVK I+D K+ P QQ LI GK L+D TL+
Sbjct: 293 MQIFVKTLTGKTITLDVEPSDTIDAVKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLS 349
Query: 61 DNKVSEDGFLVVMLS 75
D + ++ L ++L
Sbjct: 350 DYNIQKESTLHLVLR 364
Score = 44.7 bits (104), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 40/69 (57%), Gaps = 3/69 (4%)
Query: 7 TLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSE 66
TL G + V+PSDT+ AVK I+D K+ P QQ LI GK L+D TL+D + +
Sbjct: 147 TLTGKTITLDVEPSDTIDAVKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLSDYNIQK 203
Query: 67 DGFLVVMLS 75
+ L ++L
Sbjct: 204 ESTLHLVLR 212
Score = 37.7 bits (86), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 29/47 (61%), Gaps = 3/47 (6%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLI 47
M++ VKTL G + V+PSDT+ AVK I+D K+ P QQ LI
Sbjct: 77 MQIFVKTLTGKTITLDVEPSDTIDAVKAKIQD---KEGIPPDQQRLI 120
>gi|41055516|ref|NP_956796.1| 40S ribosomal protein S27a [Danio rerio]
gi|318884065|ref|NP_001187222.1| ubiquitin-40S ribosomal protein S27a [Ictalurus punctatus]
gi|348536082|ref|XP_003455526.1| PREDICTED: ubiquitin-40S ribosomal protein S27a-like [Oreochromis
niloticus]
gi|410900612|ref|XP_003963790.1| PREDICTED: ubiquitin-40S ribosomal protein S27a-like [Takifugu
rubripes]
gi|302393746|sp|P68200.2|RS27A_ICTPU RecName: Full=Ubiquitin-40S ribosomal protein S27a; AltName:
Full=Ubiquitin carboxyl extension protein 80; Contains:
RecName: Full=Ubiquitin; Contains: RecName: Full=40S
ribosomal protein S27a; Flags: Precursor
gi|15294071|gb|AAK95212.1|AF402838_1 40S ribosomal protein S27a [Ictalurus punctatus]
gi|33585739|gb|AAH55524.1| Zgc:66168 [Danio rerio]
gi|124300843|dbj|BAF45917.1| ribosomal protein S27a [Solea senegalensis]
gi|167860808|gb|ACA05172.1| ribosomal protein S27a [Oncorhynchus masou formosanus]
gi|182891012|gb|AAI64449.1| Zgc:66168 protein [Danio rerio]
gi|221219368|gb|ACM08345.1| Ubiquitin [Salmo salar]
gi|225707998|gb|ACO09845.1| Ubiquitin [Osmerus mordax]
gi|229366594|gb|ACQ58277.1| Ubiquitin [Anoplopoma fimbria]
gi|305690487|gb|ADM64585.1| ribosomal protein S27a [Hypophthalmichthys nobilis]
Length = 156
Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 34/95 (35%), Positives = 51/95 (53%), Gaps = 7/95 (7%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D +G P QQ LI GK L+D TL+
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 61 DNKVSEDGFLVVMLSKSKTLGSAGASSAQPAHTTP 95
D + ++ L ++L L + ++TTP
Sbjct: 58 DYNIQKESTLHLVLR----LRGGAKKRKKKSYTTP 88
>gi|302393781|sp|P62976.2|UBIQP_CRIGR RecName: Full=Polyubiquitin; Contains: RecName: Full=Ubiquitin;
Contains: RecName: Full=Ubiquitin-related 1; Contains:
RecName: Full=Ubiquitin-related 2; Flags: Precursor
gi|940395|dbj|BAA09853.1| polyubiquitin [Cricetulus sp.]
Length = 658
Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 44/75 (58%), Gaps = 3/75 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D QG P QQ LI GK L+D TL+
Sbjct: 533 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKQG---IPPDQQRLIFAGKQLEDGRTLS 589
Query: 61 DNKVSEDGFLVVMLS 75
D + ++ L ++L
Sbjct: 590 DYNIQKESTLHLVLR 604
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 44/75 (58%), Gaps = 3/75 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D K+ P QQ LI GK L+D TL+
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLS 57
Query: 61 DNKVSEDGFLVVMLS 75
D + ++ L ++L
Sbjct: 58 DYNIQKESTLHLVLR 72
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 44/75 (58%), Gaps = 3/75 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D K+ P QQ LI GK L+D TL+
Sbjct: 77 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLS 133
Query: 61 DNKVSEDGFLVVMLS 75
D + ++ L ++L
Sbjct: 134 DYNIQKESTLHLVLR 148
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 44/75 (58%), Gaps = 3/75 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D K+ P QQ LI GK L+D TL+
Sbjct: 153 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLS 209
Query: 61 DNKVSEDGFLVVMLS 75
D + ++ L ++L
Sbjct: 210 DYNIQKESTLHLVLR 224
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 44/75 (58%), Gaps = 3/75 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D K+ P QQ LI GK L+D TL+
Sbjct: 229 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLS 285
Query: 61 DNKVSEDGFLVVMLS 75
D + ++ L ++L
Sbjct: 286 DYNIQKESTLHLVLR 300
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 44/75 (58%), Gaps = 3/75 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D K+ P QQ LI GK L+D TL+
Sbjct: 305 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLS 361
Query: 61 DNKVSEDGFLVVMLS 75
D + ++ L ++L
Sbjct: 362 DYNIQKESTLHLVLR 376
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 44/75 (58%), Gaps = 3/75 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D K+ P QQ LI GK L+D TL+
Sbjct: 381 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLS 437
Query: 61 DNKVSEDGFLVVMLS 75
D + ++ L ++L
Sbjct: 438 DYNIQKESTLHLVLR 452
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 44/75 (58%), Gaps = 3/75 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D K+ P QQ LI GK L+D TL+
Sbjct: 457 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLS 513
Query: 61 DNKVSEDGFLVVMLS 75
D + ++ L ++L
Sbjct: 514 DYNIQKESTLHLVLR 528
>gi|367068743|gb|AEX13272.1| hypothetical protein CL958Contig1_06 [Pinus taeda]
gi|367068745|gb|AEX13273.1| hypothetical protein CL958Contig1_06 [Pinus taeda]
gi|367068747|gb|AEX13274.1| hypothetical protein CL958Contig1_06 [Pinus taeda]
gi|367068749|gb|AEX13275.1| hypothetical protein CL958Contig1_06 [Pinus taeda]
gi|367068751|gb|AEX13276.1| hypothetical protein CL958Contig1_06 [Pinus taeda]
gi|367068753|gb|AEX13277.1| hypothetical protein CL958Contig1_06 [Pinus taeda]
gi|367068755|gb|AEX13278.1| hypothetical protein CL958Contig1_06 [Pinus taeda]
gi|367068757|gb|AEX13279.1| hypothetical protein CL958Contig1_06 [Pinus taeda]
gi|367068759|gb|AEX13280.1| hypothetical protein CL958Contig1_06 [Pinus taeda]
gi|367068761|gb|AEX13281.1| hypothetical protein CL958Contig1_06 [Pinus taeda]
gi|367068763|gb|AEX13282.1| hypothetical protein CL958Contig1_06 [Pinus taeda]
gi|367068765|gb|AEX13283.1| hypothetical protein CL958Contig1_06 [Pinus taeda]
gi|367068767|gb|AEX13284.1| hypothetical protein CL958Contig1_06 [Pinus taeda]
gi|367068769|gb|AEX13285.1| hypothetical protein CL958Contig1_06 [Pinus taeda]
gi|367068771|gb|AEX13286.1| hypothetical protein CL958Contig1_06 [Pinus taeda]
gi|367068773|gb|AEX13287.1| hypothetical protein CL958Contig1_06 [Pinus taeda]
gi|367068775|gb|AEX13288.1| hypothetical protein CL958Contig1_06 [Pinus taeda]
gi|367068777|gb|AEX13289.1| hypothetical protein CL958Contig1_06 [Pinus taeda]
gi|367068779|gb|AEX13290.1| hypothetical protein CL958Contig1_06 [Pinus radiata]
Length = 90
Score = 50.8 bits (120), Expect = 6e-04, Method: Composition-based stats.
