Query 023994
Match_columns 274
No_of_seqs 214 out of 1278
Neff 7.9
Searched_HMMs 29240
Date Mon Mar 25 16:22:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023994.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023994hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1olm_A SEC14-like protein 2; l 100.0 8.4E-40 2.9E-44 305.8 12.1 200 1-217 55-273 (403)
2 3hx3_A Retinaldehyde-binding p 100.0 1.3E-38 4.5E-43 289.0 15.6 188 1-193 112-306 (316)
3 1r5l_A Alpha-TTP, protein (alp 100.0 5.3E-38 1.8E-42 276.9 13.2 187 1-191 53-246 (262)
4 3q8g_A CRAL-TRIO domain-contai 100.0 4.1E-37 1.4E-41 279.5 13.3 208 1-215 81-316 (320)
5 1aua_A Phosphatidylinositol tr 100.0 5.9E-36 2E-40 268.8 14.8 177 1-181 72-268 (296)
6 3pg7_A Neurofibromin; SEC lipi 99.4 3.1E-13 1E-17 118.6 5.1 134 25-170 7-144 (256)
7 3peg_A Neurofibromin; SEC14 do 99.2 1E-11 3.4E-16 110.6 3.4 132 28-170 28-163 (290)
8 3sbx_A Putative uncharacterize 25.5 1.3E+02 0.0043 24.2 5.7 45 117-166 139-188 (189)
9 2q3l_A Uncharacterized protein 24.6 97 0.0033 22.8 4.6 82 57-150 32-115 (126)
10 2oo3_A Protein involved in cat 21.0 34 0.0012 29.6 1.4 26 117-142 238-263 (283)
No 1
>1olm_A SEC14-like protein 2; lipid-binding protein, cholesterol biosynthesis, oxidized vitamin E, lipid-binding, transport, transcription regulation; HET: VTQ; 1.95A {Homo sapiens} SCOP: a.5.3.1 b.132.1.1 c.13.1.1 PDB: 1o6u_A* 1olm_E*
Probab=100.00 E-value=8.4e-40 Score=305.85 Aligned_cols=200 Identities=20% Similarity=0.281 Sum_probs=175.6
Q ss_pred CHHHHHHHHHHcCCCCcchh---hhHHHHhcCceEeccCCCCCCCcEEEEccCCCCCC------CHHHHHHHHHHHHHHH
Q 023994 1 MLVESVKWRLEYKPEKIVWE---DVAREAETGKLYRANFCDKLGRPVLIMRPGFQNSS------STEGQIKYLVYCMENA 71 (274)
Q Consensus 1 ML~~~l~WR~~~~~d~i~~~---~v~~~l~~g~~~~~g~~Dk~GrpV~~~r~g~~d~~------~~~~~~r~~v~~~E~~ 71 (274)
||+++++||++++++.+... +..+.+..+ +++| +|++||||+++++|+++++ +.++++|++++++|.+
T Consensus 55 ~l~~~l~wR~~~~~~~i~~~~~~~~~~~~~~~--~~~g-~Dk~GrpV~~~~~g~~d~~~l~~~~~~~~~~r~~~~~~E~~ 131 (403)
T 1olm_A 55 MLRKHVEFRKQKDIDNIISWQPPEVIQQYLSG--GMCG-YDLDGCPVWYDIIGPLDAKGLLFSASKQDLLRTKMRECELL 131 (403)
T ss_dssp HHHHHHHHHHHTTGGGGGGSCCCHHHHHHCCB--EEEE-ECTTSCEEEEEECTTCCHHHHHTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCcccccCCHHHHHHhCCc--eeec-cCCCcCEEEEEecCCCChHHhhccCCHHHHHHHHHHHHHHH
