BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 023991
(274 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9SAI2|CAF1F_ARATH Probable CCR4-associated factor 1 homolog 6 OS=Arabidopsis thaliana
GN=CAF1-6 PE=2 SV=1
Length = 274
Score = 460 bits (1184), Expect = e-129, Method: Compositional matrix adjust.
Identities = 215/271 (79%), Positives = 244/271 (90%)
Query: 1 MSLLPKGDSIQIREVWSDNLELEFDLIRKIVDDYPYVAMDTEFPGIALRPVGSFKSSYEY 60
MSL K DSIQIREVW+DNL+ E DLIR +VDD+PYVAMDTEFPGI +RPVG+FKS+ +Y
Sbjct: 1 MSLFLKDDSIQIREVWNDNLQEEMDLIRDVVDDFPYVAMDTEFPGIVVRPVGTFKSNADY 60
Query: 61 HYQTLKSNVDMLKLIQLGLTFSDENGNLPTCGTDKYCVWQFNFREFDVNEDIFANDSIEL 120
HY+TLK+NV++LK+IQLGLTFS+E GNLPTCGTDKYC+WQFNFREFD++ DIFA DSIEL
Sbjct: 61 HYETLKTNVNILKMIQLGLTFSNEQGNLPTCGTDKYCIWQFNFREFDLDSDIFALDSIEL 120
Query: 121 LKQSGINFTKNNEIGIDAMRFGEFMMSSGIVLSDSMHWVTFHSGYDFGYLLKLLTCQNLP 180
LKQSGI+ KN GID+ RF E +MSSGIVL++++HWVTFHSGYDFGYLLKLLTCQNLP
Sbjct: 121 LKQSGIDLAKNTLDGIDSKRFAELLMSSGIVLNENVHWVTFHSGYDFGYLLKLLTCQNLP 180
Query: 181 DTQVEFFNLIRIYFPTVYDIKHLMKFCNSLHGGLNKLAELLEVERVGICHQAGSDSLLTA 240
D+Q +FF LI +YFPTVYDIKHLMKFCNSLHGGLNKLAELLEVERVGICHQAGSDSLLT+
Sbjct: 181 DSQTDFFKLINVYFPTVYDIKHLMKFCNSLHGGLNKLAELLEVERVGICHQAGSDSLLTS 240
Query: 241 STFRKLKENFFSSSLEKYAGVLYGLGVENGQ 271
TFRKLKENFF L KY+GVLYGLGVENGQ
Sbjct: 241 CTFRKLKENFFVGPLHKYSGVLYGLGVENGQ 271
>sp|Q9SKZ2|CAF1G_ARATH Probable CCR4-associated factor 1 homolog 7 OS=Arabidopsis thaliana
GN=CAF1-7 PE=2 SV=2
Length = 275
Score = 459 bits (1180), Expect = e-128, Method: Compositional matrix adjust.
Identities = 214/275 (77%), Positives = 246/275 (89%), Gaps = 1/275 (0%)
Query: 1 MSLLPKGDSIQIREVWSDNLELEFDLIRKIVDDYPYVAMDTEFPGIALRPVGSFKSSYEY 60
MSL K DSIQIREVW+DNLE E LIR++VDD+P+VAMDTEFPGI RPVG+FK++ EY
Sbjct: 1 MSLFLKDDSIQIREVWNDNLESEMALIREVVDDFPFVAMDTEFPGIVCRPVGTFKTNTEY 60
Query: 61 HYQTLKSNVDMLKLIQLGLTFSDENGNLPTCGTD-KYCVWQFNFREFDVNEDIFANDSIE 119
HY+TLK+NV++LK+IQLGLTFSDE GNLPTCGTD KYC+WQFNFREFD+ DI+A DSIE
Sbjct: 61 HYETLKTNVNILKMIQLGLTFSDEKGNLPTCGTDNKYCIWQFNFREFDLESDIYATDSIE 120
Query: 120 LLKQSGINFTKNNEIGIDAMRFGEFMMSSGIVLSDSMHWVTFHSGYDFGYLLKLLTCQNL 179
LL+QSGI+F KNNE GID+ RF E +MSSGIVL++++HWVTFHSGYDFGYLLKLLTCQNL
Sbjct: 121 LLRQSGIDFVKNNEFGIDSKRFAELLMSSGIVLNENVHWVTFHSGYDFGYLLKLLTCQNL 180
Query: 180 PDTQVEFFNLIRIYFPTVYDIKHLMKFCNSLHGGLNKLAELLEVERVGICHQAGSDSLLT 239
P+TQ FF +I +YFP VYDIKHLMKFCNSLHGGLNKLAELL+VERVGICHQAGSDSLLT
Sbjct: 181 PETQTGFFEMISVYFPRVYDIKHLMKFCNSLHGGLNKLAELLDVERVGICHQAGSDSLLT 240
Query: 240 ASTFRKLKENFFSSSLEKYAGVLYGLGVENGQNTH 274
+ TFRKL+ENFF S+EKY+GVLYGLGVENGQ H
Sbjct: 241 SCTFRKLQENFFIGSMEKYSGVLYGLGVENGQIVH 275
>sp|Q9LEU4|CAF1J_ARATH Probable CCR4-associated factor 1 homolog 10 OS=Arabidopsis
thaliana GN=CAF1-10 PE=2 SV=1
Length = 277
Score = 408 bits (1048), Expect = e-113, Method: Compositional matrix adjust.
Identities = 191/273 (69%), Positives = 227/273 (83%)
Query: 1 MSLLPKGDSIQIREVWSDNLELEFDLIRKIVDDYPYVAMDTEFPGIALRPVGSFKSSYEY 60
M+ K DSI IREVW NL EF LIR+IVD + Y+AMDTEFPG+ L+PV +FK + +
Sbjct: 1 MAETLKEDSIMIREVWDYNLVEEFALIREIVDKFSYIAMDTEFPGVVLKPVATFKYNNDL 60
Query: 61 HYQTLKSNVDMLKLIQLGLTFSDENGNLPTCGTDKYCVWQFNFREFDVNEDIFANDSIEL 120
+Y+TLK NVD+LKLIQ+GLTFSDENGNLPTCGTDK+C+WQFNFREF++ EDI+A++SIEL
Sbjct: 61 NYRTLKENVDLLKLIQVGLTFSDENGNLPTCGTDKFCIWQFNFREFNIGEDIYASESIEL 120
Query: 121 LKQSGINFTKNNEIGIDAMRFGEFMMSSGIVLSDSMHWVTFHSGYDFGYLLKLLTCQNLP 180
L+Q GI+F KN E GID +RFGE MMSSGIVL+D++ WVTFH GYDFGYL+KLLTC+ LP
Sbjct: 121 LRQCGIDFKKNIEKGIDVVRFGELMMSSGIVLNDAISWVTFHGGYDFGYLVKLLTCKELP 180
Query: 181 DTQVEFFNLIRIYFPTVYDIKHLMKFCNSLHGGLNKLAELLEVERVGICHQAGSDSLLTA 240
Q +FF L+ +YFPTVYDIKHLM FCN L GGLN+LAEL+ VERVGICHQAGSDSLLT
Sbjct: 181 LKQADFFKLLYVYFPTVYDIKHLMTFCNGLFGGLNRLAELMGVERVGICHQAGSDSLLTL 240
Query: 241 STFRKLKENFFSSSLEKYAGVLYGLGVENGQNT 273
+FRKLKE +F S EKY GVLYGLGVE+G T
Sbjct: 241 GSFRKLKERYFPGSTEKYTGVLYGLGVEDGTTT 273
>sp|Q9S9P2|CAF1B_ARATH Probable CCR4-associated factor 1 homolog 2 OS=Arabidopsis thaliana
GN=CAF1-2 PE=2 SV=1
Length = 286
Score = 347 bits (889), Expect = 6e-95, Method: Compositional matrix adjust.
