BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 023989
(274 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q84L33|RD23A_ARATH Putative DNA repair protein RAD23-1 OS=Arabidopsis thaliana
GN=RAD23-1 PE=2 SV=3
Length = 371
Score = 347 bits (891), Expect = 4e-95, Method: Compositional matrix adjust.
Identities = 177/264 (67%), Positives = 212/264 (80%), Gaps = 8/264 (3%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
MKLTVKTLKGSHFEIRV PSDT+MAVKKNIED QGKDNYPCGQQLLIHNGKVLKDET+L
Sbjct: 1 MKLTVKTLKGSHFEIRVLPSDTIMAVKKNIEDSQGKDNYPCGQQLLIHNGKVLKDETSLV 60
Query: 61 DNKVSEDGFLVVMLSKSKTLGSAGASSAQPAHTTPPTTAPSSNSTPPQEASVPPPAPTPS 120
+NKV+E+GFLVVMLSKSK+ GSAG +S Q + + P +A +S++ P + P +
Sbjct: 61 ENKVTEEGFLVVMLSKSKSGGSAGQASVQTSSVSQPVSATTSSTKP----AAPSTTQSSP 116
Query: 121 IPASNVTSNVTAANANSDTYGQAASNLVAGNDLEQTIQQIMDMGGGTWDKETVTRALQAA 180
+PAS + + A A +DTYGQAAS LV+G+ LEQ +QQIM+MGGG+WDKETVTRAL+AA
Sbjct: 117 VPASPIPAQEQPA-AQTDTYGQAASTLVSGSSLEQMVQQIMEMGGGSWDKETVTRALRAA 175
Query: 181 YNNPERAVDYLYSGIPETAEVAVPVAHFPASQAAETGAAGAAPVSGVPNSSPLNMFPQET 240
YNNPERAVDYLYSGIP+TAEVAVPV P +Q A +GAA AP SG PNSSPL++FPQET
Sbjct: 176 YNNPERAVDYLYSGIPQTAEVAVPV---PEAQIAGSGAAPVAPASGGPNSSPLDLFPQET 232
Query: 241 LSGAPAGGLGSLDFLRNNQQVWSL 264
++ A +G LG+L+FLRNN Q L
Sbjct: 233 VAAAGSGDLGTLEFLRNNDQFQQL 256
>sp|Q84L32|RD23B_ARATH Putative DNA repair protein RAD23-2 OS=Arabidopsis thaliana
GN=RAD23-2 PE=2 SV=2
Length = 368
Score = 306 bits (785), Expect = 8e-83, Method: Compositional matrix adjust.
Identities = 169/267 (63%), Positives = 197/267 (73%), Gaps = 17/267 (6%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
MKLTVKTLKGSHFEIRV P+DT+MAVKKNIED Q KDNYPCGQQLLIHNGKVLKDETTL
Sbjct: 1 MKLTVKTLKGSHFEIRVLPTDTIMAVKKNIEDSQSKDNYPCGQQLLIHNGKVLKDETTLV 60
Query: 61 DNKVSEDGFLVVMLSKSKTLGSAGASSAQPAHTTPPTTAPSSNSTPPQEASVPPPAPTPS 120
+NKV+E+GFLVVMLSKSKT SAG SS QP TT T + ++ + P S+ +
Sbjct: 61 ENKVTEEGFLVVMLSKSKTASSAGPSSTQPTSTTTSTISSTTLAAPSTTQSI-------A 113
Query: 121 IPASNVTSNVTAANANSDTYGQAASNLVAGNDLEQTIQQIMDMGGGTWDKETVTRALQAA 180
+PASN T A SDTYGQAAS LV+G+ +EQ +QQIM+MGGG+WDKETVTRAL+AA
Sbjct: 114 VPASNSTPVQEQPTAQSDTYGQAASTLVSGSSIEQMVQQIMEMGGGSWDKETVTRALRAA 173
Query: 181 YNNPERAVDYLYSGIPETAEVAVPVAHFPASQAAETGAAG---AAPVSGVPNSSPLNMFP 237
YNNPERAVDYLYSGIPET + PA+ + G+ A P SG PNSSPL++FP
Sbjct: 174 YNNPERAVDYLYSGIPETVTI-------PATNLSGVGSGRELTAPPPSGGPNSSPLDLFP 226
Query: 238 QETLSGAPAGGLGSLDFLRNNQQVWSL 264
QE +S A G LG+L+FLR N Q L
Sbjct: 227 QEAVSDAAGGDLGTLEFLRGNDQFQQL 253
>sp|Q84L31|RD23C_ARATH Putative DNA repair protein RAD23-3 OS=Arabidopsis thaliana
GN=RAD23-3 PE=2 SV=2
Length = 419
Score = 250 bits (638), Expect = 9e-66, Method: Compositional matrix adjust.
Identities = 149/306 (48%), Positives = 195/306 (63%), Gaps = 46/306 (15%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
MK+ VKTLKG+HFEI V+P D+V+ VKKNIE VQG D YP +Q+LIH GKVLKDETT+
Sbjct: 1 MKIFVKTLKGTHFEIEVKPEDSVVDVKKNIESVQGADVYPAAKQMLIHQGKVLKDETTIE 60
Query: 61 DNKVSEDGFLVVMLSKSK------TLGSAGASSAQ--PAHTTPPTTAPSSNST------- 105
+NKV+E+ F+V+M++KSK + SAG S A+ P T+ P+ +P + ++
Sbjct: 61 ENKVAENSFIVIMMNKSKPASAAASSASAGTSQAKSIPPSTSQPSISPQTPASVSAPVAP 120
Query: 106 ------------------PPQEASVPPPAPTP-SIPASNVTSNVTAANANSDTYGQAASN 146
+ + P P P P +I +S + + D YGQAASN
Sbjct: 121 APTRPPPPAPTPTPAPVAATETVTTPIPEPVPATISSSTPAPDSAPVGSQGDVYGQAASN 180
Query: 147 LVAGNDLEQTIQQIMDMGGGTWDKETVTRALQAAYNNPERAVDYLYSGIPETAEVAVPVA 206
L AG++LE TIQQI+DMGGGTWD+ETV AL+AA+NNPERAV+YLY+GIPE AEV PVA
Sbjct: 181 LAAGSNLESTIQQILDMGGGTWDRETVVLALRAAFNNPERAVEYLYTGIPEQAEVP-PVA 239
Query: 207 HFPASQA------AETGAAGAAPVSGVPNSSPLNMFPQ--ETLSGAPAGGLGSLDFLRNN 258
PAS A+T AAP SG PN++PL++FPQ + G P G G+LDFLRN+
Sbjct: 240 RPPASAGQPANPPAQTQQPAAAPASG-PNANPLDLFPQGLPNVGGNP--GAGTLDFLRNS 296
Query: 259 QQVWSL 264
QQ +L
Sbjct: 297 QQFQAL 302
>sp|Q84L30|RD23D_ARATH Putative DNA repair protein RAD23-4 OS=Arabidopsis thaliana
GN=RAD23-4 PE=2 SV=2
Length = 378
Score = 234 bits (598), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 142/282 (50%), Positives = 185/282 (65%), Gaps = 35/282 (12%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
MK+ VKTL GS+FEI V+P+D V VK IE V+G + YP +Q+LIH GKVLKDETTL
Sbjct: 1 MKIFVKTLSGSNFEIEVKPADKVSDVKTAIETVKGAE-YPAAKQMLIHQGKVLKDETTLE 59
Query: 61 DNKVSEDGFLVVMLSKSKTLGSAGASSAQPAHTTPPTTAPSSNSTPPQEASVPP-PAPTP 119
+N V E+ F+V+MLSK+K +GAS+A +AP+ ++T PQ + P APT
Sbjct: 60 ENNVVENSFIVIMLSKTKA-SPSGASTA---------SAPAPSATQPQTVATPQVSAPTA 109
