RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 023993
(274 letters)
>d1lk5a1 c.124.1.4 (A:1-130,A:211-229) D-ribose-5-phosphate
isomerase (RpiA), catalytic domain {Archaeon Pyrococcus
horikoshii [TaxId: 53953]}
Length = 149
Score = 130 bits (327), Expect = 1e-38
Identities = 63/154 (40%), Positives = 102/154 (66%), Gaps = 6/154 (3%)
Query: 41 LTQDDLKKLAADKAVDYVKSGMALGLGTGSTAAFVVDRIGQLLKTGELRDIVGIPTSKRT 100
+ +++KK+AA +A+ +++ M +GLGTGST A+ + +G+ LK GE+ DIVG+PTS +
Sbjct: 1 MNVEEMKKIAAKEALKFIEDDMVIGLGTGSTTAYFIKLLGEKLKRGEISDIVGVPTSYQA 60
Query: 101 EEQAKSLNIPLTTLDDHPSLDLAIDGADEVDPELNLVKGRGGALLREKMVEAASKSFVVV 160
+ A +IP+ +LD ++D+A+DGADEVDP LNL+KGRG AL EK++E + +F+V+
Sbjct: 61 KLLAIEHDIPIASLDQVDAIDVAVDGADEVDPNLNLIKGRGAALTMEKIIEYRAGTFIVL 120
Query: 161 ADESKLVSGLGGSKLAMPVEVVQFCWKFNLVRLQ 194
DE KLV L ++V + + +L+
Sbjct: 121 VDERKLVDYLD------IADIVIVGTREGVKKLE 148
>d1o8ba1 c.124.1.4 (A:23-126,A:199-218) D-ribose-5-phosphate
isomerase (RpiA), catalytic domain {Escherichia coli
[TaxId: 562]}
Length = 124
Score = 121 bits (304), Expect = 2e-35
Identities = 40/124 (32%), Positives = 70/124 (56%), Gaps = 4/124 (3%)
Query: 64 LGLGTGSTAAFVVDRIGQLLKTGELRDIVGIPTSKRTEEQAKSLNIPLTTLDDHPSLDLA 123
+G+GTGSTAA +D +G + + + + +S + E+ KSL I + L++ SL +
Sbjct: 2 VGVGTGSTAAHFIDALGTM----KGQIEGAVSSSDASTEKLKSLGIHVFDLNEVDSLGIY 57
Query: 124 IDGADEVDPELNLVKGRGGALLREKMVEAASKSFVVVADESKLVSGLGGSKLAMPVEVVQ 183
+DGADE++ + ++KG G AL REK++ + ++ F+ +AD SK V L + +
Sbjct: 58 VDGADEINGHMQMIKGGGAALTREKIIASVAEKFICIADASKQVDILANRGADVALIGTP 117
Query: 184 FCWK 187
K
Sbjct: 118 DGVK 121
>d1uj4a1 c.124.1.4 (A:3-131,A:206-227) D-ribose-5-phosphate
isomerase (RpiA), catalytic domain {Thermus thermophilus
[TaxId: 274]}
Length = 151
Score = 114 bits (287), Expect = 1e-32
Identities = 67/145 (46%), Positives = 89/145 (61%), Gaps = 2/145 (1%)
Query: 44 DDLKKLAADKAVDYVKSGMALGLGTGSTAAFVVDRIGQLLKTGELRDIVGIPTSKRTEEQ 103
+ KK AA A+ YV+ GM +GLGTGSTA + V + + L+ GEL+ +VG+PTS+ TEE
Sbjct: 4 ESYKKEAAHAAIAYVQDGMVVGLGTGSTARYAVLELARRLREGELKGVVGVPTSRATEEL 63
Query: 104 AKSLNIPLTTLDDHPSLDLAIDGADEVDPELNLVKGRGGALLREKMVEAASKSFVVVADE 163
AK IP +DLAIDGADE+ P L L+KG GGALLREK+VE +K F+V+AD
Sbjct: 64 AKREGIP-LVDLPPEGVDLAIDGADEIAPGLALIKGMGGALLREKIVERVAKEFIVIADH 122
Query: 164 SKLVSGLGGS-KLAMPVEVVQFCWK 187
+K V L + F +
Sbjct: 123 TKKVPVLLFVGMATRALVAGPFGVE 147
>d1m0sa1 c.124.1.4 (A:1-126,A:199-219) D-ribose-5-phosphate
isomerase (RpiA), catalytic domain {Haemophilus
influenzae [TaxId: 727]}
Length = 147
Score = 108 bits (271), Expect = 3e-30