Identities = 167/264 (63%), Positives = 207/264 (78%), Gaps = 6/264 (2%)
Query: 8 DSIQIREVWSDNLELEFDLIRKIVDDYPYVAMDTEFPGIALRPVGS------FKSSYEYH 61
D+I+IREVW+ NLE E LI + +DD+PYVAMDTEFPGI + V + + YEY+
Sbjct: 12 DTIEIREVWNHNLEQEMALIEQSIDDFPYVAMDTEFPGIVCKTVTANPNPNPYSIHYEYN 71
Query: 62 YQTLKSNVDMLKLIQLGLTFSDENGNLPTCGTDKYCVWQFNFREFDVNEDIFANDSIELL 121
Y TLK+NV+MLKLIQLGLT SDE GNLPTCGT+K C+WQFNFREF+V D+FA DSIELL
Sbjct: 72 YDTLKANVNMLKLIQLGLTLSDEKGNLPTCGTNKQCIWQFNFREFNVISDMFALDSIELL 131
Query: 122 KQSGINFTKNNEIGIDAMRFGEFMMSSGIVLSDSMHWVTFHSGYDFGYLLKLLTCQNLPD 181
++S I+ KNNE G+DA RF E +M SG+VL+D +HWVTFH GYDFGYLLKLL+ + LP+
Sbjct: 132 RKSAIDLEKNNECGVDAKRFAELLMGSGVVLNDKIHWVTFHCGYDFGYLLKLLSGKELPE 191
Query: 182 TQVEFFNLIRIYFPTVYDIKHLMKFCNSLHGGLNKLAELLEVERVGICHQAGSDSLLTAS 241
+FF+ + +FP VYDIK+LM FC +L+GGL K+AELL V+RVGI HQAGSDSLLT
Sbjct: 192 EISDFFDQMEKFFPVVYDIKYLMGFCTNLYGGLEKIAELLGVKRVGISHQAGSDSLLTLR 251
Query: 242 TFRKLKENFFSSSLEKYAGVLYGL 265
TF K+KE FF+ SL KY+G L+GL
Sbjct: 252 TFIKMKEFFFTGSLLKYSGFLFGL 275
>sp|Q08BM8|CNOT7_DANRE CCR4-NOT transcription complex subunit 7 OS=Danio rerio GN=cnot7
PE=2 SV=1
Length = 286
Score = 293 bits (749), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 143/269 (53%), Positives = 194/269 (72%), Gaps = 12/269 (4%)
Query: 9 SIQIREVWSDNLELEFDLIRKIVDDYPYVAMDTEFPGIALRPVGSFKSSYEYHYQTLKSN 68
S +I EVW+ NLE E IR++ + Y+AMDTEFPG+ RP+G F+S+ +Y YQ L+ N
Sbjct: 9 SQRICEVWACNLEEEMKRIRQVTRKFNYIAMDTEFPGVVARPIGEFRSNADYQYQLLRCN 68
Query: 69 VDMLKLIQLGLTFSDENGNLPTCGTDKYCVWQFNFREFDVNEDIFANDSIELLKQSGINF 128
VD+LK+IQLGLTF +E G P GT WQFNF+ F++ ED++A DSIELL SGI F
Sbjct: 69 VDLLKIIQLGLTFMNEQGEYPP-GTS---TWQFNFK-FNLTEDMYAQDSIELLTSSGIQF 123
Query: 129 TKNNEIGIDAMRFGEFMMSSGIVLSDSMHWVTFHSGYDFGYLLKLLTCQNLPDTQVEFFN 188
K+ E GI+ M F E +M+SG+VL + + W++FHSGYDFGYL+K+L+ LPD +V+FF
Sbjct: 124 KKHEEEGIETMYFAELLMTSGVVLCEGVKWLSFHSGYDFGYLIKILSNSKLPDEEVDFFE 183
Query: 189 LIRIYFPTVYDIKHLMKFCNSLHGGLNKLAELLEVERVGICHQAGSDSLLTASTFRKLKE 248
++R++FP +YD+K+LMK C +L GGL ++AE LE+ER+G HQAGSDSLLT F K++E
Sbjct: 184 ILRLFFPIIYDVKYLMKSCKNLKGGLQEVAEQLELERIGPQHQAGSDSLLTGMAFFKMRE 243
Query: 249 NFFSSSLE--KYAGVLYGLG-----VENG 270
FF ++ KY G LYGLG V+NG
Sbjct: 244 MFFEDHIDDAKYCGHLYGLGSGSSYVQNG 272
>sp|Q60809|CNOT7_MOUSE CCR4-NOT transcription complex subunit 7 OS=Mus musculus GN=Cnot7
PE=1 SV=1
Length = 285
Score = 292 bits (748), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 143/269 (53%), Positives = 195/269 (72%), Gaps = 12/269 (4%)
Query: 9 SIQIREVWSDNLELEFDLIRKIVDDYPYVAMDTEFPGIALRPVGSFKSSYEYHYQTLKSN 68
S +I EVW+ NL+ E IR+++ Y YVAMDTEFPG+ RP+G F+S+ +Y YQ L+ N
Sbjct: 9 SQRICEVWACNLDEEMKKIRQVIRKYNYVAMDTEFPGVVARPIGEFRSNADYQYQLLRCN 68
Query: 69 VDMLKLIQLGLTFSDENGNLPTCGTDKYCVWQFNFREFDVNEDIFANDSIELLKQSGINF 128
VD+LK+IQLGLTF +E G P GT WQFNF+ F++ ED++A DSIELL SGI F
Sbjct: 69 VDLLKIIQLGLTFMNEQGEYPP-GTS---TWQFNFK-FNLTEDMYAQDSIELLTTSGIQF 123
Query: 129 TKNNEIGIDAMRFGEFMMSSGIVLSDSMHWVTFHSGYDFGYLLKLLTCQNLPDTQVEFFN 188
K+ E GI+ F E +M+SG+VL + + W++FHSGYDFGYL+K+LT NLP+ +++FF
Sbjct: 124 KKHEEEGIETQYFAELLMTSGVVLCEGVKWLSFHSGYDFGYLIKILTNSNLPEEELDFFE 183
Query: 189 LIRIYFPTVYDIKHLMKFCNSLHGGLNKLAELLEVERVGICHQAGSDSLLTASTFRKLKE 248
++R++FP +YD+K+LMK C +L GGL ++AE LE+ER+G HQAGSDSLLT F K++E
Sbjct: 184 ILRLFFPVIYDVKYLMKSCKNLKGGLQEVAEQLELERIGPQHQAGSDSLLTGMAFFKMRE 243
Query: 249 NFFSSSLE--KYAGVLYGLG-----VENG 270
FF ++ KY G LYGLG V+NG
Sbjct: 244 MFFEDHIDDAKYCGHLYGLGSGSSYVQNG 272
>sp|Q3ZC01|CNOT7_BOVIN CCR4-NOT transcription complex subunit 7 OS=Bos taurus GN=CNOT7
PE=2 SV=1
Length = 285
Score = 292 bits (748), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 143/269 (53%), Positives = 195/269 (72%), Gaps = 12/269 (4%)
Query: 9 SIQIREVWSDNLELEFDLIRKIVDDYPYVAMDTEFPGIALRPVGSFKSSYEYHYQTLKSN 68
S +I EVW+ NL+ E IR+++ Y YVAMDTEFPG+ RP+G F+S+ +Y YQ L+ N
Sbjct: 9 SQRICEVWACNLDEEMKKIRQVIRKYNYVAMDTEFPGVVARPIGEFRSNADYQYQLLRCN 68
Query: 69 VDMLKLIQLGLTFSDENGNLPTCGTDKYCVWQFNFREFDVNEDIFANDSIELLKQSGINF 128
VD+LK+IQLGLTF +E G P GT WQFNF+ F++ ED++A DSIELL SGI F
Sbjct: 69 VDLLKIIQLGLTFMNEQGEYPP-GTS---TWQFNFK-FNLTEDMYAQDSIELLTTSGIQF 123
Query: 129 TKNNEIGIDAMRFGEFMMSSGIVLSDSMHWVTFHSGYDFGYLLKLLTCQNLPDTQVEFFN 188
K+ E GI+ F E +M+SG+VL + + W++FHSGYDFGYL+K+LT NLP+ +++FF