Identities = 30/74 (40%), Positives = 43/74 (58%), Gaps = 3/74 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+ SDT+ VK I+D K+ P QQ LI GK L+D TLA
Sbjct: 13 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQD---KEGIPPDQQRLIFAGKQLEDGRTLA 69
Query: 61 DNKVSEDGFLVVML 74
D + ++ L ++L
Sbjct: 70 DYNIQKESTLHLVL 83
>gi|348558880|ref|XP_003465244.1| PREDICTED: ubiquitin-60S ribosomal protein L40-like [Cavia
porcellus]
Length = 191
Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 44/75 (58%), Gaps = 3/75 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D K+ P QQ LI GK L+D TL+
Sbjct: 64 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLS 120
Query: 61 DNKVSEDGFLVVMLS 75
D + ++ L ++L
Sbjct: 121 DYNIQKESTLHLVLR 135
>gi|110671414|gb|ABG81958.1| putative ubiquitin/ribosomal protein S27Ae fusion protein
[Diaphorina citri]
Length = 156
Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 45/74 (60%), Gaps = 3/74 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSD++ VK I+D +G P QQ LI GK L+D+ TL+
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDSIENVKSKIQDKEG---IPPDQQRLIFAGKQLEDDRTLS 57
Query: 61 DNKVSEDGFLVVML 74
D + ++ L ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|116783760|gb|ABK23075.1| unknown [Picea sitchensis]
Length = 259
Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 33/80 (41%), Positives = 45/80 (56%), Gaps = 5/80 (6%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V SDT+ VK I+D +G P QQ LI GK L+D TLA
Sbjct: 1 MQIFVKTLSGKTITLEVDSSDTIDNVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLA 57
Query: 61 DNKVSEDG--FLVVMLSKSK 78
D + ++ +LV+ L SK
Sbjct: 58 DYNIQKESTLYLVLRLRASK 77
>gi|242044456|ref|XP_002460099.1| hypothetical protein SORBIDRAFT_02g022750 [Sorghum bicolor]
gi|241923476|gb|EER96620.1| hypothetical protein SORBIDRAFT_02g022750 [Sorghum bicolor]
Length = 139
Score = 50.8 bits (120), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 32/75 (42%), Positives = 44/75 (58%), Gaps = 3/75 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+ SDTV VK I+D +G P QQ LI GK L+DE TLA
Sbjct: 1 MQIFVKTLTGKTVTLEVESSDTVANVKAKIQDKEG---IPPDQQRLIFAGKQLEDERTLA 57
Query: 61 DNKVSEDGFLVVMLS 75
D + ++ L ++L
Sbjct: 58 DYNIQKESTLHLVLR 72
>gi|66361226|pdb|1YX5|B Chain B, Solution Structure Of S5a Uim-1UBIQUITIN COMPLEX
gi|66361228|pdb|1YX6|B Chain B, Solution Structure Of S5a Uim-2UBIQUITIN COMPLEX
Length = 98
Score = 50.8 bits (120), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 44/74 (59%), Gaps = 3/74 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D +G P QQ LI GK L+D TL+
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 61 DNKVSEDGFLVVML 74
D + ++ L ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|19073994|ref|NP_584600.1| ubiquitin [Encephalitozoon cuniculi GB-M1]
gi|303388387|ref|XP_003072428.1| ubiquitin [Encephalitozoon intestinalis ATCC 50506]
gi|51702116|sp|Q8SWD4.1|UBIQ_ENCCU RecName: Full=Ubiquitin; Flags: Precursor
gi|19068636|emb|CAD25104.1| UBIQUITIN [Encephalitozoon cuniculi GB-M1]
gi|303301568|gb|ADM11068.1| ubiquitin [Encephalitozoon intestinalis ATCC 50506]
gi|449329368|gb|AGE95641.1| ubiquitin [Encephalitozoon cuniculi]
Length = 77
Score = 50.8 bits (120), Expect = 7e-04, Method: Composition-based stats.
Identities = 29/74 (39%), Positives = 44/74 (59%), Gaps = 3/74 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSD++ VK I+D K+ P QQ LI GK L+D TL+
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDSIENVKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLS 57
Query: 61 DNKVSEDGFLVVML 74
D + ++ L ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|145351567|ref|XP_001420144.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144580377|gb|ABO98437.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 361
Score = 50.8 bits (120), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 40/74 (54%), Gaps = 3/74 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
MK+ KTL F++ + V VK + QG Y +L+H G VLKDE T+A
Sbjct: 1 MKVQFKTLTNQKFDLELDEGADVATVKAEVRKAQG---YGDEAIVLVHKGSVLKDEATIA 57
Query: 61 DNKVSEDGFLVVML 74
V+E+ F+VVM+
Sbjct: 58 SAGVTEESFVVVMV 71
>gi|109510935|ref|XP_001057026.1| PREDICTED: ubiquitin-40S ribosomal protein S27a-like [Rattus
norvegicus]
gi|392343222|ref|XP_003754825.1| PREDICTED: ubiquitin-40S ribosomal protein S27a-like [Rattus
norvegicus]
Length = 156
Score = 50.8 bits (120), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 51/95 (53%), Gaps = 7/95 (7%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + +PSDT+ VK I+D +G P +Q LI G+ L+D TL+
Sbjct: 1 MQIFVKTLTGKTLTLEAEPSDTIENVKAKIQDEEG---IPPDEQRLIFAGEQLEDGRTLS 57
Query: 61 DNKVSEDGFLVVMLSKSKTLGSAGASSAQPAHTTP 95
D + ++ L ++L L S + ++TTP
Sbjct: 58 DYNIQKESMLHLVLR----LRSGAKKRKKKSYTTP 88
>gi|67191208|ref|NP_066289.2| polyubiquitin-C [Homo sapiens]
Length = 685
Score = 50.8 bits (120), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 44/75 (58%), Gaps = 3/75 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D K+ P QQ LI GK L+D TL+
Sbjct: 153 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQD---KEGIPSDQQRLIFAGKQLEDGRTLS 209
Query: 61 DNKVSEDGFLVVMLS 75
D + ++ L ++L
Sbjct: 210 DYNIQKESTLHLVLR 224
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 44/75 (58%), Gaps = 3/75 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D K+ P QQ LI GK L+D TL+
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLS 57
Query: 61 DNKVSEDGFLVVMLS 75
D + ++ L ++L
Sbjct: 58 DYNIQKESTLHLVLR 72
