Query 023994
Match_columns 274
No_of_seqs 214 out of 1278
Neff 7.9
Searched_HMMs 46136
Date Fri Mar 29 08:09:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023994.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023994hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1470 Phosphatidylinositol t 100.0 4.4E-41 9.4E-46 299.7 16.7 194 1-200 69-265 (324)
2 PF00650 CRAL_TRIO: CRAL/TRIO 100.0 6E-33 1.3E-37 227.4 8.2 150 25-177 3-159 (159)
3 smart00516 SEC14 Domain in hom 100.0 6E-30 1.3E-34 209.4 14.5 140 37-179 15-158 (158)
4 KOG1471 Phosphatidylinositol t 100.0 2.8E-29 6E-34 228.8 14.4 177 1-181 65-260 (317)
5 cd00170 SEC14 Sec14p-like lipi 100.0 8.9E-28 1.9E-32 194.5 13.8 144 30-177 9-157 (157)
6 PF13716 CRAL_TRIO_2: Divergen 99.7 1.2E-17 2.5E-22 136.0 2.6 140 31-179 3-145 (149)
7 KOG4406 CDC42 Rho GTPase-activ 98.9 1.1E-08 2.3E-13 94.0 9.4 130 29-169 80-214 (467)
8 PF14213 DUF4325: Domain of un 50.7 44 0.00095 23.4 4.9 46 83-130 19-66 (74)
9 KOG1838 Alpha/beta hydrolase [ 46.9 2E+02 0.0043 27.4 9.8 74 39-123 122-204 (409)
10 PF03641 Lysine_decarbox: Poss 43.4 87 0.0019 24.5 6.1 55 98-152 64-125 (133)
11 PF11964 SpoIIAA-like: SpoIIAA 39.8 78 0.0017 23.2 5.1 83 57-151 13-96 (109)
12 COG2994 HlyC ACP:hemolysin acy 32.3 44 0.00095 26.9 2.6 85 21-118 44-129 (148)
13 TIGR02364 dha_pts dihydroxyace 31.8 1.6E+02 0.0036 22.9 5.9 52 79-139 59-110 (125)
14 KOG1534 Putative transcription 31.2 95 0.0021 27.2 4.6 64 63-129 74-145 (273)
15 PRK14484 phosphotransferase ma 29.8 1.6E+02 0.0036 23.0 5.5 49 80-139 58-106 (124)
16 PRK03592 haloalkane dehalogena 27.0 2.8E+02 0.006 24.1 7.3 44 82-125 55-127 (295)
17 PF11385 DUF3189: Protein of u 25.8 2.3E+02 0.005 22.9 5.8 54 27-90 48-101 (148)
18 COG2961 ComJ Protein involved 25.6 38 0.00082 30.1 1.3 25 118-142 238-262 (279)
19 PF04378 RsmJ: Ribosomal RNA s 25.2 29 0.00063 30.6 0.6 26 118-143 207-232 (245)
20 PRK11613 folP dihydropteroate 22.9 5.4E+02 0.012 23.2 8.2 94 18-113 99-213 (282)
21 PF11339 DUF3141: Protein of u 22.0 4.2E+02 0.0091 26.4 7.6 63 56-130 117-179 (581)
22 PRK05325 hypothetical protein; 21.5 2.1E+02 0.0045 27.3 5.4 44 80-125 223-270 (401)
23 PF04548 AIG1: AIG1 family; I 21.0 5E+02 0.011 21.7 7.4 74 40-122 47-122 (212)
No 1
>KOG1470 consensus Phosphatidylinositol transfer protein PDR16 and related proteins [Lipid transport and metabolism]
Probab=100.00 E-value=4.4e-41 Score=299.70 Aligned_cols=194 Identities=43% Similarity=0.752 Sum_probs=181.9
Q ss_pred CHHHHHHHHHHcCCCC-cchhhhHHHHhcCceEeccCCCCCCCcEEEEcc--CCCCCCCHHHHHHHHHHHHHHHHHhhCC
Q 023994 1 MLVESVKWRLEYKPEK-IVWEDVAREAETGKLYRANFCDKLGRPVLIMRP--GFQNSSSTEGQIKYLVYCMENAIMNLNP 77 (274)
Q Consensus 1 ML~~~l~WR~~~~~d~-i~~~~v~~~l~~g~~~~~g~~Dk~GrpV~~~r~--g~~d~~~~~~~~r~~v~~~E~~~~~~~~ 77 (274)
||.++|.||+++++.. +.++++..++++|++|.+| +|++||||+|+++ ++.+..+..++.|+++|+||.++..++.
T Consensus 69 ml~~tL~WR~~~~~~~~~~~~Ev~~e~~tGK~yi~G-~D~~gRPVl~~~~~~~~qn~~t~~~~~r~~Vy~mE~Ai~~lp~ 147 (324)
T KOG1470|consen 69 MLSNTLKWRRSFGPEEVIEADEVAAELETGKAYILG-HDKDGRPVLYLRPRPHRQNTKTQKELERLLVYTLENAILFLPP 147 (324)
T ss_pred HHHHHhHHHHhcCCccccCHHHHHHHhhcCcEEEec-ccCCCCeEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHhCCC
Confidence 8999999999999999 8888999999999999999 8999999999955 4455668999999999999999999999
Q ss_pred CcccEEEEEeCCCCCCCCCCHHHHHHHHHHHhhhhhhhcCeEEEEcCCCcchhhHHhhhccCChhhhcceEEecCCChhh
Q 023994 78 DREQMVWLIDFQGWTMGSVSVKVTRETANVLQNHYPERLGLAILYNPPKVFESFWTVVKPFLEPKTYKKVRFAYSNDPQS 157 (274)
Q Consensus 78 ~~~~~v~IiD~~g~sl~~~~~~~~k~~~~~lq~~yPe~l~~i~IiNaP~~~~~~~~ivk~fl~~~t~~KI~~~~~~~~~~ 157 (274)
++++++++||++|+|++|+++++++.++.++|.||||||+..+|+|+||+|..+|+++||||+++|+.||+|+.+.
T Consensus 148 ~qe~~~~L~D~~~fs~sN~d~~~~k~~~~~lq~hYPErLg~a~l~~~P~iF~~~wkiikpflDp~t~~Kv~F~~~~---- 223 (324)
T KOG1470|consen 148 GQEQFVWLFDLTGFSMSNPDIKFLKELLHILQDHYPERLGKALLVNAPWIFQPFWKIIKPFLDPKTASKVKFVEPK---- 223 (324)
T ss_pred CcceEEEEEecccCcccCCCcHHHHHHHHHHHHhChHHhhhhhhcCChHHHHHHHHHhhhccChhhhceeEEecCh----
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999763
Q ss_pred HHHHHccCCccCcchhcCCCCCCCCCcHHHHHhhhhchHHHHH
Q 023994 158 QKIMEALFDINKLDSSFGGRSRVGFDYEAFGQLMRADDKKKSD 200 (274)
Q Consensus 158 ~~~L~~~id~~~LP~~~GG~~~~~~~~~~~~~~~~~~d~~~~~ 200 (274)
..+.+|||+++||..|||+..+.|.|+++|..+.+++.....
