Query 023993
Match_columns 274
No_of_seqs 202 out of 1500
Neff 5.9
Searched_HMMs 29240
Date Mon Mar 25 16:20:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023993.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023993hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4gmk_A Ribose-5-phosphate isom 100.0 6.4E-72 2.2E-76 499.6 23.2 225 41-273 2-226 (228)
2 3l7o_A Ribose-5-phosphate isom 100.0 7.8E-71 2.7E-75 492.9 20.9 222 44-274 2-223 (225)
3 3hhe_A Ribose-5-phosphate isom 100.0 3.4E-70 1.1E-74 495.8 24.7 232 37-274 18-252 (255)
4 2pjm_A Ribose-5-phosphate isom 100.0 7.1E-70 2.4E-74 487.2 24.4 224 41-274 1-226 (226)
5 3ixq_A Ribose-5-phosphate isom 100.0 9E-70 3.1E-74 485.4 24.8 224 41-274 1-226 (226)
6 3uw1_A Ribose-5-phosphate isom 100.0 2.5E-69 8.7E-74 486.5 21.0 222 40-273 8-235 (239)
7 1lk5_A D-ribose-5-phosphate is 100.0 1E-67 3.4E-72 474.3 24.2 228 41-274 1-229 (229)
8 2f8m_A Ribose 5-phosphate isom 100.0 3.7E-67 1.3E-71 474.3 22.6 228 43-272 9-239 (244)
9 3kwm_A Ribose-5-phosphate isom 100.0 1.2E-66 3.9E-71 465.7 22.0 218 38-272 4-223 (224)
10 1xtz_A Ribose-5-phosphate isom 100.0 2.8E-65 9.5E-70 466.7 21.1 231 36-271 11-254 (264)
11 1m0s_A Ribose-5-phosphate isom 100.0 2.4E-64 8.3E-69 449.7 22.6 216 41-272 1-218 (219)
12 1uj6_A Ribose 5-phosphate isom 100.0 2.4E-64 8E-69 451.9 22.0 221 42-271 4-225 (227)
13 1o8b_A Ribose 5-phosphate isom 100.0 8.7E-65 3E-69 452.6 13.6 217 41-274 1-219 (219)
14 1vb5_A Translation initiation 99.3 3.1E-11 1.1E-15 110.4 12.4 133 44-184 93-239 (276)
15 3ecs_A Translation initiation 98.0 4.2E-05 1.4E-09 71.1 11.3 130 46-181 107-250 (315)
16 3a11_A Translation initiation 97.9 0.00012 4.1E-09 68.6 13.1 133 46-183 127-271 (338)
17 2w48_A Sorbitol operon regulat 97.8 3.2E-05 1.1E-09 70.9 7.9 85 44-131 89-216 (315)
18 1poi_B Glutaconate coenzyme A- 97.7 7.1E-05 2.4E-09 67.7 7.8 113 46-170 7-160 (260)
19 2o0m_A Transcriptional regulat 97.7 2.7E-05 9.4E-10 72.4 4.4 65 45-111 122-203 (345)
20 1t5o_A EIF2BD, translation ini 97.6 0.00039 1.3E-08 65.5 11.3 130 46-183 132-285 (351)
21 2yvk_A Methylthioribose-1-phos 97.5 0.00035 1.2E-08 66.4 10.1 134 45-183 158-314 (374)
22 1t9k_A Probable methylthioribo 97.5 0.00047 1.6E-08 64.8 10.1 132 45-183 133-289 (347)
23 2a0u_A Initiation factor 2B; S 97.5 0.00031 1.1E-08 66.9 8.8 129 47-183 156-318 (383)
24 3d3u_A 4-hydroxybutyrate COA-t 97.3 0.00061 2.1E-08 65.6 9.1 55 42-102 191-245 (439)
25 3rrl_A Succinyl-COA:3-ketoacid 97.3 0.00079 2.7E-08 60.0 8.9 112 50-169 10-198 (235)
26 3rrl_B Succinyl-COA:3-ketoacid 97.3 0.00011 3.9E-09 64.3 3.2 108 47-166 2-144 (207)
27 1k6d_A Acetate COA-transferase 97.2 0.0013 4.4E-08 57.7 9.4 112 51-169 8-195 (220)
28 3cdk_A Succinyl-COA:3-ketoacid 97.1 0.0011 3.8E-08 59.1 7.7 107 51-163 11-194 (241)
29 3d3u_A 4-hydroxybutyrate COA-t 96.8 0.002 6.9E-08 61.9 7.2 114 47-165 10-160 (439)
30 3qli_A Coenzyme A transferase; 96.7 0.003 1E-07 61.3 7.5 115 47-163 25-182 (455)
31 3gk7_A 4-hydroxybutyrate COA-t 96.2 0.0093 3.2E-07 57.8 7.3 112 47-163 10-157 (448)
32 1poi_A Glutaconate coenzyme A- 96.1 0.024 8.1E-07 52.3 9.7 47 119-169 171-217 (317)
33 1xr4_A Putative citrate lyase 96.1 0.016 5.5E-07 56.9 8.7 112 50-163 48-206 (509)
34 4eu9_A Succinyl-COA:acetate co 96.0 0.027 9.1E-07 55.3 9.9 116 47-164 13-171 (514)
35 3nze_A Putative transcriptiona 95.9 0.0092 3.2E-07 53.6 5.6 49 43-95 35-87 (267)
36 2oas_A ATOA, 4-hydroxybutyrate 95.9 0.024 8.2E-07 54.5 8.9 108 51-163 9-152 (436)
37 3kv1_A Transcriptional repress 95.9 0.0077 2.6E-07 54.1 5.0 40 42-81 33-76 (267)
38 3eh7_A 4-hydroxybutyrate COA-t 95.9 0.029 9.9E-07 54.0 9.2 113 47-163 14-161 (434)
39 2g39_A Acetyl-COA hydrolase; c 95.7 0.027 9.1E-07 55.2 8.4 113 48-163 15-166 (497)
40 2nvv_A Acetyl-COA hydrolase/tr 95.5 0.018 6.3E-07 56.5 6.3 112 50-163 7-161 (506)
41 2ahu_A Putative enzyme YDIF; C 95.4 0.01 3.4E-07 58.6 4.1 50 48-97 15-69 (531)
42 3efb_A Probable SOR-operon reg 95.4 0.016 5.3E-07 52.0 5.1 41 42-82 38-82 (266)
43 1xr4_A Putative citrate lyase 95.2 0.15 5.2E-06 49.9 12.0 120 41-164 244-413 (509)
44 2hj0_A Putative citrate lyase, 94.6 0.21 7.3E-06 49.1 11.2 110 50-163 51-209 (519)
45 1w2w_B 5-methylthioribose-1-ph 94.4 0.037 1.3E-06 47.6 4.6 82 100-183 22-113 (191)
46 3k6m_A Succinyl-COA:3-ketoacid 94.4 0.085 2.9E-06 51.5 7.6 111 44-165 260-406 (481)
47 2hj0_A Putative citrate lyase, 94.2 0.31 1.1E-05 47.9 11.2 42 41-82 247-294 (519)
48 2ahu_A Putative enzyme YDIF; C 93.4 0.22 7.4E-06 49.1 8.5 107 46-163 287-418 (531)
49 2gnp_A Transcriptional regulat 93.2 0.11 3.9E-06 46.3 5.7 46 46-95 39-88 (266)
50 3gk7_A 4-hydroxybutyrate COA-t 92.1 0.87 3E-05 44.0 10.6 42 41-82 189-230 (448)
51 2okg_A Central glycolytic gene 92.0 0.12 4.2E-06 45.7 4.2 46 47-95 39-88 (255)
52 2r5f_A Transcriptional regulat 90.6 0.28 9.5E-06 43.6 5.0 47 46-95 39-91 (264)
53 2oas_A ATOA, 4-hydroxybutyrate 89.1 0.76 2.6E-05 44.0 7.1 42 41-82 184-225 (436)
54 3k6m_A Succinyl-COA:3-ketoacid 84.8 0.9 3.1E-05 44.2 5.0 43 51-97 7-52 (481)
55 2jsx_A Protein NAPD; TAT, proo 84.8 1.5 5.2E-05 33.4 5.3 71 176-259 9-80 (95)
56 3qli_A Coenzyme A transferase; 84.0 1.4 4.9E-05 42.6 5.9 48 42-95 216-263 (455)
57 1stz_A Heat-inducible transcri 82.1 0.15 5.1E-06 47.3 -1.7 47 45-104 100-147 (338)
58 2cvi_A 75AA long hypothetical 79.6 1.5 5.1E-05 31.6 3.3 64 177-252 6-70 (83)
59 3eh7_A 4-hydroxybutyrate COA-t 79.1 2.5 8.5E-05 40.5 5.6 42 41-82 193-234 (434)
60 1fs5_A Glucosamine-6-phosphate 78.6 1.6 5.5E-05 38.3 3.9 34 61-94 34-69 (266)
61 2bkx_A Glucosamine-6-phosphate 78.0 1.8 6.2E-05 37.2 4.0 47 48-94 14-64 (242)
62 2ri0_A Glucosamine-6-phosphate 74.5 3.4 0.00012 35.3 4.8 46 48-95 15-61 (234)
63 1ne7_A Glucosamine-6-phosphate 74.2 3.2 0.00011 37.1 4.7 34 62-95 35-70 (289)
64 2cyy_A Putative HTH-type trans 73.9 1.6 5.4E-05 34.8 2.3 83 156-253 53-135 (151)
65 2cg4_A Regulatory protein ASNC 73.8 4.6 0.00016 32.0 5.1 84 156-254 54-139 (152)
66 2zbc_A 83AA long hypothetical 73.5 2.4 8.2E-05 30.0 3.0 64 177-252 6-70 (83)
67 3fwz_A Inner membrane protein 71.0 26 0.00088 27.0 8.8 49 61-114 8-56 (140)
68 2dbb_A Putative HTH-type trans 70.5 3.2 0.00011 32.9 3.4 83 156-253 55-139 (151)
69 2e1c_A Putative HTH-type trans 69.9 1.7 5.8E-05 35.9 1.6 80 158-252 75-154 (171)
70 2p5v_A Transcriptional regulat 62.4 9.1 0.00031 30.6 4.6 82 156-252 56-140 (162)
71 2djw_A Probable transcriptiona 61.5 4.8 0.00016 29.3 2.5 64 177-252 6-70 (92)
72 2ia0_A Putative HTH-type trans 60.8 17 0.00058 29.7 6.1 80 156-252 63-151 (171)
73 1i1g_A Transcriptional regulat 60.4 8.6 0.00029 29.7 4.0 64 177-252 68-132 (141)
74 1y89_A DEVB protein; structura 59.2 9.2 0.00032 33.0 4.4 38 45-82 12-51 (238)
75 3j20_B 30S ribosomal protein S 58.1 74 0.0025 27.2 9.8 86 43-128 47-158 (202)
76 3c85_A Putative glutathione-re 56.0 73 0.0025 25.2 9.1 50 60-113 39-88 (183)
77 3njr_A Precorrin-6Y methylase; 55.9 60 0.0021 26.5 8.8 85 10-105 6-94 (204)
78 3ix7_A Uncharacterized protein 50.8 31 0.001 27.7 5.9 66 45-116 52-124 (134)
79 1t57_A Conserved protein MTH16 49.6 16 0.00055 31.6 4.1 93 11-114 7-111 (206)
80 2pn6_A ST1022, 150AA long hypo 49.5 7.5 0.00026 30.6 2.0 58 183-252 75-133 (150)
81 1ucr_A Protein DSVD; dissimila 49.1 1 3.6E-05 33.3 -2.9 29 47-75 35-64 (78)
82 3u5c_A 40S ribosomal protein S 48.3 1.2E+02 0.0042 26.8 9.9 86 43-128 52-164 (252)
83 2nzc_A Hypothetical protein; s 47.0 9.4 0.00032 28.7 2.0 62 185-250 16-77 (86)
84 3llv_A Exopolyphosphatase-rela 45.0 96 0.0033 23.3 9.0 49 61-114 7-55 (141)
85 1rwu_A Hypothetical UPF0250 pr 44.7 59 0.002 25.1 6.4 81 162-249 23-106 (109)
86 1vi6_A 30S ribosomal protein S 44.4 1.5E+02 0.0052 25.4 9.9 86 43-128 51-162 (208)
87 1tx2_A DHPS, dihydropteroate s 44.0 53 0.0018 29.7 7.0 62 47-112 62-139 (297)
88 3l9w_A Glutathione-regulated p 43.9 88 0.003 29.1 8.8 63 61-128 5-77 (413)
89 2g39_A Acetyl-COA hydrolase; c 43.9 22 0.00076 34.5 4.7 116 41-164 227-400 (497)
90 3p9z_A Uroporphyrinogen III co 43.6 41 0.0014 28.4 5.9 49 59-113 160-208 (229)
91 3zzm_A Bifunctional purine bio 42.6 43 0.0015 32.9 6.4 78 36-113 402-491 (523)
92 3iz6_A 40S ribosomal protein S 41.1 2.1E+02 0.0072 26.1 10.4 85 44-128 58-169 (305)
93 2w25_A Probable transcriptiona 40.6 6.2 0.00021 31.2 0.2 81 156-251 53-134 (150)
94 4eu9_A Succinyl-COA:acetate co 40.2 49 0.0017 32.0 6.5 41 42-82 234-284 (514)
95 4es6_A Uroporphyrinogen-III sy 39.7 33 0.0011 29.2 4.7 53 60-114 185-237 (254)
96 2nvv_A Acetyl-COA hydrolase/tr 38.6 26 0.0009 34.0 4.3 117 41-164 222-396 (506)
97 2ko1_A CTR148A, GTP pyrophosph 38.5 42 0.0014 23.2 4.4 72 175-252 4-76 (88)
98 4gek_A TRNA (CMO5U34)-methyltr 38.4 35 0.0012 29.5 4.7 58 43-105 53-113 (261)
99 3css_A 6-phosphogluconolactona 35.4 21 0.00072 31.4 2.8 21 61-81 38-58 (267)
100 3dfz_A SIRC, precorrin-2 dehyd 35.3 1.3E+02 0.0045 25.7 7.9 50 58-112 29-80 (223)
101 1jr2_A Uroporphyrinogen-III sy 35.1 35 0.0012 29.7 4.2 53 59-112 209-261 (286)
102 2cfx_A HTH-type transcriptiona 34.8 52 0.0018 25.5 4.8 74 157-248 52-125 (144)
103 1uh6_A Ubiquitin-like 5; beta- 34.7 37 0.0013 25.8 3.8 45 9-53 8-61 (100)
104 3mw8_A Uroporphyrinogen-III sy 33.8 37 0.0013 28.6 4.0 54 60-114 172-225 (240)
105 1vl1_A 6PGL, 6-phosphogluconol 33.7 12 0.00042 32.4 1.0 22 60-81 45-66 (232)
106 2xzm_B RPS0E; ribosome, transl 33.6 2.4E+02 0.0083 24.6 9.6 85 44-128 49-161 (241)
107 1vp8_A Hypothetical protein AF 33.5 94 0.0032 26.7 6.4 68 41-115 26-105 (201)
108 3i8o_A KH domain-containing pr 30.9 58 0.002 26.4 4.5 28 90-117 106-133 (142)
109 3phh_A Shikimate dehydrogenase 30.5 74 0.0025 28.1 5.6 63 60-127 118-180 (269)
110 1zcz_A Bifunctional purine bio 29.5 32 0.0011 33.3 3.1 79 35-113 342-432 (464)
111 2dph_A Formaldehyde dismutase; 28.8 2.2E+02 0.0077 25.6 8.8 68 57-128 182-263 (398)
112 1kol_A Formaldehyde dehydrogen 28.8 2.3E+02 0.008 25.3 8.9 68 57-128 182-263 (398)
113 4df3_A Fibrillarin-like rRNA/T 28.4 54 0.0018 28.4 4.2 53 47-105 61-119 (233)
114 4ehi_A Bifunctional purine bio 27.5 36 0.0012 33.5 3.1 78 36-113 410-502 (534)
115 3l4b_C TRKA K+ channel protien 27.5 2.3E+02 0.008 22.9 8.0 47 63-114 3-50 (218)
116 1aj0_A DHPS, dihydropteroate s 25.6 78 0.0027 28.2 4.9 61 48-112 38-114 (282)
117 2g1u_A Hypothetical protein TM 25.0 88 0.003 24.1 4.6 48 61-113 20-68 (155)
118 3tqh_A Quinone oxidoreductase; 25.0 2.4E+02 0.0083 24.4 8.0 72 51-128 141-224 (321)
119 3mvn_A UDP-N-acetylmuramate:L- 23.8 57 0.002 26.0 3.3 35 47-82 125-160 (163)
120 3re1_A Uroporphyrinogen-III sy 23.6 39 0.0013 29.2 2.4 55 62-121 195-252 (269)
121 3s5o_A 4-hydroxy-2-oxoglutarat 23.1 1E+02 0.0036 27.4 5.2 71 44-115 66-149 (307)
122 2yci_X 5-methyltetrahydrofolat 23.0 1.3E+02 0.0043 26.6 5.7 61 48-112 34-104 (271)
123 3oj0_A Glutr, glutamyl-tRNA re 22.7 1.1E+02 0.0036 23.3 4.6 63 61-128 21-89 (144)
124 3hn6_A Glucosamine-6-phosphate 22.5 69 0.0024 28.6 3.9 32 62-93 56-89 (289)
125 3hem_A Cyclopropane-fatty-acyl 21.9 2.6E+02 0.0089 23.7 7.5 58 40-105 50-112 (302)
126 2hmt_A YUAA protein; RCK, KTN, 21.9 2.3E+02 0.008 20.5 7.1 47 61-112 7-53 (144)
127 1lss_A TRK system potassium up 21.5 2.4E+02 0.0081 20.4 7.4 46 63-113 7-53 (140)
128 3fpc_A NADP-dependent alcohol 21.4 3.7E+02 0.013 23.5 8.6 73 51-127 155-243 (352)
129 2vp8_A Dihydropteroate synthas 21.2 1.4E+02 0.0048 27.2 5.7 62 48-112 65-141 (318)
130 3mw8_A Uroporphyrinogen-III sy 21.0 1.4E+02 0.0048 24.8 5.4 51 58-113 48-98 (240)
131 1id1_A Putative potassium chan 20.9 2.8E+02 0.0095 21.0 6.9 49 60-113 3-55 (153)
132 3upu_A ATP-dependent DNA helic 20.9 1.9E+02 0.0065 26.7 6.8 57 51-111 34-98 (459)
133 2ywr_A Phosphoribosylglycinami 20.5 1.7E+02 0.0058 24.7 5.8 49 63-115 4-58 (216)
134 3d8t_A Uroporphyrinogen-III sy 20.1 64 0.0022 28.0 3.1 53 60-112 208-262 (286)
135 3av3_A Phosphoribosylglycinami 20.1 1.5E+02 0.0053 24.9 5.4 49 63-115 8-60 (212)
No 1
>4gmk_A Ribose-5-phosphate isomerase A; D-ribose-5-phosphate isomerase family, ribose 5-phosphate isomerisation; 1.72A {Lactobacillus salivarius}
Probab=100.00 E-value=6.4e-72 Score=499.58 Aligned_cols=225 Identities=43% Similarity=0.677 Sum_probs=216.4
Q ss_pred CChHHHHHHHHHHHHhcCCCCCEEEECcChHHHHHHHHHhchhhcCCCCCeEEECCcHHHHHHHHhCCCcEEEcCCCCcc
Q 023993 41 LTQDDLKKLAADKAVDYVKSGMALGLGTGSTAAFVVDRIGQLLKTGELRDIVGIPTSKRTEEQAKSLNIPLTTLDDHPSL 120 (274)
Q Consensus 41 ~~~~~~K~~iA~~A~~~I~dg~vIgLGsGSTv~~l~~~L~~~~~~~~l~~itvVT~S~~ta~~l~~~gi~vi~l~~~~~i 120 (274)
.+|+++|+++|++|++||+|||+||||||||+.+|+++|+++++++++ ++++||+|.+++.+++++||++..++++.++
T Consensus 2 ~~qd~~K~~aa~~A~~~V~~gmvvGlGTGSTv~~~i~~L~~~~~~~~l-~i~~V~tS~~t~~~a~~~Gi~l~~l~~~~~i 80 (228)
T 4gmk_A 2 PNQDELKQLVGTKAVEWIKDGMIVGLGTGSTVKYMVDALGKRVNEEGL-DIVGVTTSIRTAEQAKSLGIVIKDIDEVDHI 80 (228)
T ss_dssp CHHHHHHHHHHHHHGGGCCTTCEEEECCSHHHHHHHHHHHHHHHHHCC-CCEEEESSHHHHHHHHHTTCCBCCGGGSSCE
T ss_pred cCHHHHHHHHHHHHHHhCCCCCEEEECchHHHHHHHHHHHHHHhhcCC-cEEEEeCcHHHHHHHHHcCCceeChHHCCcc
Confidence 368999999999999999999999999999999999999998887777 7999999999999999999999999999999
Q ss_pred cEEEEccCcccCCCCcccCcchhHHHHHHHHHhcCcEEEEEcCCcccccCCCCcccccEEEecccHHHHHHHHHHhHhhc
Q 023993 121 DLAIDGADEVDPELNLVKGRGGALLREKMVEAASKSFVVVADESKLVSGLGGSKLAMPVEVVQFCWKFNLVRLQDLFREL 200 (274)
Q Consensus 121 D~afdGaD~Vd~~~~~ikg~gga~l~EKila~~S~~~IvLaD~sK~~~~Lg~~~~plPvEV~p~a~~~v~~~l~~l~~~~ 200 (274)
|+|||||||||+++++|||||||++|||+++++|+++|+|+|+||++++|| +|||||||+||+|.+|.++|+++
T Consensus 81 D~~iDGADEvd~~l~lIKGGGgal~rEKivA~~a~~fI~IaD~sK~v~~LG--~fplPVEVip~a~~~v~~~l~~l---- 154 (228)
T 4gmk_A 81 DLTIDGADEISSDFQGIKGGGAALLYEKIVATKSNKNMWIVDESKMVDDLG--QFPLPVEVIPYGSGTVFKRFEEK---- 154 (228)
T ss_dssp EEEEECCSEECTTSCEECCTTSCHHHHHHHHHHEEEEEEEEEGGGBCSSSC--SSCEEEEECSTTHHHHHHHHHHT----
T ss_pred ceEeccHHHhhhchhhhhcchHHHHHHHHHHHhhhheEEEeccccccCccC--CeeEEEEEehhhHHHHHHHHHHc----
Confidence 999999999999999999999999999999999999999999999999997 69999999999999999999997
Q ss_pred CCeeEEeecCCCCceEeCCCCEEEEeeCCCCCCChHHHHHHhcCCCcEEeeecccccccEEEEEcCCCeEEec
Q 023993 201 GCEAKLREGENGKPYITDNFNYIIDLYFETPIKDGVSAGTEIGKLEGVVEHGLFLDMATAVIIAGKTGVEVKS 273 (274)
Q Consensus 201 g~~~~lR~~~~~gp~vTdnGN~IlD~~f~~~i~d~~~l~~~l~~ipGVVe~GlF~~~a~~viv~~~~gv~~~~ 273 (274)
|+++.+|+..+++|++|||||||+||+|.. +.||.+++++|++||||||||||.++|+.+++|+++|+++++
T Consensus 155 G~~~~~R~~~~g~~~vTDnGN~IlD~~~~~-i~dp~~l~~~L~~i~GVVe~GLF~~~a~~vivg~~dGv~~l~ 226 (228)
T 4gmk_A 155 GLNPEFRKNEDGSLLHTDSDNYIIDLHLGK-IENPKELGDYLINQVGVVEHGLFLDIVNTVIVGRQDGPEVLE 226 (228)
T ss_dssp TCCEEECBCTTSSBCCCTTSCEEEEECCSC-CSCHHHHHHHHHTSTTEEEESEECSCCCEEEEEETTEEEEEE
T ss_pred CCceeecccCCCCeEEecCCCEEEEecCCC-CCCHHHHHHHHhCCCCEEeeeeecCCCCEEEEEeCCCcEEEe
Confidence 999999987666899999999999999985 999999999999999999999999999999999999999886
No 2
>3l7o_A Ribose-5-phosphate isomerase A; RPIA; 1.70A {Streptococcus mutans}
Probab=100.00 E-value=7.8e-71 Score=492.94 Aligned_cols=222 Identities=44% Similarity=0.731 Sum_probs=208.8
Q ss_pred HHHHHHHHHHHHhcCCCCCEEEECcChHHHHHHHHHhchhhcCCCCCeEEECCcHHHHHHHHhCCCcEEEcCCCCcccEE
Q 023993 44 DDLKKLAADKAVDYVKSGMALGLGTGSTAAFVVDRIGQLLKTGELRDIVGIPTSKRTEEQAKSLNIPLTTLDDHPSLDLA 123 (274)
Q Consensus 44 ~~~K~~iA~~A~~~I~dg~vIgLGsGSTv~~l~~~L~~~~~~~~l~~itvVT~S~~ta~~l~~~gi~vi~l~~~~~iD~a 123 (274)
+++|++||++|++||+|||+||||||||+.+++++|+++++++++ ++++||||.+++.+|.++|++++.++...++|+|
T Consensus 2 ~~~K~~iA~~A~~~V~dg~vIgLGsGST~~~~i~~L~~~~~~~~~-~i~~VttS~~t~~~l~~~Gi~l~~l~~~~~iD~a 80 (225)
T 3l7o_A 2 EELKKIAGVRAAQYVEDGMIVGLGTGSTAYYFVEEVGRRVQEEGL-QVIGVTTSSRTTAQAQALGIPLKSIDEVDSVDVT 80 (225)
T ss_dssp CHHHHHHHHHHHTTCCTTCEEEECCSTTHHHHHHHHHHHHHHHCC-CCEEEESSHHHHHHHHHHTCCBCCGGGSSCEEEE
T ss_pred hHHHHHHHHHHHHhCCCCCEEEECCcHHHHHHHHHHHHhhhhcCC-CEEEEcCCHHHHHHHhccCceEEecCcccccCEE
Confidence 588999999999999999999999999999999999998776665 7999999999999999999999999998999999
Q ss_pred EEccCcccCCCCcccCcchhHHHHHHHHHhcCcEEEEEcCCcccccCCCCcccccEEEecccHHHHHHHHHHhHhhcCCe
Q 023993 124 IDGADEVDPELNLVKGRGGALLREKMVEAASKSFVVVADESKLVSGLGGSKLAMPVEVVQFCWKFNLVRLQDLFRELGCE 203 (274)
Q Consensus 124 fdGaD~Vd~~~~~ikg~gga~l~EKila~~S~~~IvLaD~sK~~~~Lg~~~~plPvEV~p~a~~~v~~~l~~l~~~~g~~ 203 (274)
|||||+||++++++||+|+|++|||+++++|+++|+|+|+||++++|| +|||||||+||+|.+|.++|+++ |++
T Consensus 81 ~dGADevd~~~~liKGgG~al~rEKiva~~A~~~iviaD~sK~~~~Lg--~~plPvEV~p~a~~~v~~~l~~l----G~~ 154 (225)
T 3l7o_A 81 VDGADEVDPNFNGIKGGGGALLMEKIVGTLTKDYIWVVDESKMVDTLG--AFRLPVEVVQYGAERLFREFEKK----GYK 154 (225)
T ss_dssp EECCSEECTTSCEECCTTSCHHHHHHHHHTEEEEEEEEEGGGBCSSSC--SSCEEEEECSTTHHHHHHHHHHT----TCC
T ss_pred EEcCCccCcccCeecCchhhhHHHHHHHHhCCeEEEEEecccchhhcC--CCCEEEEEehhHHHHHHHHHHHc----CCc
Confidence 999999999999999999999999999999999999999999999997 59999999999999999999997 999
Q ss_pred eEEeecCCCCceEeCCCCEEEEeeCCCCCCChHHHHHHhcCCCcEEeeecccccccEEEEEcCCCeEEecC
Q 023993 204 AKLREGENGKPYITDNFNYIIDLYFETPIKDGVSAGTEIGKLEGVVEHGLFLDMATAVIIAGKTGVEVKSK 274 (274)
Q Consensus 204 ~~lR~~~~~gp~vTdnGN~IlD~~f~~~i~d~~~l~~~l~~ipGVVe~GlF~~~a~~viv~~~~gv~~~~~ 274 (274)
+.+|+++ ++||+|||||||+||+|+. +.||.+++++|++||||||||||.++|+.+++|+++|+++++|
T Consensus 155 ~~lR~~~-~~p~vTDnGn~IlD~~f~~-i~~p~~l~~~l~~i~GVVe~GlF~~~a~~v~v~~~~g~~~~~~ 223 (225)
T 3l7o_A 155 PSFREYD-GVRFVTDMKNFIIDLDLGS-IPDPIAFGNMLDHQVGVVEHGLFNGMVNRVIVAGKDGVRILEA 223 (225)
T ss_dssp EEECEET-TEECCCTTSCEEEEECCSC-CSCHHHHHHHHHTSTTEEEESEECSCCSEEEEET---TEEEEC
T ss_pred eEEEEcC-CCcEEcCCCCEEEEecCCC-CCCHHHHHHHHhcCCCeeeeeeeccCCCEEEEEcCCceEEecc
Confidence 9999974 4899999999999999975 9999999999999999999999999999999999999988764
No 3
>3hhe_A Ribose-5-phosphate isomerase A; niaid, ssgcid, decode, SBRI, UW, STRU genomics, seattle structural genomics center for infectious; HET: 5RP; 2.30A {Bartonella henselae}
Probab=100.00 E-value=3.4e-70 Score=495.80 Aligned_cols=232 Identities=37% Similarity=0.615 Sum_probs=214.0
Q ss_pred cccCCChHHHHHHHHHHHHhcCCCCCEEEECcChHHHHHHHHHhchhhcCCCCCeEEECCcHHHHHHHHhCCCcEEEcCC
Q 023993 37 AVPALTQDDLKKLAADKAVDYVKSGMALGLGTGSTAAFVVDRIGQLLKTGELRDIVGIPTSKRTEEQAKSLNIPLTTLDD 116 (274)
Q Consensus 37 ~~~~~~~~~~K~~iA~~A~~~I~dg~vIgLGsGSTv~~l~~~L~~~~~~~~l~~itvVT~S~~ta~~l~~~gi~vi~l~~ 116 (274)
|...|+++++|++||++|+++|++||+||||||||+.+++++|+++.++| + ++++||||.+++.+|.++||+++.+++
T Consensus 18 ~~~~m~~~e~K~~iA~~A~~~V~dg~vIgLGsGST~~~~i~~L~~~~~~g-l-~ItvVttS~~ta~~l~~~GI~l~~l~~ 95 (255)
T 3hhe_A 18 GPGSMNVQQLKKMAALKALEFVEDDMRLGIGSGSTVNEFIPLLGERVANG-L-RVTCVATSQYSEQLCHKFGVPISTLEK 95 (255)
T ss_dssp -----CHHHHHHHHHHHHHTTCCTTEEEEECCSHHHHHHHHHHHHHHHTT-C-CEEEEESSHHHHHHHHHTTCCBCCTTT
T ss_pred CCCCCCHHHHHHHHHHHHHHhCCCCCEEEECCcHHHHHHHHHHHHhhccC-C-cEEEEcCCHHHHHHHHHcCCcEEeccc
Confidence 34457899999999999999999999999999999999999999876543 4 799999999999999999999999999
Q ss_pred CCcccEEEEccCcccCCCCcccCcchhHHHHHHHHHhcCcEEEEEcCCcccccCCCCcccccEEEecccHHHHHHHHHHh
Q 023993 117 HPSLDLAIDGADEVDPELNLVKGRGGALLREKMVEAASKSFVVVADESKLVSGLGGSKLAMPVEVVQFCWKFNLVRLQDL 196 (274)
Q Consensus 117 ~~~iD~afdGaD~Vd~~~~~ikg~gga~l~EKila~~S~~~IvLaD~sK~~~~Lg~~~~plPvEV~p~a~~~v~~~l~~l 196 (274)
..++|+||||||+||++++++||+|+|++|||+++++|+++|+|+|+||++++|| +|||||||+||+|.+|.++|+++
T Consensus 96 ~~~iD~afdGADeVD~~~~lIKGgG~al~rEKiva~~A~~~ivIaD~SK~v~~LG--~~plPVEViP~a~~~v~~~l~~~ 173 (255)
T 3hhe_A 96 IPELDLDIDGADEIGPEMTLIKGGGGALLHEKIVASASRAMFVIADETKMVKTLG--AFALPIEVNPFGIHATRIAIEKA 173 (255)
T ss_dssp CCSBSEEEECCSEECGGGCEECCTTSCHHHHHHHHHTBSCEEEEEEGGGBCSSSC--SSCEEEEECSTTHHHHHHHHHHH
T ss_pred ccccCEEEECCCccccccCeeeCchhhhHHHHHHHHhcCcEEEEEeCCCChhhhC--CCCeEEEEchhHHHHHHHHHHhh
Confidence 8899999999999999999999999999999999999999999999999999997 79999999999999999999996
Q ss_pred Hhh--cCCeeEEeecCCCCceEeCCCCEEEEeeCCCCCCChHHHHHHhcCCCcEEeeecccccccEEEEEcCC-CeEEec
Q 023993 197 FRE--LGCEAKLREGENGKPYITDNFNYIIDLYFETPIKDGVSAGTEIGKLEGVVEHGLFLDMATAVIIAGKT-GVEVKS 273 (274)
Q Consensus 197 ~~~--~g~~~~lR~~~~~gp~vTdnGN~IlD~~f~~~i~d~~~l~~~l~~ipGVVe~GlF~~~a~~viv~~~~-gv~~~~ 273 (274)
|.. +|+++++|+++ .+|||||||||||||+|+. |.||.+++++|++||||||||||.++|+.+++|+++ |+++++
T Consensus 174 ~~~~glgg~~~lR~~~-~gp~vTDnGN~IlD~~f~~-i~dp~~l~~~l~~i~GVVe~GLF~~~a~~vivg~~~~Gv~~~~ 251 (255)
T 3hhe_A 174 ADNLGLSGEITLRMNG-DDPFKTDGGHFIFDAFWGR-ILQPKLLSEALLAIPGVVEHGLFLGLASRAIVAMADSQIKVLE 251 (255)
T ss_dssp HHHHTCCSCEEECEET-TEECCCTTSCEEEEECCSC-CSCHHHHHHHHHTSTTEEEESEECSCCCEEEEECTTSCEEEEC
T ss_pred hccccCCCeEEEeeCC-CCcEEcCCCCEEEEeeCCC-cCCHHHHHHHHhcCCCEeeecccccCCCEEEEEcCCCCeEEEe
Confidence 544 46799999873 3899999999999999986 999999999999999999999999999999999999 999876
Q ss_pred C
Q 023993 274 K 274 (274)
Q Consensus 274 ~ 274 (274)
+
T Consensus 252 ~ 252 (255)
T 3hhe_A 252 P 252 (255)
T ss_dssp G
T ss_pred c
Confidence 4
No 4
>2pjm_A Ribose-5-phosphate isomerase A; 3D-structure, structural genomics, pentose phosphate pathway, carbon fixation, NPPSFA; 1.78A {Methanocaldococcus jannaschii} PDB: 3ixq_A*
Probab=100.00 E-value=7.1e-70 Score=487.16 Aligned_cols=224 Identities=44% Similarity=0.701 Sum_probs=212.0
Q ss_pred CChHHHHHHHHHHHHhcCCCCCEEEECcChHHHHHHHHHhchhhcCCCCCeEEECCcHHHHHHHHhCCCcEEEcCCCCcc
Q 023993 41 LTQDDLKKLAADKAVDYVKSGMALGLGTGSTAAFVVDRIGQLLKTGELRDIVGIPTSKRTEEQAKSLNIPLTTLDDHPSL 120 (274)
Q Consensus 41 ~~~~~~K~~iA~~A~~~I~dg~vIgLGsGSTv~~l~~~L~~~~~~~~l~~itvVT~S~~ta~~l~~~gi~vi~l~~~~~i 120 (274)
|+++++|++||++|++||+|||+||||||||+.+++++|+++.+++++ ++|+||||.+++.+|.++|++++.++... +
T Consensus 1 m~~~~~K~~iA~~A~~~I~~g~~IglgsGST~~~~~~~L~~~~~~~~l-~itvVtnS~~~a~~l~~~gi~v~~l~~~~-i 78 (226)
T 2pjm_A 1 MSNEDLKLKVAKEAVKLVKDGMVIGLGTGSTAALFIRELGNRIREEEL-TVFGIPTSFEAKMLAMQYEIPLVTLDEYD-V 78 (226)
T ss_dssp -CCHHHHHHHHHHHGGGCCTTCEEEECCSHHHHHHHHHHHHHHHHHTC-CCEEEESSHHHHHHHHHTTCCBCCTTTCC-C
T ss_pred CChHHHHHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHHhhhhccCC-cEEEEeCcHHHHHHHHhcCCeEEeecccc-C
Confidence 678999999999999999999999999999999999999987655555 79999999999999999999999999886 9
Q ss_pred cEEEEccCcccCC-CCcccCcchhHHHHHHHHHhcCcEEEEEcCCcccccCCCCcccccEEEecccHHHHHHHHHHhHhh
Q 023993 121 DLAIDGADEVDPE-LNLVKGRGGALLREKMVEAASKSFVVVADESKLVSGLGGSKLAMPVEVVQFCWKFNLVRLQDLFRE 199 (274)
Q Consensus 121 D~afdGaD~Vd~~-~~~ikg~gga~l~EKila~~S~~~IvLaD~sK~~~~Lg~~~~plPvEV~p~a~~~v~~~l~~l~~~ 199 (274)
|+||||||+||++ ++++||+|+|++|||+++++|+++|+|+|+|||+++|| .+|||||||+||+|.+|.++|+++
T Consensus 79 D~afdGaDevd~~t~~likGgg~al~rEKiva~~A~~~IviaD~sK~~~~Lg-~~~~lPvEV~p~a~~~v~~~l~~~--- 154 (226)
T 2pjm_A 79 DIAFDGADEVEETTLFLIKGGGGCHTQEKIVDYNANEFVVLVDESKLVKKLG-EKFPIPVEVIPSAYRVVIRALSEM--- 154 (226)
T ss_dssp SEEEECCSEEETTTCCEECCTTSCHHHHHHHHHHSSEEEEEEEGGGEESSTT-SSSCEEEEECGGGHHHHHHHHHHT---
T ss_pred CEEEEcCceeccccCceeeccchhhHHHHHHHHHhCcEEEEEecchhhhccC-CCCCEEEEEehhHHHHHHHHHHHc---
Confidence 9999999999999 99999999999999999999999999999999999996 469999999999999999999987
Q ss_pred cCCeeEEeecCCC-CceEeCCCCEEEEeeCCCCCCChHHHHHHhcCCCcEEeeecccccccEEEEEcCCCeEEecC
Q 023993 200 LGCEAKLREGENG-KPYITDNFNYIIDLYFETPIKDGVSAGTEIGKLEGVVEHGLFLDMATAVIIAGKTGVEVKSK 274 (274)
Q Consensus 200 ~g~~~~lR~~~~~-gp~vTdnGN~IlD~~f~~~i~d~~~l~~~l~~ipGVVe~GlF~~~a~~viv~~~~gv~~~~~ 274 (274)
|+++.+|++.++ |||+|||||||+|| |+. +.||.+++++|++||||||||||.+ +|.+++|+++|+++++|
T Consensus 155 -g~~~~lR~~~~~~gp~vTDnGn~IlD~-~~~-i~~p~~l~~~l~~i~GVve~GlF~~-a~~v~~~~~~g~~~~~~ 226 (226)
T 2pjm_A 155 -GGEAVIRLGDRKRGPVITDNGNMIIDV-FMN-IDDAIELEKEINNIPGVVENGIFTK-VDKVLVGTKKGVKTLKK 226 (226)
T ss_dssp -TCEEEECBCSSSSSBCBCTTSCEEEEE-ECC-CSCHHHHHHHHHTSTTEEEESEECC-CSEEEEEETTEEEEECC
T ss_pred -CCceEEeecCCCCCcEEcCCCCEEEEe-CCC-CCCHHHHHHHhcCCCCEEeecCccC-CCEEEEEcCCceEEccC
Confidence 999999998766 99999999999999 975 9999999999999999999999999 99999999999999987
No 5
>3ixq_A Ribose-5-phosphate isomerase A; structural genomics, pentose phosphate pathway, carbon fixation, NPPSFA; HET: PGO; 1.78A {Methanocaldococcus jannaschii}
Probab=100.00 E-value=9e-70 Score=485.40 Aligned_cols=224 Identities=43% Similarity=0.704 Sum_probs=211.7
Q ss_pred CChHHHHHHHHHHHHhcCCCCCEEEECcChHHHHHHHHHhchhhcCCCCCeEEECCcHHHHHHHHhCCCcEEEcCCCCcc
Q 023993 41 LTQDDLKKLAADKAVDYVKSGMALGLGTGSTAAFVVDRIGQLLKTGELRDIVGIPTSKRTEEQAKSLNIPLTTLDDHPSL 120 (274)
Q Consensus 41 ~~~~~~K~~iA~~A~~~I~dg~vIgLGsGSTv~~l~~~L~~~~~~~~l~~itvVT~S~~ta~~l~~~gi~vi~l~~~~~i 120 (274)
|++++.|+++|++|++||+|||+||||||||+.+|+++|+++++++.+ ++++||+|.+++.++.++|+++..++... +
T Consensus 1 M~~d~~K~~aa~~A~~~V~~gmvvGlGTGSTv~~~I~~L~~~~~~~~l-~i~~v~tS~~t~~~a~~~gi~l~~l~~~~-i 78 (226)
T 3ixq_A 1 MSNEDLKLKVAKEAVKLVKDGMVIGLGTGSTAALFIRELGNRIREEEL-TVFGIPTSFEAKMLAMQYEIPLVTLDEYD-V 78 (226)
T ss_dssp -CCHHHHHHHHHHHGGGCCTTCEEEECCSHHHHHHHHHHHHHHHHHTC-CCEEEESSHHHHHHHHHTTCCBCCTTTCC-C
T ss_pred CCHHHHHHHHHHHHHHhCCCCCEEEeCcHHHHHHHHHHHHHhhhhcCC-eeEeecccHHHHHHHHhcCCCcccccccc-c
Confidence 789999999999999999999999999999999999999999887776 59999999999999999999999998874 9
Q ss_pred cEEEEccCccc-CCCCcccCcchhHHHHHHHHHhcCcEEEEEcCCcccccCCCCcccccEEEecccHHHHHHHHHHhHhh
Q 023993 121 DLAIDGADEVD-PELNLVKGRGGALLREKMVEAASKSFVVVADESKLVSGLGGSKLAMPVEVVQFCWKFNLVRLQDLFRE 199 (274)
Q Consensus 121 D~afdGaD~Vd-~~~~~ikg~gga~l~EKila~~S~~~IvLaD~sK~~~~Lg~~~~plPvEV~p~a~~~v~~~l~~l~~~ 199 (274)
|+||||||||| +++++|||||||++|||+++++|+++|+|+|+||++++|| .+|||||||+||+|.+|.++|+++
T Consensus 79 Dl~iDGADEvd~~~l~lIKGGGgAl~rEKivA~~a~~~I~I~D~sK~v~~LG-~~fplPVEVip~a~~~v~~~l~~l--- 154 (226)