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 44/75 (58%), Gaps = 3/75 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D K+ P QQ LI GK L+D TL+
Sbjct: 77 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLS 133
Query: 61 DNKVSEDGFLVVMLS 75
D + ++ L ++L
Sbjct: 134 DYNIQKESTLHLVLR 148
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 44/75 (58%), Gaps = 3/75 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D K+ P QQ LI GK L+D TL+
Sbjct: 229 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLS 285
Query: 61 DNKVSEDGFLVVMLS 75
D + ++ L ++L
Sbjct: 286 DYNIQKESTLHLVLR 300
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 44/75 (58%), Gaps = 3/75 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D K+ P QQ LI GK L+D TL+
Sbjct: 305 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLS 361
Query: 61 DNKVSEDGFLVVMLS 75
D + ++ L ++L
Sbjct: 362 DYNIQKESTLHLVLR 376
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 44/75 (58%), Gaps = 3/75 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D K+ P QQ LI GK L+D TL+
Sbjct: 381 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLS 437
Query: 61 DNKVSEDGFLVVMLS 75
D + ++ L ++L
Sbjct: 438 DYNIQKESTLHLVLR 452
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 44/75 (58%), Gaps = 3/75 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D K+ P QQ LI GK L+D TL+
Sbjct: 457 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLS 513
Query: 61 DNKVSEDGFLVVMLS 75
D + ++ L ++L
Sbjct: 514 DYNIQKESTLHLVLR 528
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 44/75 (58%), Gaps = 3/75 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D K+ P QQ LI GK L+D TL+
Sbjct: 533 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLS 589
Query: 61 DNKVSEDGFLVVMLS 75
D + ++ L ++L
Sbjct: 590 DYNIQKESTLHLVLR 604
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 44/75 (58%), Gaps = 3/75 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D K+ P QQ LI GK L+D TL+
Sbjct: 609 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLS 665
Query: 61 DNKVSEDGFLVVMLS 75
D + ++ L ++L
Sbjct: 666 DYNIQKESTLHLVLR 680
>gi|30387258|ref|NP_848337.1| ubiquitin-like protein [Choristoneura fumiferana MNPV]
gi|30270000|gb|AAP29816.1| ubiquitin-like protein [Choristoneura fumiferana MNPV]
Length = 94
Score = 50.8 bits (120), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 43/75 (57%), Gaps = 3/75 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + +P DTV VK+ I D K+ P QQ LI+ GK L+D T+A
Sbjct: 17 MQIFVKTLTGKTITVETEPGDTVGQVKQKIAD---KEGVPVDQQRLIYAGKQLEDAKTMA 73
Query: 61 DNKVSEDGFLVVMLS 75
D + ++ L ++L
Sbjct: 74 DYNIQKESTLHMVLR 88
>gi|195387970|ref|XP_002052665.1| GJ17678 [Drosophila virilis]
gi|194149122|gb|EDW64820.1| GJ17678 [Drosophila virilis]
Length = 83
Score = 50.8 bits (120), Expect = 7e-04, Method: Composition-based stats.
Identities = 29/75 (38%), Positives = 44/75 (58%), Gaps = 3/75 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M + VKTL G EI ++P+D V +K+ +E+ K+ P QQ LI +GK + D+ T A
Sbjct: 1 MLIKVKTLTGKEIEIDIEPTDKVDRIKERVEE---KEGIPPQQQRLIFSGKQMNDDKTAA 57
Query: 61 DNKVSEDGFLVVMLS 75
D KV L ++L+
Sbjct: 58 DYKVQGGSVLHLVLA 72
>gi|256087621|ref|XP_002579964.1| ubiquitin (ribosomal protein L40) [Schistosoma mansoni]
gi|3892189|gb|AAC78304.1| ubiquitin/ribosomal fusion protein [Schistosoma japonicum]
gi|226475088|emb|CAX71832.1| Ribosomal protein L40 [Schistosoma japonicum]
gi|226475090|emb|CAX71833.1| Ribosomal protein L40 [Schistosoma japonicum]
gi|226475092|emb|CAX71834.1| Ribosomal protein L40 [Schistosoma japonicum]
gi|226475094|emb|CAX71835.1| Ribosomal protein L40 [Schistosoma japonicum]
gi|226475096|emb|CAX71836.1| Ribosomal protein L40 [Schistosoma japonicum]
gi|226477046|emb|CAX78176.1| Ribosomal protein L40 [Schistosoma japonicum]
gi|226477048|emb|CAX78177.1| Ribosomal protein L40 [Schistosoma japonicum]
gi|226477052|emb|CAX78179.1| Ribosomal protein L40 [Schistosoma japonicum]
gi|226477054|emb|CAX78180.1| Ribosomal protein L40 [Schistosoma japonicum]
gi|226477056|emb|CAX78181.1| Ribosomal protein L40 [Schistosoma japonicum]
gi|226477058|emb|CAX78182.1| Ribosomal protein L40 [Schistosoma japonicum]
gi|226477060|emb|CAX78183.1| Ribosomal protein L40 [Schistosoma japonicum]
gi|226477064|emb|CAX78185.1| Ribosomal protein L40 [Schistosoma japonicum]
gi|226477066|emb|CAX78186.1| Ribosomal protein L40 [Schistosoma japonicum]
gi|226477068|emb|CAX78187.1| Ribosomal protein L40 [Schistosoma japonicum]
gi|226477070|emb|CAX78188.1| Ribosomal protein L40 [Schistosoma japonicum]
gi|226477072|emb|CAX78189.1| Ribosomal protein L40 [Schistosoma japonicum]
gi|226477074|emb|CAX78190.1| Ribosomal protein L40 [Schistosoma japonicum]
gi|226477076|emb|CAX78191.1| Ribosomal protein L40 [Schistosoma japonicum]
gi|226477078|emb|CAX78192.1| Ribosomal protein L40 [Schistosoma japonicum]
gi|238665464|emb|CAZ36203.1| ubiquitin (ribosomal protein L40), putative [Schistosoma mansoni]
Length = 128
Score = 50.8 bits (120), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 45/75 (60%), Gaps = 3/75 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+P+DT+ AVK I+D +G P QQ LI GK L+D TL+
Sbjct: 1 MQIFVKTLTGKTITLEVEPADTIEAVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 61 DNKVSEDGFLVVMLS 75
D + ++ L ++L
Sbjct: 58 DYNIQKESTLHLVLR 72
>gi|195035507|ref|XP_001989219.1| GH11603 [Drosophila grimshawi]
gi|193905219|gb|EDW04086.1| GH11603 [Drosophila grimshawi]
Length = 81
Score = 50.8 bits (120), Expect = 7e-04, Method: Composition-based stats.
