Query 023992
Match_columns 274
No_of_seqs 119 out of 582
Neff 8.3
Searched_HMMs 46136
Date Fri Mar 29 08:08:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023992.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023992hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd07306 Porin3_VDAC Voltage-de 100.0 1.5E-61 3.3E-66 427.8 40.7 268 5-273 1-276 (276)
2 KOG3126 Porin/voltage-dependen 100.0 8.4E-62 1.8E-66 419.7 31.3 272 2-274 1-281 (281)
3 cd07303 Porin3 Eukaryotic pori 100.0 3.7E-52 8E-57 366.9 35.3 259 7-272 1-273 (274)
4 PF01459 Porin_3: Eukaryotic p 100.0 7.9E-47 1.7E-51 333.2 38.5 260 4-267 1-273 (273)
5 cd07305 Porin3_Tom40 Transloca 100.0 1.3E-41 2.7E-46 301.1 33.4 261 3-273 2-279 (279)
6 KOG3296 Translocase of outer m 100.0 3.5E-29 7.5E-34 218.2 7.8 256 3-273 28-308 (308)
7 TIGR00989 3a0801s07tom40 mitoc 99.5 8.5E-13 1.8E-17 105.4 15.0 143 3-149 2-161 (161)
8 cd07305 Porin3_Tom40 Transloca 99.4 6.2E-10 1.4E-14 98.7 26.7 182 86-272 34-228 (279)
9 cd07306 Porin3_VDAC Voltage-de 98.9 3.2E-06 6.9E-11 74.9 26.4 173 37-215 88-273 (276)
10 PF01459 Porin_3: Eukaryotic p 98.9 1.2E-06 2.5E-11 77.2 23.1 161 103-271 54-224 (273)
11 cd07303 Porin3 Eukaryotic pori 98.5 0.00011 2.4E-09 65.1 24.7 130 137-271 88-219 (274)
12 TIGR00989 3a0801s07tom40 mitoc 97.7 0.0014 3E-08 52.9 12.7 49 155-203 106-161 (161)
13 KOG3126 Porin/voltage-dependen 97.5 0.025 5.4E-07 49.9 19.2 114 102-219 164-279 (281)
14 KOG3296 Translocase of outer m 95.9 0.0058 1.3E-07 54.3 2.8 132 139-272 106-255 (308)
15 PRK10716 long-chain fatty acid 93.8 4.7 0.0001 38.1 16.4 51 179-229 286-359 (435)
16 PF10082 DUF2320: Uncharacteri 90.7 13 0.00029 34.0 20.7 46 228-273 329-380 (381)
17 PF11383 DUF3187: Protein of u 89.5 16 0.00034 33.1 14.7 65 208-272 237-315 (319)
18 PF12519 DUF3722: Protein of u 89.0 1.1 2.4E-05 39.1 5.9 64 138-202 190-259 (260)
19 COG2067 FadL Long-chain fatty 86.5 14 0.0003 35.0 12.1 75 180-257 286-363 (440)
20 PF03349 Toluene_X: Outer memb 85.1 32 0.0007 31.9 16.9 79 180-258 270-352 (427)
21 COG2067 FadL Long-chain fatty 83.9 40 0.00087 32.0 13.9 21 80-100 212-232 (440)
22 PF04338 DUF481: Protein of un 80.5 18 0.0004 29.8 9.5 21 237-257 167-187 (210)
23 PF13609 Porin_4: Gram-negativ 78.5 45 0.00098 29.1 13.5 48 207-255 248-305 (311)
24 cd00342 gram_neg_porins Porins 76.7 53 0.0012 29.0 19.5 48 181-228 238-292 (329)
25 PF04357 DUF490: Family of unk 76.1 24 0.00053 32.1 9.7 60 182-242 316-378 (379)
26 cd00342 gram_neg_porins Porins 74.5 61 0.0013 28.6 17.1 73 184-257 205-297 (329)
27 PF11854 DUF3374: Protein of u 71.3 1.2E+02 0.0025 30.4 15.7 104 102-211 447-555 (637)
28 PF13557 Phenol_MetA_deg: Puta 70.8 64 0.0014 27.3 13.5 39 233-273 209-247 (248)
29 PF10082 DUF2320: Uncharacteri 70.0 88 0.0019 28.5 16.8 79 194-273 259-343 (381)
30 PF03349 Toluene_X: Outer memb 69.0 98 0.0021 28.6 15.3 30 226-255 263-292 (427)
31 PRK03761 LPS assembly outer me 61.7 1E+02 0.0022 31.5 11.3 98 137-245 612-732 (778)
32 PF14052 Caps_assemb_Wzi: Caps 61.0 73 0.0016 30.1 9.6 42 232-273 399-442 (443)
33 TIGR03519 Bac_Flav_fam_1 Bacte 57.4 1.4E+02 0.003 26.5 13.8 62 193-271 226-291 (292)
34 PRK04423 organic solvent toler 56.5 1.6E+02 0.0035 30.3 11.6 82 137-218 628-720 (798)
35 PF11383 DUF3187: Protein of u 55.6 1.6E+02 0.0035 26.7 15.5 68 181-253 239-315 (319)
36 TIGR03014 EpsL exopolysacchari 55.6 1.7E+02 0.0037 27.0 16.5 92 180-272 267-379 (381)
37 PF06178 KdgM: Oligogalacturon 52.4 61 0.0013 27.6 6.8 76 179-254 61-156 (218)
38 PRK10049 pgaA outer membrane p 50.5 2.9E+02 0.0063 28.1 15.1 39 231-269 716-756 (765)
39 PF03895 YadA_anchor: YadA-lik 49.1 88 0.0019 21.7 8.3 25 206-230 37-61 (78)
40 PRK10993 outer membrane protea 48.7 2.1E+02 0.0045 25.9 15.1 180 68-257 64-272 (314)
41 TIGR03014 EpsL exopolysacchari 48.5 2.3E+02 0.0049 26.3 12.4 26 234-259 254-279 (381)
42 PRK14574 hmsH outer membrane p 47.5 3.4E+02 0.0074 28.1 12.7 101 157-257 592-718 (822)
43 PF11751 DUF3308: Protein of u 47.2 1.9E+02 0.0042 25.1 13.4 50 211-260 211-260 (274)
44 PF13609 Porin_4: Gram-negativ 46.4 2E+02 0.0043 25.0 17.8 9 157-165 185-193 (311)
45 PF11924 DUF3442: Protein of u 45.4 2.2E+02 0.0047 25.2 13.8 134 137-273 105-248 (280)
46 PRK15318 intimin-like protein 44.2 3.5E+02 0.0077 27.3 14.5 38 137-174 167-205 (730)
47 TIGR03509 OMP_MtrB_PioB decahe 43.9 3.5E+02 0.0075 27.1 14.9 83 189-273 545-648 (649)
48 PRK10049 pgaA outer membrane p 43.2 3.8E+02 0.0081 27.3 13.8 103 155-257 533-661 (765)
49 PF13505 OMP_b-brl: Outer memb 42.6 1.5E+02 0.0033 22.6 11.2 25 233-257 131-155 (176)
50 PF13557 Phenol_MetA_deg: Puta 41.2 2.2E+02 0.0047 23.9 11.6 48 183-230 168-230 (248)
51 PF05420 BCSC_C: Cellulose syn 40.4 79 0.0017 29.0 6.0 42 180-221 298-341 (342)
52 PRK10716 long-chain fatty acid 37.8 3.6E+02 0.0077 25.5 16.6 48 210-257 288-349 (435)
53 PRK14574 hmsH outer membrane p 36.4 5.1E+02 0.011 26.9 16.8 40 231-270 773-814 (822)
54 PF04453 OstA_C: Organic solve 34.5 3.6E+02 0.0077 24.5 10.3 32 136-167 316-347 (388)
55 PF12519 DUF3722: Protein of u 34.0 3.3E+02 0.0071 24.0 11.8 63 193-257 191-259 (260)
56 PRK09980 ompL outer membrane p 26.8 4.1E+02 0.0089 22.9 9.4 28 232-259 71-99 (230)
57 COG4206 BtuB Outer membrane co 25.9 1.4E+02 0.0031 29.1 5.2 44 180-232 539-582 (608)
58 PF09381 Porin_OmpG: Outer mem 25.3 1.9E+02 0.0041 25.6 5.4 66 207-272 223-299 (301)
59 PF06178 KdgM: Oligogalacturon 23.9 4.5E+02 0.0098 22.3 18.0 18 28-45 26-43 (218)
60 TIGR01414 autotrans_barl outer 23.3 5.9E+02 0.013 23.5 11.7 64 194-257 335-411 (429)
61 PRK10159 outer membrane phosph 21.4 6.2E+02 0.013 23.0 19.5 65 209-273 266-350 (351)
62 cd01347 ligand_gated_channel T 21.4 6.9E+02 0.015 23.6 9.4 59 194-258 300-360 (635)
63 PRK10177 putative invasin; Pro 21.0 7.4E+02 0.016 23.7 10.9 32 137-168 169-201 (465)
64 PF02530 Porin_2: Porin subfam 20.3 3.9E+02 0.0085 24.7 7.0 87 138-227 289-378 (379)
No 1
>cd07306 Porin3_VDAC Voltage-dependent anion channel of the outer mitochondrial membrane. The voltage-dependent anion channel (VDAC) regulates the flux of mostly anionic metabolites through the outer mitochondrial membrane, which is highly permeable to small molecules. VDAC is the most abundant protein in the outer membrane, and membrane potentials can toggle VDAC between open or high-conducting and closed or low-conducting forms. VDAC binds to and is regulated in part by hexokinase, an interaction that renders mitochondria less susceptible to pro-apoptotic signals, most likely by intefering with VDAC's capability to respond to Bcl-2 family proteins. While VDAC appears to play a key role in mitochondrially induced cell death, a proposed involvement in forming the mitochondrial permeability transition pore, which is characteristic for damaged mitochondria and apoptosis, has been challenged by more recent studies.
Probab=100.00 E-value=1.5e-61 Score=427.80 Aligned_cols=268 Identities=36% Similarity=0.615 Sum_probs=256.9
Q ss_pred CCCCCCccccccccccCCCCCC-ceEEEEecCCCCcEEEEEEEeeC--ceEEEEEEEEEEeCCeEEEEEEeCCCceEEEE
Q 023992 5 PAPFSDVGKRAKDLLNKDYDFG-HKFTLSVPSSTGLGLSATGLKKD--EIFIGDINSVYKSGNTTVDVKVDTYSSVSTKV 81 (274)
Q Consensus 5 p~~f~dl~K~akdll~k~y~~~-~~l~~~~~~~~g~~f~~~~~~~~--~~~~g~~~~~~~~~~~~~~~~~~t~~~l~~~i 81 (274)
||+|.||+|.|||||+|||+++ |+|+|++++++|++|+++++.++ +++.|++|++|+.++++++++|+|+|++.++|
T Consensus 1 p~~f~digK~akDll~k~y~~g~~kl~~~tk~~~gv~~~~~g~~~~~~~~~~g~~e~k~~~~~~t~~~k~~t~n~l~t~v 80 (276)
T cd07306 1 PPTYFDIGKSAKDLLTKGYNFGAWKLDVKTKTPNGVEFTSTGSKKPDTGKVSGSLEAKYKIKGLTLTQKWNTDNVLLTEI 80 (276)
T ss_pred CCceeccccchhhcccCCCCCCCEEEEEEEECCCCeEEEEEEEeCCCCceEEEEEEEEEEeCCEEEEEEEeCCCceeEEE
Confidence 8999999999999999999975 99999999999999999998876 69999999999999999999999999999999
Q ss_pred EEcc-cCCCeEEEEEEEec---CCCceEEEEEEcCCceEEEEEeeCCCCCeeeEEEEEccCCeEEEEEEEEeccCCccee
Q 023992 82 TMVD-ILPSTKAALSFRIP---DHKSGKLDLQYLHPHAAIDSSIGLNPTPLLELSATIGSKELVLGGEVGFDTASASFIK 157 (274)
Q Consensus 82 ~~~~-~~~glk~~~~~~~p---~~~~~~~~~~y~~~~~~~~~~~~l~~~p~~~~s~~~~~~~~~lG~e~~yd~~~~~~~~ 157 (274)
++++ ++||+|+++++.+| +.++++++++|+|+++++++++++..+|.++.++++++++|++|+|+.||..++.+++
T Consensus 81 ~~~~~~~~glk~~~~~~~~p~~~~~s~kl~~~y~~~~~~~~~~v~~~~~p~~~~s~~~g~~~~~~G~e~~yd~~~~~~~~ 160 (276)
T cd07306 81 TIEDLLAPGLKLTLDTTFPPNTGKKSGKLKAGYKHDPININADVDLNKGPLVGASAVLGYKGFLLGAEVVYDTAKSKFTK 160 (276)
T ss_pred EECcccCCcceEEEEEEECCCCCCceEEEEEEEecCCeeEEEEecccCCCeeEEEEEecccceEEEEEEEEeccCCcEee
Confidence 9999 66999999999975 3579999999999999999999987789999999999999999999999999889999
Q ss_pred eEEEEeeecCCcEEEEEEccCcCeEEEEEEEEeCCcceEEEEEEEEeccCccEEEEEEEEeeCCCCeEEEEecCCceEEE
Q 023992 158 YTAGIGLNKPDFSAALLLADKGQALKASYIHAVDPFTSVAAEMTHRFSTYQNSFTIGSSHLVDPLTLVKTRLSDGGKFAV 237 (274)
Q Consensus 158 ~~~~~~Y~~~~~~~~~~~~~~~~~~~~S~~~kvs~~~~~g~e~~~~~~~~~~~~~vg~~~~ld~~~~~Kakv~s~g~v~~ 237 (274)
|+++++|+.++|++++++++ ++.+++||||++++++++|+|+.|....+++++++|+||.+++++++|||||++|.+++
T Consensus 161 ~~~~~~Y~~~d~~~s~~l~~-~~~l~~S~~~kv~~~l~~g~e~~~~~~~~~~~~~vg~~y~l~~~~~vkakv~~~g~v~~ 239 (276)
T cd07306 161 YNFALGYTNGDFELSLKLNN-GKTLRGSYFHKVSPRLAVGAKVTWYSGTNETTFAVGGQYALDPDALVKAKVNNDGQLGL 239 (276)
T ss_pred EEEEEEEecCCeEEEEEECC-CCEEEEEEEEEcCCCeEEEEEEEEecCCCCcEEEEEEEEEcCCCCEEEEEECCCceEEE
Confidence 99999999999999999998 79999999999999999999999999889999999999999989999999999999999
Q ss_pred EEEEEeeCCeEEEEEEEEecCCCC-CCCeeEEEEEEc
Q 023992 238 QFQREWRPKSLVTVSAEYDSKAIN-SAPKMGLAIALK 273 (274)
Q Consensus 238 ~~~~~l~~~~~l~ls~~~d~~~~~-~~~k~G~~l~~~ 273 (274)
+|+++|+|++++++|+++|+++++ +.||||++|+|+
T Consensus 240 ~y~~kl~~~v~~tls~~~d~~~~~~~~~K~G~~l~~~ 276 (276)
T cd07306 240 SYQHKLRPGVTLTLSAGFDAKNLNQGGHKFGLSLSLK 276 (276)
T ss_pred EEEEEcCCCcEEEEEEEeeccCcCCCCCeEEEEEEeC
Confidence 999999999999999999999886 799999999986
No 2
>KOG3126 consensus Porin/voltage-dependent anion-selective channel protein [Inorganic ion transport and metabolism]
Probab=100.00 E-value=8.4e-62 Score=419.66 Aligned_cols=272 Identities=33% Similarity=0.515 Sum_probs=258.0
Q ss_pred CCCCCCCCCccccccccccCCCCCC-ceEEEEecCCCCcEEEEEEEeeC--ceEEEEEEEEEEeC--CeEEEEEEeCCCc
Q 023992 2 GSNPAPFSDVGKRAKDLLNKDYDFG-HKFTLSVPSSTGLGLSATGLKKD--EIFIGDINSVYKSG--NTTVDVKVDTYSS 76 (274)
Q Consensus 2 ~~~p~~f~dl~K~akdll~k~y~~~-~~l~~~~~~~~g~~f~~~~~~~~--~~~~g~~~~~~~~~--~~~~~~~~~t~~~ 76 (274)
.|.||+|.||||.|||||+|||+++ |++++++++.+|++|++++..+. +++.|++|+||+++ +++++++|+|+++
T Consensus 1 ~~~pp~y~digK~ArDl~~kgy~~g~~~~~~~t~t~~gv~ftssg~~~~~~~~v~gsle~k~~~~~~glt~t~kw~Tdn~ 80 (281)
T KOG3126|consen 1 MMAPPTYADLGKLARDLFNKGYGFGLWKLDLKTKTESGVEFTSSGSVNTDTGKVKGSLETKYKDKDYGLTLTEKWNTDNT 80 (281)
T ss_pred CCCCcchhhhhhHHHHHhhCCCCCCcEEEEEEeeccCcEEEEeeeccccceeeeeeeeEEEEeeccCceEEEEEeecCCc
Confidence 3779999999999999999999998 89999999999999999998765 68999999999988 7999999999999
Q ss_pred eEEEEEEcc-cCCCeEEEEEEEecC---CCceEEEEEEcCCceEEEEEeeCCCCCeeeEEEEEccCCeEEEEEEEEeccC
Q 023992 77 VSTKVTMVD-ILPSTKAALSFRIPD---HKSGKLDLQYLHPHAAIDSSIGLNPTPLLELSATIGSKELVLGGEVGFDTAS 152 (274)
Q Consensus 77 l~~~i~~~~-~~~glk~~~~~~~p~---~~~~~~~~~y~~~~~~~~~~~~l~~~p~~~~s~~~~~~~~~lG~e~~yd~~~ 152 (274)
+.++|++++ ++||+|+.+..++|+ .+++|++++|.|+++++.+...+.++|.+..++++++++|++|+|+.||.++
T Consensus 81 L~t~I~~~~~~~pglk~~~~~s~~p~~~~ks~Klk~~y~~~~~~~~~~~~~~~~P~i~~s~v~g~~g~l~G~~~~fDt~~ 160 (281)
T KOG3126|consen 81 LGTEITVEDQLAPGLKLTLDSSFSPNTGKKSGKLKLSYARDHFNLGADDFLTANPLILGSLVLGHEGWLLGYETTFDTAS 160 (281)
T ss_pred cceEEEEccccCCceEEEEEEeecCcccccceeeecccccccceeeeccccccCCeEEEEEEecccceEEEEeEEEeccC
Confidence 999999987 999999999999765 6899999999999999988644457999999999999999999999999999
Q ss_pred CcceeeEEEEeeecCCcEEEEEEccCcCeEEEEEEEEeCCcceEEEEEEEEeccCccEEEEEEEEeeCCCCeEEEEecCC
Q 023992 153 ASFIKYTAGIGLNKPDFSAALLLADKGQALKASYIHAVDPFTSVAAEMTHRFSTYQNSFTIGSSHLVDPLTLVKTRLSDG 232 (274)
Q Consensus 153 ~~~~~~~~~~~Y~~~~~~~~~~~~~~~~~~~~S~~~kvs~~~~~g~e~~~~~~~~~~~~~vg~~~~ld~~~~~Kakv~s~ 232 (274)
+.+++|+++++|..+++++++.++| .+.+.+|+|||+++.++++++++|.....+++++||.||.+|+.++|||||++.
T Consensus 161 ~~~t~~n~~lgy~~~d~~l~~~~nn-~~~~~~s~yq~v~~~~~~~~~~~~~~~~~~~~~~igt~Y~lD~~t~VkAKVnn~ 239 (281)
T KOG3126|consen 161 GKLTKYNAALGYTTEDFTLHLNLNN-GTEFLASIYQRVNEKLETGANAEWIAGSSNTRFTIGTKYALDPDTSVKAKVNNA 239 (281)
T ss_pred CcEeeEEEEEEeecCCcEEEEEecc-cchhhhhhhhhhcchheeeeeEEEeecCCccEEEEEEEeccCCCceeeeeecCC
Confidence 9999999999999999999999987 799999999999999999999999998889999999999999999999999999
Q ss_pred ceEEEEEEEEeeCCeEEEEEEEEecCCCCCCCeeEEEEEEcC
Q 023992 233 GKFAVQFQREWRPKSLVTVSAEYDSKAINSAPKMGLAIALKP 274 (274)
Q Consensus 233 g~v~~~~~~~l~~~~~l~ls~~~d~~~~~~~~k~G~~l~~~~ 274 (274)
|+++++|+|+|+|++++++|+++|.++++..||||++|+|+|
T Consensus 240 g~~gl~yq~~lrp~i~~t~s~~~d~~~~~~~hK~Glsl~~~~ 281 (281)
T KOG3126|consen 240 GLAGLGYQQTLRPGIKVTLSAEFDGKALDAGHKFGLSLALKP 281 (281)
T ss_pred ceeeEEEEEecCCCcEEEEEEEEeccCCCCCcceeEEEeecC
Confidence 999999999999999999999999999875599999999997
No 3
>cd07303 Porin3 Eukaryotic porin family that forms channels in the mitochondrial outer membrane. The porin family 3 contains two sub-families that play vital roles in the mitochondrial outer membrane, a translocase for unfolded pre-proteins (Tom40) and the voltage-dependent anion channel (VDAC) that regulates the flux of mostly anionic metabolites through the outer mitochondrial membrane.
