Query 023992
Match_columns 274
No_of_seqs 119 out of 582
Neff 8.3
Searched_HMMs 29240
Date Mon Mar 25 16:19:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023992.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023992hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3emn_X Voltage-dependent anion 100.0 3.7E-68 1.2E-72 470.2 39.3 270 4-274 15-295 (295)
2 3emn_X Voltage-dependent anion 98.6 7.6E-05 2.6E-09 65.5 27.2 183 28-216 96-292 (295)
3 3bs0_A TODX; beta barrel, oute 91.6 7.7 0.00026 35.1 17.7 50 180-229 279-354 (439)
4 3bry_A TBUX; beta barrel, oute 90.9 8.9 0.00031 34.6 16.9 25 180-204 279-303 (441)
5 3nsg_A Outer membrane protein 89.0 11 0.00038 32.9 19.3 134 138-272 147-339 (341)
6 3pgu_A Long-chain fatty acid t 86.5 9.6 0.00033 34.5 12.5 75 180-258 273-350 (427)
7 3dwo_X Probable outer membrane 85.9 20 0.00069 32.6 19.0 49 180-228 286-356 (451)
8 3prn_A Porin; integral membran 82.6 22 0.00077 30.4 18.5 114 157-272 163-289 (289)
9 2por_A Porin; HET: C8E; 1.80A 81.8 24 0.0008 30.2 17.1 63 209-272 230-299 (301)
10 1pho_A Phosphoporin; outer mem 63.9 68 0.0023 27.3 19.4 116 156-272 166-328 (330)
11 3vy8_X Outer membrane protein; 62.4 80 0.0028 27.6 14.2 96 156-253 184-330 (355)
12 2fgq_X OMP32, outer membrane p 58.8 87 0.003 26.8 16.4 119 138-257 146-296 (332)
13 1uyn_X NALP; autotransporter, 57.2 47 0.0016 28.3 8.6 64 194-257 210-291 (308)
14 2por_A Porin; HET: C8E; 1.80A 52.6 1.1E+02 0.0036 25.9 13.9 21 209-229 261-281 (301)
15 2zfg_A Outer membrane protein 52.5 1.1E+02 0.0038 26.2 19.7 134 138-272 149-338 (340)
16 3vy8_X Outer membrane protein; 51.9 1.2E+02 0.0042 26.4 18.7 41 80-120 147-202 (355)
17 1pho_A Phosphoporin; outer mem 49.2 1.2E+02 0.0041 25.6 14.1 73 155-227 207-301 (330)
18 3qra_A AIL, attachment invasio 47.1 91 0.0031 23.6 11.8 24 233-256 116-139 (157)
19 3kvn_X Esterase ESTA; beta bar 46.0 1.9E+02 0.0066 27.1 17.1 64 194-257 534-615 (632)
20 2wjr_A Probable N-acetylneuram 42.9 54 0.0018 26.7 6.2 23 179-201 53-75 (214)
21 3nsg_A Outer membrane protein 40.9 1.7E+02 0.0059 25.1 20.8 17 105-121 174-190 (341)
22 2fgq_X OMP32, outer membrane p 38.4 1.9E+02 0.0063 24.7 19.1 19 209-227 272-290 (332)
23 2lme_A Adhesin YADA; trimeric 38.3 1E+02 0.0036 21.8 6.6 35 194-230 54-88 (105)
24 3prn_A Porin; integral membran 36.7 2E+02 0.0067 24.5 18.9 128 104-232 131-274 (289)
25 3pgu_A Long-chain fatty acid t 35.5 2.4E+02 0.0082 25.1 18.9 59 181-249 326-397 (427)
26 2j1n_A Outer membrane protein 32.3 2.4E+02 0.0081 24.1 19.6 116 156-272 178-344 (346)
27 2wjr_A Probable N-acetylneuram 31.2 2.1E+02 0.0071 23.1 9.0 19 184-202 19-37 (214)
28 3bry_A TBUX; beta barrel, oute 28.1 3.1E+02 0.011 24.1 18.3 28 231-258 334-361 (441)
29 2jmf_B Neurogenic locus notch 23.5 12 0.00042 19.0 -0.5 14 2-15 10-23 (26)
30 3bs0_A TODX; beta barrel, oute 23.3 3.8E+02 0.013 23.6 17.7 28 231-258 332-359 (439)
31 3aeh_A Hemoglobin-binding prot 22.6 2.6E+02 0.0088 23.4 7.5 20 210-229 265-284 (308)
No 1
>3emn_X Voltage-dependent anion-selective channel protein; VDAC1, eukaryotic membrane protein, beta barrel, AP ION transport, mitochondrion, outer membrane; HET: MC3; 2.30A {Mus musculus} PDB: 2k4t_A 2jk4_A
Probab=100.00 E-value=3.7e-68 Score=470.16 Aligned_cols=270 Identities=21% Similarity=0.399 Sum_probs=259.8
Q ss_pred CCCCCCCccccccccccCCCCCC-ceEEEEecCCCCcEEEEEEEeeC--ceEEEEEEEEEEeCC--eEEEEEEeCCCceE
Q 023992 4 NPAPFSDVGKRAKDLLNKDYDFG-HKFTLSVPSSTGLGLSATGLKKD--EIFIGDINSVYKSGN--TTVDVKVDTYSSVS 78 (274)
Q Consensus 4 ~p~~f~dl~K~akdll~k~y~~~-~~l~~~~~~~~g~~f~~~~~~~~--~~~~g~~~~~~~~~~--~~~~~~~~t~~~l~ 78 (274)
+||+|.||||.|||||+|||+++ |+|+||+++++||+|++++..++ +++.|++|++|++++ ++++++|+|+|.|.
T Consensus 15 ~pp~y~DigK~AkDll~kdy~~~~~kl~~kt~s~~gv~ft~~g~~~~~~~~v~g~le~kyk~~~~g~t~~~kw~t~n~l~ 94 (295)
T 3emn_X 15 VPPTYADLGKSARDVFTKGYGFGLIKLDLKTKSENGLEFTSSGSANTETTKVNGSLETKYRWTEYGLTFTEKWNTDNTLG 94 (295)
T ss_dssp SCCCGGGTTHHHHHHHHTTCCTTEEEEEEECCCSSEEEEEEEEEEETTTCCEEEEEEEEEEETTTTEEEEEEEETTSCEE
T ss_pred CCCcccccccchHHhccCCcCCCCEEEEEEEEcCCCEEEEEEEEecCCCCceeeEEEEEEEecCCcEEEEEEEeCCCcEE
Confidence 79999999999999999999999 99999999999999999999877 899999999999985 89999999999999
Q ss_pred EEEEEcc-cCCCeEEEEEEEe-cC--CCceEEEEEEcCCceEEEEEeeCC-CCCeeeEEEEEccCCeEEEEEEEEeccCC
Q 023992 79 TKVTMVD-ILPSTKAALSFRI-PD--HKSGKLDLQYLHPHAAIDSSIGLN-PTPLLELSATIGSKELVLGGEVGFDTASA 153 (274)
Q Consensus 79 ~~i~~~~-~~~glk~~~~~~~-p~--~~~~~~~~~y~~~~~~~~~~~~l~-~~p~~~~s~~~~~~~~~lG~e~~yd~~~~ 153 (274)
++|++++ ++||+|+++++++ |+ .++++++++|++++++++++++++ .+|.++.++++++++|++|+|+.||.+.+
T Consensus 95 t~i~~~~~l~~Glk~~~~~~~~P~~~~ks~kl~~~Y~~~~~~~~~~v~l~~~~P~i~~s~v~g~~~~~~G~e~~yd~~~~ 174 (295)
T 3emn_X 95 TEITVEDQLARGLKLTFDSSFSPNTGKKNAKIKTGYKREHINLGCDVDFDIAGPSIRGALVLGYEGWLAGYQMNFETSKS 174 (295)
T ss_dssp EEEEEESSSSTTEEEEEEEEEETTTTEEEEEEEEEEEETTEEEEEEEEECTTCCEEEEEEEEEETTEEEEEEEEEETTTT
T ss_pred EEEEEccccCCceEEEEEEEECCCCCCcceEEEEEEEcCCEeEEEEEEeccCCCEEEEEEEEeeCCEEEEEEEEEEeCCC
Confidence 9999999 9999999999996 76 478999999999999999999984 79999999999999999999999999999
Q ss_pred cceeeEEEEeeecCCcEEEEEEccCcCeEEEEEEEEeCCcceEEEEEEEEeccCccEEEEEEEEeeCCCCeEEEEecCCc
Q 023992 154 SFIKYTAGIGLNKPDFSAALLLADKGQALKASYIHAVDPFTSVAAEMTHRFSTYQNSFTIGSSHLVDPLTLVKTRLSDGG 233 (274)
Q Consensus 154 ~~~~~~~~~~Y~~~~~~~~~~~~~~~~~~~~S~~~kvs~~~~~g~e~~~~~~~~~~~~~vg~~~~ld~~~~~Kakv~s~g 233 (274)
.+++|+++++|+.++|++++++++ ++.+++|||||+++++++|+|+.|....++++++||+||++|+++++|||||++|
T Consensus 175 ~~t~~n~~~gY~~~d~~~s~~l~~-~~~~~aSy~qkvs~~~~~g~e~~~~~~~~~~~~tvG~ky~ld~~~~vKakvn~~g 253 (295)
T 3emn_X 175 RVTQSNFAVGYKTDEFQLHTNVND-GTEFGGSIYQKVNKKLETAVNLAWTAGNSNTRFGIAAKYQVDPDACFSAKVNNSS 253 (295)
T ss_dssp EEEEEEEEEEEECSSEEEEEEEET-TTEEEEEEEEECSSSEEEEEEEEEETTEEEEEEEEEEEECCSSSEEEEEEEETTS
T ss_pred CeeeEEEEEEEcCCCEEEEEEECC-CCeEEEEEEEECCCceEEEEEEEEeccCCCcEEEEEEEEEcCCCCEEEEEECCCC
Confidence 999999999999999999999987 7999999999999999999999999988999999999999999999999999999
Q ss_pred eEEEEEEEEeeCCeEEEEEEEEecCCCC-CCCeeEEEEEEcC
Q 023992 234 KFAVQFQREWRPKSLVTVSAEYDSKAIN-SAPKMGLAIALKP 274 (274)
Q Consensus 234 ~v~~~~~~~l~~~~~l~ls~~~d~~~~~-~~~k~G~~l~~~~ 274 (274)
.|+++|+|+|+|++++++|+++|+++++ +.||||++|+||+
T Consensus 254 ~v~~~y~~kl~p~v~ltls~~iD~~~l~~~~~K~Gl~l~l~~ 295 (295)
T 3emn_X 254 LIGLGYTQTLKPGIKLTLSALLDGKNVNAGGHKLGLGLEFQA 295 (295)
T ss_dssp EEEEEEEEEEETTEEEEEEEEEESSCTTTSCCEEEEEEEEEC
T ss_pred EEEEEEEEecCCCcEEEEEEEECccccCCCCCcEEEEEEEeC
Confidence 9999999999999999999999999986 7899999999986
No 2
>3emn_X Voltage-dependent anion-selective channel protein; VDAC1, eukaryotic membrane protein, beta barrel, AP ION transport, mitochondrion, outer membrane; HET: MC3; 2.30A {Mus musculus} PDB: 2k4t_A 2jk4_A
Probab=98.62 E-value=7.6e-05 Score=65.46 Aligned_cols=183 Identities=11% Similarity=0.122 Sum_probs=123.0
Q ss_pred eEEEEecCCCCcEEEEEEEeeC--ceEEEEEEEEEEeCCeEEE--EEEeCCC-ceEEEEEEcccCCCeEEEEEEEe--cC
Q 023992 28 KFTLSVPSSTGLGLSATGLKKD--EIFIGDINSVYKSGNTTVD--VKVDTYS-SVSTKVTMVDILPSTKAALSFRI--PD 100 (274)
Q Consensus 28 ~l~~~~~~~~g~~f~~~~~~~~--~~~~g~~~~~~~~~~~~~~--~~~~t~~-~l~~~i~~~~~~~glk~~~~~~~--p~ 100 (274)
+|++..+-..|+.........+ +.-.|.++..|+.+.+.+. +..+..+ .+.....+. .+++-+..++.+ +.
