BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 023992
(274 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2K4T|A Chain A, Solution Structure Of Human Vdac-1 In Ldao Micelles
Length = 291
Score = 57.8 bits (138), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 60/281 (21%), Positives = 119/281 (42%), Gaps = 14/281 (4%)
Query: 5 PAPFSDVGKRAKDLLNKDYDFGH-KFTLSVPSSTGLGLSATGLKKDEI--FIGDINSVYK 61
P ++D+GK A+D+ K Y FG K L S GL +++G E G + + Y+
Sbjct: 4 PPTYADLGKSARDVFTKGYGFGLIKLDLKTKSENGLEFTSSGSANTETTKVTGSLETKYR 63
Query: 62 --SGNTTVDVKVDTYSSVSTKVTMVDILPSTKAALSFR---IPD--HKSGKLDLQYLHPH 114
T K +T +++ T++T+ D L + L+F P+ K+ K+ Y H
Sbjct: 64 WTEYGLTFTEKWNTDNTLGTEITVEDQL-ARGLKLTFDSSFSPNTGKKNAKIKTGYKREH 122
Query: 115 AAIDSSIGLN-PTPLLELSATIGSKELVLGGEVGFDTASASFIKYTAGIGLNKPDFSAAL 173
+ + + P + + +G + + G ++ F+TA + + +G +F
Sbjct: 123 INLGCDMDFDIAGPSIRGALVLGYEGWLAGYQMNFETAKSRVTQSNFAVGYKTDEFQLHT 182
Query: 174 LLADKGQALKASYIHAVDPFTSVAAEMTHRFSTYQNSFTIGSSHLVDPLTLVKTRLSDGG 233
+ D G S V+ A + F I + + +DP ++++
Sbjct: 183 NVND-GTEFGGSIYQKVNKKLETAVNLAWTAGNSNTRFGIAAKYQIDPDACFSAKVNNSS 241
Query: 234 KFAVQFQREWRPKSLVTVSAEYDSKAINSAP-KMGLAIALK 273
+ + + +P +T+SA D K +N+ K+GL + +
Sbjct: 242 LIGLGYTQTLKPGIKLTLSALLDGKNVNAGGHKLGLGLEFQ 282
>pdb|2JK4|A Chain A, Structure Of The Human Voltage-Dependent Anion Channel
Length = 294
Score = 57.4 bits (137), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 60/281 (21%), Positives = 119/281 (42%), Gaps = 14/281 (4%)
Query: 5 PAPFSDVGKRAKDLLNKDYDFGH-KFTLSVPSSTGLGLSATGLKKDEI--FIGDINSVYK 61
P ++D+GK A+D+ K Y FG K L S GL +++G E G + + Y+
Sbjct: 7 PPTYADLGKSARDVFTKGYGFGLIKLDLKTKSENGLEFTSSGSANTETTKVTGSLETKYR 66
Query: 62 --SGNTTVDVKVDTYSSVSTKVTMVDILPSTKAALSFR---IPD--HKSGKLDLQYLHPH 114
T K +T +++ T++T+ D L + L+F P+ K+ K+ Y H
Sbjct: 67 WTEYGLTFTEKWNTDNTLGTEITVEDQL-ARGLKLTFDSSFSPNTGKKNAKIKTGYKREH 125
Query: 115 AAIDSSIGLN-PTPLLELSATIGSKELVLGGEVGFDTASASFIKYTAGIGLNKPDFSAAL 173
+ + + P + + +G + + G ++ F+TA + + +G +F
Sbjct: 126 INLGCDMDFDIAGPSIRGALVLGYEGWLAGYQMNFETAKSRVTQSNFAVGYKTDEFQLHT 185
Query: 174 LLADKGQALKASYIHAVDPFTSVAAEMTHRFSTYQNSFTIGSSHLVDPLTLVKTRLSDGG 233
+ D G S V+ A + F I + + +DP ++++
Sbjct: 186 NVND-GTEFGGSIYQKVNKKLETAVNLAWTAGNSNTRFGIAAKYQIDPDACFSAKVNNSS 244
Query: 234 KFAVQFQREWRPKSLVTVSAEYDSKAINSAP-KMGLAIALK 273
+ + + +P +T+SA D K +N+ K+GL + +
Sbjct: 245 LIGLGYTQTLKPGIKLTLSALLDGKNVNAGGHKLGLGLEFQ 285
>pdb|3EMN|X Chain X, The Crystal Structure Of Mouse Vdac1 At 2.3 A Resolution
Length = 295
Score = 56.6 bits (135), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 60/281 (21%), Positives = 119/281 (42%), Gaps = 14/281 (4%)
Query: 5 PAPFSDVGKRAKDLLNKDYDFGH-KFTLSVPSSTGLGLSATGLKKDEI--FIGDINSVYK 61
P ++D+GK A+D+ K Y FG K L S GL +++G E G + + Y+
Sbjct: 16 PPTYADLGKSARDVFTKGYGFGLIKLDLKTKSENGLEFTSSGSANTETTKVNGSLETKYR 75
