Query 023991
Match_columns 274
No_of_seqs 152 out of 507
Neff 6.6
Searched_HMMs 29240
Date Mon Mar 25 16:18:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023991.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023991hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4gmj_B CCR4-NOT transcription 100.0 1.1E-91 3.7E-96 641.8 22.3 264 1-269 1-266 (285)
2 1uoc_A POP2; hydrolase, DEDD n 100.0 1.2E-90 4.3E-95 634.4 23.3 262 4-269 8-289 (289)
3 2p51_A SPCC18.06C protein; DED 100.0 2E-90 6.8E-95 640.7 24.3 261 5-270 16-277 (333)
4 2d5r_A CCR4-NOT transcription 100.0 2.2E-90 7.4E-95 623.1 22.8 250 11-265 1-252 (252)
5 3d45_A Poly(A)-specific ribonu 100.0 2.4E-62 8.1E-67 480.2 21.5 246 12-263 2-418 (507)
6 2a1r_A Poly(A)-specific ribonu 100.0 2.4E-53 8.2E-58 409.0 19.1 233 13-251 1-398 (430)
7 3v9w_A Ribonuclease T; DEDD nu 98.9 2E-08 6.7E-13 88.1 13.6 188 23-251 26-222 (235)
8 1w0h_A 3'-5' exonuclease ERI1; 98.8 1.1E-07 3.9E-12 81.1 15.8 174 35-251 11-196 (204)
9 2f96_A Ribonuclease T; RNAse, 98.8 1.2E-07 4.2E-12 82.5 14.6 183 27-251 22-214 (224)
10 2gui_A DNA polymerase III epsi 98.7 2.5E-07 8.4E-12 78.5 13.6 172 34-249 9-184 (194)
11 2p1j_A POLIII, DNA polymerase 98.7 4E-07 1.4E-11 77.0 14.7 164 31-249 9-175 (186)
12 1zbh_A 3'-5' exonuclease ERI1; 98.7 7.7E-07 2.6E-11 81.1 16.2 175 34-251 78-264 (299)
13 2xri_A ERI1 exoribonuclease 3; 98.6 1.9E-06 6.6E-11 75.1 16.6 171 35-250 32-214 (224)
14 3cg7_A CRN-4, cell death-relat 98.5 2.1E-06 7.1E-11 78.7 15.7 174 35-251 20-210 (308)
15 3mxm_B Three prime repair exon 98.5 1.2E-06 4.1E-11 77.6 13.3 178 35-251 13-216 (242)
16 1zbu_A ERI-1 homolog, 3'-5' ex 98.5 1.7E-06 5.7E-11 80.9 13.7 176 34-251 128-314 (349)
17 1y97_A Three prime repair exon 98.5 2E-06 6.8E-11 75.2 12.9 178 34-251 10-211 (238)
18 3u3y_B Three prime repair exon 98.3 6.6E-06 2.3E-10 75.8 14.0 177 35-251 13-216 (314)
19 1wlj_A Interferon stimulated g 98.3 4.5E-06 1.5E-10 70.8 10.8 158 33-251 4-170 (189)
20 2qxf_A Exodeoxyribonuclease I; 98.2 1.2E-05 4E-10 78.2 12.7 175 31-249 6-200 (482)
21 2igi_A Oligoribonuclease; RNAs 98.0 8.3E-05 2.8E-09 62.0 13.3 169 33-251 4-178 (180)
22 2gbz_A Oligoribonuclease; ORN, 97.8 0.00025 8.4E-09 60.2 12.1 170 32-251 7-182 (194)
23 3tr8_A Oligoribonuclease; tran 97.4 0.003 1E-07 53.6 13.7 169 32-252 7-183 (186)
24 2kfn_A Klenow fragment of DNA 96.2 0.14 4.8E-06 50.7 16.1 86 151-252 86-195 (605)
25 2hbj_A Exosome complex exonucl 62.1 21 0.00073 33.2 7.8 85 152-252 156-256 (410)
26 1yt3_A Ribonuclease D, RNAse D 51.6 39 0.0013 30.7 7.5 84 152-251 71-171 (375)
27 3saf_A Exosome component 10; e 47.5 41 0.0014 31.6 7.1 84 152-251 179-278 (428)
28 2ogf_A Hypothetical protein MJ 42.7 12 0.00039 29.4 2.0 46 159-204 23-72 (122)
29 4i4d_A Peptide synthetase NRPS 40.3 37 0.0013 24.2 4.4 35 217-251 25-62 (93)
30 2i52_A Hypothetical protein; s 39.8 14 0.00046 29.0 2.0 45 160-204 19-67 (121)
31 2e6m_A Werner syndrome ATP-dep 35.4 56 0.0019 26.7 5.4 84 152-251 93-196 (208)
32 1dny_A Non-ribosomal peptide s 35.3 39 0.0013 24.1 3.9 35 217-251 23-60 (91)
33 4g3h_A Arginase (ROCF); rossma 33.2 68 0.0023 28.9 5.9 64 14-80 207-280 (330)
34 1vk0_A Hypothetical protein; h 31.5 82 0.0028 26.3 5.8 82 151-248 104-205 (206)
35 2fi0_A Conserved domain protei 24.5 52 0.0018 23.3 2.8 37 114-150 22-75 (81)
36 2e6m_A Werner syndrome ATP-dep 23.7 82 0.0028 25.6 4.4 21 26-46 32-52 (208)
37 2cev_A Protein (arginase); enz 22.5 1.2E+02 0.004 26.6 5.4 65 14-80 197-270 (299)
38 3pv8_A DNA polymerase I; DNA p 20.5 1.9E+02 0.0065 28.2 6.8 83 153-251 79-182 (592)
39 4dfk_A DNA polymerase I, therm 20.4 1.1E+02 0.0039 29.5 5.2 52 196-250 77-128 (540)
40 1dp7_P MHC class II transcript 20.3 61 0.0021 23.1 2.4 21 177-197 34-54 (76)
No 1
>4gmj_B CCR4-NOT transcription complex subunit 7; mRNA decay, deadenylase, RNA bindin; HET: GOL; 2.70A {Homo sapiens}
Probab=100.00 E-value=1.1e-91 Score=641.80 Aligned_cols=264 Identities=53% Similarity=0.985 Sum_probs=247.7
Q ss_pred CCCCCCCCcceEEEcCcccHHHHHHHHHHHhhcCCeeeEecccccccccCCCCCCCCHHHHHHHHHhcccccceeeeeee
Q 023991 1 MSLLPKGDSIQIREVWSDNLELEFDLIRKIVDDYPYVAMDTEFPGIALRPVGSFKSSYEYHYQTLKSNVDMLKLIQLGLT 80 (274)
Q Consensus 1 ~~~~~~~~~~~v~eVw~~Nf~~e~~~I~~~i~~~~fIAiDtEf~Gl~~~~~~~~~~t~~~rY~~lr~nv~~~~iiQlGlt 80 (274)
||+.+...+..|||||++||++||+.|+++|++|+||||||||||++++|.+.+++++++||+++|+|||.++|||+|||
T Consensus 1 ~p~~~~~~~~~IreVw~~Nl~ee~~~I~~~i~~~~fVAiDtEFpGvv~rp~~~~~~t~d~~Y~~lr~nvd~l~iIQlGLt 80 (285)
T 4gmj_B 1 MPAATVDHSQRICEVWACNLDEEMKKIRQVIRKYNYVAMDTEFPGVVARPIGEFRSNADYQYQLLRCNVDLLKIIQLGLT 80 (285)
T ss_dssp ---------CCEEEECHHHHHHHHHHHHHHHHHCCEEEEEEECCCCCCCCTTCCTTSTTHHHHHHHHHHTTSCCCEEEEE
T ss_pred CCCCcCCCCCeEEEechhHHHHHHHHHHHHHhcCCEEEEEEEecCccCCCCCccCCCHHHHHHHHHHHHHhhcceeEEEE
Confidence 77888888889999999999999999999999999999999999999999888999999999999999999999999999
Q ss_pred eeecCCCCCCCCCCCeeEEEeeecccCCCCCCCchhHHHHHHHcCCCccchhhcCCchhHHHHHHHHhcccccCCcceEE
Q 023991 81 FSDENGNLPTCGTDKYCVWQFNFREFDVNEDIFANDSIELLKQSGINFTKNNEIGIDAMRFGEFMMSSGIVLSDSMHWVT 160 (274)
Q Consensus 81 ~~~~~g~~p~~~~~~~~~w~FNF~~F~~~~d~~~~~Si~fL~~~GfDFnk~~~~GI~~~~f~e~l~~Sgl~~~~~v~wvt 160 (274)
+|+++|+.|. .+++|||||+ |+..+|+|+++||+||+++||||||+.++||++.+|+|++++||++++++++||+
T Consensus 81 ~f~~~g~~p~----~~~~wqFNF~-f~~~~d~~~~~SI~fL~~~G~DF~k~~~~GI~~~~f~ell~~sglvl~~~v~Wvt 155 (285)
T 4gmj_B 81 FMNEQGEYPP----GTSTWQFNFK-FNLTEDMYAQDSIELLTTSGIQFKKHEEEGIETQYFAELLMTSGVVLCEGVKWLS 155 (285)
T ss_dssp EECTTSCCCS----SCCEEEEEBC-CCTTTSCCCHHHHHHHHHHTCCHHHHHHHCBCHHHHHHHHHTSSSSSCTTCEEEE
T ss_pred eeccCCCcCC----CeeEEEEEEE-eccccccccHHHHHHHHHcCCCHHHHHHcCCCHHHHHHHHHHhHHHhcCCCceEE
Confidence 9999999884 5899999999 9999999999999999999999999999999999999999999999999999999
Q ss_pred eccchhHHHHHHHhCCCCCCCChHHHHHHHHhhCCccccchhhhHhhhcccCcHHHHHHHcCCccCCCCccchhhHHHHH
Q 023991 161 FHSGYDFGYLLKLLTCQNLPDTQVEFFNLIRIYFPTVYDIKHLMKFCNSLHGGLNKLAELLEVERVGICHQAGSDSLLTA 240 (274)
Q Consensus 161 f~g~yD~~yL~k~l~~~~LP~~~~~F~~~l~~~FP~iyDtK~la~~~~~l~~~L~~la~~L~~~r~~~~HqAGsDs~lT~ 240 (274)
|||+|||+||+|+|++++||+++++|+++++.+||.|||||||++.|+++++||++||+.|+++|+|++||||||||||+
T Consensus 156 fH~~yDf~yL~k~lt~~~LP~~~~eF~~~l~~~FP~vYD~K~l~~~~~~l~ggL~~lA~~L~v~r~g~~HqAGsDSllT~ 235 (285)
T 4gmj_B 156 FHSGYDFGYLIKILTNSNLPEEELDFFEILRLFFPVIYDVKYLMKSCKNLKGGLQEVAEQLELERIGPQHQAGSDSLLTG 235 (285)
T ss_dssp SSCHHHHHHHHHHHHTSCCCSSHHHHHHHHHHHCSCEEEHHHHGGGSTTCCSCHHHHHHHTTCCCCSCTTSHHHHHHHHH
T ss_pred ecchhhHHHHHHHHhCCCCCCCHHHHHHHHHHHCchhhhHHHHHHhccccCChHHHHHHhCCCCCCCCCCcchhHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCC--ccccccEEeecCCCC
Q 023991 241 STFRKLKENFFSSS--LEKYAGVLYGLGVEN 269 (274)
Q Consensus 241 ~~F~~l~~~~~~~~--~~~~~g~i~Gl~~~~ 269 (274)
+||+||++.++++. .++|+|+|||||+..
T Consensus 236 ~~F~kl~~~~f~~~~~~~~~~g~l~Glg~~~ 266 (285)
T 4gmj_B 236 MAFFKMREMFFEDHIDDAKYCGHLYGLGSGS 266 (285)
T ss_dssp HHHHHHHHHHHTTCCCHHHHTTCCTTSSTTC
T ss_pred HHHHHHHHHHhcCCcchHHhCCEEeccCCCC
Confidence 99999999999753 468999999999753
No 2
>1uoc_A POP2; hydrolase, DEDD nuclease, mRNA degradation, poly(A) tail, transcription regulation, repressor, phosphorylation.; 2.3A {Saccharomyces cerevisiae} SCOP: c.55.3.9
Probab=100.00 E-value=1.2e-90 Score=634.43 Aligned_cols=262 Identities=39% Similarity=0.794 Sum_probs=239.3
Q ss_pred CCCCCcceEEEcCcccHHHHHHHHHHHhhcCCeeeEecccccccccCCCCCCCCHHHHHHHHHhcccccceeeeeeeeee
Q 023991 4 LPKGDSIQIREVWSDNLELEFDLIRKIVDDYPYVAMDTEFPGIALRPVGSFKSSYEYHYQTLKSNVDMLKLIQLGLTFSD 83 (274)
Q Consensus 4 ~~~~~~~~v~eVw~~Nf~~e~~~I~~~i~~~~fIAiDtEf~Gl~~~~~~~~~~t~~~rY~~lr~nv~~~~iiQlGlt~~~ 83 (274)
+|++..+.|||||++||++||+.|+++|++|+||||||||||++++|.+.+++++++||+++|+|||.++|||+|||+++
T Consensus 8 ~p~~~~~~i~eVw~~Nl~~e~~~I~~~i~~~~fVAmDtEFpGvv~rp~g~f~~~~d~~Yq~lr~nVd~l~iIQlGLt~~~ 87 (289)
T 1uoc_A 8 LPPPNYLFVRDVWKSNLYSEFAVIRQLVSQYNHVSISTEFVGTLARPIGTFRSKVDYHYQTMRANVDFLNPIQLGLSLSD 87 (289)
T ss_dssp CCCGGGGCCEEECTTTHHHHHHHHHHHTTTSCEEEEEEEEEC----------CHHHHHHHHHHHHHTTCEEEEEEEEEEC
T ss_pred CCCCCCcEEEEehhhhHHHHHHHHHHHHhhCCEEEEEeeecceeccCCcccCCCHHHHHHHHHHhhhhccceEEEEEEEc
Confidence 44455799999999999999999999999999999999999999999888887899999999999999999999999999
Q ss_pred cCCCCCCCCCCCeeEEEeeecccCCCCCCCchhHHHHHHHcCCCccchhhcCCchhHHHHHHHHhcccccCCcceEEecc
Q 023991 84 ENGNLPTCGTDKYCVWQFNFREFDVNEDIFANDSIELLKQSGINFTKNNEIGIDAMRFGEFMMSSGIVLSDSMHWVTFHS 163 (274)
Q Consensus 84 ~~g~~p~~~~~~~~~w~FNF~~F~~~~d~~~~~Si~fL~~~GfDFnk~~~~GI~~~~f~e~l~~Sgl~~~~~v~wvtf~g 163 (274)
++|+.|.. .+++|||||+ |+..+|+|+++||+||+++||||||+.++||++.+|+|+|++|||+++++|+||+|||
T Consensus 88 ~~g~~p~~---~~~~wqFNF~-F~~~~d~~~~~SI~fL~~~G~DF~k~~~~GI~~~~F~ell~~sgLvl~~~v~Witfhg 163 (289)
T 1uoc_A 88 ANGNKPDN---GPSTWQFNFE-FDPKKEIMSTESLELLRKSGINFEKHENLGIDVFEFSQLLMDSGLMMDDSVTWITYHA 163 (289)
T ss_dssp TTCCCCSS---SCSEEEEEBC-CCTTCCCCCHHHHHHHHHTTCCHHHHHHHCBCHHHHHHHHHTSSCSSCTTSEEEESST
T ss_pred cCCCcCCC---CcceEEEEEE-ECCccccccHHHHHHHHHcCCChhHHHHcCCCHHHHHHHHHhcCCccCCCceEEEccC
Confidence 99998852 4899999999 9999999999999999999999999999999999999999999999999999999999
Q ss_pred chhHHHHHHHhCCCCCCCChHHHHHHHHhhCCccccchhhhHhhhcccC---------------cHHHHHHHcCCccCCC
Q 023991 164 GYDFGYLLKLLTCQNLPDTQVEFFNLIRIYFPTVYDIKHLMKFCNSLHG---------------GLNKLAELLEVERVGI 228 (274)
Q Consensus 164 ~yD~~yL~k~l~~~~LP~~~~~F~~~l~~~FP~iyDtK~la~~~~~l~~---------------~L~~la~~L~~~r~~~ 228 (274)
+||||||+|+|++++||+++++|++.++.+||+|||+|||++.|.++++ ||++||+.||++|+|.
T Consensus 164 ~yDfgyL~k~Lt~~~LP~~~~~F~~~l~~~FP~iyD~K~l~~~~~~l~~~~~~~~~~~~~~~~~~L~~lA~~L~v~r~g~ 243 (289)
T 1uoc_A 164 AYDLGFLINILMNDSMPNNKEDFEWWVHQYMPNFYDLNLVYKIIQEFKNPQLQQSSQQQQQQQYSLTTLADELGLPRFSI 243 (289)
T ss_dssp THHHHHHHHHHTTSCCCSSHHHHHHHHHHHCSSEEEHHHHHHHHTTTCC-------------CCSHHHHHHHTTCCCCGG
T ss_pred cchHHHHHHHhccccCCcCHHHHHHHHHHhCccceeHHHHHHHHHhccCcccccccccccccCCCHHHHHHHcCCCccCc
Confidence 9999999999999999999999999999999999999999999987765 7999999999999999
Q ss_pred CccchhhHHHHHHHHHHHHHHhcC----C-CccccccEEeecCCCC
Q 023991 229 CHQAGSDSLLTASTFRKLKENFFS----S-SLEKYAGVLYGLGVEN 269 (274)
Q Consensus 229 ~HqAGsDs~lT~~~F~~l~~~~~~----~-~~~~~~g~i~Gl~~~~ 269 (274)
+|||||||+||++||+||++.++. + +.++++|+|||||.++
T Consensus 244 ~HqAGsDSllT~~~F~kl~~~~~~~~~~~~~~~~~~g~l~Gl~~~~ 289 (289)
T 1uoc_A 244 FTTTGGQSLLMLLSFCQLSKLSMHKFPNGTDFAKYQGVIYGIDGDQ 289 (289)
T ss_dssp GGSHHHHHHHHHHHHHHHHHHTTTBCTTSCBGGGGTTCSSCCTTCC
T ss_pred ccccHHHHHHHHHHHHHHHHHHhhhhcCCCChHHhCCEEeCcCCCC
Confidence 999999999999999999999873 2 4689999999999763
No 3
>2p51_A SPCC18.06C protein; DEDD nuclease fold, hydrolase, gene regulation; 1.40A {Schizosaccharomyces pombe} PDB: 3g0z_A 3g10_A
Probab=100.00 E-value=2e-90 Score=640.73 Aligned_cols=261 Identities=49% Similarity=0.902 Sum_probs=247.1
Q ss_pred CCCCcceEEEcCcccHHHHHHHHHHHhhcCCeeeEecccccccccCCCCCCCCHHHHHHHHHhcccccceeeeeeeeeec
Q 023991 5 PKGDSIQIREVWSDNLELEFDLIRKIVDDYPYVAMDTEFPGIALRPVGSFKSSYEYHYQTLKSNVDMLKLIQLGLTFSDE 84 (274)
Q Consensus 5 ~~~~~~~v~eVw~~Nf~~e~~~I~~~i~~~~fIAiDtEf~Gl~~~~~~~~~~t~~~rY~~lr~nv~~~~iiQlGlt~~~~ 84 (274)
+++..+.|||||++||++||+.|+++|++|+||||||||||++++|.+.+++++++||+++|+|||.++|||+|||++++
T Consensus 16 ~~~~~~~IreVw~~Nleee~~~Ir~~i~~~~fVAmDtEFpGvv~rp~g~f~~~~e~~Yq~lR~NVd~l~iIQlGLt~fd~ 95 (333)
T 2p51_A 16 ISSQISPIRDVWSTNLQQEMNLIMSLIERYPVVSMDTEFPGVVARPLGVFKSSDDYHYQTLRANVDSLKIIQIGLALSDE 95 (333)
T ss_dssp --CCSCSEEEECTTTHHHHHHHHHHHTTTSCEEEEEEECCCCCCCCCSCCSSSHHHHHHHHHHHHHHSCCCEEEEEEECT
T ss_pred CCCCCcEEEEehHhHHHHHHHHHHHHHhhCCEEEEeeeccccccccccccCCCHHHHHHHHHHhhhhccceEEEEEEEcc
Confidence 34566789999999999999999999999999999999999999998888888999999999999999999999999999
Q ss_pred CCCCCCCCCCCeeEEEeeecccCCCCCCCchhHHHHHHHcCCCccchhhcCCchhHHHHHHHHhcccccCCcceEEeccc
Q 023991 85 NGNLPTCGTDKYCVWQFNFREFDVNEDIFANDSIELLKQSGINFTKNNEIGIDAMRFGEFMMSSGIVLSDSMHWVTFHSG 164 (274)
Q Consensus 85 ~g~~p~~~~~~~~~w~FNF~~F~~~~d~~~~~Si~fL~~~GfDFnk~~~~GI~~~~f~e~l~~Sgl~~~~~v~wvtf~g~ 164 (274)
+|+.|. ++++|||||+ |+..+|+|+++||+||+++||||||+.++||++.+|+|+|++|||+++++|+||+|||+
T Consensus 96 ~G~~p~----~~~twqFNF~-F~~~~d~~~~~SI~fL~~~G~DF~k~~~~GI~~~~F~elL~~SGLvl~~~V~Witfhg~ 170 (333)
T 2p51_A 96 EGNAPV----EACTWQFNFT-FNLQDDMYAPESIELLTKSGIDFKKHQEVGIEPADFAELLIGSGLVLQEEVTWITFHSG 170 (333)
T ss_dssp TSCCCT----TCSEEEEEBC-CCTTTSCCCHHHHHHHHHTTCCHHHHHHHCBCHHHHHHHHHTTTSSSCTTCEEEESSCH
T ss_pred CCCCCC----CceeEEEEEE-ECCcccccCHHHHHHHHHcCCChhHHHHcCCCHHHHHHHHHhcCcccCCCceEEEeccc
Confidence 999884 5899999999 99999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHhCCCCCCCChHHHHHHHHhhCCccccchhhhHhhhcccCcHHHHHHHcCCccCCCCccchhhHHHHHHHHH
Q 023991 165 YDFGYLLKLLTCQNLPDTQVEFFNLIRIYFPTVYDIKHLMKFCNSLHGGLNKLAELLEVERVGICHQAGSDSLLTASTFR 244 (274)
Q Consensus 165 yD~~yL~k~l~~~~LP~~~~~F~~~l~~~FP~iyDtK~la~~~~~l~~~L~~la~~L~~~r~~~~HqAGsDs~lT~~~F~ 244 (274)
||||||+|+|++++||+++++|+++++.+||+|||||||++.|.++++||++||+.|+++|+|.+||||||||||++||+
T Consensus 171 YDfgyLlK~Lt~~~LP~~~~eF~~~l~~~FP~iYD~K~l~~~~~~l~ggL~~lA~~L~v~Rig~~HqAGsDSlLT~~~F~ 250 (333)
T 2p51_A 171 YDFAYLLKAMTQIPLPAEYEEFYKILCIYFPKNYDIKYIMKSVLNNSKGLQDIADDLQIHRIGPQHQAGSDALLTARIFF 250 (333)
T ss_dssp HHHHHHHHHHHCSCCCSSHHHHHHHHHHHSSSEEEHHHHHTTTTCCCCCHHHHHHHTTCCCCSCTTSHHHHHHHHHHHHH
T ss_pred hhHHHHHHHhcCCCCCCCHHHHHHHHHHHCcchhhHHHHHHHhccccCCHHHHHHHcCCCccCcchhhhhHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCC-CccccccEEeecCCCCC
Q 023991 245 KLKENFFSS-SLEKYAGVLYGLGVENG 270 (274)
Q Consensus 245 ~l~~~~~~~-~~~~~~g~i~Gl~~~~~ 270 (274)
||++.++++ +.++++|+|||||....