Identities = 50/146 (34%), Positives = 81/146 (55%), Gaps = 7/146 (4%)
Query: 41 LTQDDLKKLAADKAVDYVKSGMALGLGTGSTAAFVVDRIGQLLKTGELRDIVGIPTSKRT 100
+ Q ++KKLAA A+ YVK+ +G+G+GST ++ +G + + + SK +
Sbjct: 1 MNQLEMKKLAAQAALQYVKADRIVGVGSGSTVNCFIEALGT----IKDKIQGAVAASKES 56
Query: 101 EEQAKSLNIPLTTLDDHPSLDLAIDGADEVDPELNLVKGRGGALLREKMVEAASKSFVVV 160
EE + I + +D SLD+ +DGADE++P+ ++KG G AL REK+V A +K F+ +
Sbjct: 57 EELLRKQGIEVFNANDVSSLDIYVDGADEINPQKMMIKGGGAALTREKIVAALAKKFICI 116
Query: 161 ADESKLVSGLGGSKLAMPVEVVQFCW 186
D SK V L + +VV
Sbjct: 117 VDSSKQVDVLFALR---GADVVIVGT 139
>d1lk5a2 d.58.40.1 (A:131-210) D-ribose-5-phosphate isomerase
(RpiA), lid domain {Archaeon Pyrococcus horikoshii
[TaxId: 53953]}
Length = 80
Score = 72.5 bits (178), Expect = 2e-17
Identities = 30/83 (36%), Positives = 44/83 (53%), Gaps = 6/83 (7%)
Query: 173 SKLAMPVEVVQFCWKFNLVRLQDLFRELGCEAKLREGENG-KPYITDNFNYIIDLYFETP 231
K+ +P+EV+ WK + L +A+LR G N P ITDN N+IID F
Sbjct: 2 QKMPVPIEVIPQAWKAIIEELS----IFNAKAELRMGVNKDGPVITDNGNFIIDAKFP-R 56
Query: 232 IKDGVSAGTEIGKLEGVVEHGLF 254
I D + E+ + GV+E+G+F
Sbjct: 57 IDDPLDMEIELNTIPGVIENGIF 79
>d1m0sa2 d.58.40.1 (A:127-198) D-ribose-5-phosphate isomerase
(RpiA), lid domain {Haemophilus influenzae [TaxId: 727]}
Length = 72
Score = 71.6 bits (176), Expect = 5e-17
Identities = 24/82 (29%), Positives = 37/82 (45%), Gaps = 10/82 (12%)
Query: 172 GSKLAMPVEVVQFCWKFNLVRLQDLFRELGCEAKLREGENGKPYITDNFNYIIDLYFETP 231
GS +PVEV+ +L LG + RE +TDN N I+D++
Sbjct: 1 GSTFPLPVEVIPMARSQVGRKL----AALGGSPEYRE-----GVVTDNGNVILDVHNF-S 50
Query: 232 IKDGVSAGTEIGKLEGVVEHGL 253
I + V E+ + GVV +G+
Sbjct: 51 ILNPVEIEKELNNVAGVVTNGI 72
>d1o8ba2 d.58.40.1 (A:127-198) D-ribose-5-phosphate isomerase
(RpiA), lid domain {Escherichia coli [TaxId: 562]}
Length = 72
Score = 64.7 bits (158), Expect = 2e-14
Identities = 24/81 (29%), Positives = 37/81 (45%), Gaps = 10/81 (12%)
Query: 174 KLAMPVEVVQFCWKFNLVRLQDLFRELGCEAKLREGENGKPYITDNFNYIIDLYFETPIK 233
K +PVEV+ +L +LG + R+ +TDN N I+D++ I
Sbjct: 2 KFPLPVEVIPMARSAVARQL----VKLGGRPEYRQ-----GVVTDNGNVILDVHGM-EIL 51
Query: 234 DGVSAGTEIGKLEGVVEHGLF 254
D ++ I + GVV GLF
Sbjct: 52 DPIAMENAINAIPGVVTVGLF 72
>d1uj4a2 d.58.40.1 (A:132-205) D-ribose-5-phosphate isomerase
(RpiA), lid domain {Thermus thermophilus [TaxId: 274]}
Length = 74
Score = 62.5 bits (152), Expect = 1e-13
Identities = 25/79 (31%), Positives = 39/79 (49%), Gaps = 6/79 (7%)
Query: 174 KLAMPVEVVQFCWKFNLVRLQDLFRELGCEAKLREGENGKPYITDNFNYIIDLYFETPIK 233
+ +PVE+V F ++ L + +LG E +LR + Y TD + I D F PI
