RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 023993
(274 letters)
>gnl|CDD|215215 PLN02384, PLN02384, ribose-5-phosphate isomerase.
Length = 264
Score = 345 bits (886), Expect = e-121
Identities = 157/238 (65%), Positives = 186/238 (78%), Gaps = 1/238 (0%)
Query: 38 VPALTQDDLKKLAADKAVDYVKSGMALGLGTGSTAAFVVDRIGQLLKTGELRDIVGIPTS 97
LTQD+LKK+AA KAV++V+SGM LGLGTGSTA VDRIG+LL+ G+L++I+GIPTS
Sbjct: 27 PVILTQDELKKIAAYKAVEFVESGMVLGLGTGSTAKHAVDRIGELLRQGKLKNIIGIPTS 86
Query: 98 KRTEEQAKSLNIPLTTLDDHPSLDLAIDGADEVDPELNLVKGRGGALLREKMVEAASKSF 157
K+T EQA SL IPL+ LD HP +DLAIDGADEVDP LNLVKGRGG+LLREKM+E A K F
Sbjct: 87 KKTHEQAVSLGIPLSDLDSHPVVDLAIDGADEVDPNLNLVKGRGGSLLREKMIEGACKKF 146
Query: 158 VVVADESKLVSGLGGSKLAMPVEVVQFCWKFNLVRLQDLFRELGCEAKLREGENG-KPYI 216
VV+ DESKLV +GGS LAMPVEVV FCWKF +LQ LF GC AKLR NG +P++
Sbjct: 147 VVIVDESKLVKHIGGSGLAMPVEVVPFCWKFTAEKLQSLFEYAGCVAKLRTKNNGEEPFV 206
Query: 217 TDNFNYIIDLYFETPIKDGVSAGTEIGKLEGVVEHGLFLDMATAVIIAGKTGVEVKSK 274
TDN NYI+DLYF+ I D A I +L GVVEHG+FLDMAT VI+AG+ GV +K K
Sbjct: 207 TDNGNYIVDLYFKRDIGDLKVASDAILRLAGVVEHGMFLDMATTVIVAGELGVTIKDK 264
>gnl|CDD|238692 cd01398, RPI_A, RPI_A: Ribose 5-phosphate isomerase type A (RPI_A)
subfamily; RPI catalyzes the reversible conversion of
ribose-5-phosphate to ribulose 5-phosphate, the first
step of the non-oxidative branch of the pentose
phosphate pathway. This reaction leads to the conversion
of phosphosugars into glycolysis intermediates, which
are precursors for the synthesis of amino acids,
vitamins, nucleotides, and cell wall components. In
plants, RPI is part of the Calvin cycle as ribulose
5-phosphate is the carbon dioxide receptor in the first
dark reaction of photosynthesis. There are two unrelated
types of RPIs (A and B), which catalyze the same
reaction, at least one type of RPI is present in an
organism. RPI_A is more widely distributed than RPI_B in
bacteria, eukaryotes, and archaea.