T Consensus 251 kl~~~~f~~~~~~~~~g~l~Gl~~~~~ 277 (333)
T 2p51_A 251 EIRSRYFDGSIDSRMLNQLYGLGSTGS 277 (333)
T ss_dssp HHHHHHHTTSCCGGGTTCCTTC-----
T ss_pred HHHHHhcCCCchhhhCCEEeccCcCch
Confidence 999999975 57899999999998754
No 4
>2d5r_A CCR4-NOT transcription complex subunit 7; poly(A) deadenylase, antiproliferative protein, transcription; 2.50A {Homo sapiens} SCOP: c.55.3.9
Probab=100.00 E-value=2.2e-90 Score=623.09 Aligned_cols=250 Identities=54% Similarity=1.031 Sum_probs=242.9
Q ss_pred eEEEcCcccHHHHHHHHHHHhhcCCeeeEecccccccccCCCCCCCCHHHHHHHHHhcccccceeeeeeeeeecCCCCCC
Q 023991 11 QIREVWSDNLELEFDLIRKIVDDYPYVAMDTEFPGIALRPVGSFKSSYEYHYQTLKSNVDMLKLIQLGLTFSDENGNLPT 90 (274)
Q Consensus 11 ~v~eVw~~Nf~~e~~~I~~~i~~~~fIAiDtEf~Gl~~~~~~~~~~t~~~rY~~lr~nv~~~~iiQlGlt~~~~~g~~p~ 90 (274)
.|||||++||++||+.|+++|++|+||||||||||++++|.+.+++++++||+++|+|||.++|||+|||+++++|+.|.
T Consensus 1 ~i~eVw~~Nl~~e~~~I~~~i~~~~fvAmDtEFpGvv~rp~g~f~~~~~~~Y~~lr~nVd~l~iIQlGlt~~~~~g~~p~ 80 (252)
T 2d5r_A 1 RICEVWACNLDEEMKKIRQVIRKYNYVAMDTEFPGVVARPIGEFRSNADYQYQLLRCNVDLLKIIQLGLTFMNEQGEYPP 80 (252)
T ss_dssp CEEEECGGGHHHHHHHHHHHHHHCCEEEEEEECCCCCCCCCSCCSSHHHHHHHHHHHHHTTCCCCEEEEEEECTTSCCCS
T ss_pred CeEEehhhhHHHHHHHHHHHHhhCCEEEEEeeecceecccCCCCCCCHHHHHHHHHHhhhhcceeEEEEEEEccCCCCCC
Confidence 48999999999999999999999999999999999999998888889999999999999999999999999999999884
Q ss_pred CCCCCeeEEEeeecccCCCCCCCchhHHHHHHHcCCCccchhhcCCchhHHHHHHHHhcccccCCcceEEeccchhHHHH
Q 023991 91 CGTDKYCVWQFNFREFDVNEDIFANDSIELLKQSGINFTKNNEIGIDAMRFGEFMMSSGIVLSDSMHWVTFHSGYDFGYL 170 (274)
Q Consensus 91 ~~~~~~~~w~FNF~~F~~~~d~~~~~Si~fL~~~GfDFnk~~~~GI~~~~f~e~l~~Sgl~~~~~v~wvtf~g~yD~~yL 170 (274)
.+++|||||+ |+..+|+|+++||+||+++||||||+.++|||+.+|+|+|++|||+++++|+||+|||+||||||
T Consensus 81 ----~~~~wqFNF~-F~~~~d~~~~~Si~fL~~~G~DF~k~~~~GI~~~~F~ell~~sglvl~~~v~Witfhg~yDf~yL 155 (252)
T 2d5r_A 81 ----GTSTWQFNFK-FNLTEDMYAQDSIELLTTSGIQFKKHEEEGIETQYFAELLMTSGVVLCEGVKWLSFHSGYDFGYL 155 (252)
T ss_dssp ----SCCEEEEEBC-CCTTTSCCCHHHHHHHHHHTCCHHHHHHHCBCHHHHHHHHHTTTSSSSSSCEEEESSCHHHHHHH
T ss_pred ----CceeEEEEEE-ECCcccccCHHHHHHHHHcCCChhHHHhcCCCHHHHHHHHHhcCcccCCCceEEEecCcchHHHH
Confidence 5899999999 99999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCCCCCCChHHHHHHHHhhCCccccchhhhHhhhcccCcHHHHHHHcCCccCCCCccchhhHHHHHHHHHHHHHHh
Q 023991 171 LKLLTCQNLPDTQVEFFNLIRIYFPTVYDIKHLMKFCNSLHGGLNKLAELLEVERVGICHQAGSDSLLTASTFRKLKENF 250 (274)
Q Consensus 171 ~k~l~~~~LP~~~~~F~~~l~~~FP~iyDtK~la~~~~~l~~~L~~la~~L~~~r~~~~HqAGsDs~lT~~~F~~l~~~~ 250 (274)
+|+|++++||+++++|++.++.+||+|||||||++.|.++++||++||+.|+++|+|++|||||||+||++||+||++.+
T Consensus 156 ~k~L~~~~LP~~~~~F~~~l~~~FP~iyD~K~l~~~~~~l~~gL~~la~~L~v~r~g~~HqAGsDsllT~~~F~km~~~~ 235 (252)
T 2d5r_A 156 IKILTNSNLPEEELDFFEILRLFFPVIYDVKYLMKSCKNLKGGLQEVAEQLELERIGPQHQAGSDSLLTGMAFFKMREMF 235 (252)
T ss_dssp HHHHHTSCCCSSHHHHHHHHHHHCSCEEEHHHHGGGCTTCCSSHHHHHHHHTCCCCSSTTSHHHHHHHHHHHHHHHHHHT
T ss_pred HHHhcCCCCCCCHHHHHHHHHHHCcchhhHHHHHHHhcccCCCHHHHHHHcCCCccCcccchhhhHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCC--ccccccEEeec
Q 023991 251 FSSS--LEKYAGVLYGL 265 (274)
Q Consensus 251 ~~~~--~~~~~g~i~Gl 265 (274)
+++. .++++|+||||
T Consensus 236 f~~~~~~~~~~g~l~gl 252 (252)
T 2d5r_A 236 FEDHIDDAKYCGHLYGL 252 (252)
T ss_dssp SCSSCCHHHHTTBCTTC
T ss_pred cCCCCCHHHcCCEecCC
Confidence 9763 57999999997
No 5
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=100.00 E-value=2.4e-62 Score=480.21 Aligned_cols=246 Identities=23% Similarity=0.290 Sum_probs=207.9
Q ss_pred EEEcCcccHHHHHHHHHHHhhcCCeeeEecccccccccCCCC----CCCCHHHHHHHHHhcccccceeeeeeeeeecCCC
Q 023991 12 IREVWSDNLELEFDLIRKIVDDYPYVAMDTEFPGIALRPVGS----FKSSYEYHYQTLKSNVDMLKLIQLGLTFSDENGN 87 (274)
Q Consensus 12 v~eVw~~Nf~~e~~~I~~~i~~~~fIAiDtEf~Gl~~~~~~~----~~~t~~~rY~~lr~nv~~~~iiQlGlt~~~~~g~ 87 (274)
|+|||++||+++|+.|+++|++|+||||||||||++.+|... +.+++++||+++|+||+.++|||+|||+|+++|+
T Consensus 2 ~m~V~~~Nf~~~l~~i~~~i~~~~fvaiD~Ef~Gi~~~~~~~~~~~~~~t~~~~Y~~~r~~v~~~~iiQlGlt~f~~~~~ 81 (507)
T 3d45_A 2 PMEIIRSNFKINLHKVYQAIEEADFFAIDGEFSGISDGPSVTALTSGFDTPEERYQKLKKHSMDFLLFQFGLCAFKYDHT 81 (507)
T ss_dssp CEEECHHHHHHHHHHHHHHHHHCSEEEEEEEESCSCC--------CBSCCHHHHHHHHHHHHTTBCEEEEEEEEEEECSS
T ss_pred CeEEeHHhHHHHHHHHHHHHhcCCEEEEeeeccCcCCCCCccccccccCCHHHHHHHHHHHHHhcccceEEEEEEecCCC
Confidence 689999999999999999999999999999999999887532 3678999999999999999999999999999998
Q ss_pred CCCCCCCCeeEEEeeecccCC-----CCC---CCchhHHHHHHHcCCCccchhhcCCchhHHHHHHH-----------Hh
Q 023991 88 LPTCGTDKYCVWQFNFREFDV-----NED---IFANDSIELLKQSGINFTKNNEIGIDAMRFGEFMM-----------SS 148 (274)
Q Consensus 88 ~p~~~~~~~~~w~FNF~~F~~-----~~d---~~~~~Si~fL~~~GfDFnk~~~~GI~~~~f~e~l~-----------~S 148 (274)
.+ .|++|||||++||. ..| +|+++||+||++|||||||++++||+|..++|... .+
T Consensus 82 ~~-----~~~~~~fNf~~fp~~~~~~~~d~~~~~~~~Si~fL~~~GfDFnk~~~~GI~yl~~~ee~~~~~~~~~~~~~~~ 156 (507)
T 3d45_A 82 DS-----KHVTKSFNFYVFPKPFSRSSPDVKFVCQSSSIDFLASQGFDFNKVFCSGIPYLNQEEERQLREQFDEKRSQAN 156 (507)
T ss_dssp SS-----CEEEEEEEEEBCCCCCSSSSCCCEEEEEHHHHHHHHTTTCCHHHHHTTCBCBCCHHHHHHHHHHSCC------
T ss_pred CC-----ceeEEeEEEEecCccccccCcccceeecHHHHHHHHHcCCChhhHHhcCCCCCChHHHHHHHHHHHhhhhhhh
Confidence 65 59999999999987 344 99999999999999999999999999987766532 11
Q ss_pred c-------------------------------------cc---c------------------------------------
Q 023991 149 G-------------------------------------IV---L------------------------------------ 152 (274)
Q Consensus 149 g-------------------------------------l~---~------------------------------------ 152 (274)
| +. +
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~I~~wl~~~~~~~l~i~~~n~~~r~Lv~q~l~~~fp~~v~~~~~~~~~~~~~i~v 236 (507)
T 3d45_A 157 GAGALAKCPVTIPEDQKKFIDQVIEKIEDFLQSEEKRSLELDPCTGFQRKLIYQTLSWKYPKGIHVETLETDKKERHIVI 236 (507)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCccccCCCcHHHHHHHHHHHHHhCCCceEeeeccCCCcceeEEE
Confidence 1 10 0
Q ss_pred -------------------------------------cCCcceEEeccchhHHHHHHHhCCCCCCCChHHHHHHHHhhCC
Q 023991 153 -------------------------------------SDSMHWVTFHSGYDFGYLLKLLTCQNLPDTQVEFFNLIRIYFP 195 (274)
Q Consensus 153 -------------------------------------~~~v~wvtf~g~yD~~yL~k~l~~~~LP~~~~~F~~~l~~~FP 195 (274)
..+..||+||+.+|++||++.++ +|||+++++|++.++.+||
T Consensus 237 ~~~~~e~~~~~~~~~~~~~~~~~~~~~Gfr~v~~~L~~~~kpiVgHN~l~Dl~~l~~~F~-~pLP~~~~eFk~~i~~lFP 315 (507)
T 3d45_A 237 SKVDEEERKRREQEKYTKEQEELNDAVGFSRVIHAIANSGKLVVGHNMLLDVMHTIHQFY-CPLPADLNEFKEMAICVFP 315 (507)
T ss_dssp ---------------CCSTHHHHHHHSBTHHHHHHHHHHCCEEEESSCHHHHHHHHHHHT-CSCCSSHHHHHHHHHHHCS
T ss_pred EeCCHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhCCCeEEEechHHHHHHHHHHhc-CCCCCCHHHHHHHHHHhCC
Confidence 01468999999999999999998 7999999999999999999
Q ss_pred ccccchhhhHh--hhcc--cCcHHHHHHHcC-----Ccc-------------CCCCccchhhHHHHHHHHHHHHHHhcC-
Q 023991 196 TVYDIKHLMKF--CNSL--HGGLNKLAELLE-----VER-------------VGICHQAGSDSLLTASTFRKLKENFFS- 252 (274)
Q Consensus 196 ~iyDtK~la~~--~~~l--~~~L~~la~~L~-----~~r-------------~~~~HqAGsDs~lT~~~F~~l~~~~~~- 252 (274)
.|||||||++. +..+ .++|++|++.|+ .++ .++.|||||||||||.||++|++.+..
T Consensus 316 ~i~DTK~la~~~~~~~~~~~~~L~~l~~~l~~~~~~~p~i~~~~~~~~y~~~~~~~HeAGyDA~mTg~~F~kl~~~l~~~ 395 (507)
T 3d45_A 316 RLLDTKLMASTQPFKDIINNTSLAELEKRLKETPFDPPKVESAEGFPSYDTASEQLHEAGYDAYITGLCFISMANYLGSL 395 (507)
T ss_dssp CEEEHHHHTTSTTHHHHCCCCCHHHHHHHTTSTTCCCCCEEECTTSCCCC----CCCCHHHHHHHHHHHHHHHHHHHCC-
T ss_pred ceeEhHhhhhcCccccccCCCCHHHHHHHHhccCCCCCeEEecccccccccCCCCcccHHHHHHHHHHHHHHHHHHHhhc
Confidence 99999999997 4444 689999999997 333 467899999999999999999988751
Q ss_pred ----C--------CccccccEEe
Q 023991 253 ----S--------SLEKYAGVLY 263 (274)
Q Consensus 253 ----~--------~~~~~~g~i~ 263 (274)
. ....+.|+|+
T Consensus 396 ~~~~~~~~~~~~~~l~~~~N~l~ 418 (507)
T 3d45_A 396 LSPPKMCVSARSKLIEPFFNKLF 418 (507)
T ss_dssp --------CCSCSSSGGGTTEEC
T ss_pred cCCcccccccchhHHHhhheeee
Confidence 0 1356888877
No 6
>2a1r_A Poly(A)-specific ribonuclease PARN; DEDD, nuclease domain, hydrolase-RNA complex; 2.60A {Homo sapiens} PDB: 2a1s_A
Probab=100.00 E-value=2.4e-53 Score=408.95 Aligned_cols=233 Identities=22% Similarity=0.288 Sum_probs=192.7
Q ss_pred EEcCcccHHHHHHHHHHHhhcCCeeeEecccccccccCCC----CCCCCHHHHHHHHHhcccccceeeeeeeeeecCCCC
Q 023991 13 REVWSDNLELEFDLIRKIVDDYPYVAMDTEFPGIALRPVG----SFKSSYEYHYQTLKSNVDMLKLIQLGLTFSDENGNL 88 (274)
Q Consensus 13 ~eVw~~Nf~~e~~~I~~~i~~~~fIAiDtEf~Gl~~~~~~----~~~~t~~~rY~~lr~nv~~~~iiQlGlt~~~~~g~~ 88 (274)
.|||++||++.++.|+++|++|+||||||||||++.+|.. ...+++++||+++|+||+.++|||+|||+|+++|+.
T Consensus 1 M~V~r~nf~~~l~~i~~~i~~~~fVAiD~Ef~Gi~~~~~~~~~~~~~~s~e~~Y~~lr~nv~~~~iiQlGlt~f~~~~~~ 80 (430)
T 2a1r_A 1 MEIIRSNFKSNLHKVYQAIEEADFFAIDGEFSGISDGPSVSALTNGFDTPEERYQKLKKHSMDFLLFQFGLCTFKYDYTD 80 (430)
T ss_dssp CEECHHHHHHHHHHHHHHHHHCSEEEEEEEESCSCSSSCC-----CCCCHHHHHHHHHHHTTTBCEEEEEEEEEEEETTT
T ss_pred CceeHHHHHHHHHHHHHHHhcCCEEEEeeeeccccCCCccccccccCCCHHHHHHHHHHHHhhcceeeEEEEEEeecCCC
Confidence 4899999999999999999999999999999999988752 235689999999999999999999999999999987
Q ss_pred CCCCCCCeeEEEeeecccCC--------CCCCCchhHHHHHHHcCCCccchhhcCCchhHHHHHH---------------
Q 023991 89 PTCGTDKYCVWQFNFREFDV--------NEDIFANDSIELLKQSGINFTKNNEIGIDAMRFGEFM--------------- 145 (274)
Q Consensus 89 p~~~~~~~~~w~FNF~~F~~--------~~d~~~~~Si~fL~~~GfDFnk~~~~GI~~~~f~e~l--------------- 145 (274)
+ .|++|||||++||. .+++|+++||+||++||||||+++++||+|..++|.-
T Consensus 81 ~-----~~~~~~fNF~~FP~~~~~~~~~~~~~~~~~Si~fL~~~GfDFnk~~~~GI~y~~~~ee~~~r~~~~~~~~~~~~ 155 (430)
T 2a1r_A 81 S-----KYITKSFNFYVFPKPFNRSSPDVKFVCQSSSIDFLASQGFDFNKVFRNGIPYLNQEEERQLREQYDEKRSQANG 155 (430)
T ss_dssp T-----EEEEEEEEEEBCCCCSSSSSCCCEEEEEHHHHHHHHHTTCCHHHHHTTCBCBCCHHHHHHTC------------
T ss_pred C-----ceeEEEEEEEeccccccccccchhhhccHHHHHHHHHcCCChhhHhhcCcCccCHHHHHHHHHHHHhhhhhhcc
Confidence 5 69999999999953 1368999999999999999999999999994432210
Q ss_pred ------------------------------------HH------------hcc----------------c----------
Q 023991 146 ------------------------------------MS------------SGI----------------V---------- 151 (274)
Q Consensus 146 ------------------------------------~~------------Sgl----------------~---------- 151 (274)
.. +|. +
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~l~~~~~~~l~l~~~~~~qr~Lv~q~l~~~fp~~~~~~~~~~~~~ 235 (430)
T 2a1r_A 156 AGALSYVSPNTSKCPVTIPEDQKKFIDQVVEKIEDLLQSEENKNLDLEPCTGFQRKLIYQTLSWKYPKGIHVETLETEKK 235 (430)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccCccccccccCCcHHHHHHHHHHHHHHHHHHcCCCCCccccCCCcHHHHHHHHHHHHHhCCCceeeeeeeecCC
Confidence 00 000 0
Q ss_pred ----c--------------------------cCCcce------------EEeccchhHHHHHHHhCCCCCCCChHHHHHH
Q 023991 152 ----L--------------------------SDSMHW------------VTFHSGYDFGYLLKLLTCQNLPDTQVEFFNL 189 (274)
Q Consensus 152 ----~--------------------------~~~v~w------------vtf~g~yD~~yL~k~l~~~~LP~~~~~F~~~ 189 (274)
. ...+.| |+|++.+|+.|+++.+. +|||+++++|++.