Query: 62 --SGNTTVDVKVDTYSSVSTKVTMVDILPSTKAALSFR---IPD--HKSGKLDLQYLHPH 114
T K +T +++ T++T+ D L + L+F P+ K+ K+ Y H
Sbjct: 76 WTEYGLTFTEKWNTDNTLGTEITVEDQL-ARGLKLTFDSSFSPNTGKKNAKIKTGYKREH 134
Query: 115 AAIDSSIGLN-PTPLLELSATIGSKELVLGGEVGFDTASASFIKYTAGIGLNKPDFSAAL 173
+ + + P + + +G + + G ++ F+T+ + + +G +F
Sbjct: 135 INLGCDVDFDIAGPSIRGALVLGYEGWLAGYQMNFETSKSRVTQSNFAVGYKTDEFQLHT 194
Query: 174 LLADKGQALKASYIHAVDPFTSVAAEMTHRFSTYQNSFTIGSSHLVDPLTLVKTRLSDGG 233
+ D G S V+ A + F I + + VDP ++++
Sbjct: 195 NVND-GTEFGGSIYQKVNKKLETAVNLAWTAGNSNTRFGIAAKYQVDPDACFSAKVNNSS 253
Query: 234 KFAVQFQREWRPKSLVTVSAEYDSKAINSAP-KMGLAIALK 273
+ + + +P +T+SA D K +N+ K+GL + +
Sbjct: 254 LIGLGYTQTLKPGIKLTLSALLDGKNVNAGGHKLGLGLEFQ 294
>pdb|4F2D|A Chain A, Crystal Structure Of Escherichia Coli L-Arabinose
Isomerase (Ecai) Complexed With Ribitol
pdb|4F2D|B Chain B, Crystal Structure Of Escherichia Coli L-Arabinose
Isomerase (Ecai) Complexed With Ribitol
pdb|4F2D|C Chain C, Crystal Structure Of Escherichia Coli L-Arabinose
Isomerase (Ecai) Complexed With Ribitol
Length = 500
Score = 31.6 bits (70), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 28/71 (39%), Gaps = 22/71 (30%)
Query: 204 FSTYQNSFTIGSSHLVDPLTLVKTRLSDGGKFAVQFQREWRPKSLVTVSAEYDSKAINSA 263
F Y+ F IGS HL P TL + VT AE+ A+N+
Sbjct: 4 FDNYEVWFVIGSQHLYGPETLRQ----------------------VTQHAEHVVNALNTE 41
Query: 264 PKMGLAIALKP 274
K+ + LKP
Sbjct: 42 AKLPCKLVLKP 52
>pdb|2AJT|A Chain A, Crystal Structure Of L-Arabinose Isomerase From E.Coli
pdb|2AJT|B Chain B, Crystal Structure Of L-Arabinose Isomerase From E.Coli
pdb|2AJT|C Chain C, Crystal Structure Of L-Arabinose Isomerase From E.Coli
pdb|2HXG|A Chain A, Crystal Structure Of Mn2+ Bound Ecai
pdb|2HXG|B Chain B, Crystal Structure Of Mn2+ Bound Ecai
pdb|2HXG|C Chain C, Crystal Structure Of Mn2+ Bound Ecai
Length = 500
Score = 31.2 bits (69), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 28/71 (39%), Gaps = 22/71 (30%)
Query: 204 FSTYQNSFTIGSSHLVDPLTLVKTRLSDGGKFAVQFQREWRPKSLVTVSAEYDSKAINSA 263
F Y+ F IGS HL P TL + VT AE+ A+N+
Sbjct: 4 FDNYEVWFVIGSQHLYGPETLRQ----------------------VTQHAEHVVNALNTE 41
Query: 264 PKMGLAIALKP 274
K+ + LKP
Sbjct: 42 AKLPCKLVLKP 52
>pdb|3FXY|A Chain A, Acidic Mammalian Chinase, Catalytic Domain
pdb|3FXY|B Chain B, Acidic Mammalian Chinase, Catalytic Domain
pdb|3FXY|C Chain C, Acidic Mammalian Chinase, Catalytic Domain
pdb|3FXY|D Chain D, Acidic Mammalian Chinase, Catalytic Domain
pdb|3FY1|A Chain A, The Acidic Mammalian Chitinase Catalytic Domain In Complex
With Methylallosamidin
pdb|3FY1|B Chain B, The Acidic Mammalian Chitinase Catalytic Domain In Complex
With Methylallosamidin
pdb|3RM4|A Chain A, Amcase In Complex With Compound 1
pdb|3RM4|B Chain B, Amcase In Complex With Compound 1
pdb|3RM8|A Chain A, Amcase In Complex With Compound 2
pdb|3RM8|B Chain B, Amcase In Complex With Compound 2