T 3ixq_A 79 DIAFDGADEVEETTLFLIKGGGGCHTQEKIVDYNANEFVVLVDESKLVKKLG-EKFPIPVEVIPSAYRVVIRALSEM--- 154 (226)
T ss_dssp SEEEECCSEEETTTCCEECCTTSCHHHHHHHHHHSSEEEEEEEGGGEESSTT-SSSCEEEEECGGGHHHHHHHHHHT---
T ss_pred cEEEeCcchhccccceEEecchHHHHHHHHHHHHhhheEEEeccccchhhcC-CCCCccEEEechHHHHHHHHHHHc---
Confidence 99999999998 5899999999999999999999999999999999999996 369999999999999999999987
Q ss_pred cCCeeEEeecCCC-CceEeCCCCEEEEeeCCCCCCChHHHHHHhcCCCcEEeeecccccccEEEEEcCCCeEEecC
Q 023993 200 LGCEAKLREGENG-KPYITDNFNYIIDLYFETPIKDGVSAGTEIGKLEGVVEHGLFLDMATAVIIAGKTGVEVKSK 274 (274)
Q Consensus 200 ~g~~~~lR~~~~~-gp~vTdnGN~IlD~~f~~~i~d~~~l~~~l~~ipGVVe~GlF~~~a~~viv~~~~gv~~~~~ 274 (274)
|+++++|++.++ +|++|||||||+||+| ++.||.+++++|++||||||||||.++ |.+++|+++|+++++|
T Consensus 155 -G~~~~~R~~~~~~gp~vTDnGN~IlD~~~--~i~dp~~l~~~L~~ipGVVe~GlF~~~-~~vivg~~~Gv~~i~k 226 (226)
T 3ixq_A 155 -GGEAVIRLGDRKRGPVITDNGNMIIDVFM--NIDDAIELEKEINNIPGVVENGIFTKV-DKVLVGTKKGVKTLKK 226 (226)
T ss_dssp -TCEEEECBCSSSSSBCBCTTSCEEEEEEC--CCSCHHHHHHHHHTSTTEEEESEECCC-SEEEEEETTEEEEECC
T ss_pred -CCCceEEeeccCCCceEecCCCEEEEecC--CCCCHHHHHHHHhCCCCEEeeCcccCC-CEEEEEeCCeEEEEeC
Confidence 999999998776 9999999999999987 399999999999999999999999985 7899999999999986
No 6
>3uw1_A Ribose-5-phosphate isomerase A; ssgcid, seattle structural genomics center for infectious DI isomerase, ribose isomerase; HET: R5P; 1.71A {Burkholderia thailandensis} PDB: 3u7j_A*
Probab=100.00 E-value=2.5e-69 Score=486.47 Aligned_cols=222 Identities=38% Similarity=0.551 Sum_probs=209.7
Q ss_pred CCChHHHHHHHHHHHHhcCCC----CCEEEECcChHHHHHHHHHhchhhcCCCCCeE-EECCcHHHHHHHHhCCCcEEEc
Q 023993 40 ALTQDDLKKLAADKAVDYVKS----GMALGLGTGSTAAFVVDRIGQLLKTGELRDIV-GIPTSKRTEEQAKSLNIPLTTL 114 (274)
Q Consensus 40 ~~~~~~~K~~iA~~A~~~I~d----g~vIgLGsGSTv~~l~~~L~~~~~~~~l~~it-vVT~S~~ta~~l~~~gi~vi~l 114 (274)
.|+++++|+++|++|++||+| ||+||||||||+.+++++|+++. .+++ +||||.+++.+|.++||+++.+
T Consensus 8 ~m~~~~~K~~aA~~A~~~V~d~~~~g~vIGLGtGST~~~~i~~L~~~~-----~~i~~~V~tS~~t~~~~~~~Gi~l~~l 82 (239)
T 3uw1_A 8 LMTQDELKRLVGEAAARYVTDNVPQGAVIGVGTGSTANCFIDALAAVK-----DRYRGAVSSSVATTERLKSHGIRVFDL 82 (239)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHSCTTCEEEECCSHHHHHHHHHHHTTG-----GGSCEEEESSHHHHHHHHHTTCCBCCG
T ss_pred cCCHHHHHHHHHHHHHHHhhccCcCCCEEEECccHHHHHHHHHHHhhh-----ccceEEeCCcHHHHHHHHHcCCcEEec
Confidence 488999999999999999999 99999999999999999999863 2577 7999999999999999999999
Q ss_pred CCCCcccEEEEccCcccCCCCcccCcchhHHHHHHHHHhcCcEEEEEcCCcccccCCCCcccccEEEecccHHHHHHHHH
Q 023993 115 DDHPSLDLAIDGADEVDPELNLVKGRGGALLREKMVEAASKSFVVVADESKLVSGLGGSKLAMPVEVVQFCWKFNLVRLQ 194 (274)
Q Consensus 115 ~~~~~iD~afdGaD~Vd~~~~~ikg~gga~l~EKila~~S~~~IvLaD~sK~~~~Lg~~~~plPvEV~p~a~~~v~~~l~ 194 (274)
++..++|+|||||||||+++++|||||||++|||+++++|+++|+|+|+||++++|| +|||||||+||+|.+|.++|+
T Consensus 83 ~~~~~iD~a~DGADeVd~~l~lIKGgGgal~rEKiva~~A~~~ivIaD~sK~v~~Lg--~~plPVEViP~a~~~v~~~l~ 160 (239)
T 3uw1_A 83 NEIESLQVYVDGADEIDESGAMIKGGGGALTREKIVASVAETFVCIADASKRVAMLG--QFPLPVEVVPMARTAIGRRLA 160 (239)
T ss_dssp GGCSCEEEEEECCSEECTTCCEECCSSSCHHHHHHHHHHEEEEEEEEEGGGBCSSBT--SSCEEEEECGGGHHHHHHHHH
T ss_pred ccccccCEEEECCcccCcccCEecCchHHHHHHHHHHHhCCcEEEEEecchhhhhcC--CCCeEEEEChhHHHHHHHHHH
Confidence 998999999999999999999999999999999999999999999999999999997 599999999999999999999
Q ss_pred HhHhhcCCeeEEeecCCCCceEeCCCCEEEEeeCCCCCCChHHHHHHhcCCCcEEeeecccc-cccEEEEEcCCCeEEec
Q 023993 195 DLFRELGCEAKLREGENGKPYITDNFNYIIDLYFETPIKDGVSAGTEIGKLEGVVEHGLFLD-MATAVIIAGKTGVEVKS 273 (274)
Q Consensus 195 ~l~~~~g~~~~lR~~~~~gp~vTdnGN~IlD~~f~~~i~d~~~l~~~l~~ipGVVe~GlF~~-~a~~viv~~~~gv~~~~ 273 (274)
++ |+++.+|++.+++||+||||||||||+|.. +.||.+|+++|++||||||||||.+ +||.+++|+++|+++++
T Consensus 161 ~l----G~~~~lR~~~~g~p~vTDnGN~IlD~~~~~-i~dp~~l~~~l~~i~GVVe~GlF~~~~a~~vivg~~~Gv~~~~ 235 (239)
T 3uw1_A 161 AL----GGVPVLRVKQDGTPYVTDNGNEILDVKGLR-IDDPRALEAAINGWPGVVTVGLFAQRGADLCLLGTEHGVETLR 235 (239)
T ss_dssp HT----TCEEEECBCTTSSBCCCTTSCEEEEEESCC-BSCHHHHHHHHHTSTTEEEESEECTTCCSEEEEEETTEEEEEE
T ss_pred Hc----CCCeEEeecCCCCceEccCCCEEEEecCCC-CCCHHHHHHHHcCCCCEEeecCCcCCCCCEEEEEcCCceEEEe
Confidence 86 999999997655799999999999999985 9999999999999999999999998 59999999999998764
No 7
>1lk5_A D-ribose-5-phosphate isomerase; alpha/beta structure; 1.75A {Pyrococcus horikoshii} SCOP: c.124.1.4 d.58.40.1 PDB: 1lk7_A*
Probab=100.00 E-value=1e-67 Score=474.35 Aligned_cols=228 Identities=43% Similarity=0.728 Sum_probs=211.9
Q ss_pred CChHHHHHHHHHHHHhcCCCCCEEEECcChHHHHHHHHHhchhhcCCCCCeEEECCcHHHHHHHHhCCCcEEEcCCCCcc
Q 023993 41 LTQDDLKKLAADKAVDYVKSGMALGLGTGSTAAFVVDRIGQLLKTGELRDIVGIPTSKRTEEQAKSLNIPLTTLDDHPSL 120 (274)
Q Consensus 41 ~~~~~~K~~iA~~A~~~I~dg~vIgLGsGSTv~~l~~~L~~~~~~~~l~~itvVT~S~~ta~~l~~~gi~vi~l~~~~~i 120 (274)
|+++++|++||++|+++|+|||+||||+|||+.+++++|+++++++.+.++|+||||++++.+|.+.|++++.++...++
T Consensus 1 m~~~~~K~~IA~~Aa~~I~dg~~I~LdsGST~~~~a~~L~~~~~~~~l~~itvVTnS~~~a~~l~~~gi~vi~l~~~~~~ 80 (229)
T 1lk5_A 1 MNVEEMKKIAAKEALKFIEDDMVIGLGTGSTTAYFIKLLGEKLKRGEISDIVGVPTSYQAKLLAIEHDIPIASLDQVDAI 80 (229)
T ss_dssp CCHHHHHHHHHHHHGGGCCTTCEEEECCSHHHHHHHHHHHHHHHTTSSCSCEEEESSHHHHHHHHHTTCCBCCGGGCSCE
T ss_pred CChHHHHHHHHHHHHHhCCCCCEEEEcChHHHHHHHHHHhhhhhhccCCCEEEECCcHHHHHHHHhCCCeEEEeCCcccC
Confidence 67789999999999999999999999999999999999987654444437999999999999998889999999887899
Q ss_pred cEEEEccCcccCCCCcccCcchhHHHHHHHHHhcCcEEEEEcCCcccccCCCCcccccEEEecccHHHHHHHHHHhHhhc
Q 023993 121 DLAIDGADEVDPELNLVKGRGGALLREKMVEAASKSFVVVADESKLVSGLGGSKLAMPVEVVQFCWKFNLVRLQDLFREL 200 (274)
Q Consensus 121 D~afdGaD~Vd~~~~~ikg~gga~l~EKila~~S~~~IvLaD~sK~~~~Lg~~~~plPvEV~p~a~~~v~~~l~~l~~~~ 200 (274)
|+||||||+||+++++++++++|+++||+++++|+++|+|+|+|||+++|| ++|||||||+||+|.+|+++|+++
T Consensus 81 D~af~Gadgid~~~g~~~~~~~a~~kekiv~~~A~~~ivlaD~SK~~~~lg-~~~~lPvEV~p~~~~~v~~~l~~l---- 155 (229)
T 1lk5_A 81 DVAVDGADEVDPNLNLIKGRGAALTMEKIIEYRAGTFIVLVDERKLVDYLC-QKMPVPIEVIPQAWKAIIEELSIF---- 155 (229)
T ss_dssp EEEEECCSEECTTCCEECCTTSCHHHHHHHHHTEEEEEEEEEGGGBCSSTT-SSCCEEEEECGGGHHHHHHHGGGG----
T ss_pred CEEEECCCeECCCCCeecCHHHHHHHHHHHHHhcCCeEEEEchhhhhhhcC-CCCCEEEEECcchHHHHHHHHHHc----
Confidence 999999999999999999999999999999999999999999999999996 468999999999999999999987
Q ss_pred CCeeEEeecCCC-CceEeCCCCEEEEeeCCCCCCChHHHHHHhcCCCcEEeeecccccccEEEEEcCCCeEEecC
Q 023993 201 GCEAKLREGENG-KPYITDNFNYIIDLYFETPIKDGVSAGTEIGKLEGVVEHGLFLDMATAVIIAGKTGVEVKSK 274 (274)
Q Consensus 201 g~~~~lR~~~~~-gp~vTdnGN~IlD~~f~~~i~d~~~l~~~l~~ipGVVe~GlF~~~a~~viv~~~~gv~~~~~ 274 (274)
|+++.+|++.++ +||+|||||||+||+|+. +.||.+++++|++||||||||||.++++.+++|+++|++++++
T Consensus 156 g~~~~~R~~~~~~~~~vTdnGn~IlD~~~~~-i~~p~~l~~~l~~i~GVve~GlF~~~a~~~~~~~~~g~~~~~~ 229 (229)
T 1lk5_A 156 NAKAELRMGVNKDGPVITDNGNFIIDAKFPR-IDDPLDMEIELNTIPGVIENGIFADIADIVIVGTREGVKKLER 229 (229)
T ss_dssp TCEEEECBCSSSSSBCCCTTSCEEEEEECSC-CSCHHHHHHHHHTSTTEEEESEECSCCCEEEEEETTEEEEEEC
T ss_pred CCCeEEeeccCCCCcEEcCCCCEEEEeeCCC-CCCHHHHHHHHhcCCCcceecccccCCCEEEEEeCCCeEEeCC
Confidence 899999986434 999999999999999975 9999999999999999999999999999999999999888753
No 8
>2f8m_A Ribose 5-phosphate isomerase; structural genomics, PSI, protein structure initiative, STRU genomics of pathogenic protozoa consortium; 2.09A {Plasmodium falciparum}
Probab=100.00 E-value=3.7e-67 Score=474.28 Aligned_cols=228 Identities=48% Similarity=0.812 Sum_probs=210.4
Q ss_pred hHHHHHHHHHHHHh-cCCCCCEEEECcChHHHHHHHHHhchhhcCCCCCeEEECCcHHHHHHHHhCCCcEEEcCCCCccc
Q 023993 43 QDDLKKLAADKAVD-YVKSGMALGLGTGSTAAFVVDRIGQLLKTGELRDIVGIPTSKRTEEQAKSLNIPLTTLDDHPSLD 121 (274)
Q Consensus 43 ~~~~K~~iA~~A~~-~I~dg~vIgLGsGSTv~~l~~~L~~~~~~~~l~~itvVT~S~~ta~~l~~~gi~vi~l~~~~~iD 121 (274)
+++.|++||++|++ +|+|||+||||||||+.+++++|++++++++++++++||||++++.+|.++|++++.++.+.++|
T Consensus 9 ~~~~K~~iA~~Aa~~~I~dg~~IgLgsGST~~~~~~~L~~~~~~~~l~~itvVTnS~~~a~~l~~~gi~v~~l~~~~~iD 88 (244)
T 2f8m_A 9 MDSLKKIVAYKAVDEYVQSNMTIGLGTGSTVFYVLERIDNLLKSGKLKDVVCIPTSIDTELKARKLGIPLTTLEKHSNID 88 (244)
T ss_dssp HHHHHHHHHHHHHHHHCCTTCEEEECCSTTTHHHHHHHHHHHHHTSSCSCEEEESSHHHHHHHHHHTCCBCCCCSSCCBS
T ss_pred hHHHHHHHHHHHHHHhCCCCCEEEEcChHHHHHHHHHHhhhhhccCCCCEEEECCcHHHHHHHHHCCCeEEEecccCcCC
Confidence 57899999999999 99999999999999999999999877655555579999999999999988899999998877999
Q ss_pred EEEEccCcccCCCCcccCcchhHHHHHHHHHhcCcEEEEEcCCccc-ccCCCCcccccEEEecccHHHHHHHHHHhHhhc
Q 023993 122 LAIDGADEVDPELNLVKGRGGALLREKMVEAASKSFVVVADESKLV-SGLGGSKLAMPVEVVQFCWKFNLVRLQDLFREL 200 (274)
Q Consensus 122 ~afdGaD~Vd~~~~~ikg~gga~l~EKila~~S~~~IvLaD~sK~~-~~Lg~~~~plPvEV~p~a~~~v~~~l~~l~~~~ 200 (274)
+||||||+||++++++|++|+|+++||+++++|+++|+|+|+|||+ ++||. +|||||||+||+|.+|+++|+++|...
T Consensus 89 ~afdGaDeId~~~glikg~g~Al~kekiva~~A~~~ivlaD~SK~~~~~Lg~-~~plPvEV~p~a~~~v~~~l~~l~~~~ 167 (244)
T 2f8m_A 89 ITIDGTDEIDLNLNLIKGRGGALVREKLVASSSSLLIIIGDESKLCTNGLGM-TGAVPIEILTFGYEKIIENLLKIYTLK 167 (244)
T ss_dssp EEEECCSEECTTCCEECCTTSCHHHHHHHHHTBSCEEEEEEGGGBCSSCTTC-SSCEEEEECSTTHHHHHHHHTTSTTTT
T ss_pred EEEECCcccCCCCCcccCHHHHHHHHHHHHHhhCcEEEEEECCccccccCCC-CCcEEEEEcccHHHHHHHHHHHHhhcc
Confidence 9999999999999999999999999999999999999999999999 99963 689999999999999999999986555
Q ss_pred CCeeEEeecCCCCceEeCCCCEEEEeeCCCCCCChHHHHHHhcCCCcEEeeecccccccEEEEEcCCC-eEEe
Q 023993 201 GCEAKLREGENGKPYITDNFNYIIDLYFETPIKDGVSAGTEIGKLEGVVEHGLFLDMATAVIIAGKTG-VEVK 272 (274)
Q Consensus 201 g~~~~lR~~~~~gp~vTdnGN~IlD~~f~~~i~d~~~l~~~l~~ipGVVe~GlF~~~a~~viv~~~~g-v~~~ 272 (274)
|+++.+|+.+ ++||+|||||||+||+|+.|+.||.+++++|++||||||||||.++++.+++|+++| +...
T Consensus 168 G~~~~lR~~~-~~p~vTDnGn~IlD~~f~~~i~dp~~l~~~l~~i~GVVe~GlF~~~a~~vi~~~~~G~v~~~ 239 (244)
T 2f8m_A 168 GCTYKIRKRN-GEIFITDNKNYIVDFFFTEPIQDLLETCTRIKMTTGVVDHGIFVNMTNVALISKHDGTVLTL 239 (244)
T ss_dssp TCEEEECEET-TEECCCTTSCEEEEEECSSCCSSHHHHHHHHHTSTTEEEESEECSCCSEEEEECTTSCEEEE
T ss_pred CCceEEEEcC-CCcEEcCCCCEEEEecCCCCCCCHHHHHHHHhcCCCcceeeeEecCCCEEEEEeCCCeEEee
Confidence 8899999832 489999999999999998669999999999999999999999999999999999999 4444
No 9
>3kwm_A Ribose-5-phosphate isomerase A; structural genomics, IDP02119, center for structu genomics of infectious diseases, csgid; 2.32A {Francisella tularensis subsp}
Probab=100.00 E-value=1.2e-66 Score=465.72 Aligned_cols=218 Identities=36% Similarity=0.545 Sum_probs=204.5
Q ss_pred ccCCChHHHHHHHHHHHHhcCCCCCEEEECcChHHHHHHHHHhchhhcCCCCCeEE-ECCcHHHHHHHHhCCCcEEEcCC
Q 023993 38 VPALTQDDLKKLAADKAVDYVKSGMALGLGTGSTAAFVVDRIGQLLKTGELRDIVG-IPTSKRTEEQAKSLNIPLTTLDD 116 (274)
Q Consensus 38 ~~~~~~~~~K~~iA~~A~~~I~dg~vIgLGsGSTv~~l~~~L~~~~~~~~l~~itv-VT~S~~ta~~l~~~gi~vi~l~~ 116 (274)
+..|+++++|++||++|+++|+|||+||||||||+.+++++|+++. +++++ ||||.+++.+|.++|++++.+++
T Consensus 4 ~~~~~~~~~K~~iA~~A~~~V~~g~~IglgsGST~~~~i~~L~~~~-----~~itv~VtnS~~~a~~l~~~gi~l~~l~~ 78 (224)
T 3kwm_A 4 NKKNNQDELKKLAATEAAKSITTEITLGVGTGSTVGFLIEELVNYR-----DKIKTVVSSSEDSTRKLKALGFDVVDLNY 78 (224)
T ss_dssp ---CCHHHHHHHHHHHHHTTCCSSEEEEECCSHHHHHHHHHGGGCT-----TTEEEEEESCHHHHHHHHHTTCCBCCHHH
T ss_pred hhhcChHHHHHHHHHHHHHhCCCCCEEEECCcHHHHHHHHHHHhhc-----CceEEEECCcHHHHHHHHHcCCeEEecCc
Confidence 3458899999999999999999999999999999999999998752 37998 99999999999999999999988
Q ss_pred CCcccEEEEccCcccCCCCcccCcchhHHHHHHHHHhcCcEEEEEcCCcccccCCCCcccccEEEecccHHHHHHHHHHh
Q 023993 117 HPSLDLAIDGADEVDPELNLVKGRGGALLREKMVEAASKSFVVVADESKLVSGLGGSKLAMPVEVVQFCWKFNLVRLQDL 196 (274)
Q Consensus 117 ~~~iD~afdGaD~Vd~~~~~ikg~gga~l~EKila~~S~~~IvLaD~sK~~~~Lg~~~~plPvEV~p~a~~~v~~~l~~l 196 (274)
.+++|+||||||+||++++++||+|+|++|||+++++|+++|+|+|+|||+++|| +||+||||+||+|.+|.++|+++
T Consensus 79 ~~~iD~afdGADevd~~~~liKGgg~al~rEKiva~~A~~~iviaD~sK~~~~Lg--~~plPvEV~p~a~~~v~~~l~~l 156 (224)
T 3kwm_A 79 AGEIDLYIDGADECNNHKELIKGGGAALTREKICVAAAKKFICIIDESKKVNTLG--NFPLPIEVIPMARSYIARQIVKL 156 (224)
T ss_dssp HCSEEEEEECCSEECTTSCEECCSSSCHHHHHHHHHTEEEEEEEEEGGGBCSSBC--SSCEEEEECGGGHHHHHHHHHHT
T ss_pred cccccEEEECCCccccccCeecCchhhHHHHHHHHHhcCcEEEEEeCchhhhhcC--CCCeEEEEChHHHHHHHHHHHHc
Confidence 8899999999999999999999999999999999999999999999999999997 69999999999999999999987
Q ss_pred HhhcCCeeEEeecCCCCceEeCCCCEEEEeeCCCCCCChHHHHHHhcCCCcEEeeeccccc-ccEEEEEcCCCeEEe
Q 023993 197 FRELGCEAKLREGENGKPYITDNFNYIIDLYFETPIKDGVSAGTEIGKLEGVVEHGLFLDM-ATAVIIAGKTGVEVK 272 (274)
Q Consensus 197 ~~~~g~~~~lR~~~~~gp~vTdnGN~IlD~~f~~~i~d~~~l~~~l~~ipGVVe~GlF~~~-a~~viv~~~~gv~~~ 272 (274)
|+++.+|+ +++|||||||+||+|+. +.||.+++++|++||||||||||.++ ++.+++|.++|++++
T Consensus 157 ----g~~~~lR~-----~~vTDnGn~IlD~~~~~-i~dp~~l~~~l~~i~GVVe~GlF~~~~~~~vi~g~~~g~~~~ 223 (224)
T 3kwm_A 157 ----GGQPVYRE-----QTITDNGNVILDVYNLK-IDNPLKLETELNQITGVVTNGIFALKPADTVIMATKDSNIVV 223 (224)
T ss_dssp ----TCEEEECT-----TCCCTTSCEEEEEESCC-BSCHHHHHHHHHTSTTEEEESEECSSCCSEEEEECTTSCEEE
T ss_pred ----CCCeEEec-----CcCccCCCEEEEcCCCC-CCCHHHHHHHHcCCCCEeeeCcccCCcCCEEEEEcCCceEEe
Confidence 99999995 59999999999999985 99999999999999999999999985 799999999998875
No 10
>1xtz_A Ribose-5-phosphate isomerase; yeast; 2.10A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.8e-65 Score=466.71 Aligned_cols=231 Identities=35% Similarity=0.545 Sum_probs=204.0
Q ss_pred ccccCCChHHHHHHHHHHHHh-cCC--CCCEEEECcChHHHHHHHHHhchhhcCCCC----CeEEECCcHHHHHHHHhCC
Q 023993 36 QAVPALTQDDLKKLAADKAVD-YVK--SGMALGLGTGSTAAFVVDRIGQLLKTGELR----DIVGIPTSKRTEEQAKSLN 108 (274)
Q Consensus 36 ~~~~~~~~~~~K~~iA~~A~~-~I~--dg~vIgLGsGSTv~~l~~~L~~~~~~~~l~----~itvVT~S~~ta~~l~~~g 108 (274)
+..+.|+++++|++||++|++ +|+ |||+||||+|||+.+++++|+++++++.++ ++++||||++++.+|.+.|
T Consensus 11 ~~~~~~~~~~~K~~IA~~Aa~~~I~~~dg~~IgLgsGST~~~~a~~L~~~~~~~~l~~~~~~itvVTnS~~~a~~l~~~g 90 (264)
T 1xtz_A 11 LESLGNPLEDAKRAAAYRAVDENLKFDDHKIIGIGSGSTVVYVAERIGQYLHDPKFYEVASKFICIPTGFQSRNLILDNK 90 (264)
T ss_dssp --------CHHHHHHHHHHHHHHCCTTTCCEEEECCCSSTHHHHHHHHHHHTSTTTHHHHTTCEEEESSHHHHHHHHHTT
T ss_pred CcccCCCHHHHHHHHHHHHHHhccCCCCCCEEEEcChHHHHHHHHHHhHhhhccccccccCCEEEECCcHHHHHHHHHCC
Confidence 334567788999999999998 999 999999999999999999998765333221 5999999999999999889
Q ss_pred CcEEEcCCCCcccEEEEccCcccCCCCcccCcchhHHHHHHHHHhcCcEEEEEcCCccc-ccCCCCcc--cccEEEeccc
Q 023993 109 IPLTTLDDHPSLDLAIDGADEVDPELNLVKGRGGALLREKMVEAASKSFVVVADESKLV-SGLGGSKL--AMPVEVVQFC 185 (274)
Q Consensus 109 i~vi~l~~~~~iD~afdGaD~Vd~~~~~ikg~gga~l~EKila~~S~~~IvLaD~sK~~-~~Lg~~~~--plPvEV~p~a 185 (274)
++++.+..+.++|+||||||+||++++++|++|+|+++||+++++|+++|+|+|+|||+ ++||. +| ||||||+||+
T Consensus 91 i~v~~l~~~~~iD~afdGADgId~~~~likg~g~A~~kekiva~~A~~~IvlaD~SK~~~~~Lg~-~~~~plPVEV~p~a 169 (264)
T 1xtz_A 91 LQLGSIEQYPRIDIAFDGADEVDENLQLIKGGGACLFQEKLVSTSAKTFIVVADSRKKSPKHLGK-NWRQGVPIEIVPSS 169 (264)
T ss_dssp CEECCTTTCCSEEEEEECCSEECTTSCEECCTTSCHHHHHHHHTTEEEEEEEEEGGGBCSSSBTS-SCCSCEEEEECGGG
T ss_pred CeEEEehhcCcCCEEEECCcccCCCCCeecCHHHHHHHHHHHHHhhCcEEEEEEccccccccccc-cCCCCEeEEEChhH
Confidence 99999988789999999999999999999999999999999999999999999999999 99963 56 9999999999
Q ss_pred HHHHHHHHHHhHhhcCC-eeEEeec-CCC-CceEeCCCCEEEEeeCCCCCCChHHHHHHhcCCCcEEeeecccccccEEE
Q 023993 186 WKFNLVRLQDLFRELGC-EAKLREG-ENG-KPYITDNFNYIIDLYFETPIKDGVSAGTEIGKLEGVVEHGLFLDMATAVI 262 (274)
Q Consensus 186 ~~~v~~~l~~l~~~~g~-~~~lR~~-~~~-gp~vTdnGN~IlD~~f~~~i~d~~~l~~~l~~ipGVVe~GlF~~~a~~vi 262 (274)
|.+|+++|++. +|+ ++++|++ .++ ||||||||||||||+|+. +.||.+|+++|++||||||||||.++++.+|
T Consensus 170 ~~~v~~~l~~~---~g~~~~~lR~~~~~~~~p~vTDnGN~IlD~~f~~-i~dp~~l~~~l~~i~GVVe~GlF~~~a~~vi 245 (264)
T 1xtz_A 170 YVRVKNDLLEQ---LHAEKVDIRQGGSAKAGPVVTDNNNFIIDADFGE-ISDPRKLHREIKLLVGVVETGLFIDNASKAY 245 (264)
T ss_dssp HHHHHHHHHHT---SCCSEEEECEETTTEEEECCCTTSCEEEEEECSS-BSCHHHHHHHHHTSTTEEEESEECSCCSEEE
T ss_pred HHHHHHHHHHH---cCCCCceEeecccCCCCCEEcCCCCEEEEeeCCC-CCCHHHHHHHHhcCCCccccceEecCCCEEE
Confidence 99999999443 277 9999985 344 899999999999999986 9999999999999999999999999999999
Q ss_pred EEcCCCeEE
Q 023993 263 IAGKTGVEV 271 (274)
Q Consensus 263 v~~~~gv~~ 271 (274)
+|+++|+.+
T Consensus 246 ~~~~~G~~~ 254 (264)
T 1xtz_A 246 FGNSDGSVE 254 (264)
T ss_dssp EECTTSCEE
T ss_pred EEeCCceEE
Confidence 999999444
No 11
>1m0s_A Ribose-5-phosphate isomerase A; D-ribose 5-phosphate isomerase, northeast structural genomics consortium, IR21, structural genomics, PSI; HET: CIT; 1.90A {Haemophilus influenzae} SCOP: c.124.1.4 d.58.40.1
Probab=100.00 E-value=2.4e-64 Score=449.71 Aligned_cols=216 Identities=38% Similarity=0.577 Sum_probs=203.2
Q ss_pred CChHHHHHHHHHHHHhcCCCCCEEEECcChHHHHHHHHHhchhhcCCCCCeEE-ECCcHHHHHHHHhCCCcEEEcCCCCc
Q 023993 41 LTQDDLKKLAADKAVDYVKSGMALGLGTGSTAAFVVDRIGQLLKTGELRDIVG-IPTSKRTEEQAKSLNIPLTTLDDHPS 119 (274)
Q Consensus 41 ~~~~~~K~~iA~~A~~~I~dg~vIgLGsGSTv~~l~~~L~~~~~~~~l~~itv-VT~S~~ta~~l~~~gi~vi~l~~~~~ 119 (274)
|+++++|++||++|+++|+|||+||||+|||+.+++++|+++ + .++|+ ||||++++.+|.+.|++++.++...+
T Consensus 1 m~~~~~K~~IA~~Aa~~I~dg~~I~LdsGST~~~la~~L~~~-~----~~itv~VTnS~~~a~~l~~~gi~vi~l~~~~~ 75 (219)
T 1m0s_A 1 MNQLEMKKLAAQAALQYVKADRIVGVGSGSTVNCFIEALGTI-K----DKIQGAVAASKESEELLRKQGIEVFNANDVSS 75 (219)
T ss_dssp CCHHHHHHHHHHHHGGGCCTTSEEEECCSHHHHHHHHHHHTT-G----GGSCEEEESSHHHHHHHHHTTCCBCCGGGCSC
T ss_pred CCcHHHHHHHHHHHHHhCCCCCEEEEcChHHHHHHHHHHhcc-C----CCEEEEECChHHHHHHHHhCCCeEEEeCcccc
Confidence 677899999999999999999999999999999999999864 1 16899 99999999999888999999987779
Q ss_pred ccEEEEccCcccCCCCcccCcchhHHHHHHHHHhcCcEEEEEcCCcccccCCCCcccccEEEecccHHHHHHHHHHhHhh
Q 023993 120 LDLAIDGADEVDPELNLVKGRGGALLREKMVEAASKSFVVVADESKLVSGLGGSKLAMPVEVVQFCWKFNLVRLQDLFRE 199 (274)
Q Consensus 120 iD~afdGaD~Vd~~~~~ikg~gga~l~EKila~~S~~~IvLaD~sK~~~~Lg~~~~plPvEV~p~a~~~v~~~l~~l~~~ 199 (274)
+|+||||||+||+++++++++++|+++||+++++|+++|+|+|+|||+++|| ++|||||||+||+|.+|+++|+++
T Consensus 76 ~D~af~Gadgid~~~g~~~~~~~a~~kekiv~~~A~~~ivlaD~SK~~~~lg-~~~~lPvEV~p~~~~~v~~~l~~l--- 151 (219)
T 1m0s_A 76 LDIYVDGADEINPQKMMIKGGGAALTREKIVAALAKKFICIVDSSKQVDVLG-STFPLPVEVIPMARSQVGRKLAAL--- 151 (219)
T ss_dssp EEEEEECCSEECTTSCEECCTTSCHHHHHHHHHHEEEEEEEEEGGGBCSSTT-SSSCEEEEECGGGHHHHHHHHHHT---
T ss_pred CCEEEECcCeECCCCCeecCHHHHHHHHHHHHHhcCcEEEEEeCcHHhhccC-CCCCEEEEECcchHHHHHHHHHHc---
Confidence 9999999999999999999999999999999999999999999999999996 468999999999999999999997
Q ss_pred cCCeeEEeecCCCCceEeCCCCEEEEeeCCCCCCChHHHHHHhcCCCcEEeeeccc-ccccEEEEEcCCCeEEe
Q 023993 200 LGCEAKLREGENGKPYITDNFNYIIDLYFETPIKDGVSAGTEIGKLEGVVEHGLFL-DMATAVIIAGKTGVEVK 272 (274)
Q Consensus 200 ~g~~~~lR~~~~~gp~vTdnGN~IlD~~f~~~i~d~~~l~~~l~~ipGVVe~GlF~-~~a~~viv~~~~gv~~~ 272 (274)
|+++.+|+ | ++|||||||+||+|+. +.||.+++++|++||||||||||. ++++.+++|+++|++++
T Consensus 152 -g~~~~~R~----g-~vTdnGn~IlD~~~~~-i~~p~~l~~~l~~i~GVve~GlF~~~~a~~~~~~~~~g~~~~ 218 (219)
T 1m0s_A 152 -GGSPEYRE----G-VVTDNGNVILDVHNFS-ILNPVEIEKELNNVAGVVTNGIFALRGADVVIVGTPEGAKVI 218 (219)
T ss_dssp -TCEEEECT----T-CCCTTSCEEEEEESCC-CSCHHHHHHHHHTSTTEEEESEECTTCCSEEEEEETTEEEEE
T ss_pred -CCCcEeeC----c-eEcCCCCEEEEecCCC-CCCHHHHHHHHhcCCCeeeeccEecCCCCEEEEEeCCCeEEc
Confidence 89999994 4 9999999999999985 999999999999999999999999 99999999999998875
No 12
>1uj6_A Ribose 5-phosphate isomerase; enzyme-inhibitor complex, riken structural genomics/proteomi initiative, RSGI, structural genomics; HET: A5P; 1.74A {Thermus thermophilus} SCOP: c.124.1.4 d.58.40.1 PDB: 1uj5_A* 1uj4_A*
Probab=100.00 E-value=2.4e-64 Score=451.94 Aligned_cols=221 Identities=47% Similarity=0.715 Sum_probs=204.1
Q ss_pred ChHHHHHHHHHHHHhcCCCCCEEEECcChHHHHHHHHHhchhhcCCCCCeEEECCcHHHHHHHHhCCCcEEEcCCCCccc
Q 023993 42 TQDDLKKLAADKAVDYVKSGMALGLGTGSTAAFVVDRIGQLLKTGELRDIVGIPTSKRTEEQAKSLNIPLTTLDDHPSLD 121 (274)
Q Consensus 42 ~~~~~K~~iA~~A~~~I~dg~vIgLGsGSTv~~l~~~L~~~~~~~~l~~itvVT~S~~ta~~l~~~gi~vi~l~~~~~iD 121 (274)
.+.++|++||++|+++|+|||+||||+|||+.+++++|+++.+++++.++|+||||++++.+|.+.|++++.+.. .++|
T Consensus 4 ~~~~~K~~IA~~Aa~~I~dg~~I~LgsGST~~~~~~~L~~~~~~~~l~~itvVTnS~~~a~~l~~~gi~v~~l~~-~~~D 82 (227)
T 1uj6_A 4 PLESYKKEAAHAAIAYVQDGMVVGLGTGSTARYAVLELARRLREGELKGVVGVPTSRATEELAKREGIPLVDLPP-EGVD 82 (227)
T ss_dssp TTHHHHHHHHHHHHTTCCTTCEEEECCSHHHHHHHHHHHHHHHTTSSCSCEEEESSHHHHHHHHHTTCCBCCCCT-TCEE
T ss_pred chHHHHHHHHHHHHHHCCCCCEEEEcCCHHHHHHHHHHhhhhhhcCCCCEEEECCcHHHHHHHHhCCCeEEEcCC-CcCC
Confidence 467899999999999999999999999999999999998765444443399999999999999989999999977 7999
Q ss_pred EEEEccCcccCCCCcccCcchhHHHHHHHHHhcCcEEEEEcCCcccccCCCCcccccEEEecccHHHHHHHHHHhHhhcC
Q 023993 122 LAIDGADEVDPELNLVKGRGGALLREKMVEAASKSFVVVADESKLVSGLGGSKLAMPVEVVQFCWKFNLVRLQDLFRELG 201 (274)
Q Consensus 122 ~afdGaD~Vd~~~~~ikg~gga~l~EKila~~S~~~IvLaD~sK~~~~Lg~~~~plPvEV~p~a~~~v~~~l~~l~~~~g 201 (274)
+||||||+||+++.+++++++|+++||+++++|+++|+|+|+|||+++|| +|||||||+||+|.+|.++|+++ |
T Consensus 83 ~af~Gadgvd~~~~~~~~~g~a~~kekiva~~a~~~ivlaD~sK~~~~lg--~~~lPvEV~p~~~~~v~~~l~~~----g 156 (227)
T 1uj6_A 83 LAIDGADEIAPGLALIKGMGGALLREKIVERVAKEFIVIADHTKKVPVLG--RGPVPVEIVPFGYRATLKAIADL----G 156 (227)
T ss_dssp EEEECCSEEEGGGEEECCTTSCHHHHHHHHHTEEEEEEEEEGGGBCSSSC--SSCEEEEECSTTHHHHHHHHHTT----T
T ss_pred EEEECCCccCccccEECCHHHHHHHHHHHHhccCCEEEEEEcchhccccC--CCceeEEECcCHHHHHHHHHHhh----C
Confidence 99999999999887799999999999999988999999999999999997 79999999999999999999997 8
Q ss_pred CeeEEeecCCCCceEeCCCCEEEEeeCCCCCCChHHHHHHhcCCCcEEeeecccccccEEEEEcCCC-eEE
Q 023993 202 CEAKLREGENGKPYITDNFNYIIDLYFETPIKDGVSAGTEIGKLEGVVEHGLFLDMATAVIIAGKTG-VEV 271 (274)
Q Consensus 202 ~~~~lR~~~~~gp~vTdnGN~IlD~~f~~~i~d~~~l~~~l~~ipGVVe~GlF~~~a~~viv~~~~g-v~~ 271 (274)
+++.+|+.+ ++||+|||||||+||+|+. +.||.+++++|++||||||||||.++++.+++|+++| +++
T Consensus 157 ~~~~~R~~~-~~~~vTdnGn~ilD~~~~~-i~~~~~l~~~l~~i~GVve~GlF~~~a~~~~~~~~~g~~~~ 225 (227)
T 1uj6_A 157 GEPELRMDG-DEFYFTDGGHLIADCRFGP-IGDPLGLHRALLEIPGVVETGLFVGMATRALVAGPFGVEEL 225 (227)
T ss_dssp CCEEECEET-TEECCCTTSCEEEEECCCS-CSCHHHHHHHHHTSTTEEEESEECSCCSEEEEEETTEEEEE
T ss_pred CCeEEEecC-CCCEEcCCCCEEEEeeCCC-CCCHHHHHHHHhCCCCcceeccEecCCCEEEEEeCCCeEEe
Confidence 999999832 4899999999999999985 9999999999999999999999999999999999999 443
No 13
>1o8b_A Ribose 5-phosphate isomerase; RPIA, PSI, protein ST initiative, MCSG, midwest center for structural genomics; HET: ABF; 1.25A {Escherichia coli} SCOP: c.124.1.4 d.58.40.1 PDB: 1lkz_A 1ks2_A* 3enq_A 3env_A* 3enw_A*
Probab=100.00 E-value=8.7e-65 Score=452.57 Aligned_cols=217 Identities=37% Similarity=0.574 Sum_probs=159.2
Q ss_pred CChHHHHHHHHHHHHhcCCCCCEEEECcChHHHHHHHHHhchhhcCCCCCeEE-ECCcHHHHHHHHhCCCcEEEcCCCCc
Q 023993 41 LTQDDLKKLAADKAVDYVKSGMALGLGTGSTAAFVVDRIGQLLKTGELRDIVG-IPTSKRTEEQAKSLNIPLTTLDDHPS 119 (274)
Q Consensus 41 ~~~~~~K~~iA~~A~~~I~dg~vIgLGsGSTv~~l~~~L~~~~~~~~l~~itv-VT~S~~ta~~l~~~gi~vi~l~~~~~ 119 (274)
|+++++|++||++|+++|+|||+||||+|||+.+++++|+++ . .++|+ ||||++++.+|.+.|++++.++...+
T Consensus 1 m~~~~~K~~IA~~Aa~lI~dg~~I~LdsGST~~~la~~L~~~--~---~~itv~VTnS~~~a~~l~~~gi~vi~l~~~~~ 75 (219)
T 1o8b_A 1 MTQDELKKAVGWAALQYVQPGTIVGVGTGSTAAHFIDALGTM--K---GQIEGAVSSSDASTEKLKSLGIHVFDLNEVDS 75 (219)
T ss_dssp ----------------------CEEECCSCC--------------------CCEEESCCC------------CCGGGCSC
T ss_pred CCcHHHHHHHHHHHHHhCCCCCEEEEcChHHHHHHHHHHhcc--C---CCEEEEECCcHHHHHHHHhCCCeEEEeCccCc
Confidence 567789999999999999999999999999999999999864 1 16999 99999999999888999999988789
Q ss_pred ccEEEEccCcccCCCCcccCcchhHHHHHHHHHhcCcEEEEEcCCcccccCCCCcccccEEEecccHHHHHHHHHHhHhh
Q 023993 120 LDLAIDGADEVDPELNLVKGRGGALLREKMVEAASKSFVVVADESKLVSGLGGSKLAMPVEVVQFCWKFNLVRLQDLFRE 199 (274)
Q Consensus 120 iD~afdGaD~Vd~~~~~ikg~gga~l~EKila~~S~~~IvLaD~sK~~~~Lg~~~~plPvEV~p~a~~~v~~~l~~l~~~ 199 (274)
+|+||||||+||+++++++++++|+++||+++++|+++|+|+|+|||+++|| +|||||||+||+|.+|+++|+++
T Consensus 76 ~D~af~Gadgid~~~~~~~~~~~a~~kekiv~~~A~~~ivlaD~SK~~~~lg--~~~lPvEV~p~~~~~v~~~l~~l--- 150 (219)
T 1o8b_A 76 LGIYVDGADEINGHMQMIKGGGAALTREKIIASVAEKFICIADASKQVDILG--KFPLPVEVIPMARSAVARQLVKL--- 150 (219)
T ss_dssp EEEEEECCSEECTTSCEECCCCC-HHHHHHHHHHEEEEEEEEEGGGBCSSBT--SSCEEEEECGGGHHHHHHHHHHT---
T ss_pred CCEEEECcceECCCCCeecCHHHHHHHHHHHHHhcCcEEEEEeCcccccccC--CCcEEEEEChhHHHHHHHHHHHc---
Confidence 9999999999999999999999999999999999999999999999999997 79999999999999999999997
Q ss_pred cCCeeEEeecCCCCceEeCCCCEEEEeeCCCCCCChHHHHHHhcCCCcEEeeeccc-ccccEEEEEcCCCeEEecC
Q 023993 200 LGCEAKLREGENGKPYITDNFNYIIDLYFETPIKDGVSAGTEIGKLEGVVEHGLFL-DMATAVIIAGKTGVEVKSK 274 (274)
Q Consensus 200 ~g~~~~lR~~~~~gp~vTdnGN~IlD~~f~~~i~d~~~l~~~l~~ipGVVe~GlF~-~~a~~viv~~~~gv~~~~~ 274 (274)
|+++.+|+ | |+|||||||+||+|+. +.||.+++++|++||||||||||. ++||.+++|+++|++++.|
T Consensus 151 -g~~~~~R~----g-~vTdnGn~IlD~~~~~-i~~p~~l~~~l~~i~GVve~GlF~~~~a~~~~~~~~~g~~~~~~ 219 (219)
T 1o8b_A 151 -GGRPEYRQ----G-VVTDNGNVILDVHGME-ILDPIAMENAINAIPGVVTVGLFANRGADVALIGTPDGVKTIVK 219 (219)
T ss_dssp -TCEEEECT----T-CCCTTSCEEEEEESCC-BSCHHHHHHHHHTSTTEEEESEECSSCCSEEEEEETTEEEEEC-
T ss_pred -CCCcEeeC----c-eEeCCCCEEEEeeCCC-CCCHHHHHHHHhcCCCcceeeeEecCCCCEEEEEeCCCeEEecC
Confidence 89999994 4 9999999999999975 999999999999999999999999 9999999999999998876
No 14
>1vb5_A Translation initiation factor EIF-2B; 2.20A {Pyrococcus horikoshii} SCOP: c.124.1.5
Probab=99.27 E-value=3.1e-11 Score=110.39 Aligned_cols=133 Identities=17% Similarity=0.151 Sum_probs=108.1
Q ss_pred HHHHHHHHHHHHhcCCCCCEEE-ECcChHHHHHHHHHhchhhcCCCCCeEEEC-C------cHHHHHHHHhCCCcEEEcC
Q 023993 44 DDLKKLAADKAVDYVKSGMALG-LGTGSTAAFVVDRIGQLLKTGELRDIVGIP-T------SKRTEEQAKSLNIPLTTLD 115 (274)
Q Consensus 44 ~~~K~~iA~~A~~~I~dg~vIg-LGsGSTv~~l~~~L~~~~~~~~l~~itvVT-~------S~~ta~~l~~~gi~vi~l~ 115 (274)
.+.|++||+.|+++|+||++|. ++.|+|+..+++.+.++ | ++++|++ + +..++.+|.+.||+++.+.