Query: 120 SIPA-----SNVTSNVTAANANSDTYGQAASNLVAGNDLEQTIQQIMDMGGGTWDKETVT 174
S+P + + TAA+ +D YGQAASNLVAG LE T+QQI+DMGGG+WD++TV
Sbjct: 110 SVPVPTSGTATAAAPATAASVQTDVYGQAASNLVAGTTLESTVQQILDMGGGSWDRDTVV 169
Query: 175 RALQAAYNNPERAVDYLYSGIPETAEVAVPVAHFPASQAAETGAAGAAPV---------- 224
RAL+AA+NNPERAV+YLYSGIP AE+ PVA PA TG A P+
Sbjct: 170 RALRAAFNNPERAVEYLYSGIPAQAEIP-PVAQAPA-----TGEQAANPLAQPQQAAAPA 223
Query: 225 --SGVPNSSPLNMFPQETLSGAPAGGLGSLDFLRNNQQVWSL 264
+G PN++PLN+FPQ + G G+LDFLRN+QQ +L
Sbjct: 224 AATGGPNANPLNLFPQGMPAADAGAGAGNLDFLRNSQQFQAL 265
>sp|Q40742|RAD23_ORYSJ Probable DNA repair protein RAD23 OS=Oryza sativa subsp. japonica
GN=RAD23 PE=1 SV=2
Length = 392
Score = 228 bits (581), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 134/279 (48%), Positives = 178/279 (63%), Gaps = 14/279 (5%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
MK++VKTLKGS F+I V + V VK+ IE QG+ YP QQ+LIH GKVLKD+TTL
Sbjct: 1 MKISVKTLKGSTFQIEVDSAQKVADVKRIIETTQGQHIYPAEQQMLIHQGKVLKDDTTLD 60
Query: 61 DNKVSEDGFLVVMLSKSK-TLGSAGASSAQPAHTTPPT----TAPSSNS--TPPQEASVP 113
+NKV E+ FLV+ML + K + SA A+S P++ PPT AP+S + P V
Sbjct: 61 ENKVLENSFLVIMLRQGKGSSSSAPATSKAPSNQAPPTQTVPAAPASQAPVAPATTVPVT 120
Query: 114 PPAPTPSIPASNVTSNVTAANANSDTYGQAASNLVAGNDLEQTIQQIMDMGGGTWDKETV 173
APTP+ AS + A ++ +D YGQA SNLVAG++LE TIQ I++MGGG WD++ V
Sbjct: 121 VSAPTPTATASPAPA--VAVSSEADNYGQATSNLVAGSNLEATIQSILEMGGGIWDRDIV 178
Query: 174 TRALQAAYNNPERAVDYLYSGIPETAEVAVPVAHF----PASQAAETGAAGAAPVSGVPN 229
AL AA+NNPERAV+YLYSG+PE ++ VP P + T A + +S PN
Sbjct: 179 LHALSAAFNNPERAVEYLYSGVPEQMDIPVPPPSIQPANPTQASQATQPAAPSILSSGPN 238
Query: 230 SSPLNMFPQETLSGA-PAGGLGSLDFLRNNQQVWSLLCC 267
+SPL++FPQ + + A GLG+LD LRNN Q +LL
Sbjct: 239 ASPLDLFPQALPNASTDAAGLGNLDALRNNAQFRTLLSL 277
>sp|P54725|RD23A_HUMAN UV excision repair protein RAD23 homolog A OS=Homo sapiens
GN=RAD23A PE=1 SV=1
Length = 363
Score = 127 bits (320), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 91/274 (33%), Positives = 141/274 (51%), Gaps = 46/274 (16%)
Query: 3 LTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADN 62
+T+KTL+ F+IR++P +TV +K+ IE +G+D +P Q LI+ GK+L D+ + D
Sbjct: 5 ITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDY 64
Query: 63 KVSEDGFLVVMLSKSKTLGSAGASSAQPAHTTPPTTAPSSNSTPPQEA---SVPPPA--- 116
++ E F+VVM++K+K AG ++ P +P SS S PP S PPPA
Sbjct: 65 RIDEKNFVVVMVTKTK----AGQGTSAPPEASPTAAPESSTSFPPAPTSGMSHPPPAARE 120
Query: 117 -PTPSIPASNVTS-----NVTAANANSDTYGQAASNLVAGNDLEQTIQQIMDMGGGTWDK 170
+PS ++ TS ++ +S AAS LV G++ E + +IM MG +++
Sbjct: 121 DKSPSEESAPTTSPESVSGSVPSSGSSGREEDAASTLVTGSEYETMLTEIMSMG---YER 177
Query: 171 ETVTRALQAAYNNPERAVDYLYSGIPETAEVAVPVAHFPASQAAETGAAGAAPVSGVPNS 230
E V AL+A+YNNP RAV+YL +GIP + E E G+ + VS P +
Sbjct: 178 ERVVAALRASYNNPHRAVEYLLTGIPGSPE-------------PEHGSVQESQVSEQPAT 224
Query: 231 SPLNMFPQETLSGAPAGGLGSLDFLRNNQQVWSL 264
A G L+FLR+ Q ++
Sbjct: 225 E--------------AAGENPLEFLRDQPQFQNM 244
>sp|P54727|RD23B_HUMAN UV excision repair protein RAD23 homolog B OS=Homo sapiens
GN=RAD23B PE=1 SV=1
Length = 409
Score = 127 bits (320), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 86/258 (33%), Positives = 128/258 (49%), Gaps = 49/258 (18%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++T+KTL+ F+I + P +TV A+K+ IE +GKD +P Q LI+ GK+L D+T L
Sbjct: 1 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALK 60
Query: 61 DNKVSEDGFLVVMLSKSKTLGSAGASSAQ------------------------------- 89
+ K+ E F+VVM++K K + + ++ Q
Sbjct: 61 EYKIDEKNFVVVMVTKPKAVSTPAPATTQQSAPASTTAVTSSTTTTVAQAPTPVPALAPT 120
Query: 90 --PAHTTPPTTAPSSNSTP----PQEASVPPPAPTPSIPASNVTSNVTAANANSDTYGQA 143
PA TP + SS P QE PA TP + T + + ++ S+ + A
Sbjct: 121 STPASITPASATASSEPAPASAAKQEKPAEKPAETPVATSPTATDSTSGDSSRSNLFEDA 180
Query: 144 ASNLVAGNDLEQTIQQIMDMGGGTWDKETVTRALQAAYNNPERAVDYLYSGIP---ETAE 200
S LV G E + +IM MG +++E V AL+A++NNP+RAV+YL GIP E+
Sbjct: 181 TSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIPGDRESQA 237
Query: 201 VAVPVAHFPASQAAETGA 218
V P QAA TGA
Sbjct: 238 VVDP------PQAASTGA 249
>sp|P54728|RD23B_MOUSE UV excision repair protein RAD23 homolog B OS=Mus musculus
GN=Rad23b PE=1 SV=2
Length = 416
Score = 126 bits (317), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 88/254 (34%), Positives = 133/254 (52%), Gaps = 42/254 (16%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++T+KTL+ F+I + P +TV A+K+ IE +GKD +P Q LI+ GK+L D+T L
Sbjct: 1 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILSDDTALK 60