Identities = 29/75 (38%), Positives = 44/75 (58%), Gaps = 3/75 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M + VKTL G EI ++P+D V +K+ +E+ K+ P QQ LI +GK + D+ T A
Sbjct: 1 MLIKVKTLTGKEIEIDIEPTDKVDRIKERVEE---KEGIPPQQQRLIFSGKQMNDDKTAA 57
Query: 61 DNKVSEDGFLVVMLS 75
D KV L ++L+
Sbjct: 58 DYKVQGGSVLHLVLA 72
>gi|15617504|ref|NP_258300.1| ubiquitin GP37 fusion protein [Spodoptera litura NPV]
gi|15553240|gb|AAL01718.1|AF325155_30 ubiquitin GP37 fusion protein [Spodoptera litura NPV]
Length = 351
Score = 50.8 bits (120), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 44/74 (59%), Gaps = 3/74 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSD+V VK+ I D +G P QQ LI GK L+D T++
Sbjct: 20 MQIFVKTLTGKTITVDVEPSDSVETVKQRIADKEG---VPPDQQRLIFAGKQLEDSMTMS 76
Query: 61 DNKVSEDGFLVVML 74
D + ++ L ++L
Sbjct: 77 DYNIQKESTLHLVL 90
>gi|69608587|emb|CAJ01880.1| ubiquitin/ribosomal protein S27Ae fusion protein [Micromalthus
debilis]
Length = 156
Score = 50.8 bits (120), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 44/75 (58%), Gaps = 3/75 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D K+ P QQ LI GK L+D TL+
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLS 57
Query: 61 DNKVSEDGFLVVMLS 75
D V ++ L ++L
Sbjct: 58 DYNVQKESTLHLVLR 72
>gi|449667349|ref|XP_002158073.2| PREDICTED: AN1-type zinc finger protein 4-like [Hydra
magnipapillata]
Length = 214
Score = 50.4 bits (119), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 42/65 (64%), Gaps = 3/65 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M L +KTL G+ FE+RV P +T++++K +++++G P QQ L+ + + L+DE L
Sbjct: 1 MDLYIKTLTGTVFELRVNPFETILSIKAKLQNLEG---IPISQQHLVWHAEELEDEFCLF 57
Query: 61 DNKVS 65
D +S
Sbjct: 58 DYNIS 62
>gi|62079638|gb|AAX61165.1| ubiquitin [Oreochromis mossambicus]
Length = 160
Score = 50.4 bits (119), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 44/74 (59%), Gaps = 3/74 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D K+ P QQ LI GK L+D TL+
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLS 57
Query: 61 DNKVSEDGFLVVML 74
D + ++ L ++L
Sbjct: 58 DYNIQKESTLHLVL 71
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 40/66 (60%), Gaps = 3/66 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D K+ +P QQ LI GK L+D TL+
Sbjct: 77 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQD---KEAFPPDQQRLIFAGKQLEDGRTLS 133
Query: 61 DNKVSE 66
D + +
Sbjct: 134 DYNIQK 139
>gi|147834511|emb|CAN71997.1| hypothetical protein VITISV_004025 [Vitis vinifera]
Length = 538
Score = 50.4 bits (119), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 38/119 (31%), Positives = 56/119 (47%), Gaps = 6/119 (5%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G ++V+ SDT+ VK I+D K+ P QQ LI GK L+D TLA
Sbjct: 1 MQIFVKTLTGKTITLKVESSDTIDNVKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLA 57
Query: 61 DNKVSEDGFLVVMLSKSKTLGSAGASSAQPAHTTPPTTAPSSNSTPPQEASVPPPAPTP 119
D + +D L ++L + G T SS++T +A + P
Sbjct: 58 DYNIQKDSTLHLVL---RLRGGMQIFVKTLTRKTITLEVESSDTTDNVKAKIQDKEGIP 113
Score = 46.6 bits (109), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 43/75 (57%), Gaps = 3/75 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+ SDT+ VK I+D K+ P QQ LI GK L+D TLA
Sbjct: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLA 209
Query: 61 DNKVSEDGFLVVMLS 75
D + ++ L ++L
Sbjct: 210 DYNIQKESTLHLVLR 224
Score = 46.6 bits (109), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 43/75 (57%), Gaps = 3/75 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+ SDT+ VK I+D K+ P QQ LI GK L+D TLA
Sbjct: 229 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLA 285
Query: 61 DNKVSEDGFLVVMLS 75
D + ++ L ++L
Sbjct: 286 DYNIQKESTLHLVLR 300
Score = 46.6 bits (109), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 43/75 (57%), Gaps = 3/75 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+ SDT+ VK I+D K+ P QQ LI GK L+D TLA
Sbjct: 305 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLA 361
Query: 61 DNKVSEDGFLVVMLS 75
D + ++ L ++L
Sbjct: 362 DYNIQKESTLHLVLR 376
Score = 46.6 bits (109), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 43/75 (57%), Gaps = 3/75 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+ SDT+ VK I+D K+ P QQ LI GK L+D TLA
Sbjct: 381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLA 437
Query: 61 DNKVSEDGFLVVMLS 75
D + ++ L ++L
Sbjct: 438 DYNIQKESTLHLVLR 452
Score = 45.4 bits (106), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 42/75 (56%), Gaps = 3/75 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+ SDT+ VK I+D K+ P QQ LI GK L+D TL
Sbjct: 457 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLV 513
Query: 61 DNKVSEDGFLVVMLS 75
D + ++ L ++L
Sbjct: 514 DYNIQKESTLHLILR 528
Score = 42.0 bits (97), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 41/75 (54%), Gaps = 3/75 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL + V+ SDT VK I+D K+ P QQ LI GK L+D TLA
Sbjct: 77 MQIFVKTLTRKTITLEVESSDTTDNVKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLA 133
Query: 61 DNKVSEDGFLVVMLS 75
D + ++ L ++L
Sbjct: 134 DYNIQKESTLHLVLR 148
>gi|403284844|ref|XP_003933762.1| PREDICTED: ubiquitin-60S ribosomal protein L40-like isoform 2
[Saimiri boliviensis boliviensis]
Length = 77
Score = 50.4 bits (119), Expect = 7e-04, Method: Composition-based stats.
Identities = 29/74 (39%), Positives = 43/74 (58%), Gaps = 3/74 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL + V+PSDT+ VK I+D K+ P QQ LI GK L+D TL+
Sbjct: 1 MQIFVKTLTSKTITLEVEPSDTIENVKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLS 57
Query: 61 DNKVSEDGFLVVML 74
D + ++ L ++L
Sbjct: 58 DYNIQKESILHLVL 71
>gi|156405092|ref|XP_001640566.1| predicted protein [Nematostella vectensis]
gi|156227701|gb|EDO48503.1| predicted protein [Nematostella vectensis]
Length = 157
Score = 50.4 bits (119), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 34/95 (35%), Positives = 50/95 (52%), Gaps = 7/95 (7%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D K+ P QQ LI GK L+D TL+
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLS 57
Query: 61 DNKVSEDGFLVVMLSKSKTLGSAGASSAQPAHTTP 95
D + ++ L ++L L + +TTP
Sbjct: 58 DYNIQKESTLHLVLR----LRGGAKKRKKKNYTTP 88
>gi|331229396|ref|XP_003327364.1| ubiquitin-60S ribosomal protein L40 fusion protein [Puccinia
graminis f. sp. tritici CRL 75-36-700-3]
gi|309306354|gb|EFP82945.1| large subunit ribosomal protein L40e [Puccinia graminis f. sp.
tritici CRL 75-36-700-3]
Length = 204
Score = 50.4 bits (119), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 43/74 (58%), Gaps = 3/74 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+ SDT+ VK I+D K+ P QQ LI GK L+D TLA
Sbjct: 77 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLA 133
Query: 61 DNKVSEDGFLVVML 74
D + ++ L ++L
Sbjct: 134 DYNIQKESTLHLVL 147
>gi|208435631|pdb|3DQV|A Chain A, Structural Insights Into Nedd8 Activation Of Cullin-Ring
Ligases: Conformational Control Of Conjugation
gi|208435634|pdb|3DQV|B Chain B, Structural Insights Into Nedd8 Activation Of Cullin-Ring
Ligases: Conformational Control Of Conjugation
Length = 81
Score = 50.4 bits (119), Expect = 7e-04, Method: Composition-based stats.
