BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 023994
(274 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4FMM|A Chain A, Dimeric Sec14 Family Homolog 3 From Saccharomyces
Cerevisiae Presents Some Novel Features Of Structure
That Lead To A Surprising "dimer- Monomer" State Change
Induced By Substrate Binding
pdb|4FMM|B Chain B, Dimeric Sec14 Family Homolog 3 From Saccharomyces
Cerevisiae Presents Some Novel Features Of Structure
That Lead To A Surprising "dimer- Monomer" State Change
Induced By Substrate Binding
Length = 360
Score = 89.7 bits (221), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 59/212 (27%), Positives = 114/212 (53%), Gaps = 25/212 (11%)
Query: 5 SVKWRLEY--------KPEKIVWEDVAREAETGKLYRANFCDKLGRPVLIMRPGFQNSSS 56
++ WR E+ +KI + VA E E+GK + + RP+L ++PG QN+ +
Sbjct: 111 TLAWRREFGISHLGEEHGDKITADLVAVENESGKQVILGYEND-ARPILYLKPGRQNTKT 169
Query: 57 TEGQIKYLVYCMENAIMNLNPDREQMVWLIDFQGW-----TMGSVSVK---VTRETANVL 108
+ Q+++LV+ +E I + ++ + LIDF+ + G+ + V +E ++L
Sbjct: 170 SHRQVQHLVFMLERVIDFMPAGQDSLALLIDFKDYPDVPKVPGNSKIPPIGVGKEVLHIL 229
Query: 109 QNHYPERLGLAILYNPPKVFESFWTVVKPFLEPKTYKKVRFAYSNDPQSQKIMEALFDIN 168
Q HYPERLG A+L N P + +F ++ PF++P T +K+ F ++P + + + N
Sbjct: 230 QTHYPERLGKALLTNIPWLAWTFLKLIHPFIDPLTREKLVF---DEPFVKYVPK-----N 281
Query: 169 KLDSSFGGRSRVGFDYEAFGQLMRADDKKKSD 200
+LDS +GG + ++++ + + ++K D
Sbjct: 282 ELDSLYGGDLKFKYNHDVYWPALVETAREKRD 313
>pdb|1AUA|A Chain A, Phosphatidylinositol Transfer Protein Sec14p From
Saccharomyces Cerevisiae
Length = 296
Score = 57.4 bits (137), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 56/199 (28%), Positives = 85/199 (42%), Gaps = 22/199 (11%)
Query: 1 MLVESVKWRLEYKPEKIVWEDVAREAE-TGKLYRANF--CDKLGRPVLIMRPGFQN---- 53
M KWR +Y + I+ + E K Y + DK GRPV G N
Sbjct: 72 MFENCEKWRKDYGTDTILQDFHYDEKPLIAKFYPQYYHKTDKDGRPVYFEELGAVNLHEM 131
Query: 54 --SSSTEGQIKYLVYCMENAIMNLNPD--------REQMVWLIDFQGWTMGSVS--VKVT 101
+S E +K LV+ E+ + P E ++D +G ++ S +
Sbjct: 132 NKVTSEERMLKNLVWEYESVVQYRLPACSRAAGHLVETSCTIMDLKGISISSAYSVMSYV 191
Query: 102 RETANVLQNHYPERLGLAILYNPPKVFESFWTVVKPFLEPKTYKKVRFAYSNDPQSQKIM 161
RE + + QN+YPER+G + N P F + + + KPFL+P T K+ S+ QK +
Sbjct: 192 REASYISQNYYPERMGKFYIINAPFGFSTAFRLFKPFLDPVTVSKIFILGSS---YQKEL 248
Query: 162 EALFDINKLDSSFGGRSRV 180
L FGG+S V
Sbjct: 249 LKQIPAENLPVKFGGKSEV 267
>pdb|3Q8G|A Chain A, Resurrection Of A Functional Phosphatidylinositol Transfer
Protein From A Pseudo-Sec14 Scaffold By Directed
Evolution
Length = 320
Score = 51.2 bits (121), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 54/204 (26%), Positives = 89/204 (43%), Gaps = 30/204 (14%)
Query: 1 MLVESVKWRLEYKPEKIVWEDVA--REAE------TGKLYRANF--CDKLGRPVLIMRPG 50
M VE+ +WR EY I+ ED +EAE K+Y + DK GRP+ G
Sbjct: 81 MFVETERWREEYGANTII-EDYENNKEAEDKERIKLAKMYPQYYHHVDKDGRPLYFAELG 139