Query: 61 DNKVSEDGFLVVMLSKSKTLGSAGASSAQPAHT--------------------------- 93
+ K+ E F+VVM++K K + +A ++ QP+ T
Sbjct: 61 EYKIDEKNFVVVMVTKPKAVTTAVPATTQPSSTPSPTAVSSSPAVAAAQAPAPTPALPPT 120
Query: 94 -TPPTTAPSS---NSTP-PQEASVP-----PPAPTPSIPASNVTSNVTAANANSDTYGQA 143
TP +TAP+S +S P P A+ P PA TP + + + ++ S+ + A
Sbjct: 121 STPASTAPASTTASSEPAPAGATQPEKPAEKPAQTPVLTSPAPADSTPGDSSRSNLFEDA 180
Query: 144 ASNLVAGNDLEQTIQQIMDMGGGTWDKETVTRALQAAYNNPERAVDYLYSGIPETAEVAV 203
S LV G E + +IM MG +++E V AL+A++NNP+RAV+YL GIP E
Sbjct: 181 TSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIPGDRESQA 237
Query: 204 PVAHFPASQAAETG 217
V P QA TG
Sbjct: 238 VVD--PPPQAVSTG 249
>sp|A3KMV2|RD23A_BOVIN UV excision repair protein RAD23 homolog A OS=Bos taurus GN=RAD23A
PE=2 SV=1
Length = 362
Score = 125 bits (313), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 77/204 (37%), Positives = 120/204 (58%), Gaps = 15/204 (7%)
Query: 3 LTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADN 62
+T+KTL+ F+IR++P +TV +K+ IE +G+D +P Q LI+ GK+L D+ + D
Sbjct: 5 ITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDY 64
Query: 63 KVSEDGFLVVMLSKSKTL-GSAGASSAQPAHTTPPTTAPSSNSTPPQEASVPPPA----P 117
++ E F+VVM++K+KT G++ S A P T P ++ S S P S PPP
Sbjct: 65 RIDEKNFVVVMVTKAKTSPGTSVPSEASPTAT--PESSTSFPSAPASGMSHPPPTAREDK 122
Query: 118 TPSIPASNVTS-----NVTAANANSDTYGQAASNLVAGNDLEQTIQQIMDMGGGTWDKET 172
+PS ++ TS ++ + AAS LV G++ E + +IM MG +++E
Sbjct: 123 SPSEESAPTTSPESVSGSVPSSGSGGREEDAASTLVTGSEYETMLTEIMSMG---YERER 179
Query: 173 VTRALQAAYNNPERAVDYLYSGIP 196
V AL+A+YNNP RAV+YL +GIP
Sbjct: 180 VVAALRASYNNPHRAVEYLLTGIP 203
>sp|Q4KMA2|RD23B_RAT UV excision repair protein RAD23 homolog B OS=Rattus norvegicus
GN=Rad23b PE=1 SV=1
Length = 415
Score = 124 bits (311), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 86/254 (33%), Positives = 126/254 (49%), Gaps = 42/254 (16%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++T+KTL+ F+I + P +TV A+K+ IE +GKD +P Q LI+ GK+L D+T L
Sbjct: 1 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILSDDTALK 60
Query: 61 DNKVSEDGFLVVMLSKSKTLGSA---------------------------------GASS 87
+ K+ E F+VVM++K K + SA A +
Sbjct: 61 EYKIDEKNFVVVMVTKPKAVTSAVPATTQQSSSPSTTTVSSSPAAAVAQAPAPTPALAPT 120
Query: 88 AQPAHTTPPTTAPSSNSTP----PQEASVPPPAPTPSIPASNVTSNVTAANANSDTYGQA 143
+ PA TTP +T SS P E PA TP + + + ++ S+ + A
Sbjct: 121 STPASTTPASTTASSEPAPTGATQPEKPAEKPAQTPVLTSPAPADSTPGDSSRSNLFEDA 180
Query: 144 ASNLVAGNDLEQTIQQIMDMGGGTWDKETVTRALQAAYNNPERAVDYLYSGIPETAEVAV 203
S LV G E + +IM MG +++E V AL+A++NNP+RAV+YL GIP E
Sbjct: 181 TSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIPGDRESQA 237
Query: 204 PVAHFPASQAAETG 217
V P QA TG
Sbjct: 238 VVD--PPPQAVSTG 249
>sp|Q29RK4|RD23B_BOVIN UV excision repair protein RAD23 homolog B OS=Bos taurus GN=RAD23B
PE=2 SV=1
Length = 408
Score = 119 bits (299), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 94/301 (31%), Positives = 144/301 (47%), Gaps = 51/301 (16%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M +T+KTL+ F+I + P +TV A+K+ IE +GKD +P Q LI+ GK+L D+T L
Sbjct: 1 MLVTLKTLQQQTFKIDIDPDETVRALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALK 60
Query: 61 DNKVSEDGFLVVMLSKSKTLGSAGASSAQPAHTTPPTT---------------------- 98
+ K+ E F+VVM++K K + + ++ Q +++ TT
Sbjct: 61 EYKIDEKNFVVVMVTKPKAVTTPAPATTQQSNSAATTTVSSSTAPAVTQAPAPAPASAPT 120
Query: 99 --------APSSNSTPP-------QEASVPPPAPTPSIPASNVTSNVTAANANSDTYGQA 143
AP++ S+ P QE P TP T + + ++ S+ + A
Sbjct: 121 PTPVSVTPAPTTASSEPAPASAAKQEKPAERPVETPVATTPTSTDSTSGDSSRSNLFEDA 180
Query: 144 ASNLVAGNDLEQTIQQIMDMGGGTWDKETVTRALQAAYNNPERAVDYLYSGIPETAEVAV 203
S LV G E + +IM MG +++E V AL+A++NNP+RAV+YL GIP E
Sbjct: 181 TSALVTGQSYENMVTEIMSMG---YEREQVIAALRASFNNPDRAVEYLLMGIPGDRESQA 237
Query: 204 PVAHFPASQAAETGAAGAAPVSGVPNSSPLNMFPQETLSGAPAGGLGSLDFLRNNQQVWS 263
V PA A+ AP S V ++ T S +GG L+FLRN Q
Sbjct: 238 VVDPPPA-------ASTGAPQSSVAAAAATTTATTTTTS---SGG-HPLEFLRNQPQFQQ 286
Query: 264 L 264
+
Sbjct: 287 M 287
>sp|P54726|RD23A_MOUSE UV excision repair protein RAD23 homolog A OS=Mus musculus
GN=Rad23a PE=1 SV=2
Length = 363
Score = 117 bits (294), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 75/206 (36%), Positives = 115/206 (55%), Gaps = 19/206 (9%)
Query: 3 LTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADN 62
+T+KTL+ F+IR++P +TV +K+ IE +G+D +P Q LI+ GK+L D+ + +
Sbjct: 5 ITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIKEY 64
Query: 63 KVSEDGFLVVMLSKSKTLGSAGASSAQPAHTTPPTTAPSSNSTPPQEA---SVPPPA--- 116