T Consensus 96 ~i~~~~~l~~Glk~~~~~~~~P~~~~ks~kl~~~Y~~~~~~~~~~v~l~~~~P~i~~s~v~g--~~~~~~G~e~~yd~~~ 173 (295)
T 3emn_X 96 EITVEDQLARGLKLTFDSSFSPNTGKKNAKIKTGYKREHINLGCDVDFDIAGPSIRGALVLG--YEGWLAGYQMNFETSK 173 (295)
T ss_dssp EEEEESSSSTTEEEEEEEEEETTTTEEEEEEEEEEEETTEEEEEEEEECTTCCEEEEEEEEE--ETTEEEEEEEEEETTT
T ss_pred EEEEccccCCceEEEEEEEECCCCCCcceEEEEEEEcCCEeEEEEEEeccCCCEEEEEEEEe--eCCEEEEEEEEEEeCC
Confidence 5556554455766655555433 3558889999998865554 3342222 333333321 366655555543 22
Q ss_pred C--CceEEEEEEcCCceEEEEEeeCCCCCeeeEEEEE-ccCCeEEEEEEEEeccCCcceeeEEEEeeec-CCcEEEEEEc
Q 023992 101 H--KSGKLDLQYLHPHAAIDSSIGLNPTPLLELSATI-GSKELVLGGEVGFDTASASFIKYTAGIGLNK-PDFSAALLLA 176 (274)
Q Consensus 101 ~--~~~~~~~~y~~~~~~~~~~~~l~~~p~~~~s~~~-~~~~~~lG~e~~yd~~~~~~~~~~~~~~Y~~-~~~~~~~~~~ 176 (274)
. ....+.+.|..+++.+.+.++- ...+..|..- ..+++.+|+|+.|+...++ ...++|..|.- ++..+.++++
T Consensus 174 ~~~t~~n~~~gY~~~d~~~s~~l~~--~~~~~aSy~qkvs~~~~~g~e~~~~~~~~~-~~~tvG~ky~ld~~~~vKakvn 250 (295)
T 3emn_X 174 SRVTQSNFAVGYKTDEFQLHTNVND--GTEFGGSIYQKVNKKLETAVNLAWTAGNSN-TRFGIAAKYQVDPDACFSAKVN 250 (295)
T ss_dssp TEEEEEEEEEEEECSSEEEEEEEET--TTEEEEEEEEECSSSEEEEEEEEEETTEEE-EEEEEEEEECCSSSEEEEEEEE
T ss_pred CCeeeEEEEEEEcCCCEEEEEEECC--CCeEEEEEEEECCCceEEEEEEEEeccCCC-cEEEEEEEEEcCCCCEEEEEEC
Confidence 2 3466889999999999888852 3456666553 5789999999999986544 57888889986 6899999998
Q ss_pred cCcCeEEEEEEEEeCCcceEEEEEEEEec---cCccEEEEEEE
Q 023992 177 DKGQALKASYIHAVDPFTSVAAEMTHRFS---TYQNSFTIGSS 216 (274)
Q Consensus 177 ~~~~~~~~S~~~kvs~~~~~g~e~~~~~~---~~~~~~~vg~~ 216 (274)
+ .+.+.+.|-|++.|.+.+..-.+.+.. .+...+.+|..
T Consensus 251 ~-~g~v~~~y~~kl~p~v~ltls~~iD~~~l~~~~~K~Gl~l~ 292 (295)
T 3emn_X 251 N-SSLIGLGYTQTLKPGIKLTLSALLDGKNVNAGGHKLGLGLE 292 (295)
T ss_dssp T-TSEEEEEEEEEEETTEEEEEEEEEESSCTTTSCCEEEEEEE
T ss_pred C-CCEEEEEEEEecCCCcEEEEEEEECccccCCCCCcEEEEEE
Confidence 8 599999999999999766665555543 24556666543
No 3
>3bs0_A TODX; beta barrel, outer membrane protein, transport protein; HET: C8E; 2.60A {Pseudomonas putida} PDB: 3brz_A*
Probab=91.57 E-value=7.7 Score=35.11 Aligned_cols=50 Identities=14% Similarity=0.123 Sum_probs=37.2
Q ss_pred CeEEEEEEEEeCCcceEEEEEEEEecc--------------------------CccEEEEEEEEeeCCCCeEEEEe
Q 023992 180 QALKASYIHAVDPFTSVAAEMTHRFST--------------------------YQNSFTIGSSHLVDPLTLVKTRL 229 (274)
Q Consensus 180 ~~~~~S~~~kvs~~~~~g~e~~~~~~~--------------------------~~~~~~vg~~~~ld~~~~~Kakv 229 (274)
..+.++..|++.+++.+.+++.|..-+ ....+.+|+.|++++..++|+=+
T Consensus 279 ~~~~~g~~~~~~~~~~l~~d~~~~~WS~~~~~l~~~~~~~~~~~~~~~~~~~~d~~~~~lG~ey~~~~~~~lRaG~ 354 (439)
T 3bs0_A 279 ASLTLGLAHQFNERWVVAADIKRAYWGDVMDSMNVAFISQLGGIDVALPHRYQDITVASIGTAYKYNNDLTLRAGY 354 (439)
T ss_dssp CEEEEEEEEESSSSEEEEEEEEEECGGGCCC-CCCEEEETTEEEEECCCCCCCCEEEEEEEEEEECSSSEEEEEEE
T ss_pred cEEEEeEEEEeCCCEEEEEEEEEEEccchhhheeeeecCCCCCccccCCCCceeeeEEEEEEEEEcCCCEEEEEee
Confidence 668999999999999999999986321 12246777777777777777654
No 4
>3bry_A TBUX; beta barrel, outer membrane protein, transport protein; HET: C8E; 3.20A {Ralstonia pickettii}
Probab=90.85 E-value=8.9 Score=34.58 Aligned_cols=25 Identities=24% Similarity=0.300 Sum_probs=22.1
Q ss_pred CeEEEEEEEEeCCcceEEEEEEEEe
Q 023992 180 QALKASYIHAVDPFTSVAAEMTHRF 204 (274)
Q Consensus 180 ~~~~~S~~~kvs~~~~~g~e~~~~~ 204 (274)
..+.++..|++.+++.+.+++.|..