Confidence 78999999999999887532 222333333 3455 8999999999999999864 6789999999999999
Q ss_pred HHhhCC-------CcccEEEEEeCCCCCCCCC---CHHHHHHHHHHHhhhhhhhcCeEEEEcCCCcchhhHHhhhccCCh
Q 023994 72 IMNLNP-------DREQMVWLIDFQGWTMGSV---SVKVTRETANVLQNHYPERLGLAILYNPPKVFESFWTVVKPFLEP 141 (274)
Q Consensus 72 ~~~~~~-------~~~~~v~IiD~~g~sl~~~---~~~~~k~~~~~lq~~yPe~l~~i~IiNaP~~~~~~~~ivk~fl~~ 141 (274)
++.+.. ++.|+++|+|++|++++++ .++.++.++.++|++||+||+++||||+|++|.++|+++||||++
T Consensus 132 ~~~~~~~s~~~g~~v~~~~~I~D~~g~sl~~~~~~~~~~~k~~~~~lq~~YPerl~~i~iiN~P~~f~~i~~~ikpfl~~ 211 (403)
T 1olm_A 132 LQECAHQTTKLGRKVETITIIYDCEGLGLKHLWKPAVEAYGEFLCMFEENYPETLKRLFVVKAPKLFPVAYNLIKPFLSE 211 (403)
T ss_dssp HHHHHHHHHHHTSCCCCEEEEEECTTCCGGGGCHHHHHHHHHHHHHHHHHSTTCEEEEEEESCCTTHHHHHHHHGGGSCH
T ss_pred HHHHHhhHHhhCCcccceEEEEECCCCCHHHHhhHHHHHHHHHHHHHHhhCcHhhCeEEEEeCCHHHHHHHHHHHhhcCH
Confidence 987642 5789999999999999998 467889999999999999999999999999999999999999999
Q ss_pred hhhcceEEecCCChhhHHHHHccCCccCcchhcCCCCCCCCCcHHHHHhhhhchHHHHHHHhcCCCCCCccccccc
Q 023994 142 KTYKKVRFAYSNDPQSQKIMEALFDINKLDSSFGGRSRVGFDYEAFGQLMRADDKKKSDLMNSGCSVPTDHLLVAS 217 (274)
Q Consensus 142 ~t~~KI~~~~~~~~~~~~~L~~~id~~~LP~~~GG~~~~~~~~~~~~~~~~~~d~~~~~~~~~gg~vP~~~~~~~~ 217 (274)
+|++||+|+++ ++.+.|.++||+++||++|||+++++ ++|+.|...++.||++|+++|....
T Consensus 212 ~t~~KI~~~~~---~~~~~L~~~I~~~~LP~~yGG~~~~~-----------~~~~~c~~~i~~gg~vp~~~~~~~~ 273 (403)
T 1olm_A 212 DTRKKIMVLGA---NWKEVLLKHISPDQVPVEYGGTMTDP-----------DGNPKCKSKINYGGDIPRKYYVRDQ 273 (403)
T ss_dssp HHHHTEEECCT---THHHHHTTTSCGGGSBGGGTSSBCCT-----------TCCTTCTTTCBCCCCCCGGGCSCSS
T ss_pred hhhceEEEECh---hHHHHHHhhcChhhCchhhCCCcCCC-----------CCCcccccccccCCCCCcccccCCC
Confidence 99999999976 46789999999999999999999975 7899999999999999999998764
No 2
>3hx3_A Retinaldehyde-binding protein 1; lipid transfer protein, 11-CIS-retinal, bothnia dystrophy, acetylation, cytoplasm, disease mutation; HET: RET; 1.69A {Homo sapiens} PDB: 3hy5_A*
Probab=100.00 E-value=1.3e-38 Score=288.98 Aligned_cols=188 Identities=23% Similarity=0.328 Sum_probs=168.8
Q ss_pred CHHHHHHHHHHcCC--CCcchhhhHHHHhcCceEeccCCCCCCCcEEEEccCCCCCC--CHHHHHHHHHHHHHHHHHhhC
Q 023994 1 MLVESVKWRLEYKP--EKIVWEDVAREAETGKLYRANFCDKLGRPVLIMRPGFQNSS--STEGQIKYLVYCMENAIMNLN 76 (274)
