Query 023989
Match_columns 274
No_of_seqs 327 out of 1316
Neff 6.5
Searched_HMMs 29240
Date Mon Mar 25 16:16:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023989.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023989hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1oqy_A HHR23A, UV excision rep 100.0 5.3E-49 1.8E-53 371.7 22.6 238 1-269 8-254 (368)
2 3m62_B UV excision repair prot 99.8 5.9E-21 2E-25 150.3 8.5 77 1-80 2-78 (106)
3 1uel_A HHR23B, UV excision rep 99.8 1.6E-19 5.4E-24 139.1 12.2 77 1-80 1-80 (95)
4 4dwf_A HLA-B-associated transc 99.8 7.7E-20 2.6E-24 138.8 9.7 76 1-80 6-81 (90)
5 4fbj_B NEDD8; effector-HOST ta 99.8 1.9E-19 6.7E-24 136.7 10.4 77 1-80 1-77 (88)
6 3phx_B Ubiquitin-like protein 99.8 2.3E-19 7.9E-24 132.9 10.4 74 1-77 5-78 (79)
7 2wyq_A HHR23A, UV excision rep 99.8 2.3E-19 7.8E-24 134.4 10.3 76 1-79 6-84 (85)
8 4a20_A Ubiquitin-like protein 99.8 1.4E-19 4.7E-24 141.0 8.6 74 1-77 20-97 (98)
9 3v6c_B Ubiquitin; structural g 99.8 3.5E-19 1.2E-23 135.8 10.0 74 1-77 18-91 (91)
10 2kk8_A Uncharacterized protein 99.8 2.7E-19 9.3E-24 135.2 9.2 72 1-75 11-83 (84)
11 3k9o_B Ubiquitin, UBB+1; E2-25 99.8 8.5E-19 2.9E-23 134.4 11.0 76 1-79 2-77 (96)
12 2lxa_A Ubiquitin-like protein 99.8 1.9E-19 6.5E-24 137.3 6.9 74 1-77 2-79 (87)
13 1wx7_A Ubiquilin 3; ubiquitin- 99.8 1E-18 3.5E-23 137.1 11.2 75 1-79 18-92 (106)
14 3plu_A Ubiquitin-like modifier 99.8 6.6E-19 2.2E-23 135.5 9.4 70 1-73 22-91 (93)
15 3dbh_I NEDD8; cell cycle, acti 99.8 9.2E-19 3.1E-23 131.7 9.2 74 1-77 13-86 (88)
16 1ndd_A NEDD8, protein (ubiquit 99.8 2E-18 6.9E-23 125.8 10.8 74 1-77 1-74 (76)
17 4hcn_B Polyubiquitin, ubiquiti 99.8 1.3E-18 4.3E-23 134.7 10.2 74 1-77 23-96 (98)
18 2faz_A Ubiquitin-like containi 99.8 1.5E-18 5.1E-23 128.0 9.7 73 1-76 3-77 (78)
19 3n3k_B Ubiquitin; hydrolase, p 99.8 1.6E-18 5.6E-23 129.4 9.5 75 1-78 4-78 (85)
20 1ttn_A DC-UBP, dendritic cell- 99.8 1.2E-18 4.1E-23 136.9 9.1 77 1-80 24-100 (106)
21 2dzi_A Ubiquitin-like protein 99.8 2.1E-18 7.1E-23 127.7 9.8 73 1-76 8-80 (81)
22 3a9j_A Ubiquitin; protein comp 99.8 3.5E-18 1.2E-22 124.5 10.8 74 1-77 1-74 (76)
23 1uh6_A Ubiquitin-like 5; beta- 99.8 7.3E-19 2.5E-23 137.2 7.5 71 1-74 29-99 (100)
24 3mtn_B UBA80, ubcep1, ubiquiti 99.8 2.8E-18 9.7E-23 127.9 10.1 75 1-78 4-78 (85)
25 4eew_A Large proline-rich prot 99.8 2E-18 6.8E-23 130.4 9.3 71 1-75 18-88 (88)
26 1wia_A Hypothetical ubiquitin- 99.8 2.7E-18 9.2E-23 131.9 10.1 74 1-80 8-82 (95)
27 1wy8_A NP95-like ring finger p 99.8 5.3E-18 1.8E-22 128.2 11.0 76 1-79 8-85 (89)
28 1sif_A Ubiquitin; hydrophobic 99.8 4.1E-18 1.4E-22 129.4 10.2 75 1-78 10-84 (88)
29 1wgd_A Homocysteine-responsive 99.8 3.5E-18 1.2E-22 130.8 9.8 76 1-79 8-89 (93)
30 1wh3_A 59 kDa 2'-5'-oligoadeny 99.8 3.9E-18 1.3E-22 128.3 9.7 75 1-78 8-82 (87)
31 2uyz_B Small ubiquitin-related 99.8 2.3E-18 7.8E-23 127.5 8.2 74 1-77 4-77 (79)
32 2hj8_A Interferon-induced 17 k 99.7 2.3E-18 8E-23 130.6 8.3 75 1-78 5-79 (88)
33 1v5o_A 1700011N24RIK protein; 99.7 6.3E-18 2.2E-22 131.9 10.2 76 1-79 8-88 (102)
34 1wju_A NEDD8 ultimate buster-1 99.7 4.2E-18 1.4E-22 132.9 9.1 72 2-76 17-92 (100)
35 2bwf_A Ubiquitin-like protein 99.7 8.1E-18 2.8E-22 123.3 10.2 71 1-75 5-75 (77)
36 1v2y_A 3300001G02RIK protein; 99.7 2.1E-18 7.1E-23 135.9 7.2 76 1-79 8-99 (105)
37 1ify_A HHR23A, UV excision rep 99.7 1.4E-18 4.7E-23 118.8 5.2 49 146-197 1-49 (49)
38 2kan_A Uncharacterized protein 99.7 7.9E-18 2.7E-22 129.7 10.1 75 1-79 16-91 (94)
39 1wyw_B Ubiquitin-like protein 99.7 5.6E-18 1.9E-22 131.0 8.6 74 1-77 22-95 (97)
40 2klc_A Ubiquilin-1; ubiquitin- 99.7 1.2E-17 4.3E-22 130.1 10.5 74 1-78 26-99 (101)
41 1wx8_A Riken cDNA 4931431F19; 99.7 5.2E-18 1.8E-22 130.4 7.9 75 1-79 18-92 (96)
42 1yx5_B Ubiquitin; proteasome, 99.7 1.9E-17 6.6E-22 127.7 11.0 75 1-78 1-75 (98)
43 3vdz_A Ubiquitin-40S ribosomal 99.7 1.4E-17 4.6E-22 132.1 10.2 74 1-77 36-109 (111)
44 1yqb_A Ubiquilin 3; structural 99.7 1.2E-17 4E-22 130.1 9.2 75 1-79 23-97 (100)
45 1wgh_A Ubiquitin-like 3, HCG-1 99.7 2E-17 6.8E-22 132.5 10.7 76 1-76 17-99 (116)
46 1j8c_A Ubiquitin-like protein 99.7 1.7E-17 5.8E-22 134.4 10.1 75 1-79 33-107 (125)
47 3b1l_X E3 ubiquitin-protein li 99.6 4.3E-19 1.5E-23 130.2 0.0 74 1-77 1-74 (76)
48 1wgg_A Ubiquitin carboxyl-term 99.7 1.8E-17 6.3E-22 128.2 9.0 72 1-77 8-80 (96)
49 2l7r_A Ubiquitin-like protein 99.7 2.6E-17 9E-22 126.3 9.2 72 1-77 20-91 (93)
50 1x1m_A Ubiquitin-like protein 99.7 3.5E-17 1.2E-21 128.8 9.8 75 1-78 13-102 (107)
51 3l0w_B Monoubiquitinated proli 99.7 7E-17 2.4E-21 137.1 11.7 75 1-78 1-75 (169)
52 2gow_A HCG-1 protein, ubiquiti 99.7 3.7E-17 1.3E-21 132.5 8.5 73 1-76 18-100 (125)
53 2ojr_A Ubiquitin; lanthide-bin 99.7 1.1E-16 3.7E-21 126.7 10.8 74 1-77 36-109 (111)
54 3m63_B Ubiquitin domain-contai 99.7 1.7E-17 5.8E-22 129.5 6.0 72 1-76 29-100 (101)
55 1wxv_A BAG-family molecular ch 99.7 1.1E-16 3.7E-21 122.1 10.0 74 1-78 8-87 (92)
56 2kdb_A Homocysteine-responsive 99.7 3.6E-17 1.2E-21 127.5 7.2 71 1-73 24-99 (99)
57 1v5t_A 8430435I17RIK protein; 99.7 8.8E-17 3E-21 122.6 9.1 73 1-77 8-84 (90)
58 2kdi_A Ubiquitin, vacuolar pro 99.7 2.3E-16 7.7E-21 125.7 11.1 76 1-79 10-85 (114)
59 1se9_A Ubiquitin family; ubiqu 99.7 1.2E-16 4E-21 129.6 9.5 78 1-78 17-105 (126)
60 3rt3_B Ubiquitin-like protein 99.7 1.5E-16 5.1E-21 132.5 10.4 75 1-78 82-156 (159)
61 2fnj_B Transcription elongatio 99.7 8.3E-17 2.8E-21 129.1 7.8 72 1-75 1-80 (118)
62 4ajy_B Transcription elongatio 99.7 1E-16 3.6E-21 128.2 8.4 73 1-76 1-81 (118)
63 2kd0_A LRR repeats and ubiquit 99.7 2.3E-16 8E-21 119.1 9.8 70 3-75 14-83 (85)
64 1we6_A Splicing factor, putati 99.7 1.6E-16 5.4E-21 125.6 9.0 76 1-79 28-107 (111)
65 1v86_A DNA segment, CHR 7, way 99.7 7.1E-17 2.4E-21 124.5 6.8 71 1-76 18-88 (95)
66 3u30_A Ubiquitin, linear DI-ub 99.7 2.6E-16 9E-21 133.0 10.4 74 1-77 21-94 (172)
67 3rt3_B Ubiquitin-like protein 99.7 2.9E-16 1E-20 130.7 10.3 73 1-76 3-77 (159)
68 3q3f_A Ribonuclease/ubiquitin 99.7 2.6E-16 8.9E-21 136.0 9.7 75 1-78 106-180 (189)
69 4dbg_A Ranbp-type and C3HC4-ty 99.7 4.6E-16 1.6E-20 122.4 9.7 74 1-77 25-101 (105)
70 2daf_A FLJ35834 protein; hypot 99.6 4.2E-16 1.4E-20 124.3 9.1 74 2-78 17-91 (118)
71 3u5e_m 60S ribosomal protein L 99.6 1.7E-17 5.9E-22 134.5 0.0 75 1-78 1-75 (128)
72 3b08_A Polyubiquitin-C, ubiqui 99.6 1.2E-15 4.2E-20 125.1 11.0 73 1-76 1-73 (152)
73 3b08_A Polyubiquitin-C, ubiqui 99.6 1.9E-15 6.4E-20 123.9 10.6 74 1-77 77-150 (152)
74 3u30_A Ubiquitin, linear DI-ub 99.6 1.3E-15 4.3E-20 128.8 9.1 74 1-77 97-170 (172)
75 2dzj_A Synaptic glycoprotein S 99.6 6.5E-16 2.2E-20 117.7 6.0 69 1-72 11-85 (88)
76 1we7_A SF3A1 protein; structur 99.6 2.7E-15 9.4E-20 119.3 9.8 76 1-79 26-111 (115)
77 3u5c_f 40S ribosomal protein S 99.6 1.3E-16 4.4E-21 133.5 1.1 76 1-79 1-76 (152)
78 2dzm_A FAS-associated factor 1 99.6 3.7E-15 1.3E-19 116.3 6.7 72 1-76 9-82 (100)
79 3ai5_A Yeast enhanced green fl 99.5 1.2E-14 3.9E-19 134.1 9.8 73 1-76 234-306 (307)
80 4b6w_A Tubulin-specific chaper 99.5 6.3E-15 2.1E-19 111.9 6.4 73 2-77 4-85 (86)
81 1wf9_A NPL4 family protein; be 99.5 1.9E-14 6.5E-19 113.2 7.6 71 1-75 8-94 (107)
82 2kjr_A CG11242; UBL, ubiquitin 99.5 5.4E-14 1.8E-18 108.6 8.9 70 1-73 16-93 (95)
83 1v6e_A Cytoskeleton-associated 99.5 8.8E-14 3E-18 106.9 8.6 75 1-78 8-90 (95)
84 2kj6_A Tubulin folding cofacto 99.5 8.1E-14 2.8E-18 108.1 8.2 72 2-76 16-96 (97)
85 1vej_A Riken cDNA 4931431F19; 99.5 7.2E-14 2.5E-18 103.0 7.0 46 150-198 26-72 (74)
86 2g3q_A Protein YBL047C; endocy 99.5 6.7E-14 2.3E-18 92.7 5.8 40 153-195 4-43 (43)
87 2xzm_9 RPS31E; ribosome, trans 99.5 5.7E-15 2E-19 127.3 0.0 70 1-78 1-70 (189)
88 2kzr_A Ubiquitin thioesterase 99.5 1.3E-13 4.5E-18 104.0 7.4 72 1-76 1-78 (86)
89 1vg5_A RSGI RUH-014, rhomboid 99.4 1E-13 3.5E-18 102.0 6.2 44 150-196 26-69 (73)
90 2io1_B Small ubiquitin-related 99.4 3.5E-13 1.2E-17 103.8 8.7 75 1-78 8-82 (94)
91 2bwb_A Ubiquitin-like protein 99.4 1.8E-13 6.1E-18 92.1 5.7 40 152-194 6-46 (46)
92 2knz_A Ubiquilin-4; cytoplasm, 99.4 2.9E-13 9.9E-18 93.7 5.4 43 151-196 9-52 (53)
93 1t0y_A Tubulin folding cofacto 99.4 8.5E-13 2.9E-17 106.1 9.0 75 1-78 7-89 (122)
94 1wm3_A Ubiquitin-like protein 99.4 1.5E-12 5.3E-17 95.1 9.3 71 1-74 2-72 (72)
95 3shq_A UBLCP1; phosphatase, hy 99.4 2.9E-13 1E-17 125.6 6.6 73 1-77 6-81 (320)
96 1veg_A NEDD8 ultimate buster-1 99.4 4.7E-13 1.6E-17 100.6 6.3 45 153-200 29-76 (83)
97 2jy5_A Ubiquilin-1; UBA, alter 99.4 7.9E-13 2.7E-17 91.1 6.3 42 150-194 9-51 (52)
98 1wji_A Tudor domain containing 99.4 6.7E-13 2.3E-17 95.1 6.0 42 153-197 9-50 (63)
99 2io0_B Small ubiquitin-related 99.4 2.8E-12 9.4E-17 98.3 9.5 75 1-78 6-80 (91)
100 3a4r_A Nfatc2-interacting prot 99.3 4.9E-12 1.7E-16 94.2 9.6 70 1-73 8-78 (79)
101 2dna_A Unnamed protein product 99.3 1.6E-12 5.6E-17 93.7 5.7 45 151-198 17-62 (67)
102 2d07_B Ubiquitin-like protein 99.3 6.7E-12 2.3E-16 96.4 9.1 74 1-77 18-91 (93)
103 1wr1_B Ubiquitin-like protein 99.3 1.9E-12 6.6E-17 91.1 5.4 42 150-194 14-56 (58)
104 2dak_A Ubiquitin carboxyl-term 99.3 8.8E-13 3E-17 94.4 3.6 43 153-198 9-51 (63)
105 1wz0_A Ubiquitin-like protein 99.3 8.5E-12 2.9E-16 97.8 8.9 75 1-78 25-99 (104)
106 1z96_A DNA-damage, UBA-domain 99.3 5.9E-12 2E-16 81.6 5.2 39 151-192 2-40 (40)
107 2dag_A Ubiquitin carboxyl-term 99.3 5.9E-12 2E-16 92.9 5.7 43 153-198 9-52 (74)
108 1wiv_A UBP14, ubiquitin-specif 99.3 6.4E-12 2.2E-16 92.5 5.8 40 153-195 29-68 (73)
109 2crn_A Ubash3A protein; compac 99.2 3.2E-12 1.1E-16 91.8 3.8 45 151-198 7-52 (64)
110 2k8h_A Small ubiquitin protein 99.2 1.3E-11 4.3E-16 97.8 7.3 75 1-78 27-101 (110)
111 2eke_C Ubiquitin-like protein 99.2 2.3E-11 8E-16 95.7 8.5 73 1-77 32-104 (106)
112 1whc_A RSGI RUH-027, UBA/UBX 3 99.2 5.7E-12 1.9E-16 90.5 4.1 42 154-198 10-52 (64)
113 2cpw_A CBL-interacting protein 99.2 7.3E-12 2.5E-16 89.9 4.4 40 154-196 20-60 (64)
114 2ekk_A UBA domain from E3 ubiq 99.2 1.1E-11 3.6E-16 83.6 4.6 38 153-194 9-46 (47)
115 1wjn_A Tubulin-folding protein 99.2 7.5E-11 2.6E-15 90.7 8.4 73 2-77 11-94 (97)
116 2dai_A Ubadc1, ubiquitin assoc 99.2 3.1E-11 1.1E-15 90.9 5.4 43 153-198 29-71 (83)
117 1vek_A UBP14, ubiquitin-specif 99.1 4.8E-11 1.7E-15 90.1 5.7 43 153-198 29-72 (84)
118 1wgn_A UBAP1, ubiquitin associ 99.1 4.5E-11 1.5E-15 84.0 4.8 42 149-194 16-57 (63)
119 2dah_A Ubiquilin-3; UBA domain 99.1 1.3E-10 4.3E-15 80.7 5.3 41 152-195 8-49 (54)
120 2lbc_A Ubiquitin carboxyl-term 99.1 1.6E-10 5.4E-15 93.4 5.8 41 153-196 78-118 (126)
121 2cwb_A Chimera of immunoglobul 99.0 2.2E-10 7.4E-15 90.1 5.9 43 151-196 64-107 (108)
122 3kyd_D Small ubiquitin-related 99.0 2.5E-09 8.4E-14 85.2 9.7 73 1-76 41-113 (115)
123 2dkl_A Trinucleotide repeat co 99.0 5.3E-10 1.8E-14 84.5 5.5 38 154-194 22-59 (85)
124 1dv0_A DNA repair protein HHR2 98.9 2.2E-10 7.5E-15 77.2 1.5 41 152-195 3-43 (47)
125 2ooa_A E3 ubiquitin-protein li 98.8 5.9E-09 2E-13 70.8 5.3 38 153-193 11-48 (52)
126 2d9s_A CBL E3 ubiquitin protei 98.8 1.1E-08 3.9E-13 69.8 5.4 39 153-194 9-47 (53)
127 4ae4_A Ubiquitin-associated pr 98.8 6.3E-09 2.1E-13 83.2 4.8 39 153-194 76-114 (118)
128 3pge_A SUMO-modified prolifera 98.7 3.4E-08 1.2E-12 85.7 9.2 75 1-79 30-104 (200)
129 3tix_A Ubiquitin-like protein 98.7 2.1E-08 7.3E-13 86.1 7.3 74 1-78 58-131 (207)
130 2pjh_A Protein NPL4, nuclear p 98.7 1.4E-08 4.7E-13 75.7 4.4 69 1-73 5-78 (80)
131 2oo9_A E3 ubiquitin-protein li 98.7 3.6E-08 1.2E-12 65.0 5.6 41 150-193 1-41 (46)
132 2juj_A E3 ubiquitin-protein li 98.6 6.5E-08 2.2E-12 66.2 5.0 40 152-194 6-45 (56)
133 3goe_A DNA repair protein RAD6 98.6 3.8E-07 1.3E-11 67.3 9.4 70 2-74 11-81 (82)
134 3k9o_A Ubiquitin-conjugating e 98.5 9.7E-08 3.3E-12 82.7 5.1 43 148-193 158-200 (201)
135 2jxx_A Nfatc2-interacting prot 98.5 7.4E-07 2.5E-11 68.8 8.8 70 1-73 26-96 (97)
136 1wj7_A Hypothetical protein (R 98.4 2.7E-07 9.2E-12 71.7 5.9 44 151-197 37-81 (104)
137 3v7o_A Minor nucleoprotein VP3 98.4 3E-08 1E-12 86.3 0.0 74 1-78 22-95 (227)
138 4ae4_A Ubiquitin-associated pr 98.4 3.6E-07 1.2E-11 72.9 5.2 38 153-193 8-45 (118)
139 2cp8_A NEXT to BRCA1 gene 1 pr 98.3 6.9E-07 2.4E-11 61.5 4.6 42 150-194 6-48 (54)
140 2l76_A Nfatc2-interacting prot 98.3 3.9E-06 1.3E-10 64.3 9.1 72 1-76 22-93 (95)
141 2lbc_A Ubiquitin carboxyl-term 98.2 5E-07 1.7E-11 72.7 3.6 41 154-197 4-45 (126)
142 2qsf_X RAD23, UV excision repa 98.2 1.2E-06 4.1E-11 74.1 4.7 42 150-194 127-168 (171)
143 3uf8_A Ubiquitin-like protein 98.2 4.9E-06 1.7E-10 72.4 8.4 73 2-78 23-95 (209)
144 4efo_A Serine/threonine-protei 98.1 1.1E-05 3.7E-10 61.8 8.7 68 3-73 15-86 (94)
145 2cos_A Serine/threonine protei 98.0 6.2E-06 2.1E-10 56.3 4.7 38 152-192 8-46 (54)
146 3ix6_A TS, tsase, thymidylate 98.0 1.1E-06 3.7E-11 82.4 0.0 73 1-77 22-94 (360)
147 2bps_A YUKD protein; ubiquitin 97.9 1.7E-05 5.9E-10 59.1 6.1 72 2-73 6-81 (81)
148 1oqy_A HHR23A, UV excision rep 97.9 2.5E-06 8.6E-11 80.3 1.6 41 151-194 323-363 (368)
149 2kc2_A Talin-1, F1; FERM, adhe 97.8 3.5E-05 1.2E-09 62.2 6.6 69 2-73 13-120 (128)
150 2al3_A TUG long isoform; TUG U 97.8 9.5E-05 3.3E-09 56.0 8.4 75 1-78 10-84 (90)
151 4da1_A Protein phosphatase 1K, 97.8 3.4E-06 1.2E-10 79.5 0.0 73 2-78 32-104 (389)
152 2f4m_B UV excision repair prot 97.7 1.8E-05 6.1E-10 55.9 2.8 20 250-269 2-21 (61)
153 3e46_A Ubiquitin-conjugating e 97.6 4.5E-05 1.5E-09 68.3 5.3 43 148-193 210-252 (253)
154 3qx1_A FAS-associated factor 1 97.6 0.00027 9.2E-09 52.4 8.5 69 2-74 9-82 (84)
155 2dzk_A UBX domain-containing p 97.6 0.00059 2E-08 53.3 10.9 71 2-75 15-90 (109)
156 1pve_A HHR23B, UV excision rep 97.5 9.9E-06 3.4E-10 59.0 -0.3 21 249-269 3-23 (72)
157 1wj4_A KIAA0794 protein; UBX d 97.1 0.0013 4.6E-08 52.5 7.4 69 2-74 45-118 (124)
158 2cr5_A Reproduction 8; UBX dom 96.8 0.0073 2.5E-07 46.9 9.4 69 2-74 25-97 (109)
159 1wgl_A TOLL-interacting protei 96.8 0.0013 4.5E-08 45.9 4.3 40 152-194 8-49 (59)
160 1s3s_G P47 protein; AAA ATPase 96.7 0.0048 1.7E-07 49.3 7.8 66 2-69 54-122 (127)
161 2pwq_A Ubiquitin conjugating e 96.6 0.00035 1.2E-08 61.1 0.0 41 152-195 176-216 (216)
162 2dhy_A CUE domain-containing p 96.5 0.0055 1.9E-07 43.8 5.8 44 148-194 13-58 (67)
163 1otr_A Protein CUE2; protein-p 96.4 0.0049 1.7E-07 41.4 4.7 39 153-194 4-44 (49)
164 3ihp_A Ubiquitin carboxyl-term 96.2 0.0039 1.3E-07 64.5 5.1 41 151-194 718-758 (854)
165 2di0_A Activating signal coint 96.0 0.019 6.5E-07 41.5 6.7 50 148-200 8-60 (71)
166 2daj_A KIAA0977 protein, COBL- 95.9 0.033 1.1E-06 41.6 7.7 71 2-78 12-85 (91)
167 2l32_A Small archaeal modifier 95.8 0.032 1.1E-06 40.3 7.3 60 1-73 1-60 (74)
168 2cp9_A EF-TS, EF-TSMT, elongat 95.7 0.017 5.7E-07 40.9 5.1 36 154-192 10-46 (64)
169 4e71_A Plexin-B2, MM1; transme 95.4 0.091 3.1E-06 41.1 8.8 64 10-74 23-109 (111)
170 1ryj_A Unknown; beta/alpha pro 95.3 0.11 3.9E-06 36.7 8.5 60 1-73 5-64 (70)
171 4a3p_A Ubiquitin carboxyl-term 95.0 0.077 2.6E-06 45.9 8.2 61 13-76 142-209 (217)
172 2r2o_A Plexin-B1; effector dom 94.9 0.096 3.3E-06 42.4 7.9 65 11-76 41-129 (138)
173 3jyu_A Ubiquitin carboxyl-term 94.7 0.18 6.3E-06 43.9 9.9 62 13-77 154-222 (231)
174 1vjk_A Molybdopterin convertin 94.6 0.25 8.7E-06 37.0 9.1 68 1-73 10-92 (98)
175 3rpf_C Molybdopterin convertin 94.1 0.15 5.2E-06 36.3 6.6 65 1-73 1-68 (74)
176 3h6n_A Plexin-D1; structural g 94.0 0.34 1.2E-05 38.6 9.0 65 10-75 16-104 (127)
177 3ivf_A Talin-1; FERM domain, c 93.4 0.27 9.3E-06 45.3 8.8 71 3-74 6-83 (371)
178 4e74_A Plexin-A4; RBD, structu 93.2 0.27 9.3E-06 38.7 7.2 64 12-76 28-115 (117)
179 3ihp_A Ubiquitin carboxyl-term 92.5 0.085 2.9E-06 54.5 4.3 42 153-197 652-694 (854)
180 1q02_A Sequestosome 1; helical 92.5 0.072 2.5E-06 35.9 2.4 38 151-191 8-47 (52)
181 3po0_A Small archaeal modifier 92.4 0.98 3.3E-05 32.9 9.0 56 11-73 18-83 (89)
182 4dbg_B Ring finger protein 31; 91.3 0.15 5E-06 42.3 3.6 37 153-191 102-138 (162)
183 1oey_A P67-PHOX, neutrophil cy 90.9 0.44 1.5E-05 35.2 5.5 44 2-50 7-50 (83)
184 1ip9_A BEM1 protein; ubiquitin 90.3 0.39 1.3E-05 35.7 4.7 41 3-48 13-54 (85)
185 3dwg_C 9.5 kDa culture filtrat 90.1 0.96 3.3E-05 33.2 6.9 71 1-73 1-87 (93)
186 1ef1_A Moesin; membrane, FERM 89.9 1.6 5.5E-05 38.5 9.5 74 1-77 2-80 (294)
187 1wgk_A Riken cDNA 2900073H19 p 89.2 0.4 1.4E-05 37.4 4.4 69 1-74 12-103 (114)
188 1h4r_A Merlin; FERM, neurofibr 89.2 1.8 6.2E-05 38.6 9.4 74 1-77 23-100 (314)
189 1tyg_B YJBS; alpha beta barrel 89.0 0.59 2E-05 34.7 4.9 56 8-73 25-81 (87)
190 1tte_A Ubiquitin-conjugating e 88.7 0.42 1.4E-05 41.3 4.6 25 154-181 170-194 (215)
191 2juo_A GA-binding protein alph 88.5 1.4 4.8E-05 32.7 6.5 59 14-75 6-64 (89)
192 3kuz_A Plexin-C1; structural g 88.4 1.4 4.9E-05 35.0 7.0 60 11-73 39-124 (126)
193 1p3q_Q VPS9P, vacuolar protein 87.8 0.22 7.5E-06 33.9 1.7 42 151-193 10-51 (54)
194 3ivf_A Talin-1; FERM domain, c 86.4 2.9 0.0001 38.3 9.1 72 1-74 86-166 (371)
195 3onh_A Ubiquitin-activating en 86.4 2.1 7.3E-05 34.0 6.9 57 14-74 9-78 (127)
196 3hm6_X Plexin-B1; structural g 86.2 2.5 8.4E-05 42.1 8.8 64 12-76 275-362 (644)
197 2kmm_A Guanosine-3',5'-BIS(dip 86.2 2 6.7E-05 29.7 6.1 63 1-75 1-63 (73)
198 2qjl_A URM1, ubiquitin-related 86.1 1.2 4.1E-05 33.3 5.3 35 1-35 2-46 (99)
199 2i1j_A Moesin; FERM, coiled-co 86.1 2.3 7.9E-05 41.8 8.7 75 1-78 5-84 (575)
200 2k9x_A Tburm1, uncharacterized 85.7 0.23 8E-06 38.5 1.0 69 1-74 5-97 (110)
201 3ig3_A Plxna3 protein; plexin 85.6 3.4 0.00012 40.9 9.5 65 11-76 247-335 (627)
202 1ufz_A Hypothetical protein BA 85.6 1.9 6.4E-05 31.8 5.8 42 153-194 34-75 (83)
203 3qij_A Protein 4.1; cytoskelet 85.2 3.2 0.00011 37.0 8.5 71 1-73 18-93 (296)
204 1ixs_A Holliday junction DNA h 85.0 0.81 2.8E-05 31.8 3.5 28 150-180 14-41 (62)
205 1f0z_A THis protein; ubiquitin 84.8 0.81 2.8E-05 31.6 3.4 60 1-73 1-60 (66)
206 2k5p_A THis protein, thiamine- 84.5 1.1 3.6E-05 32.5 4.1 61 1-74 1-64 (78)
207 2kl0_A Putative thiamin biosyn 84.0 1.1 3.7E-05 32.0 3.9 60 1-74 1-60 (73)
208 1aip_C EF-TS, elongation facto 84.0 1.3 4.6E-05 37.8 5.1 36 154-192 4-40 (196)
209 2l52_A Methanosarcina acetivor 83.5 4.7 0.00016 30.0 7.5 69 1-73 4-93 (99)
210 2q5w_D Molybdopterin convertin 83.1 2.6 8.8E-05 29.5 5.6 54 11-73 16-71 (77)
211 1xb2_B EF-TS, elongation facto 82.9 1.4 4.8E-05 39.9 5.1 36 155-193 6-42 (291)
212 1vd2_A Protein kinase C, IOTA 82.8 4.6 0.00016 30.1 7.0 46 3-51 7-54 (89)
213 1y8x_B Ubiquitin-activating en 82.6 1.5 5.1E-05 33.3 4.3 59 12-73 6-82 (98)
214 1tr8_A Conserved protein (MTH1 82.5 1.6 5.3E-05 33.5 4.5 35 154-191 66-101 (102)
215 1wgr_A Growth factor receptor- 82.2 5 0.00017 30.5 7.2 74 3-78 12-95 (100)
216 1v92_A NSFL1 cofactor P47; 3-h 79.7 3.9 0.00013 25.9 5.1 38 153-192 5-42 (46)
217 4eut_A Serine/threonine-protei 79.2 8.4 0.00029 34.9 9.1 54 11-67 322-377 (396)
218 2ns5_A Partitioning-defective 79.2 13 0.00044 27.4 8.3 72 1-74 3-81 (85)
219 2cu3_A Unknown function protei 79.0 3 0.0001 28.5 4.6 55 8-73 4-58 (64)
220 3e7l_A Transcriptional regulat 77.2 3.8 0.00013 27.8 4.7 42 145-196 4-45 (63)
221 4dbg_B Ring finger protein 31; 76.1 2.4 8.2E-05 35.0 3.9 28 165-192 72-99 (162)
222 1fm0_D Molybdopterin convertin 75.8 11 0.00037 26.4 7.1 56 12-73 18-75 (81)
223 4g3o_A E3 ubiquitin-protein li 74.9 6.5 0.00022 27.0 5.2 41 150-194 14-56 (58)
224 2kvr_A Ubiquitin carboxyl-term 74.2 2.8 9.6E-05 33.3 3.8 32 14-48 59-90 (130)
225 2dal_A Protein KIAA0794; FAS a 73.7 4.8 0.00016 27.7 4.4 39 152-193 14-53 (62)
226 2g1e_A Hypothetical protein TA 72.4 13 0.00043 26.6 6.8 59 14-73 18-84 (90)
227 3qa8_A MGC80376 protein; kinas 71.0 5.2 0.00018 40.1 5.8 64 10-76 321-393 (676)
228 1rws_A Hypothetical protein PF 70.7 1.8 6.3E-05 30.8 1.8 48 14-73 24-71 (77)
229 1wgy_A RAP guanine nucleotide 69.5 23 0.00078 27.0 7.8 68 5-75 14-86 (104)
230 2eel_A Cell death activator CI 64.3 21 0.00073 26.5 6.5 50 21-76 28-79 (91)
231 2c7h_A RBBP6, retinoblastoma-b 62.1 20 0.00069 26.4 6.0 34 2-35 8-43 (86)
232 1g2h_A Transcriptional regulat 61.8 4.1 0.00014 27.6 2.0 26 168-196 21-46 (61)
233 2ekf_A Ancient ubiquitous prot 60.6 37 0.0013 23.4 6.7 41 150-194 10-52 (61)
234 3hvz_A Uncharacterized protein 60.4 37 0.0013 24.2 7.2 63 2-76 7-69 (78)
235 2inc_C TOUB protein; DIIRON, 4 59.8 41 0.0014 24.6 7.2 62 13-74 15-81 (83)
236 2ejs_A Autocrine motility fact 59.5 22 0.00076 24.2 5.4 41 150-194 10-52 (58)
237 2ylm_A Ubiquitin carboxyl-term 58.3 32 0.0011 33.2 8.5 58 12-72 353-418 (530)
238 3ge3_C Toluene-4-monooxygenase 56.4 32 0.0011 25.2 6.1 62 13-74 17-82 (84)
239 3w1s_C Ubiquitin-like protein 56.2 47 0.0016 24.5 7.2 58 14-76 26-86 (91)
240 2kmc_A Fermitin family homolog 56.1 64 0.0022 24.4 9.1 73 2-75 21-99 (102)
241 3au4_A Myosin-X; protein-prote 55.4 26 0.00089 33.7 7.3 58 1-61 217-280 (555)
242 2kna_A Baculoviral IAP repeat- 54.3 15 0.00051 27.9 4.3 36 156-194 30-72 (104)
243 4gdk_A Ubiquitin-like protein 52.8 34 0.0012 25.3 6.0 60 14-76 23-86 (91)
244 2hj1_A Hypothetical protein; s 52.4 19 0.00066 26.9 4.6 59 11-74 26-84 (97)
245 2dzl_A Protein FAM100B; UBA-li 52.1 31 0.0011 23.9 5.4 37 155-194 19-56 (66)
246 1f2r_I Inhibitor of caspase-ac 51.5 28 0.00096 26.4 5.4 50 21-76 37-90 (100)
247 1eo6_A GATE-16, golgi-associat 50.0 56 0.0019 25.1 7.1 59 15-76 49-111 (117)
248 2r2q_A Gamma-aminobutyric acid 49.3 51 0.0017 25.0 6.7 58 15-75 48-109 (110)
249 3pvl_A Myosin VIIA isoform 1; 49.2 35 0.0012 33.9 7.2 46 1-48 264-309 (655)
250 1v8c_A MOAD related protein; r 49.2 48 0.0016 27.1 7.0 56 14-73 17-81 (168)
251 1eto_A FIS, factor for inversi 49.0 10 0.00035 28.3 2.6 27 168-196 58-84 (98)
252 1vdl_A Ubiquitin carboxyl-term 48.7 72 0.0025 22.9 7.5 41 153-194 24-64 (80)
253 2qho_B E3 ubiquitin-protein li 48.4 50 0.0017 21.8 5.4 38 154-194 10-49 (53)
254 2dam_A ETEA protein; KIAA0887, 48.2 41 0.0014 23.2 5.5 43 151-194 16-58 (67)
255 2dhz_A RAP guanine nucleotide 48.2 50 0.0017 25.8 6.5 64 9-75 18-92 (120)
256 1oai_A Nuclear RNA export fact 48.1 47 0.0016 22.5 5.6 44 152-198 6-55 (59)
257 3h9d_A ATG8, microtubule-assoc 47.7 74 0.0025 24.6 7.4 59 15-76 52-114 (119)
258 4gmv_A RAS-associated and plec 46.6 60 0.002 28.8 7.7 68 3-73 34-112 (281)
259 3hk0_A Growth factor receptor- 46.2 33 0.0011 30.0 5.9 57 3-62 11-74 (256)
260 3cz6_A DNA-binding protein RAP 45.8 19 0.00065 29.8 3.8 46 150-198 60-112 (168)
261 2zjd_A Microtubule-associated 45.6 52 0.0018 25.9 6.3 58 15-75 57-119 (130)
262 3r8s_T 50S ribosomal protein L 45.3 49 0.0017 24.5 5.8 41 11-54 28-69 (93)
263 3rui_B Autophagy-related prote 44.9 82 0.0028 24.3 7.3 59 15-76 51-113 (118)
264 1ntc_A Protein (nitrogen regul 44.3 8.3 0.00028 28.1 1.4 27 168-196 51-77 (91)
265 3m95_A Autophagy related prote 43.9 65 0.0022 25.2 6.6 59 15-76 57-119 (125)
266 1wz3_A Autophagy 12B, ATG12B, 42.9 53 0.0018 24.4 5.7 58 14-76 31-91 (96)
267 1umq_A Photosynthetic apparatu 42.4 14 0.00048 26.7 2.3 27 168-196 41-67 (81)
268 1q1o_A Cell division control p 42.2 30 0.001 26.1 4.2 26 10-35 22-47 (98)
269 2jx5_A GLUB(S27A); ubiquitin, 41.8 79 0.0027 21.4 7.0 52 1-60 1-52 (69)
270 3e21_A HFAF1, FAS-associated f 41.8 39 0.0013 21.7 4.1 35 152-189 4-40 (45)
271 3u52_E Phenol hydroxylase comp 41.7 96 0.0033 24.1 7.1 61 13-73 40-107 (119)
272 1cuk_A RUVA protein; DNA repai 40.5 42 0.0014 28.3 5.4 25 153-180 160-184 (203)
273 2ztd_A Holliday junction ATP-d 40.3 15 0.00051 31.5 2.6 25 153-180 164-188 (212)
274 1n62_A Carbon monoxide dehydro 38.5 23 0.0008 29.0 3.4 28 1-29 4-31 (166)
275 2nvu_B Maltose binding protein 38.5 44 0.0015 33.6 6.1 61 12-73 713-789 (805)
276 3hrd_D Nicotinate dehydrogenas 37.9 23 0.0008 28.9 3.3 27 1-28 4-30 (160)
277 1t3q_A Quinoline 2-oxidoreduct 36.6 25 0.00087 28.6 3.3 28 1-29 10-37 (168)
278 3tve_T 50S ribosomal protein L 36.5 67 0.0023 23.7 5.4 41 10-53 21-62 (92)
279 4fp9_B Mterf domain-containing 36.4 25 0.00086 32.0 3.6 44 151-197 44-92 (335)
280 2ylm_A Ubiquitin carboxyl-term 36.2 28 0.00094 33.7 4.0 70 3-75 133-217 (530)
281 3lxf_A Ferredoxin; iron, iron- 35.6 41 0.0014 24.9 4.1 27 2-28 2-28 (104)
282 1ffv_A CUTS, iron-sulfur prote 34.6 30 0.001 28.3 3.4 27 2-29 5-31 (163)
283 4a6q_A Histone deacetylase com 32.5 1.3E+02 0.0043 24.2 6.7 64 12-77 55-140 (143)
284 2zjr_Q 50S ribosomal protein L 30.4 56 0.0019 24.3 4.0 38 12-52 24-62 (95)
285 2v1y_A Phosphatidylinositol-4, 29.9 72 0.0025 24.4 4.7 66 5-73 24-102 (108)
286 2lva_A Ubiquitin carboxyl-term 35.5 11 0.00039 29.7 0.0 40 154-194 19-58 (129)
287 3chb_D Cholera toxin; toxin/re 29.1 67 0.0023 23.6 4.1 32 3-34 39-70 (104)
288 3kvh_A Protein syndesmos; NUDT 29.0 55 0.0019 28.0 4.2 44 147-192 160-203 (214)
289 2cu1_A Mitogen-activated prote 28.3 1.5E+02 0.0051 22.4 6.0 44 3-52 9-53 (103)
290 2i1s_A Hypothetical protein; m 28.2 1.7E+02 0.0057 23.9 7.1 22 14-35 25-46 (188)
291 3tca_A Amyloid beta A4 precurs 27.7 1.1E+02 0.0039 25.9 6.3 34 3-36 37-70 (291)
292 1pqs_A Cell division control p 27.6 50 0.0017 23.6 3.2 36 12-50 3-43 (77)
293 1rm6_C 4-hydroxybenzoyl-COA re 27.5 38 0.0013 27.5 2.9 27 3-30 5-31 (161)
294 1ibx_B Chimera of IGG binding 25.6 40 0.0014 27.2 2.6 49 21-75 82-134 (145)
295 1ixr_A Holliday junction DNA h 25.4 15 0.00051 30.9 0.0 26 153-181 146-171 (191)
296 1pgy_A SWA2P; UBA, ubiquitin, 24.6 41 0.0014 21.7 2.0 25 154-195 8-32 (47)
297 2wlb_A ETP1-FD, electron trans 23.9 84 0.0029 22.8 4.0 28 2-29 5-32 (103)
298 2nnz_A Hypothetical protein; b 23.8 31 0.0011 28.0 1.6 28 1-29 30-60 (153)
299 2lgx_A Fermitin family homolog 23.6 34 0.0012 26.3 1.7 71 3-75 29-102 (112)
300 2yrv_A AT-rich interactive dom 23.6 39 0.0013 26.3 2.1 26 173-201 78-104 (117)
301 2bt6_A Adrenodoxin 1; rutheniu 23.4 69 0.0023 23.5 3.5 26 2-27 8-33 (108)
302 2kkc_A Sequestosome-1; P62, PB 23.1 1.2E+02 0.004 22.8 4.7 28 21-50 42-69 (102)
303 2ktr_A Sequestosome-1; autopha 22.3 1.1E+02 0.0036 23.8 4.4 28 21-50 57-84 (117)
304 3t6p_A Baculoviral IAP repeat- 22.3 54 0.0018 29.9 3.1 37 155-194 121-164 (345)
305 3k6g_A Telomeric repeat-bindin 22.1 1.3E+02 0.0046 22.8 4.7 37 156-195 16-53 (111)
306 2kw6_A Cyclin-dependent kinase 21.9 38 0.0013 23.6 1.5 36 150-195 10-45 (65)
307 3fe3_A MAP/microtubule affinit 21.7 1.1E+02 0.0036 26.7 5.0 37 153-192 289-325 (328)
308 1uwm_A Ferredoxin VI, FDVI; el 21.3 1.1E+02 0.0039 22.1 4.3 27 1-27 1-27 (106)
309 1ltr_D ETB-R2, heat-labIle ent 21.2 81 0.0028 23.5 3.3 32 3-34 38-69 (113)
310 1tt5_B Ubiquitin-activating en 21.0 32 0.0011 32.5 1.3 60 14-73 344-418 (434)
311 1d4b_A CIDE B, human cell deat 20.8 38 0.0013 26.6 1.5 48 21-75 54-103 (122)
312 1ojl_A Transcriptional regulat 20.5 46 0.0016 29.2 2.2 27 168-196 268-294 (304)
313 2hjj_A Hypothetical protein YK 20.4 54 0.0018 24.0 2.1 19 165-184 9-27 (87)
No 1
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A
Probab=100.00 E-value=5.3e-49 Score=371.71 Aligned_cols=238 Identities=33% Similarity=0.567 Sum_probs=155.8
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCcccccccCCCCeEEEEeccCCCC
Q 023989 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVMLSKSKTL 80 (274)
Q Consensus 1 M~I~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~~p~~~qkLI~~GK~L~D~~tL~d~~I~~~~~I~v~v~k~k~~ 80 (274)
|+|+||+++|++|.|+|++++||.+||++|++++++..+++++|||||+||+|+|+++|++|+|+++++|++|++|.+..
T Consensus 8 M~I~VKtl~Gk~~~leV~~~~TV~~LK~~I~~~~~~~gip~~~QrLiy~GK~L~D~~tL~dygI~~gstIv~lv~k~~~~ 87 (368)
T 1oqy_A 8 VTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDYRIDEKNFVVVMVTKTKAG 87 (368)
T ss_dssp CCEEEEETTTEEEEECCCTTCBHHHHHHHHHHHTCSSSCCSTEEEEESSSSEECSSSBTTTTCCCTTSCEEEEEECCCSS
T ss_pred EEEEEEeCCCCEEEEEeCCCChHHHHHHHHHHHhCcCCCChhheEEEECCeecCCcCCHHHcCCCCCCEEEEEEecCCCC
Confidence 89999999999999999999999999999999532112999999999999999999999999999999997777776644
Q ss_pred CC-CCCCCCCCCCCCCCCC--C--CCCCCCCCCCCC--CC-CC-CCCCCCCCCCCcCccccCCCCCccccccccccCCCC
Q 023989 81 GS-AGASSAQPAHTTPPTT--A--PSSNSTPPQEAS--VP-PP-APTPSIPASNVTSNVTAANANSDTYGQAASNLVAGN 151 (274)
Q Consensus 81 ~~-~~~~~~~~~~~~~~~~--~--~~~~~~p~~~p~--~~-~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~s~l~~g~ 151 (274)
+. +.+..+.+.+.+.+.+ . ..+.+.++..+. .. +. ...++..+. .+....+.......++.+.|+||+|+
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-~~~~~~~~~~~~~~~~~~~s~l~~g~ 166 (368)
T 1oqy_A 88 QGTSAPPEASPTAAPESSTSFPPAPTSGMSHPPPAAREDKSPSEESAPTTSPE-SVSGSVPSSGSSGREEDAASTLVTGS 166 (368)
T ss_dssp SCCCCCSSCCCCCSSSCCCSCCCSSSCCCCCCCSSSSCCCCCSCSCCCCSSTT-CSCCCSCSCCCSCCCCCCCTTTCCTT
T ss_pred CCCCCCcccCCCCCccccCCCCCCCCCCCCCCCccccccCCccccCCCCCCCC-cccccccccccccccccccccccCCc
Confidence 33 1111111111110000 0 000000000000 00 00 000000000 00000011111233566789999999
Q ss_pred chHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCHHHHHHHHHcCCCCcccccCCCCCCCCCcccccccCCCCCCCCCCCCC
Q 023989 152 DLEQTIQQIMDMGGGTWDKETVTRALQAAYNNPERAVDYLYSGIPETAEVAVPVAHFPASQAAETGAAGAAPVSGVPNSS 231 (274)
Q Consensus 152 ~~e~~i~~i~eMG~~~f~r~qv~~ALrAafnNpdrAvEyL~~GIP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (274)
++|++|++||+|| |+|++|++|||++|||+|||||||++|||++.+...+ ... ... . .+
T Consensus 167 ~~~~~i~~l~~MG---f~~~~~~~AL~a~~nn~~~A~e~L~~gip~~~~~~~~----~~~-----~~~----~--~~--- 225 (368)
T 1oqy_A 167 EYETMLTEIMSMG---YERERVVAALRASYNNPHRAVEYLLTGIPGSPEPEHG----SVQ-----ESQ----V--SE--- 225 (368)
T ss_dssp THHHHHHHHHTTT---CCSHHHHHHHHHSCSSTTHHHHTTTTSSTTCSSCCCC----CCC-----CCC----S--SC---
T ss_pred chHHHHHHHHHcC---CCHHHHHHHHHHcCCCHHHHHHHHHhCCCcccccccC----Ccc-----ccc----c--cc---
Confidence 9999999999999 9999999999999999999999999999997543210 000 000 0 00
Q ss_pred CCCCCcccccCCCCCCCCCchHHhhccHHHHHHHHHHH
Q 023989 232 PLNMFPQETLSGAPAGGLGSLDFLRNNQQVWSLLCCQL 269 (274)
Q Consensus 232 ~~~lf~~~~~~~~~~~~~~~l~~Lr~~pqf~~lRq~~~ 269 (274)
. .+.++++.++|+|||++|||+|||++|+
T Consensus 226 --------~-~~~~~~~~~~l~~Lr~~pqf~~lR~~vq 254 (368)
T 1oqy_A 226 --------Q-PATEAAGENPLEFLRDQPQFQNMRQVIQ 254 (368)
T ss_dssp --------C-CCSSCCSCCTTHHHHHSHHHHHHHHSTT
T ss_pred --------c-cCccccccchHHHHhcChHHHHHHHHHH
Confidence 0 0112235679999999999999999985
No 2
>3m62_B UV excision repair protein RAD23; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=99.83 E-value=5.9e-21 Score=150.30 Aligned_cols=77 Identities=27% Similarity=0.433 Sum_probs=70.9
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCcccccccCCCCeEEEEeccCCCC
Q 023989 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVMLSKSKTL 80 (274)
Q Consensus 1 M~I~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~~p~~~qkLI~~GK~L~D~~tL~d~~I~~~~~I~v~v~k~k~~ 80 (274)
|+|+||+++|+.|.|+|++++||.+||++|+++.| +++++|||||+||+|+|+++|++|||++|++|+|++++++..
T Consensus 2 m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~g---ip~~~QrLi~~Gk~L~D~~tL~~~~i~~g~~i~lv~~~~~~~ 78 (106)
T 3m62_B 2 VSLTFKNFKKEKVPLDLEPSNTILETKTKLAQSIS---CEESQIKLIYSGKVLQDSKTVSECGLKDGDQVVFMVSQKKST 78 (106)
T ss_dssp -CEEEECTTCCEEEECCCTTSBHHHHHHHHHHTTT---SCGGGCEEEETTEECCTTSBTTTTTCCTTCEEEEECCC----
T ss_pred EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHC---CChhhEEEEECCEECCCcCCHHHcCCCCCCEEEEEEcCCCCC
Confidence 89999999999999999999999999999999999 999999999999999999999999999999999999987644
No 3
>1uel_A HHR23B, UV excision repair protein RAD23 homolog B; UBL, UIM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.81 E-value=1.6e-19 Score=139.09 Aligned_cols=77 Identities=42% Similarity=0.714 Sum_probs=73.2
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHH---hCCCCCCCCCeEEEeCCeecCCCCcccccccCCCCeEEEEeccC
Q 023989 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDV---QGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVMLSKS 77 (274)
Q Consensus 1 M~I~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~---~g~~~~p~~~qkLI~~GK~L~D~~tL~d~~I~~~~~I~v~v~k~ 77 (274)
|+|+||+++|+.+.|+|++++||.+||++|++. .| +++++|||+|+||.|+|+++|++|||++|++|+|+++++
T Consensus 1 M~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~~~~g---ip~~~qrLi~~Gk~L~D~~tL~~ygI~~g~~i~l~~~~~ 77 (95)
T 1uel_A 1 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDA---FPVAGQKLIYAGKILNDDTALKEYKIDEKNFVVVMVTKP 77 (95)
T ss_dssp CEEEEEETTCCEEEEECCTTSBHHHHHHHHHHHHCTTT---CCTTTEEEEETTEECCTTSBGGGGTCCSSSEEEEEESSC
T ss_pred CEEEEEeCCCCEEEEEECCCCHHHHHHHHHHhhcccCC---CChhhEEEEECCEECCCcCcHHHCCCCCCCEEEEEEeCC
Confidence 899999999999999999999999999999999 67 999999999999999999999999999999999999876
Q ss_pred CCC
Q 023989 78 KTL 80 (274)
Q Consensus 78 k~~ 80 (274)
+..
T Consensus 78 ~~~ 80 (95)
T 1uel_A 78 KAV 80 (95)
T ss_dssp CCC
T ss_pred CCC
Confidence 644
No 4
>4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A
Probab=99.81 E-value=7.7e-20 Score=138.83 Aligned_cols=76 Identities=24% Similarity=0.312 Sum_probs=71.2
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCcccccccCCCCeEEEEeccCCCC
Q 023989 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVMLSKSKTL 80 (274)
Q Consensus 1 M~I~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~~p~~~qkLI~~GK~L~D~~tL~d~~I~~~~~I~v~v~k~k~~ 80 (274)
|+|+||+++|+.|.|+|++++||.+||++|+++.| +++++|||||+||.|+|+++|.+|+| ++++|||+++.+..+
T Consensus 6 m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~g---ip~~~qrLi~~Gk~L~d~~tL~~~~i-~g~~i~l~~~~~~~~ 81 (90)
T 4dwf_A 6 LEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVS---IPSEKQRLIYQGRVLQDDKKLQEYNV-GGKVIHLVERAPPQT 81 (90)
T ss_dssp EEEEEEETTCCEEEEEEETTCBHHHHHHHHHHHHT---CCGGGEEEEETTEECCTTSBGGGGTC-TTEEEEEEECCCC--
T ss_pred EEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHhC---CCHHHEEEEECCeECCCCCCHHHcCC-CCcEEEEEecCCCCC
Confidence 79999999999999999999999999999999999 99999999999999999999999999 899999999865543
No 5
>4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B
Probab=99.80 E-value=1.9e-19 Score=136.72 Aligned_cols=77 Identities=38% Similarity=0.531 Sum_probs=72.5
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCcccccccCCCCeEEEEeccCCCC
Q 023989 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVMLSKSKTL 80 (274)
Q Consensus 1 M~I~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~~p~~~qkLI~~GK~L~D~~tL~d~~I~~~~~I~v~v~k~k~~ 80 (274)
|+|+||+++|++|.|+|++++||.+||++|+++.| +|+++|||+|+||.|+|+++|++|+|++|++|+++++.+...
T Consensus 1 M~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~g---ip~~~qrLi~~Gk~L~D~~tL~~~~i~~g~~l~l~~rl~Gg~ 77 (88)
T 4fbj_B 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEG---IPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLALRGGG 77 (88)
T ss_dssp CEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHC---CCGGGCEEEETTEECCTTSBTTTTTCCTTCEEEEECBCC---
T ss_pred CEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHC---cChhHEEEEECCeECCCCCcHHHcCCCCCCEEEEEEECCCCC
Confidence 89999999999999999999999999999999999 999999999999999999999999999999999999887644
No 6
>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens}
Probab=99.80 E-value=2.3e-19 Score=132.86 Aligned_cols=74 Identities=20% Similarity=0.275 Sum_probs=71.6
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCcccccccCCCCeEEEEeccC
Q 023989 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVMLSKS 77 (274)
Q Consensus 1 M~I~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~~p~~~qkLI~~GK~L~D~~tL~d~~I~~~~~I~v~v~k~ 77 (274)
|+|+||+++|+.+.|+|++++||.+||++|+++.| +|+++|||+|+||.|+|+++|++|+|++|++|+++++.+
T Consensus 5 m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~g---ip~~~qrL~~~G~~L~d~~tL~~~~i~~~~~l~l~~rl~ 78 (79)
T 3phx_B 5 LSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEG---VQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLRLR 78 (79)
T ss_dssp EEEEEECTTSCEEEEEECTTSBHHHHHHHHHHHHT---CCGGGEEEEETTEECCTTSBGGGGTCCTTCEEEEEECCB
T ss_pred EEEEEEeCCCCEEEEEECCcChHHHHHHHHHhhcC---CCHHHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEecC
Confidence 78999999999999999999999999999999999 999999999999999999999999999999999999764
No 7
>2wyq_A HHR23A, UV excision repair protein RAD23 homolog A; DNA binding protein, DNA excision repair, proteasomal degrad polyubiquitin; 1.65A {Homo sapiens} PDB: 1p98_A 1p9d_U 1p1a_A
Probab=99.80 E-value=2.3e-19 Score=134.39 Aligned_cols=76 Identities=38% Similarity=0.698 Sum_probs=69.9
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHH---hCCCCCCCCCeEEEeCCeecCCCCcccccccCCCCeEEEEeccC
Q 023989 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDV---QGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVMLSKS 77 (274)
Q Consensus 1 M~I~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~---~g~~~~p~~~qkLI~~GK~L~D~~tL~d~~I~~~~~I~v~v~k~ 77 (274)
|+|+||+++|+.+.++|++++||.+||++|+++ .| +++++|||+|+||.|+|+++|++|+|++|++|+|+++++
T Consensus 6 m~i~vk~~~g~~~~~~v~~~~TV~~lK~~i~~~~~~~g---ip~~~qrLi~~Gk~L~D~~tL~~~~i~~g~~i~l~~~~~ 82 (85)
T 2wyq_A 6 VTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDA---FPVAGQKLIYAGKILSDDVPIRDYRIDEKNFVVVMVTKT 82 (85)
T ss_dssp EEEEEEETTSCEEEEEECTTSBHHHHHHHHHHHHCTTT---CCGGGEEEEETTEECCTTSBGGGGCCCTTSEEEEEEC--
T ss_pred EEEEEEECCCCEEEEEECCCCCHHHHHHHHHhhccccC---CCHHHeEEEECCEECcCCCCHHHcCCCCCCEEEEEEcCC
Confidence 789999999999999999999999999999998 67 999999999999999999999999999999999999887
Q ss_pred CC
Q 023989 78 KT 79 (274)
Q Consensus 78 k~ 79 (274)
++
T Consensus 83 ~~ 84 (85)
T 2wyq_A 83 KA 84 (85)
T ss_dssp --
T ss_pred CC
Confidence 64
No 8
>4a20_A Ubiquitin-like protein MDY2; protein binding, GET-pathway, tail-anchored proteins; 1.78A {Saccharomyces cerevisiae} PDB: 2lxc_A 4goc_A
Probab=99.79 E-value=1.4e-19 Score=140.96 Aligned_cols=74 Identities=30% Similarity=0.522 Sum_probs=69.2
Q ss_pred CEEEEEeCCCcEEEE--EeCCCCCHHHHHHHH-HHHhCCCCCCCCCeEEEeCCeecCCCCccccccc-CCCCeEEEEecc
Q 023989 1 MKLTVKTLKGSHFEI--RVQPSDTVMAVKKNI-EDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKV-SEDGFLVVMLSK 76 (274)
Q Consensus 1 M~I~VKtl~g~~~~i--eV~~~~TV~~LK~kI-~~~~g~~~~p~~~qkLI~~GK~L~D~~tL~d~~I-~~~~~I~v~v~k 76 (274)
|+|+||+++|+.|.+ +|++++||.+||++| ++..| +++++|||||+||+|+|+.+|++|+| ++|++|+||+++
T Consensus 20 m~I~VKtl~g~~~~i~v~v~~~~TV~~lK~~I~~~~~g---ip~~~QrLi~~Gk~L~D~~tL~dy~I~~~g~ti~lmvsk 96 (98)
T 4a20_A 20 VHLTLKKIQAPKFSIEHDFSPSDTILQIKQHLISEEKA---SHISEIKLLLKGKVLHDNLFLSDLKVTPANSTITVMIKP 96 (98)
T ss_dssp EEEEEEECSSSCEEEEEEECTTCBHHHHHHHHHHTTSC---SCGGGEEEEETTEEECTTCBGGGSCCBTTBCEEEEEECC
T ss_pred EEEEEEcCCCCEEEEEEecCCCChHHHHHHHHHHHhcC---CChhhEEEEECCEECcCcCCHHHcCcCCCCCEEEEEEeC
Confidence 789999999998777 566999999999999 77778 99999999999999999999999999 999999999987
Q ss_pred C
Q 023989 77 S 77 (274)
Q Consensus 77 ~ 77 (274)
+
T Consensus 97 p 97 (98)
T 4a20_A 97 N 97 (98)
T ss_dssp C
T ss_pred C
Confidence 5
No 9
>3v6c_B Ubiquitin; structural genomics, structural genomics consortium, SGC, UB protease, hydrolase-signaling protein complex; 1.70A {Homo sapiens} PDB: 3v6e_B
Probab=99.79 E-value=3.5e-19 Score=135.79 Aligned_cols=74 Identities=41% Similarity=0.623 Sum_probs=71.6
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCcccccccCCCCeEEEEeccC
Q 023989 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVMLSKS 77 (274)
Q Consensus 1 M~I~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~~p~~~qkLI~~GK~L~D~~tL~d~~I~~~~~I~v~v~k~ 77 (274)
|+|+||+++|+.|.|+|++++||.+||++|+++.| +++++|||+|+||.|+|+++|.+|||++|++|+|+++.+
T Consensus 18 m~i~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~g---ip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~rlr 91 (91)
T 3v6c_B 18 MQIFVNTLTGTHITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 91 (91)
T ss_dssp EEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHC---CCGGGCEEEETTEECCTTCBTGGGTCCTTCEEEEECCCC
T ss_pred EEEEEEeCCCCEEEEEECCCCCHHHHHHHHHhhhC---CChhhEEEEECCeECCCcCcHHHCCCCCCCEEEEEEecC
Confidence 79999999999999999999999999999999999 999999999999999999999999999999999998753
No 10
>2kk8_A Uncharacterized protein AT4G05270; solution arabidopsis thaliana, uncharacterized putative protein, NESG, structural genomics; NMR {Arabidopsis thaliana}
Probab=99.79 E-value=2.7e-19 Score=135.17 Aligned_cols=72 Identities=35% Similarity=0.531 Sum_probs=70.3
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCee-cCCCCcccccccCCCCeEEEEec
Q 023989 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKV-LKDETTLADNKVSEDGFLVVMLS 75 (274)
Q Consensus 1 M~I~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~~p~~~qkLI~~GK~-L~D~~tL~d~~I~~~~~I~v~v~ 75 (274)
|+|+||++.|+.+.|+|++++||.+||++|+++.| +++++|||+|+||. |+|+++|++|+|++|++|+|+++
T Consensus 11 ~~i~vk~l~g~~~~l~v~~~~TV~~LK~~I~~~~g---ip~~~QrLi~~Gk~lL~D~~tL~~y~I~~gs~i~lv~~ 83 (84)
T 2kk8_A 11 MKFLVENLNGSSFELEVDYRDTLLVVKQKIERSQH---IPVSKQTLIVDGIVILREDLTVEQCQIVPTSDIQLEVS 83 (84)
T ss_dssp EEEEEEETTSCEEEEEECTTSBHHHHHHHHHHHHT---CCGGGEEEEETTEECCCSSSBHHHHTCCTTSCEEEEEC
T ss_pred eEEEEEecCCcEEEEEECCCChHHHHHHHHHHHHC---cChHHEEEEECCEEecCCcCCHHHcCCCCCCEEEEEEc
Confidence 89999999999999999999999999999999999 99999999999999 99999999999999999999875
No 11
>3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A 2kx0_A
Probab=99.78 E-value=8.5e-19 Score=134.43 Aligned_cols=76 Identities=39% Similarity=0.570 Sum_probs=72.8
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCcccccccCCCCeEEEEeccCCC
Q 023989 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVMLSKSKT 79 (274)
Q Consensus 1 M~I~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~~p~~~qkLI~~GK~L~D~~tL~d~~I~~~~~I~v~v~k~k~ 79 (274)
|+|+||+++|+.|.|+|++++||.+||++|++..| +++++|||+|+|+.|+|+++|.+|+|+++++|+|+++.+..
T Consensus 2 m~i~vk~~~g~~~~~~v~~~~TV~~LK~~i~~~~g---ip~~~qrL~~~G~~L~d~~tL~~~~i~~~~~i~l~~r~~gG 77 (96)
T 3k9o_B 2 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGY 77 (96)
T ss_dssp CEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHC---CCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECCCC-
T ss_pred cEEEEEeCCCCEEEEEECCCCCHHHHHHHHHhhhC---CChhHEEEEECCEECCCCCcHHHcCCCCCCEEEEEEEcCCC
Confidence 89999999999999999999999999999999999 99999999999999999999999999999999999987654
No 12
>2lxa_A Ubiquitin-like protein MDY2; ubiquitin-like domain, protein-protein interaction, SGT2 BIN domain, GET pathway, protein binding; NMR {Saccharomyces cerevisiae}
Probab=99.78 E-value=1.9e-19 Score=137.25 Aligned_cols=74 Identities=30% Similarity=0.519 Sum_probs=69.3
Q ss_pred CEEEEEeCCCcEEEEEeC--CCCCHHHHHHHH-HHHhCCCCCCCCCeEEEeCCeecCCCCccccccc-CCCCeEEEEecc
Q 023989 1 MKLTVKTLKGSHFEIRVQ--PSDTVMAVKKNI-EDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKV-SEDGFLVVMLSK 76 (274)
Q Consensus 1 M~I~VKtl~g~~~~ieV~--~~~TV~~LK~kI-~~~~g~~~~p~~~qkLI~~GK~L~D~~tL~d~~I-~~~~~I~v~v~k 76 (274)
|+|+||+++|++|.|+|+ +++||.+||++| ++..| +|+++|||||+||+|+|+.+|++|+| ++|++|+|++++
T Consensus 2 mqI~VKtl~g~~~~i~v~v~~~~TV~~lK~~I~~~~~g---ip~~~QrLi~~Gk~L~D~~tL~~y~I~~~~stl~v~~~~ 78 (87)
T 2lxa_A 2 VHLTLKKIQAPKFSIEHDFSPSDTILQIKQHLISEEKA---SHISEIKLLLKGKVLHDNLFLSDLKVTPANSTITVMIKP 78 (87)
T ss_dssp CEEEEEECSSSCEECCEECCTTCBHHHHHHHHHHTTSC---SSSTTEEEEETTEECCTTCBHHHHCCCGGGCEEEEEECC
T ss_pred EEEEEEcCCCCEEEEEEcCCCCCcHHHHHHHHHHHhcC---CChHHEEEEECCEECcCcCCHHHcCCCCCCCEEEEEcCC
Confidence 899999999999988755 999999999999 88889 99999999999999999999999999 699999999875
Q ss_pred C
Q 023989 77 S 77 (274)
Q Consensus 77 ~ 77 (274)
.