T Consensus 279 ~~~~~g~~~~~~~~~~l~~d~~~~~ 303 (441)
T 3bry_A 279 AQLTVGISHQFNDQLSVSADYQRVF 303 (441)
T ss_dssp CEEEEEEEEESSSSEEEEEEEEEEC
T ss_pred cEEEEeEEEEeCCCEEEEEEEEEEE
Confidence 6789999999999999999998863
No 5
>3nsg_A Outer membrane protein F; porin, beta barrel, beta barrel MEMB protein; HET: LDA TAM FLC TLA; 2.79A {Salmonella enterica subsp}
Probab=88.98 E-value=11 Score=32.91 Aligned_cols=134 Identities=7% Similarity=-0.013 Sum_probs=81.3
Q ss_pred CCeEEEEEEEEeccC------CcceeeEEEEeeecCCcEEEEEEcc---------------CcCeEEEEEEEEeCCcceE
Q 023992 138 KELVLGGEVGFDTAS------ASFIKYTAGIGLNKPDFSAALLLAD---------------KGQALKASYIHAVDPFTSV 196 (274)
Q Consensus 138 ~~~~lG~e~~yd~~~------~~~~~~~~~~~Y~~~~~~~~~~~~~---------------~~~~~~~S~~~kvs~~~~~ 196 (274)
.+|.+++...+.-.. ..-..|.+++.|..+.+.+.+-... +...+.+.--..+.+ +.+
T Consensus 147 ~G~~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~Y~~g~l~~~~~Y~~~~~~~~~~~~~~~~~~~~~~~~g~~Y~~g~-~~l 225 (341)
T 3nsg_A 147 DGLSFGIQYQGKNQDNHSINSQNGDGVGYTMAYEFDGFGVTAAYSNSKRTNDQQDRDGNGDRAESRAVGAKYDANN-VYL 225 (341)
T ss_dssp SSEEEEEEEECCBCSSSCGGGCBCSEEEEEEEEEETTEEEEEEEEEECCCSTTSSSSSCCSCEEEEEEEEEEEETT-EEE
T ss_pred CCEEEEEEEEeCCCCCccccccCCceEEEEEEEEcCCEEEEEEEEeecCcccccccccCccceEEEEEEeEEEeCC-EEE
Confidence 345666554443221 2234688888888888777765421 011233333333433 566
Q ss_pred EEEEEEEec---------------cCccEEEEEEEEeeCCCCeEEEEe-----cC----------CceEEEEEEEEeeCC
Q 023992 197 AAEMTHRFS---------------TYQNSFTIGSSHLVDPLTLVKTRL-----SD----------GGKFAVQFQREWRPK 246 (274)
Q Consensus 197 g~e~~~~~~---------------~~~~~~~vg~~~~ld~~~~~Kakv-----~s----------~g~v~~~~~~~l~~~ 246 (274)
++...+... .+...++++++|++.+..++++-. +. .-.+.+.+.+.|+++
T Consensus 226 ~a~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~ga~Y~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~lg~~Y~LSKr 305 (341)
T 3nsg_A 226 AAVYAETRNMSIVENTVTDTVEMANKTQNLEVVAQYQFDFGLRPAISYVQSKGKQLNGAGGSADLAKYIQAGATYYFNKN 305 (341)
T ss_dssp EEEEEEESSCCCEECTTTCCEECCSEEEEEEEEEEECCTTSCCEEEEEEEEEEESCTTTTSCEEEEEEEEEEEEECCCSS
T ss_pred EEEEEEEEeccccCcccccccccceEEEEEEEEEEEEecCCcEEEEEEEEEeccccccccCCcCccEEEEEEEEEEecCC
Confidence 665554321 133578999999998877665532 11 125788899999999
Q ss_pred eEEEEEEEEecCC--------CCCCCeeEEEEEE
Q 023992 247 SLVTVSAEYDSKA--------INSAPKMGLAIAL 272 (274)
Q Consensus 247 ~~l~ls~~~d~~~--------~~~~~k~G~~l~~ 272 (274)
..+-+...++.-+ ....-.+++||..
T Consensus 306 T~lY~~y~~~~~~~~~~~~~~~~~dd~~~vGlry 339 (341)
T 3nsg_A 306 MNVWVDYRFNLLDENDYSSSYVGTDDQAAVGITY 339 (341)
T ss_dssp EEEEEEEEEECCCCCSSCTTTTCSSCEEEEEEEE
T ss_pred EEEEEEEEEecccCccccccccCcCCEEEEEEEE
Confidence 9999998888732 1235789998875
No 6
>3pgu_A Long-chain fatty acid transport protein; outer membrane beta barrel, lipid transport, outer membrane; HET: C8E 2PE OLA; 1.70A {Escherichia coli k-12} SCOP: f.4.3.4 PDB: 3pgs_A* 1t16_A* 1t1l_A* 3dwn_A* 2r4p_A* 3pgr_A* 2r4n_A* 2r4l_A* 2r89_A 2r4o_A* 3pf1_A* 2r8a_A* 2r88_A
Probab=86.45 E-value=9.6 Score=34.52 Aligned_cols=75 Identities=9% Similarity=0.037 Sum_probs=46.6
Q ss_pred CeEEEEEEEEeCCcceEEEEEEEEeccCccEEEEEEEEeeCCCC---eEEEEecCCceEEEEEEEEeeCCeEEEEEEEEe
Q 023992 180 QALKASYIHAVDPFTSVAAEMTHRFSTYQNSFTIGSSHLVDPLT---LVKTRLSDGGKFAVQFQREWRPKSLVTVSAEYD 256 (274)
Q Consensus 180 ~~~~~S~~~kvs~~~~~g~e~~~~~~~~~~~~~vg~~~~ld~~~---~~Kakv~s~g~v~~~~~~~l~~~~~l~ls~~~d 256 (274)
..+.++..|++.+++.+.+++.|..=+.-..+.+- .++.. ...-.-.+.+.+.+..++++++.+++..+...|
T Consensus 273 ~~~~~g~~~~~~~~~~l~~d~~~~~WS~~~~~~~~----~~~g~~~~~~~~~~~D~~~~~lG~eY~~~~~~~lRaG~~yd 348 (427)
T 3pgu_A 273 EMWEVSGYNRVDPQWAIHYSLAYTSWSQFQQLKAT----STSGDTLFQKHEGFKDAYRIALGTTYYYDDNWTFRTGIAFD 348 (427)
T ss_dssp EEEEEEEEEEEETTEEEEEEEEEEEESSCSCEEEE----EETTEEEEEECCCCEEEEEEEEEEEEECSSSEEEEEEEEEE
T ss_pred cEEEEEEEEecCCCEEEEEEEEEEEeccccceEEE----cCCCcccccccCCceeccEEEEEEEEEcCCCEEEEEEEEEc
Confidence 67888999999999999999999743321112211 10110 011122344667777777787778877777777
Q ss_pred cC
Q 023992 257 SK 258 (274)
Q Consensus 257 ~~ 258 (274)
..
T Consensus 349 ~s 350 (427)
T 3pgu_A 349 DS 350 (427)
T ss_dssp EC
T ss_pred cC
Confidence 64
No 7
>3dwo_X Probable outer membrane protein; beta barrel; HET: C8E; 2.20A {Pseudomonas aeruginosa}
Probab=85.87 E-value=20 Score=32.56 Aligned_cols=49 Identities=12% Similarity=0.095 Sum_probs=35.3
Q ss_pred CeEEEEEEEEeCCcceEEEEEEEEecc----------------------CccEEEEEEEEeeCCCCeEEEE
Q 023992 180 QALKASYIHAVDPFTSVAAEMTHRFST----------------------YQNSFTIGSSHLVDPLTLVKTR 228 (274)
Q Consensus 180 ~~~~~S~~~kvs~~~~~g~e~~~~~~~----------------------~~~~~~vg~~~~ld~~~~~Kak 228 (274)
..+.++..+++++++.+.+++.|..-+ ....+++|+.|++++..++|+=
T Consensus 286 ~~~~lg~~~~~~~~~~l~~d~~~~~wS~~~~~~~~~~~~~~~~~~~~~~d~~~~~lG~eY~~~~~~tlRaG 356 (451)
T 3dwo_X 286 AYASLDWVHQFNDRLSLGASATWTEWSSFQDLTLKSHGNTIVSIPYTYRNTWTLAVGGDYKVTDQWTMRAG 356 (451)
T ss_dssp CEEEEEEEEECSSSEEEEEEEEEECGGGCCEEEEEETTEEEEEEECCCCCEEEEEEEEEEESSSSEEEEEE
T ss_pred cEEEEEEEEEeCCCEEEEEEEEEEEecCcceeEEEcCCccccccccCceeeeEEEEEEEEEeCCCEEEEEE
Confidence 678889999999999999998886322 2346666666666666666653
No 8
>3prn_A Porin; integral membrane protein, pore eyelet mutant, membra protein; HET: C8E; 1.90A {Rhodobacter blasticus} SCOP: f.4.3.1 PDB: 1bh3_A* 1prn_A* 7prn_A* 6prn_A* 5prn_A* 2prn_A* 8prn_A* 1h6s_1
Probab=82.59 E-value=22 Score=30.44 Aligned_cols=114 Identities=11% Similarity=0.097 Sum_probs=65.6
Q ss_pred eeEEEEeeecCCcEEEEEEc--c----CcCeEEEEEEEEeCCcceEEEEEEEE-eccCccEEEEEEEEeeCCCCeEEEEe
Q 023992 157 KYTAGIGLNKPDFSAALLLA--D----KGQALKASYIHAVDPFTSVAAEMTHR-FSTYQNSFTIGSSHLVDPLTLVKTRL 229 (274)
Q Consensus 157 ~~~~~~~Y~~~~~~~~~~~~--~----~~~~~~~S~~~kvs~~~~~g~e~~~~-~~~~~~~~~vg~~~~ld~~~~~Kakv 229 (274)