Length = 213
Score = 289 bits (742), Expect = 2e-99
Identities = 121/221 (54%), Positives = 156/221 (70%), Gaps = 9/221 (4%)
Query: 46 LKKLAADKAVDYVKSGMALGLGTGSTAAFVVDRIGQLLKTGELRDIVGIPTSKRTEEQAK 105
LK+ AA AVDYV+ GM +GLGTGST A+ ++ +G+ ++ E +IVG+PTS +TEE A+
Sbjct: 1 LKRAAARAAVDYVEDGMVIGLGTGSTVAYFIEALGERVRE-EGLNIVGVPTSFQTEELAR 59
Query: 106 SLNIPLTTLDDHPSLDLAIDGADEVDPELNLVKGRGGALLREKMVEAASKSFVVVADESK 165
L IPLT LD+ P LDLAIDGADEVDP+LNL+KG GGALLREK+V +A+K F+V+ADESK
Sbjct: 60 ELGIPLTDLDEVPRLDLAIDGADEVDPDLNLIKGGGGALLREKIVASAAKKFIVIADESK 119
Query: 166 LVSGLGGSKLAMPVEVVQFCWKFNLVRLQDLFRELGCEAKLREGEN-GKPYITDNFNYII 224
LV LG L PVEVV F W + L+ LG + LREG G P +TDN NYI+
Sbjct: 120 LVERLGEFPL--PVEVVPFAWSYVARELEK----LGGKPVLREGSGKGGPVVTDNGNYIL 173
Query: 225 DLYFETPIKDGVSAGTEIGKLEGVVEHGLFLDMATAVIIAG 265
D++F T I+D + E+ + GVVEHGLFL+MA VI+
Sbjct: 174 DVHFGT-IEDPEALEKELKSIPGVVEHGLFLNMADEVIVGT 213
>gnl|CDD|232786 TIGR00021, rpiA, ribose 5-phosphate isomerase. This model
describes ribose 5-phosphate isomerase, an enzyme of the
non-oxidative branch of the pentose phosphate pathway
[Energy metabolism, Pentose phosphate pathway].
Length = 218
Score = 288 bits (739), Expect = 6e-99
Identities = 122/225 (54%), Positives = 157/225 (69%), Gaps = 7/225 (3%)
Query: 46 LKKLAADKAVDYVKSGMALGLGTGSTAAFVVDRIGQLLKTGELRDIVGIPTSKRTEEQAK 105
LK+ AA+ A +YV+ GM +GLGTGST A+ ++ +G+ +K L DIVG+PTSK+T E A+
Sbjct: 1 LKRAAAEAAAEYVEDGMVVGLGTGSTVAYFIEALGERVKQEGL-DIVGVPTSKQTAELAR 59
Query: 106 SLNIPLTTLDDHPSLDLAIDGADEVDPELNLVKGRGGALLREKMVEAASKSFVVVADESK 165
L IPL++LD+ P LDLAIDGADEVDP L L+KG GGALLREK+V +ASK F+V+ADESK
Sbjct: 60 ELGIPLSSLDEVPELDLAIDGADEVDPNLQLIKGGGGALLREKIVASASKRFIVIADESK 119
Query: 166 LVSGLGGSKLAMPVEVVQFCWKFNLVRLQDLFRELGCEAKLREGENGKPYITDNFNYIID 225
LV LG K +PVEVV F WK +L +LG E LR+G G P +TDN NYI+D
Sbjct: 120 LVDKLG--KFPLPVEVVPFAWKAVARKL----EKLGGEPTLRQGNKGGPVVTDNGNYILD 173
Query: 226 LYFETPIKDGVSAGTEIGKLEGVVEHGLFLDMATAVIIAGKTGVE 270
+F I D + E+ + GVVE GLF+DMA VI+ K GV+
Sbjct: 174 CHFGKIIPDPEALEEELKSIPGVVETGLFIDMADTVIVGTKDGVK 218
>gnl|CDD|234816 PRK00702, PRK00702, ribose-5-phosphate isomerase A; Provisional.