T Consensus 79 ~ 79 (87)
T 2lxa_A 79 N 79 (87)
T ss_dssp C
T ss_pred C
Confidence 3
No 13
>1wx7_A Ubiquilin 3; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.78 E-value=1e-18 Score=137.14 Aligned_cols=75 Identities=28% Similarity=0.334 Sum_probs=70.6
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCcccccccCCCCeEEEEeccCCC
Q 023989 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVMLSKSKT 79 (274)
Q Consensus 1 M~I~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~~p~~~qkLI~~GK~L~D~~tL~d~~I~~~~~I~v~v~k~k~ 79 (274)
|+|+||+.+|+ |.|+|++++||.+||++|+++.| +++++|||+|+||+|+|+++|.+|+|+++++|||+++.+..
T Consensus 18 m~I~Vk~~~g~-~~l~v~~~~TV~~LK~~I~~~~g---ip~~~qrLi~~Gk~L~D~~tL~~~gi~~g~~i~l~~~~~~~ 92 (106)
T 1wx7_A 18 IKVTVKTPKDK-EDFSVTDTCTIQQLKEEISQRFK---AHPDQLVLIFAGKILKDPDSLAQCGVRDGLTVHLVIKRQHR 92 (106)
T ss_dssp EEEEEECSSCE-EEEEEETTCCHHHHHHHHHHHHT---CCTTTEEEEETTEECCTTSCHHHHTCCTTEEEEEEECCCCC
T ss_pred EEEEEEeCCCc-EEEEECCCCcHHHHHHHHHHHHC---cChhhEEEEECCEECCCcCcHHHcCCCCCCEEEEEEcCCCC
Confidence 78999998885 79999999999999999999999 99999999999999999999999999999999999987654
No 14
>3plu_A Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-1, SNU66, peptide binding protein; 1.40A {Saccharomyces cerevisiae} PDB: 3plv_A 1m94_A 1p0r_A
Probab=99.78 E-value=6.6e-19 Score=135.46 Aligned_cols=70 Identities=24% Similarity=0.316 Sum_probs=68.4
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCcccccccCCCCeEEEE
Q 023989 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVM 73 (274)
Q Consensus 1 M~I~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~~p~~~qkLI~~GK~L~D~~tL~d~~I~~~~~I~v~ 73 (274)
|+|+||++.|+++.|+|++++||.+||++|+++.| +|+++|||+|.||+|+|+.+|++|+|++|++|++.
T Consensus 22 IqI~Vk~~~Gkk~~v~v~p~DTI~~LK~~I~~k~G---ip~~qQrLif~Gk~LkD~~TL~dY~I~dgstLhL~ 91 (93)
T 3plu_A 22 IEVVVNDRLGKKVRVKCLGEDSVGDFKKVLSLQIG---TQPNKIVLQKGGSVLKDHISLEDYEVHDQTNLELY 91 (93)
T ss_dssp EEEEEECTTSCEEEEEEETTSBHHHHHHHHHHHHT---CCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEE
T ss_pred EEEEEECCCCCEEEEEECCcCHHHHHHHHHHHHhC---CCHHHEEEEeCCEEccCcCCHHHcCCCCCCEEEEE
Confidence 68999999999999999999999999999999999 99999999999999999999999999999999986
No 15
>3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: d.15.1.1 PDB: 3dbr_I 3dbl_I
Probab=99.77 E-value=9.2e-19 Score=131.74 Aligned_cols=74 Identities=39% Similarity=0.577 Sum_probs=71.6
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCcccccccCCCCeEEEEeccC
Q 023989 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVMLSKS 77 (274)
Q Consensus 1 M~I~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~~p~~~qkLI~~GK~L~D~~tL~d~~I~~~~~I~v~v~k~ 77 (274)
|+|+||+++|+.|.|+|++++||.+||++|+++.| +++++|||+|+||.|+|+++|.+|+|+++++|+|+++.+
T Consensus 13 m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~g---ip~~~qrL~~~G~~L~d~~tL~~~~i~~~~~i~l~~rl~ 86 (88)
T 3dbh_I 13 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEG---IPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLRLR 86 (88)
T ss_dssp EEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHC---CCGGGCCEEETTEECCTTSBGGGGTCCTTCEEEECCCCC
T ss_pred EEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHC---cCHHHEEEEECCeECCCCCcHHHcCCCCCCEEEEEEeCC
Confidence 78999999999999999999999999999999999 999999999999999999999999999999999998764
No 16
>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A
Probab=99.77 E-value=2e-18 Score=125.79 Aligned_cols=74 Identities=39% Similarity=0.583 Sum_probs=71.6
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCcccccccCCCCeEEEEeccC
Q 023989 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVMLSKS 77 (274)
Q Consensus 1 M~I~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~~p~~~qkLI~~GK~L~D~~tL~d~~I~~~~~I~v~v~k~ 77 (274)
|+|+||+.+|+.+.++|++++||.+||++|++..| +++++|||+|+||.|+|+.+|++|+|+++++|+++++.+
T Consensus 1 M~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~~---i~~~~q~L~~~g~~L~d~~tL~~~~i~~g~~i~l~~~~~ 74 (76)
T 1ndd_A 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEG---IPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLALR 74 (76)
T ss_dssp CEEEEECTTSCEEEEECCTTCBHHHHHHHHHHHHC---CCGGGEEEEETTEECCTTSBGGGGTCCTTCEEEEEECCC
T ss_pred CEEEEECCCCCEEEEEECCCChHHHHHHHHHHHHC---cChHHEEEEECCEECCCCCcHHHcCCCCCCEEEEEEeCC
Confidence 89999999999999999999999999999999999 999999999999999999999999999999999998764
No 17
>4hcn_B Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidase, NEDD8, protein binding; 2.60A {Saccharomyces cerevisiae}
Probab=99.77 E-value=1.3e-18 Score=134.74 Aligned_cols=74 Identities=39% Similarity=0.565 Sum_probs=71.9
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCcccccccCCCCeEEEEeccC
Q 023989 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVMLSKS 77 (274)
Q Consensus 1 M~I~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~~p~~~qkLI~~GK~L~D~~tL~d~~I~~~~~I~v~v~k~ 77 (274)
|+|+||+++|+.|.|+|++++||.+||++|+++.| +++++|||+|+||.|+|+++|.+|+|+++++|+|+++.+
T Consensus 23 m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~g---ip~~~qrLi~~Gk~L~D~~tL~~~~i~~g~~i~l~~rl~ 96 (98)
T 4hcn_B 23 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEG---IPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 96 (98)
T ss_dssp CEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHC---CCGGGCEEEETTEECCTTCBSGGGTCCTTEEEEEECBCS
T ss_pred EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHhC---CChhHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEecC
Confidence 89999999999999999999999999999999999 999999999999999999999999999999999998865
No 18
>2faz_A Ubiquitin-like containing PHD and ring finger DOM protein 1; cell cycle, DNA damage, DNA repair, DNA-binding, ligase, Met binding, nuclear protein; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=99.77 E-value=1.5e-18 Score=128.02 Aligned_cols=73 Identities=22% Similarity=0.350 Sum_probs=70.2
Q ss_pred CEEEEEeCCCcEE-EEE-eCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCcccccccCCCCeEEEEecc
Q 023989 1 MKLTVKTLKGSHF-EIR-VQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVMLSK 76 (274)
Q Consensus 1 M~I~VKtl~g~~~-~ie-V~~~~TV~~LK~kI~~~~g~~~~p~~~qkLI~~GK~L~D~~tL~d~~I~~~~~I~v~v~k 76 (274)
|+|+||+++|+.+ .|+ |++++||.+||++|+++.| +++++|||+|+||.|+|+++|++|+|++|++|+++++.
T Consensus 3 m~i~Vk~~~g~~~~~l~~v~~~~tv~~lK~~i~~~~g---ip~~~qrL~~~g~~L~d~~tL~~~~i~~g~~i~l~~r~ 77 (78)
T 2faz_A 3 MWIQVRTMDGRQTHTVDSLSRLTKVEELRRKIQELFH---VEPGLQRLFYRGKQMEDGHTLFDYEVRLNDTIQLLVRQ 77 (78)
T ss_dssp EEEEEEETTSSCEEEEEEECTTCBHHHHHHHHHHHHC---CCGGGEEEEETTEECCTTCBTTTTTCCTTCEEEEEECC
T ss_pred EEEEEEECCCCEEEEEeccCCCCCHHHHHHHHHHHHC---cChhhEEEEECCEECCCCCCHHHcCCCCCCEEEEEEeC
Confidence 8999999999985 999 9999999999999999999 99999999999999999999999999999999999875
No 19
>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=99.76 E-value=1.6e-18 Score=129.39 Aligned_cols=75 Identities=40% Similarity=0.579 Sum_probs=72.1
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCcccccccCCCCeEEEEeccCC
Q 023989 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVMLSKSK 78 (274)
Q Consensus 1 M~I~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~~p~~~qkLI~~GK~L~D~~tL~d~~I~~~~~I~v~v~k~k 78 (274)
|+|+||+++|+.+.|+|++++||.+||++|+++.+ +++++|||+|+||.|+|+++|++|+|+++++|+|+++.+.
T Consensus 4 m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~---ip~~~qrL~~~g~~L~d~~tL~~~~i~~~~~i~l~~rl~G 78 (85)
T 3n3k_B 4 MRIVVKTLMGRTIILEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLSDYNIHNHSALYLLLKLRG 78 (85)
T ss_dssp CEEEEECGGGCEEEEECCTTCBHHHHHHHHHHHHC---CCGGGEEEEETBEECCTTCBTTTTTCCTTCEEEEEECCC-
T ss_pred EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHC---CCHHHEEEEECCeECCCCCCHHHCCCCCCCEEEEEEeccC
Confidence 89999999999999999999999999999999999 9999999999999999999999999999999999998764
No 20
>1ttn_A DC-UBP, dendritic cell-derived ubiquitin-like protein; ubiquitin-like domain, solution structure, signaling protein; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.76 E-value=1.2e-18 Score=136.89 Aligned_cols=77 Identities=22% Similarity=0.402 Sum_probs=73.5
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCcccccccCCCCeEEEEeccCCCC
Q 023989 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVMLSKSKTL 80 (274)
Q Consensus 1 M~I~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~~p~~~qkLI~~GK~L~D~~tL~d~~I~~~~~I~v~v~k~k~~ 80 (274)
|+|+||+++|+.+.|+|++++||.+||.+|+.+.| +++++|||+|+||.|+|+++|++|||++|++|||+++++...
T Consensus 24 m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~g---ip~~~qrLi~~Gk~L~D~~tL~~ygI~~g~ti~lv~~~~~~~ 100 (106)
T 1ttn_A 24 CQLRLRLSTGKDLKLVVRSTDTVFHMKRRLHAAEG---VEPGSQRWFFSGRPLTDKMKFEELKIPKDYVVQVIVSQPVQN 100 (106)
T ss_dssp EEEEEEETTTEEEEEEECTTSHHHHHHHHHHHTTC---CCSTTCEEEETTEECCTTSHHHHCCCSSSCEEEEECCCSSCC
T ss_pred EEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHHC---cCcccEEEEECCEECCCCCcHHHcCCCCCCEEEEEEeCCCCC
Confidence 78999999999999999999999999999999999 999999999999999999999999999999999999876653
No 21
>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.76 E-value=2.1e-18 Score=127.70 Aligned_cols=73 Identities=29% Similarity=0.458 Sum_probs=70.6
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCcccccccCCCCeEEEEecc
Q 023989 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVMLSK 76 (274)
Q Consensus 1 M~I~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~~p~~~qkLI~~GK~L~D~~tL~d~~I~~~~~I~v~v~k 76 (274)
|+|+||+++|+.+.++|++++||.+||++|++..| +++++|||+|+||.|+|+++|++|||++|++|+|+++.
T Consensus 8 m~i~vk~~~g~~~~~~v~~~~tV~~LK~~i~~~~~---i~~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~~~ 80 (81)
T 2dzi_A 8 MQLTVKALQGRECSLQVPEDELVSTLKQLVSEKLN---VPVRQQRLLFKGKALADGKRLSDYSIGPNSKLNLVVKP 80 (81)
T ss_dssp EEEEEEETTSCEEEEEECSSCBHHHHHHHHHHHTC---CCTTTCEEEETTEECCTTSBGGGGTCCSSBCCEEECCC
T ss_pred EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHC---cCHHHEEEEECCeECCCCCcHHHcCCCCCCEEEEEEeC
Confidence 78999999999999999999999999999999999 99999999999999999999999999999999999875
No 22
>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ...
Probab=99.76 E-value=3.5e-18 Score=124.47 Aligned_cols=74 Identities=41% Similarity=0.596 Sum_probs=71.5
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCcccccccCCCCeEEEEeccC
Q 023989 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVMLSKS 77 (274)
Q Consensus 1 M~I~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~~p~~~qkLI~~GK~L~D~~tL~d~~I~~~~~I~v~v~k~ 77 (274)
|+|+||+.+|+.+.++|++++||.+||++|++..| +++++|||+|+||.|+|+.+|++|+|++|++|+++++.+
T Consensus 1 M~i~vk~~~g~~~~i~v~~~~tv~~lK~~i~~~~~---i~~~~q~L~~~g~~L~d~~tL~~~~i~~g~~i~l~~~~~ 74 (76)
T 3a9j_A 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLSDYNIQRESTLHLVLRLR 74 (76)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHC---CCGGGEEEEETTEECCTTCBTGGGTCCTTCEEEEEECCC
T ss_pred CEEEEEcCCCCEEEEEECCCCcHHHHHHHHHHHHC---cCHHHeEEEECCeECCCCCcHHHcCCCCCCEEEEEEeCC
Confidence 89999999999999999999999999999999999 999999999999999999999999999999999998764
No 23
>1uh6_A Ubiquitin-like 5; beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.76 E-value=7.3e-19 Score=137.23 Aligned_cols=71 Identities=18% Similarity=0.270 Sum_probs=68.7
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCcccccccCCCCeEEEEe
Q 023989 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVML 74 (274)
Q Consensus 1 M~I~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~~p~~~qkLI~~GK~L~D~~tL~d~~I~~~~~I~v~v 74 (274)
|+|+||++.|+++.|+|++++||.+||++|+++.| +++++|||||.||+|+|+.+|++|+|+++++|+|..
T Consensus 29 m~I~VKtl~Gk~i~lev~p~dTV~~lK~~Ia~k~G---ip~~qQrLi~~Gk~L~D~~TL~dygI~~gstlhL~~ 99 (100)
T 1uh6_A 29 IEVVCNDRLGKKVRVKCNTDDTIGDLKKLIAAQTG---TRWNKIVLKKWYTIFKDHVSLGDYEIHDGMNLELYY 99 (100)
T ss_dssp EEEEEECSSSSCEEEEEETTSBHHHHHHHHHHHHC---CCGGGCEEEETTEECCSSCBHHHHTCCTTEEEEEEC
T ss_pred EEEEEECCCCCEEEEEeCCCCcHHHHHHHHHHHhC---CCHHHEEEEECCEECCCCCCHHHcCCCCCCEEEEEe
Confidence 78999999999999999999999999999999999 999999999999999999999999999999999864
No 24
>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} SCOP: d.15.1.1
Probab=99.76 E-value=2.8e-18 Score=127.93 Aligned_cols=75 Identities=40% Similarity=0.566 Sum_probs=72.4
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCcccccccCCCCeEEEEeccCC
Q 023989 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVMLSKSK 78 (274)
Q Consensus 1 M~I~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~~p~~~qkLI~~GK~L~D~~tL~d~~I~~~~~I~v~v~k~k 78 (274)
|+|+||+++|+.+.|+|++++||.+||++|+++.+ +++++|||+|+||.|+|+++|.+|+|+++++|+|+++.+.
T Consensus 4 m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~---i~~~~qrL~~~g~~L~d~~tL~~~~i~~~~~l~l~~r~~G 78 (85)
T 3mtn_B 4 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLSDYNIQKWSTLFLLLRLRG 78 (85)
T ss_dssp EEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHC---CCGGGCEEEETTEECCTTSBTGGGTCCTTCEEEEECCCCC
T ss_pred EEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHC---cChHHEEEEECCEECCCCCCHHHcCCCCCCEEEEEEECcC
Confidence 79999999999999999999999999999999999 9999999999999999999999999999999999998654
No 25
>4eew_A Large proline-rich protein BAG6; ubiquitin-like fold, GP78-binding, chaperone; 1.30A {Homo sapiens}
Probab=99.76 E-value=2e-18 Score=130.45 Aligned_cols=71 Identities=25% Similarity=0.343 Sum_probs=68.6
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCcccccccCCCCeEEEEec
Q 023989 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVMLS 75 (274)
Q Consensus 1 M~I~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~~p~~~qkLI~~GK~L~D~~tL~d~~I~~~~~I~v~v~ 75 (274)
|+|+||+++|+.+.|+|++++||.+||++|+++.| +++++|||+|+||.|+|+.+|++|+| +|++||+++|
T Consensus 18 m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~g---ip~~~qrLi~~Gk~L~D~~tL~~~~i-~g~~i~lv~R 88 (88)
T 4eew_A 18 LEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVS---IPSEKQRLIYQGRVLQDDKKLQEYNV-GGKVIHLVER 88 (88)
T ss_dssp EEEEEEETTSCEEEEEEETTCBHHHHHHHHHHHHT---CCGGGEEEEETTEECCTTSBGGGGTC-TTEEEEEEEC
T ss_pred EEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHhC---CCHHHEEEEECCEECCCCCcHHHcCC-CCcEEEEEEC
Confidence 78999999999999999999999999999999999 99999999999999999999999999 8999999875
No 26
>1wia_A Hypothetical ubiquitin-like protein (riken cDNA 2010008E23); 'structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.76 E-value=2.7e-18 Score=131.87 Aligned_cols=74 Identities=22% Similarity=0.232 Sum_probs=68.8
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCC-CcccccccCCCCeEEEEeccCCC
Q 023989 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDE-TTLADNKVSEDGFLVVMLSKSKT 79 (274)
Q Consensus 1 M~I~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~~p~~~qkLI~~GK~L~D~-~tL~d~~I~~~~~I~v~v~k~k~ 79 (274)
|+|+||+++|+.+.|+|++++||.+||++|+++ . +++|||||+||.|+|+ ++|++|+|++|++|||++++++.
T Consensus 8 m~i~Vk~~~g~~~~~~v~~~~TV~~LK~~i~~~-----~-~~~qrLi~~Gk~L~D~~~tL~~y~i~~g~~i~l~~~~~~~ 81 (95)
T 1wia_A 8 INVRLKFLNDTEELAVARPEDTVGTLKSKYFPG-----Q-ESQMKLIYQGRLLQDPARTLSSLNITNNCVIHCHRSPPGA 81 (95)
T ss_dssp EEEEEEETTTEEEEEEECSSSBHHHHHHHHSSS-----T-TTTCEEEETTEECCCSSCBTTTTTCCTTEEEEEECCCCCC
T ss_pred EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHhh-----C-cCcEEEEECCEEccCCcCCHHHcCCCCCCEEEEEECCCCC
Confidence 789999999999999999999999999999886 3 7899999999999999 99999999999999999987664
Q ss_pred C
Q 023989 80 L 80 (274)
Q Consensus 80 ~ 80 (274)
+
T Consensus 82 ~ 82 (95)
T 1wia_A 82 A 82 (95)
T ss_dssp C
T ss_pred C
Confidence 4
No 27
>1wy8_A NP95-like ring finger protein, isoform A; ubiquitin-like domain, NP95/ICBP90-like ring finger (NIRF), ubiquitin ligase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.75 E-value=5.3e-18 Score=128.22 Aligned_cols=76 Identities=21% Similarity=0.272 Sum_probs=71.9
Q ss_pred CEEEEEeCCC-cEEEE-EeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCcccccccCCCCeEEEEeccCC
Q 023989 1 MKLTVKTLKG-SHFEI-RVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVMLSKSK 78 (274)
Q Consensus 1 M~I~VKtl~g-~~~~i-eV~~~~TV~~LK~kI~~~~g~~~~p~~~qkLI~~GK~L~D~~tL~d~~I~~~~~I~v~v~k~k 78 (274)
|+|+||+++| +.+.| +|++++||.+||++|++..| +++++|||+|+||.|+|+++|.+|+|+++++|+|+++.+.
T Consensus 8 m~i~Vk~~~g~~~~~l~~v~~~~tV~~lK~~i~~~~g---ip~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~~~~g 84 (89)
T 1wy8_A 8 MWIQVRTIDGSKTCTIEDVSRKATIEELRERVWALFD---VRPECQRLFYRGKQLENGYTLFDYDVGLNDIIQLLVRPDS 84 (89)
T ss_dssp EEEEEEETTCSCEEEEEEECTTCBHHHHHHHHHHHSC---CCTTTEEEEETTEECCSSSBHHHHTCCTTCEEEEEECCCC
T ss_pred EEEEEEECCCCceEEEEecCCCCCHHHHHHHHHHHHC---cChhhEEEEECCeECCCCCCHHHCCCCCCCEEEEEEeCCC
Confidence 7999999999 79999 59999999999999999999 9999999999999999999999999999999999998765
Q ss_pred C
Q 023989 79 T 79 (274)
Q Consensus 79 ~ 79 (274)
.
T Consensus 85 G 85 (89)
T 1wy8_A 85 G 85 (89)
T ss_dssp S
T ss_pred C
Confidence 3
No 28
>1sif_A Ubiquitin; hydrophobic mutants, folding, stability, structural protein; 2.18A {Homo sapiens} SCOP: d.15.1.1
Probab=99.75 E-value=4.1e-18 Score=129.35 Aligned_cols=75 Identities=37% Similarity=0.596 Sum_probs=69.9
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCcccccccCCCCeEEEEeccCC
Q 023989 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVMLSKSK 78 (274)
Q Consensus 1 M~I~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~~p~~~qkLI~~GK~L~D~~tL~d~~I~~~~~I~v~v~k~k 78 (274)
|+|+||+++|+.+.++|++++||.+||++|++..| +++++|||+|+||.|+|+++|++|+|+++++|+|+++.+.
T Consensus 10 ~~i~v~~~~G~~~~l~v~~~~TV~~LK~~I~~~~g---ip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~r~~G 84 (88)
T 1sif_A 10 LQLFIKTLTGKTFTVEMEPSDTIENLKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRG 84 (88)
T ss_dssp CEEEEEETTSCEEEEECCTTSBHHHHHHHHHHHHC---CCGGGCEEEETTEECCTTSBSGGGTCCTTCEEEEEC----
T ss_pred eEEEEEeCCCCEEEEEECCCChHHHHHHHHHHHHC---cChhhEEEEECCEECCCCCcHHHcCCCCCCEEEEEEeCCC
Confidence 89999999999999999999999999999999999 9999999999999999999999999999999999987653
No 29
>1wgd_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; ENDPLASMIC reticulum stress, UBL domain; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.75 E-value=3.5e-18 Score=130.84 Aligned_cols=76 Identities=24% Similarity=0.209 Sum_probs=70.6
Q ss_pred CEEEEEeCCCc--EEEEEeCCCCCHHHHHHHHHHHh--CCCCCCCCCeEEEeCCeecCCCCccccc--ccCCCCeEEEEe
Q 023989 1 MKLTVKTLKGS--HFEIRVQPSDTVMAVKKNIEDVQ--GKDNYPCGQQLLIHNGKVLKDETTLADN--KVSEDGFLVVML 74 (274)
Q Consensus 1 M~I~VKtl~g~--~~~ieV~~~~TV~~LK~kI~~~~--g~~~~p~~~qkLI~~GK~L~D~~tL~d~--~I~~~~~I~v~v 74 (274)
|+|+||+.+++ .+.|+|++++||.+||++|+++. + +++++|||||+||+|+|+++|++| +|+++++|||++
T Consensus 8 m~i~Vk~~~~~~~~~~v~v~~~~TV~~lK~~I~~~~~~~---i~~~~QrLi~~Gk~L~D~~tL~~~~~~i~~~~~i~lv~ 84 (93)
T 1wgd_A 8 VTLLVKSPNQRHRDLELSGDRGWSVGHLKAHLSRVYPER---PRPEDQRLIYSGKLLLDHQCLRDLLPKQEKRHVLHLVC 84 (93)
T ss_dssp CEEEEECSSSSCCCEEEECCTTSCHHHHHHHHHHHSTTC---CCTTTCEEEETTEECCSSSCHHHHSCSSSCSEEEEEEC
T ss_pred EEEEEEeCCCCeEEEEEecCCCCcHHHHHHHHHHHhcCC---CChHHeEEEECCEECcCcCCHHHHhcCCCCCCEEEEEe
Confidence 79999999988 67788889999999999999998 8 999999999999999999999999 999999999998
Q ss_pred ccCCC
Q 023989 75 SKSKT 79 (274)
Q Consensus 75 ~k~k~ 79 (274)
+.+..
T Consensus 85 ~~~gg 89 (93)
T 1wgd_A 85 NVKSG 89 (93)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 76654
No 30
>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.75 E-value=3.9e-18 Score=128.28 Aligned_cols=75 Identities=28% Similarity=0.446 Sum_probs=72.1
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCcccccccCCCCeEEEEeccCC
Q 023989 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVMLSKSK 78 (274)
Q Consensus 1 M~I~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~~p~~~qkLI~~GK~L~D~~tL~d~~I~~~~~I~v~v~k~k 78 (274)
|+|+||+++|+.+.++|++++||.+||++|+++.+ +++++|||+|+||.|+|+++|++|+|+++++|+|+++.+.
T Consensus 8 m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~g---i~~~~qrL~~~Gk~L~d~~tL~~~~i~~g~~i~l~~~~~G 82 (87)
T 1wh3_A 8 IQVFVKNPDGGSYAYAINPNSFILGLKQQIEDQQG---LPKKQQQLEFQGQVLQDWLGLGIYGIQDSDTLILSKKKGS 82 (87)
T ss_dssp EEEEEEETTTEEEEEEECSSSBHHHHHHHHHHHTC---CCTTTEEEEETTEECCSSSBHHHHTCCTTEEEEEEECSCC
T ss_pred EEEEEEcCCCCEEEEEeCCCChHHHHHHHHHHHhC---CChHHEEEEECCEEccCCCCHHHCCCCCCCEEEEEEeccC
Confidence 78999999999999999999999999999999999 9999999999999999999999999999999999998754
No 31
>2uyz_B Small ubiquitin-related modifier 1; sumoylation, cell division, nuclear protein, ubiquitin-like modifier, UBL conjugation pathway; 1.4A {Homo sapiens} SCOP: d.15.1.1 PDB: 2vrr_B 2iy0_B 2iy1_B 2g4d_B 2las_A 2io2_B 1z5s_B 3uip_B* 1tgz_B* 2bf8_B
Probab=99.75 E-value=2.3e-18 Score=127.45 Aligned_cols=74 Identities=19% Similarity=0.301 Sum_probs=71.5
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCcccccccCCCCeEEEEeccC
Q 023989 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVMLSKS 77 (274)
Q Consensus 1 M~I~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~~p~~~qkLI~~GK~L~D~~tL~d~~I~~~~~I~v~v~k~ 77 (274)
|+|+||+++|+.+.++|++++||.+||++|+++.| +++++|||+|+|+.|+|+++|++|+|+++++|+++++.+
T Consensus 4 m~i~vk~~~g~~~~~~v~~~~tv~~lk~~i~~~~g---i~~~~qrL~~~G~~L~d~~tl~~~~i~~~~~i~l~~~~~ 77 (79)
T 2uyz_B 4 IKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQG---VPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQEQT 77 (79)
T ss_dssp EEEEEECTTCCEEEEEEETTSCTHHHHHHHHHHHT---CCGGGEEEEETTEECCTTCCHHHHTCCTTEEEEEEECCC
T ss_pred EEEEEECCCCCEEEEEECCCChHHHHHHHHHHHHC---CCcccEEEEECCEEeCCCCCHHHcCCCCCCEEEEEEecc
Confidence 78999999999999999999999999999999999 999999999999999999999999999999999998764
No 32
>2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure, northeast structural genomics consortium, protein structure initiative, NESG; NMR {Homo sapiens}
Probab=99.75 E-value=2.3e-18 Score=130.63 Aligned_cols=75 Identities=20% Similarity=0.267 Sum_probs=70.4
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCcccccccCCCCeEEEEeccCC
Q 023989 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVMLSKSK 78 (274)
Q Consensus 1 M~I~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~~p~~~qkLI~~GK~L~D~~tL~d~~I~~~~~I~v~v~k~k 78 (274)
|+|+||+++|+.+.++|++++||.+||++|++..| +++++|||+|+||.|+|+++|++|+|++|++|+|+++.+.
T Consensus 5 m~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~g---ip~~~qrL~~~Gk~L~D~~tL~~~~I~~g~~i~l~~~~~g 79 (88)
T 2hj8_A 5 LSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEG---VQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLRLRG 79 (88)
T ss_dssp EEEEEEETTSCEEEEEEESSSBHHHHHHHHHHHTC---SCTTTEEEESSSSCCCTTSBHHHHHCSTTCEEEEEEC---
T ss_pred EEEEEECCCCCEEEEEECCCCcHHHHHHHHHHHhC---CChhHEEEEECCEECCCCCcHHHcCCCCCCEEEEEEEcCC
Confidence 78999999999999999999999999999999999 9999999999999999999999999999999999988654
No 33
>1v5o_A 1700011N24RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.74 E-value=6.3e-18 Score=131.89 Aligned_cols=76 Identities=17% Similarity=0.307 Sum_probs=69.9
Q ss_pred CEEEEEeCCC----cEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCC-CcccccccCCCCeEEEEec
Q 023989 1 MKLTVKTLKG----SHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDE-TTLADNKVSEDGFLVVMLS 75 (274)
Q Consensus 1 M~I~VKtl~g----~~~~ieV~~~~TV~~LK~kI~~~~g~~~~p~~~qkLI~~GK~L~D~-~tL~d~~I~~~~~I~v~v~ 75 (274)
|+|+||+..+ +.|.|+|++++||.+||++|+++.| +++++|||+|+||.|+|+ ++|.+|+|+++++|+|+.+
T Consensus 8 m~I~Vk~~~~~~~~~~~~i~v~~~~TV~~LK~~I~~~~g---ip~~~qrL~~~gk~L~D~~~tL~~ygI~~g~~l~l~~~ 84 (102)
T 1v5o_A 8 MLITVYCVRRDLTEVTFSLQVNPDFELSNFRVLCELESG---VPAEEAQIVYMEQLLTDDHCSLGSYGLKDGDMVVLLQK 84 (102)
T ss_dssp EEEEEEECCCCCCCCEEEEEECTTCBHHHHHHHHHHHTC---CCGGGBCEEETTEEECCSSSBHHHHTCCTTEEEEECBC
T ss_pred EEEEEEECCCCcCceEEEEEcCCCCCHHHHHHHHHHHHC---cChHHeEEEECCEECCCCcccHHHCCCCCCCEEEEEEC
Confidence 7899998754 7999999999999999999999999 999999999999999988 7999999999999999987
Q ss_pred cCCC
Q 023989 76 KSKT 79 (274)
Q Consensus 76 k~k~ 79 (274)
.+..
T Consensus 85 ~~gg 88 (102)
T 1v5o_A 85 DNVG 88 (102)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 6543
No 34
>1wju_A NEDD8 ultimate buster-1; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.74 E-value=4.2e-18 Score=132.92 Aligned_cols=72 Identities=17% Similarity=0.094 Sum_probs=65.7
Q ss_pred EEEEEeCC----CcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCcccccccCCCCeEEEEecc
Q 023989 2 KLTVKTLK----GSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVMLSK 76 (274)
Q Consensus 2 ~I~VKtl~----g~~~~ieV~~~~TV~~LK~kI~~~~g~~~~p~~~qkLI~~GK~L~D~~tL~d~~I~~~~~I~v~v~k 76 (274)
.|+|+..+ +++|.|+|++++||.+||++|+++.| +|+++|||||+||+|+|++||++|+|++|++|+||+.+
T Consensus 17 ti~V~~~~~~~~~~~~~lev~~~~TV~~lK~kI~~k~g---ip~~qQrLI~~GKiL~D~~TL~~y~I~~gsti~vl~lr 92 (100)
T 1wju_A 17 TIEVFLPPRLKKDRKNLLETRLHITGRELRSKIAETFG---LQENYIKIVINKKQLQLGKTLEEQGVAHNVKAMVLELK 92 (100)
T ss_dssp EEEEECCTTTCCSSSEEEEEESSSBHHHHHHHHHHHTT---CCSTTCEEEETTEECCTTSBHHHHTCCSSEEEEEECCC
T ss_pred EEEEEecCCCCCCcEEEEEeCCcCHHHHHHHHHHHHHC---cCHHHeEEEeCCeECCCCCcHHHcCCCCCCEEEEEEEC
Confidence 46777666 77899999999999999999999999 99999999999999999999999999999999666554
No 35
>2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S
Probab=99.74 E-value=8.1e-18 Score=123.32 Aligned_cols=71 Identities=28% Similarity=0.529 Sum_probs=68.2
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCcccccccCCCCeEEEEec
Q 023989 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVMLS 75 (274)
Q Consensus 1 M~I~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~~p~~~qkLI~~GK~L~D~~tL~d~~I~~~~~I~v~v~ 75 (274)
|+|+||+ .|+.+.++|++++||.+||++|++..| +++++|||+|+||.|+|+++|++|||++|++|+|+.+
T Consensus 5 m~i~vk~-~g~~~~~~v~~~~tV~~LK~~i~~~~~---i~~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~~ 75 (77)
T 2bwf_A 5 LNIHIKS-GQDKWEVNVAPESTVLQFKEAINKANG---IPVANQRLIYSGKILKDDQTVESYHIQDGHSVHLVKS 75 (77)
T ss_dssp EEEEEEE-TTEEEEEEECTTCBHHHHHHHHHHHHC---CCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEEC
T ss_pred EEEEEEE-CCEEEEEEECCCCcHHHHHHHHHHHhC---CCHHHEEEEECCeEcCCCCCHHHcCCCCCCEEEEEEc
Confidence 6899998 999999999999999999999999999 9999999999999999999999999999999999865
No 36
>1v2y_A 3300001G02RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.74 E-value=2.1e-18 Score=135.90 Aligned_cols=76 Identities=20% Similarity=0.242 Sum_probs=70.0
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCC---------------CCeEEEeCCeecC-CCCccccccc
Q 023989 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPC---------------GQQLLIHNGKVLK-DETTLADNKV 64 (274)
Q Consensus 1 M~I~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~~p~---------------~~qkLI~~GK~L~-D~~tL~d~~I 64 (274)
|+|+||+++|++|.|+|++++||.+||++|+++.+ +++ ++|+|||+||+|. |+++|++|||
T Consensus 8 M~I~Vk~l~g~~~~v~V~~~~TV~dLK~~I~~~~~---i~~~~q~g~~~isw~~~w~q~~Li~~Gk~L~dD~~tL~dygI 84 (105)
T 1v2y_A 8 MTVRVCKMDGEVMPVVVVQNATVLDLKKAIQRYVQ---LKQEREGGVQHISWSYVWRTYHLTSAGEKLTEDRKKLRDYGI 84 (105)
T ss_dssp EEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHH---HHHHHTTCCCCCCHHHHHTTEEEESSSCEECCSSSBHHHHTC
T ss_pred EEEEEEecCCCEEEEEECCCChHHHHHHHHHHHhC---CCcccccCcceeeeeecceeEEEEeCCcCccCCcCCHHHcCC
Confidence 89999999999999999999999999999999998 665 4679999999996 5699999999
Q ss_pred CCCCeEEEEeccCCC
Q 023989 65 SEDGFLVVMLSKSKT 79 (274)
Q Consensus 65 ~~~~~I~v~v~k~k~ 79 (274)
++|++||++.+.+..
T Consensus 85 ~~g~~l~lv~~lr~~ 99 (105)
T 1v2y_A 85 RNRDEVSFIKKLGQK 99 (105)
T ss_dssp CSSEEEEEEECSCSC
T ss_pred CCCCEEEEEehhccC
Confidence 999999999987654
No 37
>1ify_A HHR23A, UV excision repair protein RAD23 homolog A; ubiquitin associated domain, UBA domain, ubiquitin proteosome pathway, DNA binding protein; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=99.74 E-value=1.4e-18 Score=118.77 Aligned_cols=49 Identities=51% Similarity=0.954 Sum_probs=47.2
Q ss_pred ccCCCCchHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCHHHHHHHHHcCCCC
Q 023989 146 NLVAGNDLEQTIQQIMDMGGGTWDKETVTRALQAAYNNPERAVDYLYSGIPE 197 (274)
Q Consensus 146 ~l~~g~~~e~~i~~i~eMG~~~f~r~qv~~ALrAafnNpdrAvEyL~~GIP~ 197 (274)
+|++|+++++.|++|++|| |+|++|++|||+++||+|||||||++|||+
T Consensus 1 ~~~~~~~~~~~i~~L~~MG---F~~~~a~~AL~~~~~n~e~A~e~L~~gip~ 49 (49)
T 1ify_A 1 TLVTGSEYETMLTEIMSMG---YERERVVAALRASYNNPHRAVEYLLTGIPG 49 (49)
T ss_dssp CCCCSHHHHHHHHHHHHTT---CCHHHHHHHHHTTTSCSHHHHHHHHHCCCC
T ss_pred CCCCCccCHHHHHHHHHcC---CCHHHHHHHHHHhCCCHHHHHHHHHhCCCC
Confidence 4789999999999999999 999999999999999999999999999995
No 38
>2kan_A Uncharacterized protein AR3433A; ubiquitin fold, alpha+beta, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=99.74 E-value=7.9e-18 Score=129.68 Aligned_cols=75 Identities=27% Similarity=0.367 Sum_probs=71.1
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCC-CcccccccCCCCeEEEEeccCCC
Q 023989 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDE-TTLADNKVSEDGFLVVMLSKSKT 79 (274)
Q Consensus 1 M~I~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~~p~~~qkLI~~GK~L~D~-~tL~d~~I~~~~~I~v~v~k~k~ 79 (274)
|+|+||++++ ++.|+|++++||.+||++|+++.| +++++|||+|+||.|+|+ ++|++|+|+++++|+|+++.+..
T Consensus 16 ~~I~Vk~~~~-~~~l~v~~~~TV~~LK~~I~~~~g---ip~~~QrLi~~Gk~L~D~~~tL~~ygI~~gstl~lv~r~~gg 91 (94)
T 2kan_A 16 IHVTVKFPSK-QFTVEVDRTETVSSLKDKIHIVEN---TPIKRMQLYYSGIELADDYRNLNEYGITEFSEIVVFLKSINR 91 (94)
T ss_dssp EEEEEECSSC-EEEEEECTTCBHHHHHHHHHHHSS---SCTTTEEEEETTEEECCTTSBHHHHTCCTTEEEEEEECCCSS
T ss_pred EEEEEEcCCc-EEEEEECCCCcHHHHHHHHHHHHC---cCHHHEEEEECCEECCCCcccHHHCCCCCCCEEEEEEeCCCC
Confidence 6899999888 899999999999999999999999 999999999999999999 99999999999999999987653
No 39
>1wyw_B Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 1y8r_C* 2asq_A 2pe6_B 1a5r_A 2kqs_A 3kyc_D* 3rzw_C
Probab=99.74 E-value=5.6e-18 Score=131.03 Aligned_cols=74 Identities=19% Similarity=0.301 Sum_probs=71.7
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCcccccccCCCCeEEEEeccC
Q 023989 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVMLSKS 77 (274)
Q Consensus 1 M~I~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~~p~~~qkLI~~GK~L~D~~tL~d~~I~~~~~I~v~v~k~ 77 (274)
|+|+||+++|+.+.|+|.+++||.+||++|+++.| +++++|||||+|+.|+|+++|++|+|+++++|+|+++.+
T Consensus 22 m~I~Vk~~~g~~~~l~v~~~~tv~~lK~~i~~~~g---ip~~~qrLif~Gk~L~d~~tl~dy~i~~g~~I~l~~~~~ 95 (97)
T 1wyw_B 22 IKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQG---VPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQEQT 95 (97)
T ss_dssp EEEEEECTTCCEEEEEEETTSCTHHHHHHHHHHHT---CCGGGEEEEETTEECCTTCCHHHHTCCTTCEEEEEESSS
T ss_pred EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHC---CChhhEEEEECCeEcCCCCCHHHCCCCCCCEEEEEEecC
Confidence 78999999999999999999999999999999999 999999999999999999999999999999999999765
No 40
>2klc_A Ubiquilin-1; ubiquitin-like, structural genomics, PSI-2, protein structur initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=99.73 E-value=1.2e-17 Score=130.14 Aligned_cols=74 Identities=28% Similarity=0.358 Sum_probs=70.6
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCcccccccCCCCeEEEEeccCC
Q 023989 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVMLSKSK 78 (274)
Q Consensus 1 M~I~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~~p~~~qkLI~~GK~L~D~~tL~d~~I~~~~~I~v~v~k~k 78 (274)
|+|+||+. |+.+.|+|++++||.+||++|++..| +++++|||+|+||.|+|+++|++|||++|++|+|+++.+.
T Consensus 26 m~I~Vk~~-g~~~~l~v~~~~TV~~LK~~I~~~~g---ip~~~qrLi~~Gk~L~D~~tL~~~gI~~g~~I~l~~~~~~ 99 (101)
T 2klc_A 26 MKVTVKTP-KEKEEFAVPENSSVQQFKEEISKRFK---SHTDQLVLIFAGKILKDQDTLSQHGIHDGLTVHLVIKTQN 99 (101)
T ss_dssp EEEEEECS-SCEEEEEECSCCCHHHHHHHHHHHHT---CCGGGEEEEETTEEECTTCCTGGGTCCTTCEEEEEECCSS
T ss_pred EEEEEEeC-CcEEEEEECCCCCHHHHHHHHHHHHC---cChhhEEEEECCEECCCcCcHHHcCCCCCCEEEEEEcCCC
Confidence 78999998 88999999999999999999999999 9999999999999999999999999999999999987654
No 41
>1wx8_A Riken cDNA 4931431F19; ubiquitin-like domain, ubiquilin 1-like, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.73 E-value=5.2e-18 Score=130.39 Aligned_cols=75 Identities=21% Similarity=0.330 Sum_probs=71.2
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCcccccccCCCCeEEEEeccCCC
Q 023989 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVMLSKSKT 79 (274)
Q Consensus 1 M~I~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~~p~~~qkLI~~GK~L~D~~tL~d~~I~~~~~I~v~v~k~k~ 79 (274)
|+|+||+. |+.+.|+|++++||.+||++|++..+ +++++|||+|+||.|+|+++|.+|+|+++++|||+++.+..
T Consensus 18 m~i~Vk~~-g~~~~~~v~~~~TV~~LK~~I~~~~g---ip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~~~~~g 92 (96)
T 1wx8_A 18 IRVSVKTP-QDCHEFFLAENSNVRRFKKQISKYLH---CNADRLVLIFTGKILRDQDILSQRGILDGSTVHVVVRSHSG 92 (96)
T ss_dssp EEEEEECS-SSEEEEEEETTCCHHHHHHHHHHHTC---SCTTTBCCEETTEECCTTSCHHHHTCCTTEEEECCBCCSSC
T ss_pred EEEEEEEC-CeEEEEEECCCCCHHHHHHHHHHHhC---CCHHHEEEEECCEECCCcCCHHHCCCCCCCEEEEEEeCCCC
Confidence 78999998 89999999999999999999999999 99999999999999999999999999999999999887653
No 42
>1yx5_B Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo sapiens} SCOP: d.15.1.1 PDB: 1yx6_B
Probab=99.73 E-value=1.9e-17 Score=127.73 Aligned_cols=75 Identities=40% Similarity=0.586 Sum_probs=72.3
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCcccccccCCCCeEEEEeccCC
Q 023989 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVMLSKSK 78 (274)
Q Consensus 1 M~I~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~~p~~~qkLI~~GK~L~D~~tL~d~~I~~~~~I~v~v~k~k 78 (274)
|+|+||+.+|+.+.++|++++||.+||++|++..| +++++|||+|+||.|+|+++|++|+|++|++|+|+++.+.
T Consensus 1 M~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~g---i~~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~~~~g 75 (98)
T 1yx5_B 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRG 75 (98)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHTC---CCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECCCC
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHC---cChhhEEEEECCEECCCCCCHHHcCCCCCCEEEEEEeCCC
Confidence 89999999999999999999999999999999999 9999999999999999999999999999999999998654
No 43
>3vdz_A Ubiquitin-40S ribosomal protein S27A; gadolinium, MRI contrast agent, peptide-based contrast agent lanthanide binding TAG; 2.40A {Synthetic construct} PDB: 2ojr_A
Probab=99.73 E-value=1.4e-17 Score=132.05 Aligned_cols=74 Identities=41% Similarity=0.599 Sum_probs=71.8
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCcccccccCCCCeEEEEeccC
Q 023989 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVMLSKS 77 (274)
Q Consensus 1 M~I~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~~p~~~qkLI~~GK~L~D~~tL~d~~I~~~~~I~v~v~k~ 77 (274)
|+|+||+++|+.|.|+|++++||.+||.+|+++.| +|+++|||+|+||.|+|+++|.+|+|+++++|+|+++.+
T Consensus 36 m~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~g---ip~~~QrLi~~Gk~L~D~~tL~~~gI~~gs~I~l~~rl~ 109 (111)
T 3vdz_A 36 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 109 (111)
T ss_dssp EEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHC---CCGGGEEEEETTEECCTTSBTTTTTCCTTCEEEEEECCC
T ss_pred EEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhC---CChHHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEecC
Confidence 78999999999999999999999999999999999 999999999999999999999999999999999999865
No 44
>1yqb_A Ubiquilin 3; structural genomics consortium, ubiquitin, ubiquitin-like domain, structural genomics, signaling protein SGC; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=99.72 E-value=1.2e-17 Score=130.11 Aligned_cols=75 Identities=28% Similarity=0.334 Sum_probs=70.7
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCcccccccCCCCeEEEEeccCCC
Q 023989 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVMLSKSKT 79 (274)
Q Consensus 1 M~I~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~~p~~~qkLI~~GK~L~D~~tL~d~~I~~~~~I~v~v~k~k~ 79 (274)
|+|+||+.+|+ +.|+|++++||.+||++|++..| +++++|||+|+||.|+|+++|++|+|+++++|+|+++.+..
T Consensus 23 m~I~Vk~~~g~-~~l~v~~~~TV~~LK~~I~~~~g---ip~~~QrLi~~Gk~L~D~~tL~~ygI~~gstI~l~~r~~~~ 97 (100)
T 1yqb_A 23 IKVTVKTPKDK-EDFSVTDTCTIQQLKEEISQRFK---AHPDQLVLIFAGKILKDPDSLAQCGVRDGLTVHLVIKRQHR 97 (100)
T ss_dssp EEEEEECSSCE-EEEEEETTCBHHHHHHHHHHHHT---CCGGGEEEEETTEECCTTSBHHHHTCCTTCEEEEEECCCCS
T ss_pred EEEEEEcCCCc-EEEEECCCCcHHHHHHHHHHHHC---cChhhEEEEECCEECCCcCcHHHCCCCCCCEEEEEEcCCCC
Confidence 78999999885 79999999999999999999999 99999999999999999999999999999999999987653
No 45
>1wgh_A Ubiquitin-like 3, HCG-1 protein; ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.72 E-value=2e-17 Score=132.47 Aligned_cols=76 Identities=20% Similarity=0.239 Sum_probs=64.8
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCC---CC--CCCCeEEEeCCeecCCCCcccccccCCCCe--EEEE
Q 023989 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKD---NY--PCGQQLLIHNGKVLKDETTLADNKVSEDGF--LVVM 73 (274)
Q Consensus 1 M~I~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~---~~--p~~~qkLI~~GK~L~D~~tL~d~~I~~~~~--I~v~ 73 (274)
|+|+||+++|+++.|+|++++||.+||++|++..+++ .+ ++++|||||.||+|+|+++|++|+|+.+++ |||+
T Consensus 17 m~I~vKtl~G~t~~lev~~s~TV~~lK~kI~~~~p~dwke~~p~p~~qqrLIy~GK~LeD~~TL~~y~I~~~~~~tlhLv 96 (116)
T 1wgh_A 17 INLRLILVSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLHGNVTLGALKLPFGKTTVMHLV 96 (116)
T ss_dssp EEEEEECSSSCEEEEEECTTCBHHHHHHHHHHSSSCCSSCCCCCCTTTEEEEETTEEECSSCBTTTTTCCSSCEEEEEEE
T ss_pred EEEEEEeCCCCEEEEEECCcCHHHHHHHHHHHhcccccccCCCCChHHEEEEECCcCCCCCCcHHHcCCCCCCceEEEEE
Confidence 7899999999999999999999999999999943221 13 699999999999999999999999988865 5555
Q ss_pred ecc
Q 023989 74 LSK 76 (274)
Q Consensus 74 v~k 76 (274)
++.
T Consensus 97 lr~ 99 (116)
T 1wgh_A 97 ARE 99 (116)
T ss_dssp ECS
T ss_pred ccC
Confidence 543
No 46
>1j8c_A Ubiquitin-like protein hplic-2; ubiquitin-like domain, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.72 E-value=1.7e-17 Score=134.42 Aligned_cols=75 Identities=27% Similarity=0.344 Sum_probs=69.1
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCcccccccCCCCeEEEEeccCCC
Q 023989 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVMLSKSKT 79 (274)
Q Consensus 1 M~I~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~~p~~~qkLI~~GK~L~D~~tL~d~~I~~~~~I~v~v~k~k~ 79 (274)
|+|+||++ |+.+.|+|++++||.+||++|+++.| +++++|||||+||+|+|+++|.+|+|++|++|+|+++.+..
T Consensus 33 m~I~Vk~~-g~~~~l~v~~~~TV~~LK~~I~~~~g---ip~~~QrLi~~Gk~L~D~~tL~dygI~~gstI~lv~~~~gg 107 (125)
T 1j8c_A 33 IKVTVKTP-KEKEEFAVPENSSVQQFKEAISKRFK---SQTDQLVLIFAGKILKDQDTLIQHGIHDGLTVHLVIKRDPN 107 (125)
T ss_dssp EEEEEECS-SCEEEEEECTTCCHHHHHHHHHHHHC---SCSSSEEEEETTEEESTTSCGGGTTCSSSEEEEEEEC----
T ss_pred EEEEEEeC-CeEEEEEECCCCcHHHHHHHHHHHHC---cCcceEEEEECCEEcCCCCCHHHcCCCCCCEEEEEeccCCC
Confidence 78999998 89999999999999999999999999 99999999999999999999999999999999999987653
No 47
>3b1l_X E3 ubiquitin-protein ligase parkin; proteasome, ALFA-beta-protein; 1.85A {Mus musculus} PDB: 1mg8_A 2zeq_A 2knb_A 1iyf_A
Probab=99.56 E-value=4.3e-19 Score=130.16 Aligned_cols=74 Identities=19% Similarity=0.337 Sum_probs=71.5
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCcccccccCCCCeEEEEeccC
Q 023989 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVMLSKS 77 (274)
Q Consensus 1 M~I~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~~p~~~qkLI~~GK~L~D~~tL~d~~I~~~~~I~v~v~k~ 77 (274)
|+|+||+.+|+.+.++|++++||.+||++|++..| +++++|+|+|+||.|+|+++|++|+|++|++|+++++.+
T Consensus 1 M~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~g---i~~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~rlr 74 (76)
T 3b1l_X 1 MIVFVRFNSSYGFPVEVDSDTSILQLKEVVAKQQG---VPADQLRVIFAGKELPNHLTVQNCDLEQQSIVHIVQRPR 74 (76)
Confidence 89999999999999999999999999999999999 999999999999999999999999999999999998765
No 48
>1wgg_A Ubiquitin carboxyl-terminal hydrolase 14; ubiquitin specific protease 14, USP14, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.72 E-value=1.8e-17 Score=128.15 Aligned_cols=72 Identities=21% Similarity=0.306 Sum_probs=67.5
Q ss_pred CEEEEEeCCCcEE-EEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCcccccccCCCCeEEEEeccC
Q 023989 1 MKLTVKTLKGSHF-EIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVMLSKS 77 (274)
Q Consensus 1 M~I~VKtl~g~~~-~ieV~~~~TV~~LK~kI~~~~g~~~~p~~~qkLI~~GK~L~D~~tL~d~~I~~~~~I~v~v~k~ 77 (274)
|+|+|| +.|+.| .|+|++++||.+||++|++.+| +++++|||+|+||.|+|+ +|++|+|+++++|+||.+..
T Consensus 8 m~i~Vk-~~g~~~~~l~v~~~~TV~~lK~~I~~~tg---ip~~~QkLi~~Gk~L~D~-tL~~~~I~~g~~i~l~~~~~ 80 (96)
T 1wgg_A 8 YSVTVK-WGKEKFEGVELNTDEPPMVFKAQLFALTG---VQPARQKVMVKGGTLKDD-DWGNIKMKNGMTVLMMGSAD 80 (96)
T ss_dssp EEEEEE-ETTEEEEEEEEESSSCHHHHHHHHHHHTC---CCTTTSCCEETTEECCSS-CCCSCCCCSSCEEECCCCCC
T ss_pred EEEEEE-ECCEEEEEEEECCCCcHHHHHHHHHHHHC---cCHHHeEEEECCcCCCCC-CHHHCCCCCCCEEEEEecch
Confidence 689999 578999 6999999999999999999999 999999999999999999 99999999999999997654
No 49
>2l7r_A Ubiquitin-like protein FUBI; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=99.71 E-value=2.6e-17 Score=126.30 Aligned_cols=72 Identities=25% Similarity=0.295 Sum_probs=69.1
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCcccccccCCCCeEEEEeccC
Q 023989 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVMLSKS 77 (274)
Q Consensus 1 M~I~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~~p~~~qkLI~~GK~L~D~~tL~d~~I~~~~~I~v~v~k~ 77 (274)
|+|+||+ |+.+.|+|++++||.+||++|+++.| +++++|||+|+||.|+|+++|++|+|+++++|+|+++.+
T Consensus 20 m~I~Vk~--g~~~~l~v~~~~TV~~LK~~I~~~~g---ip~~~qrLi~~Gk~L~D~~tL~~y~I~~gstI~lv~rl~ 91 (93)
T 2l7r_A 20 MQLFVRA--QELHTFEVTGQETVAQIKAHVASLEG---IAPEDQVVLLAGAPLEDEATLGQCGVEALTTLEVAGRML 91 (93)
T ss_dssp CEEEEES--SSEEEEECCSSCBHHHHHHHHHHHHT---CCGGGCEEEETTEECCTTSBHHHHTCCSSCEEEEECCCC
T ss_pred EEEEEEC--CCEEEEEeCCCCcHHHHHHHHHHHhC---cChhHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEecC
Confidence 7999997 89999999999999999999999999 999999999999999999999999999999999998764
No 50
>1x1m_A Ubiquitin-like protein SB132; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.71 E-value=3.5e-17 Score=128.80 Aligned_cols=75 Identities=20% Similarity=0.165 Sum_probs=69.1
Q ss_pred CEEEEEeCCC---cEEEEEeCC---------CCCHHHHHHHHHHHh--CCCCCCCCC-eEEEeCCeecCCCCcccccccC
Q 023989 1 MKLTVKTLKG---SHFEIRVQP---------SDTVMAVKKNIEDVQ--GKDNYPCGQ-QLLIHNGKVLKDETTLADNKVS 65 (274)
Q Consensus 1 M~I~VKtl~g---~~~~ieV~~---------~~TV~~LK~kI~~~~--g~~~~p~~~-qkLI~~GK~L~D~~tL~d~~I~ 65 (274)
|+|+||+.++ +.|.|+|+. ++||.+||++|+++. | +++++ |||||+||.|+|+++|++|+|+
T Consensus 13 ~~i~Vk~~~~~~~~~~~l~v~~~~~~~v~~~~~TV~~LK~~i~~~~~~g---ip~~~~qrLi~~Gk~L~D~~tL~~y~i~ 89 (107)
T 1x1m_A 13 WHLAVKLADQPLAPKSILQLPETELGEYSLGGYSISFLKQLIAGKLQES---VPDPELIDLIYCGRKLKDDQTLDFYGIQ 89 (107)
T ss_dssp CCEEEEETTCTTSCCEEECCCCCSSCSSCCCCCBHHHHHHHHHHHCTTT---CCCSSSEEEEETTEECCTTCBHHHHTCC
T ss_pred eEEEEEeCCCCCccEEEEEecCccccccCcccCCHHHHHHHHHHHhccC---CChhhcEEEEECCeECCCCCcHHHcCCC
Confidence 7899999999 899999554 499999999999999 8 99999 9999999999999999999999
Q ss_pred CCCeEEEEeccCC
Q 023989 66 EDGFLVVMLSKSK 78 (274)
Q Consensus 66 ~~~~I~v~v~k~k 78 (274)
++++|||+++.+.
T Consensus 90 ~g~~i~lv~~~~~ 102 (107)
T 1x1m_A 90 PGSTVHVLRKSWS 102 (107)
T ss_dssp TTCEEEEEESSCC
T ss_pred CCCEEEEEeCCCC
Confidence 9999999987654
No 51
>3l0w_B Monoubiquitinated proliferating cell nuclear antigen, proliferating cell nuclear antigen; replication, DNA damage, DNA repair; 2.80A {Saccharomyces cerevisiae} PDB: 3l10_B
Probab=99.70 E-value=7e-17 Score=137.11 Aligned_cols=75 Identities=39% Similarity=0.552 Sum_probs=73.0
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCcccccccCCCCeEEEEeccCC
Q 023989 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVMLSKSK 78 (274)
Q Consensus 1 M~I~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~~p~~~qkLI~~GK~L~D~~tL~d~~I~~~~~I~v~v~k~k 78 (274)
|+|+||+++|+.+.|+|++++||.+||++|+++.| +++++|||+|+||.|+|+++|++|+|++|++||++++.+.
T Consensus 1 MqI~Vk~~~Gk~~~l~v~~~~TV~~LK~~I~~~~g---ip~~~QrLi~~Gk~L~D~~tL~~y~I~~gstI~Lvlrl~G 75 (169)
T 3l0w_B 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEG---IPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRG 75 (169)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHC---CCTTTEEEEETTEECCTTSBGGGGTCCTTCEEEEEECCCC
T ss_pred CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHHC---cCHHHEEEEECCccccCcCcHHHcCCCCCCEEEEEEEecc
Confidence 89999999999999999999999999999999999 9999999999999999999999999999999999998765
No 52
>2gow_A HCG-1 protein, ubiquitin-like protein 3; BC059385, structural genomics, protein structure initiative, PSI; NMR {Homo sapiens}
Probab=99.69 E-value=3.7e-17 Score=132.55 Aligned_cols=73 Identities=19% Similarity=0.235 Sum_probs=64.6
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHH------HhCCCCC--CCCCeEEEeCCeecCCCCcccccccCCCCeE--
Q 023989 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIED------VQGKDNY--PCGQQLLIHNGKVLKDETTLADNKVSEDGFL-- 70 (274)
Q Consensus 1 M~I~VKtl~g~~~~ieV~~~~TV~~LK~kI~~------~~g~~~~--p~~~qkLI~~GK~L~D~~tL~d~~I~~~~~I-- 70 (274)
|+|+||+++|+++.|+|++++||.+||++|++ +.| + ++++|||||+||+|+|+++|++|+|++++++
T Consensus 18 m~I~vktl~G~~~~lev~~s~TV~~lK~~I~~~~p~dwke~---ip~~~~~qrLIy~GK~LeD~~TL~~y~I~~~~~~tl 94 (125)
T 2gow_A 18 INLRLILVSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEE---QVSSPNILRLIYQGRFLHGNVTLGALKLPFGKTTVM 94 (125)
T ss_dssp EEEEEECTTSCEEEEEECTTSBHHHHHHHHHSSCCCSCCCC---TTCCGGGEEEESSSSEEESSCBTGGGCCCTTSEEEE
T ss_pred EEEEEEeCCCCEEEEEeCCccHHHHHHHHHHHHCCcccccC---CCCChHHEEEEECCcCCCCCCcHHHcCCCCCCceEE
Confidence 68999999999999999999999999999999 445 5 4899999999999999999999999988854
Q ss_pred EEEecc
Q 023989 71 VVMLSK 76 (274)
Q Consensus 71 ~v~v~k 76 (274)
+|+++.
T Consensus 95 hlv~r~ 100 (125)
T 2gow_A 95 HLVARE 100 (125)
T ss_dssp EEEECS
T ss_pred EEEecC
Confidence 555544
No 53
>2ojr_A Ubiquitin; lanthide-binding TAG, terbium, TB, SAD phasing, protein binding; 2.60A {Homo sapiens}
Probab=99.69 E-value=1.1e-16 Score=126.65 Aligned_cols=74 Identities=41% Similarity=0.599 Sum_probs=71.4
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCcccccccCCCCeEEEEeccC
Q 023989 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVMLSKS 77 (274)
Q Consensus 1 M~I~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~~p~~~qkLI~~GK~L~D~~tL~d~~I~~~~~I~v~v~k~ 77 (274)
|+|+||+++|+.+.++|++++||.+||++|+++.| +++++|||+|+||.|+|+++|++|+|+++++|+|+++.+
T Consensus 36 m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~g---ip~~~qrLi~~Gk~L~D~~tL~~~gI~~gs~I~l~~rl~ 109 (111)
T 2ojr_A 36 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 109 (111)
T ss_dssp EEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHC---CCTTTEEEEETTEECCSSCBTTTTTCCTTCEEEEEECCC
T ss_pred EEEEEEcCCCCEEEEEeCCCCCHHHHHHHHHHHHC---cCcccEEEEECCEECCCCCcHHHcCCCCCCEEEEEEeCC
Confidence 78999999999999999999999999999999999 999999999999999999999999999999999998764
No 54
>3m63_B Ubiquitin domain-containing protein DSK2; armadillo-like repeats, UBL conjugation pathway, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=99.69 E-value=1.7e-17 Score=129.50 Aligned_cols=72 Identities=28% Similarity=0.529 Sum_probs=68.3
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCcccccccCCCCeEEEEecc
Q 023989 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVMLSK 76 (274)
Q Consensus 1 M~I~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~~p~~~qkLI~~GK~L~D~~tL~d~~I~~~~~I~v~v~k 76 (274)
|+|+||+ .|+.|.|+|++++||.+||++|+++.| +++++|||+|+||.|+|+++|++|||++|++|+|+++.
T Consensus 29 i~I~Vk~-~g~~~~l~v~~~~TV~~LK~~I~~~~g---ip~~~QrLi~~Gk~L~D~~tL~~~gI~~g~tI~lv~~~ 100 (101)
T 3m63_B 29 LNIHIKS-GQDKWEVNVAPESTVLQFKEAINKANG---IPVANQRLIYSGKILKDDQTVESYHIQDGHSVHLVKSQ 100 (101)
T ss_dssp CCEEEEC-SSCCCCBCCCTTSBHHHHHHHHHHHHS---CCSTTCCEEETTEECCTTSBTTTTTCCTTEEEEECCCC
T ss_pred EEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHHHHC---cChHHEEEEECCEECCCcCcHHHCCCCCCCEEEEEeCC
Confidence 5688997 889999999999999999999999999 99999999999999999999999999999999999864
No 55
>1wxv_A BAG-family molecular chaperone regulator-1; structural genomics, apoptosis, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.69 E-value=1.1e-16 Score=122.15 Aligned_cols=74 Identities=26% Similarity=0.391 Sum_probs=67.8
Q ss_pred CEEEEEeCCCcEEEEEeCCC-----CCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCC-CCcccccccCCCCeEEEEe
Q 023989 1 MKLTVKTLKGSHFEIRVQPS-----DTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKD-ETTLADNKVSEDGFLVVML 74 (274)
Q Consensus 1 M~I~VKtl~g~~~~ieV~~~-----~TV~~LK~kI~~~~g~~~~p~~~qkLI~~GK~L~D-~~tL~d~~I~~~~~I~v~v 74 (274)
|+|+||+ .|+.+.|+|+++ +||.+||++|++..| +++++|||+|+||.|+| +++|++|+|+++++|+|+.