T Consensus 236 ~~~v~v~k~~~e~~~~~e~~~~~~~~~~l~~~~Gfr~V~~~L~~s~KpiVGHN~llDl~~l~~~F~-~pLP~~~~eFk~~ 314 (430)
T 2a1r_A 236 ERYIVISKVDEEERKRREQQKHAKEQEELNDAVGFSRVIHAIANSGKLVIGHNMLLDVMHTVHQFY-CPLPADLSEFKEM 314 (430)
T ss_dssp ---------------------CTTHHHHHHTTSBTHHHHHHHHHHCCEEEESSCHHHHHHHHHHHT-CCCCSSHHHHHHH
T ss_pred ceEEEEEeCCHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhCCCceEechhHHHHHHHHHHhc-cCCCCCHHHHHHH
Confidence 0 000223 67888999999999986 6999999999999
Q ss_pred HHhhCCccccchhhhHhhh--cc--cCcHHHHHHHcCCc------------------cCCCCccchhhHHHHHHHHHHHH
Q 023991 190 IRIYFPTVYDIKHLMKFCN--SL--HGGLNKLAELLEVE------------------RVGICHQAGSDSLLTASTFRKLK 247 (274)
Q Consensus 190 l~~~FP~iyDtK~la~~~~--~l--~~~L~~la~~L~~~------------------r~~~~HqAGsDs~lT~~~F~~l~ 247 (274)
++++||.|||||||++... .+ .++|+.|.+.|+-. ..+..|+|||||||||.||++|.
T Consensus 315 i~~lFP~i~DTK~la~~~~~~~~~~~~sL~~l~~~l~~~~~~~p~i~~~~~~~~y~~~~~~~HeAGyDa~mTG~vFi~l~ 394 (430)
T 2a1r_A 315 TTCVFPRLLDTKLMASTQPFKDIINNTSLAELEKRLKETPFNPPKVESAEGFPSYDTASEQLHEAGYDAYITGLCFISMA 394 (430)
T ss_dssp HHHHCSSEEEHHHHHTSTTTTTTCSCCSHHHHHHHTTSTTCCCCCEEECTTCCCC-----CCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHCCceeehHHhhhccchhhccCCCCHHHHHHHHHhCCCCCCeeecCCCccccccCCCCccchHHHHHHHHHHHHHHH
Confidence 9999999999999998863 22 36899999988632 13678999999999999999999
Q ss_pred HHhc
Q 023991 248 ENFF 251 (274)
Q Consensus 248 ~~~~ 251 (274)
+.+.
T Consensus 395 ~~l~ 398 (430)
T 2a1r_A 395 NYLG 398 (430)
T ss_dssp HHHG
T ss_pred HHHh
Confidence 8864
No 7
>3v9w_A Ribonuclease T; DEDD nucleases family, EXO-nucleases, hydrolase-DNA complex; HET: DNA; 1.70A {Escherichia coli} PDB: 3ngy_A 3v9u_A* 3ngz_A* 3va3_A* 3v9z_A* 3nh0_A 3nh2_A 3nh1_A* 3v9s_A* 3v9x_A* 3va0_A* 2is3_A
Probab=98.90 E-value=2e-08 Score=88.10 Aligned_cols=188 Identities=13% Similarity=0.161 Sum_probs=124.2
Q ss_pred HHHHHHHHhhcCCeeeEecccccccccCCCCCCCCHHHHHHHHHhcccccceeeeeeeeee--cCCCCCCCCCCCeeEEE
Q 023991 23 EFDLIRKIVDDYPYVAMDTEFPGIALRPVGSFKSSYEYHYQTLKSNVDMLKLIQLGLTFSD--ENGNLPTCGTDKYCVWQ 100 (274)
Q Consensus 23 e~~~I~~~i~~~~fIAiDtEf~Gl~~~~~~~~~~t~~~rY~~lr~nv~~~~iiQlGlt~~~--~~g~~p~~~~~~~~~w~ 100 (274)
++..+...++...||++|+|.||+... .-.|||+|+..++ .+|+. .....
T Consensus 26 ~~~~l~~~l~~~~~vviD~ETTGl~~~---------------------~~~IieIgav~~~~~~~g~i-------~~~~~ 77 (235)
T 3v9w_A 26 QLTGLCDRFRGFYPVVIDVETAGFNAK---------------------TDALLEIAAITLKMDEQGWL-------MPDTT 77 (235)
T ss_dssp ---CHHHHTTTEEEEEEEEEESSSCTT---------------------TBCEEEEEEEEEEECTTSCE-------EEEEE
T ss_pred cccCchhcccCCcEEEEEEeCCCCCCC---------------------CCeEEEEEEEEEEEcCCCcc-------cccce
Confidence 344456668889999999999998421 1249999999886 35542 14567
Q ss_pred eeecccCCCCCCCchhHHHHHHHcCCCccchhhcCCchhHHHHHHHHh--cccc---cCCcceEEeccchhHHHHHHHhC
Q 023991 101 FNFREFDVNEDIFANDSIELLKQSGINFTKNNEIGIDAMRFGEFMMSS--GIVL---SDSMHWVTFHSGYDFGYLLKLLT 175 (274)
Q Consensus 101 FNF~~F~~~~d~~~~~Si~fL~~~GfDFnk~~~~GI~~~~f~e~l~~S--gl~~---~~~v~wvtf~g~yD~~yL~k~l~ 175 (274)
|+.+.-|.......+.+.+. +|+.-......|.+.....+.+..- ..+. .++..+|+++..||+.+|.+.+.
T Consensus 78 f~~~v~P~~~~~i~~~~~~i---~GIt~e~~v~~~~~~~~vl~~~~~~l~~~~~~~~~~~~~lVahN~~fD~~~L~~~~~ 154 (235)
T 3v9w_A 78 LHFHVEPFVGANLQPEALAF---NGIDPNDPDRGAVSGYEALHEIFKVVRKGIKASGCNRAIMVAHNANFDHSFMMAAAE 154 (235)
T ss_dssp EEEEBCCCTTCBCCHHHHHH---HCCCTTCGGGCCBCHHHHHHHHHHHHHHHHTTTTCCEEEEEETTTHHHHHHHHHHHH
T ss_pred EEEEECCCCCCCCCHHHHHH---hCCCHHHHHhcCCCHHHHHHHHHHHHHHHhhhccCCCcEEEEeChHHHHHHHHHHHH
Confidence 77762232233456666553 7887765677788776433333221 0000 03457888999999999987763
Q ss_pred CCCCCCChHHHHHHHHhhCC-ccccchhhhHhhhcccCcHHHHHHHcCCccCC-CCccchhhHHHHHHHHHHHHHHhc
Q 023991 176 CQNLPDTQVEFFNLIRIYFP-TVYDIKHLMKFCNSLHGGLNKLAELLEVERVG-ICHQAGSDSLLTASTFRKLKENFF 251 (274)
Q Consensus 176 ~~~LP~~~~~F~~~l~~~FP-~iyDtK~la~~~~~l~~~L~~la~~L~~~r~~-~~HqAGsDs~lT~~~F~~l~~~~~ 251 (274)
...+|.. .+.+ .++||..+++..-. .-+|..+++.+|++..+ ..|.|..|+..|+++|.+|.+.+.
T Consensus 155 ~~g~~~~---------p~~~~~~~Dt~~la~~~~p-~~~L~~l~~~~gi~~~~~~~H~Al~DA~~ta~l~~~l~~~l~ 222 (235)
T 3v9w_A 155 RASLKRN---------PFHPFATFDTAALAGLALG-QTVLSKACQTAGMDFDSTQAHSALYDTERTAVLFCEIVNRWK 222 (235)
T ss_dssp HTTCCCC---------CEEEEEEEEHHHHHHHHHS-CCSHHHHHHHHTCCCCTTTTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HcCCCCC---------CCCCCcEEEhHHHHHHHhC-CCCHHHHHHHcCCCCCCCCCcChHHHHHHHHHHHHHHHHHHH
Confidence 2122100 0111 47899888887632 24899999999998754 799999999999999999998775
No 8
>1w0h_A 3'-5' exonuclease ERI1; nuclease domain, hydrolase; HET: AMP; 1.59A {Homo sapiens} SCOP: c.55.3.5
Probab=98.83 E-value=1.1e-07 Score=81.06 Aligned_cols=174 Identities=13% Similarity=0.044 Sum_probs=115.4
Q ss_pred CeeeEecccccccccCCCCCCCCHHHHHHHHHhcccccceeeeeeeeeec-CCCCCCCCCCCeeEEEeeecccCCCC-CC
Q 023991 35 PYVAMDTEFPGIALRPVGSFKSSYEYHYQTLKSNVDMLKLIQLGLTFSDE-NGNLPTCGTDKYCVWQFNFREFDVNE-DI 112 (274)
Q Consensus 35 ~fIAiDtEf~Gl~~~~~~~~~~t~~~rY~~lr~nv~~~~iiQlGlt~~~~-~g~~p~~~~~~~~~w~FNF~~F~~~~-d~ 112 (274)
.||++|+|.||+..... ...-.|||+|....+. +|+ ....|+.+ .+... ..
T Consensus 11 ~~vviD~ETTGl~~~~~-----------------~~~~~Iieigav~~~~~~g~---------i~~~f~~l-v~P~~~~~ 63 (204)
T 1w0h_A 11 YICIIDFEATCEEGNPP-----------------EFVHEIIEFPVVLLNTHTLE---------IEDTFQQY-VRPEINTQ 63 (204)
T ss_dssp EEEECCCEECCCTTCCT-----------------TSCCCEEEEEEEEEETTTCS---------EEEEEEEE-BCCSSSCS
T ss_pred EEEEEEEecCCcCCCCC-----------------CCCCcEEEEEEEEEECCCCE---------EeeeeeeE-ECCCCCCc
Confidence 68999999999853210 0123599999999984 565 23457766 33333 24
Q ss_pred CchhHHHHHHHcCCCccchhhcCCchhHHHH----HHHHhcccccCCcceEEeccchhHH-HHHHHhC--CCCCCCChHH
Q 023991 113 FANDSIELLKQSGINFTKNNEIGIDAMRFGE----FMMSSGIVLSDSMHWVTFHSGYDFG-YLLKLLT--CQNLPDTQVE 185 (274)
Q Consensus 113 ~~~~Si~fL~~~GfDFnk~~~~GI~~~~f~e----~l~~Sgl~~~~~v~wvtf~g~yD~~-yL~k~l~--~~~LP~~~~~ 185 (274)
.++.+.+. +|+.=..+. .|.+..+..+ .+-...+ ..+....|++++.||+. +|-+.+. +-++|.
T Consensus 64 i~~~~~~i---~GIt~~~l~-~~~~~~~v~~~~~~~l~~~~~-~~~~~~lv~hn~~fD~~~~L~~~~~~~~~~~p~---- 134 (204)
T 1w0h_A 64 LSDFCISL---TGITQDQVD-RADTFPQVLKKVIDWMKLKEL-GTKYKYSLLTDGSWDMSKFLNIQCQLSRLKYPP---- 134 (204)
T ss_dssp CCHHHHHH---HCCCHHHHH-TSBCHHHHHHHHHHHHHHTTB-TTTBCEEEEESSTTTTHHHHHHHHHHHTCCCCG----
T ss_pred cCHHHHHH---hCCCHHHHh-CCCCHHHHHHHHHHHHHhcCC-CCCCcEEEEEECcchHHHHHHHHHHHhCCCCcc----
Confidence 55555544 787765553 4666544322 2222211 12233478888999997 8887663 344442
Q ss_pred HHHHHHhhCCccccchhhhHhhhcc---cCcHHHHHHHcCCccCCCCccchhhHHHHHHHHHHHHHHhc
Q 023991 186 FFNLIRIYFPTVYDIKHLMKFCNSL---HGGLNKLAELLEVERVGICHQAGSDSLLTASTFRKLKENFF 251 (274)
Q Consensus 186 F~~~l~~~FP~iyDtK~la~~~~~l---~~~L~~la~~L~~~r~~~~HqAGsDs~lT~~~F~~l~~~~~ 251 (274)
++...+||+.+++..-.. ..+|+.+++.+|++..|..|.|-.|+..|+++|.+|.+...
T Consensus 135 -------~~~~~~dt~~l~~~~~~~~~~~~~L~~l~~~~gi~~~~~~H~Al~Da~~ta~l~~~l~~~~~ 196 (204)
T 1w0h_A 135 -------FAKKWINIRKSYGNFYKVPRSQTKLTIMLEKLGMDYDGRPHCGLDDSKNIARIAVRMLQDGC 196 (204)
T ss_dssp -------GGSEEEEHHHHHHHHHTCCGGGCSHHHHHHHTTCCCCSCTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred -------cccceEEHHHHHHHHhCCCCccchHHHHHHHcCCCCCCCccCcHHHHHHHHHHHHHHHHCCC
Confidence 233678998887764222 35799999999999888889999999999999999988654
No 9
>2f96_A Ribonuclease T; RNAse, RNT, RNAse T, tRNA hydrolase, SAD, PS protein structure initiative, midwest center for structural genomics; 2.09A {Pseudomonas aeruginosa} SCOP: c.55.3.5
Probab=98.78 E-value=1.2e-07 Score=82.49 Aligned_cols=183 Identities=17% Similarity=0.208 Sum_probs=121.6
Q ss_pred HHHHhhcCCeeeEecccccccccCCCCCCCCHHHHHHHHHhcccccceeeeeeeeeec--CCCCCCCCCCCeeEEEeeec
Q 023991 27 IRKIVDDYPYVAMDTEFPGIALRPVGSFKSSYEYHYQTLKSNVDMLKLIQLGLTFSDE--NGNLPTCGTDKYCVWQFNFR 104 (274)
Q Consensus 27 I~~~i~~~~fIAiDtEf~Gl~~~~~~~~~~t~~~rY~~lr~nv~~~~iiQlGlt~~~~--~g~~p~~~~~~~~~w~FNF~ 104 (274)
+..-+++..||++|+|.||+... .-.|||||+..++. +|+. .....|+.+
T Consensus 22 ~~~~~~~~~~vviD~ETTGl~~~---------------------~~~IieIg~v~~~~~~~g~i-------~~~~~f~~l 73 (224)
T 2f96_A 22 MARRFRGYLPVVVDVETGGFNSA---------------------TDALLEIAATTVGMDEKGFL-------FPEHTYFFR 73 (224)
T ss_dssp HHHHTTTEEEEEEEEEESSSCTT---------------------TBCEEEEEEEEEEECTTSCE-------EEEEEEEEE
T ss_pred hhccccCCcEEEEEeeCCCCCCC---------------------CCeeEEEEEEEEEEcCCCcc-------cccceEEEE
Confidence 45567788999999999998421 12499999999984 5542 135667766
Q ss_pred ccCCCCCCCchhHHHHHHHcCCCccchhhcCCchhHHHHHHHH-h-cccc---cCCcceEEeccchhHHHHHHHhCCCCC
Q 023991 105 EFDVNEDIFANDSIELLKQSGINFTKNNEIGIDAMRFGEFMMS-S-GIVL---SDSMHWVTFHSGYDFGYLLKLLTCQNL 179 (274)
Q Consensus 105 ~F~~~~d~~~~~Si~fL~~~GfDFnk~~~~GI~~~~f~e~l~~-S-gl~~---~~~v~wvtf~g~yD~~yL~k~l~~~~L 179 (274)
.-|.....+.+.+.+. +|+.=....+.|.+...-.+.+.. - ..+. .+....|++++.||+.+|.+.+....+
T Consensus 74 V~P~~~~~i~~~~~~i---hGIt~e~~v~~~~~~~~v~~~~~~~l~~~~~~~~~~~~~lV~hn~~FD~~fL~~~~~~~g~ 150 (224)
T 2f96_A 74 IEPFEGANIEPAALEF---TGIKLDHPLRMAVQEEAALTEIFRGIRKALKANGCKRAILVGHNSSFDLGFLNAAVARTGI 150 (224)
T ss_dssp BCCCTTCBCCHHHHHH---HTCCTTCTTCCCBCHHHHHHHHHHHHHHHHHHTTCSEEEEEETTHHHHHHHHHHHHHHHTC
T ss_pred ECCCCCCCCCHHHHHH---hCCCHHHHHhcCCCHHHHHHHHHHHHHHHhhhcccCCCEEEEeChhhhHHHHHHHHHHcCC
Confidence 3332233456666555 798876677788887542222211 0 0110 123357888899999999877631112
Q ss_pred CCChHHHHHHHHhhC-C-ccccchhhhHhhhcccCcHHHHHHHcCCccCC-CCccchhhHHHHHHHHHHHHHHhc
Q 023991 180 PDTQVEFFNLIRIYF-P-TVYDIKHLMKFCNSLHGGLNKLAELLEVERVG-ICHQAGSDSLLTASTFRKLKENFF 251 (274)
Q Consensus 180 P~~~~~F~~~l~~~F-P-~iyDtK~la~~~~~l~~~L~~la~~L~~~r~~-~~HqAGsDs~lT~~~F~~l~~~~~ 251 (274)
+. .-| + .++||..+++..-. .-+|..+++.+|++..+ ..|.|-.|+..|+++|.+|.+.+.
T Consensus 151 ~~----------~p~~~~~~iDt~~l~~~~~~-~~~L~~l~~~~gi~~~~~~~H~Al~Da~~ta~l~~~l~~~~~ 214 (224)
T 2f96_A 151 KR----------NPFHPFSSFDTATLAGLAYG-QTVLAKACQAAGMEFDNREAHSARYDTEKTAELFCGIVNRWK 214 (224)
T ss_dssp CC----------CCEEEEEEEEHHHHHHHHHS-CCSHHHHHHHTTCCCCTTSCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred Cc----------CCccccceeeHHHHHHHHcC-CCCHHHHHHHcCCCcCCCCCCChHHHHHHHHHHHHHHHHHHH
Confidence 10 001 1 57899888776521 23799999999998754 789999999999999999988764
No 10
>2gui_A DNA polymerase III epsilon subunit; DNA polymerase proofreading domain, transferase; HET: DNA U5P; 1.60A {Escherichia coli} SCOP: c.55.3.5 PDB: 1j54_A* 1j53_A* 2ido_A* 2xy8_A*
Probab=98.70 E-value=2.5e-07 Score=78.54 Aligned_cols=172 Identities=16% Similarity=0.188 Sum_probs=107.7
Q ss_pred CCeeeEecccccccccCCCCCCCCHHHHHHHHHhcccccceeeeeeeeeecCCCCCCCCCCCeeEEEeeecccCCCCCCC
Q 023991 34 YPYVAMDTEFPGIALRPVGSFKSSYEYHYQTLKSNVDMLKLIQLGLTFSDENGNLPTCGTDKYCVWQFNFREFDVNEDIF 113 (274)
Q Consensus 34 ~~fIAiDtEf~Gl~~~~~~~~~~t~~~rY~~lr~nv~~~~iiQlGlt~~~~~g~~p~~~~~~~~~w~FNF~~F~~~~d~~ 113 (274)
.+||++|+|.||+.... . | -+.-.|||+|...++ +|+. ....|+.+ .+.. ...