+ E F+VVM++K+K AG P +P S PP A S PPP
Sbjct: 65 HIDEKNFVVVMVTKAK----AGQGIPAPPEASPTAVPEPSTPFPPVLASGMSHPPPTSRE 120
Query: 117 -PTPSIPASNVTS-----NVTAANANSDTYGQAASNLVAGNDLEQTIQQIMDMGGGTWDK 170
+PS ++ TS ++ +S AAS LV G++ E + +IM MG +++
Sbjct: 121 DKSPSEESTTTTSPESISGSVPSSGSSGREEDAASTLVTGSEYETMLTEIMSMG---YER 177
Query: 171 ETVTRALQAAYNNPERAVDYLYSGIP 196
E V AL+A+YNNP RAV+YL +GIP
Sbjct: 178 ERVVAALRASYNNPHRAVEYLLTGIP 203
>sp|O74803|RHP23_SCHPO UV excision repair protein rhp23 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=rhp23 PE=1 SV=1
Length = 368
Score = 90.5 bits (223), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 64/204 (31%), Positives = 107/204 (52%), Gaps = 23/204 (11%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M LT K L+ F I +DT ++ K E +Q + NY +Q LI++G++L D+ T+
Sbjct: 1 MNLTFKNLQQQKFVISDVSADTKISELK--EKIQTQQNYEVERQKLIYSGRILADDKTVG 58
Query: 61 DNKVSEDGFLVVMLSKSKTLGSAGASSAQPAHTTPPTTAPSSNSTPPQEASVPPPAPTPS 120
+ + E F+V M+S+ KT + +TP + A + + P AP+ +
Sbjct: 59 EYNIKEQDFIVCMVSRPKT-----------STSTPKSAASPAPNPPASVPEKKVEAPSST 107
Query: 121 IPASNVTSNVTAANA--NSDTYGQA-----ASNLVAGNDLEQTIQQIMDMGGGTWDKETV 173
+ S T+ AA A N DT + A+ L G ++ +++MG +++ V
Sbjct: 108 VAESTSTTQTVAAAAPSNPDTTATSEAPIDANTLAVGAQRNVAVENMVEMG---YERSEV 164
Query: 174 TRALQAAYNNPERAVDYLYSGIPE 197
RA++AA+NNP+RAV+YL +GIPE
Sbjct: 165 ERAMRAAFNNPDRAVEYLLTGIPE 188
>sp|P32628|RAD23_YEAST UV excision repair protein RAD23 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=RAD23 PE=1 SV=1
Length = 398
Score = 83.6 bits (205), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 61/206 (29%), Positives = 103/206 (50%), Gaps = 27/206 (13%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPC--GQQLLIHNGKVLKDETT 58
+ LT K K + ++PS+T++ K + + C Q LI++GKVL+D T
Sbjct: 2 VSLTFKNFKKEKVPLDLEPSNTILETKTKL-----AQSISCEESQIKLIYSGKVLQDSKT 56
Query: 59 LADNKVSEDGFLVVMLSKSKTLGSAGASSAQPAHTTPPTTAPSSNSTPPQEASVPPPAPT 118
+++ + + +V M+S+ K+ + T P AP S +TP +E S +P+
Sbjct: 57 VSECGLKDGDQVVFMVSQKKSTKT---------KVTEPPIAPESATTPGRENSTEA-SPS 106
Query: 119 PSIPASNVTSNVTAANANSD-------TYGQAASNLVAGNDLEQTIQQIMDMGGGTWDKE 171
A+ + + + T + V G + +TI++IM+MG + +E
Sbjct: 107 TDASAAPAATAPEGSQPQEEQTATTERTESASTPGFVVGTERNETIERIMEMG---YQRE 163
Query: 172 TVTRALQAAYNNPERAVDYLYSGIPE 197
V RAL+AA+NNP+RAV+YL GIPE
Sbjct: 164 EVERALRAAFNNPDRAVEYLLMGIPE 189
>sp|Q4PLJ0|NEDD8_RABIT NEDD8 OS=Oryctolagus cuniculus GN=NEDD8 PE=3 SV=1
Length = 81
Score = 53.9 bits (128), Expect = 1e-06, Method: Composition-based stats.
Identities = 29/75 (38%), Positives = 45/75 (60%), Gaps = 3/75 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M + VKTL G EI ++P+D V +K+ +E+ K+ P QQ LI++GK + DE T A
Sbjct: 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEE---KEGIPPQQQRLIYSGKQMNDEKTAA 57
Query: 61 DNKVSEDGFLVVMLS 75
D K+ L ++L+
Sbjct: 58 DYKILGGSVLHLVLA 72
>sp|Q15843|NEDD8_HUMAN NEDD8 OS=Homo sapiens GN=NEDD8 PE=1 SV=1
Length = 81
Score = 53.9 bits (128), Expect = 1e-06, Method: Composition-based stats.
Identities = 29/75 (38%), Positives = 45/75 (60%), Gaps = 3/75 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M + VKTL G EI ++P+D V +K+ +E+ K+ P QQ LI++GK + DE T A
Sbjct: 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEE---KEGIPPQQQRLIYSGKQMNDEKTAA 57
Query: 61 DNKVSEDGFLVVMLS 75
D K+ L ++L+
Sbjct: 58 DYKILGGSVLHLVLA 72
>sp|P61282|NEDD8_BOVIN NEDD8 OS=Bos taurus GN=NEDD8 PE=3 SV=1
Length = 81
Score = 53.9 bits (128), Expect = 1e-06, Method: Composition-based stats.
Identities = 29/75 (38%), Positives = 45/75 (60%), Gaps = 3/75 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M + VKTL G EI ++P+D V +K+ +E+ K+ P QQ LI++GK + DE T A
Sbjct: 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEE---KEGIPPQQQRLIYSGKQMNDEKTAA 57
Query: 61 DNKVSEDGFLVVMLS 75
D K+ L ++L+
Sbjct: 58 DYKILGGSVLHLVLA 72
>sp|Q71UE8|NEDD8_RAT NEDD8 OS=Rattus norvegicus GN=Nedd8 PE=1 SV=1
Length = 81
Score = 52.8 bits (125), Expect = 3e-06, Method: Composition-based stats.
Identities = 27/64 (42%), Positives = 40/64 (62%), Gaps = 3/64 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M + VKTL G EI ++P+D V +K+ +E+ K+ P QQ LI++GK + DE T A
Sbjct: 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEE---KEGIPPQQQRLIYSGKQMNDEKTAA 57
Query: 61 DNKV 64
D K+
Sbjct: 58 DYKI 61
>sp|P29595|NEDD8_MOUSE NEDD8 OS=Mus musculus GN=Nedd8 PE=1 SV=2
Length = 81
Score = 52.8 bits (125), Expect = 3e-06, Method: Composition-based stats.