Probab=100.00 E-value=3.7e-52 Score=366.89 Aligned_cols=259 Identities=21% Similarity=0.356 Sum_probs=238.1
Q ss_pred CCCCccccccccccCCCCCCceEEEEecCCCCcEEEEEEEee------CceEEEEEEEEEEeC--CeEEEEEEeCCCceE
Q 023992 7 PFSDVGKRAKDLLNKDYDFGHKFTLSVPSSTGLGLSATGLKK------DEIFIGDINSVYKSG--NTTVDVKVDTYSSVS 78 (274)
Q Consensus 7 ~f~dl~K~akdll~k~y~~~~~l~~~~~~~~g~~f~~~~~~~------~~~~~g~~~~~~~~~--~~~~~~~~~t~~~l~ 78 (274)
+|+||+|+|||||++||++|++++|++..++ +|+++++.. ...+.++++.++++. +++++++|++++++.
T Consensus 1 ~~~digk~ardll~~~~~~g~k~~v~~~~~~--~f~~s~~~~~~~~~~~~~~~~~~~~k~~~~~~~~t~~~~~~~dn~~~ 78 (274)
T cd07303 1 TYAELGKSARDLFTKGYGGGIKLDVKTKSEL--EFTSSGSANTETIESTTKVGGSLETKYRWSPYGLTFTEKWNTDNTLG 78 (274)
T ss_pred ChhHhhhhhHHhcccCCCCCEEEEEEecCCC--ccEEcccccccccCCCceEEEEEEEeeeecCCCeEEEEEEEcCCcce
Confidence 5999999999999999999999999998875 699999764 348999999998764 699999999999999
Q ss_pred EEEEEcc-cCCCeEEEEEEEe-cC--CCceEEEEEEcCCceEEEEEeeCCCCCeeeEEEEEccCCeEEEEEEEEeccCCc
Q 023992 79 TKVTMVD-ILPSTKAALSFRI-PD--HKSGKLDLQYLHPHAAIDSSIGLNPTPLLELSATIGSKELVLGGEVGFDTASAS 154 (274)
Q Consensus 79 ~~i~~~~-~~~glk~~~~~~~-p~--~~~~~~~~~y~~~~~~~~~~~~l~~~p~~~~s~~~~~~~~~lG~e~~yd~~~~~ 154 (274)
+++++.+ +.||+|.++.+++ |. ...++++.+|+++++++++.++. .+|.+..++++++++|++|+|+.||.++ .
T Consensus 79 ~~~~~~~~~~~glk~~~~~~~~~~~~~~~~q~~~~y~~~~~~~~l~~~~-~gp~v~~~~~~g~~~~~~G~e~~yd~~~-~ 156 (274)
T cd07303 79 LEITVEDQLSRGLKSTFDSSFSPNTGKKNAKIKTGYKRINLGCDVDFDI-AGPLIRGALVLGYEGWLAGYQMVFETVS-R 156 (274)
T ss_pred EEEEEecccCCCeEEEEEEEECCCCccEEEEEeccEEcCCeeEEEEeec-CCCEEEEEEEEeecceEEEEEEEEeccc-c
Confidence 9999988 8899999999986 42 36889999999999988888765 5899999999999999999999999987 4
Q ss_pred ceeeEEEEeeec--CCcEEEEEEccCcCeEEEEEEEEeCCcceEEEEEEEEeccCccEEEEEEEEeeCCCCeEEEEecCC
Q 023992 155 FIKYTAGIGLNK--PDFSAALLLADKGQALKASYIHAVDPFTSVAAEMTHRFSTYQNSFTIGSSHLVDPLTLVKTRLSDG 232 (274)
Q Consensus 155 ~~~~~~~~~Y~~--~~~~~~~~~~~~~~~~~~S~~~kvs~~~~~g~e~~~~~~~~~~~~~vg~~~~ld~~~~~Kakv~s~ 232 (274)
+++++++++|.. ++|++++++++ ++.+++|||||++|++++|+|++|+...++++++||+||.+++++++|||||++
T Consensus 157 ~~~~~~~~~y~~~y~d~~~s~~l~~-~~~l~~Sy~hkvs~~~~~g~e~~~~~~~~e~~~~vG~~y~l~~~~~vkakids~ 235 (274)
T cd07303 157 VTQSNFAVGYKTDYNEFQAHTNVND-GTEFGGSIYHKVNDKLEVGVNLAATAGNSNTRFGIAAKYQVDPDACFSASVNNS 235 (274)
T ss_pred ccccceEEEEEccCCCeEEEEEEcC-CCeEEEEEEEEcCCceEEEEEEEeeccCCccEEEEEEEEecCCCCEEEEEECCC
Confidence 589999999998 89999999987 799999999999999999999999988899999999999998889999999999
Q ss_pred ceEEEEEEEEeeCCeEEEEEEEEecCCCCCCCeeEEEEEE
Q 023992 233 GKFAVQFQREWRPKSLVTVSAEYDSKAINSAPKMGLAIAL 272 (274)
Q Consensus 233 g~v~~~~~~~l~~~~~l~ls~~~d~~~~~~~~k~G~~l~~ 272 (274)
|.|+++||++|+|+++|++|+++|++ ++.||||+||+|
T Consensus 236 g~v~~~~~~~l~~~~~ltls~~~D~~--~~~~KfG~gl~~ 273 (274)
T cd07303 236 SLVGLGYTQTLKPGIKLTLSALLDHK--AGGHKLGLGLEF 273 (274)
T ss_pred ceEEEEEEEEcCCCcEEEEEEEecCC--CCCeeEEEEEEe
Confidence 99999999999999999999999995 578999999987
No 4
>PF01459 Porin_3: Eukaryotic porin; InterPro: IPR001925 The major protein of the outer mitochondrial membrane of eukaryotes is a porin that forms a voltage-dependent anion-selective channel (VDAC) that behaves as a general diffusion pore for small hydrophilic molecules [, , , ]. The channel adopts an open conformation at low or zero membrane potential and a closed conformation at potentials above 30-40 mV. This protein contains about 280 amino acids and its sequence is composed of between 12 to 16 beta-strands that span the mitochondrial outer membrane. Yeast contains two members of this family (genes POR1 and POR2); vertebrates have at least three members (genes VDAC1, VDAC2 and VDAC3) [].; GO: 0008308 voltage-gated anion channel activity, 0006820 anion transport, 0044070 regulation of anion transport, 0055085 transmembrane transport, 0005741 mitochondrial outer membrane; PDB: 3EMN_X 2K4T_A 2JK4_A.
Probab=100.00 E-value=7.9e-47 Score=333.20 Aligned_cols=260 Identities=27% Similarity=0.423 Sum_probs=233.2
Q ss_pred CCCCCCCccccccccccCCCCCC-ceEEEEecCCCCcEEEEEEEee--Cc-eEEEEEEEEEEeCCeEEEEEEeCCCceEE
Q 023992 4 NPAPFSDVGKRAKDLLNKDYDFG-HKFTLSVPSSTGLGLSATGLKK--DE-IFIGDINSVYKSGNTTVDVKVDTYSSVST 79 (274)
Q Consensus 4 ~p~~f~dl~K~akdll~k~y~~~-~~l~~~~~~~~g~~f~~~~~~~--~~-~~~g~~~~~~~~~~~~~~~~~~t~~~l~~ 79 (274)
|||.|+||+|+|||||++||+|+ ++++++++++.++.|++++... .+ .+.+.++++|. +..+++.|+.++...+
T Consensus 1 nP~~f~dl~k~akdll~~~y~f~g~kl~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~d~~~~~ 78 (273)
T PF01459_consen 1 NPGSFEDLGKEAKDLLPKDYNFDGFKLDVKKKTPNGPNFTVSHSFSLGTSVPSSYSFGAKYK--GPKLTVKGDTDNDGNL 78 (273)
T ss_dssp -S-SCCCCCHCCHHHHCTTSSTTEEEEEEEEE-TTCEEEEEEEEEETTTT--EEEEEEEEEE--CEEEEEEEETTTEEEE
T ss_pred CCCChHHHhHHHHHhccCCCCCcCEEEEEEecccCcceEEEEEEEecCCCCccceEEEEEEe--CceeeEEEEeCCcccE
Confidence 79999999999999999999986 9999999999999999999876 35 79999999998 7788899999999999
Q ss_pred EEEEcc-cCCCeEEEEEEEec-C--CCceEEEEEEcCCceEEEEEeeCCCCCeeeEEEEEccC-CeEEEEEEEEeccCCc
Q 023992 80 KVTMVD-ILPSTKAALSFRIP-D--HKSGKLDLQYLHPHAAIDSSIGLNPTPLLELSATIGSK-ELVLGGEVGFDTASAS 154 (274)
Q Consensus 80 ~i~~~~-~~~glk~~~~~~~p-~--~~~~~~~~~y~~~~~~~~~~~~l~~~p~~~~s~~~~~~-~~~lG~e~~yd~~~~~ 154 (274)
++++++ +.||+++.+.++++ + .+..+++++|+++++++.+.+++...|.+..+.+.+.. +|++|+|+.||...+.
T Consensus 79 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~y~~~~~~~~~~~~~~~~~~~~~s~~~~v~~~~~lG~e~~~~~~~~~ 158 (273)
T PF01459_consen 79 EASVRNKLSPGLKLKLSAQLSPGSGKKSAQLEADYKGDDFNATFKVDNDNNPIFNASYVQSVTPNLALGAEATYDLSSGK 158 (273)
T ss_dssp EEEEESSTTTTEEEEEEEEE-TTTS-EEEEEEEEEEETTEEEEEEEEESTS-EEEEEEEEEET-TEEEEEEEEEETTTTC
T ss_pred EEEEecccCcceEEEEEEEEeecCCceeeEEEEEEecCCEEEEEEEcccCCCcEEEEEEEeccccEEEEEEEEEecccCC
Confidence 999998 89999999999864 3 36899999999999999999987558899999998755 9999999999999999
Q ss_pred ceeeEEEEeeecC----CcEEEEEEccCcCeEEEEEEEEeCCcceEEEEEEEEeccCccEEEEEEEEeeCCCCeEEEEec
Q 023992 155 FIKYTAGIGLNKP----DFSAALLLADKGQALKASYIHAVDPFTSVAAEMTHRFSTYQNSFTIGSSHLVDPLTLVKTRLS 230 (274)
Q Consensus 155 ~~~~~~~~~Y~~~----~~~~~~~~~~~~~~~~~S~~~kvs~~~~~g~e~~~~~~~~~~~~~vg~~~~ld~~~~~Kakv~ 230 (274)
+.+|+++++|..+ ++++++++.++.+.+++||||++++++++|+|++++...+++.++||++|.+++.+++|||||
T Consensus 159 ~~~~~~~~~~~~~Y~~~~~~~~~~~~~~~~~l~~sy~~k~~~~~~~g~e~~~~~~~~~~~~~vG~~~~l~~~~~vk~kvd 238 (273)
T PF01459_consen 159 SSKYNAGLSYAARYTHPDYTASATLSNNFGTLTASYFQKVNDKLQLGAELTYNLSSRESTFTVGYQYKLDDSSTVKAKVD 238 (273)
T ss_dssp EEEEEEEEEEEET----TEEEEEEE-ETTTEEEEEEEEESSTTEEEEEEEEEETTCCEEEEEEEEEEEECTTEEEEEEEE
T ss_pred cCcceEEEEEeccccceeEEEEEEEcCCCCEEEEEEEEEeccceeeeeeeeecccCCCceEEEEEEEEcCcccEEEEEEc
Confidence 9999999998888 999999996558999999999999999999999999999999999999999987779999999
Q ss_pred CCceEEEEEEEEeeCCeEEEEEEEEecCCCCCCCeeE
Q 023992 231 DGGKFAVQFQREWRPKSLVTVSAEYDSKAINSAPKMG 267 (274)
Q Consensus 231 s~g~v~~~~~~~l~~~~~l~ls~~~d~~~~~~~~k~G 267 (274)
++|+|+++||++|+|++++++|+++|+++. .||||
T Consensus 239 s~g~v~~~~~~~l~~~~~l~ls~~~d~~~~--~~KfG 273 (273)
T PF01459_consen 239 SNGRVSASYEQKLNPGVTLTLSAELDHKNN--NHKFG 273 (273)
T ss_dssp TTSEEEEEEEEEECTTEEEEEEEEECTT-C---EEEE
T ss_pred CCCEEEEEEEEecCCCcEEEEEEEEccCCC--CCCcC
Confidence 999999999999999999999999999664 79998
No 5
>cd07305 Porin3_Tom40 Translocase of outer mitochondrial membrane 40 (Tom40). Tom40 forms a channel in the mitochondrial outer membrane with a pore about 1.5 to 2.5 nanometers wide. It functions as a transport channel for unfolded protein chains and forms a complex with Tom5, Tom6, Tom7, and Tom22. The primary receptors Tom20 and Tom70 recruit the unfolded precursor protein from the mitochondrial-import stimulating factor (MSF) or cytosolic Hsc70. The precursor passes through the Tom40 channel and through another channel in the inner membrane, formed by Tim23, to be finally translocated into the mitochondrial matrix. The process depends on a proton motive force across the inner membrane and requires a contact site where the outer and inner membranes come close. Tom40 is also involved in inserting outer membrane proteins into the membrane, most likely not via a lateral opening in the pore, but by transfering precursor proteins to an outer membrane sorting and assembly machinery.
Probab=100.00 E-value=1.3e-41 Score=301.13 Aligned_cols=261 Identities=13% Similarity=0.215 Sum_probs=229.7
Q ss_pred CCCCCCCCccccccccccCCCCCCceEEEEecCCCCcEEEEEEEeeCc----eEEEEEEEEEEeCC--eEEEEEEeCCCc
Q 023992 3 SNPAPFSDVGKRAKDLLNKDYDFGHKFTLSVPSSTGLGLSATGLKKDE----IFIGDINSVYKSGN--TTVDVKVDTYSS 76 (274)
Q Consensus 3 ~~p~~f~dl~K~akdll~k~y~~~~~l~~~~~~~~g~~f~~~~~~~~~----~~~g~~~~~~~~~~--~~~~~~~~t~~~ 76 (274)
-||++|+||+|+|||++..+|..|.|++++..- +..|.++++...+ ...-.+.+.|.... ..+..++|+++.
T Consensus 2 ~nPg~~e~l~~e~k~~~~~~~~~G~r~~~~k~l--s~~f~~shs~~lg~~~~~~~y~f~a~y~~~~~~~~~~~~id~~g~ 79 (279)
T cd07305 2 PNPGTFEELHREVKEVFPLDFFDGFRLDVNKGL--SPHFQVSHSLHLGSSSLTSSYQFGATYVGDKQYPFLQGDIDNDGN 79 (279)
T ss_pred cCCccHHHHHHHHHHhcCccccccEEEEEcccc--CcCeeEEEEEEECCCCCCCCcEeeeEEecCCCcEEEEEEeCCCCc
Confidence 489999999999999999999888999999854 3568888865433 23346777787777 889999999999
Q ss_pred eEEEEEEcccCCCeEEEEEEEecC--CCceEEEEEEcCCceEEEEEeeCCCCCe-eeEEEEEc-------cCCeEEEEEE
Q 023992 77 VSTKVTMVDILPSTKAALSFRIPD--HKSGKLDLQYLHPHAAIDSSIGLNPTPL-LELSATIG-------SKELVLGGEV 146 (274)
Q Consensus 77 l~~~i~~~~~~~glk~~~~~~~p~--~~~~~~~~~y~~~~~~~~~~~~l~~~p~-~~~s~~~~-------~~~~~lG~e~ 146 (274)
+.+++..+ +.+.++.++.+++++ ....+++.+|.++++++.+.+ .+|. ++.+++++ +|+|++|+|+
T Consensus 80 l~~~~~~~-~~~~~~~k~~~~~~~~~~~~~q~~~dy~g~d~t~~l~~---~n~~~~~~sg~~~~~ylq~vt~~l~lG~E~ 155 (279)
T cd07305 80 LNARIIHQ-LGDRLRSKLQAQLQDSKFNMSQLELDYRGDDFTASLKL---ANPDILNETGIYVASYLQSVTPKLALGGEL 155 (279)
T ss_pred eeEEEEec-cCcceEEEEEEEecCCCceeEEEEEEEcCCceEEEEEE---eCCCcccccEEEEEEEEEEccCcEEEEEEE
Confidence 99999854 999999999888765 357899999999999887776 3563 56677665 9999999999
Q ss_pred EEec-cCCcceeeEEEEeeecCCcEEEEEEccCcCeEEEEEEEEeCCcceEEEEEEEEeccCccEEEEEEEEeeCCCCeE
Q 023992 147 GFDT-ASASFIKYTAGIGLNKPDFSAALLLADKGQALKASYIHAVDPFTSVAAEMTHRFSTYQNSFTIGSSHLVDPLTLV 225 (274)
Q Consensus 147 ~yd~-~~~~~~~~~~~~~Y~~~~~~~~~~~~~~~~~~~~S~~~kvs~~~~~g~e~~~~~~~~~~~~~vg~~~~ld~~~~~ 225 (274)
.|+. +.++++.++++++|+.++|++++++++ .+.+.+||||++++++++|+|++|+...+++.+++|++|.++ ++++
T Consensus 156 ~~~~~~~~~~~~~~~~~rY~~~d~~~s~~l~~-~~~l~asY~~kvs~~l~lG~el~~~~~~~es~~tvg~~y~~~-~~~~ 233 (279)
T cd07305 156 VYQRVPGNGISVLSYAARYTAGNWIASGQLGA-QGGLHLSYYRKLSDKLQLGVELELNLRTRESTATLGYQYDFR-QSRF 233 (279)
T ss_pred EEEEcCCCCceeEEEEEEEccCCEEEEEEEcC-CCeEEEEEEEEcccceEeeeeeeecccCCceeEEEEEEEEcC-CCEE
Confidence 9996 678889999999999999999999988 489999999999999999999999999999999999999996 9999
Q ss_pred EEEecCCceEEEEEEEEeeCCeEEEEEEEEecCCCCCCCeeEEEEEEc
Q 023992 226 KTRLSDGGKFAVQFQREWRPKSLVTVSAEYDSKAINSAPKMGLAIALK 273 (274)
Q Consensus 226 Kakv~s~g~v~~~~~~~l~~~~~l~ls~~~d~~~~~~~~k~G~~l~~~ 273 (274)
||+||++|.|+++||++|+|++++++|+++|++ ++.+|||+||.|+
T Consensus 234 k~~ids~g~v~~~~e~~l~~~~~l~ls~~~d~~--~~~~kfG~gl~i~ 279 (279)
T cd07305 234 RGSIDSNGKVSAVLEKRLPLPLSLLLSGELNHV--KNDYKFGFGLTIG 279 (279)
T ss_pred EEEEcCCCEEEEEEEEecCCCeEEEEEEEEccc--CCcceEEEEEEeC
Confidence 999999999999999999999999999999995 4789999999874
No 6
>KOG3296 consensus Translocase of outer mitochondrial membrane complex, subunit TOM40 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=3.5e-29 Score=218.21 Aligned_cols=256 Identities=15% Similarity=0.206 Sum_probs=198.9
Q ss_pred CCCCCCCCccccccccc-----------cCCCC--C--CceEEEEecCCCCcEEEEEEEeeCceEEEEEEEEEEeCCeEE
Q 023992 3 SNPAPFSDVGKRAKDLL-----------NKDYD--F--GHKFTLSVPSSTGLGLSATGLKKDEIFIGDINSVYKSGNTTV 67 (274)
Q Consensus 3 ~~p~~f~dl~K~akdll-----------~k~y~--~--~~~l~~~~~~~~g~~f~~~~~~~~~~~~g~~~~~~~~~~~~~ 67 (274)
-||++|++|+++|+ +. +++.. | ++.+.++...+.|+.|..++ .|..++.+......+
T Consensus 28 ~Npgt~e~L~~~~~-~~p~~~~g~kl~v~k~Ls~~fqvs~t~~ls~~~~sg~~fg~ty-------~~~~q~~~~~~~~il 99 (308)
T KOG3296|consen 28 LNPGTVEELHSEAS-VDPTLSEGVKLGVNKGLSNHFQVSPTFVLSHIAASGYRFGPTY-------VYTFQASPTEAFLIL 99 (308)
T ss_pred CCcHHHHHhhhhhc-cCceeecceEeeecccccCceEeccceecccCccccceeccce-------eeeeccccCCCcceE
Confidence 38999999999996 33 22221 1 23444444445555555554 344444444444566
Q ss_pred EEEEeCCCceEEEEEEcccCCCeEEEEEEEecCCCceEEEEEEcCCceEEEEEeeCC-CCCeeeEEEEE-------ccCC
Q 023992 68 DVKVDTYSSVSTKVTMVDILPSTKAALSFRIPDHKSGKLDLQYLHPHAAIDSSIGLN-PTPLLELSATI-------GSKE 139 (274)
Q Consensus 68 ~~~~~t~~~l~~~i~~~~~~~glk~~~~~~~p~~~~~~~~~~y~~~~~~~~~~~~l~-~~p~~~~s~~~-------~~~~ 139 (274)
-..+|++|.+.+++.. ++.++++.++..++.+ ...++-|+..+++..+.+..+. .+|.+..++++ .+|+
T Consensus 100 ~G~vD~~Gslna~l~~-~l~~~Lr~K~~~q~~~--~k~ve~q~~~e~~g~d~t~~~~~~n~~~~~sgi~v~~~lqsvT~~ 176 (308)
T KOG3296|consen 100 RGDVDNDGSLNARLIH-QLTDNLRSKVALQIQQ--SKEVESQVTGEYRGRDYTLTLPLGNPDLGESGIYVASYLQSVTPR 176 (308)
T ss_pred EEecCCCCchhheeec-ccchhhHHHHHHHhcc--hhhhccccccceecccccccccccCcccccchHHHHHHHhhhccc
Confidence 6677899999999964 4888887666555444 2366777777777766666544 47776556554 5999
Q ss_pred eEEEEEEEEec-cCCcceeeEEEEeeecCCcEEEEEEccCcCeEEEEEEEEeCCcceEEEEEEEEeccCccEEEEEEEEe
Q 023992 140 LVLGGEVGFDT-ASASFIKYTAGIGLNKPDFSAALLLADKGQALKASYIHAVDPFTSVAAEMTHRFSTYQNSFTIGSSHL 218 (274)
Q Consensus 140 ~~lG~e~~yd~-~~~~~~~~~~~~~Y~~~~~~~~~~~~~~~~~~~~S~~~kvs~~~~~g~e~~~~~~~~~~~~~vg~~~~ 218 (274)
|+||+|+.|.. +....+..+++.||...+|++++++.. ..++++||||..++++.|+|+.++..-+++..+++++|+
T Consensus 177 LsLG~El~~~~~~~~~~s~ls~a~RY~~~~~~~~~t~g~--~g~~~~y~~r~~~~~~~~ve~~~~~~~~~~~~t~a~~~~ 254 (308)
T KOG3296|consen 177 LSLGGELLYQRRPGPEESGLSYAGRYEHSNWDATVTLGQ--QGLTGTYYQRAVEKLQMGVEFETNTRLQSTDVTAAYGYD 254 (308)
T ss_pred ccccceeEeccCCCccccceeeeeeeeecceeeEEeccc--ccceehhhhhhhhhhccceeEeeecccCCcceEEEEEee
Confidence 99999999998 556667899999999999999999974 588999999999999999999999988899999999999
Q ss_pred e-CCCCeEEEEecCCceEEEEEEEEeeCCeEEEEEEEEecCCCCCCCeeEEEEEEc
Q 023992 219 V-DPLTLVKTRLSDGGKFAVQFQREWRPKSLVTVSAEYDSKAINSAPKMGLAIALK 273 (274)
Q Consensus 219 l-d~~~~~Kakv~s~g~v~~~~~~~l~~~~~l~ls~~~d~~~~~~~~k~G~~l~~~ 273 (274)
+ .+++.+||+||+||.|++.+|+||.+.+++.+|+++|| .+..+|||+||++.