T Consensus 224 -~~l~~~~d~~~l~s~~GG~~~~~y~~e~~~~~~~~~~~~~~~ 265 (324)
T KOG1470|consen 224 -DDLSEYFDESQLPSLFGGKLLFEYTHEEYWPQMKEDDSSLRL 265 (324)
T ss_pred -hHHHhhCCccccchhhCCCcccccCCcchhhhhhhhHHHHHH
Confidence 459999999999999999999999999999999888764443
No 2
>PF00650 CRAL_TRIO: CRAL/TRIO domain; InterPro: IPR001251 This entry defines the C-terminal of various retinaldehyde/retinal-binding proteins that may be functional components of the visual cycle. Cellular retinaldehyde-binding protein (CRALBP) carries 11-cis-retinol or 11-cis-retinaldehyde as endogenous ligands and may function as a substrate carrier protein that modulates interaction of these retinoids with visual cycle enzymes []. The multidomain protein Trio binds the LAR transmembrane tyrosine phosphatase, contains a protein kinase domain, and has separate rac-specific and rho-specific guanine nucleotide exchange factor domains []. Trio is a multifunctional protein that integrates and amplifies signals involved in coordinating actin remodeling, which is necessary for cell migration and growth. Other members of the family are transfer proteins that include, guanine nucleotide exchange factor that may function as an effector of RAC1, phosphatidylinositol/phosphatidylcholine transfer protein that is required for the transport of secretory proteins from the golgi complex and alpha-tocopherol transfer protein that enhances the transfer of the ligand between separate membranes.; PDB: 1OIZ_A 1R5L_A 1OIP_A 3HX3_A 3HY5_A 1OLM_E 1O6U_E 3Q8G_A 3B7Q_B 3B7Z_A ....
Probab=99.98 E-value=6e-33 Score=227.43 Aligned_cols=150 Identities=32% Similarity=0.625 Sum_probs=125.7
Q ss_pred HHhcCceEeccCCCCCCCcEEEEccCCCCCC--CHHHHHHHHHHHHHHHHHhhC--CCcccEEEEEeCCCCCCCCCC---
Q 023994 25 EAETGKLYRANFCDKLGRPVLIMRPGFQNSS--STEGQIKYLVYCMENAIMNLN--PDREQMVWLIDFQGWTMGSVS--- 97 (274)
Q Consensus 25 ~l~~g~~~~~g~~Dk~GrpV~~~r~g~~d~~--~~~~~~r~~v~~~E~~~~~~~--~~~~~~v~IiD~~g~sl~~~~--- 97 (274)
.++.|..+++| +|++||||++++++++++. +.++.+++.++++|..++.++ .+..|+++|+|++|+++++++
T Consensus 3 ~~~~~~~~~~g-~D~~gr~v~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~~~~iiD~~g~~~~~~~~~~ 81 (159)
T PF00650_consen 3 ILKSGPFYLHG-RDKDGRPVIYIRLGRFDPKKFSPEDVIRFFVYLLERMLKRMPEGGQVEGIVVIIDLSGFSLSNFDWWP 81 (159)
T ss_dssp HHTTSCEEEEE-E-TTS-EEEEEEGTT--HHTS-HHHHHHHHHHHHHHHHHTHHHTSHHH-EEEEEE-TT--HHHHHCHH
T ss_pred HHCCeeEEECC-CCCCcCEEEEEEcccCCCCcCCHHHHHHHHHHHHHHHHhhhcccccceeEEEEEeCCCceEeccccch
Confidence 45678888887 7999999999999999875 467999999999999997664 478999999999999999987
Q ss_pred HHHHHHHHHHHhhhhhhhcCeEEEEcCCCcchhhHHhhhccCChhhhcceEEecCCChhhHHHHHccCCccCcchhcCCC
Q 023994 98 VKVTRETANVLQNHYPERLGLAILYNPPKVFESFWTVVKPFLEPKTYKKVRFAYSNDPQSQKIMEALFDINKLDSSFGGR 177 (274)
Q Consensus 98 ~~~~k~~~~~lq~~yPe~l~~i~IiNaP~~~~~~~~ivk~fl~~~t~~KI~~~~~~~~~~~~~L~~~id~~~LP~~~GG~ 177 (274)
.+.++.++++++.+||++++++||+|+|++|+++|+++++|++++|++||+++++. ++.+.|.++||+++||.+|||+
T Consensus 82 ~~~~k~~~~~~~~~yP~rl~~i~iin~p~~~~~~~~~~~~~l~~~~~~ki~~~~~~--~~~~~l~~~i~~~~lP~~~GG~ 159 (159)
T PF00650_consen 82 ISFLKKIIQLLQDHYPERLGKIYIINAPWFFRVLWKIVKPFLSPKTREKIVFHSGS--DWKAKLKEYIDPEQLPVEYGGT 159 (159)
T ss_dssp HHHHHHHHHHHHHHSTTTEEEEEEES--TTHHHHHHHHGGGS-HHHHCTEEEECTT--CHCHHHCCCSTGGGSBGGGTSS
T ss_pred hhhhhhhhhhhcccCCccceeEEEEecChhhhhhHhHHHhhcCHhhheeEEEECCc--ccHHHHHhhCCHhHCchhcCCC
Confidence 89999999999999999999999999999999999999999999999999999654 3456899999999999999997
No 3
>smart00516 SEC14 Domain in homologues of a S. cerevisiae phosphatidylinositol transfer protein (Sec14p). Domain in homologues of a S. cerevisiae phosphatidylinositol transfer protein (Sec14p) and in RhoGAPs, RhoGEFs and the RasGAP, neurofibromin (NF1). Lipid-binding domain. The SEC14 domain of Dbl is known to associate with G protein beta/gamma subunits.
Probab=99.97 E-value=6e-30 Score=209.42 Aligned_cols=140 Identities=36% Similarity=0.663 Sum_probs=130.9
Q ss_pred CCCCCCcEEEEccCCCCCC--CHHHHHHHHHHHHHHHHHh--hCCCcccEEEEEeCCCCCCCCCCHHHHHHHHHHHhhhh
Q 023994 37 CDKLGRPVLIMRPGFQNSS--STEGQIKYLVYCMENAIMN--LNPDREQMVWLIDFQGWTMGSVSVKVTRETANVLQNHY 112 (274)
Q Consensus 37 ~Dk~GrpV~~~r~g~~d~~--~~~~~~r~~v~~~E~~~~~--~~~~~~~~v~IiD~~g~sl~~~~~~~~k~~~~~lq~~y 112 (274)
+|++||||++++++++++. +.+++++++++.+|.+++. .+.++.|+++|+|++|+++++++++.++.++++++.+|
T Consensus 15 ~D~~GrpV~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~i~D~~~~~~~~~~~~~lk~~~~~~~~~y 94 (158)
T smart00516 15 YDKDGRPVLIFRAGRFDLKSVTLEELLRYLVYVLEKILQREKKTGGIEGFTVIFDLKGLSMSNPDLSVLRKILKILQDHY 94 (158)
T ss_pred CCCCcCEEEEEeccccccCcCCHHHHHHHHHHHHHHHHHHHhcCCCeeeEEEEEECCCCCcccccHHHHHHHHHHHHHHh
Confidence 8999999999999998754 6889999999999999987 56678999999999999999999999999999999999
Q ss_pred hhhcCeEEEEcCCCcchhhHHhhhccCChhhhcceEEecCCChhhHHHHHccCCccCcchhcCCCCC
Q 023994 113 PERLGLAILYNPPKVFESFWTVVKPFLEPKTYKKVRFAYSNDPQSQKIMEALFDINKLDSSFGGRSR 179 (274)
Q Consensus 113 Pe~l~~i~IiNaP~~~~~~~~ivk~fl~~~t~~KI~~~~~~~~~~~~~L~~~id~~~LP~~~GG~~~ 179 (274)
|++++++||+|+|++++++|+++++|+++++++||++++++ +.+.|.++||+++||.+|||++.