Length = 220
Score = 287 bits (737), Expect = 1e-98
Identities = 109/230 (47%), Positives = 147/230 (63%), Gaps = 12/230 (5%)
Query: 42 TQDDLKKLAADKAVDYVKSGMALGLGTGSTAAFVVDRIGQLLKTGELRDIVGIPTSKRTE 101
TQD+LKK AA+ A +YV+ GM +GLGTGSTAA+ +D +G+ +K G I G+PTS+ +
Sbjct: 2 TQDELKKAAAEAAAEYVEDGMIVGLGTGSTAAYFIDALGERVKEGL--IIGGVPTSEAST 59
Query: 102 EQAKSLNIPLTTLDDHPSLDLAIDGADEVDPELNLVKGRGGALLREKMVEAASKSFVVVA 161
E AK L IPL L++ SLDL +DGADE+DP LNL+KG G AL REK+V AA+K F+ +
Sbjct: 60 ELAKELGIPLFDLNEVDSLDLYVDGADEIDPHLNLIKGGGAALTREKIVAAAAKRFICIV 119
Query: 162 DESKLVSGLGGSKLAMPVEVVQFCWKFNLVRLQDLFRELGCEAKLREGENGKPYITDNFN 221
DESKLV LG L PVEV+ F + +LG + +LR E P +TDN N
Sbjct: 120 DESKLVDVLGKFPL--PVEVIPFARS----AVARELEKLGGQPELRMDE---PVVTDNGN 170
Query: 222 YIIDLYFETPIKDGVSAGTEIGKLEGVVEHGLFLDMATAVIIAGKTGVEV 271
YI+D++F I D + E+ + GVVEHGLF + A V++ GV+
Sbjct: 171 YILDVHFG-RIPDPEALEKELNNIPGVVEHGLFANRADVVLVGTPDGVKT 219
>gnl|CDD|223198 COG0120, RpiA, Ribose 5-phosphate isomerase [Carbohydrate transport
and metabolism].
Length = 227
Score = 262 bits (672), Expect = 1e-88
Identities = 122/235 (51%), Positives = 160/235 (68%), Gaps = 11/235 (4%)
Query: 42 TQDDLKKLAADKAVDYVKSGMALGLGTGSTAAFVVDRIGQLLKTGELRDIVGIPTSKRTE 101
QD+LKK AA A++YVK GM +GLGTGSTAA+ ++ +G+ +K DI G+PTS +TE
Sbjct: 2 DQDELKKAAAKAALEYVKDGMVIGLGTGSTAAYFIEALGRRVKGEL--DIGGVPTSFQTE 59
Query: 102 EQAKSLNIPLTTLDDHPSLDLAIDGADEVDPELNLVKGRGGALLREKMVEAASKSFVVVA 161
E A+ L IP+++L++ SLDLAIDGADEVDP LNL+KG GGALLREK+V +A+K F+V+
Sbjct: 60 ELARELGIPVSSLNEVDSLDLAIDGADEVDPNLNLIKGGGGALLREKIVASAAKRFIVIV 119
Query: 162 DESKLVSGLGGSKLAMPVEVVQFCWKFNLVRLQDLFRELGCEAKLREGENGK-PYITDNF 220
DESKLV LG K +PVEV+ F L +L +LG + LREGE P ITDN
Sbjct: 120 DESKLVEVLG--KFPLPVEVIPFARSAVLRKL----EKLGGKPTLREGEGKDGPVITDNG 173
Query: 221 NYIIDLYFETPIKDGVSAGTEIGKLEGVVEHGLFLDMATAVIIAG-KTGVEVKSK 274
NYI+D++F I+D E+ + GVVE+GLF A VIIAG GV++ K
Sbjct: 174 NYILDVHFG-RIEDPEELEKELNAIPGVVENGLFAGRAADVIIAGTDGGVKILEK 227
>gnl|CDD|218860 pfam06026, Rib_5-P_isom_A, Ribose 5-phosphate isomerase A
(phosphoriboisomerase A). This family consists of
several ribose 5-phosphate isomerase A or
phosphoriboisomerase A (EC:5.3.1.6) from bacteria,
eukaryotes and archaea.