Identities = 27/64 (42%), Positives = 40/64 (62%), Gaps = 3/64 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M + VKTL G EI ++P+D V +K+ +E+ K+ P QQ LI++GK + DE T A
Sbjct: 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEE---KEGIPPQQQRLIYSGKQMNDEKTAA 57
Query: 61 DNKV 64
D K+
Sbjct: 58 DYKI 61
>sp|P0CH27|RL402_TRYCR Ubiquitin-60S ribosomal protein L40 OS=Trypanosoma cruzi PE=2 SV=1
Length = 356
Score = 52.0 bits (123), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 54/207 (26%), Positives = 82/207 (39%), Gaps = 32/207 (15%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+ SDT+ VK I+D K+ P QQ LI GK L+D TLA
Sbjct: 153 MQIFVKTLTGKTIALEVESSDTIENVKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLA 209
Query: 61 DNKVSEDGFLVVMLSKS-------KTL-GSAGASSAQPAHTTPPTTAPSSNSTPPQEASV 112
D + ++ L ++L KTL G A + + T A + + +
Sbjct: 210 DYNIQKESTLHLVLRLRGGMQIFVKTLTGKTIALEVESSDTIENVKAKIQD-----KEGI 264
Query: 113 PPPAPTPSIPASNVTSNVTAANANSDTYGQAASNLVAGNDLEQTIQQIMDMGGGTWDKET 172
PP + T A+ N E T+ ++ + GG E
Sbjct: 265 PPDQQRLIFAGKQLEDGRTLADYNIQK--------------ESTLHLVLRLRGGVM--EP 308
Query: 173 VTRALQAAYNNPERAVDYLYSGIPETA 199
AL YN ++ Y+ +P A
Sbjct: 309 TLEALAKKYNWEKKVCRRCYARLPVRA 335
Score = 47.4 bits (111), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 43/75 (57%), Gaps = 3/75 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+ SDT+ VK I+D K+ P QQ LI GK L+D TLA
Sbjct: 1 MQIFVKTLTGKTIALEVESSDTIENVKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLA 57
Query: 61 DNKVSEDGFLVVMLS 75
D + ++ L ++L
Sbjct: 58 DYNIQKESTLHLVLR 72
Score = 47.4 bits (111), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 43/75 (57%), Gaps = 3/75 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+ SDT+ VK I+D K+ P QQ LI GK L+D TLA
Sbjct: 77 MQIFVKTLTGKTIALEVESSDTIENVKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLA 133
Query: 61 DNKVSEDGFLVVMLS 75
D + ++ L ++L
Sbjct: 134 DYNIQKESTLHLVLR 148
>sp|P62975|UBIQ_RABIT Ubiquitin OS=Oryctolagus cuniculus PE=1 SV=1
Length = 76
Score = 51.6 bits (122), Expect = 6e-06, Method: Composition-based stats.
Identities = 30/74 (40%), Positives = 44/74 (59%), Gaps = 3/74 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D K+ P QQ LI GK L+D TL+
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLS 57
Query: 61 DNKVSEDGFLVVML 74
D + ++ L ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>sp|P68197|UBIQ_CERCA Ubiquitin OS=Ceratitis capitata PE=1 SV=1
Length = 76
Score = 51.6 bits (122), Expect = 6e-06, Method: Composition-based stats.
Identities = 30/74 (40%), Positives = 44/74 (59%), Gaps = 3/74 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D K+ P QQ LI GK L+D TL+
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLS 57
Query: 61 DNKVSEDGFLVVML 74
D + ++ L ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>sp|Q865C5|UBIQ_CAMDR Ubiquitin OS=Camelus dromedarius PE=3 SV=2
Length = 76
Score = 51.6 bits (122), Expect = 6e-06, Method: Composition-based stats.
Identities = 30/74 (40%), Positives = 44/74 (59%), Gaps = 3/74 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D K+ P QQ LI GK L+D TL+
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLS 57
Query: 61 DNKVSEDGFLVVML 74
D + ++ L ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>sp|Q9VJ33|NEDD8_DROME NEDD8 OS=Drosophila melanogaster GN=Nedd8 PE=1 SV=1
Length = 84
Score = 51.2 bits (121), Expect = 8e-06, Method: Composition-based stats.
Identities = 29/75 (38%), Positives = 44/75 (58%), Gaps = 3/75 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M + VKTL G EI ++P+D V +K+ +E+ K+ P QQ LI +GK + D+ T A
Sbjct: 1 MLIKVKTLTGKEIEIDIEPTDKVDRIKERVEE---KEGIPPQQQRLIFSGKQMNDDKTAA 57
Query: 61 DNKVSEDGFLVVMLS 75
D KV L ++L+
Sbjct: 58 DYKVQGGSVLHLVLA 72
>sp|A4QND0|UBL4A_XENTR Ubiquitin-like protein 4A OS=Xenopus tropicalis GN=ubl4a PE=2
SV=1
Length = 148
Score = 51.2 bits (121), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 29/60 (48%), Positives = 36/60 (60%), Gaps = 3/60 (5%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M+LTVK LKG I+V DTV+AVK+ +E+ K P QQ L+ GK L DE LA
Sbjct: 1 MQLTVKALKGKEANIQVSEGDTVLAVKRLVEE---KLKVPVSQQRLLFRGKALADEHCLA 57
>sp|P79781|RS27A_CHICK Ubiquitin-40S ribosomal protein S27a OS=Gallus gallus GN=RPS27A
PE=2 SV=3
Length = 156
Score = 51.2 bits (121), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 34/95 (35%), Positives = 51/95 (53%), Gaps = 7/95 (7%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D +G P QQ LI GK L+D TL+
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 61 DNKVSEDGFLVVMLSKSKTLGSAGASSAQPAHTTP 95
D + ++ L ++L L + ++TTP
Sbjct: 58 DYNIQKESTLHLVLR----LRGGAKKRKKKSYTTP 88
>sp|P62979|RS27A_HUMAN Ubiquitin-40S ribosomal protein S27a OS=Homo sapiens GN=RPS27A
PE=1 SV=2
Length = 156
Score = 51.2 bits (121), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 34/95 (35%), Positives = 51/95 (53%), Gaps = 7/95 (7%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D +G P QQ LI GK L+D TL+
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 61 DNKVSEDGFLVVMLSKSKTLGSAGASSAQPAHTTP 95
D + ++ L ++L L + ++TTP
Sbjct: 58 DYNIQKESTLHLVLR----LRGGAKKRKKKSYTTP 88
>sp|P62978|RS27A_CAVPO Ubiquitin-40S ribosomal protein S27a OS=Cavia porcellus GN=RPS27A
PE=1 SV=2
Length = 156
Score = 51.2 bits (121), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 34/95 (35%), Positives = 51/95 (53%), Gaps = 7/95 (7%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D +G P QQ LI GK L+D TL+
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 61 DNKVSEDGFLVVMLSKSKTLGSAGASSAQPAHTTP 95
D + ++ L ++L L + ++TTP
Sbjct: 58 DYNIQKESTLHLVLR----LRGGAKKRKKKSYTTP 88
>sp|P62992|RS27A_BOVIN Ubiquitin-40S ribosomal protein S27a OS=Bos taurus GN=RPS27A PE=1
SV=2
Length = 156
Score = 51.2 bits (121), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 34/95 (35%), Positives = 51/95 (53%), Gaps = 7/95 (7%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D +G P QQ LI GK L+D TL+
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 61 DNKVSEDGFLVVMLSKSKTLGSAGASSAQPAHTTP 95
D + ++ L ++L L + ++TTP
Sbjct: 58 DYNIQKESTLHLVLR----LRGGAKKRKKKSYTTP 88
>sp|P62982|RS27A_RAT Ubiquitin-40S ribosomal protein S27a OS=Rattus norvegicus