T Consensus 95 p~~l~~i~ivn~p~~~~~~~~~~~~~l~~~~~~ki~~~~~~---~~~~L~~~i~~~~lP~~~GG~~~ 158 (158)
T smart00516 95 PERLGKVLIINPPWFFRVLWKIIKPFLDEKTREKIRFVGND---SKEELLEYIDPEQLPEELGGTLD 158 (158)
T ss_pred HHHhCeEEEECCCHHHHHHHHHHHhhcChhhhccEEEeCCC---CHHHHHhhCCHhhCcHhhCCCCC
Confidence 99999999999999999999999999999999999999863 36889999999999999999974
No 4
>KOG1471 consensus Phosphatidylinositol transfer protein SEC14 and related proteins [Lipid transport and metabolism]
Probab=99.96 E-value=2.8e-29 Score=228.75 Aligned_cols=177 Identities=27% Similarity=0.418 Sum_probs=143.6
Q ss_pred CHHHHHHHHHHcCCCCcchh-hhHHHHhc-CceEeccCCCCCCCcEEEEccCCCCCCC------HHHHHHHHH-------
Q 023994 1 MLVESVKWRLEYKPEKIVWE-DVAREAET-GKLYRANFCDKLGRPVLIMRPGFQNSSS------TEGQIKYLV------- 65 (274)
Q Consensus 1 ML~~~l~WR~~~~~d~i~~~-~v~~~l~~-g~~~~~g~~Dk~GrpV~~~r~g~~d~~~------~~~~~r~~v------- 65 (274)
||++++.||++++++.|..+ .....+.. -....+| .|++|+|+++.+.|..+... ..+..++.+
T Consensus 65 ~l~~~l~~r~~~~~d~i~~~~~~~~~~~~~~~~~~~~-~~~~g~~v~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~e~~~ 143 (317)
T KOG1471|consen 65 MLKRYLNWRKRNKLDEIFEDFEEDDELLKYYPQGLHG-VDKEGRPVYIERLGKIDPKGLLKRTGSLDYLKYHFKEFEKVF 143 (317)
T ss_pred HHHHHHHHHHHhCCccHhhccccchhhhhhccccccc-cCCCCCEEEEeccCCCCcccceeeccHHHHHHHHHHHHHHHH
Confidence 68899999999999998554 22222221 1123444 79999999999999987652 344444444
Q ss_pred -HHHHHHHHhhCCCcccEEEEEeCCCCCCCCC---CHHHHHHHHHHHhhhhhhhcCeEEEEcCCCcchhhHHhhhccCCh
Q 023994 66 -YCMENAIMNLNPDREQMVWLIDFQGWTMGSV---SVKVTRETANVLQNHYPERLGLAILYNPPKVFESFWTVVKPFLEP 141 (274)
Q Consensus 66 -~~~E~~~~~~~~~~~~~v~IiD~~g~sl~~~---~~~~~k~~~~~lq~~yPe~l~~i~IiNaP~~~~~~~~ivk~fl~~ 141 (274)
..+|...+....+++|++.|+|++|++++++ .+..+++++.+++++||++++++||||+|++|+++|+++||||++
T Consensus 144 ~~~~e~~~~~~~~~~~g~~~I~Dl~G~~~~~~~~~~~~~~~~~~~~~q~~yPe~l~~~~iIN~P~~f~~~~~~ikpfL~~ 223 (317)
T KOG1471|consen 144 KLVLELELKTGERQISGIVTIFDLKGVSLSHLLKPAPTLLKKILKILQDNYPERLKRIHIINAPTIFSALWKVVKPFLDE 223 (317)
T ss_pred HHHHHHHHHHhcCCcceeEEEEECCCCcchhHHHHHHHHHHHHHHHHHHhCHHhhceEEEEcCchhHHHHHHHHhccCCH
Confidence 4444444444567999999999999999987 578999999999999999999999999999999999999999999
Q ss_pred hhhcceEEecCCChhhHHHHHccCCccCcchhcCCCCCCC
Q 023994 142 KTYKKVRFAYSNDPQSQKIMEALFDINKLDSSFGGRSRVG 181 (274)
Q Consensus 142 ~t~~KI~~~~~~~~~~~~~L~~~id~~~LP~~~GG~~~~~ 181 (274)
+|++||++++++ +.+.|.++|+++.||.+|||++.+.
T Consensus 224 kt~~ki~~~~~~---~~~~L~k~i~~~~LP~~yGG~~~~~ 260 (317)
T KOG1471|consen 224 KTRKKIHVLHSK---DKESLLKYIPPEVLPEEYGGTCGDL 260 (317)
T ss_pred HHHhhheecCCC---chhhhhhhCCHhhCccccCCCcccc
Confidence 999999955443 4799999999999999999999974
No 5
>cd00170 SEC14 Sec14p-like lipid-binding domain. Found in secretory proteins, such as S. cerevisiae phosphatidylinositol transfer protein (Sec14p), and in lipid regulated proteins such as RhoGAPs, RhoGEFs and neurofibromin (NF1). SEC14 domain of Dbl is known to associate with G protein beta/gamma subunits.