Length = 172
Score = 247 bits (632), Expect = 2e-83
Identities = 105/179 (58%), Positives = 125/179 (69%), Gaps = 8/179 (4%)
Query: 91 IVGIPTSKRTEEQAKSLNIPLTTLDDHPSLDLAIDGADEVDPELNLVKGRGGALLREKMV 150
IVG+PTS +TEE AK L IPL+ LD+ LDLAIDGADEVDP LNL+KG GGALLREK+V
Sbjct: 1 IVGVPTSFQTEELAKELGIPLSDLDEVDELDLAIDGADEVDPNLNLIKGGGGALLREKIV 60
Query: 151 EAASKSFVVVADESKLVSGLGGSKLAMPVEVVQFCWKFNLVRLQDLFRELGCEAKLREGE 210
+A+K F+V+ DESKLV LG K +PVEVV F W + L RL ELG E KLR GE
Sbjct: 61 ASAAKKFIVIVDESKLVDVLG--KFPLPVEVVPFAWSYVLRRL----EELGGEPKLRMGE 114
Query: 211 NGKPYITDNFNYIIDLYFETPIKDGVSAGTEIGKLEGVVEHGLFLDMATAVIIAGKTGV 269
G P +TDN NYI+D++F I+D E+ + GVVEHGLFL MA VI+ K GV
Sbjct: 115 -GGPVVTDNGNYILDVHFG-RIEDPEELEKELKNIPGVVEHGLFLGMADKVIVGTKDGV 171
>gnl|CDD|184433 PRK13978, PRK13978, ribose-5-phosphate isomerase A; Provisional.
Length = 228
Score = 170 bits (432), Expect = 2e-52
Identities = 89/230 (38%), Positives = 131/230 (56%), Gaps = 7/230 (3%)
Query: 45 DLKKLAADKAVDYVKSGMALGLGTGSTAAFVVDRIGQLLKTGELRDIVGIPTSKRTEEQA 104
LK + + + + M LG+GTGST ++ ++ QL+K I G+ TS + A
Sbjct: 6 ALKLMTLNDVLSQINGDMTLGIGTGSTMELLLPQMAQLIKERGYN-ITGVCTSNKIAFLA 64
Query: 105 KSLNIPLTTLDDHPSLDLAIDGADEVDPELNLVKGRGGALLREKMVEAASKSFVVVADES 164
K L I + ++D +DLAIDGADEVDP LN++KG GGAL REK+++ + FVVV DE+
Sbjct: 65 KELGIKICEINDVDHIDLAIDGADEVDPSLNIIKGGGGALFREKVIDEMASRFVVVVDET 124
Query: 165 KLVSGLGGSKLAMPVEVVQFCWKFNLVRLQDLFRELGCEAKLREGENGKPYITDNFNYII 224
K+V LG + +PVEV +F W L +++ + ++ E ++ E +ITDN NYI+
Sbjct: 125 KIVQYLGET-FKLPVEVDKFNWYHILRKIES-YADIKVERRVNE---DVAFITDNGNYIL 179
Query: 225 DLYFETPIKDGVSAGTEIGKLEGVVEHGLFLDMATAVIIAGKTGVEVKSK 274
D I D + L GV E G FLDMA VI+ + GV++ K
Sbjct: 180 DCKLPKGI-DPYKFHEYLIHLTGVFETGYFLDMADQVIVGTQEGVKILEK 228
>gnl|CDD|201239 pfam00455, DeoRC, DeoR C terminal sensor domain. The sensor
domains of the DeoR are catalytically inactive versions
of the ISOCOT fold, but retain the substrate binding
site. DeorC senses diverse sugar derivatives such as
deoxyribose nucleoside (DeoR), tagatose phosphate
(LacR), galactosamine (AgaR), myo-inositol (Bacillus
IolR) and L-ascorbate (UlaR).