T Consensus 93 ~~~~~~Ia~~a~~~I~~g~~IlT~~~s~Tv~~~l~~a~~~---~--~~~~V~v~etrP~~qG~~~a~~L~~~gI~vtli~ 167 (276)
T 1vb5_A 93 EEAKRELASIGAQLIDDGDVIITHSFSSTVLEIIRTAKER---K--KRFKVILTESSPDYEGLHLARELEFSGIEFEVIT 167 (276)
T ss_dssp HHHHHHHHHHHHHHCCTTEEEECCSCCHHHHHHHHHHHHT---T--CCEEEEEECCTTTTHHHHHHHHHHHTTCCEEEEC
T ss_pred HHHHHHHHHHHHHHccCCCEEEEeCCChHHHHHHHHHHHc---C--CeEEEEEeCCCcchhhHHHHHHHHHCCCCEEEEc
Confidence 4678999999999999999999 99999999999988652 1 3688877 7 7788999988999998875
Q ss_pred CC------CcccEEEEccCcccCCCCcccCcchhHHHHHHHHHhcCcEEEEEcCCcccccCCCCcccccEEEecc
Q 023993 116 DH------PSLDLAIDGADEVDPELNLVKGRGGALLREKMVEAASKSFVVVADESKLVSGLGGSKLAMPVEVVQF 184 (274)
Q Consensus 116 ~~------~~iD~afdGaD~Vd~~~~~ikg~gga~l~EKila~~S~~~IvLaD~sK~~~~Lg~~~~plPvEV~p~ 184 (274)
.. .++|++|.|||.|..++++..--|.+.+. ....+++..+|+++|++||..... ...+|+|--+.
T Consensus 168 dsa~~~~m~~vd~vivGAd~i~~nG~v~nkiGt~~iA-~~A~~~~vp~~V~a~~~K~~~~~~--~~~i~iE~r~~ 239 (276)
T 1vb5_A 168 DAQMGLFCREASIAIVGADMITKDGYVVNKAGTYLLA-LACHENAIPFYVAAETYKFHPTLK--SGDVMLMERDL 239 (276)
T ss_dssp GGGHHHHHTTCSEEEECCSEECTTSCEEEETTHHHHH-HHHHHTTCCEEEECCGGGBCSSCC--GGGCCCCBCCC
T ss_pred HHHHHHHHccCCEEEEcccEEecCCCEeechhHHHHH-HHHHHcCCCEEEeccccccCcccC--ccccccccCCc
Confidence 42 48999999999999998885435666665 566778999999999999997631 34577777654
No 15
>3ecs_A Translation initiation factor EIF-2B subunit alpha; eukaryotic translation initiation factor 2balpha (EIF2balpha); 2.65A {Homo sapiens}
Probab=97.98 E-value=4.2e-05 Score=71.13 Aligned_cols=130 Identities=21% Similarity=0.238 Sum_probs=90.0
Q ss_pred HHHHHHHHHHhcCCCCCEEE-ECcChHHHHHHHHHhchhhcCCCCCeEEE--CC-----cHHHHHHHHhCCCcEEEcCCC
Q 023993 46 LKKLAADKAVDYVKSGMALG-LGTGSTAAFVVDRIGQLLKTGELRDIVGI--PT-----SKRTEEQAKSLNIPLTTLDDH 117 (274)
Q Consensus 46 ~K~~iA~~A~~~I~dg~vIg-LGsGSTv~~l~~~L~~~~~~~~l~~itvV--T~-----S~~ta~~l~~~gi~vi~l~~~ 117 (274)
.++.|++.++++|++|++|- .+.++|+..+++...+. | ++++|+ -+ ....+.+|.+.||++..+...
T Consensus 107 a~~~I~~~~~~~I~~g~~ILTh~~S~tv~~~l~~A~~~---g--k~~~V~v~EsrP~~qG~~la~~L~~~gI~vtli~Ds 181 (315)
T 3ecs_A 107 SRNKIADLCHTFIKDGATILTHAYSRVVLRVLEAAVAA---K--KRFSVYVTESQPDLSGKKMAKALCHLNVPVTVVLDA 181 (315)
T ss_dssp HHHHHHHHHGGGCCTTEEEEECSCCHHHHHHHHHHHTT---T--CCEEEEEECCTTTTHHHHHHHHHHTTTCCEEEECGG
T ss_pred HHHHHHHHHHHHcCCCCEEEEcCCcHHHHHHHHHHHHc---C--CeEEEEEecCCCcchHHHHHHHHHHcCCCEEEEehh
Confidence 36789999999999999775 57778998888766542 2 234443 22 234677888899998876431
Q ss_pred ------CcccEEEEccCcccCCCCcccCcchhHHHHHHHHHhcCcEEEEEcCCcccccCCCCcccccEEE
Q 023993 118 ------PSLDLAIDGADEVDPELNLVKGRGGALLREKMVEAASKSFVVVADESKLVSGLGGSKLAMPVEV 181 (274)
Q Consensus 118 ------~~iD~afdGaD~Vd~~~~~ikg~gga~l~EKila~~S~~~IvLaD~sK~~~~Lg~~~~plPvEV 181 (274)
.++|++|.|||.|..+++++.--|...+- -...+....+|++++..||.....-....+|+|.
T Consensus 182 a~~~~m~~vd~VivGAd~i~~nG~v~nkiGT~~iA-l~Ak~~~vP~~V~a~~~K~~~~~~~~~~~i~~e~ 250 (315)
T 3ecs_A 182 AVGYIMEKADLVIVGAEGVVENGGIINKIGTNQMA-VCAKAQNKPFYVVAESFKFVRLFPLNQQDVPDKF 250 (315)
T ss_dssp GHHHHGGGCSEEEEECSEECTTSCEEEETTHHHHH-HHHHHTTCCEEEECCGGGBCSCCCSSGGGSCGGG
T ss_pred HHHHHHHhCCEEEECceEEecCCCeeehhhhHHHH-HHHHHhCCCEEEEeccccccccCCCCcccCCccc
Confidence 47999999999999998885433443333 2344567899999999999875311123455554
No 16
>3a11_A Translation initiation factor EIF-2B, delta subun; isomerase, hexamer, rossmann fold; 2.50A {Thermococcus kodakaraensis} PDB: 3a9c_A* 3vm6_A*
Probab=97.91 E-value=0.00012 Score=68.60 Aligned_cols=133 Identities=16% Similarity=0.128 Sum_probs=92.5
Q ss_pred HHHHHHHHHHhcCCCCCEEE-ECcChHHHHHHHHHhchhhcCCCCCeEEECCc-----HHHHHHHHhCCCcEEEcCC---
Q 023993 46 LKKLAADKAVDYVKSGMALG-LGTGSTAAFVVDRIGQLLKTGELRDIVGIPTS-----KRTEEQAKSLNIPLTTLDD--- 116 (274)
Q Consensus 46 ~K~~iA~~A~~~I~dg~vIg-LGsGSTv~~l~~~L~~~~~~~~l~~itvVT~S-----~~ta~~l~~~gi~vi~l~~--- 116 (274)
..+.|++.++++|++|++|- .+.++|+..+++...++ |....+.+.-+- ..++.+|.+.||++..+.+
T Consensus 127 ~~~~I~~~g~~~I~~g~~ILTh~~S~tvl~~l~~A~~~---gk~~~V~v~EtRP~~qGrltA~eL~~~GI~vtlI~Dsa~ 203 (338)
T 3a11_A 127 ALERIGEFGAKRIEDGDVIMTHCHSKAAISVMKTAWEQ---GKDIKVIVTETRPKWQGKITAKELASYGIPVIYVVDSAA 203 (338)
T ss_dssp HHHHHHHHHHTTCCTTCEEEECSCCHHHHHHHHHHHHT---TCCCEEEEECCTTTTHHHHHHHHHHHTTCCEEEECGGGT
T ss_pred HHHHHHHHHHHHhCCCCEEEEeCCcHHHHHHHHHHHHC---CCeEEEEEeCCCCchhhHHHHHHHHhCCCCEEEEehHHH
Confidence 35669999999999999776 57778998888876543 322233333322 2568888999999887642
Q ss_pred ---CCcccEEEEccCcccCCCCcccCcchhHHHHHHHHHhcCcEEEEEcCCcccccCCCCcccccEEEec
Q 023993 117 ---HPSLDLAIDGADEVDPELNLVKGRGGALLREKMVEAASKSFVVVADESKLVSGLGGSKLAMPVEVVQ 183 (274)
Q Consensus 117 ---~~~iD~afdGaD~Vd~~~~~ikg~gga~l~EKila~~S~~~IvLaD~sK~~~~Lg~~~~plPvEV~p 183 (274)
...+|++|.|||.|-.+++++.--|...+- -+..+...-||+++..+||..... ....+|+|--+
T Consensus 204 ~~~M~~Vd~VivGAd~V~anG~v~NKiGT~~lA-l~Ak~~~vPfyV~a~~~k~d~~~~-~g~~i~iE~r~ 271 (338)
T 3a11_A 204 RHYMKMTDKVVMGADSITVNGAVINKIGTALIA-LTAKEHRVWTMIAAETYKFHPETM-LGQLVEIEMRD 271 (338)
T ss_dssp TTTGGGCSEEEECCSEECTTSCEEEETTHHHHH-HHHHHTTCEEEEECCGGGBCSCCS-SSSCCCCCBCC
T ss_pred HHHHHhCCEEEECccEEecCCCEeecccHHHHH-HHHHHcCCCEEEecccceecccCC-CCcccccccCC
Confidence 147999999999999998875333433332 233456778999999999997742 13457787654
No 17
>2w48_A Sorbitol operon regulator; SORC, activator, repressor, DNA-binding, transcription, transcription regulator, transcription regulation; 3.20A {Klebsiella pneumoniae}
Probab=97.85 E-value=3.2e-05 Score=70.89 Aligned_cols=85 Identities=18% Similarity=0.223 Sum_probs=61.0
Q ss_pred HHHHHHHHHHHHhc----CCCCCEEEECcChHHHHHHHHHhchhhcCCCCCeEEECCc-------------HHHHHHH-H
Q 023993 44 DDLKKLAADKAVDY----VKSGMALGLGTGSTAAFVVDRIGQLLKTGELRDIVGIPTS-------------KRTEEQA-K 105 (274)
Q Consensus 44 ~~~K~~iA~~A~~~----I~dg~vIgLGsGSTv~~l~~~L~~~~~~~~l~~itvVT~S-------------~~ta~~l-~ 105 (274)
.++|+.+|++|+++ |++|++|||++|||+..++++|.... ..+++++|+.. ..++..+ .
T Consensus 89 ~~~k~~ia~~AA~~l~~~i~~~~~igl~~GsT~~~~~~~L~~~~---~~~~~~vv~l~ggl~~~~~~~~~~~~i~~~la~ 165 (315)
T 2w48_A 89 EEQLSAMGQHGALLVDRLLEPGDIIGFSWGRAVRSLVENLPQRS---QSRQVICVPIIGGPSGKLESRYHVNTLTYGAAA 165 (315)
T ss_dssp CHHHHHHHHHHHHHHHHHCCTTCEEEECCSHHHHHHHTTSCCCS---SCCCCEEEESBCBCTTSSCGGGCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHhCCCCCEEEECChHHHHHHHHhhcccc---CCCCcEEEEcCCCCCCCCccccCHHHHHHHHHH
Confidence 35799999999997 99999999999999999999996421 12479999952 2344444 4
Q ss_pred hCCCcEEEcC---C----------------------CCcccEEEEccCccc
Q 023993 106 SLNIPLTTLD---D----------------------HPSLDLAIDGADEVD 131 (274)
Q Consensus 106 ~~gi~vi~l~---~----------------------~~~iD~afdGaD~Vd 131 (274)
..|.+...+. . ..++|++|.|+.+..
T Consensus 166 ~~~~~~~~l~~P~~~~~~~~~~~l~~~~~~~~~l~~~~~~DiailGIGg~~ 216 (315)
T 2w48_A 166 RLKAESHLADFPALLDNPLIRNGIMQSQHFKTISSYWDSLDVALVGIGSPA 216 (315)
T ss_dssp HTTCEECCCCSBSBCSSHHHHHHHHHSHHHHHHHHHHTTCSEEEECCBCTT
T ss_pred HHCCceeEeeCCcccCCHHHHHHHHhChHHHHHHHHHhcCCEEEEccCcch
Confidence 5566543221 0 137999999999543
No 18
>1poi_B Glutaconate coenzyme A-transferase; COA, glutamate, protein fermentation; 2.50A {Acidaminococcus fermentans} SCOP: c.124.1.3
Probab=97.71 E-value=7.1e-05 Score=67.73 Aligned_cols=113 Identities=18% Similarity=0.207 Sum_probs=73.2
Q ss_pred HHHHHHHHHHhcCCCCCEEEECcChHHHHHHHHHhchhhcCCCCCeEEECCcHHH-------------HHHHHhCCCcEE
Q 023993 46 LKKLAADKAVDYVKSGMALGLGTGSTAAFVVDRIGQLLKTGELRDIVGIPTSKRT-------------EEQAKSLNIPLT 112 (274)
Q Consensus 46 ~K~~iA~~A~~~I~dg~vIgLGsGSTv~~l~~~L~~~~~~~~l~~itvVT~S~~t-------------a~~l~~~gi~vi 112 (274)
.++.||+.|++.|+||+++.+|.| .-..++.++.+.- .+++++.+.+-.+ .... .+-.-+
T Consensus 7 ~~e~Ia~~aA~~i~dG~~v~lGiG-iP~~va~~~~~~~----~~~l~l~~E~G~lg~~p~~~~~~~~d~~~~--~~a~~~ 79 (260)
T 1poi_B 7 NKEMQAVTIAKQIKNGQVVTVGTG-LPLIGASVAKRVY----APDCHIIVESGLMDCSPVEVPRSVGDLRFM--AHCGCI 79 (260)
T ss_dssp HHHHHHHHHHTTCCTTCEEECCSS-HHHHHHHHHHHTT----CTTCEEEETTTEEEECCSSCCSSTTCHHHH--TSEEEE
T ss_pred HHHHHHHHHHHhCCCCCEEEeCCC-HHHHHHHHHHHhc----CCCEEEEEeCceecCcccCcccCccCCCcE--eehhhh
Confidence 366899999999999999999999 6677777776521 1466666533100 0000 000000
Q ss_pred -------Ec-----CCCCcccEEEEccCcccCCCCc--------------ccCcchhHHHHHHHHHhcCcEEEEEcCC--
Q 023993 113 -------TL-----DDHPSLDLAIDGADEVDPELNL--------------VKGRGGALLREKMVEAASKSFVVVADES-- 164 (274)
Q Consensus 113 -------~l-----~~~~~iD~afdGaD~Vd~~~~~--------------ikg~gga~l~EKila~~S~~~IvLaD~s-- 164 (274)
.+ -...++|++|.|+-+||..+++ +.|.||+.- ++..|+++|++ +|+
T Consensus 80 ~~~~~~fd~~~~~~~~~g~~Dv~ilGa~qVD~~Gnvn~s~iG~~~~p~~~~~G~GGa~D----~~~~A~~~iv~-~h~~r 154 (260)
T 1poi_B 80 WPNVRFVGFEINEYLHKANRLIAFIGGAQIDPYGNVNSTSIGDYHHPKTRFTGSGGANG----IATYSNTIIMM-QHEKR 154 (260)
T ss_dssp CCHHHHHHHHHHHHHHTCCCEEEEECCSEECTTCCEECSEEECSSSEEEECCCCTTHHH----HHHHSCEEEEC-CCCTT
T ss_pred cCHHHHhcccchhhhhcCCccEEEeChHHhCCCCCccccccCCcCCCceEeecccchHH----HHhCCCEEEEE-ECCCC
Confidence 01 0124789999999999986543 345566552 45678898888 887
Q ss_pred cccccC
Q 023993 165 KLVSGL 170 (274)
Q Consensus 165 K~~~~L 170 (274)
||++++
T Consensus 155 k~V~~v 160 (260)
T 1poi_B 155 RFMNKI 160 (260)
T ss_dssp TBCSSC
T ss_pred eecccC
Confidence 788776
No 19
>2o0m_A Transcriptional regulator, SORC family; structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 1.60A {Enterococcus faecalis} SCOP: c.124.1.8
Probab=97.66 E-value=2.7e-05 Score=72.39 Aligned_cols=65 Identities=15% Similarity=0.157 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHhc----CCC-CCEEEECcChHHHHHHHHHhchhhcCCCCCeEEEC-----------CcHHHHHHHH-hC
Q 023993 45 DLKKLAADKAVDY----VKS-GMALGLGTGSTAAFVVDRIGQLLKTGELRDIVGIP-----------TSKRTEEQAK-SL 107 (274)
Q Consensus 45 ~~K~~iA~~A~~~----I~d-g~vIgLGsGSTv~~l~~~L~~~~~~~~l~~itvVT-----------~S~~ta~~l~-~~ 107 (274)
..|+.+|++|+++ |++ |++|||++|||+..++++|.... -..+++++|| ++..++..+. ..
T Consensus 122 ~~k~~ia~~AA~~l~~~i~~~~~~igl~~GsT~~~~~~~L~~~~--~~~~~v~vv~l~ggl~~~~~~~~~~i~~~la~~~ 199 (345)
T 2o0m_A 122 KVLSDFGDVLTNTLNLLLPNGENTIAVMGGTTMAMVAENMGSLE--TEKRHNLFVPARGGIGEAVSVQANSISAVMANKT 199 (345)
T ss_dssp HHHHHHHHHHHHHHHHHCCSEEEEEEECCSHHHHHHHHTCCCCC--CSSEEEEEEESBSCCCCCGGGSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCcCCCEEEECCcHHHHHHHHHhhhcc--CCCCCcEEEEcCCcCCCCcccCHHHHHHHHHHHh
Confidence 4799999999996 999 99999999999999999996420 0013799999 6777777654 43
Q ss_pred CCcE
Q 023993 108 NIPL 111 (274)
Q Consensus 108 gi~v 111 (274)
|.+.
T Consensus 200 ~~~~ 203 (345)
T 2o0m_A 200 GGNY 203 (345)
T ss_dssp TCEE
T ss_pred CCce
Confidence 6543
No 20
>1t5o_A EIF2BD, translation initiation factor EIF2B, subunit DELT; subunit delta, structural GEN PSI, protein structure initiative; 1.90A {Archaeoglobus fulgidus} SCOP: c.124.1.5
Probab=97.60 E-value=0.00039 Score=65.48 Aligned_cols=130 Identities=17% Similarity=0.129 Sum_probs=87.0
Q ss_pred HHHHHHHHHHhcCCCCCEEEE----------CcChHHHHHHHHHhchhhcCCCCCeEEECCcH------HHHHHHHhCCC
Q 023993 46 LKKLAADKAVDYVKSGMALGL----------GTGSTAAFVVDRIGQLLKTGELRDIVGIPTSK------RTEEQAKSLNI 109 (274)
Q Consensus 46 ~K~~iA~~A~~~I~dg~vIgL----------GsGSTv~~l~~~L~~~~~~~~l~~itvVT~S~------~ta~~l~~~gi 109 (274)
..+.|++.++++|++|++|-- |.| |+..+++...++ |....+.+.-+-. .++.+|.+.||
T Consensus 132 ~~~~I~~~g~~~I~~g~~ILThcnsg~lat~g~g-tal~~l~~A~~~---gk~~~V~v~EtRP~~qG~rlta~eL~~~GI 207 (351)
T 1t5o_A 132 RNRKMGEYGAELLEDGDVVLTYCNAGRLATVDWG-TALGVVRSAVEQ---GKEIRVIACETRPLNQGSRLTCWELMEDGI 207 (351)
T ss_dssp HHHHHHHHHHTTCCTTCEEEECSCCSSSSSSSSC-SHHHHHHHHHHT---TCCCEEEEECCTTTTHHHHTHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhCCCCEEEEecCCccccccCCC-hHHHHHHHHHHC---CCEEEEEEeCCCcccccHHHHHHHHHhCCC
Confidence 456699999999999999887 334 677777766542 3222333332221 36778889999
Q ss_pred cEEEcCCC--------CcccEEEEccCcccCCCCcccCcchhHHHHHHHHHhcCcEEEEEcCCcccccCCCCcccccEEE
Q 023993 110 PLTTLDDH--------PSLDLAIDGADEVDPELNLVKGRGGALLREKMVEAASKSFVVVADESKLVSGLGGSKLAMPVEV 181 (274)
Q Consensus 110 ~vi~l~~~--------~~iD~afdGaD~Vd~~~~~ikg~gga~l~EKila~~S~~~IvLaD~sK~~~~Lg~~~~plPvEV 181 (274)
++..+.+. ..+|++|.|||.|-.++ +..--|...+- -+..+...-||+++..+||... . ....+|+|-
T Consensus 208 ~vtlI~Dsa~~~~M~~~~Vd~VivGAd~V~aNG-v~NKiGT~~lA-l~Ak~~~vPfyV~a~~~k~d~~-~-~g~~i~iEe 283 (351)
T 1t5o_A 208 DVTLITDSMVGIVMQKGMVDKVIVGADRIVRDA-VFNKIGTYTVS-VVAKHHNIPFYVAAPKATFDWE-R-TAKDVVIEE 283 (351)
T ss_dssp CEEEECGGGHHHHHHTTCCSEEEECCSEEETTE-EEEETTHHHHH-HHHHHTTCCEEEECCGGGBCTT-C-CGGGCCCCB
T ss_pred CEEEEehhHHHHHhhcCCCCEEEECccchhhcC-cccccCHHHHH-HHHHHcCCCEEEeCccceeccc-c-CCCcccccc
Confidence 98876431 24999999999998887 53222333322 2334567789999999999876 3 235688886
Q ss_pred ec
Q 023993 182 VQ 183 (274)
Q Consensus 182 ~p 183 (274)
-+
T Consensus 284 r~ 285 (351)
T 1t5o_A 284 RP 285 (351)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 21
>2yvk_A Methylthioribose-1-phosphate isomerase; methionine salvage pathway,; HET: MRU; 2.40A {Bacillus subtilis} PDB: 2yrf_A*
Probab=97.54 E-value=0.00035 Score=66.37 Aligned_cols=134 Identities=20% Similarity=0.141 Sum_probs=89.5
Q ss_pred HHHHHHHHHHHhcCCCCCEEEEC--cC-------hHHHHHHHHHhchhhcCCCCCeEEECCc------HHHHHHHHhCCC
Q 023993 45 DLKKLAADKAVDYVKSGMALGLG--TG-------STAAFVVDRIGQLLKTGELRDIVGIPTS------KRTEEQAKSLNI 109 (274)
Q Consensus 45 ~~K~~iA~~A~~~I~dg~vIgLG--sG-------STv~~l~~~L~~~~~~~~l~~itvVT~S------~~ta~~l~~~gi 109 (274)
+..+.|++.++++|++|++|--= || +|+..+++...++ |....+.+.-+- -.++.+|.+.||
T Consensus 158 ~~~~~I~~~g~~~I~~g~~ILThcnsg~Lat~g~gTal~~l~~A~~~---gk~~~V~v~EtRP~~qG~rltA~eL~~~GI 234 (374)
T 2yvk_A 158 ETCRLIGQNALQLFKKGDRIMTICNAGSIATSRYGTALAPFYLAKQK---DLGLHIYACETRPVLQGSRLTAWELMQGGI 234 (374)
T ss_dssp HHHHHHHHHHGGGCCTTCEEEECSCCSTTTSSSSCSTTHHHHHHHHT---TCCCEEEEECCTTTTHHHHTHHHHHHTTTC
T ss_pred HHHHHHHHHHHHHhCCCCEEEEecCCCccccCCCcHHHHHHHHHHHc---CCEEEEEEeCCCCccccHHHHHHHHHHcCC
Confidence 34566999999999999998872 22 3677777766542 322223333222 136778889999
Q ss_pred cEEEcCCC--------CcccEEEEccCcccCCCCcccCcchhHHHHHHHHHhcCcEEEEEcCCcccccCCCCcccccEEE
Q 023993 110 PLTTLDDH--------PSLDLAIDGADEVDPELNLVKGRGGALLREKMVEAASKSFVVVADESKLVSGLGGSKLAMPVEV 181 (274)
Q Consensus 110 ~vi~l~~~--------~~iD~afdGaD~Vd~~~~~ikg~gga~l~EKila~~S~~~IvLaD~sK~~~~Lg~~~~plPvEV 181 (274)
++..+.+. ..+|++|.|||.|-.+++++.--|...+- -+..+...-||+++..+||..... ....+|+|-
T Consensus 235 pvtlI~Dsa~~~~M~~~~Vd~ViVGAD~V~aNG~v~NKiGTy~lA-l~Ak~~~vPfyV~ap~~k~d~~~~-~g~~i~iEe 312 (374)
T 2yvk_A 235 DVTLITDSMAAHTMKEKQISAVIVGADRIAKNGDTANKIGTYGLA-ILANAFDIPFFVAAPLSTFDTKVK-CGADIPIEE 312 (374)
T ss_dssp EEEEECGGGHHHHHHHTTCCEEEECCSEEETTCCEEEETTHHHHH-HHHHHTTCCEEEECCGGGEETTCS-SGGGSCCCB
T ss_pred CEEEEehhHHHHHhhhcCCCEEEECccEEecCCCEEecccHHHHH-HHHHHcCCCEEEecccceeCccCC-Ccccccccc
Confidence 98876432 24999999999999998775333333332 233456678999999999987642 135688887
Q ss_pred ec
Q 023993 182 VQ 183 (274)
Q Consensus 182 ~p 183 (274)
-+
T Consensus 313 r~ 314 (374)
T 2yvk_A 313 RD 314 (374)
T ss_dssp CC
T ss_pred CC
Confidence 65
No 22
>1t9k_A Probable methylthioribose-1-phosphate isomerase; structural genomics, translation initiation factor, AIF-2B subunit, PSI; 2.60A {Thermotoga maritima} SCOP: c.124.1.5
Probab=97.48 E-value=0.00047 Score=64.83 Aligned_cols=132 Identities=19% Similarity=0.217 Sum_probs=89.6
Q ss_pred HHHHHHHHHHHhcCCCCCEEEE-C-cCh-------HHHHHHHHHhchhhcCCCCCeEEEC-Cc-------HHHHHHHHhC
Q 023993 45 DLKKLAADKAVDYVKSGMALGL-G-TGS-------TAAFVVDRIGQLLKTGELRDIVGIP-TS-------KRTEEQAKSL 107 (274)
Q Consensus 45 ~~K~~iA~~A~~~I~dg~vIgL-G-sGS-------Tv~~l~~~L~~~~~~~~l~~itvVT-~S-------~~ta~~l~~~ 107 (274)
+..+.|++.++++|++|++|-- + ||+ |+..+++...++ | ++++|+. -| -.++.+|.+.
T Consensus 133 ~~~~~I~~~g~~~I~~g~~ILThcns~~lat~~~gtvl~~l~~A~~~---g--k~~~V~v~EtRP~~qG~rlta~eL~~~ 207 (347)
T 1t9k_A 133 EVNKAIGKNGAQLIKDGSTILTHCNAGALATVDYGTALGVIRAAVES---G--KRIRVFADETRPYLQGARLTAWELMKD 207 (347)
T ss_dssp HHHHHHHHHHHTTSCTTEEEEECSCCSGGGSSSSCSHHHHHHHHHHT---T--CCEEEEEECCTTTTHHHHTHHHHHHTT
T ss_pred HHHHHHHHHHHHHhCCCCEEEEecCCCccccCCccHHHHHHHHHHHC---C--CeEEEEEeCCCCccccHHHHHHHHHhC
Confidence 3466799999999999998775 2 331 888777766542 2 2344432 21 1367788899
Q ss_pred CCcEEEcCCC--------CcccEEEEccCcccCCCCcccCcchhHHHHHHHHHhcCcEEEEEcCCcccccCCCCcccccE
Q 023993 108 NIPLTTLDDH--------PSLDLAIDGADEVDPELNLVKGRGGALLREKMVEAASKSFVVVADESKLVSGLGGSKLAMPV 179 (274)
Q Consensus 108 gi~vi~l~~~--------~~iD~afdGaD~Vd~~~~~ikg~gga~l~EKila~~S~~~IvLaD~sK~~~~Lg~~~~plPv 179 (274)
||++..+.+. ..+|++|.|||.|-.+++++.--|...+- -+..+...-||+++..+||..... ....+|+
T Consensus 208 GI~vtlI~Dsa~~~~M~~~~Vd~VivGAd~V~aNG~v~NKiGT~~lA-l~Ak~~~vPfyV~ap~~k~d~~~~-~g~~i~i 285 (347)
T 1t9k_A 208 GIEVYVITDNMAGWLMKRGLIDAVVVGADRIALNGDTANKIGTYSLA-VLAKRNNIPFYVAAPVSTIDPTIR-SGEEIPI 285 (347)
T ss_dssp TCEEEEECGGGHHHHHHTTCCSEEEECCSEEETTSCEEEETTHHHHH-HHHHHTTCCEEEECCGGGEETTCS-SGGGSCC
T ss_pred CCCEEEEehhHHHHHhhcCCCCEEEECccEEecCCCEEecccHHHHH-HHHHHcCCCEEEecccceeccccC-Ccccccc
Confidence 9998876431 24999999999999898775333333332 233456778999999999987642 1356888
Q ss_pred EEec
Q 023993 180 EVVQ 183 (274)
Q Consensus 180 EV~p 183 (274)
|--+
T Consensus 286 E~r~ 289 (347)
T 1t9k_A 286 EERR 289 (347)
T ss_dssp CBCC
T ss_pred ccCC
Confidence 7655
No 23
>2a0u_A Initiation factor 2B; SGPP, structural genomics, PSI, protein structure initiative eukaryotic initiation factor; 2.10A {Leishmania major} SCOP: c.124.1.5
Probab=97.47 E-value=0.00031 Score=66.90 Aligned_cols=129 Identities=17% Similarity=0.075 Sum_probs=88.9
Q ss_pred HHHHHHHHHhcCC--------CCCEEEE----------CcChHHHHHHHHHhchhhcCCCCCeEEECC-c-------HHH
Q 023993 47 KKLAADKAVDYVK--------SGMALGL----------GTGSTAAFVVDRIGQLLKTGELRDIVGIPT-S-------KRT 100 (274)
Q Consensus 47 K~~iA~~A~~~I~--------dg~vIgL----------GsGSTv~~l~~~L~~~~~~~~l~~itvVT~-S-------~~t 100 (274)
.+.|++.++++|+ +|++|-- |.| |+..+++...++ | ++++|+.. | -.+
T Consensus 156 ~~~I~~~g~~~I~~~~~~~~~~g~~ILThcnsg~Lat~g~g-Tal~~l~~A~~~---g--k~~~V~v~EtRP~~qGarlt 229 (383)
T 2a0u_A 156 NEGIMRHGAAHILAAAKAEGRDKVSILTICNTGALATSRYG-TALGVVRQLFYD---G--KLERVYACETRPWNQGARLT 229 (383)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCSSEEEEECSCCSTTTSSSSC-SHHHHHHHHHHT---T--CEEEEEEECCTTTTHHHHTH
T ss_pred HHHHHHHHHHHhhhhccccCCCCCEEEEecCCcchhcCCCc-hHHHHHHHHHHc---C--CeEEEEEeCCCCccchHHHH
Confidence 5568999999999 9998876 334 787777776543 2 23444322 1 136
Q ss_pred HHHHHhCCCcEEEcCCC--------CcccEEEEccCcccCCCCcccCcchhHHHHHHHHHhcCcEEEEEcCCcccccCCC
Q 023993 101 EEQAKSLNIPLTTLDDH--------PSLDLAIDGADEVDPELNLVKGRGGALLREKMVEAASKSFVVVADESKLVSGLGG 172 (274)
Q Consensus 101 a~~l~~~gi~vi~l~~~--------~~iD~afdGaD~Vd~~~~~ikg~gga~l~EKila~~S~~~IvLaD~sK~~~~Lg~ 172 (274)
+.+|.+.||++..+.+. ..+|++|.|||.|-.++++..--|...+- -+..+...-||+++..+||.....
T Consensus 230 A~eL~~~GIpvtlI~Dsa~~~~M~~~~Vd~ViVGAD~V~aNG~v~NKiGTy~lA-l~Ak~~~vPfyV~ap~~k~d~~~~- 307 (383)
T 2a0u_A 230 VYECVQEDIPCTLICDGAASSLMLNRKIDAVVVGADRICQNGDTANKIGTYNLA-VSAKFHGVKLYVAAPTTTLDVKTA- 307 (383)
T ss_dssp HHHHHHTTCCEEEECGGGHHHHHHHSCCCEEEECCSEECTTCCEEEETTHHHHH-HHHHHTTCCEEEECCGGGBCTTCC-
T ss_pred HHHHHHcCCCEEEEehhHHHHHhhcCCCCEEEECccEEecCCCEeecccHHHHH-HHHHHcCCCEEEeCCcceecCcCC-
Confidence 78889999998876532 24999999999999998775333333332 233456778999999999997742
Q ss_pred CcccccEEEec
Q 023993 173 SKLAMPVEVVQ 183 (274)
Q Consensus 173 ~~~plPvEV~p 183 (274)
....+|+|--+
T Consensus 308 ~g~~i~iEer~ 318 (383)
T 2a0u_A 308 SGNHVEIEERE 318 (383)
T ss_dssp SGGGSCCCBCC
T ss_pred CccccccccCC
Confidence 23568888655
No 24
>3d3u_A 4-hydroxybutyrate COA-transferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.80A {Porphyromonas gingivalis}
Probab=97.33 E-value=0.00061 Score=65.61 Aligned_cols=55 Identities=18% Similarity=0.198 Sum_probs=45.5
Q ss_pred ChHHHHHHHHHHHHhcCCCCCEEEECcChHHHHHHHHHhchhhcCCCCCeEEECCcHHHHH
Q 023993 42 TQDDLKKLAADKAVDYVKSGMALGLGTGSTAAFVVDRIGQLLKTGELRDIVGIPTSKRTEE 102 (274)
Q Consensus 42 ~~~~~K~~iA~~A~~~I~dg~vIgLGsGSTv~~l~~~L~~~~~~~~l~~itvVT~S~~ta~ 102 (274)
...+.+++||+.|+++|+||+++-+|.|++...++.+|.++ +++.+.|.-+.-..
T Consensus 191 ~~~~~~~~Ia~~~a~~i~dg~~lqlGiG~ip~av~~~l~~~------~~l~i~te~~~~~~ 245 (439)
T 3d3u_A 191 AGSDLELRIGQNCASLIKDGDTLQLGIGGIPDAVLRALEGH------KDLGIHTEMFTDGV 245 (439)
T ss_dssp -CCHHHHHHHHHHHTTCCTTCEEEECSSHHHHHHHHTTTTC------CSBEEECSCBCHHH
T ss_pred CCChHHHHHHHHHHHhcCCCCEEEeccchHHHHHHHHHhhC------CCceEEEEEecchh
Confidence 34577899999999999999999999999999999999875 57888777554433
No 25
>3rrl_A Succinyl-COA:3-ketoacid-coenzyme A transferase SU; MCSG,PSI-biology, structural genomics, midwest center for ST genomics; 2.29A {Helicobacter pylori}
Probab=97.31 E-value=0.00079 Score=59.99 Aligned_cols=112 Identities=19% Similarity=0.182 Sum_probs=73.9
Q ss_pred HHHHHHhcCCCCCEEEECc--C-hHHHHHHHHHhchhhcCCCCCeEEECCcH-----HHHHHHHhCC-------------
Q 023993 50 AADKAVDYVKSGMALGLGT--G-STAAFVVDRIGQLLKTGELRDIVGIPTSK-----RTEEQAKSLN------------- 108 (274)
Q Consensus 50 iA~~A~~~I~dg~vIgLGs--G-STv~~l~~~L~~~~~~~~l~~itvVT~S~-----~ta~~l~~~g------------- 108 (274)
-|++|+++|+|||+|++|+ | .+...+++.|.++ +.+++|++++|. .. ..|...|
T Consensus 10 sa~eAv~~IkdG~tV~~gGf~~~g~P~~li~aL~~~----~~kdLtli~~~~g~~~~g~-~~L~~~G~v~r~i~s~~g~~ 84 (235)
T 3rrl_A 10 DLDKALSALKDGDTILVGGFGLCGIPEYAIDYIYKK----GIKDLIVVSNNCGVDDFGL-GILLEKKQIKKIIASYVGEN 84 (235)
T ss_dssp STHHHHTTCCTTCEEEECCBTTBTCCHHHHHHHHHH----TCCSEEEECSCCCCSSSGG-GGGGTTTCEEEEEESCCCSC
T ss_pred CHHHHHhhCCCCCEEEECCcCccCCHHHHHHHHHhc----CCCcEEEEEcCCCCCCcCH-HHHHhCCCeeEEEeccccCC
Confidence 3677889999999999996 2 3557788888765 246999999853 11 1122222
Q ss_pred -----------CcEEEcC--------------------------------------C-------CCcccEEEEccCcccC
Q 023993 109 -----------IPLTTLD--------------------------------------D-------HPSLDLAIDGADEVDP 132 (274)
Q Consensus 109 -----------i~vi~l~--------------------------------------~-------~~~iD~afdGaD~Vd~ 132 (274)
+++.... + ..++|+||..+...|.
T Consensus 85 ~~~~~~~~~G~ie~~~~pqg~la~~~rag~~G~P~~~t~~glgT~v~~gk~~~~~~G~~~l~~~a~~~DvAli~a~~aD~ 164 (235)
T 3rrl_A 85 KIFESQMLNGEIEVVLTPQGTLAENLHAGGAGIPAYYTPTGVGTLIAQGKESREFNGKEYILERAITGDYGLIKAYKSDT 164 (235)
T ss_dssp HHHHHHHHHTSSEEEECCHHHHHHHHHHHHHTCCEEEESTTTTSGGGTTCCEEEETTEEEEEEECCCEEEEEEECSEEET
T ss_pred HHHHHHHHcCCeEEEECCHHHHHHHHHHHhCCCCEEEeccccCcccccCceEEeeCCEEEEEEcCCCCeEEEEEeeecCC
Confidence 2222110 0 1378999999999999
Q ss_pred CCCcccCcchhHHHHHHHHHhcCcEEEEEcCCccccc
Q 023993 133 ELNLVKGRGGALLREKMVEAASKSFVVVADESKLVSG 169 (274)
Q Consensus 133 ~~~~ikg~gga~l~EKila~~S~~~IvLaD~sK~~~~ 169 (274)
++|+..++....+ +..++.+|+++|+-+++ +++.
T Consensus 165 ~GN~~~~~~~~~~-~~~~a~aA~~vIveve~--iv~~ 198 (235)
T 3rrl_A 165 LGNLVFRKTARNF-NPLCAMAAKICVAEVEE--IVPA 198 (235)
T ss_dssp TCCEECCGGGCTT-HHHHHHTEEEEEEEESE--EECT
T ss_pred CceEEEecCcccc-cHHHHHhcCEEEEEEee--cccc
Confidence 9999665543222 24678889888887754 4443
No 26
>3rrl_B Succinyl-COA:3-ketoacid-coenzyme A transferase SU; MCSG,PSI-biology, structural genomics, midwest center for ST genomics; 2.29A {Helicobacter pylori} PDB: 3cdk_B
Probab=97.29 E-value=0.00011 Score=64.30 Aligned_cols=108 Identities=23% Similarity=0.323 Sum_probs=69.8
Q ss_pred HHHHHHHHHhcCCCCCEEEECcChHHHHHHHHHhchhhcCCCCCeEEECCcHHHHH-----------HHHhCCCc---EE
Q 023993 47 KKLAADKAVDYVKSGMALGLGTGSTAAFVVDRIGQLLKTGELRDIVGIPTSKRTEE-----------QAKSLNIP---LT 112 (274)
Q Consensus 47 K~~iA~~A~~~I~dg~vIgLGsGSTv~~l~~~L~~~~~~~~l~~itvVT~S~~ta~-----------~l~~~gi~---vi 112 (274)
|+.||++|+..++||++|.||-| .-..++.++. . .+++..+.+-.... .+...|-. ..
T Consensus 2 r~~Ia~raA~el~dG~~vnlGIG-iP~~va~~~~-~------~~v~l~~E~G~~g~~p~p~~~~~d~~~in~G~~~~t~~ 73 (207)
T 3rrl_B 2 REAIIKRAAKELKEGMYVNLGIG-LPTLVANEVS-G------MNIVFQSENGLLGIGAYPLEGSVDADLINAGKETITVV 73 (207)
T ss_dssp HHHHHHHHHTTCCTTCEEEECTT-GGGGGGGGGS-S------SCCEEEETTTEEEECCCCCTTCCCTTCBCTTSBBCCEE
T ss_pred hHHHHHHHHHhCCCCCEEEECCC-hHHHHHHhcc-C------CcEEEEeccceecCcCCCCccccCHhHeecCCceeeec
Confidence 78899999999999999999999 4455556554 2 35666655432210 00011111 11
Q ss_pred E----cC--------CCCcccEEEEccCcccCCCCc---------ccCcchhHHHHHHHHHhcCcEEEEEcCCcc
Q 023993 113 T----LD--------DHPSLDLAIDGADEVDPELNL---------VKGRGGALLREKMVEAASKSFVVVADESKL 166 (274)
Q Consensus 113 ~----l~--------~~~~iD~afdGaD~Vd~~~~~---------ikg~gga~l~EKila~~S~~~IvLaD~sK~ 166 (274)
. ++ ...++|++|.|+-+||...++ ++|.||+.- +.+.|+++|++.+|++-
T Consensus 74 ~~~~~~~~~~~F~~~~gG~~Dvailga~qVD~~Gnvn~~~~~~~~~~G~GGa~d----~~~~A~~vi~~~~~t~k 144 (207)
T 3rrl_B 74 PGASFFNSADSFAMIRGGHIDLAILGGMEVSQNGDLANWMIPKKLIKGMGGAMD----LVHGAKKVIVIMEHCNK 144 (207)
T ss_dssp EEEEECCHHHHHHHHHTTCCSEEEECCSEEETTSCEECSEETTTEECCCTTHHH----HHHHSSEEEEECCSBCT
T ss_pred CCceeeCCHHHHHHHhCCCeeEEEECHHHHCcCCCccccccCCeeecCcccHHH----HHhCCCEEEEEEeeecC
Confidence 0 11 124899999999999975533 455566652 45678999999999853
No 27
>1k6d_A Acetate COA-transferase alpha subunit; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.90A {Escherichia coli} SCOP: c.124.1.2
Probab=97.24 E-value=0.0013 Score=57.69 Aligned_cols=112 Identities=20% Similarity=0.206 Sum_probs=72.4
Q ss_pred HHHHHhcCCCCCEEEECcC---hHHHHHHHHHhchhhcCCCCCeEEECCcHH-----HHHHHHhC---------------
Q 023993 51 ADKAVDYVKSGMALGLGTG---STAAFVVDRIGQLLKTGELRDIVGIPTSKR-----TEEQAKSL--------------- 107 (274)
Q Consensus 51 A~~A~~~I~dg~vIgLGsG---STv~~l~~~L~~~~~~~~l~~itvVT~S~~-----ta~~l~~~--------------- 107 (274)
+++|+++|+|||+|++|+. .+-..++++|.++ +.+++|+++++.- ...++...