.|.+++.|+..++.+++-.. . ..+.+.++.=..+.+.+.+++-..-. .......+.++..|.+ ..++|++-+
T Consensus 163 ~~~l~a~Yt~g~~~v~aaY~~d~ag~~D~~~~~l~~~y~fG~~~~v~~~Y~d~~d~~~~~~~gl~~~Y~v-~a~tv~a~y 241 (289)
T 3prn_A 163 EFGIAADWSNDMISLAAAYTTDAGGIVDNDIAFVGAAYKFNDAGTVGLNWYDNGLSTAGDQVTLYGNYAF-GATTVRAYV 241 (289)
T ss_dssp EEEEEEEEECSSEEEEEEEEESGGGCTTCCEEEEEEEECCSSSEEEEEEEEECTTSTTCSEEEEEEEEEE-TTEEEEEEE
T ss_pred eEEEEEEEecCCEEEEEEEeccCCCCCCccEEEEEEEEEcCCCeEEEEEEEccccccCCceEEEEEEeEe-cCeEEEEEE
Confidence 45555555555554444332 0 01334444444444333443332211 0123456788888888 778888886
Q ss_pred cC------CceEEEEEEEEeeCCeEEEEEEEEecCCCCCCCeeEEEEEE
Q 023992 230 SD------GGKFAVQFQREWRPKSLVTVSAEYDSKAINSAPKMGLAIAL 272 (274)
Q Consensus 230 ~s------~g~v~~~~~~~l~~~~~l~ls~~~d~~~~~~~~k~G~~l~~ 272 (274)
.+ ....++.+.+.|.++.+|..+..-+-.. +....+|+.++|
T Consensus 242 ~D~~~~~~~t~yGIg~~YDLGgGasl~~gy~~~~~~-~~~ad~Gv~F~F 289 (289)
T 3prn_A 242 SDIDRAGADTAYGIGADYQFAEGVKVSGSVQSGFAN-ETVADVGVRFDF 289 (289)
T ss_dssp EEECSTTCCCEEEEEEEEEEETTEEEEEEEEECTTC-CEEEEEEEEEEC
T ss_pred eccccCCCcceEEEEEEecCCCCeEEEEEEEEcCCC-ceEEeeeeEeeC
Confidence 53 2467999999999999999888754311 124677777664
No 9
>2por_A Porin; HET: C8E; 1.80A {Rhodobacter capsulatus} SCOP: f.4.3.1 PDB: 3por_A*
Probab=81.83 E-value=24 Score=30.16 Aligned_cols=63 Identities=8% Similarity=0.039 Sum_probs=41.5
Q ss_pred cEEEEEE--EEeeCCCCeEEEEec-----CCceEEEEEEEEeeCCeEEEEEEEEecCCCCCCCeeEEEEEE
Q 023992 209 NSFTIGS--SHLVDPLTLVKTRLS-----DGGKFAVQFQREWRPKSLVTVSAEYDSKAINSAPKMGLAIAL 272 (274)
Q Consensus 209 ~~~~vg~--~~~ld~~~~~Kakv~-----s~g~v~~~~~~~l~~~~~l~ls~~~d~~~~~~~~k~G~~l~~ 272 (274)
..+.+|+ +|.+.+..++++... +.-.+++.+++.|+|++++-.+...+-.+ +..-.+-+|+.+
T Consensus 230 ~~~~lga~~~y~~~~~~~~~~~y~~~~~d~a~~~~lg~~Y~Ls~~~~lya~y~~~~~~-~~~~~~~~Gvr~ 299 (301)
T 2por_A 230 KAYGLSVDSTFGATTVGGYVQVLDIDTIDDVTYYGLGASYDLGGGASIVGGIADNDLP-NSDMVADLGVKF 299 (301)
T ss_dssp EEEEEEEEEEETTEEEEEEEEEEEETTTEEEEEEEEEEEEEEETTEEEEEEEEEECSS-SCCCEEEEEEEE
T ss_pred ceEEEEEEEeEEcCCcEEEEEEEEcCCCCcccEEEEEEEEcCCCCeEEEEEEEeccCC-CCceeEEEEeEE
Confidence 4577888 888855444666553 22478999999999999998877766522 122345555543
No 10
>1pho_A Phosphoporin; outer membrane protein; 3.00A {Escherichia coli} SCOP: f.4.3.1
Probab=63.95 E-value=68 Score=27.27 Aligned_cols=116 Identities=9% Similarity=0.010 Sum_probs=68.1
Q ss_pred eeeEEEEeeecC--CcEEEEEEccC----------------cCeEEEEEEEEeCCcceEEEEEEEEec---------cCc
Q 023992 156 IKYTAGIGLNKP--DFSAALLLADK----------------GQALKASYIHAVDPFTSVAAEMTHRFS---------TYQ 208 (274)
Q Consensus 156 ~~~~~~~~Y~~~--~~~~~~~~~~~----------------~~~~~~S~~~kvs~~~~~g~e~~~~~~---------~~~ 208 (274)
..|.+++.|..+ .+.+.+-.... ...+.+..-..+.+ +.+++-...... .+.
T Consensus 166 ~~~~~~~~Y~~g~~~l~~~a~Y~~~~~~~~~~~~~~~~~~~~~~~~~g~~Y~~g~-~~l~a~Y~~~~~~~~~~~~~~~~~ 244 (330)
T 1pho_A 166 DGFGTSLTYDFGGSDFAISGAYTNSDRTNEQNLQSRGTGKRAEAWATGLKYDANN-IYLATFYSETRKMTPITGGFANKT 244 (330)
T ss_dssp SEEEEEEEEEETTTTEEEEEEEEEEECCGGGTTSSSSCSSEEEEEEEEEEEEETT-EEEEEEEEEEESCSCCSSSSCSEE
T ss_pred CeEEEEEEEEcCCCCEEEEEEEEEecccccccccccCCccchheEEEEEEEEeCC-EEEEEEEEeeEEccCCCCCcceee
Confidence 468888888887 77776654210 11222333334443 566665544321 123
Q ss_pred cEEEEEEEEeeCCCCeEEEE-----ec------C---CceEEEEEEEEeeCCeEEEEEEEEecCC------CCCCCeeEE
Q 023992 209 NSFTIGSSHLVDPLTLVKTR-----LS------D---GGKFAVQFQREWRPKSLVTVSAEYDSKA------INSAPKMGL 268 (274)
Q Consensus 209 ~~~~vg~~~~ld~~~~~Kak-----v~------s---~g~v~~~~~~~l~~~~~l~ls~~~d~~~------~~~~~k~G~ 268 (274)
..+.+|++|.+.+...+.+- .+ + .-.+.+.+.+.|+|...+-+....+..+ .....-+++
T Consensus 245 ~~~~~ga~Y~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~lg~~Y~LSKrT~lY~~y~~~~~~~~~~~~~~~~~~~~v 324 (330)
T 1pho_A 245 QNFEAVAQYQFDFGLRPSLGYVLSKGKDIEGIGDEDLVNYIDVGATYYFNKNMSAFVDYKINQLDSDNKLNINNDDIVAV 324 (330)
T ss_dssp EEEEEEEEECCSSSEEEEEEEEEEEEESBTTTBCCEEEEEEEEEEEEESSSSEEEEEEEEEECCCSSCTTCCCCCCEEEE
T ss_pred EEEEEEEEEeecCCeeEEEEEEEecccCccCCCCcceEEEEEEEEEEEecCCEEEEEEEEEccccCccccCCCCCcEEEE
Confidence 56889999999776656542 11 1 1357788999999998887766664321 112456777
Q ss_pred EEEE
Q 023992 269 AIAL 272 (274)
Q Consensus 269 ~l~~ 272 (274)
|+..
T Consensus 325 Girh 328 (330)
T 1pho_A 325 GMTY 328 (330)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 7754
No 11
>3vy8_X Outer membrane protein; beta-barrel, porin, channel; 2.12A {Neisseria meningitidis} PDB: 3a2r_X* 3a2t_X* 3a2u_X* 3a2s_X 3vy9_X 3vzt_X 3vzw_X*
Probab=62.36 E-value=80 Score=27.61 Aligned_cols=96 Identities=13% Similarity=0.073 Sum_probs=58.8
Q ss_pred eeeEEEEeeecCCcEEEEE--Ecc----------------------CcCeEEEEEEEEeCCcceEEEEEEEEec------
Q 023992 156 IKYTAGIGLNKPDFSAALL--LAD----------------------KGQALKASYIHAVDPFTSVAAEMTHRFS------ 205 (274)
Q Consensus 156 ~~~~~~~~Y~~~~~~~~~~--~~~----------------------~~~~~~~S~~~kvs~~~~~g~e~~~~~~------ 205 (274)
..|.+++.|....+.+.+- ... +.+.+.+.--...+ .+.+++..+....
T Consensus 184 ~~~~~~~~Y~~g~~~~~~a~~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lga~Yd~~-~~~laa~Y~~~~~~~~~~~ 262 (355)
T 3vy8_X 184 ESYHAGLKYENAGFFGQYAGSFAKYADLNTDAERVAVNTANAHPVKDYQVHRVVAGYDAN-DLYVSVAGQYEAAKNNEVG 262 (355)
T ss_dssp CEEEEEEEEEETTEEEEEEEEEEEEEEECTTSCBCCTTCTTCEEEEEEEEEEEEEEEEET-TEEEEEEEEEEEEEECSSS
T ss_pred cEEEEEEEEecCCEEEEEEhhehhccccccccccccccccccccCCcceEEEEEEEEEec-CEEEEEEEEEecccccccc
Confidence 4688888888877777655 211 01123333333333 3666665554321
Q ss_pred ------cCccEEEEEEEEeeCCCCeEEE--------EecC-------CceEEEEEEEEeeCCeEEEEEE
Q 023992 206 ------TYQNSFTIGSSHLVDPLTLVKT--------RLSD-------GGKFAVQFQREWRPKSLVTVSA 253 (274)
Q Consensus 206 ------~~~~~~~vg~~~~ld~~~~~Ka--------kv~s-------~g~v~~~~~~~l~~~~~l~ls~ 253 (274)
.+...++++++|.+++ .++++ |++. .-.+.+.+.+.|+++.++-+..