Length = 162
Score = 42.5 bits (101), Expect = 4e-05
Identities = 30/146 (20%), Positives = 49/146 (33%), Gaps = 38/146 (26%)
Query: 47 KKLAADKAVDYVKSGMALGLGTGSTAAFVVDRIGQL---------------LKT------ 85
K+ A A ++ G + L G+T + + L
Sbjct: 7 KRRIARAAASLIEDGDTIFLDAGTTTLALARALPDRRNLTVITNSLNIANELSEKPNIEV 66
Query: 86 ----GELRDIVGIPTSKRTEEQAKSLNIPLTTLDDHPSLDLAIDGADEVDPELNLVKG-R 140
GE+R G EE + N+ D A GA+ +D E L
Sbjct: 67 ILLGGEVRPKTGSFVGPLAEEFLRQFNV-----------DKAFIGANGIDLEGGLTTSDE 115
Query: 141 GGALLREKMVEAASKSFVVVADESKL 166
A ++ M+E A + +++AD SK
Sbjct: 116 EEAEVKRAMIERARRV-ILLADSSKF 140
>gnl|CDD|238258 cd00458, SugarP_isomerase, SugarP_isomerase: Sugar Phosphate
Isomerase family; includes type A ribose 5-phosphate
isomerase (RPI_A), glucosamine-6-phosphate (GlcN6P)
deaminase, and 6-phosphogluconolactonase (6PGL). RPI
catalyzes the reversible conversion of
ribose-5-phosphate to ribulose 5-phosphate, the first
step of the non-oxidative branch of the pentose
phosphate pathway. GlcN6P deaminase catalyzes the
reversible conversion of GlcN6P to
D-fructose-6-phosphate (Fru6P) and ammonium, the last
step of the metabolic pathway of
N-acetyl-D-glucosamine-6-phosphate. 6PGL converts
6-phosphoglucono-1,5-lactone to 6-phosphogluconate, the
second step of the oxidative phase of the pentose
phosphate pathway.
Length = 169
Score = 40.4 bits (94), Expect = 3e-04
Identities = 22/41 (53%), Positives = 28/41 (68%)
Query: 59 KSGMALGLGTGSTAAFVVDRIGQLLKTGELRDIVGIPTSKR 99
K M +GLGTGST A+ +G+ LK GE+ DIVG PT +R
Sbjct: 19 KDDMVIGLGTGSTPAYFYKLLGEKLKRGEISDIVGFPTDER 59
>gnl|CDD|224268 COG1349, GlpR, Transcriptional regulators of sugar metabolism
[Transcription / Carbohydrate transport and metabolism].
Length = 253
Score = 32.6 bits (75), Expect = 0.15
Identities = 30/148 (20%), Positives = 48/148 (32%), Gaps = 38/148 (25%)
Query: 45 DLKKLAADKAVDYVKSGMALGLGTGSTAAFVVDRIGQ----------------------- 81
+ K+ A A ++ G + L G+T + +
Sbjct: 76 EEKRAIAKAAATLIEDGDTIFLDAGTTTLALARALPDDNNLTVITNSLNIAAALLEKPNI 135
Query: 82 --LLKTGELRDIVGIPTSKRTEEQAKSLNIPLTTLDDHPSLDLAIDGADEVDPELNLVKG 139
+L G +R G EE + N D A GAD +D E L
Sbjct: 136 EVILLGGTVRKKSGSFVGPLAEEFLRQFNF-----------DKAFIGADGIDLEGGLTTF 184
Query: 140 -RGGALLREKMVEAASKSFVVVADESKL 166
A ++ M+EAA + ++ D SK
Sbjct: 185 NEEEAEVKRAMIEAAREVILLA-DSSKF 211
>gnl|CDD|213698 TIGR02295, HpaD, 3,4-dihydroxyphenylacetate 2,3-dioxygenase. This
enzyme catalyzes the second step in the degradation of
4-hydroxyphenylacetate to succinate and pyruvate.
4-hydroxyphenylacetate arises from the degradation of
tyrosine. The substrate, 3,4-dihydroxyphenylacetate
(homoprotocatechuate) arises from the action of a
hydroxylase on 4-hydroxyphenylacetate. The aromatic ring
is opened by this dioxygenase exo to the 3,4-diol
resulting in 2-hydroxy-5-carboxymethylmuconate
semialdehyde. The enzyme from Bacillus brevis contains
manganese.
Length = 294
Score = 32.0 bits (73), Expect = 0.25
Identities = 14/43 (32%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Query: 190 LVRLQDLFRELGCEAKLRE--GENGKPYITDNFNYIIDLYFET 230
L + D F++LG +L G+ + D F Y I+ YFE
Sbjct: 74 LDKAADFFQKLGHPVRLVRDGGQPEALRVEDPFGYPIEFYFEM 116
>gnl|CDD|233417 TIGR01447, recD, exodeoxyribonuclease V, alpha subunit. This
family describes the exodeoxyribonuclease V alpha
subunit, RecD. RecD is part of a RecBCD complex. A
related family in the Gram-positive bacteria separates
in a phylogenetic tree, has an additional N-terminal
extension of about 200 residues, and is not supported as
a member of a RecBCD complex by neighboring genes. The
related family is consequently described by a different
model [DNA metabolism, DNA replication, recombination,
and repair].