T Consensus 9 ~~~vviD~ETTGl~~~~--~--------~------~~~~~Iieig~v~~~-~~~~--------~~~~f~~l-v~P~-~~i 61 (194)
T 2gui_A 9 TRQIVLDTETTGMNQIG--A--------H------YEGHKIIEIGAVEVV-NRRL--------TGNNFHVY-LKPD-RLV 61 (194)
T ss_dssp CEEEEEEEEESCCCSSS--S--------T------TTTCCEEEEEEEEEE-TTEE--------CSCCEEEE-CCCS-SCC
T ss_pred CCEEEEEeeCCCCCCcc--c--------C------CCCCEEEEEEEEEEE-CCeE--------eccEEEEE-ECcC-CcC
Confidence 47999999999985321 0 0 011359999999887 3432 11235554 3322 245
Q ss_pred chhHHHHHHHcCCCccchhhcCCchhHHHHHHHHhcccccCCcceEEeccchhHHHHHHHhC--CCCCCCChHHHHHHHH
Q 023991 114 ANDSIELLKQSGINFTKNNEIGIDAMRFGEFMMSSGIVLSDSMHWVTFHSGYDFGYLLKLLT--CQNLPDTQVEFFNLIR 191 (274)
Q Consensus 114 ~~~Si~fL~~~GfDFnk~~~~GI~~~~f~e~l~~Sgl~~~~~v~wvtf~g~yD~~yL~k~l~--~~~LP~~~~~F~~~l~ 191 (274)
.+.+.+. +|+.=+.+ ..+.+..+..+.+.. ++ . +-.+|++++.||+.+|.+.+. |.+.|. ..
T Consensus 62 ~~~~~~i---~GIt~~~l-~~~~~~~~v~~~~~~--~l-~-~~~lv~hn~~fD~~~L~~~~~~~g~~~p~-~~------- 125 (194)
T 2gui_A 62 DPEAFGV---HGIADEFL-LDKPTFAEVADEFMD--YI-R-GAELVIHNAAFDIGFMDYEFSLLKRDIPK-TN------- 125 (194)
T ss_dssp CHHHHHH---HCCCHHHH-TTSCCHHHHHHHHHH--HH-T-TSEEEETTHHHHHHHHHHHHHHTCSCCCC-GG-------
T ss_pred CHHHHHh---hCcCHHHH-hCCCCHHHHHHHHHH--HH-C-CCeEEEEchHHhHHHHHHHHHHcCCCCcc-cc-------
Confidence 5555444 67775544 344444432222221 11 1 235788999999999988763 445442 10
Q ss_pred hhCCccccchhhhHhh-hcccCcHHHHHHHcCCccCC-CCccchhhHHHHHHHHHHHHHH
Q 023991 192 IYFPTVYDIKHLMKFC-NSLHGGLNKLAELLEVERVG-ICHQAGSDSLLTASTFRKLKEN 249 (274)
Q Consensus 192 ~~FP~iyDtK~la~~~-~~l~~~L~~la~~L~~~r~~-~~HqAGsDs~lT~~~F~~l~~~ 249 (274)
.+..++||-.+++.. ++.+.+|+.+++.+|++..+ .+|.|-.|+..|+++|.+|.+.
T Consensus 126 -~~~~~iDt~~l~~~~~p~~~~~L~~l~~~~gi~~~~~~~H~Al~Da~~ta~l~~~l~~~ 184 (194)
T 2gui_A 126 -TFCKVTDSLAVARKMFPGKRNSLDALCARYEIDNSKRTLHGALLDAQILAEVYLAMTGG 184 (194)
T ss_dssp -GTSEEEEHHHHHHHHSTTSCCSHHHHHHHTTCCCTTCSSCCHHHHHHHHHHHHHHHTC-
T ss_pred -ccCceeeHHHHHHHHcCCCCCCHHHHHHHcCcCCCCCCCCChHHHHHHHHHHHHHHHhc
Confidence 013577876666554 23456899999999999877 5999999999999999998654
No 11
>2p1j_A POLIII, DNA polymerase III POLC-type; structural genomics, exonuclease, PSI-2, protein structure initiative; HET: DNA; 2.50A {Thermotoga maritima MSB8}
Probab=98.70 E-value=4e-07 Score=77.04 Aligned_cols=164 Identities=19% Similarity=0.198 Sum_probs=106.1
Q ss_pred hhcCCeeeEecccccccccCCCCCCCCHHHHHHHHHhcccccceeeeeeeeeecCCCCCCCCCCCeeEEEeeecccCCCC
Q 023991 31 VDDYPYVAMDTEFPGIALRPVGSFKSSYEYHYQTLKSNVDMLKLIQLGLTFSDENGNLPTCGTDKYCVWQFNFREFDVNE 110 (274)
Q Consensus 31 i~~~~fIAiDtEf~Gl~~~~~~~~~~t~~~rY~~lr~nv~~~~iiQlGlt~~~~~g~~p~~~~~~~~~w~FNF~~F~~~~ 110 (274)
+...+||++|+|.||+... .-.|||+|+..++ +|+ .+-.|+.+.-| ..
T Consensus 9 l~~~~~v~iD~ETTGl~~~---------------------~~~IieIg~v~~~-~g~---------i~~~f~~lv~P-~~ 56 (186)
T 2p1j_A 9 FGDATFVVLDFETTGLDPQ---------------------VDEIIEIGAVKIQ-GGQ---------IVDEYHTLIKP-SR 56 (186)
T ss_dssp ----CEEEEEEEESCSCTT---------------------TCCEEEEEEEEEE-TTE---------EEEEEEEECBC-SS
T ss_pred CcCCCEEEEEEECCCCCCC---------------------CCeEEEEEEEEEE-CCE---------EEEEEEEEECc-CC
Confidence 4567999999999998421 0149999999886 443 23456665222 22
Q ss_pred CCCchhHHHHHHHcCCCccchhhcCCchhHHHHHHHHhcccccCCcceEEeccchhHHHHHHHhC--CCCCCCChHHHHH
Q 023991 111 DIFANDSIELLKQSGINFTKNNEIGIDAMRFGEFMMSSGIVLSDSMHWVTFHSGYDFGYLLKLLT--CQNLPDTQVEFFN 188 (274)
Q Consensus 111 d~~~~~Si~fL~~~GfDFnk~~~~GI~~~~f~e~l~~Sgl~~~~~v~wvtf~g~yD~~yL~k~l~--~~~LP~~~~~F~~ 188 (274)
..++.+.+. +|+.-..+ ..+.+..+..+.+.. .+ ++-..|++++.+|+.+|.+.+. |.+.|.
T Consensus 57 -~i~~~~~~i---~GIt~~~l-~~~~~~~~v~~~~~~--~l--~~~~lv~hn~~fD~~~L~~~~~~~g~~~~~------- 120 (186)
T 2p1j_A 57 -EISRKSSEI---TGITQEML-ENKRSIEEVLPEFLG--FL--EDSIIVAHNANFDYRFLRLWIKKVMGLDWE------- 120 (186)
T ss_dssp -CCCHHHHHH---HCCCHHHH-TTCCBHHHHHHHHHH--HS--SSCEEEETTHHHHHHHHHHHHHHHHCCCCC-------
T ss_pred -CCCHHHhhh---cCCCHHHH-hcCCCHHHHHHHHHH--HH--CCCEEEEECcHHHHHHHHHHHHHcCCCCCC-------
Confidence 344444433 77765443 345555543333322 12 1336888999999999887663 333321
Q ss_pred HHHhhCCccccchhhhHhhhcc-cCcHHHHHHHcCCccCCCCccchhhHHHHHHHHHHHHHH
Q 023991 189 LIRIYFPTVYDIKHLMKFCNSL-HGGLNKLAELLEVERVGICHQAGSDSLLTASTFRKLKEN 249 (274)
Q Consensus 189 ~l~~~FP~iyDtK~la~~~~~l-~~~L~~la~~L~~~r~~~~HqAGsDs~lT~~~F~~l~~~ 249 (274)
..++||..+++...+. +-+|+.+++.+|++..+ .|.|-.|+..|+.+|.+|.+.
T Consensus 121 ------~~~iDt~~l~~~~~~~~~~~L~~l~~~~gi~~~~-~H~Al~Da~~t~~l~~~l~~~ 175 (186)
T 2p1j_A 121 ------RPYIDTLALAKSLLKLRSYSLDSVVEKLGLGPFR-HHRALDDARVTAQVFLRFVEM 175 (186)
T ss_dssp ------CCEEEHHHHHHHHTCCSCCSHHHHHHHTTCCSTT-CCHHHHHHHHHHHHHHHHTTC
T ss_pred ------CCEEeHHHHHHHHhhcCCCCHHHHHHHcCCCCCC-CcCHHHHHHHHHHHHHHHHHH
Confidence 2577988777765322 45899999999998765 699999999999999998654
No 12
>1zbh_A 3'-5' exonuclease ERI1; histone mRNA 3'-END-specific recognition, structures of 3'- exonuclease and ITS RNA complex, hydrolase/RNA complex; HET: AMP; 3.00A {Homo sapiens}
Probab=98.65 E-value=7.7e-07 Score=81.11 Aligned_cols=175 Identities=12% Similarity=0.031 Sum_probs=116.2
Q ss_pred CCeeeEecccccccccCCCCCCCCHHHHHHHHHhcccccceeeeeeeeeec-CCCCCCCCCCCeeEEEeeecccCCCC-C
Q 023991 34 YPYVAMDTEFPGIALRPVGSFKSSYEYHYQTLKSNVDMLKLIQLGLTFSDE-NGNLPTCGTDKYCVWQFNFREFDVNE-D 111 (274)
Q Consensus 34 ~~fIAiDtEf~Gl~~~~~~~~~~t~~~rY~~lr~nv~~~~iiQlGlt~~~~-~g~~p~~~~~~~~~w~FNF~~F~~~~-d 111 (274)
-.||++|+|.||+...+ +...-.|||||+..++. +|+ .+..|+.+ .+... .
T Consensus 78 ~~~vviD~ETTGl~~~~-----------------~~~~~~IIeIgaV~v~~~~g~---------i~~~f~~l-V~P~~~~ 130 (299)
T 1zbh_A 78 DYICIIDFEATCEEGNP-----------------PEFVHEIIEFPVVLLNTHTLE---------IEDTFQQY-VRPEINT 130 (299)
T ss_dssp SEEEEECCEECCCTTCC-----------------TTCCCCEEEEEEEEEETTTCC---------EEEEEEEE-BCCSSSC
T ss_pred ceEEEEEeecccCCCCC-----------------CCCCCceEEEEEEEEECCCCe---------Eeeeeeee-ecCCCCC
Confidence 36899999999985321 01123599999999986 344 34567766 33333 2
Q ss_pred CCchhHHHHHHHcCCCccchhhcCCchhHHH----HHHHHhcccccCCcceEEeccchhHH-HHHHHh--CCCCCCCChH
Q 023991 112 IFANDSIELLKQSGINFTKNNEIGIDAMRFG----EFMMSSGIVLSDSMHWVTFHSGYDFG-YLLKLL--TCQNLPDTQV 184 (274)
Q Consensus 112 ~~~~~Si~fL~~~GfDFnk~~~~GI~~~~f~----e~l~~Sgl~~~~~v~wvtf~g~yD~~-yL~k~l--~~~~LP~~~~ 184 (274)
...+.+.+. +|+.=..+. .|.+..+.. +.+-..++- .+....|++++.+|+. +|-+.+ .+.++|.
T Consensus 131 ~i~~~~~~i---hGIt~e~v~-~ap~~~evl~~f~~~l~~~~~~-~~~~~lVahn~~fD~~~fL~~~~~~~g~~~p~--- 202 (299)
T 1zbh_A 131 QLSDFCISL---TGITQDQVD-RADTFPQVLKKVIDLMKLKELG-TKYKYSLLTDGSWDMSKFLNIQCQLSRLKYPP--- 202 (299)
T ss_dssp SCCHHHHHH---HCCCHHHHH-TSBCHHHHHHHHHHHHHHTTBT-TTBCEEEEESSSHHHHTHHHHHHHHTTBCCCG---
T ss_pred CCCHHHHHH---hCCCHHHHh-cCCCHHHHHHHHHHHHhhcccC-CCCcEEEEEeCHHHHHHHHHHHHHHcCCCCCc---
Confidence 455666554 677755543 466655432 233222211 1124678899999999 988765 3445552
Q ss_pred HHHHHHHhhCCccccchhhhHhhhccc---CcHHHHHHHcCCccCCCCccchhhHHHHHHHHHHHHHHhc
Q 023991 185 EFFNLIRIYFPTVYDIKHLMKFCNSLH---GGLNKLAELLEVERVGICHQAGSDSLLTASTFRKLKENFF 251 (274)
Q Consensus 185 ~F~~~l~~~FP~iyDtK~la~~~~~l~---~~L~~la~~L~~~r~~~~HqAGsDs~lT~~~F~~l~~~~~ 251 (274)
++..++|++.+.....++. -+|..+++.+|++..|.+|.|-.||..|+++|.+|.+...
T Consensus 203 --------~~~~~iDt~~l~~~~~~~~~~~~~L~~l~~~~gi~~~g~~H~Al~DA~ata~l~~~l~~~~~ 264 (299)
T 1zbh_A 203 --------FAKKWINIRKSYGNFYKVPRSQTKLTIMLEKLGMDYDGRPNCGLDDSKNIARIAVRMLQDGC 264 (299)
T ss_dssp --------GGSEEEEHHHHHHHHHTCCGGGCSHHHHHHHTTCCCCSCTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred --------ccchHHHHHHHHHHHhCCCCCCccHHHHHHHcCCCCCCCCCChHHHHHHHHHHHHHHHHhCC
Confidence 2235778877665542222 4899999999999888899999999999999999988754
No 13
>2xri_A ERI1 exoribonuclease 3; hydrolase, metal binding; 2.15A {Homo sapiens}
Probab=98.60 E-value=1.9e-06 Score=75.07 Aligned_cols=171 Identities=16% Similarity=0.162 Sum_probs=110.0
Q ss_pred CeeeEecccccccccCCCCCCCCHHHHHHHHHhcccccceeeeeeeeeecC-CCCCCCCCCCeeEEEeeecccCCCC-CC
Q 023991 35 PYVAMDTEFPGIALRPVGSFKSSYEYHYQTLKSNVDMLKLIQLGLTFSDEN-GNLPTCGTDKYCVWQFNFREFDVNE-DI 112 (274)
Q Consensus 35 ~fIAiDtEf~Gl~~~~~~~~~~t~~~rY~~lr~nv~~~~iiQlGlt~~~~~-g~~p~~~~~~~~~w~FNF~~F~~~~-d~ 112 (274)
.||++|+|.||+.... +.-.|||+|....+.+ |+ ....|+.+ .+... ..
T Consensus 32 ~~vviD~ETTGl~~~~-------------------d~~~IieIgav~v~~~~~~---------i~~~f~~l-V~P~~~~~ 82 (224)
T 2xri_A 32 YFLVLDFEATCDKPQI-------------------HPQEIIEFPILKLNGRTME---------IESTFHMY-VQPVVHPQ 82 (224)
T ss_dssp EEEEECCEECCCC-CC-------------------SSCCEEEEEEEEEETTTCC---------EEEEEEEE-CCCSSSCS
T ss_pred eEEEEEEEcCCCCCCC-------------------CCcceEEEEEEEEecCCcE---------EeeeeeeE-ECCCCCCc
Confidence 5999999999984320 1125999999998854 33 34567766 33333 24
Q ss_pred CchhHHHHHHHcCCCccchhhcCCchhH----HHHHHHHhcccc-cCCcceEEeccchhHHHHH-HHh--CCCCCCCChH
Q 023991 113 FANDSIELLKQSGINFTKNNEIGIDAMR----FGEFMMSSGIVL-SDSMHWVTFHSGYDFGYLL-KLL--TCQNLPDTQV 184 (274)
Q Consensus 113 ~~~~Si~fL~~~GfDFnk~~~~GI~~~~----f~e~l~~Sgl~~-~~~v~wvtf~g~yD~~yL~-k~l--~~~~LP~~~~ 184 (274)
.++.+.+. +|+.=..+ ..|.+..+ |.+.+-...++- |....|++. |.+|+.+|+ +.+ .|-++|.
T Consensus 83 i~~~~~~l---tGIt~~~v-~~a~~~~~v~~~f~~~l~~~~lv~hn~~~~~~t~-g~fD~~fll~~~~~~~g~~~p~--- 154 (224)
T 2xri_A 83 LTPFCTEL---TGIIQAMV-DGQPSLQQVLERVDEWMAKEGLLDPNVKSIFVTC-GDWDLKVMLPGQCQYLGLPVAD--- 154 (224)
T ss_dssp CCHHHHHH---HCCCHHHH-TTCCCHHHHHHHHHHHHHHTTTTSTTSCEEEEES-SSHHHHTHHHHHHHHHTCCCCG---
T ss_pred CCHHHHHH---hCcCHHHH-cCCCCHHHHHHHHHHHHhhcccccCCCceEEEEe-ChhhHHHHHHHHHHHhCCCCcc---
Confidence 55555554 78775543 45666654 333343343443 224567777 599999865 333 2445552
Q ss_pred HHHHHHHhhCCccccchhhhHhhhcc--cCcHHHHHHHcCCccCCCCccchhhHHHHHHHHHHHHHHh
Q 023991 185 EFFNLIRIYFPTVYDIKHLMKFCNSL--HGGLNKLAELLEVERVGICHQAGSDSLLTASTFRKLKENF 250 (274)
Q Consensus 185 ~F~~~l~~~FP~iyDtK~la~~~~~l--~~~L~~la~~L~~~r~~~~HqAGsDs~lT~~~F~~l~~~~ 250 (274)
+|...+|++...+....+ .-+|..+++.+|++..|.+|.|-.|+..|+++|.+|.+..
T Consensus 155 --------~~~~~iD~~~~~~~~~~~~p~~~L~~l~~~~gi~~~~~~H~Al~DA~~ta~l~~~l~~~g 214 (224)
T 2xri_A 155 --------YFKQWINLKKAYSFAMGCWPKNGLLDMNKGLSLQHIGRPHSGIDDCKNIANIMKTLAYRG 214 (224)
T ss_dssp --------GGSCEEEHHHHHHHHHTSCCTTTHHHHHHHTTCCCCSCTTCHHHHHHHHHHHHHHHHHTT
T ss_pred --------cccceEeHHHHHHHHhccCCCCCHHHHHHHcCCCCCCCCcChHHHHHHHHHHHHHHHHcC
Confidence 123566755433332222 2489999999999988889999999999999999998753
No 14
>3cg7_A CRN-4, cell death-related nuclease 4; hydrolase, apoptosis, 3'-5' exonuclease, deddh; 2.50A {Caenorhabditis elegans} PDB: 3cm5_A 3cm6_A
Probab=98.54 E-value=2.1e-06 Score=78.74 Aligned_cols=174 Identities=16% Similarity=0.234 Sum_probs=113.9
Q ss_pred CeeeEecccccccccCCCCCCCCHHHHHHHHHhcccccceeeeeeeeeec-CCCCCCCCCCCeeEEEeeecccCCCCC-C
Q 023991 35 PYVAMDTEFPGIALRPVGSFKSSYEYHYQTLKSNVDMLKLIQLGLTFSDE-NGNLPTCGTDKYCVWQFNFREFDVNED-I 112 (274)
Q Consensus 35 ~fIAiDtEf~Gl~~~~~~~~~~t~~~rY~~lr~nv~~~~iiQlGlt~~~~-~g~~p~~~~~~~~~w~FNF~~F~~~~d-~ 112 (274)
.||++|+|.||+.... + | .-.|||+|...++. +|+. .....|+-+ .+.... .
T Consensus 20 ~~vviD~ETTGl~~~~-----d-----~--------~~eIIEIgaV~vd~~~g~i-------~~~~~f~~l-V~P~~~p~ 73 (308)
T 3cg7_A 20 TLLILDFETTSDAANQ-----D-----Y--------PCEVIQFAIVAYDVPNDKI-------REDISFNKY-VKPVLNRT 73 (308)
T ss_dssp EEEEEEEEECCBTTBC-----S-----C--------CCCEEEEEEEEEETTTTEE-------EEEEEEEEE-CBCSSBCS
T ss_pred eEEEEEeecCCCCCCC-----C-----C--------CCCeEEEEEEEEEcCCCEE-------eeccceeeE-ECCCCCCC
Confidence 5899999999985321 1 0 13599999999985 4542 111257666 333332 2
Q ss_pred CchhHHHHHHHcCCCccchhhcCCchhH----HHHHHHHhcccccCCcceEEeccchhH-HHHHHHh--CCCCCCCChHH
Q 023991 113 FANDSIELLKQSGINFTKNNEIGIDAMR----FGEFMMSSGIVLSDSMHWVTFHSGYDF-GYLLKLL--TCQNLPDTQVE 185 (274)
Q Consensus 113 ~~~~Si~fL~~~GfDFnk~~~~GI~~~~----f~e~l~~Sgl~~~~~v~wvtf~g~yD~-~yL~k~l--~~~~LP~~~~~ 185 (274)
..+.+.+. +||.=..+. .|.+..+ |.+.+-...++ ..++.|++. |.+|+ .+|-+.+ .+-++|.