T Consensus 8 ~~v~Vk~-~~~~~~i~v~~~~~~~~~TV~~LK~~i~~~~g---ip~~~qrL~~~Gk~L~D~~~~L~~~~i~~g~~i~l~~ 83 (92)
T 1wxv_A 8 LTVTVTH-SNEKHDLHVTSQQGSSEPVVQDLAQVVEEVIG---VPQSFQKLIFKGKSLKEMETPLSALGIQDGCRVMLIG 83 (92)
T ss_dssp EEEEEEC-SSSEEEEEECCCSSSSSCBHHHHHHHHHHHTC---CCTTTCEEEETTEEECCSSSBHHHHTCCSSEEEEEES
T ss_pred EEEEEEE-CCEEEEEEECCCcCcccCcHHHHHHHHHHHHC---cCHHHEEEEECCeecCCCcccHHHCCCCCCCEEEEEe
Confidence 6899997 588999999995 999999999999999 99999999999999998 6689999999999999998
Q ss_pred ccCC
Q 023989 75 SKSK 78 (274)
Q Consensus 75 ~k~k 78 (274)
++..
T Consensus 84 ~~~~ 87 (92)
T 1wxv_A 84 KKNS 87 (92)
T ss_dssp CCSC
T ss_pred cCCC
Confidence 6544
No 56
>2kdb_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; UBL domain, membrane, polymorphism, transmembrane; NMR {Homo sapiens}
Probab=99.69 E-value=3.6e-17 Score=127.50 Aligned_cols=71 Identities=24% Similarity=0.242 Sum_probs=64.3
Q ss_pred CEEEEEeCCCc--EEEEEeCCCCCHHHHHHHHHHHh-CCCCCCCCCeEEEeCCeecCCCCccccc--ccCCCCeEEEE
Q 023989 1 MKLTVKTLKGS--HFEIRVQPSDTVMAVKKNIEDVQ-GKDNYPCGQQLLIHNGKVLKDETTLADN--KVSEDGFLVVM 73 (274)
Q Consensus 1 M~I~VKtl~g~--~~~ieV~~~~TV~~LK~kI~~~~-g~~~~p~~~qkLI~~GK~L~D~~tL~d~--~I~~~~~I~v~ 73 (274)
|+|+||+++|+ .+.|+|++++||.+||++|+++. |. .++++|||||+||+|+|+++|++| +|+++++|+|+
T Consensus 24 m~I~VK~~~g~~~~i~l~v~~~~TV~~LK~~I~~~~~g~--pp~~~QrLIy~Gk~L~D~~tL~~y~~~I~~~~tihLv 99 (99)
T 2kdb_A 24 VTLIIKAPNQKYSDQTISCFLNWTVGKLKTHLSNVYPSK--PLTKDQRLVYSGRLLPDHLQLKDILRKQDEYHMVHLV 99 (99)
T ss_dssp EEEEEECTTSSSCCEEEEECTTSBHHHHHHHHHHHSTTC--CCTTTCCEEETTEEECTTSBTHHHHTTTCSEEEEEEC
T ss_pred EEEEEEcCCCCEEEEEEEcCCCCHHHHHHHHHHHHhcCC--CChhhEEEEECCEECCCCCCHHHHhcCCCCCCEEEeC
Confidence 78999999998 67899999999999999999974 41 456999999999999999999999 99999999975
No 57
>1v5t_A 8430435I17RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 2kx3_A
Probab=99.68 E-value=8.8e-17 Score=122.62 Aligned_cols=73 Identities=21% Similarity=0.367 Sum_probs=68.8
Q ss_pred CEEEEEeCCCcEEEE-EeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEE---eCCeecCCCCcccccccCCCCeEEEEecc
Q 023989 1 MKLTVKTLKGSHFEI-RVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLI---HNGKVLKDETTLADNKVSEDGFLVVMLSK 76 (274)
Q Consensus 1 M~I~VKtl~g~~~~i-eV~~~~TV~~LK~kI~~~~g~~~~p~~~qkLI---~~GK~L~D~~tL~d~~I~~~~~I~v~v~k 76 (274)
|+|+||. .|+.|.| +|++++||.+||++|++++| +++++|||+ |+||.|+|+.+|++|+|+++++|+||.+.
T Consensus 8 m~i~Vk~-~g~~~~i~~v~~~~TV~~lK~~I~~~~g---ip~~~QkLi~~k~~Gk~L~D~~~L~~~~i~~g~~l~l~~~~ 83 (90)
T 1v5t_A 8 LPIIVKW-GGQEYSVTTLSEDDTVLDLKQFLKTLTG---VLPERQKLLGLKVKGKPAENDVKLGALKLKPNTKIMMMGTR 83 (90)
T ss_dssp CCEEEEE-TTEEEEECSCCSSSBHHHHHHHHHHHTC---CCTTTCEEESCEETTEECCTTSBHHHHTCCTTEEEEEECCC
T ss_pred EEEEEEE-CCEEEEEEEeCCCCCHHHHHHHHHHHHC---cCHHHeEEEeeccCCcCcCCCCCHHHcCCCCCCEEEEEecC
Confidence 7899995 8899999 99999999999999999999 999999999 99999999999999999999999999764
Q ss_pred C
Q 023989 77 S 77 (274)
Q Consensus 77 ~ 77 (274)
.
T Consensus 84 ~ 84 (90)
T 1v5t_A 84 E 84 (90)
T ss_dssp S
T ss_pred c
Confidence 3
No 58
>2kdi_A Ubiquitin, vacuolar protein sorting-associated protein 27 fusion protein; ubiquitin interacting motif, UIM, protein domain interface; NMR {Saccharomyces cerevisiae}
Probab=99.68 E-value=2.3e-16 Score=125.68 Aligned_cols=76 Identities=36% Similarity=0.507 Sum_probs=72.4
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCcccccccCCCCeEEEEeccCCC
Q 023989 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVMLSKSKT 79 (274)
Q Consensus 1 M~I~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~~p~~~qkLI~~GK~L~D~~tL~d~~I~~~~~I~v~v~k~k~ 79 (274)
++|+||+++|+.+.|+|++++||.+||++|++..| +++++|||+|+||.|+|+++|++|+|+++++|+|+++.+..
T Consensus 10 ~~i~vk~l~G~~~~l~v~~~~TV~~LK~~I~~~~g---ip~~~qrLi~~Gk~L~D~~tL~~ygI~~gstI~l~~~~~GG 85 (114)
T 2kdi_A 10 FQIFAKTLTGKTITLEVESSDTIDNVKSKIQDKEG---IPPDQQRLIWAGKQLEDGRTLSDYNIQRESTLHLVLRLRGG 85 (114)
T ss_dssp CEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHC---CCGGGEEEEETTEECCTTCBTTTTTCCSSCEEEEEECCCSS
T ss_pred EEEEEEeCCCcEEEEEECCCCcHHHHHHHHHHHHC---cChHHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEEcCCC
Confidence 47999999999999999999999999999999999 99999999999999999999999999999999999987643
No 59
>1se9_A Ubiquitin family; ubiquitin-like, cell-free, wheat GERM, structural genomics, protein structure initiative, CESG; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=99.68 E-value=1.2e-16 Score=129.56 Aligned_cols=78 Identities=23% Similarity=0.314 Sum_probs=66.3
Q ss_pred CEEEEEeCCCcEE-EEEeCCCCCHHHHHHHHHHHhC--CCCCCC--CCeEEEeCCeecCCCCcccccccCCCC------e
Q 023989 1 MKLTVKTLKGSHF-EIRVQPSDTVMAVKKNIEDVQG--KDNYPC--GQQLLIHNGKVLKDETTLADNKVSEDG------F 69 (274)
Q Consensus 1 M~I~VKtl~g~~~-~ieV~~~~TV~~LK~kI~~~~g--~~~~p~--~~qkLI~~GK~L~D~~tL~d~~I~~~~------~ 69 (274)
|+|+||+++|+.+ .+++++++||.+||++|+...+ ++.+|+ ++|||||+||+|+|++||++|+|++++ +
T Consensus 17 ~~i~~kt~~G~~i~~l~v~psdTV~~lK~kI~~~~p~dkegiP~~~~qQrLIy~GK~LeD~~TLsdy~I~~~~~~~~v~t 96 (126)
T 1se9_A 17 LEIKFRLTDGSDIGPKAFPDATTVSALKETVISEWPREKENGPKTVKEVKLISAGKVLENSKTVKDYRSPVSNLAGAVTT 96 (126)
T ss_dssp EEEEEEETTSCEEEEEEECTTCBHHHHHHHHHHHSCTTCSSSCCSGGGEEEEETTEECCTTSBGGGGSCCTTSCTTCCEE
T ss_pred EEEEEEECCCCEEEeeecCccCHHHHHHHHHHhhcccccccCCCChhhEEEEECCeECcCCCcHHHcCCCcCCccCCcEE
Confidence 6899999999988 6999999999999999976532 112775 899999999999999999999999994 5
Q ss_pred EEEEeccCC
Q 023989 70 LVVMLSKSK 78 (274)
Q Consensus 70 I~v~v~k~k 78 (274)
|||+++.+.
T Consensus 97 mhlVlrl~g 105 (126)
T 1se9_A 97 MHVIIQAPV 105 (126)
T ss_dssp EEEEECCCS
T ss_pred EEEEeccCC
Confidence 777776654
No 60
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=99.68 E-value=1.5e-16 Score=132.54 Aligned_cols=75 Identities=20% Similarity=0.267 Sum_probs=71.9
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCcccccccCCCCeEEEEeccCC
Q 023989 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVMLSKSK 78 (274)
Q Consensus 1 M~I~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~~p~~~qkLI~~GK~L~D~~tL~d~~I~~~~~I~v~v~k~k 78 (274)
|+|+||+++|+++.++|++++||.+||++|+++.| +|+++|||+|+|+.|+|+.+|.+|+|++|++|+++++.+.
T Consensus 82 m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~g---ip~~~q~L~~~G~~L~d~~tL~~y~i~~g~~l~l~~rl~G 156 (159)
T 3rt3_B 82 LSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEG---VQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLRLRG 156 (159)
T ss_dssp EEEEEECTTSCEEEEEECTTSBHHHHHHHHHHHHT---CCGGGEEEEETTEECCTTSBGGGGTCCTTCEEEEEECCC-
T ss_pred EEEEEECCCCCEEEEEeCCCCCHHHHHHHHHHHHC---CCHHHEEEEECCeecCCCCCHHHcCCCCCCEEEEEEecCC
Confidence 78999999999999999999999999999999999 9999999999999999999999999999999999998764
No 61
>2fnj_B Transcription elongation factor B polypeptide 2; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.15.1.1 PDB: 1lm8_B 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A
Probab=99.67 E-value=8.3e-17 Score=129.06 Aligned_cols=72 Identities=18% Similarity=0.243 Sum_probs=67.5
Q ss_pred CEEEEEeCCCc-EEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCcccccccC-------CCCeEEE
Q 023989 1 MKLTVKTLKGS-HFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVS-------EDGFLVV 72 (274)
Q Consensus 1 M~I~VKtl~g~-~~~ieV~~~~TV~~LK~kI~~~~g~~~~p~~~qkLI~~GK~L~D~~tL~d~~I~-------~~~~I~v 72 (274)
|.|+|+...++ ++.|+|++++||.+||++|+.+.| +|+++|||||+||.|+|+++|++|||+ ++++|++
T Consensus 1 M~mfl~ir~~ktti~lev~~sdTV~~lK~kI~~~eg---IP~~qQrLi~~Gk~LeD~~TLsdy~I~~~~a~~q~~stL~L 77 (118)
T 2fnj_B 1 MDVFLMIRRHKTTIFTDAKESSTVFELKRIVEGILK---RPPEEQRLYKDDQLLDDGKTLGECGFTSQTARPQAPATVGL 77 (118)
T ss_dssp CEEEEEEEEBTEEEEEEEETTSBHHHHHHHHHHHHC---CCGGGEEEEETTEECCTTSBHHHHTCCTTTSBTTBCEEEEE
T ss_pred CcEEEEEecCCEEEEEEeCCcChHHHHHHHHHHHhC---CCHHHeEEEECCeECCCCCCHHHcCcccccccCCCCCEEEE
Confidence 77888877776 589999999999999999999999 999999999999999999999999999 6999999
Q ss_pred Eec
Q 023989 73 MLS 75 (274)
Q Consensus 73 ~v~ 75 (274)
+++
T Consensus 78 ~lr 80 (118)
T 2fnj_B 78 AFR 80 (118)
T ss_dssp EEB
T ss_pred Eec
Confidence 988
No 62
>4ajy_B Transcription elongation factor B polypeptide 2; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A 3ztc_A* 3ztd_A* 3zun_A* 1lm8_B 4b95_A* 2fnj_B 4b9k_A* 4awj_A*
Probab=99.67 E-value=1e-16 Score=128.22 Aligned_cols=73 Identities=18% Similarity=0.243 Sum_probs=68.9
Q ss_pred CEEEEEeCCCc-EEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCcccccccCC-------CCeEEE
Q 023989 1 MKLTVKTLKGS-HFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSE-------DGFLVV 72 (274)
Q Consensus 1 M~I~VKtl~g~-~~~ieV~~~~TV~~LK~kI~~~~g~~~~p~~~qkLI~~GK~L~D~~tL~d~~I~~-------~~~I~v 72 (274)
|.|+|+...++ ++.++|++++||.+||++|+.+.| +|+++|||||+||+|+|++||++|||++ +++|++
T Consensus 1 m~vFl~Ikr~ktTI~ldve~sdTV~~lK~kI~~~~g---iPp~qQrLI~~Gk~LeD~kTL~dy~I~~~ta~~q~~atl~L 77 (118)
T 4ajy_B 1 MDVFLMIRRHKTTIFTDAKESSTVFELKRIVEGILK---RPPDEQRLYKDDQLLDDGKTLGECGFTSQTARPQAPATVGL 77 (118)
T ss_dssp CEEEEEEEEBTEEEEEEEETTSBHHHHHHHHHHHHC---CCGGGEEEEETTEECCTTSBTTTTTCCGGGSBTTBCEEEEE
T ss_pred CceEEEEecCCEEEEEEcCCCChHHHHHHHHHHHHC---CCHHHeEEEeCCeECCCcCCHHHcCCCcCcccCCCCCEEEE
Confidence 77888877776 788999999999999999999999 9999999999999999999999999999 999999
Q ss_pred Eecc
Q 023989 73 MLSK 76 (274)
Q Consensus 73 ~v~k 76 (274)
+++.
T Consensus 78 vlr~ 81 (118)
T 4ajy_B 78 AFRA 81 (118)
T ss_dssp EECC
T ss_pred EEec
Confidence 9986
No 63
>2kd0_A LRR repeats and ubiquitin-like domain-containing protein AT2G30105; ubiquitin-like protein, NESG, leucine-rich repeat, structural genomics; NMR {Arabidopsis thaliana}
Probab=99.67 E-value=2.3e-16 Score=119.10 Aligned_cols=70 Identities=27% Similarity=0.354 Sum_probs=66.4
Q ss_pred EEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCcccccccCCCCeEEEEec
Q 023989 3 LTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVMLS 75 (274)
Q Consensus 3 I~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~~p~~~qkLI~~GK~L~D~~tL~d~~I~~~~~I~v~v~ 75 (274)
+.++++.|+.|.|+|++++||.+||++|++..| +++++|||+|+||.|+|+++|++|+|++|++|+|+++
T Consensus 14 ~~~~~~~g~~~~l~v~~~~TV~~LK~~I~~~~g---ip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~l~l~~s 83 (85)
T 2kd0_A 14 KLTVKFGGKSIPLSVSPDCTVKDLKSQLQPITN---VLPRGQKLIFKGKVLVETSTLKQSDVGSGAKLMLMAS 83 (85)
T ss_dssp EEEEEETTEEEEEEECTTSBHHHHHHHHHHHHC---CCTTTCEEEETTEECCTTCBTTTTTCCTTEEEEEECC
T ss_pred EEEEEECCEEEEEEECCCCcHHHHHHHHHHHHC---cChHHEEEEECCeECCCcCCHHHCCCCCCCEEEEEEe
Confidence 457778999999999999999999999999999 9999999999999999999999999999999999875
No 64
>1we6_A Splicing factor, putative; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=99.67 E-value=1.6e-16 Score=125.64 Aligned_cols=76 Identities=28% Similarity=0.361 Sum_probs=71.8
Q ss_pred CEEEEEeC---CCcEEEEEeCC-CCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCcccccccCCCCeEEEEecc
Q 023989 1 MKLTVKTL---KGSHFEIRVQP-SDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVMLSK 76 (274)
Q Consensus 1 M~I~VKtl---~g~~~~ieV~~-~~TV~~LK~kI~~~~g~~~~p~~~qkLI~~GK~L~D~~tL~d~~I~~~~~I~v~v~k 76 (274)
|+|+||+. .|+.+.|+|++ ++||.+||++|+...| +++++|||+|+||+|+|+++|++|+|++|++|+|+++.
T Consensus 28 i~i~Vk~~~~~~g~~~~l~v~~l~~TV~~LK~~I~~~~g---ip~~~QrL~~~Gk~L~D~~tL~~y~I~~g~~l~l~~r~ 104 (111)
T 1we6_A 28 ATIRVSKPNENDGQFMEITVQSLSENVGSLKEKIAGEIQ---IPANKQKLSGKAGFLKDNMSLAHYNVGAGEILTLSLRE 104 (111)
T ss_dssp EEEEECCTTCSSSCCEEEEESCSSSBHHHHHHHHHHHTT---CCTTTSEEECSSSBCCTTSBTTTTTCSSSCEEEEECSS
T ss_pred EEEEEEecccCCCcEEEEEecCCCCcHHHHHHHHHHHHC---CCHHHeEEEECCEECCCCCcHHHCCCCCCCEEEEEEEc
Confidence 68999998 88999999998 9999999999999999 99999999999999999999999999999999999987
Q ss_pred CCC
Q 023989 77 SKT 79 (274)
Q Consensus 77 ~k~ 79 (274)
+..
T Consensus 105 ~GG 107 (111)
T 1we6_A 105 RSG 107 (111)
T ss_dssp CCS
T ss_pred CCC
Confidence 643
No 65
>1v86_A DNA segment, CHR 7, wayne state university 128, expressed; ubiquitin fold, structural genomics, D7WSU128E protein; HET: DNA; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.67 E-value=7.1e-17 Score=124.49 Aligned_cols=71 Identities=23% Similarity=0.356 Sum_probs=66.0
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCcccccccCCCCeEEEEecc
Q 023989 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVMLSK 76 (274)
Q Consensus 1 M~I~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~~p~~~qkLI~~GK~L~D~~tL~d~~I~~~~~I~v~v~k 76 (274)
|+|+|| +.++.|.|+|++++||.+||++|++++| +++++|||+|+||.| |+.+|++|+|+++++|+||.++
T Consensus 18 ~~i~Vk-~~g~~~~i~v~~~~TV~~LK~~I~~~tg---ip~~~QrL~~~Gk~L-dd~tL~~~~i~~g~~i~lv~~~ 88 (95)
T 1v86_A 18 VDLKII-WNKTKHDVKVPLDSTGSELKQKIHSITG---LPPAMQKVMYKGLVP-EDKTLREIKVTSGAKIMVVGST 88 (95)
T ss_dssp EEEEEE-ETTEEEEEEECTTSBHHHHHHHHHHHHC---SCSTTCCCBSSSBCC-SSSBHHHHCCCTTEEEEECCSS
T ss_pred EEEEEE-ECCEEEEEEECCCCcHHHHHHHHHHHHC---cCHHHeEEEECCeeC-CcCcHHHCCCCCCCEEEEEecc
Confidence 678998 5789999999999999999999999999 999999999999999 5569999999999999998765
No 66
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=99.66 E-value=2.6e-16 Score=133.02 Aligned_cols=74 Identities=41% Similarity=0.599 Sum_probs=71.6
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCcccccccCCCCeEEEEeccC
Q 023989 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVMLSKS 77 (274)
Q Consensus 1 M~I~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~~p~~~qkLI~~GK~L~D~~tL~d~~I~~~~~I~v~v~k~ 77 (274)
|+|+||+++|+++.|+|++++||.+||++|+++.| +++++|||+|+|+.|+|+.+|++|+|+++++|+|+++.+
T Consensus 21 m~i~Vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~g---ip~~~QrL~~~g~~L~d~~tL~~~~i~~~~~l~l~~~~~ 94 (172)
T 3u30_A 21 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 94 (172)
T ss_dssp EEEEEEETTTEEEEEEECTTCBHHHHHHHHHHHHC---CCGGGEEEEETTEECCTTCBTGGGTCCTTCEEEEEECCC
T ss_pred EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHC---cChHHEEEEECCccccccCCHhHcCCcccceeeeeeccc
Confidence 79999999999999999999999999999999999 999999999999999999999999999999999998754
No 67
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=99.66 E-value=2.9e-16 Score=130.75 Aligned_cols=73 Identities=30% Similarity=0.432 Sum_probs=70.8
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEE-e-CCeecCCCCcccccccCCCCeEEEEecc
Q 023989 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLI-H-NGKVLKDETTLADNKVSEDGFLVVMLSK 76 (274)
Q Consensus 1 M~I~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~~p~~~qkLI-~-~GK~L~D~~tL~d~~I~~~~~I~v~v~k 76 (274)
|+|+||+++|+.+.++|++++||.+||++|++..| +|+++|||+ | +|+.|+|+.+|++|+|++|++|+++++.
T Consensus 3 m~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~g---ip~~~QrL~~~~~g~~L~d~~tL~~y~i~~~~~l~l~~~~ 77 (159)
T 3rt3_B 3 WDLTVKMLAGNEFQVSLSSSMSVSELKAQITQKIG---VHAFQQRLAVHPSGVALQDRVPLASQGLGPGSTVLLVVDK 77 (159)
T ss_dssp CEEEEEETTSCEEEEECCTTCCHHHHHHHHHHHHC---CCGGGEEEEEETTCCBCCTTSCGGGGTCCTTCEEEEEECC
T ss_pred eEEEEEECCCCEEEEEeCCCCcHHHHHHHHHHHhC---CCHHHEEEEEcCCCCCCCCCCCHHHcCCCCCCEEEEEccC
Confidence 79999999999999999999999999999999999 999999999 9 7999999999999999999999999873
No 68
>3q3f_A Ribonuclease/ubiquitin chimeric protein; domain SWAP, oligomerization, ubiquitin insertion, hydrolase binding; 2.17A {Bacillus amyloliquefaciens}
Probab=99.66 E-value=2.6e-16 Score=135.96 Aligned_cols=75 Identities=39% Similarity=0.552 Sum_probs=72.6
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCcccccccCCCCeEEEEeccCC
Q 023989 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVMLSKSK 78 (274)
Q Consensus 1 M~I~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~~p~~~qkLI~~GK~L~D~~tL~d~~I~~~~~I~v~v~k~k 78 (274)
|+|+||+++|+++.|+|++++||.+||++|+++.| +|+++|||+|+||.|+|+.+|++|+|+++++|+|+++.+.
T Consensus 106 MqI~VKtl~Gkt~~l~V~~s~TV~~LK~kI~~~~g---Ip~~~QrLi~~Gk~L~D~~tL~dygI~~gstI~LvlrlrG 180 (189)
T 3q3f_A 106 GQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRG 180 (189)
T ss_dssp EEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHC---CCGGGCCEEETTEECCTTCBGGGGTCCTTCEEEECCCCCC
T ss_pred eeeeeecCCCCEEEEEeCCCCcHHHHHHHHHhccC---CCHHHEEEEECCEECCCCCCHHHCCCCCCCEEEEEEEcCC
Confidence 89999999999999999999999999999999999 9999999999999999999999999999999999998764
No 69
>4dbg_A Ranbp-type and C3HC4-type zinc finger-containing; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens} PDB: 2lgy_A
Probab=99.65 E-value=4.6e-16 Score=122.36 Aligned_cols=74 Identities=19% Similarity=0.214 Sum_probs=68.9
Q ss_pred CEEEEEeCCC--cEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCccccccc-CCCCeEEEEeccC
Q 023989 1 MKLTVKTLKG--SHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKV-SEDGFLVVMLSKS 77 (274)
Q Consensus 1 M~I~VKtl~g--~~~~ieV~~~~TV~~LK~kI~~~~g~~~~p~~~qkLI~~GK~L~D~~tL~d~~I-~~~~~I~v~v~k~ 77 (274)
|+|+|++..+ ..+.|+|++++||.+||++|+++.| +|+++|||||+|+.|+|+++|.+||| ++|++||+++...
T Consensus 25 l~v~v~d~~s~~~~i~l~V~ps~TV~~LK~~I~~k~G---ipp~~QRli~ggkll~D~~TL~~ygI~~~G~t~hL~l~~~ 101 (105)
T 4dbg_A 25 LWVSVEDAQMHTVTIWLTVRPDMTVASLKDMVFLDYG---FPPVLQQWVIGQRLARDQETLHSHGVRQNGDSAYLYLLSA 101 (105)
T ss_dssp EEEEEEESSSCCEEEEEEECTTCBHHHHHHHHHHHHC---CCGGGEEEEETTEEECTTCBTGGGTCCSTTCEEEEEECCC
T ss_pred EEEEEEccCCCCceEEEEECCcChHHHHHHHHHHHhC---CCHHHEEEeccCeEccCcCcHHHcCCCCCCCEEEEEEEec
Confidence 6899999985 6899999999999999999999999 99999999999999999999999999 5999999998643
No 70
>2daf_A FLJ35834 protein; hypothetical protein FLJ35834, ubiquitin-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.65 E-value=4.2e-16 Score=124.33 Aligned_cols=74 Identities=19% Similarity=0.276 Sum_probs=67.7
Q ss_pred EEEEE-eCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCcccccccCCCCeEEEEeccCC
Q 023989 2 KLTVK-TLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVMLSKSK 78 (274)
Q Consensus 2 ~I~VK-tl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~~p~~~qkLI~~GK~L~D~~tL~d~~I~~~~~I~v~v~k~k 78 (274)
.|+|+ ...++.+.++++++.||++||++|+.+.+ +|+++|+|||+||+|+|+.||.+|||++|.+|||+++...
T Consensus 17 tvkv~l~~~~~k~tv~v~~d~TV~dLKe~ls~~~~---iP~e~qrLIy~GKiLKD~eTL~~~gIk~g~TIhLvi~s~~ 91 (118)
T 2daf_A 17 TVKVVLIPVGQEIVIPFKVDTILKYLKDHFSHLLG---IPHSVLQIRYSGKILKNNETLVQHGVKPQEIVQVEIFSTN 91 (118)
T ss_dssp EEEEEETTTCCEEEEEECSSSCSHHHHHHHHHHHT---CCTTTEEEEETTEEECSSCCHHHHSCCSSCEEEEEEEESC
T ss_pred EEEEEEcCCCcEEEEEeCCCCcHHHHHHHHHhhhC---CChHHEEEEECCeEcCCcchHHHcCCCCCCEEEEEEecCC
Confidence 45565 45688999999999999999999999999 9999999999999999999999999999999999987644
No 71
>3u5e_m 60S ribosomal protein L40; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_m 4b6a_m 4a18_K 4a19_K 4a1b_K 4a1d_K 4adx_5 3izc_p 3izs_p 3iz5_p 3izr_p
Probab=99.63 E-value=1.7e-17 Score=134.54 Aligned_cols=75 Identities=39% Similarity=0.552 Sum_probs=0.0
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCcccccccCCCCeEEEEeccCC
Q 023989 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVMLSKSK 78 (274)
Q Consensus 1 M~I~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~~p~~~qkLI~~GK~L~D~~tL~d~~I~~~~~I~v~v~k~k 78 (274)
|+|+||+++|+++.|+|++++||.+||++|++..| +|+++|+|+|+|+.|+|+.+|++|+|++|++|+|+++.+.
T Consensus 1 M~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~g---ip~~~QrLi~~Gk~L~D~~tL~~~~I~~gsti~l~~rl~G 75 (128)
T 3u5e_m 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEG---IPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRG 75 (128)
T ss_dssp ------------------------------------------------------------------------------
T ss_pred CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhC---cChHHEEEEECCEECCCCCchhhhccCCCCEEEEEEEcCC
Confidence 89999999999999999999999999999999999 9999999999999999999999999999999999998654
No 72
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=99.63 E-value=1.2e-15 Score=125.08 Aligned_cols=73 Identities=41% Similarity=0.608 Sum_probs=70.9
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCcccccccCCCCeEEEEecc
Q 023989 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVMLSK 76 (274)
Q Consensus 1 M~I~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~~p~~~qkLI~~GK~L~D~~tL~d~~I~~~~~I~v~v~k 76 (274)
|+|+||+++|+.+.++|++++||.+||++|+++.| +++++|+|+|+|+.|+|+.+|++|+|+++++|+|+.+.
T Consensus 1 M~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~g---ip~~~q~L~~~g~~L~d~~tL~~~~i~~~~~l~l~~~~ 73 (152)
T 3b08_A 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRL 73 (152)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHC---CCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECC
T ss_pred CEEEEEeCCCCEEEEEECCCCCHHHHHHHHHHHHC---cChHHeEEEECCeECcCcccHHHhccCCCCeeEEEeec
Confidence 89999999999999999999999999999999999 99999999999999999999999999999999999864
No 73
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=99.62 E-value=1.9e-15 Score=123.94 Aligned_cols=74 Identities=41% Similarity=0.599 Sum_probs=71.4
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCcccccccCCCCeEEEEeccC
Q 023989 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVMLSKS 77 (274)
Q Consensus 1 M~I~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~~p~~~qkLI~~GK~L~D~~tL~d~~I~~~~~I~v~v~k~ 77 (274)
|+|+||+++|+.+.++|++++||.+||++|+++.| +++++|||+|+||.|+|+++|++|+|++|++|+++++.+
T Consensus 77 ~~i~Vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~g---i~~~~qrL~~~g~~L~d~~tL~~~~i~~~~~i~l~~r~~ 150 (152)
T 3b08_A 77 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 150 (152)
T ss_dssp EEEEEEESSSCEEEEEECTTCBHHHHHHHHHHHHC---CCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECCC
T ss_pred cceeeeecCCCEEEEEeCCCCcHHHHHHHHHHHhC---cChhhEEEEECCEECCCCCCHHHcCCCCCCEEEEEEecC
Confidence 68999999999999999999999999999999999 999999999999999999999999999999999998765
No 74
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=99.61 E-value=1.3e-15 Score=128.83 Aligned_cols=74 Identities=41% Similarity=0.599 Sum_probs=69.3
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCcccccccCCCCeEEEEeccC
Q 023989 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVMLSKS 77 (274)
Q Consensus 1 M~I~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~~p~~~qkLI~~GK~L~D~~tL~d~~I~~~~~I~v~v~k~ 77 (274)
|.|+||+++|+++.++|++++||.+||++|+.+.| +|+++|||+|+|+.|+|+++|.+|+|+++++|+++++.+
T Consensus 97 ~~i~Vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~g---ip~~~q~L~~~g~~L~D~~tL~~y~i~~g~tl~l~~rlr 170 (172)
T 3u30_A 97 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 170 (172)
T ss_dssp EEEEEEESSCCEEEEEECTTCBHHHHHHHHHHHHC---CCGGGCCEEETTEECCTTSBSGGGTCCTTCEEEECC---
T ss_pred ccceeecccCcceeEEecCCCCHHHHHHHHHHHhC---CCceeEEEEECCccCCCCCcHHHhCCCCCCEEEEEEecC
Confidence 57899999999999999999999999999999999 999999999999999999999999999999999998764
No 75
>2dzj_A Synaptic glycoprotein SC2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.60 E-value=6.5e-16 Score=117.74 Aligned_cols=69 Identities=23% Similarity=0.276 Sum_probs=63.4
Q ss_pred CEEEEEeCCCcEE--EE-EeCCCCCHHHHHHHHHHH-hCCCCCCCCCeEEEeC--CeecCCCCcccccccCCCCeEEE
Q 023989 1 MKLTVKTLKGSHF--EI-RVQPSDTVMAVKKNIEDV-QGKDNYPCGQQLLIHN--GKVLKDETTLADNKVSEDGFLVV 72 (274)
Q Consensus 1 M~I~VKtl~g~~~--~i-eV~~~~TV~~LK~kI~~~-~g~~~~p~~~qkLI~~--GK~L~D~~tL~d~~I~~~~~I~v 72 (274)
|+|+||+++|+.+ .| +|++++||.+||++|++. .| +++++|||+|. ||+|+|+++|++|+|+++++|||
T Consensus 11 M~I~Vk~~~g~~~~~~l~~v~~~~TV~~lK~~I~~~~~~---i~~~~QrL~~~~~Gk~L~D~~tL~~y~i~~~stl~~ 85 (88)
T 2dzj_A 11 YEVEILDAKTREKLCFLDKVEPHATIAEIKNLFTKTHPQ---WYPARQSLRLDPKGKSLKDEDVLQKLPVGTTATLYF 85 (88)
T ss_dssp EEEEEEESSSCCCCEEEEEECSSCBHHHHHHHHHHHCSS---SCTTTCCEESSTTSCCCCTTCBTTTSSCCSEEEEEE
T ss_pred EEEEEECCCCCEEeeEEeEcCCCCcHHHHHHHHHHHhcC---CChHHeEEEecCCCcCcCCCCCHHHcCCCCCCEEEE
Confidence 7899999998775 58 999999999999999995 67 99999999976 99999999999999999999875
No 76
>1we7_A SF3A1 protein; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 1zkh_A
Probab=99.60 E-value=2.7e-15 Score=119.28 Aligned_cols=76 Identities=22% Similarity=0.390 Sum_probs=69.2
Q ss_pred CEEEEEeC----------CCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCcccccccCCCCeE
Q 023989 1 MKLTVKTL----------KGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFL 70 (274)
Q Consensus 1 M~I~VKtl----------~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~~p~~~qkLI~~GK~L~D~~tL~d~~I~~~~~I 70 (274)
|+|+|+.. +|+.+.|+|++++||.+||++|+...| +++++|||+|+|+.|+|+.+|++|+|+++++|
T Consensus 26 i~l~V~~p~~~~~~~~~L~G~~~~l~v~~~~TV~~LK~~I~~~~g---ip~~~QrL~~~Gk~L~D~~tL~~y~i~~g~~i 102 (115)
T 1we7_A 26 VSIKVQVPNMQDKTEWKLNGQGLVFTLPLTDQVSVIKVKIHEATG---MPAGKQKLQYEGIFIKDSNSLAYYNMASGAVI 102 (115)
T ss_dssp EEEEEEECCCSSSCSSCCSSEEEEEEECSCSBTHHHHHHHHHHSS---CCTTTEEEEETTEEECTTSBHHHHTCCSSCEE
T ss_pred EEEEEEcCCCccccccccCCeEEEEEECCCCCHHHHHHHHHHHHC---CChHHEEEEECCEECCCCCCHHHCCCCCCCEE
Confidence 35677764 578999999999999999999999999 99999999999999999999999999999999
Q ss_pred EEEeccCCC
Q 023989 71 VVMLSKSKT 79 (274)
Q Consensus 71 ~v~v~k~k~ 79 (274)
+|+++.+..
T Consensus 103 ~lv~rl~GG 111 (115)
T 1we7_A 103 HLALKERSG 111 (115)
T ss_dssp EEEECCCSC
T ss_pred EEEEEcCCC
Confidence 999987643
No 77
>3u5c_f 40S ribosomal protein S31; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_f
Probab=99.59 E-value=1.3e-16 Score=133.46 Aligned_cols=76 Identities=38% Similarity=0.540 Sum_probs=0.0
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCcccccccCCCCeEEEEeccCCC
Q 023989 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVMLSKSKT 79 (274)
Q Consensus 1 M~I~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~~p~~~qkLI~~GK~L~D~~tL~d~~I~~~~~I~v~v~k~k~ 79 (274)
|+|+||+++|+.+.|+|++++||.+||.+|++..| +|+++|+|+|+|+.|+|+.+|++|+|+++++|+|+++.+..
T Consensus 1 MqI~VK~l~G~~~~l~V~~~~TV~~LK~~I~~~~g---ip~~~QrLi~~Gk~L~D~~tL~dygI~~gstL~Lvlrl~GG 76 (152)
T 3u5c_f 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEG---IPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76 (152)
T ss_dssp -------------------------------------------------------------------------------
T ss_pred CEEEEEeCCCCEEEEEECCCCCHHHHHHHHHHHhC---CCHHHEEEEECCEEccccCcHHHcCCCCCCEEEEEeeccCC
Confidence 89999999999999999999999999999999999 99999999999999999999999999999999999876543
No 78
>2dzm_A FAS-associated factor 1; ubiquitin-like domain, HFAF1, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.56 E-value=3.7e-15 Score=116.33 Aligned_cols=72 Identities=19% Similarity=0.263 Sum_probs=65.6
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEe--CCeecCCCCcccccccCCCCeEEEEecc
Q 023989 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIH--NGKVLKDETTLADNKVSEDGFLVVMLSK 76 (274)
Q Consensus 1 M~I~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~~p~~~qkLI~--~GK~L~D~~tL~d~~I~~~~~I~v~v~k 76 (274)
|.++++++.|+.+.|+|++++||.+||++|++++| +|+++|||+| .|+ |+|+.+|++|+|++|++|||++..
T Consensus 9 m~~~~vk~~Gk~~~v~v~~~~TV~~LK~~I~~~tg---Ipp~~QkLi~~~~gk-L~D~~tLs~~~I~~gstL~lvl~~ 82 (100)
T 2dzm_A 9 MLDFRVEYRDRNVDVVLEDTCTVGEIKQILENELQ---IPVSKMLLKGWKTGD-VEDSTVLKSLHLPKNNSLYVLTPD 82 (100)
T ss_dssp EEEEEEECSSCEEEEEEETTSBHHHHHHHHHHHHC---CCTTTCCEECCSSSC-CCTTSBHHHHCCCSEEEEEECCSS
T ss_pred eEEEEEEeCCeEEEEEECCCCcHHHHHHHHHHHHC---CChhHeEEEccCCCC-CCCcCCHHHcCCCCCCEEEEEecC
Confidence 56777789999999999999999999999999999 9999999996 566 999999999999999999987643
No 79
>3ai5_A Yeast enhanced green fluorescent protein, ubiquit; ubiquitin, fusion protein, fluore protein, transcription; HET: CR2; 1.40A {Aequorea victoria} PDB: 3ako_B*
Probab=99.55 E-value=1.2e-14 Score=134.08 Aligned_cols=73 Identities=41% Similarity=0.608 Sum_probs=69.5
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCcccccccCCCCeEEEEecc
Q 023989 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVMLSK 76 (274)
Q Consensus 1 M~I~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~~p~~~qkLI~~GK~L~D~~tL~d~~I~~~~~I~v~v~k 76 (274)
|+|+||+++|+.+.|+|++++||.+||++|+++.| +++++|||+|+||+|+|+++|++|+|+++++|+|+++.
T Consensus 234 MqI~VKtl~Gk~~~leV~~s~TV~dLK~kI~~~~G---Ip~~~QRLi~~Gk~L~D~~TLsdygI~~gstL~LvlRL 306 (307)
T 3ai5_A 234 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRL 306 (307)
T ss_dssp EEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHC---CCGGGCEEEETTEECCTTSBTGGGTCCTTCEEEEEC--
T ss_pred EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHC---cChHHEEEEeCCeecCCCCCHHHcCCCCCCEEEEEEeC
Confidence 78999999999999999999999999999999999 99999999999999999999999999999999999875
No 80
>4b6w_A Tubulin-specific chaperone; CAP-Gly, ubiquitin-like; HET: MSE; 2.35A {Trypanosoma brucei brucei strain 927}
Probab=99.54 E-value=6.3e-15 Score=111.87 Aligned_cols=73 Identities=15% Similarity=0.098 Sum_probs=64.3
Q ss_pred EEEEE--eCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEe-------CCeecCCCCcccccccCCCCeEEE
Q 023989 2 KLTVK--TLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIH-------NGKVLKDETTLADNKVSEDGFLVV 72 (274)
Q Consensus 2 ~I~VK--tl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~~p~~~qkLI~-------~GK~L~D~~tL~d~~I~~~~~I~v 72 (274)
+|.|. ..+.+.+++.+++++||.+||++|+.+.| +|+++||||| .|+.|+|+++|++|||++|++|||
T Consensus 4 ~v~iths~~~~~~~E~r~~~s~TI~~lK~ki~~~~G---ip~~~QrLi~~~~~~~~~g~~l~d~~tL~~Y~i~~g~~ihl 80 (86)
T 4b6w_A 4 KVSLTHSASRMRVPEKRYGLAQTIESIKENVFTHFA---TPPEYMQLQLIDDRGITIEKNMANDKQLGYYQCRDEFVIHV 80 (86)
T ss_dssp EEEEEETTCSCCEEEEEEETTSBHHHHHHHHHTTSC---CCGGGEEEEEECTTSCEEESSCCTTSBGGGGTCCTTCEEEE
T ss_pred EEEEEEcCCCCeEEEEEcCccCcHHHHHHHHHHHHC---CCHHHEEEEEecCCCCceeeEcCCCCCHHHCCCCCCCEEEE
Confidence 44554 34566789999999999999999999999 9999999997 489999999999999999999999
Q ss_pred EeccC
Q 023989 73 MLSKS 77 (274)
Q Consensus 73 ~v~k~ 77 (274)
+-+.|
T Consensus 81 vd~~P 85 (86)
T 4b6w_A 81 VDLQP 85 (86)
T ss_dssp EECCC
T ss_pred EeCCC
Confidence 97654
No 81
>1wf9_A NPL4 family protein; beta-grAsp fold like domain, hypothetical protein, structural genomics, NPPSFA; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=99.52 E-value=1.9e-14 Score=113.20 Aligned_cols=71 Identities=20% Similarity=0.266 Sum_probs=65.7
Q ss_pred CEEEEEeCCCcEEEEEeC-CCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCe-----------e----cCCCCccccccc
Q 023989 1 MKLTVKTLKGSHFEIRVQ-PSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGK-----------V----LKDETTLADNKV 64 (274)
Q Consensus 1 M~I~VKtl~g~~~~ieV~-~~~TV~~LK~kI~~~~g~~~~p~~~qkLI~~GK-----------~----L~D~~tL~d~~I 64 (274)
|+|+||+.+|+. .|+|+ +++||.+||++|+++.+ +++++|+|+|.|+ . ++|+++|++|||
T Consensus 8 M~irvrs~~G~~-~v~v~~~~~Tv~~LK~kI~~~~g---ip~~~QrL~~~~~~~~~k~~~~~~~l~~~l~d~~tL~~~gi 83 (107)
T 1wf9_A 8 TMLRVRSRDGLE-RVSVDGPHITVSQLKTLIQDQLQ---IPIHNQTLSTNRNLLLAKSPSDFLAFTDMADPNLRISSLNL 83 (107)
T ss_dssp EEEEEECSSCEE-EEEECCTTSBHHHHHHHHHHHSC---CCTTTCCCBSSGGGGTCCSHHHHTTCCSSCCTTCBGGGTCC
T ss_pred EEEEEECCCCCE-EEEECCCCCcHHHHHHHHHHHhC---cCcccCEEEECCccccccCccccccccccCCCCCCHHHCCC
Confidence 789999999955 89999 99999999999999999 9999999999998 3 588999999999
Q ss_pred CCCCeEEEEec
Q 023989 65 SEDGFLVVMLS 75 (274)
Q Consensus 65 ~~~~~I~v~v~ 75 (274)
++|++|||+..
T Consensus 84 ~~G~~L~l~~~ 94 (107)
T 1wf9_A 84 AHGSMVYLAYE 94 (107)
T ss_dssp CTTCEEECCCS
T ss_pred CCCCEEEEEeC
Confidence 99999998865
No 82
>2kjr_A CG11242; UBL, ubiquitin, ubiquitin-like, structural genomics, PSI-2, protein structure initiative; NMR {Drosophila melanogaster}
Probab=99.50 E-value=5.4e-14 Score=108.64 Aligned_cols=70 Identities=20% Similarity=0.230 Sum_probs=62.2
Q ss_pred CEEEEEeCCC--cEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeC--Ce---ec-CCCCcccccccCCCCeEEE
Q 023989 1 MKLTVKTLKG--SHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHN--GK---VL-KDETTLADNKVSEDGFLVV 72 (274)
Q Consensus 1 M~I~VKtl~g--~~~~ieV~~~~TV~~LK~kI~~~~g~~~~p~~~qkLI~~--GK---~L-~D~~tL~d~~I~~~~~I~v 72 (274)
++|+|+...+ +.++++|++++||.+||++|+.+.| +|+++|||+|. |+ .| +|+++|++|+|++|++|+|
T Consensus 16 v~l~It~s~~~~~~~~~~v~~~~TV~~LK~kI~~~~G---iP~~~QrL~~~~~g~~~~~L~~D~~tL~~Y~i~~gstihl 92 (95)
T 2kjr_A 16 IKVNVSNSHNDAVAFEVKLAKDLTVAQLKTKLEILTG---GCAGTMKVQVFKGDTCVSTMDNNDAQLGYYANSDGLRLHV 92 (95)
T ss_dssp EEEEEEESSCSCEEEEEEEETTCBHHHHHHHHHHHHC---SCTTTEEEEEEETTEEEEECCCTTSBHHHHCCSSSCEEEE
T ss_pred EEEEEEECCCCceEEEEEeCccCHHHHHHHHHHHHHC---cCHHHeEEEEecCCcccceeCCCCCCHhHCCcCCCCEEEE
Confidence 3677887655 4789999999999999999999999 99999999998 55 34 8999999999999999998
Q ss_pred E
Q 023989 73 M 73 (274)
Q Consensus 73 ~ 73 (274)
+
T Consensus 93 v 93 (95)
T 2kjr_A 93 V 93 (95)
T ss_dssp E
T ss_pred E
Confidence 7
No 83
>1v6e_A Cytoskeleton-associated protein 1; tubulin-specific chaperone B, tubulin folding cofactor B, microtubule, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.48 E-value=8.8e-14 Score=106.91 Aligned_cols=75 Identities=21% Similarity=0.173 Sum_probs=64.8
Q ss_pred CEEEEEeCCCc-EEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCC---ee----cCCCCcccccccCCCCeEEE
Q 023989 1 MKLTVKTLKGS-HFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNG---KV----LKDETTLADNKVSEDGFLVV 72 (274)
Q Consensus 1 M~I~VKtl~g~-~~~ieV~~~~TV~~LK~kI~~~~g~~~~p~~~qkLI~~G---K~----L~D~~tL~d~~I~~~~~I~v 72 (274)
|+|+|+..... .++++|++++||.+||++|+.+.| +|+++|||+|.| +. |+|+++|.+|||+++++|||
T Consensus 8 v~l~I~~~~~~~~~~~~v~~~~TV~~lK~ki~~~~g---ip~~~qrL~~~~~~g~~~~~l~~D~~tL~~y~i~~g~~l~v 84 (95)
T 1v6e_A 8 VMVFISSSLNSFRSEKRYSRSLTIAEFKCKLELVVG---SPASCMELELYGADDKFYSKLDQEDALLGSYPVDDGCRIHV 84 (95)
T ss_dssp EEEEEEETTSSSCEEEEECTTSBHHHHHHHHHHHTC---SCTTTCBCEEECSSSCEEEECCCSSSBTTSSSCCTTCEEEE
T ss_pred EEEEEEECCCCeeEEEEcCccCHHHHHHHHHHHHHC---CCHHHeEEEEeCCCCccccccCCCcCCHhHCCCCCCCEEEE
Confidence 36778875543 689999999999999999999999 999999999986 54 58999999999999999999
Q ss_pred EeccCC
Q 023989 73 MLSKSK 78 (274)
Q Consensus 73 ~v~k~k 78 (274)
+...+.
T Consensus 85 ~d~~P~ 90 (95)
T 1v6e_A 85 IDHSGS 90 (95)
T ss_dssp BCCSCC
T ss_pred EECCcc
Confidence 875543
No 84
>2kj6_A Tubulin folding cofactor B; methods development, NESG, solution PSI-2, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=99.48 E-value=8.1e-14 Score=108.05 Aligned_cols=72 Identities=17% Similarity=0.069 Sum_probs=62.8
Q ss_pred EEEEEeCC--CcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCC---ee----cCCCCcccccccCCCCeEEE
Q 023989 2 KLTVKTLK--GSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNG---KV----LKDETTLADNKVSEDGFLVV 72 (274)
Q Consensus 2 ~I~VKtl~--g~~~~ieV~~~~TV~~LK~kI~~~~g~~~~p~~~qkLI~~G---K~----L~D~~tL~d~~I~~~~~I~v 72 (274)
+|.|+.-. ++.++++|++++||.+||++|+.+.| +|+++|||+|.| +. ++|+++|++|+|++|++|+|
T Consensus 16 ~l~It~s~~~~~~~e~~v~~~~TV~~LK~kIe~~~G---ip~~~QrLi~~g~~g~~~~~L~~D~~tL~~Y~I~~g~~Ihl 92 (97)
T 2kj6_A 16 HLHITHANLKSFSADARFSPQMSVEAVKEKLWKKCG---TSVNSMALELYDDSGSKVAVLSDDSRPLGFFSPFDGFRLHI 92 (97)
T ss_dssp EEEEEETTSSCCCEEEEECTTCCHHHHHHHHHHHHC---CCTTSEEEEEECSSSCBCCCSSGGGSCHHHHCCCSCCEEEE
T ss_pred EEEEEECCCCceEEEEEeCCCChHHHHHHHHHHHHC---cCHHHeEEEEecCCCcccceecCCcCCHHHCCCCCCCEEEE
Confidence 56777543 35789999999999999999999999 999999999988 43 58999999999999999999
Q ss_pred Eecc
Q 023989 73 MLSK 76 (274)
Q Consensus 73 ~v~k 76 (274)
+-+.
T Consensus 93 vd~~ 96 (97)
T 2kj6_A 93 IDLD 96 (97)
T ss_dssp EECC
T ss_pred EeCC
Confidence 8643
No 85
>1vej_A Riken cDNA 4931431F19; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=99.47 E-value=7.2e-14 Score=102.98 Aligned_cols=46 Identities=15% Similarity=0.331 Sum_probs=43.0
Q ss_pred CCchHHHHHHHHHcCCCCC-CHHHHHHHHHHhcCCHHHHHHHHHcCCCCc
Q 023989 150 GNDLEQTIQQIMDMGGGTW-DKETVTRALQAAYNNPERAVDYLYSGIPET 198 (274)
Q Consensus 150 g~~~e~~i~~i~eMG~~~f-~r~qv~~ALrAafnNpdrAvEyL~~GIP~~ 198 (274)
...|++.|++|++|| | +|+.+++||+++++|++||||||++|||+.
T Consensus 26 e~~ye~qi~qL~eMG---F~dr~~~~~AL~~t~Gnve~Ave~L~~~~~~~ 72 (74)
T 1vej_A 26 EGRYQQELEELKALG---FANRDANLQALVATDGDIHAAIEMLLGASGPS 72 (74)
T ss_dssp TTTSHHHHHHHHHHT---CCCHHHHHHHHHHTTSCHHHHHHHHHTCCCCC
T ss_pred hHHHHHHHHHHHHcC---CCcHHHHHHHHHHhCCCHHHHHHHHHhCCCCC
Confidence 457899999999999 9 899999999999999999999999999864
No 86
>2g3q_A Protein YBL047C; endocytosis, solution structure, UBA domain, endocytosis/signaling protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=99.46 E-value=6.7e-14 Score=92.69 Aligned_cols=40 Identities=20% Similarity=0.371 Sum_probs=38.2
Q ss_pred hHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCHHHHHHHHHcCC
Q 023989 153 LEQTIQQIMDMGGGTWDKETVTRALQAAYNNPERAVDYLYSGI 195 (274)
Q Consensus 153 ~e~~i~~i~eMG~~~f~r~qv~~ALrAafnNpdrAvEyL~~GI 195 (274)
.|+.|++|++|| |+|++|++||++++||+++|+|||++||
T Consensus 4 ~e~~i~~L~~MG---F~~~~a~~AL~~~~~n~e~A~~~L~~~~ 43 (43)
T 2g3q_A 4 KSLAVEELSGMG---FTEEEAHNALEKCNWDLEAATNFLLDSA 43 (43)
T ss_dssp HHHHHHHHHTTT---SCHHHHHHHHHHHTSCHHHHHHHHHTCC
T ss_pred CHHHHHHHHHcC---CCHHHHHHHHHHhCcCHHHHHHHHHcCC
Confidence 378999999999 9999999999999999999999999986
No 87
>2xzm_9 RPS31E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_9
Probab=99.45 E-value=5.7e-15 Score=127.27 Aligned_cols=70 Identities=21% Similarity=0.317 Sum_probs=0.0
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCcccccccCCCCeEEEEeccCC
Q 023989 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVMLSKSK 78 (274)
Q Consensus 1 M~I~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~~p~~~qkLI~~GK~L~D~~tL~d~~I~~~~~I~v~v~k~k 78 (274)
|+|+||+++|+++.|+|++++||.+||.+|++..| +|+++|||||+|++|+|+.+|+ ++++|||+++.+.
T Consensus 1 MqI~VKtL~GktitLeV~~sdTV~~LK~kI~~keG---IP~~qQRLIf~GK~LeD~~TLs-----~~STLhLvlRLrG 70 (189)
T 2xzm_9 1 MQVQVKTLEGETKIYTLEQGTSVLDLKSQISQDMG---FEIDMMTLVNNGFIAPNTELVT-----DDVTYYLSLKLLG 70 (189)
T ss_dssp ------------------------------------------------------------------------------
T ss_pred CEEEEEcCCCCEEEEEECCcChHHHHHHHHHHHhC---cChhHEEEEecCeECCCCCccc-----CCCEEEEEEecCC
Confidence 89999999999999999999999999999999999 9999999999999999999998 8899999987653
No 88
>2kzr_A Ubiquitin thioesterase OTU1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, hydrolase; NMR {Mus musculus}
Probab=99.45 E-value=1.3e-13 Score=103.95 Aligned_cols=72 Identities=18% Similarity=0.338 Sum_probs=64.2
Q ss_pred CEEEEEeCCCcEEEEE-eCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeC--CeecC---CCCcccccccCCCCeEEEEe
Q 023989 1 MKLTVKTLKGSHFEIR-VQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHN--GKVLK---DETTLADNKVSEDGFLVVML 74 (274)
Q Consensus 1 M~I~VKtl~g~~~~ie-V~~~~TV~~LK~kI~~~~g~~~~p~~~qkLI~~--GK~L~---D~~tL~d~~I~~~~~I~v~v 74 (274)
|+|+||+.+|+. .|+ |++++||.+||++|+++.| +++++|+|+|. +|.|+ |+++|++|||++|++|+|..
T Consensus 1 m~i~vr~~~G~~-~v~~l~~~~Tv~~Lk~~I~~~~g---i~~~~qrL~~~~p~k~l~l~~~~~tL~~~gl~~g~~l~v~~ 76 (86)
T 2kzr_A 1 WRVRCKAKGGTH-LLQGLSSRTRLRELQGQIAAITG---IAPGSQRILVGYPPECLDLSDRDITLGDLPIQSGDMLIVEE 76 (86)
T ss_dssp CCEEEEETTEEE-EECSCCTTCBHHHHHHHHHHHTC---CCTTTCCCEESSCCCCCCCCCSSCBTTTSSCCTTCEEECCC
T ss_pred CEEEEEcCCCCE-EeeecCCCCCHHHHHHHHHHHhC---CCccceEEEeCCCCcccccCCCCCCHHHcCCCCCCEEEEEe
Confidence 899999999954 587 9999999999999999999 99999999987 48874 68899999999999998875
Q ss_pred cc
Q 023989 75 SK 76 (274)
Q Consensus 75 ~k 76 (274)
..
T Consensus 77 ~~ 78 (86)
T 2kzr_A 77 DQ 78 (86)
T ss_dssp CS
T ss_pred CC
Confidence 53
No 89
>1vg5_A RSGI RUH-014, rhomboid family protein; UBA domain, cDNA, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=99.45 E-value=1e-13 Score=101.95 Aligned_cols=44 Identities=34% Similarity=0.397 Sum_probs=40.9
Q ss_pred CCchHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCHHHHHHHHHcCCC
Q 023989 150 GNDLEQTIQQIMDMGGGTWDKETVTRALQAAYNNPERAVDYLYSGIP 196 (274)
Q Consensus 150 g~~~e~~i~~i~eMG~~~f~r~qv~~ALrAafnNpdrAvEyL~~GIP 196 (274)
..++++.|++||+|| |+|++|++|||+++||+|||||||++|+.
T Consensus 26 ~~~~ee~I~~L~eMG---F~r~~a~~AL~~~~~nve~Ave~Ll~~~~ 69 (73)
T 1vg5_A 26 VAASEEQIQKLVAMG---FDRTQVEVALAAADDDLTVAVEILMSQSG 69 (73)
T ss_dssp SCCCHHHHHHHHTTT---CCHHHHHHHHHHHTSCHHHHHHHHHTCSC
T ss_pred CcccHHHHHHHHHcC---CCHHHHHHHHHHhCCCHHHHHHHHHHCCC
Confidence 456799999999999 99999999999999999999999999953
No 90
>2io1_B Small ubiquitin-related modifier 3 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=99.43 E-value=3.5e-13 Score=103.82 Aligned_cols=75 Identities=16% Similarity=0.256 Sum_probs=71.6
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCcccccccCCCCeEEEEeccCC
Q 023989 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVMLSKSK 78 (274)
Q Consensus 1 M~I~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~~p~~~qkLI~~GK~L~D~~tL~d~~I~~~~~I~v~v~k~k 78 (274)
|+|+||+.+|+.+.++|.+++++..||++++++.| ++++++||+|.|+.|++++|+++|+++++++|+|++....
T Consensus 8 i~ikVk~~~g~~i~~~v~~~t~l~kl~~~y~~~~g---i~~~~~rf~FdG~~l~~~~Tp~dl~medgD~Idv~~~~~G 82 (94)
T 2io1_B 8 INLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQG---LSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTG 82 (94)
T ss_dssp EEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHHT---CCGGGEEEEETTEECCTTCCTTTTTCCTTCEEEEEECCEE
T ss_pred EEEEEECCCCCEEEEEECCCCHHHHHHHHHHHHhC---CCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEeccC
Confidence 68999999999999999999999999999999999 9999999999999999999999999999999999997654
No 91
>2bwb_A Ubiquitin-like protein DSK2; UBA, signaling protein; 2.3A {Saccharomyces cerevisiae} SCOP: a.5.2.1 PDB: 2bwe_A
Probab=99.42 E-value=1.8e-13 Score=92.09 Aligned_cols=40 Identities=30% Similarity=0.463 Sum_probs=38.0
Q ss_pred chHHHHHHHHHcCCCCC-CHHHHHHHHHHhcCCHHHHHHHHHcC
Q 023989 152 DLEQTIQQIMDMGGGTW-DKETVTRALQAAYNNPERAVDYLYSG 194 (274)
Q Consensus 152 ~~e~~i~~i~eMG~~~f-~r~qv~~ALrAafnNpdrAvEyL~~G 194 (274)
.|+..|++|++|| | +|+.+++||+++++|++||||||++|
T Consensus 6 ~~~~~i~~L~~MG---F~d~~~~~~AL~~~~gnv~~Ave~L~~~ 46 (46)
T 2bwb_A 6 RYEHQLRQLNDMG---FFDFDRNVAALRRSGGSVQGALDSLLNG 46 (46)
T ss_dssp HTHHHHHHHHHTT---CCCHHHHHHHHHHHTTCHHHHHHHHHCC
T ss_pred HHHHHHHHHHHcC---CCcHHHHHHHHHHhCCCHHHHHHHHHcc
Confidence 5789999999999 9 79999999999999999999999987
No 92
>2knz_A Ubiquilin-4; cytoplasm, endoplasmic reticulum, nucleus, phosphoprotein, protein binding; NMR {Mus musculus}
Probab=99.40 E-value=2.9e-13 Score=93.72 Aligned_cols=43 Identities=23% Similarity=0.347 Sum_probs=40.8
Q ss_pred CchHHHHHHHHHcCCCCC-CHHHHHHHHHHhcCCHHHHHHHHHcCCC
Q 023989 151 NDLEQTIQQIMDMGGGTW-DKETVTRALQAAYNNPERAVDYLYSGIP 196 (274)
Q Consensus 151 ~~~e~~i~~i~eMG~~~f-~r~qv~~ALrAafnNpdrAvEyL~~GIP 196 (274)
..|++.|++|++|| | +|+.|++||++++||++||||||++|++
T Consensus 9 ~~~~~~l~~L~~MG---F~~~~~~~~AL~~t~gnve~Ave~L~~~~~ 52 (53)
T 2knz_A 9 VRFQQQLEQLNSMG---FINREANLQALIATGGDINAAIERLLGSQL 52 (53)
T ss_dssp HHHHHHHHHHHTTT---CCCHHHHHHHHHHHTSCHHHHHHHHHHCCC
T ss_pred hHHHHHHHHHHHcC---CCCHHHHHHHHHHhCCCHHHHHHHHHHcCC
Confidence 46899999999999 9 9999999999999999999999999975
No 93
>1t0y_A Tubulin folding cofactor B; ubiquitin-like, cytoskeleton, microtubule, CESG, structural genomics, protein structure initiative, PSI; NMR {Caenorhabditis elegans} SCOP: d.15.1.1
Probab=99.40 E-value=8.5e-13 Score=106.08 Aligned_cols=75 Identities=15% Similarity=0.105 Sum_probs=65.1
Q ss_pred CEEEEEeCCCc-EEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCC---ee----cCCCCcccccccCCCCeEEE
Q 023989 1 MKLTVKTLKGS-HFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNG---KV----LKDETTLADNKVSEDGFLVV 72 (274)
Q Consensus 1 M~I~VKtl~g~-~~~ieV~~~~TV~~LK~kI~~~~g~~~~p~~~qkLI~~G---K~----L~D~~tL~d~~I~~~~~I~v 72 (274)
|+|+|+...+. .++++|++++||.+||.+|+.+.| +|+++|||+|.| +. ++|+++|.+|||++|++|||
T Consensus 7 v~l~V~~~~~~~~~e~~v~~~~TV~~lK~ki~~~~G---ip~~~qrL~~~g~~~~~~~~l~~D~~tL~~y~i~~g~~ihv 83 (122)
T 1t0y_A 7 YDLEITTNATDFPMEKKYPAGMSLNDLKKKLELVVG---TTVDSMRIQLFDGDDQLKGELTDGAKSLKDLGVRDGYRIHA 83 (122)
T ss_dssp EEEEEEESSCCSCEEEEEETTSBHHHHHHHHHHHHC---CCTTTEEEEEECSSSSEEEECCCCSSBTTTTTCCSSEEEEE
T ss_pred EEEEEEECCCCccEEEEeCCCCcHHHHHHHHHHHhC---CCHHHeEEEEecCCCccccccCCCcCCHHHCCCCCCCEEEE
Confidence 46778876553 688999999999999999999999 999999999987 43 48999999999999999999
Q ss_pred EeccCC
Q 023989 73 MLSKSK 78 (274)
Q Consensus 73 ~v~k~k 78 (274)
+...+.
T Consensus 84 vd~~p~ 89 (122)
T 1t0y_A 84 VDVTGG 89 (122)
T ss_dssp EECTTC
T ss_pred EeCCCC
Confidence 986544
No 94
>1wm3_A Ubiquitin-like protein SMT3B; ubiquitin fold, half-open barrel, two helices, protein transport; 1.20A {Homo sapiens} SCOP: d.15.1.1 PDB: 1wm2_A 3uin_B 3uio_B 2ckh_B
Probab=99.39 E-value=1.5e-12 Score=95.14 Aligned_cols=71 Identities=17% Similarity=0.260 Sum_probs=68.1
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCcccccccCCCCeEEEEe
Q 023989 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVML 74 (274)
Q Consensus 1 M~I~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~~p~~~qkLI~~GK~L~D~~tL~d~~I~~~~~I~v~v 74 (274)
|+|+||+.+|+.+.+.|..++++..|+++++++.| ++++.+||+|.|+.|.++.|+++|++++|++|+|++
T Consensus 2 i~lkV~~~~g~~v~~~v~~~t~l~kl~~~y~~~~g---i~~~~~rf~fdG~~l~~~~Tp~~l~medgD~Idv~~ 72 (72)
T 1wm3_A 2 INLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQG---LSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQ 72 (72)
T ss_dssp EEEEEECTTSCEEEEEECTTSCTHHHHHHHHHHHT---CCTTTCEEEETTEECCTTCCTTTTTCCTTEEEEEEC
T ss_pred EEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhC---CCcceEEEEECCEEcCCCCCHHHcCCCCCCEEEEEC
Confidence 68999999999999999999999999999999999 899999999999999999999999999999999874
No 95
>3shq_A UBLCP1; phosphatase, hydrolase; 1.96A {Drosophila melanogaster}
Probab=99.39 E-value=2.9e-13 Score=125.57 Aligned_cols=73 Identities=19% Similarity=0.248 Sum_probs=66.7
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEE---eCCeecCCCCcccccccCCCCeEEEEeccC
Q 023989 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLI---HNGKVLKDETTLADNKVSEDGFLVVMLSKS 77 (274)
Q Consensus 1 M~I~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~~p~~~qkLI---~~GK~L~D~~tL~d~~I~~~~~I~v~v~k~ 77 (274)
|+|+|| ++|+.|.|+|++++||.+||++|++.+| +|+++|||| |+||+|+|+.+|++|+|++|++|+||.+..