Length = 586
Score = 32.4 bits (74), Expect = 0.27
Identities = 30/110 (27%), Positives = 46/110 (41%), Gaps = 9/110 (8%)
Query: 21 RAPKSLRPRAISIKAQAVPALTQDDLKKLAADKAVDYVKSGMAL---GLGTGST---AAF 74
R +I P L + + +K+A A+ KS +L G GTG T A
Sbjct: 124 LLEARKRTAPSAILENLFPLLNEQNWQKVAVALAL---KSNFSLITGGPGTGKTTTVARL 180
Query: 75 VVDRIGQLLKTGELRDIVGIPTSKRTEEQAKSLNIPLTTLDDHPSLDLAI 124
++ + Q K G+LR + PT K A+SL + L +L A+
Sbjct: 181 LLALVKQSPKQGKLRIALAAPTGKAAARLAESLRKAVKNLAAAEALIAAL 230
>gnl|CDD|234938 PRK01297, PRK01297, ATP-dependent RNA helicase RhlB; Provisional.
Length = 475
Score = 30.3 bits (68), Expect = 1.3
Identities = 17/38 (44%), Positives = 22/38 (57%), Gaps = 8/38 (21%)
Query: 67 GTGSTAAFVVDRIGQLLKT--------GELRDIVGIPT 96
GTG TAAF++ I QLL+T GE R ++ PT
Sbjct: 134 GTGKTAAFLISIINQLLQTPPPKERYMGEPRALIIAPT 171
>gnl|CDD|217027 pfam02424, ApbE, ApbE family. This prokaryotic family of
lipoproteins are related to ApbE from Salmonella
typhimurium. ApbE is involved in thiamine synthesis.
More specifically is may be involved in the conversion
of aminoimidazole ribotide (AIR) to
4-amino-5-hydroxymethyl-2-methyl pyrimidine (HMP).
Length = 255
Score = 29.5 bits (67), Expect = 1.7
Identities = 17/68 (25%), Positives = 26/68 (38%), Gaps = 4/68 (5%)
Query: 17 HFLPRAPKSLRPRAISIKAQAVPALTQDDLKKLAADKAVDYVKSGMALGLGTGSTAAFVV 76
F P + I A A+ + L V + GM L LG G + V
Sbjct: 65 GFGPDKARVPSAAEI---AAALALVGYRKLVLDDEGGTVALKRPGMQLDLG-GIAKGYAV 120
Query: 77 DRIGQLLK 84
DR+ ++L+
Sbjct: 121 DRVAEVLR 128
>gnl|CDD|235767 PRK06277, PRK06277, hydrogenase subunit F; Validated.
Length = 478
Score = 29.6 bits (67), Expect = 1.8
Identities = 17/39 (43%), Positives = 21/39 (53%), Gaps = 3/39 (7%)
Query: 38 VPALTQDDLKKLAADKAVD---YVKSGMALGLGTGSTAA 73
V AL Q D K+L A A+ YV +G+ALG G A
Sbjct: 282 VMALLQTDYKRLLAYHAISQGGYVAAGLALGTPLGIVAG 320
>gnl|CDD|240304 PTZ00171, PTZ00171, acyl carrier protein; Provisional.