pdb|3RM9|A Chain A, Amcase In Complex With Compound 3
pdb|3RM9|B Chain B, Amcase In Complex With Compound 3
pdb|3RME|A Chain A, Amcase In Complex With Compound 5
pdb|3RME|B Chain B, Amcase In Complex With Compound 5
Length = 395
Score = 30.4 bits (67), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 22/38 (57%)
Query: 8 FSDVGKRAKDLLNKDYDFGHKFTLSVPSSTGLGLSATG 45
+ D G A+ L+ +GH F LS PS+TG+G +G
Sbjct: 229 WKDNGAPAEKLIVGFPTYGHNFILSNPSNTGIGAPTSG 266
>pdb|2YBT|A Chain A, Crystal Structure Of Human Acidic Chitinase In Complex
With Bisdionin C
pdb|2YBT|B Chain B, Crystal Structure Of Human Acidic Chitinase In Complex
With Bisdionin C
pdb|2YBT|C Chain C, Crystal Structure Of Human Acidic Chitinase In Complex
With Bisdionin C
pdb|2YBT|D Chain D, Crystal Structure Of Human Acidic Chitinase In Complex
With Bisdionin C
pdb|2YBT|E Chain E, Crystal Structure Of Human Acidic Chitinase In Complex
With Bisdionin C
pdb|2YBT|F Chain F, Crystal Structure Of Human Acidic Chitinase In Complex
With Bisdionin C
pdb|2YBU|A Chain A, Crystal Structure Of Human Acidic Chitinase In Complex
With Bisdionin F
pdb|2YBU|B Chain B, Crystal Structure Of Human Acidic Chitinase In Complex
With Bisdionin F
pdb|2YBU|C Chain C, Crystal Structure Of Human Acidic Chitinase In Complex
With Bisdionin F
pdb|2YBU|D Chain D, Crystal Structure Of Human Acidic Chitinase In Complex
With Bisdionin F
pdb|2YBU|E Chain E, Crystal Structure Of Human Acidic Chitinase In Complex
With Bisdionin F
pdb|2YBU|F Chain F, Crystal Structure Of Human Acidic Chitinase In Complex
With Bisdionin F
Length = 381
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 22/38 (57%)
Query: 8 FSDVGKRAKDLLNKDYDFGHKFTLSVPSSTGLGLSATG 45
+ D G A+ L+ +GH F LS PS+TG+G +G
Sbjct: 233 WKDNGAPAEKLIVGFPTYGHNFILSNPSNTGIGAPTSG 270
>pdb|3OTP|A Chain A, Crystal Structure Of The Degp Dodecamer With A Model
Substrate
pdb|3OTP|B Chain B, Crystal Structure Of The Degp Dodecamer With A Model
Substrate
pdb|3OTP|C Chain C, Crystal Structure Of The Degp Dodecamer With A Model
Substrate
pdb|3OTP|D Chain D, Crystal Structure Of The Degp Dodecamer With A Model
Substrate
pdb|3OTP|E Chain E, Crystal Structure Of The Degp Dodecamer With A Model
Substrate
pdb|3OTP|F Chain F, Crystal Structure Of The Degp Dodecamer With A Model
Substrate
Length = 459
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 19/25 (76%)
Query: 211 FTIGSSHLVDPLTLVKTRLSDGGKF 235
+ + ++H+VD T++K +LSDG KF
Sbjct: 99 YVVTNNHVVDNATVIKVQLSDGRKF 123
>pdb|4A8D|A Chain A, Degp Dodecamer With Bound Omp
pdb|4A8D|B Chain B, Degp Dodecamer With Bound Omp
pdb|4A8D|C Chain C, Degp Dodecamer With Bound Omp
pdb|4A8D|D Chain D, Degp Dodecamer With Bound Omp
pdb|4A8D|E Chain E, Degp Dodecamer With Bound Omp
pdb|4A8D|F Chain F, Degp Dodecamer With Bound Omp
pdb|4A8D|G Chain G, Degp Dodecamer With Bound Omp
pdb|4A8D|H Chain H, Degp Dodecamer With Bound Omp