Sbjct: 124 KKHEEEGIETQYFAELLMTSGVVLCEGVKWLSFHSGYDFGYLIKILTNSNLPEEELDFFE 183
Query: 189 LIRIYFPTVYDIKHLMKFCNSLHGGLNKLAELLEVERVGICHQAGSDSLLTASTFRKLKE 248
++R++FP +YD+K+LMK C +L GGL ++AE LE+ER+G HQAGSDSLLT F K++E
Sbjct: 184 ILRLFFPVIYDVKYLMKSCKNLKGGLQEVAEQLELERIGPQHQAGSDSLLTGMAFFKMRE 243
Query: 249 NFFSSSLE--KYAGVLYGLG-----VENG 270
FF ++ KY G LYGLG V+NG
Sbjct: 244 MFFEDHIDDAKYCGHLYGLGSGSSYVQNG 272
>sp|Q9UIV1|CNOT7_HUMAN CCR4-NOT transcription complex subunit 7 OS=Homo sapiens GN=CNOT7
PE=1 SV=3
Length = 285
Score = 292 bits (748), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 143/269 (53%), Positives = 195/269 (72%), Gaps = 12/269 (4%)
Query: 9 SIQIREVWSDNLELEFDLIRKIVDDYPYVAMDTEFPGIALRPVGSFKSSYEYHYQTLKSN 68
S +I EVW+ NL+ E IR+++ Y YVAMDTEFPG+ RP+G F+S+ +Y YQ L+ N
Sbjct: 9 SQRICEVWACNLDEEMKKIRQVIRKYNYVAMDTEFPGVVARPIGEFRSNADYQYQLLRCN 68
Query: 69 VDMLKLIQLGLTFSDENGNLPTCGTDKYCVWQFNFREFDVNEDIFANDSIELLKQSGINF 128
VD+LK+IQLGLTF +E G P GT WQFNF+ F++ ED++A DSIELL SGI F
Sbjct: 69 VDLLKIIQLGLTFMNEQGEYPP-GTS---TWQFNFK-FNLTEDMYAQDSIELLTTSGIQF 123
Query: 129 TKNNEIGIDAMRFGEFMMSSGIVLSDSMHWVTFHSGYDFGYLLKLLTCQNLPDTQVEFFN 188
K+ E GI+ F E +M+SG+VL + + W++FHSGYDFGYL+K+LT NLP+ +++FF
Sbjct: 124 KKHEEEGIETQYFAELLMTSGVVLCEGVKWLSFHSGYDFGYLIKILTNSNLPEEELDFFE 183
Query: 189 LIRIYFPTVYDIKHLMKFCNSLHGGLNKLAELLEVERVGICHQAGSDSLLTASTFRKLKE 248
++R++FP +YD+K+LMK C +L GGL ++AE LE+ER+G HQAGSDSLLT F K++E
Sbjct: 184 ILRLFFPVIYDVKYLMKSCKNLKGGLQEVAEQLELERIGPQHQAGSDSLLTGMAFFKMRE 243
Query: 249 NFFSSSLE--KYAGVLYGLG-----VENG 270
FF ++ KY G LYGLG V+NG
Sbjct: 244 MFFEDHIDDAKYCGHLYGLGSGSSYVQNG 272
>sp|Q5ZJV9|CNOT7_CHICK CCR4-NOT transcription complex subunit 7 OS=Gallus gallus GN=CNOT7
PE=2 SV=1
Length = 285
Score = 292 bits (748), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 143/269 (53%), Positives = 195/269 (72%), Gaps = 12/269 (4%)
Query: 9 SIQIREVWSDNLELEFDLIRKIVDDYPYVAMDTEFPGIALRPVGSFKSSYEYHYQTLKSN 68
S +I EVW+ NL+ E IR+++ Y YVAMDTEFPG+ RP+G F+S+ +Y YQ L+ N
Sbjct: 9 SQRICEVWACNLDEEMKKIRQVIRKYNYVAMDTEFPGVVARPIGEFRSNADYQYQLLRCN 68
Query: 69 VDMLKLIQLGLTFSDENGNLPTCGTDKYCVWQFNFREFDVNEDIFANDSIELLKQSGINF 128
VD+LK+IQLGLTF +E G P GT WQFNF+ F++ ED++A DSIELL SGI F
Sbjct: 69 VDLLKIIQLGLTFMNEQGEYPP-GTS---TWQFNFK-FNLTEDMYAQDSIELLTTSGIQF 123
Query: 129 TKNNEIGIDAMRFGEFMMSSGIVLSDSMHWVTFHSGYDFGYLLKLLTCQNLPDTQVEFFN 188
K+ E GI+ F E +M+SG+VL + + W++FHSGYDFGYL+K+LT NLP+ +++FF
Sbjct: 124 KKHEEEGIETQYFAELLMTSGVVLCEGVKWLSFHSGYDFGYLIKILTNSNLPEEELDFFE 183
Query: 189 LIRIYFPTVYDIKHLMKFCNSLHGGLNKLAELLEVERVGICHQAGSDSLLTASTFRKLKE 248
++R++FP +YD+K+LMK C +L GGL ++AE LE+ER+G HQAGSDSLLT F K++E
Sbjct: 184 ILRLFFPVIYDVKYLMKSCKNLKGGLQEVAEQLELERIGPQHQAGSDSLLTGMAFFKMRE 243
Query: 249 NFFSSSLE--KYAGVLYGLG-----VENG 270
FF ++ KY G LYGLG V+NG
Sbjct: 244 MFFEDHIDDAKYCGHLYGLGSGSSYVQNG 272
>sp|Q9D8X5|CNOT8_MOUSE CCR4-NOT transcription complex subunit 8 OS=Mus musculus GN=Cnot8
PE=2 SV=1
Length = 292
Score = 290 bits (743), Expect = 6e-78, Method: Compositional matrix adjust.
Identities = 138/265 (52%), Positives = 196/265 (73%), Gaps = 7/265 (2%)
Query: 12 IREVWSDNLELEFDLIRKIVDDYPYVAMDTEFPGIALRPVGSFKSSYEYHYQTLKSNVDM 71
I EVW+ NLE E IR+IV Y Y+AMDTEFPG+ +RP+G F+SS +Y YQ L+ NVD+
Sbjct: 12 ICEVWASNLEEEMRKIREIVLSYSYIAMDTEFPGVVVRPIGEFRSSIDYQYQLLRCNVDL 71
Query: 72 LKLIQLGLTFSDENGNLPTCGTDKYCVWQFNFREFDVNEDIFANDSIELLKQSGINFTKN 131
LK+IQLGLTF++E G P+ G + WQFNF+ F++ ED+++ DSI+LL SG+ F K+
Sbjct: 72 LKIIQLGLTFTNEKGEYPS-GIN---TWQFNFK-FNLTEDMYSQDSIDLLANSGLQFQKH 126
Query: 132 NEIGIDAMRFGEFMMSSGIVLSDSMHWVTFHSGYDFGYLLKLLTCQNLPDTQVEFFNLIR 191
E GID + F E +M+SG+VL D++ W++FHSGYDFGY++KLLT LP+ + EFF+++
Sbjct: 127 EEEGIDTLHFAELLMTSGVVLCDNVKWLSFHSGYDFGYMVKLLTDSRLPEEEHEFFHILN 186
Query: 192 IYFPTVYDIKHLMKFCNSLHGGLNKLAELLEVERVGICHQAGSDSLLTASTFRKLKENFF 251
++FP++YD+K+LMK C +L GGL ++A+ L+++R+G HQAGSDSLLT F ++KE FF
Sbjct: 187 LFFPSIYDVKYLMKSCKNLKGGLQEVADQLDLQRIGRQHQAGSDSLLTGMAFFRMKELFF 246
Query: 252 SSSLE--KYAGVLYGLGVENGQNTH 274
S++ KY G LYGLG Q +
Sbjct: 247 EDSIDDAKYCGRLYGLGTGVAQKQN 271
>sp|Q9UFF9|CNOT8_HUMAN CCR4-NOT transcription complex subunit 8 OS=Homo sapiens GN=CNOT8
PE=1 SV=1
Length = 292
Score = 290 bits (743), Expect = 6e-78, Method: Compositional matrix adjust.