T Consensus 74 i~~~~~~l---tGIt~e~v~-~ap~~~evl~~f~~~l~~~~lv-ahn~~lv~~-g~fD~~~fL~~~~~~~g~~~p~---- 143 (308)
T 3cg7_A 74 LTKNCVDF---TGIPQRSID-TADTFDVVYEQFQQWLITLGLE-EGKFAFVCD-SRQDLWRIAQYQMKLSNIQMPA---- 143 (308)
T ss_dssp CCHHHHHH---HCCCHHHHH-TSCBHHHHHHHHHHHHHHHCCC-TTSEEEEES-SSHHHHTHHHHHHHHTTCCCCG----
T ss_pred CCHHHHHH---cCCCHHHHh-cCCCHHHHHHHHHHHHHhCCcC-CcceEEecc-CcccHHHHHHHHHHHcCCCCch----
Confidence 55555543 777755543 4666654 33334334333 345566664 78999 6876655 3455553
Q ss_pred HHHHHHhhCCccccchhhhHhh-hcc-------cCcHHHHHHHcCCccCCCCccchhhHHHHHHHHHHHHHHhc
Q 023991 186 FFNLIRIYFPTVYDIKHLMKFC-NSL-------HGGLNKLAELLEVERVGICHQAGSDSLLTASTFRKLKENFF 251 (274)
Q Consensus 186 F~~~l~~~FP~iyDtK~la~~~-~~l-------~~~L~~la~~L~~~r~~~~HqAGsDs~lT~~~F~~l~~~~~ 251 (274)
+|...+||+.+++.. +.. +-+|..+++.+|++..+..|.|-.|+..|+++|.+|.+...
T Consensus 144 -------~~~~~iDt~~l~~~~~~~~~~~~~~~~~~L~~l~~~~gi~~~~~~HrAl~DA~ata~l~~~l~~~~~ 210 (308)
T 3cg7_A 144 -------FFRQYINLYKIFTNEMDRMGPKELSATTNIGKMNEYYDLPTIGRAHDAMDDCLNIATILQRMINMGA 210 (308)
T ss_dssp -------GGSEEEEHHHHHHHHHHHHCCCCCCCCSHHHHHHHHTTCCCCSCTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred -------hhcceeeHHHHHHHHhccccccccccCcCHHHHHHHcCCCCCCCCcCHHHHHHHHHHHHHHHHHcCC
Confidence 233567988777654 222 23799999999999888889999999999999999987643
No 15
>3mxm_B Three prime repair exonuclease 1; RNAse H-like fold, polyproline type II helix, hydrolase-DNA; HET: DNA; 1.75A {Mus musculus} SCOP: c.55.3.5 PDB: 3mxj_B 2ioc_B 3mxi_B* 3b6o_A* 2o4g_A* 3b6p_A* 2o4i_A 2oa8_A
Probab=98.52 E-value=1.2e-06 Score=77.57 Aligned_cols=178 Identities=14% Similarity=0.108 Sum_probs=114.0
Q ss_pred CeeeEecccccccccCCCCCCCCHHHHHHHHHhcccccceeeeeeeeeecCC---------CCCCCCCCCeeEEEeeecc
Q 023991 35 PYVAMDTEFPGIALRPVGSFKSSYEYHYQTLKSNVDMLKLIQLGLTFSDENG---------NLPTCGTDKYCVWQFNFRE 105 (274)
Q Consensus 35 ~fIAiDtEf~Gl~~~~~~~~~~t~~~rY~~lr~nv~~~~iiQlGlt~~~~~g---------~~p~~~~~~~~~w~FNF~~ 105 (274)
.||++|+|.||+.... =.|||+|+...+.++ .....+.....+..|+..
T Consensus 13 ~~vv~D~ETTGl~~~~---------------------d~IiEIgav~v~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~l- 70 (242)
T 3mxm_B 13 TLIFLDLEATGLPSSR---------------------PEVTELCLLAVHRRALENTSISQGHPPPVPRPPRVVDKLSLC- 70 (242)
T ss_dssp EEEEEEEEESSCGGGC---------------------CCEEEEEEEEEEHHHHHTSCCCCSSSCCCCCCCSCCEEEEEE-
T ss_pred eEEEEEeecCCCCCCC---------------------CeeEEEEEEEecCCcccccccccccccccccccchhheeEEE-
Confidence 5999999999995321 249999999887542 100001111244567665
Q ss_pred cCCCCCCCchhHHHHHHHcCCCccchhhcCC-chh-HHHHHHHH--hcccccCCcceEEecc-chhHHHHHHHhCCCCCC
Q 023991 106 FDVNEDIFANDSIELLKQSGINFTKNNEIGI-DAM-RFGEFMMS--SGIVLSDSMHWVTFHS-GYDFGYLLKLLTCQNLP 180 (274)
Q Consensus 106 F~~~~d~~~~~Si~fL~~~GfDFnk~~~~GI-~~~-~f~e~l~~--Sgl~~~~~v~wvtf~g-~yD~~yL~k~l~~~~LP 180 (274)
.+.. ..+.+.+.+ -+|+.=..+...|+ +.. +..+.+.. .+. .+...+|++++ .||+.+|-+.+....+|
T Consensus 71 i~P~-~~i~~~~~~---i~GIt~~~l~~~g~p~~~~ev~~~~~~fl~~~--~~~~~lVaHNav~FD~~fL~~~~~r~g~~ 144 (242)
T 3mxm_B 71 IAPG-KACSPGASE---ITGLSKAELEVQGRQRFDDNLAILLRAFLQRQ--PQPCCLVAHNGDRYDFPLLQTELARLSTP 144 (242)
T ss_dssp CCCS-SCCCHHHHH---HHCCCHHHHHHTTCCCSCHHHHHHHHHHHHTS--CSSEEEEETTTTTTHHHHHHHHHHTSSSC
T ss_pred ECCC-CCCCHHHHH---hcCCCHHHHHhcCCCchhHHHHHHHHHHHhcC--CCCCEEEEcCChHhhHHHHHHHHHHcCCC
Confidence 4433 345666654 48999888888886 343 33333322 111 12246889998 99999999888432222
Q ss_pred CChHHHHHHHHhhCC-ccccchhhhHhhh-c--------c-cCcHHHHHHH-cCCccCCCCccchhhHHHHHHHHHHHHH
Q 023991 181 DTQVEFFNLIRIYFP-TVYDIKHLMKFCN-S--------L-HGGLNKLAEL-LEVERVGICHQAGSDSLLTASTFRKLKE 248 (274)
Q Consensus 181 ~~~~~F~~~l~~~FP-~iyDtK~la~~~~-~--------l-~~~L~~la~~-L~~~r~~~~HqAGsDs~lT~~~F~~l~~ 248 (274)
.. .-+ ..+||-.+++.+. . + +-+|+.|++. +|++..+ +|.|-+|+..|+++|.++.+
T Consensus 145 ~~----------~~~~~~iDtl~l~r~l~~~~~p~~~~~~~~~~L~~l~~~~~gi~~~~-~H~Al~Da~ata~l~~~~~~ 213 (242)
T 3mxm_B 145 SP----------LDGTFCVDSIAALKALEQASSPSGNGSRKSYSLGSIYTRLYWQAPTD-SHTAEGDDLTLLSICQWKPQ 213 (242)
T ss_dssp CT----------TTTCEEEEHHHHHHHHHHHHCC------CCCSHHHHHHHHHSSCCSS-TTSHHHHHHHHHHHHTSSHH
T ss_pred CC----------ccCCeEeehHHHHHHHHhhcCccccCCCCCcCHHHHHHHHhCCCCCC-CcChHHHHHHHHHHHHHHHH
Confidence 11 001 3567776666431 1 1 2389999977 9998654 79999999999999999988
Q ss_pred Hhc
Q 023991 249 NFF 251 (274)
Q Consensus 249 ~~~ 251 (274)
.+.
T Consensus 214 ~~~ 216 (242)
T 3mxm_B 214 ALL 216 (242)
T ss_dssp HHH
T ss_pred HHH
Confidence 876
No 16
>1zbu_A ERI-1 homolog, 3'-5' exonuclease ERI1; hydrolase; HET: AMP; 3.00A {Homo sapiens}
Probab=98.48 E-value=1.7e-06 Score=80.86 Aligned_cols=176 Identities=13% Similarity=0.029 Sum_probs=114.4
Q ss_pred CCeeeEecccccccccCCCCCCCCHHHHHHHHHhcccccceeeeeeeeeec-CCCCCCCCCCCeeEEEeeecccCCCCCC
Q 023991 34 YPYVAMDTEFPGIALRPVGSFKSSYEYHYQTLKSNVDMLKLIQLGLTFSDE-NGNLPTCGTDKYCVWQFNFREFDVNEDI 112 (274)
Q Consensus 34 ~~fIAiDtEf~Gl~~~~~~~~~~t~~~rY~~lr~nv~~~~iiQlGlt~~~~-~g~~p~~~~~~~~~w~FNF~~F~~~~d~ 112 (274)
-.||+||+|.||+...+ +...-.|||||+..++. +|+ .+..|+.+.-|.....
T Consensus 128 ~~~vviD~ETTGl~~~~-----------------~~~~deIIEIgaV~vd~~~g~---------i~~~f~~lVkP~~~~~ 181 (349)
T 1zbu_A 128 DYICIIDFEATCEEGNP-----------------PEFVHEIIEFPVVLLNTHTLE---------IEDTFQQYVRPEINTQ 181 (349)
T ss_dssp SEEEECCCEECCCTTCC-----------------TTCCCCEEECCEEEEETTTTE---------EEEEECCBEECSSSCS
T ss_pred CeEEEEEEecCCCCCcC-----------------CCCCCeEEEEEEEEEECCCce---------EeEEEEEEECCCCCCC
Confidence 37899999999985321 01123599999999985 343 3456766633322124
Q ss_pred CchhHHHHHHHcCCCccchhhcCCchhHH----HHHHHHhcccccCCcceEEeccchhHH-HHHHHh--CCCCCCCChHH
Q 023991 113 FANDSIELLKQSGINFTKNNEIGIDAMRF----GEFMMSSGIVLSDSMHWVTFHSGYDFG-YLLKLL--TCQNLPDTQVE 185 (274)
Q Consensus 113 ~~~~Si~fL~~~GfDFnk~~~~GI~~~~f----~e~l~~Sgl~~~~~v~wvtf~g~yD~~-yL~k~l--~~~~LP~~~~~ 185 (274)
+.+.+.+. +||.=..+. .|.+..+. .+.+-...+- .+....|++++.||+. +|-+.+ .+.++|.
T Consensus 182 I~~~~t~i---hGIT~e~v~-~ap~~~eVl~~f~~~l~~~~~~-~~~~~lVaHNa~FD~~~fL~~~~~~~g~~~p~---- 252 (349)
T 1zbu_A 182 LSDFCISL---TGITQDQVD-RADTFPQVLKKVIDLMKLKELG-TKYKYSLLTDGSWDMSKFLNIQCQLSRLKYPP---- 252 (349)
T ss_dssp CCHHHHHH---HCCCHHHHH-TSEEHHHHHHHHHHHHHHTTBT-TTBCEEEEESSSHHHHTHHHHHHHHTTBCCCG----
T ss_pred CCHHHHHH---hCCCHHHHh-CCCCHHHHHHHHHHHHhccccc-CCCcEEEEECcHhhHHHHHHHHHHHhCCCCcc----
Confidence 55666554 677655543 45555432 2222222111 1124678899999999 987765 3445552
Q ss_pred HHHHHHhhCCccccchhhhHhhhccc---CcHHHHHHHcCCccCCCCccchhhHHHHHHHHHHHHHHhc
Q 023991 186 FFNLIRIYFPTVYDIKHLMKFCNSLH---GGLNKLAELLEVERVGICHQAGSDSLLTASTFRKLKENFF 251 (274)
Q Consensus 186 F~~~l~~~FP~iyDtK~la~~~~~l~---~~L~~la~~L~~~r~~~~HqAGsDs~lT~~~F~~l~~~~~ 251 (274)
++-.+.|++.+......+. -+|..+++.+|++..|.+|.|-.|+..|+.+|.+|.+...
T Consensus 253 -------~~~~~iDt~~l~~~~~~~~~~~~~L~~l~~~~gi~~~g~~HrAl~DA~ata~ll~~ll~~~~ 314 (349)
T 1zbu_A 253 -------FAKKWINIRKSYGNFYKVPRSQTKLTIMLEKLGMDYDGRPHCGLDDSKNIARIAVRMLQDGC 314 (349)
T ss_dssp -------GGSEEEEHHHHHHHHHTCCGGGGSHHHHHHHTTCCCCSCTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred -------ccchHHHHHHHHHHHhcCCCCCCCHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHHHHHHhcc
Confidence 1235778887765542232 4899999999999888899999999999999999988754
No 17
>1y97_A Three prime repair exonuclease 2; TREX2, hydrolase; 2.50A {Homo sapiens} SCOP: c.55.3.5
Probab=98.46 E-value=2e-06 Score=75.17 Aligned_cols=178 Identities=15% Similarity=0.121 Sum_probs=108.3
Q ss_pred CCeeeEecccccccccCCCCCCCCHHHHHHHHHhcccccceeeeeeeeeecCCC-CCCC-----CCCCeeEEEeeecccC
Q 023991 34 YPYVAMDTEFPGIALRPVGSFKSSYEYHYQTLKSNVDMLKLIQLGLTFSDENGN-LPTC-----GTDKYCVWQFNFREFD 107 (274)
Q Consensus 34 ~~fIAiDtEf~Gl~~~~~~~~~~t~~~rY~~lr~nv~~~~iiQlGlt~~~~~g~-~p~~-----~~~~~~~w~FNF~~F~ 107 (274)
.+||.+|+|.||+... .-.|||+|+..++.++. .+.. ....-....|+.+ .+
T Consensus 10 ~~~v~iD~ETTGl~~~---------------------~~~IieIg~v~~~~~~~~~~~~~~~~~~~~~~i~~~f~~l-v~ 67 (238)
T 1y97_A 10 ETFVFLDLEATGLPSV---------------------EPEIAELSLFAVHRSSLENPEHDESGALVLPRVLDKLTLC-MC 67 (238)
T ss_dssp SEEEEEEEEESSCGGG---------------------CCCEEEEEEEEEEHHHHTSCBC---CCCBCCSSCEEEEEE-CC
T ss_pred CeEEEEEeeCCCcCCC---------------------CCcEEEEEEEEecccccccccccccccccccccceeeEEE-EC
Confidence 4799999999998521 12499999999885410 0000 0000123456665 33
Q ss_pred CCCCCCchhHHHHHHHcCCCccchhhcCCchh--HHHHHHHHh-cccccCCcceEEecc-chhHHHHHHHhC--CCCCCC
Q 023991 108 VNEDIFANDSIELLKQSGINFTKNNEIGIDAM--RFGEFMMSS-GIVLSDSMHWVTFHS-GYDFGYLLKLLT--CQNLPD 181 (274)
Q Consensus 108 ~~~d~~~~~Si~fL~~~GfDFnk~~~~GI~~~--~f~e~l~~S-gl~~~~~v~wvtf~g-~yD~~yL~k~l~--~~~LP~ 181 (274)
... ...+.+.+ -+|+.=..+...|.+.. +..+.+..- +- ..+...+|++++ .||+.+|.+.+. +.++|.
T Consensus 68 P~~-~i~~~~~~---i~GIt~~~l~~~~~p~f~~~v~~~l~~fl~~-~~~~~~lVahN~~~FD~~fL~~~~~~~g~~~~~ 142 (238)
T 1y97_A 68 PER-PFTAKASE---ITGLSSEGLARCRKAGFDGAVVRTLQAFLSR-QAGPICLVAHNGFDYDFPLLCAELRRLGARLPR 142 (238)
T ss_dssp CSS-CCCHHHHH---HHCCCHHHHHHTTCCCSCHHHHHHHHHHHTT-SCSSEEEEETTTTTTHHHHHHHHHHHHTCCCCT
T ss_pred CCC-cCCHHHHH---HhCCCHHHHhhcCCCccHHHHHHHHHHHHHh-CCCCCEEEecCchhhhHHHHHHHHHHcCCCCCC
Confidence 333 45555544 37888777665666542 222222210 00 112256889999 999999988763 444442
Q ss_pred ChHHHHHHHHhhCCccccchhhhHhhh----------cc-cCcHHHHHH-HcCCccCCCCccchhhHHHHHHHHHHHHHH
Q 023991 182 TQVEFFNLIRIYFPTVYDIKHLMKFCN----------SL-HGGLNKLAE-LLEVERVGICHQAGSDSLLTASTFRKLKEN 249 (274)
Q Consensus 182 ~~~~F~~~l~~~FP~iyDtK~la~~~~----------~l-~~~L~~la~-~L~~~r~~~~HqAGsDs~lT~~~F~~l~~~ 249 (274)
. ..++||-.+++... .+ +-+|+.+++ .+|++.. ..|.|-.|+..|+++|.+|.+.
T Consensus 143 ~------------~~~iDt~~l~~~~~~~~~p~~~~p~~~~~~L~~l~~~~~gi~~~-~~H~Al~Da~~ta~l~~~l~~~ 209 (238)
T 1y97_A 143 D------------TVCLDTLPALRGLDRAHSHGTRARGRQGYSLGSLFHRYFRAEPS-AAHSAEGDVHTLLLIFLHRAAE 209 (238)
T ss_dssp T------------CEEEEHHHHHHHHHHHC----------CCSHHHHHHHHHSSCCC----CHHHHHHHHHHHHHHTHHH
T ss_pred C------------CEEEEHHHHHHHHHhccCccccCCCCCCCCHHHHHHHHhCCCCc-cCccHHHHHHHHHHHHHHHHHH
Confidence 1 14678776766652 22 348999999 4998754 4799999999999999998887
Q ss_pred hc
Q 023991 250 FF 251 (274)
Q Consensus 250 ~~ 251 (274)
+.
T Consensus 210 ~~ 211 (238)
T 1y97_A 210 LL 211 (238)
T ss_dssp HH
T ss_pred HH
Confidence 65
No 18
>3u3y_B Three prime repair exonuclease 1; RNAse H fold, 3' exonuclease, homodimer, hydrolase-DNA compl; HET: BU1; 2.28A {Mus musculus} PDB: 3u6f_B*
Probab=98.35 E-value=6.6e-06 Score=75.81 Aligned_cols=177 Identities=14% Similarity=0.097 Sum_probs=112.4
Q ss_pred CeeeEecccccccccCCCCCCCCHHHHHHHHHhcccccceeeeeeeeeecCCC---------CCCCCCCCeeEEEeeecc
Q 023991 35 PYVAMDTEFPGIALRPVGSFKSSYEYHYQTLKSNVDMLKLIQLGLTFSDENGN---------LPTCGTDKYCVWQFNFRE 105 (274)
Q Consensus 35 ~fIAiDtEf~Gl~~~~~~~~~~t~~~rY~~lr~nv~~~~iiQlGlt~~~~~g~---------~p~~~~~~~~~w~FNF~~ 105 (274)
.||.+|+|-||+.... =.|||||+..++.++. ....+.....+..|+..