Query: 51 FQN-----SSSTEGQIK---------YLVYCMENAIMNLNPDREQMVWLIDFQGWTMGSV 96
N +TE Q+ + Y + E ++D +G ++ +
Sbjct: 140 GINLKKMYKITTEKQMLRNLVKEYELFATYRVPACSRRAGYLIETSCTVLDLKGISLSNA 199
Query: 97 S--VKVTRETANVLQNHYPERLGLAILYNPPKVFESFWTVVKPFLEPKTYKKVRFAYSND 154
+ ++ A++ QN+YPER+G + + P F + + +VKPFL+P T K+ S+
Sbjct: 200 YHVLSYIKDVADISQNYYPERMGKFYIIHSPFGFSTMFKMVKPFLDPVTVSKIFILGSS- 258
Query: 155 PQSQKIMEALFDINKLDSSFGGRS 178
+K + I L +GG S
Sbjct: 259 --YKKELLKQIPIENLPVKYGGTS 280
>pdb|3B74|A Chain A, Crystal Structure Of Yeast Sec14 Homolog Sfh1 In Complex
With Phosphatidylethanolamine
pdb|3B7N|A Chain A, Crystal Structure Of Yeast Sec14 Homolog Sfh1 In Complex
With Phosphatidylinositol
pdb|3B7Q|A Chain A, Crystal Structure Of Yeast Sec14 Homolog Sfh1 In Complex
With Phosphatidylcholine
pdb|3B7Q|B Chain B, Crystal Structure Of Yeast Sec14 Homolog Sfh1 In Complex
With Phosphatidylcholine
pdb|3B7Z|A Chain A, Crystal Structure Of Yeast Sec14 Homolog Sfh1 In Complex
With Phosphatidylcholine Or Phosphatidylinositol
Length = 320
Score = 50.8 bits (120), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 54/204 (26%), Positives = 89/204 (43%), Gaps = 30/204 (14%)
Query: 1 MLVESVKWRLEYKPEKIVWEDVA--REAE------TGKLYRANF--CDKLGRPVLIMRPG 50
M VE+ +WR EY I+ ED +EAE K+Y + DK GRP+ G
Sbjct: 81 MFVETERWREEYGANTII-EDYENNKEAEDKERIKLAKMYPQYYHHVDKDGRPLYFEELG 139
Query: 51 FQN-----SSSTEGQIK---------YLVYCMENAIMNLNPDREQMVWLIDFQGWTMGSV 96
N +TE Q+ + Y + E ++D +G ++ +
Sbjct: 140 GINLKKMYKITTEKQMLRNLVKEYELFATYRVPACSRRAGYLIETSCTVLDLKGISLSNA 199
Query: 97 S--VKVTRETANVLQNHYPERLGLAILYNPPKVFESFWTVVKPFLEPKTYKKVRFAYSND 154
+ ++ A++ QN+YPER+G + + P F + + +VKPFL+P T K+ S+
Sbjct: 200 YHVLSYIKDVADISQNYYPERMGKFYIIHSPFGFSTMFKMVKPFLDPVTVSKIFILGSS- 258
Query: 155 PQSQKIMEALFDINKLDSSFGGRS 178
+K + I L +GG S
Sbjct: 259 --YKKELLKQIPIENLPVKYGGTS 280
>pdb|3HY5|A Chain A, Crystal Structure Of Cralbp
Length = 316
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 54/190 (28%), Positives = 89/190 (46%), Gaps = 25/190 (13%)
Query: 1 MLVESVKWRLEYKPEKIVWEDVAREA-----ETGKLYRANFCDKLGRPVLIMRPGFQNSS 55
+L V +RL+Y PE +++ ++ EA E G + DK GR V++ +N
Sbjct: 112 LLRGYVNFRLQY-PE--LFDSLSPEAVRCTIEAGYPGVLSSRDKYGRVVMLF--NIENWQ 166
Query: 56 STEGQIKYLV--YC--MENAIMNLNPDREQMVWLIDFQGWTM---GSVSVKVTRETANVL 108
S E ++ YC +E + N + +F+G+TM S+ R+ ++L
Sbjct: 167 SQEITFDEILQAYCFILEKLLENEETQINGFCIIENFKGFTMQQAASLRTSDLRKMVDML 226
Query: 109 QNHYPERLGLAILYNPPKVFESFWTVVKPFLEPKTYKKVRFAYSNDPQS--QKIMEALFD 166
Q+ +P R + P F + + VVKPFL+ K ++V F + +D Q+I D
Sbjct: 227 QDSFPARFKAIHFIHQPWYFTTTYNVVKPFLKSKLLERV-FVHGDDLSGFYQEI-----D 280
Query: 167 INKLDSSFGG 176
N L S FGG
Sbjct: 281 ENILPSDFGG 290
>pdb|1OIP|A Chain A, The Molecular Basis Of Vitamin E Retention: Structure Of
Human Alpha-tocopherol Transfer Protein