Identities = 138/265 (52%), Positives = 196/265 (73%), Gaps = 7/265 (2%)
Query: 12 IREVWSDNLELEFDLIRKIVDDYPYVAMDTEFPGIALRPVGSFKSSYEYHYQTLKSNVDM 71
I EVW+ NLE E IR+IV Y Y+AMDTEFPG+ +RP+G F+SS +Y YQ L+ NVD+
Sbjct: 12 ICEVWASNLEEEMRKIREIVLSYSYIAMDTEFPGVVVRPIGEFRSSIDYQYQLLRCNVDL 71
Query: 72 LKLIQLGLTFSDENGNLPTCGTDKYCVWQFNFREFDVNEDIFANDSIELLKQSGINFTKN 131
LK+IQLGLTF++E G P+ G + WQFNF+ F++ ED+++ DSI+LL SG+ F K+
Sbjct: 72 LKIIQLGLTFTNEKGEYPS-GIN---TWQFNFK-FNLTEDMYSQDSIDLLANSGLQFQKH 126
Query: 132 NEIGIDAMRFGEFMMSSGIVLSDSMHWVTFHSGYDFGYLLKLLTCQNLPDTQVEFFNLIR 191
E GID + F E +M+SG+VL D++ W++FHSGYDFGY++KLLT LP+ + EFF+++
Sbjct: 127 EEEGIDTLHFAELLMTSGVVLCDNVKWLSFHSGYDFGYMVKLLTDSRLPEEEHEFFHILN 186
Query: 192 IYFPTVYDIKHLMKFCNSLHGGLNKLAELLEVERVGICHQAGSDSLLTASTFRKLKENFF 251
++FP++YD+K+LMK C +L GGL ++A+ L+++R+G HQAGSDSLLT F ++KE FF
Sbjct: 187 LFFPSIYDVKYLMKSCKNLKGGLQEVADQLDLQRIGRQHQAGSDSLLTGMAFFRMKELFF 246
Query: 252 SSSLE--KYAGVLYGLGVENGQNTH 274
S++ KY G LYGLG Q +
Sbjct: 247 EDSIDDAKYCGRLYGLGTGVAQKQN 271
>sp|Q3KQ85|CNOT7_XENLA CCR4-NOT transcription complex subunit 7 OS=Xenopus laevis GN=cnot7
PE=2 SV=1
Length = 285
Score = 289 bits (740), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 142/269 (52%), Positives = 193/269 (71%), Gaps = 12/269 (4%)
Query: 9 SIQIREVWSDNLELEFDLIRKIVDDYPYVAMDTEFPGIALRPVGSFKSSYEYHYQTLKSN 68
S +I EVW+ NL+ + IR+++ Y YVAMDTEFPG+ RP+G F+S+ +Y YQ L+ N
Sbjct: 9 SQRICEVWACNLDDQMKRIRQVIRKYNYVAMDTEFPGVVARPIGEFRSNADYQYQLLRCN 68
Query: 69 VDMLKLIQLGLTFSDENGNLPTCGTDKYCVWQFNFREFDVNEDIFANDSIELLKQSGINF 128
VD+LK+IQLGLTF +E G P GT WQFNF+ F++ ED++A DSIELL SGI F
Sbjct: 69 VDLLKIIQLGLTFMNEQGEYPP-GTS---TWQFNFK-FNLTEDMYAQDSIELLTSSGIQF 123
Query: 129 TKNNEIGIDAMRFGEFMMSSGIVLSDSMHWVTFHSGYDFGYLLKLLTCQNLPDTQVEFFN 188
K+ E GI+ F E M+SG+VL + + W++FHSGYDFGYL+K+LT NLP+ + +FF
Sbjct: 124 KKHEEEGIETQYFAELFMTSGVVLCEGVKWLSFHSGYDFGYLIKILTNSNLPEVEQDFFE 183
Query: 189 LIRIYFPTVYDIKHLMKFCNSLHGGLNKLAELLEVERVGICHQAGSDSLLTASTFRKLKE 248
++R++FP +YD+K+LMK C +L GGL ++AE LE+ER+G HQAGSDSLLT F K++E
Sbjct: 184 ILRLFFPVIYDVKYLMKSCKNLKGGLQEVAEQLELERIGPQHQAGSDSLLTGMAFFKMRE 243
Query: 249 NFFSSSLE--KYAGVLYGLG-----VENG 270
FF ++ KY G LYGLG V+NG
Sbjct: 244 MFFEDHIDDAKYCGHLYGLGSGSSYVQNG 272
>sp|A4II96|CNOT7_XENTR CCR4-NOT transcription complex subunit 7 OS=Xenopus tropicalis
GN=cnot7 PE=2 SV=1
Length = 285
Score = 289 bits (739), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 141/269 (52%), Positives = 194/269 (72%), Gaps = 12/269 (4%)
Query: 9 SIQIREVWSDNLELEFDLIRKIVDDYPYVAMDTEFPGIALRPVGSFKSSYEYHYQTLKSN 68
S +I EVW+ NL+ + IR+++ Y YVAMDTEFPG+ RP+G F+S+ +Y YQ L+ N
Sbjct: 9 SQRICEVWACNLDDQMKRIRQVIRKYNYVAMDTEFPGVVARPIGEFRSNADYQYQLLRCN 68
Query: 69 VDMLKLIQLGLTFSDENGNLPTCGTDKYCVWQFNFREFDVNEDIFANDSIELLKQSGINF 128
VD+LK+IQLGLTF +E G P GT WQFNF+ F++ ED++A DSIELL SGI F
Sbjct: 69 VDLLKIIQLGLTFVNEQGEYPP-GTS---TWQFNFK-FNLTEDMYAQDSIELLTSSGIQF 123
Query: 129 TKNNEIGIDAMRFGEFMMSSGIVLSDSMHWVTFHSGYDFGYLLKLLTCQNLPDTQVEFFN 188
K+ E GI+ F E M+SG+VL + + W++FHSGYDFGYL+K+LT NLP+ +++FF
Sbjct: 124 KKHEEEGIETQYFAELFMTSGVVLCEGVKWLSFHSGYDFGYLIKILTNSNLPEVELDFFE 183
Query: 189 LIRIYFPTVYDIKHLMKFCNSLHGGLNKLAELLEVERVGICHQAGSDSLLTASTFRKLKE 248
++R++FP +YD+K+LMK C +L GGL ++AE LE++R+G HQAGSDSLLT F K++E
Sbjct: 184 ILRLFFPVIYDVKYLMKSCKNLKGGLQEVAEQLELKRIGPQHQAGSDSLLTGMAFFKMRE 243
Query: 249 NFFSSSLE--KYAGVLYGLG-----VENG 270
FF ++ KY G LYGLG V+NG
Sbjct: 244 MFFEDHIDDAKYCGHLYGLGSGSSYVQNG 272
>sp|Q9FMS6|CAF1K_ARATH Probable CCR4-associated factor 1 homolog 11 OS=Arabidopsis
thaliana GN=CAF1-11 PE=2 SV=1
Length = 278
Score = 280 bits (716), Expect = 9e-75, Method: Compositional matrix adjust.
Identities = 143/268 (53%), Positives = 191/268 (71%), Gaps = 8/268 (2%)
Query: 8 DSIQIREVWSDNLELEFDLIRKIVDDYPYVAMDTEFPGIALRPVGSF--KSSYEYHYQTL 65
D I IR+VW+ NLE EFDLIR IV+DYP+++MDTEFPG+ + + + Y Y L
Sbjct: 10 DVIVIRDVWAYNLESEFDLIRGIVEDYPFISMDTEFPGVIYKADLDVLRRGNPNYLYNLL 69
Query: 66 KSNVDMLKLIQLGLTFSDENGNLPTCG--TDKYCVWQFNFREFDVNEDIFANDSIELLKQ 123
KSNVD L LIQ+GLT SD +GNLP G ++ +W+FNFR+FDV D A DSIELL++
Sbjct: 70 KSNVDALSLIQVGLTLSDADGNLPDLGGQKNRRYIWEFNFRDFDVERDPHAPDSIELLRR 129
Query: 124 SGINFTKNNEIGIDAMRFGEFMMSSGIVLSDSMHWVTFHSGYDFGYLLKLLTCQNLPDTQ 183
GI+F +N G+++ RF E MMSSG++ ++S+ WVTFHS YDFGYL+K+LT + LP
Sbjct: 130 HGIDFERNRREGVESERFAELMMSSGLICNESVSWVTFHSAYDFGYLVKILTRRQLPVAL 189
Query: 184 VEFFNLIRIYF-PTVYDIKHLMKFC-NSLHGGLNKLAELLEVER-VGICHQAGSDSLLTA 240
EF L+R +F VYD+KH+M+FC L+GGL+++A LEV R VG CHQAGSDSLLT
Sbjct: 190 REFLGLLRAFFGDRVYDVKHIMRFCEQRLYGGLDRVARSLEVNRAVGKCHQAGSDSLLTW 249
Query: 241 STFRKLKENFF-SSSLEKYAGVLYGLGV 267
F+++++ +F EK+AGVLYGL V
Sbjct: 250 QAFQRMRDLYFVEDGAEKHAGVLYGLEV 277
>sp|Q9LXM2|CAF1I_ARATH Probable CCR4-associated factor 1 homolog 9 OS=Arabidopsis thaliana
GN=CAF1-9 PE=2 SV=1
Length = 280
Score = 279 bits (713), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 143/271 (52%), Positives = 192/271 (70%), Gaps = 7/271 (2%)
Query: 3 LLPKGDSIQIREVWSDNLELEFDLIRKIVDDYPYVAMDTEFPGIALRPVGSFKSSYEYHY 62
L P G ++ REVW++NLE EF+LI +I+DDYP+++MDTEFPG+ + F + + Y
Sbjct: 10 LKPDGVTVVTREVWAENLESEFELISEIIDDYPFISMDTEFPGVIFKSDLRFTNPDDL-Y 68
Query: 63 QTLKSNVDMLKLIQLGLTFSDENGNLPTCGTD--KYCVWQFNFREFDVNEDIFANDSIEL 120
LK+NVD L LIQ+GLT SD NGNLP G D + +W+FNFR+FDV D A DSIEL
Sbjct: 69 TLLKANVDALSLIQVGLTLSDVNGNLPDLGDDLHRGFIWEFNFRDFDVARDAHAPDSIEL 128
Query: 121 LKQSGINFTKNNEIGIDAMRFGEFMMSSGIVLSDSMHWVTFHSGYDFGYLLKLLTCQNLP 180
L++ GI+F +N G+++ RF E MMSSG+V ++ + WVTFHS YDFGYL+K+LT + LP
Sbjct: 129 LRRQGIDFERNCRDGVESERFAELMMSSGLVCNEEVSWVTFHSAYDFGYLMKILTRRELP 188
Query: 181 DTQVEFFNLIRIYF-PTVYDIKHLMKFC-NSLHGGLNKLAELLEVER-VGICHQAGSDSL 237
EF ++R+ F VYD+KH+MKFC L GGL+++A LEV R VG CHQAGSDSL
Sbjct: 189 GALGEFKRVMRVLFGERVYDVKHMMKFCERRLFGGLDRVARTLEVNRAVGKCHQAGSDSL 248
Query: 238 LTASTFRKLKENFF-SSSLEKYAGVLYGLGV 267
LT F+++++ +F EK+AGVLYGL V
Sbjct: 249 LTWHAFQRMRDLYFVQDGPEKHAGVLYGLEV 279
>sp|O74856|CAF1_SCHPO Poly(A) ribonuclease pop2 OS=Schizosaccharomyces pombe (strain 972
/ ATCC 24843) GN=caf1 PE=1 SV=2
Length = 335
Score = 266 bits (681), Expect = 8e-71, Method: Compositional matrix adjust.