T Consensus 13 tfVv~DlETTGL~~~~---------------------d~IIEIgaV~v~~~~l~~~~~~~g~~~~~~~~~~v~~~~~~l- 70 (314)
T 3u3y_B 13 TLIFLDLEATGLPSSR---------------------PEVTELCLLAVHRRALENTSISQGHPPPVPRPPRVVDKLSLC- 70 (314)
T ss_dssp EEEEEEEEESSCGGGC---------------------CCEEEEEEEEEEHHHHHC--CCCSSSCCCCCCCSSCEEEEEE-
T ss_pred CEEEEEEECCCCCCCC---------------------CeEEEEEEEEEECCccccccccccccccccccceeeeeEEEE-
Confidence 5999999999995321 2399999998875421 00001011244667765
Q ss_pred cCCCCCCCchhHHHHHHHcCCCccchhhcCCc-h-hHHHHHHHH--hcccccCCcceEEecc-chhHHHHHHHhC--CCC
Q 023991 106 FDVNEDIFANDSIELLKQSGINFTKNNEIGID-A-MRFGEFMMS--SGIVLSDSMHWVTFHS-GYDFGYLLKLLT--CQN 178 (274)
Q Consensus 106 F~~~~d~~~~~Si~fL~~~GfDFnk~~~~GI~-~-~~f~e~l~~--Sgl~~~~~v~wvtf~g-~yD~~yL~k~l~--~~~ 178 (274)
.+.. ..+.+.+.+. |||.=+.+...|++ . .+..+.+.. .+. .+...+|+|+| .||+.||-+.+. |.+
T Consensus 71 I~P~-~~I~~~a~~I---hGIT~e~l~~aG~P~f~~ev~~~l~~fL~~~--~~~~vLVAHNga~FD~~FL~~el~r~Gl~ 144 (314)
T 3u3y_B 71 IAPG-KACSPGASEI---TGLSKAELEVQGRQRFDDNLAILLRAFLQRQ--PQPCCLVAHNGDRYDFPLLQTELARLSTP 144 (314)
T ss_dssp CBCS-SCCCHHHHHH---HSCCHHHHHHTTCCBSCHHHHHHHHHHHHTS--CSSEEEEETTTTTTHHHHHHHHHHTSSSC
T ss_pred ECCC-CCCCHHHHHh---cCCCHHHHHhCCCCCcHHHHHHHHHHHHhcC--CCCcEEEEeCcHHHHHHHHHHHHHHcCCC
Confidence 3332 3466666654 99999998888874 3 233333321 111 12356888994 899999998874 333
Q ss_pred CCCChHHHHHHHHhhCCccccchhhhHhh-hc---------ccCcHHHHHHH-cCCccCCCCccchhhHHHHHHHHHHHH
Q 023991 179 LPDTQVEFFNLIRIYFPTVYDIKHLMKFC-NS---------LHGGLNKLAEL-LEVERVGICHQAGSDSLLTASTFRKLK 247 (274)
Q Consensus 179 LP~~~~~F~~~l~~~FP~iyDtK~la~~~-~~---------l~~~L~~la~~-L~~~r~~~~HqAGsDs~lT~~~F~~l~ 247 (274)
+|... -...||--+++.+ +. -+-+|..+++. +|++.. ..|.|-+|++.|+++|.++.
T Consensus 145 ~~~~~-----------~~~iDTL~l~r~L~r~~~P~~~~~~~~~~L~~L~~~l~gi~~~-~aHrAl~DA~ata~lf~~l~ 212 (314)
T 3u3y_B 145 SPLDG-----------TFCVDSIAALKALEQASSPSGNGSRKSYSLGSIYTRLYWQAPT-DSHTAEGHVLTLLSICQWKP 212 (314)
T ss_dssp CTTTT-----------CEEEEHHHHHHHHHTTC-------CCCCSHHHHHHHHHSSCCS-CSSSHHHHHHHHHHHHHSSH
T ss_pred CCCCC-----------ceEEeHHHHHHHHHHHhCccccccCCCCCHHHHHHHhcCCCCC-CCCCHHHHHHHHHHHHHHHH
Confidence 33100 0134554433321 11 12389999999 999865 58999999999999999999
Q ss_pred HHhc
Q 023991 248 ENFF 251 (274)
Q Consensus 248 ~~~~ 251 (274)
+.+.
T Consensus 213 ~~~l 216 (314)
T 3u3y_B 213 QALL 216 (314)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8876
No 19
>1wlj_A Interferon stimulated gene 20KDA; exoribonuclease, hydrolase; HET: U5P; 1.90A {Homo sapiens} SCOP: c.55.3.5
Probab=98.30 E-value=4.5e-06 Score=70.75 Aligned_cols=158 Identities=16% Similarity=0.094 Sum_probs=95.4
Q ss_pred cCCeeeEecccccccccCCCCCCCCHHHHHHHHHhcccccceeeeeeeeeecCCCCCCCCCCCeeEEEeeecccCCCCCC
Q 023991 33 DYPYVAMDTEFPGIALRPVGSFKSSYEYHYQTLKSNVDMLKLIQLGLTFSDENGNLPTCGTDKYCVWQFNFREFDVNEDI 112 (274)
Q Consensus 33 ~~~fIAiDtEf~Gl~~~~~~~~~~t~~~rY~~lr~nv~~~~iiQlGlt~~~~~g~~p~~~~~~~~~w~FNF~~F~~~~d~ 112 (274)
..+||++|+|.||+.... .-.|+|+|+. +.+|+ .+ |+.+.-| .. .
T Consensus 4 ~~~~vviD~ETTGl~~~~--------------------~~~iiei~~v--~~~g~---------~i--~~~lV~P-~~-~ 48 (189)
T 1wlj_A 4 SREVVAMDCEMVGLGPHR--------------------ESGLARCSLV--NVHGA---------VL--YDKFIRP-EG-E 48 (189)
T ss_dssp --CEEEEEEEEEEETTTT--------------------EEEEEEEEEE--CTTCC---------EE--EEEEEEC-SS-C
T ss_pred CCeEEEEEeECcCcCCCC--------------------CceEEEEEEE--eCCCC---------EE--EeeEecC-CC-C
Confidence 458999999999984210 1247899985 44554 12 4444222 22 2
Q ss_pred CchhHHHHHHHcCCCccchhhcCCchhHHHHHHHHhcccccCCcceEEeccchhHHHHHHHhCCCCCCCChHHHHHHHHh
Q 023991 113 FANDSIELLKQSGINFTKNNEIGIDAMRFGEFMMSSGIVLSDSMHWVTFHSGYDFGYLLKLLTCQNLPDTQVEFFNLIRI 192 (274)
Q Consensus 113 ~~~~Si~fL~~~GfDFnk~~~~GI~~~~f~e~l~~Sgl~~~~~v~wvtf~g~yD~~yL~k~l~~~~LP~~~~~F~~~l~~ 192 (274)
+.+.+.+. +|+.=..+. .+.+..+..+.+.. ++ ++-.+|+++..||+.+|-+. +|.
T Consensus 49 i~~~~~~i---~GIt~~~l~-~a~~~~~v~~~~~~--~l--~~~~lV~hn~~fD~~~L~~~-----~~~----------- 104 (189)
T 1wlj_A 49 ITDYRTRV---SGVTPQHMV-GATPFAVARLEILQ--LL--KGKLVVGHDLKHDFQALKED-----MSG----------- 104 (189)
T ss_dssp EEECCHHH---HCCCHHHHT-TCEEHHHHHHHHHH--HH--TTSEEEESSHHHHHHHTTCC-----CTT-----------
T ss_pred CCccccCC---CCCCHHHHc-CCCCHHHHHHHHHH--HH--CCCEEEECCcHHHHHHHHHh-----CCC-----------
Confidence 33344333 565544332 24444332222221 11 13467888888999876432 331
Q ss_pred hCCccccchhhhHhhh--cc----cCcHHHHHHH-cCCccCCC--CccchhhHHHHHHHHHHHHHHhc
Q 023991 193 YFPTVYDIKHLMKFCN--SL----HGGLNKLAEL-LEVERVGI--CHQAGSDSLLTASTFRKLKENFF 251 (274)
Q Consensus 193 ~FP~iyDtK~la~~~~--~l----~~~L~~la~~-L~~~r~~~--~HqAGsDs~lT~~~F~~l~~~~~ 251 (274)
..++||..+....+ .+ +-+|..+++. +|++..+. .|.|-.|+..|+++|.+|.+.+.
T Consensus 105 --~~~idt~~~~~~~~~~~~p~~~~~~L~~l~~~~lgi~~~~~~~~H~Al~Da~ata~l~~~l~~~~~ 170 (189)
T 1wlj_A 105 --YTIYDTSTDRLLWREAKLDHCRRVSLRVLSERLLHKSIQNSLLGHSSVEDARATMELYQISQRIRA 170 (189)
T ss_dssp --CEEEEGGGCHHHHHHHTC-----CCHHHHHHHHTCCCCSCCTTCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred --CceechHhhhhhhhcccCCCCCCccHHHHHHHHcCCCCCCCCCCcCcHHHHHHHHHHHHHHHHHHH
Confidence 14789876643221 22 4589999998 89986553 89999999999999999988776
No 20
>2qxf_A Exodeoxyribonuclease I; alpha-beta domain, DNAQ superfamily, SH3-like domain, produc structure, DNA damage, DNA repair, exonuclease; HET: TMP; 1.50A {Escherichia coli} SCOP: c.55.3.5 PDB: 1fxx_A* 3c94_A 3c95_A 3hl8_A* 3hp9_A*
Probab=98.20 E-value=1.2e-05 Score=78.23 Aligned_cols=175 Identities=15% Similarity=0.113 Sum_probs=111.1
Q ss_pred hhcCCeeeEecccccccccCCCCCCCCHHHHHHHHHhcccccceeeeeeeeeecCCCCCCCCCCCeeEEEeeecccCCCC
Q 023991 31 VDDYPYVAMDTEFPGIALRPVGSFKSSYEYHYQTLKSNVDMLKLIQLGLTFSDENGNLPTCGTDKYCVWQFNFREFDVNE 110 (274)
Q Consensus 31 i~~~~fIAiDtEf~Gl~~~~~~~~~~t~~~rY~~lr~nv~~~~iiQlGlt~~~~~g~~p~~~~~~~~~w~FNF~~F~~~~ 110 (274)
+...+||++|+|.||+... .-.|||||....+.+|+.- ..+|+.+ .....
T Consensus 6 ~~~~~~vv~DlETTGl~p~---------------------~d~IIEIgaV~vd~~g~ii--------~~~f~~l-VkP~~ 55 (482)
T 2qxf_A 6 KQQSTFLFHDYETFGTHPA---------------------LDRPAQFAAIRTDSEFNVI--------GEPEVFY-CKPAD 55 (482)
T ss_dssp -CCCEEEEEEEEESSSCTT---------------------TSCEEEEEEEEECTTSCBC--------SCCEEEE-BCCCT
T ss_pred CCCCCEEEEEEECCCCCCC---------------------CCeEEEEEEEEEECCCeEE--------eeeeEEE-ECCCC
Confidence 4567899999999998421 0149999999988777631 1136665 44444
Q ss_pred CC-CchhHHHHHHHcCCCccchhhcCCchhHHHHHHHHhcccccCCcceEEec-cchhHHHHHHHhCC---CCCCCChHH
Q 023991 111 DI-FANDSIELLKQSGINFTKNNEIGIDAMRFGEFMMSSGIVLSDSMHWVTFH-SGYDFGYLLKLLTC---QNLPDTQVE 185 (274)
Q Consensus 111 d~-~~~~Si~fL~~~GfDFnk~~~~GI~~~~f~e~l~~Sgl~~~~~v~wvtf~-g~yD~~yL~k~l~~---~~LP~~~~~ 185 (274)
+. .+++++ .-+|+.=..+...|.+..+..+.+.. .+..++..+|+++ -.||..+|-+.+.. .++|..+.
T Consensus 56 ~ilp~p~a~---~IhGIT~e~l~~ap~~~~evl~~f~~--~l~~~~~~lVaHNs~~FD~~fL~~~~~r~g~~~~~~~w~- 129 (482)
T 2qxf_A 56 DYLPQPGAV---LITGITPQEARAKGENEAAFAARIHS--LFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAWSWQ- 129 (482)
T ss_dssp TCCCCHHHH---HHHCCCHHHHHHHCBCHHHHHHHHHH--HHTSTTEEEEESSTTTTHHHHHHHHHHHTTSCSSGGGTG-
T ss_pred CCCCCHHHH---HHhCCCHHHHhcCCCCHHHHHHHHHH--HHcCCCCEEEEECCHHHHHHHHHHHHHHhCCCccccccc-
Confidence 33 356666 44899888888888885444333321 0111344688888 48999998887742 22221110
Q ss_pred HHHHHHhhCCccccchhhhHhhhc--------------c-cCcHHHHHHHcCCccCCCCccchhhHHHHHHHHHHHHHH
Q 023991 186 FFNLIRIYFPTVYDIKHLMKFCNS--------------L-HGGLNKLAELLEVERVGICHQAGSDSLLTASTFRKLKEN 249 (274)
Q Consensus 186 F~~~l~~~FP~iyDtK~la~~~~~--------------l-~~~L~~la~~L~~~r~~~~HqAGsDs~lT~~~F~~l~~~ 249 (274)
-....+||--+++.+.. . +-+|+.+++.+|++. +.+|.|-+|++.|+.+|.+|++.
T Consensus 130 -------~~~~~iDtl~l~r~~~~~~~~~~~wP~~~~~~~s~kL~~L~~~~Gi~~-~~aHrAL~DA~aTa~l~~~l~~~ 200 (482)
T 2qxf_A 130 -------HDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEH-SNAHDAMADVYATIAMAKLVKTR 200 (482)
T ss_dssp -------GGCEEEEHHHHHHHHHHHCCTTSCCCBCTTSSBCCCHHHHHHHTTCCC-C---CTTHHHHHHHHHHHHHHHH
T ss_pred -------cCCceeeHHHHHHHHHHhCcccccCcccccCCCCCCHHHHHHHcCCCC-CCCCCHHHHHHHHHHHHHHHHHh
Confidence 00234566666555421 1 237999999999986 45799999999999999998764
No 21
>2igi_A Oligoribonuclease; RNAse, exoribonuclease, exonuclease, hydrolase, mRNA decay; 1.70A {Escherichia coli} SCOP: c.55.3.5 PDB: 1yta_A 1j9a_A
Probab=98.04 E-value=8.3e-05 Score=62.00 Aligned_cols=169 Identities=15% Similarity=0.162 Sum_probs=95.3
Q ss_pred cCCeeeEecccccccccCCCCCCCCHHHHHHHHHhcccccceeeeeeeeeecCCCCCCCCCCCeeEEEeeecccCCCCC-
Q 023991 33 DYPYVAMDTEFPGIALRPVGSFKSSYEYHYQTLKSNVDMLKLIQLGLTFSDENGNLPTCGTDKYCVWQFNFREFDVNED- 111 (274)
Q Consensus 33 ~~~fIAiDtEf~Gl~~~~~~~~~~t~~~rY~~lr~nv~~~~iiQlGlt~~~~~g~~p~~~~~~~~~w~FNF~~F~~~~d- 111 (274)
.-+||++|+|.||+.... =.|||+|....+.+|+ .....|+.+ .+....
T Consensus 4 ~~~~v~iD~ETTGl~~~~---------------------~~IieIg~v~~~~~~~--------~~~~~~~~l-v~P~~~i 53 (180)
T 2igi_A 4 ENNLIWIDLEMTGLDPER---------------------DRIIEIATLVTDANLN--------ILAEGPTIA-VHQSDEQ 53 (180)
T ss_dssp GGCEEEEEEEESSSCTTT---------------------CCEEEEEEEEECTTCC--------EEEEEEEEE-CCCCHHH
T ss_pred CCcEEEEEeeCCCCCCCC---------------------CceEEEEEEEEcCCCc--------EecCCcceE-ECCCHHH
Confidence 348999999999984210 1499999997775554 122336666 332221
Q ss_pred --CCchhHHHHHHHcCCCccchhhcCCchhHHHHHHHH--hcccccCCcceEEeccchhHHHHHHHhCCCCCCCChHHHH
Q 023991 112 --IFANDSIELLKQSGINFTKNNEIGIDAMRFGEFMMS--SGIVLSDSMHWVTFHSGYDFGYLLKLLTCQNLPDTQVEFF 187 (274)
Q Consensus 112 --~~~~~Si~fL~~~GfDFnk~~~~GI~~~~f~e~l~~--Sgl~~~~~v~wvtf~g~yD~~yL~k~l~~~~LP~~~~~F~ 187 (274)
..++.+.+.-.-+|+.=.. ...|.+..+..+.+.. .+..-.....+|+++..||+.+|-+.+- .
T Consensus 54 ~~~i~~~~~~~~~itGIt~~~-l~~~~~~~~v~~~~~~~l~~~~~~~~~~lv~hn~~fD~~fL~~~~~---------~-- 121 (180)
T 2igi_A 54 LALMDDWNVRTHTASGLVERV-KASTMGDREAELATLEFLKQWVPAGKSPICGNSIGQDRRFLFKYMP---------E-- 121 (180)
T ss_dssp HTTCCHHHHHHHHHTTHHHHH-HHCCCCHHHHHHHHHHHHTTTSCTTTSCEEESSHHHHHHHHHHHCH---------H--
T ss_pred hhcCCHHHHHHHHHcCCCHHH-HhcCCCHHHHHHHHHHHHHHhCCCCCceEEecCHHHHHHHHHHHHH---------H--
Confidence 2333343333335665333 3456655443333221 1111111246777777999999987652 1
Q ss_pred HHHHhhCC-ccccchhhhHhhhcccCcHHHHHHHcCCccCCCCccchhhHHHHHHHHHHHHHHhc
Q 023991 188 NLIRIYFP-TVYDIKHLMKFCNSLHGGLNKLAELLEVERVGICHQAGSDSLLTASTFRKLKENFF 251 (274)
Q Consensus 188 ~~l~~~FP-~iyDtK~la~~~~~l~~~L~~la~~L~~~r~~~~HqAGsDs~lT~~~F~~l~~~~~ 251 (274)
+...++ ..+|+..+.+....+..++. .+++ ....|.|-.|+..|+.+|.++++.++
T Consensus 122 --~~~~~~~~~~d~~tl~~l~~~~~p~~~-----~~i~-~~~~H~Al~Da~ata~l~~~~~~~~~ 178 (180)
T 2igi_A 122 --LEAYFHYRYLDVSTLKELARRWKPEIL-----DGFT-KQGTHQAMDDIRESVAELAYYREHFI 178 (180)
T ss_dssp --HHHHSCSCEEETHHHHHHHHHHCGGGG-----GGSC-CCCCCCHHHHHHHHHHHHHHHHHHTB
T ss_pred --hccCCCcceeeHHHHHHHHHHhChHhh-----hCCC-CcCCcCcHHHHHHHHHHHHHHHHHhh
Confidence 122343 46785444322221211221 1442 35689999999999999999998876
No 22
>2gbz_A Oligoribonuclease; ORN, deddh, structural genomics, hydrolase; 2.30A {Xanthomonas campestris PV}
Probab=97.80 E-value=0.00025 Score=60.20 Aligned_cols=170 Identities=11% Similarity=0.108 Sum_probs=94.7
Q ss_pred hcCCeeeEecccccccccCCCCCCCCHHHHHHHHHhcccccceeeeeeeeeecCCCCCCCCCCCeeEEEeeecccCCCCC
Q 023991 32 DDYPYVAMDTEFPGIALRPVGSFKSSYEYHYQTLKSNVDMLKLIQLGLTFSDENGNLPTCGTDKYCVWQFNFREFDVNED 111 (274)
Q Consensus 32 ~~~~fIAiDtEf~Gl~~~~~~~~~~t~~~rY~~lr~nv~~~~iiQlGlt~~~~~g~~p~~~~~~~~~w~FNF~~F~~~~d 111 (274)
...+||++|+|.||+... . =.|||+|....+ |+.. .....|+.. .+....
T Consensus 7 ~~~~~vviD~ETTGl~p~-----~----------------d~IieIgav~~~--~~~~------~~~~~~~~~-v~p~~~ 56 (194)
T 2gbz_A 7 GNDRLIWIDLEMTGLDTD-----R----------------DSIIEIATIVTD--AQLN------VLAEGPELA-IAHSLE 56 (194)
T ss_dssp -CCEEEEEEEEESCSCTT-----T----------------CCEEEEEEEEEE--TTCC------EEEECCCEE-CCCCHH
T ss_pred CCCCEEEEEeECCCCCCC-----C----------------CccEEEEEEEEc--CCcc------eeccCceEE-EeCCHH
Confidence 556899999999998521 0 149999987743 4321 122345554 322211
Q ss_pred C---CchhHHHHHHHcCCCccchhhcCCchhHHHHHHHH--hcccccCCcceEEeccchhHHHHHHHhCCCCCCCChHHH
Q 023991 112 I---FANDSIELLKQSGINFTKNNEIGIDAMRFGEFMMS--SGIVLSDSMHWVTFHSGYDFGYLLKLLTCQNLPDTQVEF 186 (274)
Q Consensus 112 ~---~~~~Si~fL~~~GfDFnk~~~~GI~~~~f~e~l~~--Sgl~~~~~v~wvtf~g~yD~~yL~k~l~~~~LP~~~~~F 186 (274)
. +++...+.-.-+|+.=. ....|.+..+..+.+.. .+-+......+|+++..||+.+|-+.+- .