GN=Rps27a PE=1 SV=2
Length = 156
Score = 50.8 bits (120), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/95 (35%), Positives = 51/95 (53%), Gaps = 7/95 (7%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D +G P QQ LI GK L+D TL+
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 61 DNKVSEDGFLVVMLSKSKTLGSAGASSAQPAHTTP 95
D + ++ L ++L L + ++TTP
Sbjct: 58 DYNIQKESTLHLVLR----LRGGAKKRKKKSYTTP 88
>sp|P62983|RS27A_MOUSE Ubiquitin-40S ribosomal protein S27a OS=Mus musculus GN=Rps27a
PE=1 SV=2
Length = 156
Score = 50.8 bits (120), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/95 (35%), Positives = 51/95 (53%), Gaps = 7/95 (7%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D +G P QQ LI GK L+D TL+
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 61 DNKVSEDGFLVVMLSKSKTLGSAGASSAQPAHTTP 95
D + ++ L ++L L + ++TTP
Sbjct: 58 DYNIQKESTLHLVLR----LRGGAKKRKKKSYTTP 88
>sp|Q54LV1|RAD23_DICDI UV excision repair protein RAD23 homolog OS=Dictyostelium
discoideum GN=rcbA PE=1 SV=1
Length = 342
Score = 50.8 bits (120), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/53 (45%), Positives = 35/53 (66%), Gaps = 3/53 (5%)
Query: 142 QAASNLVAGNDLEQTIQQIMDMGGGTWDKETVTRALQAAYNNPERAVDYLYSG 194
Q +S+ G +LE TI+ I DMG + ++ V RAL+ +NN ERA++YL SG
Sbjct: 152 QQSSDFATGTELEATIKNITDMG---FARDQVLRALRLTFNNAERAIEYLVSG 201
>sp|P62976|UBIQP_CRIGR Polyubiquitin OS=Cricetulus griseus PE=2 SV=2
Length = 658
Score = 50.8 bits (120), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 44/75 (58%), Gaps = 3/75 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D QG P QQ LI GK L+D TL+
Sbjct: 533 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKQG---IPPDQQRLIFAGKQLEDGRTLS 589
Query: 61 DNKVSEDGFLVVMLS 75
D + ++ L ++L
Sbjct: 590 DYNIQKESTLHLVLR 604
Score = 49.7 bits (117), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 44/75 (58%), Gaps = 3/75 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D K+ P QQ LI GK L+D TL+
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLS 57
Query: 61 DNKVSEDGFLVVMLS 75
D + ++ L ++L
Sbjct: 58 DYNIQKESTLHLVLR 72
Score = 49.7 bits (117), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 44/75 (58%), Gaps = 3/75 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D K+ P QQ LI GK L+D TL+
Sbjct: 77 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLS 133
Query: 61 DNKVSEDGFLVVMLS 75
D + ++ L ++L
Sbjct: 134 DYNIQKESTLHLVLR 148
Score = 49.7 bits (117), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 44/75 (58%), Gaps = 3/75 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D K+ P QQ LI GK L+D TL+
Sbjct: 153 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLS 209
Query: 61 DNKVSEDGFLVVMLS 75
D + ++ L ++L
Sbjct: 210 DYNIQKESTLHLVLR 224
Score = 49.7 bits (117), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 44/75 (58%), Gaps = 3/75 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D K+ P QQ LI GK L+D TL+
Sbjct: 229 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLS 285
Query: 61 DNKVSEDGFLVVMLS 75
D + ++ L ++L
Sbjct: 286 DYNIQKESTLHLVLR 300
Score = 49.7 bits (117), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 44/75 (58%), Gaps = 3/75 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D K+ P QQ LI GK L+D TL+
Sbjct: 305 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLS 361
Query: 61 DNKVSEDGFLVVMLS 75
D + ++ L ++L
Sbjct: 362 DYNIQKESTLHLVLR 376
Score = 49.7 bits (117), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 44/75 (58%), Gaps = 3/75 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D K+ P QQ LI GK L+D TL+
Sbjct: 381 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLS 437
Query: 61 DNKVSEDGFLVVMLS 75
D + ++ L ++L
Sbjct: 438 DYNIQKESTLHLVLR 452
Score = 49.7 bits (117), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 44/75 (58%), Gaps = 3/75 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D K+ P QQ LI GK L+D TL+
Sbjct: 457 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLS 513
Query: 61 DNKVSEDGFLVVMLS 75
D + ++ L ++L
Sbjct: 514 DYNIQKESTLHLVLR 528
>sp|P68200|RS27A_ICTPU Ubiquitin-40S ribosomal protein S27a OS=Ictalurus punctatus
GN=rps27a PE=2 SV=2
Length = 156
Score = 50.8 bits (120), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/95 (35%), Positives = 51/95 (53%), Gaps = 7/95 (7%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D +G P QQ LI GK L+D TL+
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 61 DNKVSEDGFLVVMLSKSKTLGSAGASSAQPAHTTP 95
D + ++ L ++L L + ++TTP
Sbjct: 58 DYNIQKESTLHLVLR----LRGGAKKRKKKSYTTP 88
>sp|Q8SWD4|UBIQ_ENCCU Ubiquitin OS=Encephalitozoon cuniculi (strain GB-M1)
GN=ECU02_0740i PE=1 SV=1
Length = 77
Score = 50.8 bits (120), Expect = 1e-05, Method: Composition-based stats.
Identities = 29/74 (39%), Positives = 44/74 (59%), Gaps = 3/74 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSD++ VK I+D K+ P QQ LI GK L+D TL+
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDSIENVKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLS 57
Query: 61 DNKVSEDGFLVVML 74
D + ++ L ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>sp|Q05120|UBIL_NPVOP Ubiquitin-like protein OS=Orgyia pseudotsugata multicapsid
polyhedrosis virus GN=V-UBI PE=3 SV=1
Length = 93
Score = 50.4 bits (119), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 43/75 (57%), Gaps = 3/75 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + +P DTV VK+ I D K+ P QQ LI+ GK L+D TLA
Sbjct: 1 MQIFVKTLTGKTITVETEPGDTVGQVKQKIAD---KEGVPVDQQRLIYAGKQLEDAQTLA 57
Query: 61 DNKVSEDGFLVVMLS 75
D + ++ L ++L
Sbjct: 58 DYNIQKESTLHMVLR 72
>sp|P69317|UBIQ_LUPPO Ubiquitin OS=Lupinus polyphyllus PE=3 SV=2
Length = 77
Score = 50.1 bits (118), Expect = 2e-05, Method: Composition-based stats.
Identities = 30/74 (40%), Positives = 43/74 (58%), Gaps = 3/74 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+ SDT+ VK I+D K+ P QQ LI GK L+D TLA
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLA 57
Query: 61 DNKVSEDGFLVVML 74
D + ++ L ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>sp|P69313|UBIQ_HELAN Ubiquitin OS=Helianthus annuus PE=3 SV=2
Length = 77
Score = 50.1 bits (118), Expect = 2e-05, Method: Composition-based stats.