Probab=99.95 E-value=8.9e-28 Score=194.51 Aligned_cols=144 Identities=35% Similarity=0.612 Sum_probs=129.8
Q ss_pred ceEeccCCCCCCCcEEEEccCCCCCC---CHHHHHHHHHHHHHHHHHhhCCCcccEEEEEeCCCCCCCCC--CHHHHHHH
Q 023994 30 KLYRANFCDKLGRPVLIMRPGFQNSS---STEGQIKYLVYCMENAIMNLNPDREQMVWLIDFQGWTMGSV--SVKVTRET 104 (274)
Q Consensus 30 ~~~~~g~~Dk~GrpV~~~r~g~~d~~---~~~~~~r~~v~~~E~~~~~~~~~~~~~v~IiD~~g~sl~~~--~~~~~k~~ 104 (274)
.++..|++|++||||++++.+..+.. ..++.+++.++.+|..++.+.....|+++|+|++|++++++ +.+.++.+
T Consensus 9 ~~~~~~~~D~~gr~V~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~i~D~~~~~~~~~~~~~~~~k~~ 88 (157)
T cd00170 9 KVGYLGGRDKEGRPVLIIRAGNKDLSKSLDSEELLRYLVYTLEKLLQEDDEQVEGFVVIIDLKGLSLSHLLPDPSLLKKI 88 (157)
T ss_pred cccccCCCCCCcCEEEEEecCCcchhhcCCHHHHHHHHHHHHHHHHhhhhhcccceEEEEECCCCChhccchhHHHHHHH
Confidence 44555558999999999999965443 24889999999999999887766689999999999999998 78999999
Q ss_pred HHHHhhhhhhhcCeEEEEcCCCcchhhHHhhhccCChhhhcceEEecCCChhhHHHHHccCCccCcchhcCCC
Q 023994 105 ANVLQNHYPERLGLAILYNPPKVFESFWTVVKPFLEPKTYKKVRFAYSNDPQSQKIMEALFDINKLDSSFGGR 177 (274)
Q Consensus 105 ~~~lq~~yPe~l~~i~IiNaP~~~~~~~~ivk~fl~~~t~~KI~~~~~~~~~~~~~L~~~id~~~LP~~~GG~ 177 (274)
+++++.+||++++++||+|+|++++++|+++++|+++++++||++++++ .+.|.++|++++||.+|||+
T Consensus 89 ~~~~~~~yp~~l~~v~ivn~p~~~~~~~~~~~~~l~~~~~~ki~~~~~~----~~~L~~~i~~~~Lp~~~GG~ 157 (157)
T cd00170 89 LKILQDNYPERLKAVYIINPPWFFKVLWKIVKPFLSEKTRKKIVFLGSD----KEELLKYIDKEQLPEEYGGT 157 (157)
T ss_pred HHHHHHhChHhhCeEEEECCCHhHHHHHHHHHHhcCHhhhhhEEEecCC----HHHHHhhCChhhCcHhhCCC
Confidence 9999999999999999999999999999999999999999999999763 57899999999999999996
No 6
>PF13716 CRAL_TRIO_2: Divergent CRAL/TRIO domain; PDB: 2D4Q_B 3PG7_B 2E2X_B 3P7Z_B 3PEG_A.
Probab=99.68 E-value=1.2e-17 Score=136.02 Aligned_cols=140 Identities=21% Similarity=0.322 Sum_probs=95.7
Q ss_pred eEeccCCCCCCCcEEEEccCCCCCCCHHHHHHHHHHHHHHHHHhhCCCcccEEEEEeCCCCCCCC-CCHHHHHHHHHHHh
Q 023994 31 LYRANFCDKLGRPVLIMRPGFQNSSSTEGQIKYLVYCMENAIMNLNPDREQMVWLIDFQGWTMGS-VSVKVTRETANVLQ 109 (274)
Q Consensus 31 ~~~~g~~Dk~GrpV~~~r~g~~d~~~~~~~~r~~v~~~E~~~~~~~~~~~~~v~IiD~~g~sl~~-~~~~~~k~~~~~lq 109 (274)
++..||+|++||||+++...+. +. ..+..+.+.|++...... ....++++|+|++|++..+ .++..++++.+.+.
T Consensus 3 ~~~~gG~d~~g~pV~~~~~~~~-~~-~~~~~~ll~yl~~~l~~~--~~~~~f~vVid~~~~~~~~~~~~~~l~~~~~~l~ 78 (149)
T PF13716_consen 3 FFYPGGRDREGRPVVVFIASRL-PS-SDDLERLLLYLLSTLSEE--VVDKPFSVVIDHTGFSRSSEPSLSWLKQLYKLLP 78 (149)
T ss_dssp E-EEEEEBTTS-EEEEEEGGG--C--TTHHHHHHHHHHHHH-TT--TTTS-EEEEEE-TT--GGG---HHHHHHTTTSS-
T ss_pred EEEecccCCCcCEEEEEECCcC-cc-hhhHHHHHHHHHHhhhHH--hcCCCEEEEEEcCCCccccCCchHHHHHHHHHHH
Confidence 3455679999999999998887 32 224444444443333222 1246799999999998855 47999999999999
Q ss_pred hhhhhhcCeEEEEcCCCcchhhH-HhhhccCChhh-hcceEEecCCChhhHHHHHccCCccCcchhcCCCCC
Q 023994 110 NHYPERLGLAILYNPPKVFESFW-TVVKPFLEPKT-YKKVRFAYSNDPQSQKIMEALFDINKLDSSFGGRSR 179 (274)
Q Consensus 110 ~~yPe~l~~i~IiNaP~~~~~~~-~ivk~fl~~~t-~~KI~~~~~~~~~~~~~L~~~id~~~LP~~~GG~~~ 179 (274)
..|+.+++++||+|++++++.++ .+.+++.+.+. ..||.++.+ .++|.++||+++||.++||+.+
T Consensus 79 ~~~~~nl~~vyiv~p~~~~k~~~~~~~~~~~~~~~~~~kv~~~~s-----l~~L~~~i~~~qL~~~lp~~~~ 145 (149)
T PF13716_consen 79 RKYKKNLKKVYIVHPNWFLKKILATLLRPFVSSKFWKKKVVYVSS-----LSELSKHIDPSQLPESLPGVLQ 145 (149)
T ss_dssp HHHHHTEEEEEEES--HHHHHHHHHTTTTGGGGTT--TTEEEESS-----TCGGGGTSGGGG------HHH-
T ss_pred HHHhhceEEEEEECCCHHHHHHHHHHhcccccccccceEEEEECC-----HHHHHhhCCHHHhcccCCCEEe
Confidence 99999999999999999999999 66678889998 999999976 5789999999999999998876
No 7
>KOG4406 consensus CDC42 Rho GTPase-activating protein [Signal transduction mechanisms; Cytoskeleton]
Probab=98.86 E-value=1.1e-08 Score=93.97 Aligned_cols=130 Identities=19% Similarity=0.285 Sum_probs=109.7
Q ss_pred CceEeccC-CCCCCCcEEEEccCCCCCCC-HHH--HHHHHHHHHHHHHHhhCCCcccEEEEEeCCCCCCCCC-CHHHHHH
Q 023994 29 GKLYRANF-CDKLGRPVLIMRPGFQNSSS-TEG--QIKYLVYCMENAIMNLNPDREQMVWLIDFQGWTMGSV-SVKVTRE 103 (274)
Q Consensus 29 g~~~~~g~-~Dk~GrpV~~~r~g~~d~~~-~~~--~~r~~v~~~E~~~~~~~~~~~~~v~IiD~~g~sl~~~-~~~~~k~ 103 (274)
+.+.+.|+ .|++||+|+++.+.++.+.+ +++ ++++.++.++..++.- .+.++=..|+...+. ..+++.+
T Consensus 80 ei~qvi~~~~D~~gr~iivv~a~rlp~~~eld~~~li~~~v~~id~~Ve~D------Yt~vYfh~gl~s~nkp~l~~l~~ 153 (467)
T KOG4406|consen 80 EILQVIGDAKDKQGRKIIVVYACRLPSSSELDDIRLISYLVYTIDKYVEND------YTLVYFHHGLPSDNKPYLQLLFD 153 (467)
T ss_pred heeeeccCcccccCCeeEEEEEecCCchhhhhhHHHHHHHHHHHHHHHhcc------ceeeehhcCCcccccchHHHHHH
Confidence 67777875 69999999999999997764 333 7889999999888642 677777888877765 5788888
Q ss_pred HHHHHhhhhhhhcCeEEEEcCCCcchhhHHhhhccCChhhhcceEEecCCChhhHHHHHccCCccC
Q 023994 104 TANVLQNHYPERLGLAILYNPPKVFESFWTVVKPFLEPKTYKKVRFAYSNDPQSQKIMEALFDINK 169 (274)
Q Consensus 104 ~~~~lq~~yPe~l~~i~IiNaP~~~~~~~~ivk~fl~~~t~~KI~~~~~~~~~~~~~L~~~id~~~ 169 (274)
...-+..+|-..++.+|+|++.|+..++|+++|||++.|+.+||+-+.. ..+|.++|.-+.