Identities = 28/73 (38%), Positives = 43/73 (58%), Gaps = 3/73 (4%)
Query: 3 LTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADN 62
+ VKTL G EI ++P+D V +K+ +E+ K+ P QQ LI++GK DE T AD
Sbjct: 8 IKVKTLTGKEIEIDIEPTDKVERIKERVEE---KEGIPPQQQRLIYSGKQXNDEKTAADY 64
Query: 63 KVSEDGFLVVMLS 75
K+ L ++L+
Sbjct: 65 KIXGGSVLHLVLA 77
>gi|294860860|gb|ADF45326.1| ubiquitin/ribosomal S27 fusion protein 2 [Eriocheir sinensis]
Length = 157
Score = 50.4 bits (119), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 34/95 (35%), Positives = 50/95 (52%), Gaps = 7/95 (7%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D +G P QQ LI GK L+D TL+
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 61 DNKVSEDGFLVVMLSKSKTLGSAGASSAQPAHTTP 95
D + ++ L ++L L + +TTP
Sbjct: 58 DYNIQKESTLHLVLR----LRGGAKKRKKKNYTTP 88
>gi|145524136|ref|XP_001447898.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124415426|emb|CAK80501.1| unnamed protein product [Paramecium tetraurelia]
Length = 637
Score = 50.4 bits (119), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 45/75 (60%), Gaps = 3/75 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ AVK I+D +G P QQ LI GK L+D TL+
Sbjct: 117 MQIFVKTLTGKTITLDVEPSDTIDAVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 173
Query: 61 DNKVSEDGFLVVMLS 75
D + ++ L ++L
Sbjct: 174 DYNIQKESTLHLVLR 188
Score = 50.4 bits (119), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 45/75 (60%), Gaps = 3/75 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ AVK I+D +G P QQ LI GK L+D TL+
Sbjct: 417 MQIFVKTLTGKTITLDVEPSDTIDAVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 473
Query: 61 DNKVSEDGFLVVMLS 75
D + ++ L ++L
Sbjct: 474 DYNIQKESTLHLVLR 488
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 45/75 (60%), Gaps = 3/75 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
+++ VKTL G + V+PSDT+ AVK I+D +G P QQ LI GK L+D TL+
Sbjct: 561 LQIFVKTLTGKTITLDVEPSDTIDAVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 617
Query: 61 DNKVSEDGFLVVMLS 75
D + ++ L ++L
Sbjct: 618 DYNIQKESTLHLVLR 632
Score = 44.3 bits (103), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 40/69 (57%), Gaps = 3/69 (4%)
Query: 7 TLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSE 66
TL G + V+PSDT+ AVK I+D +G P QQ LI GK L+D TL+D + +
Sbjct: 347 TLTGKTITLDVEPSDTIDAVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLSDYNIQK 403
Query: 67 DGFLVVMLS 75
+ L ++L
Sbjct: 404 ESTLHLVLR 412
Score = 42.4 bits (98), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 43/75 (57%), Gaps = 2/75 (2%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PS T++ + + +Q K+ P QQ LI GK L+D TL+
Sbjct: 193 MQIFVKTLTGKTITLDVEPSSTLLTLSRL--QIQDKEGIPPDQQRLIFAGKQLEDGRTLS 250
Query: 61 DNKVSEDGFLVVMLS 75
D + ++ L ++L
Sbjct: 251 DYNIQKESTLHLVLR 265
Score = 41.2 bits (95), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 24/52 (46%), Positives = 32/52 (61%), Gaps = 3/52 (5%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKV 52
M++ VKTL G + V+PSDT+ AVK I+D +G P QQ LI GK+
Sbjct: 493 MQIFVKTLTGKTITLDVEPSDTIDAVKAKIQDKEG---IPPDQQRLIFAGKL 541
>gi|306440515|pdb|3K9O|B Chain B, The Crystal Structure Of E2-25k And Ubb+1 Complex
Length = 96
Score = 50.4 bits (119), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 44/75 (58%), Gaps = 3/75 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D +G P QQ LI GK L+D TL+
Sbjct: 2 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 58
Query: 61 DNKVSEDGFLVVMLS 75
D + ++ L ++L
Sbjct: 59 DYNIQKESTLHLVLR 73
>gi|160877884|pdb|2ZCB|A Chain A, Crystal Structure Of Ubiquitin P37aP38A
gi|160877885|pdb|2ZCB|B Chain B, Crystal Structure Of Ubiquitin P37aP38A
gi|160877886|pdb|2ZCB|C Chain C, Crystal Structure Of Ubiquitin P37aP38A
Length = 76
Score = 50.4 bits (119), Expect = 7e-04, Method: Composition-based stats.
Identities = 29/74 (39%), Positives = 43/74 (58%), Gaps = 3/74 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D K+ QQ LI GK L+D TL+
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQD---KEGIAADQQRLIFAGKQLEDGRTLS 57
Query: 61 DNKVSEDGFLVVML 74
D + ++ L ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|183013804|gb|ACC38421.1| ubiquitin [Plutella xylostella]
gi|183013806|gb|ACC38422.1| ubiquitin [Plutella xylostella]
gi|214011145|gb|ACJ61341.1| ubiquitin DRM-UBI [Plutella xylostella]
Length = 76
Score = 50.4 bits (119), Expect = 8e-04, Method: Composition-based stats.