Identities = 30/74 (40%), Positives = 43/74 (58%), Gaps = 3/74 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+ SDT+ VK I+D K+ P QQ LI GK L+D TLA
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLA 57
Query: 61 DNKVSEDGFLVVML 74
D + ++ L ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>sp|P15357|RS27A_DROME Ubiquitin-40S ribosomal protein S27a OS=Drosophila melanogaster
GN=RpS27A PE=1 SV=2
Length = 156
Score = 49.7 bits (117), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 44/75 (58%), Gaps = 3/75 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D +G P QQ LI GK L+D TL+
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 61 DNKVSEDGFLVVMLS 75
D + ++ L ++L
Sbjct: 58 DYNIQKESTLHLVLR 72
>sp|P69310|UBIQ_AVESA Ubiquitin OS=Avena sativa PE=1 SV=1
Length = 76
Score = 49.7 bits (117), Expect = 2e-05, Method: Composition-based stats.
Identities = 30/74 (40%), Positives = 43/74 (58%), Gaps = 3/74 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+ SDT+ VK I+D K+ P QQ LI GK L+D TLA
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLA 57
Query: 61 DNKVSEDGFLVVML 74
D + ++ L ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>sp|Q0D261|UBL4A_XENLA Ubiquitin-like protein 4A OS=Xenopus laevis GN=ubl4a PE=2 SV=1
Length = 148
Score = 49.7 bits (117), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/60 (46%), Positives = 36/60 (60%), Gaps = 3/60 (5%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M+LTVK LKG I+V DTV+AVK+ +E+ K P QQ L+ GK L DE L+
Sbjct: 1 MQLTVKALKGKEAHIQVSEGDTVLAVKRLVEE---KLQVPVSQQRLLFRGKSLADEHCLS 57
>sp|P0CG54|UBB_CAVPO Polyubiquitin-B OS=Cavia porcellus GN=UBB PE=2 SV=1
Length = 311
Score = 49.7 bits (117), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 44/75 (58%), Gaps = 3/75 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D K+ P QQ LI GK L+D TL+
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLS 57
Query: 61 DNKVSEDGFLVVMLS 75
D + ++ L ++L
Sbjct: 58 DYNIQKESTLHLVLR 72
Score = 49.7 bits (117), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 44/75 (58%), Gaps = 3/75 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D K+ P QQ LI GK L+D TL+
Sbjct: 77 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLS 133
Query: 61 DNKVSEDGFLVVMLS 75
D + ++ L ++L
Sbjct: 134 DYNIQKESTLHLVLR 148
Score = 49.7 bits (117), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 44/75 (58%), Gaps = 3/75 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D K+ P QQ LI GK L+D TL+
Sbjct: 153 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLS 209
Query: 61 DNKVSEDGFLVVMLS 75
D + ++ L ++L
Sbjct: 210 DYNIQKESTLHLVLR 224
Score = 49.7 bits (117), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 44/75 (58%), Gaps = 3/75 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D K+ P QQ LI GK L+D TL+
Sbjct: 229 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLS 285
Query: 61 DNKVSEDGFLVVMLS 75
D + ++ L ++L
Sbjct: 286 DYNIQKESTLHLVLR 300
>sp|P46575|RL40_EIMBO Ubiquitin-60S ribosomal protein L40 OS=Eimeria bovis PE=2 SV=2
Length = 129
Score = 49.7 bits (117), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 44/75 (58%), Gaps = 3/75 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D +G P QQ LI GK L+D TL+
Sbjct: 1 MQIFVKTLTGKTITLDVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
Query: 61 DNKVSEDGFLVVMLS 75
D + ++ L ++L
Sbjct: 58 DYNIQKESTLHLVLR 72
>sp|P69326|UBIQ_WHEAT Ubiquitin OS=Triticum aestivum PE=3 SV=2
Length = 77
Score = 49.7 bits (117), Expect = 3e-05, Method: Composition-based stats.
Identities = 30/74 (40%), Positives = 43/74 (58%), Gaps = 3/74 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+ SDT+ VK I+D K+ P QQ LI GK L+D TLA
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLA 57
Query: 61 DNKVSEDGFLVVML 74
D + ++ L ++L
Sbjct: 58 DYNIQKESTLHLVL 71
>sp|P0CG55|UBB_SHEEP Polyubiquitin-B OS=Ovis aries GN=UBB PE=2 SV=1
Length = 305
Score = 49.7 bits (117), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 44/75 (58%), Gaps = 3/75 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D K+ P QQ LI GK L+D TL+
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLS 57
Query: 61 DNKVSEDGFLVVMLS 75
D + ++ L ++L
Sbjct: 58 DYNIQKESTLHLVLR 72
Score = 49.7 bits (117), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 44/75 (58%), Gaps = 3/75 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D K+ P QQ LI GK L+D TL+
Sbjct: 77 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLS 133
Query: 61 DNKVSEDGFLVVMLS 75
D + ++ L ++L
Sbjct: 134 DYNIQKESTLHLVLR 148
Score = 49.7 bits (117), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 44/75 (58%), Gaps = 3/75 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D K+ P QQ LI GK L+D TL+
Sbjct: 153 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLS 209
Query: 61 DNKVSEDGFLVVMLS 75
D + ++ L ++L
Sbjct: 210 DYNIQKESTLHLVLR 224
Score = 49.7 bits (117), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 44/75 (58%), Gaps = 3/75 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D K+ P QQ LI GK L+D TL+
Sbjct: 229 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLS 285
Query: 61 DNKVSEDGFLVVMLS 75
D + ++ L ++L
Sbjct: 286 DYNIQKESTLHLVLR 300
>sp|P0CG51|UBB_RAT Polyubiquitin-B OS=Rattus norvegicus GN=Ubb PE=1 SV=1
Length = 305
Score = 49.3 bits (116), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 44/75 (58%), Gaps = 3/75 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D K+ P QQ LI GK L+D TL+
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLS 57
Query: 61 DNKVSEDGFLVVMLS 75
D + ++ L ++L
Sbjct: 58 DYNIQKESTLHLVLR 72
Score = 49.3 bits (116), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 44/75 (58%), Gaps = 3/75 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D K+ P QQ LI GK L+D TL+
Sbjct: 77 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLS 133
Query: 61 DNKVSEDGFLVVMLS 75
D + ++ L ++L
Sbjct: 134 DYNIQKESTLHLVLR 148
Score = 49.3 bits (116), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 44/75 (58%), Gaps = 3/75 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D K+ P QQ LI GK L+D TL+
Sbjct: 153 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLS 209
Query: 61 DNKVSEDGFLVVMLS 75
D + ++ L ++L
Sbjct: 210 DYNIQKESTLHLVLR 224
Score = 49.3 bits (116), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 44/75 (58%), Gaps = 3/75 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D K+ P QQ LI GK L+D TL+
Sbjct: 229 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLS 285
Query: 61 DNKVSEDGFLVVMLS 75
D + ++ L ++L
Sbjct: 286 DYNIQKESTLHLVLR 300
>sp|P0CG49|UBB_MOUSE Polyubiquitin-B OS=Mus musculus GN=Ubb PE=1 SV=1
Length = 305
Score = 49.3 bits (116), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 44/75 (58%), Gaps = 3/75 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D K+ P QQ LI GK L+D TL+
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLS 57
Query: 61 DNKVSEDGFLVVMLS 75
D + ++ L ++L
Sbjct: 58 DYNIQKESTLHLVLR 72
Score = 49.3 bits (116), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 44/75 (58%), Gaps = 3/75 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D K+ P QQ LI GK L+D TL+
Sbjct: 77 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLS 133
Query: 61 DNKVSEDGFLVVMLS 75
D + ++ L ++L
Sbjct: 134 DYNIQKESTLHLVLR 148