T Consensus 8 a~eAv~~IkdG~tv~~ggf~~~g~P~~l~~aL~~~----~~~dLtl~~~~~g~~~~g~~~l~~~g~v~~~~~s~~~~~~~ 83 (220)
T 1k6d_A 8 LQDATGFFRDGMTIMVGGFMGIGTPSRLVEALLES----GVRDLTLIANDTAFVDTGIGPLIVNGRVRKVIASHIGTNPE 83 (220)
T ss_dssp HHHHGGGCCTTCEEEECCBTTBTCCHHHHHHHHHH----TCCSEEEECSBCCCTTSTTHHHHHTTCEEEEEESBCTTCHH
T ss_pred HHHHHhhCCCCCEEEECCccccCCHHHHHHHHHHC----CCCCEEEEEecCCCCccCHHHHhhCCCccEEEEcCCCCCHH
Confidence 6789999999999999874 3467788888765 2468999988630 11222211
Q ss_pred -------C-CcEEE---------------------c------------------------CCCCcccEEEEccCcccCCC
Q 023993 108 -------N-IPLTT---------------------L------------------------DDHPSLDLAIDGADEVDPEL 134 (274)
Q Consensus 108 -------g-i~vi~---------------------l------------------------~~~~~iD~afdGaD~Vd~~~ 134 (274)
| +++.. . ....++|+||.-+...|.++
T Consensus 84 ~r~~~~~G~ie~~~~p~g~~~~~~ra~~~g~P~~~t~~g~gt~v~~g~~~~~~~g~~~l~~~~l~~DVAli~a~~aD~~G 163 (220)
T 1k6d_A 84 TGRRMISGEMDVVLVPQGTLIEQIRCGGAGLGGFLTPTGVGTVVEEGKQTLTLDGKTWLLERPLRADLALIRAHRCDTLG 163 (220)
T ss_dssp HHHHHHTTSSEEEECCHHHHHHHHHHHHTTCCEEEESTTTTCC--CCSCEEEETTEEEEEECCCCEEEEEEEEEEEETTC
T ss_pred HHHHHHCCCeEEEecChHHHHHHHHHHhCCCCeEEeecccCceeccCceeEeeCCeEEEEecCCCCcEEEEEeecCCCCc
Confidence 1 11111 0 00126899999999999998
Q ss_pred CcccCcchhHHHHHHHHHhcCcEEEEEcCCccccc
Q 023993 135 NLVKGRGGALLREKMVEAASKSFVVVADESKLVSG 169 (274)
Q Consensus 135 ~~ikg~gga~l~EKila~~S~~~IvLaD~sK~~~~ 169 (274)
|+.-++..... ...++.+|+++|+-+++ .+++
T Consensus 164 n~~~~~~~~~~-~~~~a~aA~~VIveVn~--~vp~ 195 (220)
T 1k6d_A 164 NLTYQLSARNF-NPLIALAADITLVEPDE--LVET 195 (220)
T ss_dssp CEECCHHHHTT-HHHHHHHEEEEEEEEEE--EECT
T ss_pred eEEEecCCccc-cHHHHHhcCEEEEEEcc--ccCc
Confidence 88665433222 24578889988887765 4443
No 28
>3cdk_A Succinyl-COA:3-ketoacid-coenzyme A transferase subunit A; CO-expressed complex, hetero-tetramer, structural genomics, PSI-2; 2.59A {Bacillus subtilis}
Probab=97.11 E-value=0.0011 Score=59.07 Aligned_cols=107 Identities=16% Similarity=0.095 Sum_probs=71.4
Q ss_pred HHHHHhcCCCCCEEEECcC---hHHHHHHHHHhchhhcCCCCCeEEECCcHHH-----HHHHHhCCC-c-EE--------
Q 023993 51 ADKAVDYVKSGMALGLGTG---STAAFVVDRIGQLLKTGELRDIVGIPTSKRT-----EEQAKSLNI-P-LT-------- 112 (274)
Q Consensus 51 A~~A~~~I~dg~vIgLGsG---STv~~l~~~L~~~~~~~~l~~itvVT~S~~t-----a~~l~~~gi-~-vi-------- 112 (274)
+++|+++|+|||+|++|+- .+-..+++.|.++ +.+++|+++++... ..++. .|. + ++
T Consensus 11 a~eAv~~IkdG~tV~~ggf~~~g~P~~li~aL~~~----~~~dLtl~~~~~~~~~~gl~~l~~-~g~v~~~~~s~~g~~~ 85 (241)
T 3cdk_A 11 SKEAAKLIHDGDTLIAGGFGLCGIPEQLILSIRDQ----GVKDLTVVSNNCGVDDWGLGLLLA-NKQIKKMIASYVGENK 85 (241)
T ss_dssp HHHHHTTCCTTCEEEECCBTTBTCCHHHHHHHHHH----TCCSEEEEESSCCCSSSTTHHHHH-TTCEEEEEESBCCSCH
T ss_pred HHHHHhhCCCCCEEEECCcCccCcHHHHHHHHHHc----CCCCEEEEEecCCCCCccHHHHhh-CCCcCeEEEeccCCCH
Confidence 6778899999999999873 3567888888765 34789999874311 12222 121 1 11
Q ss_pred -----------------------------------Ec-----------------CC-------CCcccEEEEccCcccCC
Q 023993 113 -----------------------------------TL-----------------DD-------HPSLDLAIDGADEVDPE 133 (274)
Q Consensus 113 -----------------------------------~l-----------------~~-------~~~iD~afdGaD~Vd~~ 133 (274)
.. ++ ..++|+||..+...|.+
T Consensus 86 ~~r~~~~~G~ie~~~~p~g~l~~~~ra~~~g~P~~~t~~g~gT~v~~g~~~~~~~g~~~l~~~~l~~DVAlI~a~~aD~~ 165 (241)
T 3cdk_A 86 IFERQFLSGELEVELVPQGTLAERIRAGGAGIPGFYTATGVGTSIAEGKEHKTFGGRTYVLERGITGDVAIVKAWKADTM 165 (241)
T ss_dssp HHHHHHTTTSSEEEECCHHHHHHHHHHHHHTCCEEEESTTTTSGGGTTSCEEEETTEEEEEEECCCEEEEEEEEEEEETT
T ss_pred HHHHHHHCCCceEEEcCHHHHHHHHHHHhcCCCeEEEecccCceeccCceeeccCCceEEEccCCCCcEEEEEeccCCCC
Confidence 10 00 12689999999999999
Q ss_pred CCcccCcchhHHHHHHHHHhcCcEEEEEcC
Q 023993 134 LNLVKGRGGALLREKMVEAASKSFVVVADE 163 (274)
Q Consensus 134 ~~~ikg~gga~l~EKila~~S~~~IvLaD~ 163 (274)
+|+.-++....+- ..++.+|+++|+-+++
T Consensus 166 Gn~~~~~~~~~~~-~~~a~aAk~VIveVn~ 194 (241)
T 3cdk_A 166 GNLIFRKTARNFN-PIAAMAGKITIAEAEE 194 (241)
T ss_dssp CCEECCGGGCTTH-HHHHHHEEEEEEEEEE
T ss_pred CeEEEecCchhhH-HHHHHhCCEEEEEEeC
Confidence 9986664432222 5678889988887765
No 29
>3d3u_A 4-hydroxybutyrate COA-transferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.80A {Porphyromonas gingivalis}
Probab=96.81 E-value=0.002 Score=61.95 Aligned_cols=114 Identities=16% Similarity=0.139 Sum_probs=77.2
Q ss_pred HHHHHHHHH-hcCCCCCEEEECcCh-HHHHHHHHHhchhhcCCCCCeEEECCcHHHHH-----HHHhCCCcEE-------
Q 023993 47 KKLAADKAV-DYVKSGMALGLGTGS-TAAFVVDRIGQLLKTGELRDIVGIPTSKRTEE-----QAKSLNIPLT------- 112 (274)
Q Consensus 47 K~~iA~~A~-~~I~dg~vIgLGsGS-Tv~~l~~~L~~~~~~~~l~~itvVT~S~~ta~-----~l~~~gi~vi------- 112 (274)
|..-|++|+ ++|+|||+|++|++. +-..++++|.++.+ +++++|++++...... .+. ..+++.
T Consensus 10 K~~sa~eAv~~~IkdG~tV~~ggf~g~P~~Li~AL~~~~~--~~~dLtli~~~~~~~~~~~~~~l~-~~i~~~~~~~g~~ 86 (439)
T 3d3u_A 10 RVCSADEAVVDSLKPGTKVVFGHAAAAPVRFSQAMYRQRE--KLENITVFHMLYFGDAPHLAPEMR-SHVHPTLNFLEGN 86 (439)
T ss_dssp HBCCHHHHHHHHCCTTCEEEECCBTTCCHHHHHHHHHTTT--TCCSEEEECSCBSSCCTTSSGGGT-TTEEEEC------
T ss_pred CCCcHHHHHHhhCCCcCEEEECcccChHHHHHHHHHHhhC--CCCCEEEEEecCCCcchhccHHhC-CcEEEEECCCChH
Confidence 455688899 999999999999885 56788899987632 3578999988422110 110 011111
Q ss_pred -------------Ec----------CCCCcccEEEEccCcccCCCCcccCcchhHHHHHHHHHhcCcEEEEEcCCc
Q 023993 113 -------------TL----------DDHPSLDLAIDGADEVDPELNLVKGRGGALLREKMVEAASKSFVVVADESK 165 (274)
Q Consensus 113 -------------~l----------~~~~~iD~afdGaD~Vd~~~~~ikg~gga~l~EKila~~S~~~IvLaD~sK 165 (274)
.. .....+|+||..+...|.++++..+. ..... +.++++|+++|+-+++..
T Consensus 87 ~r~~i~~G~~~~~P~~ls~~~~~l~~~~l~~DVAlI~as~~D~~Gnls~g~-s~~~~-~~~~~aA~~VIveVn~~v 160 (439)
T 3d3u_A 87 SRPASRDRRVDFIPCHFHEVPELFRQGFFPLDVAVVQVSTPNEEGYCSFGV-SCDYT-KAAAECAPVVVAEVNKQM 160 (439)
T ss_dssp --------------CCGGGHHHHHTTSSSCCSEEEEEEECCCTTSEEECTT-BCBTH-HHHHHHCSEEEEEEESSS
T ss_pred HHHHHHcCCCeEECCCcchHHHHHHcCCCCCCEEEEEEecCCCCceEEEec-cccch-HHHHhhCCeEEEEECCCC
Confidence 00 11246899999999999998885542 22222 467789999999999876
No 30
>3qli_A Coenzyme A transferase; COEN transferase; 1.90A {Yersinia pestis} PDB: 3qlk_A 3s8d_A
Probab=96.69 E-value=0.003 Score=61.33 Aligned_cols=115 Identities=14% Similarity=0.205 Sum_probs=75.4
Q ss_pred HHHHHHHHHhcCCCCCEEEECcCh-HHHHHHHHHhchhhcCCCCCeEEECCc-H--HHHHHHH-h-C-CCcEEEc-----
Q 023993 47 KKLAADKAVDYVKSGMALGLGTGS-TAAFVVDRIGQLLKTGELRDIVGIPTS-K--RTEEQAK-S-L-NIPLTTL----- 114 (274)
Q Consensus 47 K~~iA~~A~~~I~dg~vIgLGsGS-Tv~~l~~~L~~~~~~~~l~~itvVT~S-~--~ta~~l~-~-~-gi~vi~l----- 114 (274)
|..=|++|+++|+|||+|++|++. +-..+.+.|.++.+.+.++++++++.- . .....+. . . .+.....
T Consensus 25 K~vsaeEAv~lIkdGdtV~~gG~~g~P~~L~~AL~~r~~~g~~~~ltl~~~~~~G~~~~~~~~~~~~~~~~~~~~f~~~~ 104 (455)
T 3qli_A 25 KLTTPEEAVSSIASGSHLSMGMFAAEPPALLKALADRATRGDIGDLRVYYFETAKIAGDTILRYELNNRIKPYSMFVTAV 104 (455)
T ss_dssp HBCCHHHHTTTCCTTCEEEECSGGGSCHHHHHHHHHHHHTTCCCSEEEEESSCCHHHHHTTTCGGGTTTEEEEESSCCHH
T ss_pred cCCCHHHHHHhCCCCCEEEECCcccCHHHHHHHHHHHHhhCCCcceEEEEecccccchhhhhChhhcCcEEEeeCcCChh
Confidence 334588899999999999999874 347788999887555667899998632 2 1111121 1 1 1221111
Q ss_pred --------------------C-----------CCCcccEEEEccCcccCCCCcccCcchhHHHHHHHHHhcCcEEEEEcC
Q 023993 115 --------------------D-----------DHPSLDLAIDGADEVDPELNLVKGRGGALLREKMVEAASKSFVVVADE 163 (274)
Q Consensus 115 --------------------~-----------~~~~iD~afdGaD~Vd~~~~~ikg~gga~l~EKila~~S~~~IvLaD~ 163 (274)
+ ....+|++|..+...|.++++.-+...... +.++++|+++|+-+++
T Consensus 105 ~R~~i~~G~~~~~~~~~~y~p~~ls~~p~~~~~~~~iDVAli~vs~~D~~G~~s~g~s~~~~--~~~a~~Ak~VI~EVN~ 182 (455)
T 3qli_A 105 ERALIRRGIEDGGRKVVNYVPSNFHQAPRLLAEEIGIDTFMHTVSPMDCHGYFSLGVGNDYS--SRIARSARRFIVEVNR 182 (455)
T ss_dssp HHHHHHHHHHTTTCCCCCCCCCCGGGHHHHHHTTTCCSEEEEEECCCCTTSEEECTTBCBTH--HHHHHHSSEEEEEECT
T ss_pred HHHHHhCCCcccCcCcEEEECccHHHHHHHHHhcCCCCEEEEEEecCCCCceEEEccCCCch--HHHHhhcCEEEEEecC
Confidence 0 123689999999999988777554432222 4567789999988876
No 31
>3gk7_A 4-hydroxybutyrate COA-transferase; alpha/beta protein; HET: SPD; 1.85A {Clostridium aminobutyricum} PDB: 3qdq_A*
Probab=96.16 E-value=0.0093 Score=57.77 Aligned_cols=112 Identities=13% Similarity=0.113 Sum_probs=74.6
Q ss_pred HHHHHHHHHhcCCCCCEEEECcC-hHHHHHHHHHhchhhcCCCCCeEEECC-cHH----HHHHHHhCCCcEEEc------
Q 023993 47 KKLAADKAVDYVKSGMALGLGTG-STAAFVVDRIGQLLKTGELRDIVGIPT-SKR----TEEQAKSLNIPLTTL------ 114 (274)
Q Consensus 47 K~~iA~~A~~~I~dg~vIgLGsG-STv~~l~~~L~~~~~~~~l~~itvVT~-S~~----ta~~l~~~gi~vi~l------ 114 (274)
|..=|++|+++|++||+|+++.+ .+-..+.+.|.++.+ .++++++++. |.. ....+.+ .++....
T Consensus 10 Kl~saeeA~~~ik~G~~v~~~~~~~~p~~l~~al~~~~~--~l~~v~l~~~~s~~~~~~~~~~~~~-~~~~~~~~~~~~~ 86 (448)
T 3gk7_A 10 RTCTADEAVKSIKSGDRVLFAHCVAEPPVLVEAMVANAA--AYKNVTVSHMVTLGKGEYSKPEYKE-NFTFEGWFTSPST 86 (448)
T ss_dssp TBCCHHHHGGGCCTTCEEEECSGGGCCHHHHHHHHHTGG--GCSSEEEEESSCSSCCGGGSGGGTT-TEEEEESSCCTTT
T ss_pred cCCCHHHHHHhCCCcCEEEECCCCCCHHHHHHHHHHHHH--hhcCeEEEEeeccCCccccChHHhC-cEEEecCcCCHHH
Confidence 44457889999999999999987 345778888887643 3678998876 322 1111111 1222111
Q ss_pred ------------------------CCCCcccEEEEccCcccCCCCcccCcchhHHHHHHHHHhcCcEEEEEcC
Q 023993 115 ------------------------DDHPSLDLAIDGADEVDPELNLVKGRGGALLREKMVEAASKSFVVVADE 163 (274)
Q Consensus 115 ------------------------~~~~~iD~afdGaD~Vd~~~~~ikg~gga~l~EKila~~S~~~IvLaD~ 163 (274)
.+...+|+||..+...|.++++..+..-... +.++.+|+++|+-+++
T Consensus 87 r~~i~~G~~~~~p~~ls~~p~~~~~g~~~~DVAli~as~~D~~Gn~s~g~s~~~~--~~~a~~A~~VI~eVn~ 157 (448)
T 3gk7_A 87 RGSIAEGHGQFVPVFFHEVPSLIRKDIFHVDVFMVMVSPPDHNGFCCVGVSSDYT--MQAIKSAKIVLAEVND 157 (448)
T ss_dssp HHHHHHTSSEECCCCGGGHHHHHHTTTTCCSEEEEEECCCCTTSEEECCSBCBTH--HHHHHHCSEEEEEEET
T ss_pred HhHHhCCCeeEECchHHhHHHHHHhCCCCCCEEEEEEecCCCCCcEEecCCcChH--HHHHHhCCeEEEEeec
Confidence 1124789999999999998888655332222 4677889999998876
No 32
>1poi_A Glutaconate coenzyme A-transferase; COA, glutamate, protein fermentation; 2.50A {Acidaminococcus fermentans} SCOP: c.124.1.2
Probab=96.14 E-value=0.024 Score=52.33 Aligned_cols=47 Identities=23% Similarity=0.339 Sum_probs=33.4
Q ss_pred cccEEEEccCcccCCCCcccCcchhHHHHHHHHHhcCcEEEEEcCCccccc
Q 023993 119 SLDLAIDGADEVDPELNLVKGRGGALLREKMVEAASKSFVVVADESKLVSG 169 (274)
Q Consensus 119 ~iD~afdGaD~Vd~~~~~ikg~gga~l~EKila~~S~~~IvLaD~sK~~~~ 169 (274)
++|+||.-+...|.++|+.-++. ...-..++.+|+++|+-+++ .++.
T Consensus 171 ~~DVAlI~a~~aD~~GN~~~~~~--~~~~~~~a~aAk~VIveVe~--ivp~ 217 (317)
T 1poi_A 171 QVDVAIIHAQQASPDGTVRIWGG--KFQDVDIAEAAKYTIVTCEE--IISD 217 (317)
T ss_dssp CCSEEEEEEEEECTTCCEECCSC--CTTHHHHHHHSSEEEEEEEE--ECCH
T ss_pred CCcEEEEEeccCCCCceEEEecC--CCchHHHHhhCCEEEEEEcC--CCCc
Confidence 57999999999999998855332 12225678889988887765 4443
No 33
>1xr4_A Putative citrate lyase alpha chain/citrate-ACP TR; the midwest center for structural genomics, MCSG, structural genomics; 2.37A {Salmonella typhimurium} SCOP: c.124.1.2 c.124.1.2
Probab=96.09 E-value=0.016 Score=56.90 Aligned_cols=112 Identities=21% Similarity=0.217 Sum_probs=74.7
Q ss_pred HHHHHHhc--CCCCCEEEECcCh-HHHHHHHHHhchhhcCCCCCeEEECCcHH-----HHHHHHhCCC--cEEE------
Q 023993 50 AADKAVDY--VKSGMALGLGTGS-TAAFVVDRIGQLLKTGELRDIVGIPTSKR-----TEEQAKSLNI--PLTT------ 113 (274)
Q Consensus 50 iA~~A~~~--I~dg~vIgLGsGS-Tv~~l~~~L~~~~~~~~l~~itvVT~S~~-----ta~~l~~~gi--~vi~------ 113 (274)
=|++|+++ |+|||+|++|++. +-..+++.|.++.++.+++++|++++|.- .+..++ .|. +++.
T Consensus 48 SaeEAv~~~~IkdG~tV~~gg~~G~P~~Li~AL~~r~~~~g~kdLtli~~s~g~~~~~l~~~i~-~g~v~r~~~~~~g~~ 126 (509)
T 1xr4_A 48 SLEEAIRRSGLKNGMTISFHHAFRGGDKVVNMVMAKLAEMGFRDLTLASSSLIDAHWPLIEHIK-NGVVRQIYTSGLRGK 126 (509)
T ss_dssp SHHHHHHHTTCCTTCEEEECCTTGGGCCHHHHHHHHHHHTTCCSEEEEESCCCGGGTTHHHHHH-TTSEEEEEESBCCHH
T ss_pred CHHHHhcCCCCCCcCEEEECCccCCHHHHHHHHHHHHHhcCCcceEEEecCCcCcchhHHHHhh-cCceEEEEEccCCHH
Confidence 37889999 9999999999773 55677888877666445679999987552 122222 221 1221
Q ss_pred ----------------cC----------CCCcccEEEEccCcccCCCCccc--Cc---chhHHHHHHHHHhcCcEEEEEc
Q 023993 114 ----------------LD----------DHPSLDLAIDGADEVDPELNLVK--GR---GGALLREKMVEAASKSFVVVAD 162 (274)
Q Consensus 114 ----------------l~----------~~~~iD~afdGaD~Vd~~~~~ik--g~---gga~l~EKila~~S~~~IvLaD 162 (274)
.. ....+|+||..+...|.++++.- +. ....+ .+.++.+|+.+|+-++
T Consensus 127 ~r~~i~~G~~~~P~~~s~~~g~p~ll~~~~l~iDVAlI~as~aD~~Gnls~~~g~~~~~s~~~-~~a~a~~A~~VIaEVn 205 (509)
T 1xr4_A 127 LGEEISAGLMENPVQIHSHGGRVKLIQSGELNIDVAFLGVPCCDEFGNANGFSGKSRCGSLGY-AQVDAQYAKCVVLLTE 205 (509)
T ss_dssp HHHHHHHTCCSSCEEECCHHHHHHHHHTTSSCCSEEEEEESEEETTCCEESSSSSSCCCCCTT-HHHHHHHCSEEEEEES
T ss_pred HHHHHHcCCCcCCeeEeccCCHHHHHhcCCCCceEEEEEeccCCCCceEEEeCCCCcccchHH-HHHHHhhCCEEEEEeC
Confidence 11 12368999999999999888853 31 11111 2467788999998887
Q ss_pred C
Q 023993 163 E 163 (274)
Q Consensus 163 ~ 163 (274)
+
T Consensus 206 ~ 206 (509)
T 1xr4_A 206 E 206 (509)
T ss_dssp C
T ss_pred C
Confidence 6
No 34
>4eu9_A Succinyl-COA:acetate coenzyme A transferase; HET: COA; 1.48A {Acetobacter aceti} PDB: 4eua_A* 4eu3_A* 4eu4_A* 4eu5_A* 4eu6_A* 4eu7_A* 4eu8_A* 4eub_A* 4euc_A* 4eud_A*
Probab=96.02 E-value=0.027 Score=55.26 Aligned_cols=116 Identities=16% Similarity=0.180 Sum_probs=71.7
Q ss_pred HHHHHHHHHhcCCCCCEEEECc--C-hHHHHHHHHHhchhh----cCCCCCeEEECCcH---HHHHHHHhCC-C------
Q 023993 47 KKLAADKAVDYVKSGMALGLGT--G-STAAFVVDRIGQLLK----TGELRDIVGIPTSK---RTEEQAKSLN-I------ 109 (274)
Q Consensus 47 K~~iA~~A~~~I~dg~vIgLGs--G-STv~~l~~~L~~~~~----~~~l~~itvVT~S~---~ta~~l~~~g-i------ 109 (274)
|..=|++|+++|+|||+|++++ | .+-..+.+.|.+|.+ .+...++++++... .....+.+.| +
T Consensus 13 KlvSaeEAv~~IkdGd~V~~~Gf~~~G~P~~L~~ALa~R~~~~~~~g~~~~i~l~~~~~~~~~~~~~l~~~g~i~~~~~~ 92 (514)
T 4eu9_A 13 KVCPAETASELIKHGDVVGTSGFTGAGYPKEVPKALAQRMEAAHDRGEKYQISLITGASTGPQLDGELAKANGVYFRSPF 92 (514)
T ss_dssp GBCCHHHHHTTCCTTCEEEECCBTTBSCCCHHHHHHHHHHHHHHHTTCCCCEEEECSSCCCTTTHHHHHHTTCEEEEESC
T ss_pred CCCcHHHHHHhCCCCCEEEECCCCCCcCHHHHHHHHHHHHHHhhcCCcceeEEEEEecCcCcccccccccCCCEEEEEec
Confidence 4445788999999999999984 2 233455666655422 23334677776421 1122222222 1
Q ss_pred ---------------cEEEc-----------CCCCcccEEEEccCcccCCCCcccCcchhHHHHHHHHHhcCcEEEEEcC
Q 023993 110 ---------------PLTTL-----------DDHPSLDLAIDGADEVDPELNLVKGRGGALLREKMVEAASKSFVVVADE 163 (274)
Q Consensus 110 ---------------~vi~l-----------~~~~~iD~afdGaD~Vd~~~~~ikg~gga~l~EKila~~S~~~IvLaD~ 163 (274)
..+.. +....+|+||..+...|.+++++.+...... +.++++|+++|+-++.
T Consensus 93 ~~~~~~R~~i~~G~~~y~p~~ls~~~~~~~~~~~~~iDVAlI~as~~De~Gnis~g~sv~~~--~~~~~~A~~VIvevn~ 170 (514)
T 4eu9_A 93 NTDATMRNRINAGETEYFDNHLGQVAGRAVQGNYGKFNIALVEATAITEDGGIVPTSSVGNS--QTFLNLAEKVIIEVNE 170 (514)
T ss_dssp CCCHHHHHHHHTTSSEECCCCGGGHHHHHHHTTTCCCCEEEEEEEEECTTCCEEECSBCBTH--HHHHHHCSEEEEEEET
T ss_pred CCCHHHHHHHHcCCeeEECccccchHHHHHhccCCCceEEEEEEEcCCCCceEEecCCcchH--HHHHHhCCeEEEEEec
Confidence 11111 1124789999999999999988766443333 3567889999999886
Q ss_pred C
Q 023993 164 S 164 (274)
Q Consensus 164 s 164 (274)
.
T Consensus 171 ~ 171 (514)
T 4eu9_A 171 W 171 (514)
T ss_dssp T
T ss_pred C
Confidence 3
No 35
>3nze_A Putative transcriptional regulator, sugar-binding; structural genomics, PSI-2, protein structure initiative; 1.70A {Arthrobacter aurescens} SCOP: c.124.1.0
Probab=95.91 E-value=0.0092 Score=53.60 Aligned_cols=49 Identities=18% Similarity=0.205 Sum_probs=37.5
Q ss_pred hHHHHHHHHHHHHh----cCCCCCEEEECcChHHHHHHHHHhchhhcCCCCCeEEEC
Q 023993 43 QDDLKKLAADKAVD----YVKSGMALGLGTGSTAAFVVDRIGQLLKTGELRDIVGIP 95 (274)
Q Consensus 43 ~~~~K~~iA~~A~~----~I~dg~vIgLGsGSTv~~l~~~L~~~~~~~~l~~itvVT 95 (274)
.++.++.+++.|++ ++++|++||++.|+|+..++++|... ..+++++|+
T Consensus 35 ~~~~~~~lg~~aA~~L~~~l~~~~viGv~wG~T~~~v~~~l~~~----~~~~~~vV~ 87 (267)
T 3nze_A 35 EAETLDRVAMQAARTIGPLVDSNAIIGVAWGATLSAVSRHLTRK----MTHDSIVVQ 87 (267)
T ss_dssp HHHHHHHHHHHHHHHHGGGCCSSCEEEECCSHHHHHHHHTCCCC----CCSSCEEEE
T ss_pred hHHHHHHHHHHHHHHHHHhCCCCCEEEECCCHHHHHHHHhcCcc----CCCCCEEEE
Confidence 34567778888775 46899999999999999999998643 124677764
No 36
>2oas_A ATOA, 4-hydroxybutyrate coenzyme A transferase; alpha beta protein, structural genomics, PSI-2, protein STRU initiative; HET: COA; 2.40A {Shewanella oneidensis}
Probab=95.91 E-value=0.024 Score=54.55 Aligned_cols=108 Identities=14% Similarity=0.075 Sum_probs=71.1
Q ss_pred HHHHHhcCCCCCEEEECcC-hHHHHHHHHHhchhhcCCCCCeEEECCcHH-----HHHHHHhCCCcEEEc----------
Q 023993 51 ADKAVDYVKSGMALGLGTG-STAAFVVDRIGQLLKTGELRDIVGIPTSKR-----TEEQAKSLNIPLTTL---------- 114 (274)
Q Consensus 51 A~~A~~~I~dg~vIgLGsG-STv~~l~~~L~~~~~~~~l~~itvVT~S~~-----ta~~l~~~gi~vi~l---------- 114 (274)
+++|+++|+|||+|++|++ .+...++++|.++.+ .++++|+++++.. ....+ ...+.....
T Consensus 9 aeeAv~~IkdG~tI~~ggf~g~P~~Li~AL~~r~~--~~kdLtl~~~~s~g~~~~~~~~l-~~~i~~~~~~~~~~lr~~i 85 (436)
T 2oas_A 9 ALEAVSLIRSGETLWTHSMGATPKVLLDALAKHAL--TLDNITLLQLHTEGAESLSHPSL-LGHLRHRCFFGGVPTRPLL 85 (436)
T ss_dssp HHHHHTTCCTTCEEEECCBTTCCHHHHHHHHHHGG--GCCSEEEEESSBSSCGGGGSGGG-TTTEEEEESSCCTTTHHHH
T ss_pred HHHHHhhCCCCCEEEECCccCcHHHHHHHHHHhhc--cCCCEEEEEecccCChhhhHHHh-cCcEEEeecCCCHHHHHHH
Confidence 6788999999999999976 234678888887632 2468999985421 11011 111222211
Q ss_pred --------------------CCCCcccEEEEccCcccCCCCcccCcchhHHHHHHHHHhcCcEEEEEcC
Q 023993 115 --------------------DDHPSLDLAIDGADEVDPELNLVKGRGGALLREKMVEAASKSFVVVADE 163 (274)
Q Consensus 115 --------------------~~~~~iD~afdGaD~Vd~~~~~ikg~gga~l~EKila~~S~~~IvLaD~ 163 (274)
.....+|+||..+...|.++++.-+... .. .+.++++|+++|+-+++
T Consensus 86 ~~G~~~y~P~~ls~~~~~l~~~~l~~DVAlI~as~aD~~Gn~s~~~s~-~~-~~~~a~aA~~VIveVn~ 152 (436)
T 2oas_A 86 QSGDADYVPIFLSEVPKLFRSGEQKIDTAIIQVSPPDKHGMCSLGISV-EA-TLAACQVAGKIIAHINP 152 (436)
T ss_dssp HTTSSEECCCCGGGHHHHHHTTSSCCSEEEEEECCCCTTCEEECTTBC-TT-HHHHHHHCSEEEEEECT
T ss_pred HcCCCeeeCCccccHHHHHHcCCCCCCEEEEEeccCCCCceEEEecCc-Cc-HHHHHHhcCeEEEEEcC
Confidence 0124689999999999998888654322 22 24577889999988876
No 37
>3kv1_A Transcriptional repressor; alpha-beta structure, structural genomics, PSI-2, protein ST initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.70A {Vibrio fischeri} SCOP: c.124.1.0
Probab=95.88 E-value=0.0077 Score=54.13 Aligned_cols=40 Identities=28% Similarity=0.452 Sum_probs=32.7
Q ss_pred ChHHHHHHHHHHHHh----cCCCCCEEEECcChHHHHHHHHHhc
Q 023993 42 TQDDLKKLAADKAVD----YVKSGMALGLGTGSTAAFVVDRIGQ 81 (274)
Q Consensus 42 ~~~~~K~~iA~~A~~----~I~dg~vIgLGsGSTv~~l~~~L~~ 81 (274)
+.++.++.+++.|++ ++++|++||++.|+|+..++++|..
T Consensus 33 ~~~~~~~~lg~aaA~~L~~~l~~~~vIGv~wG~Tl~~v~~~l~~ 76 (267)
T 3kv1_A 33 NTNEQRKQVAALVSSYLNNNLQEGMAVAVGQGQNVAAVADHAGI 76 (267)
T ss_dssp SHHHHHHHHHHHHHHHHHHHCCTTCEEEECCSHHHHHHHHCCCC
T ss_pred CchHHHHHHHHHHHHHHHHhCCCCCEEEECchHHHHHHHHhccc
Confidence 444556778888775 4689999999999999999999864
No 38
>3eh7_A 4-hydroxybutyrate COA-transferase; citrate lyase, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.05A {Porphyromonas gingivalis}
Probab=95.85 E-value=0.029 Score=54.05 Aligned_cols=113 Identities=14% Similarity=0.082 Sum_probs=70.4
Q ss_pred HHHHHHHHHhcCCCCCEEEECcC-hHHHHHHHHHhchhhcCCCCCeEEECCcHH-----HHHHHHhC-CCc---------
Q 023993 47 KKLAADKAVDYVKSGMALGLGTG-STAAFVVDRIGQLLKTGELRDIVGIPTSKR-----TEEQAKSL-NIP--------- 110 (274)
Q Consensus 47 K~~iA~~A~~~I~dg~vIgLGsG-STv~~l~~~L~~~~~~~~l~~itvVT~S~~-----ta~~l~~~-gi~--------- 110 (274)
|..=|++|+++|+|||+|+++++ .+-..+.+.|.++.+ .++++++++.... ....+.+. .+.
T Consensus 14 K~~saeEAv~~IkdGd~V~~~g~~g~P~~L~~ALa~r~~--~l~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r 91 (434)
T 3eh7_A 14 RIVSAEEAVKHIKNGERVALSHAAGVPQSCVDALVQQAD--LFQNVEIYHMLCLGEGKYMAPEMAPHFRHITNFVGGNSR 91 (434)
T ss_dssp GEECHHHHHTTCCTTCEEEECCGGGCCHHHHHHHHHSTT--TC--CEEECCBCTTCC-----------------------
T ss_pred cCCcHHHHHHhCCCcCEEEECCccCCHHHHHHHHHHhHh--hcCCeEEEEeccCCchhhcChhhhCeEEEecCcCCHHHH
Confidence 44457889999999999999986 455788899987643 3678998875421 11111110 000
Q ss_pred -EEE----------c--------CCCCcccEEEEccCcccCCCCcccCcchhHHHHHHHHHhcCcEEEEEcC
Q 023993 111 -LTT----------L--------DDHPSLDLAIDGADEVDPELNLVKGRGGALLREKMVEAASKSFVVVADE 163 (274)
Q Consensus 111 -vi~----------l--------~~~~~iD~afdGaD~Vd~~~~~ikg~gga~l~EKila~~S~~~IvLaD~ 163 (274)
.+. + .....+|+||..+...|.++++.-+..-.. -+.++.+|+++|+-+++
T Consensus 92 ~~i~~G~~~~~p~~ls~~~~~~~~g~~~~DVAli~as~~D~~Gn~s~g~s~~~--~~~~~~~A~~VI~eVn~ 161 (434)
T 3eh7_A 92 KAVEENRADFIPVFFYEVPSMIRKDILHIDVAIVQLSMPDENGYCSFGVSCDY--SKPAAESAHLVIGEINR 161 (434)
T ss_dssp ------CTTCCCCCGGGHHHHHHTTSSCCSEEEEEECCCCTTSEEECTTBCTT--HHHHHHHCSEEEEEEET
T ss_pred HHHHCCCccccChhHHHHHHHHHhCCCCCcEEEEEEecCCCCCCEEecCccch--HHHHHHhCCeEEEEecC
Confidence 000 0 012478999999999999888865432112 24677889999998876
No 39
>2g39_A Acetyl-COA hydrolase; coenzyme A transferase, structural G PSI, protein structure initiative, midwest center for struc genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: c.124.1.2 c.124.1.2
Probab=95.70 E-value=0.027 Score=55.21 Aligned_cols=113 Identities=16% Similarity=0.150 Sum_probs=72.1
Q ss_pred HHHHHHHHhcCCCCCEEEECcCh---HHHHHHHHHhchhhcCCCCCeEEECC-cH--HHH-HHHHhCCCcEEE-c-----
Q 023993 48 KLAADKAVDYVKSGMALGLGTGS---TAAFVVDRIGQLLKTGELRDIVGIPT-SK--RTE-EQAKSLNIPLTT-L----- 114 (274)
Q Consensus 48 ~~iA~~A~~~I~dg~vIgLGsGS---Tv~~l~~~L~~~~~~~~l~~itvVT~-S~--~ta-~~l~~~gi~vi~-l----- 114 (274)
..=|++|+++|+|||+|++|+.+ +-..++++|.++.++..+ ++|++++ |. ... .++....++... .
T Consensus 15 v~saeEAv~~IkdGdtV~~gGf~~~G~P~~Li~AL~~r~~~~dl-~Ltl~~~~~~g~~~~~~l~~~g~v~~~~~~~~~~~ 93 (497)
T 2g39_A 15 VMSAAEAADLIQDGMTVGMSGFTRAGEAKAVPQALAMRAKERPL-RISLMTGASLGNDLDKQLTEAGVLARRMPFQVDST 93 (497)
T ss_dssp BCCHHHHHTTCCTTCEEEECCBTTBSCCCHHHHHHHHHHHHSCC-CEEEECSSCCCTTHHHHHHHTTCEEEEESCCCCHH
T ss_pred cCcHHHHHhhCCCCCEEEECCCCCCCCHHHHHHHHHHhhhcCCc-eEEEEecccccccchHHHhcCCceEEEEeeCCCHH
Confidence 33467788999999999999642 445677777765332222 4899986 22 111 222222233221 0
Q ss_pred -------------------------CCCC-cccEEEEccCcccCCCCcccCcchhHHHHHHHHHhcCcEEEEEcC
Q 023993 115 -------------------------DDHP-SLDLAIDGADEVDPELNLVKGRGGALLREKMVEAASKSFVVVADE 163 (274)
Q Consensus 115 -------------------------~~~~-~iD~afdGaD~Vd~~~~~ikg~gga~l~EKila~~S~~~IvLaD~ 163 (274)
.... .+|+||..+...|.++++.-+...... +.++.+|+++|+-+++
T Consensus 94 ~r~~i~~G~v~fvP~~ls~~~~~l~~~~l~~~DVAlI~as~aDe~Gnls~~~s~~~~--~~~a~aA~~VIvEVn~ 166 (497)
T 2g39_A 94 LRKAINAGEVMFIDQHLSETVEQLRNHQLKLPDIAVIEAAAITEQGHIVPTTSVGNS--ASFAIFAKQVIVEINL 166 (497)
T ss_dssp HHHHHHTTSSEECCCCTTTHHHHHHTTSSCCCSEEEEEESEECTTSCEECCSBCBTH--HHHHHHSSEEEEEEET
T ss_pred HHHHHHcCCCeEECCccccHHHHHHcCCcCCCCEEEEEecccCCCceEEEeCCcccH--HHHHHhCCeEEEEEcC
Confidence 0113 589999999999999888655332222 4577899999999976
No 40
>2nvv_A Acetyl-COA hydrolase/transferase family protein; alpha beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Porphyromonas gingivalis}
Probab=95.49 E-value=0.018 Score=56.47 Aligned_cols=112 Identities=17% Similarity=0.205 Sum_probs=70.9
Q ss_pred HHHHHHhcCCCCCEEEECcCh---HHHHHHHHHhchhhc----CCCCCeEEECC-cH--HHH-HHHHhCCCcEEE-c---
Q 023993 50 AADKAVDYVKSGMALGLGTGS---TAAFVVDRIGQLLKT----GELRDIVGIPT-SK--RTE-EQAKSLNIPLTT-L--- 114 (274)
Q Consensus 50 iA~~A~~~I~dg~vIgLGsGS---Tv~~l~~~L~~~~~~----~~l~~itvVT~-S~--~ta-~~l~~~gi~vi~-l--- 114 (274)
=|++|+++|+|||+|++|+.+ +-..++++|.++.++ |.-.++|++++ |. ... .++....++... .
T Consensus 7 SaeEAv~~IkdGdtV~~gGf~~~G~P~~Li~AL~~r~~~~~~~g~~~~Ltl~~~~s~g~~~~~~l~~~g~v~~~~~~~~~ 86 (506)
T 2nvv_A 7 TAEEAAEFVHHNDNVGFSGFTPAGNPKVVPAAIAKRAIAAHEKGNPFKIGMFTGASTGARLDGVLAQADAVKFRTPYQSN 86 (506)
T ss_dssp CHHHHHTTCCTTCEEEECCSSSTTCCCSHHHHHHHHHHHHHTTTCCCCEEEECSSCCCTTTHHHHHHTTCEEEEESCCCC
T ss_pred cHHHHHhhCCCCCEEEECCCCCCCCHHHHHHHHHHhHHhhccccCCceEEEEEecCCCcchhHHhccCCceEEEeeeCCC
Confidence 367788999999999999642 344666777655332 21126998885 22 111 222322333321 1
Q ss_pred ---------------------------CCCC-cccEEEEccCcccCCCCcccCcchhHHHHHHHHHhcCcEEEEEcC
Q 023993 115 ---------------------------DDHP-SLDLAIDGADEVDPELNLVKGRGGALLREKMVEAASKSFVVVADE 163 (274)
Q Consensus 115 ---------------------------~~~~-~iD~afdGaD~Vd~~~~~ikg~gga~l~EKila~~S~~~IvLaD~ 163 (274)
.... .+|+||..+...|.++++.-+...... +.++.+|+++|+-+++
T Consensus 87 ~~~r~~i~~G~i~~~P~~ls~v~~~l~~~~l~~~DVAlI~as~aDe~Gnls~~~s~~~~--~~~a~aA~~VIveVn~ 161 (506)
T 2nvv_A 87 KDLRNLINNGSTSYFDLHLSTLAQDLRYGFYGKVDVAIIEVADVTEDGKILPTTGVGIL--PTICRLADRIIVELND 161 (506)
T ss_dssp HHHHHHHHTTSSEECCCCGGGHHHHHHTTSSCCCCEEEEEESEECTTSEEECCSBCBTH--HHHHHHCSEEEEEEET
T ss_pred HHHHHHHHcCCCeEeCCCcccHHHHHHcCCcCCCCEEEEEecccCCCceEEEeCCcCcH--HHHHHhCCcEEEEECC
Confidence 0113 589999999999999888655332222 4577899999999876
No 41
>2ahu_A Putative enzyme YDIF; COA transferase, glutamyl thioester, structural genomi montreal-kingston bacterial structural genomics initiative; 1.90A {Escherichia coli} SCOP: c.124.1.3 c.124.1.2 PDB: 2ahv_A* 2ahw_A*
Probab=95.40 E-value=0.01 Score=58.64 Aligned_cols=50 Identities=24% Similarity=0.323 Sum_probs=36.9
Q ss_pred HHHHHHHHhcCCCCCEEEECc---C-hHHHHHHHHHhchhh-cCCCCCeEEECCc
Q 023993 48 KLAADKAVDYVKSGMALGLGT---G-STAAFVVDRIGQLLK-TGELRDIVGIPTS 97 (274)
Q Consensus 48 ~~iA~~A~~~I~dg~vIgLGs---G-STv~~l~~~L~~~~~-~~~l~~itvVT~S 97 (274)
..=+++|+++|+|||+|++|+ + .+-..++++|.++.. .++.+++|+++++
T Consensus 15 ~~sa~eAv~~IkdG~tV~~gGf~~~~g~P~~li~aL~~~~~~~~~~~dLtlv~~~ 69 (531)
T 2ahu_A 15 VLSAQEAVNYIPDEATLCVLGAGGGILEATTLITALADKYKQTQTPRNLSIISPT 69 (531)
T ss_dssp BCCHHHHHTTCCTTCEEEECCCBTTTTCCHHHHHHHHHHHHHHCCSCSEEEEESS
T ss_pred cCCHHHHHhhCCCCCEEEECCcccccCcHHHHHHHHHHhHHhcCCCCCeEEEEec
Confidence 334677889999999999987 3 345778888876533 3456789999874
No 42
>3efb_A Probable SOR-operon regulator; alpha-beta-alpha sandwich, center for structural genomics of infectious diseases, csgid, transcription; HET: MSE; 2.00A {Shigella flexneri 2A} SCOP: c.124.1.8
Probab=95.39 E-value=0.016 Score=51.95 Aligned_cols=41 Identities=12% Similarity=0.256 Sum_probs=33.2
Q ss_pred ChHHHHHHHHHHHHhc----CCCCCEEEECcChHHHHHHHHHhch
Q 023993 42 TQDDLKKLAADKAVDY----VKSGMALGLGTGSTAAFVVDRIGQL 82 (274)
Q Consensus 42 ~~~~~K~~iA~~A~~~----I~dg~vIgLGsGSTv~~l~~~L~~~ 82 (274)
+.++.++.+|+.|+++ +++|++||++.|+|+..++++|...
T Consensus 38 ~~~~~~~~lg~~aA~~L~~~l~~~~vIGv~wG~Tl~~v~~~l~~~ 82 (266)
T 3efb_A 38 DEETQLAMMGLHGAQLLDRLLEPGDIVGFSWGRAVSALVENLPQA 82 (266)
T ss_dssp CHHHHHHHHHHHHHHHHHHHCCTTCEEEECCSHHHHHHHHTCCCC
T ss_pred ChHHHHHHHHHHHHHHHHHhCCCCCEEEEcccHHHHHHHHhcCcc
Confidence 4455667777777754 6899999999999999999999753
No 43
>1xr4_A Putative citrate lyase alpha chain/citrate-ACP TR; the midwest center for structural genomics, MCSG, structural genomics; 2.37A {Salmonella typhimurium} SCOP: c.124.1.2 c.124.1.2
Probab=95.23 E-value=0.15 Score=49.95 Aligned_cols=120 Identities=17% Similarity=0.200 Sum_probs=72.4
Q ss_pred CChHHHHHHHHHHHHhcC------CCCCEEEECcChHHHHHHHHHhchhh----------------------cCCCCCe-
Q 023993 41 LTQDDLKKLAADKAVDYV------KSGMALGLGTGSTAAFVVDRIGQLLK----------------------TGELRDI- 91 (274)
Q Consensus 41 ~~~~~~K~~iA~~A~~~I------~dg~vIgLGsGSTv~~l~~~L~~~~~----------------------~~~l~~i- 91 (274)
+..++.+++||+.|+++| +||+++=+|-|+....++.+|.+..+ .|.+.+.