T Consensus 263 ~~~~~~~k~~~~~l~a~Y~~g~-~~~~~sY~~~~k~k~~~~~~~~~~~~~~~vG~~Y~lsKrt~~Ya~y 330 (355)
T 3vy8_X 263 SIKGKKHEQTQVAATAAYRFGN-VTPRVSYAHGFKAKVNGVKDANYQYDQVIVGADYDFSKRTSALVSA 330 (355)
T ss_dssp TTTTCEEEEEEEEEEEEECBTT-EEEEEEEEEECCEEETTEEEGGGCEEEEEEEEEEESSSSEEEEEEE
T ss_pred ccccccceeeEEEEEEEEEcCC-eEEEEEEEEeccccccccccCCCcceEEEEEEEEEcCCCeEEEEEE
Confidence 1345899999999965 65554 3222 1368899999999998777665
No 12
>2fgq_X OMP32, outer membrane porin protein 32; malate, outer membrane protein, membrane protein; HET: BOG; 1.45A {Delftia acidovorans} SCOP: f.4.3.1 PDB: 2fgr_A 1e54_A
Probab=58.80 E-value=87 Score=26.84 Aligned_cols=119 Identities=13% Similarity=0.112 Sum_probs=70.9
Q ss_pred CCeEEEEEEEEeccC------CcceeeEEEEeeecCCcEEEEEEccC----------cCeEEEEEEEEeCCcceEEEEEE
Q 023992 138 KELVLGGEVGFDTAS------ASFIKYTAGIGLNKPDFSAALLLADK----------GQALKASYIHAVDPFTSVAAEMT 201 (274)
Q Consensus 138 ~~~~lG~e~~yd~~~------~~~~~~~~~~~Y~~~~~~~~~~~~~~----------~~~~~~S~~~kvs~~~~~g~e~~ 201 (274)
.+|.+++...+.-.. ..-..|.+++.|....+.+.+-.... ...+.+.--.++.+ +.+++...
T Consensus 146 ~G~~~~a~Y~~g~~~~~g~~~~~~~~~~~~~~Y~~g~~~~~~~Y~~~~~~~~~~~~~~~~~~~g~~Y~~g~-~~l~~~Y~ 224 (332)
T 2fgq_X 146 GGFNAGFGYAFDEKQTIGTADSVGRYIGGYVAYDNGPLSASLGLAQQKTAVGGLATDRDEITLGASYNFGV-AKLSGLLQ 224 (332)
T ss_dssp TTEEEEEEEECCTTCCBTTBSSTTCEEEEEEEEECSSEEEEEEEEEEEEEETTEEEEEEEEEEEEEEECSS-CEEEEEEE
T ss_pred CCEEEEEEEEcCCCCcCCCCCCCCcEEEEEEEEecCCEEEEEEEEEEecCCCCcccceEEEEEEEEEEECC-EEEEEEEE
Confidence 356777665543211 12246888888888877776654220 12222222234443 56666554
Q ss_pred EEec-------cCccEEEEEEEEeeCCCCeEEEEec---------CCceEEEEEEEEeeCCeEEEEEEEEec
Q 023992 202 HRFS-------TYQNSFTIGSSHLVDPLTLVKTRLS---------DGGKFAVQFQREWRPKSLVTVSAEYDS 257 (274)
Q Consensus 202 ~~~~-------~~~~~~~vg~~~~ld~~~~~Kakv~---------s~g~v~~~~~~~l~~~~~l~ls~~~d~ 257 (274)
.... .+...+.+|++|.+.+...+++-.. ..-.+.+.+.+.|+++..+-+......
T Consensus 225 ~~~~~~~~~~~~~~~~~~~ga~y~~t~~~~~~~~y~~~~~~~~~~~~~~~~lg~~Y~LSKrT~lY~~~~~~~ 296 (332)
T 2fgq_X 225 QTKFKRDIGGDIKTNSYMLGASAPVGGVGEVKLQYALYDQKAIDSKAHQITLGYVHNLSKRTALYGNLAFLK 296 (332)
T ss_dssp EEEEEETTSCEEEEEEEEEEEEEEETTTEEEEEEEEEEEEGGGTEEEEEEEEEEEEESSSSEEEEEEEEEEE
T ss_pred EEEccCCCCCcceeeEEEEEEEEEecCceEEEEEEEEEccCCCCCCeEEEEEEEEEccccchHheeeeeeEe
Confidence 4321 1345688999999977777776532 113578889999999988777665544
No 13
>1uyn_X NALP; autotransporter, translocator domain, membrane protein, OUTE membrane, beta-domain, beta-barrel; HET: CXE; 2.60A {Neisseria meningitidis} SCOP: f.4.5.1 PDB: 1uyo_X*
Probab=57.23 E-value=47 Score=28.26 Aligned_cols=64 Identities=9% Similarity=-0.075 Sum_probs=39.4
Q ss_pred ceEEEEEEEEec-cCccEEEEEEEEee-CCCCeEEEE---------------ecC-CceEEEEEEEEeeCCeEEEEEEEE
Q 023992 194 TSVAAEMTHRFS-TYQNSFTIGSSHLV-DPLTLVKTR---------------LSD-GGKFAVQFQREWRPKSLVTVSAEY 255 (274)
Q Consensus 194 ~~~g~e~~~~~~-~~~~~~~vg~~~~l-d~~~~~Kak---------------v~s-~g~v~~~~~~~l~~~~~l~ls~~~ 255 (274)
..+|+++.+.+. .-.....++++|.+ ++...+.+. ++. ...+++.++.++++++++.++.+-
T Consensus 210 ~~lG~r~~~~~~~~~~~~~~~~~~h~~~~~~~~~~a~f~~~~~~~F~~~g~~~~~~~~~~g~G~~~~~~~~~~l~~~y~~ 289 (308)
T 1uyn_X 210 GLAGLKLSQPLSDKAVLFATAGVERDLNGRDYTVTGGFTGATAATGKTGARNMPHTRLVAGLGADVEFGNGWNGLARYSY 289 (308)
T ss_dssp EEEEEEEEEECSSSEEEEEEEEEEEESSCCCCCCCC-----------------CCEEEEEEEEEEEEEETTEEEEEEEEE
T ss_pred EeeeEEEEEEecCceEEEEEEEEEeccCCCCcceEEEeecCCCceEEEccccCCCceEEEeeeEEEEecCCEEEEEEEEE
Confidence 567777777663 22456778888887 333222222 222 257888888999998777666655
Q ss_pred ec
Q 023992 256 DS 257 (274)
Q Consensus 256 d~ 257 (274)
..
T Consensus 290 ~~ 291 (308)
T 1uyn_X 290 AG 291 (308)
T ss_dssp EE
T ss_pred EE
Confidence 54
No 14
>2por_A Porin; HET: C8E; 1.80A {Rhodobacter capsulatus} SCOP: f.4.3.1 PDB: 3por_A*
Probab=52.59 E-value=1.1e+02 Score=25.94 Aligned_cols=21 Identities=10% Similarity=0.091 Sum_probs=12.2
Q ss_pred cEEEEEEEEeeCCCCeEEEEe
Q 023992 209 NSFTIGSSHLVDPLTLVKTRL 229 (274)
Q Consensus 209 ~~~~vg~~~~ld~~~~~Kakv 229 (274)
..+.+|+.|.|.+++.+-+-+
T Consensus 261 ~~~~lg~~Y~Ls~~~~lya~y 281 (301)
T 2por_A 261 TYYGLGASYDLGGGASIVGGI 281 (301)
T ss_dssp EEEEEEEEEEEETTEEEEEEE
T ss_pred cEEEEEEEEcCCCCeEEEEEE
Confidence 455666666665555555544
No 15
>2zfg_A Outer membrane protein F; OMPF porin, ordered waters, ION transport, phage recognition, transmembrane, transport; HET: C8E; 1.59A {Escherichia coli} SCOP: f.4.3.1 PDB: 1opf_A* 2omf_A* 2zld_A 3k19_A 3k1b_A 3o0e_A* 3poq_A* 3pou_A* 3pox_A* 3hw9_A* 3hwb_A* 1hxx_A 3fyx_A* 1bt9_A 1mpf_A* 1gfq_A* 1gfp_A* 1gfm_A* 1gfo_A* 1hxu_A ...
Probab=52.51 E-value=1.1e+02 Score=26.17 Aligned_cols=134 Identities=8% Similarity=-0.063 Sum_probs=74.1
Q ss_pred CCeEEEEEEEEecc-----CCcceeeEEEEeeecCCcEEEEEEccC----------------cCeEEEEEEEEeCCcceE
Q 023992 138 KELVLGGEVGFDTA-----SASFIKYTAGIGLNKPDFSAALLLADK----------------GQALKASYIHAVDPFTSV 196 (274)
Q Consensus 138 ~~~~lG~e~~yd~~-----~~~~~~~~~~~~Y~~~~~~~~~~~~~~----------------~~~~~~S~~~kvs~~~~~ 196 (274)
.+|.+++.....-. ...-..|.+++.|..+.+.+.+-.... ...+.+..-.++. .+.+
T Consensus 149 ~G~~~~~~y~~~~~~~~~~~~~~~~~~~~~~Y~~g~l~~~~~Y~~~~~~~~~~~~~~~~~~~~~~~~~g~~Y~~~-~~~l 227 (340)
T 2zfg_A 149 DGLNFAVQYLGKNERDTARRSNGDGVGGSISYEYEGFGIVGAYGAADRTNLQEAQPLGNGKKAEQWATGLKYDAN-NIYL 227 (340)
T ss_dssp TTEEEEEEEECCBCCSSSTTCBCCEEEEEEEEEETTEEEEEEEEEEECCHHHHTSSBCCCSEEEEEEEEEEEEET-TEEE
T ss_pred CCeEEEEEEecCCCCCccccccCCeEEEEEEEecCCEEEEEEEEEecCcccccccccCCCceeeEEEEEEEEEcC-CEEE
Confidence 45666665433211 112346888888887777776654210 0122222222333 2455
Q ss_pred EEEEEEEe---------------ccCccEEEEEEEEeeCCCCeEEEE-----ec---------CCceEEEEEEEEeeCCe
Q 023992 197 AAEMTHRF---------------STYQNSFTIGSSHLVDPLTLVKTR-----LS---------DGGKFAVQFQREWRPKS 247 (274)
Q Consensus 197 g~e~~~~~---------------~~~~~~~~vg~~~~ld~~~~~Kak-----v~---------s~g~v~~~~~~~l~~~~ 247 (274)
++...... ..+...+.++++|.+.+...+.+- .+ ..-.+.+.+.+.|+++.