T Consensus 255 l~~~~s~~rg~vDSn~~v~~~lek~L~l~l~~~ls~~lnh--~k~~~~~G~gl~~~ 308 (308)
T KOG3296|consen 255 LPTAQSVFRGSVDSNWSVGAVLEKKLPLPLTLALSAELNH--VKNDFKFGFGLTIG 308 (308)
T ss_pred ccCccceEEEEeccCceehhhhHhhcCCCceeeeeeeecc--cccccccceeEEeC
Confidence 8 77899999999999999999999977899999999999 44679999999874
No 7
>TIGR00989 3a0801s07tom40 mitochondrial import receptor subunit Tom40. translocase (Tom) import receptor, five proteins of the Tom channel complex, five proteins of the inner membrane translocase (Tim) and three "motor" proteins. This family is specific for the Tom40 proteins.
Probab=99.51 E-value=8.5e-13 Score=105.45 Aligned_cols=143 Identities=17% Similarity=0.188 Sum_probs=109.0
Q ss_pred CCCCCCCCccccc-cccccCCCCC-CceEEEEecCCCCcEEEEEEEeeCce--EEE-EEEEEEEeCCeEEEEEEeCCCce
Q 023992 3 SNPAPFSDVGKRA-KDLLNKDYDF-GHKFTLSVPSSTGLGLSATGLKKDEI--FIG-DINSVYKSGNTTVDVKVDTYSSV 77 (274)
Q Consensus 3 ~~p~~f~dl~K~a-kdll~k~y~~-~~~l~~~~~~~~g~~f~~~~~~~~~~--~~g-~~~~~~~~~~~~~~~~~~t~~~l 77 (274)
-||++|++|+|+| ||++-+.|.| |.|++++..-.-+..|.++++...|. +.+ ...+.|....+.+-..+|++|.+
T Consensus 2 ~nPGt~E~l~re~~rdv~l~~~~FeG~R~d~~K~~~ls~~FqvSHs~~mgs~~~p~Y~FgA~y~~~~~~l~G~id~dG~l 81 (161)
T TIGR00989 2 SNPGTIENLAKEVSRDTLLSNYMFTGLRADVTKAFSLAPLFQVSHQFAMGSQRLPPYAFSALFGTNQLFAQGNLDNDGAV 81 (161)
T ss_pred cCCccHHHHHHHHhhhcccCccccccEEEEEecccccCCceeEEEEEEeCCCCCCCceeeeEecCCcEEEEEEeCCCCCE
Confidence 3899999999999 9999999988 69999988643346799999764432 111 12233333346778889999999
Q ss_pred EEEEEEcccCCCeEEEEEEEecC--CCceEEEEEEcCCceEEEEEeeCCCCCee-eE--EEEE-------ccCCeEEEEE
Q 023992 78 STKVTMVDILPSTKAALSFRIPD--HKSGKLDLQYLHPHAAIDSSIGLNPTPLL-EL--SATI-------GSKELVLGGE 145 (274)
Q Consensus 78 ~~~i~~~~~~~glk~~~~~~~p~--~~~~~~~~~y~~~~~~~~~~~~l~~~p~~-~~--s~~~-------~~~~~~lG~e 145 (274)
.+++..+ +.+.+..++.+++.+ ....+++.+|+.++|++++++ .+|.+ +. ++++ .+|+|+||.|
T Consensus 82 ~ar~~~~-~~~~~~~K~~~Q~~~~~~~~~Q~e~DY~G~Dft~~lk~---~Np~~~~~~~sGi~v~sylQsVTp~LaLG~E 157 (161)
T TIGR00989 82 STRLNYR-WGDRTISKVQFQISGGQPDMCQFEHDHLGDDFSASLKA---INPSFLEKGLTGIFVGSYLQSVTPRLGLGLE 157 (161)
T ss_pred EEEEEEe-eCcceeEEEEEEecCCCCceEEEEEEecCCeEEEEEEE---cCcccccccceEEEEEeeeehhCcceeeeee
Confidence 9999854 899998888887543 357889999999999998877 46764 32 4443 5999999999
Q ss_pred EEEe
Q 023992 146 VGFD 149 (274)
Q Consensus 146 ~~yd 149 (274)
+.|+
T Consensus 158 ~~yq 161 (161)
T TIGR00989 158 ALWQ 161 (161)
T ss_pred eEeC
Confidence 9985
No 8
>cd07305 Porin3_Tom40 Translocase of outer mitochondrial membrane 40 (Tom40). Tom40 forms a channel in the mitochondrial outer membrane with a pore about 1.5 to 2.5 nanometers wide. It functions as a transport channel for unfolded protein chains and forms a complex with Tom5, Tom6, Tom7, and Tom22. The primary receptors Tom20 and Tom70 recruit the unfolded precursor protein from the mitochondrial-import stimulating factor (MSF) or cytosolic Hsc70. The precursor passes through the Tom40 channel and through another channel in the inner membrane, formed by Tim23, to be finally translocated into the mitochondrial matrix. The process depends on a proton motive force across the inner membrane and requires a contact site where the outer and inner membranes come close. Tom40 is also involved in inserting outer membrane proteins into the membrane, most likely not via a lateral opening in the pore, but by transfering precursor proteins to an outer membrane sorting and assembly machinery.
Probab=99.39 E-value=6.2e-10 Score=98.72 Aligned_cols=182 Identities=15% Similarity=0.206 Sum_probs=129.4
Q ss_pred cCCCeEEEEEEEecC---CCceEEEEEEcCCc--eEEEEEeeCCCCCeeeEEEEEc-cCCeEEEEEEEEeccCCcceeeE
Q 023992 86 ILPSTKAALSFRIPD---HKSGKLDLQYLHPH--AAIDSSIGLNPTPLLELSATIG-SKELVLGGEVGFDTASASFIKYT 159 (274)
Q Consensus 86 ~~~glk~~~~~~~p~---~~~~~~~~~y~~~~--~~~~~~~~l~~~p~~~~s~~~~-~~~~~lG~e~~yd~~~~~~~~~~ 159 (274)
+.|.+.+.=.+.+.. ....++...|..+. ..+..+++-. -.++...... .+++ -..+..+.+......+.
T Consensus 34 ls~~f~~shs~~lg~~~~~~~y~f~a~y~~~~~~~~~~~~id~~--g~l~~~~~~~~~~~~--~~k~~~~~~~~~~~~~q 109 (279)
T cd07305 34 LSPHFQVSHSLHLGSSSLTSSYQFGATYVGDKQYPFLQGDIDND--GNLNARIIHQLGDRL--RSKLQAQLQDSKFNMSQ 109 (279)
T ss_pred cCcCeeEEEEEEECCCCCCCCcEeeeEEecCCCcEEEEEEeCCC--CceeEEEEeccCcce--EEEEEEEecCCCceeEE
Confidence 555544433333221 23568888888888 7777777521 1233332221 2344 34444444544567899
Q ss_pred EEEeeecCCcEEEEEEccC-----cCeEEEEEEEEeCCcceEEEEEEEE--eccCccEEEEEEEEeeCCCCeEEEEecCC
Q 023992 160 AGIGLNKPDFSAALLLADK-----GQALKASYIHAVDPFTSVAAEMTHR--FSTYQNSFTIGSSHLVDPLTLVKTRLSDG 232 (274)
Q Consensus 160 ~~~~Y~~~~~~~~~~~~~~-----~~~~~~S~~~kvs~~~~~g~e~~~~--~~~~~~~~~vg~~~~ld~~~~~Kakv~s~ 232 (274)
+.+.|..++|++++++.+. .+.+.++|.|+|+|++++|+|+.|. ...+.+..++|++|.- ++.++.+++++.
T Consensus 110 ~~~dy~g~d~t~~l~~~n~~~~~~sg~~~~~ylq~vt~~l~lG~E~~~~~~~~~~~~~~~~~~rY~~-~d~~~s~~l~~~ 188 (279)
T cd07305 110 LELDYRGDDFTASLKLANPDILNETGIYVASYLQSVTPKLALGGELVYQRVPGNGISVLSYAARYTA-GNWIASGQLGAQ 188 (279)
T ss_pred EEEEEcCCceEEEEEEeCCCcccccEEEEEEEEEEccCcEEEEEEEEEEEcCCCCceeEEEEEEEcc-CCEEEEEEEcCC
Confidence 9999999999999997553 2678999999999999999999999 5678899999999999 578899999999
Q ss_pred ceEEEEEEEEeeCCeEEEEEEEEecCCCCCCCeeEEEEEE
Q 023992 233 GKFAVQFQREWRPKSLVTVSAEYDSKAINSAPKMGLAIAL 272 (274)
Q Consensus 233 g~v~~~~~~~l~~~~~l~ls~~~d~~~~~~~~k~G~~l~~ 272 (274)
+.+.++|-|+++|++.++.-.+.+...-+....+|....+
T Consensus 189 ~~l~asY~~kvs~~l~lG~el~~~~~~~es~~tvg~~y~~ 228 (279)
T cd07305 189 GGLHLSYYRKLSDKLQLGVELELNLRTRESTATLGYQYDF 228 (279)
T ss_pred CeEEEEEEEEcccceEeeeeeeecccCCceeEEEEEEEEc
Confidence 9999999999999877776666665432334555554443
No 9
>cd07306 Porin3_VDAC Voltage-dependent anion channel of the outer mitochondrial membrane. The voltage-dependent anion channel (VDAC) regulates the flux of mostly anionic metabolites through the outer mitochondrial membrane, which is highly permeable to small molecules. VDAC is the most abundant protein in the outer membrane, and membrane potentials can toggle VDAC between open or high-conducting and closed or low-conducting forms. VDAC binds to and is regulated in part by hexokinase, an interaction that renders mitochondria less susceptible to pro-apoptotic signals, most likely by intefering with VDAC's capability to respond to Bcl-2 family proteins. While VDAC appears to play a key role in mitochondrially induced cell death, a proposed involvement in forming the mitochondrial permeability transition pore, which is characteristic for damaged mitochondria and apoptosis, has been challenged by more recent studies.
Probab=98.90 E-value=3.2e-06 Score=74.93 Aligned_cols=173 Identities=14% Similarity=0.132 Sum_probs=115.1
Q ss_pred CCcEEEEEEEee--CceEEEEEEEEEEeCCeEEEEEEeCC--CceEEEEEEcccCCCeEEEEEEEe--cC--CCceEEEE
Q 023992 37 TGLGLSATGLKK--DEIFIGDINSVYKSGNTTVDVKVDTY--SSVSTKVTMVDILPSTKAALSFRI--PD--HKSGKLDL 108 (274)
Q Consensus 37 ~g~~f~~~~~~~--~~~~~g~~~~~~~~~~~~~~~~~~t~--~~l~~~i~~~~~~~glk~~~~~~~--p~--~~~~~~~~ 108 (274)
.|........-. .+.-.|.++..|+.+.+.++..++-. -.+...+.+. .+++-+..++.+ .. .....+.+
T Consensus 88 ~glk~~~~~~~~p~~~~~s~kl~~~y~~~~~~~~~~v~~~~~p~~~~s~~~g--~~~~~~G~e~~yd~~~~~~~~~~~~~ 165 (276)
T cd07306 88 PGLKLTLDTTFPPNTGKKSGKLKAGYKHDPININADVDLNKGPLVGASAVLG--YKGFLLGAEVVYDTAKSKFTKYNFAL 165 (276)
T ss_pred CcceEEEEEEECCCCCCceEEEEEEEecCCeeEEEEecccCCCeeEEEEEec--ccceEEEEEEEEeccCCcEeeEEEEE
Confidence 344444444322 24567777777777654444433332 2333333322 355555554443 11 23567889
Q ss_pred EEcCCceEEEEEeeCCCCCeeeEEEEE-ccCCeEEEEEEEEeccCCcceeeEEEEeeecC-CcEEEEEEccCcCeEEEEE
Q 023992 109 QYLHPHAAIDSSIGLNPTPLLELSATI-GSKELVLGGEVGFDTASASFIKYTAGIGLNKP-DFSAALLLADKGQALKASY 186 (274)
Q Consensus 109 ~y~~~~~~~~~~~~l~~~p~~~~s~~~-~~~~~~lG~e~~yd~~~~~~~~~~~~~~Y~~~-~~~~~~~~~~~~~~~~~S~ 186 (274)
+|.++++.+.+.+.- ...+..|..- ..+++.+|+|+.|+...++ ..+++|++|.-+ ++.+.+++++ .+.+.++|
T Consensus 166 ~Y~~~d~~~s~~l~~--~~~l~~S~~~kv~~~l~~g~e~~~~~~~~~-~~~~vg~~y~l~~~~~vkakv~~-~g~v~~~y 241 (276)
T cd07306 166 GYTNGDFELSLKLNN--GKTLRGSYFHKVSPRLAVGAKVTWYSGTNE-TTFAVGGQYALDPDALVKAKVNN-DGQLGLSY 241 (276)
T ss_pred EEecCCeEEEEEECC--CCEEEEEEEEEcCCCeEEEEEEEEecCCCC-cEEEEEEEEEcCCCCEEEEEECC-CceEEEEE
Confidence 999999988887742 3456666553 5788999999999986655 689999999866 4999999987 58999999
Q ss_pred EEEeCCcceEEEEEEEEecc---CccEEEEEE
Q 023992 187 IHAVDPFTSVAAEMTHRFST---YQNSFTIGS 215 (274)
Q Consensus 187 ~~kvs~~~~~g~e~~~~~~~---~~~~~~vg~ 215 (274)
.|+++|++.+....+.+... +...+.+|.
T Consensus 242 ~~kl~~~v~~tls~~~d~~~~~~~~~K~G~~l 273 (276)
T cd07306 242 QHKLRPGVTLTLSAGFDAKNLNQGGHKFGLSL 273 (276)
T ss_pred EEEcCCCcEEEEEEEeeccCcCCCCCeEEEEE
Confidence 99999998887777776544 455555553
No 10
>PF01459 Porin_3: Eukaryotic porin; InterPro: IPR001925 The major protein of the outer mitochondrial membrane of eukaryotes is a porin that forms a voltage-dependent anion-selective channel (VDAC) that behaves as a general diffusion pore for small hydrophilic molecules [, , , ]. The channel adopts an open conformation at low or zero membrane potential and a closed conformation at potentials above 30-40 mV. This protein contains about 280 amino acids and its sequence is composed of between 12 to 16 beta-strands that span the mitochondrial outer membrane. Yeast contains two members of this family (genes POR1 and POR2); vertebrates have at least three members (genes VDAC1, VDAC2 and VDAC3) [].; GO: 0008308 voltage-gated anion channel activity, 0006820 anion transport, 0044070 regulation of anion transport, 0055085 transmembrane transport, 0005741 mitochondrial outer membrane; PDB: 3EMN_X 2K4T_A 2JK4_A.
Probab=98.89 E-value=1.2e-06 Score=77.16 Aligned_cols=161 Identities=17% Similarity=0.200 Sum_probs=110.2
Q ss_pred ceEEEEEEcCCceEEEEEeeCCCCCeeeEEEEE---ccCCeEEEEEEEEeccCCcceeeEEEEeeecCCcEEEEEEcc-C
Q 023992 103 SGKLDLQYLHPHAAIDSSIGLNPTPLLELSATI---GSKELVLGGEVGFDTASASFIKYTAGIGLNKPDFSAALLLAD-K 178 (274)
Q Consensus 103 ~~~~~~~y~~~~~~~~~~~~l~~~p~~~~s~~~---~~~~~~lG~e~~yd~~~~~~~~~~~~~~Y~~~~~~~~~~~~~-~ 178 (274)
...++..|......+..++ .+.....+.+ ..+++.+=.+..+..... ...+.+.+.|..+++.+.+.+.+ .
T Consensus 54 ~~~~~~~~~~~~~~~~~~~----d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~l~~~y~~~~~~~~~~~~~~~ 128 (273)
T PF01459_consen 54 SYSFGAKYKGPKLTVKGDT----DNDGNLEASVRNKLSPGLKLKLSAQLSPGSG-KKSAQLEADYKGDDFNATFKVDNDN 128 (273)
T ss_dssp EEEEEEEEECEEEEEEEET----TTEEEEEEEEESSTTTTEEEEEEEEE-TTTS--EEEEEEEEEEETTEEEEEEEEEST
T ss_pred ceEEEEEEeCceeeEEEEe----CCcccEEEEEecccCcceEEEEEEEEeecCC-ceeeEEEEEEecCCEEEEEEEcccC
Confidence 4566667763333333322 3444433333 356765555555443322 25788999999999999999874 2
Q ss_pred cCeEEEEEEEEeCCcceEEEEEEEEeccCccE-----EEEEEEEeeCCCCeEEEEe-cCCceEEEEEEEEeeCCeEEEEE
Q 023992 179 GQALKASYIHAVDPFTSVAAEMTHRFSTYQNS-----FTIGSSHLVDPLTLVKTRL-SDGGKFAVQFQREWRPKSLVTVS 252 (274)
Q Consensus 179 ~~~~~~S~~~kvs~~~~~g~e~~~~~~~~~~~-----~~vg~~~~ld~~~~~Kakv-~s~g~v~~~~~~~l~~~~~l~ls 252 (274)
...+.+||.+.+.|++.+|+|+.|+...++.. +.++.+|.- ++.++-+++ ++.+.+.++|-|++++.+.++.-
T Consensus 129 ~~~~~~s~~~~v~~~~~lG~e~~~~~~~~~~~~~~~~~~~~~~Y~~-~~~~~~~~~~~~~~~l~~sy~~k~~~~~~~g~e 207 (273)
T PF01459_consen 129 NPIFNASYVQSVTPNLALGAEATYDLSSGKSSKYNAGLSYAARYTH-PDYTASATLSNNFGTLTASYFQKVNDKLQLGAE 207 (273)
T ss_dssp S-EEEEEEEEEET-TEEEEEEEEEETTTTCEEEEEEEEEEEET-----TEEEEEEE-ETTTEEEEEEEEESSTTEEEEEE
T ss_pred CCcEEEEEEEeccccEEEEEEEEEecccCCcCcceEEEEEeccccc-eeEEEEEEEcCCCCEEEEEEEEEeccceeeeee
Confidence 47899999999999999999999998876665 455555553 689999999 67899999999999999999999
Q ss_pred EEEecCCCCCCCeeEEEEE
Q 023992 253 AEYDSKAINSAPKMGLAIA 271 (274)
Q Consensus 253 ~~~d~~~~~~~~k~G~~l~ 271 (274)
.+.+... ....+.+|..