Identities = 128/256 (50%), Positives = 180/256 (70%), Gaps = 6/256 (2%)
Query: 12 IREVWSDNLELEFDLIRKIVDDYPYVAMDTEFPGIALRPVGSFKSSYEYHYQTLKSNVDM 71
IR+VWS NL+ E +LI +++ YP V+MDTEFPG+ RP+G FKSS +YHYQTL++NVD
Sbjct: 25 IRDVWSTNLQQEMNLIMSLIERYPVVSMDTEFPGVVARPLGVFKSSDDYHYQTLRANVDS 84
Query: 72 LKLIQLGLTFSDENGNLPTCGTDKYCVWQFNFREFDVNEDIFANDSIELLKQSGINFTKN 131
LK+IQ+GL SDE GN P + C WQFNF F++ +D++A +SIELL +SGI+F K+
Sbjct: 85 LKIIQIGLALSDEEGNAPV----EACTWQFNF-TFNLQDDMYAPESIELLTKSGIDFKKH 139
Query: 132 NEIGIDAMRFGEFMMSSGIVLSDSMHWVTFHSGYDFGYLLKLLTCQNLPDTQVEFFNLIR 191
E+GI+ F E ++ SG+VL + + W+TFHSGYDF YLLK +T LP EF+ ++
Sbjct: 140 QEVGIEPADFAELLIGSGLVLQEEVTWITFHSGYDFAYLLKAMTQIPLPAEYEEFYKILC 199
Query: 192 IYFPTVYDIKHLMKFCNSLHGGLNKLAELLEVERVGICHQAGSDSLLTASTFRKLKENFF 251
IYFP YDIK++MK + GL +A+ L++ R+G HQAGSD+LLTA F +++ +F
Sbjct: 200 IYFPKNYDIKYIMKSVLNNSKGLQDIADDLQIHRIGPQHQAGSDALLTARIFFEIRSRYF 259
Query: 252 SSSLE-KYAGVLYGLG 266
S++ + LYGLG
Sbjct: 260 DGSIDSRMLNQLYGLG 275
>sp|Q17345|CNOT7_CAEEL CCR4-NOT transcription complex subunit 7 OS=Caenorhabditis elegans
GN=ccf-1 PE=2 SV=1
Length = 310
Score = 237 bits (604), Expect = 7e-62, Method: Compositional matrix adjust.
Identities = 122/265 (46%), Positives = 175/265 (66%), Gaps = 13/265 (4%)
Query: 10 IQIREVWSDNLELEFDLIRKIVDDYPYVAMDTEFPGIALRPVGSFKSSYEYHYQTLKSNV 69
++I V+ N+E EF IR V+DYPYVAMDTEFPG+ P+G+F+S +++YQ + NV
Sbjct: 21 VKIHNVYMSNVEEEFARIRGFVEDYPYVAMDTEFPGVVATPLGTFRSKEDFNYQQVFCNV 80
Query: 70 DMLKLIQLGLTFSDENGNLPTCGTDKYCVWQFNFREFDVNEDIFANDSIELLKQSGINFT 129
+MLKLIQ+G ++ G LP G VWQFNF F ED+F+++S+E+L+Q+GI+FT
Sbjct: 81 NMLKLIQVGFAMVNDKGELPPTGD----VWQFNFN-FSFAEDMFSHESVEMLRQAGIDFT 135
Query: 130 KNNEIGIDAMRFGEFMMSSGIVLSDSMHWVTFHSGYDFGYLLKLLTCQNLPDTQVEFFNL 189
GI FGE + +SG++ + W+TF SGYDFGYLLK +T +LP + FF
Sbjct: 136 LLQNNGIPTAVFGELLTTSGLITDPRITWLTFSSGYDFGYLLKSITLGDLPKEESTFFMC 195
Query: 190 IRIYFPTVYDIKHLMKFCN----SLHGGLNKLAELLEVERVGICHQAGSDSLLTASTFRK 245
+ FPT +DIK L++ N L GGL ++A+ L+V+R G+ HQAGSD+LLTA+TF K
Sbjct: 196 HKTLFPTSFDIKILLRTPNCASAKLKGGLQEVADQLDVKRQGVRHQAGSDALLTAATFFK 255
Query: 246 LKENFFSSSLEKYA----GVLYGLG 266
+K+ FF + + A G ++GLG
Sbjct: 256 IKKQFFGDNWNQIAPLICGHMFGLG 280
>sp|P39008|POP2_YEAST Poly(A) ribonuclease POP2 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=POP2 PE=1 SV=2
Length = 433
Score = 201 bits (511), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 107/282 (37%), Positives = 161/282 (57%), Gaps = 24/282 (8%)
Query: 4 LPKGDSIQIREVWSDNLELEFDLIRKIVDDYPYVAMDTEFPGIALRPVGSFKSSYEYHYQ 63
LP + + +R+VW NL EF +IR++V Y +V++ TEF G RP+G+F+S +YHYQ
Sbjct: 152 LPPPNYLFVRDVWKSNLYSEFAVIRQLVSQYNHVSISTEFVGTLARPIGTFRSKVDYHYQ 211
Query: 64 TLKSNVDMLKLIQLGLTFSDENGNLPTCGTDKYCVWQFNFREFDVNEDIFANDSIELLKQ 123
T+++NVD L IQLGL+ SD NGN P G WQFNF EFD ++I + +S+ELL++
Sbjct: 212 TMRANVDFLNPIQLGLSLSDANGNKPDNGP---STWQFNF-EFDPKKEIMSTESLELLRK 267
Query: 124 SGINFTKNNEIGIDAMRFGEFMMSSGIVLSDSMHWVTFHSGYDFGYLLKLLTCQNLPDTQ 183
SGINF K+ +GID F + +M SG+++ DS+ W+T+H+ YD G+L+ +L ++P+ +
Sbjct: 268 SGINFEKHENLGIDVFEFSQLLMDSGLMMDDSVTWITYHAAYDLGFLINILMNDSMPNNK 327
Query: 184 VEFFNLIRIYFPTVYDIKHLMKFCNSLHG---------------GLNKLAELLEVERVGI 228
+F + Y P YD+ + K L LA+ L + R I
Sbjct: 328 EDFEWWVHQYMPNFYDLNLVYKIIQEFKNPQLQQSSQQQQQQQYSLTTLADELGLPRFSI 387
Query: 229 CHQAGSDSLLTASTF---RKLKENFFS--SSLEKYAGVLYGL 265
G SLL +F KL + F + KY GV+YG+
Sbjct: 388 FTTTGGQSLLMLLSFCQLSKLSMHKFPNGTDFAKYQGVIYGI 429
>sp|Q9SHJ0|CAF1A_ARATH Probable CCR4-associated factor 1 homolog 1 OS=Arabidopsis thaliana
GN=CAF1-1 PE=2 SV=1
Length = 360
Score = 158 bits (399), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 97/260 (37%), Positives = 136/260 (52%), Gaps = 14/260 (5%)
Query: 13 REVWSDNLELEFDLIRKIVDDYPYVAMDTEFPGIALRPVGSFKSSYEYHYQTLKSNVDML 72
R VW N++ E + + + +P +A DTE+PGI R F SS + Y+ +K NV+
Sbjct: 10 RRVWRSNVDEEMARMAECLKRFPLIAFDTEYPGIIFRTY--FDSSSDECYRAMKGNVENT 67
Query: 73 KLIQLGLTFSDENGNLPTCGTDKYCVWQFNFREFDVNEDIFANDSIELLKQSGINFTKNN 132
KLIQ G T + G + VW+ NF F D SIE L++ G++ K
Sbjct: 68 KLIQCGFTLFNAKGEIGG-------VWEINFSNFGDPSDTRNELSIEFLRRHGLDLQKIR 120
Query: 133 EIGIDAMRFGEFMMSSGIVLSDS-MHWVTFHSGYDFGYLLKLLTCQNLPDTQVEFFNLIR 191
+ G+D +G F + S + +VTF YDF Y L +L LP+T EF +
Sbjct: 121 DEGVDMFGYGFFPKLMTVFRSQKHVEFVTFQGAYDFAYFLSILNHGKLPETHGEFATEVV 180
Query: 192 IYFPTVYDIKHLMKFCNSL--HGGLNKLAELLEVERVGICHQAGSDSLLTASTFRKLKEN 249
F VYD K + FC L H GL+KLA+LL++ RVG H AGSDSL+TA F KLK
Sbjct: 181 KVFGQVYDTKVMAGFCEGLGEHLGLSKLAQLLQITRVGRAHHAGSDSLMTALVFIKLKHV 240
Query: 250 FFSSSLEKYAGVLYGLGVEN 269