T Consensus 228 ~a~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~ga~y~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~lg~~Y~lSKrT 307 (340)
T 2zfg_A 228 AANYGETRNATPITNKFTNTSGFANKTQDVLLVAQYQFDFGLRPSIAYTKSKAKDVEGIGDVDLVNYFEVGATYYFNKNM 307 (340)
T ss_dssp EEEEEEEESCSEEEETTTTEEEECSEEEEEEEEEEECCTTSEEEEEEEEEEEEEEETTTEEEEEEEEEEEEEEEEEETTE
T ss_pred EEEEEEEEecCcCCcccccccccceeEEEEEEEEEEEecCCeeEEEEEEEEeccccCCCCCcceEEEEEEEEEEEecCCe
Confidence 55444321 123456889999999776666542 11 11367888999999998
Q ss_pred EEEEEEEEecCC------CCCCCeeEEEEEE
Q 023992 248 LVTVSAEYDSKA------INSAPKMGLAIAL 272 (274)
Q Consensus 248 ~l~ls~~~d~~~------~~~~~k~G~~l~~ 272 (274)
.+-+....+..+ .....-+++||..
T Consensus 308 ~lY~~~~~~~~~~~~~~~~~~~~~~~vGirh 338 (340)
T 2zfg_A 308 STYVDYIINQIDSDNKLGVGSDDTVAVGIVY 338 (340)
T ss_dssp EEEEEEEEECCCTTCTTCCCCBCEEEEEEEE
T ss_pred EEEEEEEEeccCCccccCCCCCcEEEEEEEE
Confidence 888777665421 1123467777754
No 16
>3vy8_X Outer membrane protein; beta-barrel, porin, channel; 2.12A {Neisseria meningitidis} PDB: 3a2r_X* 3a2t_X* 3a2u_X* 3a2s_X 3vy9_X 3vzt_X 3vzw_X*
Probab=51.88 E-value=1.2e+02 Score=26.43 Aligned_cols=41 Identities=12% Similarity=0.111 Sum_probs=22.3
Q ss_pred EEEEcc-cCCCeEEEEEEEecC--------------CCceEEEEEEcCCceEEEEE
Q 023992 80 KVTMVD-ILPSTKAALSFRIPD--------------HKSGKLDLQYLHPHAAIDSS 120 (274)
Q Consensus 80 ~i~~~~-~~~glk~~~~~~~p~--------------~~~~~~~~~y~~~~~~~~~~ 120 (274)
.|.+.. -..|+++.+..++.+ ....-+.+.|.+..+.+.+.
T Consensus 147 ~v~Y~sp~f~G~~~~~~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~g~~~~~~a 202 (355)
T 3vy8_X 147 SVRYDSPVFAGFSGSVQYVPRDNANDVDKYKHTKSSRESYHAGLKYENAGFFGQYA 202 (355)
T ss_dssp EEEEECCCBTTEEEEEEEECHHHHCSTTTTSCCSCCCCEEEEEEEEEETTEEEEEE
T ss_pred EEEEECCccCCEEEEEEEEcCCCCCCccccccccCCCcEEEEEEEEecCCEEEEEE
Confidence 455554 456777666655311 12234667777776666554
No 17
>1pho_A Phosphoporin; outer membrane protein; 3.00A {Escherichia coli} SCOP: f.4.3.1
Probab=49.16 E-value=1.2e+02 Score=25.62 Aligned_cols=73 Identities=11% Similarity=0.046 Sum_probs=42.2
Q ss_pred ceeeEEEEeeecCCcEEEEEEcc-------------CcCeEEEEEEEEeCCcceEEEEEEEEecc---------CccEEE
Q 023992 155 FIKYTAGIGLNKPDFSAALLLAD-------------KGQALKASYIHAVDPFTSVAAEMTHRFST---------YQNSFT 212 (274)
Q Consensus 155 ~~~~~~~~~Y~~~~~~~~~~~~~-------------~~~~~~~S~~~kvs~~~~~g~e~~~~~~~---------~~~~~~ 212 (274)
...|.+++.|.-..+.+.+.... +...+.+..-.++.+.+.+++...+.... +...+.
T Consensus 207 ~~~~~~g~~Y~~g~~~l~a~Y~~~~~~~~~~~~~~~~~~~~~~ga~Y~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~ 286 (330)
T 1pho_A 207 AEAWATGLKYDANNIYLATFYSETRKMTPITGGFANKTQNFEAVAQYQFDFGLRPSLGYVLSKGKDIEGIGDEDLVNYID 286 (330)
T ss_dssp EEEEEEEEEEEETTEEEEEEEEEEESCSCCSSSSCSEEEEEEEEEEECCSSSEEEEEEEEEEEEESBTTTBCCEEEEEEE
T ss_pred hheEEEEEEEEeCCEEEEEEEEeeEEccCCCCCcceeeEEEEEEEEEeecCCeeEEEEEEEecccCccCCCCcceEEEEE
Confidence 34567777777666666555421 01223444445666666666655443211 235678
Q ss_pred EEEEEeeCCCCeEEE
Q 023992 213 IGSSHLVDPLTLVKT 227 (274)
Q Consensus 213 vg~~~~ld~~~~~Ka 227 (274)
+|+.|.|.+.+.+=+
T Consensus 287 lg~~Y~LSKrT~lY~ 301 (330)
T 1pho_A 287 VGATYYFNKNMSAFV 301 (330)
T ss_dssp EEEEEESSSSEEEEE
T ss_pred EEEEEEecCCEEEEE
Confidence 888999977776654
No 18
>3qra_A AIL, attachment invasion locus protein; beta-barrel protein, attachment and invasion virulence, LAMI heparin, cell invasion; HET: C8E; 1.80A {Yersinia pestis} SCOP: f.4.1.0 PDB: 3qrc_A*
Probab=47.10 E-value=91 Score=23.63 Aligned_cols=24 Identities=21% Similarity=0.285 Sum_probs=16.8
Q ss_pred ceEEEEEEEEeeCCeEEEEEEEEe
Q 023992 233 GKFAVQFQREWRPKSLVTVSAEYD 256 (274)
Q Consensus 233 g~v~~~~~~~l~~~~~l~ls~~~d 256 (274)
..+++..|..+.|++.+.+.-+..
T Consensus 116 ~~~GaGvey~~~~n~~~~~eY~y~ 139 (157)
T 3qra_A 116 LAYGAGLQFNPHPNFVIDASYEYS 139 (157)
T ss_dssp EEEEEEEEECSSTTEEEEEEEEEE
T ss_pred eEEEEEEEEEecCCEEEEEEEEEE
Confidence 446677777888887777776553
No 19
>3kvn_X Esterase ESTA; beta barrel, alpha-beta-alpha motif, cell membrane, cell out membrane, hydrolase, membrane, transmembrane; HET: C8E; 2.50A {Pseudomonas aeruginosa}
Probab=46.01 E-value=1.9e+02 Score=27.09 Aligned_cols=64 Identities=9% Similarity=0.059 Sum_probs=42.9
Q ss_pred ceEEEEEEEEec-cCccEEEEEEEEee-CCCCeEEEEecC----------------CceEEEEEEEEeeCCeEEEEEEEE
Q 023992 194 TSVAAEMTHRFS-TYQNSFTIGSSHLV-DPLTLVKTRLSD----------------GGKFAVQFQREWRPKSLVTVSAEY 255 (274)
Q Consensus 194 ~~~g~e~~~~~~-~~~~~~~vg~~~~l-d~~~~~Kakv~s----------------~g~v~~~~~~~l~~~~~l~ls~~~ 255 (274)
..+|+++.+... .-.+.++++++|.+ ++...+++.+.. .+.+++..+.++.+++++.+..+-
T Consensus 534 ~~lG~r~~~~~~~~~~p~~~~~~~h~f~~~~~~~~~~f~~~~~~~f~~~g~~~~~~~~~~g~G~~~~~~~~~sl~~~y~~ 613 (632)
T 3kvn_X 534 LGAGLQGKYAFGSDTQLFAEYAHEREYEDDTQDLTMSLNSLPGNRFTLEGYTPQDHLNRVSLGFSQKLAPELSLRGGYNW 613 (632)
T ss_dssp EEEEEEEEEESSSSEEEEEEEEEEEESCCCCCEEEEEETTCTTCCEEEECCCCCSEEEEEEEEEEEEEETTEEEEEEEEE
T ss_pred EEEEEEEEEEecceEEEEEEEEEehhhCCCCcceEEEeecCCCCceEEccccCCCCEEEEEEEEEEEECCCEEEEEEEEE
Confidence 567777777765 33566777778877 444556665544 245788888899998777666655
Q ss_pred ec
Q 023992 256 DS 257 (274)
Q Consensus 256 d~ 257 (274)
..