T Consensus 6 i~i~Vk-~~g~~~~v~v~~~~Tv~~lK~~I~~~tg---Vpp~~QkLi~~k~~Gk~l~D~~~L~~~~ik~g~~l~L~gs~~ 81 (320)
T 3shq_A 6 VVVIVK-WSGKEYPVDLTDQDTVEVLRHEIFRKTQ---VRPERQKLLNLKYKGKTAADNVKISALELKPNFKLMMVGSTE 81 (320)
T ss_dssp EEEEEE-ETTEEEEEEEETTSBHHHHHHHHHHHHC---CCGGGCEETTCBSSSSBCCTTSBTTSSCCC--CEEEEECCCC
T ss_pred EEEEEE-ECCEEEEEEECCCCcHHHHHHHHHHHHC---cCHHHeEEeecccCCcccCccccHHHcCCCCCCEEEEEccch
Confidence 578999 6899999999999999999999999999 999999999 899999999999999999999999997543
No 96
>1veg_A NEDD8 ultimate buster-1; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=99.38 E-value=4.7e-13 Score=100.58 Aligned_cols=45 Identities=27% Similarity=0.389 Sum_probs=41.3
Q ss_pred hHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCHHHHHHHHHc--C-CCCccc
Q 023989 153 LEQTIQQIMDMGGGTWDKETVTRALQAAYNNPERAVDYLYS--G-IPETAE 200 (274)
Q Consensus 153 ~e~~i~~i~eMG~~~f~r~qv~~ALrAafnNpdrAvEyL~~--G-IP~~~~ 200 (274)
.++.|++||+|| |+|++|++|||+++||++||+|||++ | ||+.++
T Consensus 29 ~ee~I~~Lv~MG---F~~~~A~~AL~~t~gdve~A~e~L~sh~~~ip~~~~ 76 (83)
T 1veg_A 29 SQESINQLVYMG---FDTVVAEAALRVFGGNVQLAAQTLAHHGGSLPPDLQ 76 (83)
T ss_dssp CHHHHHHHHHHS---CCHHHHHHHHHHTTTCHHHHHHHHHHHTSSCCTTSS
T ss_pred CHHHHHHHHHcC---CCHHHHHHHHHHcCCCHHHHHHHHHhCCCCCchhhh
Confidence 589999999999 99999999999999999999999999 6 776543
No 97
>2jy5_A Ubiquilin-1; UBA, alternative splicing, cytoplasm, nucleus, phosphoprotein, proteasome, signaling protein; NMR {Homo sapiens} PDB: 2jy6_B
Probab=99.37 E-value=7.9e-13 Score=91.15 Aligned_cols=42 Identities=24% Similarity=0.382 Sum_probs=39.8
Q ss_pred CCchHHHHHHHHHcCCCCC-CHHHHHHHHHHhcCCHHHHHHHHHcC
Q 023989 150 GNDLEQTIQQIMDMGGGTW-DKETVTRALQAAYNNPERAVDYLYSG 194 (274)
Q Consensus 150 g~~~e~~i~~i~eMG~~~f-~r~qv~~ALrAafnNpdrAvEyL~~G 194 (274)
...|++.|++|++|| | +|+.|++||++++||++||||||++|
T Consensus 9 ~~~~~~~l~~L~~MG---F~~~~~~~~AL~~t~gn~e~A~e~L~~~ 51 (52)
T 2jy5_A 9 EVRFQQQLEQLSAMG---FLNREANLQALIATGGDINAAIERLLGS 51 (52)
T ss_dssp TTTTHHHHHHHHHTT---CCCHHHHHHHHHHHTTCHHHHHHHHTTC
T ss_pred hhHHHHHHHHHHHcC---CCCHHHHHHHHHHhCCCHHHHHHHHHhC
Confidence 457899999999999 9 99999999999999999999999986
No 98
>1wji_A Tudor domain containing protein 3; UBA domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=99.37 E-value=6.7e-13 Score=95.05 Aligned_cols=42 Identities=31% Similarity=0.434 Sum_probs=39.3
Q ss_pred hHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCHHHHHHHHHcCCCC
Q 023989 153 LEQTIQQIMDMGGGTWDKETVTRALQAAYNNPERAVDYLYSGIPE 197 (274)
Q Consensus 153 ~e~~i~~i~eMG~~~f~r~qv~~ALrAafnNpdrAvEyL~~GIP~ 197 (274)
.++.|++|++|| |+|++|++|||+++||++||+|||+++..+
T Consensus 9 ~~~~I~~L~~MG---F~~~~a~~AL~~~~~nve~A~e~L~~~~~~ 50 (63)
T 1wji_A 9 DEKALKHITEMG---FSKEASRQALMDNGNNLEAALNVLLTSNKQ 50 (63)
T ss_dssp CHHHHHHHHTTT---CCHHHHHHHHHHTTSCHHHHHHHHHHHSSC
T ss_pred CHHHHHHHHHcC---CCHHHHHHHHHHhCCCHHHHHHHHHHCCCC
Confidence 488999999999 999999999999999999999999999544
No 99
>2io0_B Small ubiquitin-related modifier 2 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.30A {Homo sapiens} SCOP: d.15.1.1
Probab=99.36 E-value=2.8e-12 Score=98.28 Aligned_cols=75 Identities=16% Similarity=0.256 Sum_probs=71.1
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCcccccccCCCCeEEEEeccCC
Q 023989 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVMLSKSK 78 (274)
Q Consensus 1 M~I~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~~p~~~qkLI~~GK~L~D~~tL~d~~I~~~~~I~v~v~k~k 78 (274)
|+|+||+.+|+.+.+.|.+++++..||++++++.| ++++.+||+|.|+.|.++.|+++|++++|++|.|++....
T Consensus 6 i~ikVk~~~g~~v~~~vk~~t~l~kl~~~y~~~~g---i~~~~~rf~FdG~~l~~~~Tp~dl~medgD~Idv~~~q~g 80 (91)
T 2io0_B 6 INLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQG---LSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTG 80 (91)
T ss_dssp EEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHTT---CCSTTEEEEETTEECCTTCCTTTTTCCTTEEEEEEECCCC
T ss_pred EEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhC---CCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEeccC
Confidence 57899999999999999999999999999999999 8999999999999999999999999999999999987654
No 100
>3a4r_A Nfatc2-interacting protein; ubiquitin fold, coiled coil, cytoplasm, methylation, nucleus, transcription; 1.00A {Mus musculus} PDB: 3a4s_C 3rd2_A
Probab=99.34 E-value=4.9e-12 Score=94.24 Aligned_cols=70 Identities=17% Similarity=0.290 Sum_probs=67.0
Q ss_pred CEEEEEeCCCc-EEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCcccccccCCCCeEEEE
Q 023989 1 MKLTVKTLKGS-HFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVM 73 (274)
Q Consensus 1 M~I~VKtl~g~-~~~ieV~~~~TV~~LK~kI~~~~g~~~~p~~~qkLI~~GK~L~D~~tL~d~~I~~~~~I~v~ 73 (274)
|+|+|++.+|+ .+.+.|..++++..|++.++++.| ++++.+||+|.|+.|.++.|+++|++++|++|+|+
T Consensus 8 i~ikV~~~~g~~~i~~~i~~~t~l~kl~~~y~~~~g---i~~~~~rf~fdG~~l~~~~Tp~~l~medgD~Idv~ 78 (79)
T 3a4r_A 8 LRLRVQGKEKHQMLEISLSPDSPLKVLMSHYEEAMG---LSGHKLSFFFDGTKLSGKELPADLGLESGDLIEVW 78 (79)
T ss_dssp EEEEEECSSTTCEEEEEECTTSCHHHHHHHHHHHHT---CTTCCCEEEETTEECCSCCCHHHHTCCTTCEEEEE
T ss_pred EEEEEEeCCCCEEEEEEECCCChHHHHHHHHHHHhC---CCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEe
Confidence 67999999996 899999999999999999999999 88999999999999999999999999999999986
No 101
>2dna_A Unnamed protein product; ubiquitin associated domain, DSK2 protein, proteasome, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=99.32 E-value=1.6e-12 Score=93.75 Aligned_cols=45 Identities=18% Similarity=0.190 Sum_probs=41.3
Q ss_pred CchHHHHHHHHHcCCCCC-CHHHHHHHHHHhcCCHHHHHHHHHcCCCCc
Q 023989 151 NDLEQTIQQIMDMGGGTW-DKETVTRALQAAYNNPERAVDYLYSGIPET 198 (274)
Q Consensus 151 ~~~e~~i~~i~eMG~~~f-~r~qv~~ALrAafnNpdrAvEyL~~GIP~~ 198 (274)
..|+..|++|++|| | +|+.+++|||++++|++||||||++++++.
T Consensus 17 ~~y~~ql~qL~~MG---F~d~~an~~AL~at~Gnve~Ave~L~~~~~~~ 62 (67)
T 2dna_A 17 VRFSKEMECLQAMG---FVNYNANLQALIATDGDTNAAIYKLKSSQGFS 62 (67)
T ss_dssp HHTHHHHHHHHHHT---CCCHHHHHHHHHHTTSCHHHHHHHHHHCCSSS
T ss_pred HHHHHHHHHHHHcC---CCcHHHHHHHHHHcCCCHHHHHHHHHhCCCcc
Confidence 46889999999999 9 788889999999999999999999998863
No 102
>2d07_B Ubiquitin-like protein SMT3B; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 2rpq_A 2awt_A 2io3_B 2iyd_B 1u4a_A 2k1f_A
Probab=99.31 E-value=6.7e-12 Score=96.39 Aligned_cols=74 Identities=16% Similarity=0.264 Sum_probs=69.5
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCcccccccCCCCeEEEEeccC
Q 023989 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVMLSKS 77 (274)
Q Consensus 1 M~I~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~~p~~~qkLI~~GK~L~D~~tL~d~~I~~~~~I~v~v~k~ 77 (274)
|+|+|++.+|+.+.+.|..++++..|+..++++.| ++++.+||+|.|+.|.++.|+.+|++.++++|+|++...
T Consensus 18 i~ikV~~~~g~~i~~~v~~~t~l~kl~~~y~~~~g---i~~~~~rf~fdG~~l~~~~Tp~dl~medgD~Idv~~~q~ 91 (93)
T 2d07_B 18 INLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQG---LSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQT 91 (93)
T ss_dssp EEEEEECTTSCEEEEEEETTSCHHHHHHHHHHHHT---CCGGGEEEEETTEECCTTCCTTTTTCCTTEEEEEEECC-
T ss_pred EEEEEECCCCCEEEEEEccCCHHHHHHHHHHHHhC---CCccceEEEECCEEcCCCCCHHHcCCCCCCEEEEEeecc
Confidence 57889988999999999999999999999999999 899999999999999999999999999999999998753
No 103
>1wr1_B Ubiquitin-like protein DSK2; UBA domain, UBA-ubiquitin complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=99.31 E-value=1.9e-12 Score=91.11 Aligned_cols=42 Identities=29% Similarity=0.442 Sum_probs=39.4
Q ss_pred CCchHHHHHHHHHcCCCCC-CHHHHHHHHHHhcCCHHHHHHHHHcC
Q 023989 150 GNDLEQTIQQIMDMGGGTW-DKETVTRALQAAYNNPERAVDYLYSG 194 (274)
Q Consensus 150 g~~~e~~i~~i~eMG~~~f-~r~qv~~ALrAafnNpdrAvEyL~~G 194 (274)
.+.|++.|++|++|| | +|+.+++||+++++|++||||||++|
T Consensus 14 e~~~~~qi~~L~~MG---F~d~~~~~~AL~~~~gnve~Ave~L~~~ 56 (58)
T 1wr1_B 14 EERYEHQLRQLNDMG---FFDFDRNVAALRRSGGSVQGALDSLLNG 56 (58)
T ss_dssp HHHTHHHHHHHHHHT---CCCHHHHHHHHHHHTSCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcC---CCcHHHHHHHHHHhCCCHHHHHHHHHhC
Confidence 356899999999999 9 79999999999999999999999998
No 104
>2dak_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5, USP 5, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.31 E-value=8.8e-13 Score=94.40 Aligned_cols=43 Identities=35% Similarity=0.628 Sum_probs=40.4
Q ss_pred hHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCHHHHHHHHHcCCCCc
Q 023989 153 LEQTIQQIMDMGGGTWDKETVTRALQAAYNNPERAVDYLYSGIPET 198 (274)
Q Consensus 153 ~e~~i~~i~eMG~~~f~r~qv~~ALrAafnNpdrAvEyL~~GIP~~ 198 (274)
.++.|++||+|| |+|++|++|||+++||++||+|||+.++++.
T Consensus 9 ~~~~v~~L~~MG---F~~~~a~~AL~~t~~nve~A~e~L~~~~~d~ 51 (63)
T 2dak_A 9 PEDCVTTIVSMG---FSRDQALKALRATNNSLERAVDWIFSHIDDL 51 (63)
T ss_dssp CHHHHHHHHHHT---CCHHHHHHHHHHTTSCSHHHHHHHHHHHHSC
T ss_pred CHHHHHHHHHcC---CCHHHHHHHHHHcCCCHHHHHHHHHhCCCCc
Confidence 588999999999 9999999999999999999999999997753
No 105
>1wz0_A Ubiquitin-like protein SMT3B; SUMO-2, ubiquitin-like molecule, structural genomics, sentrin2, NPPFSA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.29 E-value=8.5e-12 Score=97.83 Aligned_cols=75 Identities=16% Similarity=0.261 Sum_probs=70.8
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCcccccccCCCCeEEEEeccCC
Q 023989 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVMLSKSK 78 (274)
Q Consensus 1 M~I~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~~p~~~qkLI~~GK~L~D~~tL~d~~I~~~~~I~v~v~k~k 78 (274)
|+|+|++.+|+.+.|.|..++++..|+.+++++.| ++++.+||+|.|+.|.++.|+.+|+++++++|+|++....
T Consensus 25 I~IkVk~~~g~~i~~kVk~~t~l~kL~~~y~ek~g---i~~~~~rf~FdG~~l~~~~Tp~dl~medgD~Idv~~~q~G 99 (104)
T 1wz0_A 25 INLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQG---LSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTS 99 (104)
T ss_dssp EEEEEECSSSCEEEEEECTTSCHHHHHHHHHHHHT---CCTTTSCEESSSSBCCTTSCTTTTTCCTTEEEEECCCCCC
T ss_pred EEEEEECCCCCEEEEEEcCCChHHHHHHHHHHHhC---CCcceEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEeccC
Confidence 57899999999999999999999999999999999 8999999999999999999999999999999999987654
No 106
>1z96_A DNA-damage, UBA-domain protein MUD1; ubiquitin, three-helix bundle, protein transport; 1.80A {Schizosaccharomyces pombe} SCOP: a.5.2.1
Probab=99.26 E-value=5.9e-12 Score=81.63 Aligned_cols=39 Identities=31% Similarity=0.492 Sum_probs=36.4
Q ss_pred CchHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCHHHHHHHHH
Q 023989 151 NDLEQTIQQIMDMGGGTWDKETVTRALQAAYNNPERAVDYLY 192 (274)
Q Consensus 151 ~~~e~~i~~i~eMG~~~f~r~qv~~ALrAafnNpdrAvEyL~ 192 (274)
+++++.|++|++|| |+|++|++||+++.+|+++|++||+
T Consensus 2 ~~~~~~i~~L~~mG---f~~~~a~~AL~~~~~n~e~A~~~L~ 40 (40)
T 1z96_A 2 PGLNSKIAQLVSMG---FDPLEAAQALDAANGDLDVAASFLL 40 (40)
T ss_dssp -CHHHHHHHHHHTT---CCHHHHHHHHHHTTTCHHHHHHHHC
T ss_pred chHHHHHHHHHHcC---CCHHHHHHHHHHcCCCHHHHHHHHC
Confidence 46789999999999 9999999999999999999999995
No 107
>2dag_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5 (USP 5), UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.25 E-value=5.9e-12 Score=92.91 Aligned_cols=43 Identities=23% Similarity=0.401 Sum_probs=40.2
Q ss_pred hHHHHHHHHHcCCCCCCHHHHHHHHHHhcC-CHHHHHHHHHcCCCCc
Q 023989 153 LEQTIQQIMDMGGGTWDKETVTRALQAAYN-NPERAVDYLYSGIPET 198 (274)
Q Consensus 153 ~e~~i~~i~eMG~~~f~r~qv~~ALrAafn-NpdrAvEyL~~GIP~~ 198 (274)
.++.|++||+|| |+|++|++|||+++| |+++|+|||+.++++.
T Consensus 9 ~e~~v~~L~~MG---F~~~~a~~AL~~t~n~~ve~A~ewL~~~~~d~ 52 (74)
T 2dag_A 9 DESVIIQLVEMG---FPMDACRKAVYYTGNSGAEAAMNWVMSHMDDP 52 (74)
T ss_dssp CHHHHHHHHHHS---CCHHHHHHHHHHHTSCCHHHHHHHHHHHTTST
T ss_pred CHHHHHHHHHcC---CCHHHHHHHHHHhCCCCHHHHHHHHHhCCCCc
Confidence 478999999999 999999999999997 7999999999998764
No 108
>1wiv_A UBP14, ubiquitin-specific protease 14; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=99.25 E-value=6.4e-12 Score=92.48 Aligned_cols=40 Identities=18% Similarity=0.491 Sum_probs=38.2
Q ss_pred hHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCHHHHHHHHHcCC
Q 023989 153 LEQTIQQIMDMGGGTWDKETVTRALQAAYNNPERAVDYLYSGI 195 (274)
Q Consensus 153 ~e~~i~~i~eMG~~~f~r~qv~~ALrAafnNpdrAvEyL~~GI 195 (274)
.++.|++|++|| |+|++|++|||+++||++||||||+++.
T Consensus 29 ~~~~v~~L~~MG---F~~~~a~~AL~~t~~nve~Ave~L~~~~ 68 (73)
T 1wiv_A 29 DQSSVDTLLSFG---FAEDVARKALKASGGDIEKATDWVFNNS 68 (73)
T ss_dssp CHHHHHHHHHHT---CCHHHHHHHHHHTTSCHHHHHHHHHHSC
T ss_pred CHHHHHHHHHcC---CCHHHHHHHHHHhCCCHHHHHHHHHhCC
Confidence 488999999999 9999999999999999999999999984
No 109
>2crn_A Ubash3A protein; compact three-helix bundle, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=99.25 E-value=3.2e-12 Score=91.78 Aligned_cols=45 Identities=20% Similarity=0.322 Sum_probs=40.8
Q ss_pred CchHHHHHHHHHcCCCCCCHHHHHHHHHHhcC-CHHHHHHHHHcCCCCc
Q 023989 151 NDLEQTIQQIMDMGGGTWDKETVTRALQAAYN-NPERAVDYLYSGIPET 198 (274)
Q Consensus 151 ~~~e~~i~~i~eMG~~~f~r~qv~~ALrAafn-NpdrAvEyL~~GIP~~ 198 (274)
...++.|++|++|| |+|++|++||++++| |+++|+|||+.++++.
T Consensus 7 ~~~e~~v~~L~~MG---F~~~~a~~AL~~t~n~~~e~A~~wL~~h~~d~ 52 (64)
T 2crn_A 7 GSSPSLLEPLLAMG---FPVHTALKALAATGRKTAEEALAWLHDHCNDP 52 (64)
T ss_dssp CCSCSSHHHHHHTS---CCHHHHHHHHHHHTSCCHHHHHHHHHHHSSST
T ss_pred CCCHHHHHHHHHcC---CCHHHHHHHHHHhCCCCHHHHHHHHHhCCCCc
Confidence 34567899999999 999999999999998 9999999999998753
No 110
>2k8h_A Small ubiquitin protein; SUMO, post-translational modifier, signaling protein; NMR {Trypanosoma brucei}
Probab=99.24 E-value=1.3e-11 Score=97.83 Aligned_cols=75 Identities=12% Similarity=0.247 Sum_probs=70.8
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCcccccccCCCCeEEEEeccCC
Q 023989 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVMLSKSK 78 (274)
Q Consensus 1 M~I~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~~p~~~qkLI~~GK~L~D~~tL~d~~I~~~~~I~v~v~k~k 78 (274)
|+|+|++.+|+.+.|.|..++++..||++++++.| ++++.+||+|.|+.|.+++|+.+|+++++++|.|++....
T Consensus 27 I~IkVk~~~g~~i~fkVk~~t~l~kL~~ay~ek~g---i~~~~~rfiFdG~~L~~~~Tp~dl~mEDgD~Idv~~~q~G 101 (110)
T 2k8h_A 27 VAVKVVNADGAEMFFRIKSRTALKKLIDTYCKKQG---ISRNSVRFLFDGTPIDETKTPEELGMEDDDVIDAMVEQTG 101 (110)
T ss_dssp EEEEEEETTSCCEEEEECTTSSHHHHHHHHHHHHT---CCSSSCEEESSSCBCCSSSHHHHHHCSSEEEEEEECCCCC
T ss_pred EEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhC---CCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEcccC
Confidence 67999999999999999999999999999999999 8999999999999999999999999999999999987543
No 111
>2eke_C Ubiquitin-like protein SMT3; UBC9, SUMO binding motif, SBM, ligase/protein binding complex; 1.90A {Saccharomyces cerevisiae} SCOP: d.15.1.1
Probab=99.23 E-value=2.3e-11 Score=95.65 Aligned_cols=73 Identities=11% Similarity=0.200 Sum_probs=68.7
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCcccccccCCCCeEEEEeccC
Q 023989 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVMLSKS 77 (274)
Q Consensus 1 M~I~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~~p~~~qkLI~~GK~L~D~~tL~d~~I~~~~~I~v~v~k~ 77 (274)
|+|+|++ +|+.+.+.|..++++..|+++++++.| ++++.+||+|.|+.|.++.|..+|+++++++|.|++...
T Consensus 32 I~IkV~~-~g~~i~fkIk~tt~l~kL~~ay~ek~g---i~~~~~rF~FdG~rl~~~~Tp~dl~medgD~Idv~~~q~ 104 (106)
T 2eke_C 32 INLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQG---KEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQI 104 (106)
T ss_dssp EEEEEEC-SSCEEEEEEETTSCTHHHHHHHHHHHT---CCGGGEEEEETTEECCTTCCTTTTTCCTTEEEEEEECC-
T ss_pred EEEEEec-CCcEEEEEeCCCCHHHHHHHHHHHHhC---CCcccEEEEECCeEcCCCCCHHHcCCCCCCEEEEEeecc
Confidence 5788999 999999999999999999999999999 889999999999999999999999999999999998753
No 112
>1whc_A RSGI RUH-027, UBA/UBX 33.3 kDa protein; UBA domain, structural genomics, riken structural genomics/proteomics initiative, unknown function; NMR {Mus musculus} SCOP: a.5.2.1
Probab=99.22 E-value=5.7e-12 Score=90.47 Aligned_cols=42 Identities=19% Similarity=0.371 Sum_probs=38.9
Q ss_pred HHHHHHHHHcCCCCCCHHHHHHHHHHhc-CCHHHHHHHHHcCCCCc
Q 023989 154 EQTIQQIMDMGGGTWDKETVTRALQAAY-NNPERAVDYLYSGIPET 198 (274)
Q Consensus 154 e~~i~~i~eMG~~~f~r~qv~~ALrAaf-nNpdrAvEyL~~GIP~~ 198 (274)
++.|++||+|| |+|++|++|||+++ +|+++|+|||+.++++.
T Consensus 10 ~~~v~~L~~MG---F~~~~a~~AL~~t~~~nve~A~ewLl~~~~d~ 52 (64)
T 1whc_A 10 LTALESLIEMG---FPRGRAEKALALTGNQGIEAAMDWLMEHEDDP 52 (64)
T ss_dssp CCHHHHHHTTT---CCHHHHHHHHHHHTSCCHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHcC---CCHHHHHHHHHHhcCCCHHHHHHHHHhCCCCc
Confidence 56899999999 99999999999995 89999999999998764
No 113
>2cpw_A CBL-interacting protein STS-1 variant; ubiquitin associated domain, UBA, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=99.22 E-value=7.3e-12 Score=89.89 Aligned_cols=40 Identities=20% Similarity=0.418 Sum_probs=37.7
Q ss_pred HHHHHHHHHcCCCCCCHHHHHHHHHHhcC-CHHHHHHHHHcCCC
Q 023989 154 EQTIQQIMDMGGGTWDKETVTRALQAAYN-NPERAVDYLYSGIP 196 (274)
Q Consensus 154 e~~i~~i~eMG~~~f~r~qv~~ALrAafn-NpdrAvEyL~~GIP 196 (274)
++.|++||+|| |+|++|++|||+++| |+++|+|||+.++-
T Consensus 20 e~~i~~L~~MG---F~~~~a~~AL~~t~~~nve~A~ewL~~~~~ 60 (64)
T 2cpw_A 20 GSALDVLLSMG---FPRARAQKALASTGGRSVQTACDWLFSHSG 60 (64)
T ss_dssp CCHHHHHHHHT---CCHHHHHHHHHHTTTSCHHHHHHHHHSCCS
T ss_pred HHHHHHHHHcC---CCHHHHHHHHHHcCCCCHHHHHHHHHhCCC
Confidence 57899999999 999999999999998 99999999999864
No 114
>2ekk_A UBA domain from E3 ubiquitin-protein ligase HUWE1; ubiquitin associated domain, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.21 E-value=1.1e-11 Score=83.63 Aligned_cols=38 Identities=37% Similarity=0.597 Sum_probs=35.7
Q ss_pred hHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCHHHHHHHHHcC
Q 023989 153 LEQTIQQIMDMGGGTWDKETVTRALQAAYNNPERAVDYLYSG 194 (274)
Q Consensus 153 ~e~~i~~i~eMG~~~f~r~qv~~ALrAafnNpdrAvEyL~~G 194 (274)
+++.|++|++|| |+|++|++|||++ ||+++|+|||++.
T Consensus 9 ~~~~v~~L~~MG---F~~~~a~~AL~~~-~n~e~A~~~L~~h 46 (47)
T 2ekk_A 9 NQQQLQQLMDMG---FTREHAMEALLNT-STMEQATEYLLTH 46 (47)
T ss_dssp CHHHHHHHHHHH---CCHHHHHHHHHHS-CSHHHHHHHHHTC
T ss_pred CHHHHHHHHHcC---CCHHHHHHHHHHc-CCHHHHHHHHHcC
Confidence 488999999999 9999999999999 6999999999864
No 115
>1wjn_A Tubulin-folding protein TBCE; ubiquitin-like domain, progressive motor neuropathy, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.17 E-value=7.5e-11 Score=90.67 Aligned_cols=73 Identities=25% Similarity=0.246 Sum_probs=62.8
Q ss_pred EEEEEe---CCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCC------ee-c-CCCCcccccccCCCCeE
Q 023989 2 KLTVKT---LKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNG------KV-L-KDETTLADNKVSEDGFL 70 (274)
Q Consensus 2 ~I~VKt---l~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~~p~~~qkLI~~G------K~-L-~D~~tL~d~~I~~~~~I 70 (274)
+|+|+. .+++.+++.+..++||.+||.+|+..+| +++..|||+|.+ .+ | +|+++|.+|+|.+|++|
T Consensus 11 ~l~I~~~~~~~~~~~e~~l~~~~TV~~LK~~i~~~~g---ip~~~q~L~~~~~~~~~~~~~L~~d~~~L~~y~i~~G~~I 87 (97)
T 1wjn_A 11 TLKIKCSNQPERQILEKQLPDSMTVQKVKGLLSRLLK---VPVSELLLSYESSKMPGREIELENDLQPLQFYSVENGDCL 87 (97)
T ss_dssp EEEEEESSCSSSCCEEEEEETTSBHHHHHHHHHTTTT---CCTTTCEEEEECTTSCSCEEECCCSSSBSGGGTCCTTCEE
T ss_pred EEEEEecCCCCCcEEEEECCCCCCHHHHHHHHHHHHC---CChhHeEEEEEcCCCCceeeccCCCcccHhhcCCCCCCEE
Confidence 566764 4678899999999999999999999999 999999999873 22 5 67889999999999999
Q ss_pred EEEeccC
Q 023989 71 VVMLSKS 77 (274)
Q Consensus 71 ~v~v~k~ 77 (274)
||..+.+
T Consensus 88 ~V~d~~p 94 (97)
T 1wjn_A 88 LVRWSGP 94 (97)
T ss_dssp EEECCSS
T ss_pred EEEecCC
Confidence 9987543
No 116
>2dai_A Ubadc1, ubiquitin associated domain containing 1; UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.16 E-value=3.1e-11 Score=90.90 Aligned_cols=43 Identities=23% Similarity=0.393 Sum_probs=40.3
Q ss_pred hHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCHHHHHHHHHcCCCCc
Q 023989 153 LEQTIQQIMDMGGGTWDKETVTRALQAAYNNPERAVDYLYSGIPET 198 (274)
Q Consensus 153 ~e~~i~~i~eMG~~~f~r~qv~~ALrAafnNpdrAvEyL~~GIP~~ 198 (274)
.++.|++||+|| |+|++|++|||+++||+++|+|||+.++.+.
T Consensus 29 ~e~~i~~L~~MG---F~~~~a~~AL~~t~~nve~A~ewL~~~~~d~ 71 (83)
T 2dai_A 29 DEAALRQLTEMG---FPENRATKALQLNHMSVPQAMEWLIEHAEDP 71 (83)
T ss_dssp CHHHHHHHHHHT---CCHHHHHHHHHHTTSCHHHHHHHHHHGGGCS
T ss_pred CHHHHHHHHHcC---CCHHHHHHHHHHhCCCHHHHHHHHHHCCCCc
Confidence 588999999999 9999999999999999999999999997653
No 117
>1vek_A UBP14, ubiquitin-specific protease 14, putative; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=99.14 E-value=4.8e-11 Score=90.06 Aligned_cols=43 Identities=23% Similarity=0.405 Sum_probs=39.8
Q ss_pred hHHHHHHHHHcCCCCCCHHHHHHHHHHhcC-CHHHHHHHHHcCCCCc
Q 023989 153 LEQTIQQIMDMGGGTWDKETVTRALQAAYN-NPERAVDYLYSGIPET 198 (274)
Q Consensus 153 ~e~~i~~i~eMG~~~f~r~qv~~ALrAafn-NpdrAvEyL~~GIP~~ 198 (274)
.++.|++||+|| |+|++|++|||+++| |+++|+|||++++++.
T Consensus 29 ~e~~v~~L~~MG---F~~~~a~~AL~~t~n~n~e~A~ewL~~h~~d~ 72 (84)
T 1vek_A 29 NEEIVAQLVSMG---FSQLHCQKAAINTSNAGVEEAMNWLLSHMDDP 72 (84)
T ss_dssp CHHHHHHHHHHT---CCHHHHHHHHHHTTTCCHHHHHHHHHHHTTCS
T ss_pred CHHHHHHHHHcC---CCHHHHHHHHHHHcCCCHHHHHHHHHhCCCcc
Confidence 488999999999 999999999999985 9999999999998764
No 118
>1wgn_A UBAP1, ubiquitin associated protein; ubiquitin associated protein 1 (UBAP1), UBA domain, structural genomics; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=99.13 E-value=4.5e-11 Score=84.00 Aligned_cols=42 Identities=29% Similarity=0.573 Sum_probs=38.1
Q ss_pred CCCchHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCHHHHHHHHHcC
Q 023989 149 AGNDLEQTIQQIMDMGGGTWDKETVTRALQAAYNNPERAVDYLYSG 194 (274)
Q Consensus 149 ~g~~~e~~i~~i~eMG~~~f~r~qv~~ALrAafnNpdrAvEyL~~G 194 (274)
.+++ ++.|..|++|| |.++|+.+||++..||.|||+|||++-
T Consensus 16 s~se-~e~V~~LvsMG---Fs~~qA~kALKat~~NvErAaDWLFSH 57 (63)
T 1wgn_A 16 SPSE-RQCVETVVNMG---YSYECVLRAMKKKGENIEQILDYLFAH 57 (63)
T ss_dssp CHHH-HHHHHHHHHHH---CCHHHHHHHHHHHCSCHHHHHHHHHHH
T ss_pred Ccch-HHHHHHHHHcC---CCHHHHHHHHHHcCCCHHHHHHHHHhC
Confidence 3444 67899999999 999999999999999999999999976
No 119
>2dah_A Ubiquilin-3; UBA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=99.08 E-value=1.3e-10 Score=80.68 Aligned_cols=41 Identities=24% Similarity=0.382 Sum_probs=37.4
Q ss_pred chHHHHHHHHHcCCCCC-CHHHHHHHHHHhcCCHHHHHHHHHcCC
Q 023989 152 DLEQTIQQIMDMGGGTW-DKETVTRALQAAYNNPERAVDYLYSGI 195 (274)
Q Consensus 152 ~~e~~i~~i~eMG~~~f-~r~qv~~ALrAafnNpdrAvEyL~~GI 195 (274)
.|++.|++|++|| | +|+.+++||+++.+|.+||||||+++.
T Consensus 8 ~~~~~l~~L~~MG---F~d~~~n~~AL~~~~Gdv~~Ave~L~~~~ 49 (54)
T 2dah_A 8 HFQVQLEQLRSMG---FLNREANLQALIATGGDVDAAVEKLRQSS 49 (54)
T ss_dssp SSHHHHHHHHHHT---CCCHHHHHHHHHHHTSCHHHHHHHHHHHS
T ss_pred hHHHHHHHHHHcC---CCcHHHHHHHHHHcCCCHHHHHHHHHhCC
Confidence 5789999999999 9 566689999999999999999999874
No 120
>2lbc_A Ubiquitin carboxyl-terminal hydrolase 13; tandem UBA of USP13; NMR {Homo sapiens}
Probab=99.06 E-value=1.6e-10 Score=93.37 Aligned_cols=41 Identities=34% Similarity=0.562 Sum_probs=39.6
Q ss_pred hHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCHHHHHHHHHcCCC
Q 023989 153 LEQTIQQIMDMGGGTWDKETVTRALQAAYNNPERAVDYLYSGIP 196 (274)
Q Consensus 153 ~e~~i~~i~eMG~~~f~r~qv~~ALrAafnNpdrAvEyL~~GIP 196 (274)
.++.|++|++|| |+|++|++|||+++||++||+|||+++++
T Consensus 78 ~e~~v~~L~~MG---F~~~~a~~AL~~~~~~~e~A~e~L~~~~~ 118 (126)
T 2lbc_A 78 PEEIVAIITSMG---FQRNQAIQALRATNNNLERALDWIFSHPE 118 (126)
T ss_dssp CHHHHHHHHHHT---SCHHHHHHHHHHHTSCHHHHHHHHHTCCS
T ss_pred CHHHHHHHHHcC---CCHHHHHHHHHHcCCCHHHHHHHHHhCCC
Confidence 588999999999 99999999999999999999999999987
No 121
>2cwb_A Chimera of immunoglobulin G binding protein G and ubiquitin-like protein SB132; helical bundle, protein binding; NMR {Streptococcus SP} PDB: 2den_A
Probab=99.04 E-value=2.2e-10 Score=90.13 Aligned_cols=43 Identities=33% Similarity=0.490 Sum_probs=39.8
Q ss_pred CchHHHHHHHHHcCCCCC-CHHHHHHHHHHhcCCHHHHHHHHHcCCC
Q 023989 151 NDLEQTIQQIMDMGGGTW-DKETVTRALQAAYNNPERAVDYLYSGIP 196 (274)
Q Consensus 151 ~~~e~~i~~i~eMG~~~f-~r~qv~~ALrAafnNpdrAvEyL~~GIP 196 (274)
..+++.|++|++|| | +|+++++||+++++|++||||||++|.+
T Consensus 64 ~~~~~qL~qL~eMG---F~d~~~ni~AL~~t~Gdve~AVe~L~~~~~ 107 (108)
T 2cwb_A 64 SQWQPQLQQLRDMG---IQDDELSLRALQATGGDIQAALELIFAGGA 107 (108)
T ss_dssp CTTHHHHHHHHTTT---CCCHHHHHHHHHHHTSCHHHHHHHHHHTSC
T ss_pred cchHHHHHHHHHcC---CCCHHHHHHHHHHhCCCHHHHHHHHHhcCC
Confidence 35789999999999 9 8899999999999999999999999854
No 122
>3kyd_D Small ubiquitin-related modifier 1; SUMO, thioester, adenylation, inhibitor, TETR intermediate, ligase, nucleus, phosphoprotein; HET: VMX; 2.61A {Homo sapiens} SCOP: d.15.1.1
Probab=98.98 E-value=2.5e-09 Score=85.16 Aligned_cols=73 Identities=19% Similarity=0.298 Sum_probs=68.4
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCcccccccCCCCeEEEEecc
Q 023989 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVMLSK 76 (274)
Q Consensus 1 M~I~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~~p~~~qkLI~~GK~L~D~~tL~d~~I~~~~~I~v~v~k 76 (274)
|+|+|+..+|+.+.+.|..++++..|+..++++.| ++...+||+|.|+.|.++.|..++++.+|++|.|++..
T Consensus 41 I~LKV~~qdg~ev~fkIk~tt~L~KLm~aY~er~G---l~~~~irFlFDG~rI~~~~TP~dL~MEDgD~IdV~~~Q 113 (115)
T 3kyd_D 41 IKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQG---VPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQEQ 113 (115)
T ss_dssp EEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHHT---CCTTSEEEEETTEECCTTCCTTTTTCCTTCEEEEEECC
T ss_pred EEEEEEcCCCCEEEEEEccCChHHHHHHHHHHHhC---CChhhEEEEECCeECCCCCCHHHcCCCCCCEEEEEeec
Confidence 46788888899999999999999999999999999 89999999999999999999999999999999999754
No 123
>2dkl_A Trinucleotide repeat containing 6C protein; TNRC6C, KIAA1582 protein, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=98.98 E-value=5.3e-10 Score=84.47 Aligned_cols=38 Identities=29% Similarity=0.460 Sum_probs=37.0
Q ss_pred HHHHHHHHHcCCCCCCHHHHHHHHHHhcCCHHHHHHHHHcC
Q 023989 154 EQTIQQIMDMGGGTWDKETVTRALQAAYNNPERAVDYLYSG 194 (274)
Q Consensus 154 e~~i~~i~eMG~~~f~r~qv~~ALrAafnNpdrAvEyL~~G 194 (274)
++.|++|++|| |+|++|++||++.++|+++|+|||+..
T Consensus 22 ~~~I~qL~~MG---F~~~~a~~AL~~~n~n~e~A~ewL~~h 59 (85)
T 2dkl_A 22 SRLIKQLTDMG---FPREPAEEALKSNNMNLDQAMSALLEK 59 (85)
T ss_dssp HHHHHHHHHHT---CCHHHHHHHHHHTTSCHHHHHHHHHTT
T ss_pred HHHHHHHHHcC---CCHHHHHHHHHHcCCCHHHHHHHHHHC
Confidence 88999999999 999999999999999999999999987
No 124
>1dv0_A DNA repair protein HHR23A; helical bundle, DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: a.5.2.1 PDB: 1f4i_A
Probab=98.92 E-value=2.2e-10 Score=77.23 Aligned_cols=41 Identities=22% Similarity=0.340 Sum_probs=38.7
Q ss_pred chHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCHHHHHHHHHcCC
Q 023989 152 DLEQTIQQIMDMGGGTWDKETVTRALQAAYNNPERAVDYLYSGI 195 (274)
Q Consensus 152 ~~e~~i~~i~eMG~~~f~r~qv~~ALrAafnNpdrAvEyL~~GI 195 (274)
+.++.|++|++|| |+|.+|++||.+..+|.++|++||+++.
T Consensus 3 ~e~eaI~rL~~mG---F~~~~a~~Al~a~~~n~e~A~~~Lf~~~ 43 (47)
T 1dv0_A 3 QEKEAIERLKALG---FPESLVIQAYFACEKNENLAANFLLSQN 43 (47)
T ss_dssp CCHHHHTTTTTTT---CCHHHHHHHHTTTTSCHHHHHHHTTSCC
T ss_pred chHHHHHHHHHcC---CCHHHHHHHHHHcCCCHHHHHHHHHhCc
Confidence 4578999999999 9999999999999999999999999885
No 125
>2ooa_A E3 ubiquitin-protein ligase CBL-B; alpha-helical domain; 1.56A {Homo sapiens} PDB: 2oob_A 2jnh_A 2do6_A
Probab=98.81 E-value=5.9e-09 Score=70.80 Aligned_cols=38 Identities=37% Similarity=0.455 Sum_probs=35.7
Q ss_pred hHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCHHHHHHHHHc
Q 023989 153 LEQTIQQIMDMGGGTWDKETVTRALQAAYNNPERAVDYLYS 193 (274)
Q Consensus 153 ~e~~i~~i~eMG~~~f~r~qv~~ALrAafnNpdrAvEyL~~ 193 (274)
.+..|++||+|| |+|++|++||+.+.||.|-|..+|+.
T Consensus 11 ~~~~Ia~Lm~mG---Fsr~~ai~AL~~a~nnve~AaniLle 48 (52)
T 2ooa_A 11 VDAKIAKLMGEG---YAFEEVKRALEIAQNNVEVARSILRE 48 (52)
T ss_dssp CHHHHHHHHHTT---CCHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHcC---CCHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 468999999999 99999999999999999999999874
No 126
>2d9s_A CBL E3 ubiquitin protein ligase; UBA domain, dimer, protein binding, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=98.76 E-value=1.1e-08 Score=69.75 Aligned_cols=39 Identities=31% Similarity=0.388 Sum_probs=35.9
Q ss_pred hHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCHHHHHHHHHcC
Q 023989 153 LEQTIQQIMDMGGGTWDKETVTRALQAAYNNPERAVDYLYSG 194 (274)
Q Consensus 153 ~e~~i~~i~eMG~~~f~r~qv~~ALrAafnNpdrAvEyL~~G 194 (274)
.|..|..||+|| |+|++|++||+.+.||.|-|..+|+.-
T Consensus 9 ~e~~I~~L~~lG---F~r~~ai~AL~~a~nnve~Aa~iL~ef 47 (53)
T 2d9s_A 9 LSSEIERLMSQG---YSYQDIQKALVIAHNNIEMAKNILREF 47 (53)
T ss_dssp SHHHHHHHHHHT---CCHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHcC---CCHHHHHHHHHHhcCCHHHHHHHHHHh
Confidence 366799999999 999999999999999999999999853
No 127
>4ae4_A Ubiquitin-associated protein 1; protein transport, endosomal sorting, tetherin, VPU, HIV-1, monoubiquitin; HET: NHE; 1.65A {Homo sapiens} PDB: 4ae4_B*
Probab=98.75 E-value=6.3e-09 Score=83.23 Aligned_cols=39 Identities=18% Similarity=0.368 Sum_probs=37.2
Q ss_pred hHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCHHHHHHHHHcC
Q 023989 153 LEQTIQQIMDMGGGTWDKETVTRALQAAYNNPERAVDYLYSG 194 (274)
Q Consensus 153 ~e~~i~~i~eMG~~~f~r~qv~~ALrAafnNpdrAvEyL~~G 194 (274)
+.+.|.+|++|| |++++|+.||+...||.|||||||+++
T Consensus 76 ~~~~v~~L~eMG---F~~~~a~~AL~~~~nd~erAlewL~~~ 114 (118)
T 4ae4_A 76 FLQLMSKFKEMG---FELKDIKEVLLLHNNDQDNALEDLMAR 114 (118)
T ss_dssp HHHHHHHHHHTT---CCHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred CHHHHHHHHHcC---CCHHHHHHHHHHcCCCHHHHHHHHHHh
Confidence 567899999999 999999999999999999999999986
No 128
>3pge_A SUMO-modified proliferating cell nuclear antigen; DNA replication, DNA binding protein; 2.80A {Saccharomyces cerevisiae}
Probab=98.73 E-value=3.4e-08 Score=85.70 Aligned_cols=75 Identities=11% Similarity=0.167 Sum_probs=69.4
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCcccccccCCCCeEEEEeccCCC
Q 023989 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVMLSKSKT 79 (274)
Q Consensus 1 M~I~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~~p~~~qkLI~~GK~L~D~~tL~d~~I~~~~~I~v~v~k~k~ 79 (274)
|+|+|+ .+|+.+.+.|..++++..||+.++++.| ++..++||+|.|+.|.++.|..++++.+|++|.|++.....
T Consensus 30 I~LkV~-~~g~~v~fkIk~~t~l~kL~~ay~er~G---i~~~~~RF~FdG~rI~~~~TP~dL~MEdgD~Idv~~~q~gg 104 (200)
T 3pge_A 30 INLKVS-DGSSEIFFKIKKTTPLRRLMEAFAKRQG---KEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQIGG 104 (200)
T ss_dssp EEEEEE-CSSCEEEEEECTTSCTHHHHHHHHHHHS---SCGGGEEEEETTEECCTTCCTTTTTCCTTEEEEEEECCSCC
T ss_pred EEEEEe-cCCCEEEEEEecCCHHHHHHHHHHHHhC---CChhhEEEEECCEEcCCCCCHHHcCCCCCCEEEEEeccCcC
Confidence 467787 4888999999999999999999999999 99999999999999999999999999999999999877553
No 129
>3tix_A Ubiquitin-like protein SMT3, RNA-induced transcri silencing complex protein TAS3; PIN, rossmann fold, SPOC, alpha-helical hairpin, heterochrom silencing, RITS, RNAI, argonaute; 2.90A {Saccharomyces cerevisiae}
Probab=98.72 E-value=2.1e-08 Score=86.14 Aligned_cols=74 Identities=11% Similarity=0.179 Sum_probs=68.2
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCcccccccCCCCeEEEEeccCC
Q 023989 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVMLSKSK 78 (274)
Q Consensus 1 M~I~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~~p~~~qkLI~~GK~L~D~~tL~d~~I~~~~~I~v~v~k~k 78 (274)
|+|+|+ .+|+.+.+.|..++++..|++.++++.| ++...+||+|.|+.|.+++|..+++++++|+|.|++....
T Consensus 58 InLKVk-~dG~eV~FKIKrtTpL~KLmeAYcERqG---L~~~sIRFLFDGqRI~~ddTPeDLdMEDGDtIDV~leQ~G 131 (207)
T 3tix_A 58 INLKVS-DGSSEIFFKIKKTTPLRRLMEAFAKRQG---KEMDSLTFLYDGIEIQADQTPEDLDMEDNDIIEAHREQIG 131 (207)
T ss_dssp EEEEEE-CSSCEEEEEEETTSCTHHHHHHHHHHTT---CCGGGSCEEETTEECCSSCCTTTTTCCTTEEEEECCCCCT
T ss_pred EEEEEe-cCCCEEEEEEccCChHHHHHHHHHHHhC---CCcccEEEEECCeecCCCCCHHHcCCCCCCEEEEEEeccC
Confidence 457776 4888999999999999999999999999 8999999999999999999999999999999999987654
No 130
>2pjh_A Protein NPL4, nuclear protein localization protein 4 homolog; UFD1, NPL4, AAA, protein binding, transport protein; NMR {Mus musculus}
Probab=98.68 E-value=1.4e-08 Score=75.72 Aligned_cols=69 Identities=14% Similarity=0.204 Sum_probs=57.4
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCee---c--CCCCcccccccCCCCeEEEE
Q 023989 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKV---L--KDETTLADNKVSEDGFLVVM 73 (274)
Q Consensus 1 M~I~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~~p~~~qkLI~~GK~---L--~D~~tL~d~~I~~~~~I~v~ 73 (274)
|.|.||+.+| .+.|+|++++||.+||++|.+..+ ++++.+.|.++-.. | .++.+|+++||++||.|+|.
T Consensus 5 m~lRvrs~~G-~~Ri~v~~~~t~~~L~~~I~~~~~---i~~~~~~l~~~~~p~~~l~~~~~~~l~~lgl~hGd~l~l~ 78 (80)
T 2pjh_A 5 IIIRVQSPDG-VKRITATKRETAATFLKKVAKEFG---FQNNGFSVYINRNKTGEITASSSKSLHLLKIKHGDLLFLF 78 (80)
T ss_dssp CCCEEECSSE-EEECCCCSSCCHHHHHHHHHHHTC---CCTTTCCCCCSCCGGGGSSSCCCCTTTTTCCCTTCCEEC-
T ss_pred EEEEEECCCC-CEEEEcCCcChHHHHHHHHHHHcC---CCCCcceEEecCCCCCcccCCCCCCHHHcCCCCCCEEEEe
Confidence 6788998777 788999999999999999999999 88788776554332 3 47889999999999999874
No 131
>2oo9_A E3 ubiquitin-protein ligase CBL; alpha-helical domain, homodimer; 2.10A {Homo sapiens}
Probab=98.67 E-value=3.6e-08 Score=65.01 Aligned_cols=41 Identities=32% Similarity=0.477 Sum_probs=38.7
Q ss_pred CCchHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCHHHHHHHHHc
Q 023989 150 GNDLEQTIQQIMDMGGGTWDKETVTRALQAAYNNPERAVDYLYS 193 (274)
Q Consensus 150 g~~~e~~i~~i~eMG~~~f~r~qv~~ALrAafnNpdrAvEyL~~ 193 (274)
|+.+|..|..||+|| |+|+.|++||-.+-||.+-|-+.|+.
T Consensus 1 ~~~~e~~I~~L~s~G---f~~~~~~rAL~ia~Nnie~A~nIL~e 41 (46)
T 2oo9_A 1 GSQLSSEIENLMSQG---YSYQDIQKALVIAQNNIEMAKNILRE 41 (46)
T ss_dssp CCHHHHHHHHHHHTT---BCHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred CcchHHHHHHHHHcC---CCHHHHHHHHHHhhccHHHHHHHHHH
Confidence 567899999999999 99999999999999999999999974
No 132
>2juj_A E3 ubiquitin-protein ligase CBL; alpha helix, UBA domain, calcium, cytoplasm, metal- binding, phosphorylation, proto-oncogene, SH2 domain; NMR {Homo sapiens}
Probab=98.58 E-value=6.5e-08 Score=66.16 Aligned_cols=40 Identities=30% Similarity=0.384 Sum_probs=37.5
Q ss_pred chHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCHHHHHHHHHcC
Q 023989 152 DLEQTIQQIMDMGGGTWDKETVTRALQAAYNNPERAVDYLYSG 194 (274)
Q Consensus 152 ~~e~~i~~i~eMG~~~f~r~qv~~ALrAafnNpdrAvEyL~~G 194 (274)
..|..|..||+|| |+|+.|++||+.+-||.+-|-..|+.-
T Consensus 6 p~e~~Ia~L~smG---fsr~da~~AL~ia~Ndv~~AtNiLlEf 45 (56)
T 2juj_A 6 QLSSEIENLMSQG---YSYQDIQKALVIAQNNIEMAKNILREF 45 (56)
T ss_dssp HHHHHHHHHHTTT---CCHHHHHHHHHHTTTCSHHHHHHHHHS
T ss_pred CChHHHHHHHHcC---CCHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 3578999999999 999999999999999999999999865
No 133
>3goe_A DNA repair protein RAD60; SUMO-like domain, sumoylation, SUMO, genome stability, DNA damage, DNA recombination, nucleus; HET: DNA; 0.97A {Schizosaccharomyces pombe} PDB: 3rcz_A*
Probab=98.57 E-value=3.8e-07 Score=67.32 Aligned_cols=70 Identities=14% Similarity=0.181 Sum_probs=65.1
Q ss_pred EEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCC-CeEEEeCCeecCCCCcccccccCCCCeEEEEe
Q 023989 2 KLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCG-QQLLIHNGKVLKDETTLADNKVSEDGFLVVML 74 (274)
Q Consensus 2 ~I~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~~p~~-~qkLI~~GK~L~D~~tL~d~~I~~~~~I~v~v 74 (274)
.+.+|..+...+.+.|.++.+|.+|-+....+.| ++.+ .++|+|.|..|+.+.++.+|++.+++.|-||+
T Consensus 11 ~~~~~~~~~~dl~f~I~~~t~v~kLi~ayc~~~~---I~~~~~IrllFDGdRLdp~~tp~DlemeD~D~IDvmL 81 (82)
T 3goe_A 11 TLLLRSSKSEDLRLSIPVDFTVKDLIKRYCTEVK---ISFHERIRLEFEGEWLDPNDQVQSTELEDEDQVSVVL 81 (82)
T ss_dssp EEEEEESSSCCEEEEEETTSBHHHHHHHHHHHHT---CCCCTTCEEEETTEECCTTSBGGGSSCCTTCEEEEEC
T ss_pred HHhhhccCCCCeEEEecCCCCHHHHHHHHHHHcC---CCcCceEEEEEcCcccCccCChhhhCCcCCceeeeee
Confidence 4567777777899999999999999999999999 9999 99999999999999999999999999999986
No 134
>3k9o_A Ubiquitin-conjugating enzyme E2 K; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 3k9p_A 1yla_A 2o25_A
Probab=98.49 E-value=9.7e-08 Score=82.73 Aligned_cols=43 Identities=28% Similarity=0.445 Sum_probs=40.1
Q ss_pred CCCCchHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCHHHHHHHHHc
Q 023989 148 VAGNDLEQTIQQIMDMGGGTWDKETVTRALQAAYNNPERAVDYLYS 193 (274)
Q Consensus 148 ~~g~~~e~~i~~i~eMG~~~f~r~qv~~ALrAafnNpdrAvEyL~~ 193 (274)
..+.++++.|++|++|| |+|++|+.||+...+|.++|+|||++
T Consensus 158 ~~~~~~eekV~~l~~MG---f~~~~a~~AL~~~~wd~~~A~e~L~~ 200 (201)
T 3k9o_A 158 VSSPEYTKKIENLCAMG---FDRNAVIVALSSKSWDVETATELLLS 200 (201)
T ss_dssp CCCHHHHHHHHHHHTTT---CCHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred cccchhHHHHHHHHHcC---CCHHHHHHHHHHcCCCHHHHHHHHhc
Confidence 34567899999999999 99999999999999999999999985
No 135
>2jxx_A Nfatc2-interacting protein; nuclear factor of activated T-cells, cytoplasmic 2- interacting protein, ubiquitin like homologue; NMR {Homo sapiens}
Probab=98.46 E-value=7.4e-07 Score=68.77 Aligned_cols=70 Identities=14% Similarity=0.244 Sum_probs=63.7
Q ss_pred CEEEEEeCCCc-EEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCcccccccCCCCeEEEE
Q 023989 1 MKLTVKTLKGS-HFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVM 73 (274)
Q Consensus 1 M~I~VKtl~g~-~~~ieV~~~~TV~~LK~kI~~~~g~~~~p~~~qkLI~~GK~L~D~~tL~d~~I~~~~~I~v~ 73 (274)
++|+|+.-+|. .+.+.|..+.++..|....+++.| ++.+..|++|.|..|..+.|..++++++|+.|.|+
T Consensus 26 I~LkV~~~dg~~~v~fkIk~~t~l~kLm~aY~~~~g---~~~~~vrF~FDG~rI~~~~TP~dLdMEDgD~IDv~ 96 (97)
T 2jxx_A 26 LQLRVQGKEKHQTLEVSLSRDSPLKTLMSHYEEAMG---LSGRKLSFFFDGTKLSGRELPADLGMESGDLIEVW 96 (97)
T ss_dssp EEEEEEESSSSCEEEEEEETTSCHHHHHHHHHHHTT---CSSSCCEEEETTEECCSCSCHHHHTCCTTEEEEEE
T ss_pred EEEEEEcCCCCEEEEEEECCCChHHHHHHHHHHHHC---CCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEe
Confidence 35677777774 788999999999999999999999 88899999999999999999999999999999886
No 136
>1wj7_A Hypothetical protein (RSGI RUH-015); UBA domain, ubiquitin associated domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.5.2.1
Probab=98.44 E-value=2.7e-07 Score=71.75 Aligned_cols=44 Identities=27% Similarity=0.579 Sum_probs=41.5
Q ss_pred CchHHHHHHHHHc-CCCCCCHHHHHHHHHHhcCCHHHHHHHHHcCCCC
Q 023989 151 NDLEQTIQQIMDM-GGGTWDKETVTRALQAAYNNPERAVDYLYSGIPE 197 (274)
Q Consensus 151 ~~~e~~i~~i~eM-G~~~f~r~qv~~ALrAafnNpdrAvEyL~~GIP~ 197 (274)
.++++.|..||+| | |++++|+.||.-+.++.++|++||+.|.++
T Consensus 37 ~d~eekVk~L~EmtG---~seeeAr~AL~~~ngDl~~AI~~Lleg~~~ 81 (104)
T 1wj7_A 37 ADFEEKVKQLIDITG---KNQDECVIALHDCNGDVNRAINVLLEGNPD 81 (104)
T ss_dssp HHHHHHHHHHHHHTC---CCHHHHHHHHHHHTSCHHHHHHHHHTCSSS
T ss_pred ccHHHHHHHHHHhhC---CCHHHHHHHHHHcCCCHHHHHHHHHhCCCc
Confidence 4578999999999 9 999999999999999999999999999874
No 137
>3v7o_A Minor nucleoprotein VP30; ssgcid, seattle structural genomics center for infectious disease, SMT, transcription; 2.25A {Reston ebolavirus}
Probab=98.41 E-value=3e-08 Score=86.34 Aligned_cols=74 Identities=11% Similarity=0.181 Sum_probs=0.0
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCcccccccCCCCeEEEEeccCC
Q 023989 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVMLSKSK 78 (274)
Q Consensus 1 M~I~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~~p~~~qkLI~~GK~L~D~~tL~d~~I~~~~~I~v~v~k~k 78 (274)
|+|+| ..+|+.+.+.|..++.+..|++.++++.| ++++.+|++|.|+.|.+++|.+++++++||+|.|+.....
T Consensus 22 InLKV-~qdGseV~FKIKrtTpL~KLM~AYcERqG---Ls~~siRFLFDGqRI~dddTPadL~MEDGDtIDV~leQ~G 95 (227)
T 3v7o_A 22 INLKV-SDGSSEIFFKIKKTTPLRRLMEAFAKRQG---KEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQIG 95 (227)
T ss_dssp ------------------------------------------------------------------------------
T ss_pred EEEEE-eCCCCEEEEEEccCChHHHHHHHHHHHhC---CCccceEEEECCEecCCCCCHHHcCCCCCCEEEEEecccC
Confidence 56777 66888899999999999999999999999 8999999999999999999999999999999999976644
No 138
>4ae4_A Ubiquitin-associated protein 1; protein transport, endosomal sorting, tetherin, VPU, HIV-1, monoubiquitin; HET: NHE; 1.65A {Homo sapiens} PDB: 4ae4_B*
Probab=98.37 E-value=3.6e-07 Score=72.95 Aligned_cols=38 Identities=37% Similarity=0.632 Sum_probs=36.2
Q ss_pred hHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCHHHHHHHHHc
Q 023989 153 LEQTIQQIMDMGGGTWDKETVTRALQAAYNNPERAVDYLYS 193 (274)
Q Consensus 153 ~e~~i~~i~eMG~~~f~r~qv~~ALrAafnNpdrAvEyL~~ 193 (274)
-.+.|++|++|| |+++.|++||++..||+++|+|||+.
T Consensus 8 e~~~v~~l~~MG---Fp~~~~~kAl~~~g~~~e~amewL~~ 45 (118)
T 4ae4_A 8 ERQCVETVVNMG---YSYECVLRAMKAAGANIEQILDYLFA 45 (118)
T ss_dssp HHHHHHHHHHTT---CCHHHHHHHHHHHCSCHHHHHHHHHH
T ss_pred HHHHHHHHHHcC---CCHHHHHHHHHHHCcCHHHHHHHHHH
Confidence 468999999999 99999999999999999999999986
No 139
>2cp8_A NEXT to BRCA1 gene 1 protein; UBA domain, structural genomics, human, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=98.30 E-value=6.9e-07 Score=61.51 Aligned_cols=42 Identities=19% Similarity=0.270 Sum_probs=38.7
Q ss_pred CCchHHHHHHHHHcCCCCC-CHHHHHHHHHHhcCCHHHHHHHHHcC
Q 023989 150 GNDLEQTIQQIMDMGGGTW-DKETVTRALQAAYNNPERAVDYLYSG 194 (274)
Q Consensus 150 g~~~e~~i~~i~eMG~~~f-~r~qv~~ALrAafnNpdrAvEyL~~G 194 (274)
.+.|...+++|.||| | +++..++|||...+|.++||++|+.+
T Consensus 6 ee~~a~~L~~L~eMG---F~D~~~N~~aL~~~~gnv~~aI~~Ll~~ 48 (54)
T 2cp8_A 6 SGQTAALMAHLFEMG---FCDRQLNLRLLKKHNYNILQVVTELLQL 48 (54)
T ss_dssp CTTHHHHHHHHHHHT---CCCHHHHHHHHTTTTTCHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHcC---CCcHHHHHHHHHHcCCCHHHHHHHHHhc
Confidence 355778999999999 9 99999999999999999999999975
No 140
>2l76_A Nfatc2-interacting protein; ubiquitin-like domain, structural genomics, PSI-biology, Pro structure initiative; NMR {Homo sapiens}
Probab=98.29 E-value=3.9e-06 Score=64.27 Aligned_cols=72 Identities=13% Similarity=0.197 Sum_probs=66.8
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCcccccccCCCCeEEEEecc
Q 023989 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVMLSK 76 (274)
Q Consensus 1 M~I~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~~p~~~qkLI~~GK~L~D~~tL~d~~I~~~~~I~v~v~k 76 (274)
+.|+|+. +|..+.+.|..++..+.|.+..+++.| +.++..|++|.|..+.++.|-.++++.+++.|-|++.+
T Consensus 22 IniKV~~-~g~ev~FkIK~tt~l~KL~~aYc~r~g---v~~~sirFlfDG~rI~~~~TP~~L~meD~DiID~~~~~ 93 (95)
T 2l76_A 22 FPLKIRC-RADLVRLPLRMSEPLQSVVDHMATHLG---VSPSRILLLFGETELSPTATPRTLKLGVADIIDCVVLT 93 (95)
T ss_dssp EEEEEEC-SSSEEEEEECSSSCTHHHHHHHHHHHT---SCGGGEEEEETTEECCTTSCHHHHTCCSSCEEEEEECC
T ss_pred EEEEEEc-CCcEEEEEEecCChHHHHHHHHHhhcC---CChhhEEEEECCcCCCCCCCHhHcCCCCCCEEEEEEec
Confidence 4677884 788899999999999999999999999 88999999999999999999999999999999999865
No 141
>2lbc_A Ubiquitin carboxyl-terminal hydrolase 13; tandem UBA of USP13; NMR {Homo sapiens}
Probab=98.25 E-value=5e-07 Score=72.68 Aligned_cols=41 Identities=24% Similarity=0.410 Sum_probs=37.7
Q ss_pred HHHHHHHHHcCCCCCCHHHHHHHHHHhcC-CHHHHHHHHHcCCCC
Q 023989 154 EQTIQQIMDMGGGTWDKETVTRALQAAYN-NPERAVDYLYSGIPE 197 (274)
Q Consensus 154 e~~i~~i~eMG~~~f~r~qv~~ALrAafn-NpdrAvEyL~~GIP~ 197 (274)
++.|++|++|| |+++.|++|||+..| |.++|++||+...++
T Consensus 4 ~~~l~~L~~MG---F~~~~a~~AL~~t~n~~~e~A~~wL~~~~~d 45 (126)
T 2lbc_A 4 ESSVMQLAEMG---FPLEACRKAVYFTGNMGAEVAFNWIIVHMEE 45 (126)
T ss_dssp THHHHHHHTTS---SCCHHHHHHHHHHTSCCHHHHHHHHHHGGGC
T ss_pred HHHHHHHHHcC---CCHHHHHHHHHHcCCCCHHHHHHHHHHhccc
Confidence 57899999999 999999999999988 899999999998654
No 142
>2qsf_X RAD23, UV excision repair protein RAD23; alpha-beta structure, beta hairpin, transglutaminase fold, DNA-damage recognition, DNA repair; HET: DNA; 2.35A {Saccharomyces cerevisiae} PDB: 2qsg_X* 2qsh_X* 1x3z_B* 1x3w_B* 3esw_B*
Probab=98.18 E-value=1.2e-06 Score=74.05 Aligned_cols=42 Identities=24% Similarity=0.455 Sum_probs=38.8
Q ss_pred CCchHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCHHHHHHHHHcC
Q 023989 150 GNDLEQTIQQIMDMGGGTWDKETVTRALQAAYNNPERAVDYLYSG 194 (274)
Q Consensus 150 g~~~e~~i~~i~eMG~~~f~r~qv~~ALrAafnNpdrAvEyL~~G 194 (274)
.++.+++|++|++|| |+|+.|++||.++.+|.+.|++||+.+
T Consensus 127 tpee~eaI~rL~~mG---F~r~~viqA~~ac~knee~Aan~L~~~ 168 (171)
T 2qsf_X 127 TPEDDQAISRLCELG---FERDLVIQVYFACDKNEEAAANILFSD 168 (171)
T ss_dssp CHHHHHHHHHHHTTT---CCHHHHHHHHHHTTTCHHHHHHHHTTC
T ss_pred CccHHHHHHHHHHcC---CCHHHHHHHHHHcCCCHHHHHHHHHhc
Confidence 345678899999999 999999999999999999999999976
No 143
>3uf8_A Ubiquitin-like protein SMT3, peptidyl-prolyl CIS- isomerase; ssgcid, seattle structural genomics center for in disease; HET: FK5; 1.50A {Burkholderia pseudomallei} PDB: 4ggq_C* 3vaw_A* 3uqa_A* 4g50_A* 4fn2_A* 3uqb_A* 4giv_A* 1euv_B 3v60_A 3v61_A 3v62_A*
Probab=98.16 E-value=4.9e-06 Score=72.39 Aligned_cols=73 Identities=11% Similarity=0.184 Sum_probs=67.1
Q ss_pred EEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCcccccccCCCCeEEEEeccCC
Q 023989 2 KLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVMLSKSK 78 (274)
Q Consensus 2 ~I~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~~p~~~qkLI~~GK~L~D~~tL~d~~I~~~~~I~v~v~k~k 78 (274)
+|+|+. +++.+.+.|..++++..||+.++++.| ++.+++||+|.|+.+.+++|..++.+.+++.|.++.....