T Consensus 154 aYke~Dr~~~KNlKalYvvHptwfikvi~n~~kplIS~KF~rKi~Y~n~-----lseL~~~l~l~r 214 (467)
T KOG4406|consen 154 AYKELDRNFKKNLKALYVVHPTWFIKVIWNLFKPLISLKFTRKIIYFNS-----LSELFEALKLNR 214 (467)
T ss_pred HHHHHHHHHhhhhhheEEecHHHHHHHHHHHHhhhcchhhhceeEEeeh-----HHHHHHhhhhhh
Confidence 8888889999999999999999999999999999999999999998865 688888776443
No 8
>PF14213 DUF4325: Domain of unknown function (DUF4325)
Probab=50.69 E-value=44 Score=23.37 Aligned_cols=46 Identities=17% Similarity=0.202 Sum_probs=30.8
Q ss_pred EEEEeCCCCCCCCCCHHHHHHHHHHHhhhhh--hhcCeEEEEcCCCcchh
Q 023994 83 VWLIDFQGWTMGSVSVKVTRETANVLQNHYP--ERLGLAILYNPPKVFES 130 (274)
Q Consensus 83 v~IiD~~g~sl~~~~~~~~k~~~~~lq~~yP--e~l~~i~IiNaP~~~~~ 130 (274)
.+++|++|+ .-++.+++-.++..+...|| +.-+++.++|++.....
T Consensus 19 ~V~lDF~gv--~~~~ssFl~eafg~l~~~~~~~~~~~~l~~~~~~~~~~~ 66 (74)
T PF14213_consen 19 KVVLDFEGV--ESITSSFLNEAFGQLVREFGEEEIKKRLKFKNANESIKE 66 (74)
T ss_pred eEEEECCCc--ccccHHHHHHHHHHHHHHcCHHHHhheeEEecCCHHHHH
Confidence 388999998 44556777777777776776 33456777776644433
No 9
>KOG1838 consensus Alpha/beta hydrolase [General function prediction only]
Probab=46.91 E-value=2e+02 Score=27.44 Aligned_cols=74 Identities=19% Similarity=0.316 Sum_probs=51.4
Q ss_pred CCCCcEEEEccCCCCCCCHHHHHHHHHHHHHHHHHhhCCCcccEEEEEeCCCCCCCCC---------CHHHHHHHHHHHh
Q 023994 39 KLGRPVLIMRPGFQNSSSTEGQIKYLVYCMENAIMNLNPDREQMVWLIDFQGWTMGSV---------SVKVTRETANVLQ 109 (274)
Q Consensus 39 k~GrpV~~~r~g~~d~~~~~~~~r~~v~~~E~~~~~~~~~~~~~v~IiD~~g~sl~~~---------~~~~~k~~~~~lq 109 (274)
.+..|++++-+|.-. .+.+..+|.++..... ..--++|++-.|++-..+ +..-++.+++.+.
T Consensus 122 ~~~~P~vvilpGltg-~S~~~YVr~lv~~a~~--------~G~r~VVfN~RG~~g~~LtTpr~f~ag~t~Dl~~~v~~i~ 192 (409)
T KOG1838|consen 122 DGTDPIVVILPGLTG-GSHESYVRHLVHEAQR--------KGYRVVVFNHRGLGGSKLTTPRLFTAGWTEDLREVVNHIK 192 (409)
T ss_pred CCCCcEEEEecCCCC-CChhHHHHHHHHHHHh--------CCcEEEEECCCCCCCCccCCCceeecCCHHHHHHHHHHHH
Confidence 356699988888643 3455778877663221 123478999999776554 3578899999999
Q ss_pred hhhhhhcCeEEEEc
Q 023994 110 NHYPERLGLAILYN 123 (274)
Q Consensus 110 ~~yPe~l~~i~IiN 123 (274)
..||.+ +++.+-
T Consensus 193 ~~~P~a--~l~avG 204 (409)
T KOG1838|consen 193 KRYPQA--PLFAVG 204 (409)
T ss_pred HhCCCC--ceEEEE
Confidence 999998 444443
No 10
>PF03641 Lysine_decarbox: Possible lysine decarboxylase; InterPro: IPR005269 This entry represents a cytokinin-activating enzyme working in the direct activation pathway. It is a phosphoribohydrolase that converts inactive cytokinin nucleotides to the biologically active free-base forms [, ]. The proteins in this entry belong to the LOG family of proteins.; PDB: 1YDH_B 2Q4D_A 1RCU_C 1WEH_B 3SBX_F 3BQ9_B 2PMB_D 3GH1_D 1WEK_C 3QUA_A ....
Probab=43.42 E-value=87 Score=24.55 Aligned_cols=55 Identities=16% Similarity=0.210 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHhhhhhhh-cC-eEEEEcCCCcchhhHHhh-----hccCChhhhcceEEecC
Q 023994 98 VKVTRETANVLQNHYPER-LG-LAILYNPPKVFESFWTVV-----KPFLEPKTYKKVRFAYS 152 (274)
Q Consensus 98 ~~~~k~~~~~lq~~yPe~-l~-~i~IiNaP~~~~~~~~iv-----k~fl~~~t~~KI~~~~~ 152 (274)
+..+-++..++.-.+=.. -+ -++++|..-+++-++..+ ..|+++...+.++++.+
T Consensus 64 ~GTl~El~~~~~~~~l~~~~~~Piil~~~~g~w~~l~~~l~~~~~~g~i~~~~~~~~~~~d~ 125 (133)
T PF03641_consen 64 IGTLDELFEALTLMQLGRHNKVPIILLNIDGFWDPLLEFLDRMIEEGFISPDDLDLLHFVDD 125 (133)
T ss_dssp HHHHHHHHHHHHHHHTTSSTS-EEEEEECGGCCHHHHHHHHHHHHTTSSSHHHHCCEEEESS
T ss_pred CchHHHHHHHHHHHhhccccCCCEEEeCCcchHHHHHHHHHHHHHCCCCCHHHCCeEEEeCC
Confidence 456677777766333333 34 699999988888888877 57999999999999865
No 11
>PF11964 SpoIIAA-like: SpoIIAA-like; InterPro: IPR021866 This family of proteins is functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 120 to 132 amino acids in length. This protein has a single completely conserved residue A that may be functionally important. ; PDB: 2Q3L_B 2OOK_A 3BL4_A.