T Consensus 614 ~~ 615 (632)
T 3kvn_X 614 RK 615 (632)
T ss_dssp EE
T ss_pred EE
Confidence 44
No 20
>2wjr_A Probable N-acetylneuraminic acid outer membrane C protein NANC; cell membrane, ION transport, transmembrane, porin, membrane transport; HET: EPE; 1.80A {Escherichia coli} PDB: 2wjq_A*
Probab=42.93 E-value=54 Score=26.67 Aligned_cols=23 Identities=17% Similarity=0.195 Sum_probs=16.0
Q ss_pred cCeEEEEEEEEeCCcceEEEEEE
Q 023992 179 GQALKASYIHAVDPFTSVAAEMT 201 (274)
Q Consensus 179 ~~~~~~S~~~kvs~~~~~g~e~~ 201 (274)
...+.++|..|+++++.+..-+.
T Consensus 53 g~E~~~~Y~~k~~d~~~l~PG~~ 75 (214)
T 2wjr_A 53 DVQVEVNYAIKLDDQWTVRPGML 75 (214)
T ss_dssp EEEEEEEECEESSSSEEEEEEEE
T ss_pred cEEEEEEEEEEcCCCEEEecceE
Confidence 56788888889888744444444
No 21
>3nsg_A Outer membrane protein F; porin, beta barrel, beta barrel MEMB protein; HET: LDA TAM FLC TLA; 2.79A {Salmonella enterica subsp}
Probab=40.91 E-value=1.7e+02 Score=25.08 Aligned_cols=17 Identities=6% Similarity=0.141 Sum_probs=9.7
Q ss_pred EEEEEEcCCceEEEEEe
Q 023992 105 KLDLQYLHPHAAIDSSI 121 (274)
Q Consensus 105 ~~~~~y~~~~~~~~~~~ 121 (274)
-+.+.|....+.+.+..
T Consensus 174 ~~~~~Y~~g~l~~~~~Y 190 (341)
T 3nsg_A 174 GYTMAYEFDGFGVTAAY 190 (341)
T ss_dssp EEEEEEEETTEEEEEEE
T ss_pred EEEEEEEcCCEEEEEEE
Confidence 45666666666555444
No 22
>2fgq_X OMP32, outer membrane porin protein 32; malate, outer membrane protein, membrane protein; HET: BOG; 1.45A {Delftia acidovorans} SCOP: f.4.3.1 PDB: 2fgr_A 1e54_A
Probab=38.36 E-value=1.9e+02 Score=24.67 Aligned_cols=19 Identities=21% Similarity=0.244 Sum_probs=11.0
Q ss_pred cEEEEEEEEeeCCCCeEEE
Q 023992 209 NSFTIGSSHLVDPLTLVKT 227 (274)
Q Consensus 209 ~~~~vg~~~~ld~~~~~Ka 227 (274)
..+.+|+.|.|.+.+.+=+
T Consensus 272 ~~~~lg~~Y~LSKrT~lY~ 290 (332)
T 2fgq_X 272 HQITLGYVHNLSKRTALYG 290 (332)
T ss_dssp EEEEEEEEEESSSSEEEEE
T ss_pred EEEEEEEEEccccchHhee
Confidence 4566666666655554443
No 23
>2lme_A Adhesin YADA; trimeric autotransporter, membrane protein, cell adhesion; NMR {Yersinia enterocolitica subsp}
Probab=38.31 E-value=1e+02 Score=21.80 Aligned_cols=35 Identities=17% Similarity=0.202 Sum_probs=22.1
Q ss_pred ceEEEEEEEEeccCccEEEEEEEEeeCCCCeEEEEec
Q 023992 194 TSVAAEMTHRFSTYQNSFTIGSSHLVDPLTLVKTRLS 230 (274)
Q Consensus 194 ~~~g~e~~~~~~~~~~~~~vg~~~~ld~~~~~Kakv~ 230 (274)
+.+++=+.. -..+..++||+.|.++++..+|+.+.
T Consensus 54 ~~v~~g~G~--y~g~~AvAvG~~~~~n~~~~~~~~~s 88 (105)
T 2lme_A 54 VNFTAGVGG--YRSSQALAIGSGYRVNESVALKAGVA 88 (105)
T ss_dssp EEEEEEEEE--ETTEEEEEEEEEEEESSSBCCEEEEE
T ss_pred EEEEEEEec--cCCceEEEEEEEEEeCCCEEEEEEEE
Confidence 444443333 24677788888887777777776554
No 24
>3prn_A Porin; integral membrane protein, pore eyelet mutant, membra protein; HET: C8E; 1.90A {Rhodobacter blasticus} SCOP: f.4.3.1 PDB: 1bh3_A* 1prn_A* 7prn_A* 6prn_A* 5prn_A* 2prn_A* 8prn_A* 1h6s_1
Probab=36.74 E-value=2e+02 Score=24.51 Aligned_cols=128 Identities=13% Similarity=0.039 Sum_probs=78.0
Q ss_pred eEEEEEEcCCceEEEEEeeCCCC--------CeeeEEEEEccCCeEEEEEEEEeccC-CcceeeEEEEeeecC-CcEEEE
Q 023992 104 GKLDLQYLHPHAAIDSSIGLNPT--------PLLELSATIGSKELVLGGEVGFDTAS-ASFIKYTAGIGLNKP-DFSAAL 173 (274)
Q Consensus 104 ~~~~~~y~~~~~~~~~~~~l~~~--------p~~~~s~~~~~~~~~lG~e~~yd~~~-~~~~~~~~~~~Y~~~-~~~~~~ 173 (274)
.-+.++|.-..|.+.++...... ..+...+.+...++.+++-..-|... .....|.++++|.-. .+.+++
T Consensus 131 ~~l~~~ys~Ggfs~~~Sy~~~~~~~~~~~~~d~~~l~a~Yt~g~~~v~aaY~~d~ag~~D~~~~~l~~~y~fG~~~~v~~ 210 (289)
T 3prn_A 131 NGIAVTYSISGVNLYLSYVDPDQTVDSSLVTEEFGIAADWSNDMISLAAAYTTDAGGIVDNDIAFVGAAYKFNDAGTVGL 210 (289)
T ss_dssp EEEEEEEECSSEEEEEEEEETTTTSCGGGSCCEEEEEEEEECSSEEEEEEEEESGGGCTTCCEEEEEEEECCSSSEEEEE
T ss_pred ceEEEEEEecCEEEEEEEEccCCCcccccccceEEEEEEEecCCEEEEEEEeccCCCCCCccEEEEEEEEEcCCCeEEEE
Confidence 45778888888877776654321 12333333334445555442211211 122468888888888 888888
Q ss_pred EEccC-----cCeEEEEEEEEeCCcceEEEEEE-EEeccCccEEEEEEEEeeCCCCeEEEEecCC
Q 023992 174 LLADK-----GQALKASYIHAVDPFTSVAAEMT-HRFSTYQNSFTIGSSHLVDPLTLVKTRLSDG 232 (274)
Q Consensus 174 ~~~~~-----~~~~~~S~~~kvs~~~~~g~e~~-~~~~~~~~~~~vg~~~~ld~~~~~Kakv~s~ 232 (274)
...+. ...+.++.=.++ ..+.+.+-+. .......+.+.||++|.|-..+++++-+...
T Consensus 211 ~Y~d~~d~~~~~~~gl~~~Y~v-~a~tv~a~y~D~~~~~~~t~yGIg~~YDLGgGasl~~gy~~~ 274 (289)
T 3prn_A 211 NWYDNGLSTAGDQVTLYGNYAF-GATTVRAYVSDIDRAGADTAYGIGADYQFAEGVKVSGSVQSG 274 (289)
T ss_dssp EEEECTTSTTCSEEEEEEEEEE-TTEEEEEEEEEECSTTCCCEEEEEEEEEEETTEEEEEEEEEC
T ss_pred EEEccccccCCceEEEEEEeEe-cCeEEEEEEeccccCCCcceEEEEEEecCCCCeEEEEEEEEc
Confidence 87652 234666666667 4345544433 1122466899999999998899999887754
No 25
>3pgu_A Long-chain fatty acid transport protein; outer membrane beta barrel, lipid transport, outer membrane; HET: C8E 2PE OLA; 1.70A {Escherichia coli k-12} SCOP: f.4.3.4 PDB: 3pgs_A* 1t16_A* 1t1l_A* 3dwn_A* 2r4p_A* 3pgr_A* 2r4n_A* 2r4l_A* 2r89_A 2r4o_A* 3pf1_A* 2r8a_A* 2r88_A
Probab=35.54 E-value=2.4e+02 Score=25.11 Aligned_cols=59 Identities=7% Similarity=-0.066 Sum_probs=32.1
Q ss_pred eEEEEEEEEeCCcceEEEEEEEEec-------------cCccEEEEEEEEeeCCCCeEEEEecCCceEEEEEEEEeeCCe
Q 023992 181 ALKASYIHAVDPFTSVAAEMTHRFS-------------TYQNSFTIGSSHLVDPLTLVKTRLSDGGKFAVQFQREWRPKS 247 (274)
Q Consensus 181 ~~~~S~~~kvs~~~~~g~e~~~~~~-------------~~~~~~~vg~~~~ld~~~~~Kakv~s~g~v~~~~~~~l~~~~ 247 (274)
.+.+..-+++++++++-+=+.|... .....+++|+.|+++++ ..|.++|++-..+..