T Consensus 23 ~ikv~~-~~~~v~~~i~~~~~l~kl~~~y~~~~g---~~~~~~~f~fdG~~i~~~~Tpk~L~~ed~d~I~~~~eq~G 95 (209)
T 3uf8_A 23 NLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQG---KEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQIG 95 (209)
T ss_dssp EEEEEC-SSCEEEEEEETTSCTHHHHHHHHHHHT---CCGGGCEEEETTEECCTTCCTTTTTCCTTEEEEEECSCTT
T ss_pred EEEEEc-CCCEEEEEEeeCCHHHHHHHHHHHhhC---CChheEEEEECCEeccCCCChHHhhhcccccchhhccccc
Confidence 567776 677888999999999999999999999 9999999999999999999999999999999999977655
No 144
>4efo_A Serine/threonine-protein kinase TBK1; ubiquitin like domain, transferase; 1.77A {Homo sapiens}
Probab=98.13 E-value=1.1e-05 Score=61.82 Aligned_cols=68 Identities=15% Similarity=0.148 Sum_probs=51.3
Q ss_pred EEEEeC-CCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeec--CCCCcccccccCCC-CeEEEE
Q 023989 3 LTVKTL-KGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVL--KDETTLADNKVSED-GFLVVM 73 (274)
Q Consensus 3 I~VKtl-~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~~p~~~qkLI~~GK~L--~D~~tL~d~~I~~~-~~I~v~ 73 (274)
|+|=.+ ++..+.|.|.+++||..||++|++++| +++++|+|||.||.| +.++....|--... .-|+++
T Consensus 15 vHVf~~~~a~~h~v~I~~~etv~~~ke~V~eqTg---Ip~~~Q~LL~eg~~l~l~p~~~a~~~p~Tt~~~Pl~L~ 86 (94)
T 4efo_A 15 IHVFSLQQMTAHKIYIHSYNTATIFHELVYKQTK---IISSNQELIYEGRRLVLEPGRLAQHFPKTTEENPIFVV 86 (94)
T ss_dssp EEEEETTTTEEEEEEEETTCBHHHHHHHHHHHHC---CCGGGEEEEETTEEECCCTTCBGGGSCCCBTTBCEEEE
T ss_pred EEEEEcccceEEEEEeccchHHHHHHHHHHHHhC---CCHHHHHHHhCCCccccCCCCccccCCCCCCCCCEEEE
Confidence 444444 456788999999999999999999999 999999999999875 45556666644333 344443
No 145
>2cos_A Serine/threonine protein kinase LATS2; UBA domain, structure genomics, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=98.02 E-value=6.2e-06 Score=56.33 Aligned_cols=38 Identities=29% Similarity=0.442 Sum_probs=34.8
Q ss_pred chHHHHHHHHHcCCCCCCHHHHHHHHHHhcC-CHHHHHHHHH
Q 023989 152 DLEQTIQQIMDMGGGTWDKETVTRALQAAYN-NPERAVDYLY 192 (274)
Q Consensus 152 ~~e~~i~~i~eMG~~~f~r~qv~~ALrAafn-NpdrAvEyL~ 192 (274)
..-++++.|++|| |+++.|++||+..-| ..+-|+|||.
T Consensus 8 vn~qmlq~L~eMG---Fd~erae~Alk~Tg~~Gle~AmewL~ 46 (54)
T 2cos_A 8 VNRQMLQELVNAG---CDQEMAGRALKQTGSRSIEAALEYIS 46 (54)
T ss_dssp CCHHHHHHHHHHH---CCHHHHHHHHHHHTSCCHHHHHHHHH
T ss_pred hHHHHHHHHHHcC---CCHHHHHHHHHHhCcccHHHHHHHHH
Confidence 3467899999999 999999999999988 7999999986
No 146
>3ix6_A TS, tsase, thymidylate synthase; niaid, ssgcid, seattle structural center for infectious DISE brucellosis, orchitis, epididymitis, mastitis; 2.20A {Brucella melitensis}
Probab=97.96 E-value=1.1e-06 Score=82.40 Aligned_cols=73 Identities=11% Similarity=0.200 Sum_probs=0.0
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCcccccccCCCCeEEEEeccC
Q 023989 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVMLSKS 77 (274)
Q Consensus 1 M~I~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~~p~~~qkLI~~GK~L~D~~tL~d~~I~~~~~I~v~v~k~ 77 (274)
++|+|+. +|+.+.+.|..++++..|++.++++.| ++.+.+|++|.|+.|.++.|.+++++++||+|.|+....
T Consensus 22 I~LKV~~-~g~~v~FkIk~~t~l~kLm~aY~~r~G---~~~~~~rFlFdG~rI~~~~TP~~L~MEDgD~Idv~~~Q~ 94 (360)
T 3ix6_A 22 INLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQG---KEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQI 94 (360)
T ss_dssp -----------------------------------------------------------------------------
T ss_pred EEEEEec-CCcEEEEEEecCChHHHHHHHHHHHhC---CCcceEEEEECCeECCCCCChHHcCCCccchhhhhhccC
Confidence 3567776 677788999999999999999999999 889999999999999999999999999999999997643
No 147
>2bps_A YUKD protein; ubiquitin-like protein, ubiquitin; 2.7A {Bacillus subtilis}
Probab=97.92 E-value=1.7e-05 Score=59.09 Aligned_cols=72 Identities=21% Similarity=0.277 Sum_probs=59.7
Q ss_pred EEEEEe--CCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCC--CCeEEEeCCeecCCCCcccccccCCCCeEEEE
Q 023989 2 KLTVKT--LKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPC--GQQLLIHNGKVLKDETTLADNKVSEDGFLVVM 73 (274)
Q Consensus 2 ~I~VKt--l~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~~p~--~~qkLI~~GK~L~D~~tL~d~~I~~~~~I~v~ 73 (274)
+|+|.. ..++.|.|+|+...||+.|++.+.+.++.+..+. -..|+.-+|.+|.+++.|.+|+|.+||.|.+.
T Consensus 6 ~ITidl~~y~~~~~DLRIP~~~tvK~Li~~l~ea~~l~~~~~~~~~irv~NK~~~L~~~~~L~d~~ItnGD~Leil 81 (81)
T 2bps_A 6 DITIDLKHYNGSVFDLRLSDYHPVKKVIDIAWQAQSVSMPPREGHWIRVVNKDKVFSGECKLSDCGITNGDRLEIL 81 (81)
T ss_dssp EEEEECTTTTCCEEEEEEETTSBTTHHHHHHHHHSCCCSCCCTTCEEEEGGGTEEEETTSBTGGGTCCTTCEEEEC
T ss_pred EEEEEeeccCCceEEEECCCchhHHHHHHHHHHHhCCCcCCCCCCEEEEecCCEEEcCCCEEeeCCcCCCCEEEEC
Confidence 566664 5789999999999999999999999998441112 24688889999999999999999999999763
No 148
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A
Probab=97.91 E-value=2.5e-06 Score=80.33 Aligned_cols=41 Identities=22% Similarity=0.355 Sum_probs=38.8
Q ss_pred CchHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCHHHHHHHHHcC
Q 023989 151 NDLEQTIQQIMDMGGGTWDKETVTRALQAAYNNPERAVDYLYSG 194 (274)
Q Consensus 151 ~~~e~~i~~i~eMG~~~f~r~qv~~ALrAafnNpdrAvEyL~~G 194 (274)
++.++.|++|++|| |+|++|++||+++.+|.+||++||+++
T Consensus 323 ~ee~eaI~rL~~mG---F~~~~a~~al~a~~~n~e~A~~~L~~~ 363 (368)
T 1oqy_A 323 PQEKEAIERLKALG---FPESLVIQAYFACEKNENLAANFLLSQ 363 (368)
T ss_dssp TTTHHHHHHHHHHT---CCSHHHHHHTSSSSSCSSHHHHHHHHH
T ss_pred CcCHHHHHHHHHcC---CCHHHHHHHHHHcCCCHHHHHHHHhhC
Confidence 45788999999999 999999999999999999999999986
No 149
>2kc2_A Talin-1, F1; FERM, adhesion, cell membrane, cell projection, cytoplasm, cytoskeleton, membrane, phosphoprotein, structural protein; NMR {Mus musculus}
Probab=97.81 E-value=3.5e-05 Score=62.22 Aligned_cols=69 Identities=26% Similarity=0.237 Sum_probs=56.7
Q ss_pred EEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCC-------------------------------------Ce
Q 023989 2 KLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCG-------------------------------------QQ 44 (274)
Q Consensus 2 ~I~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~~p~~-------------------------------------~q 44 (274)
.|+|+.++|...++.|+.+.||.+++..|+.+.| +... .+
T Consensus 13 ~LkV~llDg~~ktl~VD~S~~V~~lv~~Ic~kig---I~n~~ey~L~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~k~ 89 (128)
T 2kc2_A 13 PLKIRMLDGTVKTIMVDDSKTVTDMLMTICARIG---ITNHDEYSLVRELMEEKKDEGTGTLRKDKTLLRDEKKMEKLKQ 89 (128)
T ss_dssp EEEEECTTSCEEEEEEEECSSHHHHHHHHHHHHT---CCCCSSEEEEEECCCCCCCCCSSCCSSSSSCSCCSCCSCSSCC
T ss_pred cEEEEcCCCCEEEEEeCCCcCHHHHHHHHHHHhC---CCCcccccccccccccccccCchhhccccccccchhHHHHHHH
Confidence 3889999999999999999999999999999999 5422 34
Q ss_pred EEEe--CCeecCCCCcccccccCCCCeEEEE
Q 023989 45 LLIH--NGKVLKDETTLADNKVSEDGFLVVM 73 (274)
Q Consensus 45 kLI~--~GK~L~D~~tL~d~~I~~~~~I~v~ 73 (274)
||-. .+..|+++++|.++||.++++|.+-
T Consensus 90 kL~~dd~~~WLD~srtL~EQGI~e~~tllLR 120 (128)
T 2kc2_A 90 KLHTDDELNWLDHGRTLREQGVEEHETLLLR 120 (128)
T ss_dssp SCCCSSSEEEECSSSCHHHHTCCTTSEEEEE
T ss_pred HhcccCCCCcccCCCcHHHcCCCCCCEEEEE
Confidence 4422 2367888999999999999996543
No 150
>2al3_A TUG long isoform; TUG UBL1 insulin, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: d.15.1.2
Probab=97.80 E-value=9.5e-05 Score=56.02 Aligned_cols=75 Identities=15% Similarity=0.157 Sum_probs=69.1
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCcccccccCCCCeEEEEeccCC
Q 023989 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVMLSKSK 78 (274)
Q Consensus 1 M~I~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~~p~~~qkLI~~GK~L~D~~tL~d~~I~~~~~I~v~v~k~k 78 (274)
|.|+|-..+++.+.|.|.++.++.++-+...+++| +.+++..|.|++|.|+-+..+.-.||-+|..|-++.+.+.
T Consensus 10 m~v~Vl~~n~rr~~VKvtp~t~L~~VL~eaC~K~g---l~~~~~~Lkh~~k~lDLSlpfRlsgLpnnAkLELv~~s~s 84 (90)
T 2al3_A 10 SAVSVLAPNGRRHTVKVTPSTVLLQVLEDTCRRQD---FNPSEYDLKFQRTVLDLSLQWRFANLPNNAKLEMVPVSRS 84 (90)
T ss_dssp CCEEEECTTSCEEEECCCTTSBHHHHHHHHHHHTT---CCGGGCEEEETTEEESSSCBHHHHCCCSSCEEEEECSSSC
T ss_pred cEEEEEcCCCcEEEEEECCCCCHHHHHHHHHHHhC---CChhhCeEEeCCEeccccceeEecCCCCCCEEEEEEccCC
Confidence 67899989999999999999999999999999999 8889999999999999999999999999999999866543
No 151
>4da1_A Protein phosphatase 1K, mitochondrial; metal-ION-assisted catalysis, dehydrogenase phosphatase, hydrolase; 2.38A {Homo sapiens} PDB: 3qht_A 1l2n_A
Probab=97.77 E-value=3.4e-06 Score=79.51 Aligned_cols=73 Identities=10% Similarity=0.175 Sum_probs=0.0
Q ss_pred EEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCcccccccCCCCeEEEEeccCC
Q 023989 2 KLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVMLSKSK 78 (274)
Q Consensus 2 ~I~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~~p~~~qkLI~~GK~L~D~~tL~d~~I~~~~~I~v~v~k~k 78 (274)
.|+|+. ++..+.+.|..++++..||+.++++.| ++..+++++|.|+.|.+++|.+++++++|++|.+++....
T Consensus 32 ~lkv~~-~~~~~~~~i~~~~~~~~l~~~y~~~~g---~~~~~~~f~f~G~~i~~~~Tp~~l~med~d~i~~~~~q~g 104 (389)
T 4da1_A 32 NLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQG---KEMDSLRFLYDGIRIQADQAPEDLDMEDNDIIEAHREQIG 104 (389)
T ss_dssp -----------------------------------------------------------------------------
T ss_pred EEEEec-CCcEEEEEECCCChHHHHHHHHHHHhC---CCcceEEEEECCEEcCCCCCHHHcCCCCCCEeeeeecccc
Confidence 466665 667778999999999999999999999 8999999999999999999999999999999999987654
No 152
>2f4m_B UV excision repair protein RAD23 homolog B; glycoproteins, ubiquitin-dependent protein degradation, NUCL excision repair, peptide:N-glycanase; 1.85A {Mus musculus} SCOP: a.189.1.1 PDB: 2f4o_B*
Probab=97.70 E-value=1.8e-05 Score=55.89 Aligned_cols=20 Identities=30% Similarity=0.328 Sum_probs=18.5
Q ss_pred CchHHhhccHHHHHHHHHHH
Q 023989 250 GSLDFLRNNQQVWSLLCCQL 269 (274)
Q Consensus 250 ~~l~~Lr~~pqf~~lRq~~~ 269 (274)
++|+|||++|||++||++|.
T Consensus 2 ~~l~~Lr~~Pqf~~lR~~vq 21 (61)
T 2f4m_B 2 HPLEFLRNQPQFQQMRQIIQ 21 (61)
T ss_dssp CGGGGGTTCHHHHHHHHHHH
T ss_pred chHHHHHcChHHHHHHHHHH
Confidence 57999999999999999985
No 153
>3e46_A Ubiquitin-conjugating enzyme E2-25 kDa; huntington interacting, ligase, alternative splicing, cytoplasm, UBL conjugation, UBL conjugation pathway; 1.86A {Homo sapiens} SCOP: a.5.2.1 d.20.1.1 PDB: 3f92_A*
Probab=97.65 E-value=4.5e-05 Score=68.29 Aligned_cols=43 Identities=26% Similarity=0.407 Sum_probs=40.1
Q ss_pred CCCCchHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCHHHHHHHHHc
Q 023989 148 VAGNDLEQTIQQIMDMGGGTWDKETVTRALQAAYNNPERAVDYLYS 193 (274)
Q Consensus 148 ~~g~~~e~~i~~i~eMG~~~f~r~qv~~ALrAafnNpdrAvEyL~~ 193 (274)
+.+.+|++.|++|++|| |+|++|+.||+...+|.++|+|||+.
T Consensus 210 ~~~~~~~~~v~~l~~mg---f~~~~~~~al~~~nWd~~~A~e~L~~ 252 (253)
T 3e46_A 210 VSSPEYTKKIENLCAAG---FDRNAVIVALSSKSWDVETATELLLS 252 (253)
T ss_dssp CCCHHHHHHHHHHHHTT---CCHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred cCcchHHHHHHHHHHcC---CCHHHHHHHHHHcCCCHHHHHHHHhc
Confidence 34668999999999999 99999999999999999999999985
No 154
>3qx1_A FAS-associated factor 1; UBX, protein binding, P97 binding; 1.60A {Homo sapiens} PDB: 3qwz_B* 3qc8_B 3qca_A 3qq8_B 3r3m_B 1h8c_A
Probab=97.63 E-value=0.00027 Score=52.41 Aligned_cols=69 Identities=20% Similarity=0.312 Sum_probs=58.6
Q ss_pred EEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEE--eCCeec---CCCCcccccccCCCCeEEEEe
Q 023989 2 KLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLI--HNGKVL---KDETTLADNKVSEDGFLVVML 74 (274)
Q Consensus 2 ~I~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~~p~~~qkLI--~~GK~L---~D~~tL~d~~I~~~~~I~v~v 74 (274)
+|.||..+|+.+.-.+..++||.+|...|.. .+ +.....+|+ |-.|.| +.+++|.++|+.++.+|+|-.
T Consensus 9 ~i~iRlpdG~r~~~~F~~~~tl~~v~~fv~~-~~---~~~~~f~L~t~fPrk~l~~~d~~~TL~e~gL~p~a~L~ve~ 82 (84)
T 3qx1_A 9 KLRIRTPSGEFLERRFLASNKLQIVFDFVAS-KG---FPWDEYKLLSTFPRRDVTQLDPNKSLLEVKLFPQETLFLEA 82 (84)
T ss_dssp EEEEECTTSCEEEEEEETTSBHHHHHHHHHH-TT---CCTTTEEEECSSSCCBGGGSCTTSBTTTTTCCSEEEEEEEE
T ss_pred EEEEECCCCCEEEEEeCCCCCHHHHHHHHHH-cC---CCCCCeEEEeCCCCCCCcCCCCCCCHHHCCCCCCCEEEEEe
Confidence 6889999999988889999999999999998 56 667888998 557888 347899999999988887753
No 155
>2dzk_A UBX domain-containing protein 2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} PDB: 2kxj_A
Probab=97.62 E-value=0.00059 Score=53.27 Aligned_cols=71 Identities=14% Similarity=0.244 Sum_probs=59.6
Q ss_pred EEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEE--eCCeecC--C-CCcccccccCCCCeEEEEec
Q 023989 2 KLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLI--HNGKVLK--D-ETTLADNKVSEDGFLVVMLS 75 (274)
Q Consensus 2 ~I~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~~p~~~qkLI--~~GK~L~--D-~~tL~d~~I~~~~~I~v~v~ 75 (274)
+|.||..+|+.+.-.+..++||.+|...|....+ .+.....|+ |--|.|. | +++|+++|+.+...|+|...
T Consensus 15 ~IqIRlpdG~rl~~rF~~~~tl~~v~~fV~~~~~---~~~~~f~L~t~fPrk~l~~~d~~~TL~elgL~psa~L~v~~~ 90 (109)
T 2dzk_A 15 RIQFRLPDGSSFTNQFPSDAPLEEARQFAAQTVG---NTYGNFSLATMFPRREFTREDYKRRLLDLELAPSASVVLLPA 90 (109)
T ss_dssp EEEEECSSSCEEEEEECTTSBHHHHHHHHHHHHT---TSSCSCEEECSSSCCBCCTTTTTSBTGGGTCSSEEEEEEECC
T ss_pred EEEEECCCCCEEEEEeCCCCCHHHHHHHHHhccC---CCCCceEEEcCCCCcCCcccccCCCHHHCCCCCceEEEEEEC
Confidence 6889999999999999999999999999999877 555677786 5678886 3 68999999998877766654
No 156
>1pve_A HHR23B, UV excision repair protein RAD23 homolog B; XPC binding domain, solution structure, nucleotide excision repair, chaps, DNA binding protein; NMR {Homo sapiens} SCOP: a.189.1.1
Probab=97.55 E-value=9.9e-06 Score=58.99 Aligned_cols=21 Identities=29% Similarity=0.249 Sum_probs=19.1
Q ss_pred CCchHHhhccHHHHHHHHHHH
Q 023989 249 LGSLDFLRNNQQVWSLLCCQL 269 (274)
Q Consensus 249 ~~~l~~Lr~~pqf~~lRq~~~ 269 (274)
.++|+|||++|||++||++|.
T Consensus 3 ~~~l~~Lr~~Pqf~qlR~~vq 23 (72)
T 1pve_A 3 HMPLEFLRNQPQFQQMRQIIQ 23 (72)
T ss_dssp TCTTGGGTTCTTTTTHHHHHT
T ss_pred CchHHHHHcChHHHHHHHHHH
Confidence 467999999999999999984
No 157
>1wj4_A KIAA0794 protein; UBX domain, beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.2
Probab=97.11 E-value=0.0013 Score=52.48 Aligned_cols=69 Identities=20% Similarity=0.336 Sum_probs=58.8
Q ss_pred EEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEE--eCCeec--CC-CCcccccccCCCCeEEEEe
Q 023989 2 KLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLI--HNGKVL--KD-ETTLADNKVSEDGFLVVML 74 (274)
Q Consensus 2 ~I~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~~p~~~qkLI--~~GK~L--~D-~~tL~d~~I~~~~~I~v~v 74 (274)
+|.||..+|+.+.-.+..++||.+|...|... + +.....+|+ |-.|.| .| +++|.++|+.+...|+|..
T Consensus 45 ~IqIRlPdG~rl~~rF~~~~tl~~V~~fV~~~-~---~~~~~F~L~t~fPrk~l~~~d~~~TL~e~gL~psa~Liv~~ 118 (124)
T 1wj4_A 45 QLMLRYPDGKREQITLPEQAKLLALVKHVQSK-G---YPNERFELLTNFPRRKLSHLDYDITLQEAGLCPQETVFVQE 118 (124)
T ss_dssp EEEEECTTSCEEEEEEETTSCHHHHHHHHHHH-H---CCTTTEEEECSSSCCEETSSCSSSCTTTTTCCSSBCCEEEE
T ss_pred EEEEECCCCCEEEEEeCCCCCHHHHHHHHHhc-C---CCCCCeEEecCCCCcCCccCCCCCCHHHCCCCCceEEEEEE
Confidence 68899999999999999999999999999886 6 666778887 568888 34 7899999999988887764
No 158
>2cr5_A Reproduction 8; UBX domain, D0H8S2298E protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.2
Probab=96.85 E-value=0.0073 Score=46.92 Aligned_cols=69 Identities=19% Similarity=0.172 Sum_probs=57.2
Q ss_pred EEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEE--eCCeecC--CCCcccccccCCCCeEEEEe
Q 023989 2 KLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLI--HNGKVLK--DETTLADNKVSEDGFLVVML 74 (274)
Q Consensus 2 ~I~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~~p~~~qkLI--~~GK~L~--D~~tL~d~~I~~~~~I~v~v 74 (274)
+|.||..+|+.+.-.+..++||.+|...|... + +.....+|+ |-.|.|. .++||+++||.+...|+|..
T Consensus 25 ~IqiRlpdG~r~~rrF~~~~tl~~v~~fv~~~-~---~~~~~f~L~t~fPrk~l~~d~~~TL~e~gL~p~a~L~Ve~ 97 (109)
T 2cr5_A 25 TVALRCPNGRVLRRRFFKSWNSQVLLDWMMKV-G---YHKSLYRLSTSFPRRALEVEGGSSLEDIGITVDTVLNVEE 97 (109)
T ss_dssp EEEEECTTSCEEEEEEESSSBTHHHHHHHHHH-T---CCTTTEEEECSSSCCBCCCCSSCBHHHHTCSSCEEEEEEE
T ss_pred EEEEECCCCCEEEEEeCCCCCHHHHHHHHHhc-C---CCCCCeEEEeCCCCcCCCCCCCCCHHHcCCCCCeEEEEEe
Confidence 68899999999888999999999999999965 4 456778886 5678886 36899999999887776654
No 159
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=96.81 E-value=0.0013 Score=45.91 Aligned_cols=40 Identities=28% Similarity=0.388 Sum_probs=37.4
Q ss_pred chHHHHHHHHHc--CCCCCCHHHHHHHHHHhcCCHHHHHHHHHcC
Q 023989 152 DLEQTIQQIMDM--GGGTWDKETVTRALQAAYNNPERAVDYLYSG 194 (274)
Q Consensus 152 ~~e~~i~~i~eM--G~~~f~r~qv~~ALrAafnNpdrAvEyL~~G 194 (274)
..|+.|+.|.+| . ++++.|+..|++..||.|+|++.|+.-
T Consensus 8 ~~ee~l~~L~emFP~---ld~~~I~~vL~a~~gdvd~aI~~LL~m 49 (59)
T 1wgl_A 8 CSEEDLKAIQDMFPN---MDQEVIRSVLEAQRGNKDAAINSLLQM 49 (59)
T ss_dssp SCHHHHHHHHHHCSS---SCHHHHHHHHTTTTTCHHHHHHHHHHS
T ss_pred CCHHHHHHHHHHCCC---CCHHHHHHHHHHcCCCHHHHHHHHHcC
Confidence 458999999999 7 899999999999999999999999975
No 160
>1s3s_G P47 protein; AAA ATPase, protein-protein complex, UBX domain, protein binding; HET: ADP; 2.90A {Rattus norvegicus} SCOP: d.15.1.2 PDB: 1i42_A 1jru_A
Probab=96.73 E-value=0.0048 Score=49.34 Aligned_cols=66 Identities=15% Similarity=0.249 Sum_probs=53.9
Q ss_pred EEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEE--eCCeecCC-CCcccccccCCCCe
Q 023989 2 KLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLI--HNGKVLKD-ETTLADNKVSEDGF 69 (274)
Q Consensus 2 ~I~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~~p~~~qkLI--~~GK~L~D-~~tL~d~~I~~~~~ 69 (274)
+|.||..+|+.+.-.+..++||.+|+..|...... +......|+ |-.|.|.| ++||.++|+.+...
T Consensus 54 ~IqIRlpdG~rl~~rF~~~~tl~~v~~fV~~~~~~--~~~~~f~L~t~fPrk~l~d~~~TL~eagL~psav 122 (127)
T 1s3s_G 54 NIQIRLADGGRLVQKFNHSHRISDIRLFIVDARPA--MAATSFVLMTTFPNKELADENQTLKEANLLNAVI 122 (127)
T ss_dssp CEEEEETTTTEEEEECCSSCBHHHHHHHHHHHCSG--GGTSCEEEEETTTTEECCSTTCBHHHHTCSSCEE
T ss_pred EEEEECCCCCEEEEEeCCCCCHHHHHHHHHHhCcC--CCCCCeEEecCCCCCCCCCCCCcHHHCCCcCceE
Confidence 58899999999999999999999999999986421 445677886 56789976 68999999998433
No 161
>2pwq_A Ubiquitin conjugating enzyme; structural genomics consortium, SGC, ligase; 1.90A {Plasmodium yoelii}
Probab=96.58 E-value=0.00035 Score=61.10 Aligned_cols=41 Identities=27% Similarity=0.334 Sum_probs=0.0
Q ss_pred chHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCHHHHHHHHHcCC
Q 023989 152 DLEQTIQQIMDMGGGTWDKETVTRALQAAYNNPERAVDYLYSGI 195 (274)
Q Consensus 152 ~~e~~i~~i~eMG~~~f~r~qv~~ALrAafnNpdrAvEyL~~GI 195 (274)
++++.|+++++|| |+|++|++||+-.-.+.++|+|.|+.|+
T Consensus 176 ~~~~~v~~~~~mg---f~~~~~~~al~~~~~~~~~~~~~l~~~~ 216 (216)
T 2pwq_A 176 PREVIIKKITEMG---FSEDQAKNALIKANWNETLALNTLLENS 216 (216)
T ss_dssp --------------------------------------------
T ss_pred chhhHHHHHHHcC---CCHHHHHHHHHHcCCchHHHHHHHhcCC
Confidence 4689999999999 9999999999999999999999999884
No 162
>2dhy_A CUE domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.48 E-value=0.0055 Score=43.84 Aligned_cols=44 Identities=18% Similarity=0.262 Sum_probs=40.1
Q ss_pred CCCCchHHHHHHHHHc--CCCCCCHHHHHHHHHHhcCCHHHHHHHHHcC
Q 023989 148 VAGNDLEQTIQQIMDM--GGGTWDKETVTRALQAAYNNPERAVDYLYSG 194 (274)
Q Consensus 148 ~~g~~~e~~i~~i~eM--G~~~f~r~qv~~ALrAafnNpdrAvEyL~~G 194 (274)
+.+.++++.|++|.+| - ++++-|+..|++.-+|.|+|++-||.-
T Consensus 13 ~~~~~~~~~v~~L~~MFP~---lD~~vI~~vL~a~~G~vd~aId~LL~m 58 (67)
T 2dhy_A 13 VRRLEFNQAMDDFKTMFPN---MDYDIIECVLRANSGAVDATIDQLLQM 58 (67)
T ss_dssp CCCCCSHHHHHHHHHHCSS---SCHHHHHHHHHHHTSCHHHHHHHHHHH
T ss_pred ccCCCHHHHHHHHHHHCCC---CCHHHHHHHHHHcCCCHHHHHHHHHhc
Confidence 4567889999999999 5 899999999999999999999999863
No 163
>1otr_A Protein CUE2; protein-protein complex, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.4
Probab=96.38 E-value=0.0049 Score=41.41 Aligned_cols=39 Identities=21% Similarity=0.283 Sum_probs=36.2
Q ss_pred hHHHHHHHHHc--CCCCCCHHHHHHHHHHhcCCHHHHHHHHHcC
Q 023989 153 LEQTIQQIMDM--GGGTWDKETVTRALQAAYNNPERAVDYLYSG 194 (274)
Q Consensus 153 ~e~~i~~i~eM--G~~~f~r~qv~~ALrAafnNpdrAvEyL~~G 194 (274)
.+.-|+.|+|| . -++++|.++|+++.+|.|||+..||++
T Consensus 4 ~e~~v~~L~EMFP~---~~~~~ik~~L~~~~Gd~d~Ai~~LL~~ 44 (49)
T 1otr_A 4 HESKLSILMDMFPA---ISKSKLQVHLLENNNDLDLTIGLLLKE 44 (49)
T ss_dssp HHHHHHHHHHHCSS---SCHHHHHHHHHHTTTCSHHHHHHHHHH
T ss_pred hHHHHHHHHHHCCC---CCHHHHHHHHHHcCCCHHHHHHHHHhc
Confidence 47889999999 5 699999999999999999999999987
No 164
>3ihp_A Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease, thiol protease, UBL conjugation pathway, metal-binding, zinc-finger,structural genomics; 2.80A {Homo sapiens}
Probab=96.18 E-value=0.0039 Score=64.46 Aligned_cols=41 Identities=34% Similarity=0.608 Sum_probs=38.1
Q ss_pred CchHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCHHHHHHHHHcC
Q 023989 151 NDLEQTIQQIMDMGGGTWDKETVTRALQAAYNNPERAVDYLYSG 194 (274)
Q Consensus 151 ~~~e~~i~~i~eMG~~~f~r~qv~~ALrAafnNpdrAvEyL~~G 194 (274)
...++.|..|++|| |+++++++||++..||.+||||||++.
T Consensus 718 ~~~~e~i~~l~~mG---f~~~~a~~aL~~t~~~~eraidwlfs~ 758 (854)
T 3ihp_A 718 PPPEDCVTTIVSMG---FSRDQALKALRATNNSLERAVDWIFSH 758 (854)
T ss_dssp -CCHHHHHHHHTTT---CCHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHcC---CCHHHHHHHHHhhcCcHHHHHHhhhcC
Confidence 44688999999999 999999999999999999999999986
No 165
>2di0_A Activating signal cointegrator 1 complex subunit 2; ASCC2, CUE domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=96.05 E-value=0.019 Score=41.45 Aligned_cols=50 Identities=18% Similarity=0.356 Sum_probs=43.9
Q ss_pred CCCCchHHHHHHHHHc--CCCCCCHHHHHHHHHHhcCCHHHHHHHHHcC-CCCccc
Q 023989 148 VAGNDLEQTIQQIMDM--GGGTWDKETVTRALQAAYNNPERAVDYLYSG-IPETAE 200 (274)
Q Consensus 148 ~~g~~~e~~i~~i~eM--G~~~f~r~qv~~ALrAafnNpdrAvEyL~~G-IP~~~~ 200 (274)
+.+.+.+..|.+|.++ - |-...|.++|..-.+|+|+.|.+|+.| +|.++.
T Consensus 8 ~~~~~l~s~I~qV~DLfPd---LG~gfi~~~L~~y~~nvE~vin~LLE~~LPp~L~ 60 (71)
T 2di0_A 8 MCGVELDSLISQVKDLLPD---LGEGFILACLEYYHYDPEQVINNILEERLAPTLS 60 (71)
T ss_dssp CSSHHHHHHHHHHHHHCCS---SCHHHHHHHHHHTTTCHHHHHHHHHTTCCCTTTT
T ss_pred CcHHHHHHHHHHHHHHccc---CCHHHHHHHHHHhCCCHHHHHHHHHccCCCHHHH
Confidence 4677899999999998 5 789999999999888999999999999 776654
No 166
>2daj_A KIAA0977 protein, COBL-like 1; ubiquitin-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=95.94 E-value=0.033 Score=41.56 Aligned_cols=71 Identities=18% Similarity=0.199 Sum_probs=59.1
Q ss_pred EEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEe---CCeecCCCCcccccccCCCCeEEEEeccCC
Q 023989 2 KLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIH---NGKVLKDETTLADNKVSEDGFLVVMLSKSK 78 (274)
Q Consensus 2 ~I~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~~p~~~qkLI~---~GK~L~D~~tL~d~~I~~~~~I~v~v~k~k 78 (274)
++.|....-+++.+.|.+..++.+|--.|.+++. +.++..-|.. .+..|+-+++|.||||++ ++.+-.++.
T Consensus 12 RLvVNy~~tQKtVvRVSP~vpL~ellp~IC~Kce---fdp~~~~Ll~d~~~~e~LdLskSLndlgirE---Lya~d~~~e 85 (91)
T 2daj_A 12 RVVINFKKTQKTIVRVSPHASLQELAPIICSKCE---FDPLHTLLLKDYQSQEPLDLTKSLNDLGLRE---LYAMDVNRE 85 (91)
T ss_dssp EEEEEETTTEEEEEEECSSSCTTTHHHHHHHHTT---CCTTSEEEESCSSCCCBCCTTSCHHHHTCSE---EEEEECCCC
T ss_pred EEEEeecCcceeEEEeCCCCcHHHHHHHHhhccc---CChhhEEEecCCCCCcccchhcchhhhhhhh---hheeccccc
Confidence 4566666778889999999999999999999977 8888888874 456788899999999997 777766553
No 167
>2l32_A Small archaeal modifier protein 2; protein BIN; NMR {Haloferax volcanii}
Probab=95.84 E-value=0.032 Score=40.34 Aligned_cols=60 Identities=15% Similarity=0.215 Sum_probs=46.9
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCcccccccCCCCeEEEE
Q 023989 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVM 73 (274)
Q Consensus 1 M~I~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~~p~~~qkLI~~GK~L~D~~tL~d~~I~~~~~I~v~ 73 (274)
|+|+||........++++...||.+|-++ .| ++++..-++.+|+++..+. +.+||.|-++
T Consensus 1 M~v~Vkl~g~~~~~~ev~~g~Tv~dLL~~----Lg---l~~~~VvV~vNG~~v~~d~------~l~GD~VeIv 60 (74)
T 2l32_A 1 MNVTVEVVGEETSEVAVDDDGTYADLVRA----VD---LSPHEVTVLVDGRPVPEDQ------SVEVDRVKVL 60 (74)
T ss_dssp CEEEEECSSSSEEEEECSTTCSHHHHHHT----TC---CCSSCCCEECCCCCCCTTS------SSCCCCEEEC
T ss_pred CEEEEEEeCccceeEEcCCCCcHHHHHHH----cC---CCcceEEEEECCEECCHHH------CCCCCEEEEE
Confidence 99999977444556899999999988754 67 8888887888999986665 2358888776
No 168
>2cp9_A EF-TS, EF-TSMT, elongation factor TS, mitochondrial; UBA, structural genomics, human, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.2
Probab=95.72 E-value=0.017 Score=40.94 Aligned_cols=36 Identities=14% Similarity=0.228 Sum_probs=33.4
Q ss_pred HHHHHHHHHc-CCCCCCHHHHHHHHHHhcCCHHHHHHHHH
Q 023989 154 EQTIQQIMDM-GGGTWDKETVTRALQAAYNNPERAVDYLY 192 (274)
Q Consensus 154 e~~i~~i~eM-G~~~f~r~qv~~ALrAafnNpdrAvEyL~ 192 (274)
.+.|..|.++ | ....+|..||..+.+|.+.|++||-
T Consensus 10 ~~~Vk~LRe~TG---ag~~dcKkAL~e~~GDi~~Ai~~Lr 46 (64)
T 2cp9_A 10 KELLMKLRRKTG---YSFVNCKKALETCGGDLKQAEIWLH 46 (64)
T ss_dssp CHHHHHHHHHHC---CCHHHHHHHHHHHTSCHHHHHHHHH
T ss_pred HHHHHHHHHHhC---CCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 3689999997 8 9999999999999999999999995
No 169
>4e71_A Plexin-B2, MM1; transmembrane, signaling, RBD, structural genomics consortium, SGC, signaling protein; 2.26A {Homo sapiens}
Probab=95.40 E-value=0.091 Score=41.09 Aligned_cols=64 Identities=23% Similarity=0.283 Sum_probs=46.4
Q ss_pred CcEEEEEeCCCCCHHHHHHHHHHHhCCCCCC------CCCeEEEe----CCeecCCC-------------CcccccccCC
Q 023989 10 GSHFEIRVQPSDTVMAVKKNIEDVQGKDNYP------CGQQLLIH----NGKVLKDE-------------TTLADNKVSE 66 (274)
Q Consensus 10 g~~~~ieV~~~~TV~~LK~kI~~~~g~~~~p------~~~qkLI~----~GK~L~D~-------------~tL~d~~I~~ 66 (274)
+..+.+.|-.-+||.++|+||-+..-+. +| ++.+.|-+ .|++|.|. .||..|+|.+
T Consensus 23 ~~~i~vkVLdCDTItQvKeKiLd~vyk~-~pyS~rP~~~~~dLEwr~g~~~~iL~D~D~ts~~~~~wkrLNTL~HY~V~d 101 (111)
T 4e71_A 23 VDAIPVKVLNCDTISQVKEKIIDQVYRG-QPCSCWPRPDSVVLEWRPGSTAQILSDLDLTSQREGRWKRVNTLMHYNVRD 101 (111)
T ss_dssp CCCEEEEEETTCBHHHHHHHHHHHHTC----------CCSEEEEEC--CCCEECCSSCTTSCC---CCCCCBHHHHTCCT
T ss_pred CCceeeeeeccCcHHHHHHHHHHHHHcC-CccccCCCCCceeeEEecCCCCccccccCccceecCcceEecchhhcCCCC
Confidence 3457788889999999999999876432 33 34566765 35777662 3788999999
Q ss_pred CCeEEEEe
Q 023989 67 DGFLVVML 74 (274)
Q Consensus 67 ~~~I~v~v 74 (274)
|.+|.++-
T Consensus 102 gatl~l~~ 109 (111)
T 4e71_A 102 GATLILSK 109 (111)
T ss_dssp TCEEEEEE
T ss_pred CCEEEEEe
Confidence 99998763
No 170
>1ryj_A Unknown; beta/alpha protein, structural genomics, protein structure initiative, OCSP, NESG, PSI; NMR {Methanothermococcusthermolithotrophicus} SCOP: d.15.3.2
Probab=95.30 E-value=0.11 Score=36.68 Aligned_cols=60 Identities=20% Similarity=0.301 Sum_probs=44.9
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCcccccccCCCCeEEEE
Q 023989 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVM 73 (274)
Q Consensus 1 M~I~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~~p~~~qkLI~~GK~L~D~~tL~d~~I~~~~~I~v~ 73 (274)
|+|+|.--. ....+++....||.+|.+.+ + ++.....+..+|+++..+. -+++||.|.++
T Consensus 5 m~i~vNg~~-~~~~~~~~~~~tv~~Ll~~l----~---~~~~~v~vavN~~~v~~~~-----~L~~gD~V~ii 64 (70)
T 1ryj_A 5 MKFTVITDD-GKKILESGAPRRIKDVLGEL----E---IPIETVVVKKNGQIVIDEE-----EIFDGDIIEVI 64 (70)
T ss_dssp EEEEEEETT-EEEEEEESSCCBHHHHHHHT----T---CCTTTEEEEETTEECCTTS-----BCCTTCEEEEE
T ss_pred EEEEEeCcc-CceeEECCCCCcHHHHHHHh----C---CCCCCEEEEECCEECCCcc-----cCCCCCEEEEE
Confidence 566666322 24567788889999999875 5 5567777889999997665 58889999887
No 171
>4a3p_A Ubiquitin carboxyl-terminal hydrolase 15; 1.40A {Homo sapiens} PDB: 4a3o_A 3pv1_A 3ppa_A* 3t9l_A 3lmn_A
Probab=95.01 E-value=0.077 Score=45.88 Aligned_cols=61 Identities=20% Similarity=0.299 Sum_probs=50.6
Q ss_pred EEEEeCCCCCHHHHHHHHHHHhCCCCCCCC-CeEE--Ee-CC--eecCC-CCcccccccCCCCeEEEEecc
Q 023989 13 FEIRVQPSDTVMAVKKNIEDVQGKDNYPCG-QQLL--IH-NG--KVLKD-ETTLADNKVSEDGFLVVMLSK 76 (274)
Q Consensus 13 ~~ieV~~~~TV~~LK~kI~~~~g~~~~p~~-~qkL--I~-~G--K~L~D-~~tL~d~~I~~~~~I~v~v~k 76 (274)
+.+.++..+||.+|++++.+.++ ++.+ ..|| +| .+ ..|+| +++|.+++|.++..|+|-++.
T Consensus 142 ~~~~~Sk~~ti~~l~~~~~~~~~---i~~~~~~RlW~~~~~~~~~~L~~~~~tl~~~~l~~~Q~illE~r~ 209 (217)
T 4a3p_A 142 VTRRFSKADTIDTIEKEIRKIFS---IPDEKETRLWNKYMSNTFEPLNKPDSTIQDAGLYQGQVLVIEQKN 209 (217)
T ss_dssp EEEEECTTSBHHHHHHHHHHHTT---CCTTSCEEEEEEEETTEEEECCCTTSBHHHHTCCTTCEEEEEECC
T ss_pred eEEEEcccchHHHHHHHHHHHhC---CCCCCceEEEEecCCCCeeecCCCCCCHHHhCCCCCCEEEEEEec
Confidence 56788999999999999999999 8876 6887 34 33 44666 579999999999999988875
No 172
>2r2o_A Plexin-B1; effector domain, structural genomics, structural GEN consortium, SGC, glycoprotein, membrane, phosphorylation, R secreted, transmembrane; 2.00A {Homo sapiens} PDB: 2rex_A* 2jph_A
Probab=94.93 E-value=0.096 Score=42.43 Aligned_cols=65 Identities=23% Similarity=0.270 Sum_probs=48.0
Q ss_pred cEEEEEeCCCCCHHHHHHHHHHHhCCCCCC------CCCeEEEe----CCe-ecCCC-------------CcccccccCC
Q 023989 11 SHFEIRVQPSDTVMAVKKNIEDVQGKDNYP------CGQQLLIH----NGK-VLKDE-------------TTLADNKVSE 66 (274)
Q Consensus 11 ~~~~ieV~~~~TV~~LK~kI~~~~g~~~~p------~~~qkLI~----~GK-~L~D~-------------~tL~d~~I~~ 66 (274)
..+.+.|-.-+||.++|+||-+..-++ +| ++..-|-+ .|+ +|.|. .||..|+|.+
T Consensus 41 ~~i~VkVLdCDTItQvKeKiLDavYk~-~PySqRP~~~d~dLEwr~g~~g~liL~D~D~tS~~~~~wkrLNTL~HY~V~D 119 (138)
T 2r2o_A 41 QGVPVKVLDCDTISQAKEKMLDQLYKG-VPLTQRPDPRTLDVEWRSGVAGHLILSDEDVTSEVQGLWRRLNTLQHYKVPD 119 (138)
T ss_dssp CCEEEEEETTCBHHHHHHHHHHHHTTT-SCGGGCCCGGGEEEEEECSSSCEEEECSSSTTCCEETTEEECCBHHHHTCCT
T ss_pred CceeEEEeccccHHHHHHHHHHHHHcC-CccccCCCccceeEEEecCCcCceEeeccCCcccccCCceeecchhccCCCC
Confidence 457888889999999999999887654 54 33455654 244 46653 2899999999
Q ss_pred CCeEEEEecc
Q 023989 67 DGFLVVMLSK 76 (274)
Q Consensus 67 ~~~I~v~v~k 76 (274)
|.+|.++-+.
T Consensus 120 ga~l~l~~~~ 129 (138)
T 2r2o_A 120 GATVALVPCL 129 (138)
T ss_dssp TCEEEEEEC-
T ss_pred CCEEEEEECC
Confidence 9999887554
No 173
>3jyu_A Ubiquitin carboxyl-terminal hydrolase; domain in ubiquitin-specific peptidases (DUSP), proto- oncogene, ubiquitin-fold, UBL, protease, thioesterase; HET: 1PS; 2.37A {Mus musculus}
Probab=94.70 E-value=0.18 Score=43.92 Aligned_cols=62 Identities=16% Similarity=0.283 Sum_probs=50.9
Q ss_pred EEEEeCCCCCHHHHHHHHHHHhCCCCCCCC-CeEEEe-C----CeecCC-CCcccccccCCCCeEEEEeccC
Q 023989 13 FEIRVQPSDTVMAVKKNIEDVQGKDNYPCG-QQLLIH-N----GKVLKD-ETTLADNKVSEDGFLVVMLSKS 77 (274)
Q Consensus 13 ~~ieV~~~~TV~~LK~kI~~~~g~~~~p~~-~qkLI~-~----GK~L~D-~~tL~d~~I~~~~~I~v~v~k~ 77 (274)
+++.+...+||.+|++++...++ ++.+ ..||-. . ...|.| +.+|.+++|.++..|+|-++.+
T Consensus 154 ~~~~~Sk~~ti~~l~~~~~~~~~---i~~~~~~RLW~~~~~~~~~~L~~~~~tl~d~~L~~~Q~illE~r~~ 222 (231)
T 3jyu_A 154 LSCHFSKADTIATIEKEMRKLFN---IPAERETRLWNKYMSNTYEQLSKLDNTIQDAGLYQGQVLVIEPQNE 222 (231)
T ss_dssp EEEEECTTCBHHHHHHHHHHHTT---CCTTSCEEEEECSSSSSCEECCCTTSBTTTTTCCTTEEEEEEECCT
T ss_pred EEEEecccCcHHHHHHHHHHHhC---CCCCCeEEEEEecCCCCHhhhcCCCCCHHHhCCCCCCEEEEEEecC
Confidence 55778999999999999999999 8887 688843 2 245666 6899999999999999888753
No 174
>1vjk_A Molybdopterin converting factor, subunit 1; structural genomics, PSI, protein structure INI southeast collaboratory for structural genomics; 1.51A {Pyrococcus furiosus} SCOP: d.15.3.1
Probab=94.56 E-value=0.25 Score=37.03 Aligned_cols=68 Identities=19% Similarity=0.275 Sum_probs=48.1
Q ss_pred CEEEEEeCC------C-cEEEEEeCCCCCHHHHHHHHHHHhCC--CCC------CCCCeEEEeCCeecCCCCcccccccC
Q 023989 1 MKLTVKTLK------G-SHFEIRVQPSDTVMAVKKNIEDVQGK--DNY------PCGQQLLIHNGKVLKDETTLADNKVS 65 (274)
Q Consensus 1 M~I~VKtl~------g-~~~~ieV~~~~TV~~LK~kI~~~~g~--~~~------p~~~qkLI~~GK~L~D~~tL~d~~I~ 65 (274)
|+|+||.+. | ....+++....||.+|.+.+...... ..+ ......+..+|+.... +.-|+
T Consensus 10 ~~v~V~~FA~lre~~g~~~~~~e~~~~~Tv~~Ll~~L~~~~p~l~~~l~~~~g~~~~~v~v~VNg~~v~~-----~~~L~ 84 (98)
T 1vjk_A 10 VKVKVKYFARFRQLAGVDEEEIELPEGARVRDLIEEIKKRHEKFKEEVFGEGYDEDADVNIAVNGRYVSW-----DEELK 84 (98)
T ss_dssp EEEEEEECTHHHHHHSSSEEEEEECTTCBHHHHHHHHHHHCGGGGGSCBCSSSCTTSSBEEEETTBCCCT-----TCBCC
T ss_pred EEEEEEEhHHHHHHhCCCeEEEECCCCCCHHHHHHHHHhHChhHHHHhhccccccCCcEEEEECCEECCC-----CCCCC
Confidence 678888654 3 46778888889999999999877420 000 0244567788888763 56689
Q ss_pred CCCeEEEE
Q 023989 66 EDGFLVVM 73 (274)
Q Consensus 66 ~~~~I~v~ 73 (274)
+||.|.++
T Consensus 85 dGDeV~i~ 92 (98)
T 1vjk_A 85 DGDVVGVF 92 (98)
T ss_dssp TTCEEEEE
T ss_pred CCCEEEEE
Confidence 99998876
No 175
>3rpf_C Molybdopterin converting factor, subunit 1 (MOAD); MCSG, PSI-biology, structural genomics, midwest center for S genomics, transferase; 1.90A {Helicobacter pylori}
Probab=94.09 E-value=0.15 Score=36.27 Aligned_cols=65 Identities=8% Similarity=0.230 Sum_probs=45.3
Q ss_pred CEEEEEeCCCc-EEEEEeCCCCCHHHHHHHHHHHhCCCCCCC--CCeEEEeCCeecCCCCcccccccCCCCeEEEE
Q 023989 1 MKLTVKTLKGS-HFEIRVQPSDTVMAVKKNIEDVQGKDNYPC--GQQLLIHNGKVLKDETTLADNKVSEDGFLVVM 73 (274)
Q Consensus 1 M~I~VKtl~g~-~~~ieV~~~~TV~~LK~kI~~~~g~~~~p~--~~qkLI~~GK~L~D~~tL~d~~I~~~~~I~v~ 73 (274)
|+|+||.+..- .-.+++ ...||.+|++.+....+ +.. ....+..+|+.+.+ .+.-+++||.|.++
T Consensus 1 M~v~V~~fa~l~~~~~e~-~~~tv~~ll~~L~~~~~---l~~~l~~~~vavN~~~v~~----~~~~l~~gDeV~i~ 68 (74)
T 3rpf_C 1 MMVEVRFFGPIKEENFFI-KANDLKELRAILQEKEG---LKEWLGVCAIALNDHLIDN----LNTPLKDGDVISLL 68 (74)
T ss_dssp CEEEEEECTTCCCCCEEE-ECSSHHHHHHHHHTCTT---TTTTTTTCEEEESSSEECC----TTCCCCTTCEEEEE
T ss_pred CEEEEEEEeecceeEEee-CCCcHHHHHHHHHHCcC---HHHHhhccEEEECCEEcCC----CCcCCCCCCEEEEE
Confidence 88999976431 134666 67899999999986543 221 45667778888543 24568899999887
No 176
>3h6n_A Plexin-D1; structural genomics consortium, SGC, membrane, transmembrane, receptor, alternative splicing, cell membrane, glycoprotein, polymorphism; 2.00A {Homo sapiens}
Probab=93.97 E-value=0.34 Score=38.65 Aligned_cols=65 Identities=28% Similarity=0.329 Sum_probs=48.0
Q ss_pred CcEEEEEeCCCCCHHHHHHHHHHHhCCCCCC------CCCeEEEe-C---Ce-ecCCC-------------CcccccccC
Q 023989 10 GSHFEIRVQPSDTVMAVKKNIEDVQGKDNYP------CGQQLLIH-N---GK-VLKDE-------------TTLADNKVS 65 (274)
Q Consensus 10 g~~~~ieV~~~~TV~~LK~kI~~~~g~~~~p------~~~qkLI~-~---GK-~L~D~-------------~tL~d~~I~ 65 (274)
+..+.+.|-.-+||.++|+||-+..-+. +| ++.+.|-+ . |+ +|.|. .||..|+|.
T Consensus 16 ~~~i~VkVLdCDTItQvKeKiLd~vyk~-~p~S~rP~~~~~dLEwr~g~~~~~iL~D~D~ts~~~~~~krLNTL~HY~V~ 94 (127)
T 3h6n_A 16 MDSLSVRAMDTDTLTQVKEKILEAFCKN-VPYSQWPRAEDVDLEWFASSTQSYILRDLDDTSVVEDGRKKLNTLAHYKIP 94 (127)
T ss_dssp CCCEEEEEETTSBHHHHHHHHHHHHSTT-SCGGGSCCGGGEEEEEECSSSCEEECCSSSTTSCEETTEECCCBTTTTTCC
T ss_pred CCceeeeeeccCchhhhhHHHHHHHhcc-CCcccCCCCcccceEEecCCCCceEeecCCCcceecCceeEeccccccCCC
Confidence 4557888889999999999999876433 44 35667766 3 34 36552 378899999
Q ss_pred CCCeEEEEec
Q 023989 66 EDGFLVVMLS 75 (274)
Q Consensus 66 ~~~~I~v~v~ 75 (274)
+|.+|.+..+
T Consensus 95 dgatv~l~~~ 104 (127)
T 3h6n_A 95 EGASLAMSLI 104 (127)
T ss_dssp TTCEEEEEEC
T ss_pred CCCEEEEEEc
Confidence 9999988754
No 177
>3ivf_A Talin-1; FERM domain, cell membrane, cell projection, cytoskeleton, M phosphoprotein, cell adhesion, structural protein; 1.94A {Mus musculus} PDB: 2kma_A 2kc1_A
Probab=93.42 E-value=0.27 Score=45.34 Aligned_cols=71 Identities=14% Similarity=0.069 Sum_probs=54.4
Q ss_pred EEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCC-CCCCCCeEEEe------CCeecCCCCcccccccCCCCeEEEEe
Q 023989 3 LTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKD-NYPCGQQLLIH------NGKVLKDETTLADNKVSEDGFLVVML 74 (274)
Q Consensus 3 I~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~-~~p~~~qkLI~------~GK~L~D~~tL~d~~I~~~~~I~v~v 74 (274)
++|... +.+-++.++++.||.++..+|.++.... ..+.++.-|.. +|+-|++.++|+.|++++++.|....
T Consensus 6 ~~~~~~-~~~~~~~f~~~~~v~~~~~~i~e~~~~~~~~~~~~y~l~~~~~~~~~~~Wl~~~~~l~~y~~~~~~~l~~~~ 83 (371)
T 3ivf_A 6 LKISIG-NVVKTMQFEPSTMVYDACRMIRERIPEALAGPPNDFGLFLSDDDPKKGIWLEAGKALDYYMLRNGDTMEYRK 83 (371)
T ss_dssp EEEEET-TEEEEEEECTTCBHHHHHHHHHTTCGGGGSSCGGGEEEEECCSSGGGCEECCTTSBGGGGTCCTTCEEEEEE
T ss_pred EEEEec-ceeEEEEECCCCCHHHHHHHHHHhcccccCCCHHHCeEeccCCCCCcCEeccCCCCHHHhCCCCCceeeccC
Confidence 444433 6667899999999999999998887510 13466667766 56779999999999999999887753
No 178
>4e74_A Plexin-A4; RBD, structural genomics, structural genomics consor SGC, signaling protein; 1.58A {Homo sapiens} PDB: 3q3j_A*
Probab=93.24 E-value=0.27 Score=38.71 Aligned_cols=64 Identities=28% Similarity=0.483 Sum_probs=46.0
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHhCCCCCCC------CCeEEEe-CC---e-ecCCC-------------CcccccccCCC
Q 023989 12 HFEIRVQPSDTVMAVKKNIEDVQGKDNYPC------GQQLLIH-NG---K-VLKDE-------------TTLADNKVSED 67 (274)
Q Consensus 12 ~~~ieV~~~~TV~~LK~kI~~~~g~~~~p~------~~qkLI~-~G---K-~L~D~-------------~tL~d~~I~~~ 67 (274)
.+.+.|-.-+||.++|+||-+..-+. +|. +.+.|-+ .| + +|.|. .||..|+|.+|
T Consensus 28 ~i~VkVLdCDTItQvKeKiLd~vyk~-~p~S~rP~~~~~dLEwr~g~~~~~iL~D~D~ts~~~~~wkrLNTL~HY~V~dg 106 (117)
T 4e74_A 28 EVPVKILNCDTITQVKEKILDAIFKN-VPCSHRPKAADMDLEWRQGSGARMILQDEDITTKIENDWKRLNTLAHYQVPDG 106 (117)
T ss_dssp CEEEEEETTSBHHHHHHHHHHHHTTT-SCGGGSCCGGGEEEEEECTTSCEEEECSSSTTCCC---CCCCCBHHHHTCCTT
T ss_pred ceEeeeecCCchHHHHHHHHHHHhcC-CCcccCCCCCceeEEEecCCCCceEeecCCCccEecCcceEeccccccCCCCC
Confidence 47778888999999999999876433 443 4556655 33 3 35441 37889999999
Q ss_pred CeEEEEecc
Q 023989 68 GFLVVMLSK 76 (274)
Q Consensus 68 ~~I~v~v~k 76 (274)
.+|.++-++
T Consensus 107 atl~l~~~~ 115 (117)
T 4e74_A 107 SVVALVSKQ 115 (117)
T ss_dssp CEEEEEECC
T ss_pred CEEEEEeCC
Confidence 999887543
No 179
>3ihp_A Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease, thiol protease, UBL conjugation pathway, metal-binding, zinc-finger,structural genomics; 2.80A {Homo sapiens}
Probab=92.51 E-value=0.085 Score=54.47 Aligned_cols=42 Identities=24% Similarity=0.414 Sum_probs=37.4
Q ss_pred hHHHHHHHHHcCCCCCCHHHHHHHHHHhcCC-HHHHHHHHHcCCCC
Q 023989 153 LEQTIQQIMDMGGGTWDKETVTRALQAAYNN-PERAVDYLYSGIPE 197 (274)
Q Consensus 153 ~e~~i~~i~eMG~~~f~r~qv~~ALrAafnN-pdrAvEyL~~GIP~ 197 (274)
.++.|++|++|| |++..+++||.+.-|+ .++|++||+..+-+
T Consensus 652 d~~~l~~L~~mG---f~~~~~~kal~~t~n~~~e~a~~wl~~hmdd 694 (854)
T 3ihp_A 652 DESVIIQLVEMG---FPMDACRKAVYYTGNSGAEAAMNWVMSHMDD 694 (854)
T ss_dssp -CHHHHHHHHHT---CCHHHHHHHHHHTTSCCHHHHHHHHHHHTTS
T ss_pred CHHHHHHHHhcC---CCHHHHHHHHhhcCCCchHHHhHHHhhccCc
Confidence 367999999999 9999999999999885 99999999988654
No 180
>1q02_A Sequestosome 1; helical bundle, protein binding; NMR {Homo sapiens} SCOP: a.5.2.1 PDB: 2jy7_A 2jy8_A 2k0b_X 2knv_A 2rru_A 3b0f_A
Probab=92.49 E-value=0.072 Score=35.92 Aligned_cols=38 Identities=29% Similarity=0.419 Sum_probs=33.3
Q ss_pred CchHHHHHHHHHcCCCCCCHHHH--HHHHHHhcCCHHHHHHHH
Q 023989 151 NDLEQTIQQIMDMGGGTWDKETV--TRALQAAYNNPERAVDYL 191 (274)
Q Consensus 151 ~~~e~~i~~i~eMG~~~f~r~qv--~~ALrAafnNpdrAvEyL 191 (274)
+..++.|.+|++|| |+-|-- .+.|.+..+|..+|++-|
T Consensus 8 ~rl~~al~qMl~MG---F~negGWLt~LL~~k~gDI~~aLD~l 47 (52)
T 1q02_A 8 PRLIESLSQMLSMG---FSDEGGWLTRLLQTKNYDIGAALDTI 47 (52)
T ss_dssp HHHHHHHHHHHTTT---CCCTTSHHHHHHHHTTTCHHHHHHHH
T ss_pred hHHHHHHHHHHHcC---CCccccHHHHHHHHccCCHHHHHHHh
Confidence 45789999999999 976654 699999999999999987
No 181
>3po0_A Small archaeal modifier protein 1; ubiquitin-like protein, protein binding; 1.55A {Haloferax volcanii} PDB: 2l83_A
Probab=92.45 E-value=0.98 Score=32.86 Aligned_cols=56 Identities=11% Similarity=0.106 Sum_probs=41.7
Q ss_pred cEEEEEeCCCCCHHHHHHHHHHHhCCCCC-----C-----CCCeEEEeCCeecCCCCcccccccCCCCeEEEE
Q 023989 11 SHFEIRVQPSDTVMAVKKNIEDVQGKDNY-----P-----CGQQLLIHNGKVLKDETTLADNKVSEDGFLVVM 73 (274)
Q Consensus 11 ~~~~ieV~~~~TV~~LK~kI~~~~g~~~~-----p-----~~~qkLI~~GK~L~D~~tL~d~~I~~~~~I~v~ 73 (274)
....+++....||.+|++.+...... + . .....+..+|+...+ +.-|++||.|.++
T Consensus 18 ~~~~~~~~~~~Tv~~ll~~L~~~~p~--~~~~~l~~~g~l~~~~~v~VN~~~v~~-----~~~l~~gDeV~i~ 83 (89)
T 3po0_A 18 RTVRVDVDGDATVGDALDALVGAHPA--LESRVFGDDGELYDHINVLRNGEAAAL-----GEATAAGDELALF 83 (89)
T ss_dssp SEEEEECCTTCBHHHHHHHHHHHCGG--GHHHHBCTTSCBCTTSEEEETTEECCT-----TSBCCTTCEEEEE
T ss_pred CeEEEECCCCCcHHHHHHHHHHHCcH--HHHHHhccCCcccccEEEEECCEECCC-----CcccCCCCEEEEE
Confidence 56788888889999999999887531 1 0 023577789988875 4558889999887
No 182
>4dbg_B Ring finger protein 31; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens}
Probab=91.34 E-value=0.15 Score=42.26 Aligned_cols=37 Identities=22% Similarity=0.227 Sum_probs=31.9
Q ss_pred hHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCHHHHHHHH
Q 023989 153 LEQTIQQIMDMGGGTWDKETVTRALQAAYNNPERAVDYL 191 (274)
Q Consensus 153 ~e~~i~~i~eMG~~~f~r~qv~~ALrAafnNpdrAvEyL 191 (274)
+...|.+|++.| .|+|++|+.||+.+.+|.++|+--|
T Consensus 102 R~~K~~eL~s~G--~~~~~~~~~aL~~~~Gdv~~Al~eL 138 (162)
T 4dbg_B 102 RRRKVQELQSLG--FGPEEGSLQALFQHGGDVSRALTEL 138 (162)
T ss_dssp HHHHHHHHHHTT--CCGGGTHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHHhcC--CchHHHHHHHHHHcCCcHHHHHHHH
Confidence 455778899998 4499999999999999999999655
No 183
>1oey_A P67-PHOX, neutrophil cytosol factor 2; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2
Probab=90.90 E-value=0.44 Score=35.23 Aligned_cols=44 Identities=14% Similarity=0.072 Sum_probs=37.9
Q ss_pred EEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCC
Q 023989 2 KLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNG 50 (274)
Q Consensus 2 ~I~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~~p~~~qkLI~~G 50 (274)
+|+|.. .-++.|+|..+.+..+|+++|.++.+ ++.+..+|-|+.