Score = 49.3 bits (116), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 44/75 (58%), Gaps = 3/75 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D K+ P QQ LI GK L+D TL+
Sbjct: 153 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLS 209
Query: 61 DNKVSEDGFLVVMLS 75
D + ++ L ++L
Sbjct: 210 DYNIQKESTLHLVLR 224
Score = 49.3 bits (116), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 44/75 (58%), Gaps = 3/75 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D K+ P QQ LI GK L+D TL+
Sbjct: 229 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLS 285
Query: 61 DNKVSEDGFLVVMLS 75
D + ++ L ++L
Sbjct: 286 DYNIQKESTLHLVLR 300
>sp|P0CG62|UBB_CHICK Polyubiquitin-B OS=Gallus gallus GN=UBB PE=2 SV=1
Length = 305
Score = 49.3 bits (116), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 44/75 (58%), Gaps = 3/75 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D K+ P QQ LI GK L+D TL+
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLS 57
Query: 61 DNKVSEDGFLVVMLS 75
D + ++ L ++L
Sbjct: 58 DYNIQKESTLHLVLR 72
Score = 49.3 bits (116), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 44/75 (58%), Gaps = 3/75 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D K+ P QQ LI GK L+D TL+
Sbjct: 77 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLS 133
Query: 61 DNKVSEDGFLVVMLS 75
D + ++ L ++L
Sbjct: 134 DYNIQKESTLHLVLR 148
Score = 49.3 bits (116), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 44/75 (58%), Gaps = 3/75 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D K+ P QQ LI GK L+D TL+
Sbjct: 153 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLS 209
Query: 61 DNKVSEDGFLVVMLS 75
D + ++ L ++L
Sbjct: 210 DYNIQKESTLHLVLR 224
Score = 49.3 bits (116), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 44/75 (58%), Gaps = 3/75 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D K+ P QQ LI GK L+D TL+
Sbjct: 229 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLS 285
Query: 61 DNKVSEDGFLVVMLS 75
D + ++ L ++L
Sbjct: 286 DYNIQKESTLHLVLR 300
>sp|P0CH28|UBC_BOVIN Polyubiquitin-C OS=Bos taurus GN=UBC PE=1 SV=1
Length = 690
Score = 49.3 bits (116), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 44/75 (58%), Gaps = 3/75 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D K+ P QQ LI GK L+D TL+
Sbjct: 77 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLS 133
Query: 61 DNKVSEDGFLVVMLS 75
D + ++ L ++L
Sbjct: 134 DYNIQKESTLHLVLR 148
Score = 49.3 bits (116), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 44/75 (58%), Gaps = 3/75 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D K+ P QQ LI GK L+D TL+
Sbjct: 153 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLS 209
Query: 61 DNKVSEDGFLVVMLS 75
D + ++ L ++L
Sbjct: 210 DYNIQKESTLHLVLR 224
Score = 49.3 bits (116), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 44/75 (58%), Gaps = 3/75 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D K+ P QQ LI GK L+D TL+
Sbjct: 229 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLS 285
Query: 61 DNKVSEDGFLVVMLS 75
D + ++ L ++L
Sbjct: 286 DYNIQKESTLHLVLR 300
Score = 49.3 bits (116), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 44/75 (58%), Gaps = 3/75 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D K+ P QQ LI GK L+D TL+
Sbjct: 305 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLS 361
Query: 61 DNKVSEDGFLVVMLS 75
D + ++ L ++L
Sbjct: 362 DYNIQKESTLHLVLR 376
Score = 49.3 bits (116), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 44/75 (58%), Gaps = 3/75 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D K+ P QQ LI GK L+D TL+
Sbjct: 381 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLS 437
Query: 61 DNKVSEDGFLVVMLS 75
D + ++ L ++L
Sbjct: 438 DYNIQKESTLHLVLR 452
Score = 49.3 bits (116), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 44/75 (58%), Gaps = 3/75 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D K+ P QQ LI GK L+D TL+
Sbjct: 457 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLS 513
Query: 61 DNKVSEDGFLVVMLS 75
D + ++ L ++L
Sbjct: 514 DYNIQKESTLHLVLR 528
Score = 49.3 bits (116), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 44/75 (58%), Gaps = 3/75 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D K+ P QQ LI GK L+D TL+
Sbjct: 533 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLS 589
Query: 61 DNKVSEDGFLVVMLS 75
D + ++ L ++L
Sbjct: 590 DYNIQKESTLHLVLR 604
Score = 49.3 bits (116), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 44/75 (58%), Gaps = 3/75 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D K+ P QQ LI GK L+D TL+
Sbjct: 609 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLS 665
Query: 61 DNKVSEDGFLVVMLS 75
D + ++ L ++L
Sbjct: 666 DYNIQKESTLHLVLR 680
Score = 47.4 bits (111), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 43/75 (57%), Gaps = 3/75 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I Q K+ P QQ LI GK L+D TL+
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKGKI---QEKEGIPPDQQRLIFAGKQLEDGRTLS 57
Query: 61 DNKVSEDGFLVVMLS 75
D + ++ L ++L
Sbjct: 58 DYNIQKESTLHLVLR 72
>sp|Q8MKD1|UBB_HORSE Polyubiquitin-B OS=Equus caballus GN=UBB PE=2 SV=3
Length = 305
Score = 49.3 bits (116), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 44/75 (58%), Gaps = 3/75 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D K+ P QQ LI GK L+D TL+
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLS 57
Query: 61 DNKVSEDGFLVVMLS 75
D + ++ L ++L
Sbjct: 58 DYNIQKESTLHLVLR 72
Score = 49.3 bits (116), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 44/75 (58%), Gaps = 3/75 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D K+ P QQ LI GK L+D TL+
Sbjct: 77 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLS 133
Query: 61 DNKVSEDGFLVVMLS 75
D + ++ L ++L
Sbjct: 134 DYNIQKESTLHLVLR 148
Score = 49.3 bits (116), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 44/75 (58%), Gaps = 3/75 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D K+ P QQ LI GK L+D TL+
Sbjct: 229 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLS 285
Query: 61 DNKVSEDGFLVVMLS 75
D + ++ L ++L
Sbjct: 286 DYNIQKESTLHLVLR 300
Score = 48.1 bits (113), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 43/75 (57%), Gaps = 3/75 (4%)
Query: 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60
M++ VKTL G + V+PSDT+ VK I+D K+ P QQ I GK L+D TL+
Sbjct: 153 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQD---KEGIPPDQQRFIFAGKQLEDGRTLS 209
Query: 61 DNKVSEDGFLVVMLS 75
D + ++ L ++L
Sbjct: 210 DYNIQKESTLHLVLR 224
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.310 0.126 0.360
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 104,997,514
Number of Sequences: 539616
Number of extensions: 4633605
Number of successful extensions: 47402
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 462
Number of HSP's successfully gapped in prelim test: 822
Number of HSP's that attempted gapping in prelim test: 37382
Number of HSP's gapped (non-prelim): 8611
length of query: 274
length of database: 191,569,459
effective HSP length: 116
effective length of query: 158
effective length of database: 128,974,003
effective search space: 20377892474
effective search space used: 20377892474
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 60 (27.7 bits)