T Consensus 244 ~~~~~~~~~IA~~~a~~i~~~g~~~dG~~lqlGIG~ip~aV~~~l~~~~~~l~i~se~g~~g~~d~~~~l~e~G~i~~~~ 323 (509)
T 1xr4_A 244 LSSNPRELLIARQAANVIEHSGYFCDGFSLQTGTGGASLAVTRFLEDKMRRHNITASFGLGGITGTMVDLHEKGLIKALL 323 (509)
T ss_dssp CCCCHHHHHHHHHHHHHHHTTSCCSTTEEEECCSSHHHHHHHHHHHHHHHHTTCCEEEEEEEECHHHHHHHHTTSBSCEE
T ss_pred CCCChHHHHHHHHHHHHHHhcCcCCCCCEEEeccChHHHHHHHHhhhhcccceeecccccCCcCCccHhHHhCCCccCCc
Confidence 344467889999999999 99999999999888888888876512 2222221
Q ss_pred EEECCcHHHHHHHHhCCCcEEEc-----------CCCCcccEEEEccCcccCCCCc----------ccCcchhHHHHHHH
Q 023993 92 VGIPTSKRTEEQAKSLNIPLTTL-----------DDHPSLDLAIDGADEVDPELNL----------VKGRGGALLREKMV 150 (274)
Q Consensus 92 tvVT~S~~ta~~l~~~gi~vi~l-----------~~~~~iD~afdGaD~Vd~~~~~----------ikg~gga~l~EKil 150 (274)
.+.+-.+-....+..+--.+... ....++|++|.||=+||..+++ ++|-||+.= +
T Consensus 324 ~~~~f~~g~~~~~~~n~~~~~~~~~~~~n~~~~~~~~~~ldiai~galevD~~G~vn~~~~~~g~~~~G~GG~~D----~ 399 (509)
T 1xr4_A 324 DTQSFDGDAARSLAQNPHHIEISTNQYANPASKGAACERLNVVMLSALEIDVNFNVNVMTGSNGVLRGASGGHSD----T 399 (509)
T ss_dssp EEEECSHHHHHHHHHCTTEEECCHHHHTCTTCSCCGGGGCSEEEECCSEECTTCCEECSBCTTSCBCSBCTTHHH----H
T ss_pred ceeEeeccHHHHHHhCCcceEEeccccccCcchhhhhcCCCeEEeeeEEEccCCceeeeeccCCeEecccccHHH----H
Confidence 12222222222221111001110 1124679999999999976544 223345542 3
Q ss_pred HHhcCcEEEEEcCC
Q 023993 151 EAASKSFVVVADES 164 (274)
Q Consensus 151 a~~S~~~IvLaD~s 164 (274)
+..|++.|+...++
T Consensus 400 ~~gA~~sii~~~~t 413 (509)
T 1xr4_A 400 AAGADLTIITAPLV 413 (509)
T ss_dssp HHHSSEEEEECCSE
T ss_pred hhccCeEEEEEccc
Confidence 45788888877664
No 44
>2hj0_A Putative citrate lyase, ALFA subunit; alpha beta protein., structural genomics, PSI-2, protein STR initiative; HET: CIT; 2.70A {Streptococcus mutans}
Probab=94.64 E-value=0.21 Score=49.05 Aligned_cols=110 Identities=22% Similarity=0.327 Sum_probs=70.1
Q ss_pred HHHHHHhc--CCCCCEEEECcCh-HHH----HHHHHHhchhhcCCCCCeEEECCcHHHH--H--HHHhCCC--cEEE---
Q 023993 50 AADKAVDY--VKSGMALGLGTGS-TAA----FVVDRIGQLLKTGELRDIVGIPTSKRTE--E--QAKSLNI--PLTT--- 113 (274)
Q Consensus 50 iA~~A~~~--I~dg~vIgLGsGS-Tv~----~l~~~L~~~~~~~~l~~itvVT~S~~ta--~--~l~~~gi--~vi~--- 113 (274)
=|++|+++ |+|||+|++|+.. +-. .++++|.++ +++++|++++|.-.. . .+...|. +++.
T Consensus 51 saeEAv~~~~IkdG~tV~~gGf~g~P~~l~~~Li~AL~~r----~~kdLtli~~s~g~~~~~l~~~~~~g~v~r~~~~~~ 126 (519)
T 2hj0_A 51 SIHEAIEKTRLKDGMTISFHHHFREGDYVMNMVLDEIAKM----GIKDISIAPSSIANVHEPLIDHIKNGVVTNITSSGL 126 (519)
T ss_dssp CHHHHHHHTTCCTTCEEEECCTTGGGBCHHHHHHHHHHHT----TCCSEEEEESCCCGGGTTHHHHHHTTSEEEEEESBC
T ss_pred CHHHHHhcCCCCCCCEEEECCccCCchHHHHHHHHHHHhc----CCCCeEEEeecCCCcchhHHhHhhcCcEEEEEecCC
Confidence 47778888 9999999999773 223 455556543 356899999865211 1 1112222 1221
Q ss_pred ------------------cCC-----------CCcccEEEEccCcccCCCCcc--cCcc--hhHHHHHHHHHhcCcEEEE
Q 023993 114 ------------------LDD-----------HPSLDLAIDGADEVDPELNLV--KGRG--GALLREKMVEAASKSFVVV 160 (274)
Q Consensus 114 ------------------l~~-----------~~~iD~afdGaD~Vd~~~~~i--kg~g--ga~l~EKila~~S~~~IvL 160 (274)
+.+ ...+|+||..+...|.++++. .+.. ++.-.-+.++++|+.+|+-
T Consensus 127 g~~~r~~i~~G~~~~P~~l~~~gG~~~ll~~~~l~~DVAlI~as~aD~~Gnls~~~g~s~~~s~~~~~~~a~~A~~VIaE 206 (519)
T 2hj0_A 127 RDKVGAAISEGIMENPVIIRSHGGRARAIATDDIHIDVAFLGAPSSDAYGNANGTRGKTTCGSLGYAMIDAKYADQVVIV 206 (519)
T ss_dssp HHHHHHHHHTTCCSSCEEECCHHHHHHHHHHTSSCCSEEEEEESEECTTSCEESSSSSSCCSCCHHHHHHHHHCSEEEEE
T ss_pred CcHHHHHHHCCCCCCCceeeccCCHHHHHhcCCCCCcEEEEEecccCCCCcEEEecCccccccchhhHHHHhhCCEEEEE
Confidence 111 136899999999999998886 3422 2222235778899999998
Q ss_pred EcC
Q 023993 161 ADE 163 (274)
Q Consensus 161 aD~ 163 (274)
+++
T Consensus 207 Vn~ 209 (519)
T 2hj0_A 207 TDT 209 (519)
T ss_dssp ESS
T ss_pred eCC
Confidence 876
No 45
>1w2w_B 5-methylthioribose-1-phosphate isomerase; EIF2B, methionine salvage pathway, translation initiation, oxidoreductase; 1.75A {Saccharomyces cerevisiae} SCOP: c.124.1.5
Probab=94.44 E-value=0.037 Score=47.65 Aligned_cols=82 Identities=21% Similarity=0.167 Sum_probs=54.4
Q ss_pred HHHHHHhCCCcEEEcCCC--------Cc--ccEEEEccCcccCCCCcccCcchhHHHHHHHHHhcCcEEEEEcCCccccc
Q 023993 100 TEEQAKSLNIPLTTLDDH--------PS--LDLAIDGADEVDPELNLVKGRGGALLREKMVEAASKSFVVVADESKLVSG 169 (274)
Q Consensus 100 ta~~l~~~gi~vi~l~~~--------~~--iD~afdGaD~Vd~~~~~ikg~gga~l~EKila~~S~~~IvLaD~sK~~~~ 169 (274)
++.+|.+.||++..+... .. +|++|.|||.|-.+++++.--|...+- -+..+....+|+++..+||...
T Consensus 22 ta~eL~~~gI~vtlI~Dsa~~~~m~~~~~~Vd~VivGAd~v~~nG~v~nkiGT~~~A-l~Ak~~~vPf~V~a~~~k~~~~ 100 (191)
T 1w2w_B 22 TAYELVYDKIPSTLITDSSIAYRIRTSPIPIKAAFVGADRIVRNGDTANKIGTLQLA-VICKQFGIKFFVVAPKTTIDNV 100 (191)
T ss_dssp HHHHHHHHTCCBEEBCGGGHHHHHHHCSSCEEEEEECCSEECTTSCEEEETTHHHHH-HHHHHHTCEEEEECCGGGBCSS
T ss_pred HHHHHHHcCCCEEEEechHHHHHHHhCCCCCCEEEECccEEecCCCEEecccHHHHH-HHHHHcCCCEEEecccceeeec
Confidence 455666667766554321 12 999999999999898775333333332 2334567899999999999876
Q ss_pred CCCCcccccEEEec
Q 023993 170 LGGSKLAMPVEVVQ 183 (274)
Q Consensus 170 Lg~~~~plPvEV~p 183 (274)
.. ....+|+|--+
T Consensus 101 ~~-~g~~i~iE~r~ 113 (191)
T 1w2w_B 101 TE-TGDDIIVEERN 113 (191)
T ss_dssp CC-SGGGCCCCBCC
T ss_pred cC-CcceeecccCC
Confidence 42 13468888654
No 46
>3k6m_A Succinyl-COA:3-ketoacid-coenzyme A transferase 1, mitochondrial; SCOT, COA transferase, dynamic domain, glycerol, mitochondri transferase; 1.50A {Sus scrofa} PDB: 1m3e_A* 1o9l_A 1ooy_A 2nrc_A 2nrb_A 3oxo_A* 1ooz_A 1ope_A 3dlx_A
Probab=94.38 E-value=0.085 Score=51.49 Aligned_cols=111 Identities=20% Similarity=0.244 Sum_probs=65.8
Q ss_pred HHHHHHHHHHHHhcCCCCCEEEECcChHHHHHHHHHhchhhcCCCCCeEEECCcHHHH-----------HHHHhCC---C
Q 023993 44 DDLKKLAADKAVDYVKSGMALGLGTGSTAAFVVDRIGQLLKTGELRDIVGIPTSKRTE-----------EQAKSLN---I 109 (274)
Q Consensus 44 ~~~K~~iA~~A~~~I~dg~vIgLGsGSTv~~l~~~L~~~~~~~~l~~itvVT~S~~ta-----------~~l~~~g---i 109 (274)
.+.++.||++|+..|+||++|.||-| .-..++.++.+. .++++.+-+-..- ..+...| +
T Consensus 260 ~~~~~~Ia~raA~el~dG~~vnlGIG-iP~~v~~~~~~~------~~l~l~~E~G~~g~~p~~~~~~~d~~~in~Gk~~~ 332 (481)
T 3k6m_A 260 DNVRERIIKRAALEFEDGMYANLGIG-IPLLASNFISPN------MTVHLQSENGILGLGPYPLQNEVDADLINAGKETV 332 (481)
T ss_dssp --CHHHHHHHHGGGCCTTEEEEECTT-HHHHHGGGCCTT------SCEEEEETTTEEEECCCCCGGGCCTTCBCTTSBBC
T ss_pred CCHHHHHHHHHHHhcCCCCEEEEccC-HHHHHHhhhccC------CcEEEEECCcEeCCccCCCCCccCcccccCCCceE
Confidence 35688899999999999999999999 444555555432 2454443211000 0001112 1
Q ss_pred cEEE----cC--------CCCcccEEEEccCcccCCCCc---------ccCcchhHHHHHHHHHhc-CcEEEEEcCCc
Q 023993 110 PLTT----LD--------DHPSLDLAIDGADEVDPELNL---------VKGRGGALLREKMVEAAS-KSFVVVADESK 165 (274)
Q Consensus 110 ~vi~----l~--------~~~~iD~afdGaD~Vd~~~~~---------ikg~gga~l~EKila~~S-~~~IvLaD~sK 165 (274)
.... ++ ...++|++|.|+-+||..+++ ++|.||+.- +...| +++|+...|+.
T Consensus 333 t~~~g~~~~~~~~~F~~~~gG~~Dv~ilga~qVD~~Gnvn~~~~pg~~~~G~GG~~D----~~~ga~~k~ii~~~~t~ 406 (481)
T 3k6m_A 333 TVLPGASYFSSDESFAMIRGGHVNLTMLGAMQVSKYGDLANWMIPGKLVKGMGGAMD----LVSSAKTKVVVTMEHSA 406 (481)
T ss_dssp CEEEEEEECCHHHHHHHHHTTCCSEEEECCSEEETTCCEECSCBTTTBCSCCTTHHH----HTCCTTSEEEEECCSBC
T ss_pred eccccceecCCHHHeeeecCCCeEEEEechHhccCCCCccccccCCceeecCCcchh----hhccCCceEEEEEeeEc
Confidence 1110 11 114789999999999975543 445566652 34567 58888877764
No 47
>2hj0_A Putative citrate lyase, ALFA subunit; alpha beta protein., structural genomics, PSI-2, protein STR initiative; HET: CIT; 2.70A {Streptococcus mutans}
Probab=94.17 E-value=0.31 Score=47.88 Aligned_cols=42 Identities=24% Similarity=0.334 Sum_probs=34.5
Q ss_pred CChHHHHHHHHHHHHhcC------CCCCEEEECcChHHHHHHHHHhch
Q 023993 41 LTQDDLKKLAADKAVDYV------KSGMALGLGTGSTAAFVVDRIGQL 82 (274)
Q Consensus 41 ~~~~~~K~~iA~~A~~~I------~dg~vIgLGsGSTv~~l~~~L~~~ 82 (274)
...++.+++||+.|+++| +||+++-+|-|+....++.+|.++
T Consensus 247 ~~~~~~~~~IA~~~a~~i~~~g~l~dG~~lqlGiG~ip~aV~~~L~~~ 294 (519)
T 2hj0_A 247 YTKNPKELLIAEYAAKVITSSPYYKEGFSFQTGTGGASLAVTRFMREQ 294 (519)
T ss_dssp CCCCHHHHHHHHHHHHHHHTSTTCSTTCEEECCSSHHHHHHHHHHHHH
T ss_pred CCCChHHHHHHHHHHHHHHhcccCCCCCEEEeccChHHHHHHHHHhhh
Confidence 344466888999999885 999999999998777788888765
No 48
>2ahu_A Putative enzyme YDIF; COA transferase, glutamyl thioester, structural genomi montreal-kingston bacterial structural genomics initiative; 1.90A {Escherichia coli} SCOP: c.124.1.3 c.124.1.2 PDB: 2ahv_A* 2ahw_A*
Probab=93.43 E-value=0.22 Score=49.09 Aligned_cols=107 Identities=21% Similarity=0.243 Sum_probs=64.5
Q ss_pred HHHHHHHHHHhcCCCCCEEEECcChHHHHHHHHHhch-hhcCCCCCeEEECCc-----HHHHHHHHhCCCcE--EE-cC-
Q 023993 46 LKKLAADKAVDYVKSGMALGLGTGSTAAFVVDRIGQL-LKTGELRDIVGIPTS-----KRTEEQAKSLNIPL--TT-LD- 115 (274)
Q Consensus 46 ~K~~iA~~A~~~I~dg~vIgLGsGSTv~~l~~~L~~~-~~~~~l~~itvVT~S-----~~ta~~l~~~gi~v--i~-l~- 115 (274)
.++.||+.++++|+||+++-+|-| ....++.+|.+. .. +++++.+-+ ...... ..++.+ .. ++
T Consensus 287 ~~~~Ia~~~A~~i~dG~~v~lGiG-iP~av~~~l~~~~~~----~~l~~~~E~G~~g~~~~~g~--~~g~~~~~~~~~~~ 359 (531)
T 2ahu_A 287 QRKLVARRALFEMRKGAVGNVGVG-IADGIGLVAREEGCA----DDFILTVETGPIGGITSQGI--AFGANVNTRAILDM 359 (531)
T ss_dssp HHHHHHHHHHTTCCTTCEEEECSS-TTTTHHHHHHHHTCG----GGSEEBCTTSEESCBCC-------CCCBSCSEECCH
T ss_pred HHHHHHHHHHHhccCCCEEEecCc-HHHHHHHHHHhcCCC----CCeEEEEccceecCccCCCc--cceeEECHHHhcch
Confidence 367899999999999999999999 555677777652 10 133332210 000000 001100 00 00
Q ss_pred -------CCCcccEEEEccCcccCCCCc--------ccCcchhHHHHHHHHHhcCcEEEEEcC
Q 023993 116 -------DHPSLDLAIDGADEVDPELNL--------VKGRGGALLREKMVEAASKSFVVVADE 163 (274)
Q Consensus 116 -------~~~~iD~afdGaD~Vd~~~~~--------ikg~gga~l~EKila~~S~~~IvLaD~ 163 (274)
...++|++|.|+-+||..+++ +.|.||+.- ++..|+++|+...+
T Consensus 360 ~~~f~~~~~g~vdvailga~eVD~~Gnvn~~~~G~~~~G~GG~~D----~~~gA~~~i~~~~~ 418 (531)
T 2ahu_A 360 TSQFDFYHGGGLDVCYLSFAEVDQHGNVGVHKFNGKIMGTGGFID----ISATSKKIIFCGTL 418 (531)
T ss_dssp HHHHHHHHTTCCSEEEEECSEEETTSCEECSEETTEECBCTTHHH----HHTTCSEEEEECCS
T ss_pred hhhhheecCCCeEEEEeChHHhCCCCcchhhccCCceecCCcchh----hhcCCCeEEEEecc
Confidence 124789999999999987654 345456552 35678888888764
No 49
>2gnp_A Transcriptional regulator; structural genomics, MCSG, APC84799, streptococcus pneumonia PSI, protein structure initiative; 1.65A {Streptococcus pneumoniae} SCOP: c.124.1.8
Probab=93.24 E-value=0.11 Score=46.29 Aligned_cols=46 Identities=22% Similarity=0.357 Sum_probs=35.0
Q ss_pred HHHHHHHHHH----hcCCCCCEEEECcChHHHHHHHHHhchhhcCCCCCeEEEC
Q 023993 46 LKKLAADKAV----DYVKSGMALGLGTGSTAAFVVDRIGQLLKTGELRDIVGIP 95 (274)
Q Consensus 46 ~K~~iA~~A~----~~I~dg~vIgLGsGSTv~~l~~~L~~~~~~~~l~~itvVT 95 (274)
.++.++++|+ ++++++++|||++|+|...++++|... ..+++++|+
T Consensus 39 ~~~~l~~~aA~~l~~~l~~~~viGla~G~T~~~~~~~l~~~----~~~~v~~v~ 88 (266)
T 2gnp_A 39 LSERISQVAAGVLRNLIDDNMKIGFSWGKSLSNLVDLIHSK----SVRNVHFYP 88 (266)
T ss_dssp HHHHHHHHHHHHHHHHCCTTCEEEECCSHHHHHHHHHCCCC----CCSSCEEEE
T ss_pred HHHHHHHHHHHHHHHhCCCCCEEEECChHHHHHHHHhcccc----CCCCCEEEE
Confidence 4566777666 456899999999999999999999753 124677764
No 50
>3gk7_A 4-hydroxybutyrate COA-transferase; alpha/beta protein; HET: SPD; 1.85A {Clostridium aminobutyricum} PDB: 3qdq_A*
Probab=92.14 E-value=0.87 Score=43.95 Aligned_cols=42 Identities=14% Similarity=0.304 Sum_probs=36.6
Q ss_pred CChHHHHHHHHHHHHhcCCCCCEEEECcChHHHHHHHHHhch
Q 023993 41 LTQDDLKKLAADKAVDYVKSGMALGLGTGSTAAFVVDRIGQL 82 (274)
Q Consensus 41 ~~~~~~K~~iA~~A~~~I~dg~vIgLGsGSTv~~l~~~L~~~ 82 (274)
...++..++||+.++++|+||+++=+|-|+....++.+|.+.
T Consensus 189 ~~~~~~~~~IA~~~a~~i~dG~~lqlGIG~ip~aV~~~L~~~ 230 (448)
T 3gk7_A 189 PKIGEVEAAIGKHCASLIEDGSTLQLGIGAIPDAVLSQLKDK 230 (448)
T ss_dssp CCCCHHHHHHHHHHHTTCCTTCEEEBCSSHHHHHHHHTCTTC
T ss_pred CCCCcHHHHHHHHHHHHccCCCEEEeccCcHHHHHHHHhhhc
Confidence 445577888999999999999999999999888888988763
No 51
>2okg_A Central glycolytic gene regulator; alpha/beta/alpha sandwich, rossmann-like fold, structural genomics, PSI-2, protein structure initiative; HET: MSE G3H; 1.65A {Bacillus subtilis} SCOP: c.124.1.8 PDB: 3bxe_A* 3bxf_A* 3bxg_A* 3bxh_A*
Probab=92.02 E-value=0.12 Score=45.75 Aligned_cols=46 Identities=22% Similarity=0.222 Sum_probs=33.9
Q ss_pred HHHHHHHHH----hcCCCCCEEEECcChHHHHHHHHHhchhhcCCCCCeEEEC
Q 023993 47 KKLAADKAV----DYVKSGMALGLGTGSTAAFVVDRIGQLLKTGELRDIVGIP 95 (274)
Q Consensus 47 K~~iA~~A~----~~I~dg~vIgLGsGSTv~~l~~~L~~~~~~~~l~~itvVT 95 (274)
++.++++|+ +.++++++|||++|+|...++++|..... .+++++|+
T Consensus 39 ~~~l~~~aA~~l~~~l~~~~viGla~G~T~~~~~~~l~~~~~---~~~v~~v~ 88 (255)
T 2okg_A 39 KKEMGRAAVACMKKRFSGKNIVAVTGGTTIEAVAEMMTPDSK---NRELLFVP 88 (255)
T ss_dssp HHHHHHHHHHHHHHHCCSEEEEEECCSHHHHHHHHHCCCCTT---CCEEEEEE
T ss_pred HHHHHHHHHHHHHHhCCCCCEEEECCcHHHHHHHHhhccccC---CCCCEEEE
Confidence 455666655 55689999999999999999999975311 24677664
No 52
>2r5f_A Transcriptional regulator, putative; transcription regulator, sugar-binding domain, structural GE PFAM04198, PSI-2; 2.10A {Pseudomonas syringae PV} SCOP: c.124.1.8
Probab=90.56 E-value=0.28 Score=43.65 Aligned_cols=47 Identities=13% Similarity=0.090 Sum_probs=33.9
Q ss_pred HHHHHHHHHH----hcCCCCCEEEEC-cChHHHHHHHHHhchhhcCCCC-CeEEEC
Q 023993 46 LKKLAADKAV----DYVKSGMALGLG-TGSTAAFVVDRIGQLLKTGELR-DIVGIP 95 (274)
Q Consensus 46 ~K~~iA~~A~----~~I~dg~vIgLG-sGSTv~~l~~~L~~~~~~~~l~-~itvVT 95 (274)
.++.++++|+ +.++++++|||+ +|+|...++++|...-. .+ ++++|+
T Consensus 39 ~~~~l~~~aA~~l~~~l~~~~viGla~~G~T~~~~~~~l~~~~~---~~~~v~~v~ 91 (264)
T 2r5f_A 39 IKQAIGSAAAHYLETSLSAQDHIGISSWSSTIRAMVSHMHPQPG---KQSAQEVVQ 91 (264)
T ss_dssp HHHHHHHHHHHHHHHHCCTTCEEEECTTCHHHHHHHHTCCC--C---CCCCSEEEE
T ss_pred HHHHHHHHHHHHHHHhCCCCCEEEECcchHHHHHHHHhhccccC---CCCCcEEEE
Confidence 4566777666 456899999999 99999999999975311 13 566654
No 53
>2oas_A ATOA, 4-hydroxybutyrate coenzyme A transferase; alpha beta protein, structural genomics, PSI-2, protein STRU initiative; HET: COA; 2.40A {Shewanella oneidensis}
Probab=89.11 E-value=0.76 Score=44.03 Aligned_cols=42 Identities=19% Similarity=0.295 Sum_probs=36.8
Q ss_pred CChHHHHHHHHHHHHhcCCCCCEEEECcChHHHHHHHHHhch
Q 023993 41 LTQDDLKKLAADKAVDYVKSGMALGLGTGSTAAFVVDRIGQL 82 (274)
Q Consensus 41 ~~~~~~K~~iA~~A~~~I~dg~vIgLGsGSTv~~l~~~L~~~ 82 (274)
+...+.+++||+.|+++|+||+++=+|-|+....++.+|.++
T Consensus 184 ~~~~~~~~~Ia~~~a~~i~dg~~lqlGiG~ip~av~~~l~~~ 225 (436)
T 2oas_A 184 ATGDAVSLAIGQHVAELVRDGDCLQMGIGAIPDAVLSCLTGH 225 (436)
T ss_dssp CCCCHHHHHHHHHHHHHCCTTCEEECCSSHHHHHHHHTCTTC
T ss_pred CCCChHHHHHHHHHHHhcCCCCEEeecCcHHHHHHHHHHhhc
Confidence 344567888999999999999999999999999999988765
No 54
>3k6m_A Succinyl-COA:3-ketoacid-coenzyme A transferase 1, mitochondrial; SCOT, COA transferase, dynamic domain, glycerol, mitochondri transferase; 1.50A {Sus scrofa} PDB: 1m3e_A* 1o9l_A 1ooy_A 2nrc_A 2nrb_A 3oxo_A* 1ooz_A 1ope_A 3dlx_A
Probab=84.83 E-value=0.9 Score=44.24 Aligned_cols=43 Identities=12% Similarity=0.220 Sum_probs=33.2
Q ss_pred HHHHHhcCCCCCEEEECcC---hHHHHHHHHHhchhhcCCCCCeEEECCc
Q 023993 51 ADKAVDYVKSGMALGLGTG---STAAFVVDRIGQLLKTGELRDIVGIPTS 97 (274)
Q Consensus 51 A~~A~~~I~dg~vIgLGsG---STv~~l~~~L~~~~~~~~l~~itvVT~S 97 (274)
+++|++.|+|||+|.+|+- .+-..++++|.++ +.+++|+|.|+
T Consensus 7 ~~eAv~~I~DG~ti~~gGf~~~g~P~~li~al~~~----~~kdLt~v~~~ 52 (481)
T 3k6m_A 7 AVEAVKDIPNGATVLVGGFGLCGIPENLIGALLKT----GVKELTAVSNN 52 (481)
T ss_dssp HHHHHTTCCTTCEEEECCBTTBTCCHHHHHHHHHH----CCCSEEEECSC
T ss_pred HHHHHhhCCCCCEEEECCccccCcHHHHHHHHHHc----CCCceEEEEeC
Confidence 5678889999999999972 2457788888754 23699999885
No 55
>2jsx_A Protein NAPD; TAT, proofreading, cytoplasm, chaperone; NMR {Escherichia coli K12} PDB: 2pq4_A
Probab=84.78 E-value=1.5 Score=33.39 Aligned_cols=71 Identities=15% Similarity=0.144 Sum_probs=51.3
Q ss_pred cccEEEecccHHHHHHHHHHhHhhcCCeeEEeecCCCCceEeC-CCCEEEEeeCCCCCCChHHHHHHhcCCCcEEeeecc
Q 023993 176 AMPVEVVQFCWKFNLVRLQDLFRELGCEAKLREGENGKPYITD-NFNYIIDLYFETPIKDGVSAGTEIGKLEGVVEHGLF 254 (274)
Q Consensus 176 plPvEV~p~a~~~v~~~l~~l~~~~g~~~~lR~~~~~gp~vTd-nGN~IlD~~f~~~i~d~~~l~~~l~~ipGVVe~GlF 254 (274)
.+-|.+.|.....|.++|.++ .|++. ...++ .|.+|+=+--++ ..+..+.-..|+.+|||..+.|-
T Consensus 9 slvV~~~p~~~~~V~~~L~~i---pgvEi---------~~~~~~~GkiVV~iEa~~-~~~l~~~i~~I~~i~GVlst~lv 75 (95)
T 2jsx_A 9 SLVVQAKSERISDISTQLNAF---PGCEV---------AVSDAPSGQLIVVVEAED-SETLIQTIESVRNVEGVLAVSLV 75 (95)
T ss_dssp EEEEEECTTSHHHHHHHHTTS---TTEEE---------EEEETTTTEEEEEEEESS-HHHHHHHHHHHTTSTTEEEEEES
T ss_pred EEEEEECCCCHHHHHHHHHCC---CCeEE---------EEecCCCCCEEEEEEeCC-HHHHHHHHHHHhcCCCccEEeEE
Confidence 366888899999999999887 25543 23443 688887555443 55566666888999999999987
Q ss_pred ccccc
Q 023993 255 LDMAT 259 (274)
Q Consensus 255 ~~~a~ 259 (274)
....+
T Consensus 76 y~~~e 80 (95)
T 2jsx_A 76 YHQQE 80 (95)
T ss_dssp SCCCC
T ss_pred EEEec
Confidence 75443
No 56
>3qli_A Coenzyme A transferase; COEN transferase; 1.90A {Yersinia pestis} PDB: 3qlk_A 3s8d_A
Probab=84.04 E-value=1.4 Score=42.58 Aligned_cols=48 Identities=17% Similarity=0.160 Sum_probs=40.1
Q ss_pred ChHHHHHHHHHHHHhcCCCCCEEEECcChHHHHHHHHHhchhhcCCCCCeEEEC
Q 023993 42 TQDDLKKLAADKAVDYVKSGMALGLGTGSTAAFVVDRIGQLLKTGELRDIVGIP 95 (274)
Q Consensus 42 ~~~~~K~~iA~~A~~~I~dg~vIgLGsGSTv~~l~~~L~~~~~~~~l~~itvVT 95 (274)
..++..++||+.++++|+||.++=+|-|+....++.+|.++ +++.+-|
T Consensus 216 ~~~~~~~~Ia~~va~~i~dG~~lQ~GiG~ip~Av~~~L~~~------~~lgi~t 263 (455)
T 3qli_A 216 SAIPEYTSISHIIADLVPDGACLQMGVGALPNLVCGVLKDR------NDLGIHT 263 (455)
T ss_dssp CCCTHHHHHHHHHHHTCCTTCEEEECSSHHHHHHHHHGGGC------CSBEEBC
T ss_pred CCChHHHHHHHHHHHHhcCCCeEEeccchHHHHHHHhcCcC------CCeEEEc
Confidence 34466788999999999999999999999999999999875 4666544
No 57
>1stz_A Heat-inducible transcription repressor HRCA homol; circe element, structural genomics, BSGC structure FUN NIH, protein structure initiative; 2.20A {Thermotoga maritima} SCOP: a.4.5.51 d.110.2.3
Probab=82.06 E-value=0.15 Score=47.33 Aligned_cols=47 Identities=4% Similarity=-0.094 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHhcCCCCCEEEECcChHHHHHHHHHhchhhcCCCCCeEEECCcHHH-HHHH
Q 023993 45 DLKKLAADKAVDYVKSGMALGLGTGSTAAFVVDRIGQLLKTGELRDIVGIPTSKRT-EEQA 104 (274)
Q Consensus 45 ~~K~~iA~~A~~~I~dg~vIgLGsGSTv~~l~~~L~~~~~~~~l~~itvVT~S~~t-a~~l 104 (274)
++|++||++|++ +++ +.|||+.++++.|.+. .++|+|+|+... +..+
T Consensus 100 ~eK~~Ia~~aa~---~~~----d~gtt~~~~a~~Ls~~------~~~tvv~~~~~~~~~~L 147 (338)
T 1stz_A 100 EADLAVETFKSM---PLA----DPEKVLFLAGNLLARL------TEGYVLIERPNTRDLKI 147 (338)
T ss_dssp CCCHHHHTCCCT---TBC----CHHHHHHHHHHHHHHH------HTCEEEEECCCGGGCBC
T ss_pred HHHHHHHHHHhh---cCC----CHHHHHHHHHHHHhcc------CCeEEEEeCCHHHHHHh
Confidence 568899988765 666 9999999999999864 368988888753 4444
No 58
>2cvi_A 75AA long hypothetical regulatory protein ASNC; structural genomics, unknown function; 1.50A {Pyrococcus horikoshii} PDB: 2z4p_A 2e1a_A
Probab=79.58 E-value=1.5 Score=31.58 Aligned_cols=64 Identities=14% Similarity=0.135 Sum_probs=44.7
Q ss_pred ccEEEecccHHHHHHHHHHhHhhcCCeeEEeecCCCCceEeCCCCEEEEeeCCCCCCChHHHHH-HhcCCCcEEeee
Q 023993 177 MPVEVVQFCWKFNLVRLQDLFRELGCEAKLREGENGKPYITDNFNYIIDLYFETPIKDGVSAGT-EIGKLEGVVEHG 252 (274)
Q Consensus 177 lPvEV~p~a~~~v~~~l~~l~~~~g~~~~lR~~~~~gp~vTdnGN~IlD~~f~~~i~d~~~l~~-~l~~ipGVVe~G 252 (274)
+=|.+.|.....+.+.|.++ |+++.. ..+|-+.+|++-+.+.+ ..+.+++-. .|..+|||..+-
T Consensus 6 v~v~~~~~~~~~~~~~l~~~-------peV~e~----~~vtG~~D~ll~v~~~d-~~~l~~~i~~~l~~~~gV~~~~ 70 (83)
T 2cvi_A 6 ILMVTAAGKEREVMEKLLAM-------PEVKEA----YVVYGEYDLIVKVETDT-LKDLDQFITEKIRKMPEIQMTS 70 (83)
T ss_dssp EEEEECTTCHHHHHHHHHTS-------TTEEEE----EECBSSCSEEEEEEESS-HHHHHHHHHTTGGGCTTEEEEE
T ss_pred EEEEEcCCCHHHHHHHHhCC-------CCeeEE----EEEcccCCEEEEEEECC-HHHHHHHHHHHhccCCCEeEEE
Confidence 33566677778888888765 344432 46787889999999865 556666554 677899997753
No 59
>3eh7_A 4-hydroxybutyrate COA-transferase; citrate lyase, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.05A {Porphyromonas gingivalis}
Probab=79.05 E-value=2.5 Score=40.51 Aligned_cols=42 Identities=12% Similarity=0.236 Sum_probs=36.1
Q ss_pred CChHHHHHHHHHHHHhcCCCCCEEEECcChHHHHHHHHHhch
Q 023993 41 LTQDDLKKLAADKAVDYVKSGMALGLGTGSTAAFVVDRIGQL 82 (274)
Q Consensus 41 ~~~~~~K~~iA~~A~~~I~dg~vIgLGsGSTv~~l~~~L~~~ 82 (274)
...++..++||+.|+++|+||+++=+|-|+....++..|.+.
T Consensus 193 ~~~~~~~~~Ia~~~a~~i~dG~~lq~GiG~ip~AV~~~L~~~ 234 (434)
T 3eh7_A 193 PKIGEVEEAIGRNCAELIEDGATLQLGIGAIPDAALLFLKDK 234 (434)
T ss_dssp CCCCHHHHHHHHHHHHTCCTTCEEECCSSHHHHHHHHTTTTC
T ss_pred CCCChHHHHHHHHHHHhccCCCEEEeccchHHHHHHHHhhhc
Confidence 344577888999999999999999999999888888888753
No 60
>1fs5_A Glucosamine-6-phosphate deaminase; allosteric enzyme, entropic effects, aldose-ketose isomerase multiple conformers, isomerase; HET: 16G TLA; 1.73A {Escherichia coli} SCOP: c.124.1.1 PDB: 1cd5_A 1fqo_A* 1frz_A* 1dea_A* 1fs6_A 1fsf_A 1hor_A* 1hot_A* 2wu1_A* 1jt9_A
Probab=78.65 E-value=1.6 Score=38.30 Aligned_cols=34 Identities=26% Similarity=0.462 Sum_probs=25.4
Q ss_pred CCEEEECcChHHHHHHHHHhchhhcCC--CCCeEEE
Q 023993 61 GMALGLGTGSTAAFVVDRIGQLLKTGE--LRDIVGI 94 (274)
Q Consensus 61 g~vIgLGsGSTv~~l~~~L~~~~~~~~--l~~itvV 94 (274)
+++|||.+|||...+.++|.+..+.+. ..+++++
T Consensus 34 ~~~i~lsgGsTp~~~~~~L~~~~~~~~~~~~~v~v~ 69 (266)
T 1fs5_A 34 PFVLGLPTGGTPMTTYKALVEMHKAGQVSFKHVVTF 69 (266)
T ss_dssp CEEEEECCSSTTHHHHHHHHHHHHTTSCCCTTEEEE
T ss_pred ceEEEEcCCCCHHHHHHHHHHHhhcCCCChHHeEEE
Confidence 789999999999999999976322222 2467766
No 61
>2bkx_A Glucosamine-6-phosphate deaminase; hydrolase, substrate inhibition, fructose-6-phosphate; HET: F6R; 1.4A {Bacillus subtilis} PDB: 2bkv_A*
Probab=78.00 E-value=1.8 Score=37.22 Aligned_cols=47 Identities=28% Similarity=0.401 Sum_probs=30.1
Q ss_pred HHHHHHHHhcCC--CCCEEEECcChHHHHHHHHHhchhhcCC--CCCeEEE
Q 023993 48 KLAADKAVDYVK--SGMALGLGTGSTAAFVVDRIGQLLKTGE--LRDIVGI 94 (274)
Q Consensus 48 ~~iA~~A~~~I~--dg~vIgLGsGSTv~~l~~~L~~~~~~~~--l~~itvV 94 (274)
+++|+.-.+.++ ++++|||.+|||...+.++|.+..+.+. ..+++++
T Consensus 14 ~~aA~~l~~~i~~~~~~~i~lsgG~T~~~~~~~L~~~~~~~~~~~~~v~v~ 64 (242)
T 2bkx_A 14 QIAARITADTIKEKPDAVLGLATGGTPEGTYRQLIRLHQTENLSFQNITTV 64 (242)
T ss_dssp HHHHHHHHHHHHHCTTCEEEECCSSTTHHHHHHHHHHHHHSCCCCTTCEEE
T ss_pred HHHHHHHHHHHHHCCCeEEEECCCCCHHHHHHHHHHHhhccCCChhheEEE
Confidence 334444444444 4789999999999999999974322221 2356665
No 62
>2ri0_A Glucosamine-6-phosphate deaminase; carbohydrate metabolism,; HET: BTB; 1.60A {Streptococcus mutans} PDB: 2ri1_A*
Probab=74.52 E-value=3.4 Score=35.33 Aligned_cols=46 Identities=28% Similarity=0.333 Sum_probs=29.7
Q ss_pred HHHHHHHHhcCC-CCCEEEECcChHHHHHHHHHhchhhcCCCCCeEEEC
Q 023993 48 KLAADKAVDYVK-SGMALGLGTGSTAAFVVDRIGQLLKTGELRDIVGIP 95 (274)
Q Consensus 48 ~~iA~~A~~~I~-dg~vIgLGsGSTv~~l~~~L~~~~~~~~l~~itvVT 95 (274)
+++|+.-.+.++ .+++|||.+|+|...+.++|.+. .-...+++++.
T Consensus 15 ~~aA~~l~~~i~~~~~~i~ls~G~T~~~~~~~L~~~--~~~~~~v~v~~ 61 (234)
T 2ri0_A 15 KVAFRMLEEEITFGAKTLGLATGSTPLELYKEIRES--HLDFSDMVSIN 61 (234)
T ss_dssp HHHHHHHHHHHHTTCCEEEECCSSTTHHHHHHHHTS--CCCCTTCEEEE
T ss_pred HHHHHHHHHHHHhCCCEEEEcCCCCHHHHHHHHHhc--CCChhheEEEe
Confidence 334444444455 45799999999999999999742 00123566664
No 63
>1ne7_A Glucosamine-6-phosphate isomerase; V-type like allosteric enzyme, conformational disorder, conformational differences, hydrolase; HET: GLC 16G AGP; 1.75A {Homo sapiens} SCOP: c.124.1.1
Probab=74.17 E-value=3.2 Score=37.07 Aligned_cols=34 Identities=29% Similarity=0.416 Sum_probs=24.7
Q ss_pred CEEEECcChHHHHHHHHHhchhhcCCC--CCeEEEC
Q 023993 62 MALGLGTGSTAAFVVDRIGQLLKTGEL--RDIVGIP 95 (274)
Q Consensus 62 ~vIgLGsGSTv~~l~~~L~~~~~~~~l--~~itvVT 95 (274)
.+|||.+|||...+.++|.+..+.+.+ .+++++.
T Consensus 35 ~~lglsgGsTp~~~~~~L~~~~~~~~i~~~~v~v~~ 70 (289)
T 1ne7_A 35 FTLGLPTGSTPLGCYKKLIEYYKNGDLSFKYVKTFN 70 (289)
T ss_dssp EEEEECCSHHHHHHHHHHHHHHHTTSCCCTTEEEEE
T ss_pred EEEEEcCCccHHHHHHHHHhhhhccCCCchheEEEe
Confidence 699999999999999999854322222 3666653
No 64
>2cyy_A Putative HTH-type transcriptional regulator PH151; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2
Probab=73.90 E-value=1.6 Score=34.84 Aligned_cols=83 Identities=14% Similarity=0.122 Sum_probs=54.6
Q ss_pred cEEEEEcCCcccccCCCCcccccEEEecccHHHHHHHHHHhHhhcCCeeEEeecCCCCceEeCCCCEEEEeeCCCCCCCh
Q 023993 156 SFVVVADESKLVSGLGGSKLAMPVEVVQFCWKFNLVRLQDLFRELGCEAKLREGENGKPYITDNFNYIIDLYFETPIKDG 235 (274)
Q Consensus 156 ~~IvLaD~sK~~~~Lg~~~~plPvEV~p~a~~~v~~~l~~l~~~~g~~~~lR~~~~~gp~vTdnGN~IlD~~f~~~i~d~ 235 (274)
++....|..|++..+ ..-+-+.+.|.....+.+.|.++ +.++. -..+|-..|+++-+.+.+ ..+.