T Consensus 208 ~~~~~~~--~~~~~~vG~~ 224 (273)
T PF01459_consen 208 LTYNLSS--RESTFTVGYQ 224 (273)
T ss_dssp EEEETTC--CEEEEEEEEE
T ss_pred eeecccC--CCceEEEEEE
Confidence 9998743 3344444443
No 11
>cd07303 Porin3 Eukaryotic porin family that forms channels in the mitochondrial outer membrane. The porin family 3 contains two sub-families that play vital roles in the mitochondrial outer membrane, a translocase for unfolded pre-proteins (Tom40) and the voltage-dependent anion channel (VDAC) that regulates the flux of mostly anionic metabolites through the outer mitochondrial membrane.
Probab=98.54 E-value=0.00011 Score=65.08 Aligned_cols=130 Identities=15% Similarity=0.104 Sum_probs=96.2
Q ss_pred cCCeEEEEEEEEeccCCcceeeEEEEeeecCCcEEEEEEccCcCeEEEEEEEEeCCcceEEEEEEEEeccC--ccEEEEE
Q 023992 137 SKELVLGGEVGFDTASASFIKYTAGIGLNKPDFSAALLLADKGQALKASYIHAVDPFTSVAAEMTHRFSTY--QNSFTIG 214 (274)
Q Consensus 137 ~~~~~lG~e~~yd~~~~~~~~~~~~~~Y~~~~~~~~~~~~~~~~~~~~S~~~kvs~~~~~g~e~~~~~~~~--~~~~~vg 214 (274)
.+++.+=.++.++..++. ....+-..|..+++.+.+.+.+ .+-+..++.+-+.+++.+|+|+.|+..++ ...+.++
T Consensus 88 ~~glk~~~~~~~~~~~~~-~~~q~~~~y~~~~~~~~l~~~~-~gp~v~~~~~~g~~~~~~G~e~~yd~~~~~~~~~~~~~ 165 (274)
T cd07303 88 SRGLKSTFDSSFSPNTGK-KNAKIKTGYKRINLGCDVDFDI-AGPLIRGALVLGYEGWLAGYQMVFETVSRVTQSNFAVG 165 (274)
T ss_pred CCCeEEEEEEEECCCCcc-EEEEEeccEEcCCeeEEEEeec-CCCEEEEEEEEeecceEEEEEEEEeccccccccceEEE
Confidence 577777777777643443 4677888899999999999965 36677788899999999999999997543 2344444
Q ss_pred EEEeeCCCCeEEEEecCCceEEEEEEEEeeCCeEEEEEEEEecCCCCCCCeeEEEEE
Q 023992 215 SSHLVDPLTLVKTRLSDGGKFAVQFQREWRPKSLVTVSAEYDSKAINSAPKMGLAIA 271 (274)
Q Consensus 215 ~~~~ld~~~~~Kakv~s~g~v~~~~~~~l~~~~~l~ls~~~d~~~~~~~~k~G~~l~ 271 (274)
+.-.. ++..+-+++++.+.+.++|-||++|++.+.+-.+.+.+. .+..+.+|..
T Consensus 166 y~~~y-~d~~~s~~l~~~~~l~~Sy~hkvs~~~~~g~e~~~~~~~--~e~~~~vG~~ 219 (274)
T cd07303 166 YKTDY-NEFQAHTNVNDGTEFGGSIYHKVNDKLEVGVNLAATAGN--SNTRFGIAAK 219 (274)
T ss_pred EEccC-CCeEEEEEEcCCCeEEEEEEEEcCCceEEEEEEEeeccC--CccEEEEEEE
Confidence 32222 567778889888999999999999988888877777632 3445555443
No 12
>TIGR00989 3a0801s07tom40 mitochondrial import receptor subunit Tom40. translocase (Tom) import receptor, five proteins of the Tom channel complex, five proteins of the inner membrane translocase (Tim) and three "motor" proteins. This family is specific for the Tom40 proteins.
Probab=97.69 E-value=0.0014 Score=52.86 Aligned_cols=49 Identities=20% Similarity=0.144 Sum_probs=40.4
Q ss_pred ceeeEEEEeeecCCcEEEEEEccC-------cCeEEEEEEEEeCCcceEEEEEEEE
Q 023992 155 FIKYTAGIGLNKPDFSAALLLADK-------GQALKASYIHAVDPFTSVAAEMTHR 203 (274)
Q Consensus 155 ~~~~~~~~~Y~~~~~~~~~~~~~~-------~~~~~~S~~~kvs~~~~~g~e~~~~ 203 (274)
...+-+-..|...||++++++.|- .+.+.++|.|.|.|++++|+|+.|.
T Consensus 106 ~~~~Q~e~DY~G~Dft~~lk~~Np~~~~~~~sGi~v~sylQsVTp~LaLG~E~~yq 161 (161)
T TIGR00989 106 PDMCQFEHDHLGDDFSASLKAINPSFLEKGLTGIFVGSYLQSVTPRLGLGLEALWQ 161 (161)
T ss_pred CceEEEEEEecCCeEEEEEEEcCcccccccceEEEEEeeeehhCcceeeeeeeEeC
Confidence 345556689999999999998762 1367899999999999999999883
No 13
>KOG3126 consensus Porin/voltage-dependent anion-selective channel protein [Inorganic ion transport and metabolism]
Probab=97.52 E-value=0.025 Score=49.88 Aligned_cols=114 Identities=14% Similarity=0.122 Sum_probs=78.7
Q ss_pred CceEEEEEEcCCceEEEEEeeCCCCCeeeEEEEE-ccCCeEEEEEEEEeccCCcceeeEEEEeeec-CCcEEEEEEccCc
Q 023992 102 KSGKLDLQYLHPHAAIDSSIGLNPTPLLELSATI-GSKELVLGGEVGFDTASASFIKYTAGIGLNK-PDFSAALLLADKG 179 (274)
Q Consensus 102 ~~~~~~~~y~~~~~~~~~~~~l~~~p~~~~s~~~-~~~~~~lG~e~~yd~~~~~~~~~~~~~~Y~~-~~~~~~~~~~~~~ 179 (274)
..-.+.+.|..+++.+...++- .-.+..|... ....+..|.++.|..... -..++++.+|.- ++..+.+++++ .
T Consensus 164 t~~n~~lgy~~~d~~l~~~~nn--~~~~~~s~yq~v~~~~~~~~~~~~~~~~~-~~~~~igt~Y~lD~~t~VkAKVnn-~ 239 (281)
T KOG3126|consen 164 TKYNAALGYTTEDFTLHLNLNN--GTEFLASIYQRVNEKLETGANAEWIAGSS-NTRFTIGTKYALDPDTSVKAKVNN-A 239 (281)
T ss_pred eeEEEEEEeecCCcEEEEEecc--cchhhhhhhhhhcchheeeeeEEEeecCC-ccEEEEEEEeccCCCceeeeeecC-C
Confidence 3556788888998888777732 2223333222 234488999999987765 468999999974 67889999987 6
Q ss_pred CeEEEEEEEEeCCcceEEEEEEEEeccCccEEEEEEEEee
Q 023992 180 QALKASYIHAVDPFTSVAAEMTHRFSTYQNSFTIGSSHLV 219 (274)
Q Consensus 180 ~~~~~S~~~kvs~~~~~g~e~~~~~~~~~~~~~vg~~~~l 219 (274)
+.+.+.|-|++.|.+.++.-.+.+...-...=-+|..+.|
T Consensus 240 g~~gl~yq~~lrp~i~~t~s~~~d~~~~~~~hK~Glsl~~ 279 (281)
T KOG3126|consen 240 GLAGLGYQQTLRPGIKVTLSAEFDGKALDAGHKFGLSLAL 279 (281)
T ss_pred ceeeEEEEEecCCCcEEEEEEEEeccCCCCCcceeEEEee
Confidence 8999999999999977777777765432211334444444
No 14
>KOG3296 consensus Translocase of outer mitochondrial membrane complex, subunit TOM40 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.89 E-value=0.0058 Score=54.30 Aligned_cols=132 Identities=13% Similarity=0.100 Sum_probs=90.3
Q ss_pred CeEEEEEEEEeccC------------CcceeeEEEEeeecCCcEEEEEEcc-C---cCeEEEEEEEEeCCcceEEEEEEE
Q 023992 139 ELVLGGEVGFDTAS------------ASFIKYTAGIGLNKPDFSAALLLAD-K---GQALKASYIHAVDPFTSVAAEMTH 202 (274)
Q Consensus 139 ~~~lG~e~~yd~~~------------~~~~~~~~~~~Y~~~~~~~~~~~~~-~---~~~~~~S~~~kvs~~~~~g~e~~~ 202 (274)
.-.+.+++.|+... ++.-.+..-..|...++.+++...+ + .+.+.++|.|.+.+++++|+|+.|
T Consensus 106 ~Gslna~l~~~l~~~Lr~K~~~q~~~~k~ve~q~~~e~~g~d~t~~~~~~n~~~~~sgi~v~~~lqsvT~~LsLG~El~~ 185 (308)
T KOG3296|consen 106 DGSLNARLIHQLTDNLRSKVALQIQQSKEVESQVTGEYRGRDYTLTLPLGNPDLGESGIYVASYLQSVTPRLSLGGELLY 185 (308)
T ss_pred CCchhheeecccchhhHHHHHHHhcchhhhccccccceecccccccccccCcccccchHHHHHHHhhhcccccccceeEe
Confidence 34566777665432 2333566777888888888887753 1 245678999999999999999999
Q ss_pred Ee--ccCccEEEEEEEEeeCCCCeEEEEecCCceEEEEEEEEeeCCeEEEEEEEEecCCCCCCCeeEEEEEE
Q 023992 203 RF--STYQNSFTIGSSHLVDPLTLVKTRLSDGGKFAVQFQREWRPKSLVTVSAEYDSKAINSAPKMGLAIAL 272 (274)
Q Consensus 203 ~~--~~~~~~~~vg~~~~ld~~~~~Kakv~s~g~v~~~~~~~l~~~~~l~ls~~~d~~~~~~~~k~G~~l~~ 272 (274)
.. ...+..++.++||.. .....-+-....|.- +.|-+|..+.+...+..+.|..--+...-++.++.+
T Consensus 186 ~~~~~~~~s~ls~a~RY~~-~~~~~~~t~g~~g~~-~~y~~r~~~~~~~~ve~~~~~~~~~~~~t~a~~~~l 255 (308)
T KOG3296|consen 186 QRRPGPEESGLSYAGRYEH-SNWDATVTLGQQGLT-GTYYQRAVEKLQMGVEFETNTRLQSTDVTAAYGYDL 255 (308)
T ss_pred ccCCCccccceeeeeeeee-cceeeEEecccccce-ehhhhhhhhhhccceeEeeecccCCcceEEEEEeec
Confidence 87 457889999999998 345555555555443 445567778888777777776321223555555543
No 15
>PRK10716 long-chain fatty acid outer membrane transporter; Provisional
Probab=93.79 E-value=4.7 Score=38.10 Aligned_cols=51 Identities=12% Similarity=0.067 Sum_probs=36.6
Q ss_pred cCeEEEEEEEEeCCcceEEEEEEEEecc-----------------------CccEEEEEEEEeeCCCCeEEEEe
Q 023992 179 GQALKASYIHAVDPFTSVAAEMTHRFST-----------------------YQNSFTIGSSHLVDPLTLVKTRL 229 (274)
Q Consensus 179 ~~~~~~S~~~kvs~~~~~g~e~~~~~~~-----------------------~~~~~~vg~~~~ld~~~~~Kakv 229 (274)
-+.+.++..|+++|++.+.+.++|..=+ ..-.+++|++|+++++.++|+=+
T Consensus 286 P~~~~lg~~~~~~~~~~l~~d~~wt~WS~~~~l~i~~~~g~~~~~~~~~w~D~w~~~~G~~Y~~n~~l~LRaG~ 359 (435)
T PRK10716 286 PEMWEVSGYNRVAPQWAIHYSLAYTSWSQFQELKATSSNGDTLFQKHEGFKDAYRIALGTTYYYDDNWTFRTGI 359 (435)
T ss_pred CcEEEEEeEEecCCcEEEEEEEEEeeecccceEEEEeCCCcceecccccceeeeEEEeeEEEECCCCeEEEEee
Confidence 3678899999999999999999884211 12346667777776666666654
No 16
>PF10082 DUF2320: Uncharacterized protein conserved in bacteria (DUF2320); InterPro: IPR018759 This domain has no known function.
Probab=90.66 E-value=13 Score=33.98 Aligned_cols=46 Identities=13% Similarity=0.215 Sum_probs=37.3
Q ss_pred EecCCceEEEEEEEEeeCCeEEEEEEEEecCCCC------CCCeeEEEEEEc
Q 023992 228 RLSDGGKFAVQFQREWRPKSLVTVSAEYDSKAIN------SAPKMGLAIALK 273 (274)
Q Consensus 228 kv~s~g~v~~~~~~~l~~~~~l~ls~~~d~~~~~------~~~k~G~~l~~~ 273 (274)
+-|....+++.+..++++.+.+.++....-++-+ ..+.+++++.++
T Consensus 329 r~D~~~~~~~~~~y~~~r~~~~~~~y~~~~~~S~~~~~~y~~n~v~l~l~~~ 380 (381)
T PF10082_consen 329 REDDTYSAGLGLTYRLNRWLSLSAGYRYEDRDSNIPSYDYDRNRVGLGLTYQ 380 (381)
T ss_pred ceeeEEEEEEEEEEEecCCEEEEEEEEEEEeeCCCCCCceEeEEEEEEEEEE
Confidence 7788889999999999999999999888775422 258888888774
No 17
>PF11383 DUF3187: Protein of unknown function (DUF3187); InterPro: IPR021523 This family of proteins with unknown function appear to be restricted to Proteobacteria.
Probab=89.53 E-value=16 Score=33.13 Aligned_cols=65 Identities=8% Similarity=0.136 Sum_probs=38.3
Q ss_pred ccEEEEEEEEeeCCCCeEEEEecC--------------CceEEEEEEEEeeCCeEEEEEEEEecCCCCCCCeeEEEEEE
Q 023992 208 QNSFTIGSSHLVDPLTLVKTRLSD--------------GGKFAVQFQREWRPKSLVTVSAEYDSKAINSAPKMGLAIAL 272 (274)
Q Consensus 208 ~~~~~vg~~~~ld~~~~~Kakv~s--------------~g~v~~~~~~~l~~~~~l~ls~~~d~~~~~~~~k~G~~l~~ 272 (274)
.-...+|++|++.++..++++++. ...+.+.|+.++.++..+.++..=|.-+.+..+-|+|.+.+
T Consensus 237 ~~~~~~g~~y~~~~~~~l~~q~~~~qg~~~~~~~l~~~s~e~~lG~r~~~~~~~alei~~~En~~~~dnS~Diaf~l~l 315 (319)
T PF11383_consen 237 TWFGGLGYGYQLTENHSLLAQYDYYQGFYDSSSELSEPSNELTLGYRYQLSERSALEISVIENLFNVDNSPDIAFHLGL 315 (319)
T ss_pred eEEEEEEEEEEecCCEEEEEEEEEeeccccCchhhcccceEEEeeeEEEEcCCceEEEEEEecccccCCCCCeEEEEEE
Confidence 345566666666666666666543 24466777777777777777666665344444555555443
No 18
>PF12519 DUF3722: Protein of unknown function (DUF3722) ; InterPro: IPR022197 This family of proteins is found in eukaryotes. Proteins in this family are typically between 415 and 473 amino acids in length.
Probab=88.98 E-value=1.1 Score=39.15 Aligned_cols=64 Identities=13% Similarity=0.222 Sum_probs=53.6
Q ss_pred CCeEEEEEEEEeccCCcceeeEEEEeeec------CCcEEEEEEccCcCeEEEEEEEEeCCcceEEEEEEE
Q 023992 138 KELVLGGEVGFDTASASFIKYTAGIGLNK------PDFSAALLLADKGQALKASYIHAVDPFTSVAAEMTH 202 (274)
Q Consensus 138 ~~~~lG~e~~yd~~~~~~~~~~~~~~Y~~------~~~~~~~~~~~~~~~~~~S~~~kvs~~~~~g~e~~~ 202 (274)
..|.+|+|+-|-..... ...+.++||.+ ..+++++++++-++.+..+|--|.++.++++.++.+
T Consensus 190 ~r~S~GaE~yys~~~ks-~G~STglRf~Tlp~~tg~PlTlTlt~NPl~GhiSstYs~k~s~~~a~~SrfdF 259 (260)
T PF12519_consen 190 GRFSAGAELYYSALNKS-PGCSTGLRFCTLPAHTGKPLTLTLTLNPLMGHISSTYSVKASPNSAFCSRFDF 259 (260)
T ss_pred ceEeeccEEEEEeeccC-CcccceeEEEecCCCCCCCeEEEEEeccccccchheeeeeccCCceEEeeccc
Confidence 38999999988765554 47889999963 579999999998899999999999999998887654
No 19
>COG2067 FadL Long-chain fatty acid transport protein [Lipid metabolism]
Probab=86.48 E-value=14 Score=35.02 Aligned_cols=75 Identities=12% Similarity=0.014 Sum_probs=51.7
Q ss_pred CeEEEEEEEEeCCcceEEEEEEEEeccCccEEEEEEEEeeCCCCeEEEEec---CCceEEEEEEEEeeCCeEEEEEEEEe
Q 023992 180 QALKASYIHAVDPFTSVAAEMTHRFSTYQNSFTIGSSHLVDPLTLVKTRLS---DGGKFAVQFQREWRPKSLVTVSAEYD 256 (274)
Q Consensus 180 ~~~~~S~~~kvs~~~~~g~e~~~~~~~~~~~~~vg~~~~ld~~~~~Kakv~---s~g~v~~~~~~~l~~~~~l~ls~~~d 256 (274)
+.+..+++|+++|++++...+.|..=++=..+++=.. +....+....+ +.+++++.-++++++.+++..+...|
T Consensus 286 ~~~el~~~~~~~d~w~~~~s~~wT~WS~f~~l~~~~~---~~~~~~~~~~~~yrD~wt~a~G~~Y~~nd~~tlragiayD 362 (440)
T COG2067 286 ASAELSGQHKVADQWAIHGSVKWTDWSSFDKLDFVFT---FGKTLFAKTEDGYRDTWTVALGTTYKFNDQWTLRAGIAYD 362 (440)
T ss_pred cEEEEeeeeccCCCeEEEEEEEEeeccCCceEEEEEc---CCCccccccccccccccEEeeeceeEcCccceEeeeeeec
Confidence 6788899999999999999999975443333333322 23333444333 56777777777777777777777777
Q ss_pred c
Q 023992 257 S 257 (274)
Q Consensus 257 ~ 257 (274)
.
T Consensus 363 ~ 363 (440)
T COG2067 363 Q 363 (440)
T ss_pred C
Confidence 6
No 20
>PF03349 Toluene_X: Outer membrane protein transport protein (OMPP1/FadL/TodX); InterPro: IPR005017 This family includes TodX from Pseudomonas putida (strain F1/ATCC 700007) Q51971 from SWISSPROT and TbuX from Burkholderia pickettii (Ralstonia pickettii) (Pseudomonas pickettii) PKO1 Q9RBW8 from SWISSPROT. These are membrane proteins of uncertain function that are involved in toluene catabolism. Related proteins involved in the degradation of similar aromatic hydrocarbons are also in this family, such as CymD O33458 from SWISSPROT.; PDB: 2R88_A 1T16_B 2R4N_B 2R4P_B 3PGU_A 2R4L_A 3DWN_B 2R4O_A 3PF1_B 3PGS_A ....