Identities = 29/74 (39%), Positives = 44/74 (59%), Gaps = 3/74 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+P+DT+ VK I+D K+ P QQ LI GK L+D TL+
Sbjct: 1 MQIFVKTLTGKTITLEVEPADTIENVKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLS 57
Query: 61 DNKVSEDGFLVVML 74
D + ++ L ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|123316118|gb|ABM74399.1| ubiquitin [Portunus pelagicus]
Length = 154
Score = 50.4 bits (119), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 34/95 (35%), Positives = 50/95 (52%), Gaps = 7/95 (7%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D +G P QQ LI GK L+D TL+
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 61 DNKVSEDGFLVVMLSKSKTLGSAGASSAQPAHTTP 95
D + ++ L ++L L + +TTP
Sbjct: 58 DYNIQKESTLHLVLR----LRGGAKKRKKKNYTTP 88
>gi|406861163|gb|EKD14218.1| putative ubiquitin / ribosomal protein S27a [Marssonina brunnea f.
sp. 'multigermtubi' MB_m1]
Length = 314
Score = 50.4 bits (119), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 50/95 (52%), Gaps = 6/95 (6%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+ SDT+ VK I+D K+ P QQ LI GK L+D TL+
Sbjct: 159 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQD---KEGIPPDQQRLIFAGKQLEDGRTLS 215
Query: 61 DNKVSEDGFLVVMLSKSKTLGSAGASSAQPAHTTP 95
D + ++ L ++L + G + +TTP
Sbjct: 216 DYNIQKESTLHLVL---RLRGGMAKKRKKKVYTTP 247
>gi|395536787|ref|XP_003770393.1| PREDICTED: polyubiquitin-C-like, partial [Sarcophilus harrisii]
Length = 243
Score = 50.4 bits (119), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 44/75 (58%), Gaps = 3/75 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D K+ P QQ LI GK L+D TL+
Sbjct: 130 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLS 186
Query: 61 DNKVSEDGFLVVMLS 75
D + ++ L ++L
Sbjct: 187 DYNIQKESTLHLVLR 201
Score = 40.4 bits (93), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 36/61 (59%), Gaps = 3/61 (4%)
Query: 15 IRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVML 74
+ V+PSDT+ VK I+D K+ P QQ LI GK L+D TL+D + ++ L ++L
Sbjct: 68 LEVEPSDTIENVKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVL 124
Query: 75 S 75
Sbjct: 125 R 125
>gi|188572494|gb|ACD65153.1| putative ubiquitin/40S ribosomal protein RPS27A fusion protein
[Phoronis muelleri]
Length = 156
Score = 50.4 bits (119), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 34/95 (35%), Positives = 50/95 (52%), Gaps = 7/95 (7%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D +G P QQ LI GK L+D TL+
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 61 DNKVSEDGFLVVMLSKSKTLGSAGASSAQPAHTTP 95
D + ++ L ++L L + +TTP
Sbjct: 58 DYNIQKESTLHLVLR----LRGGAKKRKKKNYTTP 88
>gi|510473|emb|CAA52416.1| polyubiquitin [Artemia franciscana]
Length = 697
Score = 50.4 bits (119), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 44/75 (58%), Gaps = 3/75 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D QG P QQ LI GK L+D TL+
Sbjct: 229 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKQG---IPPDQQRLIFAGKQLEDGRTLS 285
Query: 61 DNKVSEDGFLVVMLS 75
D + ++ L ++L
Sbjct: 286 DYNIQKESTLHLVLR 300
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 44/75 (58%), Gaps = 3/75 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D K+ P QQ LI GK L+D TL+
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLS 57
Query: 61 DNKVSEDGFLVVMLS 75
D + ++ L ++L
Sbjct: 58 DYNIQKESTLHLVLR 72
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 44/75 (58%), Gaps = 3/75 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D K+ P QQ LI GK L+D TL+
Sbjct: 77 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLS 133
Query: 61 DNKVSEDGFLVVMLS 75
D + ++ L ++L
Sbjct: 134 DYNIQKESTLHLVLR 148
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 44/75 (58%), Gaps = 3/75 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D K+ P QQ LI GK L+D TL+
Sbjct: 153 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLS 209
Query: 61 DNKVSEDGFLVVMLS 75
D + ++ L ++L
Sbjct: 210 DYNIQKESTLHLVLR 224
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 44/75 (58%), Gaps = 3/75 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D K+ P QQ LI GK L+D TL+
Sbjct: 305 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLS 361
Query: 61 DNKVSEDGFLVVMLS 75
D + ++ L ++L
Sbjct: 362 DYNIQKESTLHLVLR 376
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 44/75 (58%), Gaps = 3/75 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D K+ P QQ LI GK L+D TL+
Sbjct: 381 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLS 437
Query: 61 DNKVSEDGFLVVMLS 75
D + ++ L ++L
Sbjct: 438 DYNIQKESTLHLVLR 452
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 44/75 (58%), Gaps = 3/75 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D K+ P QQ LI GK L+D TL+
Sbjct: 457 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLS 513
Query: 61 DNKVSEDGFLVVMLS 75
D + ++ L ++L
Sbjct: 514 DYNIQKESTLHLVLR 528
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 44/75 (58%), Gaps = 3/75 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D K+ P QQ LI GK L+D TL+
Sbjct: 533 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLS 589
Query: 61 DNKVSEDGFLVVMLS 75
D + ++ L ++L
Sbjct: 590 DYNIQKESTLHLVLR 604
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 44/75 (58%), Gaps = 3/75 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D K+ P QQ LI GK L+D TL+
Sbjct: 609 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLS 665
Query: 61 DNKVSEDGFLVVMLS 75
D + ++ L ++L
Sbjct: 666 DYNIQKESTLHLVLR 680
>gi|145524134|ref|XP_001447897.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124415425|emb|CAK80500.1| unnamed protein product [Paramecium tetraurelia]
Length = 358
Score = 50.4 bits (119), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 40/140 (28%), Positives = 63/140 (45%), Gaps = 12/140 (8%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ AVK I+D K+ P QQ LI GK L+D TL+
Sbjct: 50 MQIFVKTLTGKTITLDVEPSDTIDAVKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLS 106
Query: 61 DNKVSEDGFLVVMLSKS----KTLGSAGASSAQPAHTTPPTTAPSSNSTPPQEASVPPPA 116
D + ++ L ++L T + A +P+ T A + + +PP
Sbjct: 107 DYNIQKESTLHLVLRLRGGILLTWKNHAALDVEPSDTIDAVKAKIQD-----KEGIPPDQ 161
Query: 117 PTPSIPASNVTSNVTAANAN 136
+ T ++ N
Sbjct: 162 QRLIFAGKQLEDGRTLSDYN 181
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 45/74 (60%), Gaps = 3/74 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ AVK I+D K+ P QQ LI GK L+D TL+
Sbjct: 198 MQIFVKTLTGKTITLDVEPSDTIDAVKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLS 254
Query: 61 DNKVSEDGFLVVML 74
D + ++ L ++L
Sbjct: 255 DYNIQKESTLHLVL 268
Score = 42.0 bits (97), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 37/134 (27%), Positives = 58/134 (43%), Gaps = 16/134 (11%)
Query: 11 SHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFL 70
+H + V+PSDT+ AVK I+D K+ P QQ LI GK L+D TL+D + ++ L
Sbjct: 132 NHAALDVEPSDTIDAVKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTL 188
Query: 71 VVMLSKS-------KTL-GSAGASSAQPAHTTPPTTAPSSNSTPPQEASVPPPAPTPSIP 122
++L KTL G +P+ T A + + +PP
Sbjct: 189 HLVLRLRGGMQIFVKTLTGKTITLDVEPSDTIDAVKAKIQD-----KEGIPPDQQRLIFA 243
Query: 123 ASNVTSNVTAANAN 136
+ T ++ N
Sbjct: 244 GKQLEDGRTLSDYN 257
>gi|119624910|gb|EAX04505.1| ubiquitin B, isoform CRA_d [Homo sapiens]
Length = 116
Score = 50.4 bits (119), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 44/75 (58%), Gaps = 3/75 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D K+ P QQ LI GK L+D TL+
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLS 57
Query: 61 DNKVSEDGFLVVMLS 75
D + ++ L ++L
Sbjct: 58 DYNIQKESTLHLVLR 72
>gi|164510088|emb|CAJ32648.1| ubiquitin [Chorocaris chacei]
Length = 76
Score = 50.4 bits (119), Expect = 8e-04, Method: Composition-based stats.