T Consensus 53 ~~~~~~d~~~~G~~~---~a~v~v~~~~~~~~~~~~~l~~~-------p~V~~----~~~~tG~~d~~~~v~~~d-~~~l 117 (151)
T 2cyy_A 53 KFTAIIDPEALGYSM---LAFILVKVKAGKYSEVASNLAKY-------PEIVE----VYETTGDYDMVVKIRTKN-SEEL 117 (151)
T ss_dssp CCCCCCCGGGGTCCE---EEEEEEEECTTCHHHHHHHHHTC-------TTEEE----EEECSSSSSEEEEEEESS-HHHH
T ss_pred EEEEEECHHHCCccE---EEEEEEEECcccHHHHHHHHhcC-------CCeeE----eeEecCCCCEEEEEEECC-HHHH
Confidence 344456777765443 12344566788889998888765 22221 134555679999999865 6667
Q ss_pred HHHHHHhcCCCcEEeeec
Q 023993 236 VSAGTEIGKLEGVVEHGL 253 (274)
Q Consensus 236 ~~l~~~l~~ipGVVe~Gl 253 (274)
+++-+.|..+|||..+--
T Consensus 118 ~~~~~~l~~~~gV~~~~t 135 (151)
T 2cyy_A 118 NNFLDLIGSIPGVEGTHT 135 (151)
T ss_dssp HHHHHHHHTSTTEEEEEE
T ss_pred HHHHHHHhCCCCEeEEEE
Confidence 766678889999976543
No 65
>2cg4_A Regulatory protein ASNC; DNA binding, FFRP, LRP family, transcription, DNA- binding, transcription regulation; 2.4A {Escherichia coli} SCOP: a.4.5.32 d.58.4.2
Probab=73.80 E-value=4.6 Score=32.02 Aligned_cols=84 Identities=12% Similarity=0.157 Sum_probs=53.6
Q ss_pred cEEEEEcCCcccccCCCCcccccEEEecc-cHHHHHHHHHHhHhhcCCeeEEeecCCCCceEeCCCCEEEEeeCCCCCCC
Q 023993 156 SFVVVADESKLVSGLGGSKLAMPVEVVQF-CWKFNLVRLQDLFRELGCEAKLREGENGKPYITDNFNYIIDLYFETPIKD 234 (274)
Q Consensus 156 ~~IvLaD~sK~~~~Lg~~~~plPvEV~p~-a~~~v~~~l~~l~~~~g~~~~lR~~~~~gp~vTdnGN~IlD~~f~~~i~d 234 (274)
++....|..|++..+ ..-+-+.+.|. .+..+.+.|.++ +.++. -..+|-+-|+++-+.+.+ ..+
T Consensus 54 ~~~~~~~~~~~g~~~---~a~v~v~~~~~~~~~~~~~~l~~~-------peV~~----~~~vtG~~d~~~~v~~~d-~~~ 118 (152)
T 2cg4_A 54 GARIDVSPKQLGYDV---GCFIGIILKSAKDYPSALAKLESL-------DEVTE----AYYTTGHYSIFIKVMCRS-IDA 118 (152)
T ss_dssp EEEEEECTTTTTCCE---EEEEEEEESSGGGHHHHHHHHHTC-------TTEEE----EEEESSSCSEEEEEEESC-HHH
T ss_pred eEEEecCHHHcCCeE---EEEEEEEECCCCCHHHHHHHHhCC-------cCeEE----EEEEecccCEEEEEEECC-HHH
Confidence 455677888876543 12344555554 567788888764 23332 145666779999999865 555
Q ss_pred hHHHH-HHhcCCCcEEeeecc
Q 023993 235 GVSAG-TEIGKLEGVVEHGLF 254 (274)
Q Consensus 235 ~~~l~-~~l~~ipGVVe~GlF 254 (274)
.+++- +.|..+|||..+--+
T Consensus 119 l~~~l~~~l~~~~gV~~~~t~ 139 (152)
T 2cg4_A 119 LQHVLINKIQTIDEIQSTETL 139 (152)
T ss_dssp HHHHHHHTTTTSTTEEEEEEE
T ss_pred HHHHHHHHhhcCCCeeEEEEE
Confidence 65544 567789999776533
No 66
>2zbc_A 83AA long hypothetical transcriptional regulator; SARD; 1.90A {Sulfolobus tokodaii}
Probab=73.47 E-value=2.4 Score=29.97 Aligned_cols=64 Identities=11% Similarity=0.056 Sum_probs=43.1
Q ss_pred ccEEEecccHHHHHHHHHHhHhhcCCeeEEeecCCCCceEeCCCCEEEEeeCCCCCCChHHHH-HHhcCCCcEEeee
Q 023993 177 MPVEVVQFCWKFNLVRLQDLFRELGCEAKLREGENGKPYITDNFNYIIDLYFETPIKDGVSAG-TEIGKLEGVVEHG 252 (274)
Q Consensus 177 lPvEV~p~a~~~v~~~l~~l~~~~g~~~~lR~~~~~gp~vTdnGN~IlD~~f~~~i~d~~~l~-~~l~~ipGVVe~G 252 (274)
+=|.+.|.....+.+.|.++ |+++.. ..+|-..++++-+.+.+ ..+.+++- +.|..+|||..+-
T Consensus 6 v~v~~~~~~~~~~~~~l~~~-------peV~~~----~~vtG~~d~l~~v~~~d-~~~l~~~~~~~l~~~~gV~~~~ 70 (83)
T 2zbc_A 6 VLINTDAGGEDEVFERLKSM-------SEVTEV----HVVYGVYDIVVKVEADS-MDKLKDFVTNTIRKLPKVRSTL 70 (83)
T ss_dssp EEEEESTTCHHHHHHHHTTC-------TTEEEE----EECSSSCSEEEEEECSS-HHHHHHHHHHTGGGSTTEEEEE
T ss_pred EEEEEcCCCHHHHHHHHhCC-------CCeEEE----EEEeccCCEEEEEEECC-HHHHHHHHHHHhcCCCCEeEEE
Confidence 34566777777777777654 334432 46677779999999865 55555554 3677899997653
No 67
>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}
Probab=71.04 E-value=26 Score=26.99 Aligned_cols=49 Identities=16% Similarity=0.177 Sum_probs=40.8
Q ss_pred CCEEEECcChHHHHHHHHHhchhhcCCCCCeEEECCcHHHHHHHHhCCCcEEEc
Q 023993 61 GMALGLGTGSTAAFVVDRIGQLLKTGELRDIVGIPTSKRTEEQAKSLNIPLTTL 114 (274)
Q Consensus 61 g~vIgLGsGSTv~~l~~~L~~~~~~~~l~~itvVT~S~~ta~~l~~~gi~vi~l 114 (274)
+.++-+|.|..-..+++.|.+. | .+++++..+......+.+.|++++.-
T Consensus 8 ~~viIiG~G~~G~~la~~L~~~---g--~~v~vid~~~~~~~~~~~~g~~~i~g 56 (140)
T 3fwz_A 8 NHALLVGYGRVGSLLGEKLLAS---D--IPLVVIETSRTRVDELRERGVRAVLG 56 (140)
T ss_dssp SCEEEECCSHHHHHHHHHHHHT---T--CCEEEEESCHHHHHHHHHTTCEEEES
T ss_pred CCEEEECcCHHHHHHHHHHHHC---C--CCEEEEECCHHHHHHHHHcCCCEEEC
Confidence 5699999999999999998753 2 37999999999888888889887653
No 68
>2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii}
Probab=70.46 E-value=3.2 Score=32.89 Aligned_cols=83 Identities=14% Similarity=0.165 Sum_probs=53.2
Q ss_pred cEEEEEcCCcccccCCCCcccccEEEecccHHHHHHHHHHhHhhcCCeeEEeecCCCCceEeCCCCEEEEeeC-CCCCCC
Q 023993 156 SFVVVADESKLVSGLGGSKLAMPVEVVQFCWKFNLVRLQDLFRELGCEAKLREGENGKPYITDNFNYIIDLYF-ETPIKD 234 (274)
Q Consensus 156 ~~IvLaD~sK~~~~Lg~~~~plPvEV~p~a~~~v~~~l~~l~~~~g~~~~lR~~~~~gp~vTdnGN~IlD~~f-~~~i~d 234 (274)
++....|..|++..+ ..-+=|.+.|.....+.+.|.++ +.++. -..+|-+-|+++-+.+ .+ ..+
T Consensus 55 ~~~~~~~~~~~g~~~---~a~v~v~~~~~~~~~~~~~l~~~-------peV~~----~~~vtG~~d~~~~v~~~~d-~~~ 119 (151)
T 2dbb_A 55 KFTIIPDIDKLGYMY---AIVLIKSKVPSDADKVISEISDI-------EYVKS----VEKGVGRYNIIVRLLLPKD-IKD 119 (151)
T ss_dssp EEEEEECTGGGTEEE---EEEEEEESSHHHHHHHHHHHTTC-------TTEEE----EEEEESSCSEEEEEEEESS-HHH
T ss_pred EEEecCChHHhCCCE---EEEEEEEeCCCCHHHHHHHHHcC-------CCeEE----EeEecCCCCEEEEEEEcCC-HHH
Confidence 455567888876443 12344566676666666666543 23332 2456777899999998 65 566
Q ss_pred hHHHH-HHhcCCCcEEeeec
Q 023993 235 GVSAG-TEIGKLEGVVEHGL 253 (274)
Q Consensus 235 ~~~l~-~~l~~ipGVVe~Gl 253 (274)
.+++- +.|..+|||..+--
T Consensus 120 l~~~~~~~l~~~~gV~~~~t 139 (151)
T 2dbb_A 120 AENLISEFLQRIKNAENVEV 139 (151)
T ss_dssp HHHHHHHHHHTCCSEEEEEE
T ss_pred HHHHHHHHhhcCCCeeEEEE
Confidence 66665 77889999976543
No 69
>2e1c_A Putative HTH-type transcriptional regulator PH151; DNA-binding, transcriptional regulatory protein, archaeal; HET: DNA; 2.10A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=69.91 E-value=1.7 Score=35.93 Aligned_cols=80 Identities=14% Similarity=0.102 Sum_probs=52.6
Q ss_pred EEEEcCCcccccCCCCcccccEEEecccHHHHHHHHHHhHhhcCCeeEEeecCCCCceEeCCCCEEEEeeCCCCCCChHH
Q 023993 158 VVVADESKLVSGLGGSKLAMPVEVVQFCWKFNLVRLQDLFRELGCEAKLREGENGKPYITDNFNYIIDLYFETPIKDGVS 237 (274)
Q Consensus 158 IvLaD~sK~~~~Lg~~~~plPvEV~p~a~~~v~~~l~~l~~~~g~~~~lR~~~~~gp~vTdnGN~IlD~~f~~~i~d~~~ 237 (274)
..+.|..|++..+ ..-+-+.+.|.....+.+.|.++ +.++. -..+|-..|+++-+.+.+ ..+.++
T Consensus 75 ~a~vd~~~~G~~~---~a~v~v~~~~~~~~~v~~~l~~~-------peV~~----~~~vtG~~d~l~~v~~~d-~~~l~~ 139 (171)
T 2e1c_A 75 TAIIDPEALGYSM---LAFILVKVKAGKYSEVASNLAKY-------PEIVE----VYETTGDYDMVVKIRTKN-SEELNN 139 (171)
T ss_dssp CCCCCGGGGTCCE---EEEEEEEECTTCHHHHHHHHHTS-------TTEEE----EEECSSSSSEEEEEEESS-HHHHHH
T ss_pred eEEECHHHcCCCE---EEEEEEEECcchHHHHHHHHhcC-------cCeEE----EEEeeCCCCEEEEEEECC-HHHHHH
Confidence 3445666665433 12244666788899999988765 22221 134555679999999865 666666
Q ss_pred HHHHhcCCCcEEeee
Q 023993 238 AGTEIGKLEGVVEHG 252 (274)
Q Consensus 238 l~~~l~~ipGVVe~G 252 (274)
+-+.|..+|||..+-
T Consensus 140 ~l~~l~~~~gV~~~~ 154 (171)
T 2e1c_A 140 FLDLIGSIPGVEGTH 154 (171)
T ss_dssp HHHHHHHSTTEEEEE
T ss_pred HHHHHhcCCCcceEE
Confidence 667888999997654
No 70
>2p5v_A Transcriptional regulator, LRP/ASNC family; NMB0573, structu genomics; 1.99A {Neisseria meningitidis} PDB: 2p6s_A 2p6t_A
Probab=62.36 E-value=9.1 Score=30.63 Aligned_cols=82 Identities=10% Similarity=0.125 Sum_probs=50.8
Q ss_pred cEEEEEcCCcccccCCCCcccccEEEeccc--HHHHHHHHHHhHhhcCCeeEEeecCCCCceEeCCCCEEEEeeCCCCCC
Q 023993 156 SFVVVADESKLVSGLGGSKLAMPVEVVQFC--WKFNLVRLQDLFRELGCEAKLREGENGKPYITDNFNYIIDLYFETPIK 233 (274)
Q Consensus 156 ~~IvLaD~sK~~~~Lg~~~~plPvEV~p~a--~~~v~~~l~~l~~~~g~~~~lR~~~~~gp~vTdnGN~IlD~~f~~~i~ 233 (274)
++....|..|++..+ ..-+-|.+.|.. ...+.+.|.++ +.+.. -..+|-+.||++-+.+.+ ..
T Consensus 56 ~~~~~~d~~~~g~~~---~a~v~v~~~~~~~~~~~~~~~l~~~-------peV~~----~~~vtG~~d~~~~v~~~d-~~ 120 (162)
T 2p5v_A 56 QYAALLSPESVNLGL---QAFIRVSIRKAKDAREDFAASVRKW-------PEVLS----CFALTGETDYLLQAFFTD-MN 120 (162)
T ss_dssp EEEEEECTGGGTCCE---EEEEEEEECSSTTHHHHHHHHHTTC-------TTEEE----EEEESSSCSEEEEEEESS-HH
T ss_pred eecccCChHHhcccE---EEEEEEEEcCCchHHHHHHHHHhcC-------hhhhE----eeeecCCCCEEEEEEECC-HH
Confidence 344566877766433 122445666765 67777776553 22222 134666779999999865 55
Q ss_pred ChHHHH-HHhcCCCcEEeee
Q 023993 234 DGVSAG-TEIGKLEGVVEHG 252 (274)
Q Consensus 234 d~~~l~-~~l~~ipGVVe~G 252 (274)
+.+++- +.|..+|||..+-
T Consensus 121 ~l~~~l~~~l~~~~gV~~~~ 140 (162)
T 2p5v_A 121 AFSHFVLDTLLSHHGVQDAQ 140 (162)
T ss_dssp HHHHHHHHTTTTSTTEEEEE
T ss_pred HHHHHHHHHhhcCCCeeEEE
Confidence 666654 5678999997654
No 71
>2djw_A Probable transcriptional regulator, ASNC family; structural genomics, thermus thermophilus HB8, NPPSFA; 2.40A {Thermus thermophilus}
Probab=61.53 E-value=4.8 Score=29.30 Aligned_cols=64 Identities=13% Similarity=0.070 Sum_probs=43.1
Q ss_pred ccEEEecccHHHHHHHHHHhHhhcCCeeEEeecCCCCceEeCCCCEEEEeeCCCCCCChHHHH-HHhcCCCcEEeee
Q 023993 177 MPVEVVQFCWKFNLVRLQDLFRELGCEAKLREGENGKPYITDNFNYIIDLYFETPIKDGVSAG-TEIGKLEGVVEHG 252 (274)
Q Consensus 177 lPvEV~p~a~~~v~~~l~~l~~~~g~~~~lR~~~~~gp~vTdnGN~IlD~~f~~~i~d~~~l~-~~l~~ipGVVe~G 252 (274)
+=|.+.|.....+.+.|.++ |++.. -..+|-.-++++-+.+.+ ..+.+++- +.|..+|||..+-
T Consensus 6 v~v~~~~~~~~~~~~~l~~~-------peV~~----~~~vtG~~D~ll~v~~~d-~~~l~~~l~~~l~~~~gV~~~~ 70 (92)
T 2djw_A 6 VLIRPRGNRVQALGEAIAEL-------PQVAE----VYSVTGPYDLVALVRLKD-VEELDDVVTQGILSLEGVERTE 70 (92)
T ss_dssp EEEEECGGGHHHHHHHHTTS-------TTEEE----EEEESSSSSEEEEEEESS-GGGHHHHCCCCCTTSTTEEEEE
T ss_pred EEEEEcCCCHHHHHHHHhcC-------CCeEE----EEEeecCCCEEEEEEECC-HHHHHHHHHHhcccCCCEeEEE
Confidence 34566677777777777654 33332 257787889999999865 55655553 4567899996653
No 72
>2ia0_A Putative HTH-type transcriptional regulator PF086; ASNC, PSI, structural genomics, southeast collaboratory for structural genomics; 2.37A {Pyrococcus furiosus}
Probab=60.79 E-value=17 Score=29.65 Aligned_cols=80 Identities=10% Similarity=-0.040 Sum_probs=54.3
Q ss_pred cEEEEEcCCcccccCCCCcccccEEEecc--------cHHHHHHHHHHhHhhcCCeeEEeecCCCCceEeCCCCEEEEee
Q 023993 156 SFVVVADESKLVSGLGGSKLAMPVEVVQF--------CWKFNLVRLQDLFRELGCEAKLREGENGKPYITDNFNYIIDLY 227 (274)
Q Consensus 156 ~~IvLaD~sK~~~~Lg~~~~plPvEV~p~--------a~~~v~~~l~~l~~~~g~~~~lR~~~~~gp~vTdnGN~IlD~~ 227 (274)
++....|..|++.. ..-+-|.+.|. .+..+.+.|.++ +.++. -++|-..|+++-+.
T Consensus 63 ~~~~~~d~~~lG~~----~a~v~v~~~~~~~~~f~~~~~~~~~~~l~~~-------peV~~-----~~vtG~~dll~~v~ 126 (171)
T 2ia0_A 63 RYTIILGEQLKPKH----LALIVLEVGKPVIEDFLERYISYISSTLSAL-------PGVLF-----VAKSGEDKIIALVG 126 (171)
T ss_dssp EEEEEECTTTSCSE----EEEEEEEESCC--CHHHHHHHHHHHHHHHTS-------TTEEE-----EEEETTTEEEEEEE
T ss_pred eecccCCHHHhhcc----eEEEEEEECCccccccchhHHHHHHHHHHCC-------CCeEE-----EEEcCCCCEEEEEE
Confidence 34556788776532 12244566676 567777777654 23332 23777889999999
Q ss_pred CCCCCCChHHHH-HHhcCCCcEEeee
Q 023993 228 FETPIKDGVSAG-TEIGKLEGVVEHG 252 (274)
Q Consensus 228 f~~~i~d~~~l~-~~l~~ipGVVe~G 252 (274)
..+ ..+..++- +.|..+|||..+-
T Consensus 127 ~~d-~~~l~~~l~~~l~~~~gV~~~~ 151 (171)
T 2ia0_A 127 KNN-KDELVKFIEENITSIPNLKHIQ 151 (171)
T ss_dssp ESS-TTHHHHHHHHHTTTSTTEEEEE
T ss_pred ECC-HHHHHHHHHHHhhcCCCeeEEE
Confidence 876 77888877 7899999998876
No 73
>1i1g_A Transcriptional regulator LRPA; helix-turn-helix, LRP/ASNC family; 2.90A {Pyrococcus furiosus} SCOP: a.4.5.32 d.58.4.2
Probab=60.40 E-value=8.6 Score=29.73 Aligned_cols=64 Identities=16% Similarity=0.079 Sum_probs=42.7
Q ss_pred ccEEEecccHHHHHHHHHHhHhhcCCeeEEeecCCCCceEeCCCCEEEEeeCCCCCCChHHHH-HHhcCCCcEEeee
Q 023993 177 MPVEVVQFCWKFNLVRLQDLFRELGCEAKLREGENGKPYITDNFNYIIDLYFETPIKDGVSAG-TEIGKLEGVVEHG 252 (274)
Q Consensus 177 lPvEV~p~a~~~v~~~l~~l~~~~g~~~~lR~~~~~gp~vTdnGN~IlD~~f~~~i~d~~~l~-~~l~~ipGVVe~G 252 (274)
+-+.+.|.....+.+.|.++ +..+.. ..+|-+.|+++-+.+.+ ..+.+++- +.|..+|||..+-
T Consensus 68 v~~~~~~~~~~~~~~~l~~~-------~~v~~~----~~~~G~~d~~~~v~~~d-~~~l~~~~~~~l~~~~gV~~~~ 132 (141)
T 1i1g_A 68 TGVDTKPEKLFEVAEKLKEY-------DFVKEL----YLSSGDHMIMAVIWAKD-GEDLAEIISNKIGKIEGVTKVC 132 (141)
T ss_dssp EEEEECGGGHHHHHHHHHHS-------TTEEEE----CCCSSSSSEEEEEEESS-HHHHHHHHHHTTTTSTTEEEEE
T ss_pred EEEEECchhHHHHHHHHhcC-------CCeEEE----EEecCCCCEEEEEEECC-HHHHHHHHHHHhhcCCCEeEEE
Confidence 34556688888888888875 222321 23455678999898765 55555555 6678899997654
No 74
>1y89_A DEVB protein; structural genomics, protein structure initiative, PSI, MIDW center for structural genomics, MCSG; HET: 2PE; 2.00A {Vibrio cholerae o1 biovar eltor str}
Probab=59.16 E-value=9.2 Score=33.00 Aligned_cols=38 Identities=21% Similarity=0.328 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHhcCCC--CCEEEECcChHHHHHHHHHhch
Q 023993 45 DLKKLAADKAVDYVKS--GMALGLGTGSTAAFVVDRIGQL 82 (274)
Q Consensus 45 ~~K~~iA~~A~~~I~d--g~vIgLGsGSTv~~l~~~L~~~ 82 (274)
+.=+.+|+.-++.+++ ..+|+|.+|||...+.+.|.+.
T Consensus 12 ~l~~~aA~~i~~~i~~~~~~~l~lsgGstp~~~~~~L~~~ 51 (238)
T 1y89_A 12 AVVKSLADDMLAYSQQGQPVHISLSGGSTPKMLFKLLASQ 51 (238)
T ss_dssp HHHHHHHHHHHHHHTTSSCEEEEECCSHHHHHHHHHHTST
T ss_pred HHHHHHHHHHHHHHHhCCCEEEEECCCccHHHHHHHHHhh
Confidence 3334445544455555 6799999999999999999753
No 75
>3j20_B 30S ribosomal protein S2P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=58.07 E-value=74 Score=27.24 Aligned_cols=86 Identities=20% Similarity=0.260 Sum_probs=55.5
Q ss_pred hHHHHHHHHHHHHhcCCCCCEEEECcChHHHHHHHHHhchhh---------cC----------CCCCeEEECCcH---HH
Q 023993 43 QDDLKKLAADKAVDYVKSGMALGLGTGSTAAFVVDRIGQLLK---------TG----------ELRDIVGIPTSK---RT 100 (274)
Q Consensus 43 ~~~~K~~iA~~A~~~I~dg~vIgLGsGSTv~~l~~~L~~~~~---------~~----------~l~~itvVT~S~---~t 100 (274)
..-+|-..|..++..+.+|+++++||-.+....++..+.+.. .| .++++.+|++-. +.
T Consensus 47 kT~~~L~~A~~~i~~~~~~~ilfV~tk~~~~~~V~k~A~~~g~~~v~~rw~gG~lTN~~~~~~~~Pdllvv~Dp~~d~~a 126 (202)
T 3j20_B 47 KTDERLKVAGKFLAKFEPQSILAVSVRLYGQKPVKKFGEVTGARAIPGRFLPGTMTNPAVKNFFEPDVLIVTDPRADHQA 126 (202)
T ss_dssp HHHHHHHHHHHHHHHSCSSCEEEECCCTTTHHHHHHHHHHHSCCCCCSSCCSSSSSCSSSSSCCCCSEEEESCTTTSHHH
T ss_pred HHHHHHHHHHHHHHhhCCCeEEEEecChHHHHHHHHHHHHHCCceeCceecCCCcccHhHHhccCCCeEEEeCCccchHH
Confidence 334455566666666789999999999877766665554311 11 135677887643 44
Q ss_pred HHHHHhCCCcEEEcCC----CCcccEEEEccC
Q 023993 101 EEQAKSLNIPLTTLDD----HPSLDLAIDGAD 128 (274)
Q Consensus 101 a~~l~~~gi~vi~l~~----~~~iD~afdGaD 128 (274)
..++...|||++.+-. ...+|++|=+-|
T Consensus 127 i~EA~~l~IP~Ial~DTn~~p~~Vd~~IP~Nd 158 (202)
T 3j20_B 127 MREAVEIGIPIVALVDTENLLSYVDLAIPTNN 158 (202)
T ss_dssp HHHHHHHTCCEEEEECTTCCCTTCCEEEECCC
T ss_pred HHHHHHcCCCEEEEEcCCCCccccCEEEeCCC
Confidence 4578888999886521 235788887654
No 76
>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}
Probab=56.00 E-value=73 Score=25.23 Aligned_cols=50 Identities=20% Similarity=0.233 Sum_probs=39.3
Q ss_pred CCCEEEECcChHHHHHHHHHhchhhcCCCCCeEEECCcHHHHHHHHhCCCcEEE
Q 023993 60 SGMALGLGTGSTAAFVVDRIGQLLKTGELRDIVGIPTSKRTEEQAKSLNIPLTT 113 (274)
Q Consensus 60 dg~vIgLGsGSTv~~l~~~L~~~~~~~~l~~itvVT~S~~ta~~l~~~gi~vi~ 113 (274)
...++.+|.|..-..+++.|.+. .| .+++++..+......+.+.|+.++.
T Consensus 39 ~~~v~IiG~G~~G~~~a~~L~~~--~g--~~V~vid~~~~~~~~~~~~g~~~~~ 88 (183)
T 3c85_A 39 HAQVLILGMGRIGTGAYDELRAR--YG--KISLGIEIREEAAQQHRSEGRNVIS 88 (183)
T ss_dssp TCSEEEECCSHHHHHHHHHHHHH--HC--SCEEEEESCHHHHHHHHHTTCCEEE
T ss_pred CCcEEEECCCHHHHHHHHHHHhc--cC--CeEEEEECCHHHHHHHHHCCCCEEE
Confidence 45689999999999999988642 02 3699999998887778788887664
No 77
>3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus}
Probab=55.92 E-value=60 Score=26.52 Aligned_cols=85 Identities=18% Similarity=0.194 Sum_probs=32.7
Q ss_pred ccccCCcccccCCCCCCCc-cccccccccccCCChHHHHHHHHHHHHhcCCCCC-EEEECcCh--HHHHHHHHHhchhhc
Q 023993 10 LHHSTSAHFLPRAPKSLRP-RAISIKAQAVPALTQDDLKKLAADKAVDYVKSGM-ALGLGTGS--TAAFVVDRIGQLLKT 85 (274)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~K~~iA~~A~~~I~dg~-vIgLGsGS--Tv~~l~~~L~~~~~~ 85 (274)
-||-|+...+||+-..... .-....++....+...+.... ....+. +++++ ++=||+|+ .+.++++.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~g~~d~~f~~~~~~~~~~~~~~-~l~~l~-~~~~~~vLDlGcG~G~~~~~la~~------- 76 (204)
T 3njr_A 6 HHHHHSSGLVPRGSHMSQVPGRPESAFAHDGQITKSPMRAL-TLAALA-PRRGELLWDIGGGSGSVSVEWCLA------- 76 (204)
T ss_dssp ---------------CCSSSCCCGGGSCCSSCCCCHHHHHH-HHHHHC-CCTTCEEEEETCTTCHHHHHHHHT-------
T ss_pred cccccccCcccCCCCCCCCCCCCHHHhhcCCCCCcHHHHHH-HHHhcC-CCCCCEEEEecCCCCHHHHHHHHc-------
Confidence 3666666666665333331 111222332334444444333 222333 34555 66666654 44444442
Q ss_pred CCCCCeEEECCcHHHHHHHH
Q 023993 86 GELRDIVGIPTSKRTEEQAK 105 (274)
Q Consensus 86 ~~l~~itvVT~S~~ta~~l~ 105 (274)
+ ..++.|-.|......++
T Consensus 77 ~--~~v~~vD~s~~~~~~a~ 94 (204)
T 3njr_A 77 G--GRAITIEPRADRIENIQ 94 (204)
T ss_dssp T--CEEEEEESCHHHHHHHH
T ss_pred C--CEEEEEeCCHHHHHHHH
Confidence 1 35889988887766553
No 78
>3ix7_A Uncharacterized protein TTHA0540; unknown function, thermus thermophilus HB8, structural genom 2, protein structure initiative; HET: MSE; 2.15A {Thermus thermophilus}
Probab=50.80 E-value=31 Score=27.67 Aligned_cols=66 Identities=6% Similarity=0.069 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHhcCC----CCCEEEE---CcChHHHHHHHHHhchhhcCCCCCeEEECCcHHHHHHHHhCCCcEEEcCC
Q 023993 45 DLKKLAADKAVDYVK----SGMALGL---GTGSTAAFVVDRIGQLLKTGELRDIVGIPTSKRTEEQAKSLNIPLTTLDD 116 (274)
Q Consensus 45 ~~K~~iA~~A~~~I~----dg~vIgL---GsGSTv~~l~~~L~~~~~~~~l~~itvVT~S~~ta~~l~~~gi~vi~l~~ 116 (274)
+.|+..++.+++.++ ...+-.. ..++.+=..+..++.. .+.++|||+......+...|++++.+..
T Consensus 52 ~~~r~rGr~gL~iL~~L~~~~~vei~~~~~~~~~vD~~ll~lA~~------~~~~lvTnD~~L~kvA~~~GI~Vl~l~~ 124 (134)
T 3ix7_A 52 PLRRAKGRRGLETLERLREAAPLEVLETTPKGESVDEKLLFLARD------LEAALVTNDHALLQMARIYGVKALSIQA 124 (134)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSCEEEECCCCSCSSHHHHHHHHHHH------TTCEEEESCHHHHHHHHHTTCCEEEHHH
T ss_pred hhhHHHHHHHHHHHHHHHhcCCEEEeCCCCCcccHHHHHHHHHHH------hCCEEEeCCHHHHHHHHHCCCeEEehHH
Confidence 457777877776553 1223333 3344555555556543 3678999999999999999999988753
No 79
>1t57_A Conserved protein MTH1675; structural genomics, FMN; HET: FMN; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.49.1.2
Probab=49.57 E-value=16 Score=31.65 Aligned_cols=93 Identities=14% Similarity=0.198 Sum_probs=52.2
Q ss_pred cccCCcccccCCCCCCCccccccccccccCCChHHHHHHHHHHHHhcCCCCCEEEECcChHHHHHHHHHhchhhcCCCCC
Q 023993 11 HHSTSAHFLPRAPKSLRPRAISIKAQAVPALTQDDLKKLAADKAVDYVKSGMALGLGTGSTAAFVVDRIGQLLKTGELRD 90 (274)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~K~~iA~~A~~~I~dg~vIgLGsGSTv~~l~~~L~~~~~~~~l~~ 90 (274)
||-.+.-.+||-.-.-+-. .-|...-+.|.++.=+.+.++|.++==+.=+|.=-+|.|...+++.+ ++ +
T Consensus 7 ~~~~~~~~~~~~~~~~k~i---~YF~~~G~eNT~~tl~la~era~e~~Ik~iVVASssG~TA~k~~e~~-----~~---~ 75 (206)
T 1t57_A 7 HHHHSSGLVPRGSHMEKKI---CYFEEPGKENTERVLELVGERADQLGIRNFVVASVSGETALRLSEMV-----EG---N 75 (206)
T ss_dssp --------------CEEEE---EEESSCSGGGHHHHHHHHHHHHHHHTCCEEEEECSSSHHHHHHHTTC-----CS---E
T ss_pred cccccCCcccCCccceeeE---EEecCCCcccHHHHHHHHHHHHHHcCCCEEEEEeCCCHHHHHHHHHc-----cC---C
Confidence 5555667888865544332 33443344555555555666676763335578888999998887744 12 6
Q ss_pred eEEECC------------cHHHHHHHHhCCCcEEEc
Q 023993 91 IVGIPT------------SKRTEEQAKSLNIPLTTL 114 (274)
Q Consensus 91 itvVT~------------S~~ta~~l~~~gi~vi~l 114 (274)
+.+||. +.++...|++.|++|+.-
T Consensus 76 lVvVTh~~GF~~pg~~e~~~e~~~~L~~~G~~V~t~ 111 (206)
T 1t57_A 76 IVSVTHHAGFREKGQLELEDEARDALLERGVNVYAG 111 (206)
T ss_dssp EEEECCCTTSSSTTCCSSCHHHHHHHHHHTCEEECC
T ss_pred EEEEeCcCCCCCCCCCcCCHHHHHHHHhCCCEEEEe
Confidence 889984 668888999999998753
No 80
>2pn6_A ST1022, 150AA long hypothetical transcriptional regulator; LRP/ASNC family Gln binding, structural genomics, NPPSFA; HET: GLN; 1.44A {Sulfolobus tokodaii} PDB: 2efn_A* 2e7x_A* 2e7w_A* 2yx4_A* 2efq_A* 2pmh_A* 2yx7_A* 2efp_A* 2efo_A*
Probab=49.48 E-value=7.5 Score=30.55 Aligned_cols=58 Identities=7% Similarity=0.032 Sum_probs=38.8
Q ss_pred cccHHHHHHHHHHhHhhcCCeeEEeecCCCCceEeCCCCEEEEeeCCCCCCChHHHH-HHhcCCCcEEeee
Q 023993 183 QFCWKFNLVRLQDLFRELGCEAKLREGENGKPYITDNFNYIIDLYFETPIKDGVSAG-TEIGKLEGVVEHG 252 (274)
Q Consensus 183 p~a~~~v~~~l~~l~~~~g~~~~lR~~~~~gp~vTdnGN~IlD~~f~~~i~d~~~l~-~~l~~ipGVVe~G 252 (274)
|.....+.+.+.++ +.+.. -..+|-..|+++-+...+ ..+..++- +.|..+|||..+-
T Consensus 75 ~~~~~~~~~~l~~~-------p~V~~----~~~~tG~~d~~~~v~~~d-~~~l~~~l~~~l~~~~gV~~~~ 133 (150)
T 2pn6_A 75 KNYHVELGNKLAQI-------PGVWG----VYFVLGDNDFIVMARYKT-REEFMEKFLERVMSIPEVERTS 133 (150)
T ss_dssp TTHHHHHHHHHHTS-------TTEEE----EEECSSSCSEEEEEEESS-HHHHHHHTHHHHTTCTTEEEEE
T ss_pred hhHHHHHHHHHhcC-------chhhh----hhhhcCcCCEEEEEEECC-HHHHHHHHHHHhccCCCeeEEE
Confidence 56677887877764 22221 134556779999999865 55666655 7788999996654
No 81
>1ucr_A Protein DSVD; dissimilatory sulfite reductase D, DNA binding motif, sulfate-reducing bacteria, winged-helix motif, unknown function; 1.20A {Desulfovibrio vulgaris} SCOP: a.4.5.45 PDB: 1wq2_A
Probab=49.13 E-value=1 Score=33.33 Aligned_cols=29 Identities=21% Similarity=0.217 Sum_probs=22.0
Q ss_pred HHHHHHHHH-hcCCCCCEEEECcChHHHHH
Q 023993 47 KKLAADKAV-DYVKSGMALGLGTGSTAAFV 75 (274)
Q Consensus 47 K~~iA~~A~-~~I~dg~vIgLGsGSTv~~l 75 (274)
|.+-+++++ ++|.+|-..+.-||||+++-
T Consensus 35 k~r~vKK~~~~LV~Eg~leywSSGSTTmyg 64 (78)
T 1ucr_A 35 KQREVKKILTALVNDEVLEYWSSGSTTMYG 64 (78)
T ss_dssp CHHHHHHHHHHHHHTTSEEEEEETTEEEEE
T ss_pred CHHHHHHHHHHHHhcCceEEEecCCeEEEe
Confidence 333444444 89999999999999998654
No 82
>3u5c_A 40S ribosomal protein S0-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_A 3o30_A 3o2z_A 3u5g_A 3jyv_B* 1s1h_B
Probab=48.33 E-value=1.2e+02 Score=26.83 Aligned_cols=86 Identities=16% Similarity=0.215 Sum_probs=54.8
Q ss_pred hHHHHHHHHHHHHhcC-CCCCEEEECcChHHHHHHHHHhchhh---------cC----------CCCCeEEECCcH---H
Q 023993 43 QDDLKKLAADKAVDYV-KSGMALGLGTGSTAAFVVDRIGQLLK---------TG----------ELRDIVGIPTSK---R 99 (274)
Q Consensus 43 ~~~~K~~iA~~A~~~I-~dg~vIgLGsGSTv~~l~~~L~~~~~---------~~----------~l~~itvVT~S~---~ 99 (274)
..-.|...|..++..+ +.|+++++||-.+....+...+.+.. .| .++++.+|++-. +
T Consensus 52 kT~~~L~~A~~~i~~i~~~~~vlfVgTk~~~q~~V~k~A~~~g~~~v~~rwlgGtLTN~~t~~f~~PdllvV~Dp~~d~~ 131 (252)
T 3u5c_A 52 KTWEKLVLAARIIAAIPNPEDVVAISSRTFGQRAVLKFAAHTGATPIAGRFTPGSFTNYITRSFKEPRLVIVTDPRSDAQ 131 (252)
T ss_dssp HHHHHHHHHHHHHTTSSSGGGEEEEECSHHHHHHHHHHHHHSSCEEEESCCCTTSSSCTTSTTCCCCSEEEESCTTTTHH
T ss_pred HHHHHHHHHHHHHHHHhcCCEEEEEeCCcHHHHHHHHHHHHhCCceecCcccCCcccChhhhhccCCceEEEeCCccchH
Confidence 3345655666666556 56789999999888777766554311 11 235677887643 4
Q ss_pred HHHHHHhCCCcEEEcCC----CCcccEEEEccC
Q 023993 100 TEEQAKSLNIPLTTLDD----HPSLDLAIDGAD 128 (274)
Q Consensus 100 ta~~l~~~gi~vi~l~~----~~~iD~afdGaD 128 (274)
...++...|||++.+-. ...+|++|=+-|
T Consensus 132 ai~EA~~l~IP~Ial~DTn~~p~~VD~~IP~Nd 164 (252)
T 3u5c_A 132 AIKEASYVNIPVIALTDLDSPSEFVDVAIPCNN 164 (252)
T ss_dssp HHHHHHTTTCCEEEEECTTCCCTTCSSEEECCT
T ss_pred HHHHHHHcCCCEEEEEcCCCCcccCCEEEeCCC
Confidence 44578889999886521 135777776643
No 83
>2nzc_A Hypothetical protein; sturctural genomics, TM1266, structural genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; 1.95A {Thermotoga maritima} SCOP: d.58.18.14
Probab=47.05 E-value=9.4 Score=28.67 Aligned_cols=62 Identities=19% Similarity=0.240 Sum_probs=44.1
Q ss_pred cHHHHHHHHHHhHhhcCCeeEEeecCCCCceEeCCCCEEEEeeCCCCCCChHHHHHHhcCCCcEEe
Q 023993 185 CWKFNLVRLQDLFRELGCEAKLREGENGKPYITDNFNYIIDLYFETPIKDGVSAGTEIGKLEGVVE 250 (274)
Q Consensus 185 a~~~v~~~l~~l~~~~g~~~~lR~~~~~gp~vTdnGN~IlD~~f~~~i~d~~~l~~~l~~ipGVVe 250 (274)
....+..++++++.++|.-..-||. =||-..+=+.| -+..+.+-+...+|..+|.+||||--
T Consensus 16 ~r~~~a~kvn~iL~~yg~~I~gRmG---iP~~~~~~~iI-sl~v~~~~d~I~aL~gkLg~i~GV~v 77 (86)
T 2nzc_A 16 DREKAYRQVNELLHNFSEDILLRVG---YPVREENMAII-FLVLKTDNDTIGALSGKLGQISGVRV 77 (86)
T ss_dssp SCHHHHHHHHHHHHHTGGGEEEEEE---EEEGGGTEEEE-EEEEEECHHHHHHHHHHHHTSTTEEE
T ss_pred CchhhHHHHHHHHHhccCEEEEEcC---CCcCcCCceEE-EEEEECCHHHHHHHHHHhCCCCCEEE
Confidence 3445666788888888988888984 37776444444 35554445567899999999999954
No 84
>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}
Probab=44.97 E-value=96 Score=23.26 Aligned_cols=49 Identities=12% Similarity=0.154 Sum_probs=38.8
Q ss_pred CCEEEECcChHHHHHHHHHhchhhcCCCCCeEEECCcHHHHHHHHhCCCcEEEc
Q 023993 61 GMALGLGTGSTAAFVVDRIGQLLKTGELRDIVGIPTSKRTEEQAKSLNIPLTTL 114 (274)
Q Consensus 61 g~vIgLGsGSTv~~l~~~L~~~~~~~~l~~itvVT~S~~ta~~l~~~gi~vi~l 114 (274)
..++-+|.|..-..+++.|.+. | .+++++..+......+.+.+.+++..
T Consensus 7 ~~v~I~G~G~iG~~la~~L~~~---g--~~V~~id~~~~~~~~~~~~~~~~~~g 55 (141)
T 3llv_A 7 YEYIVIGSEAAGVGLVRELTAA---G--KKVLAVDKSKEKIELLEDEGFDAVIA 55 (141)
T ss_dssp CSEEEECCSHHHHHHHHHHHHT---T--CCEEEEESCHHHHHHHHHTTCEEEEC
T ss_pred CEEEEECCCHHHHHHHHHHHHC---C--CeEEEEECCHHHHHHHHHCCCcEEEC
Confidence 3588999999989999988753 2 37999999988888787778776653
No 85
>1rwu_A Hypothetical UPF0250 protein YBED; mixed alpha-beta fold, structural genomics, protein structure initiative, PSI; NMR {Escherichia coli} SCOP: d.58.54.1
Probab=44.66 E-value=59 Score=25.11 Aligned_cols=81 Identities=14% Similarity=0.109 Sum_probs=43.9
Q ss_pred cCCcccccCCCCcccccEEEecccHHHHHHHHHHhHhhc---CCeeEEeecCCCCceEeCCCCEEEEeeCCCCCCChHHH
Q 023993 162 DESKLVSGLGGSKLAMPVEVVQFCWKFNLVRLQDLFREL---GCEAKLREGENGKPYITDNFNYIIDLYFETPIKDGVSA 238 (274)
Q Consensus 162 D~sK~~~~Lg~~~~plPvEV~p~a~~~v~~~l~~l~~~~---g~~~~lR~~~~~gp~vTdnGN~IlD~~f~~~i~d~~~l 238 (274)
+..|+...+ ...+.-|+-|+-.+-....+.+.+++... ++.+..|.+++ |-|+| +=+.+.... .+...++
T Consensus 23 ~~~~l~~li-eFPc~y~~KvIG~a~~~~~~~V~~vv~~~~p~d~~~~~r~Ss~-GkY~S----vtv~v~v~S-~eQv~ai 95 (109)
T 1rwu_A 23 MKTKLNELL-EFPTPFTYKVMGQALPELVDQVVEVVQRHAPGDYTPTVKPSSK-GNYHS----VSITINATH-IEQVETL 95 (109)
T ss_dssp CCCSSSCSS-CCCCCEEEEEEEECCTTHHHHHHHHHHHHSSSCCCEEEEESSC-SSEEE----EEEEECCSS-HHHHHHH
T ss_pred ccccchhhc-cCCCCceEEEEEECcHHHHHHHHHHHHHhCCCCCCceecCCCC-CeEEE----EEEEEEECC-HHHHHHH
Confidence 467776666 22334455566444333334444444443 56666665443 33333 124444433 3455678
Q ss_pred HHHhcCCCcEE
Q 023993 239 GTEIGKLEGVV 249 (274)
Q Consensus 239 ~~~l~~ipGVV 249 (274)
-++|..+|||.
T Consensus 96 Y~~L~~~~~Vk 106 (109)
T 1rwu_A 96 YEELGKIDIVR 106 (109)
T ss_dssp HHHHSCSSSCE
T ss_pred HHHHhcCCCEE
Confidence 88999999985
No 86
>1vi6_A 30S ribosomal protein S2P; structural genomics, ribosome; 1.95A {Archaeoglobus fulgidus} SCOP: c.23.15.1 PDB: 1vi5_A
Probab=44.40 E-value=1.5e+02 Score=25.39 Aligned_cols=86 Identities=19% Similarity=0.222 Sum_probs=56.5
Q ss_pred hHHHHHHHHHHHHhcCCCCCEEEECcChHHHHHHHHHhchhh---------cC----------CCCCeEEECCcH---HH
Q 023993 43 QDDLKKLAADKAVDYVKSGMALGLGTGSTAAFVVDRIGQLLK---------TG----------ELRDIVGIPTSK---RT 100 (274)
Q Consensus 43 ~~~~K~~iA~~A~~~I~dg~vIgLGsGSTv~~l~~~L~~~~~---------~~----------~l~~itvVT~S~---~t 100 (274)
+..+|-..|..++..+++|+++++||-.....+++..+.+.. .| ..+++.+|++-. +.
T Consensus 51 kT~~~L~~A~~~i~~i~~~~iLfVgTk~~~~~~V~~~A~~~g~~~v~~rwlgG~LTN~~~~~f~~PdlliV~Dp~~e~~a 130 (208)
T 1vi6_A 51 KLDERIRVAAKFLSRYEPSKILLVAARQYAHKPVQMFSKVVGSDYIVGRFIPGTLTNPMLSEYREPEVVFVNDPAIDKQA 130 (208)
T ss_dssp HHHHHHHHHHHHHTTSCGGGEEEEECSGGGHHHHHHHHHHHCCEEEESSCCTTTTTCTTSTTCCCCSEEEESCTTTTHHH
T ss_pred HHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhCCeeecCEECCCcccChhhHhhCCCCEEEEECCCcchhH
Confidence 445566667777765688999999998887766666554321 11 135677777632 34
Q ss_pred HHHHHhCCCcEEEcCC----CCcccEEEEccC
Q 023993 101 EEQAKSLNIPLTTLDD----HPSLDLAIDGAD 128 (274)
Q Consensus 101 a~~l~~~gi~vi~l~~----~~~iD~afdGaD 128 (274)
..+|...|||++.+-+ ...+|+.|=|-|
T Consensus 131 i~EA~~l~IPvIalvDTn~~p~~Vd~~IP~Nd 162 (208)
T 1vi6_A 131 VSEATAVGIPVVALCDSNNSSADVDLVIPTNN 162 (208)
T ss_dssp HHHHHHTTCCEEEEECTTCCCTTCSEEEESCC
T ss_pred HHHHHHhCCCEEEEeCCCCCccccCEEEeCCC
Confidence 5588899999987622 236788887654
No 87
>1tx2_A DHPS, dihydropteroate synthase; folate biosynthesis, pterine, MA transferase; HET: 680; 1.83A {Bacillus anthracis} SCOP: c.1.21.1 PDB: 1tww_A* 1twz_A* 1tx0_A* 1tws_A* 3h21_A* 3h22_A* 3h23_A* 3h24_A* 3h26_A* 3h2a_A* 3h2c_A* 3h2e_A* 3h2f_A* 3h2m_A* 3h2n_A* 3h2o_A* 3tya_A* 3tyb_A* 3tyc_A* 3tyd_A* ...