Sbjct: 2 RGPVPVEIVPFGYRATLKAI----ADLGGEPELRMD-GDEFYFTDGGHLIADCRFG-PIG 55
Query: 234 DGVSAGTEIGKLEGVVEHG 252
D + + ++ GVVE G
Sbjct: 56 DPLGLHRALLEIPGVVETG 74
>d3efba1 c.124.1.8 (A:11-265) Sor-operon regulator SorC {Shigella
flexneri [TaxId: 623]}
Length = 255
Score = 30.4 bits (68), Expect = 0.22
Identities = 7/50 (14%), Positives = 18/50 (36%)
Query: 39 PALTQDDLKKLAADKAVDYVKSGMALGLGTGSTAAFVVDRIGQLLKTGEL 88
+ A ++ G +G G + +V+ + Q ++ +L
Sbjct: 28 EETQLAMMGLHGAQLLDRLLEPGDIVGFSWGRAVSALVENLPQAGQSRQL 77
>d2gnpa1 c.124.1.8 (A:56-317) Transcriptional regulator SP0247
{Streptococcus pneumoniae [TaxId: 1313]}
Length = 262
Score = 29.6 bits (66), Expect = 0.41
Identities = 9/44 (20%), Positives = 20/44 (45%)
Query: 39 PALTQDDLKKLAADKAVDYVKSGMALGLGTGSTAAFVVDRIGQL 82
P + + + ++AA + + M +G G + + +VD I
Sbjct: 33 PTILSERISQVAAGVLRNLIDDNMKIGFSWGKSLSNLVDLIHSK 76
>d2fdbm1 b.42.1.1 (M:34-180) Fibroblast growth factor 8, FGF8 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 147
Score = 27.5 bits (61), Expect = 1.0
Identities = 6/16 (37%), Positives = 8/16 (50%)
Query: 9 TLHHSTSAHFLPRAPK 24
T H HF+ R P+
Sbjct: 132 TRQHQREVHFMKRLPR 147
>d2okga1 c.124.1.8 (A:89-338) Central glycolytic gene regulator
CggR {Bacillus subtilis [TaxId: 1423]}
Length = 250
Score = 27.3 bits (60), Expect = 2.0
Identities = 7/51 (13%), Positives = 16/51 (31%)
Query: 39 PALTQDDLKKLAADKAVDYVKSGMALGLGTGSTAAFVVDRIGQLLKTGELR 89
+ ++ + A + + G+T V + + K EL
Sbjct: 32 SPWVKKEMGRAAVACMKKRFSGKNIVAVTGGTTIEAVAEMMTPDSKNRELL 82
>d1w8ia_ c.120.1.1 (A:) Hypothetical protein AF1683 {Archaeoglobus
fulgidus [TaxId: 2234]}
Length = 155
Score = 26.6 bits (58), Expect = 2.2
Identities = 13/48 (27%), Positives = 20/48 (41%), Gaps = 2/48 (4%)
Query: 104 AKSLNIPLTTLDDHPSLDLAIDGADEVDPELNLVKGRGGALLREKMVE 151
A+ L + L + D L G D + R A+LREK ++
Sbjct: 110 AEELKLKLISYDSR--FSLPTIGRDYWKSLDESERKRISAILREKGID 155
>d1iznb_ e.43.1.2 (B:) Capz beta-1 subunit {Chicken (Gallus gallus)
[TaxId: 9031]}
Length = 270
Score = 27.0 bits (60), Expect = 2.3
Identities = 22/75 (29%), Positives = 31/75 (41%), Gaps = 18/75 (24%)
Query: 189 NLVRLQDLFRELGCEAKL----------REGENGKPYITDNFNYIIDLY-------FETP 231
NL L DL L CE L R+ GK Y+ ++N D Y ++ P
Sbjct: 23 NLSDLIDLVPSL-CEDLLSSVDQPLKIARDKVVGKDYLLCDYNRDGDSYRSPWSNKYDPP 81
Query: 232 IKDGVSAGTEIGKLE 246
++DG + KLE
Sbjct: 82 LEDGAMPSARLRKLE 96
>d1r59o1 c.55.1.4 (O:5-256) Glycerol kinase {Enterococcus
casseliflavus [TaxId: 37734]}
Length = 252
Score = 26.7 bits (58), Expect = 3.1
Identities = 11/32 (34%), Positives = 19/32 (59%), Gaps = 3/32 (9%)