T Consensus 7 ~VKV~~--~~tvairvp~~~~y~~L~~~l~~kL~---l~~~~~~LsYk~ 50 (83)
T 1oey_A 7 TLKVHY--KYTVVMKTQPGLPYSQVRDMVSKKLE---LRLEHTKLSYRP 50 (83)
T ss_dssp EEEEES--SSEEEEEECTTCCHHHHHHHHHHHTT---CCGGGCCEEECC
T ss_pred EEEEEE--EEEEEEECCCCCCHHHHHHHHHHHhC---CCcceeEEEeeC
Confidence 455553 36889999999999999999999999 888999999976
No 184
>1ip9_A BEM1 protein; ubiquitin alpha/beta roll, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1ipg_A 2kfk_A
Probab=90.31 E-value=0.39 Score=35.67 Aligned_cols=41 Identities=15% Similarity=0.130 Sum_probs=31.9
Q ss_pred EEEEeC-CCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEe
Q 023989 3 LTVKTL-KGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIH 48 (274)
Q Consensus 3 I~VKtl-~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~~p~~~qkLI~ 48 (274)
++||.. ++-.|.|.|..+.+..+||.||..+.. + +...|++
T Consensus 13 ~KVK~yy~DDIiAIrvP~di~~~~L~dKi~~RLk---~--~~~~l~~ 54 (85)
T 1ip9_A 13 TKIKFYYKDDIFALMLKGDTTYKELRSKIAPRID---T--DNFKLQT 54 (85)
T ss_dssp EEEEECBTTCCEEEEECSCCCHHHHHHHHHHHHT---S--SCEEEEE
T ss_pred eEEEEEecCcEEEEECCCCCCHHHHHHHHHHHhc---c--cceEEEE
Confidence 445544 566899999999999999999999987 4 5555544
No 185
>3dwg_C 9.5 kDa culture filtrate antigen CFP10A; sulfur carrier protein complex, beta-grAsp fold, amino-acid biosynthesis; HET: PLP; 1.53A {Mycobacterium tuberculosis} PDB: 3dwm_A
Probab=90.08 E-value=0.96 Score=33.22 Aligned_cols=71 Identities=15% Similarity=0.162 Sum_probs=44.4
Q ss_pred CEEEEEeCC------CcEEEEEeCCCCCHHHHHHHHHHHhCC----------CCCCCCCeEEEeCCeecCCCCccccccc
Q 023989 1 MKLTVKTLK------GSHFEIRVQPSDTVMAVKKNIEDVQGK----------DNYPCGQQLLIHNGKVLKDETTLADNKV 64 (274)
Q Consensus 1 M~I~VKtl~------g~~~~ieV~~~~TV~~LK~kI~~~~g~----------~~~p~~~qkLI~~GK~L~D~~tL~d~~I 64 (274)
|+|+|+... |....+++ ...||.+|.+.+..++.. +.--.....+..+|+...+..-+ +.-|
T Consensus 1 M~v~V~~fa~lr~~~g~~~~~~~-~~~Tv~~ll~~L~~~~p~l~~~l~~~~~~g~~~~~~~v~VN~~~v~~~~~~-~~~L 78 (93)
T 3dwg_C 1 MNVTVSIPTILRPHTGGQKSVSA-SGDTLGAVISDLEANYSGISERLMDPSSPGKLHRFVNIYVNDEDVRFSGGL-ATAI 78 (93)
T ss_dssp -CEEEECCGGGGGGTTTCSEEEE-CCSBHHHHHHHHHHHSTTHHHHHBCSSSTTSBCTTEEEEETTEEGGGTTGG-GCBC
T ss_pred CEEEEEEeHHHHHHhCCCeEEec-CCCCHHHHHHHHHHHChhHHHHHhccccCCcccCCEEEEECCEEccCcCCC-CcCC
Confidence 788888542 33334665 457999999999887531 00001135677788877643222 4568
Q ss_pred CCCCeEEEE
Q 023989 65 SEDGFLVVM 73 (274)
Q Consensus 65 ~~~~~I~v~ 73 (274)
++||.|.++
T Consensus 79 ~~gDeV~i~ 87 (93)
T 3dwg_C 79 ADGDSVTIL 87 (93)
T ss_dssp CTTCEEEEE
T ss_pred CCCCEEEEE
Confidence 999999887
No 186
>1ef1_A Moesin; membrane, FERM domain, tail domain, membrane protein; 1.90A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1sgh_A 1j19_A 2emt_A 2ems_A 2d10_A 2d11_A 2yvc_A 2d2q_A 2zpy_A 1gc7_A 1gc6_A 1ni2_A
Probab=89.85 E-value=1.6 Score=38.50 Aligned_cols=74 Identities=18% Similarity=0.193 Sum_probs=55.1
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEe---CC--eecCCCCcccccccCCCCeEEEEec
Q 023989 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIH---NG--KVLKDETTLADNKVSEDGFLVVMLS 75 (274)
Q Consensus 1 M~I~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~~p~~~qkLI~---~G--K~L~D~~tL~d~~I~~~~~I~v~v~ 75 (274)
|.|.|..++| ++.++|+++.|+.+|=+.|....|. ...+..-|.| +| ..|+.++.|.+.+++.+..+.+..+
T Consensus 2 i~~~V~l~d~-~~~~~v~~~tt~~el~~~v~~~l~L--~e~~~FgL~~~~~~~~~~wLd~~~~l~~q~~~~~~~~~l~fr 78 (294)
T 1ef1_A 2 ISVRVTTMDA-ELEFAIQPNTTGKQLFDQVVKTIGL--REVWFFGLQYQDTKGFSTWLKLNKKVTAQDVRKESPLLFKFR 78 (294)
T ss_dssp EEEEEEETTE-EEEEEECTTCBHHHHHHHHHHHHTC--CCGGGEEEEEEBTTSCEEECCSSSBGGGSCBCCCSSEEEEEE
T ss_pred EEEEEEECCc-eEEEEECCCCcHHHHHHHHHHHcCC--CCcceeEEEEECCCCceeecccccCHHhhccCCCCCEEEEEE
Confidence 4688898988 6889999999999999999999993 2234455655 34 3477788888887766666666555
Q ss_pred cC
Q 023989 76 KS 77 (274)
Q Consensus 76 k~ 77 (274)
++
T Consensus 79 ~k 80 (294)
T 1ef1_A 79 AK 80 (294)
T ss_dssp ES
T ss_pred EE
Confidence 44
No 187
>1wgk_A Riken cDNA 2900073H19 protein; THis domain, ubiqutin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.3.3 PDB: 1xo3_A
Probab=89.24 E-value=0.4 Score=37.36 Aligned_cols=69 Identities=10% Similarity=0.084 Sum_probs=42.5
Q ss_pred CEEEEEeCC------C--cEEEEEeCC---CCCHHHHHHHHHHHhCCCCCCCCCeEEEeC-Ce------ecCCCCc---c
Q 023989 1 MKLTVKTLK------G--SHFEIRVQP---SDTVMAVKKNIEDVQGKDNYPCGQQLLIHN-GK------VLKDETT---L 59 (274)
Q Consensus 1 M~I~VKtl~------g--~~~~ieV~~---~~TV~~LK~kI~~~~g~~~~p~~~qkLI~~-GK------~L~D~~t---L 59 (274)
|+|+|+... | +.++|+++. ..||.+|...|.+.+. ..+-+|+.. |+ +|-|+.. |
T Consensus 12 M~v~V~~~~~Lr~~~g~~~~~~vel~~~~~~~TV~~Ll~~L~~~~~-----~~~~~lf~~~g~lr~~i~VlVN~~di~~l 86 (114)
T 1wgk_A 12 LCVKVEFGGGAELLFDGVKKHQVALPGQEEPWDIRNLLVWIKKNLL-----KERPELFIQGDSVRPGILVLINDADWELL 86 (114)
T ss_dssp EEEEEEECTTTGGGTTTCSEEEEEECCCSSCCBHHHHHHHHTTTTC-----CSCHHHHCCSSSCCSSEEEEESSSBHHHH
T ss_pred cEEEEEEchHHHHHhCCceEEEEEeCCCCCCCCHHHHHHHHHHHcc-----chhHhhCccCCcccCCeEEEECCeeeecc
Confidence 678887543 3 356788883 3699999999988752 233344322 22 2323332 1
Q ss_pred --cccccCCCCeEEEEe
Q 023989 60 --ADNKVSEDGFLVVML 74 (274)
Q Consensus 60 --~d~~I~~~~~I~v~v 74 (274)
.++-|++||.|.++-
T Consensus 87 ~gldt~L~dGDeV~iip 103 (114)
T 1wgk_A 87 GELDYQLQDQDSILFIS 103 (114)
T ss_dssp CTTTCBCCSSEEEEEEE
T ss_pred CCcCcCCCCCCEEEEeC
Confidence 357799999988763
No 188
>1h4r_A Merlin; FERM, neurofibromatosis, NF2, structural protein, cytoskeleton, anti-oncogene; 1.8A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1isn_A 3u8z_A
Probab=89.16 E-value=1.8 Score=38.63 Aligned_cols=74 Identities=12% Similarity=0.034 Sum_probs=54.7
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEe--CCe--ecCCCCcccccccCCCCeEEEEecc
Q 023989 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIH--NGK--VLKDETTLADNKVSEDGFLVVMLSK 76 (274)
Q Consensus 1 M~I~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~~p~~~qkLI~--~GK--~L~D~~tL~d~~I~~~~~I~v~v~k 76 (274)
|.+.|..++| ++.++|+.+.|+.+|=+.|....|. ...+..-|.| +|. .|+.++.|.+.+++.+..+.+..++
T Consensus 23 ~~~~V~lldg-~~~~~v~~~t~~~el~~~v~~~l~L--~e~~~FgL~~~~~~~~~wL~~~~~i~~q~~~~~~~~~l~fr~ 99 (314)
T 1h4r_A 23 FTVRIVTMDA-EMEFNCEMKWKGKDLFDLVCRTLGL--RETWFFGLQYTIKDTVAWLKMDKKVLDHDVSKEEPVTFHFLA 99 (314)
T ss_dssp EEEEEECSSC-EEEEEEETTCBHHHHHHHHHHHHTC--CCGGGEEEEEEETTEEEECCTTSBGGGSSCCCSSSEEEEEEE
T ss_pred eEEEEEeCCc-eEEEEeCCCCcHHHHHHHHHHHhCC--CCCccceEEEEeCCcCeeCCCccCHHHcCCCCCCCEEEEEEE
Confidence 3578888898 7889999999999999999999993 2234445555 443 3788888988877666655555554
Q ss_pred C
Q 023989 77 S 77 (274)
Q Consensus 77 ~ 77 (274)
+
T Consensus 100 k 100 (314)
T 1h4r_A 100 K 100 (314)
T ss_dssp S
T ss_pred E
Confidence 3
No 189
>1tyg_B YJBS; alpha beta barrel, protein-protein complex, THis, BIOS protein; 3.15A {Bacillus subtilis} SCOP: d.15.3.2
Probab=89.00 E-value=0.59 Score=34.72 Aligned_cols=56 Identities=9% Similarity=0.232 Sum_probs=40.9
Q ss_pred CCCcEEEEEeCCC-CCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCcccccccCCCCeEEEE
Q 023989 8 LKGSHFEIRVQPS-DTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVM 73 (274)
Q Consensus 8 l~g~~~~ieV~~~-~TV~~LK~kI~~~~g~~~~p~~~qkLI~~GK~L~D~~tL~d~~I~~~~~I~v~ 73 (274)
++|+. ++++.. .||.+|.+.+ + ++.....+..+|+++..+ ...+.-|++||.|-++
T Consensus 25 vNGe~--~el~~~~~Tv~dLL~~L----~---~~~~~vaVavNg~iV~~~-~~~~~~L~dGD~Vei~ 81 (87)
T 1tyg_B 25 LNGKD--VKWKKDTGTIQDLLASY----Q---LENKIVIVERNKEIIGKE-RYHEVELCDRDVIEIV 81 (87)
T ss_dssp ETTEE--ECCSSSCCBHHHHHHHT----T---CTTSCCEEEETTEEECGG-GTTTSBCCSSSEEEEE
T ss_pred ECCEE--EECCCCCCcHHHHHHHh----C---CCCCCEEEEECCEECChh-hcCCcCCCCCCEEEEE
Confidence 35654 455666 8999998875 5 566777888999998643 3445568999999887
No 190
>1tte_A Ubiquitin-conjugating enzyme E2-24 kDa; UBC1, ubiquitin-dependent degradation, ligase; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1 d.20.1.1
Probab=88.71 E-value=0.42 Score=41.33 Aligned_cols=25 Identities=16% Similarity=0.365 Sum_probs=22.4
Q ss_pred HHHHHHHHHcCCCCCCHHHHHHHHHHhc
Q 023989 154 EQTIQQIMDMGGGTWDKETVTRALQAAY 181 (274)
Q Consensus 154 e~~i~~i~eMG~~~f~r~qv~~ALrAaf 181 (274)
+..|+++++|| |+|+.|+.||+-.-
T Consensus 170 ~~~v~~~~~mg---~~~~~~~~al~~~~ 194 (215)
T 1tte_A 170 HDLIDEFESQG---FEKDKIVEVLRRLG 194 (215)
T ss_dssp HHHHHHHHHHT---CCHHHHHHHHHHSC
T ss_pred HHHHHHHHHcC---CCHHHHHHHHHHcC
Confidence 67999999999 99999999997543
No 191
>2juo_A GA-binding protein alpha chain; OST, ubiquitin, transcription factor, ensemble, DNA-binding, nucleus, transcription regulation; NMR {Mus musculus}
Probab=88.46 E-value=1.4 Score=32.65 Aligned_cols=59 Identities=15% Similarity=0.178 Sum_probs=50.9
Q ss_pred EEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCcccccccCCCCeEEEEec
Q 023989 14 EIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVMLS 75 (274)
Q Consensus 14 ~ieV~~~~TV~~LK~kI~~~~g~~~~p~~~qkLI~~GK~L~D~~tL~d~~I~~~~~I~v~v~ 75 (274)
.-.++-..++..||+.++.+.| +.-+...+...+..|+++++|-+-+|+-...|.+.+-
T Consensus 6 ~qhmDI~epL~~Lk~LLe~Rl~---i~L~~y~f~LQd~~L~~~k~LvdQcVqgeGlVQinvq 64 (89)
T 2juo_A 6 SQAIDINEPIGNLKKLLEPRLQ---CSLDAHEICLQDIQLDPDRSLFDQGVKTDGTVQLSVQ 64 (89)
T ss_dssp EEEEESSSBGGGHHHHSHHHHC---SCCSSCEEEETTEECCTTSBTTTSSCCCCSEEEEEEE
T ss_pred hhhccccCcHHHHHHHHHHHhc---CCcccCeEEeeccccCCCccHHHhhcccccEEEEEEE
Confidence 3456678899999999999999 7788888888898899999999999998888877764
No 192
>3kuz_A Plexin-C1; structural genomics, structural genomics consortium, SGC; 2.30A {Homo sapiens}
Probab=88.43 E-value=1.4 Score=34.97 Aligned_cols=60 Identities=25% Similarity=0.289 Sum_probs=41.2
Q ss_pred cEEEEEeCCCCCHHHHHHHHHHHh----CCCCCC----CCCeEEEe-CC---eecCC----------C----Cccccccc
Q 023989 11 SHFEIRVQPSDTVMAVKKNIEDVQ----GKDNYP----CGQQLLIH-NG---KVLKD----------E----TTLADNKV 64 (274)
Q Consensus 11 ~~~~ieV~~~~TV~~LK~kI~~~~----g~~~~p----~~~qkLI~-~G---K~L~D----------~----~tL~d~~I 64 (274)
..+.+.|-.-+||.++|+||-... + +| ++.+.|-+ .| ++|.| . .||..|+|
T Consensus 39 ~~v~VkVLdCDTItQVKEKILdavYk~k~---~pys~r~~d~dLEwr~g~~~~~L~D~D~tS~~~e~~wkrLNTL~HY~V 115 (126)
T 3kuz_A 39 RNISVNVLDCDTIGQAKEKIFQAFLSKNG---SPYGLQLNEIGLELQMGTRQKELLDIDSSSVILEDGITKLNTIGHYEI 115 (126)
T ss_dssp CEEEEEEETTCBHHHHHHHHHHHHHHHHS---SCCSSCGGGEEEEEEETTEEEEECSSCTTCCBCTTSCBCCCBTGGGTC
T ss_pred CceEeeeecCCcHHHHHHHHHHHHhccCC---CcCCCCccccceEEecCCCcceeeccCCcceEecCCeeEeccccccCC
Confidence 467888889999999999987553 4 43 33445544 12 33432 1 36778999
Q ss_pred CCCCeEEEE
Q 023989 65 SEDGFLVVM 73 (274)
Q Consensus 65 ~~~~~I~v~ 73 (274)
.+|.+|-++
T Consensus 116 ~Dgatlal~ 124 (126)
T 3kuz_A 116 SNGSTIKVF 124 (126)
T ss_dssp CTTCEEEEE
T ss_pred CCCCEEEEe
Confidence 999999765
No 193
>1p3q_Q VPS9P, vacuolar protein sorting-associated protein VPS9; trafficking, post translational modification, mono- ubiquitination; 1.70A {Saccharomyces cerevisiae} SCOP: a.5.2.4 PDB: 1mn3_A
Probab=87.75 E-value=0.22 Score=33.93 Aligned_cols=42 Identities=24% Similarity=0.219 Sum_probs=31.5
Q ss_pred CchHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCHHHHHHHHHc
Q 023989 151 NDLEQTIQQIMDMGGGTWDKETVTRALQAAYNNPERAVDYLYS 193 (274)
Q Consensus 151 ~~~e~~i~~i~eMG~~~f~r~qv~~ALrAafnNpdrAvEyL~~ 193 (274)
.+.++.|++|.+|= -.+|||-++..|++--+|.|-||+.||.
T Consensus 10 ~e~~~~~~~L~~MF-P~lD~evI~~Vl~a~~G~~~~~IdaLLq 51 (54)
T 1p3q_Q 10 NERKDTLNTLQNMF-PDMDPSLIEDVCIAAASRIGPCVDALLS 51 (54)
T ss_dssp HHHHHHHHHHHHHS-TTSCHHHHHHHHHHSCC--CGGGC----
T ss_pred HHHHHHHHHHHHHc-ccCCHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 35789999999992 1189999999999999999999999873
No 194
>3ivf_A Talin-1; FERM domain, cell membrane, cell projection, cytoskeleton, M phosphoprotein, cell adhesion, structural protein; 1.94A {Mus musculus} PDB: 2kma_A 2kc1_A
Probab=86.43 E-value=2.9 Score=38.29 Aligned_cols=72 Identities=24% Similarity=0.207 Sum_probs=54.0
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCC---------eecCCCCcccccccCCCCeEE
Q 023989 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNG---------KVLKDETTLADNKVSEDGFLV 71 (274)
Q Consensus 1 M~I~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~~p~~~qkLI~~G---------K~L~D~~tL~d~~I~~~~~I~ 71 (274)
+.+.|..++|....++|+.+.|+.+|-+.|..+.|. ...+..-|.+.. +-|+-+++|.+.++.....++
T Consensus 86 ~~~~V~l~dg~~~~~~vd~~tt~~el~~~v~~~l~L--~e~~~FgL~~~~~~~~~~~~~~wL~~~k~l~~q~~~~~~~l~ 163 (371)
T 3ivf_A 86 RPLKIRMLDGTVKTIMVDDSKTVTDMLMTICARIGI--TNHDEYSLVRELMEEKKDDELNWLDHGRTLREQGVEEHETLL 163 (371)
T ss_dssp EEEEEECTTSCEEEEEEETTSBHHHHHHHHHHHTTC--SCGGGEEEECCC----------CCCTTSBTGGGTCCTTCEEE
T ss_pred eEEEEECcCCCEEEEEECCCCCHHHHHHHHHHHcCC--CCccccEEEEEecccccchHHHHHhcCchhHhhCCCCCceEE
Confidence 357889999999999999999999999999999994 335566776642 335667778777766656655
Q ss_pred EEe
Q 023989 72 VML 74 (274)
Q Consensus 72 v~v 74 (274)
+.+
T Consensus 164 frv 166 (371)
T 3ivf_A 164 LRR 166 (371)
T ss_dssp EEE
T ss_pred EEE
Confidence 544
No 195
>3onh_A Ubiquitin-activating enzyme E1-like; ligase, SUMO conjugation, UBC9; 1.60A {Saccharomyces cerevisiae} PDB: 3ong_A
Probab=86.38 E-value=2.1 Score=34.01 Aligned_cols=57 Identities=18% Similarity=0.310 Sum_probs=41.5
Q ss_pred EEEeCC----CCCHHHHHHHHHHHhCCCCCCCCCeEEEe--CCeec-----CC--CCcccccccCCCCeEEEEe
Q 023989 14 EIRVQP----SDTVMAVKKNIEDVQGKDNYPCGQQLLIH--NGKVL-----KD--ETTLADNKVSEDGFLVVML 74 (274)
Q Consensus 14 ~ieV~~----~~TV~~LK~kI~~~~g~~~~p~~~qkLI~--~GK~L-----~D--~~tL~d~~I~~~~~I~v~v 74 (274)
.|.|+. ..|+.+|-+.|..+.| +. +.+.++- ..+.| +| +++|.++||++|++|.|+=
T Consensus 9 vl~v~~~dl~~~TL~dLV~~l~~~~g---y~-~eiSV~~~~~~rLLyD~DfDDnl~k~L~dLgv~~gsfLtv~D 78 (127)
T 3onh_A 9 VIKLSSDCLNKMKLSDFVVLIREKYS---YP-QDISLLDASNQRLLFDYDFEDLNDRTLSEINLGNGSIILFSD 78 (127)
T ss_dssp EEEECHHHHHHCBHHHHHHHHHHHHT---CC-SSEEEEETTTTEEEEETTBCTTTTSBTTTTTCCTTCEEEEEE
T ss_pred EEEeCcccccccCHHHHHHHHHHhcC---CC-CcEEEEecCCCCeEeCCCccccccCcHHHcCcCCCcEEEEEc
Confidence 455653 4799999888988888 64 3555542 33554 33 5899999999999998874
No 196
>3hm6_X Plexin-B1; structural genomics consortium, SGC, membrane, transmembrane receptor, cell membrane, glycoprotein, phosphoprotein; 2.40A {Homo sapiens} PDB: 3sua_D* 3su8_X*
Probab=86.21 E-value=2.5 Score=42.06 Aligned_cols=64 Identities=23% Similarity=0.274 Sum_probs=45.3
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHhCCCCCC------CCCeEEEe----CCe-ecCCC-------------CcccccccCCC
Q 023989 12 HFEIRVQPSDTVMAVKKNIEDVQGKDNYP------CGQQLLIH----NGK-VLKDE-------------TTLADNKVSED 67 (274)
Q Consensus 12 ~~~ieV~~~~TV~~LK~kI~~~~g~~~~p------~~~qkLI~----~GK-~L~D~-------------~tL~d~~I~~~ 67 (274)
.+.+.|-..+||.++|+||-+..-++ +| ++.+.|-+ .|+ +|.|. .||..|+|.+|
T Consensus 275 ~i~VkVLdCDTItQVKeKiLDavYk~-~pyS~rP~~~~~dLEwr~g~~g~~iL~D~D~ts~~~~~wkrLNTL~HY~V~dg 353 (644)
T 3hm6_X 275 GVPVKVLDCDTISQAKEKMLDQLYKG-VPLTQRPDPRTLDVEWRSGVAGHLILSDEDVTSEVQGLWRRLNTLQHYKVPDG 353 (644)
T ss_dssp CEEEEEETTSBHHHHHHHHHHHHTTT-SCGGGSCCGGGEEEEEECSSSCEEEECSSSTTCCEETTEEECCBTTTTTCCTT
T ss_pred ceeeEeeccCcHHHHHHHHHHHHHcC-CCcccCCCCCCcceEEeeCCCCceeecccCccceecCcceeecchhhcCCCCC
Confidence 47788889999999999999765332 43 34555655 233 46553 38999999999
Q ss_pred CeEEEEecc
Q 023989 68 GFLVVMLSK 76 (274)
Q Consensus 68 ~~I~v~v~k 76 (274)
.+|.++-+.
T Consensus 354 a~v~L~p~~ 362 (644)
T 3hm6_X 354 ATVALVPCL 362 (644)
T ss_dssp CEEEEEEC-
T ss_pred cEEEEEecc
Confidence 999876443
No 197
>2kmm_A Guanosine-3',5'-BIS(diphosphate) 3'- pyrophosphohydrolase; methods development, TGS domain, predominantly beta-sheet structure; NMR {Porphyromonas gingivalis}
Probab=86.16 E-value=2 Score=29.74 Aligned_cols=63 Identities=19% Similarity=0.098 Sum_probs=41.4
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCcccccccCCCCeEEEEec
Q 023989 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVMLS 75 (274)
Q Consensus 1 M~I~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~~p~~~qkLI~~GK~L~D~~tL~d~~I~~~~~I~v~v~ 75 (274)
|+|+|+..+|+. +++....|+.+|-+.|....+ ....-...+|++.+-+ +-|++|+.|-++-.
T Consensus 1 m~i~i~~p~g~~--~~~~~g~T~~dla~~i~~~l~-----~~~vaa~vNg~lvdl~-----~~L~~~~~Veivt~ 63 (73)
T 2kmm_A 1 MEVMVFTPKGEI--KRLPQGATALDFAYSLHSDLG-----DHCIGAKVNHKLVPLS-----YVLNSGDQVEVLSS 63 (73)
T ss_dssp CCEEEECTTCCE--EEECTTCBHHHHHHHHCSHHH-----HTEEEEEETTEECCTT-----CBCCSSSBEEEEEC
T ss_pred CeEEEEcCCCCE--EEcCCCCcHHHHHHHHhhccc-----cceEEEEECCEEeCCC-----cCcCCCCEEEEEEC
Confidence 788898768876 566788999999888744332 1122234688876554 44566787777643
No 198
>2qjl_A URM1, ubiquitin-related modifier 1; ubiquitin-like protein, signaling protein; 1.44A {Saccharomyces cerevisiae} PDB: 2pko_A 2ax5_A
Probab=86.14 E-value=1.2 Score=33.30 Aligned_cols=35 Identities=17% Similarity=0.135 Sum_probs=25.9
Q ss_pred CEEEEEeCC-------C-cEEEEEeC--CCCCHHHHHHHHHHHhC
Q 023989 1 MKLTVKTLK-------G-SHFEIRVQ--PSDTVMAVKKNIEDVQG 35 (274)
Q Consensus 1 M~I~VKtl~-------g-~~~~ieV~--~~~TV~~LK~kI~~~~g 35 (274)
|+|+||... | +.+++++. ...||.+|.+.+.++..
T Consensus 2 M~i~V~~fa~lre~~~g~~~~~~~l~~~~~~Tv~~L~~~L~~~~~ 46 (99)
T 2qjl_A 2 VNVKVEFLGGLDAIFGKQRVHKIKMDKEDPVTVGDLIDHIVSTMI 46 (99)
T ss_dssp EEEEEEEETTGGGGTTTCCEEEEEECSCSCCBHHHHHHHHHHHTC
T ss_pred cEEEEEEchHHHHHhCCCcEEEEecCCCCCCcHHHHHHHHHHHCc
Confidence 578877432 2 45677776 67899999999998863
No 199
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=86.09 E-value=2.3 Score=41.84 Aligned_cols=75 Identities=16% Similarity=0.119 Sum_probs=56.1
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeC---C--eecCCCCcccccccCCCCeEEEEec
Q 023989 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHN---G--KVLKDETTLADNKVSEDGFLVVMLS 75 (274)
Q Consensus 1 M~I~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~~p~~~qkLI~~---G--K~L~D~~tL~d~~I~~~~~I~v~v~ 75 (274)
|.|.|..++| ++.|.|+++.|+.+|=..|+...|. ...+..-|.|. | ..|+.++.|.+.+++.+..+.+.++
T Consensus 5 i~v~V~llDg-t~e~~vd~~tt~~ell~~V~~~LgL--~e~~~FGL~~~d~~~~~~WLd~~k~i~~q~~~~~~~~~L~FR 81 (575)
T 2i1j_A 5 MNVRVTTMDA-ELEFAIQQTTTGKQLFDQVVKTIGL--REVWFFGLQYTDSKGDLTWIKLYKKVMQQDVKKENPLQFKFR 81 (575)
T ss_dssp EEEEEECSSC-EEEEEEETTCBHHHHHHHHHHHHTC--CCGGGEEEEEEBTTSCEEECCTTSBGGGSCBCCCSSEEEEEE
T ss_pred EEEEEEeCCC-eEEEEECCCCCHHHHHHHHHHHcCC--CCccceeEEEEecCcchhHhhccccHHHhcccCCCCeEEEEE
Confidence 4678888888 7889999999999999999999993 23345566553 2 4577788888887777766666655
Q ss_pred cCC
Q 023989 76 KSK 78 (274)
Q Consensus 76 k~k 78 (274)
++-
T Consensus 82 vkf 84 (575)
T 2i1j_A 82 AKF 84 (575)
T ss_dssp ESS
T ss_pred EEE
Confidence 543
No 200
>2k9x_A Tburm1, uncharacterized protein; unknown function; NMR {Trypanosoma brucei}
Probab=85.73 E-value=0.23 Score=38.55 Aligned_cols=69 Identities=9% Similarity=0.082 Sum_probs=42.0
Q ss_pred CEEEEEeCC------CcEEEEEeCC----CCCHHHHHHHHHHHhCCCCCCCCCeEEEeC-C--e------ecCCCCcc--
Q 023989 1 MKLTVKTLK------GSHFEIRVQP----SDTVMAVKKNIEDVQGKDNYPCGQQLLIHN-G--K------VLKDETTL-- 59 (274)
Q Consensus 1 M~I~VKtl~------g~~~~ieV~~----~~TV~~LK~kI~~~~g~~~~p~~~qkLI~~-G--K------~L~D~~tL-- 59 (274)
|+|+||... |+..+++++. ..||.+|-..|.+... ..+-+|+.. | + +|-|+..+
T Consensus 5 m~v~V~f~g~l~~l~g~~~~v~l~~~~g~~~TV~dLl~~L~~~~~-----~~r~~lf~~~g~~~lrpgIlVLVNg~d~e~ 79 (110)
T 2k9x_A 5 NHITVQFAGGCELLFAKQTSLQLDGVVPTGTNLNGLVQLLKTNYV-----KERPDLLVDQTGQTLRPGILVLVNSCDAEV 79 (110)
T ss_dssp SCCEEEEESSCGGGTTSCSEECCCCSCGGGCCHHHHHHHHTTTTC-----CSCHHHHBCSSSSSBCTTEEEEESSSBHHH
T ss_pred cEEEEEEEecHHHHhCCeEEEEeCCcCCCCccHHHHHHHHHHHcc-----ccchhhEecCCCcccCCCeEEEECCeeeec
Confidence 677777554 3545677763 2499999888887743 334444322 3 1 34344333
Q ss_pred ---cccccCCCCeEEEEe
Q 023989 60 ---ADNKVSEDGFLVVML 74 (274)
Q Consensus 60 ---~d~~I~~~~~I~v~v 74 (274)
.+|-+++||.|.++-
T Consensus 80 l~gldt~L~dgD~V~fis 97 (110)
T 2k9x_A 80 VGGMDYVLNDGDTVEFIS 97 (110)
T ss_dssp HTSSCCCCCSSCEEEEEE
T ss_pred cCCcccCCCCcCEEEEeC
Confidence 346799999987753
No 201
>3ig3_A Plxna3 protein; plexin intracellular GAP RBD inactive, membrane, transmembra membrane protein, signaling protein; 1.99A {Mus musculus} PDB: 3ryt_A*
Probab=85.63 E-value=3.4 Score=40.92 Aligned_cols=65 Identities=20% Similarity=0.354 Sum_probs=46.4
Q ss_pred cEEEEEeCCCCCHHHHHHHHHHHhCCCCCC------CCCeEEEe----CCe-ecCCC-------------CcccccccCC
Q 023989 11 SHFEIRVQPSDTVMAVKKNIEDVQGKDNYP------CGQQLLIH----NGK-VLKDE-------------TTLADNKVSE 66 (274)
Q Consensus 11 ~~~~ieV~~~~TV~~LK~kI~~~~g~~~~p------~~~qkLI~----~GK-~L~D~-------------~tL~d~~I~~ 66 (274)
..+.+.|-..+||.++|+||-+..-++ .| ++.+.|-+ .|+ +|.|. .||..|+|.+
T Consensus 247 ~~i~vkVLdCDTItQVKeKiLdavYk~-~pyS~rP~~~~~dLEwr~g~~g~~iL~D~D~ts~~~~~wkrLNTL~HY~V~D 325 (627)
T 3ig3_A 247 AQVPVKVLNCDSITQAKDKLLDTVYKG-IPYSQRPKAEDMDLEWRQGRMARIILQDEDITTKIECDWKRVNSLAHYQVTD 325 (627)
T ss_dssp CEEEEEEETTCBHHHHHHHHHHHHTTT-SCGGGSCCGGGEEEEEESCSSCEEEECSSSTTCCEETTEEECCBTTTTTCCT
T ss_pred CceeeEeeccCcHHHHHHHHHHHHHcC-CCcccCCCCCccceeEeeCCCCceeeccCCccccccCceeEecchhhcCCCC
Confidence 457788889999999999999876432 33 34566654 233 45542 3788999999
Q ss_pred CCeEEEEecc
Q 023989 67 DGFLVVMLSK 76 (274)
Q Consensus 67 ~~~I~v~v~k 76 (274)
|.+|.++-+.
T Consensus 326 ga~v~L~p~~ 335 (627)
T 3ig3_A 326 GSLVALVPKQ 335 (627)
T ss_dssp TCEEEEEEC-
T ss_pred CceEEEEecc
Confidence 9999987544
No 202
>1ufz_A Hypothetical protein BAB28515; HBS1-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, translatio; NMR {Mus musculus} SCOP: a.5.9.1
Probab=85.59 E-value=1.9 Score=31.81 Aligned_cols=42 Identities=12% Similarity=0.196 Sum_probs=35.5
Q ss_pred hHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCHHHHHHHHHcC
Q 023989 153 LEQTIQQIMDMGGGTWDKETVTRALQAAYNNPERAVDYLYSG 194 (274)
Q Consensus 153 ~e~~i~~i~eMG~~~f~r~qv~~ALrAafnNpdrAvEyL~~G 194 (274)
+..-+.+|-+.=|.+.++.+.+.|.-.+.+|++||+.|+|+.
T Consensus 34 L~SCLd~iR~VlGdsV~e~~Lv~ailk~dfD~ekALd~vL~~ 75 (83)
T 1ufz_A 34 LYSCLDHMREVLGDAVPDDILTEAILKHKFDVQKALSVVLEQ 75 (83)
T ss_dssp HHHHHHHHHHHTTTTSCHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccCCHHHHHHHHHHhcCCHHHHHHHHHhc
Confidence 455577788866688999999999999999999999999964
No 203
>3qij_A Protein 4.1; cytoskeleton, structural genomics, structural genomics conso SGC; 1.80A {Homo sapiens} PDB: 1gg3_A 3bin_A 2he7_A 2rq1_A
Probab=85.22 E-value=3.2 Score=37.00 Aligned_cols=71 Identities=10% Similarity=-0.068 Sum_probs=50.6
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeC---C--eecCCCCcccccccCCCCeEEEE
Q 023989 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHN---G--KVLKDETTLADNKVSEDGFLVVM 73 (274)
Q Consensus 1 M~I~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~~p~~~qkLI~~---G--K~L~D~~tL~d~~I~~~~~I~v~ 73 (274)
|.+.|..++|....++|+...|+.+|=+.|..+.|. ...+..-|.|. | ..|+.++.|.+........+++.
T Consensus 18 ~~~~V~lldgt~~~~~vd~~tt~~el~~~v~~~l~L--~e~~~FgL~~~~~~~~~~wLd~~k~i~~q~~~~~~~l~fr 93 (296)
T 3qij_A 18 GHCKVSLLDDTVYECVVEKHAKGQDLLKRVCEHLNL--LEEDYFGLAIWDNATSKTWLDSAKEIKKQVRGVPWNFTFN 93 (296)
T ss_dssp CEEEEECTTSCEEEEECCTTCBHHHHHHHHHHHHTC--SSGGGEEEEEEEETTEEEECCTTSBHHHHC---CCEEEEE
T ss_pred EEEEEEccCCCEEEEEECCCCCHHHHHHHHHHHcCC--CCcceeEEEEEcCCCccchhccchhHHHhcCCCCcEEEEE
Confidence 568899999999999999999999999999999993 23444566553 3 34777788877643333344443
No 204
>1ixs_A Holliday junction DNA helicase RUVA; heterodimeric protein complex, AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ANP; 3.20A {Thermus thermophilus} SCOP: a.5.1.1
Probab=84.96 E-value=0.81 Score=31.78 Aligned_cols=28 Identities=7% Similarity=0.266 Sum_probs=24.7
Q ss_pred CCchHHHHHHHHHcCCCCCCHHHHHHHHHHh
Q 023989 150 GNDLEQTIQQIMDMGGGTWDKETVTRALQAA 180 (274)
Q Consensus 150 g~~~e~~i~~i~eMG~~~f~r~qv~~ALrAa 180 (274)
+...++.|.-|+.+| |.+.++.+|++..
T Consensus 14 ~~~~~ea~~AL~aLG---Y~~~ea~kav~~v 41 (62)
T 1ixs_A 14 SEAAEEAVMALAALG---FKEAQARAVVLDL 41 (62)
T ss_dssp CHHHHHHHHHHHHTT---CCHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHcC---CCHHHHHHHHHHH
Confidence 445688999999999 9999999999875
No 205
>1f0z_A THis protein; ubiquitin fold, transport protein; NMR {Escherichia coli} SCOP: d.15.3.2 PDB: 1zud_2
Probab=84.77 E-value=0.81 Score=31.63 Aligned_cols=60 Identities=13% Similarity=0.229 Sum_probs=42.0
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCcccccccCCCCeEEEE
Q 023989 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVM 73 (274)
Q Consensus 1 M~I~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~~p~~~qkLI~~GK~L~D~~tL~d~~I~~~~~I~v~ 73 (274)
|+|+| +|+.+ ++....||.+|.+.+ + ++.....+..+|+++..+ ...+.-+++||.|.++
T Consensus 1 m~i~v---Ng~~~--~~~~~~tv~~ll~~l----~---~~~~~v~vavN~~~v~~~-~~~~~~L~~gD~v~i~ 60 (66)
T 1f0z_A 1 MQILF---NDQAM--QCAAGQTVHELLEQL----D---QRQAGAALAINQQIVPRE-QWAQHIVQDGDQILLF 60 (66)
T ss_dssp CCEEE---SSCEE--CCCTTCCHHHHHHHH----T---CCCSSEEEEETTEEECHH-HHTTCCCCTTEEECEE
T ss_pred CEEEE---CCEEE--EcCCCCcHHHHHHHc----C---CCCCCEEEEECCEECCch-hcCCcCCCCCCEEEEE
Confidence 55544 46654 556778999999876 4 556777888899988642 1233458889998876
No 206
>2k5p_A THis protein, thiamine-biosynthesis protein; NESG, GMR137, structural genomics, PSI-2, protein structure initiative; NMR {Geobacter metallireducens gs-15} PDB: 3cwi_A
Probab=84.50 E-value=1.1 Score=32.50 Aligned_cols=61 Identities=23% Similarity=0.248 Sum_probs=43.9
Q ss_pred CEEEEEeCCCcEEEEEeC--CCCCHHHHHHHHHHHhCCCCCC-CCCeEEEeCCeecCCCCcccccccCCCCeEEEEe
Q 023989 1 MKLTVKTLKGSHFEIRVQ--PSDTVMAVKKNIEDVQGKDNYP-CGQQLLIHNGKVLKDETTLADNKVSEDGFLVVML 74 (274)
Q Consensus 1 M~I~VKtl~g~~~~ieV~--~~~TV~~LK~kI~~~~g~~~~p-~~~qkLI~~GK~L~D~~tL~d~~I~~~~~I~v~v 74 (274)
|+|+| +|+.+ +++ ...||.+|-+. .+ ++ ....-+.++|.++..+ ...++-+++||.|-++-
T Consensus 1 M~I~v---NGe~~--e~~~~~~~Tl~~LL~~----l~---~~~~~~vAVavNg~iVpr~-~~~~~~L~dGD~IEIv~ 64 (78)
T 2k5p_A 1 MNLTV---NGKPS--TVDGAESLNVTELLSA----LK---VAQAEYVTVELNGEVLERE-AFDATTVKDGDAVEFLY 64 (78)
T ss_dssp CEEEE---TTEEE--ECSSCSCEEHHHHHHH----HT---CSCTTTCCEEETTEECCTT-HHHHCEECSSBCEEECC
T ss_pred CEEEE---CCEEE--EcCCCCCCcHHHHHHH----cC---CCCCCcEEEEECCEECChH-HcCcccCCCCCEEEEEe
Confidence 66654 47654 455 66899998775 45 66 6777788999998643 45666789999998773
No 207
>2kl0_A Putative thiamin biosynthesis THis; structural genomics, PSI-2, protein structure initiative, N structural genomics consortium, NESG; NMR {Rhodopseudomonas palustris} PDB: 2lek_A
Probab=83.97 E-value=1.1 Score=32.01 Aligned_cols=60 Identities=20% Similarity=0.242 Sum_probs=42.9
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCcccccccCCCCeEEEEe
Q 023989 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVML 74 (274)
Q Consensus 1 M~I~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~~p~~~qkLI~~GK~L~D~~tL~d~~I~~~~~I~v~v 74 (274)
|+|+| +|+.+. + ...||.+|-+. .+ ++....-+.++|.++..+ ...+.-+++||.|-++-
T Consensus 1 M~I~v---NG~~~e--~-~~~Tl~~LL~~----l~---~~~~~vAV~vNg~iVpr~-~~~~~~L~dGD~veIv~ 60 (73)
T 2kl0_A 1 MLVTI---NGEQRE--V-QSASVAALMTE----LD---CTGGHFAVALNYDVVPRG-KWDETPVTAGDEIEILT 60 (73)
T ss_dssp CCEEE---TTEEEC--C-CCSBHHHHHHH----TT---CCSSSCEEEESSSEECHH-HHTTCBCCTTCEEEEEC
T ss_pred CEEEE---CCEEEE--c-CCCcHHHHHHH----cC---CCCCcEEEEECCEECChH-HcCcccCCCCCEEEEEc
Confidence 55544 476554 4 56899998764 56 777888888999998533 34556788999998873
No 208
>1aip_C EF-TS, elongation factor TS; nucleotide exchange, GTP-binding, complex of two elongation factors; 3.00A {Thermus thermophilus} SCOP: a.5.2.2 d.43.1.1
Probab=83.97 E-value=1.3 Score=37.77 Aligned_cols=36 Identities=31% Similarity=0.334 Sum_probs=32.7
Q ss_pred HHHHHHHHHc-CCCCCCHHHHHHHHHHhcCCHHHHHHHHH
Q 023989 154 EQTIQQIMDM-GGGTWDKETVTRALQAAYNNPERAVDYLY 192 (274)
Q Consensus 154 e~~i~~i~eM-G~~~f~r~qv~~ALrAafnNpdrAvEyL~ 192 (274)
-.+|.+|-++ | ..=-+|..||..+.+|.|.|+|||-
T Consensus 4 a~~VKeLRe~TG---agmmdCKkAL~e~~GD~ekAie~LR 40 (196)
T 1aip_C 4 MELIKKLREATG---AGMMDVKRALEDAGWDEEKAVQLLR 40 (196)
T ss_dssp HHHHHHHHHHHC---CCHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred HHHHHHHHHHhC---CCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 3678999998 7 8888999999999999999999996
No 209
>2l52_A Methanosarcina acetivorans SAMP1 homolog; beta-grAsp fold, protein binding, E1-like, SAMP activator, ELSA, adenylation, ubiquitin; NMR {Methanosarcina acetivorans}
Probab=83.51 E-value=4.7 Score=30.04 Aligned_cols=69 Identities=12% Similarity=0.167 Sum_probs=42.0
Q ss_pred CEEEEEeCC------C-cEEEEEeCCCCCHHHHHHHHHHHhCC--CCCC-C----CCe-------EEEeCCeecCCCCcc
Q 023989 1 MKLTVKTLK------G-SHFEIRVQPSDTVMAVKKNIEDVQGK--DNYP-C----GQQ-------LLIHNGKVLKDETTL 59 (274)
Q Consensus 1 M~I~VKtl~------g-~~~~ieV~~~~TV~~LK~kI~~~~g~--~~~p-~----~~q-------kLI~~GK~L~D~~tL 59 (274)
|+|+||... | +.++++ ..||.+|.+.+...... +.+- . ... .+..+|+...... -
T Consensus 4 m~v~V~~fa~lr~~~g~~~~~l~---~~tv~~ll~~L~~~~p~l~~~l~~~g~l~~~v~~~~~~~~v~VNg~~v~~~~-~ 79 (99)
T 2l52_A 4 AEVKVKLFANLREAAGTPELPLS---GEKVIDVLLSLTDKYPALKYVIFEKGDEKSEILILCGSINILINGNNIRHLE-G 79 (99)
T ss_dssp CEEEEEECTHHHHHHSSSEEEEE---CSSHHHHHHHHHHHCGGGTTTSBCSCCTTSSCCCBCSSCEEEETTSCGGGTT-S
T ss_pred eEEEEEEeHHHHHHhCCCeEEEe---CCcHHHHHHHHHHHChhHHHHHhcccccccceeccccccEEEECCEEccccC-C
Confidence 688888654 2 244444 68999999999887420 0010 0 123 5677887663221 1
Q ss_pred cccccCCCCeEEEE
Q 023989 60 ADNKVSEDGFLVVM 73 (274)
Q Consensus 60 ~d~~I~~~~~I~v~ 73 (274)
.+.-+++||.|.++
T Consensus 80 ~~~~L~~gD~V~i~ 93 (99)
T 2l52_A 80 LETLLKDSDEIGIL 93 (99)
T ss_dssp TTSCCCTTEEEEEE
T ss_pred CCCCCCCCCEEEEE
Confidence 23458899998876
No 210
>2q5w_D Molybdopterin converting factor, subunit 1; MOCO, MPT synthase, MOAD, MOAE, transferase, molybdenum cofactor biosynthesis; 2.00A {Staphylococcus aureus} PDB: 2qie_B*
Probab=83.09 E-value=2.6 Score=29.53 Aligned_cols=54 Identities=7% Similarity=0.126 Sum_probs=40.1
Q ss_pred cEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCe--EEEeCCeecCCCCcccccccCCCCeEEEE
Q 023989 11 SHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQ--LLIHNGKVLKDETTLADNKVSEDGFLVVM 73 (274)
Q Consensus 11 ~~~~ieV~~~~TV~~LK~kI~~~~g~~~~p~~~q--kLI~~GK~L~D~~tL~d~~I~~~~~I~v~ 73 (274)
....+++....||.+|.+.+...... .... .+..+|+....+ .-+++||.|.++
T Consensus 16 ~~~~~~~~~~~tv~~ll~~l~~~~p~----~~~v~~~v~vNg~~v~~~-----~~L~~gD~V~i~ 71 (77)
T 2q5w_D 16 AQEDIVLEQALTVQQFEDLLFERYPQ----INNKKFQVAVNEEFVQKS-----DFIQPNDTVALI 71 (77)
T ss_dssp SEEECCCSSCEEHHHHHHHHHHHCGG----GTTCCCEEEETTEEECTT-----SEECTTCEEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHHHCcc----hhcceEEEEECCEECCCC-----CCcCCCCEEEEE
Confidence 35667777788999999998877420 1233 788899988754 568899998876
No 211
>1xb2_B EF-TS, elongation factor TS, mitochondrial, EF-TSMT; protein-protein complex, translation; HET: MSE; 2.20A {Bos taurus} SCOP: a.5.2.2 d.43.1.1 d.43.1.1
Probab=82.93 E-value=1.4 Score=39.86 Aligned_cols=36 Identities=14% Similarity=0.250 Sum_probs=33.0
Q ss_pred HHHHHHHHc-CCCCCCHHHHHHHHHHhcCCHHHHHHHHHc
Q 023989 155 QTIQQIMDM-GGGTWDKETVTRALQAAYNNPERAVDYLYS 193 (274)
Q Consensus 155 ~~i~~i~eM-G~~~f~r~qv~~ALrAafnNpdrAvEyL~~ 193 (274)
.+|.+|-++ | +.=-+|.+||..+.+|.|.|+|||--
T Consensus 6 ~~VKeLRe~TG---agmmdCKKAL~e~~GD~ekAie~LR~ 42 (291)
T 1xb2_B 6 ELLMKLRRKTG---YSFINCKKALETCGGDLKQAESWLHK 42 (291)
T ss_dssp HHHHHHHHHHC---CCHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHHHHhC---CCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 578999998 7 88889999999999999999999983
No 212
>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A
Probab=82.81 E-value=4.6 Score=30.07 Aligned_cols=46 Identities=13% Similarity=0.193 Sum_probs=35.6
Q ss_pred EEEEe-CCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCC-CeEEEeCCe
Q 023989 3 LTVKT-LKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCG-QQLLIHNGK 51 (274)
Q Consensus 3 I~VKt-l~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~~p~~-~qkLI~~GK 51 (274)
|+||. .+|..+.+.|+++.+..+|.++|.+.++ +..+ ...|-|...
T Consensus 7 vkvK~~~~gdi~~~~v~~~i~~~~L~~kv~~~~~---~~~~~~f~lky~DE 54 (89)
T 1vd2_A 7 VRVKAYYRGDIMITHFEPSISFEGLCNEVRDMCS---FDNEQLFTMKWIDE 54 (89)
T ss_dssp EEEEEESSSCEEEEEECTTCCHHHHHHHHHHHTT---CCSSCCEEEEECCS
T ss_pred EEEEEEeCCeEEEEECCCCCCHHHHHHHHHHHhC---CCCCCeEEEEEECC
Confidence 44543 4678889999999999999999999988 6543 467777653
No 213
>1y8x_B Ubiquitin-activating enzyme E1C; ubiquitin-conjugating enzyme E2 M, ligase; 2.40A {Homo sapiens} SCOP: c.111.1.2 PDB: 3fn1_A
Probab=82.55 E-value=1.5 Score=33.33 Aligned_cols=59 Identities=15% Similarity=0.165 Sum_probs=40.3
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCC-----------eEEEeCC-eecC------CCCcccccccCCCCeEEEE
Q 023989 12 HFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQ-----------QLLIHNG-KVLK------DETTLADNKVSEDGFLVVM 73 (274)
Q Consensus 12 ~~~ieV~~~~TV~~LK~kI~~~~g~~~~p~~~-----------qkLI~~G-K~L~------D~~tL~d~~I~~~~~I~v~ 73 (274)
...|+|+++.|+.+|-+.|.+.-. +.... ..|+..+ ..|+ =+++|.++|+.+|+.|+|.
T Consensus 6 ~~~l~v~~~~TL~~lid~L~~~p~---~qlk~PSltt~~~~~~k~LYmq~pp~Lee~Tr~NL~k~l~eLgl~~g~ei~Vt 82 (98)
T 1y8x_B 6 PQNIQFSPSAKLQEVLDYLTNSAS---LQMKSPAITATLEGKNRTLYMQSVTSIEERTRPNLSKTLKELGLVDGQELAVA 82 (98)
T ss_dssp CCCEECCTTCBHHHHHHHHHHCTT---CCCSSCEEEEEETTEEEEEECSSCHHHHHHHHHHHHSBSGGGTCCTTCEEEEE
T ss_pred cEEEEECCchhHHHHHHHHHhChH---hhccCCeeeeecCCCCCeEEEeCcHHHHHHhHhhhhCCHHHhCCCCCCEEEEE
Confidence 456899999999999999998533 22222 2233232 2332 2578999999999998884
No 214
>1tr8_A Conserved protein (MTH177); chaperones, nascent polypeptide-associated complex, ribosome domain, ubiquitin, chaperone; 2.27A {Methanothermobacter marburgensis}
Probab=82.49 E-value=1.6 Score=33.46 Aligned_cols=35 Identities=34% Similarity=0.437 Sum_probs=32.1
Q ss_pred HHHHHHHHH-cCCCCCCHHHHHHHHHHhcCCHHHHHHHH
Q 023989 154 EQTIQQIMD-MGGGTWDKETVTRALQAAYNNPERAVDYL 191 (274)
Q Consensus 154 e~~i~~i~e-MG~~~f~r~qv~~ALrAafnNpdrAvEyL 191 (274)
++.|.-+|+ +| -+|+++++||+.+.||.=.|+-||
T Consensus 66 ~edi~lv~~q~~---vs~~~A~~aL~~~~gDiv~Ai~~L 101 (102)
T 1tr8_A 66 EDDIELVMNQTG---ASREDATRALQETGGDLAEAIMRL 101 (102)
T ss_dssp HHHHHHHHHHHC---CCHHHHHHHHHHTTTCHHHHHHHC
T ss_pred HHHHHHHHHHhC---CCHHHHHHHHHHcCCCHHHHHHHh
Confidence 577888888 68 999999999999999999999887
No 215
>1wgr_A Growth factor receptor-bound protein 7; RA domain, GRB7, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=82.16 E-value=5 Score=30.51 Aligned_cols=74 Identities=15% Similarity=0.077 Sum_probs=51.0
Q ss_pred EEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEE------eCCeecCCCCccccc----ccCCCCeEEE
Q 023989 3 LTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLI------HNGKVLKDETTLADN----KVSEDGFLVV 72 (274)
Q Consensus 3 I~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~~p~~~qkLI------~~GK~L~D~~tL~d~----~I~~~~~I~v 72 (274)
|+|-..+|..-.|.|+.++|+.++=+.+..+.++. .....-|+ +--+.|+|...|-+. .+.....+++
T Consensus 12 vkvf~~Dgssksi~V~~~~Ta~dv~~~L~~K~~~~--~~~~WaLvE~~P~L~~ER~~EDHE~vvevl~~W~~~s~nr~~F 89 (100)
T 1wgr_A 12 VKVYSEDGACRSVEVAAGATARHVCEMLVQRAHAL--SDETWGLVECHPHLALERGLEDHESVVEVQAAWPVGGDSRFVF 89 (100)
T ss_dssp EEEEETTSCEEEEEECTTCCHHHHHHHHHCSSSCC--CCCCCCEEEEETTTTEEEEECSSSCHHHHHTTSCSSSCCEEEE
T ss_pred EEEEecCCCEEEEEECCCCcHHHHHHHHHHHcCCC--CCCCeEEEEecCCCCcEEeccCchhHHHHHhhCccCCCcEEEE
Confidence 55556789999999999999999999999998842 22233332 233788998776655 3455666666
Q ss_pred EeccCC
Q 023989 73 MLSKSK 78 (274)
Q Consensus 73 ~v~k~k 78 (274)
..+..|
T Consensus 90 ~kr~~K 95 (100)
T 1wgr_A 90 RKNFAS 95 (100)
T ss_dssp CSCCSS
T ss_pred ecchhc
Confidence 544333
No 216
>1v92_A NSFL1 cofactor P47; 3-helix bundle, recombination; NMR {Rattus norvegicus} SCOP: a.5.2.3
Probab=79.70 E-value=3.9 Score=25.93 Aligned_cols=38 Identities=13% Similarity=0.232 Sum_probs=32.4
Q ss_pred hHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCHHHHHHHHH
Q 023989 153 LEQTIQQIMDMGGGTWDKETVTRALQAAYNNPERAVDYLY 192 (274)
Q Consensus 153 ~e~~i~~i~eMG~~~f~r~qv~~ALrAafnNpdrAvEyL~ 192 (274)
.++.|.+.++.-| -+++.++.-|..+.+|.++||...+
T Consensus 5 ~~~~i~~F~~iTg--~~~~~A~~~L~~~~wdle~Ai~~ff 42 (46)
T 1v92_A 5 RQDALREFVAVTG--AEEDRARFFLESAGWDLQIALASFY 42 (46)
T ss_dssp HHHHHHHHHHHTC--CCHHHHHHHHHHTTSCSHHHHHHHH
T ss_pred HHHHHHHHHHHhC--cCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 5678999999732 6899999999999999999997554
No 217
>4eut_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: BX7; 2.60A {Homo sapiens}
Probab=79.21 E-value=8.4 Score=34.86 Aligned_cols=54 Identities=11% Similarity=0.131 Sum_probs=42.3
Q ss_pred cEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCC-eecCC-CCcccccccCCC
Q 023989 11 SHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNG-KVLKD-ETTLADNKVSED 67 (274)
Q Consensus 11 ~~~~ieV~~~~TV~~LK~kI~~~~g~~~~p~~~qkLI~~G-K~L~D-~~tL~d~~I~~~ 67 (274)
....+.+.+..|+.+||++|++.++ +.++.|.|+|.+ ++.-| .+....|.-...
T Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~t~---i~~~~q~~l~~~~~~~~~~~~~~~~~~~~~~ 377 (396)
T 4eut_A 322 TAHKIYIHSYNTATIFHELVYKQTK---IISSNQELIYEGRRLVLEPGRLAQHFPKTTE 377 (396)
T ss_dssp EEEEEEECTTCBHHHHHHHHHHHHC---CCSTTEEEESSSSEECCCSSCBTTSSCCCCS
T ss_pred eEEEEEcCchhHHHHHHHHHHHhcC---CChhhhHHHhcCCCCCCCCCCccccCCCCCC
Confidence 4567888999999999999999999 999999999998 55444 445555544333
No 218
>2ns5_A Partitioning-defective 3 homolog; cell polarity, N-terminal domain, PB1 domain, asymmetric membrane localization, signaling protein; NMR {Rattus norvegicus}
Probab=79.19 E-value=13 Score=27.44 Aligned_cols=72 Identities=18% Similarity=0.179 Sum_probs=45.6
Q ss_pred CEEEEEeCCCcEEEEEeC-CCCCHHHHHHHHHHHhCCC-CCCCCC-e---EEEe-CCeecCCCCcccccccCCCCeEEEE
Q 023989 1 MKLTVKTLKGSHFEIRVQ-PSDTVMAVKKNIEDVQGKD-NYPCGQ-Q---LLIH-NGKVLKDETTLADNKVSEDGFLVVM 73 (274)
Q Consensus 1 M~I~VKtl~g~~~~ieV~-~~~TV~~LK~kI~~~~g~~-~~p~~~-q---kLI~-~GK~L~D~~tL~d~~I~~~~~I~v~ 73 (274)
|+|+|+. .+..+.|-+. ...||..|-++--.++-+. ....+. . +|-+ .|-+|+.+..|.+. +.++++|+-+
T Consensus 3 MKvtV~f-g~~~vvVPC~dg~~tV~~L~~~A~~RY~K~~~k~~~~~v~V~~l~~~~ggiLD~DD~l~dV-ldD~e~i~A~ 80 (85)
T 2ns5_A 3 FKVTVCF-GRTRVDVPCGDGRMKVFSLIQQAVTRYRKAVAKDPNYWIQVHRLEHGDGGILDLDDILCDV-ADDKDRLVAV 80 (85)
T ss_dssp EEEEEEE-TTEEEEEEESSSCCCHHHHHHHHHHHHHHHTTCCTTSCEEEEEEECSSSCEECTTSCHHHH-SCTTEEEEEE
T ss_pred cEEEEEE-CCEEEEEECCCCcccHHHHHHHHHHHHHHhcCCCCCcEEEEEEEEeCCCcEeCcccchhhh-ccCcceEEEE
Confidence 8999994 5667777774 4569998876644433110 021222 2 2334 78899888888887 6688887655
Q ss_pred e
Q 023989 74 L 74 (274)
Q Consensus 74 v 74 (274)
.
T Consensus 81 ~ 81 (85)
T 2ns5_A 81 F 81 (85)
T ss_dssp E
T ss_pred e
Confidence 3
No 219
>2cu3_A Unknown function protein; thermus thermophilus HB8, structural genomics, riken structu genomics/proteomics initiative, RSGI, NPPSFA; 1.70A {Thermus thermophilus} SCOP: d.15.3.2 PDB: 2htm_E
Probab=79.03 E-value=3 Score=28.50 Aligned_cols=55 Identities=15% Similarity=0.221 Sum_probs=39.7
Q ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCcccccccCCCCeEEEE
Q 023989 8 LKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVM 73 (274)
Q Consensus 8 l~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~~p~~~qkLI~~GK~L~D~~tL~d~~I~~~~~I~v~ 73 (274)
++|+.+ ++ ...||.+|.+.+ + ++.....+..+|+++..+ ...+.-+++||.|.++
T Consensus 4 vNg~~~--~~-~~~tv~~ll~~l----~---~~~~~v~vavN~~~v~~~-~~~~~~L~dgD~v~i~ 58 (64)
T 2cu3_A 4 LNGEPR--PL-EGKTLKEVLEEM----G---VELKGVAVLLNEEAFLGL-EVPDRPLRDGDVVEVV 58 (64)
T ss_dssp ETTEEE--CC-TTCCHHHHHHHH----T---BCGGGEEEEETTEEEEGG-GCCCCCCCTTCEEEEE
T ss_pred ECCEEE--Ec-CCCcHHHHHHHc----C---CCCCcEEEEECCEECCcc-ccCCcCCCCCCEEEEE
Confidence 467665 45 668999998876 4 556677788899988543 2334568899999887
No 220
>3e7l_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; 2.25A {Aquifex aeolicus} PDB: 4fth_A
Probab=77.18 E-value=3.8 Score=27.79 Aligned_cols=42 Identities=19% Similarity=0.317 Sum_probs=32.5
Q ss_pred cccCCCCchHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCHHHHHHHHHcCCC
Q 023989 145 SNLVAGNDLEQTIQQIMDMGGGTWDKETVTRALQAAYNNPERAVDYLYSGIP 196 (274)
Q Consensus 145 s~l~~g~~~e~~i~~i~eMG~~~f~r~qv~~ALrAafnNpdrAvEyL~~GIP 196 (274)
|.++.+..+.+.+.+ |+|+-+.+||+.+.+|..+|.+.| ||.