Probab=39.81 E-value=78 Score=23.23 Aligned_cols=83 Identities=16% Similarity=0.162 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHHHHHHHhhCCCcccEEEEEeCC-CCCCCCCCHHHHHHHHHHHhhhhhhhcCeEEEEcCCCcchhhHHhh
Q 023994 57 TEGQIKYLVYCMENAIMNLNPDREQMVWLIDFQ-GWTMGSVSVKVTRETANVLQNHYPERLGLAILYNPPKVFESFWTVV 135 (274)
Q Consensus 57 ~~~~~r~~v~~~E~~~~~~~~~~~~~v~IiD~~-g~sl~~~~~~~~k~~~~~lq~~yPe~l~~i~IiNaP~~~~~~~~iv 135 (274)
.+++.+ +.-.++..+. ....+.+++|++ ++ ..+++.......+.... +...++++-||-.+.+...+.+++
T Consensus 13 ~ed~~~-~~~~~~~~~~----~~~~~~ll~d~~~~~--~~~~~~a~~~~~~~~~~-~~~~~~r~AvV~~~~~~~~~~~~~ 84 (109)
T PF11964_consen 13 EEDYKE-LLPALEELIA----DHGKIRLLVDLRRDF--EGWSPEARWEDAKFGLK-HLKHFRRIAVVGDSEWIRMIANFF 84 (109)
T ss_dssp HHHHHH-HHHHHHHHHT----TSSSEEEEEEEC-CE--EEEHHHHHHHHHHHHCC-CCGGEEEEEEE-SSCCCHHHHHHH
T ss_pred HHHHHH-HHHHHHHHHh----cCCceEEEEEecCcc--CCCCHHHHHHHHHhchh-hhcccCEEEEEECcHHHHHHHHHH
Confidence 444444 3333444432 346688999988 64 33445555555555455 888899999999999999999988
Q ss_pred hccCChhhhcceEEec
Q 023994 136 KPFLEPKTYKKVRFAY 151 (274)
Q Consensus 136 k~fl~~~t~~KI~~~~ 151 (274)
.++ +..-+++++
T Consensus 85 ~~~----~~~~~~~F~ 96 (109)
T PF11964_consen 85 AAF----PPIEVRYFP 96 (109)
T ss_dssp HHH-----SSEEEEE-
T ss_pred Hhc----CCCceEEEC
Confidence 886 344566663
No 12
>COG2994 HlyC ACP:hemolysin acyltransferase (hemolysin-activating protein) [Posttranslational modification, protein turnover, chaperones]
Probab=32.30 E-value=44 Score=26.91 Aligned_cols=85 Identities=16% Similarity=0.332 Sum_probs=48.5
Q ss_pred hhHHHHhcCceEeccCCCCCCCcEEEEccCCCCCCCHHHHHHHHHHHHHHHHHhhCCCcccEEEEEeCCCCCCCCCCHHH
Q 023994 21 DVAREAETGKLYRANFCDKLGRPVLIMRPGFQNSSSTEGQIKYLVYCMENAIMNLNPDREQMVWLIDFQGWTMGSVSVKV 100 (274)
Q Consensus 21 ~v~~~l~~g~~~~~g~~Dk~GrpV~~~r~g~~d~~~~~~~~r~~v~~~E~~~~~~~~~~~~~v~IiD~~g~sl~~~~~~~ 100 (274)
.+++.++.|-+.+ ++|++|+||.+.....++.....++++--.- ++-.......=++|+|+=. +++.
T Consensus 44 ~iLPalk~~Qf~l--y~de~g~Piaf~~WA~vde~~e~~lL~~~~~-----l~p~dW~SG~~iwii~~iA------PfGh 110 (148)
T COG2994 44 NILPALKLGQFAL--YFDEHGRPIAFCTWAFVDEQAEEELLENDRN-----LSPEDWASGNNIWIIDWIA------PFGH 110 (148)
T ss_pred HHhHHHhcCceEE--EEcCCCCeeEEEEEeecCHHHHHHHHhCCCC-----CChhhccCCCeeEEEEEEc------cCCc
Confidence 4566677775443 3699999999999988876443333221100 0000112344567777421 2334
Q ss_pred HHHHH-HHHhhhhhhhcCe
Q 023994 101 TRETA-NVLQNHYPERLGL 118 (274)
Q Consensus 101 ~k~~~-~~lq~~yPe~l~~ 118 (274)
.+.+. .+.+..||.+..+
T Consensus 111 ~r~~~~dl~~~lFp~~~vr 129 (148)
T COG2994 111 SRQMVKDLHRNLFPDRTVR 129 (148)
T ss_pred hHHHHHHHHHHhCchhhhh
Confidence 44555 7888899988544
No 13
>TIGR02364 dha_pts dihydroxyacetone kinase, phosphotransfer subunit. In E. coli and many other bacteria, unlike the yeasts and a few bacteria such as Citrobacter freundii, the dihydroxyacetone kinase (also called glycerone kinase) transfers a phosphate from a phosphoprotein rather than from ATP and contains multiple subunits. This protein, which resembles proteins of PTS transport systems, is found with its gene adjacent to
Probab=31.85 E-value=1.6e+02 Score=22.95 Aligned_cols=52 Identities=17% Similarity=0.238 Sum_probs=35.1
Q ss_pred cccEEEEEeCCCCCCCCCCHHHHHHHHHHHhhhhhhhcCeEEEEcCCCcchhhHHhhhccC
Q 023994 79 REQMVWLIDFQGWTMGSVSVKVTRETANVLQNHYPERLGLAILYNPPKVFESFWTVVKPFL 139 (274)
Q Consensus 79 ~~~~v~IiD~~g~sl~~~~~~~~k~~~~~lq~~yPe~l~~i~IiNaP~~~~~~~~ivk~fl 139 (274)
..+++++.|+ |=+..+ ....+..++ ++..+++..+|+|.+..++-..+..-.
T Consensus 59 ~dgVlvl~DL-Ggs~~n-----~e~a~~~l~---~~~~~~v~g~nlPlvega~~aa~~~~~ 110 (125)
T TIGR02364 59 ADGVLIFYDL-GSAVMN-----AEMAVELLE---DEDRDKVHLVDAPLVEGAFAAAVEAQV 110 (125)
T ss_pred CCCEEEEEcC-CCcHhH-----HHHHHHHhc---cccccEEEEechhHHHHHHHHHHHHcC
Confidence 5789999999 543221 112333333 355689999999999998888776544
No 14
>KOG1534 consensus Putative transcription factor FET5 [Transcription]
Probab=31.20 E-value=95 Score=27.17 Aligned_cols=64 Identities=23% Similarity=0.364 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHhhC------CCcccEEEEEeCCCCC-C-CCCCHHHHHHHHHHHhhhhhhhcCeEEEEcCCCcch
Q 023994 63 YLVYCMENAIMNLN------PDREQMVWLIDFQGWT-M-GSVSVKVTRETANVLQNHYPERLGLAILYNPPKVFE 129 (274)
Q Consensus 63 ~~v~~~E~~~~~~~------~~~~~~v~IiD~~g~s-l-~~~~~~~~k~~~~~lq~~yPe~l~~i~IiNaP~~~~ 129 (274)
.++|++|..+..+. ...+.-.+|+|+-|-- + .|+ ..++.++.-++. .-.++..+|++..+++..