Query: 56 DYVKSGMALGLGTGSTAAFVVDRIGQLLKTGE 87
+YV MA+ GT S+ A + DR G+ + + +
Sbjct: 1 NYV---MAIDQGTTSSRAIIFDRNGKKIGSSQ 29
>d1udxa3 d.242.1.1 (A:341-416) Obg GTP-binding protein C-terminal
domain {Thermus thermophilus [TaxId: 274]}
Length = 76
Score = 24.9 bits (55), Expect = 3.8
Identities = 9/20 (45%), Positives = 11/20 (55%)
Query: 189 NLVRLQDLFRELGCEAKLRE 208
LQ++FR G EA LR
Sbjct: 35 AAGYLQEVFRRQGVEAALRA 54
>d2qlva1 d.129.6.2 (A:460-630) Carbon catabolite-derepressing
protein kinase SNF1 {Saccharomyces cerevisiae [TaxId:
4932]}
Length = 171
Score = 25.7 bits (56), Expect = 5.0
Identities = 10/52 (19%), Positives = 19/52 (36%), Gaps = 3/52 (5%)
Query: 215 YITDNFNYIIDLYF---ETPIKDGVSAGTEIGKLEGVVEHGLFLDMATAVII 263
+ + NY++D F E+ D + FL + T +I+
Sbjct: 114 FQIETNNYLVDFKFDGWESSYGDDTTVSNISEDEMSTFSAYPFLHLTTKLIM 165
>d1pwaa_ b.42.1.1 (A:) Fibroblast growth factor-19 (FGF19) {Human
(Homo sapiens) [TaxId: 9606]}
Length = 136
Score = 25.2 bits (55), Expect = 5.3
Identities = 5/16 (31%), Positives = 6/16 (37%)
Query: 9 TLHHSTSAHFLPRAPK 24
+HFLP P
Sbjct: 116 NRGFLPLSHFLPMLPM 131
>d2qrda1 d.129.6.2 (A:450-576) Snf1-like protein kinase ssp2
{Schizosaccharomyces pombe [TaxId: 4896]}
Length = 127
Score = 25.2 bits (55), Expect = 5.6
Identities = 5/52 (9%), Positives = 16/52 (30%), Gaps = 5/52 (9%)
Query: 215 YITDNFNYIIDLYF---ETPIKDGVSAGTEIGKLEGVVEHGLFLDMATAVII 263
Y +++D+ + ++ + FLD+ ++
Sbjct: 73 YEVMPGCFMLDVKSNGYKDIYSHPERTADH--GMDDLKSSFPFLDLCAMLVC 122
>d1fsfa_ c.124.1.1 (A:) Glucosamine 6-phosphate
deaminase/isomerase NagB {Escherichia coli [TaxId:
562]}
Length = 266
Score = 25.1 bits (54), Expect = 8.5
Identities = 13/54 (24%), Positives = 23/54 (42%), Gaps = 7/54 (12%)
Query: 42 TQDDLKKLAADKAVDYVKSGMA-------LGLGTGSTAAFVVDRIGQLLKTGEL 88
T + + K AA V+ + + LGL TG T + ++ K G++
Sbjct: 8 TAEQVGKWAARHIVNRINAFKPTADRPFVLGLPTGGTPMTTYKALVEMHKAGQV 61
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.317 0.135 0.379
Gapped
Lambda K H
0.267 0.0553 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 974,145
Number of extensions: 45304
Number of successful extensions: 170
Number of sequences better than 10.0: 1
Number of HSP's gapped: 157
Number of HSP's successfully gapped: 23
Length of query: 274
Length of database: 2,407,596
Length adjustment: 84
Effective length of query: 190
Effective length of database: 1,254,276
Effective search space: 238312440
Effective search space used: 238312440
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (24.2 bits)