T Consensus 4 ~~~~~~~~l~~~l~~--------~E~~~i~~aL~~~~gn~~~aA~~L--Gis 45 (63)
T 3e7l_A 4 SYLLKIKELKEAKKE--------FEKIFIEEKLREYDYDLKRTAEEI--GID 45 (63)
T ss_dssp CTTTTCSCHHHHHHH--------HHHHHHHHHHHHTTTCHHHHHHHH--TCC
T ss_pred HHhccCCCHHHHHHH--------HHHHHHHHHHHHhCCCHHHHHHHH--CcC
Confidence 344555566665543 788999999999999999999988 664
No 221
>4dbg_B Ring finger protein 31; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens}
Probab=76.10 E-value=2.4 Score=34.98 Aligned_cols=28 Identities=21% Similarity=0.187 Sum_probs=26.2
Q ss_pred CCCCCHHHHHHHHHHhcCCHHHHHHHHH
Q 023989 165 GGTWDKETVTRALQAAYNNPERAVDYLY 192 (274)
Q Consensus 165 ~~~f~r~qv~~ALrAafnNpdrAvEyL~ 192 (274)
+|.+.+.++.+||+.+-+|.++||.+++
T Consensus 72 ~g~~s~~EAr~Aw~~~~Gd~~~Av~~ci 99 (162)
T 4dbg_B 72 LGAFSCQEARRAWLDRHGNLDEAVEECV 99 (162)
T ss_dssp GCCCCHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred CCcccHHHHHHHHHHccCChHHHHHHHH
Confidence 6889999999999999999999998875
No 222
>1fm0_D Molybdopterin convertin factor, subunit 1; molybdenum cofactor biosynthesis, transferase; 1.45A {Escherichia coli} SCOP: d.15.3.1 PDB: 1fma_D 1jw9_D 1jwa_D* 1jwb_D* 3bii_D 1nvi_D
Probab=75.79 E-value=11 Score=26.35 Aligned_cols=56 Identities=14% Similarity=0.167 Sum_probs=37.5
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHhCC--CCCCCCCeEEEeCCeecCCCCcccccccCCCCeEEEE
Q 023989 12 HFEIRVQPSDTVMAVKKNIEDVQGK--DNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVM 73 (274)
Q Consensus 12 ~~~ieV~~~~TV~~LK~kI~~~~g~--~~~p~~~qkLI~~GK~L~D~~tL~d~~I~~~~~I~v~ 73 (274)
.+.++ ....||.+|.+.+...... ..+......+..+|+...+ +.-+++||.|.++
T Consensus 18 ~~~~~-~~~~tv~~ll~~L~~~~p~~~~~l~~~~~~v~vN~~~v~~-----~~~l~~gD~V~i~ 75 (81)
T 1fm0_D 18 ATEVA-ADFPTVEALRQHMAAQSDRWALALEDGKLLAAVNQTLVSF-----DHPLTDGDEVAFF 75 (81)
T ss_dssp EEEEC-SCCSBHHHHHHHHHTTCHHHHHHHCCTTCEEEETTEECCT-----TCBCCTTCEEEEE
T ss_pred eEEEc-CCCCCHHHHHHHHHHHChhHHHHhcCCCEEEEECCEECCC-----CCCCCCCCEEEEe
Confidence 55565 5678999999998754210 0011234568889998864 4468899999886
No 223
>4g3o_A E3 ubiquitin-protein ligase AMFR; all-helical structure, BAG6; 1.60A {Homo sapiens}
Probab=74.91 E-value=6.5 Score=26.99 Aligned_cols=41 Identities=24% Similarity=0.276 Sum_probs=37.4
Q ss_pred CCchHHHHHHHHHc--CCCCCCHHHHHHHHHHhcCCHHHHHHHHHcC
Q 023989 150 GNDLEQTIQQIMDM--GGGTWDKETVTRALQAAYNNPERAVDYLYSG 194 (274)
Q Consensus 150 g~~~e~~i~~i~eM--G~~~f~r~qv~~ALrAafnNpdrAvEyL~~G 194 (274)
.+.++.+|+++.+| - ++++++..-|+-. +|.|.-+|=+|.|
T Consensus 14 ~sql~~Mve~V~~mFPq---v~~~~I~~DL~rT-gSVe~TienILeG 56 (58)
T 4g3o_A 14 QGQLNAMAHQIQEMFPQ---VPYHLVLQDLQLT-RSVEITTDNILEG 56 (58)
T ss_dssp HHHHHHHHHHHHHHCTT---SCHHHHHHHHHHH-CCHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHcCC---CCHHHHHHHHHHh-CCHHHHHHHHHcc
Confidence 45688999999999 6 7999999999998 9999999999988
No 224
>2kvr_A Ubiquitin carboxyl-terminal hydrolase 7; USP7, ubiquitin-like domain, UBL, ubiquitin specific protease, HOST-virus interaction, nucleus, protease; NMR {Homo sapiens}
Probab=74.22 E-value=2.8 Score=33.27 Aligned_cols=32 Identities=16% Similarity=0.287 Sum_probs=28.9
Q ss_pred EEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEe
Q 023989 14 EIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIH 48 (274)
Q Consensus 14 ~ieV~~~~TV~~LK~kI~~~~g~~~~p~~~qkLI~ 48 (274)
.+.|..+.||.+||..|++..| +++++|||-+
T Consensus 59 ~~rv~k~~~~~~~~~~va~~lg---~~~~~~RlW~ 90 (130)
T 2kvr_A 59 VFKVLKNSSLAEFVQSLSQTMG---FPQDQIRLWP 90 (130)
T ss_dssp EEECCTTSBHHHHHHHHHHHHC---CCGGGCEEEE
T ss_pred eEEEeccCcHHHHHHHHHHHhC---CCcccEEEEE
Confidence 5678889999999999999999 9999999853
No 225
>2dal_A Protein KIAA0794; FAS associted factor 1, UBA-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=73.65 E-value=4.8 Score=27.66 Aligned_cols=39 Identities=31% Similarity=0.335 Sum_probs=33.4
Q ss_pred chHHHHHHHHHc-CCCCCCHHHHHHHHHHhcCCHHHHHHHHHc
Q 023989 152 DLEQTIQQIMDM-GGGTWDKETVTRALQAAYNNPERAVDYLYS 193 (274)
Q Consensus 152 ~~e~~i~~i~eM-G~~~f~r~qv~~ALrAafnNpdrAvEyL~~ 193 (274)
..++.|.+.|++ | =+++.++.-|.++.+|.++||...+.
T Consensus 14 ~~~e~i~qF~~iTg---~~~~~A~~~Le~~~WnLe~Av~~ff~ 53 (62)
T 2dal_A 14 ALKGLIQQFTTITG---ASESVGKHMLEACNNNLEMAVTMFLD 53 (62)
T ss_dssp HHHHHHHHHHHHTC---CCHHHHHHHHHTTTSCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhC---CCHHHHHHHHHHcCCCHHHHHHHHHc
Confidence 346789999997 6 67999999999999999999986654
No 226
>2g1e_A Hypothetical protein TA0895; MOAD, molybdopterin, transferase; NMR {Thermoplasma acidophilum} PDB: 2k22_A
Probab=72.45 E-value=13 Score=26.55 Aligned_cols=59 Identities=12% Similarity=0.208 Sum_probs=37.7
Q ss_pred EEEeCCCCCHHHHHHHHHHHhCC--C--CCC----CCCeEEEeCCeecCCCCcccccccCCCCeEEEE
Q 023989 14 EIRVQPSDTVMAVKKNIEDVQGK--D--NYP----CGQQLLIHNGKVLKDETTLADNKVSEDGFLVVM 73 (274)
Q Consensus 14 ~ieV~~~~TV~~LK~kI~~~~g~--~--~~p----~~~qkLI~~GK~L~D~~tL~d~~I~~~~~I~v~ 73 (274)
.++++...||.+|.+.+...... . -+. .....+..+|+...... -.+.-+++||.|.++
T Consensus 18 ~~~~~~~~tv~~ll~~l~~~~p~~~~~~l~~~~g~~~~v~v~vN~~~v~~~~-~~~~~l~~gD~V~i~ 84 (90)
T 2g1e_A 18 EETFNGISKISELLERLKVEYGSEFTKQMYDGNNLFKNVIILVNGNNITSMK-GLDTEIKDDDKIDLF 84 (90)
T ss_dssp EEEESSCCBHHHHHHHHHHHSCHHHHHHHCCSSCSTTTCEEEESSSBGGGTC-SSSCBCCTTCEEEEE
T ss_pred EEEcCCCCcHHHHHHHHHHHCcchhhhccccccCcCcceEEEECCEEccccC-CCCcCCCCCCEEEEe
Confidence 34566678999999999877310 0 000 13456778888775321 234458999998886
No 227
>3qa8_A MGC80376 protein; kinase ubiquitin-like domain, phosphorylation, kinase domain ubiquitin-like domain, kinase, substrate binding; 3.60A {Xenopus laevis} PDB: 3qad_A* 3rzf_A*
Probab=71.04 E-value=5.2 Score=40.11 Aligned_cols=64 Identities=17% Similarity=0.319 Sum_probs=46.1
Q ss_pred CcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCe-ecCCCCccccccc--------CCCCeEEEEecc
Q 023989 10 GSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGK-VLKDETTLADNKV--------SEDGFLVVMLSK 76 (274)
Q Consensus 10 g~~~~ieV~~~~TV~~LK~kI~~~~g~~~~p~~~qkLI~~GK-~L~D~~tL~d~~I--------~~~~~I~v~v~k 76 (274)
.+...+.+.++.|+.+||..|++.+| ++++.|.|++.+. .+........|-+ ..++.++++..+
T Consensus 321 ~~~~~~~i~~~~tl~~l~~~i~~~T~---i~~~~q~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (676)
T 3qa8_A 321 GRVHTYPVTENENLQNLKSWLQQDTG---IPEEEQELLQASGLALNSAQPLTQYVIDCTVIDGRQGEGDLIFLFDN 393 (676)
T ss_dssp SCCCEEECCTTCCHHHHHHHHHTTSC---CCSTTCEEESSSSCCCCTTSCGGGSCCCSCC-------CCCEEECSS
T ss_pred cccceeecCCCccHHHHHHHHHHHhC---CCHHHHHHHhccCCCCCCCcchhhheeccccccccCCCCceEEEEec
Confidence 44567888999999999999999999 9999999998654 4555556666532 334455555554
No 228
>1rws_A Hypothetical protein PF1061; residual dipolar couplings, structural genomics, unknown FUN; NMR {Pyrococcus furiosus} SCOP: d.15.3.2 PDB: 1sf0_A
Probab=70.68 E-value=1.8 Score=30.80 Aligned_cols=48 Identities=23% Similarity=0.442 Sum_probs=35.7
Q ss_pred EEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCcccccccCCCCeEEEE
Q 023989 14 EIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVM 73 (274)
Q Consensus 14 ~ieV~~~~TV~~LK~kI~~~~g~~~~p~~~qkLI~~GK~L~D~~tL~d~~I~~~~~I~v~ 73 (274)
.++++...||.+|.+.+ + ++.....+..+|+++..+ .-|++||.|-++
T Consensus 24 ~~~~~~~~Tv~dLl~~L----~---~~~~~v~VavNg~~v~~~-----~~L~dGD~V~i~ 71 (77)
T 1rws_A 24 EIEWREGMKVRDILRAV----G---FNTESAIAKVNGKVVLED-----DEVKDGDFVEVI 71 (77)
T ss_dssp CCCCCSSCCHHHHHHTT----T---CSSCSSCEEETTEEECSS-----SCCCSSCCCBCS
T ss_pred EEECCCCCcHHHHHHHh----C---CCCcCEEEEECCEECCCC-----CCcCCCCEEEEE
Confidence 45667778999998764 4 556667788999998765 457888887655
No 229
>1wgy_A RAP guanine nucleotide exchange factor 5; ubiquitin fold, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=69.48 E-value=23 Score=27.05 Aligned_cols=68 Identities=15% Similarity=0.205 Sum_probs=46.3
Q ss_pred EEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEE---eCCee--cCCCCcccccccCCCCeEEEEec
Q 023989 5 VKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLI---HNGKV--LKDETTLADNKVSEDGFLVVMLS 75 (274)
Q Consensus 5 VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~~p~~~qkLI---~~GK~--L~D~~tL~d~~I~~~~~I~v~v~ 75 (274)
|-..+..-+++.+..+.|+.+|+..+.++.+ +..+.+.|+ ++|.. |+++..--.-.+.-+..|++..+
T Consensus 14 Vy~~Dhsy~tvr~~v~~sa~eIl~~va~kl~---~~~e~l~Lv~v~ssGEk~~lqp~d~si~tsL~~NgRLfvc~k 86 (104)
T 1wgy_A 14 VYITEHSYVSVKAKVSSIAQEILKVVAEKIQ---YAEEDLALVAITFSGEKHELQPNDLVISKSLEASGRIYVYRK 86 (104)
T ss_dssp EECSSSCEEEECCCTTCBSHHHHHHHHHHHT---SCGGGEEEEEECSSCCCCBCCTTSBSSCCSSCSSCEEEEEEC
T ss_pred EEeccCceEEEEEeccchHHHHHHHHHHHhc---CCccceEEEEEccCCcEeecCCcceEEEeeccccceEEEeeh
Confidence 3334555677888899999999999999998 655677775 67733 45544332333455677877654
No 230
>2eel_A Cell death activator CIDE-A; CIDE-N domain, cell death- inducing DFFA-like effector A, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=64.27 E-value=21 Score=26.55 Aligned_cols=50 Identities=18% Similarity=0.221 Sum_probs=35.2
Q ss_pred CCHHHHHHHHHHHhCCCCCCCCCeEEEe--CCeecCCCCcccccccCCCCeEEEEecc
Q 023989 21 DTVMAVKKNIEDVQGKDNYPCGQQLLIH--NGKVLKDETTLADNKVSEDGFLVVMLSK 76 (274)
Q Consensus 21 ~TV~~LK~kI~~~~g~~~~p~~~qkLI~--~GK~L~D~~tL~d~~I~~~~~I~v~v~k 76 (274)
.+.++|+.|..++.+ ++....+|+. .|.+++|+.-+..+ +.+++.|++.+
T Consensus 28 ~sL~EL~~K~~~~l~---l~~~~~~lvLeeDGT~VddEeyF~tL---p~nT~lmvL~~ 79 (91)
T 2eel_A 28 SSLQELISKTLDALV---IATGLVTLVLEEDGTVVDTEEFFQTL---GDNTHFMILEK 79 (91)
T ss_dssp SSHHHHHHHHHHHTT---CSSSCEEEEETTTCCBCCCHHHHTTS---CSSEEEEEEET
T ss_pred CCHHHHHHHHHHHhc---CCCCCcEEEEeeCCcEEechhhhhhC---CCCCEEEEEcC
Confidence 479999999999988 7655677754 58888877554443 35566656554
No 231
>2c7h_A RBBP6, retinoblastoma-binding protein 6, isoform 3; P53-associated, mRNA processing, splicing-associated, oesophageal cancer; NMR {Homo sapiens}
Probab=62.13 E-value=20 Score=26.41 Aligned_cols=34 Identities=12% Similarity=-0.004 Sum_probs=26.0
Q ss_pred EEEEEeCCCcE-EEEEeC-CCCCHHHHHHHHHHHhC
Q 023989 2 KLTVKTLKGSH-FEIRVQ-PSDTVMAVKKNIEDVQG 35 (274)
Q Consensus 2 ~I~VKtl~g~~-~~ieV~-~~~TV~~LK~kI~~~~g 35 (274)
.|+.|....+. ..|.++ ...+|.+||..|..+.+
T Consensus 8 ~V~YKFkS~k~~~~v~fdG~~Isv~dLKr~I~~~~k 43 (86)
T 2c7h_A 8 CVHYKFSSKLNYDTVTFDGLHISLCDLKKQIMGREK 43 (86)
T ss_dssp EEEEEETTCSSEEEEEESSSEEEHHHHHHHHHHHHT
T ss_pred EEEEEEeecCCcceEEEcCCEEEHHHHHHHHHHHhC
Confidence 36667665554 457777 56899999999999988
No 232
>1g2h_A Transcriptional regulatory protein TYRR homolog; protein structure, , DNA-binding domain, helix- turn-helix motif; NMR {Haemophilus influenzae} SCOP: a.4.1.12
Probab=61.77 E-value=4.1 Score=27.58 Aligned_cols=26 Identities=8% Similarity=0.238 Sum_probs=23.4
Q ss_pred CCHHHHHHHHHHhcCCHHHHHHHHHcCCC
Q 023989 168 WDKETVTRALQAAYNNPERAVDYLYSGIP 196 (274)
Q Consensus 168 f~r~qv~~ALrAafnNpdrAvEyL~~GIP 196 (274)
|+|+-+.+||+.+ +|..+|.+.| ||.
T Consensus 21 ~Er~~I~~aL~~~-gn~~~aA~~L--GIs 46 (61)
T 1g2h_A 21 YEAQVLKLFYAEY-PSTRKLAQRL--GVS 46 (61)
T ss_dssp HHHHHHHHHHHHS-CSHHHHHHHT--TSC
T ss_pred HHHHHHHHHHHHh-CCHHHHHHHh--CCC
Confidence 7899999999999 9999999987 764
No 233
>2ekf_A Ancient ubiquitous protein 1; CUE, ubiquitin ligase complex, ubiquitin-conjugating enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=60.62 E-value=37 Score=23.38 Aligned_cols=41 Identities=15% Similarity=0.207 Sum_probs=37.0
Q ss_pred CCchHHHHHHHHHc--CCCCCCHHHHHHHHHHhcCCHHHHHHHHHcC
Q 023989 150 GNDLEQTIQQIMDM--GGGTWDKETVTRALQAAYNNPERAVDYLYSG 194 (274)
Q Consensus 150 g~~~e~~i~~i~eM--G~~~f~r~qv~~ALrAafnNpdrAvEyL~~G 194 (274)
-+.++.+|+++.+| - ++++.+..-|+-. +|.+.-+|=+|.|
T Consensus 10 ~~ql~~mv~~V~~mfP~---vp~~~I~~DL~~T-gsVe~TienILeG 52 (61)
T 2ekf_A 10 DVQLATLAQRVKEVLPH---VPLGVIQRDLAKT-GCVDLTITNLLEG 52 (61)
T ss_dssp CCCHHHHHHHHHHHCSS---SCHHHHHHHHHTS-CCHHHHHHHHHSC
T ss_pred cHHHHHHHHHHHHHcCC---CCHHHHHHHHHHh-CCHHHHHHHHHcC
Confidence 35789999999999 6 7999999999887 5999999999999
No 234
>3hvz_A Uncharacterized protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.20A {Clostridium leptum}
Probab=60.44 E-value=37 Score=24.18 Aligned_cols=63 Identities=21% Similarity=0.227 Sum_probs=43.5
Q ss_pred EEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCcccccccCCCCeEEEEecc
Q 023989 2 KLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVMLSK 76 (274)
Q Consensus 2 ~I~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~~p~~~qkLI~~GK~L~D~~tL~d~~I~~~~~I~v~v~k 76 (274)
.|.|.+.+|..+ ++....|+.|+=..|....+. ...--..+|+...-+ +-+++|+.|-++..+
T Consensus 7 ~i~v~tP~G~~~--~lp~GaT~~D~A~~Ih~~lg~-----~~v~AkVNG~~v~L~-----~~L~~gd~VeIit~~ 69 (78)
T 3hvz_A 7 EVFVFTPKGDVI--SLPIGSTVIDFAYAIHSAVGN-----RMIGAKVDGRIVPID-----YKVKTGEIIDVLTTK 69 (78)
T ss_dssp EEEEECTTSCEE--EEETTCBHHHHHHHHCHHHHH-----TEEEEEETTEEECTT-----CBCCTTCBEEEEECC
T ss_pred eEEEECCCCCEE--EecCCCCHHHHHHHhhhhhhc-----ceEEEEECCEEcCCC-----cccCCCCEEEEEccC
Confidence 478888888765 556889999998888776652 122234577776543 457888988887654
No 235
>2inc_C TOUB protein; DIIRON, 4-helix bundle, carboxylate bridge, metalloenzyme, oxidoreductase; HET: P6G; 1.85A {Pseudomonas stutzeri} SCOP: d.15.12.1 PDB: 2ind_C* 3n20_C* 1t0r_C 1t0s_C 1t0q_C* 3n1x_C 3n1y_C* 3n1z_C* 2rdb_C* 3rn9_C* 3rna_C 3rnb_C 3rnc_C 3rne_C 3rnf_C* 3rng_C
Probab=59.84 E-value=41 Score=24.60 Aligned_cols=62 Identities=11% Similarity=0.096 Sum_probs=48.1
Q ss_pred EEEEeCCCCCHHHHHHHHHHHh-CCCC--CCCCCeEEEeCC--eecCCCCcccccccCCCCeEEEEe
Q 023989 13 FEIRVQPSDTVMAVKKNIEDVQ-GKDN--YPCGQQLLIHNG--KVLKDETTLADNKVSEDGFLVVML 74 (274)
Q Consensus 13 ~~ieV~~~~TV~~LK~kI~~~~-g~~~--~p~~~qkLI~~G--K~L~D~~tL~d~~I~~~~~I~v~v 74 (274)
.-+-|+.++|+.++-++++... |... -+..-.+..++| +.|..+.|+.+-||++-+.|-+..
T Consensus 15 ~LV~VDt~dTmdqVA~kvA~HsVGrRV~p~p~~~~rVr~~G~~~~~pr~~tvae~gl~P~e~vev~~ 81 (83)
T 2inc_C 15 QLVPVDTEDTMDQVAEKCAYHSINRRVHPQPEKILRVRRHEDGTLFPRGMIVSDAGLRPTETLDIIF 81 (83)
T ss_dssp EEEEECTTCBHHHHHHHHHTTTBTTTBCCCTTSEEEEEETTTCCEECTTCBGGGSCCCTTCEEEEEE
T ss_pred EEEEecCCCcHHHHHHHHhhhhcceecCCCCCCeEEEEecCCccCCCCCCEeeccCCCCceEEEEEE
Confidence 3468999999999999998653 4221 112245777899 999999999999999999988765
No 236
>2ejs_A Autocrine motility factor receptor, isoform 2; CUE, ubiquitin ligase complex, ubiquitin-conjugating enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=59.54 E-value=22 Score=24.23 Aligned_cols=41 Identities=24% Similarity=0.274 Sum_probs=37.1
Q ss_pred CCchHHHHHHHHHc--CCCCCCHHHHHHHHHHhcCCHHHHHHHHHcC
Q 023989 150 GNDLEQTIQQIMDM--GGGTWDKETVTRALQAAYNNPERAVDYLYSG 194 (274)
Q Consensus 150 g~~~e~~i~~i~eM--G~~~f~r~qv~~ALrAafnNpdrAvEyL~~G 194 (274)
-+..+.+|+++.+| - ++++.+..-|+-.- |.+.-+|=+|.|
T Consensus 10 ~~q~~~mv~~V~~mfP~---vp~~~I~~DL~~Tg-sVe~TienILeG 52 (58)
T 2ejs_A 10 NSQLNAMAHQIQEMFPQ---VPYHLVLQDLQLTR-SVEITTDNILEG 52 (58)
T ss_dssp CCHHHHHHHHHHHHCCS---SCHHHHHHHHHHHC-SHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHcCC---CCHHHHHHHHHHhC-CHHHHHHHHHhc
Confidence 35789999999999 6 79999999998876 999999999988
No 237
>2ylm_A Ubiquitin carboxyl-terminal hydrolase 7; UBL; 2.70A {Homo sapiens}
Probab=58.34 E-value=32 Score=33.22 Aligned_cols=58 Identities=10% Similarity=0.088 Sum_probs=41.8
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHhCCCCCC---CCCeEE--EeCCee---cCCCCcccccccCCCCeEEE
Q 023989 12 HFEIRVQPSDTVMAVKKNIEDVQGKDNYP---CGQQLL--IHNGKV---LKDETTLADNKVSEDGFLVV 72 (274)
Q Consensus 12 ~~~ieV~~~~TV~~LK~kI~~~~g~~~~p---~~~qkL--I~~GK~---L~D~~tL~d~~I~~~~~I~v 72 (274)
.+.|-|..+.||.||-+.+.++.+ ++ ...+|| +|++|+ +.++.+|..++=.....|.+
T Consensus 353 ~~~l~vpK~gtV~Dll~~l~k~~~---~~~~~~~~lRl~ev~~~ki~ki~~~~~~i~~i~d~~~~~~ri 418 (530)
T 2ylm_A 353 EITLYPDKHGCVRDLLEECKKAVE---LGEKASGKLRLLEIVSYKIIGVHQEDELLECLSPATSRTFRI 418 (530)
T ss_dssp EEEECCBTTCBHHHHHHHHHTTCC---CCTTCCCCEEEEEEETTEEEEEECTTSBGGGSCCCTTCEEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHhcC---CCcCCcccEEEEEEECCEEEEecCCCcccccccccccceEEE
Confidence 566778899999999999999887 54 467777 588865 67788887653322444444
No 238
>3ge3_C Toluene-4-monooxygenase system protein B; DIIRON hydroxylase, effector protein, T201A, aromatic hydrocarbons catabolism, FAD, flavoprotein; 1.52A {Pseudomonas mendocina} SCOP: d.15.12.0 PDB: 3dhh_C* 3dhg_C* 3dhi_C 3ge8_C 3i5j_C 3i63_C 3q14_C 3q2a_C* 3q3m_C* 3q3n_C* 3q3o_C* 3rmk_C* 3ri7_C*
Probab=56.44 E-value=32 Score=25.24 Aligned_cols=62 Identities=11% Similarity=0.119 Sum_probs=48.7
Q ss_pred EEEEeCCCCCHHHHHHHHHHHh-CCCC-CCCCCeEEEeCCee--cCCCCcccccccCCCCeEEEEe
Q 023989 13 FEIRVQPSDTVMAVKKNIEDVQ-GKDN-YPCGQQLLIHNGKV--LKDETTLADNKVSEDGFLVVML 74 (274)
Q Consensus 13 ~~ieV~~~~TV~~LK~kI~~~~-g~~~-~p~~~qkLI~~GK~--L~D~~tL~d~~I~~~~~I~v~v 74 (274)
.-+-|+..+|+.++-++++... |... -.+.-.+.-++|.. |.++.++.+-||++-+.|-++.
T Consensus 17 ~Lv~VDt~dtmdqVA~k~A~h~VGrrv~p~pg~lrVr~~G~~~~~Pr~mtVaeaGl~Pme~vev~~ 82 (84)
T 3ge3_C 17 QLVVVDLNDSMDQVAEKVAYHCVNRRVAPREGVMRVRKHRSTELFPRDMTIAESGLNPTEVIDVVF 82 (84)
T ss_dssp EEEEEETTCBHHHHHHHHHHTTBTTTBCCCSSCEEEEETTCSCBCCTTCBHHHHCCCTTCEEEEEE
T ss_pred EEEEecCCCcHHHHHHHHhhhhcceeeCCCCCcEEEEECCCcccCCCCCEeeccCCCcceEEEEEE
Confidence 3467999999999999998654 4221 11236788899988 9999999999999999988764
No 239
>3w1s_C Ubiquitin-like protein ATG12; ubiquitin fold, E3-like, ATG3 binding, isopeptide bond betwe Gly186 and ATG5 Lys149, ligase; 2.60A {Saccharomyces cerevisiae S288C}
Probab=56.22 E-value=47 Score=24.51 Aligned_cols=58 Identities=9% Similarity=0.064 Sum_probs=42.6
Q ss_pred EEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeec-CCCCccccc--ccCCCCeEEEEecc
Q 023989 14 EIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVL-KDETTLADN--KVSEDGFLVVMLSK 76 (274)
Q Consensus 14 ~ieV~~~~TV~~LK~kI~~~~g~~~~p~~~qkLI~~GK~L-~D~~tL~d~--~I~~~~~I~v~v~k 76 (274)
.+-|+.+.||.+|...|.++.+ + +..=|..+...+ ..+.+++++ ..+++++|+|.-+.
T Consensus 26 KflV~~~~t~~~~v~~lRkrL~---l--~alFlyVNn~f~Ps~d~~~~~Ly~~fk~dg~Lyv~Ys~ 86 (91)
T 3w1s_C 26 VCKISMSQSFAMVILFLKRRLK---M--DHVYCYINNSFAPSPQQNIGELWMQFKTNDELIVSYCA 86 (91)
T ss_dssp EEEEETTSBHHHHHHHHHHHHT---C--SCCEEEETTTBCCCTTSBHHHHHHHHCBTTEEEEEEEC
T ss_pred EEEcCCCCCHHHHHHHHHHhhC---C--ceEEEEECCccCCCcccHHHHHHHHhCCCCEEEEEEeC
Confidence 4568899999999999999988 5 556565577654 556777665 34467888887653
No 240
>2kmc_A Fermitin family homolog 1; kindlin, cytoskeleton, integrin, N-terminal, talin, cell adhesion, cell junction, cell membrane, cell projection; NMR {Mus musculus}
Probab=56.06 E-value=64 Score=24.43 Aligned_cols=73 Identities=18% Similarity=0.137 Sum_probs=53.8
Q ss_pred EEEEEeCCC---cEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCC---eecCCCCcccccccCCCCeEEEEec
Q 023989 2 KLTVKTLKG---SHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNG---KVLKDETTLADNKVSEDGFLVVMLS 75 (274)
Q Consensus 2 ~I~VKtl~g---~~~~ieV~~~~TV~~LK~kI~~~~g~~~~p~~~qkLI~~G---K~L~D~~tL~d~~I~~~~~I~v~v~ 75 (274)
+|+|..++. ..++++|..+.-|+-|.-+|-++.... -.-...-|-.-- ..|+-..||..|||+-+..+++.-.
T Consensus 21 ~V~V~d~~~~~~~~~~lrV~GdlHIGGvmlklVEki~i~-~dWSDhaLWW~~k~~WLlkt~~tLDkygiqADa~L~ftp~ 99 (102)
T 2kmc_A 21 VVRVDHANGEQQTEITLRVSGDLHIGGVMLKLVEQMNIA-QDWSDYALWWEQKRCWLLKTHWTLDKCGVQADANLLFTPQ 99 (102)
T ss_dssp EEEEECTTSSCEEEEEEEECSCCBHHHHHHHHHHHHCCS-SCCSSEEEEETTTTEEECCTTSBHHHHTCCTTSCEEEEEC
T ss_pred EEEEecCCcccCccEEEEEeeccccchhhhhhhhhcccc-cchHHhhhhhhhhchhhhhhhhhhhhhceeeeeeeeccCC
Confidence 578887554 568899999999999999999877511 223344444433 3468889999999999999988754
No 241
>3au4_A Myosin-X; protein-protein complex, motor protein cargo transportation, protein-apoptosis complex; 1.90A {Homo sapiens} PDB: 3au5_A 3pzd_A
Probab=55.39 E-value=26 Score=33.70 Aligned_cols=58 Identities=21% Similarity=0.178 Sum_probs=43.5
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCC--CCCeEEEeC--C--eecCCCCcccc
Q 023989 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYP--CGQQLLIHN--G--KVLKDETTLAD 61 (274)
Q Consensus 1 M~I~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~~p--~~~qkLI~~--G--K~L~D~~tL~d 61 (274)
|.+.|..++|....++|+...|+.+|-+.|..+.| +. .+..-|.+. + +.|+++..+-|
T Consensus 217 ~~~~V~l~dg~~~~~~v~~~tt~~el~~~v~~~lg---L~e~~~~FgL~~~~~~~~~~L~~~~~i~D 280 (555)
T 3au4_A 217 MTSTVYCHGGGSCKITINSHTTAGEVVEKLIRGLA---MEDSRNMFALFEYNGHVDKAIESRTVVAD 280 (555)
T ss_dssp EEEEEEETTSCEEEEEECTTCBHHHHHHHHHHHTT---CTTCCSEEEEEEESSSCEEECCTTSBHHH
T ss_pred cceEEEecCCCeEEEEeCCCCcHHHHHHHHHHHcC---CCCCCCceEEEEEeCCeeEecCCCCchhH
Confidence 45788999999999999999999999999999999 54 345566542 2 23556554443
No 242
>2kna_A Baculoviral IAP repeat-containing protein 4; XIAP, UBA, apoptosis, ligase, metal-binding, phosphoprotein, inhibitor, thiol protease inhibitor; NMR {Homo sapiens}
Probab=54.25 E-value=15 Score=27.86 Aligned_cols=36 Identities=19% Similarity=0.396 Sum_probs=27.0
Q ss_pred HHHHHHHcCCCCCCHHHHHHHHHHh-------cCCHHHHHHHHHcC
Q 023989 156 TIQQIMDMGGGTWDKETVTRALQAA-------YNNPERAVDYLYSG 194 (274)
Q Consensus 156 ~i~~i~eMG~~~f~r~qv~~ALrAa-------fnNpdrAvEyL~~G 194 (274)
.|++.++|| |++..|.++++-- |...+.-|.=|+.+
T Consensus 30 vV~~alemG---f~~~~V~~~v~~ki~~sG~~y~Tve~Lv~~ll~~ 72 (104)
T 2kna_A 30 MVQEAIRMG---FSFKDIKKIMEEKIQISGSNYKSLEVLVADLVNA 72 (104)
T ss_dssp HHHHHHHTT---CCHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHH
T ss_pred HHHHHHHcC---ccHHHHHHHHHHHHHHhCCCcCCHHHHHHHHHHH
Confidence 799999999 9999999999763 44555555555544
No 243
>4gdk_A Ubiquitin-like protein ATG12; protein-protein conjugate, protein-protein complex, ubiquiti protein, E3 ligase, ubiquitin-like fold; 2.70A {Homo sapiens} PDB: 4gdl_A
Probab=52.83 E-value=34 Score=25.25 Aligned_cols=60 Identities=15% Similarity=0.174 Sum_probs=42.5
Q ss_pred EEEeCCCCCHHHHHHHHHHHhCCCCCCCCC-eEEEeCCeec-CCCCccccc--ccCCCCeEEEEecc
Q 023989 14 EIRVQPSDTVMAVKKNIEDVQGKDNYPCGQ-QLLIHNGKVL-KDETTLADN--KVSEDGFLVVMLSK 76 (274)
Q Consensus 14 ~ieV~~~~TV~~LK~kI~~~~g~~~~p~~~-qkLI~~GK~L-~D~~tL~d~--~I~~~~~I~v~v~k 76 (274)
.+-|+.+.||.++...|.++.. +.+++ .-|..+...+ ..+.+++++ ..+++.+|+|.-+.
T Consensus 23 KflVp~~~tv~~~~~~lRkrL~---l~~~~alFlyVnn~~~P~~d~~~~~Ly~~~k~DGfLyv~Ys~ 86 (91)
T 4gdk_A 23 KWAVERTRTIQGLIDFIKKFLK---LVASEQLFIYVNQSFAPSPDQEVGTLYECFGSDGKLVLHYCK 86 (91)
T ss_dssp EEEEETTCBHHHHHHHHHHHTT---CCSSSCCEEEETTTBCCCTTCBHHHHHHHHCBTTEEEEEEES
T ss_pred EEEcCCCCCHHHHHHHHHHHhC---CCCCCeEEEEECCccCCChhhHHHHHHHHhCCCCEEEEEEeC
Confidence 4667889999999999999988 65554 4444466555 446677665 33478888887654
No 244
>2hj1_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; 2.10A {Haemophilus influenzae} SCOP: d.15.3.4
Probab=52.45 E-value=19 Score=26.93 Aligned_cols=59 Identities=8% Similarity=-0.045 Sum_probs=41.1
Q ss_pred cEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCcccccccCCCCeEEEEe
Q 023989 11 SHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVML 74 (274)
Q Consensus 11 ~~~~ieV~~~~TV~~LK~kI~~~~g~~~~p~~~qkLI~~GK~L~D~~tL~d~~I~~~~~I~v~v 74 (274)
..+.+++....||.++-+...-......+.....++..+|++.. .+.-+++||.|-++-
T Consensus 26 ~~~~~~v~~g~TV~daI~~~gi~~~~peIdl~~~~V~Vng~~v~-----~d~~L~dGDRVEIyr 84 (97)
T 2hj1_A 26 YLKSFQVDEGITVQTAITQSGILSQFPEIDLSTNKIGIFSRPIK-----LTDVLKEGDRIEIYR 84 (97)
T ss_dssp EEEEEEEETTCBHHHHHHHHTHHHHCTTCCTTTSEEEEEECSCC-----TTCBCCTTCEEEECC
T ss_pred EEEEEEcCCCCcHHHHHHHcCCCccCCcccccccEEEEcCEECC-----CCccCCCCCEEEEEe
Confidence 35677888999999998876532221014445678888999887 344578899998763
No 245
>2dzl_A Protein FAM100B; UBA-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=52.14 E-value=31 Score=23.87 Aligned_cols=37 Identities=24% Similarity=0.241 Sum_probs=32.6
Q ss_pred HHHHHHHHc-CCCCCCHHHHHHHHHHhcCCHHHHHHHHHcC
Q 023989 155 QTIQQIMDM-GGGTWDKETVTRALQAAYNNPERAVDYLYSG 194 (274)
Q Consensus 155 ~~i~~i~eM-G~~~f~r~qv~~ALrAafnNpdrAvEyL~~G 194 (274)
+.|.+.+++ | =+++.++.-|.++.+|.++||...+..
T Consensus 19 ~~i~qF~~iTg---~~~~~A~~~Le~~~WdLe~Al~~ff~~ 56 (66)
T 2dzl_A 19 VMINQFVLAAG---CAADQAKQLLQAAHWQFETALSTFFQE 56 (66)
T ss_dssp HHHHHHHHHHC---CCHHHHHHHHHTTTTCHHHHHHHHHTC
T ss_pred HHHHHHHHHcC---CCHHHHHHHHHHcCCCHHHHHHHHHcC
Confidence 789999997 6 799999999999999999999877643
No 246
>1f2r_I Inhibitor of caspase-activated DNAse; alpha-beta roll, protein-protein complex, DNA binding protein; NMR {Mus musculus} SCOP: d.15.2.1
Probab=51.53 E-value=28 Score=26.37 Aligned_cols=50 Identities=10% Similarity=0.153 Sum_probs=34.2
Q ss_pred CCHHHHHHHHHHHhCCCCCCCC--CeEEE--eCCeecCCCCcccccccCCCCeEEEEecc
Q 023989 21 DTVMAVKKNIEDVQGKDNYPCG--QQLLI--HNGKVLKDETTLADNKVSEDGFLVVMLSK 76 (274)
Q Consensus 21 ~TV~~LK~kI~~~~g~~~~p~~--~qkLI--~~GK~L~D~~tL~d~~I~~~~~I~v~v~k 76 (274)
.+..+|+.|...+.+ ++.. ..+|+ ..|..++|+.-+..+ +.+++.+++.+
T Consensus 37 ~SL~EL~~K~~~~l~---l~~~~~~~~lvLeeDGT~VddEeYF~tL---p~nT~lmvL~~ 90 (100)
T 1f2r_I 37 SSLEELRSKACELLA---IDKSLTPITLVLAEDGTIVDDDDYFLCL---PSNTKFVALAC 90 (100)
T ss_dssp SSHHHHHHHHHHHHC---CCGGGCSCEEEESSSCCBCCSSSSSSSS---CSCCEEEEECS
T ss_pred CCHHHHHHHHHHHhc---cCCCCCceEEEEeeCCcEEechhHhhcC---CCCCEEEEEcC
Confidence 579999999999998 6542 35654 379999888765554 24455555543
No 247
>1eo6_A GATE-16, golgi-associated ATPase enhancer of 16 KD; ubiquitin fold, protein binding; 1.80A {Bos taurus} SCOP: d.15.1.3
Probab=49.97 E-value=56 Score=25.07 Aligned_cols=59 Identities=27% Similarity=0.248 Sum_probs=41.8
Q ss_pred EEeCCCCCHHHHHHHHHHHhCCCCCCCCC-eEEEeCCeecCCCCccccc--cc-CCCCeEEEEecc
Q 023989 15 IRVQPSDTVMAVKKNIEDVQGKDNYPCGQ-QLLIHNGKVLKDETTLADN--KV-SEDGFLVVMLSK 76 (274)
Q Consensus 15 ieV~~~~TV~~LK~kI~~~~g~~~~p~~~-qkLI~~GK~L~D~~tL~d~--~I-~~~~~I~v~v~k 76 (274)
+-|..+.||.+|...|....+ +.+++ +-|+.++....-+.+++++ .. .++.+|+|..+.
T Consensus 49 flVp~~~tv~~f~~~iRk~l~---l~~~~alfl~vn~~~p~~~~~m~~LY~~~kd~DGfLyi~Ys~ 111 (117)
T 1eo6_A 49 YLVPSDITVAQFMWIIRKRIQ---LPSEKAIFLFVDKTVPQSSLTMGQLYEKEKDEDGFLYVAYSG 111 (117)
T ss_dssp EEEETTSBHHHHHHHHHHHHT---CCTTSCCEEEBTTBCCCTTSBHHHHHHHHCCTTSCEEEEEEC
T ss_pred EEcCCCCCHHHHHHhhHHhhc---CCCCCcEEEEECCEecCccchHHHHHHHhCCCCCEEEEEEeC
Confidence 346678899999999999988 55554 4555566655667777776 23 347799988764
No 248
>2r2q_A Gamma-aminobutyric acid receptor-associated protein-like 1; autophagy, ubiquitin homolog, structural genomics consortium, SGC, microtubule; 1.65A {Homo sapiens} PDB: 2l8j_A 1kjt_A 1kot_A 3d32_A 3dow_A 1gnu_A 1klv_A 1km7_A
Probab=49.32 E-value=51 Score=24.98 Aligned_cols=58 Identities=21% Similarity=0.087 Sum_probs=40.5
Q ss_pred EEeCCCCCHHHHHHHHHHHhCCCCCCCCC-eEEEeCCeecCCCCccccc--cc-CCCCeEEEEec
Q 023989 15 IRVQPSDTVMAVKKNIEDVQGKDNYPCGQ-QLLIHNGKVLKDETTLADN--KV-SEDGFLVVMLS 75 (274)
Q Consensus 15 ieV~~~~TV~~LK~kI~~~~g~~~~p~~~-qkLI~~GK~L~D~~tL~d~--~I-~~~~~I~v~v~ 75 (274)
+-|..+.||.+|...|....+ +.+++ +-|+.++....-+.+|+++ .. .++.+|+|..+
T Consensus 48 flVp~~~tv~~~~~~iRk~l~---l~~~~alfl~vn~~~p~~~~~m~~LY~~~kd~DGfLyi~Ys 109 (110)
T 2r2q_A 48 YLVPSDLTVGQFYFLIRKRIH---LRPEDALFFFVNNTIPPTSATMGQLYEDNHEEDYFLYVAYS 109 (110)
T ss_dssp EEEETTCBHHHHHHHHHHHTT---CCTTSCCEEEBTTBCCCTTSBHHHHHHHHCCTTSCEEEEEE
T ss_pred EEeCCCCcHHHHHHHHHHHhc---CCCCCcEEEEECCEecCccChHHHHHHHcCCCCCEEEEEEe
Confidence 455678899999999999987 55554 4555566655667778776 23 34678888653
No 249
>3pvl_A Myosin VIIA isoform 1; protein complex, novel folding, protein cargo binding, cargo proteins, motor protein-protein transport complex; 2.80A {Mus musculus}
Probab=49.23 E-value=35 Score=33.91 Aligned_cols=46 Identities=13% Similarity=0.039 Sum_probs=39.1
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEe
Q 023989 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIH 48 (274)
Q Consensus 1 M~I~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~~p~~~qkLI~ 48 (274)
|.+.|..++|....++|+...|+.+|-+.|..+.|. ...+..-|.|
T Consensus 264 i~~~V~llDgt~~~~~vds~Tt~~ell~~V~~~LgL--~e~~~FgL~~ 309 (655)
T 3pvl_A 264 IMLPVTFMDGTTKTLLTDSATTARELCNALADKISL--KDRFGFSLYI 309 (655)
T ss_dssp EEEEEEETTSCEEEEEECTTCBHHHHHHHHHHHTTC--SSCTTEEEEE
T ss_pred eEEEEEecCCceEEEEEccCCcHHHHHHHHHHHcCC--cccccceeEE
Confidence 467899999999999999999999999999999994 3455667765
No 250
>1v8c_A MOAD related protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, protein binding; 1.60A {Thermus thermophilus} SCOP: d.15.3.1 d.129.5.1
Probab=49.15 E-value=48 Score=27.06 Aligned_cols=56 Identities=13% Similarity=0.115 Sum_probs=38.0
Q ss_pred EEEeCCCCCHHHHHHHHHHHhCCCCCC---------CCCeEEEeCCeecCCCCcccccccCCCCeEEEE
Q 023989 14 EIRVQPSDTVMAVKKNIEDVQGKDNYP---------CGQQLLIHNGKVLKDETTLADNKVSEDGFLVVM 73 (274)
Q Consensus 14 ~ieV~~~~TV~~LK~kI~~~~g~~~~p---------~~~qkLI~~GK~L~D~~tL~d~~I~~~~~I~v~ 73 (274)
.++++. .||.+|.+.+...+.. +. .....+..+|+......- .+.-|++||.|.++
T Consensus 17 ~~ev~~-~TV~dLl~~L~~~~p~--l~~~l~~~~~l~~~v~VaVNg~~v~~~~~-~dt~L~dGDeVai~ 81 (168)
T 1v8c_A 17 QLELPG-ATVGEVLENLVRAYPA--LKEELFEGEGLAERVSVFLEGRDVRYLQG-LSTPLSPGATLDLF 81 (168)
T ss_dssp EEECCC-SBHHHHHHHHHHHCGG--GHHHHEETTEECTTCEEEETTEEGGGTTG-GGCBCCTTCEEEEE
T ss_pred eEEECC-CcHHHHHHHHHhhChh--hhhhhhcccccCCcEEEEECCEECCCcCC-CccCCCCCCEEEEE
Confidence 456665 8999999999877320 10 234567788888765322 34569999999887
No 251
>1eto_A FIS, factor for inversion stimulation; transcriptional activation region, DNA-binding protein, transcription activator; 1.90A {Escherichia coli} SCOP: a.4.1.12 PDB: 1etq_A 1ety_A 1fia_A 3fis_A 3iv5_A* 3jr9_A* 3jra_A* 3jrb_A* 3jrc_A* 3jrd_A* 3jre_A* 3jrf_A* 3jrg_A* 3jrh_A* 3jri_A* 1f36_A 1etv_A 1etk_A 1etx_A 1fip_A ...
Probab=48.96 E-value=10 Score=28.35 Aligned_cols=27 Identities=22% Similarity=0.289 Sum_probs=24.5
Q ss_pred CCHHHHHHHHHHhcCCHHHHHHHHHcCCC
Q 023989 168 WDKETVTRALQAAYNNPERAVDYLYSGIP 196 (274)
Q Consensus 168 f~r~qv~~ALrAafnNpdrAvEyL~~GIP 196 (274)
|+|+-+.+||+.+.+|..+|.+.| ||.
T Consensus 58 ~Er~~I~~aL~~~~gn~~~AA~~L--GIs 84 (98)
T 1eto_A 58 VEQPLLDMVMQYTLGNQTRAALMM--GIN 84 (98)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHH--TSC
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHh--CCC
Confidence 789999999999999999999998 664
No 252
>1vdl_A Ubiquitin carboxyl-terminal hydrolase 25; UBA domain, mouse cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.5.2.1
Probab=48.72 E-value=72 Score=22.90 Aligned_cols=41 Identities=24% Similarity=0.357 Sum_probs=34.2
Q ss_pred hHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCHHHHHHHHHcC
Q 023989 153 LEQTIQQIMDMGGGTWDKETVTRALQAAYNNPERAVDYLYSG 194 (274)
Q Consensus 153 ~e~~i~~i~eMG~~~f~r~qv~~ALrAafnNpdrAvEyL~~G 194 (274)
-+..+++|-|.- |+-|-.-...||+|+.+|...||-+|..-
T Consensus 24 ~q~lLnQLrEIT-GiqD~~~L~~ALkas~Gdl~~AV~~LT~~ 64 (80)
T 1vdl_A 24 QQTFLNQLREIT-GINDAQILQQALKDSNGNLELAVAFLTAK 64 (80)
T ss_dssp HHHHHHHHHHHS-CCCCHHHHHHHHHHHTSCHHHHHHHHHTT
T ss_pred HHHHHHHHHHHh-CCCcHHHHHHHHHhccCCHHHHHHHHhcc
Confidence 355789999985 45677778889999999999999999754
No 253
>2qho_B E3 ubiquitin-protein ligase EDD1; protein-protein complex, protein binding/ligase complex; 1.85A {Homo sapiens}
Probab=48.38 E-value=50 Score=21.81 Aligned_cols=38 Identities=29% Similarity=0.283 Sum_probs=32.5
Q ss_pred HHHHHHHHH--cCCCCCCHHHHHHHHHHhcCCHHHHHHHHHcC
Q 023989 154 EQTIQQIMD--MGGGTWDKETVTRALQAAYNNPERAVDYLYSG 194 (274)
Q Consensus 154 e~~i~~i~e--MG~~~f~r~qv~~ALrAafnNpdrAvEyL~~G 194 (274)
|+.|.+... -| -.|+-++|-|+-..-|.+.||.-||+-
T Consensus 10 e~li~q~q~VLqg---ksR~vIirELqrTnLdVN~AvNNlLsR 49 (53)
T 2qho_B 10 EELISQAQVVLQG---KSRSVIIRELQRTNLDVNLAVNNLLSR 49 (53)
T ss_dssp HHHHHHHHHHSTT---CCHHHHHHHHHHTTTCHHHHHHHHHC-
T ss_pred HHHHHHHHHHhcC---CcHHHHHHHHHHhCccHHHHHHHHhcc
Confidence 667776655 48 999999999999999999999999864
No 254
>2dam_A ETEA protein; KIAA0887, UBA-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=48.18 E-value=41 Score=23.24 Aligned_cols=43 Identities=19% Similarity=0.188 Sum_probs=35.7
Q ss_pred CchHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCHHHHHHHHHcC
Q 023989 151 NDLEQTIQQIMDMGGGTWDKETVTRALQAAYNNPERAVDYLYSG 194 (274)
Q Consensus 151 ~~~e~~i~~i~eMG~~~f~r~qv~~ALrAafnNpdrAvEyL~~G 194 (274)
.+.++.|++.+++-| .=+.+.++.-|..+.+|.++||...+.+
T Consensus 16 ~~~~e~i~qF~~ITg-~~d~~~A~~~Le~~~WnLe~Av~~ff~~ 58 (67)
T 2dam_A 16 QEQTEKLLQFQDLTG-IESMDQCRHTLEQHNWNIEAAVQDRLNE 58 (67)
T ss_dssp HHHHHHHHHHHHHHC-CSCHHHHHHHHHHHTSCHHHHHHHHHHS
T ss_pred hhHHHHHHHHHHHhC-CCCHHHHHHHHHHcCCCHHHHHHHHHhC
Confidence 446789999999863 2378899999999999999999877765
No 255
>2dhz_A RAP guanine nucleotide exchange factor (GEF)- like 1; LINK guanine nucleotide exchange factor II, LINK-gefii, RA domain, structural genomics; NMR {Homo sapiens}
Probab=48.16 E-value=50 Score=25.76 Aligned_cols=64 Identities=16% Similarity=0.208 Sum_probs=41.8
Q ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCC------CeEEE---eCCe--ecCCCCcccccccCCCCeEEEEec
Q 023989 9 KGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCG------QQLLI---HNGK--VLKDETTLADNKVSEDGFLVVMLS 75 (274)
Q Consensus 9 ~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~~p~~------~qkLI---~~GK--~L~D~~tL~d~~I~~~~~I~v~v~ 75 (274)
+..-+.+.+..+.|+.+|+..+.++.+ +..+ .+.|+ ++|. +|+++..--.-.+.-+..|++..+
T Consensus 18 Dhsy~tvr~~v~~sa~eIl~~va~kl~---~~e~~~~~~~~l~Lv~V~ssGEk~vlqp~d~sv~tsL~~NgRLfvc~k 92 (120)
T 2dhz_A 18 DHSYVTIRSRLSASVQDILGSVTEKLQ---YSEEPAGREDSLILVAVSSSGEKVLLQPTEDCVFTALGINSHLFACTR 92 (120)
T ss_dssp TSCCCCEEECTTCCHHHHHHHHHHHST---TCSSTTSCCSCCEEEEEETTCCCEECCTTCSCHHHHSCSSEEEEEECT
T ss_pred cCceEEEEEeccccHHHHHHHHHHHhc---cccccccccCceEEEEEccCCcEeecCCcceEEEeeccccceEEEeeh
Confidence 444456788889999999999999998 4333 57664 6773 355544332223444667776644
No 256
>1oai_A Nuclear RNA export factor; nuclear transport, nuclear transport factor; 1.0A {Homo sapiens} SCOP: a.5.2.3
Probab=48.05 E-value=47 Score=22.45 Aligned_cols=44 Identities=23% Similarity=0.324 Sum_probs=36.1
Q ss_pred chHHHHHHHHHc-CCCCCCHHHHHHHHHHhcCCHHHHHHHHH----cC-CCCc
Q 023989 152 DLEQTIQQIMDM-GGGTWDKETVTRALQAAYNNPERAVDYLY----SG-IPET 198 (274)
Q Consensus 152 ~~e~~i~~i~eM-G~~~f~r~qv~~ALrAafnNpdrAvEyL~----~G-IP~~ 198 (274)
+.+++|..+... | -..+-+.++|.-+-.|.+||+.-.. .| ||++
T Consensus 6 ~q~~mv~~~s~~Tg---mn~~~s~~cL~~~~Wd~~~A~~~F~~l~~~~~IP~e 55 (59)
T 1oai_A 6 EQQEMLQAFSTQSG---MNLEWSQKCLQDNNWDYTRSAQAFTHLKAKGEIPEV 55 (59)
T ss_dssp HHHHHHHHHHHHHC---CCHHHHHHHHHHTTTCHHHHHHHHHHHHHTTCSCGG
T ss_pred HHHHHHHHHHHHHC---CCHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCHH
Confidence 457888888887 7 8899999999999999999996532 24 8875
No 257
>3h9d_A ATG8, microtubule-associated protein 1A/1B, light chain putative; autophagy, lipidation, ubiquitin-like, S protein; 2.30A {Trypanosoma brucei} SCOP: d.15.1.0
Probab=47.67 E-value=74 Score=24.60 Aligned_cols=59 Identities=25% Similarity=0.256 Sum_probs=43.3
Q ss_pred EEeCCCCCHHHHHHHHHHHhCCCCCCCCC-eEEEeCCeecCCCCccccc--cc-CCCCeEEEEecc
Q 023989 15 IRVQPSDTVMAVKKNIEDVQGKDNYPCGQ-QLLIHNGKVLKDETTLADN--KV-SEDGFLVVMLSK 76 (274)
Q Consensus 15 ieV~~~~TV~~LK~kI~~~~g~~~~p~~~-qkLI~~GK~L~D~~tL~d~--~I-~~~~~I~v~v~k 76 (274)
+-|..+.||.+|...|....+ +.+++ +=|..++....-+.+++++ .- .++.+|+|..+.
T Consensus 52 flVp~~~tv~qf~~~iRkrl~---l~~~~alFl~Vn~~~p~~~~~m~~lY~~~kd~DGfLyv~Ys~ 114 (119)
T 3h9d_A 52 FLVPSDLTVGQFVSVLRKRVQ---LEAESALFVYTNDTVLPSSAQMADIYSKYKDEDGFLYMKYSG 114 (119)
T ss_dssp EEEETTCBHHHHHHHHHHHHT---CCTTSCCEEEETTEECCTTSBHHHHHHHHCCTTSCEEEEEEC
T ss_pred EEcCCCCCHHHHHHHHHHHhC---CCccceEEEEECCcCCCccchHHHHHHHcCCCCCeEEEEEec
Confidence 357789999999999999988 65555 4555577766777887776 23 346688887654
No 258
>4gmv_A RAS-associated and pleckstrin homology domains-CO protein 1; RA-PH, coiled-coil region, RAS-association domain, pleckstri homology domain; 2.40A {Homo sapiens} PDB: 4gn1_A
Probab=46.59 E-value=60 Score=28.84 Aligned_cols=68 Identities=19% Similarity=0.232 Sum_probs=46.4
Q ss_pred EEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeC-------CeecCCCCccccc----ccCCCCeEE
Q 023989 3 LTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHN-------GKVLKDETTLADN----KVSEDGFLV 71 (274)
Q Consensus 3 I~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~~p~~~qkLI~~-------GK~L~D~~tL~d~----~I~~~~~I~ 71 (274)
|.|-..+|....|+|++++|+.||=+.+..+.++ ....-..+|. -+.|+|...|-+. .......++
T Consensus 34 vkv~~~D~ss~~l~V~~~~TA~dv~~~L~~k~~~---~~~~~W~L~E~~~~l~lER~ledhE~V~dvl~~W~~ds~n~l~ 110 (281)
T 4gmv_A 34 IRVHMSDDSSKTMMVDERQTVRQVLDNLMDKSHC---GYSLDWSLVETVSELQMERIFEDHENLVENLLNWTRDSQNKLI 110 (281)
T ss_dssp EEEEETTSCEEEEEEETTCBHHHHHHHHHHHSCC---CCCTTCEEEEEEGGGTEEEECCTTSBHHHHHTTSCTTCCCEEE
T ss_pred EEEEecCCCEEEEEECCCCcHHHHHHHHHHhcCC---CCCCCeEEEEEcCCccceeccccchhHHHHHHhcccCCCceEE
Confidence 4454567888999999999999999999888873 2333333332 2778888777664 344455555
Q ss_pred EE
Q 023989 72 VM 73 (274)
Q Consensus 72 v~ 73 (274)
+.
T Consensus 111 f~ 112 (281)
T 4gmv_A 111 FM 112 (281)
T ss_dssp EE
T ss_pred EE
Confidence 54
No 259
>3hk0_A Growth factor receptor-bound protein 10; GRB10, RA, PH, RAS-associating, pleckstrin-homology, adapter phosphoprotein, SH2 domain; 2.60A {Homo sapiens}
Probab=46.23 E-value=33 Score=30.04 Aligned_cols=57 Identities=9% Similarity=0.033 Sum_probs=38.1
Q ss_pred EEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeC-------CeecCCCCccccc
Q 023989 3 LTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHN-------GKVLKDETTLADN 62 (274)
Q Consensus 3 I~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~~p~~~qkLI~~-------GK~L~D~~tL~d~ 62 (274)
|+|-.-+|....|.|+++.|+.+|=..+..+.+ +..+.-..+|. -|.|+|...|-+.
T Consensus 11 vkv~~~d~ss~~l~V~~~mta~ev~~~l~~k~~---~~~~~~W~l~E~~~~l~lER~ledhE~V~ev 74 (256)
T 3hk0_A 11 VKVFSEDGTSKVVEILADMTARDLCQLLVYKSH---SVDDNSWTLVEHHPHLGLERCLEDHELVVQV 74 (256)
T ss_dssp EEEEETTSCEEEEEECTTCBHHHHHHHHHCCC----------EEEEEEETTTTEEEECCTTSBHHHH
T ss_pred EEEEecCCcEEEEEECCCCCHHHHHHHHHHhcC---CCCCCCEEEEEECCCcccccccccchhHHHH
Confidence 455566888899999999999999999888766 33333343432 3788887766544
No 260
>3cz6_A DNA-binding protein RAP1; helical bundle, activator, chromosomal protein, nucleus, phosphoprotein, repressor, telomere; HET: MES; 1.85A {Saccharomyces cerevisiae} PDB: 3owt_A
Probab=45.80 E-value=19 Score=29.75 Aligned_cols=46 Identities=15% Similarity=0.263 Sum_probs=37.7
Q ss_pred CCchHHHHHHH-HHcCCCCCCH---HHHHHHHHHhcCC-HHHHHHHHHcC--CCCc
Q 023989 150 GNDLEQTIQQI-MDMGGGTWDK---ETVTRALQAAYNN-PERAVDYLYSG--IPET 198 (274)
Q Consensus 150 g~~~e~~i~~i-~eMG~~~f~r---~qv~~ALrAafnN-pdrAvEyL~~G--IP~~ 198 (274)
.+..|..|+.| .|-| |.+ ++|+.||+..-.+ |..=++||..| ||++
T Consensus 60 ~s~~~~Lv~~l~~e~G---i~~~fs~~Ii~ALs~tsM~~p~~VL~~l~~GkgiP~N 112 (168)
T 3cz6_A 60 PSQAEKLVQDLCDETG---IRKNFSTSILTCLSGDLMVFPRYFLNMFKDNVNPPPN 112 (168)
T ss_dssp TTCHHHHHHHHHHHHC---BCHHHHHHHHHHTTTCGGGHHHHHHHHHHHTCSSCTT
T ss_pred hhhHHHHHHHHHHHhC---cccccHHHHHHHhcCCcccCHHHHHHHHHhCCCCCCC
Confidence 45678899999 7789 976 5777899998889 88888999998 7754
No 261
>2zjd_A Microtubule-associated proteins 1A/1B light chain 3B precursor; autophagy, LC3, microtubule-associated protein 1 light chain 3, cytoplasm, cytoplasmic vesicle, lipoprotein; 1.56A {Homo sapiens} SCOP: d.15.1.3 PDB: 2z0e_B 2zzp_B 2z0d_B 1ugm_A 1v49_A 2k6q_A 3eci_A
Probab=45.62 E-value=52 Score=25.92 Aligned_cols=58 Identities=21% Similarity=0.293 Sum_probs=41.5
Q ss_pred EEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEE-eCCeec-CCCCccccc--cc-CCCCeEEEEec
Q 023989 15 IRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLI-HNGKVL-KDETTLADN--KV-SEDGFLVVMLS 75 (274)
Q Consensus 15 ieV~~~~TV~~LK~kI~~~~g~~~~p~~~qkLI-~~GK~L-~D~~tL~d~--~I-~~~~~I~v~v~ 75 (274)
+-|..+.||.+|...|.+..+ +.+++--.+ |-++.+ .-+.+++++ .. .++.+|+|..+
T Consensus 57 flVp~~~tv~qf~~~iRkrL~---l~~~~alFl~~vn~~~p~~~~~m~~lY~~~kdeDGfLyv~Ys 119 (130)
T 2zjd_A 57 FLVPDHVNMSELIKIIRRRLQ---LNANQAFFLLVNGHSMVSVSTPISEVYESEKDEDGFLYMVYA 119 (130)
T ss_dssp EEEETTCBHHHHHHHHHHHHT---CCTTCCEEEEETTTEECCTTSBHHHHHHHHCCTTSCEEEEEE
T ss_pred EEcCCCCcHHHHHHHHHHHhC---CCCCceEEEEEECCccCCccchHHHHHHHhCCCCCEEEEEEe
Confidence 457789999999999999998 666654444 755555 557777776 23 34678888765
No 262
>3r8s_T 50S ribosomal protein L23; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 3fik_T 3j19_T 2wwq_T 3oat_T* 3oas_T* 3ofd_T 3ofc_T 3ofr_T* 3ofz_T* 3og0_T 3ofq_T 3r8t_T 2j28_T 3e1b_M 3e1d_M 3iy9_T 3i1n_T 1p85_R 1p86_R 1vs8_T ...
Probab=45.26 E-value=49 Score=24.52 Aligned_cols=41 Identities=17% Similarity=0.249 Sum_probs=34.7
Q ss_pred cEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCe-EEEeCCeecC
Q 023989 11 SHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQ-LLIHNGKVLK 54 (274)
Q Consensus 11 ~~~~ieV~~~~TV~~LK~kI~~~~g~~~~p~~~q-kLI~~GK~L~ 54 (274)
..+.|.|+...|=.++|+.|+..++ +.+... .|++.||.=.
T Consensus 28 n~~~F~V~~~AnK~eIK~AVE~lf~---VkV~~VnT~~~~gK~kR 69 (93)
T 3r8s_T 28 NTIVLKVAKDATKAEIKAAVQKLFE---VEVEVVNTLVVKGKVKR 69 (93)
T ss_dssp SEEEEEECSSCCHHHHHHHHHHHSC---CCCCEEEEEEECCCBCC
T ss_pred CEEEEEECCCCCHHHHHHHHHHHcC---CceEEEEEEEeCCceee
Confidence 5899999999999999999999999 777776 4578887543
No 263
>3rui_B Autophagy-related protein 8; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} SCOP: d.15.1.3 PDB: 2kq7_A 2zpn_A 3vxw_A 2kwc_A 2li5_A 3vh3_B 3vh4_B*
Probab=44.89 E-value=82 Score=24.28 Aligned_cols=59 Identities=20% Similarity=0.164 Sum_probs=41.2
Q ss_pred EEeCCCCCHHHHHHHHHHHhCCCCCCCCCe-EEEeCCeecCCCCccccc--cc-CCCCeEEEEecc
Q 023989 15 IRVQPSDTVMAVKKNIEDVQGKDNYPCGQQ-LLIHNGKVLKDETTLADN--KV-SEDGFLVVMLSK 76 (274)
Q Consensus 15 ieV~~~~TV~~LK~kI~~~~g~~~~p~~~q-kLI~~GK~L~D~~tL~d~--~I-~~~~~I~v~v~k 76 (274)
+-|..+.||.+|...|..... +.+++- =|..++....-+.+++++ .- .++.+|+|..+.
T Consensus 51 flVp~~~tv~qf~~~iRkrl~---l~~~~alFl~Vn~~~p~~~~~m~~lY~~~kdeDGfLyv~Ys~ 113 (118)
T 3rui_B 51 YLVPADLTVGQFVYVIRKRIM---LPPEKAIFIFVNDTLPPTAALMSAIYQEHKDKDGFLYVTYSG 113 (118)
T ss_dssp EEEETTSBHHHHHHHHHHHTT---CCTTCCEEEEBTTBCCCTTSBHHHHHHHHCCTTSCEEEEEEE
T ss_pred EEcCCCCCHHHHHHHHHHHhC---cCCCccEEEEECCccCCccchHHHHHHHcCCCCCeEEEEEec
Confidence 447889999999999999988 655543 344466555667777766 23 356688887654
No 264
>1ntc_A Protein (nitrogen regulation protein (NTRC)); helix-turn-helix, FIS, four-helix bundle, transcription regulation; NMR {Salmonella typhimurium} SCOP: a.4.1.12
Probab=44.35 E-value=8.3 Score=28.08 Aligned_cols=27 Identities=22% Similarity=0.321 Sum_probs=24.3
Q ss_pred CCHHHHHHHHHHhcCCHHHHHHHHHcCCC
Q 023989 168 WDKETVTRALQAAYNNPERAVDYLYSGIP 196 (274)
Q Consensus 168 f~r~qv~~ALrAafnNpdrAvEyL~~GIP 196 (274)
|+|+-+.+||+.+.+|..+|.+.| ||.