+ S + G++YG+G N
Sbjct: 241 YEDSRFAR--GLIYGIGKSN 258
>sp|O64773|CAF1E_ARATH Probable CCR4-associated factor 1 homolog 5 OS=Arabidopsis thaliana
GN=CAF1-5 PE=2 SV=1
Length = 278
Score = 131 bits (330), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 91/249 (36%), Positives = 128/249 (51%), Gaps = 20/249 (8%)
Query: 14 EVWSDNLELEFDLIRKIVDDYPYVAMDTEFPGIALRPVGSFKSSYEYHYQTLKSNVDMLK 73
EVW N + E + IR + +A+DTEFPG L+ +S E Y+ +K NVD
Sbjct: 4 EVWRWNKQAEMNSIRDCLKHCNSIAIDTEFPG-CLKET-PMDASDEIRYRDMKFNVDNTH 61
Query: 74 LIQLGLTFSDENGNLPTCGTDKYCVWQFNFREFDVNEDIFANDSIELLKQSGINFTKNNE 133
LIQLGLT G W+ N +F+ ++ + + SI LK +G++ K E
Sbjct: 62 LIQLGLTL---------FGKGITKTWEINLSDFNESKSLKNDKSIAFLKNNGLDLDKIRE 112
Query: 134 IGIDAMRFGEFMMSSGIVLSDS---MHWVTFHSGYDFGYLLKLLTCQNLPDTQVEFFNLI 190
GI EF M +L++ M WVTF YD YLLK LT + LP+T EF +
Sbjct: 113 EGIG---IEEFFMEFSQILNEKHGKMRWVTFQGSYDKAYLLKGLTRKPLPETSKEFDETV 169
Query: 191 RIYFPT-VYDIKHLMKFCNSLHG--GLNKLAELLEVERVGICHQAGSDSLLTASTFRKLK 247
+ VYD+K + C+ L GL ++A++L++ RVG H AGSDS LTA F KL
Sbjct: 170 QQLLGRFVYDVKKMAGLCSGLSSRFGLQRIADVLQMRRVGKAHHAGSDSELTARVFTKLI 229
Query: 248 ENFFSSSLE 256
+ +S E
Sbjct: 230 FDLVNSRKE 238
>sp|Q9SFX6|CAF1C_ARATH Putative CCR4-associated factor 1 homolog 3 OS=Arabidopsis thaliana
GN=CAF1-3 PE=1 SV=1
Length = 310
Score = 128 bits (321), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 94/250 (37%), Positives = 133/250 (53%), Gaps = 26/250 (10%)
Query: 14 EVWSDNLELEFDLIRKIVDDYPYVAMDTEFPGIALRPVGSFKSSYEYHYQTLKSNVDMLK 73
EVW N E+E + IR + +A+DTEFPG L+ +S E Y+ +K NVD
Sbjct: 8 EVWRWNKEVEMNSIRDCLKHCSSIAIDTEFPG-CLKET-PMDASEEIRYRDMKFNVDNTH 65
Query: 74 LIQLGLTFSDENGNLPTCGTDKYCVWQFNFREFDVNEDIFAND-SIELLKQSGINFTKNN 132
LIQLG T D G T W+ N +FD ++ F ND SI LK +G+N K
Sbjct: 66 LIQLGFTLFDRRGFAKT--------WEINLSDFDEHK-CFKNDKSIAFLKSNGLNLDKIR 116
Query: 133 E--IGIDAMRFGEFMMSSGIVLSDS---MHWVTFHSGYDFGYLLKLLTC-QNLPDTQVEF 186
E IGID EF +L++ + WV F YD YL+K LT + LP+T+ EF
Sbjct: 117 EEGIGID-----EFFRDFSQILTEKDGKITWVNFQGSYDNAYLVKGLTGGKPLPETKEEF 171
Query: 187 FNLIRIYFPT-VYDIKHLMKFCNSLHG--GLNKLAELLEVERVGICHQAGSDSLLTASTF 243
++ V+D+K + + C+ L GL ++A++L+++RVG H AGSDS LTA F
Sbjct: 172 HETVQQLLGKFVFDVKKIAESCSGLSSQFGLQRIADVLQMKRVGKAHHAGSDSELTARVF 231
Query: 244 RKLKENFFSS 253
KL + +S
Sbjct: 232 TKLTFDLLNS 241
>sp|Q9C6M9|CAF1D_ARATH Putative CCR4-associated factor 1 homolog 4 OS=Arabidopsis thaliana
GN=CAF1-4 PE=1 SV=1
Length = 302
Score = 122 bits (305), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 93/247 (37%), Positives = 132/247 (53%), Gaps = 20/247 (8%)
Query: 14 EVWSDNLELEFDLIRKIVDDYPYVAMDTEFPGIALRPVGSFKSSYEYHYQTLKSNVDMLK 73
EVW N E+E D IR + + +A+DTEFPG L+ +S E Y+ +K NVD
Sbjct: 3 EVWRWNKEVEMDSIRDCLKHFSSIAIDTEFPG-CLKET-PMDASEEIRYRDMKFNVDNTH 60
Query: 74 LIQLGLTFSDENGNLPTCGTDKYCVWQFNFREFDVNEDIFAND-SIELLKQSGINFTKNN 132
LIQLG T D G T W+ N +F+ ++ F ND SI LK +G+N K
Sbjct: 61 LIQLGFTLFDRRGITKT--------WEINLSDFNEHK-CFKNDKSIAFLKSNGLNLDKIG 111
Query: 133 EIGIDAMRFGEFMMSSGIVLSD--SMHWVTFHSGYDFGYLLKLLTC-QNLPDTQVEFFNL 189
E GI F F S I+ + WV F YD YL+K LT + LP+T+ EF
Sbjct: 112 EEGIGIEEF--FRDFSQILKEKDGKITWVNFQGSYDNAYLVKGLTGGKPLPETKEEFHET 169
Query: 190 I-RIYFPTVYDIKHLMKFCNSLHG--GLNKLAELLEVERVGICHQAGSDSLLTASTFRKL 246
+ ++ V+D+K + + C+ L GL ++A++L+++RVG H AGSDS LTA F KL
Sbjct: 170 VEQLLGKFVFDVKKIAESCSGLSSRFGLQRIADVLQMKRVGKAHHAGSDSELTARVFTKL 229
Query: 247 KENFFSS 253
+ +S
Sbjct: 230 TFDLLNS 236
>sp|Q9LXM4|CAF1H_ARATH Putative CCR4-associated factor 1 homolog 8 OS=Arabidopsis thaliana
GN=CAF1-8 PE=3 SV=1
Length = 239
Score = 118 bits (295), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 84/227 (37%), Positives = 112/227 (49%), Gaps = 12/227 (5%)
Query: 26 LIRKIVDDYPYVAMDTEFPGIALRPVGSFKSSYEYHYQTLKSNVDMLKLIQLGLTFSDEN 85
LI + Y ++A+DTEFP LR ++ E Y + +VD KLIQLGLT D N
Sbjct: 3 LIEDCLRSYRFIAIDTEFPS-TLRETTQ-HATDEERYMDMSFSVDRAKLIQLGLTLFDIN 60
Query: 86 GNLPTCGTDKYCVWQFNFREFDVNEDIFANDSIELLKQSGINFTKNNEIGIDAMRFGEFM 145
G + GT W+ NF +F V+ D SIE L+++G++ K E GI F M
Sbjct: 61 GRIG--GT-----WEINFSDFGVD-DARNEKSIEFLRRNGLDLRKIREEGIRIEGFFSEM 112
Query: 146 MSSGIVLSDSMHWVTFHSGYDFGYLLKLLTCQNLPDTQVEFFNLIRIYFPTVYDIKHLMK 205
++ WVTFH YD YLLK T + LP T F + +VYD+K +
Sbjct: 113 FWMLKKTRRNITWVTFHGSYDIAYLLKGFTGEALPVTSERFSKAVARVLGSVYDLKVMAG 172
Query: 206 FCNSLHG--GLNKLAELLEVERVGICHQAGSDSLLTASTFRKLKENF 250
C L GL LA + RVG H AGS++ LTA F K+ F
Sbjct: 173 RCEGLSSRLGLETLAHEFGLNRVGTAHHAGSNNELTAMVFAKVLSPF 219
>sp|Q8H0U4|TNPO1_ARATH Transportin-1 OS=Arabidopsis thaliana GN=TRN1 PE=1 SV=1