Identities = 31/77 (40%), Positives = 45/77 (58%), Gaps = 3/77 (3%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D K+ P QQ LI GK L+D TL+
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQD---KEGIPPDQQSLIFAGKQLEDGRTLS 57
Query: 61 DNKVSEDGFLVVMLSKS 77
D + ++ L ++L S
Sbjct: 58 DYNIQKESTLHLVLRLS 74
>gi|339232978|ref|XP_003381606.1| ubiquitin family protein [Trichinella spiralis]
gi|316979561|gb|EFV62340.1| ubiquitin family protein [Trichinella spiralis]
Length = 315
Score = 50.4 bits (119), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 44/75 (58%), Gaps = 3/75 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDTV VK I+D K+ P QQ LI GK L+D TL+
Sbjct: 143 MQIFVKTLTGKTITLEVEPSDTVENVKGKIQD---KEGIPPDQQRLIFAGKQLEDSRTLS 199
Query: 61 DNKVSEDGFLVVMLS 75
D + ++ L ++L
Sbjct: 200 DYNIQKESTLHLVLR 214
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 44/75 (58%), Gaps = 3/75 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D K+ P QQ LI GK L+D TL+
Sbjct: 67 MQIFVKTLTGKTITLEVEPSDTIENVKGKIQD---KEGIPPDQQRLIFAGKQLEDGRTLS 123
Query: 61 DNKVSEDGFLVVMLS 75
D + ++ L ++L
Sbjct: 124 DYNIQKESTLHLVLR 138
Score = 38.9 bits (89), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 35/59 (59%), Gaps = 3/59 (5%)
Query: 17 VQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVMLS 75
V+PSDT+ VK I+D K+ P QQ LI GK L+D TL+D + ++ L ++L
Sbjct: 7 VEPSDTIENVKGKIQD---KEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 62
>gi|5523971|gb|AAD44038.1|AF104021_1 polyprotein [Bovine viral diarrhea virus 2]
Length = 177
Score = 50.4 bits (119), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 44/75 (58%), Gaps = 3/75 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D K+ P QQ LI GK L+D TL+
Sbjct: 45 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLS 101
Query: 61 DNKVSEDGFLVVMLS 75
D + ++ L ++L
Sbjct: 102 DYNIQKESTLHLVLR 116
>gi|125742521|gb|ABN54483.1| putative ubiquitin/ribosomal protein S27Ae fusion protein
[Oncopeltus fasciatus]
Length = 156
Score = 50.4 bits (119), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 44/75 (58%), Gaps = 3/75 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D +G P QQ LI GK L+D TL+
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 61 DNKVSEDGFLVVMLS 75
D + ++ L ++L
Sbjct: 58 DYNIQKESTLHLVLR 72
>gi|18071662|gb|AAL55470.1| ubiquitin/ribosomal protein S27a fusion protein [Branchiostoma
belcheri tsingtauense]
Length = 156
Score = 50.4 bits (119), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 34/95 (35%), Positives = 50/95 (52%), Gaps = 7/95 (7%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D +G P QQ LI GK L+D TL+
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 61 DNKVSEDGFLVVMLSKSKTLGSAGASSAQPAHTTP 95
D + ++ L ++L L + +TTP
Sbjct: 58 DYNIQKESTLHLVLR----LRGGAKKRKKKNYTTP 88
>gi|402294566|gb|AFQ55276.1| URT reporter protein [URT cloning vector pKP77]
Length = 361
Score = 50.4 bits (119), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 49/87 (56%), Gaps = 5/87 (5%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+ SDT+ VK I+D +G P QQ LI G+ L+D TL+
Sbjct: 246 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEG---IPPDQQRLIFAGRQLEDGRTLS 302
Query: 61 DNKVSEDG--FLVVMLSKSKTLGSAGA 85
D + ++ LV+ L + LG +G+
Sbjct: 303 DYNIQKESTLHLVLRLRGGRDLGLSGS 329
>gi|384253187|gb|EIE26662.1| ubiquitin [Coccomyxa subellipsoidea C-169]
Length = 77
Score = 50.4 bits (119), Expect = 8e-04, Method: Composition-based stats.
Identities = 28/75 (37%), Positives = 42/75 (56%), Gaps = 3/75 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M + VKTL G EI ++PSDT+ VK+ +E+ K+ P QQ LI GK + D+ T
Sbjct: 1 MMIKVKTLTGKEIEIDIEPSDTIERVKERVEE---KEGIPPIQQRLIFAGKQMNDDKTAK 57
Query: 61 DNKVSEDGFLVVMLS 75
D + L ++L+
Sbjct: 58 DYNIEGGSVLHLVLA 72
>gi|328899962|gb|AEB54653.1| ubiquitin [Procambarus clarkii]
Length = 154
Score = 50.4 bits (119), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 34/95 (35%), Positives = 50/95 (52%), Gaps = 7/95 (7%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D +G P QQ LI GK L+D TL+
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 61 DNKVSEDGFLVVMLSKSKTLGSAGASSAQPAHTTP 95
D + ++ L ++L L + +TTP
Sbjct: 58 DYNIQKESTLHLVLR----LRGGAKKRKKKNYTTP 88
>gi|336268456|ref|XP_003348993.1| hypothetical protein SMAC_02014 [Sordaria macrospora k-hell]
Length = 84
Score = 50.4 bits (119), Expect = 8e-04, Method: Composition-based stats.
Identities = 32/88 (36%), Positives = 52/88 (59%), Gaps = 5/88 (5%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
MK+T K LK F + ++P++TV + I + +G + Q LI++GK+LKDE T+
Sbjct: 1 MKVTFKDLKQQKFTLEIEPTETVG--QGEISEERG---WAPELQKLIYSGKILKDEETVE 55
Query: 61 DNKVSEDGFLVVMLSKSKTLGSAGASSA 88
K+ E GF+V +++K KT A S+
Sbjct: 56 SYKIEEKGFVVCVVNKPKTTAPKPAESS 83
>gi|385843206|gb|AFI80900.1| ubiquitin/ribosomal protein S27 precursor [Crassostrea gigas]
Length = 156
Score = 50.4 bits (119), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 34/95 (35%), Positives = 50/95 (52%), Gaps = 7/95 (7%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D +G P QQ LI GK L+D TL+
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 61 DNKVSEDGFLVVMLSKSKTLGSAGASSAQPAHTTP 95
D + ++ L ++L L + +TTP
Sbjct: 58 DYNIQKESTLHLVLR----LRGGAKKRKKKNYTTP 88
>gi|88192954|pdb|2FCS|A Chain A, X-Ray Crystal Structure Of A Chemically Synthesized
[l-Gln35]ubiquitin With A Cubic Space Group
gi|88192955|pdb|2FCS|B Chain B, X-Ray Crystal Structure Of A Chemically Synthesized
[l-Gln35]ubiquitin With A Cubic Space Group
Length = 76
Score = 50.4 bits (119), Expect = 8e-04, Method: Composition-based stats.