T Consensus 51 ~E~~~i~~aL~~~~gn~~~aA~~L--GIs 77 (91)
T 1ntc_A 51 LERTLLTTALRHTQGHKQEAARLL--GWG 77 (91)
T ss_dssp HHHHHHHHHHHHTTTCTTHHHHHT--TCC
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHH--CcC
Confidence 789999999999999999999987 663
No 265
>3m95_A Autophagy related protein ATG8; alpha slash beta, receptor, transport protein; 2.40A {Bombyx mori} SCOP: d.15.1.3
Probab=43.90 E-value=65 Score=25.19 Aligned_cols=59 Identities=19% Similarity=0.090 Sum_probs=42.1
Q ss_pred EEeCCCCCHHHHHHHHHHHhCCCCCCCCCe-EEEeCCeecCCCCccccc--ccC-CCCeEEEEecc
Q 023989 15 IRVQPSDTVMAVKKNIEDVQGKDNYPCGQQ-LLIHNGKVLKDETTLADN--KVS-EDGFLVVMLSK 76 (274)
Q Consensus 15 ieV~~~~TV~~LK~kI~~~~g~~~~p~~~q-kLI~~GK~L~D~~tL~d~--~I~-~~~~I~v~v~k 76 (274)
+-|..+.||.+|...|..... +.+++- =|..++....-+.+++++ .-+ ++.+|+|..+.
T Consensus 57 flVp~~~tv~qf~~~IRkrl~---L~~~~alFl~Vnn~lPs~s~~m~~lY~~~kdeDGfLY~~Ys~ 119 (125)
T 3m95_A 57 YLVPSDLTVGQFYFLIRKRIH---LRPEDALFFFVNNVIPPTSATMGSLYQEHHDEDFFLYIAFSD 119 (125)
T ss_dssp EEEETTSBHHHHHHHHHHHTT---CCTTSCCEEEBTTBCCCTTSBHHHHHHHHCCTTSCEEEEEES
T ss_pred EEcCCCCEeeeehhhhHhhcC---CCccccEEEEECCccCCccchHHHHHHHcCCCCCeEEEEecC
Confidence 457789999999999999988 656654 444466555667777776 233 56788887654
No 266
>1wz3_A Autophagy 12B, ATG12B, APG12B; ubiquitin-fold, plant protein; 1.80A {Arabidopsis thaliana} SCOP: d.15.1.7
Probab=42.94 E-value=53 Score=24.44 Aligned_cols=58 Identities=19% Similarity=0.164 Sum_probs=40.4
Q ss_pred EEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeec-CCCCccccc--ccCCCCeEEEEecc
Q 023989 14 EIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVL-KDETTLADN--KVSEDGFLVVMLSK 76 (274)
Q Consensus 14 ~ieV~~~~TV~~LK~kI~~~~g~~~~p~~~qkLI~~GK~L-~D~~tL~d~--~I~~~~~I~v~v~k 76 (274)
.+-|..+.||.+|...|.++.. +. .+=|..+...+ ..+.+++++ ..+++.+|+|..+.
T Consensus 31 KflV~~~~t~~~~~~~lRkrL~---l~--alFlyvn~~~~Ps~d~~m~~LY~~~kdDGfLyi~Ys~ 91 (96)
T 1wz3_A 31 KFKVSGSDKFANVIDFLRRQLH---SD--SLFVYVNSAFSPNPDESVIDLYNNFGFDGKLVVNYAC 91 (96)
T ss_dssp EEEEETTSBTHHHHHHHHHHHT---CS--SCEEEEEEEECCCTTSBHHHHHHHHCBTTBEEEEEES
T ss_pred EEEeCCCCcHHHHHHHHHHhcC---Cc--eEEEEECCcccCChhhHHHHHHHHhCCCCEEEEEEeC
Confidence 4567789999999999999988 54 44443343244 557777766 34557788887654
No 267
>1umq_A Photosynthetic apparatus regulatory protein; DNA-binding protein, response regulator, DNA binding domain, helix-turn-helix; NMR {Rhodobacter sphaeroides} SCOP: a.4.1.12
Probab=42.43 E-value=14 Score=26.73 Aligned_cols=27 Identities=15% Similarity=0.124 Sum_probs=24.0
Q ss_pred CCHHHHHHHHHHhcCCHHHHHHHHHcCCC
Q 023989 168 WDKETVTRALQAAYNNPERAVDYLYSGIP 196 (274)
Q Consensus 168 f~r~qv~~ALrAafnNpdrAvEyL~~GIP 196 (274)
|+|+-+++||+.+-+|..+|.+.| ||.
T Consensus 41 ~Er~~I~~aL~~~~GN~s~AA~~L--GIS 67 (81)
T 1umq_A 41 VRWEHIQRIYEMCDRNVSETARRL--NMH 67 (81)
T ss_dssp HHHHHHHHHHHHTTSCHHHHHHHH--TSC
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHh--CCC
Confidence 788899999999999999999988 664
No 268
>1q1o_A Cell division control protein 24; PB1 domain, PCCR, PC motif, OPCA motif, yeast, cell polarity, protein-protein interaction; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 2kfj_A 2kfk_B
Probab=42.17 E-value=30 Score=26.06 Aligned_cols=26 Identities=12% Similarity=0.024 Sum_probs=23.5
Q ss_pred CcEEEEEeCCCCCHHHHHHHHHHHhC
Q 023989 10 GSHFEIRVQPSDTVMAVKKNIEDVQG 35 (274)
Q Consensus 10 g~~~~ieV~~~~TV~~LK~kI~~~~g 35 (274)
+..+.|-|.++.+..+|..+|..+.+
T Consensus 22 ~d~~~i~V~~~i~f~~L~~kI~~Kl~ 47 (98)
T 1q1o_A 22 SEIFTLLVEKVWNFDDLIMAINSKIS 47 (98)
T ss_dssp CEEEEEEECTTCCHHHHHHHHHHHHH
T ss_pred CcEEEEEecCCCCHHHHHHHHHHHHc
Confidence 44689999999999999999999987
No 269
>2jx5_A GLUB(S27A); ubiquitin, ribosome, recombination, evolution, ribosomal protein; NMR {Giardia lamblia atcc 50803}
Probab=41.84 E-value=79 Score=21.41 Aligned_cols=52 Identities=17% Similarity=0.287 Sum_probs=39.8
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCeecCCCCccc
Q 023989 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLA 60 (274)
Q Consensus 1 M~I~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~~p~~~qkLI~~GK~L~D~~tL~ 60 (274)
|-|.|| ++.+.+.+++....-..+|...+... | -...|--.|++|....-|.
T Consensus 1 mlvivr-lqdq~lpfelpaga~asqls~lls~~-g------m~fslhtqgrvlseaaeln 52 (69)
T 2jx5_A 1 MLVIVR-LQDQTLPFELPAGARASQLSNLLSSS-G------MAFSLHTQGRVLSEAAELN 52 (69)
T ss_dssp CEEEEE-ETTEEEEEECCTTCCHHHHHHHHHHS-S------CCCEEEETTEECCTTCCCC
T ss_pred CeEEEE-eccccccccccccccHHHHHHHHhhc-C------ceEEEeecchhhhhHHhhC
Confidence 667788 67789999999999999999887764 4 2456778899997655443
No 270
>3e21_A HFAF1, FAS-associated factor 1; UBA, alternative splicing, apoptosis, nucleus, phosphoprotein; 1.73A {Homo sapiens}
Probab=41.79 E-value=39 Score=21.72 Aligned_cols=35 Identities=14% Similarity=0.175 Sum_probs=29.7
Q ss_pred chHHHHHHHHHc-CCCCCC-HHHHHHHHHHhcCCHHHHHH
Q 023989 152 DLEQTIQQIMDM-GGGTWD-KETVTRALQAAYNNPERAVD 189 (274)
Q Consensus 152 ~~e~~i~~i~eM-G~~~f~-r~qv~~ALrAafnNpdrAvE 189 (274)
+.++.|.+.+++ | -+ -++++.=|.++..|.+.||.
T Consensus 4 d~de~ia~F~~iTG---~~d~~~A~~~Lea~nWDLe~Av~ 40 (45)
T 3e21_A 4 DREMILADFQACTG---IENIDEAITLLEQNNWDLVAAIN 40 (45)
T ss_dssp CHHHHHHHHHHHHC---CCCHHHHHHHHHHTTTCHHHHHT
T ss_pred cHHHHHHHHHHHHC---CCCHHHHHHHHHHcCCcHHHHHH
Confidence 468899999998 6 65 59999999999999999973
No 271
>3u52_E Phenol hydroxylase component PHO; 4-helix bundle, dioxygen, hydrocarbons, oxidore; HET: MPO EPE; 1.95A {Pseudomonas stutzeri} PDB: 2inn_E* 2inp_E
Probab=41.65 E-value=96 Score=24.12 Aligned_cols=61 Identities=20% Similarity=0.259 Sum_probs=45.9
Q ss_pred EEEEeCCCCCHHHHHHHHHHH-hCCC----CCCCCCeEEEeCCeec--CCCCcccccccCCCCeEEEE
Q 023989 13 FEIRVQPSDTVMAVKKNIEDV-QGKD----NYPCGQQLLIHNGKVL--KDETTLADNKVSEDGFLVVM 73 (274)
Q Consensus 13 ~~ieV~~~~TV~~LK~kI~~~-~g~~----~~p~~~qkLI~~GK~L--~D~~tL~d~~I~~~~~I~v~ 73 (274)
+.+-|.++++..+|-+.+-.- .+.+ .+.-+.-....+|+.. +.+++|.+.||..++.|.+.
T Consensus 40 ~~~p~pP~mpFg~lv~~vl~~~~~~hPDfa~idws~v~W~l~g~pftPD~~kSLaenG~~HKs~lrf~ 107 (119)
T 3u52_E 40 FALLVQPGMTFSALVDEILKPATAAHPDSAKADFLNAEWLLNDEPFTPKADASLKEQGIDHKSMLTVT 107 (119)
T ss_dssp EEEEECTTSBHHHHHHHTHHHHTTTSTTGGGCCTTSSEEEETTEEECCCTTSBTTTTTCCTTEEEEEE
T ss_pred eeecCCCCCCHHHHHHHhcchhhhcCCccccCCcchheEEECCccCCCChhhhHHHcCCCchheEEEe
Confidence 678899999999998876543 2310 1344455778899998 45789999999999998775
No 272
>1cuk_A RUVA protein; DNA repair, SOS response, DNA-binding, DNA recombination; 1.90A {Escherichia coli} SCOP: a.5.1.1 a.60.2.1 b.40.4.2 PDB: 1hjp_A 1bdx_A* 1c7y_A 1d8l_A
Probab=40.50 E-value=42 Score=28.31 Aligned_cols=25 Identities=8% Similarity=0.416 Sum_probs=23.2
Q ss_pred hHHHHHHHHHcCCCCCCHHHHHHHHHHh
Q 023989 153 LEQTIQQIMDMGGGTWDKETVTRALQAA 180 (274)
Q Consensus 153 ~e~~i~~i~eMG~~~f~r~qv~~ALrAa 180 (274)
.++++.-|+.+| |.+.++.+|++..
T Consensus 160 ~~ea~~AL~~LG---y~~~ea~~av~~~ 184 (203)
T 1cuk_A 160 EQEAVARLVALG---YKPQEASRMVSKI 184 (203)
T ss_dssp HHHHHHHHHHHT---CCHHHHHHHHHHS
T ss_pred HHHHHHHHHHcC---CCHHHHHHHHHHh
Confidence 478999999999 9999999999986
No 273
>2ztd_A Holliday junction ATP-dependent DNA helicase RUVA; recombination, branch migration, DNA BIND oligomerization, acidic PIN; 2.40A {Mycobacterium tuberculosis} PDB: 2ztc_A 2zte_A 2h5x_A 1bvs_A
Probab=40.32 E-value=15 Score=31.48 Aligned_cols=25 Identities=8% Similarity=0.315 Sum_probs=23.0
Q ss_pred hHHHHHHHHHcCCCCCCHHHHHHHHHHh
Q 023989 153 LEQTIQQIMDMGGGTWDKETVTRALQAA 180 (274)
Q Consensus 153 ~e~~i~~i~eMG~~~f~r~qv~~ALrAa 180 (274)
.++++.-|+.+| |.+.++.+|++..
T Consensus 164 ~~ea~~AL~~LG---y~~~ea~~av~~~ 188 (212)
T 2ztd_A 164 RSPVVEALVGLG---FAAKQAEEATDTV 188 (212)
T ss_dssp HHHHHHHHHHTT---CCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcC---CCHHHHHHHHHHH
Confidence 478999999999 9999999999876
No 274
>1n62_A Carbon monoxide dehydrogenase small chain; CODH, molybdenum, molybdopterin, oxidoreductase; HET: CUB MCN FAD; 1.09A {Oligotropha carboxidovorans} SCOP: a.56.1.1 d.15.4.2 PDB: 1n5w_A* 1n61_A* 1n60_A* 1n63_A* 1zxi_A*
Probab=38.53 E-value=23 Score=29.03 Aligned_cols=28 Identities=14% Similarity=0.363 Sum_probs=22.8
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHH
Q 023989 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKN 29 (274)
Q Consensus 1 M~I~VKtl~g~~~~ieV~~~~TV~~LK~k 29 (274)
|+|+|+ ++|+.+.++++++.||.++-..
T Consensus 4 ~~i~~~-vNG~~~~~~v~~~~tLLd~LR~ 31 (166)
T 1n62_A 4 AHIELT-INGHPVEALVEPRTLLIHFIRE 31 (166)
T ss_dssp EEEEEE-ETTEEEEEEECTTCBHHHHHHH
T ss_pred ceEEEE-ECCEEEEEecCCCCcHHHHHHH
Confidence 356676 7899999999999999986554
No 275
>2nvu_B Maltose binding protein/NEDD8-activating enzyme E1 catalytic subunit chimera; multifunction macromolecular complex, ubiquitin, ATP, conformational change, thioester, switch, adenylation, protein turnover, ligase; HET: ATP; 2.80A {Homo sapiens} SCOP: c.111.1.2 c.94.1.1
Probab=38.46 E-value=44 Score=33.59 Aligned_cols=61 Identities=13% Similarity=0.083 Sum_probs=40.6
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHhCCCCCCCC--------CeEEEeCCe--e----c--CCCCcccccccCCCCeEEEE
Q 023989 12 HFEIRVQPSDTVMAVKKNIEDVQGKDNYPCG--------QQLLIHNGK--V----L--KDETTLADNKVSEDGFLVVM 73 (274)
Q Consensus 12 ~~~ieV~~~~TV~~LK~kI~~~~g~~~~p~~--------~qkLI~~GK--~----L--~D~~tL~d~~I~~~~~I~v~ 73 (274)
...++++.+.|+.+|-+.|..+.... +..- ..+++|... . . +-+++|.+++|++|+.|.|.
T Consensus 713 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ly~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~ 789 (805)
T 2nvu_B 713 PQNIQFSPSAKLQEVLDYLTNSASLQ-MKSPAITATLEGKNRTLYLQSVTSIEERTRPNLSKTLKELGLVDGQELAVA 789 (805)
T ss_dssp CEEEEECTTSBHHHHHHHHHHCTTTC-CSSCEEEEEETTEEEEEECCSSHHHHHHHGGGGGSBTTTTTCCTTCEEEEE
T ss_pred eEEEEECCcChHHHHHHHHHhhhccC-cccceEEEEccCCCcEEEecCccchhhhhHhhhcCCHHHcCCCCCCEEEEE
Confidence 35677888889999988888853300 2111 246666532 1 1 22678999999999999885
No 276
>3hrd_D Nicotinate dehydrogenase small FES subunit; selenium ligand, iron, iron-sulfur, metal-binding, oxidoreductase; HET: MCN FAD; 2.20A {Eubacterium barkeri}
Probab=37.89 E-value=23 Score=28.90 Aligned_cols=27 Identities=15% Similarity=0.439 Sum_probs=22.4
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHH
Q 023989 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKK 28 (274)
Q Consensus 1 M~I~VKtl~g~~~~ieV~~~~TV~~LK~ 28 (274)
|+|+|+ ++|+.+.++++++.|+.++-.
T Consensus 4 ~~i~~~-vNG~~~~v~v~p~~tLLd~LR 30 (160)
T 3hrd_D 4 ITINLN-LNGEARSIVTEPNKRLLDLLR 30 (160)
T ss_dssp EEEEEE-ETTEEEEEEECSSSBHHHHHH
T ss_pred ceEEEE-ECCEEEEEecCCCCCHHHHHH
Confidence 467776 789999999999999988754
No 277
>1t3q_A Quinoline 2-oxidoreductase small subunit; QOR, molybdenum, MCD; HET: FAD MCN; 1.80A {Pseudomonas putida} SCOP: a.56.1.1 d.15.4.2
Probab=36.57 E-value=25 Score=28.60 Aligned_cols=28 Identities=14% Similarity=0.316 Sum_probs=22.9
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHHHH
Q 023989 1 MKLTVKTLKGSHFEIRVQPSDTVMAVKKN 29 (274)
Q Consensus 1 M~I~VKtl~g~~~~ieV~~~~TV~~LK~k 29 (274)
|.|+|+ ++|+.+.++++++.||.++-..
T Consensus 10 m~i~~~-ing~~~~~~v~~~~tlL~~Lr~ 37 (168)
T 1t3q_A 10 MRISAT-INGKPRVFYVEPRMHLADALRE 37 (168)
T ss_dssp EEEEEE-ETTEEEEEEECTTSBHHHHHHH
T ss_pred ceEEEE-ECCEEEEEecCCCCcHHHHHHh
Confidence 456776 7899999999999999887654
No 278
>3tve_T 50S ribosomal protein L23; RNA, ribosome, tRNA, translation, mRNA; 3.10A {Thermus thermophilus} PDB: 3pyr_T 3pyo_T 3pyv_T 3pyt_T 3tvh_T 1n88_A 1vsa_R 1vsp_R 2hgj_W 2hgq_W 2hgu_W 2j01_X 2j03_X 2jl6_X 2jl8_X 2v47_X 2v49_X 2wdi_X 2wdj_X 2wdl_X ...
Probab=36.54 E-value=67 Score=23.71 Aligned_cols=41 Identities=20% Similarity=0.217 Sum_probs=34.1
Q ss_pred CcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCe-EEEeCCeec
Q 023989 10 GSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQ-LLIHNGKVL 53 (274)
Q Consensus 10 g~~~~ieV~~~~TV~~LK~kI~~~~g~~~~p~~~q-kLI~~GK~L 53 (274)
...+.+.|+...|=.++|+.|+..++ +.+... .|+..||.=
T Consensus 21 ~n~~~F~V~~~AnK~qIK~aVe~lf~---VkV~~VnT~~~~gK~k 62 (92)
T 3tve_T 21 EGKYTFWVHPKATKTEIKNAVETAFK---VKVVKVNTLHVRGKKK 62 (92)
T ss_dssp TTEEEEEECTTCCHHHHHHHHHHHTT---CCEEEEEEEEECCCEE
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHhC---CceeeeeeeeeCCcee
Confidence 36899999999999999999999999 777766 457777643
No 279
>4fp9_B Mterf domain-containing protein 2; modification enzyme, transferase; HET: SAM; 2.90A {Homo sapiens}
Probab=36.43 E-value=25 Score=32.03 Aligned_cols=44 Identities=16% Similarity=0.386 Sum_probs=32.0
Q ss_pred CchHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCHHHH----HHH-HHcCCCC
Q 023989 151 NDLEQTIQQIMDMGGGTWDKETVTRALQAAYNNPERA----VDY-LYSGIPE 197 (274)
Q Consensus 151 ~~~e~~i~~i~eMG~~~f~r~qv~~ALrAafnNpdrA----vEy-L~~GIP~ 197 (274)
.++|..|..|.+|| |+++++.++|.....=-.+- |.| +.-|++.
T Consensus 44 ~~~e~~l~~L~d~G---fs~~~i~~il~~~P~il~~~l~~~i~~L~~LGls~ 92 (335)
T 4fp9_B 44 LELERVMSSLLDMG---FSNAHINELLSVRRGASLQQLLDIISEFILLGLNP 92 (335)
T ss_dssp HHHHHHHHHHHHTT---CCHHHHHHHHHHCSSCCHHHHHHHHHHHHHTTCCH
T ss_pred ccHHHHHHHHHHCC---CCHHHHHHHHHhCcccchhHHHHHHHHHHHcCCCH
Confidence 36899999999999 99999999999865432222 333 3347654
No 280
>2ylm_A Ubiquitin carboxyl-terminal hydrolase 7; UBL; 2.70A {Homo sapiens}
Probab=36.17 E-value=28 Score=33.72 Aligned_cols=70 Identities=13% Similarity=0.194 Sum_probs=52.8
Q ss_pred EEEEeCC--CcEEE----EEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeC----C--eecC-CCCccccc--ccCCC
Q 023989 3 LTVKTLK--GSHFE----IRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHN----G--KVLK-DETTLADN--KVSED 67 (274)
Q Consensus 3 I~VKtl~--g~~~~----ieV~~~~TV~~LK~kI~~~~g~~~~p~~~qkLI~~----G--K~L~-D~~tL~d~--~I~~~ 67 (274)
|++|-.+ .+++. +-|+.+.+|.+|-..|.+..| ++++.--++|. + ..|+ .+.|+.+. .|.+|
T Consensus 133 lFlK~yDp~~q~L~~~G~~~v~~~~kv~~l~~~i~~~~g---~p~dt~l~lyEEi~~~~ie~l~~~~~t~~~~~~eL~~G 209 (530)
T 2ylm_A 133 LFLKMYDPKTRSLNYCGHIYTPISCKIRDLLPVMCDRAG---FIQDTSLILYEEVKPNLTERIQDYDVSLDKALDELMDG 209 (530)
T ss_dssp EEEEEEETTTTEEEEEEEEEEETTCBGGGTHHHHHHHHT---CCTTCCEEEEEEEETTEEEECCCSSSBHHHHSTTCCTT
T ss_pred EEEEeeCCCCCEEEEEEEEEECCCCCHHHHHHHHHHHcC---CCCCCceEEEEecCCCceeEcccccccHHHHHhcccCC
Confidence 5666443 33432 578899999999999999999 88876555564 2 3367 47899999 99999
Q ss_pred CeEEEEec
Q 023989 68 GFLVVMLS 75 (274)
Q Consensus 68 ~~I~v~v~ 75 (274)
+.|++-..
T Consensus 210 dII~fQ~~ 217 (530)
T 2ylm_A 210 DIIVFQKD 217 (530)
T ss_dssp EEEEEEEC
T ss_pred CEEEEEec
Confidence 99887754
No 281
>3lxf_A Ferredoxin; iron, iron-sulfur, metal-binding, metal protein; 2.30A {Novosphingobium aromaticivorans} SCOP: d.15.4.0
Probab=35.64 E-value=41 Score=24.90 Aligned_cols=27 Identities=26% Similarity=0.434 Sum_probs=23.8
Q ss_pred EEEEEeCCCcEEEEEeCCCCCHHHHHH
Q 023989 2 KLTVKTLKGSHFEIRVQPSDTVMAVKK 28 (274)
Q Consensus 2 ~I~VKtl~g~~~~ieV~~~~TV~~LK~ 28 (274)
+|+|...+|+.+.|++....||.+.=.
T Consensus 2 ~vt~~~~~G~~~~~~~~~g~tll~a~~ 28 (104)
T 3lxf_A 2 AILVTTRDGTRTEIQAEPGLSLMEALR 28 (104)
T ss_dssp EEEEECTTSCEEEEECCTTSBHHHHHH
T ss_pred EEEEEeCCCCEEEEEECCCChHHHHHH
Confidence 789999999999999999999987544
No 282
>1ffv_A CUTS, iron-sulfur protein of carbon monoxide dehydrogenase; hydrolase; HET: ARO PCD FAD; 2.25A {Hydrogenophaga pseudoflava} SCOP: a.56.1.1 d.15.4.2 PDB: 1ffu_A*
Probab=34.56 E-value=30 Score=28.31 Aligned_cols=27 Identities=22% Similarity=0.378 Sum_probs=22.2
Q ss_pred EEEEEeCCCcEEEEEeCCCCCHHHHHHH
Q 023989 2 KLTVKTLKGSHFEIRVQPSDTVMAVKKN 29 (274)
Q Consensus 2 ~I~VKtl~g~~~~ieV~~~~TV~~LK~k 29 (274)
.|+|+ ++|+.+.++++++.||.++-..
T Consensus 5 ~i~~~-vNG~~~~~~v~~~~tLLd~LR~ 31 (163)
T 1ffv_A 5 IITVN-VNGKAQEKAVEPRTLLIHFLRE 31 (163)
T ss_dssp EEEEE-ETTEEEEEEECTTCBHHHHHHH
T ss_pred eEEEE-ECCEEEEEecCCCCcHHHHHHh
Confidence 56666 7899999999999999986554
No 283
>4a6q_A Histone deacetylase complex subunit SAP18; transcription, splicing, RNA metabolism, ubiquitin-like; HET: MSE; 1.50A {Mus musculus} PDB: 4a90_A* 2hde_A 4a8x_C
Probab=32.51 E-value=1.3e+02 Score=24.18 Aligned_cols=64 Identities=13% Similarity=0.163 Sum_probs=44.7
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHhCCCCCCCC----CeEEEeCC-----------------ee-cCCCCcccccccCCCCe
Q 023989 12 HFEIRVQPSDTVMAVKKNIEDVQGKDNYPCG----QQLLIHNG-----------------KV-LKDETTLADNKVSEDGF 69 (274)
Q Consensus 12 ~~~ieV~~~~TV~~LK~kI~~~~g~~~~p~~----~qkLI~~G-----------------K~-L~D~~tL~d~~I~~~~~ 69 (274)
.+.|-...+.|+.+|-..|.+.... .+.- ..+|||-. +. -+|++||.+++..-||+
T Consensus 55 ElQIYTW~daTLrEL~~Lvk~~~p~--ar~~gtrl~F~~VypD~r~~ry~~kdlGsv~~g~~~~dd~kTL~~~rF~iGDy 132 (143)
T 4a6q_A 55 ELQIYTWMDATLKELTSLVKEVYPE--ARKKGTHFNFAIVFMDLKRPGYRVKEIGSTMSGRKGTDDSMTLQSQKFQIGDY 132 (143)
T ss_dssp CEEEEECTTCBHHHHHHHHHHHCGG--GGSTTCEEEEEEEEECSSSSSEEEEEEEEEETTBCCTTTTCBTGGGTCCTTCE
T ss_pred eeEEeeCCCCCHHHHHHHHHHhCcc--ccCCCCEEEEEEEcccCCCCceeeccCCEEecCCCCCcccccHHHCCCcCCCE
Confidence 3667778999999999999887431 1111 12444422 22 25789999999999999
Q ss_pred EEEEeccC
Q 023989 70 LVVMLSKS 77 (274)
Q Consensus 70 I~v~v~k~ 77 (274)
|.|-+..+
T Consensus 133 idvaI~pP 140 (143)
T 4a6q_A 133 LDIAITPP 140 (143)
T ss_dssp EEEEEECG
T ss_pred EEEEEeCC
Confidence 99988654
No 284
>2zjr_Q 50S ribosomal protein L23; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: d.12.1.1 PDB: 1sm1_R* 2aar_R 2d3o_R 2zjp_Q* 2zjq_Q 1nkw_R 3cf5_Q* 3dll_Q* 3pio_Q* 3pip_Q* 1nwy_R* 1nwx_R* 1xbp_R* 1pnu_R 1pny_R 1vor_U 1vou_U 1vow_U 1voy_U 1vp0_U
Probab=30.41 E-value=56 Score=24.30 Aligned_cols=38 Identities=21% Similarity=0.217 Sum_probs=32.2
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeE-EEeCCee
Q 023989 12 HFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQL-LIHNGKV 52 (274)
Q Consensus 12 ~~~ieV~~~~TV~~LK~kI~~~~g~~~~p~~~qk-LI~~GK~ 52 (274)
.+.+.|+...|=.++|+.|+..++ +.+.... |++.||.
T Consensus 24 ~y~F~V~~~anK~eIK~aVE~lf~---VkV~~VNT~~~~gK~ 62 (95)
T 2zjr_Q 24 VYSFWVSPKATKTEIKDAIQQAFG---VRVIGISTMNVPGKR 62 (95)
T ss_dssp CCEEEECSSCTHHHHHHHHHHHHC---CCCSEEEECCBCCCC
T ss_pred EEEEEEcCCCCHHHHHHHHHHHhC---CCceEEEeEEeCCcc
Confidence 389999999999999999999999 7787774 4677754
No 285
>2v1y_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit alpha isoform; cancer, SH2 domain, SH3 domain, transferase, oncogen mutations, HOST-virus interaction; 2.4A {Bos taurus}
Probab=29.88 E-value=72 Score=24.35 Aligned_cols=66 Identities=20% Similarity=0.315 Sum_probs=40.9
Q ss_pred EEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCC-------CCCeEEEe---CCee--cCCC-CcccccccCCCCeEE
Q 023989 5 VKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYP-------CGQQLLIH---NGKV--LKDE-TTLADNKVSEDGFLV 71 (274)
Q Consensus 5 VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~~p-------~~~qkLI~---~GK~--L~D~-~tL~d~~I~~~~~I~ 71 (274)
+=..+|-.+.+++..+.|+.++|+.+.++-.+ +| ++.-.+.. .|.+ |.|+ +-|.++..- -..+-
T Consensus 24 ~LlPnGi~i~l~~~~~~tl~eiK~~lw~eA~~--~PL~~~L~d~~~Y~F~~in~~~e~Eel~DEsrrL~dv~pf-~piLk 100 (108)
T 2v1y_A 24 CLLPNGMIVTLECLREATLITIKHELFKEARK--YPLHQLLQDESSYIFVSVTQEAEREEFFDETRRLCDLRLF-QPFLK 100 (108)
T ss_dssp EECTTSCEEEEEEETTCBHHHHHHHHHHHGGG--STTGGGCCCGGGCEEEEEBTTSCEEEECCTTSBGGGSCBS-SSEEE
T ss_pred EEcCcEEEEEEEeeccccHHHHHHHHHHHHHh--CchHHHhCCccceEEEEecCCceEEEeEcCceEEEecccc-ceEEE
Confidence 33447888899999999999999999987432 22 22222221 2333 6554 678887665 23444
Q ss_pred EE
Q 023989 72 VM 73 (274)
Q Consensus 72 v~ 73 (274)
++
T Consensus 101 lv 102 (108)
T 2v1y_A 101 VI 102 (108)
T ss_dssp EE
T ss_pred EE
Confidence 44
No 286
>2lva_A Ubiquitin carboxyl-terminal hydrolase 28; UIM, ubiquitin interacting motif, UBA domain, NESG, northeas structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=35.48 E-value=11 Score=29.65 Aligned_cols=40 Identities=23% Similarity=0.315 Sum_probs=32.4
Q ss_pred HHHHHHHHHcCCCCCCHHHHHHHHHHhcCCHHHHHHHHHcC
Q 023989 154 EQTIQQIMDMGGGTWDKETVTRALQAAYNNPERAVDYLYSG 194 (274)
Q Consensus 154 e~~i~~i~eMG~~~f~r~qv~~ALrAafnNpdrAvEyL~~G 194 (274)
+-.+++|-|.- |.=|-.-...||+|+.+|...||.+|..-
T Consensus 19 Q~lLNQLrEIT-GIqD~~~L~~ALkAsnGdl~qAV~~LT~~ 58 (129)
T 2lva_A 19 QMLLNQLREIT-GIQDPSFLHEALKASNGDITQAVSLLTDE 58 (129)
Confidence 34688999984 34467777889999999999999999755
No 287
>3chb_D Cholera toxin; toxin/receptor complex, pentasaccharide; HET: GAL NGA SIA BGC MES; 1.25A {Vibrio cholerae} SCOP: b.40.2.1 PDB: 2chb_D* 1jr0_D* 1fgb_D 1eei_D* 1llr_D* 1md2_D* 1pzj_D* 1pzk_D* 1rcv_D* 1rd9_D* 1rdp_D* 1rf2_D* 1s5b_D 1s5c_D 1s5d_D* 1s5e_D* 1s5f_D* 1chp_D 1chq_D 1ct1_D* ...
Probab=29.11 E-value=67 Score=23.58 Aligned_cols=32 Identities=25% Similarity=0.398 Sum_probs=26.3
Q ss_pred EEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHh
Q 023989 3 LTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQ 34 (274)
Q Consensus 3 I~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~ 34 (274)
+.|...+|-+|.++|..+.-+..-|+.|+..+
T Consensus 39 viisf~ngatfqvevpgsqh~~sqk~~~ermk 70 (104)
T 3chb_D 39 AIITFKNGATFQVEVPGSQHIDSQKKAIERMK 70 (104)
T ss_dssp EEEECTTCCEEEECCCCTTSCHHHHHHHHHHH
T ss_pred EEEEecCCcEEEEecCcchhhhhhhhHHHHHH
Confidence 34555689999999999999998888888764
No 288
>3kvh_A Protein syndesmos; NUDT16-like, NUDT16L1, nudix, RNA regulation, RNA structural genomics consortium, SGC, RNA degradation, RNA B protein; 1.70A {Homo sapiens}
Probab=29.00 E-value=55 Score=28.02 Aligned_cols=44 Identities=18% Similarity=0.197 Sum_probs=39.7
Q ss_pred cCCCCchHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCHHHHHHHHH
Q 023989 147 LVAGNDLEQTIQQIMDMGGGTWDKETVTRALQAAYNNPERAVDYLY 192 (274)
Q Consensus 147 l~~g~~~e~~i~~i~eMG~~~f~r~qv~~ALrAafnNpdrAvEyL~ 192 (274)
-..|...++.+..|...| ..+++++..||+++..--..|+++|+
T Consensus 160 sFig~ar~qLl~aL~~l~--ll~~~~~~~a~~~~~~~~~~~~~~~~ 203 (214)
T 3kvh_A 160 AFVSTAKCQLLFALKVLN--MMPEEKLVEALAAATEKQKKALEKLL 203 (214)
T ss_dssp CBCTTHHHHHHHHHHHTT--SSCHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hhHHHHHHHHHHHHHHcC--CCCHHHHHHHHHhccCcchhHHHhhC
Confidence 355888999999999999 45999999999999999999999995
No 289
>2cu1_A Mitogen-activated protein kinase kinase kinase 2; PB1 domain, MAPK/ERK kinase kinase 2, MEK kinase 2, MEKK 2, signaling protein; NMR {Homo sapiens} SCOP: d.15.2.2
Probab=28.30 E-value=1.5e+02 Score=22.42 Aligned_cols=44 Identities=11% Similarity=0.059 Sum_probs=35.6
Q ss_pred EEEEeC-CCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCCee
Q 023989 3 LTVKTL-KGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKV 52 (274)
Q Consensus 3 I~VKtl-~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~~p~~~qkLI~~GK~ 52 (274)
|.||.- .|++..|.|.-.-+.++|..++...+| ..+-|.|-...
T Consensus 9 vRiKfE~~GEkRIi~f~RPv~f~eL~~Kv~~~fG------q~ldL~y~n~E 53 (103)
T 2cu1_A 9 VRVKFEHRGEKRILQFPRPVKLEDLRSKAKIAFG------QSMDLHYTNNE 53 (103)
T ss_dssp EEEEEEETTEEEEEEEESSCCHHHHHHHHHHHHS------SCEEEEECSSS
T ss_pred EEEEEEecCeEEEEeccCCccHHHHHHHHHHHhC------CeeeEEEecce
Confidence 555543 678899999999999999999999999 36677776544
No 290
>2i1s_A Hypothetical protein; methanosarcina mazei,MAD, PSI-2,MCSG, structural genomics, protein structure initiative; 2.30A {Methanosarcina mazei} SCOP: d.343.1.1
Probab=28.15 E-value=1.7e+02 Score=23.94 Aligned_cols=22 Identities=27% Similarity=0.380 Sum_probs=21.1
Q ss_pred EEEeCCCCCHHHHHHHHHHHhC
Q 023989 14 EIRVQPSDTVMAVKKNIEDVQG 35 (274)
Q Consensus 14 ~ieV~~~~TV~~LK~kI~~~~g 35 (274)
.|.|..+.|..+|...|....|
T Consensus 25 ri~Vp~~~TL~~LH~vIq~afg 46 (188)
T 2i1s_A 25 RIQVPENYTFLDLHKAIQAVMD 46 (188)
T ss_dssp EEEEETTCBHHHHHHHHHHHTT
T ss_pred EEEECCCCCHHHHHHHHHHHhC
Confidence 5899999999999999999999
No 291
>3tca_A Amyloid beta A4 precursor protein-binding family 1-interacting protein; RA domain, RBD, PH domain; 2.35A {Mus musculus}
Probab=27.74 E-value=1.1e+02 Score=25.86 Aligned_cols=34 Identities=15% Similarity=0.049 Sum_probs=28.4
Q ss_pred EEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCC
Q 023989 3 LTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGK 36 (274)
Q Consensus 3 I~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~ 36 (274)
|.|-..+|....|.|+++.|+.+|-+.|..+.++
T Consensus 37 v~v~~~d~~~k~i~v~~~~ta~ev~~~L~~k~~~ 70 (291)
T 3tca_A 37 VKVHMDDSSTKSLMVDERQLARDVLDNLFEKTHC 70 (291)
T ss_dssp EEEECTTSCEEEEEEETTCBHHHHHHHHHHHHCC
T ss_pred EEEEcCCCceEEEEeCCCCcHHHHHHHHHHHhCC
Confidence 4444557778889999999999999999999883
No 292
>1pqs_A Cell division control protein 24; alpha and beta protein, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1tz1_A
Probab=27.63 E-value=50 Score=23.60 Aligned_cols=36 Identities=8% Similarity=-0.057 Sum_probs=28.1
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHhCCCCCC-----CCCeEEEeCC
Q 023989 12 HFEIRVQPSDTVMAVKKNIEDVQGKDNYP-----CGQQLLIHNG 50 (274)
Q Consensus 12 ~~~ieV~~~~TV~~LK~kI~~~~g~~~~p-----~~~qkLI~~G 50 (274)
.+.|.|.++.+..+|..+|..+.+ .. ....+|-|+.
T Consensus 3 ~~~i~V~~~i~f~~L~~kI~~kl~---~~~~~~~~~~~~lkYkD 43 (77)
T 1pqs_A 3 IFTLLVEKVWNFDDLIMAINSKIS---NTHNNNISPITKIKYQD 43 (77)
T ss_dssp EEEEECTTCCCSHHHHHHHHHHTT---TTTSSCSCSTTCCEEEE
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHc---ccccccccceeEEEEEc
Confidence 578899999999999999999988 32 2445666644
No 293
>1rm6_C 4-hydroxybenzoyl-COA reductase gamma subunit; xanthine oxidase family, dimer heterotrimers, oxidoreductase; HET: PCD FAD SF4 EPE; 1.60A {Thauera aromatica} SCOP: a.56.1.1 d.15.4.2 PDB: 1sb3_C*
Probab=27.52 E-value=38 Score=27.46 Aligned_cols=27 Identities=19% Similarity=0.171 Sum_probs=21.9
Q ss_pred EEEEeCCCcEEEEEeCCCCCHHHHHHHH
Q 023989 3 LTVKTLKGSHFEIRVQPSDTVMAVKKNI 30 (274)
Q Consensus 3 I~VKtl~g~~~~ieV~~~~TV~~LK~kI 30 (274)
|+|+ ++|+.+.++++++.||.++-..+
T Consensus 5 i~~~-vNG~~~~v~~~~~~tLL~~Lr~~ 31 (161)
T 1rm6_C 5 LRLT-LNGRAREDLVPDNMLLLDYLRET 31 (161)
T ss_dssp EEEE-ETTEEEEEEEETTCBHHHHHHHT
T ss_pred EEEE-ECCEEEEEecCCcCcHHHHHHHc
Confidence 5555 69999999999999998876554
No 294
>1ibx_B Chimera of IGG binding protein G and DNA fragmentation factor 45; DFF40, DFF45, protein-protein complex, CIDE, CIDE domain complex; HET: DNA; NMR {Streptococcus SP} SCOP: d.15.2.1
Probab=25.59 E-value=40 Score=27.17 Aligned_cols=49 Identities=12% Similarity=0.163 Sum_probs=32.7
Q ss_pred CCHHHHHHHHHHHhCCCCCCC--CCeEEEe--CCeecCCCCcccccccCCCCeEEEEec
Q 023989 21 DTVMAVKKNIEDVQGKDNYPC--GQQLLIH--NGKVLKDETTLADNKVSEDGFLVVMLS 75 (274)
Q Consensus 21 ~TV~~LK~kI~~~~g~~~~p~--~~qkLI~--~GK~L~D~~tL~d~~I~~~~~I~v~v~ 75 (274)
.++++|+.|...+.+ ++. ...+|+. .|.+++|+.-+..+ .+ +++.|++.
T Consensus 82 ~SL~EL~~K~~~kL~---l~~~~~~~~LvLeeDGTeVddEeYF~tL--p~-nT~LmvL~ 134 (145)
T 1ibx_B 82 SCLEDLRSKACDILA---IDKSLTPVTLVLAEDGTIVDDDDYFLCL--PS-NTKFVALA 134 (145)
T ss_dssp SSHHHHHHHHHHHHT---CSCTTSCCEEEETTTCCBCSSHHHHHHS--CS-SCBEEEEC
T ss_pred CCHHHHHHHHHHHhc---CCCCccccEEEEeeCCcEEechhHhhcC--CC-CCEEEEEC
Confidence 589999999999998 654 3556653 68888877654443 34 44444443
No 295
>1ixr_A Holliday junction DNA helicase RUVA; heterooligomeric complex, octameric RUVA, AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ANP; 3.30A {Thermus thermophilus} SCOP: a.60.2.1 b.40.4.2
Probab=25.35 E-value=15 Score=30.89 Aligned_cols=26 Identities=8% Similarity=0.273 Sum_probs=0.0
Q ss_pred hHHHHHHHHHcCCCCCCHHHHHHHHHHhc
Q 023989 153 LEQTIQQIMDMGGGTWDKETVTRALQAAY 181 (274)
Q Consensus 153 ~e~~i~~i~eMG~~~f~r~qv~~ALrAaf 181 (274)
.++++.-|+.+| |.+.++.+|++...
T Consensus 146 ~~ea~~AL~~LG---y~~~ea~~av~~~~ 171 (191)
T 1ixr_A 146 AEEAVMALAALG---FKEAQARAVVLDLL 171 (191)
T ss_dssp -----------------------------
T ss_pred HHHHHHHHHHcC---CCHHHHHHHHHHHH
Confidence 367999999999 99999999998764
No 296
>1pgy_A SWA2P; UBA, ubiquitin, auxilin, ubiquitin-associated domain, protein binding; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=24.60 E-value=41 Score=21.71 Aligned_cols=25 Identities=20% Similarity=0.496 Sum_probs=18.7
Q ss_pred HHHHHHHHHcCCCCCCHHHHHHHHHHhcCCHHHHHHHHHcCC
Q 023989 154 EQTIQQIMDMGGGTWDKETVTRALQAAYNNPERAVDYLYSGI 195 (274)
Q Consensus 154 e~~i~~i~eMG~~~f~r~qv~~ALrAafnNpdrAvEyL~~GI 195 (274)
+=-|..||++| + +-|.|.+|--.||
T Consensus 8 DmEiAkLMSLG---l--------------~id~A~~~Ye~gi 32 (47)
T 1pgy_A 8 DMEIARLMSLG---L--------------SIEEATEFYENDV 32 (47)
T ss_dssp HHHHHHHHHHC---C--------------CSHHHHHHHHHHC
T ss_pred HHHHHHHHHcc---C--------------ChhhHHHHHHcCc
Confidence 44588999999 5 4677888887776
No 297
>2wlb_A ETP1-FD, electron transfer protein 1, mitochondrial; iron-sulfur, iron, transport, ferredoxin, adrenodoxin-like, electron transport; 2.60A {Schizosaccharomyces pombe}
Probab=23.92 E-value=84 Score=22.76 Aligned_cols=28 Identities=18% Similarity=0.283 Sum_probs=22.2
Q ss_pred EEEEEeCCCcEEEEEeCCCCCHHHHHHH
Q 023989 2 KLTVKTLKGSHFEIRVQPSDTVMAVKKN 29 (274)
Q Consensus 2 ~I~VKtl~g~~~~ieV~~~~TV~~LK~k 29 (274)
+|+|...+|+...|++.+..||.+.=..
T Consensus 5 ~v~~~~~~g~~~~~~~~~g~tlL~a~~~ 32 (103)
T 2wlb_A 5 KVFFVTPEGREIMIEGNEGDSILDLAHA 32 (103)
T ss_dssp EEEEECTTCCEEEEEECTTCBHHHHHHH
T ss_pred EEEEEeCCCCEEEEEECCCCHHHHHHHH
Confidence 5777767888889999999999876433
No 298
>2nnz_A Hypothetical protein; beta-barrel, structural genomics, ontario centre for structu proteomics, OCSP, unknown function; NMR {Archaeoglobus fulgidus}
Probab=23.84 E-value=31 Score=27.96 Aligned_cols=28 Identities=21% Similarity=0.383 Sum_probs=23.2
Q ss_pred CEEEEEeCCCcEEEEEeCCCC---CHHHHHHH
Q 023989 1 MKLTVKTLKGSHFEIRVQPSD---TVMAVKKN 29 (274)
Q Consensus 1 M~I~VKtl~g~~~~ieV~~~~---TV~~LK~k 29 (274)
|+|.|+ ..+++|..++..+. |+++|.++
T Consensus 30 ~~I~i~-~~~~~~~a~L~D~~aP~Ta~~f~~~ 60 (153)
T 2nnz_A 30 MRLRIR-FESAECEVELYEEWAPETVRAIADA 60 (153)
T ss_dssp CCEEEE-ETTEEEEECCCTTSCHHHHHHHHHT
T ss_pred eEEEEE-ECCEEEEEEEcCCCCHHHHHHHHHh
Confidence 678777 56788999999998 99998875
No 299
>2lgx_A Fermitin family homolog 2; kindlin, membrane, integrin activation, cell adhesion; NMR {Homo sapiens}
Probab=23.61 E-value=34 Score=26.33 Aligned_cols=71 Identities=15% Similarity=0.117 Sum_probs=47.9
Q ss_pred EEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCeEEEeCC---eecCCCCcccccccCCCCeEEEEec
Q 023989 3 LTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNG---KVLKDETTLADNKVSEDGFLVVMLS 75 (274)
Q Consensus 3 I~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~g~~~~p~~~qkLI~~G---K~L~D~~tL~d~~I~~~~~I~v~v~ 75 (274)
|+|..++ ..++++|..+.-|+.|.-+|-++.... -.-+..-|-.-- ..|+-..||..|||+-+..+++.-.
T Consensus 29 V~V~d~~-~~~~lrV~GdlHIGGvmLkLVE~i~i~-~dWSDhaLWWp~k~~WLlkt~~tLDk~giqADa~L~ftp~ 102 (112)
T 2lgx_A 29 VHVTDVN-RDVTLRVTGEVHIGGVMLKLVEKLDVK-KDWSDHALWWEKKRTWLLKTHWTLDKYGIQADAKLQFTPQ 102 (112)
T ss_dssp CCBTTTT-BCCEECCCTTSCHHHHHHHHHHHCCSC-CCSSSSBEEETTTTEEECCTTSCHHHHTCCTTCBBCBBC-
T ss_pred EEEecCC-ccEEEEEeeccccccchhhhhhhhccc-ccchHhhhhhhhhchhhhcchhhHhhhceeccccceecCC
Confidence 4444433 667889999999999999999876510 112233333322 3468889999999999988877643
No 300
>2yrv_A AT-rich interactive domain-containing protein 4A; ARID domain-containing protein 4A, retinoblastoma-binding protein 1, RBBP-1, structural genomics; NMR {Homo sapiens}
Probab=23.59 E-value=39 Score=26.31 Aligned_cols=26 Identities=12% Similarity=0.276 Sum_probs=19.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHcC-CCCcccc
Q 023989 173 VTRALQAAYNNPERAVDYLYSG-IPETAEV 201 (274)
Q Consensus 173 v~~ALrAafnNpdrAvEyL~~G-IP~~~~~ 201 (274)
+..+||.|| |||++||-+| ||++-..
T Consensus 78 ~d~slK~a~---d~A~~fl~~~~lP~~W~~ 104 (117)
T 2yrv_A 78 SELSTKPGL---QKASIFLKTRVVPDNWKM 104 (117)
T ss_dssp HHHHHCHHH---HHHHHHHHTCCCCTTTCC
T ss_pred CchhHHHHH---HHHHHHHhcCCCCCcccc
Confidence 345677664 7999999999 8987544
No 301
>2bt6_A Adrenodoxin 1; ruthenium(II) bipyridyl complex, intramolecular electron TRA electron transport, metal-binding; HET: RUA; 1.50A {Bos taurus} SCOP: d.15.4.1 PDB: 1ayf_A 3n9y_C* 2jqr_B* 3na0_C*
Probab=23.41 E-value=69 Score=23.53 Aligned_cols=26 Identities=12% Similarity=0.221 Sum_probs=21.1
Q ss_pred EEEEEeCCCcEEEEEeCCCCCHHHHH
Q 023989 2 KLTVKTLKGSHFEIRVQPSDTVMAVK 27 (274)
Q Consensus 2 ~I~VKtl~g~~~~ieV~~~~TV~~LK 27 (274)
+|+|...+|+.+.|++....||.+.=
T Consensus 8 ~V~~~~~~g~~~~v~~~~g~tLL~aa 33 (108)
T 2bt6_A 8 TVHFINRDGETLTTKGKIGDSLLDVV 33 (108)
T ss_dssp EEEEECTTSCEEEEEEETTCBHHHHH
T ss_pred EEEEECCCCCEEEEEECCCChHHHHH
Confidence 57777678888899999999998653
No 302
>2kkc_A Sequestosome-1; P62, PB1, autophagy, ubiquitin-proteasome system, NF-KB signaling, alternative splicing, apoptosis, cytoplasm, differentiation; NMR {Rattus norvegicus} PDB: 2ktr_B
Probab=23.12 E-value=1.2e+02 Score=22.82 Aligned_cols=28 Identities=4% Similarity=-0.143 Sum_probs=21.1
Q ss_pred CCHHHHHHHHHHHhCCCCCCCCCeEEEeCC
Q 023989 21 DTVMAVKKNIEDVQGKDNYPCGQQLLIHNG 50 (274)
Q Consensus 21 ~TV~~LK~kI~~~~g~~~~p~~~qkLI~~G 50 (274)
.|...|+.+|...+.. +......|.|..
T Consensus 42 ~s~~~L~~~V~~lFp~--l~~~~f~l~Y~D 69 (102)
T 2kkc_A 42 GPCERLLSRVAVLFPA--LRPGGFQAHYRA 69 (102)
T ss_dssp CHHHHHHHHHHHHCTT--SCSSCEEEEEEC
T ss_pred ccHHHHHHHHHHHccc--cCCCcEEEEEEC
Confidence 4899999999999641 445567888864
No 303
>2ktr_A Sequestosome-1; autophagy, NF-KB signaling, HOMO-oligomer, PB1 dimer, signaling protein, transport protein; NMR {Rattus norvegicus}
Probab=22.35 E-value=1.1e+02 Score=23.77 Aligned_cols=28 Identities=4% Similarity=-0.155 Sum_probs=21.3
Q ss_pred CCHHHHHHHHHHHhCCCCCCCCCeEEEeCC
Q 023989 21 DTVMAVKKNIEDVQGKDNYPCGQQLLIHNG 50 (274)
Q Consensus 21 ~TV~~LK~kI~~~~g~~~~p~~~qkLI~~G 50 (274)
.+...|+.+|...+.. +......|.|..
T Consensus 57 ~s~~~L~~kV~~lFp~--L~~~~f~l~YkD 84 (117)
T 2ktr_A 57 GPSERLLSRVAVLFPA--LRPGGFQAHYRA 84 (117)
T ss_dssp CHHHHHHHHHHHHCTT--SCSSCEEEEEEC
T ss_pred CCHHHHHHHHHHHccc--cCCCcEEEEEEC
Confidence 4899999999999741 445567888854
No 304
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=22.28 E-value=54 Score=29.92 Aligned_cols=37 Identities=19% Similarity=0.488 Sum_probs=27.5
Q ss_pred HHHHHHHHcCCCCCCHHHHHHHHH-------HhcCCHHHHHHHHHcC
Q 023989 155 QTIQQIMDMGGGTWDKETVTRALQ-------AAYNNPERAVDYLYSG 194 (274)
Q Consensus 155 ~~i~~i~eMG~~~f~r~qv~~ALr-------AafnNpdrAvEyL~~G 194 (274)
..|+.-++|| |++..|+++++ -.|...+.=|+=|+..
T Consensus 121 ~~v~~~l~mG---f~~~~v~~~~~~~~~~~g~~~~~~~~lv~~~l~~ 164 (345)
T 3t6p_A 121 PVVKSALEMG---FNRDLVKQTVQSKILTTGENYKTVNDIVSALLNA 164 (345)
T ss_dssp HHHHHHHHTT---CCHHHHHHHHHHHHHHHSSCCCSHHHHHHHHHHH
T ss_pred HHHHHHHHhc---ccHHHHHHHHHHHHHhcCCCcCCHHHHHHHHHhc
Confidence 6789999999 99999999987 2455555555555533
No 305
>3k6g_A Telomeric repeat-binding factor 2-interacting Pro; helix, chromosomal protein, nucleus, phosphoprotein, telomer cycle, DNA-binding, protein binding; 1.95A {Homo sapiens}
Probab=22.09 E-value=1.3e+02 Score=22.81 Aligned_cols=37 Identities=32% Similarity=0.422 Sum_probs=31.1
Q ss_pred HHHHHHH-cCCCCCCHHHHHHHHHHhcCCHHHHHHHHHcCC
Q 023989 156 TIQQIMD-MGGGTWDKETVTRALQAAYNNPERAVDYLYSGI 195 (274)
Q Consensus 156 ~i~~i~e-MG~~~f~r~qv~~ALrAafnNpdrAvEyL~~GI 195 (274)
.|.+||+ .. -+=-.|.+||--.-.+..+|-.||++|+
T Consensus 16 ~i~~lMeef~---~DL~sVTqAlLK~SGel~at~~fL~~~~ 53 (111)
T 3k6g_A 16 IIRQLMEKFN---LDLSTVTQAFLKNSGELEATSAFLASGQ 53 (111)
T ss_dssp HHHHHHHHTT---CCHHHHHHHHHHTTTCHHHHHHHHHHSS
T ss_pred HHHHHHHHHh---hhHHHHHHHHHHccccHHHHHHHHhCCC
Confidence 4444444 57 7999999999999999999999999996
No 306
>2kw6_A Cyclin-dependent kinase 2-associated protein 1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Homo sapiens}
Probab=21.89 E-value=38 Score=23.57 Aligned_cols=36 Identities=19% Similarity=0.460 Sum_probs=29.8
Q ss_pred CCchHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCHHHHHHHHHcCC
Q 023989 150 GNDLEQTIQQIMDMGGGTWDKETVTRALQAAYNNPERAVDYLYSGI 195 (274)
Q Consensus 150 g~~~e~~i~~i~eMG~~~f~r~qv~~ALrAafnNpdrAvEyL~~GI 195 (274)
-+.|.+.+.-|.||| +=+|-.|-.--.+.|-|..||
T Consensus 10 ~~kY~~LL~VIeEmg----------kdIrpTYaGsk~~~ERLkR~I 45 (65)
T 2kw6_A 10 HSKYAELLAIIEELG----------KEIRPTYAGSKSAMERLKRGI 45 (65)
T ss_dssp SCHHHHHHHHHHHHT----------TTHHHHHTTCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHh----------cccchhhccCcchHHHHHHHH
Confidence 468999999999999 556777777777888888886
No 307
>3fe3_A MAP/microtubule affinity-regulating kinase 3; serine/threonine protein kinase, MARK;PAR-1, UBA domai TAK1;P78;MARK3, ATP-binding; 1.90A {Homo sapiens} PDB: 2qnj_A 1y8g_A* 1zmw_A 1zmu_A 1zmv_A 2wzj_A 2r0i_A 2hak_A 3iec_A
Probab=21.75 E-value=1.1e+02 Score=26.74 Aligned_cols=37 Identities=19% Similarity=0.302 Sum_probs=31.4
Q ss_pred hHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCHHHHHHHHH
Q 023989 153 LEQTIQQIMDMGGGTWDKETVTRALQAAYNNPERAVDYLY 192 (274)
Q Consensus 153 ~e~~i~~i~eMG~~~f~r~qv~~ALrAafnNpdrAvEyL~ 192 (274)
.+..+..+..|| |+++++...|+.--+|--.|.=|||
T Consensus 289 ~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~y~ll 325 (328)
T 3fe3_A 289 DQKRIDIMVGMG---YSQEEIQESLSKMKYDEITATYLLL 325 (328)
T ss_dssp CHHHHHHHHHTT---CCHHHHHHHHHTTCCSHHHHHHHHH
T ss_pred cHHHHHHHHHCC---CCHHHHHHHHHcCCCCHHHHHHHHh
Confidence 466788899999 9999999999998888777776665
No 308
>1uwm_A Ferredoxin VI, FDVI; electron transport, metal-binding, iron-sulfur, iron, 2Fe-2S; 2.0A {Rhodobacter capsulatus} SCOP: d.15.4.1 PDB: 1e9m_A
Probab=21.28 E-value=1.1e+02 Score=22.15 Aligned_cols=27 Identities=26% Similarity=0.405 Sum_probs=22.2
Q ss_pred CEEEEEeCCCcEEEEEeCCCCCHHHHH
Q 023989 1 MKLTVKTLKGSHFEIRVQPSDTVMAVK 27 (274)
Q Consensus 1 M~I~VKtl~g~~~~ieV~~~~TV~~LK 27 (274)
.+|+|...+|+...|++....||.+.=
T Consensus 1 ~~v~~~~~~g~~~~~~~~~g~tlL~aa 27 (106)
T 1uwm_A 1 AKIIFIEHNGTRHEVEAKPGLTVMEAA 27 (106)
T ss_dssp CEEEEECTTCCEEEEECCTTSBHHHHH
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHH
Confidence 368887778888889999999998754
No 309
>1ltr_D ETB-R2, heat-labIle enterotoxin; B subunit, anti-HSV; 3.04A {Escherichia coli} SCOP: b.40.2.1
Probab=21.23 E-value=81 Score=23.46 Aligned_cols=32 Identities=25% Similarity=0.422 Sum_probs=25.5
Q ss_pred EEEEeCCCcEEEEEeCCCCCHHHHHHHHHHHh
Q 023989 3 LTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQ 34 (274)
Q Consensus 3 I~VKtl~g~~~~ieV~~~~TV~~LK~kI~~~~ 34 (274)
+.|...+|-+|.++|..+.-+..-|+.|+..+
T Consensus 38 viisf~ngatfqvevpgsqh~~sqk~~~ermk 69 (113)
T 1ltr_D 38 VIITFKSGATFQVEVPGSQHIDSQKKAIERMK 69 (113)
T ss_dssp EEEECTTSCEEEECCCSTTSCSHHHHHHHHHH
T ss_pred EEEEecCCcEEEEecCcchhhhhhhhHHHHHH
Confidence 34555689999999999998888888877664
No 310
>1tt5_B Ubiquitin-activating enzyme E1C isoform 1; cell cycle, ligase; 2.60A {Homo sapiens} SCOP: c.111.1.2 PDB: 3dbl_B 3dbr_B 3dbh_B 3gzn_B* 1yov_B 1r4m_B 1r4n_B*
Probab=20.98 E-value=32 Score=32.46 Aligned_cols=60 Identities=13% Similarity=0.122 Sum_probs=27.3
Q ss_pred EEEeCCCCCHHHHHHHHHHHhC--CCCCCCC-----CeEEEeCCe--ecC------CCCcccccccCCCCeEEEE
Q 023989 14 EIRVQPSDTVMAVKKNIEDVQG--KDNYPCG-----QQLLIHNGK--VLK------DETTLADNKVSEDGFLVVM 73 (274)
Q Consensus 14 ~ieV~~~~TV~~LK~kI~~~~g--~~~~p~~-----~qkLI~~GK--~L~------D~~tL~d~~I~~~~~I~v~ 73 (274)
.++++.+.|+.+|-+.|..+.. ....... ..+++|... .|+ -+++|.+++|++|+.|.|.
T Consensus 344 ~~~~~~~~tl~~~~~~l~~~~~~~~~~~~is~~~~~~~~~ly~~~~~~~~~~~~~~l~~~l~~l~~~~g~~~~v~ 418 (434)
T 1tt5_B 344 NIQFSPSAKLQEVLDYLTNSASLQMKSPAITATLEGKNRTLYLQSVTSIEERTRPNLSKTLKELGLVDGQELAVA 418 (434)
T ss_dssp CCCC-----CTTHHHHHHHCSSCCCSSCCCEET----TEECCCCCCTTTTTTSCC-CCC-----CCCSSCCEECC
T ss_pred eEEECCCccHHHHHHHHhccCccceEccEEEEEccCCCcEEEecCCcchhhhhHhhhcCCHHHcCCCCCCEEEEE
Confidence 3455556677777777776522 1101111 246677532 222 2578999999999998764
No 311
>1d4b_A CIDE B, human cell death-inducing effector B; alpha/beta roll, apoptosis; NMR {Homo sapiens} SCOP: d.15.2.1
Probab=20.81 E-value=38 Score=26.57 Aligned_cols=48 Identities=15% Similarity=0.117 Sum_probs=32.7
Q ss_pred CCHHHHHHHHHHHhCCCCCCCCCeEEEe--CCeecCCCCcccccccCCCCeEEEEec
Q 023989 21 DTVMAVKKNIEDVQGKDNYPCGQQLLIH--NGKVLKDETTLADNKVSEDGFLVVMLS 75 (274)
Q Consensus 21 ~TV~~LK~kI~~~~g~~~~p~~~qkLI~--~GK~L~D~~tL~d~~I~~~~~I~v~v~ 75 (274)
.+.++|+.|..++.+ + ....+|+. .|.+++|+.-+..+ . ++++.+++.
T Consensus 54 ~SL~EL~~K~~~~l~---l-~~~~~lvLeeDGT~VddEeYF~tL--p-~nT~lmvL~ 103 (122)
T 1d4b_A 54 ATRQELLAKALETLL---L-NGVLTLVLEEDGTAVDSEDFFQLL--E-DDTCLMVLQ 103 (122)
T ss_dssp CCSSTHHHHHHHHHS---C-CSSCEEEETTTTEEECSTHHHHHS--S-SCCCCCEEC
T ss_pred CCHHHHHHHHHHHhc---c-CCCcEEEEEeCCcEEechhHhhcC--C-CCCEEEEec
Confidence 478999999999998 7 35556654 69999887655543 2 344444443
No 312
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=20.49 E-value=46 Score=29.22 Aligned_cols=27 Identities=33% Similarity=0.390 Sum_probs=24.3
Q ss_pred CCHHHHHHHHHHhcCCHHHHHHHHHcCCC
Q 023989 168 WDKETVTRALQAAYNNPERAVDYLYSGIP 196 (274)
Q Consensus 168 f~r~qv~~ALrAafnNpdrAvEyL~~GIP 196 (274)
|||+.+.+||+...+|..+|.+.| ||.
T Consensus 268 ~e~~~i~~~l~~~~gn~~~aA~~L--gi~ 294 (304)
T 1ojl_A 268 VEKEVILAALEKTGGNKTEAARQL--GIT 294 (304)
T ss_dssp HHHHHHHHHHHTTTTCHHHHHHHH--TSC
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHH--CcC
Confidence 678899999999999999999998 774
No 313
>2hjj_A Hypothetical protein YKFF; northeast structural genomics consortium (NESG), PROT structure initiative., PSI-2, structural genomics, unknown; NMR {Escherichia coli} SCOP: d.50.3.3
Probab=20.38 E-value=54 Score=24.02 Aligned_cols=19 Identities=21% Similarity=0.478 Sum_probs=12.4
Q ss_pred CCCCCHHHHHHHHHHhcCCH
Q 023989 165 GGTWDKETVTRALQAAYNNP 184 (274)
Q Consensus 165 ~~~f~r~qv~~ALrAafnNp 184 (274)
-|.|.|+|.+ |.-++|.|.
T Consensus 9 egpFtReQA~-aV~~~Y~NV 27 (87)
T 2hjj_A 9 PGPFTRRQAQ-AVTTTYSNI 27 (87)
T ss_dssp -CCCCHHHHH-HHHHHCTTE
T ss_pred CCCccHHHHH-HHHHHhccc
Confidence 4689999954 455566653
Done!