T Consensus 326 ~~~lG~eY~~~~~~~lRaG~~yd~spv~~~~~~~~~P~~d~~~~s~G~~y~~~~~----------~~id~ay~y~~~~~~ 395 (427)
T 3pgu_A 326 RIALGTTYYYDDNWTFRTGIAFDDSPVPAQNRSISIPDQDRFWLSAGTTYAFNKD----------ASVDVGVSYMHGQSV 395 (427)
T ss_dssp EEEEEEEEECSSSEEEEEEEEEEECCCCGGGCBTTBCCSCEEEEEEEEEEESSSS----------EEEEEEEEEEEECCE
T ss_pred EEEEEEEEEcCCCEEEEEEEEEccCCCCcccccccccCCCCEEEEEeEEEEcCCC----------cEEEEEEEEEecCcc
Confidence 3445555566666555554455422 12335677777776432 355666666666555
Q ss_pred EE
Q 023992 248 LV 249 (274)
Q Consensus 248 ~l 249 (274)
++
T Consensus 396 ~~ 397 (427)
T 3pgu_A 396 KI 397 (427)
T ss_dssp EE
T ss_pred eE
Confidence 55
No 26
>2j1n_A Outer membrane protein C; transport protein, beta-barrel, ION transport, osmoporin; HET: D12; 2.0A {Escherichia coli} PDB: 2j4u_P 2zle_D 3nb3_D 4a8d_M 2ixx_A* 2xe1_A* 2xe2_A* 2ixw_A* 2xe5_A* 2xe3_A* 2xg6_A 1osm_A*
Probab=32.25 E-value=2.4e+02 Score=24.06 Aligned_cols=116 Identities=10% Similarity=0.041 Sum_probs=67.7
Q ss_pred eeeEEEEeeecCCcEEEEEEcc-----------------CcCeEEEEEEEEeCCcceEEEEEEEEec----------cCc
Q 023992 156 IKYTAGIGLNKPDFSAALLLAD-----------------KGQALKASYIHAVDPFTSVAAEMTHRFS----------TYQ 208 (274)
Q Consensus 156 ~~~~~~~~Y~~~~~~~~~~~~~-----------------~~~~~~~S~~~kvs~~~~~g~e~~~~~~----------~~~ 208 (274)
..|.+++.|....+.+.+-... ....+.+.--.++. .+.+++....... .+.
T Consensus 178 ~~~~~~~~Y~~g~l~~~a~Y~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Y~~g-~~~l~a~Y~~~~~~~~~~~~~~~~~~ 256 (346)
T 2j1n_A 178 DGVGGSITYDYEGFGIGGAISSSKRTDAQNTAAYIGNGDRAETYTGGLKYDAN-NIYLAAQYTQTYNATRVGSLGWANKA 256 (346)
T ss_dssp CEEEEEEEEEETTEEEEEEEEEEECCTTTSSTTSBCCCSEEEEEEEEEEEEET-TEEEEEEEEEEESCSBCTTSBBCSEE
T ss_pred ceEEEEEEEEeCCEEEEEEEEEecCcccccccccccccccceEEEEEEEEeeC-CEEEEEEEeeeEeccccCccccceEE
Confidence 3578888888777776654321 01122222222443 3566665544321 123
Q ss_pred cEEEEEEEEeeCCCCeEEEE-----ecC------C-c---eEEEEEEEEeeCCeEEEEEEEEecCC---------CCCCC
Q 023992 209 NSFTIGSSHLVDPLTLVKTR-----LSD------G-G---KFAVQFQREWRPKSLVTVSAEYDSKA---------INSAP 264 (274)
Q Consensus 209 ~~~~vg~~~~ld~~~~~Kak-----v~s------~-g---~v~~~~~~~l~~~~~l~ls~~~d~~~---------~~~~~ 264 (274)
..+.++++|++.+...+.+- .+. + . .+.+.+.+.|+++..+-+.......+ .....
T Consensus 257 ~~~~~~a~Y~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~lg~~Y~lSKrt~lY~~~~~~~~~~~~~~~~~~~~~~~ 336 (346)
T 2j1n_A 257 QNFEAVAQYQFDFGLRPSLAYLQSKGKNLGRGYDDEDILKYVDVGATYYFNKNMSTYVDYKINLLDDNQFTRDAGINTDN 336 (346)
T ss_dssp EEEEEEEEECCTTSEEEEEEEEEEEEESCSTTCCSEEEEEEEEEEEEEESSSSEEEEEEEEEECCCCCHHHHHHTCCCSC
T ss_pred EEEEEEEEEEEecCeEEEEEEEEEeccccccccCCcceEEEEEEEEEEEecCCeEEEEEEEEEeccCCcccccCCCCcCc
Confidence 56889999999766655542 211 1 2 67888999999998888777765422 11234
Q ss_pred eeEEEEEE
Q 023992 265 KMGLAIAL 272 (274)
Q Consensus 265 k~G~~l~~ 272 (274)
-+++||..
T Consensus 337 ~~~vGirh 344 (346)
T 2j1n_A 337 IVALGLVY 344 (346)
T ss_dssp EEEEEEEE
T ss_pred EEEEEEEE
Confidence 67777754
No 27
>2wjr_A Probable N-acetylneuraminic acid outer membrane C protein NANC; cell membrane, ION transport, transmembrane, porin, membrane transport; HET: EPE; 1.80A {Escherichia coli} PDB: 2wjq_A*
Probab=31.17 E-value=2.1e+02 Score=23.08 Aligned_cols=19 Identities=5% Similarity=-0.256 Sum_probs=10.9
Q ss_pred EEEEEEeCCcceEEEEEEE
Q 023992 184 ASYIHAVDPFTSVAAEMTH 202 (274)
Q Consensus 184 ~S~~~kvs~~~~~g~e~~~ 202 (274)
+-+.|+....+=+.+|+.+
T Consensus 19 l~~~h~f~nG~g~s~E~k~ 37 (214)
T 2wjr_A 19 LKVSEGWQNGWWASMESNT 37 (214)
T ss_dssp EEEEEECTTSEEEEEEEEE
T ss_pred EEEEEEccCCceEEEEEEE
Confidence 4445666665555666654
No 28
>3bry_A TBUX; beta barrel, outer membrane protein, transport protein; HET: C8E; 3.20A {Ralstonia pickettii}
Probab=28.09 E-value=3.1e+02 Score=24.13 Aligned_cols=28 Identities=14% Similarity=0.166 Sum_probs=24.0
Q ss_pred CCceEEEEEEEEeeCCeEEEEEEEEecC
Q 023992 231 DGGKFAVQFQREWRPKSLVTVSAEYDSK 258 (274)
Q Consensus 231 s~g~v~~~~~~~l~~~~~l~ls~~~d~~ 258 (274)
+...+++..++++++.+++..+...|..
T Consensus 334 d~~~~~lG~ey~~~~~~~lRaG~~yd~s 361 (441)
T 3bry_A 334 DISVFGIGAEYRYNAKWTFRGGFHYAQE 361 (441)
T ss_dssp CEEEEEEEEEEEEETTEEEEEEEEEEEC
T ss_pred eceEEEEEEEEEcCCCeEEEEeeecccC
Confidence 3467889999999999999999999884
No 29
>2jmf_B Neurogenic locus notch protein; WW domain, solution, complex, ligase/signaling protein complex; NMR {Drosophila melanogaster}
Probab=23.55 E-value=12 Score=19.00 Aligned_cols=14 Identities=21% Similarity=0.415 Sum_probs=10.3
Q ss_pred CCCCCCCCCccccc
Q 023992 2 GSNPAPFSDVGKRA 15 (274)
Q Consensus 2 ~~~p~~f~dl~K~a 15 (274)
++.||+|+|.-|..
T Consensus 10 akqppsyedcik~~ 23 (26)
T 2jmf_B 10 AKQPPSYEDCIKXX 23 (26)
T ss_pred CCCCCCHHHHHHhh
Confidence 45799999876653
No 30
>3bs0_A TODX; beta barrel, outer membrane protein, transport protein; HET: C8E; 2.60A {Pseudomonas putida} PDB: 3brz_A*
Probab=23.30 E-value=3.8e+02 Score=23.57 Aligned_cols=28 Identities=7% Similarity=0.064 Sum_probs=23.4
Q ss_pred CCceEEEEEEEEeeCCeEEEEEEEEecC
Q 023992 231 DGGKFAVQFQREWRPKSLVTVSAEYDSK 258 (274)
Q Consensus 231 s~g~v~~~~~~~l~~~~~l~ls~~~d~~ 258 (274)
+.+++++..++++++.+++..+...|..
T Consensus 332 d~~~~~lG~ey~~~~~~~lRaG~~yd~s 359 (439)
T 3bs0_A 332 DITVASIGTAYKYNNDLTLRAGYSYAQQ 359 (439)
T ss_dssp CEEEEEEEEEEECSSSEEEEEEEEECC-
T ss_pred eeeEEEEEEEEEcCCCEEEEEeeEcccC
Confidence 3467889999999999999999998874
No 31
>3aeh_A Hemoglobin-binding protease HBP autotransporter; beta-barrel, auto-proteolytic, reaction intermediate, mutant membrane, cell outer membrane; 2.00A {Escherichia coli}
Probab=22.57 E-value=2.6e+02 Score=23.36 Aligned_cols=20 Identities=10% Similarity=0.099 Sum_probs=10.3
Q ss_pred EEEEEEEEeeCCCCeEEEEe
Q 023992 210 SFTIGSSHLVDPLTLVKTRL 229 (274)
Q Consensus 210 ~~~vg~~~~ld~~~~~Kakv 229 (274)
.+.+|..+++.++..+-+.+
T Consensus 265 ~~g~G~~~~l~~~~~l~~~~ 284 (308)
T 3aeh_A 265 LYGVGLNARFGDNTRLGLEV 284 (308)
T ss_dssp EEEEEEEEEETTTEEEEEEE
T ss_pred EEEEEEEEEECCCEEEEEEE
Confidence 45555555555554444443
Done!