Identities = 29/74 (39%), Positives = 44/74 (59%), Gaps = 3/74 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
+++ VKTL G + V+PSDT+ VK I+D K+ P QQ LI GK L+D TL+
Sbjct: 1 LQIFVKTLTGKTITLEVEPSDTIENVKAKIQD---KEQIPPDQQRLIFAGKQLEDGRTLS 57
Query: 61 DNKVSEDGFLVVML 74
D + ++ L ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>gi|356927786|gb|AET42576.1| polyubiquitin [Emiliania huxleyi virus 202]
Length = 80
Score = 50.4 bits (119), Expect = 8e-04, Method: Composition-based stats.
Identities = 29/74 (39%), Positives = 44/74 (59%), Gaps = 3/74 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D K+ P QQ LI GK L+D TL+
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIDNVKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLS 57
Query: 61 DNKVSEDGFLVVML 74
D + ++ + ++L
Sbjct: 58 DYNIQKESNIHLVL 71
>gi|260766535|gb|ACX50289.1| ubiquitin [Scylla paramamosain]
Length = 154
Score = 50.4 bits (119), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 34/95 (35%), Positives = 50/95 (52%), Gaps = 7/95 (7%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D +G P QQ LI GK L+D TL+
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 61 DNKVSEDGFLVVMLSKSKTLGSAGASSAQPAHTTP 95
D + ++ L ++L L + +TTP
Sbjct: 58 DYNIQKESTLHLVLR----LRGGAKKRKKKNYTTP 88
>gi|94378076|ref|XP_001002242.1| PREDICTED: ubiquitin-40S ribosomal protein S27a-like [Mus
musculus]
Length = 156
Score = 50.4 bits (119), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 34/95 (35%), Positives = 51/95 (53%), Gaps = 7/95 (7%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D K+ P QQ LI GK L+D TL+
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIGNVKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLS 57
Query: 61 DNKVSEDGFLVVMLSKSKTLGSAGASSAQPAHTTP 95
D + ++ L ++L L + ++TTP
Sbjct: 58 DYNIQKESTLHLVLR----LRGGAKKRKKKSYTTP 88
>gi|426376564|ref|XP_004055067.1| PREDICTED: NEDD8 [Gorilla gorilla gorilla]
Length = 77
Score = 50.4 bits (119), Expect = 8e-04, Method: Composition-based stats.
Identities = 27/71 (38%), Positives = 43/71 (60%), Gaps = 3/71 (4%)
Query: 5 VKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKV 64
+KTL G EI ++P+D V +K+ +E+ K+ P QQ LI++GK + DE T AD K+
Sbjct: 1 MKTLTGKEIEIDIEPTDKVERIKERVEE---KEGIPPQQQRLIYSGKQMNDEKTAADYKI 57
Query: 65 SEDGFLVVMLS 75
L ++L+
Sbjct: 58 LGGSVLHLVLA 68
>gi|76155444|gb|AAX26732.2| SJCHGC08803 protein [Schistosoma japonicum]
Length = 193
Score = 50.4 bits (119), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 39/109 (35%), Positives = 52/109 (47%), Gaps = 9/109 (8%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M + ++TL GS F++RV P++TV++VK I+ G P QQ LI L D L
Sbjct: 3 MGIFIETLTGSSFKVRVSPTETVVSVKFEIQRAGG---IPITQQHLIWQNNELDDHCCLK 59
Query: 61 DNKVSEDGFLVVMLSKSKTLGSAGASSAQPAHTT----PPTTAPSSNST 105
D +SE L ++LS G A P T P TT P ST
Sbjct: 60 DYSISEGSTLRLVLSLRG--GPLNAPRTPPLRLTPIHLPKTTLPPFTST 106
>gi|9629963|ref|NP_046181.1| ubiquitin-like protein [Orgyia pseudotsugata MNPV]
gi|464989|sp|Q05120.1|UBIL_NPVOP RecName: Full=Ubiquitin-like protein; Flags: Precursor
gi|7439566|pir||T10294 ubiquitin-like protein - Orgyia pseudotsugata nuclear
polyhedrosis virus
gi|222221|dbj|BAA02639.1| ubiquitin [Orgyia pseudotsugata single capsid
nuclopolyhedrovirus]
gi|1911271|gb|AAC59024.1| ubiquitin-like protein [Orgyia pseudotsugata MNPV]
Length = 93
Score = 50.4 bits (119), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 43/75 (57%), Gaps = 3/75 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + +P DTV VK+ I D K+ P QQ LI+ GK L+D TLA
Sbjct: 1 MQIFVKTLTGKTITVETEPGDTVGQVKQKIAD---KEGVPVDQQRLIYAGKQLEDAQTLA 57
Query: 61 DNKVSEDGFLVVMLS 75
D + ++ L ++L
Sbjct: 58 DYNIQKESTLHMVLR 72
>gi|395513211|ref|XP_003760822.1| PREDICTED: ubiquitin-60S ribosomal protein L40 [Sarcophilus
harrisii]
Length = 182
Score = 50.4 bits (119), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 44/75 (58%), Gaps = 3/75 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D K+ P QQ LI GK L+D TL+
Sbjct: 55 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLS 111
Query: 61 DNKVSEDGFLVVMLS 75
D + ++ L ++L
Sbjct: 112 DYNIQKESTLHLVLR 126
>gi|149287148|gb|ABR23473.1| ubiquitin/40S ribosomal protein S27a [Ornithodoros parkeri]
Length = 156
Score = 50.4 bits (119), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 34/95 (35%), Positives = 50/95 (52%), Gaps = 7/95 (7%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D +G P QQ LI GK L+D TL+
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 61 DNKVSEDGFLVVMLSKSKTLGSAGASSAQPAHTTP 95
D + ++ L ++L L + +TTP
Sbjct: 58 DYNIQKESTLHLVLR----LRGGAKKRKKKNYTTP 88
>gi|70934446|ref|XP_738448.1| ubiquitin/ribosomal fusion protein Uba52 [Plasmodium chabaudi
chabaudi]
gi|56514677|emb|CAH75434.1| ubiquitin/ribosomal fusion protein uba52 homologue, putative
[Plasmodium chabaudi chabaudi]
Length = 76
Score = 50.4 bits (119), Expect = 8e-04, Method: Composition-based stats.
Identities = 29/70 (41%), Positives = 41/70 (58%), Gaps = 3/70 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D K+ P QQ LI GK L+D TL+
Sbjct: 1 MQIFVKTLTGKTITLDVEPSDTIENVKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLS 57
Query: 61 DNKVSEDGFL 70
D + ++ L
Sbjct: 58 DYNIQKESTL 67
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.310 0.126 0.360
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,528,035,502
Number of Sequences: 23463169
Number of extensions: 204771442
Number of successful extensions: 2208728
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 1567
Number of HSP's successfully gapped in prelim test: 8332
Number of HSP's that attempted gapping in prelim test: 2126639
Number of HSP's gapped (non-prelim): 61565
length of query: 274
length of database: 8,064,228,071
effective HSP length: 140
effective length of query: 134
effective length of database: 9,074,351,707
effective search space: 1215963128738
effective search space used: 1215963128738
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 76 (33.9 bits)