T Consensus 74 gLv~cmEyl~~NldwL~~~~Gd~eddylifDcPGQIELytH~--pVm~~iv~hl~~-~~F~~c~Vylldsqf~vD 145 (273)
T KOG1534|consen 74 GLVYCMEYLLENLDWLEEEIGDVEDDYLIFDCPGQIELYTHL--PVMPQIVEHLKQ-WNFNVCVVYLLDSQFLVD 145 (273)
T ss_pred cchhHHHHHHHHHHHHHhhccCccCCEEEEeCCCeeEEeecC--hhHHHHHHHHhc-ccCceeEEEEeccchhhh
Confidence 46888888887653 3457788999998832 1 343 567788888877 335677888887776653
No 15
>PRK14484 phosphotransferase mannnose-specific family component IIA; Provisional
Probab=29.83 E-value=1.6e+02 Score=23.02 Aligned_cols=49 Identities=16% Similarity=0.187 Sum_probs=31.3
Q ss_pred ccEEEEEeCCCCCCCCCCHHHHHHHHHHHhhhhhhhcCeEEEEcCCCcchhhHHhhhccC
Q 023994 80 EQMVWLIDFQGWTMGSVSVKVTRETANVLQNHYPERLGLAILYNPPKVFESFWTVVKPFL 139 (274)
Q Consensus 80 ~~~v~IiD~~g~sl~~~~~~~~k~~~~~lq~~yPe~l~~i~IiNaP~~~~~~~~ivk~fl 139 (274)
.|++++.|+ |-+..| +...+..+. +- +++.++++|.+=.++-..+....
T Consensus 58 dGVlVltDL-Gssp~n-----~~~a~e~~~----~~-~~v~~~daPlVEGa~~Aav~~~~ 106 (124)
T PRK14484 58 DGVLIFFDL-GSAEMN-----AEMAIEMLD----GE-KKIIIIDAPIVEGAFTAAVLLSA 106 (124)
T ss_pred CCeEEEEeC-CChHHH-----HHHHHHhcC----CC-CcEEEECCcHHHHHHHHHHHHcC
Confidence 899999999 543222 222333333 22 89999999987666666555443
No 16
>PRK03592 haloalkane dehalogenase; Provisional
Probab=27.00 E-value=2.8e+02 Score=24.14 Aligned_cols=44 Identities=11% Similarity=0.053 Sum_probs=29.6
Q ss_pred EEEEEeCCCCCCCCC-----CHH-HHH-----------------------HHHHHHhhhhhhhcCeEEEEcCC
Q 023994 82 MVWLIDFQGWTMGSV-----SVK-VTR-----------------------ETANVLQNHYPERLGLAILYNPP 125 (274)
Q Consensus 82 ~v~IiD~~g~sl~~~-----~~~-~~k-----------------------~~~~~lq~~yPe~l~~i~IiNaP 125 (274)
-++.+|+.|++.+.. ++. .+. .+...+...||+++++++++|++
T Consensus 55 ~via~D~~G~G~S~~~~~~~~~~~~a~dl~~ll~~l~~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lil~~~~ 127 (295)
T PRK03592 55 RCLAPDLIGMGASDKPDIDYTFADHARYLDAWFDALGLDDVVLVGHDWGSALGFDWAARHPDRVRGIAFMEAI 127 (295)
T ss_pred EEEEEcCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCeEEEEECHHHHHHHHHHHhChhheeEEEEECCC
Confidence 689999999998743 221 111 12233457889999999999973
No 17
>PF11385 DUF3189: Protein of unknown function (DUF3189); InterPro: IPR021525 This family of proteins with unknown function appears to be restricted to Firmicutes
Probab=25.79 E-value=2.3e+02 Score=22.93 Aligned_cols=54 Identities=20% Similarity=0.238 Sum_probs=32.6
Q ss_pred hcCceEeccCCCCCCCcEEEEccCCCCCCCHHHHHHHHHHHHHHHHHhhCCCcccEEEEEeCCC
Q 023994 27 ETGKLYRANFCDKLGRPVLIMRPGFQNSSSTEGQIKYLVYCMENAIMNLNPDREQMVWLIDFQG 90 (274)
Q Consensus 27 ~~g~~~~~g~~Dk~GrpV~~~r~g~~d~~~~~~~~r~~v~~~E~~~~~~~~~~~~~v~IiD~~g 90 (274)
+.|.++..| +|..|+.|+++-.+.. .+...+.+.-+++ .+... .+=+.++|...
T Consensus 48 d~G~l~y~G-~De~gn~VY~lG~~~~----~~~~~~al~~l~~----i~~~~-~~~i~~vdt~~ 101 (148)
T PF11385_consen 48 DIGRLIYMG-TDEYGNEVYILGRKNN----GKIVERALKSLLE----ILGIE-NEEIILVDTSP 101 (148)
T ss_pred cCceEEEEE-EcCCCCEEEEEecCCh----HHHHHHHHHHHHH----HhCCC-CCcEEEEeccc
Confidence 468889998 7999999999976642 2223333333332 22211 34467778654
No 18
>COG2961 ComJ Protein involved in catabolism of external DNA [General function prediction only]
Probab=25.61 E-value=38 Score=30.12 Aligned_cols=25 Identities=28% Similarity=0.388 Sum_probs=21.2
Q ss_pred eEEEEcCCCcchhhHHhhhccCChh
Q 023994 118 LAILYNPPKVFESFWTVVKPFLEPK 142 (274)
Q Consensus 118 ~i~IiNaP~~~~~~~~ivk~fl~~~ 142 (274)
.++||||||-+.--...+-|||...
T Consensus 238 GMivINPPwtle~ql~~~LP~L~~~ 262 (279)
T COG2961 238 GMIVINPPWTLEQQLRAALPWLTTL 262 (279)
T ss_pred eEEEECCCccHHHHHHHHHHHHHHH
Confidence 5999999999998888888887653
No 19
>PF04378 RsmJ: Ribosomal RNA small subunit methyltransferase D, RsmJ; InterPro: IPR007473 This is a bacterial protein of unknown function, possibly secreted.; PDB: 2OO3_A.
Probab=25.23 E-value=29 Score=30.62 Aligned_cols=26 Identities=19% Similarity=0.362 Sum_probs=18.9
Q ss_pred eEEEEcCCCcchhhHHhhhccCChhh
Q 023994 118 LAILYNPPKVFESFWTVVKPFLEPKT 143 (274)
Q Consensus 118 ~i~IiNaP~~~~~~~~ivk~fl~~~t 143 (274)
.++|||+||-+.....-+-++|.+..