pdb|4A8D|I Chain I, Degp Dodecamer With Bound Omp
pdb|4A8D|J Chain J, Degp Dodecamer With Bound Omp
pdb|4A8D|K Chain K, Degp Dodecamer With Bound Omp
pdb|4A8D|L Chain L, Degp Dodecamer With Bound Omp
Length = 448
Score = 30.0 bits (66), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 19/25 (76%)
Query: 211 FTIGSSHLVDPLTLVKTRLSDGGKF 235
+ + ++H+VD T++K +LSDG KF
Sbjct: 99 YVVTNNHVVDNATVIKVQLSDGRKF 123
>pdb|3MH4|A Chain A, Htra Proteases Are Activated By A Conserved Mechanism That
Can Be Triggered By Distinct Molecular Cues
pdb|3MH4|B Chain B, Htra Proteases Are Activated By A Conserved Mechanism That
Can Be Triggered By Distinct Molecular Cues
Length = 456
Score = 30.0 bits (66), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 19/25 (76%)
Query: 211 FTIGSSHLVDPLTLVKTRLSDGGKF 235
+ + ++H+VD T++K +LSDG KF
Sbjct: 99 YVVTNNHVVDNATVIKVQLSDGRKF 123
>pdb|2ZLE|A Chain A, Cryo-Em Structure Of Degp12OMP
pdb|2ZLE|B Chain B, Cryo-Em Structure Of Degp12OMP
pdb|2ZLE|C Chain C, Cryo-Em Structure Of Degp12OMP
pdb|2ZLE|E Chain E, Cryo-Em Structure Of Degp12OMP
pdb|2ZLE|F Chain F, Cryo-Em Structure Of Degp12OMP
pdb|2ZLE|G Chain G, Cryo-Em Structure Of Degp12OMP
pdb|2ZLE|H Chain H, Cryo-Em Structure Of Degp12OMP
pdb|2ZLE|I Chain I, Cryo-Em Structure Of Degp12OMP
pdb|2ZLE|J Chain J, Cryo-Em Structure Of Degp12OMP
pdb|2ZLE|K Chain K, Cryo-Em Structure Of Degp12OMP
pdb|2ZLE|L Chain L, Cryo-Em Structure Of Degp12OMP
pdb|2ZLE|M Chain M, Cryo-Em Structure Of Degp12OMP
Length = 448
Score = 30.0 bits (66), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 19/25 (76%)
Query: 211 FTIGSSHLVDPLTLVKTRLSDGGKF 235
+ + ++H+VD T++K +LSDG KF
Sbjct: 99 YVVTNNHVVDNATVIKVQLSDGRKF 123
>pdb|3MH5|A Chain A, Htra Proteases Are Activated By A Conserved Mechanism That
Can Be Triggered By Distinct Molecular Cues
pdb|3MH5|B Chain B, Htra Proteases Are Activated By A Conserved Mechanism That
Can Be Triggered By Distinct Molecular Cues
pdb|3MH6|A Chain A, Htra Proteases Are Activated By A Conserved Mechanism That
Can Be Triggered By Distinct Molecular Cues
Length = 456
Score = 30.0 bits (66), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 19/25 (76%)
Query: 211 FTIGSSHLVDPLTLVKTRLSDGGKF 235
+ + ++H+VD T++K +LSDG KF
Sbjct: 99 YVVTNNHVVDNATVIKVQLSDGRKF 123
>pdb|1KY9|A Chain A, Crystal Structure Of Degp (Htra)
pdb|1KY9|B Chain B, Crystal Structure Of Degp (Htra)
pdb|3OU0|A Chain A, Re-Refined 3cs0
Length = 448
Score = 30.0 bits (66), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 19/25 (76%)
Query: 211 FTIGSSHLVDPLTLVKTRLSDGGKF 235
+ + ++H+VD T++K +LSDG KF
Sbjct: 99 YVVTNNHVVDNATVIKVQLSDGRKF 123
>pdb|3MH7|A Chain A, Htra Proteases Are Activated By A Conserved Mechanism That
Can Be Triggered By Distinct Molecular Cues
Length = 456
Score = 30.0 bits (66), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 19/25 (76%)