Probab=85.08 E-value=32 Score=31.89 Aligned_cols=79 Identities=10% Similarity=0.020 Sum_probs=50.0
Q ss_pred CeEEEEEEEEeCCcceEEEEEEEEeccC-ccEEEEEEEEee---CCCCeEEEEecCCceEEEEEEEEeeCCeEEEEEEEE
Q 023992 180 QALKASYIHAVDPFTSVAAEMTHRFSTY-QNSFTIGSSHLV---DPLTLVKTRLSDGGKFAVQFQREWRPKSLVTVSAEY 255 (274)
Q Consensus 180 ~~~~~S~~~kvs~~~~~g~e~~~~~~~~-~~~~~vg~~~~l---d~~~~~Kakv~s~g~v~~~~~~~l~~~~~l~ls~~~ 255 (274)
..+.+++.|++++++.+.++++|..=+. +........... .....+.-.-.+.+.+.+..+++++|.+++..+...
T Consensus 270 ~~~~~g~~~~~~~~~~l~~d~~~~~WS~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~lG~~Y~~~~~l~lr~G~~y 349 (427)
T PF03349_consen 270 ASLSLGVAYRFTDKLLLSADYEWTDWSSFDNLYNDQFTFANGNGSTNNNIPFNWKDTWVYRLGAEYKFNDKLTLRAGYAY 349 (427)
T ss_dssp EEEEEEEEEESSSSEEEEEEEEEEEGGG-SCEEEEEEEETTECTEEEEEEE---EEEEEEEEEEEEESSSSEEEEEEEEE
T ss_pred eeEEEEEEEecCCCEEEEEEEEEEEhhhhhhhcccccccccccccccccCCCCccchheeeeeeEEEcCcCEEEEEEEEE
Confidence 6788999999999999999999974222 211111111110 012234444555677888888888888888888888
Q ss_pred ecC
Q 023992 256 DSK 258 (274)
Q Consensus 256 d~~ 258 (274)
|..
T Consensus 350 ~~s 352 (427)
T PF03349_consen 350 DSS 352 (427)
T ss_dssp EE-
T ss_pred ecc
Confidence 873
No 21
>COG2067 FadL Long-chain fatty acid transport protein [Lipid metabolism]
Probab=83.91 E-value=40 Score=32.01 Aligned_cols=21 Identities=14% Similarity=0.115 Sum_probs=13.3
Q ss_pred EEEEcccCCCeEEEEEEEecC
Q 023992 80 KVTMVDILPSTKAALSFRIPD 100 (274)
Q Consensus 80 ~i~~~~~~~glk~~~~~~~p~ 100 (274)
.++.++...|..+.+...+++
T Consensus 212 ~~~g~~~g~G~~lG~~ye~~d 232 (440)
T COG2067 212 RLKGEDWGFGWNLGVAYEIND 232 (440)
T ss_pred ccccccccceeEEEEEEccCc
Confidence 344444777877777776665
No 22
>PF04338 DUF481: Protein of unknown function, DUF481; InterPro: IPR007433 This family includes several proteins of uncharacterised function.
Probab=80.47 E-value=18 Score=29.78 Aligned_cols=21 Identities=14% Similarity=0.214 Sum_probs=12.7
Q ss_pred EEEEEEeeCCeEEEEEEEEec
Q 023992 237 VQFQREWRPKSLVTVSAEYDS 257 (274)
Q Consensus 237 ~~~~~~l~~~~~l~ls~~~d~ 257 (274)
+.++.+|.+.+.+.++.+.+.
T Consensus 167 ~~l~~~l~~~l~l~~~~~~~y 187 (210)
T PF04338_consen 167 TGLKVKLTKNLSLSLSYNYDY 187 (210)
T ss_pred EEEEEEEeccEEEEEEEEEEE
Confidence 445556666666666666655
No 23
>PF13609 Porin_4: Gram-negative porin; PDB: 2FGR_A 2FGQ_X 1E54_A 2POR_A 3POR_A 1PRN_A 6PRN_A 8PRN_A 1H6S_1 3PRN_A ....
Probab=78.49 E-value=45 Score=29.11 Aligned_cols=48 Identities=10% Similarity=0.165 Sum_probs=29.2
Q ss_pred CccEEEEEEEEeeCCCCeEEEEecC----------CceEEEEEEEEeeCCeEEEEEEEE
Q 023992 207 YQNSFTIGSSHLVDPLTLVKTRLSD----------GGKFAVQFQREWRPKSLVTVSAEY 255 (274)
Q Consensus 207 ~~~~~~vg~~~~ld~~~~~Kakv~s----------~g~v~~~~~~~l~~~~~l~ls~~~ 255 (274)
......+++.|.+ +..++.+.... .-.+++.+++++.|++++-+....
T Consensus 248 ~~~~~~~~~~Y~~-~~~~~~~~y~~~~~~~~~~~~~~~~~~g~~Y~~~~~~~~~a~y~~ 305 (311)
T PF13609_consen 248 DQDAYYVGAAYTF-GKWTLYAGYGYSDSADGSDDDATSYAVGVDYDFSKNTSLYAEYAY 305 (311)
T ss_dssp EEEEEEEEEEEEE-TTEEEEEEEEEEEE-GCCTEEEEEEEEEEEEEEETTEEEEEEEEE
T ss_pred cceEEEEEEEEEe-CCEEEEEEEEEEEccCCCCCCeEEEEEEEEEEcCCCEEEEEEEEE
Confidence 3345666666766 44555555432 234777788888888776665443
No 24
>cd00342 gram_neg_porins Porins form aqueous channels for the diffusion of small hydrophillic molecules across the outer membrane. Individual 16-strand anti-parallel beta-barrels form a central pore, and trimerizes thru mainly hydrophobic interactions at the interface. Trimers are stabilized by hytrophillic clamping of Loop L2. Loop 3 bends into the pore, creating an elliptical constriction of about 7 x 11A, large enough to allow passage of a glucose molecule without steric hindrance. Removal of the C-terminal residue (usuallly F) destabilizes the trimer and removal of the 16th beta-sheet abolishes trimerization. Unlike typical membrane proteins, porins lack long hydrophobic stretches. Short turns are found at the smooth, periplasmic end, longer irregular loops are found at the rough, extracellular end. C-terminal residue forms salt bridge with N-terminus.
Probab=76.68 E-value=53 Score=28.99 Aligned_cols=48 Identities=10% Similarity=0.046 Sum_probs=30.6
Q ss_pred eEEEEEEEEeCCcceEEEEEEEEec-------cCccEEEEEEEEeeCCCCeEEEE
Q 023992 181 ALKASYIHAVDPFTSVAAEMTHRFS-------TYQNSFTIGSSHLVDPLTLVKTR 228 (274)
Q Consensus 181 ~~~~S~~~kvs~~~~~g~e~~~~~~-------~~~~~~~vg~~~~ld~~~~~Kak 228 (274)
.+.++.-+++++.+.+.+...+... .....+.+|+.|.+.+.+.+-+-
T Consensus 238 ~~~lga~Y~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~G~~Y~~~~~~~l~~~ 292 (329)
T cd00342 238 GYELGATYQLTPALRLGAAYYYTKDRNDGGGDGKANQVALGADYALSKRTDLYAE 292 (329)
T ss_pred EEEEeEEEEcCCceEEEEEEEEEeccCCCCCCCCeEEEEEEEeEeeccchhheee
Confidence 3455666677766777776665432 23457888888888776655433
No 25
>PF04357 DUF490: Family of unknown function (DUF490); InterPro: IPR007452 This family contains several proteins of uncharacterised function.
Probab=76.06 E-value=24 Score=32.13 Aligned_cols=60 Identities=3% Similarity=0.053 Sum_probs=34.9
Q ss_pred EEEEEEEEeCCcceEEEEEEEEeccCccEEEEEEEEeeCCCCeEEEEecCC--ce-EEEEEEEE
Q 023992 182 LKASYIHAVDPFTSVAAEMTHRFSTYQNSFTIGSSHLVDPLTLVKTRLSDG--GK-FAVQFQRE 242 (274)
Q Consensus 182 ~~~S~~~kvs~~~~~g~e~~~~~~~~~~~~~vg~~~~ld~~~~~Kakv~s~--g~-v~~~~~~~ 242 (274)
....+=.++++++.+..+........ ..-.+..+|+|++...+++++++. +. +++.|+.+
T Consensus 316 ~~~~~gk~l~~~l~i~~~~~~~~~~~-~~~~~~l~y~l~~~~~l~~~~~~~~~~~g~~l~y~~~ 378 (379)
T PF04357_consen 316 TSVTVGKYLSDRLYISYQFGVDLGGS-QTGEFSLEYRLNPNLSLRGSSDSGNTSQGVDLIYRKD 378 (379)
T ss_pred eEEEEEEecCCCEEEEEEEeecCCCC-ceEEEEEEEEEcCCEEEEEEEEcCCCceEEEEEEEEE
Confidence 44455555667766666655543222 113566677777777777777554 54 55555544
No 26
>cd00342 gram_neg_porins Porins form aqueous channels for the diffusion of small hydrophillic molecules across the outer membrane. Individual 16-strand anti-parallel beta-barrels form a central pore, and trimerizes thru mainly hydrophobic interactions at the interface. Trimers are stabilized by hytrophillic clamping of Loop L2. Loop 3 bends into the pore, creating an elliptical constriction of about 7 x 11A, large enough to allow passage of a glucose molecule without steric hindrance. Removal of the C-terminal residue (usuallly F) destabilizes the trimer and removal of the 16th beta-sheet abolishes trimerization. Unlike typical membrane proteins, porins lack long hydrophobic stretches. Short turns are found at the smooth, periplasmic end, longer irregular loops are found at the rough, extracellular end. C-terminal residue forms salt bridge with N-terminus.
Probab=74.49 E-value=61 Score=28.61 Aligned_cols=73 Identities=11% Similarity=0.108 Sum_probs=44.4
Q ss_pred EEEEEEeCCcceEEEEEEEEec--------cCccEEEEEEEEeeCCCCeEEEEec------------CCceEEEEEEEEe
Q 023992 184 ASYIHAVDPFTSVAAEMTHRFS--------TYQNSFTIGSSHLVDPLTLVKTRLS------------DGGKFAVQFQREW 243 (274)
Q Consensus 184 ~S~~~kvs~~~~~g~e~~~~~~--------~~~~~~~vg~~~~ld~~~~~Kakv~------------s~g~v~~~~~~~l 243 (274)
+..-....+ +.+++...+.-. .......+|+.|.+.+...+.+-.. ..-.+.+..++.+
T Consensus 205 ~ga~Y~~~~-~~v~a~y~~~~~~~~~~~~~~~~~~~~lga~Y~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~G~~Y~~ 283 (329)
T cd00342 205 AGASYDFGG-LKLGAGYTNTRNDNGGGGGSAKFNGYELGATYQLTPALRLGAAYYYTKDRNDGGGDGKANQVALGADYAL 283 (329)
T ss_pred EEEEEEEcc-EEEEEEEEEEEccCCCCCCceEEEEEEEeEEEEcCCceEEEEEEEEEeccCCCCCCCCeEEEEEEEeEee
Confidence 333334443 666666555421 1234677888888865566655331 1235788899999
Q ss_pred eCCeEEEEEEEEec
Q 023992 244 RPKSLVTVSAEYDS 257 (274)
Q Consensus 244 ~~~~~l~ls~~~d~ 257 (274)
.|.+.+-+....+.
T Consensus 284 ~~~~~l~~~y~~~~ 297 (329)
T cd00342 284 SKRTDLYAEYGYQK 297 (329)
T ss_pred ccchhheeeeeeee
Confidence 99987776666554
No 27
>PF11854 DUF3374: Protein of unknown function (DUF3374); InterPro: IPR020016 Members of this protein family are integral proteins of the bacterial outer membrane, associated with multi-haem c-type cytochromes involved in electron transfer [, ]. The MtrB protein of Shewanella oneidensis MR-1 (SO1776) has been shown to form a complex with 1:1:1 stochiometry with the small, periplasmic decahaem cytochrome MtrA and large, surface-exposed decahaem cytochrome MtrC.
Probab=71.27 E-value=1.2e+02 Score=30.43 Aligned_cols=104 Identities=18% Similarity=0.139 Sum_probs=56.6
Q ss_pred CceEEEEEEcCCceEEEEEeeCCCCCe--eeEEEEE-ccCCeEEEEEEEEeccCCcceeeEEEEeeecCCcEEEEEEccC
Q 023992 102 KSGKLDLQYLHPHAAIDSSIGLNPTPL--LELSATI-GSKELVLGGEVGFDTASASFIKYTAGIGLNKPDFSAALLLADK 178 (274)
Q Consensus 102 ~~~~~~~~y~~~~~~~~~~~~l~~~p~--~~~s~~~-~~~~~~lG~e~~yd~~~~~~~~~~~~~~Y~~~~~~~~~~~~~~ 178 (274)
-+..+..+|..+++.- ..+++..... ++.++.+ ..+.+.+-+-+.++.-..... -..++..++| ...+.++
T Consensus 447 l~l~~~~~~~~DdY~~-t~~GL~~~~~~~~~ld~~y~~~~~l~~~af~~~q~~~s~Q~---gs~~~~~~~W--~~~~~D~ 520 (637)
T PF11854_consen 447 LSLSLSGRYANDDYDD-TDIGLTESDDYGYDLDASYQPSDDLSLYAFYNQQWIDSDQA---GSQNFSTPDW--TSDTEDK 520 (637)
T ss_pred eEEeEEEEEccCCCCC-cccccccceeeeeeeeEEEEECCCeEEEEEEEeEeehhhhc---cccCccCCCc--cccccce
Confidence 3566777777777654 3355542111 2222222 256666666666654332211 1122334555 4444555
Q ss_pred cCeEEEEEEEE--eCCcceEEEEEEEEeccCccEE
Q 023992 179 GQALKASYIHA--VDPFTSVAAEMTHRFSTYQNSF 211 (274)
Q Consensus 179 ~~~~~~S~~~k--vs~~~~~g~e~~~~~~~~~~~~ 211 (274)
...+.+.+-+. +.+++.+|+..+|.....+..+
T Consensus 521 ~~~~G~G~~~~~l~~~kL~lg~dYsys~~~s~~~~ 555 (637)
T PF11854_consen 521 VTTVGAGFSYQGLMDDKLSLGLDYSYSDSDSDTDV 555 (637)
T ss_pred eEEEEeceEeecccCccEEEeeeEEEecCccceEe
Confidence 56666555554 6888999999999866544444
No 28
>PF13557 Phenol_MetA_deg: Putative MetA-pathway of phenol degradation
Probab=70.80 E-value=64 Score=27.25 Aligned_cols=39 Identities=8% Similarity=0.011 Sum_probs=24.8
Q ss_pred ceEEEEEEEEeeCCeEEEEEEEEecCCCCCCCeeEEEEEEc
Q 023992 233 GKFAVQFQREWRPKSLVTVSAEYDSKAINSAPKMGLAIALK 273 (274)
Q Consensus 233 g~v~~~~~~~l~~~~~l~ls~~~d~~~~~~~~k~G~~l~~~ 273 (274)
-.++......+.|++.+.++...+.. ....-.|.++.++
T Consensus 209 ~~~~~gv~y~~~~~~~l~~~~~~~~~--~~~~~~~~~~~~r 247 (248)
T PF13557_consen 209 FYLGPGVSYQLSPNLSLDAGVGRGLA--ARNTFEGNGVQLR 247 (248)
T ss_pred EEEEEEEEEEEcCCeEEEEEEEeeee--ccceeeeeEEEEe
Confidence 34667777788888777777777762 2345555555543
No 29
>PF10082 DUF2320: Uncharacterized protein conserved in bacteria (DUF2320); InterPro: IPR018759 This domain has no known function.
Probab=69.97 E-value=88 Score=28.53 Aligned_cols=79 Identities=15% Similarity=0.248 Sum_probs=54.4
Q ss_pred ceEEEEEEEEeccCccEEEEEEEEeeCCCCeEEEEecCCceEEEEEEEEeeCCeEEEEEEEEecCCCCC------CCeeE
Q 023992 194 TSVAAEMTHRFSTYQNSFTIGSSHLVDPLTLVKTRLSDGGKFAVQFQREWRPKSLVTVSAEYDSKAINS------APKMG 267 (274)
Q Consensus 194 ~~~g~e~~~~~~~~~~~~~vg~~~~ld~~~~~Kakv~s~g~v~~~~~~~l~~~~~l~ls~~~d~~~~~~------~~k~G 267 (274)
+.+.+.+.|.+. +.+++++.+...+.+....-+--...-.+.+...|+|++++++.+++.....+..+ -+.+|
T Consensus 259 ~~~~~~l~w~pt-~~t~~~l~~~r~~~~~~~~~~~~~~~~~~~~~~~h~~~~~l~~~~~~~~~~~~y~~~~r~D~~~~~~ 337 (381)
T PF10082_consen 259 PSWDASLTWSPT-PKTTVTLSASRSIEESTDAGGSYVRTTSVSLGWTHQLTPRLSLSLSAGYENRDYQGSDREDDTYSAG 337 (381)
T ss_pred eEEEEEEEEecc-CceEEEEEEEEEEcCcccCCCcEEEEEEEEEEEEEEeeeeEEEEEEEEEEEeEcCCCCceeeEEEEE
Confidence 667777777764 45788888888885543333333334567888899999999999999988766532 35666
Q ss_pred EEEEEc
Q 023992 268 LAIALK 273 (274)
Q Consensus 268 ~~l~~~ 273 (274)
+++...
T Consensus 338 ~~~~y~ 343 (381)
T PF10082_consen 338 LGLTYR 343 (381)
T ss_pred EEEEEE
Confidence 666554
No 30
>PF03349 Toluene_X: Outer membrane protein transport protein (OMPP1/FadL/TodX); InterPro: IPR005017 This family includes TodX from Pseudomonas putida (strain F1/ATCC 700007) Q51971 from SWISSPROT and TbuX from Burkholderia pickettii (Ralstonia pickettii) (Pseudomonas pickettii) PKO1 Q9RBW8 from SWISSPROT. These are membrane proteins of uncertain function that are involved in toluene catabolism. Related proteins involved in the degradation of similar aromatic hydrocarbons are also in this family, such as CymD O33458 from SWISSPROT.; PDB: 2R88_A 1T16_B 2R4N_B 2R4P_B 3PGU_A 2R4L_A 3DWN_B 2R4O_A 3PF1_B 3PGS_A ....
Probab=68.98 E-value=98 Score=28.65 Aligned_cols=30 Identities=13% Similarity=0.224 Sum_probs=15.0
Q ss_pred EEEecCCceEEEEEEEEeeCCeEEEEEEEE
Q 023992 226 KTRLSDGGKFAVQFQREWRPKSLVTVSAEY 255 (274)
Q Consensus 226 Kakv~s~g~v~~~~~~~l~~~~~l~ls~~~ 255 (274)
+.+++-=..+.+.+.+++.|++.+.++.+.