T Consensus 57 i~~~~~~~~~~~~~itGIt~~-~l~~~p~~~ev~~~~~~~l~~~~~~~~~~lvghn~~FD~~fL~~~~~---------~- 125 (194)
T 2gbz_A 57 TLEAMDEWNRNQHRRSGLWQR-VLDSQVTHAQAEAQTVAFLGEWIRAGASPMCGNSICQDRRFLHRQMS---------R- 125 (194)
T ss_dssp HHHTSCSHHHHHHHHHTHHHH-HHHCCCCHHHHHHHHHHHHTTTCCTTSSCEEESSHHHHHHHHHHHCH---------H-
T ss_pred HhhccchHHHHHHHhhCCCHH-HHhcCCCHHHHHHHHHHHHHHhCCCCCceEEecCHHHhHHHHHHHHH---------H-
Confidence 1 12112222233666533 34556666544333322 1222222335889989999999988752 1
Q ss_pred HHHHHhhC-CccccchhhhHhhhcccCcHHHHHHHcCCccCCCCccchhhHHHHHHHHHHHHHHhc
Q 023991 187 FNLIRIYF-PTVYDIKHLMKFCNSLHGGLNKLAELLEVERVGICHQAGSDSLLTASTFRKLKENFF 251 (274)
Q Consensus 187 ~~~l~~~F-P~iyDtK~la~~~~~l~~~L~~la~~L~~~r~~~~HqAGsDs~lT~~~F~~l~~~~~ 251 (274)
+..++ .+..|+..+.+.+..+... +++ ++ +....|.|-+|+..|+++|..+++.++
T Consensus 126 ---~~~~~~~~~~d~~~l~~l~~~~~p~---~~~--~i-~~~~~H~Al~Da~ata~ll~~~~~~~~ 182 (194)
T 2gbz_A 126 ---LERYFHYRNLDVSTIKELARRWAPA---VAS--GF-AKSSAHTALSDVRDSIDELRHYRQFMG 182 (194)
T ss_dssp ---HHHHSCSCEEEHHHHHHHHHHHCGG---GGT--TC-CCCSCCSHHHHHHHHHHHHHHHHTTSH
T ss_pred ---hcccCCCccccHHHHHHHHHHhCHH---HHh--CC-CCCCCcccHHHHHHHHHHHHHHHHHhc
Confidence 12334 3566876544333222111 111 23 345689999999999999999998776
No 23
>3tr8_A Oligoribonuclease; transcription, hydrolase; 2.50A {Coxiella burnetii}
Probab=97.44 E-value=0.003 Score=53.61 Aligned_cols=169 Identities=12% Similarity=0.109 Sum_probs=102.0
Q ss_pred hcCCeeeEecccccccccCCCCCCCCHHHHHHHHHhcccccceeeeeeeeeecCCCCCCCCCCCeeEEEeeecccCCCC-
Q 023991 32 DDYPYVAMDTEFPGIALRPVGSFKSSYEYHYQTLKSNVDMLKLIQLGLTFSDENGNLPTCGTDKYCVWQFNFREFDVNE- 110 (274)
Q Consensus 32 ~~~~fIAiDtEf~Gl~~~~~~~~~~t~~~rY~~lr~nv~~~~iiQlGlt~~~~~g~~p~~~~~~~~~w~FNF~~F~~~~- 110 (274)
.+.+||.+|+|.||+.... =.|||+|.-..+.+++ .....+.+..-+..+
T Consensus 7 ~~~~~v~~D~ETTGL~p~~---------------------d~IiEIgaV~~d~~~~--------i~~~~~~~~i~~p~~~ 57 (186)
T 3tr8_A 7 SDDNLIWLDLEMTGLDPER---------------------DRIIEIATIVTNSHLD--------ILAEGPAFAIHQPDKL 57 (186)
T ss_dssp CTTCEEEEEEEESSSCTTT---------------------CCEEEEEEEEECTTCC--------EEEECCCEECCCCHHH
T ss_pred CCCcEEEEEEECCCCCCCC---------------------CceEEEEEEEEcCCeE--------EeeeeEEEEEeCCccc
Confidence 3468999999999995321 1399999985543333 112223333112211
Q ss_pred -CCCchhHHHHHHHcCCCccchhhcCCchhHHHHHHHHh--cccccCCcceEEeccchhHHHHHHHhCCCCCCCChHHHH
Q 023991 111 -DIFANDSIELLKQSGINFTKNNEIGIDAMRFGEFMMSS--GIVLSDSMHWVTFHSGYDFGYLLKLLTCQNLPDTQVEFF 187 (274)
Q Consensus 111 -d~~~~~Si~fL~~~GfDFnk~~~~GI~~~~f~e~l~~S--gl~~~~~v~wvtf~g~yD~~yL~k~l~~~~LP~~~~~F~ 187 (274)
+...+.+.+--.-+|+. ++....|.+..+..+.+..- +-+...+...|.++-.||.+||-+-+
T Consensus 58 l~~~~~~~~~ih~ltGIt-~~~l~~~p~~~ev~~~~l~fl~~~~~~~~~~lvghn~~FD~~FL~~~~------------- 123 (186)
T 3tr8_A 58 LTAMDNWNTSHHTASGLL-ERVKNSSVDEVEAETLTLAFLEKYVSAGKSPLCGNSVCQDRRFLSRYM------------- 123 (186)
T ss_dssp HTTSCHHHHHHHHHTSHH-HHHHTCCCCHHHHHHHHHHHHTTTSCTTCSCEEESSTHHHHHHHHHHC-------------
T ss_pred cccCCcccHHHHhccCCC-HHHHhcCCCHHHHHHHHHHHHHHhccCCCcEEEEEcHHHhHHHHHHHH-------------
Confidence 12344455554556876 77777888887665554431 11212344577777899999998874
Q ss_pred HHHHhhCC-cccc--c-hhhhHhhhcccCcHHHHHHHcCCccCCCCccchhhHHHHHHHHHHHHHHhcC
Q 023991 188 NLIRIYFP-TVYD--I-KHLMKFCNSLHGGLNKLAELLEVERVGICHQAGSDSLLTASTFRKLKENFFS 252 (274)
Q Consensus 188 ~~l~~~FP-~iyD--t-K~la~~~~~l~~~L~~la~~L~~~r~~~~HqAGsDs~lT~~~F~~l~~~~~~ 252 (274)
..+...|+ ++.| | |.|++.. ..++.. ++ .....|.|=.|+.-|...+.-.++.+|.
T Consensus 124 ~~~~~~~~~~~iDvsTl~elar~~---~P~~~~-----~~-~~~~~HrAl~Da~ati~~l~~y~~~~~~ 183 (186)
T 3tr8_A 124 PRLNQFFHYRHLDVTTLKILAQRW---APQIAA-----AH-IKESQHLALQDIRDSIEELRYYRAHLLN 183 (186)
T ss_dssp HHHHHHSCSCEEEHHHHHHHHHHH---CHHHHT-----TS-CCCCCSCHHHHHHHHHHHHHHHHHHTBC
T ss_pred HHcCCCCCCcEEeHHHHHHHHHHH---Cccccc-----cC-CCCCCcChHHHHHHHHHHHHHHHHHhhc
Confidence 11234454 6888 3 3355543 112211 33 2456899999999999999888888774
No 24
>2kfn_A Klenow fragment of DNA polymerase I; complex (polymerase/DNA), exonuclease, transferase, transferase/DNA complex; HET: US1; 2.03A {Escherichia coli} SCOP: c.55.3.5 e.8.1.1 PDB: 1d9f_A* 1d9d_A* 1krp_A* 1ksp_A* 1qsl_A* 1kfs_A* 2kfz_A* 2kzm_A* 2kzz_A* 1dpi_A* 1kfd_A* 1kln_A* 1d8y_A*
Probab=96.17 E-value=0.14 Score=50.67 Aligned_cols=86 Identities=20% Similarity=0.154 Sum_probs=62.7
Q ss_pred cccCCcceEEeccchhHHHHHHHhCCCCCCCChHHHHHHHHhhCCccccchhhhHhhhc-c-cCcHHHHHHHc-CCccC-
Q 023991 151 VLSDSMHWVTFHSGYDFGYLLKLLTCQNLPDTQVEFFNLIRIYFPTVYDIKHLMKFCNS-L-HGGLNKLAELL-EVERV- 226 (274)
Q Consensus 151 ~~~~~v~wvtf~g~yD~~yL~k~l~~~~LP~~~~~F~~~l~~~FP~iyDtK~la~~~~~-l-~~~L~~la~~L-~~~r~- 226 (274)
+.++++.||.|+..||+.+|.+. |-++| +.++||..++..+.. . +-+|..|++.+ +++.+
T Consensus 86 L~d~~i~kV~hnak~D~~~L~~~--Gi~l~--------------~~~~DT~laayLL~p~~~~~~L~~La~~~Lg~~~i~ 149 (605)
T 2kfn_A 86 LEDEKALKVGQNLKYDRGILANY--GIELR--------------GIAFDTMLESYILNSVAGRHDMDSLAERWLKHKTIT 149 (605)
T ss_dssp HTCTTSCEEESSHHHHHHHHHTT--TCCCC--------------CEEEEHHHHHHHHCTTSSCCSHHHHHHHHSCCCCCC
T ss_pred HcCCCCeEEEECcHHHHHHHHHC--CCCCC--------------CccccHHHHHHHhCCCCCCCCHHHHHHHhcCCCccc
Confidence 34556889999999999988762 43332 247999988887743 2 45899999887 76532
Q ss_pred -----CC---------------CccchhhHHHHHHHHHHHHHHhcC
Q 023991 227 -----GI---------------CHQAGSDSLLTASTFRKLKENFFS 252 (274)
Q Consensus 227 -----~~---------------~HqAGsDs~lT~~~F~~l~~~~~~ 252 (274)
|+ .|-|..|+.+|.++|.+|.+....
T Consensus 150 ~~~~~gKg~~~~~~~~~~le~~~~yAa~Da~~~~~L~~~L~~~L~~ 195 (605)
T 2kfn_A 150 FEEIAGKGKNQLTFNQIALEEAGRYAAEDADVTLQLHLKMWPDLQK 195 (605)
T ss_dssp HHHHHCSSTTCCCGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHhCCCcccCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11 145889999999999999876543
No 25
>2hbj_A Exosome complex exonuclease RRP6; RNA metabolism, RNA surveillance, RNA processing, hydrolase, gene regulation; 2.10A {Saccharomyces cerevisiae} SCOP: a.60.8.4 c.55.3.5 PDB: 2hbk_A 2hbl_A* 2hbm_A*
Probab=62.12 E-value=21 Score=33.21 Aligned_cols=85 Identities=16% Similarity=0.142 Sum_probs=60.8
Q ss_pred ccCCcceEEeccchhHHHHHHHhCCCCCCCChHHHHHHHHhhCCccccchhhhHhhhcccCcHHHHHHHc-CCccC----
Q 023991 152 LSDSMHWVTFHSGYDFGYLLKLLTCQNLPDTQVEFFNLIRIYFPTVYDIKHLMKFCNSLHGGLNKLAELL-EVERV---- 226 (274)
Q Consensus 152 ~~~~v~wvtf~g~yD~~yL~k~l~~~~LP~~~~~F~~~l~~~FP~iyDtK~la~~~~~l~~~L~~la~~L-~~~r~---- 226 (274)
.++++.+|.|...+|+..|.+.+ |-. ..+++||...+..++.-+-||..|++.+ ++.-.
T Consensus 156 ~d~~i~KV~h~~k~Dl~~L~~~~-Gi~---------------~~~~fDt~lAa~LL~~~~~~L~~L~~~~lg~~l~K~~~ 219 (410)
T 2hbj_A 156 TNPSIVKVFHGAFMDIIWLQRDL-GLY---------------VVGLFDTYHASKAIGLPRHSLAYLLENFANFKTSKKYQ 219 (410)
T ss_dssp TCTTSEEEESSCHHHHHHHHHHH-CCC---------------CSSEEEHHHHHHHHTCSCCSHHHHHHHHSCCCCCCTTT
T ss_pred cCCCceEEEEehHHHHHHHHHHc-CCC---------------cCCEEEcHHHHHHhCCCccCHHHHHHHHcCCCCCcccc
Confidence 45678899999999998887654 322 2358999988877753357999999876 54310
Q ss_pred -----------CCCccchhhHHHHHHHHHHHHHHhcC
Q 023991 227 -----------GICHQAGSDSLLTASTFRKLKENFFS 252 (274)
Q Consensus 227 -----------~~~HqAGsDs~lT~~~F~~l~~~~~~ 252 (274)
....-|..|++.+..++-+|++....
T Consensus 220 ~sdW~~rpL~~~q~~YAa~Da~~ll~L~~~L~~~L~~ 256 (410)
T 2hbj_A 220 LADWRIRPLSKPMTAAARADTHFLLNIYDQLRNKLIE 256 (410)
T ss_dssp TSCTTCSSCCHHHHHHHHHHHHTHHHHHHHHHHHHHH
T ss_pred ccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 01123789999999999999888753
No 26
>1yt3_A Ribonuclease D, RNAse D; exoribonuclease, exonuclease, hydrolase, tRNA processing, hydrolase,translation; 1.60A {Escherichia coli} SCOP: a.60.8.3 a.60.8.3 c.55.3.5
Probab=51.60 E-value=39 Score=30.71 Aligned_cols=84 Identities=18% Similarity=0.158 Sum_probs=58.8
Q ss_pred ccCCcceEEeccchhHHHHHHHhCCCCCCCChHHHHHHHHhhCCccccchhhhHhhhcc-cCcHHHHHHHc-CCccC---
Q 023991 152 LSDSMHWVTFHSGYDFGYLLKLLTCQNLPDTQVEFFNLIRIYFPTVYDIKHLMKFCNSL-HGGLNKLAELL-EVERV--- 226 (274)
Q Consensus 152 ~~~~v~wvtf~g~yD~~yL~k~l~~~~LP~~~~~F~~~l~~~FP~iyDtK~la~~~~~l-~~~L~~la~~L-~~~r~--- 226 (274)
.++++.+|.|+..+|+..|.+.+ |-. ...++||...+..++.- .-||..|++.. ++.-.
T Consensus 71 ~d~~i~Kv~h~~k~Dl~~L~~~~-Gi~---------------~~~~fDt~lAa~lL~~~~~~~L~~L~~~~l~~~l~K~~ 134 (375)
T 1yt3_A 71 RDPSITKFLHAGSEDLEVFLNVF-GEL---------------PQPLIDTQILAAFCGRPMSWGFASMVEEYSGVTLDKSE 134 (375)
T ss_dssp HCTTSEEEESSCHHHHHHHHHHH-SSC---------------CSSEEEHHHHHHHTTCCTTCCHHHHHHHHHCCCCCCTT
T ss_pred cCCCceEEEeeHHHHHHHHHHHc-CCC---------------CCcEEEcHHHHHHcCCCCChhHHHHHHHHcCCCCCCCc
Confidence 34578899999999998887643 321 13678999888877532 45899998865 64321
Q ss_pred ------------CCCccchhhHHHHHHHHHHHHHHhc
Q 023991 227 ------------GICHQAGSDSLLTASTFRKLKENFF 251 (274)
Q Consensus 227 ------------~~~HqAGsDs~lT~~~F~~l~~~~~ 251 (274)
...+-|..|++.+..++-+|.+...
T Consensus 135 ~~sdw~~rpL~~~q~~YAa~Da~~l~~L~~~L~~~L~ 171 (375)
T 1yt3_A 135 SRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETE 171 (375)
T ss_dssp TTSCTTSSSCCHHHHHHHHHHHHTHHHHHHHHHHHHH
T ss_pred ccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0112378899999999999887764
No 27
>3saf_A Exosome component 10; exoribonuclease, RNA exosome, hydrolase; 2.50A {Homo sapiens} PDB: 3sag_A 3sah_A 2cpr_A
Probab=47.51 E-value=41 Score=31.62 Aligned_cols=84 Identities=15% Similarity=0.188 Sum_probs=58.3
Q ss_pred ccCCcceEEeccchhHHHHHHHhCCCCCCCChHHHHHHHHhhCCccccchhhhHhhhcccCcHHHHHHH-cCCccC----
Q 023991 152 LSDSMHWVTFHSGYDFGYLLKLLTCQNLPDTQVEFFNLIRIYFPTVYDIKHLMKFCNSLHGGLNKLAEL-LEVERV---- 226 (274)
Q Consensus 152 ~~~~v~wvtf~g~yD~~yL~k~l~~~~LP~~~~~F~~~l~~~FP~iyDtK~la~~~~~l~~~L~~la~~-L~~~r~---- 226 (274)
.++++..|.++..+|+..|.+.+ |-. ..+++||...+..++.-+.||..|++. ||++-.
T Consensus 179 ~dp~i~KV~H~~k~Dl~~L~~~~-Gi~---------------~~~~fDT~lAa~lL~~~~~gL~~Lv~~~Lg~~l~K~~~ 242 (428)
T 3saf_A 179 TDPAIVKVFHGADSDIEWLQKDF-GLY---------------VVNMFDTHQAARLLNLGRHSLDHLLKLYCNVDSNKQYQ 242 (428)
T ss_dssp TCTTSEEEESSCHHHHHHHHHHH-CCC---------------CSSEEEHHHHHHHTTCSCCSHHHHHHHHHCCCCCCTTT
T ss_pred cCCCceEEEeehHHHHHHHHHHc-CCC---------------cCceeechhHHHHhCCCCCCHHHHHHHHcCCCCCcccc
Confidence 45678889988889998776543 322 135889998888775334689998764 454310
Q ss_pred -----------CCCccchhhHHHHHHHHHHHHHHhc
Q 023991 227 -----------GICHQAGSDSLLTASTFRKLKENFF 251 (274)
Q Consensus 227 -----------~~~HqAGsDs~lT~~~F~~l~~~~~ 251 (274)
...+-|..|+..+.+++-+|+....
T Consensus 243 ~sdW~~rpLs~~q~~YAA~DA~~ll~L~~~L~~~L~ 278 (428)
T 3saf_A 243 LADWRIRPLPEEMLSYARDDTHYLLYIYDKMRLEMW 278 (428)
T ss_dssp TSCTTCSSCCHHHHHHHHHHHHTHHHHHHHHHHHHH
T ss_pred ccccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0123488899999999999988765
No 28
>2ogf_A Hypothetical protein MJ0408; structural genomics, unknown function, NYSGXRC, PSI-2, prote structure initiative; HET: MSE OXG; 1.89A {Methanocaldococcus jannaschii}
Probab=42.72 E-value=12 Score=29.42 Aligned_cols=46 Identities=24% Similarity=0.363 Sum_probs=37.5
Q ss_pred EEeccchhHHHHHHHhCCCCC-CCChHHHHHHHHhhC---Cccccchhhh
Q 023991 159 VTFHSGYDFGYLLKLLTCQNL-PDTQVEFFNLIRIYF---PTVYDIKHLM 204 (274)
Q Consensus 159 vtf~g~yD~~yL~k~l~~~~L-P~~~~~F~~~l~~~F---P~iyDtK~la 204 (274)
..|-+|.-||-|++.+.|.|. |++.+.-.+.+..-. |.+.|+|.=.
T Consensus 23 A~FEaGIklGALyHQFvGtPV~~eta~sLE~AIE~si~~QP~v~~v~V~I 72 (122)
T 2ogf_A 23 AVFEGGITLGALFHQFVGTPVSKYNKESLERAIEEAMKNQPCVYDIKVKI 72 (122)
T ss_dssp HHHHHHHHHHHHHHHHTTCEECTTTHHHHHHHHHHHHHTSTTEEEEEEEE
T ss_pred HHHHhhhhhhhHhhhhcCCccCcccHHHHHHHHHHHHhcCCceEEEEEEE
Confidence 358889999999999999999 999888777766555 8888877544
No 29
>4i4d_A Peptide synthetase NRPS type II-PCP; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MLY; 2.10A {Streptomyces verticillus}
Probab=40.26 E-value=37 Score=24.18 Aligned_cols=35 Identities=23% Similarity=0.221 Sum_probs=28.1
Q ss_pred HHHHcCCccCC---CCccchhhHHHHHHHHHHHHHHhc
Q 023991 217 LAELLEVERVG---ICHQAGSDSLLTASTFRKLKENFF 251 (274)
Q Consensus 217 la~~L~~~r~~---~~HqAGsDs~lT~~~F~~l~~~~~ 251 (274)
+++.|+++.++ ...+.|.||+++.+.-.+|++.+.
T Consensus 25 ~~~vL~~~~i~~~~~Ff~lGgdSL~a~~l~~~l~~~~g 62 (93)
T 4i4d_A 25 WAETLGRDSVGPHEDFAALGGNSIHAIXITNRVEELVD 62 (93)
T ss_dssp HHHHHTCSCCCTTCCTTTTTCCHHHHHHHHHHHHHHHT
T ss_pred HHHHhCCCCCCCCCCHHHcCCcHHHHHHHHHHHHHHhC
Confidence 46778887654 356899999999999999988764
No 30
>2i52_A Hypothetical protein; structural genomics, unknown function, PSI, protein structur initiative; 2.08A {Picrophilus torridus} SCOP: d.316.1.1
Probab=39.82 E-value=14 Score=29.00 Aligned_cols=45 Identities=16% Similarity=0.222 Sum_probs=37.0
Q ss_pred EeccchhHHHHHHHhCCCCC-CCChHHHHHHHHhhC---Cccccchhhh
Q 023991 160 TFHSGYDFGYLLKLLTCQNL-PDTQVEFFNLIRIYF---PTVYDIKHLM 204 (274)
Q Consensus 160 tf~g~yD~~yL~k~l~~~~L-P~~~~~F~~~l~~~F---P~iyDtK~la 204 (274)
.|-+|.-||-|++.+.|.|. |+|.+.-.+.+..-. |.+.|+|.=.