Probab=43.97 E-value=53 Score=29.67 Aligned_cols=62 Identities=15% Similarity=0.130 Sum_probs=40.6
Q ss_pred HHHHHHHHHhcCCCC-CEEEECcChH---------HHHH------HHHHhchhhcCCCCCeEEECCcHHHHHHHHhCCCc
Q 023993 47 KKLAADKAVDYVKSG-MALGLGTGST---------AAFV------VDRIGQLLKTGELRDIVGIPTSKRTEEQAKSLNIP 110 (274)
Q Consensus 47 K~~iA~~A~~~I~dg-~vIgLGsGST---------v~~l------~~~L~~~~~~~~l~~itvVT~S~~ta~~l~~~gi~ 110 (274)
...+.+.|.+++++| ++|=||+-|| -.++ ++.|.+.. . ..+.+=|....++..+-+.|..
T Consensus 62 ~~~a~~~a~~~v~~GAdiIDIGgeStrPga~~v~~~eE~~RvvpvI~~l~~~~---~-vpiSIDT~~~~V~~aAl~aGa~ 137 (297)
T 1tx2_A 62 VDAAVRHAKEMRDEGAHIIDIGGESTRPGFAKVSVEEEIKRVVPMIQAVSKEV---K-LPISIDTYKAEVAKQAIEAGAH 137 (297)
T ss_dssp HHHHHHHHHHHHHTTCSEEEEESCC----CCCCCHHHHHHHHHHHHHHHHHHS---C-SCEEEECSCHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHcCCCEEEECCCcCCCCCCCCCHHHHHHHHHHHHHHHHhcC---C-ceEEEeCCCHHHHHHHHHcCCC
Confidence 455666788999998 6999998666 3333 23333211 2 2588888888988877666666
Q ss_pred EE
Q 023993 111 LT 112 (274)
Q Consensus 111 vi 112 (274)
++
T Consensus 138 iI 139 (297)
T 1tx2_A 138 II 139 (297)
T ss_dssp EE
T ss_pred EE
Confidence 55
No 88
>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*
Probab=43.94 E-value=88 Score=29.14 Aligned_cols=63 Identities=13% Similarity=0.098 Sum_probs=48.0
Q ss_pred CCEEEECcChHHHHHHHHHhchhhcCCCCCeEEECCcHHHHHHHHhCCCcEEEcCC----------CCcccEEEEccC
Q 023993 61 GMALGLGTGSTAAFVVDRIGQLLKTGELRDIVGIPTSKRTEEQAKSLNIPLTTLDD----------HPSLDLAIDGAD 128 (274)
Q Consensus 61 g~vIgLGsGSTv~~l~~~L~~~~~~~~l~~itvVT~S~~ta~~l~~~gi~vi~l~~----------~~~iD~afdGaD 128 (274)
+.+|-+|.|..-..+++.|.+. | .++++|..+......+++.|++++.-+. ..+.|..+...+
T Consensus 5 ~~viIiG~Gr~G~~va~~L~~~---g--~~vvvId~d~~~v~~~~~~g~~vi~GDat~~~~L~~agi~~A~~viv~~~ 77 (413)
T 3l9w_A 5 MRVIIAGFGRFGQITGRLLLSS---G--VKMVVLDHDPDHIETLRKFGMKVFYGDATRMDLLESAGAAKAEVLINAID 77 (413)
T ss_dssp CSEEEECCSHHHHHHHHHHHHT---T--CCEEEEECCHHHHHHHHHTTCCCEESCTTCHHHHHHTTTTTCSEEEECCS
T ss_pred CeEEEECCCHHHHHHHHHHHHC---C--CCEEEEECCHHHHHHHHhCCCeEEEcCCCCHHHHHhcCCCccCEEEECCC
Confidence 4599999999999999988753 2 4799999999998888888988775331 235566666554
No 89
>2g39_A Acetyl-COA hydrolase; coenzyme A transferase, structural G PSI, protein structure initiative, midwest center for struc genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: c.124.1.2 c.124.1.2
Probab=43.93 E-value=22 Score=34.46 Aligned_cols=116 Identities=19% Similarity=0.216 Sum_probs=71.1
Q ss_pred CChHHHHHHHHHHHHhc----CCCC------CEEEECcChHHHHHHHHHhchhhcCCCCCeEEECCcH-HHHHHHHhCC-
Q 023993 41 LTQDDLKKLAADKAVDY----VKSG------MALGLGTGSTAAFVVDRIGQLLKTGELRDIVGIPTSK-RTEEQAKSLN- 108 (274)
Q Consensus 41 ~~~~~~K~~iA~~A~~~----I~dg------~vIgLGsGSTv~~l~~~L~~~~~~~~l~~itvVT~S~-~ta~~l~~~g- 108 (274)
+..++.+++||+.|+++ |++| +++=+|-|+....++..|.+. .++++.+-|--+ +....|.+.|
T Consensus 227 ~~~~~~~~~Ia~~~a~~i~~~~~~G~l~~~~~~lqlGiG~ip~aV~~~l~~~----~~~~l~~~se~~~d~~~~li~aG~ 302 (497)
T 2g39_A 227 LPPDGETQAIANHLIDFFKREVDAGRMSNSLGPLQAGIGSIANAVMCGLIES----PFENLTMYSEVLQDSTFDLIDAGK 302 (497)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHHTTSSCTTCSCEEECSSHHHHHHHHGGGSS----SCCSEEEECSEECHHHHHHHHTTC
T ss_pred CCCChHHHHHHHHHHHHHHhhhhcCCcccCCceEEeeEcHHHHHHHHHhhhc----ccccceEEeeccchhHHHHHHCCC
Confidence 44557788899999985 4567 999999999999999988753 234555544411 1111333444
Q ss_pred CcEE---EcC-----------CCC---------------------cc-cEEEEccCcccCCCCc----------ccCcch
Q 023993 109 IPLT---TLD-----------DHP---------------------SL-DLAIDGADEVDPELNL----------VKGRGG 142 (274)
Q Consensus 109 i~vi---~l~-----------~~~---------------------~i-D~afdGaD~Vd~~~~~----------ikg~gg 142 (274)
++.. .+. ... +. +++|.||=+||..+++ +.|-||
T Consensus 303 ~~~~~~~~f~~~~~g~~~~~~~~~~~~~~i~~~~~~~~N~p~~i~~~~~iain~a~evD~~G~vn~~~~~g~~~~~G~GG 382 (497)
T 2g39_A 303 LRFASGSSITLSPRRNADVFGNLERYKDKLVLRPQEISNHPEVVRRLGIIGINTALEFDIYGNVNSTHVGGTKMMNGIGG 382 (497)
T ss_dssp EEEEEESEECCCHHHHHHHHHSGGGTGGGEEECBHHHHTCHHHHHHHTCEEEEECSEEETTSCEESSEETTTEECSCCTT
T ss_pred CcceeeeeeccccccHHHHHHhHHhcCCceeeecccccCCHHHHhCCCcEEEehhheccCCCceeeeeccCCcEEeccCc
Confidence 3321 111 000 11 5999999999976654 222345
Q ss_pred hHHHHHHHHHhcCcEEEEEcCC
Q 023993 143 ALLREKMVEAASKSFVVVADES 164 (274)
Q Consensus 143 a~l~EKila~~S~~~IvLaD~s 164 (274)
+.= ++..|++.|+...++
T Consensus 383 ~~D----f~~gA~~sii~~~st 400 (497)
T 2g39_A 383 SGD----FARNAHLAIFVTKSI 400 (497)
T ss_dssp HHH----HHHHCSEEEEECCSE
T ss_pred chh----hhccCCEEEEEEccc
Confidence 442 345788888887775
No 90
>3p9z_A Uroporphyrinogen III cosynthase (HEMD); MCSG, PSI2, structural genomics, protein structure initiativ midwest center for structural genomics; HET: MSE; 2.10A {Helicobacter pylori}
Probab=43.55 E-value=41 Score=28.38 Aligned_cols=49 Identities=18% Similarity=0.083 Sum_probs=40.7
Q ss_pred CCCCEEEECcChHHHHHHHHHhchhhcCCCCCeEEECCcHHHHHHHHhCCCcEEE
Q 023993 59 KSGMALGLGTGSTAAFVVDRIGQLLKTGELRDIVGIPTSKRTEEQAKSLNIPLTT 113 (274)
Q Consensus 59 ~dg~vIgLGsGSTv~~l~~~L~~~~~~~~l~~itvVT~S~~ta~~l~~~gi~vi~ 113 (274)
.+-|.|-+-|++|+..|.+.+.. +.++++++-+..|+..+++.|+++..
T Consensus 160 ~~~d~v~ftS~s~v~~~~~~~~~------~~~~~~~aIG~~Ta~~l~~~G~~v~v 208 (229)
T 3p9z_A 160 KEKSILIFTAISHAKAFLHYFEF------LENYTAISIGNTTALYLQEQGIPSYI 208 (229)
T ss_dssp CTTCEEEECSHHHHHHHHHHSCC------CTTCEEEESSHHHHHHHHHTTCCEEE
T ss_pred CCCeEEEEECHHHHHHHHHHhCc------ccCCEEEEECHHHHHHHHHcCCCcee
Confidence 45589999999999999987742 24688999999999999999998653
No 91
>3zzm_A Bifunctional purine biosynthesis protein PURH; transferase, hydrolase; HET: JLN; 2.20A {Mycobacterium tuberculosis} PDB: 4a1o_A*
Probab=42.60 E-value=43 Score=32.86 Aligned_cols=78 Identities=18% Similarity=0.158 Sum_probs=45.6
Q ss_pred ccccCCChHHHHHHHHHHHHhcCC--------CCCEEEECcChHHHHHHHHHhchhhcCCCCCeEEECCcH----HHHHH
Q 023993 36 QAVPALTQDDLKKLAADKAVDYVK--------SGMALGLGTGSTAAFVVDRIGQLLKTGELRDIVGIPTSK----RTEEQ 103 (274)
Q Consensus 36 ~~~~~~~~~~~K~~iA~~A~~~I~--------dg~vIgLGsGSTv~~l~~~L~~~~~~~~l~~itvVT~S~----~ta~~ 103 (274)
|-+++...+-.-...|.+++++++ +|++||+|+|-+..-=+-+|+-.-+...+.+....+.-+ +....
T Consensus 402 T~~~pt~~e~~dL~fAw~v~K~vkSNAIv~akdg~tvGiGaGQ~sRV~s~r~A~~kAg~~~~G~vlaSDAFFPF~D~ve~ 481 (523)
T 3zzm_A 402 TGSPADPATLTDLVFAWRACRAVKSNAIVIAADGATVGVGMGQVNRVDAARLAVERGGERVRGAVAASDAFFPFPDGLET 481 (523)
T ss_dssp ESSCCCHHHHHHHHHHHHHGGGSCSSCEEEEETTEEEEEECSCSSHHHHHHHHHHHHGGGCTTCEEEESSCCSSHHHHHH
T ss_pred cCCCcCHHHHHHHHHHHHHHHhccCceEEEEECCeEEEECCCCcchHHHHHHHHHHhccccCCeEEEeccCcCCCccHHH
Confidence 334444333334568999999986 678999999976654444554211112234444433332 55566
Q ss_pred HHhCCCcEEE
Q 023993 104 AKSLNIPLTT 113 (274)
Q Consensus 104 l~~~gi~vi~ 113 (274)
+.+.|++-+.
T Consensus 482 aa~aGv~aIi 491 (523)
T 3zzm_A 482 LAAAGVTAVV 491 (523)
T ss_dssp HHHTTCCEEE
T ss_pred HHHcCCEEEE
Confidence 7788887554
No 92
>3iz6_A 40S ribosomal protein SA (S2P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=41.15 E-value=2.1e+02 Score=26.08 Aligned_cols=85 Identities=13% Similarity=0.097 Sum_probs=53.9
Q ss_pred HHHHHHHHHHHHhcC-CCCCEEEECcChHHHHHHHHHhchhh---------cC----------CCCCeEEECCcH---HH
Q 023993 44 DDLKKLAADKAVDYV-KSGMALGLGTGSTAAFVVDRIGQLLK---------TG----------ELRDIVGIPTSK---RT 100 (274)
Q Consensus 44 ~~~K~~iA~~A~~~I-~dg~vIgLGsGSTv~~l~~~L~~~~~---------~~----------~l~~itvVT~S~---~t 100 (274)
.-+|...|..++..+ +.++++++||-.+....++..+.+.. .| .+.++.+|++-. +.
T Consensus 58 T~e~L~~Aa~~I~~i~~~~~ILfVgTk~~aq~aV~k~A~~tG~~yV~~RWlgGtLTN~~t~~f~ePdllvV~Dp~~d~qA 137 (305)
T 3iz6_A 58 TWEKLQLAARVIVAIENPQDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQLQTSFSEPRLLILTDPRTDHQP 137 (305)
T ss_dssp HHHHHHHHHHHHHHTTSSCCEEEECCSHHHHHHHHHHHHHHTCEEECSCCCTTTTTTTTTSCSSCCSEEEESCTTTTHHH
T ss_pred HHHHHHHHHHHHHHHhCCCeEEEEeCcHHHHHHHHHHHHHhCCccccCcccCCcccCcccccccCCceeEEeCcccchHH
Confidence 344555566666556 46799999999887776665544311 11 234677887643 34
Q ss_pred HHHHHhCCCcEEEcCC----CCcccEEEEccC
Q 023993 101 EEQAKSLNIPLTTLDD----HPSLDLAIDGAD 128 (274)
Q Consensus 101 a~~l~~~gi~vi~l~~----~~~iD~afdGaD 128 (274)
..++...||+++.+-. ...+|+.|=+-|
T Consensus 138 I~EA~~lnIPtIALvDTnsdp~~VDy~IP~ND 169 (305)
T 3iz6_A 138 IKESALGNIPTIAFCDTDSPMRYVDIGIPANN 169 (305)
T ss_dssp HHHHHHHTCCEEEEECTTSCGGGCSEEEESCC
T ss_pred HHHHHHcCCCEEEEEcCCCCccccceEEeCCC
Confidence 4577888999886522 135788887643
No 93
>2w25_A Probable transcriptional regulatory protein; transcription regulation, mutant, RV3291C, Glu104Ala, DNA-binding; 2.15A {Mycobacterium tuberculosis} PDB: 2vbw_A* 2vbx_A* 2vby_A* 2vbz_A* 2vc0_A 2vc1_A 2w24_A 2ivm_A 2w29_A 2qz8_A
Probab=40.59 E-value=6.2 Score=31.16 Aligned_cols=81 Identities=7% Similarity=0.016 Sum_probs=49.4
Q ss_pred cEEEEEcCCcccccCCCCcccccEE-EecccHHHHHHHHHHhHhhcCCeeEEeecCCCCceEeCCCCEEEEeeCCCCCCC
Q 023993 156 SFVVVADESKLVSGLGGSKLAMPVE-VVQFCWKFNLVRLQDLFRELGCEAKLREGENGKPYITDNFNYIIDLYFETPIKD 234 (274)
Q Consensus 156 ~~IvLaD~sK~~~~Lg~~~~plPvE-V~p~a~~~v~~~l~~l~~~~g~~~~lR~~~~~gp~vTdnGN~IlD~~f~~~i~d 234 (274)
++....|..|++..+ ..-+-+. +.|.....+.+.|.++ +.++. -..+|-..|+++-+.+.+ ..+
T Consensus 53 ~~~~~~d~~~~g~~~---~a~v~~~~~~~~~~~~~~~~l~~~-------p~V~~----~~~~~G~~d~~~~v~~~~-~~~ 117 (150)
T 2w25_A 53 GYSARINPEAVGHLL---SAFVAITPLDPSQPDDAPARLEHI-------EEVES----CYSVAGEASYVLLVRVAS-ARA 117 (150)
T ss_dssp EEEEEECTGGGTCCE---EEEEEEEESCTTSCCCHHHHHTTC-------TTEEE----EEEESSSCSEEEEEEESS-HHH
T ss_pred EEEeccChhHcccce---EEEEEEEEcCCCCHHHHHHHHhcC-------cCeEE----EEEeECCCCEEEEEEECC-HHH
Confidence 344556777765332 1122344 4466566666666543 22221 135666779999999865 667
Q ss_pred hHHHHHHhcCCCcEEee
Q 023993 235 GVSAGTEIGKLEGVVEH 251 (274)
Q Consensus 235 ~~~l~~~l~~ipGVVe~ 251 (274)
.+++-++|..++||+.+
T Consensus 118 l~~~l~~l~~~~gv~~~ 134 (150)
T 2w25_A 118 LEDLLQRIRTTANVRTR 134 (150)
T ss_dssp HHHHHHHHHHHHTEEEE
T ss_pred HHHHHHHHhhcCCcceE
Confidence 77777788889999874
No 94
>4eu9_A Succinyl-COA:acetate coenzyme A transferase; HET: COA; 1.48A {Acetobacter aceti} PDB: 4eua_A* 4eu3_A* 4eu4_A* 4eu5_A* 4eu6_A* 4eu7_A* 4eu8_A* 4eub_A* 4euc_A* 4eud_A*
Probab=40.15 E-value=49 Score=32.01 Aligned_cols=41 Identities=24% Similarity=0.263 Sum_probs=31.6
Q ss_pred ChHHHHHHHHHHHHh----------cCCCCCEEEECcChHHHHHHHHHhch
Q 023993 42 TQDDLKKLAADKAVD----------YVKSGMALGLGTGSTAAFVVDRIGQL 82 (274)
Q Consensus 42 ~~~~~K~~iA~~A~~----------~I~dg~vIgLGsGSTv~~l~~~L~~~ 82 (274)
..++.-++||+..++ +++||.++=+|-|.....++..|.++
T Consensus 234 ~~~~~~~~Ia~~ia~~i~~e~~ag~l~~dG~~lQ~GiG~ip~AV~~~L~~~ 284 (514)
T 4eu9_A 234 APDETAKAIAGYLLDFFGHEVKQNRLPPSLLPLQSGVGNVANAVLEGLKEG 284 (514)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHTTSSCTTCCCEECCCSHHHHHHHHHHHHS
T ss_pred CCChhhhhHHHHHHHHHHHHHhhccccCCCceeccCCCchHHHHHHHHhhc
Confidence 334555556666554 78999999999999999999998764
No 95
>4es6_A Uroporphyrinogen-III synthase; heme-biosynthesis, cytoplasmi; 2.22A {Pseudomonas aeruginosa}
Probab=39.68 E-value=33 Score=29.23 Aligned_cols=53 Identities=15% Similarity=0.032 Sum_probs=41.7
Q ss_pred CCCEEEECcChHHHHHHHHHhchhhcCCCCCeEEECCcHHHHHHHHhCCCcEEEc
Q 023993 60 SGMALGLGTGSTAAFVVDRIGQLLKTGELRDIVGIPTSKRTEEQAKSLNIPLTTL 114 (274)
Q Consensus 60 dg~vIgLGsGSTv~~l~~~L~~~~~~~~l~~itvVT~S~~ta~~l~~~gi~vi~l 114 (274)
+-|.|-+-|++|+..|.+.+.+... .+.++.+++-+..|+..+++.|++.+..
T Consensus 185 ~~d~v~ftS~s~v~~~~~~~~~~~~--~l~~~~~~aIG~~Ta~~l~~~G~~~~~~ 237 (254)
T 4es6_A 185 RLNGLVVSSGQGLQNLYQLAAADWP--EIGRLPLFVPSPRVAEMARELGAQRVID 237 (254)
T ss_dssp TCCEEECCSHHHHHHHHHHHGGGHH--HHTTSCEEESSHHHHHHHHHTTCSSEEE
T ss_pred CCCEEEEcCHHHHHHHHHHhhHHHH--HHhCCeEEEECHHHHHHHHHcCCCceEE
Confidence 4589999999999999998865310 1236789999999999999999875543
No 96
>2nvv_A Acetyl-COA hydrolase/transferase family protein; alpha beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Porphyromonas gingivalis}
Probab=38.63 E-value=26 Score=33.99 Aligned_cols=117 Identities=19% Similarity=0.209 Sum_probs=70.3
Q ss_pred CChHHHHHHHHHHHHhc----CCCC------CEEEECcChHHHHHHHHHhchhhcCCCCCeEEECCcH-HHHHHHHhCC-
Q 023993 41 LTQDDLKKLAADKAVDY----VKSG------MALGLGTGSTAAFVVDRIGQLLKTGELRDIVGIPTSK-RTEEQAKSLN- 108 (274)
Q Consensus 41 ~~~~~~K~~iA~~A~~~----I~dg------~vIgLGsGSTv~~l~~~L~~~~~~~~l~~itvVT~S~-~ta~~l~~~g- 108 (274)
+..++.+++||+.|+++ |++| +++=+|-|+....++..|.+. +.++++.+-|--+ +....|.+.|
T Consensus 222 ~~~~~~~~~Ia~~~a~~i~~~~~~G~l~~~~~~lq~GiG~ip~aV~~~l~~~---~~~~~l~i~te~~~d~~~~lieaG~ 298 (506)
T 2nvv_A 222 APLDPVTQAIGDNVAAFLVSEMKAGRIPKDFLPLQSGVGNVANAVLGALGDN---PDIPAFNMYTEVIQDAVIALMKKGR 298 (506)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHHHTSSCTTCCCEEECSSHHHHHHHHHHHHC---TTSCCEEEECSEECHHHHHHHHTTS
T ss_pred CCCChHHHHHHHHHHHHHHhhhhcCcccCCCceEEeCCCHHHHHHHHHhhhc---CCcccceEEecccccchHHHHHCCC
Confidence 44557788899999985 3455 999999999999999999764 1023555443321 1122333444
Q ss_pred CcEE---EcCC---------------CC-----------------cc-cEEEEccCcccCCCCc----------ccCcch
Q 023993 109 IPLT---TLDD---------------HP-----------------SL-DLAIDGADEVDPELNL----------VKGRGG 142 (274)
Q Consensus 109 i~vi---~l~~---------------~~-----------------~i-D~afdGaD~Vd~~~~~----------ikg~gg 142 (274)
++.. .+.. .. +. +++|.||=+||..+++ +.|-||
T Consensus 299 i~~~~~~~f~~~~~g~~~~~~~~~~~~~~i~~~~~~~~N~p~~i~~~~~iain~alevD~~G~vn~~~~~g~~~~~G~GG 378 (506)
T 2nvv_A 299 IKFASGCSLSVSRSVIQDIYANLDFFKDKILLRPQEYSNNPEIVRRLGVITINTALEADIFGNINSTHVSGTRMMNGIGG 378 (506)
T ss_dssp EEEEEESEECCCHHHHHHHHTCHHHHTTTEEECBHHHHTCHHHHHHHTCEEEEECSEEETTSCEECSEETTTEECSCCTT
T ss_pred CCCeeeeEeecccccHHHHHhhHHhcCCceeeecccccCCHHHHhCCCcEEEehhheecCCCceeeeeccCCceEcccCc
Confidence 2311 1110 00 11 5999999999976544 223345
Q ss_pred hHHHHHHHHHhcCcEEEEEcCC
Q 023993 143 ALLREKMVEAASKSFVVVADES 164 (274)
Q Consensus 143 a~l~EKila~~S~~~IvLaD~s 164 (274)
+.= +++.|++.|+...++
T Consensus 379 ~~D----f~~gA~~si~~~~st 396 (506)
T 2nvv_A 379 SGD----FTRNSYVSIFTTPSV 396 (506)
T ss_dssp HHH----HHHHSSSEEEECCSE
T ss_pred HHH----HhhccCeEEEEeccc
Confidence 442 345788888777664
No 97
>2ko1_A CTR148A, GTP pyrophosphokinase; homodimer, alpha+beta, transferase, structural genomics, PSI-2, protein structure initiative; NMR {Chlorobaculum tepidum} PDB: 3ibw_A
Probab=38.55 E-value=42 Score=23.23 Aligned_cols=72 Identities=7% Similarity=0.075 Sum_probs=36.7
Q ss_pred ccccEEEecccHHHHHHHHHHhHhhcCCee-EEeecCCCCceEeCCCCEEEEeeCCCCCCChHHHHHHhcCCCcEEeee
Q 023993 175 LAMPVEVVQFCWKFNLVRLQDLFRELGCEA-KLREGENGKPYITDNFNYIIDLYFETPIKDGVSAGTEIGKLEGVVEHG 252 (274)
Q Consensus 175 ~plPvEV~p~a~~~v~~~l~~l~~~~g~~~-~lR~~~~~gp~vTdnGN~IlD~~f~~~i~d~~~l~~~l~~ipGVVe~G 252 (274)
++.-+.|.-....-++.++.+.|.+.|++. .++....++ ...+.+.+...+ ..+.+++-++|++++||.+.-
T Consensus 4 ~~~~l~v~~~Dr~G~L~~I~~~la~~~inI~~i~~~~~~~-----~~~~~i~v~~~~-~~~l~~l~~~L~~~~~V~~v~ 76 (88)
T 2ko1_A 4 FLAGIRIVGEDKNGMTNQITGVISKFDTNIRTIVLNAKDG-----IFTCNLMIFVKN-TDKLTTLMDKLRKVQGVFTVE 76 (88)
T ss_dssp EEEEEEEEEECCTTHHHHHHHHHTTSSSCEEEEEEEECSS-----EEEEEEEEEESS-HHHHHHHHHHHTTCTTEEEEE
T ss_pred EEEEEEEEEECCCcHHHHHHHHHHHCCCCeEEEEEEEcCC-----EEEEEEEEEECC-HHHHHHHHHHHhcCCCceEEE
Confidence 444455553333344445555555557654 223211101 112223333332 346678889999999998753
No 98
>4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A*
Probab=38.40 E-value=35 Score=29.55 Aligned_cols=58 Identities=21% Similarity=0.277 Sum_probs=38.2
Q ss_pred hHHHHHHHHHHHHhcCCCCC-EEEEC--cChHHHHHHHHHhchhhcCCCCCeEEECCcHHHHHHHH
Q 023993 43 QDDLKKLAADKAVDYVKSGM-ALGLG--TGSTAAFVVDRIGQLLKTGELRDIVGIPTSKRTEEQAK 105 (274)
Q Consensus 43 ~~~~K~~iA~~A~~~I~dg~-vIgLG--sGSTv~~l~~~L~~~~~~~~l~~itvVT~S~~ta~~l~ 105 (274)
.++.-+.++..|..++++|. ++=|| +|..+..+++.+... + -.++.|-.|......++
T Consensus 53 Y~~~~~~i~~l~~~~~~~~~~vLDlGcGtG~~~~~la~~~~~~----~-~~v~gvD~s~~ml~~A~ 113 (261)
T 4gek_A 53 YSNIISMIGMLAERFVQPGTQVYDLGCSLGAATLSVRRNIHHD----N-CKIIAIDNSPAMIERCR 113 (261)
T ss_dssp HHHHHHHHHHHHHHHCCTTCEEEEETCTTTHHHHHHHHTCCSS----S-CEEEEEESCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCCCEEEEEeCCCCHHHHHHHHhcCCC----C-CEEEEEECCHHHHHHHH
Confidence 44555678888889999997 44444 556666666654321 1 25889999987766554
No 99
>3css_A 6-phosphogluconolactonase; structural genomics, medical structural genomics of pathogen protozoa consortium, SGPP, leish hydrolase; 1.70A {Leishmania braziliensis} PDB: 3ch7_A
Probab=35.36 E-value=21 Score=31.36 Aligned_cols=21 Identities=24% Similarity=0.363 Sum_probs=18.7
Q ss_pred CCEEEECcChHHHHHHHHHhc
Q 023993 61 GMALGLGTGSTAAFVVDRIGQ 81 (274)
Q Consensus 61 g~vIgLGsGSTv~~l~~~L~~ 81 (274)
..+|+|.+|||...+.+.|.+
T Consensus 38 ~~~l~LsgGstp~~ly~~L~~ 58 (267)
T 3css_A 38 PVVLALSGGSTPKRLYEELHE 58 (267)
T ss_dssp CEEEEECCSSTTHHHHHHHHH
T ss_pred CEEEEEeCCCCHHHHHHHHHH
Confidence 569999999999999998875
No 100
>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}
Probab=35.28 E-value=1.3e+02 Score=25.74 Aligned_cols=50 Identities=18% Similarity=0.175 Sum_probs=35.1
Q ss_pred CCCCCEEEECcChHHHHHHHHHhchhhcCCCCCeEEECCcHH--HHHHHHhCCCcEE
Q 023993 58 VKSGMALGLGTGSTAAFVVDRIGQLLKTGELRDIVGIPTSKR--TEEQAKSLNIPLT 112 (274)
Q Consensus 58 I~dg~vIgLGsGSTv~~l~~~L~~~~~~~~l~~itvVT~S~~--ta~~l~~~gi~vi 112 (274)
+++..++-+|+|.....-++.|.+. | .++++|..... ...++.+.++.++
T Consensus 29 L~gk~VLVVGgG~va~~ka~~Ll~~---G--A~VtVvap~~~~~l~~l~~~~~i~~i 80 (223)
T 3dfz_A 29 LKGRSVLVVGGGTIATRRIKGFLQE---G--AAITVVAPTVSAEINEWEAKGQLRVK 80 (223)
T ss_dssp CTTCCEEEECCSHHHHHHHHHHGGG---C--CCEEEECSSCCHHHHHHHHTTSCEEE
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHC---C--CEEEEECCCCCHHHHHHHHcCCcEEE
Confidence 3566799999999999999988753 3 36999987653 2334444456654
No 101
>1jr2_A Uroporphyrinogen-III synthase; heme biosynthesis, HEAM biosynthesis, lyase; 1.84A {Homo sapiens} SCOP: c.113.1.1
Probab=35.12 E-value=35 Score=29.71 Aligned_cols=53 Identities=11% Similarity=0.145 Sum_probs=41.1
Q ss_pred CCCCEEEECcChHHHHHHHHHhchhhcCCCCCeEEECCcHHHHHHHHhCCCcEE
Q 023993 59 KSGMALGLGTGSTAAFVVDRIGQLLKTGELRDIVGIPTSKRTEEQAKSLNIPLT 112 (274)
Q Consensus 59 ~dg~vIgLGsGSTv~~l~~~L~~~~~~~~l~~itvVT~S~~ta~~l~~~gi~vi 112 (274)
.+-|.|-+-|++|+..|.+.+.+.. ...+.++++++-+..|+..|.+.|++.+
T Consensus 209 ~~~d~v~ftS~~~v~~f~~~~~~~~-~~~l~~~~i~aIG~~Ta~~l~~~G~~~~ 261 (286)
T 1jr2_A 209 GVPASITFFSPSGLTYSLKHIQELS-GDNIDQIKFAAIGPTTARALAAQGLPVS 261 (286)
T ss_dssp CSCSEEEESSHHHHHHHHHHHHHHH-GGGGGGSEEEESSHHHHHHHHHTTCCCS
T ss_pred CCCCEEEEEChHHHHHHHHHHhhhc-cccccCCEEEEECHHHHHHHHHcCCCce
Confidence 4558999999999999999886410 0112468899999999999999998643
No 102
>2cfx_A HTH-type transcriptional regulator LRPC; transcriptional regulation, DNA binding, FFRP; 2.4A {Bacillus subtilis} SCOP: a.4.5.32 d.58.4.2
Probab=34.82 E-value=52 Score=25.50 Aligned_cols=74 Identities=15% Similarity=0.078 Sum_probs=46.8
Q ss_pred EEEEEcCCcccccCCCCcccccEEEecccHHHHHHHHHHhHhhcCCeeEEeecCCCCceEeCCCCEEEEeeCCCCCCChH
Q 023993 157 FVVVADESKLVSGLGGSKLAMPVEVVQFCWKFNLVRLQDLFRELGCEAKLREGENGKPYITDNFNYIIDLYFETPIKDGV 236 (274)
Q Consensus 157 ~IvLaD~sK~~~~Lg~~~~plPvEV~p~a~~~v~~~l~~l~~~~g~~~~lR~~~~~gp~vTdnGN~IlD~~f~~~i~d~~ 236 (274)
+....|..|++..+ ..-+-+.+.|.....+.+.|.++ |.++. -..+|-+.|+++-+.+. |.+
T Consensus 52 ~~~~~d~~~~g~~~---~a~v~v~~~~~~~~~~~~~l~~~-------p~V~~----~~~~tG~~d~~~~v~~~----~~~ 113 (144)
T 2cfx_A 52 YTLEVDQKKLGLPV---SCIVEATVKNADYERFKSYIQTL-------PNIEF----CYRIAGAACYMLKINAE----SLE 113 (144)
T ss_dssp EEEEECTGGGTCCE---EEEEEEEEGGGCHHHHHHHHHTC-------TTEEE----EEEEESSSSEEEEEEES----SHH
T ss_pred EecccChhhcCceE---EEEEEEEECcccHHHHHHHHhcC-------hhhhe----eeeeeCCCCEEEEEEEC----CHH
Confidence 44567887776443 12345667788888888888664 22222 13567677999999874 466
Q ss_pred HHHHHhcCCCcE
Q 023993 237 SAGTEIGKLEGV 248 (274)
Q Consensus 237 ~l~~~l~~ipGV 248 (274)
++++.+..+++|
T Consensus 114 ~l~~~~~~l~~v 125 (144)
T 2cfx_A 114 AVEDFINKTSPY 125 (144)
T ss_dssp HHHHHHHHHTTT
T ss_pred HHHHHHHHhcCc
Confidence 666666666663
No 103
>1uh6_A Ubiquitin-like 5; beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=34.69 E-value=37 Score=25.82 Aligned_cols=45 Identities=31% Similarity=0.448 Sum_probs=31.9
Q ss_pred cccccCCcccccCCCCCCCc--------c-ccccccccccCCChHHHHHHHHHH
Q 023993 9 TLHHSTSAHFLPRAPKSLRP--------R-AISIKAQAVPALTQDDLKKLAADK 53 (274)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~--------~-~~~~~~~~~~~~~~~~~K~~iA~~ 53 (274)
.-|||..++.+|+.-....+ + ..+....+.+..+..+.|+.|+.+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~mm~I~VKtl~Gk~i~lev~p~dTV~~lK~~Ia~k 61 (100)
T 1uh6_A 8 HHHHSSGASLVPRGSEGAATMIEVVCNDRLGKKVRVKCNTDDTIGDLKKLIAAQ 61 (100)
T ss_dssp CCCCCCCCSSCCCCCSSCCCEEEEEEECSSSSCEEEEEETTSBHHHHHHHHHHH
T ss_pred ccccccccccccccCCCCCCeEEEEEECCCCCEEEEEeCCCCcHHHHHHHHHHH
Confidence 35788889998885544442 1 234456777778888999999887
No 104
>3mw8_A Uroporphyrinogen-III synthase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, lyase; 1.65A {Shewanella amazonensis}
Probab=33.78 E-value=37 Score=28.58 Aligned_cols=54 Identities=20% Similarity=0.100 Sum_probs=41.1
Q ss_pred CCCEEEECcChHHHHHHHHHhchhhcCCCCCeEEECCcHHHHHHHHhCCCcEEEc
Q 023993 60 SGMALGLGTGSTAAFVVDRIGQLLKTGELRDIVGIPTSKRTEEQAKSLNIPLTTL 114 (274)
Q Consensus 60 dg~vIgLGsGSTv~~l~~~L~~~~~~~~l~~itvVT~S~~ta~~l~~~gi~vi~l 114 (274)
+-|.|-+-|++|+..|.+.+.+... ..+.++.+++-|..|+..+++.|++.+..
T Consensus 172 ~~d~v~ftS~s~v~~~~~~~~~~~~-~~l~~~~~~aiG~~ta~~l~~~G~~~~~v 225 (240)
T 3mw8_A 172 GIDTIVVTSGEVLENLINLVPKDSF-AWLRDCHIIVPSARVETQARKKGLRRVTN 225 (240)
T ss_dssp TCCEEECCSHHHHHHHHHHSCGGGH-HHHHHSEEEESSHHHHHHHHHTTCCCEEE
T ss_pred CCCEEEEcCHHHHHHHHHHcchHHH-HHHhCCCEEEECHHHHHHHHHcCCCceEe
Confidence 3479999999999999998764210 01125788999999999999999876543
No 105
>1vl1_A 6PGL, 6-phosphogluconolactonase; TM1154, structural genomics, JCSG structure initiative, PSI, joint center for structural GENO hydrolase; HET: CIT; 1.55A {Thermotoga maritima} SCOP: c.124.1.1 PDB: 1pbt_A
Probab=33.70 E-value=12 Score=32.37 Aligned_cols=22 Identities=18% Similarity=0.280 Sum_probs=19.5
Q ss_pred CCCEEEECcChHHHHHHHHHhc
Q 023993 60 SGMALGLGTGSTAAFVVDRIGQ 81 (274)
Q Consensus 60 dg~vIgLGsGSTv~~l~~~L~~ 81 (274)
...+|+|.+|||...+.+.|.+
T Consensus 45 ~~~~l~LsgGsTp~~ly~~L~~ 66 (232)
T 1vl1_A 45 DKIFVVLAGGRTPLPVYEKLAE 66 (232)
T ss_dssp SCEEEEECCSTTHHHHHHHHTT
T ss_pred CCeEEEEcCCccHHHHHHHHHH
Confidence 3679999999999999999974
No 106
>2xzm_B RPS0E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_B
Probab=33.60 E-value=2.4e+02 Score=24.63 Aligned_cols=85 Identities=15% Similarity=0.135 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHHhcCC-CCCEEEECcChHHHHHHHHHhch-----h-h----cC----------CCCCeEEECCc---HH
Q 023993 44 DDLKKLAADKAVDYVK-SGMALGLGTGSTAAFVVDRIGQL-----L-K----TG----------ELRDIVGIPTS---KR 99 (274)
Q Consensus 44 ~~~K~~iA~~A~~~I~-dg~vIgLGsGSTv~~l~~~L~~~-----~-~----~~----------~l~~itvVT~S---~~ 99 (274)
.-.|...|..++..++ .|+++++|+-......++..+.+ + . .| .++++.+|++- ..
T Consensus 49 T~~~L~~A~~~i~~i~~~~~iLfVgtk~~~~~~V~~~A~~~g~~yv~~~RWlgG~LTN~~t~~~~~PdlliV~Dp~~e~~ 128 (241)
T 2xzm_B 49 TWQKIKLAARVIAAVQHPEDVMVVCSRIYGQRAAIKFAGYTHCKSTSSSRWTPGTLTNYQTLKYEEPRVLIVTDPRSDFQ 128 (241)
T ss_dssp HHHHHHHHHHHHHHCSSGGGEEEECCSHHHHHHHHHHHHHHTCBCCCCSSCCTTTTTCTTCTTCCCCSEEEESCTTTTHH
T ss_pred HHHHHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHhCCEEeccccccCCcccCccccccCCCCEEEEECCCcchH
Confidence 3445555555554464 67899999988776665554332 1 0 01 23567788763 23
Q ss_pred HHHHHHhCCCcEEEcCCC----CcccEEEEccC
Q 023993 100 TEEQAKSLNIPLTTLDDH----PSLDLAIDGAD 128 (274)
Q Consensus 100 ta~~l~~~gi~vi~l~~~----~~iD~afdGaD 128 (274)
...+|...|||++.+-+. ..+|+.|=|-|
T Consensus 129 ai~EA~~l~IPvIalvDTn~~p~~VDy~IP~Nd 161 (241)
T 2xzm_B 129 AIKEASYVNIPVIALCDSDSPLAYVDVVIPCNN 161 (241)
T ss_dssp HHHHHTTTTCCEEECCCSSSCCTTCCEECCSCC
T ss_pred HHHHHHHhCCCEEEEecCCCCcccccEEEeCCC
Confidence 455788899999986432 35666665543
No 107
>1vp8_A Hypothetical protein AF0103; putative pyruvate kinase, structural genomics, joint center structural genomics, JCSG; HET: MSE FMN; 1.30A {Archaeoglobus fulgidus} SCOP: c.49.1.2
Probab=33.50 E-value=94 Score=26.72 Aligned_cols=68 Identities=13% Similarity=0.173 Sum_probs=48.1
Q ss_pred CChHHHHHHHHHHHHhcCCCCCEEEECcChHHHHHHHHHhchhhcCCCCCeEEECC------------cHHHHHHHHhCC
Q 023993 41 LTQDDLKKLAADKAVDYVKSGMALGLGTGSTAAFVVDRIGQLLKTGELRDIVGIPT------------SKRTEEQAKSLN 108 (274)
Q Consensus 41 ~~~~~~K~~iA~~A~~~I~dg~vIgLGsGSTv~~l~~~L~~~~~~~~l~~itvVT~------------S~~ta~~l~~~g 108 (274)
.|.++.=+.+.++|.++==+.=+|.=-+|.|...+++.+.+ .++.+||. |.++...|++.|
T Consensus 26 eNT~~tl~la~era~e~~Ik~iVVAS~sG~TA~k~~e~~~~-------i~lVvVTh~~GF~~pg~~e~~~e~~~~L~~~G 98 (201)
T 1vp8_A 26 ENTEETLRLAVERAKELGIKHLVVASSYGDTAMKALEMAEG-------LEVVVVTYHTGFVREGENTMPPEVEEELRKRG 98 (201)
T ss_dssp GGHHHHHHHHHHHHHHHTCCEEEEECSSSHHHHHHHHHCTT-------CEEEEEECCTTSSSTTCCSSCHHHHHHHHHTT
T ss_pred ccHHHHHHHHHHHHHHcCCCEEEEEeCCChHHHHHHHHhcC-------CeEEEEeCcCCCCCCCCCcCCHHHHHHHHhCC
Confidence 34444445556666666333557888899999998886621 36889983 668888999999
Q ss_pred CcEEEcC
Q 023993 109 IPLTTLD 115 (274)
Q Consensus 109 i~vi~l~ 115 (274)
++|+.-.
T Consensus 99 ~~V~t~t 105 (201)
T 1vp8_A 99 AKIVRQS 105 (201)
T ss_dssp CEEEECC
T ss_pred CEEEEEe
Confidence 9988643
No 108
>3i8o_A KH domain-containing protein MJ1533; APC89320.5, methanocaldococcus jannaschii DSM 2661, structural genomics, PSI-2; 2.64A {Methanocaldococcus jannaschii}
Probab=30.95 E-value=58 Score=26.38 Aligned_cols=28 Identities=14% Similarity=0.050 Sum_probs=25.1
Q ss_pred CeEEECCcHHHHHHHHhCCCcEEEcCCC
Q 023993 90 DIVGIPTSKRTEEQAKSLNIPLTTLDDH 117 (274)
Q Consensus 90 ~itvVT~S~~ta~~l~~~gi~vi~l~~~ 117 (274)
+.++|||+......|...|++++.+...
T Consensus 106 ~a~lvTnD~~l~kvA~~~GI~V~~l~~~ 133 (142)
T 3i8o_A 106 NSILLTSDWIQYNLAKAQGIEAYFLEAA 133 (142)
T ss_dssp TCEEEESCHHHHHHHHHTTCCEEECCCC
T ss_pred CCEEEcCCHHHHHHHHHcCCEEEEeccc
Confidence 6789999999999999999999988653
No 109
>3phh_A Shikimate dehydrogenase; shikimate pathway, helicobacter PYL oxidoreductase, alpha/beta domain, rossmann fold; HET: SKM; 1.42A {Helicobacter pylori} PDB: 3phg_A* 3phi_A* 3phj_A* 4foo_A 4fpx_A 4fos_A* 4fr5_A* 4fq8_A*
Probab=30.51 E-value=74 Score=28.13 Aligned_cols=63 Identities=21% Similarity=0.205 Sum_probs=44.8
Q ss_pred CCCEEEECcChHHHHHHHHHhchhhcCCCCCeEEECCcHHHHHHHHhCCCcEEEcCCCCcccEEEEcc
Q 023993 60 SGMALGLGTGSTAAFVVDRIGQLLKTGELRDIVGIPTSKRTEEQAKSLNIPLTTLDDHPSLDLAIDGA 127 (274)
Q Consensus 60 dg~vIgLGsGSTv~~l~~~L~~~~~~~~l~~itvVT~S~~ta~~l~~~gi~vi~l~~~~~iD~afdGa 127 (274)
...++.||+|-+...++..|.+. | .+++++.-+..-+..+.+.+++...+.+....|+.|...
T Consensus 118 ~k~vlvlGaGGaaraia~~L~~~---G--~~v~V~nRt~~ka~~la~~~~~~~~~~~l~~~DiVInaT 180 (269)
T 3phh_A 118 YQNALILGAGGSAKALACELKKQ---G--LQVSVLNRSSRGLDFFQRLGCDCFMEPPKSAFDLIINAT 180 (269)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHT---T--CEEEEECSSCTTHHHHHHHTCEEESSCCSSCCSEEEECC
T ss_pred CCEEEEECCCHHHHHHHHHHHHC---C--CEEEEEeCCHHHHHHHHHCCCeEecHHHhccCCEEEEcc
Confidence 34578899999999999998753 3 468888777766655546666666555555678877543
No 110
>1zcz_A Bifunctional purine biosynthesis protein PURH; TM1249; HET: PG4; 1.88A {Thermotoga maritima} SCOP: c.24.1.3 c.97.1.4
Probab=29.52 E-value=32 Score=33.27 Aligned_cols=79 Identities=14% Similarity=0.174 Sum_probs=43.0
Q ss_pred cccccCCChHHHHHHHHHHHHhcCC--------CCCEEEECcChHHHHHHHHHhchhhcCCCCCeEEECCc----HHHHH
Q 023993 35 AQAVPALTQDDLKKLAADKAVDYVK--------SGMALGLGTGSTAAFVVDRIGQLLKTGELRDIVGIPTS----KRTEE 102 (274)
Q Consensus 35 ~~~~~~~~~~~~K~~iA~~A~~~I~--------dg~vIgLGsGSTv~~l~~~L~~~~~~~~l~~itvVT~S----~~ta~ 102 (274)
+|-+++...+-.-...|.+++++++ +|++||+|+|-+..-=+-+|+-.-..+..++...-+.- .+...