T Consensus 207 Gm~iiNPPw~l~~~l~~~l~~L~~~L 232 (245)
T PF04378_consen 207 GMLIINPPWTLDEELEEILPWLAETL 232 (245)
T ss_dssp EEEEES--TTHHHHHHHHHHHHHHHS
T ss_pred eEEEEcCCccHHHHHHHHHHHHHHHh
Confidence 59999999999988887777766543
No 20
>PRK11613 folP dihydropteroate synthase; Provisional
Probab=22.85 E-value=5.4e+02 Score=23.17 Aligned_cols=94 Identities=16% Similarity=0.172 Sum_probs=48.3
Q ss_pred chhhhHHHHhcCceEe---ccCCCCC--------CCcEEEEccCCCCCCC------HHHHHHHHHHHHHHHHHhh-CCCc
Q 023994 18 VWEDVAREAETGKLYR---ANFCDKL--------GRPVLIMRPGFQNSSS------TEGQIKYLVYCMENAIMNL-NPDR 79 (274)
Q Consensus 18 ~~~~v~~~l~~g~~~~---~g~~Dk~--------GrpV~~~r~g~~d~~~------~~~~~r~~v~~~E~~~~~~-~~~~ 79 (274)
.++.+...++.|.-++ .|..|++ |.++++..... .|.+ ..+.+.-+...++..+..+ ...+
T Consensus 99 ~~~va~~AL~~GadiINDI~g~~d~~~~~~~a~~~~~vVlmh~~g-~p~~~~~~~~y~dv~~~v~~~l~~~i~~a~~~GI 177 (282)
T PRK11613 99 KPEVIRESAKAGAHIINDIRSLSEPGALEAAAETGLPVCLMHMQG-NPKTMQEAPKYDDVFAEVNRYFIEQIARCEAAGI 177 (282)
T ss_pred CHHHHHHHHHcCCCEEEECCCCCCHHHHHHHHHcCCCEEEEcCCC-CCCccccCCCcccHHHHHHHHHHHHHHHHHHcCC
Confidence 3444455577887776 6644433 78888886522 1221 1233333323333333332 3345
Q ss_pred ccEEEEEeCCCCCCCC-C--CHHHHHHHHHHHhhhhh
Q 023994 80 EQMVWLIDFQGWTMGS-V--SVKVTRETANVLQNHYP 113 (274)
Q Consensus 80 ~~~v~IiD~~g~sl~~-~--~~~~~k~~~~~lq~~yP 113 (274)
..--+|+|- |+++.. . ++..++.+-.+-.-.||
T Consensus 178 ~~~~IilDP-GiGF~k~~~~n~~ll~~l~~l~~lg~P 213 (282)
T PRK11613 178 AKEKLLLDP-GFGFGKNLSHNYQLLARLAEFHHFNLP 213 (282)
T ss_pred ChhhEEEeC-CCCcCCCHHHHHHHHHHHHHHHhCCCC
Confidence 555789998 577643 2 45555555444333344
No 21
>PF11339 DUF3141: Protein of unknown function (DUF3141); InterPro: IPR024501 This family of proteins appears to be predominantly expressed in Proteobacteria. Their function is unknown.
Probab=21.98 E-value=4.2e+02 Score=26.35 Aligned_cols=63 Identities=16% Similarity=0.147 Sum_probs=45.8
Q ss_pred CHHHHHHHHHHHHHHHHHhhCCCcccEEEEEeCCCCCCCCCCHHHHHHHHHHHhhhhhhhcCeEEEEcCCCcchh
Q 023994 56 STEGQIKYLVYCMENAIMNLNPDREQMVWLIDFQGWTMGSVSVKVTRETANVLQNHYPERLGLAILYNPPKVFES 130 (274)
Q Consensus 56 ~~~~~~r~~v~~~E~~~~~~~~~~~~~v~IiD~~g~sl~~~~~~~~k~~~~~lq~~yPe~l~~i~IiNaP~~~~~ 130 (274)
++.+..+.....+|....+-+... ..++|=+|.| .. .+.++...+|+.++-+++--+|--..+
T Consensus 117 Tl~DV~~ae~~Fv~~V~~~hp~~~-kp~liGnCQg--------GW---a~~mlAA~~Pd~~gplvlaGaPlsywa 179 (581)
T PF11339_consen 117 TLEDVMRAEAAFVEEVAERHPDAP-KPNLIGNCQG--------GW---AAMMLAALRPDLVGPLVLAGAPLSYWA 179 (581)
T ss_pred cHHHHHHHHHHHHHHHHHhCCCCC-CceEEeccHH--------HH---HHHHHHhcCcCccCceeecCCCccccc
Confidence 567888888888887776654332 6677777765 33 346778899999999999888865544
No 22
>PRK05325 hypothetical protein; Provisional
Probab=21.49 E-value=2.1e+02 Score=27.30 Aligned_cols=44 Identities=18% Similarity=0.275 Sum_probs=30.2
Q ss_pred ccEEEEEeCCCCCCCCCCH----HHHHHHHHHHhhhhhhhcCeEEEEcCC
Q 023994 80 EQMVWLIDFQGWTMGSVSV----KVTRETANVLQNHYPERLGLAILYNPP 125 (274)
Q Consensus 80 ~~~v~IiD~~g~sl~~~~~----~~~k~~~~~lq~~yPe~l~~i~IiNaP 125 (274)
.=+.++.|.+| ||...-- .+.--+...|..+| +.+.-+||.|-.
T Consensus 223 AVmfclMDvSG-SM~~~~K~lakrff~lly~fL~r~Y-~~vEvvFI~H~t 270 (401)
T PRK05325 223 AVMFCLMDVSG-SMDEAEKDLAKRFFFLLYLFLRRKY-ENVEVVFIRHHT 270 (401)
T ss_pred EEEEEEEeCCC-CCchHHHHHHHHHHHHHHHHHHhcc-CceEEEEEeecC
Confidence 44677888888 4554321 33344566778999 999999999864
No 23
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=20.95 E-value=5e+02 Score=21.74 Aligned_cols=74 Identities=22% Similarity=0.349 Sum_probs=0.0
Q ss_pred CCCcEEEEc-cCCCCCCCHHHHHHHHHHHHHHHHHhhCCCcccEEEEEeCCCCCCCCCCHHHHHHHHHHHhhhhh-hhcC
Q 023994 40 LGRPVLIMR-PGFQNSSSTEGQIKYLVYCMENAIMNLNPDREQMVWLIDFQGWTMGSVSVKVTRETANVLQNHYP-ERLG 117 (274)
Q Consensus 40 ~GrpV~~~r-~g~~d~~~~~~~~r~~v~~~E~~~~~~~~~~~~~v~IiD~~g~sl~~~~~~~~k~~~~~lq~~yP-e~l~ 117 (274)
+|+.|.++. +|..++....+.+..-+. .++......++-+++|+.+..++ ..-+.++..++..|+ +.++
T Consensus 47 ~g~~v~VIDTPGl~d~~~~~~~~~~~i~---~~l~~~~~g~ha~llVi~~~r~t------~~~~~~l~~l~~~FG~~~~k 117 (212)
T PF04548_consen 47 DGRQVTVIDTPGLFDSDGSDEEIIREIK---RCLSLCSPGPHAFLLVIPLGRFT------EEDREVLELLQEIFGEEIWK 117 (212)
T ss_dssp TTEEEEEEE--SSEETTEEHHHHHHHHH---HHHHHTTT-ESEEEEEEETTB-S------HHHHHHHHHHHHHHCGGGGG
T ss_pred cceEEEEEeCCCCCCCcccHHHHHHHHH---HHHHhccCCCeEEEEEEecCcch------HHHHHHHHHHHHHccHHHHh
Q ss_pred eEEEE
Q 023994 118 LAILY 122 (274)
Q Consensus 118 ~i~Ii 122 (274)
.++||
T Consensus 118 ~~ivv 122 (212)
T PF04548_consen 118 HTIVV 122 (212)
T ss_dssp GEEEE
T ss_pred HhhHH
Done!