Length = 891
Score = 35.8 bits (81), Expect = 0.36, Method: Composition-based stats.
Identities = 18/57 (31%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
Query: 18 DNLELEFDLIRKIVDDYPYVAMDTEFPGIALRPVGSFKSSYEYHYQTLKSNVDMLKL 74
++++ D + KI +D P+V +DTE PG+A RP+ F +Q+ +++ L L
Sbjct: 147 NHMDGAMDALSKICEDIPHV-LDTEVPGLAERPINIFLPRLLQFFQSPHASLRKLAL 202
>sp|O14920|IKKB_HUMAN Inhibitor of nuclear factor kappa-B kinase subunit beta OS=Homo
sapiens GN=IKBKB PE=1 SV=1
Length = 756
Score = 35.4 bits (80), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 41/84 (48%), Gaps = 6/84 (7%)
Query: 180 PDTQVEFFNLIRIYFPTVYDIKHLMKFCNSLHGGLNKLAELLEVERVGICHQAGSDSLLT 239
P + FF L +++ + I+ L + CN L G + A ++ + R C +S+ +
Sbjct: 417 PKRNLAFFQLRKVWGQVWHSIQTLKEDCNRLQQG--QRAAMMNLLRNNSCLSKMKNSMAS 474
Query: 240 ASTFRKLKENFFSSS----LEKYA 259
S K K +FF +S LEKY+
Sbjct: 475 MSQQLKAKLDFFKTSIQIDLEKYS 498
>sp|P81333|YC9A_METJA Uncharacterized protein MJ1292.1 OS=Methanocaldococcus jannaschii
(strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC
100440) GN=MJ1292.1 PE=4 SV=1
Length = 237
Score = 35.0 bits (79), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 38/138 (27%), Positives = 59/138 (42%), Gaps = 20/138 (14%)
Query: 64 TLKSNVDMLKLIQLGLTFSDENGNLPTCGTDKYCVWQFNFREFDVNEDIFANDSIELLKQ 123
+LKS V LK I++ + DENG L C K N+R+ VN +I NDS+E
Sbjct: 57 SLKSAVPDLKDIEIWASAMDENGRLINCSKKKTIDIYGNYRK--VNLEILFNDSLE---G 111
Query: 124 SGINFTKNNEIGIDAMRFGEFMMSSGIVL------SDSMHWVTFHSGYD--------FGY 169
I + K E + + + M++ +V SD +T Y G
Sbjct: 112 YLIIYAKTGE-AVIPLYYKPIMVTYPVVFGLEYNPSDPWANLTLSHNYQVPIKVNATIGK 170
Query: 170 LLKLLTCQNLPDTQVEFF 187
K++T +T+V F+
Sbjct: 171 YSKIITIYPYKETKVPFY 188
>sp|Q9D2E2|TOE1_MOUSE Target of EGR1 protein 1 OS=Mus musculus GN=Toe1 PE=2 SV=1
Length = 511
Score = 34.7 bits (78), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 26/101 (25%), Positives = 40/101 (39%), Gaps = 4/101 (3%)
Query: 36 YVAMDTEFPGIALRPVGSFKSSYEYHYQTLKSNVDMLKLIQLGLTFSDENGNLPTCGTDK 95
+VA+DTE G+ R E Y+ + ++ LGL + P G +
Sbjct: 60 FVAVDTELSGLGDR-KSLLNQCIEERYKAVCHAARTRSVLSLGLACFRQQ---PDKGENS 115
Query: 96 YCVWQFNFREFDVNEDIFANDSIELLKQSGINFTKNNEIGI 136
Y FN + E + S++ L Q G NF + GI
Sbjct: 116 YLAQVFNLTLLCIEEYVIEPKSVQFLVQHGFNFNRQYAQGI 156
>sp|O88351|IKKB_MOUSE Inhibitor of nuclear factor kappa-B kinase subunit beta OS=Mus
musculus GN=Ikbkb PE=1 SV=1
Length = 757
Score = 33.9 bits (76), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 40/83 (48%), Gaps = 6/83 (7%)
Query: 180 PDTQVEFFNLIRIYFPTVYDIKHLMKFCNSLHGGLNKLAELLEVERVGICHQAGSDSLLT 239
P + FF L +++ + I+ L + CN L G + A ++ + R C +++ +
Sbjct: 417 PKRNLSFFQLRKVWGQVWHSIQTLKEDCNRLQQG--QRAAMMSLLRNNSCLSKMKNAMAS 474
Query: 240 ASTFRKLKENFFSSS----LEKY 258
+ K K +FF +S LEKY
Sbjct: 475 TAQQLKAKLDFFKTSIQIDLEKY 497
>sp|Q9SB48|NCPR1_ARATH NADPH--cytochrome P450 reductase 1 OS=Arabidopsis thaliana GN=ATR1
PE=1 SV=1
Length = 692
Score = 33.1 bits (74), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 36/171 (21%), Positives = 70/171 (40%), Gaps = 25/171 (14%)
Query: 15 VWSDNLELEFDLIRKIVDD----YPYVAMDTEFPGIALRPVGSFKSSYEYHYQTLKSNVD 70
W ++L E D + K DD PY A+ E+ + P + + S E + + +D
Sbjct: 229 AWKESLWSELDKLLKDEDDKSVATPYTAVIPEYRVVTHDPRFTTQKSMESNVANGNTTID 288
Query: 71 MLKLIQLGLTFSDENGNLPTCGTDKYCVWQFNFREFDVNEDIFANDSIELLKQSGINFTK 130
+ ++ + E L T +D+ C+ EFD++ ++GI +
Sbjct: 289 IHHPCRVDVAVQKE---LHTHESDRSCI----HLEFDIS-------------RTGITYET 328
Query: 131 NNEIGIDAMRFGEFMMSSGIVLSDSMHWV-TFHSGYDFGYLLKLLTCQNLP 180
+ +G+ A E + +G +L S+ V + H+ + G L+ P
Sbjct: 329 GDHVGVYAENHVEIVEEAGKLLGHSLDLVFSIHADKEDGSPLESAVPPPFP 379
>sp|Q17QN2|TOE1_BOVIN Target of EGR1 protein 1 OS=Bos taurus GN=TOE1 PE=2 SV=1
Length = 524
Score = 32.7 bits (73), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 29/120 (24%), Positives = 46/120 (38%), Gaps = 4/120 (3%)
Query: 17 SDNLELEFDLIRKIVDDYPYVAMDTEFPGIALRPVGSFKSSYEYHYQTLKSNVDMLKLIQ 76
SDN + + + + +VA+DTE G+ R E Y+ + ++
Sbjct: 41 SDNFKEMWPSLLLAIKTANFVAVDTELSGLGDRKC-LLNQCIEERYKAVCHAARTRSILS 99
Query: 77 LGLTFSDENGNLPTCGTDKYCVWQFNFREFDVNEDIFANDSIELLKQSGINFTKNNEIGI 136
LGL + P G Y FN + E + S++ L Q G NF + GI
Sbjct: 100 LGLACFKQQ---PDKGEHSYLAQVFNLTLLCMEEYVIEPKSVQFLVQHGFNFNRQYAQGI 156
>sp|Q5RAR6|TOE1_PONAB Target of EGR1 protein 1 OS=Pongo abelii GN=TOE1 PE=2 SV=1
Length = 510
Score = 32.0 bits (71), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 46/124 (37%), Gaps = 12/124 (9%)
Query: 13 REVWSDNLELEFDLIRKIVDDYPYVAMDTEFPGIALRPVGSFKSSYEYHYQTLKSNVDML 72