T Consensus 342 VT~~~pt~~e~~DL~FAwkv~K~vKSNAIv~akdg~tvGiGaGQ~sRV~s~riA~~kA~~~~~G~vlASDAFFPF~D~v~ 421 (464)
T 1zcz_A 342 VVGEPLSEKELEDLEFAYRVVEGAKSNAVLIAKDGVTVGIGSGQPSRKRAAWIATVMAGEKAKGAVAASDAFFPFPDSLE 421 (464)
T ss_dssp EESCCCCHHHHHHHHHHHHHHHHSCSSCEEEEETTEEEEEECSCSSHHHHHHHHHHHHGGGGTTCEEEESSCCSSHHHHH
T ss_pred ecCCCCCHHHHHHHHHHHHHHhhcccceEEEEeCCeEEEECCCCCchHHHHHHHHHHhhcccCCeEEEecccCCchhhHH
Confidence 3434444444334457888999885 77899999997665444445421111111222222211 14555
Q ss_pred HHHhCCCcEEE
Q 023993 103 QAKSLNIPLTT 113 (274)
Q Consensus 103 ~l~~~gi~vi~ 113 (274)
.+.+.|++-+.
T Consensus 422 ~aa~aGv~aIi 432 (464)
T 1zcz_A 422 ILAQAGVKAVV 432 (464)
T ss_dssp HHHHTTCCEEE
T ss_pred HHHHhCCeEEE
Confidence 66777876544
No 111
>2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida}
Probab=28.82 E-value=2.2e+02 Score=25.56 Aligned_cols=68 Identities=16% Similarity=0.186 Sum_probs=39.0
Q ss_pred cCCCCCEE-EECcChHHHHHHHHHhchhhcCCCCCeEEECCcHHHHHHHHhCCCcEEEcCCC-------------CcccE
Q 023993 57 YVKSGMAL-GLGTGSTAAFVVDRIGQLLKTGELRDIVGIPTSKRTEEQAKSLNIPLTTLDDH-------------PSLDL 122 (274)
Q Consensus 57 ~I~dg~vI-gLGsGSTv~~l~~~L~~~~~~~~l~~itvVT~S~~ta~~l~~~gi~vi~l~~~-------------~~iD~ 122 (274)
-+++|++| -+|+|..=...++..... | ...+.++..|..-...+++.|..++..... ..+|+
T Consensus 182 ~~~~g~~VlV~GaG~vG~~aiqlak~~---G-a~~Vi~~~~~~~~~~~a~~lGa~~i~~~~~~~~~~~~~~~~~g~g~Dv 257 (398)
T 2dph_A 182 GVKPGSHVYIAGAGPVGRCAAAGARLL---G-AACVIVGDQNPERLKLLSDAGFETIDLRNSAPLRDQIDQILGKPEVDC 257 (398)
T ss_dssp TCCTTCEEEEECCSHHHHHHHHHHHHH---T-CSEEEEEESCHHHHHHHHTTTCEEEETTSSSCHHHHHHHHHSSSCEEE
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHc---C-CCEEEEEcCCHHHHHHHHHcCCcEEcCCCcchHHHHHHHHhCCCCCCE
Confidence 36788844 456665444444433321 2 124666666766667778888876554321 14788
Q ss_pred EEEccC
Q 023993 123 AIDGAD 128 (274)
Q Consensus 123 afdGaD 128 (274)
+||.+.
T Consensus 258 vid~~g 263 (398)
T 2dph_A 258 GVDAVG 263 (398)
T ss_dssp EEECSC
T ss_pred EEECCC
Confidence 888664
No 112
>1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1
Probab=28.78 E-value=2.3e+02 Score=25.35 Aligned_cols=68 Identities=19% Similarity=0.212 Sum_probs=39.1
Q ss_pred cCCCCCEEE-ECcChHHHHHHHHHhchhhcCCCCCeEEECCcHHHHHHHHhCCCcEEEcCCC-------------CcccE
Q 023993 57 YVKSGMALG-LGTGSTAAFVVDRIGQLLKTGELRDIVGIPTSKRTEEQAKSLNIPLTTLDDH-------------PSLDL 122 (274)
Q Consensus 57 ~I~dg~vIg-LGsGSTv~~l~~~L~~~~~~~~l~~itvVT~S~~ta~~l~~~gi~vi~l~~~-------------~~iD~ 122 (274)
-+++|++|. +|+|..=...++..... | ...+.++..|..-...++++|..++..... ..+|+
T Consensus 182 ~~~~g~~VlV~GaG~vG~~aiqlAk~~---G-a~~Vi~~~~~~~~~~~a~~lGa~~i~~~~~~~~~~~v~~~t~g~g~Dv 257 (398)
T 1kol_A 182 GVGPGSTVYVAGAGPVGLAAAASARLL---G-AAVVIVGDLNPARLAHAKAQGFEIADLSLDTPLHEQIAALLGEPEVDC 257 (398)
T ss_dssp TCCTTCEEEEECCSHHHHHHHHHHHHT---T-CSEEEEEESCHHHHHHHHHTTCEEEETTSSSCHHHHHHHHHSSSCEEE
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHHHC---C-CCeEEEEcCCHHHHHHHHHcCCcEEccCCcchHHHHHHHHhCCCCCCE
Confidence 467888554 56554444444433321 2 124666666766666778889876554321 14788
Q ss_pred EEEccC
Q 023993 123 AIDGAD 128 (274)
Q Consensus 123 afdGaD 128 (274)
+||.+.
T Consensus 258 vid~~G 263 (398)
T 1kol_A 258 AVDAVG 263 (398)
T ss_dssp EEECCC
T ss_pred EEECCC
Confidence 888664
No 113
>4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix}
Probab=28.45 E-value=54 Score=28.35 Aligned_cols=53 Identities=34% Similarity=0.388 Sum_probs=34.3
Q ss_pred HHHHHHH-HHh--cCCCCC-EE--EECcChHHHHHHHHHhchhhcCCCCCeEEECCcHHHHHHHH
Q 023993 47 KKLAADK-AVD--YVKSGM-AL--GLGTGSTAAFVVDRIGQLLKTGELRDIVGIPTSKRTEEQAK 105 (274)
Q Consensus 47 K~~iA~~-A~~--~I~dg~-vI--gLGsGSTv~~l~~~L~~~~~~~~l~~itvVT~S~~ta~~l~ 105 (274)
|.++|.. .++ .+++|+ ++ |-|+|+|+..+++..+.. | .+..|-.|......+.
T Consensus 61 klaa~i~~gl~~l~ikpG~~VldlG~G~G~~~~~la~~VG~~---G---~V~avD~s~~~~~~l~ 119 (233)
T 4df3_A 61 KLAAALLKGLIELPVKEGDRILYLGIASGTTASHMSDIIGPR---G---RIYGVEFAPRVMRDLL 119 (233)
T ss_dssp HHHHHHHTTCSCCCCCTTCEEEEETCTTSHHHHHHHHHHCTT---C---EEEEEECCHHHHHHHH
T ss_pred HHHHHHHhchhhcCCCCCCEEEEecCcCCHHHHHHHHHhCCC---c---eEEEEeCCHHHHHHHH
Confidence 5554433 222 268999 44 455567999998877642 1 4888888887766553
No 114
>4ehi_A Bifunctional purine biosynthesis protein PURH; structural genomics, center for structural genomics of infec diseases, csgid; HET: MSE BTB; 2.28A {Campylobacter jejuni subsp}
Probab=27.52 E-value=36 Score=33.48 Aligned_cols=78 Identities=17% Similarity=0.193 Sum_probs=44.0
Q ss_pred ccccCCChHHHHHHHHHHHHhcCC--------CCCEEEECcChHHHHHHHHHh-chhhc-C-CCCCeEEECCcH----HH
Q 023993 36 QAVPALTQDDLKKLAADKAVDYVK--------SGMALGLGTGSTAAFVVDRIG-QLLKT-G-ELRDIVGIPTSK----RT 100 (274)
Q Consensus 36 ~~~~~~~~~~~K~~iA~~A~~~I~--------dg~vIgLGsGSTv~~l~~~L~-~~~~~-~-~l~~itvVT~S~----~t 100 (274)
|-+++...+-.-...|.+++++++ +|++||+|+|-+..-=+-+|+ ++-.+ | .+.+....+.-+ +.
T Consensus 410 T~~~pt~~e~~DL~FAw~v~K~vKSNAIv~akdg~tvGiGaGQ~sRV~s~r~A~~kA~~~g~~~~G~vlASDAFFPF~D~ 489 (534)
T 4ehi_A 410 SQREASKEELKDLEIAMKIAAFTKSNNVVYVKNGAMVAIGMGMTSRIDAAKAAIAKAKEMGLDLQGCVLASEAFFPFRDS 489 (534)
T ss_dssp SSBCCCHHHHHHHHHHHHHHHHSCSSCEEEEETTEEEEEECSSSCHHHHHHHHHHHHHHTTCCCTTCEEECSSCCCSTHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHhcCCceEEEEeCCeEEEECCCCcchHHHHHHHHHHHHhhccCCCCeEEEeccccCCCcc
Confidence 334443333333567889999985 678999999977655444554 22111 1 123443333221 45
Q ss_pred HHHHHhCCCcEEE
Q 023993 101 EEQAKSLNIPLTT 113 (274)
Q Consensus 101 a~~l~~~gi~vi~ 113 (274)
...+.+.|++-+.
T Consensus 490 ve~Aa~aGV~aIi 502 (534)
T 4ehi_A 490 IDEASKVGVKAIV 502 (534)
T ss_dssp HHHHHHTTCCEEE
T ss_pred HHHHHHcCCEEEE
Confidence 5566777887544
No 115
>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}
Probab=27.47 E-value=2.3e+02 Score=22.90 Aligned_cols=47 Identities=15% Similarity=0.135 Sum_probs=36.5
Q ss_pred EEEECcChHHHHHHHHHhchhhcCCCCCeEEECCcHHHHHHHH-hCCCcEEEc
Q 023993 63 ALGLGTGSTAAFVVDRIGQLLKTGELRDIVGIPTSKRTEEQAK-SLNIPLTTL 114 (274)
Q Consensus 63 vIgLGsGSTv~~l~~~L~~~~~~~~l~~itvVT~S~~ta~~l~-~~gi~vi~l 114 (274)
++-+|.|..-..+++.|.+. | .+++++..+......+. ..|.+++.-
T Consensus 3 iiIiG~G~~G~~la~~L~~~---g--~~v~vid~~~~~~~~l~~~~~~~~i~g 50 (218)
T 3l4b_C 3 VIIIGGETTAYYLARSMLSR---K--YGVVIINKDRELCEEFAKKLKATIIHG 50 (218)
T ss_dssp EEEECCHHHHHHHHHHHHHT---T--CCEEEEESCHHHHHHHHHHSSSEEEES
T ss_pred EEEECCCHHHHHHHHHHHhC---C--CeEEEEECCHHHHHHHHHHcCCeEEEc
Confidence 78899999999999998753 2 47999999988777654 567776653
No 116
>1aj0_A DHPS, dihydropteroate synthase; antibiotic, resistance, transferase, folate, biosynthesis; HET: PH2 SAN; 2.00A {Escherichia coli} SCOP: c.1.21.1 PDB: 1aj2_A* 1ajz_A 3tyz_A* 3tyu_A* 3tzf_A* 3tzn_A
Probab=25.59 E-value=78 Score=28.24 Aligned_cols=61 Identities=20% Similarity=0.143 Sum_probs=41.7
Q ss_pred HHHHHHHHhcCCCC-CEEEECcChH---------------HHHHHHHHhchhhcCCCCCeEEECCcHHHHHHHHhCCCcE
Q 023993 48 KLAADKAVDYVKSG-MALGLGTGST---------------AAFVVDRIGQLLKTGELRDIVGIPTSKRTEEQAKSLNIPL 111 (274)
Q Consensus 48 ~~iA~~A~~~I~dg-~vIgLGsGST---------------v~~l~~~L~~~~~~~~l~~itvVT~S~~ta~~l~~~gi~v 111 (274)
..+-+.|.+++++| ++|=||+-|| +..+++.|.+.. . ..+.+=|....++..+-+.|..+
T Consensus 38 ~~a~~~a~~~v~~GAdiIDIGgestrPga~~v~~~eE~~rv~pvi~~l~~~~---~-~piSIDT~~~~va~aAl~aGa~i 113 (282)
T 1aj0_A 38 IDAVKHANLMINAGATIIDVGGESTRPGAAEVSVEEELQRVIPVVEAIAQRF---E-VWISVDTSKPEVIRESAKVGAHI 113 (282)
T ss_dssp HHHHHHHHHHHHHTCSEEEEESSCCSTTCCCCCHHHHHHHHHHHHHHHHHHC---C-CEEEEECCCHHHHHHHHHTTCCE
T ss_pred HHHHHHHHHHHHCCCCEEEECCCcCCCCCCcCCHHHHHHHHHHHHHHHHhhc---C-CeEEEeCCCHHHHHHHHHcCCCE
Confidence 44556688999998 6999998666 334444443321 2 24888888889988887777665
Q ss_pred E
Q 023993 112 T 112 (274)
Q Consensus 112 i 112 (274)
+
T Consensus 114 I 114 (282)
T 1aj0_A 114 I 114 (282)
T ss_dssp E
T ss_pred E
Confidence 5
No 117
>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*
Probab=25.02 E-value=88 Score=24.15 Aligned_cols=48 Identities=8% Similarity=0.129 Sum_probs=34.7
Q ss_pred CCEEEECcChHHHHHHHHHhchhhcCCCCCeEEECCcHHHHHHHH-hCCCcEEE
Q 023993 61 GMALGLGTGSTAAFVVDRIGQLLKTGELRDIVGIPTSKRTEEQAK-SLNIPLTT 113 (274)
Q Consensus 61 g~vIgLGsGSTv~~l~~~L~~~~~~~~l~~itvVT~S~~ta~~l~-~~gi~vi~ 113 (274)
..++-+|+|..-..+++.|.+. | .+++++..+......+. ..|..++.
T Consensus 20 ~~v~IiG~G~iG~~la~~L~~~---g--~~V~vid~~~~~~~~~~~~~g~~~~~ 68 (155)
T 2g1u_A 20 KYIVIFGCGRLGSLIANLASSS---G--HSVVVVDKNEYAFHRLNSEFSGFTVV 68 (155)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT---T--CEEEEEESCGGGGGGSCTTCCSEEEE
T ss_pred CcEEEECCCHHHHHHHHHHHhC---C--CeEEEEECCHHHHHHHHhcCCCcEEE
Confidence 3488899999999999998653 2 36888888776655555 56666553
No 118
>3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii}
Probab=24.96 E-value=2.4e+02 Score=24.37 Aligned_cols=72 Identities=18% Similarity=0.248 Sum_probs=40.2
Q ss_pred HHHHH--hcCCCCCEEEE-C-cChHHHHHHHHHhchhhcCCCCCeEEECCcHHHHHHHHhCCCc-EEEcCCC-------C
Q 023993 51 ADKAV--DYVKSGMALGL-G-TGSTAAFVVDRIGQLLKTGELRDIVGIPTSKRTEEQAKSLNIP-LTTLDDH-------P 118 (274)
Q Consensus 51 A~~A~--~~I~dg~vIgL-G-sGSTv~~l~~~L~~~~~~~~l~~itvVT~S~~ta~~l~~~gi~-vi~l~~~-------~ 118 (274)
|..|+ .-+++|++|.+ | +|..=...++.+... | . .+.++.++.. ...+++.|.. ++..... .
T Consensus 141 a~~al~~~~~~~g~~vlV~Ga~G~vG~~a~q~a~~~---G-a-~vi~~~~~~~-~~~~~~lGa~~~i~~~~~~~~~~~~~ 214 (321)
T 3tqh_A 141 ALQALNQAEVKQGDVVLIHAGAGGVGHLAIQLAKQK---G-T-TVITTASKRN-HAFLKALGAEQCINYHEEDFLLAIST 214 (321)
T ss_dssp HHHHHHHTTCCTTCEEEESSTTSHHHHHHHHHHHHT---T-C-EEEEEECHHH-HHHHHHHTCSEEEETTTSCHHHHCCS
T ss_pred HHHHHHhcCCCCCCEEEEEcCCcHHHHHHHHHHHHc---C-C-EEEEEeccch-HHHHHHcCCCEEEeCCCcchhhhhcc
Confidence 44444 34689998888 3 565555555544322 2 1 3544444433 5566778876 4444332 2
Q ss_pred cccEEEEccC
Q 023993 119 SLDLAIDGAD 128 (274)
Q Consensus 119 ~iD~afdGaD 128 (274)
.+|++||.+.
T Consensus 215 g~D~v~d~~g 224 (321)
T 3tqh_A 215 PVDAVIDLVG 224 (321)
T ss_dssp CEEEEEESSC
T ss_pred CCCEEEECCC
Confidence 4788888654
No 119
>3mvn_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamayl-M diaminopimelate ligase; structural genomics, MCSG, PSI-2; 1.90A {Haemophilus ducreyi}
Probab=23.82 E-value=57 Score=26.02 Aligned_cols=35 Identities=11% Similarity=0.026 Sum_probs=23.2
Q ss_pred HHHHHHHHHhcCCCCCE-EEECcChHHHHHHHHHhch
Q 023993 47 KKLAADKAVDYVKSGMA-LGLGTGSTAAFVVDRIGQL 82 (274)
Q Consensus 47 K~~iA~~A~~~I~dg~v-IgLGsGSTv~~l~~~L~~~ 82 (274)
++.+.+.+.++.++||+ +..|+|+ ...+++.|.+.
T Consensus 125 ~~eai~~~~~~~~~gDvVLv~Gsg~-~~~~~~~l~~~ 160 (163)
T 3mvn_A 125 VDELVMRIVQQAKPNDHILIMSNGA-FGGIHQKLLTA 160 (163)
T ss_dssp HHHHHHHHHHHCCTTCEEEEECSSC-GGGHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCEEEEECCCC-HHHHHHHHHHH
Confidence 34566677888999984 5568887 44555655543
No 120
>3re1_A Uroporphyrinogen-III synthetase; HEMD-like family, uroporphyrinogen III synthase, HMB, lyase; 2.50A {Pseudomonas syringae PV}
Probab=23.57 E-value=39 Score=29.20 Aligned_cols=55 Identities=15% Similarity=0.053 Sum_probs=0.0
Q ss_pred CEEEECcChHHHHHHHHHhch---hhcCCCCCeEEECCcHHHHHHHHhCCCcEEEcCCCCccc
Q 023993 62 MALGLGTGSTAAFVVDRIGQL---LKTGELRDIVGIPTSKRTEEQAKSLNIPLTTLDDHPSLD 121 (274)
Q Consensus 62 ~vIgLGsGSTv~~l~~~L~~~---~~~~~l~~itvVT~S~~ta~~l~~~gi~vi~l~~~~~iD 121 (274)
|.|-+-|++|+..|.+.+.+. ++ ++.+++-+..|+..+++.|++.+.....+..+
T Consensus 195 d~v~ftS~s~v~~~~~~~~~~~~~l~-----~~~~~aIG~~Ta~~l~~~G~~~~~va~~~t~~ 252 (269)
T 3re1_A 195 NGLVVSSGQGFEHLLQLAGDSWPDLA-----GLPLFVPSPRVASLAQAAGARNVIDCRGASAA 252 (269)
T ss_dssp CEEECSSHHHHTTTHHHHGGGHHHHT-----TSCEEESSHHHHHHHHHHTCSSEEECSSSSHH
T ss_pred CEEEEcCHHHHHHHHHHhhHHHHHHh-----CCeEEEECHHHHHHHHHCCCCceEECCCCCHH
No 121
>3s5o_A 4-hydroxy-2-oxoglutarate aldolase, mitochondrial; beta barrel, schiff base, hydroxyproline metabolis; HET: KPI; 1.97A {Homo sapiens} SCOP: c.1.10.0 PDB: 3s5n_A
Probab=23.10 E-value=1e+02 Score=27.40 Aligned_cols=71 Identities=10% Similarity=0.081 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHhcCCCCCEEEECcCh-HHHHHHHHHhchhhcCCCCCeEEECCcHH----HH--------HHHHhCCCc
Q 023993 44 DDLKKLAADKAVDYVKSGMALGLGTGS-TAAFVVDRIGQLLKTGELRDIVGIPTSKR----TE--------EQAKSLNIP 110 (274)
Q Consensus 44 ~~~K~~iA~~A~~~I~dg~vIgLGsGS-Tv~~l~~~L~~~~~~~~l~~itvVT~S~~----ta--------~~l~~~gi~ 110 (274)
.++|+++.+.+++.+...-.|..|+|+ ++...++ +.+..++-+...+-++|.... +. ..+...++|
T Consensus 66 ~~Er~~v~~~~~~~~~gr~pviaGvg~~~t~~ai~-la~~A~~~Gadavlv~~P~y~~~~~s~~~l~~~f~~ia~a~~lP 144 (307)
T 3s5o_A 66 SSERLEVVSRVRQAMPKNRLLLAGSGCESTQATVE-MTVSMAQVGADAAMVVTPCYYRGRMSSAALIHHYTKVADLSPIP 144 (307)
T ss_dssp HHHHHHHHHHHHHTSCTTSEEEEECCCSSHHHHHH-HHHHHHHTTCSEEEEECCCTTGGGCCHHHHHHHHHHHHHHCSSC
T ss_pred HHHHHHHHHHHHHHcCCCCcEEEecCCCCHHHHHH-HHHHHHHcCCCEEEEcCCCcCCCCCCHHHHHHHHHHHHhhcCCC
Confidence 477888899999999877767777775 3344433 332333323345777776542 11 122345788
Q ss_pred EEEcC
Q 023993 111 LTTLD 115 (274)
Q Consensus 111 vi~l~ 115 (274)
++..+
T Consensus 145 iilYn 149 (307)
T 3s5o_A 145 VVLYS 149 (307)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 87653
No 122
>2yci_X 5-methyltetrahydrofolate corrinoid/iron sulfur PR methyltransferase; 1.78A {Carboxydothermus hydrogenoformans} PDB: 2ycj_A* 2yck_X*
Probab=23.02 E-value=1.3e+02 Score=26.60 Aligned_cols=61 Identities=16% Similarity=0.178 Sum_probs=40.7
Q ss_pred HHHHHHHHhcCCCC-CEEEECcChH-------HHHHHHHHhchhhcCCCCCeEEECCcHHHHHHHHhC--CCcEE
Q 023993 48 KLAADKAVDYVKSG-MALGLGTGST-------AAFVVDRIGQLLKTGELRDIVGIPTSKRTEEQAKSL--NIPLT 112 (274)
Q Consensus 48 ~~iA~~A~~~I~dg-~vIgLGsGST-------v~~l~~~L~~~~~~~~l~~itvVT~S~~ta~~l~~~--gi~vi 112 (274)
..+.+.|.++++.| ++|=||.+|+ +..+++.|.+.. . -.+.+=|....++..+-+. |-.++
T Consensus 34 ~~a~~~a~~~v~~GAdiIDIg~~s~~~eE~~rv~~vi~~l~~~~---~-~pisIDT~~~~v~~aal~a~~Ga~iI 104 (271)
T 2yci_X 34 RPIQEWARRQAEKGAHYLDVNTGPTADDPVRVMEWLVKTIQEVV---D-LPCCLDSTNPDAIEAGLKVHRGHAMI 104 (271)
T ss_dssp HHHHHHHHHHHHTTCSEEEEECCSCSSCHHHHHHHHHHHHHHHC---C-CCEEEECSCHHHHHHHHHHCCSCCEE
T ss_pred HHHHHHHHHHHHCCCCEEEEcCCcCchhHHHHHHHHHHHHHHhC---C-CeEEEeCCCHHHHHHHHHhCCCCCEE
Confidence 34556677888888 6999999884 455555555421 2 2588888888888876544 55544
No 123
>3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium}
Probab=22.72 E-value=1.1e+02 Score=23.33 Aligned_cols=63 Identities=14% Similarity=0.161 Sum_probs=40.9
Q ss_pred CC-EEEECcChHHHHHHHHHhchhhcCCCCCeEEECCcHHHHHH-HHhCCCcEEEcCCC----CcccEEEEccC
Q 023993 61 GM-ALGLGTGSTAAFVVDRIGQLLKTGELRDIVGIPTSKRTEEQ-AKSLNIPLTTLDDH----PSLDLAIDGAD 128 (274)
Q Consensus 61 g~-vIgLGsGSTv~~l~~~L~~~~~~~~l~~itvVT~S~~ta~~-l~~~gi~vi~l~~~----~~iD~afdGaD 128 (274)
++ +..+|+|..-..+++.|.+. +.. ++++.-+...+.. +++.+.++...... ...|+.|....
T Consensus 21 ~~~v~iiG~G~iG~~~a~~l~~~----g~~-v~v~~r~~~~~~~~a~~~~~~~~~~~~~~~~~~~~Divi~at~ 89 (144)
T 3oj0_A 21 GNKILLVGNGMLASEIAPYFSYP----QYK-VTVAGRNIDHVRAFAEKYEYEYVLINDIDSLIKNNDVIITATS 89 (144)
T ss_dssp CCEEEEECCSHHHHHHGGGCCTT----TCE-EEEEESCHHHHHHHHHHHTCEEEECSCHHHHHHTCSEEEECSC
T ss_pred CCEEEEECCCHHHHHHHHHHHhC----CCE-EEEEcCCHHHHHHHHHHhCCceEeecCHHHHhcCCCEEEEeCC
Confidence 65 44579999988888877642 233 7787777766654 45667665554432 35677777553
No 124
>3hn6_A Glucosamine-6-phosphate deaminase; niaid, ssgcid, decode, UW, SBRI, infectious disease, LYME DI non-hodgkin lymphomas, neuroborreliosis; 2.20A {Borrelia burgdorferi}
Probab=22.48 E-value=69 Score=28.55 Aligned_cols=32 Identities=25% Similarity=0.403 Sum_probs=23.4
Q ss_pred CEEEECcChHHHHHHHHHhchhhcCCC--CCeEE
Q 023993 62 MALGLGTGSTAAFVVDRIGQLLKTGEL--RDIVG 93 (274)
Q Consensus 62 ~vIgLGsGSTv~~l~~~L~~~~~~~~l--~~itv 93 (274)
.+|+|-+|||-..+-+.|.+..+++.+ .++++
T Consensus 56 ~~l~LsgGsTP~~~y~~L~~~~~~~~idw~~v~~ 89 (289)
T 3hn6_A 56 FILGLPTGSSPIGMYKNLIELNKNKKISFQNVIT 89 (289)
T ss_dssp EEEEECCSSTTHHHHHHHHHHHHTTSCCCTTEEE
T ss_pred EEEEECCCccHHHHHHHHHHhHhhcCCCchheEE
Confidence 599999999999999999865444433 24544
No 125
>3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A*
Probab=21.87 E-value=2.6e+02 Score=23.70 Aligned_cols=58 Identities=24% Similarity=0.396 Sum_probs=32.9
Q ss_pred CCChHHHHHHHHHHHHhc--CCCCC-EEEECcC--hHHHHHHHHHhchhhcCCCCCeEEECCcHHHHHHHH
Q 023993 40 ALTQDDLKKLAADKAVDY--VKSGM-ALGLGTG--STAAFVVDRIGQLLKTGELRDIVGIPTSKRTEEQAK 105 (274)
Q Consensus 40 ~~~~~~~K~~iA~~A~~~--I~dg~-vIgLGsG--STv~~l~~~L~~~~~~~~l~~itvVT~S~~ta~~l~ 105 (274)
..+.++.........++. +++|+ ++=||+| ..+..+++..+ ..++.|..|......++
T Consensus 50 ~~~l~~a~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~--------~~v~gvD~s~~~~~~a~ 112 (302)
T 3hem_A 50 DMTLEEAQYAKRKLALDKLNLEPGMTLLDIGCGWGSTMRHAVAEYD--------VNVIGLTLSENQYAHDK 112 (302)
T ss_dssp TCCHHHHHHHHHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHHHC--------CEEEEEECCHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHcCCCCcCEEEEeeccCcHHHHHHHHhCC--------CEEEEEECCHHHHHHHH
Confidence 344544444444445544 46775 5555555 55555555432 25999999987665553
No 126
>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*
Probab=21.86 E-value=2.3e+02 Score=20.52 Aligned_cols=47 Identities=11% Similarity=0.212 Sum_probs=33.9
Q ss_pred CCEEEECcChHHHHHHHHHhchhhcCCCCCeEEECCcHHHHHHHHhCCCcEE
Q 023993 61 GMALGLGTGSTAAFVVDRIGQLLKTGELRDIVGIPTSKRTEEQAKSLNIPLT 112 (274)
Q Consensus 61 g~vIgLGsGSTv~~l~~~L~~~~~~~~l~~itvVT~S~~ta~~l~~~gi~vi 112 (274)
..++-+|.|..-..+++.|.+. | .+++++..+......+.+.+..++
T Consensus 7 ~~v~I~G~G~iG~~~a~~l~~~---g--~~v~~~d~~~~~~~~~~~~~~~~~ 53 (144)
T 2hmt_A 7 KQFAVIGLGRFGGSIVKELHRM---G--HEVLAVDINEEKVNAYASYATHAV 53 (144)
T ss_dssp CSEEEECCSHHHHHHHHHHHHT---T--CCCEEEESCHHHHHTTTTTCSEEE
T ss_pred CcEEEECCCHHHHHHHHHHHHC---C--CEEEEEeCCHHHHHHHHHhCCEEE
Confidence 4588999999999999988653 2 368888887766555555565544
No 127
>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9
Probab=21.45 E-value=2.4e+02 Score=20.43 Aligned_cols=46 Identities=20% Similarity=0.264 Sum_probs=33.8
Q ss_pred EEEECcChHHHHHHHHHhchhhcCCCCCeEEECCcHHHHHHHH-hCCCcEEE
Q 023993 63 ALGLGTGSTAAFVVDRIGQLLKTGELRDIVGIPTSKRTEEQAK-SLNIPLTT 113 (274)
Q Consensus 63 vIgLGsGSTv~~l~~~L~~~~~~~~l~~itvVT~S~~ta~~l~-~~gi~vi~ 113 (274)
++-+|.|..-..+++.|.+. | .+++++..+......+. +.++.++.
T Consensus 7 i~IiG~G~iG~~~a~~L~~~---g--~~v~~~d~~~~~~~~~~~~~~~~~~~ 53 (140)
T 1lss_A 7 IIIAGIGRVGYTLAKSLSEK---G--HDIVLIDIDKDICKKASAEIDALVIN 53 (140)
T ss_dssp EEEECCSHHHHHHHHHHHHT---T--CEEEEEESCHHHHHHHHHHCSSEEEE
T ss_pred EEEECCCHHHHHHHHHHHhC---C--CeEEEEECCHHHHHHHHHhcCcEEEE
Confidence 67889999999999988753 2 36899988877666554 45776553
No 128
>3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A
Probab=21.43 E-value=3.7e+02 Score=23.50 Aligned_cols=73 Identities=15% Similarity=0.179 Sum_probs=41.2
Q ss_pred HHHHHh--cCCCCC-EEEECcChHHHHHHHHHhchhhcCCCCCeEEECCcHHHHHHHHhCCCcE-EEcCC----------
Q 023993 51 ADKAVD--YVKSGM-ALGLGTGSTAAFVVDRIGQLLKTGELRDIVGIPTSKRTEEQAKSLNIPL-TTLDD---------- 116 (274)
Q Consensus 51 A~~A~~--~I~dg~-vIgLGsGSTv~~l~~~L~~~~~~~~l~~itvVT~S~~ta~~l~~~gi~v-i~l~~---------- 116 (274)
|..|++ -+++|+ ++-+|+|..=...++..... | ...+.++..+..-...+++.|... +....
T Consensus 155 a~~al~~~~~~~g~~VlV~GaG~vG~~a~qla~~~---G-a~~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~v~~~ 230 (352)
T 3fpc_A 155 GFHGAELANIKLGDTVCVIGIGPVGLMSVAGANHL---G-AGRIFAVGSRKHCCDIALEYGATDIINYKNGDIVEQILKA 230 (352)
T ss_dssp HHHHHHHTTCCTTCCEEEECCSHHHHHHHHHHHTT---T-CSSEEEECCCHHHHHHHHHHTCCEEECGGGSCHHHHHHHH
T ss_pred HHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHc---C-CcEEEEECCCHHHHHHHHHhCCceEEcCCCcCHHHHHHHH
Confidence 344443 357787 55567775545554444321 2 235777777776666778888753 33211
Q ss_pred --CCcccEEEEcc
Q 023993 117 --HPSLDLAIDGA 127 (274)
Q Consensus 117 --~~~iD~afdGa 127 (274)
...+|++||.+
T Consensus 231 t~g~g~D~v~d~~ 243 (352)
T 3fpc_A 231 TDGKGVDKVVIAG 243 (352)
T ss_dssp TTTCCEEEEEECS
T ss_pred cCCCCCCEEEECC
Confidence 12478888854
No 129
>2vp8_A Dihydropteroate synthase 2; RV1207 transferase, folate biosynthesis, antibiotic resistance; 2.64A {Mycobacterium tuberculosis}
Probab=21.22 E-value=1.4e+02 Score=27.17 Aligned_cols=62 Identities=13% Similarity=0.049 Sum_probs=37.2
Q ss_pred HHHHHHHHhcCCCC-CEEEECcChH--------------HHHHHHHHhchhhcCCCCCeEEECCcHHHHHHHHhCCCcEE
Q 023993 48 KLAADKAVDYVKSG-MALGLGTGST--------------AAFVVDRIGQLLKTGELRDIVGIPTSKRTEEQAKSLNIPLT 112 (274)
Q Consensus 48 ~~iA~~A~~~I~dg-~vIgLGsGST--------------v~~l~~~L~~~~~~~~l~~itvVT~S~~ta~~l~~~gi~vi 112 (274)
..+-+.|.+++++| ++|=||+-|| +..+++.|.+.. .. -.|.+=|....++..+-+.|..++
T Consensus 65 ~~a~~~A~~~v~~GAdIIDIGgeSTrPG~~v~~~eEl~Rv~pvI~~l~~~~--~~-vpISIDT~~~~VaeaAl~aGa~iI 141 (318)
T 2vp8_A 65 AAARDAVHRAVADGADVIDVGGVKAGPGERVDVDTEITRLVPFIEWLRGAY--PD-QLISVDTWRAQVAKAACAAGADLI 141 (318)
T ss_dssp HHHHHHHHHHHHTTCSEEEEC----------CHHHHHHHHHHHHHHHHHHS--TT-CEEEEECSCHHHHHHHHHHTCCEE
T ss_pred HHHHHHHHHHHHCCCCEEEECCCcCCCCCCCCHHHHHHHHHHHHHHHHhhC--CC-CeEEEeCCCHHHHHHHHHhCCCEE
Confidence 44566788999998 6999998665 222334333210 01 247788888888887766676654
No 130
>3mw8_A Uroporphyrinogen-III synthase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, lyase; 1.65A {Shewanella amazonensis}
Probab=21.04 E-value=1.4e+02 Score=24.83 Aligned_cols=51 Identities=10% Similarity=0.018 Sum_probs=42.1
Q ss_pred CCCCCEEEECcChHHHHHHHHHhchhhcCCCCCeEEECCcHHHHHHHHhCCCcEEE
Q 023993 58 VKSGMALGLGTGSTAAFVVDRIGQLLKTGELRDIVGIPTSKRTEEQAKSLNIPLTT 113 (274)
Q Consensus 58 I~dg~vIgLGsGSTv~~l~~~L~~~~~~~~l~~itvVT~S~~ta~~l~~~gi~vi~ 113 (274)
+.+-|.|.+-|...+..+.+.+.+. +.++.+.+=...|+..|+++|+....
T Consensus 48 l~~~d~viftS~~aV~~~~~~l~~~-----l~~~~~~aVG~~Ta~~L~~~G~~~~~ 98 (240)
T 3mw8_A 48 LSRADILIFISTSAVSFATPWLKDQ-----WPKATYYAVGDATADALALQGITAER 98 (240)
T ss_dssp HTTCSEEEECSHHHHHHHHHHHTTC-----CCSSEEEESSHHHHHHHHHTTCCCEE
T ss_pred hcCCCEEEEECHHHHHHHHHHHHhh-----CcCCeEEEECHHHHHHHHHcCCCCcc
Confidence 4678999999999999999988632 34678899999999999999986543
No 131
>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9
Probab=20.93 E-value=2.8e+02 Score=21.02 Aligned_cols=49 Identities=14% Similarity=0.089 Sum_probs=34.0
Q ss_pred CCCEEEECcChHHHHHHHHHhchhhcCCCCCeEEECCc-HHHHHHH---HhCCCcEEE
Q 023993 60 SGMALGLGTGSTAAFVVDRIGQLLKTGELRDIVGIPTS-KRTEEQA---KSLNIPLTT 113 (274)
Q Consensus 60 dg~vIgLGsGSTv~~l~~~L~~~~~~~~l~~itvVT~S-~~ta~~l---~~~gi~vi~ 113 (274)
.+.++-+|.|..-..+++.|.+. | .++++|..+ ......+ ...|++++.
T Consensus 3 ~~~vlI~G~G~vG~~la~~L~~~---g--~~V~vid~~~~~~~~~~~~~~~~~~~~i~ 55 (153)
T 1id1_A 3 KDHFIVCGHSILAINTILQLNQR---G--QNVTVISNLPEDDIKQLEQRLGDNADVIP 55 (153)
T ss_dssp CSCEEEECCSHHHHHHHHHHHHT---T--CCEEEEECCCHHHHHHHHHHHCTTCEEEE
T ss_pred CCcEEEECCCHHHHHHHHHHHHC---C--CCEEEEECCChHHHHHHHHhhcCCCeEEE
Confidence 45688899999999999998653 2 479999886 3333223 234677664
No 132
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=20.92 E-value=1.9e+02 Score=26.75 Aligned_cols=57 Identities=18% Similarity=0.274 Sum_probs=30.7
Q ss_pred HHHHHhcCCCCC-EEEE----CcChHH--HHHHHHHhchhhcCCCCCeEEECCcHHHHHHHH-hCCCcE
Q 023993 51 ADKAVDYVKSGM-ALGL----GTGSTA--AFVVDRIGQLLKTGELRDIVGIPTSKRTEEQAK-SLNIPL 111 (274)
Q Consensus 51 A~~A~~~I~dg~-vIgL----GsGSTv--~~l~~~L~~~~~~~~l~~itvVT~S~~ta~~l~-~~gi~v 111 (274)
.......++.+. .+.| |||-|. ..++.+|.. .+. ..+.+++.+-..+..+. ..++..
T Consensus 34 v~~~~~~i~~~~~~~li~G~aGTGKT~ll~~~~~~l~~---~~~-~~il~~a~T~~Aa~~l~~~~~~~~ 98 (459)
T 3upu_A 34 FNIVMKAIKEKKHHVTINGPAGTGATTLTKFIIEALIS---TGE-TGIILAAPTHAAKKILSKLSGKEA 98 (459)
T ss_dssp HHHHHHHHHSSSCEEEEECCTTSCHHHHHHHHHHHHHH---TTC-CCEEEEESSHHHHHHHHHHHSSCE
T ss_pred HHHHHHHHhcCCCEEEEEeCCCCCHHHHHHHHHHHHHh---cCC-ceEEEecCcHHHHHHHHhhhccch
Confidence 333445555444 4444 788664 333444432 222 35888888888777664 335443
No 133
>2ywr_A Phosphoribosylglycinamide formyltransferase; rossmann fold, structural genomics, NPPSFA; 1.77A {Aquifex aeolicus}
Probab=20.48 E-value=1.7e+02 Score=24.68 Aligned_cols=49 Identities=20% Similarity=0.193 Sum_probs=32.1
Q ss_pred EEEE--CcChHHHHHHHHHhchhhcCCC--CCeEEECCcH--HHHHHHHhCCCcEEEcC
Q 023993 63 ALGL--GTGSTAAFVVDRIGQLLKTGEL--RDIVGIPTSK--RTEEQAKSLNIPLTTLD 115 (274)
Q Consensus 63 vIgL--GsGSTv~~l~~~L~~~~~~~~l--~~itvVT~S~--~ta~~l~~~gi~vi~l~ 115 (274)
++++ |+|+....+++.|.+. .+ .-+-|||+.. .....++++||++..+.
T Consensus 4 I~vl~SG~g~~~~~~l~~l~~~----~~~~~i~~Vvs~~~~~~~~~~A~~~gIp~~~~~ 58 (216)
T 2ywr_A 4 IGVLVSGRGSNLQAIIDAIESG----KVNASIELVISDNPKAYAIERCKKHNVECKVIQ 58 (216)
T ss_dssp EEEEECSCCHHHHHHHHHHHTT----SSCEEEEEEEESCTTCHHHHHHHHHTCCEEECC
T ss_pred EEEEEeCCcHHHHHHHHHHHhC----CCCCeEEEEEeCCCChHHHHHHHHcCCCEEEeC
Confidence 5678 8888888888877642 22 1145677743 34456788899987654
No 134
>3d8t_A Uroporphyrinogen-III synthase; heme biosynthesis, lyase; 1.60A {Thermus thermophilus} PDB: 3d8r_A 3d8s_A 3d8n_A
Probab=20.14 E-value=64 Score=28.02 Aligned_cols=53 Identities=9% Similarity=0.110 Sum_probs=39.2
Q ss_pred CCCEEEECcChHHHHHHHHHhchhh-cCCCC-CeEEECCcHHHHHHHHhCCCcEE
Q 023993 60 SGMALGLGTGSTAAFVVDRIGQLLK-TGELR-DIVGIPTSKRTEEQAKSLNIPLT 112 (274)
Q Consensus 60 dg~vIgLGsGSTv~~l~~~L~~~~~-~~~l~-~itvVT~S~~ta~~l~~~gi~vi 112 (274)
+-|.|-+-|++|+..|.+.+.+.-. ...+. ++.+++-+..|+..|++.|++..
T Consensus 208 ~~d~v~FtS~~~v~~~~~~~~~~~~~~~~l~~~~~i~aIG~~TA~al~~~G~~~~ 262 (286)
T 3d8t_A 208 EVDALAFVAAIQVEFLFEGAKDPKALREALNTRVKALAVGRVTADALREWGVKPF 262 (286)
T ss_dssp CCSEEEESSHHHHHHHHHHCSCHHHHHHHHTTTSEEEEESHHHHHHHHHTTCCCS
T ss_pred CCCEEEEECHHHHHHHHHHHHhccchhhHhhcCCEEEEECHHHHHHHHHcCCCce
Confidence 4589999999999999987753100 00123 57899999999999999998643
No 135
>3av3_A Phosphoribosylglycinamide formyltransferase; structural genomics, riken structural genomics/proteomics in RSGI, rossmann fold; HET: MSE; 1.70A {Geobacillus kaustophilus}
Probab=20.07 E-value=1.5e+02 Score=24.89 Aligned_cols=49 Identities=18% Similarity=0.285 Sum_probs=31.9
Q ss_pred EEEECcChHHHHHHHHHhchhhcCCC-CCe-EEECCc--HHHHHHHHhCCCcEEEcC
Q 023993 63 ALGLGTGSTAAFVVDRIGQLLKTGEL-RDI-VGIPTS--KRTEEQAKSLNIPLTTLD 115 (274)
Q Consensus 63 vIgLGsGSTv~~l~~~L~~~~~~~~l-~~i-tvVT~S--~~ta~~l~~~gi~vi~l~ 115 (274)
+++.|+|+....+++.|.+. .+ .++ -|||+. ......++++||++..+.
T Consensus 8 vl~sG~g~~~~~~l~~l~~~----~l~~~I~~Vit~~~~~~v~~~A~~~gIp~~~~~ 60 (212)
T 3av3_A 8 VFASGSGTNFQAIVDAAKRG----DLPARVALLVCDRPGAKVIERAARENVPAFVFS 60 (212)
T ss_dssp EECCSSCHHHHHHHHHHHTT----CCCEEEEEEEESSTTCHHHHHHHHTTCCEEECC
T ss_pred EEEECCcHHHHHHHHHHHhC----CCCCeEEEEEeCCCCcHHHHHHHHcCCCEEEeC
Confidence 35568888888888877542 11 123 466663 345667889999988654
Done!