pdb|1OIZ|A Chain A, The Molecular Basis Of Vitamin E Retention: Structure Of
Human Alpha-Tocopherol Transfer Protein
pdb|1OIZ|B Chain B, The Molecular Basis Of Vitamin E Retention: Structure Of
Human Alpha-Tocopherol Transfer Protein
Length = 278
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/111 (24%), Positives = 55/111 (49%), Gaps = 7/111 (6%)
Query: 69 ENAIMNLNPDREQMVWLIDFQGWTMG---SVSVKVTRETANVLQNHYPERLGLAILYNPP 125
E + + R + + D +GW ++ V ++ A VL + +P ++ L N P
Sbjct: 141 ELIVQEVETQRNGIKAIFDLEGWQFSHAFQITPSVAKKIAAVLTDSFPLKVRGIHLINEP 200
Query: 126 KVFESFWTVVKPFLEPKTYKKVRFAYSNDPQSQKIMEALFDINKLDSSFGG 176
+F + ++++KPFL K +++ +N QS +++ DI L+ +GG
Sbjct: 201 VIFHAVFSMIKPFLTEKIKERIHMHGNNYKQS--LLQHFPDILPLE--YGG 247
>pdb|1R5L|A Chain A, Crystal Structure Of Human Alpha-tocopherol Transfer
Protein Bound To Its Ligand
Length = 262
Score = 40.8 bits (94), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 27/111 (24%), Positives = 54/111 (48%), Gaps = 7/111 (6%)
Query: 69 ENAIMNLNPDREQMVWLIDFQGWTMGS---VSVKVTRETANVLQNHYPERLGLAILYNPP 125
E + + R + + D +GW ++ V ++ A VL + +P ++ L N P
Sbjct: 125 ELIVQEVETQRNGIKAIFDLEGWQFSHAFQITPSVAKKIAAVLTDSFPLKVRGIHLINEP 184
Query: 126 KVFESFWTVVKPFLEPKTYKKVRFAYSNDPQSQKIMEALFDINKLDSSFGG 176
+F + ++ +KPFL K +++ +N QS +++ DI L+ +GG
Sbjct: 185 VIFHAVFSXIKPFLTEKIKERIHXHGNNYKQS--LLQHFPDILPLE--YGG 231
>pdb|3HX3|A Chain A, Crystal Structure Of Cralbp Mutant R234w
Length = 316
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 41/148 (27%), Positives = 65/148 (43%), Gaps = 17/148 (11%)
Query: 38 DKLGRPVLIMRPGFQNSSSTEGQIKYLV--YC--MENAIMNLNPDREQMVWLIDFQGWT- 92
DK GR V + +N S E ++ YC +E + N + +F+G+T
Sbjct: 151 DKYGRVVXLF--NIENWQSQEITFDEILQAYCFILEKLLENEETQINGFCIIENFKGFTX 208
Query: 93 --MGSVSVKVTRETANVLQNHYPERLGLAILYNPPKVFESFWTVVKPFLEPKTYKKVRFA 150
S+ R+ + LQ+ +P + P F + + VVKPFL+ K ++V F
Sbjct: 209 QQAASLRTSDLRKXVDXLQDSFPAWFKAIHFIHQPWYFTTTYNVVKPFLKSKLLERV-FV 267
Query: 151 YSNDPQS--QKIMEALFDINKLDSSFGG 176
+ +D Q+I D N L S FGG
Sbjct: 268 HGDDLSGFYQEI-----DENILPSDFGG 290
>pdb|1OLM|E Chain E, Supernatant Protein Factor In Complex With
Rrr-Alpha-Tocopherylquinone: A Link Between Oxidized
Vitamin E And Cholesterol Biosynthesis
Length = 403
Score = 34.3 bits (77), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 37/77 (48%), Gaps = 3/77 (3%)
Query: 80 EQMVWLIDFQGWTMGSV---SVKVTRETANVLQNHYPERLGLAILYNPPKVFESFWTVVK 136
E + + D +G + + +V+ E + + +YPE L + PK+F + ++K
Sbjct: 147 ETITIIYDCEGLGLKHLWKPAVEAYGEFLCMFEENYPETLKRLFVVKAPKLFPVAYNLIK 206
Query: 137 PFLEPKTYKKVRFAYSN 153
PFL T KK+ +N
Sbjct: 207 PFLSEDTRKKIMVLGAN 223
>pdb|1OLM|A Chain A, Supernatant Protein Factor In Complex With
Rrr-Alpha-Tocopherylquinone: A Link Between Oxidized
Vitamin E And Cholesterol Biosynthesis
pdb|1OLM|C Chain C, Supernatant Protein Factor In Complex With