RE+W L L K + +VA+DTE G+ R E Y+ +
Sbjct: 45 REMWPSLL-----LAIKTAN---FVAVDTELSGLGDR-KSLLNQCSEERYKAVCHAARTR 95
Query: 73 KLIQLGLTFSDENGNLPTCGTDKYCVWQFNFREFDVNEDIFANDSIELLKQSGINFTKNN 132
++ LGL P G Y FN + E + S++ L Q G NF +
Sbjct: 96 SILSLGLACFKRQ---PDKGEHSYLAQVFNLTLLCMEEYVIEPKSVQFLIQHGFNFNQQY 152
Query: 133 EIGI 136
GI
Sbjct: 153 AQGI 156
>sp|O94386|YGS9_SCHPO Uncharacterized protein C29A10.09c OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPBC29A10.09c PE=3 SV=1
Length = 427
Score = 31.6 bits (70), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 51/112 (45%), Gaps = 2/112 (1%)
Query: 27 IRKIVDDYPYVAMDTEFPGIALRPVGSFKSSYEYHYQTLKSNVDMLKLIQLGLTFSD-EN 85
+ K VD YV++D EF G+ + K++ + Y+ L+ + ++Q+G+TF +N
Sbjct: 15 LEKHVDSAHYVSIDCEFSGLLRDFNLNNKNTLQDRYELLRKSSIRYTILQIGITFIYLQN 74
Query: 86 GNLPTCGTDKYCVWQFNFREFDVNEDIFAN-DSIELLKQSGINFTKNNEIGI 136
+C V E + D + SI+ L Q G +F K G+
Sbjct: 75 NGKSSCIPVNINVSPLVKDELHLKRDFCSEASSIKFLIQQGFDFNKQLTEGV 126
>sp|Q5RG82|NS1BA_DANRE Influenza virus NS1A-binding protein homolog A OS=Danio rerio
GN=ivns1abpa PE=2 SV=1
Length = 643
Score = 31.6 bits (70), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 44/98 (44%), Gaps = 12/98 (12%)
Query: 6 KGDSIQIREVWSDNLELEFDLIRKIVDDYPYVAMDTEFPGIALRP----------VGSFK 55
K D ++EV+S L+ D +++I DY MD++ I+ R +G
Sbjct: 96 KADKELVKEVYSAAKRLKMDRVKQICGDYLLSKMDSQ-SAISYRNFASCMGDGRLLGKID 154
Query: 56 SSYEYHYQTLKSNVDMLKLIQLGL-TFSDENGNLPTCG 92
S + H + D LKL +L L ++N LP+ G
Sbjct: 155 SYIQEHLLEVSEQEDFLKLPRLKLEVMLEDNLTLPSNG 192
>sp|Q98QB3|PRIM_MYCPU DNA primase OS=Mycoplasma pulmonis (strain UAB CTIP) GN=dnaG PE=3
SV=1
Length = 602
Score = 31.6 bits (70), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 37/68 (54%), Gaps = 12/68 (17%)
Query: 116 DSIELLKQSGINF-----TKNNEIGIDAMRFGEFMMSSGIVLSDSMHWVTFHSGYDFGYL 170
D ELLKQ G NF KN + ID + EF+++S +++S H ++F + DF
Sbjct: 336 DPDELLKQKGANFLKELIEKNKKPAIDYLY--EFLLTSKYNINNSEHLISFVN--DFA-- 389
Query: 171 LKLLTCQN 178
LL+ QN
Sbjct: 390 -PLLSSQN 396
>sp|Q96GM8|TOE1_HUMAN Target of EGR1 protein 1 OS=Homo sapiens GN=TOE1 PE=1 SV=1
Length = 510
Score = 31.6 bits (70), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 26/101 (25%), Positives = 38/101 (37%), Gaps = 4/101 (3%)
Query: 36 YVAMDTEFPGIALRPVGSFKSSYEYHYQTLKSNVDMLKLIQLGLTFSDENGNLPTCGTDK 95
+VA+DTE G+ R E Y+ + ++ LGL P G
Sbjct: 60 FVAVDTELSGLGDR-KSLLNQCIEERYKAVCHAARTRSILSLGLACFKRQ---PDKGEHS 115
Query: 96 YCVWQFNFREFDVNEDIFANDSIELLKQSGINFTKNNEIGI 136
Y FN + E + S++ L Q G NF + GI
Sbjct: 116 YLAQVFNLTLLCMEEYVIEPKSVQFLIQHGFNFNQQYAQGI 156
>sp|Q90ZA1|PARN_XENLA Poly(A)-specific ribonuclease PARN OS=Xenopus laevis GN=parn PE=1
SV=1
Length = 631
Score = 31.6 bits (70), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 58/130 (44%), Gaps = 19/130 (14%)
Query: 14 EVWSDNLELEFDLIRKIVDDYPYVAMDTEFPGIALRP-VGSFKSSY---EYHYQTLKSNV 69
E+ N + + K +++ ++A+D EF GI+ P V + + + E Y LK +
Sbjct: 2 EITRSNFKDTLPKVYKAIEEADFLAIDGEFSGISDGPSVSTLTNGFDTPEERYTKLKKHS 61
Query: 70 DMLKLIQLGL-TFSDENGNLPTCGTDKYCVWQFNF----REFDVNED----IFANDSIEL 120
L Q GL TF+ +N KY + FNF + F+ N + + SI+
Sbjct: 62 MEFLLFQFGLCTFNYDNTEA------KYLMKSFNFYIFPKPFNRNSPDKKFVCQSSSIDF 115
Query: 121 LKQSGINFTK 130
L G +F K
Sbjct: 116 LANQGFDFNK 125
>sp|Q4FM76|COAX_PELUB Type III pantothenate kinase OS=Pelagibacter ubique (strain
HTCC1062) GN=coaX PE=3 SV=1
Length = 248
Score = 30.8 bits (68), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 39/81 (48%), Gaps = 15/81 (18%)
Query: 172 KLLTCQNLPDTQVEFFNLIRIYFPTVYDIK-HLMKFCNSLHGGLNKLAELLEVERVGICH 230
K L C +P FN ++I+F VY IK H +K N LNKL + ++V
Sbjct: 55 KCLFCSVVPKK----FNAVKIFFKKVYKIKCHELKKLN-----LNKLIK-IKVNY----K 100
Query: 231 QAGSDSLLTASTFRKLKENFF 251
Q GSD L A + K+NF
Sbjct: 101 QIGSDRLANAISIINNKDNFI 121
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.139 0.420
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 106,444,137
Number of Sequences: 539616
Number of extensions: 4566615
Number of successful extensions: 9546
Number of sequences better than 100.0: 44
Number of HSP's better than 100.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 9460
Number of HSP's gapped (non-prelim): 47
length of query: 274
length of database: 191,569,459
effective HSP length: 116
effective length of query: 158
effective length of database: 128,974,003
effective search space: 20377892474
effective search space used: 20377892474
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 60 (27.7 bits)