Query: 211 FTIGSSHLVDPLTLVKTRLSDGGKF 235
+ + ++H+VD T++K +LSDG KF
Sbjct: 99 YVVTNNHVVDNATVIKVQLSDGRKF 123
>pdb|3CS0|A Chain A, Crystal Structure Of Degp24
Length = 448
Score = 30.0 bits (66), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 19/25 (76%)
Query: 211 FTIGSSHLVDPLTLVKTRLSDGGKF 235
+ + ++H+VD T++K +LSDG KF
Sbjct: 99 YVVTNNHVVDNATVIKVQLSDGRKF 123
>pdb|2ZXH|A Chain A, Structure Of Aquifex Aeolicus Gida In The Form I Crystal
pdb|2ZXH|B Chain B, Structure Of Aquifex Aeolicus Gida In The Form I Crystal
pdb|2ZXI|A Chain A, Structure Of Aquifex Aeolicus Gida In The Form Ii Crystal
pdb|2ZXI|B Chain B, Structure Of Aquifex Aeolicus Gida In The Form Ii Crystal
pdb|2ZXI|C Chain C, Structure Of Aquifex Aeolicus Gida In The Form Ii Crystal
pdb|2ZXI|D Chain D, Structure Of Aquifex Aeolicus Gida In The Form Ii Crystal
Length = 637
Score = 30.0 bits (66), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 37/94 (39%), Gaps = 12/94 (12%)
Query: 46 LKKDEIFIGDINSVYKSGNTTVDVKVDTYS-SVSTKVTMVDILPSTKAALSFRIPDHKSG 104
+K+ E I YKS +V V DT S SV+T +TM L K + +P
Sbjct: 493 VKELEREIEKWKEFYKSERVSVAVGGDTRSYSVATLMTMNYTLDDVKEKFGYEVPQ---- 548
Query: 105 KLDLQYLHPHAAIDSSIGLNPTPLLELSATIGSK 138
HP+ + I L P +E + K
Sbjct: 549 -------HPYVKEEVEIQLKYEPYIERERKLNEK 575
>pdb|4AIB|A Chain A, Crystal Structure Of Ornithine Decarboxylase From
Entamoeba Histolytica.
pdb|4AIB|B Chain B, Crystal Structure Of Ornithine Decarboxylase From
Entamoeba Histolytica.
pdb|4AIB|C Chain C, Crystal Structure Of Ornithine Decarboxylase From
Entamoeba Histolytica.
pdb|4AIB|D Chain D, Crystal Structure Of Ornithine Decarboxylase From
Entamoeba Histolytica
Length = 395
Score = 29.3 bits (64), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 32/69 (46%), Gaps = 10/69 (14%)
Query: 120 SIGLNPTP-LLELSATIGSKELVLGGEVGFDTASASFIKYTAGIGLNKPDFSAALLLADK 178
++ NP P L++L +G GFD AS + IK +G N D + +
Sbjct: 55 AVKCNPEPHLVKLLGELG---------CGFDCASLNEIKEVLDLGFNPEDITYSQTFKPY 105
Query: 179 GQALKASYI 187
Q ++AS++
Sbjct: 106 NQLIEASHL 114
>pdb|1NXQ|A Chain A, Crystal Structure Of R-Alcohol Dehydrogenase (Radh)
(Apoenyzme) From Lactobacillus Brevis
pdb|1ZK4|A Chain A, Structure Of R-specific Alcohol Dehydrogenase (wildtype)
From Lactobacillus Brevis In Complex With Acetophenone
And Nadp
Length = 251
Score = 27.3 bits (59), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 45/116 (38%), Gaps = 20/116 (17%)
Query: 25 FGHKFTLSVPSSTGLGLSATGLKKDEIFIGDIN-SVYKSGNTTV---------------- 67
FG + + + GLG S + E F+GD + Y + V
Sbjct: 119 FGTRLGIQRMKNKGLGASIINMSSIEGFVGDPSLGAYNASKGAVRIMSKSAALDCALKDY 178
Query: 68 DVKVDTYSSVSTKVTMVDILPSTKAALSFRIP---DHKSGKLDLQYLHPHAAIDSS 120
DV+V+T K +VD LP + A+S R H D+ Y+ + A + S
Sbjct: 179 DVRVNTVHPGYIKTPLVDDLPGAEEAMSQRTKTPMGHIGEPNDIAYICVYLASNES 234
>pdb|1ZJY|A Chain A, Structure Of R-Specific Alcohol Dehydrogenase (Mutant