Rrr-Alpha-Tocopherylquinone: A Link Between Oxidized
Vitamin E And Cholesterol Biosynthesis
Length = 403
Score = 34.3 bits (77), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 37/77 (48%), Gaps = 3/77 (3%)
Query: 80 EQMVWLIDFQGWTMGSV---SVKVTRETANVLQNHYPERLGLAILYNPPKVFESFWTVVK 136
E + + D +G + + +V+ E + + +YPE L + PK+F + ++K
Sbjct: 147 ETITIIYDCEGLGLKHLWKPAVEAYGEFLCMFEENYPETLKRLFVVKAPKLFPVAYNLIK 206
Query: 137 PFLEPKTYKKVRFAYSN 153
PFL T KK+ +N
Sbjct: 207 PFLSEDTRKKIMVLGAN 223
>pdb|1O6U|A Chain A, The Crystal Structure Of Human Supernatant Protein Factor
pdb|1O6U|C Chain C, The Crystal Structure Of Human Supernatant Protein Factor
pdb|1O6U|E Chain E, The Crystal Structure Of Human Supernatant Protein Factor
Length = 403
Score = 33.5 bits (75), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 36/77 (46%), Gaps = 3/77 (3%)
Query: 80 EQMVWLIDFQGWTMGSV---SVKVTRETANVLQNHYPERLGLAILYNPPKVFESFWTVVK 136
E + + D +G + + +V+ E + +YPE L + PK+F + ++K
Sbjct: 147 ETITIIYDCEGLGLKHLWKPAVEAYGEFLCXFEENYPETLKRLFVVKAPKLFPVAYNLIK 206
Query: 137 PFLEPKTYKKVRFAYSN 153
PFL T KK+ +N
Sbjct: 207 PFLSEDTRKKIXVLGAN 223
>pdb|3P0L|A Chain A, Human Steroidogenic Acute Regulatory Protein
pdb|3P0L|B Chain B, Human Steroidogenic Acute Regulatory Protein
pdb|3P0L|C Chain C, Human Steroidogenic Acute Regulatory Protein
pdb|3P0L|D Chain D, Human Steroidogenic Acute Regulatory Protein
Length = 221
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 34/74 (45%), Gaps = 4/74 (5%)
Query: 47 MRPGFQNSSSTEGQIK--YLVYCMENAIMNLNPDREQMVWL--IDFQGWTMGSVSVKVTR 102
M F N +G I+ + CM + +P + ++ WL ID +GW S+ +V
Sbjct: 139 MATDFGNMPEQKGVIRAEHGPTCMVLHPLAGSPSKTKLTWLLSIDLKGWLPKSIINQVLS 198
Query: 103 ETANVLQNHYPERL 116
+T NH +RL
Sbjct: 199 QTQVDFANHLRKRL 212
>pdb|1ASH|A Chain A, The Structure Of Ascaris Hemoglobin Domain I At 2.2
Angstroms Resolution: Molecular Features Of Oxygen
Avidity
Length = 150
Score = 27.7 bits (60), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 13/42 (30%), Positives = 21/42 (50%)
Query: 102 RETANVLQNHYPERLGLAILYNPPKVFESFWTVVKPFLEPKT 143
RET N +R ++ PP+V+ FW + + +L KT
Sbjct: 83 RETFNAYTRELLDRHARDHVHMPPEVWTDFWKLFEEYLGKKT 124
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.134 0.399
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,133,290
Number of Sequences: 62578
Number of extensions: 316673
Number of successful extensions: 641
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 627
Number of HSP's gapped (non-prelim): 14
length of query: 274
length of database: 14,973,337
effective HSP length: 97
effective length of query: 177
effective length of database: 8,903,271
effective search space: 1575878967
effective search space used: 1575878967
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (24.3 bits)