Length = 148
Score = 28.1 bits (63), Expect = 3.1
Identities = 12/45 (26%), Positives = 20/45 (44%), Gaps = 1/45 (2%)
Query: 97 SKRTEEQAKSLNIPLTTLDDHPSLDLAIDGADEVDPELNLVKGRG 141
S ++++ S LT + +D A ++ PE N VK G
Sbjct: 58 SSKSKQYLLSKEDVLTRVKKVVKNFEKVD-ASKITPESNFVKDLG 101
>gnl|CDD|240114 cd04801, CBS_pair_M50_like, This cd contains two tandem repeats of
the cystathionine beta-synthase (CBS pair) domains in
association with the metalloprotease peptidase M50. CBS
is a small domain originally identified in cystathionine
beta-synthase and subsequently found in a wide range of
different proteins. CBS domains usually come in tandem
repeats, which associate to form a so-called Bateman
domain or a CBS pair which is reflected in this model.
The interface between the two CBS domains forms a cleft
that is a potential ligand binding site. The CBS pair
coexists with a variety of other functional domains. It
has been proposed that the CBS domain may play a
regulatory role, although its exact function is unknown.
Length = 114
Score = 27.2 bits (61), Expect = 4.3
Identities = 14/50 (28%), Positives = 21/50 (42%)
Query: 66 LGTGSTAAFVVDRIGQLLKTGELRDIVGIPTSKRTEEQAKSLNIPLTTLD 115
LG+ VVD G+ + L D+ IPTS+ + + P L
Sbjct: 21 LGSNQRRFVVVDNEGRYVGIISLADLRAIPTSQWAQTTVIQVMTPAAKLV 70
>gnl|CDD|215519 PLN02960, PLN02960, alpha-amylase.
Length = 897
Score = 28.6 bits (64), Expect = 4.7
Identities = 10/23 (43%), Positives = 12/23 (52%)
Query: 203 EAKLREGENGKPYITDNFNYIID 225
E KLREGE +NY+ D
Sbjct: 176 EDKLREGEEPDELYFQEYNYVDD 198
>gnl|CDD|238561 cd01141, TroA_d, Periplasmic binding protein TroA_d. These
proteins are predicted to function as initial receptors
in the ABC metal ion uptake in eubacteria and archaea.
They belong to the TroA superfamily of helical backbone
metal receptor proteins that share a distinct fold and
ligand binding mechanism. A typical TroA protein is
comprised of two globular subdomains connected by a
single helix and can bind their ligands in the cleft
between these domains.
Length = 186
Score = 27.4 bits (61), Expect = 7.4
Identities = 14/86 (16%), Positives = 28/86 (32%), Gaps = 2/86 (2%)
Query: 79 IGQLLKTGELRDIVGIPTSKRTEEQAKSLNIPLTTLDDHPSLDLAIDGADEVDPELNLVK 138
+ LL + IVG+ S + SL+ ++ + P+L ++
Sbjct: 19 VDLLLALDKADKIVGVSASAYDLNTPAVKERIDIQVGPTGSLN--VELIVALKPDLVILY 76
Query: 139 GRGGALLREKMVEAASKSFVVVADES 164
G A +E + V +
Sbjct: 77 GGFQAQTILDKLEQLGIPVLYVNEYP 102
>gnl|CDD|220159 pfam09269, DUF1967, Domain of unknown function (DUF1967). Members
of this family contain a four-stranded beta sheet and
three alpha helices flanked by an additional beta
strand. They are predominantly found in the bacterial
GTP-binding protein Obg, and are still functionally
uncharacterized.
Length = 69
Score = 25.5 bits (57), Expect = 7.9
Identities = 7/20 (35%), Positives = 12/20 (60%)
Query: 189 NLVRLQDLFRELGCEAKLRE 208
+L R + ++LG E LR+
Sbjct: 32 SLRRFARILKKLGVEDALRK 51
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.317 0.135 0.379
Gapped
Lambda K H
0.267 0.0869 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 14,063,744
Number of extensions: 1390011
Number of successful extensions: 1491
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1463
Number of HSP's successfully gapped: 38
Length of query: 274
Length of database: 10,937,602
Length adjustment: 95
Effective length of query: 179
Effective length of database: 6,723,972
Effective search space: 1203590988
Effective search space used: 1203590988
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 58 (25.9 bits)