G37d) From Lactobacillus Brevis In Complex With
Phenylethanol And Nadh
pdb|1ZJZ|A Chain A, Structure Of R-Specific Alcohol Dehydrogenase (Mutant
G37d) From Lactobacillus Brevis In Complex With
Phenylethanol And Nad
pdb|1ZK0|A Chain A, Structure Of R-Specific Alcohol Dehydrogenase (Mutant
G37d) From Lactobacillus Brevis In Complex With
Phenylethanol And Nadh
pdb|1ZK1|A Chain A, Structure Of R-Specific Alcohol Dehydrogenase (Mutant
G37d) From Lactobacillus Brevis In Complex With
Phenylethanol And Nad
pdb|1ZK2|A Chain A, Orthorhombic Crystal Structure Of The Apo-Form Of
R-Specific Alcohol Dehydrogenase (Mutant G37d) From
Lactobacillus Brevis
pdb|1ZK3|A Chain A, Triclinic Crystal Structure Of The Apo-Form Of R-Specific
Alcohol Dehydrogenase (Mutant G37d) From Lactobacillus
Brevis
pdb|1ZK3|B Chain B, Triclinic Crystal Structure Of The Apo-Form Of R-Specific
Alcohol Dehydrogenase (Mutant G37d) From Lactobacillus
Brevis
pdb|1ZK3|C Chain C, Triclinic Crystal Structure Of The Apo-Form Of R-Specific
Alcohol Dehydrogenase (Mutant G37d) From Lactobacillus
Brevis
pdb|1ZK3|D Chain D, Triclinic Crystal Structure Of The Apo-Form Of R-Specific
Alcohol Dehydrogenase (Mutant G37d) From Lactobacillus
Brevis
pdb|1ZK3|E Chain E, Triclinic Crystal Structure Of The Apo-Form Of R-Specific
Alcohol Dehydrogenase (Mutant G37d) From Lactobacillus
Brevis
pdb|1ZK3|F Chain F, Triclinic Crystal Structure Of The Apo-Form Of R-Specific
Alcohol Dehydrogenase (Mutant G37d) From Lactobacillus
Brevis
pdb|1ZK3|G Chain G, Triclinic Crystal Structure Of The Apo-Form Of R-Specific
Alcohol Dehydrogenase (Mutant G37d) From Lactobacillus
Brevis
pdb|1ZK3|H Chain H, Triclinic Crystal Structure Of The Apo-Form Of R-Specific
Alcohol Dehydrogenase (Mutant G37d) From Lactobacillus
Brevis
Length = 251
Score = 27.3 bits (59), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 36/90 (40%), Gaps = 17/90 (18%)
Query: 25 FGHKFTLSVPSSTGLGLSATGLKKDEIFIGDIN-SVYKSGNTTV---------------- 67
FG + + + GLG S + E F+GD + Y + V
Sbjct: 119 FGTRLGIQRMKNKGLGASIINMSSIEGFVGDPSLGAYNASKGAVRIMSKSAALDCALKDY 178
Query: 68 DVKVDTYSSVSTKVTMVDILPSTKAALSFR 97
DV+V+T K +VD LP + A+S R
Sbjct: 179 DVRVNTVHPGYIKTPLVDDLPGAEEAMSQR 208
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.131 0.369
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,991,004
Number of Sequences: 62578
Number of extensions: 325634
Number of successful extensions: 615
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 595
Number of HSP's gapped (non-prelim): 21
length of query: 274
length of database: 14,973,337
effective HSP length: 97
effective length of query: 177
effective length of database: 8,903,271
effective search space: 1575878967
effective search space used: 1575878967
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 51 (24.3 bits)