T Consensus 19 ~FEaGIklGALyHQFvGtPV~~eta~sLE~AIE~si~~QP~v~~v~V~I 67 (121)
T 2i52_A 19 FFEAGIKLGAIFHQYTGIPVNSENASMAEEFIERSTMIQPFVENVRISI 67 (121)
T ss_dssp HHHHHHHHHHHHHHHTTCEECTTTHHHHHHHHHHHHTTSTTEEEEEEEE
T ss_pred HHHhhhhhhhhhhhccCCccCcccHHHHHHHHHHHHhcCCceEEEEEEE
Confidence 47889999999999999999 999888777766555 8888877543
No 31
>2e6m_A Werner syndrome ATP-dependent helicase homolog; APO form, hydrolase; 2.00A {Mus musculus} PDB: 2e6l_A 2fby_A 2fbv_A 2fbx_A 2fbt_A 2fc0_A*
Probab=35.40 E-value=56 Score=26.70 Aligned_cols=84 Identities=13% Similarity=-0.045 Sum_probs=53.7
Q ss_pred ccCCcceEEeccchhHHHHHHHhCCCCCCCChHHHHHHHHhhCCcccc-chhhhHhhhc-ccCcHHHHHHHc-CCccC--
Q 023991 152 LSDSMHWVTFHSGYDFGYLLKLLTCQNLPDTQVEFFNLIRIYFPTVYD-IKHLMKFCNS-LHGGLNKLAELL-EVERV-- 226 (274)
Q Consensus 152 ~~~~v~wvtf~g~yD~~yL~k~l~~~~LP~~~~~F~~~l~~~FP~iyD-tK~la~~~~~-l~~~L~~la~~L-~~~r~-- 226 (274)
.++++..|+++..+|+..|.+.+ |-. ..+++| |...+..+.. -.-||+.|++.. +..-.
T Consensus 93 ~d~~i~Kv~~~~k~D~~~L~~~~-gi~---------------~~~~fDlt~lAayll~~~~~~~L~~L~~~~l~~~~~K~ 156 (208)
T 2e6m_A 93 ENKSIKKAGVGIEGDQWKLLRDF-DVK---------------LESFVELTDVANEKLKCAETWSLNGLVKHVLGKQLLKD 156 (208)
T ss_dssp TCTTSEEEESSHHHHHHHHHHHH-CCC---------------CCSEEEHHHHHHHHTTCCCCCCHHHHHHHHHSCBCCCC
T ss_pred cCCCceEEEEeeHHHHHHHHHHC-CCC---------------CCCEEEHHHHHHHHccCCCChhHHHHHHHHcCCCcCCC
Confidence 35678899998888988777643 322 225888 5444433332 245899988765 53210
Q ss_pred -----------C----CCccchhhHHHHHHHHHHHHHHhc
Q 023991 227 -----------G----ICHQAGSDSLLTASTFRKLKENFF 251 (274)
Q Consensus 227 -----------~----~~HqAGsDs~lT~~~F~~l~~~~~ 251 (274)
. ..+-|..|++.+.+++-+|.+..-
T Consensus 157 k~~~~s~W~~~~L~~~q~~YAa~Da~~~~~L~~~L~~~L~ 196 (208)
T 2e6m_A 157 KSIRCSNWSNFPLTEDQKLYAATDAYAGLIIYQKLGNLGD 196 (208)
T ss_dssp HHHHTSCTTSSSCCHHHHHHHHHHHHHHHHHHHHHHTCC-
T ss_pred CCeeeCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 0 123388999999999999887654
No 32
>1dny_A Non-ribosomal peptide synthetase peptidyl carrier protein; four-helix bundle, modular enzyme, domain, flexible region; NMR {Brevibacillus brevis} SCOP: a.28.1.2 PDB: 2gdw_A 2gdx_A 2gdy_A 2k2q_A
Probab=35.33 E-value=39 Score=24.07 Aligned_cols=35 Identities=20% Similarity=0.311 Sum_probs=27.8
Q ss_pred HHHHcCCccCC---CCccchhhHHHHHHHHHHHHHHhc
Q 023991 217 LAELLEVERVG---ICHQAGSDSLLTASTFRKLKENFF 251 (274)
Q Consensus 217 la~~L~~~r~~---~~HqAGsDs~lT~~~F~~l~~~~~ 251 (274)
+++.|+++.++ ..-+.|.||+.+.+.-.+|++.+.
T Consensus 23 ~~~vL~~~~i~~~~~Ff~lGgdSL~a~~l~~~l~~~~g 60 (91)
T 1dny_A 23 WERVLGVSGIGILDNFFQIGGHSLKAMAVAAQVHREYQ 60 (91)
T ss_dssp HHHHHTCSSCCSSCCTTSSCCSSHHHHHHHHHHHHHCC
T ss_pred HHHHhCCCCCCCCCCHHHcCCCHHHHHHHHHHHHHHHC
Confidence 46778887654 345899999999999999988754
No 33
>4g3h_A Arginase (ROCF); rossmann fold, hydrolytic enzyme, manganous ION BI hydrolysis, hydrolase; 2.20A {Helicobacter pylori}
Probab=33.20 E-value=68 Score=28.90 Aligned_cols=64 Identities=16% Similarity=0.211 Sum_probs=43.7
Q ss_pred EcCcccHHHHHHHHHHHhhcCC--eeeEec------ccccccccCCCCCCCCHHHHHHHHHhccc--ccceeeeeee
Q 023991 14 EVWSDNLELEFDLIRKIVDDYP--YVAMDT------EFPGIALRPVGSFKSSYEYHYQTLKSNVD--MLKLIQLGLT 80 (274)
Q Consensus 14 eVw~~Nf~~e~~~I~~~i~~~~--fIAiDt------Ef~Gl~~~~~~~~~~t~~~rY~~lr~nv~--~~~iiQlGlt 80 (274)
+| +.++++.+..+++.+...+ ||++|+ .+||+..... ..-+..+--..+|.-.+ ..+++-+.|+
T Consensus 207 ei-~~g~~~v~~~~~~~l~~~~~vylS~DiDvLDpa~aPgtgtP~p--gGlt~~e~~~il~~l~~~~~~~vvg~Div 280 (330)
T 4g3h_A 207 AI-RENMQEVVQKTKESLKAVDIIYLSLDLDIMDGKLFTSTGVREN--NGLSFDELKQLLGLLLESFKDRLKAVEVT 280 (330)
T ss_dssp HH-HHCHHHHHHHHHHHHTTCSEEEEEEEGGGBCTTTCCSSSSCCS--SCBCHHHHHHHHHHHHHHTTTTEEEEEEE
T ss_pred Hh-hcCHHHHHHHHHHHhcCCCeEEEEEecCcCChhhCCCCCCCCC--CCCCHHHHHHHHHHHHhhCCCCEEEEEEE
Confidence 44 5667777888888887766 999998 5588765422 23467777777777666 5566655555
No 34
>1vk0_A Hypothetical protein; homohexamer, AT5G06450, struc genomics, protein structure initiative, center for eukaryot structural genomics, CESG; 2.10A {Arabidopsis thaliana} SCOP: c.55.3.5 PDB: 2q3s_A
Probab=31.53 E-value=82 Score=26.33 Aligned_cols=82 Identities=15% Similarity=0.108 Sum_probs=56.3
Q ss_pred cccCCcceEEeccchhHHHHHHHhCCCCCCCChHHHHHHHHhhCCccccchhhhHh-hhc---ccCcHHHHHHH-cCCcc
Q 023991 151 VLSDSMHWVTFHSGYDFGYLLKLLTCQNLPDTQVEFFNLIRIYFPTVYDIKHLMKF-CNS---LHGGLNKLAEL-LEVER 225 (274)
Q Consensus 151 ~~~~~v~wvtf~g~yD~~yL~k~l~~~~LP~~~~~F~~~l~~~FP~iyDtK~la~~-~~~---l~~~L~~la~~-L~~~r 225 (274)
+.++++..|.+....|+..|.+.+ |- . ..+++|+..+|.. ++. -.-||..+++. ||++-
T Consensus 104 L~d~~i~Kvg~~~~~D~~~L~~~~-g~-~--------------~~~~~Dl~~la~~~lg~~~~~~~gL~~Lv~~~lg~~l 167 (206)
T 1vk0_A 104 FASKFVTFVGVQIEEDLDLLRENH-GL-V--------------IRNAINVGKLAAEARGTLVLEFLGTRELAHRVLWSDL 167 (206)
T ss_dssp HTCSSSEEEESSCHHHHHHHHHHH-CC-C--------------CSSEEEHHHHHHHHHTCGGGGGCCHHHHHHHHHCCCC
T ss_pred hcCCCceEEEeccHHHHHHHHHhc-CC-C--------------cCCeeeHHHHHHHHcCCCCCCCccHHHHHHHHhCCcC
Confidence 346788889998899999887764 31 1 1369999877644 432 34589988764 45431
Q ss_pred -C--------------CCCccchhhHHHHHHHHHHHHH
Q 023991 226 -V--------------GICHQAGSDSLLTASTFRKLKE 248 (274)
Q Consensus 226 -~--------------~~~HqAGsDs~lT~~~F~~l~~ 248 (274)
. .+.+-|..|++....+|.+|.+
T Consensus 168 K~k~~~~SdW~~pLs~~Qi~YAA~Da~~l~~l~~~L~~ 205 (206)
T 1vk0_A 168 GQLDSIEAKWEKAGPEEQLEAAAIEGWLIVNVWDQLSD 205 (206)
T ss_dssp HHHHHHHHTGGGSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCcccCCCCCcCCHHHHHHHHHHHHHHHHHHHHHHc
Confidence 0 1234489999999999999864
No 35
>2fi0_A Conserved domain protein; structural genomics,streptococcus pneumoniae, PSI, protein S initiative; 2.10A {Streptococcus pneumoniae} SCOP: a.248.1.1
Probab=24.55 E-value=52 Score=23.30 Aligned_cols=37 Identities=14% Similarity=0.191 Sum_probs=28.2
Q ss_pred chhHHHHHHHcCCCccc-----------------hhhcCCchhHHHHHHHHhcc
Q 023991 114 ANDSIELLKQSGINFTK-----------------NNEIGIDAMRFGEFMMSSGI 150 (274)
Q Consensus 114 ~~~Si~fL~~~GfDFnk-----------------~~~~GI~~~~f~e~l~~Sgl 150 (274)
-|++++.|.+.||++=. ...+||+...+-+.|-..|.
T Consensus 22 ~P~~~~vl~~~G~~~l~~p~~~~~~g~~~TL~~aa~~~gid~d~l~~~L~~~g~ 75 (81)
T 2fi0_A 22 HPEVLEILVELGFKPLANPLMRNTVGRKVSLKQGSKLAGTPMDKIVRTLEANGY 75 (81)
T ss_dssp CGGGHHHHTTTTCGGGGSHHHHTTHHHHCBHHHHHHHHTCCHHHHHHHHHHTTC
T ss_pred CHHHHHHHHHcCCccccCcHHHhhhcccCcHHHHHHHcCCCHHHHHHHHHHcCC
Confidence 48899999999988752 24578888888877776664
No 36
>2e6m_A Werner syndrome ATP-dependent helicase homolog; APO form, hydrolase; 2.00A {Mus musculus} PDB: 2e6l_A 2fby_A 2fbv_A 2fbx_A 2fbt_A 2fc0_A*
Probab=23.71 E-value=82 Score=25.63 Aligned_cols=21 Identities=33% Similarity=0.382 Sum_probs=17.3
Q ss_pred HHHHHhhcCCeeeEecccccc
Q 023991 26 LIRKIVDDYPYVAMDTEFPGI 46 (274)
Q Consensus 26 ~I~~~i~~~~fIAiDtEf~Gl 46 (274)
.+.+.+.+.+.|++|+|..+.
T Consensus 32 ~~~~~l~~~~~v~~D~E~~~~ 52 (208)
T 2e6m_A 32 DISMRLSDGDVVGFDMEWPPI 52 (208)
T ss_dssp HHHHHCCTTCEEEEEEECCC-
T ss_pred HHHHHhccCCEEEEEeecCCC
Confidence 677778888999999998775
No 37
>2cev_A Protein (arginase); enzyme, hydrolase, arginine hydrolysis, nitrogen metabolism, manganese metalloenzyme; 2.15A {Bacillus caldovelox} SCOP: c.42.1.1 PDB: 1cev_A 3cev_A* 4cev_A 5cev_A*
Probab=22.48 E-value=1.2e+02 Score=26.59 Aligned_cols=65 Identities=9% Similarity=0.045 Sum_probs=40.7
Q ss_pred EcCcccHHHHHHHHHHHhh-cCC--eeeEec------ccccccccCCCCCCCCHHHHHHHHHhcccccceeeeeee
Q 023991 14 EVWSDNLELEFDLIRKIVD-DYP--YVAMDT------EFPGIALRPVGSFKSSYEYHYQTLKSNVDMLKLIQLGLT 80 (274)
Q Consensus 14 eVw~~Nf~~e~~~I~~~i~-~~~--fIAiDt------Ef~Gl~~~~~~~~~~t~~~rY~~lr~nv~~~~iiQlGlt 80 (274)
+|++.+.++.+..+.+.+. ..+ ||++|. ..||+.... +..-+..+--+.+|.-.+..+++-+.|+
T Consensus 197 ~i~~~g~~~~~~~~l~~~~~~~~~vylSiDiDvlDp~~aPgtgtp~--pgGlt~~e~~~~l~~l~~~~~vvg~Div 270 (299)
T 2cev_A 197 EVDRLGMTRVMEETIAYLKERTDGVHLSLDLDGLDPSDAPGVGTPV--IGGLTYRESHLAMEMLAEAQIITSAEFV 270 (299)
T ss_dssp HHHHHCHHHHHHHHHHHHHTTCSEEEEEEEGGGBCTTTCCCCSSCC--SSCBCHHHHHHHHHHHHHHTCEEEEEEE
T ss_pred HHhhcCHHHHHHHHHHHhccCCCeEEEEEccCccChhhcCCCCCCC--CCCCCHHHHHHHHHHHhcCCCEEEEEEE
Confidence 4445555566667777776 344 999997 566765432 2234677777777776665666655555
No 38
>3pv8_A DNA polymerase I; DNA polymerase I, protein-DNA complex, thymine-adenine, CLOS conformation; HET: DNA 2DT D3T; 1.52A {Geobacillus kaustophilus} PDB: 3px0_A* 3px4_A* 3px6_A* 3thv_A* 3ti0_A* 4dse_A* 4dsf_A* 4ds4_A* 4dqp_A* 4dqi_A* 4ds5_A* 4e0d_A* 4dqr_A* 4dqq_A* 3tan_A* 3tap_A* 3taq_A* 3tar_A* 4dqs_A* 3hp6_A* ...
Probab=20.49 E-value=1.9e+02 Score=28.21 Aligned_cols=83 Identities=10% Similarity=-0.045 Sum_probs=57.4
Q ss_pred cCCcceEEeccchhHHHHHHHhCCCCCCCChHHHHHHHHhhCCccccchhhhHhhhc-c-cCcHHHHHHHc-CCcc----
Q 023991 153 SDSMHWVTFHSGYDFGYLLKLLTCQNLPDTQVEFFNLIRIYFPTVYDIKHLMKFCNS-L-HGGLNKLAELL-EVER---- 225 (274)
Q Consensus 153 ~~~v~wvtf~g~yD~~yL~k~l~~~~LP~~~~~F~~~l~~~FP~iyDtK~la~~~~~-l-~~~L~~la~~L-~~~r---- 225 (274)
++++.-|.++.-||+..|.+. |-.+| +.++||...+..+.. . .-+|..||+.. +..-
T Consensus 79 d~~i~KV~hn~K~Dl~vL~~~--Gi~l~--------------g~~fDTmLAAYLL~p~~~~~~L~~La~~yLg~~l~~~e 142 (592)
T 3pv8_A 79 DETKKKSMFDSKRAAVALKWK--GIELC--------------GVSFDLLLAAYLLDPAQGVDDVAAAAKMKQYEAVRPDE 142 (592)
T ss_dssp CTTSEEEESSHHHHHHHHHHT--TCCCC--------------CEEEEHHHHHHHHCGGGCCCSHHHHHGGGTCCSSCCHH
T ss_pred CCCCeEEEechHHHHHHHHHc--CCCCC--------------CccchHHHHHHHcCCCCCCCCHHHHHHHHcCCCCchHH
Confidence 456778888888998877653 55544 257899988877743 2 45899998764 4321
Q ss_pred --CCC------------CccchhhHHHHHHHHHHHHHHhc
Q 023991 226 --VGI------------CHQAGSDSLLTASTFRKLKENFF 251 (274)
Q Consensus 226 --~~~------------~HqAGsDs~lT~~~F~~l~~~~~ 251 (274)
.|. .+-|+.|+..|.+.+-+|...+.
T Consensus 143 e~~gkg~~~~~~~~e~~~~YAa~DA~~l~~L~~~L~~~L~ 182 (592)
T 3pv8_A 143 AVYGKGAKRAVPDEPVLAEHLVRKAAAIWELERPFLDELR 182 (592)
T ss_dssp HHHCSGGGCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhcCccccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 111 23478899999999988887664
No 39
>4dfk_A DNA polymerase I, thermostable; DNA polymerase, transferase-DNA complex; HET: DNA DOC 0L5; 1.65A {Thermus aquaticus} PDB: 1jxe_A* 3ktq_A* 3lwl_A* 3lwm_A* 3m8s_A* 3m8r_A* 3oju_A* 3rr7_A* 3rr8_A* 3rrg_A* 3ojs_A* 3rtv_A* 3sv3_A* 3sv4_A* 3syz_A* 3sz2_A* 3t3f_A* 4df4_A* 4df8_A* 4dfj_A* ...
Probab=20.39 E-value=1.1e+02 Score=29.46 Aligned_cols=52 Identities=17% Similarity=0.095 Sum_probs=40.9
Q ss_pred ccccchhhhHhhhcccCcHHHHHHHcCCccCCCCccchhhHHHHHHHHHHHHHHh
Q 023991 196 TVYDIKHLMKFCNSLHGGLNKLAELLEVERVGICHQAGSDSLLTASTFRKLKENF 250 (274)
Q Consensus 196 ~iyDtK~la~~~~~l~~~L~~la~~L~~~r~~~~HqAGsDs~lT~~~F~~l~~~~ 250 (274)
.++||..++..+..-+-+|..|++.+... . .|.|..|+..|.+.|.+|...+
T Consensus 77 ~~fDT~laAyLL~p~~~~L~~La~~yl~~-~--gk~a~~DA~~t~~L~~~L~~~L 128 (540)
T 4dfk_A 77 PGDDPMLLAYLLDPSNTTPEGVARRYGGE-W--TEEAGERAALSERLFANLWGRL 128 (540)
T ss_dssp BCCCHHHHHHHHCTTCCCHHHHHHHHTSC-C--CSCHHHHHHHHHHHHHHHHHHT
T ss_pred cceeHHHHHHHhCCCCCCHHHHHHHHhhh-h--ccchHHHHHHHHHHHHHHHHHH
Confidence 46899988888732267999999877533 2 3568899999999999998877
No 40
>1dp7_P MHC class II transcription factor HRFX1; winged helix, protein- DNA conovel mode of DNA recognition, transcription/DNA complex; HET: DNA BRU; 1.50A {Synthetic} SCOP: a.4.5.20
Probab=20.32 E-value=61 Score=23.05 Aligned_cols=21 Identities=29% Similarity=0.298 Sum_probs=19.0
Q ss_pred CCCCCChHHHHHHHHhhCCcc
Q 023991 177 QNLPDTQVEFFNLIRIYFPTV 197 (274)
Q Consensus 177 ~~LP~~~~~F~~~l~~~FP~i 197 (274)
.--|-+...|-+.++..||.+
T Consensus 34 ~~~pl~~a~FGK~ir~~FP~l 54 (76)
T 1dp7_P 34 KLEPVNAASFGKLIRSVFMGL 54 (76)
T ss_dssp TCCCCCHHHHHHHHHHHSTTC
T ss_pred CCccCCHHHHHHHHHHHCCCc
Confidence 566889999999999999986
Done!