T Consensus 263 ~~~~~~P~~~~~g~~~~~~~~~~l~~d~~~ 292 (427)
T PF03349_consen 263 EVDLDLPASLSLGVAYRFTDKLLLSADYEW 292 (427)
T ss_dssp EEEEEB-EEEEEEEEEESSSSEEEEEEEEE
T ss_pred eeeeeeceeEEEEEEEecCCCEEEEEEEEE
Confidence 344444455555555555555555555444
No 31
>PRK03761 LPS assembly outer membrane complex protein LptD; Provisional
Probab=61.68 E-value=1e+02 Score=31.55 Aligned_cols=98 Identities=12% Similarity=0.036 Sum_probs=63.8
Q ss_pred cCCeEEEEEEEEeccCCcceeeEEEEeeecCCc-EEEEEEc---------------------cCcCeEEEEEEEEeCCcc
Q 023992 137 SKELVLGGEVGFDTASASFIKYTAGIGLNKPDF-SAALLLA---------------------DKGQALKASYIHAVDPFT 194 (274)
Q Consensus 137 ~~~~~lG~e~~yd~~~~~~~~~~~~~~Y~~~~~-~~~~~~~---------------------~~~~~~~~S~~~kvs~~~ 194 (274)
.+.|.+.+++.||.....+.+.++.++|..+.. .+.+... .....+.+|...++++++
T Consensus 612 ~~~~~~~~~~~~d~~~~~~~r~~~~l~y~~~~~~~~~~~Yry~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~w 691 (778)
T PRK03761 612 SDRWGLRGGIQYDTRLDSVALANSSLEYRRDEDRLIQLNYRYASPEYIQATLPSYYSAEIYQQGISQVGAVASWPIADRW 691 (778)
T ss_pred cCCEEEeeeEEECCCCChhheEEEEEEEeCCCCcEEEeEeEEecchhhhcccccccccccccCCcceeeEEEEEEecCcE
Confidence 678999999999998888888999999876554 3332210 001346677777788888
Q ss_pred eEEEEEEEEeccC-ccEEEEEEEEeeCCCCeEEEEecCCceEEEEEEEEeeC
Q 023992 195 SVAAEMTHRFSTY-QNSFTIGSSHLVDPLTLVKTRLSDGGKFAVQFQREWRP 245 (274)
Q Consensus 195 ~~g~e~~~~~~~~-~~~~~vg~~~~ld~~~~~Kakv~s~g~v~~~~~~~l~~ 245 (274)
.+.+...|++..+ .....+|.+|.= .+ +.+.++|++.+.+
T Consensus 692 ~~~g~~~ydl~~~~~~~~~~Gl~Y~~--~C---------w~~~~~~~r~~~~ 732 (778)
T PRK03761 692 SIVGAYYYDTKANKPAEQLLGLQYNS--CC---------WAIGVGYERKLTG 732 (778)
T ss_pred EEEEEEEeeCcCChhhhhhcCeeecC--ce---------EEEEEEEEEEecc
Confidence 8888888876543 334455555532 11 4556667766543
No 32
>PF14052 Caps_assemb_Wzi: Capsule assembly protein Wzi
Probab=61.00 E-value=73 Score=30.08 Aligned_cols=42 Identities=14% Similarity=0.215 Sum_probs=29.8
Q ss_pred CceEEEEEE-EEeeCCeEEEEEEEEecCCCC-CCCeeEEEEEEc
Q 023992 232 GGKFAVQFQ-REWRPKSLVTVSAEYDSKAIN-SAPKMGLAIALK 273 (274)
Q Consensus 232 ~g~v~~~~~-~~l~~~~~l~ls~~~d~~~~~-~~~k~G~~l~~~ 273 (274)
...+.+.|+ ..+.+.+.+.++...|.-++. ....+|++|.++
T Consensus 399 ~~~~~~~~~~~~~~~~~~l~~~~~~d~~~~~~~~~~~g~~l~~~ 442 (443)
T PF14052_consen 399 SFYLELSYQSPSLNGGWSLGASVGYDNGDIPLYDDNFGAGLSVR 442 (443)
T ss_pred EEEEEEEEEcccccCCEEEEEEEEEecccccccCCCCCcEEEEe
Confidence 345666663 677788999999999985443 457777777664
No 33
>TIGR03519 Bac_Flav_fam_1 Bacteroidetes-specific putative membrane protein. This model describes a protein family unique to, and greatly expanded in, the Bacteriodetes. Species in this lineage include several, such as Cytophaga hutchinsonii and Flavobacterium johnsoniae, that exhibit a poorly understood rapid gliding phenotype. Several members of this protein family are found in operons with other genes whose loss leads to a loss a this motility.
Probab=57.41 E-value=1.4e+02 Score=26.47 Aligned_cols=62 Identities=5% Similarity=0.057 Sum_probs=39.1
Q ss_pred cceEEEEEEEEeccCccEEEEEEEEeeCCCCeEEEEecCCceEEEEEEEEeeCCeEEEEEEEEecCCCC----CCCeeEE
Q 023992 193 FTSVAAEMTHRFSTYQNSFTIGSSHLVDPLTLVKTRLSDGGKFAVQFQREWRPKSLVTVSAEYDSKAIN----SAPKMGL 268 (274)
Q Consensus 193 ~~~~g~e~~~~~~~~~~~~~vg~~~~ld~~~~~Kakv~s~g~v~~~~~~~l~~~~~l~ls~~~d~~~~~----~~~k~G~ 268 (274)
++.+++++.+. ..+.+|+.|+.++ -+.+...-++.+++.+..+-++...++. +.|-+.+
T Consensus 226 ~~d~~~~~~~~-----~~~~~G~~Yr~~~------------ai~~~~G~~~~~~~~igysYd~~~s~l~~~~~gshEi~l 288 (292)
T TIGR03519 226 QLDLGANALYN-----DKLWAGAGYRGND------------AVIGLVGFNLNKRLSIGYSYDFSTSSLSAYNGGSHEISV 288 (292)
T ss_pred EEEEeEEEEEe-----eeEEEEEEecCCC------------cEEEEEEEEeCCCEEEEEEEeeEcccccCCCCCcEEEEE
Confidence 47777777774 2378888888632 2455555566666777777766664432 4677777
Q ss_pred EEE
Q 023992 269 AIA 271 (274)
Q Consensus 269 ~l~ 271 (274)
++.
T Consensus 289 ~y~ 291 (292)
T TIGR03519 289 SYR 291 (292)
T ss_pred EEe
Confidence 664
No 34
>PRK04423 organic solvent tolerance protein; Provisional
Probab=56.47 E-value=1.6e+02 Score=30.33 Aligned_cols=82 Identities=13% Similarity=0.039 Sum_probs=56.6
Q ss_pred cCCeEEEEEEEEeccCCcceeeEEEEeeecC-CcEEEEEEc---------cCcCeEEEEEEEEeCCcceEEEEEEEEecc
Q 023992 137 SKELVLGGEVGFDTASASFIKYTAGIGLNKP-DFSAALLLA---------DKGQALKASYIHAVDPFTSVAAEMTHRFST 206 (274)
Q Consensus 137 ~~~~~lG~e~~yd~~~~~~~~~~~~~~Y~~~-~~~~~~~~~---------~~~~~~~~S~~~kvs~~~~~g~e~~~~~~~ 206 (274)
.+.|.+.+++.||...+.+.+.++.++|..+ ...+.+... +....+.+|.-.+++++|.+.+...|++..
T Consensus 628 ~~~~~l~~~~~~d~~~~r~~~~~~~~~y~~~~~~~~nl~Yry~~~~~~~~~~~eq~~~s~~~pi~~~W~~~g~~~ydl~~ 707 (798)
T PRK04423 628 NDRWTLGATYQWNPNSRREDLASLRTRYLLPNDGIINLAYRYRRNLIDNSDQLKQADFSFLYPINPRWSAVGRYYYSLLD 707 (798)
T ss_pred cCcEEEEeEEEECCccCcceeEEEEEEEcCCCCcEEEEEEEEecccccccCChhheeEEEEEEecCCEEEEEEEEEeCcC
Confidence 6789999999999887777777888888654 334433331 112467788888889999999988888754
Q ss_pred C-ccEEEEEEEEe
Q 023992 207 Y-QNSFTIGSSHL 218 (274)
Q Consensus 207 ~-~~~~~vg~~~~ 218 (274)
+ .....+|.+|.
T Consensus 708 ~~~~e~~~GleY~ 720 (798)
T PRK04423 708 KKPLEIIGGVQWD 720 (798)
T ss_pred CcchhhhcCcEEc
Confidence 3 33444555553
No 35
>PF11383 DUF3187: Protein of unknown function (DUF3187); InterPro: IPR021523 This family of proteins with unknown function appear to be restricted to Proteobacteria.
Probab=55.62 E-value=1.6e+02 Score=26.67 Aligned_cols=68 Identities=10% Similarity=0.006 Sum_probs=47.1
Q ss_pred eEEEEEEEEeCCcceEEEEEEEEec---------cCccEEEEEEEEeeCCCCeEEEEecCCceEEEEEEEEeeCCeEEEE
Q 023992 181 ALKASYIHAVDPFTSVAAEMTHRFS---------TYQNSFTIGSSHLVDPLTLVKTRLSDGGKFAVQFQREWRPKSLVTV 251 (274)
Q Consensus 181 ~~~~S~~~kvs~~~~~g~e~~~~~~---------~~~~~~~vg~~~~ld~~~~~Kakv~s~g~v~~~~~~~l~~~~~l~l 251 (274)
.+.++|=.+++++..+-+|+.+.-. +....+++|++|++.+.+.+-.-+-.|.. ...=+|.|+|.+
T Consensus 239 ~~~~g~~y~~~~~~~l~~q~~~~qg~~~~~~~l~~~s~e~~lG~r~~~~~~~alei~~~En~~-----~~dnS~Diaf~l 313 (319)
T PF11383_consen 239 FGGLGYGYQLTENHSLLAQYDYYQGFYDSSSELSEPSNELTLGYRYQLSERSALEISVIENLF-----NVDNSPDIAFHL 313 (319)
T ss_pred EEEEEEEEEecCCEEEEEEEEEeeccccCchhhcccceEEEeeeEEEEcCCceEEEEEEeccc-----ccCCCCCeEEEE
Confidence 3557888899999999998888632 35678999999999777766666655541 112246666665
Q ss_pred EE
Q 023992 252 SA 253 (274)
Q Consensus 252 s~ 253 (274)
+.
T Consensus 314 ~l 315 (319)
T PF11383_consen 314 GL 315 (319)
T ss_pred EE
Confidence 53
No 36
>TIGR03014 EpsL exopolysaccharide biosynthesis operon protein EpsL. The epsL gene is described as a component of the methanolan exopolysaccharide biosynthesis operon in Methylobacillus sp strain 12S, although no other information regarding its possible function is suggested. Homologs of this gene are found in several other exopolysaccharide operons in a small number of species. These operons contain a subset of the methanolan operon genes by homology and synteny, including the epsH gene which is proposed to act as an "exosortase" directing proteins with a C-terminal tag (PEP-CTERM) to the exopolysaccharide layer. Each of the genomes in which these genes and epsL are found also encode genes with these C-terminal tags.
Probab=55.61 E-value=1.7e+02 Score=27.02 Aligned_cols=92 Identities=8% Similarity=-0.008 Sum_probs=55.5
Q ss_pred CeEEEEEEEEeCCc----------ceEEEEEEEEeccCccEEEEEEEEeeCC--CCe---EEEEecCCceEEEEEEEEee
Q 023992 180 QALKASYIHAVDPF----------TSVAAEMTHRFSTYQNSFTIGSSHLVDP--LTL---VKTRLSDGGKFAVQFQREWR 244 (274)
Q Consensus 180 ~~~~~S~~~kvs~~----------~~~g~e~~~~~~~~~~~~~vg~~~~ld~--~~~---~Kakv~s~g~v~~~~~~~l~ 244 (274)
..++++..+.+.+- ..+++...|.. .....+.+++.|.-++ +.. ..++=|....+.+.+..+++
T Consensus 267 t~l~l~~sr~~~~~~~~~~~y~~~~~~~l~~~~~~-~~~v~~~~~~~y~~~dY~g~~~~~~~~R~D~~~~~~~~~~Y~~~ 345 (381)
T TIGR03014 267 TSLNAAISRELANYQTVTSSYYRNRGTSIGPTWQA-TSKIAVRGRLDYEERDFEGDPLVGPPARSDRTRSGSLSLDWSPV 345 (381)
T ss_pred EEEEEEEEeccCCccccccceEEEEEEEEeeEeec-cceEEEEEEEEEEEeeccCccccCCCccccceEEEEEEEEEEEc
Confidence 44666666665431 24455555555 3445667776666521 100 12477777888888888999
Q ss_pred CCeEEEEEEEEecCCCC------CCCeeEEEEEE
Q 023992 245 PKSLVTVSAEYDSKAIN------SAPKMGLAIAL 272 (274)
Q Consensus 245 ~~~~l~ls~~~d~~~~~------~~~k~G~~l~~ 272 (274)
+.+.+.+..+...++-+ ...-++|++.+
T Consensus 346 ~~~~~~l~~~~~~rdSN~~~~~yd~~~v~ls~~~ 379 (381)
T TIGR03014 346 RAVRISAAFQREKRDSNSDGFDFDSNSVSVSATL 379 (381)
T ss_pred ceEEEEEEEEEEeccCCCCCCceeeeEEEEEEEE
Confidence 99988888887775422 23556666554
No 37
>PF06178 KdgM: Oligogalacturonate-specific porin protein (KdgM); InterPro: IPR009331 This family consists of several bacterial proteins which are homologous to the oligogalacturonate-specific porin protein KdgM (Q934G3 from SWISSPROT) from Erwinia chrysanthemi. The phytopathogenic Gram-negative bacteria E. chrysanthemi secretes pectinases, which are able to degrade the pectic polymers of plant cell walls, and uses the degradation products as a carbon source for growth. KdgM is a major outer membrane protein, whose synthesis is strongly induced in the presence of pectic derivatives. KdgM behaves like a voltage-dependent porin that is slightly selective for anions and that exhibits fast block in the presence of trigalacturonate. In contrast to most porins, KdgM seems to be monomeric [].; PDB: 2WJQ_A 2WJR_A.
Probab=52.40 E-value=61 Score=27.62 Aligned_cols=76 Identities=11% Similarity=0.025 Sum_probs=41.7
Q ss_pred cCeEEEEEEEEeCCc--ceEEEEEEEEeccCccEEEEEEEEeeCCCCeEEEEe----------cCC--------ceEEEE
Q 023992 179 GQALKASYIHAVDPF--TSVAAEMTHRFSTYQNSFTIGSSHLVDPLTLVKTRL----------SDG--------GKFAVQ 238 (274)
Q Consensus 179 ~~~~~~S~~~kvs~~--~~~g~e~~~~~~~~~~~~~vg~~~~ld~~~~~Kakv----------~s~--------g~v~~~ 238 (274)
...+.++|..+++++ ++.|..+.+......=..-|-..|.++++..+-+|- +.+ -++.+-
T Consensus 61 g~E~~~~y~~k~~d~~~l~PG~~~~~~s~~~~yrPylk~~Y~fd~~~~~~~RYRy~~~~~~~~~~~~~~~~~~~~r~d~~ 140 (218)
T PF06178_consen 61 GNEFEISYRYKLNDNFTLQPGFSLESNSDGTQYRPYLKLGYKFDNGLSVSGRYRYDYQNYSSDDLDGDKDNNDRHRFDLW 140 (218)
T ss_dssp EEEEEEEE-EESSSSEEEEEEEEEEEETTEEEEEEEEEEEEEECTTEEEEEEEEEEEESS-EE-TTS-EE---EEEEEEE
T ss_pred eeEEEEEEEEEcCCCEEEecceEEEECCCccEEeeEEEEEEEecCCEEEEEEeecceEccCCcccCCccccCccEEEEEE
Confidence 577888999999887 555555554432211122333345555554443331 111 266667
Q ss_pred EEEEeeCCeEEEEEEE
Q 023992 239 FQREWRPKSLVTVSAE 254 (274)
Q Consensus 239 ~~~~l~~~~~l~ls~~ 254 (274)
+-.++.+.+.+..-..
T Consensus 141 i~Y~~~~~~~~~y~~~ 156 (218)
T PF06178_consen 141 IGYKFNDDWSLSYNPV 156 (218)
T ss_dssp EEEE-SSSEEEEEEEE
T ss_pred EEEEEcCCEEEEEEEE
Confidence 7778877777777766
No 38
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=50.49 E-value=2.9e+02 Score=28.11 Aligned_cols=39 Identities=8% Similarity=0.119 Sum_probs=25.4
Q ss_pred CCceEEEEEEEEee--CCeEEEEEEEEecCCCCCCCeeEEE
Q 023992 231 DGGKFAVQFQREWR--PKSLVTVSAEYDSKAINSAPKMGLA 269 (274)
Q Consensus 231 s~g~v~~~~~~~l~--~~~~l~ls~~~d~~~~~~~~k~G~~ 269 (274)
+...+++.|+|+|+ +.+.++.+...+-.--++..-.++.
T Consensus 716 ~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~YDg~~e~~~~ 756 (765)
T PRK10049 716 TGAITQLGYGQRISWNDVIDAGATLRWDKRPYDGDREHNLY 756 (765)
T ss_pred CCcceeeeeeeEEEEccceeeeeeeeecCCCCCCCcccCcE
Confidence 45668899977665 6788888877775444654443333
No 39
>PF03895 YadA_anchor: YadA-like C-terminal region; InterPro: IPR005594 This region represents the C-terminal 120 amino acids of a family of surface-exposed bacterial proteins. YadA, an adhesin from Yersinia, was the first member of this family to be characterised. UspA2 from Moraxella was second. The Eib immunoglobulin-binding proteins from E. coli were third, followed by the DsrA proteins of Haemophilus ducreyi, amongst others. These proteins are homologous at their C-terminal and have predicted signal sequences, but they diverge elsewhere. The C-terminal 9 amino acids, consisting of alternating hydrophobic amino acids ending in F or W, comprise a targeting motif for the outer membrane of the Gram negative cell envelope. This region is important for oligomerisation [].; PDB: 3LT6_C 3LT7_B 3H7X_D 3H7Z_A 2GR8_E 2GR7_F 3EMO_C 2XZR_A.
Probab=49.14 E-value=88 Score=21.75 Aligned_cols=25 Identities=16% Similarity=0.219 Sum_probs=13.5
Q ss_pred cCccEEEEEEEEeeCCCCeEEEEec
Q 023992 206 TYQNSFTIGSSHLVDPLTLVKTRLS 230 (274)
Q Consensus 206 ~~~~~~~vg~~~~ld~~~~~Kakv~ 230 (274)
..+..+.+|++|.++++..+++.+.
T Consensus 37 ~g~~A~A~G~~~~~~~~~~~~~~~s 61 (78)
T PF03895_consen 37 RGESAVAVGASYRPNENVMVNAGVS 61 (78)
T ss_dssp TTEEEEEEEEEEE-TSSEEEEEEEE
T ss_pred CCcccEEEEEEEEeCCCEEEEEEEE
Confidence 3555666666666655555555444
No 40
>PRK10993 outer membrane protease; Reviewed
Probab=48.72 E-value=2.1e+02 Score=25.94 Aligned_cols=180 Identities=12% Similarity=0.066 Sum_probs=90.1
Q ss_pred EEEEeCCCceEEEEEEcccCCCeEEEEEEE--ecCCCceEEEEE--------EcCCceEEEEEeeCCCCCeeeE-EEEEc
Q 023992 68 DVKVDTYSSVSTKVTMVDILPSTKAALSFR--IPDHKSGKLDLQ--------YLHPHAAIDSSIGLNPTPLLEL-SATIG 136 (274)
Q Consensus 68 ~~~~~t~~~l~~~i~~~~~~~glk~~~~~~--~p~~~~~~~~~~--------y~~~~~~~~~~~~l~~~p~~~~-s~~~~ 136 (274)
+.+.++...|++++..+ +.|.+++..+.. ++....-...-+ |.+...+-+..++--..=.++. ...+.
T Consensus 64 dW~~~n~~iik~~~~~~-~~~~lsl~a~gw~~l~s~~G~M~DyDWl~~~~~~wt~~S~h~~t~l~ya~e~dln~~~w~l~ 142 (314)
T PRK10993 64 DWKIKNAAIIKGDINWD-LLPRLSLGASGWTTLASGGGHMVDYDWLDSSQPGWTDRSHHPDTDLNYANEFDLNLKGWLLQ 142 (314)
T ss_pred eccccCceEEEeecccc-cccceEEeeeEEEEEecCCCccccccccCCCCCCCcceecCCCCchhhhhhcceecceeeec
Confidence 33344444566666655 788887777643 332111111112 2222222122222111112332 23456
Q ss_pred cCCeEEEEEEEEeccCCcceeeEEEEeeec--C---CcEEEEEEccCcCeEEEEEEEEeCCcceEEEEEEEEeccCccEE
Q 023992 137 SKELVLGGEVGFDTASASFIKYTAGIGLNK--P---DFSAALLLADKGQALKASYIHAVDPFTSVAAEMTHRFSTYQNSF 211 (274)
Q Consensus 137 ~~~~~lG~e~~yd~~~~~~~~~~~~~~Y~~--~---~~~~~~~~~~~~~~~~~S~~~kvs~~~~~g~e~~~~~~~~~~~~ 211 (274)
.++..+|.-+.|+-..-+ -.+.++.|.. . +-..+ + + .+....+|-|+..- .-+|...++... .-.+
T Consensus 143 ~~~yklG~~aGyqy~~~s--w~A~GG~y~Y~~~~~r~~~g~--f-P-d~~~~I~Y~Q~f~~-pyiGL~g~y~~~--~~ef 213 (314)
T PRK10993 143 NPNYRLGVMAGYQETRFS--WTAYGGSYIYSNGGFRDDIGT--F-P-DGERGIGYKQRFKM-PYIGLTGSYRYD--DFEF 213 (314)
T ss_pred CCCceeeeEeeeEEEece--eEccCceEEcCCCCCCCCccc--c-C-CCccceeeEEEecc-eeeeEEEEEEec--cEEE
Confidence 777888888888754333 3344555433 3 22222 2 3 25667899998843 233443344332 2223
Q ss_pred EEEEEEee-----------CCCCeEEEEecCCce--EEEEEEEEeeCCeEEEEEEEEec
Q 023992 212 TIGSSHLV-----------DPLTLVKTRLSDGGK--FAVQFQREWRPKSLVTVSAEYDS 257 (274)
Q Consensus 212 ~vg~~~~l-----------d~~~~~Kakv~s~g~--v~~~~~~~l~~~~~l~ls~~~d~ 257 (274)
....+|.. .++.++|-++++.-. +.+.....+.|++++-+++....
T Consensus 214 ~~~~kys~wv~a~d~D~H~lR~ltF~d~~~~s~y~~l~~~agY~vTp~~~v~v~~~y~~ 272 (314)
T PRK10993 214 GGLLKYSGWVSASDNDEHYLRNLTFRDKFKNSPYYSASINAGYYVTPNAKLYVEGAYNR 272 (314)
T ss_pred eeEeecceeEeecccchhhcccccchhcccCCceeEEEEEEeEEeCCCeEEEEEEEEEE
Confidence 22333321 145677777766533 46667778999988888877654
No 41
>TIGR03014 EpsL exopolysaccharide biosynthesis operon protein EpsL. The epsL gene is described as a component of the methanolan exopolysaccharide biosynthesis operon in Methylobacillus sp strain 12S, although no other information regarding its possible function is suggested. Homologs of this gene are found in several other exopolysaccharide operons in a small number of species. These operons contain a subset of the methanolan operon genes by homology and synteny, including the epsH gene which is proposed to act as an "exosortase" directing proteins with a C-terminal tag (PEP-CTERM) to the exopolysaccharide layer. Each of the genomes in which these genes and epsL are found also encode genes with these C-terminal tags.
Probab=48.49 E-value=2.3e+02 Score=26.26 Aligned_cols=26 Identities=4% Similarity=-0.140 Sum_probs=15.9
Q ss_pred eEEEEEEEEeeCCeEEEEEEEEecCC
Q 023992 234 KFAVQFQREWRPKSLVTVSAEYDSKA 259 (274)
Q Consensus 234 ~v~~~~~~~l~~~~~l~ls~~~d~~~ 259 (274)
.+.+.++.++.++-+|.+++.-....
T Consensus 254 ~~~~~~~w~pt~~t~l~l~~sr~~~~ 279 (381)
T TIGR03014 254 IGRLNADWMVTGKTSLNAAISRELAN 279 (381)
T ss_pred eEEEEEEEcccCcEEEEEEEEeccCC
Confidence 35566666666666666666665543
No 42
>PRK14574 hmsH outer membrane protein; Provisional
Probab=47.54 E-value=3.4e+02 Score=28.09 Aligned_cols=101 Identities=9% Similarity=-0.006 Sum_probs=69.7
Q ss_pred eeEEEEeeecCCcEEEEEEcc----CcCe--EEEEEEEEeCCcceEEEEEEEEec----------cCccEEEEEEEEeeC
Q 023992 157 KYTAGIGLNKPDFSAALLLAD----KGQA--LKASYIHAVDPFTSVAAEMTHRFS----------TYQNSFTIGSSHLVD 220 (274)
Q Consensus 157 ~~~~~~~Y~~~~~~~~~~~~~----~~~~--~~~S~~~kvs~~~~~g~e~~~~~~----------~~~~~~~vg~~~~ld 220 (274)
..-+|+.|...+..+.+.+.. .+.. .++|+.+.+||.+++++++..+.. .....+.++..|.-+
T Consensus 592 ~~~~G~e~~~r~~~~~~e~~~~~~g~g~k~g~r~~~~~~~nD~W~~~~~~~~~~~~tPlrA~~~gv~~~~~~~~~~yr~~ 671 (822)
T PRK14574 592 ILRLGGEWTSRDHWVEGEISNQNYGNGNKVGARLSTWYDLNDHWRVGGQVERLAKDTPLRALKNKVTANSASAYVFWKAD 671 (822)
T ss_pred eeeccceEEecCceEEEEeehhhcCCCCCcCceEEEEecCCCceeeeeeeecCCCCCCHHHHHcCCcceecceEEEEEEc
Confidence 345777888888777775541 1222 667888899999999999998643 144567788888887
Q ss_pred CCCeEEEEec----CC----ceEEEEEEEEee--CCeEEEEEEEEec
Q 023992 221 PLTLVKTRLS----DG----GKFAVQFQREWR--PKSLVTVSAEYDS 257 (274)
Q Consensus 221 ~~~~~Kakv~----s~----g~v~~~~~~~l~--~~~~l~ls~~~d~ 257 (274)
+...+...+. |+ ..+++..++++- |.+++.++..+..
T Consensus 672 e~r~~~~~~~~~~fsDgN~R~~~~~~~~~rl~~~p~~~~d~~~~~~~ 718 (822)
T PRK14574 672 DKRDAELSVTPSRFSDGNNRWEYEFNGRQRIWTGPYLTADFNLGLAA 718 (822)
T ss_pred cceEEEeeeeecccCCCchhhhhhcceeEEeecCCeEEEecceEEee
Confidence 7766666663 22 347788888865 6666666655554
No 43
>PF11751 DUF3308: Protein of unknown function (DUF3308); InterPro: IPR019861 This entry describes a protein family unique to, and greatly expanded in, the Bacteriodetes. Species in this lineage include several, such as Cytophaga hutchinsonii and Cytophaga johnsonae (Flavobacterium johnsoniae), that exhibit a poorly understood rapid gliding phenotype. Several members of this protein family are found in operons with other genes whose loss leads to a loss of the rapid gliding phenotype.
Probab=47.20 E-value=1.9e+02 Score=25.09 Aligned_cols=50 Identities=8% Similarity=0.113 Sum_probs=27.0
Q ss_pred EEEEEEEeeCCCCeEEEEecCCceEEEEEEEEeeCCeEEEEEEEEecCCC
Q 023992 211 FTIGSSHLVDPLTLVKTRLSDGGKFAVQFQREWRPKSLVTVSAEYDSKAI 260 (274)
Q Consensus 211 ~~vg~~~~ld~~~~~Kakv~s~g~v~~~~~~~l~~~~~l~ls~~~d~~~~ 260 (274)
+.+|+.+.+++...+=+-..+..-+.+...-++.+++.+.++-++...++
T Consensus 211 ~~~~~~~~~~~~~~~G~~yr~~~a~~~~~g~~~~~~~~igysYd~~~s~l 260 (274)
T PF11751_consen 211 LDIGAMFRYNDRFWAGLGYRSNDAFSFMLGFNLKNNFRIGYSYDFNLSNL 260 (274)
T ss_pred EEEEEEEEEeeeEEEEEEEeCCCcEEEEEEEEECCCEEEEEEEeeecccc
Confidence 44444444433333333333555566666666666777777776665443
No 44
>PF13609 Porin_4: Gram-negative porin; PDB: 2FGR_A 2FGQ_X 1E54_A 2POR_A 3POR_A 1PRN_A 6PRN_A 8PRN_A 1H6S_1 3PRN_A ....
Probab=46.39 E-value=2e+02 Score=24.97 Aligned_cols=9 Identities=33% Similarity=0.538 Sum_probs=4.1
Q ss_pred eeEEEEeee
Q 023992 157 KYTAGIGLN 165 (274)
Q Consensus 157 ~~~~~~~Y~ 165 (274)
.|.+++.|.
T Consensus 185 ~~~~~~~Y~ 193 (311)
T PF13609_consen 185 VYGAGASYS 193 (311)
T ss_dssp EEEEEEEEE
T ss_pred ceEEEEEEE
Confidence 344444444
No 45
>PF11924 DUF3442: Protein of unknown function (DUF3442); InterPro: IPR024519 This domain is found in uncharacterised proteins, as well as intimin and invasin proteins. Intimin is believed to mediate adherence and it is necessary for the production of attaching and effacing lesions on tissue culture cells []. Invasin is a protein that allows enteric bacteria to penetrate cultured mammalian cells []. The entry of invasin in the cell is mediated by binding several beta-1 chain integrins [].; PDB: 4E1T_A 4E1S_A.
Probab=45.39 E-value=2.2e+02 Score=25.18 Aligned_cols=134 Identities=13% Similarity=0.029 Sum_probs=65.0
Q ss_pred cCCeEEEEEEEEecc-CCcceeeEEEEeeecCCcEEEEEEccCcCeEEE-----EEEEEeCCcceEEEEEEEEecc-Ccc
Q 023992 137 SKELVLGGEVGFDTA-SASFIKYTAGIGLNKPDFSAALLLADKGQALKA-----SYIHAVDPFTSVAAEMTHRFST-YQN 209 (274)
Q Consensus 137 ~~~~~lG~e~~yd~~-~~~~~~~~~~~~Y~~~~~~~~~~~~~~~~~~~~-----S~~~kvs~~~~~g~e~~~~~~~-~~~ 209 (274)
.++|.+|+.+-||.. ++...+.++|+=|-...|.+++..--..+...- .|..++-.-.++.+ .+.+.. +.-
T Consensus 105 ~~~~~~G~N~FyD~~~~~~~~R~~~G~E~~~~~~~l~~N~Y~pls~~~~~~~~~~~~Er~~~G~Di~~--~~~lp~~~~~ 182 (280)
T PF11924_consen 105 NDNWMLGYNAFYDYDFSRNHQRLGLGAEYWSDYLDLRANGYFPLSDWKDSSDSEDYEERPANGYDIEV--GGRLPNYPQL 182 (280)
T ss_dssp ETTEEEEEEEEEEEETTTTEEEEEEEEEEEETTEEEEEEEEEE-S--EE-SSSTT-EEEE--EEEEEE--EEEETTEEEE
T ss_pred CCCeEEEeEEEEecCCCCCcceeeeeeEeEeccceeEeeeEEecCCccccCcccchhhhcccceeEEE--EEecCCCCCc
Confidence 488999999999964 345677888887766666665543100111110 11222222122222 222211 111
Q ss_pred EEEEEE-EEeeCCCCeE--EEEecCCceEEEEEEEEeeCCeEEEEEEEEecCCCCCCCeeEEEEEEc
Q 023992 210 SFTIGS-SHLVDPLTLV--KTRLSDGGKFAVQFQREWRPKSLVTVSAEYDSKAINSAPKMGLAIALK 273 (274)
Q Consensus 210 ~~~vg~-~~~ld~~~~~--Kakv~s~g~v~~~~~~~l~~~~~l~ls~~~d~~~~~~~~k~G~~l~~~ 273 (274)
.+.+.+ +|.-++-..+ ..+-.+...+.+.++.++-|.+++.+.-..+-.. .....+++++.+.
T Consensus 183 ~~~l~~~~y~g~~v~lf~~~~~~~~~~~~~~gl~y~p~p~lt~~~~~~~~~~~-~~~t~~~l~l~y~ 248 (280)
T PF11924_consen 183 GAYLKYEQYYGDNVDLFGSDNRQKNPHGVTLGLEYTPIPLLTLGAGYQDDNGR-GSDTFFGLNLNYP 248 (280)
T ss_dssp EEEEEEEEE-SSSB-TT-TTS-BSS-EEEEEEEEEEEETTEEEEEEEEEEGGG-EEEEEEEEEEEEE
T ss_pred ceEEEEEeecCCcccccCCccCcCCcceEEEEEEEEecCcEEEEEEEEccCCC-ccceEEEEEEEEe
Confidence 222222 4443320000 0112233455666667888899998877666533 2357777777664
No 46
>PRK15318 intimin-like protein SinH; Provisional
Probab=44.21 E-value=3.5e+02 Score=27.32 Aligned_cols=38 Identities=13% Similarity=0.105 Sum_probs=25.9
Q ss_pred cCCeEEEEEEEEecc-CCcceeeEEEEeeecCCcEEEEE
Q 023992 137 SKELVLGGEVGFDTA-SASFIKYTAGIGLNKPDFSAALL 174 (274)
Q Consensus 137 ~~~~~lG~e~~yd~~-~~~~~~~~~~~~Y~~~~~~~~~~ 174 (274)
..+|.+|+.+-||.. ++...+..+|+-|-.+.+.+++.
T Consensus 167 ~~~wMlG~NaFyD~d~s~~h~R~GlGaE~w~dyLkLsAN 205 (730)
T PRK15318 167 FGKWLLGGNIFYDYDFTRGHRRLGLGTEAWTDYLKFSGN 205 (730)
T ss_pred CCCEEEEeEEEEccCCCCCcceeeeeeEEEecceEEEEE
Confidence 567899999999865 34456777777776555444443
No 47
>TIGR03509 OMP_MtrB_PioB decaheme-associated outer membrane protein, MtrB/PioB family. Members of this protein family are integral proteins of the bacterial outer membrane, associated with multiheme c-type cytochromes involved in electron transfer. The MtrB protein of Shewanella oneidensis MR-1 (SO1776) has been shown to form a complex with 1:1:1 stochiometry with the small, periplasmic decaheme cytochrome MtrA and large, surface-exposed decaheme cytochrome MtrC.
Probab=43.93 E-value=3.5e+02 Score=27.09 Aligned_cols=83 Identities=8% Similarity=0.039 Sum_probs=41.1
Q ss_pred EeCCcceEEEEEEEEeccC------------------ccEEEEEEEEeeCCCCeEEEEecCCceEEEEEE-EEeeCC--e
Q 023992 189 AVDPFTSVAAEMTHRFSTY------------------QNSFTIGSSHLVDPLTLVKTRLSDGGKFAVQFQ-REWRPK--S 247 (274)
Q Consensus 189 kvs~~~~~g~e~~~~~~~~------------------~~~~~vg~~~~ld~~~~~Kakv~s~g~v~~~~~-~~l~~~--~ 247 (274)
.+.+++.+++.+.|....- ...+.++++|+++++..+++.+..+-...-=|+ ..+.+. .
T Consensus 545 ~~~~~LsL~~~ysY~~~~~Dt~~g~~~~~~~pdy~~~~~~l~l~a~Y~~~~~l~l~l~~~~eny~d~Dy~~~~~~~~~~~ 624 (649)
T TIGR03509 545 LLDLKLSLGGDYSYSNGDSDYKSTTNTGGPYPDYFSNQHRLKLYGKYQLSKSSSLRLDYRYERYSDNDYAYNNTAYDTIA 624 (649)
T ss_pred ccCCcEEEeeeEEEecCCCcceecccccccCCcccceEEEEEEEEEEecCCCeEEEEEEEEEEEeecchhhcCCCccccc
Confidence 3456677777766653322 234777777777777766555522211111111 112111 1
Q ss_pred EEEEEEEEecCCCCCCCeeEEEEEEc
Q 023992 248 LVTVSAEYDSKAINSAPKMGLAIALK 273 (274)
Q Consensus 248 ~l~ls~~~d~~~~~~~~k~G~~l~~~ 273 (274)
.+..=++++| +- ..|.+|+.+..+
T Consensus 625 ~~~~~g~~~~-~Y-~ah~~~~s~~y~ 648 (649)
T TIGR03509 625 TVTTLGDQNP-NY-NAHYLGVSYSYL 648 (649)
T ss_pred ccccccccCC-Cc-eeeEEEEEEEEe
Confidence 1121133443 11 369999988875
No 48
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=43.19 E-value=3.8e+02 Score=27.31 Aligned_cols=103 Identities=9% Similarity=-0.012 Sum_probs=72.3
Q ss_pred ceeeEEEEeeecCCcEEEEEEcc----Cc--CeEEEEEEEEeCCcceEEEEEEEEec----------cCccEEEEEEEEe
Q 023992 155 FIKYTAGIGLNKPDFSAALLLAD----KG--QALKASYIHAVDPFTSVAAEMTHRFS----------TYQNSFTIGSSHL 218 (274)
Q Consensus 155 ~~~~~~~~~Y~~~~~~~~~~~~~----~~--~~~~~S~~~kvs~~~~~g~e~~~~~~----------~~~~~~~vg~~~~ 218 (274)
...+-+|+-|...+..+.+.+.. .+ ...+++..+.+|+.+++++++..+.. .....+.++..|.
T Consensus 533 ~~~~g~G~e~~~~~~~~e~~~~~~~~~~~~~~g~~~~~~~~~nd~w~~~~~~~~~~~~~plra~~~~~~~~~~~~~~~~~ 612 (765)
T PRK10049 533 VRDWLAGVEWRSRDIWLEAELSERVFGHEHKPGARLSGWYDFNDNWRIGGSLERLSHRTPLRALKNGVTANGGQGYVRWY 612 (765)
T ss_pred EEEEeeeeEEEecceeEEEEeeccccCCCCCcccEEEeeeccCCCeeeeceeecCCCCCCHHHHHcCCccccceEEEEEe
Confidence 34567888898888888776621 12 22668999999999999999998643 1345677788888
Q ss_pred eCCCCeEEEEec----CC----ceEEEEEEEEee--CCeEEEEEEEEec
Q 023992 219 VDPLTLVKTRLS----DG----GKFAVQFQREWR--PKSLVTVSAEYDS 257 (274)
Q Consensus 219 ld~~~~~Kakv~----s~----g~v~~~~~~~l~--~~~~l~ls~~~d~ 257 (274)
-++...+...+. |+ ..+++..++++- |.+++.++..+..
T Consensus 613 ~~e~~~~~~~~~~~~fsD~N~r~~~~~~~~~~~~~~p~~~~~~~~~~~~ 661 (765)
T PRK10049 613 QNERREYGVSWAFSDFSDGNRRQEYSLSGQERLWSSPYLIVDFLPSLYY 661 (765)
T ss_pred EcceEEEEeeeeeecccCCchhhheeceeeEEeecCCeEEEeeceEEee
Confidence 877666666553 12 457788888866 6677766666655
No 49
>PF13505 OMP_b-brl: Outer membrane protein beta-barrel domain; PDB: 3DZM_A 2LHF_A 1Q9F_A 1ORM_A 1Q9G_A 1QJ9_A 1QJ8_A 3QRA_A 3QRC_B.
Probab=42.59 E-value=1.5e+02 Score=22.58 Aligned_cols=25 Identities=4% Similarity=-0.061 Sum_probs=18.4
Q ss_pred ceEEEEEEEEeeCCeEEEEEEEEec
Q 023992 233 GKFAVQFQREWRPKSLVTVSAEYDS 257 (274)
Q Consensus 233 g~v~~~~~~~l~~~~~l~ls~~~d~ 257 (274)
..+++.++.++++++.+.+..+...
T Consensus 131 ~~~g~G~~y~~~~~~~l~~~y~~~~ 155 (176)
T PF13505_consen 131 FGLGAGVEYNISDNFSLNAEYRYTF 155 (176)
T ss_dssp EEEEEEEEEESSTTEEEEEEEEEEE
T ss_pred EEEEEEEEEEECCCEEEEEEEEEEE
Confidence 5567788888888888877666643
No 50
>PF13557 Phenol_MetA_deg: Putative MetA-pathway of phenol degradation
Probab=41.16 E-value=2.2e+02 Score=23.93 Aligned_cols=48 Identities=15% Similarity=0.070 Sum_probs=32.0
Q ss_pred EEEEEEEeCCcceEEEEEEEEe---------------ccCccEEEEEEEEeeCCCCeEEEEec
Q 023992 183 KASYIHAVDPFTSVAAEMTHRF---------------STYQNSFTIGSSHLVDPLTLVKTRLS 230 (274)
Q Consensus 183 ~~S~~~kvs~~~~~g~e~~~~~---------------~~~~~~~~vg~~~~ld~~~~~Kakv~ 230 (274)
...+-+++++++.+++|..+.. +.....+..|..|.+.++..+.+.+.
T Consensus 168 ~~~~~y~~~~~~~~~~~~~~~~~~~~~d~~~g~~~~~~~~~~~~~~gv~y~~~~~~~l~~~~~ 230 (248)
T PF13557_consen 168 NFALSYALTPKLSLGLEGYGYYDQLTDDKGNGVDNGSRQNSFYLGPGVSYQLSPNLSLDAGVG 230 (248)
T ss_pred EEEEEEEcCcceEEeEEeEEEEeeccccccCCccCCCccceEEEEEEEEEEEcCCeEEEEEEE
Confidence 3455667788888888887432 22455678888888877766665554
No 51
>PF05420 BCSC_C: Cellulose synthase operon protein C C-terminus (BCSC_C); InterPro: IPR008410 This entry contains the C-terminal regions of several bacterial cellulose synthase operon C (BCSC) proteins. BCSC is involved in cellulose synthesis although the exact function of this protein is unknown [].; GO: 0030244 cellulose biosynthetic process, 0019867 outer membrane
Probab=40.42 E-value=79 Score=28.99 Aligned_cols=42 Identities=14% Similarity=0.063 Sum_probs=33.5
Q ss_pred CeEEEEEEEEeCCcceEEEEEEEEecc--CccEEEEEEEEeeCC
Q 023992 180 QALKASYIHAVDPFTSVAAEMTHRFST--YQNSFTIGSSHLVDP 221 (274)
Q Consensus 180 ~~~~~S~~~kvs~~~~~g~e~~~~~~~--~~~~~~vg~~~~ld~ 221 (274)
-.+.+..-+|+++++.+|+++.++... .+..+.+-.+|.+++
T Consensus 298 y~l~a~~eyrls~~~~lGg~~~~~~s~dY~~~~~~lylRY~f~~ 341 (342)
T PF05420_consen 298 YSLRAAVEYRLSPHWFLGGGLDIDNSGDYNPSHAMLYLRYSFDP 341 (342)
T ss_pred EEEEEEEEEEecCCEEEEEEEehhhcCCCCcceEEEEEEEeccC
Confidence 346778888999999999999988654 577888888888865
No 52
>PRK10716 long-chain fatty acid outer membrane transporter; Provisional
Probab=37.77 E-value=3.6e+02 Score=25.47 Aligned_cols=48 Identities=13% Similarity=0.175 Sum_probs=25.1
Q ss_pred EEEEEEEEeeCCCCeEEEEecCC--------------ceEEEEEEEEeeCCeEEEEEEEEec
Q 023992 210 SFTIGSSHLVDPLTLVKTRLSDG--------------GKFAVQFQREWRPKSLVTVSAEYDS 257 (274)
Q Consensus 210 ~~~vg~~~~ld~~~~~Kakv~s~--------------g~v~~~~~~~l~~~~~l~ls~~~d~ 257 (274)
++++|.+|+++++.++-+-+.-. +.-.....+.|++.+.+.++++...
T Consensus 288 ~~~lg~~~~~~~~~~l~~d~~wt~WS~~~~l~i~~~~g~~~~~~~~~w~D~w~~~~G~~Y~~ 349 (435)
T PRK10716 288 MWEVSGYNRVAPQWAIHYSLAYTSWSQFQELKATSSNGDTLFQKHEGFKDAYRIALGTTYYY 349 (435)
T ss_pred EEEEEeEEecCCcEEEEEEEEEeeecccceEEEEeCCCcceecccccceeeeEEEeeEEEEC
Confidence 45667777776666665544321 1111223345556666666666654
No 53
>PRK14574 hmsH outer membrane protein; Provisional
Probab=36.43 E-value=5.1e+02 Score=26.88 Aligned_cols=40 Identities=10% Similarity=0.168 Sum_probs=27.9
Q ss_pred CCceEEEEEEEEee--CCeEEEEEEEEecCCCCCCCeeEEEE
Q 023992 231 DGGKFAVQFQREWR--PKSLVTVSAEYDSKAINSAPKMGLAI 270 (274)
Q Consensus 231 s~g~v~~~~~~~l~--~~~~l~ls~~~d~~~~~~~~k~G~~l 270 (274)
+...+++.|+|+|+ +.+.++.+...+-.--++..-.+..+
T Consensus 773 ~~~~~~~~Y~h~w~~~~~~~~~ygi~~~~~~YDG~~E~~~~~ 814 (822)
T PRK14574 773 NGLVTTAGYGQRVQWNDVIDTGVAVVYDKRPYDGKREHDVTL 814 (822)
T ss_pred CCCcceeeeeeEEEECCceeEEEEEEecCCCCCCCcccCceE
Confidence 45678899999887 66888888888764446644444333
No 54
>PF04453 OstA_C: Organic solvent tolerance protein; InterPro: IPR007543 This family is involved in organic solvent tolerance in bacteria. The region contains several highly conserved, potentially catalytic, residues. ostA is one of a number of genes that confer organic solvent tolerance in Escherichia coli [, ]. This protein has significant medical importance since endoscopes are disinfected by pre-cleaning and soaking them in glutaraldehyde. Tolerant bacteria may, therefore, survive this disinfecting procedure [].; GO: 0010033 response to organic substance, 0016044 cellular membrane organization, 0019867 outer membrane
Probab=34.45 E-value=3.6e+02 Score=24.50 Aligned_cols=32 Identities=9% Similarity=0.222 Sum_probs=27.6
Q ss_pred ccCCeEEEEEEEEeccCCcceeeEEEEeeecC
Q 023992 136 GSKELVLGGEVGFDTASASFIKYTAGIGLNKP 167 (274)
Q Consensus 136 ~~~~~~lG~e~~yd~~~~~~~~~~~~~~Y~~~ 167 (274)
..++|.+.+.+.||.....+.+.++.+.|..+
T Consensus 316 ~~~~l~l~~~~~yd~~~~~~~~~~~~~~~~~~ 347 (388)
T PF04453_consen 316 PNDNLSLSSDTQYDPYDNRISRSNVSLSYRPD 347 (388)
T ss_pred ecCCEEEEEEEEECCCCCceEEEEEEEEEEcC
Confidence 36789999999999999999989999888776
No 55
>PF12519 DUF3722: Protein of unknown function (DUF3722) ; InterPro: IPR022197 This family of proteins is found in eukaryotes. Proteins in this family are typically between 415 and 473 amino acids in length.
Probab=34.03 E-value=3.3e+02 Score=23.97 Aligned_cols=63 Identities=16% Similarity=0.137 Sum_probs=51.1
Q ss_pred cceEEEEEEEEeccCccEEEEEEEEeeCCC-----CeEEEEecCC-ceEEEEEEEEeeCCeEEEEEEEEec
Q 023992 193 FTSVAAEMTHRFSTYQNSFTIGSSHLVDPL-----TLVKTRLSDG-GKFAVQFQREWRPKSLVTVSAEYDS 257 (274)
Q Consensus 193 ~~~~g~e~~~~~~~~~~~~~vg~~~~ld~~-----~~~Kakv~s~-g~v~~~~~~~l~~~~~l~ls~~~d~ 257 (274)
.+.+|+|+=+....+...+..|.||.--+. .++-+.+|-- |.|+..|--+-++..+| +..+|+
T Consensus 191 r~S~GaE~yys~~~ks~G~STglRf~Tlp~~tg~PlTlTlt~NPl~GhiSstYs~k~s~~~a~--~SrfdF 259 (260)
T PF12519_consen 191 RFSAGAELYYSALNKSPGCSTGLRFCTLPAHTGKPLTLTLTLNPLMGHISSTYSVKASPNSAF--CSRFDF 259 (260)
T ss_pred eEeeccEEEEEeeccCCcccceeEEEecCCCCCCCeEEEEEeccccccchheeeeeccCCceE--Eeeccc
Confidence 689999999999999999999999985332 6899999997 99999998887666554 555553
No 56
>PRK09980 ompL outer membrane porin L; Provisional
Probab=26.83 E-value=4.1e+02 Score=22.85 Aligned_cols=28 Identities=7% Similarity=-0.044 Sum_probs=19.4
Q ss_pred CceEEEEEEE-EeeCCeEEEEEEEEecCC
Q 023992 232 GGKFAVQFQR-EWRPKSLVTVSAEYDSKA 259 (274)
Q Consensus 232 ~g~v~~~~~~-~l~~~~~l~ls~~~d~~~ 259 (274)
-..+.+.|.. +++++++++-+..+|...
T Consensus 71 ~~E~~~sY~~~k~~d~~tl~PG~~~~s~s 99 (230)
T PRK09980 71 YNEIEGWYPLFKPTDKLTIQPGGLINDKS 99 (230)
T ss_pred ceEEEEEEEeEecCCCEEEecceEEEecC
Confidence 3455667764 888888888888777743
No 57
>COG4206 BtuB Outer membrane cobalamin receptor protein [Coenzyme metabolism]
Probab=25.86 E-value=1.4e+02 Score=29.15 Aligned_cols=44 Identities=9% Similarity=-0.007 Sum_probs=30.1
Q ss_pred CeEEEEEEEEeCCcceEEEEEEEEeccCccEEEEEEEEeeCCCCeEEEEecCC
Q 023992 180 QALKASYIHAVDPFTSVAAEMTHRFSTYQNSFTIGSSHLVDPLTLVKTRLSDG 232 (274)
Q Consensus 180 ~~~~~S~~~kvs~~~~~g~e~~~~~~~~~~~~~vg~~~~ld~~~~~Kakv~s~ 232 (274)
..+...|+..-...+.+|.-..++ +.++|.+++.+++++||.+-
T Consensus 539 ~Ryd~~~~t~p~ntv~lggysl~D---------l~~~Y~it~~~~v~grIeNl 582 (608)
T COG4206 539 TRYDGDYSTYPANTVKLGGYSLLD---------LRVSYPITDHLTVSGRIENL 582 (608)
T ss_pred EeccCccccCcccceEeccEEEEE---------EEEEEEecCceEEeEehhhh
Confidence 344455555544446666655554 45789999999999999884
No 58
>PF09381 Porin_OmpG: Outer membrane protein G (OmpG); InterPro: IPR018981 Porins are channel proteins in the outer membrane of Gram-negative bacteria which mediate the uptake of molecules required for growth and survival. Escherichia coli OmpG forms a 14 stranded beta-barrel and in contrast to most porins, appears to function as a monomer []. The central pore of OmpG is wider than other E. coli porins and it is speculated that it may form a non-specific channel for the transport of larger oligosaccharides []. ; PDB: 2IWV_C 2F1C_X 2JQY_A 2IWW_B 2WVP_A 2X9K_A.
Probab=25.32 E-value=1.9e+02 Score=25.58 Aligned_cols=66 Identities=9% Similarity=0.072 Sum_probs=41.3
Q ss_pred CccEEEEEEEEeeCC------CCeEEEEecCCceEEEEEEEEeeCCeEEEEEEEEecCCC-CC----CCeeEEEEEE
Q 023992 207 YQNSFTIGSSHLVDP------LTLVKTRLSDGGKFAVQFQREWRPKSLVTVSAEYDSKAI-NS----APKMGLAIAL 272 (274)
Q Consensus 207 ~~~~~~vg~~~~ld~------~~~~Kakv~s~g~v~~~~~~~l~~~~~l~ls~~~d~~~~-~~----~~k~G~~l~~ 272 (274)
+..+++==+++-||. +--..--..+.-+++++|+|.+.|++++++--..+..+= ++ -|.-|+|++.
T Consensus 223 g~~tiTPY~R~~LD~w~n~dw~~~~~re~~~~~RlGll~~~~~~~glsmtLEYAYE~q~hd~g~~~kfHy~GvGv~Y 299 (301)
T PF09381_consen 223 GNTTITPYTRIGLDRWSNWDWQDDLEREGHDFTRLGLLYEYDFPNGLSMTLEYAYEWQDHDEGDSDKFHYTGVGVNY 299 (301)
T ss_dssp TTEEEEEEEEEEEEEEESTTTTTSSS-EEEEEEEEEEEEEEESSSSEEEEEEEEEEEEEESSSSSEEEEEEEEEEEE
T ss_pred CCceeccceEeeeecccccccccchhhcCCccceeEEEEecccCCCcEEEEeeeeehhhccCCcccceeeeccceee
Confidence 345666666666643 111222233347899999999999988888766655331 12 2777888864
No 59
>PF06178 KdgM: Oligogalacturonate-specific porin protein (KdgM); InterPro: IPR009331 This family consists of several bacterial proteins which are homologous to the oligogalacturonate-specific porin protein KdgM (Q934G3 from SWISSPROT) from Erwinia chrysanthemi. The phytopathogenic Gram-negative bacteria E. chrysanthemi secretes pectinases, which are able to degrade the pectic polymers of plant cell walls, and uses the degradation products as a carbon source for growth. KdgM is a major outer membrane protein, whose synthesis is strongly induced in the presence of pectic derivatives. KdgM behaves like a voltage-dependent porin that is slightly selective for anions and that exhibits fast block in the presence of trigalacturonate. In contrast to most porins, KdgM seems to be monomeric [].; PDB: 2WJQ_A 2WJR_A.
Probab=23.89 E-value=4.5e+02 Score=22.30 Aligned_cols=18 Identities=22% Similarity=0.427 Sum_probs=10.8
Q ss_pred eEEEEecCCCCcEEEEEE
Q 023992 28 KFTLSVPSSTGLGLSATG 45 (274)
Q Consensus 28 ~l~~~~~~~~g~~f~~~~ 45 (274)
+|.++....+|..|.+..
T Consensus 26 Ri~~sh~f~nG~g~~~E~ 43 (218)
T PF06178_consen 26 RIKVSHRFDNGFGFSVEA 43 (218)
T ss_dssp EEEEEEE-TTSEEEEEEE
T ss_pred EEEEEEEccCCcEEEEEE
Confidence 666666666666666544
No 60
>TIGR01414 autotrans_barl outer membrane autotransporter barrel domain. A number of Gram-negative bacterial proteins, mostly found in pathogens and associated with virulence, contain a conserved C-terminal domain that integrates into the outer membrane and enables the N-terminal region to be delivered across the membrane. This C-terminal autotransporter domain is about 400 amino acids in length and includes the aromatic amino acid-rich OMP signal, typically ending with a Phe or Trp residue, at the extreme C-terminus.
Probab=23.32 E-value=5.9e+02 Score=23.46 Aligned_cols=64 Identities=14% Similarity=0.195 Sum_probs=42.9
Q ss_pred ceEEEEEEEEecc-----CccEEEEEEEEeeCCCCeEE-------EEecCC-ceEEEEEEEEeeCCeEEEEEEEEec
Q 023992 194 TSVAAEMTHRFST-----YQNSFTIGSSHLVDPLTLVK-------TRLSDG-GKFAVQFQREWRPKSLVTVSAEYDS 257 (274)
Q Consensus 194 ~~~g~e~~~~~~~-----~~~~~~vg~~~~ld~~~~~K-------akv~s~-g~v~~~~~~~l~~~~~l~ls~~~d~ 257 (274)
..+|+++.+.... -.+-+.++++|.+.+...++ ..++.+ +.+++.+..++.+++++.+..+...
T Consensus 335 ~~lG~r~~~~~~~~~~~~~~p~~~~~~~~~f~~~~~~~~~g~~~~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~~~ 411 (429)
T TIGR01414 335 GRLGLRVGYQFDLGTGRAVKPYLKANVLHEFKGGTGVRVNGVTIRTDFSGTRGEYGVGVNAKIKSNLSLYADVDYQK 411 (429)
T ss_pred EEEEEEEEeEeccCCCcEEeEEEEEEEEEecCCCCeEEECCEEeeccCCCcEEEEeeEEEEEECCCEEEEEEEEEec
Confidence 6778888776432 24667888888885433332 223333 5788888889999888777777665
No 61
>PRK10159 outer membrane phosphoporin protein E; Provisional
Probab=21.42 E-value=6.2e+02 Score=22.98 Aligned_cols=65 Identities=9% Similarity=0.001 Sum_probs=42.4
Q ss_pred cEEEEEEEEeeCCCCeEEEE--------e---cC---CceEEEEEEEEeeCCeEEEEEEEEecCCC------CCCCeeEE
Q 023992 209 NSFTIGSSHLVDPLTLVKTR--------L---SD---GGKFAVQFQREWRPKSLVTVSAEYDSKAI------NSAPKMGL 268 (274)
Q Consensus 209 ~~~~vg~~~~ld~~~~~Kak--------v---~s---~g~v~~~~~~~l~~~~~l~ls~~~d~~~~------~~~~k~G~ 268 (274)
..+.+|++|++.+...+.+- + +. .-.+.+.+++.|+++..+-+....+..+. +..-.+|+
T Consensus 266 ~~~~~ga~y~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~lg~~Y~LSKrT~~Ya~y~~~~~~~~~~~~~~~dd~~~~ 345 (351)
T PRK10159 266 QNFEAVAQYQFDFGLRPSLGYVLSKGKDIEGIGDEDLVNYIDVGATYYFNKNMSAFVDYKINQLDSDNKLNINNDDIVAV 345 (351)
T ss_pred EEEEEEEEEeecCCcceEeeEEEEcccccccCCCcceeEEEEEeeEEEEcCCeeEEEEEeecccccccccCCCcCCeEEE
Confidence 45788888888664444322 1 11 12778899999999988777777765321 12346888
Q ss_pred EEEEc
Q 023992 269 AIALK 273 (274)
Q Consensus 269 ~l~~~ 273 (274)
||..+
T Consensus 346 g~ry~ 350 (351)
T PRK10159 346 GMTYQ 350 (351)
T ss_pred EeEEE
Confidence 88764
No 62
>cd01347 ligand_gated_channel TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) anti-parallel beta-barrel. Ligands apparently bind to the large extracellular loops. The N-terminal 150-200 residues form a plug from the periplasmic end of barrel. Energy (proton-motive force) and TonB-dependent conformational alteration of channel (parts of plug, and loops 7 and 8) allow passage of ligand. FepA residues 12-18 form the TonB box, which mediates the interaction with the TonB-containing inner membrane complex. TonB preferentially interacts with ligand-bound receptors. Transport thru the channel may resemble passage thru an air lock. In this model, ligand binding leads to closure of the extracellular end of pore, then a TonB-mediated signal facillitates opening of the interior side of pore, deforming the N-terminal plug and allowing passage of the ligand to the periplasm. Such a mechanism would prevent the free diffusion of small molecules thru the pore.
Probab=21.41 E-value=6.9e+02 Score=23.60 Aligned_cols=59 Identities=19% Similarity=0.184 Sum_probs=36.5
Q ss_pred ceEEEEEEEEeccC--ccEEEEEEEEeeCCCCeEEEEecCCceEEEEEEEEeeCCeEEEEEEEEecC
Q 023992 194 TSVAAEMTHRFSTY--QNSFTIGSSHLVDPLTLVKTRLSDGGKFAVQFQREWRPKSLVTVSAEYDSK 258 (274)
Q Consensus 194 ~~~g~e~~~~~~~~--~~~~~vg~~~~ld~~~~~Kakv~s~g~v~~~~~~~l~~~~~l~ls~~~d~~ 258 (274)
..+.+++.+..... ...+.+|++|.-+... .....+-+-++.++.+.+++.+++..|.-
T Consensus 300 ~~~~~~~~~~~~~~~~~~~l~~G~~~~~~~~~------~~~~~~y~~~~~~~~~~~~l~~G~R~~~~ 360 (635)
T cd01347 300 LGFDAGLNAPFGTGPVAHTLTLGVEYRREELD------EKQTALYAQDTIELTDDLTLTLGLRYDHY 360 (635)
T ss_pred eeeecceeEEcccCCccEEEEEeeEEeccccc------cceeeeEEEEEEeccCceEEEEEEEEEEE
Confidence 44444445544332 5788999998874432 33333445556666678888888887763
No 63
>PRK10177 putative invasin; Provisional
Probab=20.98 E-value=7.4e+02 Score=23.72 Aligned_cols=32 Identities=13% Similarity=0.084 Sum_probs=21.3
Q ss_pred cCCeEEEEEEEEecc-CCcceeeEEEEeeecCC
Q 023992 137 SKELVLGGEVGFDTA-SASFIKYTAGIGLNKPD 168 (274)
Q Consensus 137 ~~~~~lG~e~~yd~~-~~~~~~~~~~~~Y~~~~ 168 (274)
.++|.+|+.+-||.. ++...+..+|+-|-.+.
T Consensus 169 ~~~wmlG~N~F~D~dls~~h~R~glGaEaw~dy 201 (465)
T PRK10177 169 AGNWLLGYNTFYDNLLDENLQRAGFGAEAWGEY 201 (465)
T ss_pred cCCeEEEeEEEEccCCCCCcceeeccceeeehh
Confidence 688999999999864 23335666666554433
No 64
>PF02530 Porin_2: Porin subfamily; InterPro: IPR003684 This family consists of porins from the alpha subdivision of Proteobacteria the members of this family are related to Gram-negative porins []. The porins form large aqueous channels in the cell membrane allowing the selective entry of hydrophilic compounds this so called 'molecular sieve' is found in the cell walls of Gram-negative bacteria.; GO: 0015288 porin activity, 0006810 transport, 0016020 membrane
Probab=20.26 E-value=3.9e+02 Score=24.66 Aligned_cols=87 Identities=13% Similarity=-0.081 Sum_probs=0.0
Q ss_pred CCeEEEEEEEEeccCCcceeeEEEEeeecCCcEEEEEEccCcCeEEEEEEEEeCCcceEEEEEEEEeccCccE---EEEE
Q 023992 138 KELVLGGEVGFDTASASFIKYTAGIGLNKPDFSAALLLADKGQALKASYIHAVDPFTSVAAEMTHRFSTYQNS---FTIG 214 (274)
Q Consensus 138 ~~~~lG~e~~yd~~~~~~~~~~~~~~Y~~~~~~~~~~~~~~~~~~~~S~~~kvs~~~~~g~e~~~~~~~~~~~---~~vg 214 (274)
+.|..-++..|....+. .++.+++| .-.-.....-+.+.-.+.+...-..-+.+++++|+.|.....+.. ..-+
T Consensus 289 ~~w~~~~~~~~~~t~~~--~~~~~~s~-~~~~~~~~~~~~~~~~v~anl~w~pv~~l~ig~E~~Y~~~d~~~~~~~~~~~ 365 (379)
T PF02530_consen 289 PQWRSYGGYQYNFTDKV--TITLGASY-AVGDSANGNDDFNIWQVGANLFWSPVKNLDIGAEYQYTDRDQKNSDGDAKPG 365 (379)
T ss_pred cceeeeEEEEEcccCce--eEechhhc-cccccccccCCCcEEEEEEEEEEEECCCcEEEEEEEEEecCCccccccCCCc
Q ss_pred EEEeeCCCCeEEE
Q 023992 215 SSHLVDPLTLVKT 227 (274)
Q Consensus 215 ~~~~ld~~~~~Ka 227 (274)
+.|+++++-.+-+
T Consensus 366 ~~~~~~~~~~~~~ 378 (379)
T PF02530_consen 366 AVYELKDQDSWSG 378 (379)
T ss_pred ceeecCCCccccc
Done!