Q Consensus 1 ML~~~l~WR~~~~~--d~i~~~~v~~~l~~g~~~~~g~~Dk~GrpV~~~r~g~~d~~--~~~~~~r~~v~~~E~~~~~~~ 76 (274)
||+++++||++++. +.+.++++.+.++.|..++.+|+|++||||+++++|++++. +..+++|++++++|.++...+
T Consensus 112 ~L~~~l~wR~~~~~~~~~~~~~~i~~~l~~g~~~~l~g~Dk~GrpVii~r~g~~d~~~~~~~~~~r~~~~~lE~~l~~~~ 191 (316)
T 3hx3_A 112 LLRGYVNFRLQYPELFDSLSPEAVRCTIEAGYPGVLSSRDKYGRVVMLFNIENWQSQEITFDEILQAYCFILEKLLENEE 191 (316)
T ss_dssp HHHHHHHHHHHCGGGTTTCCHHHHHHHHHTTSSEECSSCCTTSCEEEEEECTTCCTTTSCHHHHHHHHHHHHHHHTTSHH
T ss_pred HHHHHHHHHHhCchhhcCCCHHHHHHHHHcCCccccCCCCCCCCEEEEEecccCCCCCCCHHHHHHHHHHHHHHHHhccc
Confidence 78999999999973 56667778788899997766669999999999999999986 578999999999999887666
Q ss_pred CCcccEEEEEeCCCCCCCCC---CHHHHHHHHHHHhhhhhhhcCeEEEEcCCCcchhhHHhhhccCChhhhcceEEecCC
Q 023994 77 PDREQMVWLIDFQGWTMGSV---SVKVTRETANVLQNHYPERLGLAILYNPPKVFESFWTVVKPFLEPKTYKKVRFAYSN 153 (274)
Q Consensus 77 ~~~~~~v~IiD~~g~sl~~~---~~~~~k~~~~~lq~~yPe~l~~i~IiNaP~~~~~~~~ivk~fl~~~t~~KI~~~~~~ 153 (274)
.++.|+++|+|++|++++|+ +++.++.++.++|++||++++++||||+|++|.++|+++||||+++|++||+|++++
T Consensus 192 ~~v~g~v~IiD~~g~sl~~~~~~~~~~~k~~~~~lq~~YPerL~~i~iiN~P~~f~~i~~ivkpfl~~kt~~KI~~~~~~ 271 (316)
T 3hx3_A 192 TQINGFCIIENFKGFTMQQAASLRTSDLRKMVDMLQDSFPAWFKAIHFIHQPWYFTTTYNVVKPFLKSKLLERVFVHGDD 271 (316)
T ss_dssp HHHHCEEEEEECTTCCHHHHHHCCHHHHHHHHHHHHTTSTTTEEEEEEESCCTTHHHHHHHHGGGCCHHHHTTEEEEETC
T ss_pred CCcceEEEEEECCCCCHHHhccCChHHHHHHHHHHHHhhhhhhceEEEEeCCHHHHHHHHHHHHhCCHHhhhheEEeCCC
Confidence 67899999999999999874 788999999999999999999999999999999999999999999999999999764
Q ss_pred ChhhHHHHHccCCccCcchhcCCCCCCCCCcHHHHHhhhh
Q 023994 154 DPQSQKIMEALFDINKLDSSFGGRSRVGFDYEAFGQLMRA 193 (274)
Q Consensus 154 ~~~~~~~L~~~id~~~LP~~~GG~~~~~~~~~~~~~~~~~ 193 (274)
.+.|.++||+++||++|||++++ ++++.|++.+..
T Consensus 272 ----~~~L~~~I~~~~LP~eyGG~~~~-~d~~~~~~~l~~ 306 (316)
T 3hx3_A 272 ----LSGFYQEIDENILPSDFGGTLPK-YDGKAVAEQLFG 306 (316)
T ss_dssp ----CHHHHHHSCGGGSBGGGTSSBCC-CCHHHHHHHHC-
T ss_pred ----HHHHHhhCCHhhCcHhhCCCCCC-cChhHHHHHHcC
Confidence 26899999999999999999984 889999987754
No 3
>1r5l_A Alpha-TTP, protein (alpha-tocopherol transfer protein); ataxia with vitamin E deficiency, transport protein; HET: MSE VIV; 1.50A {Homo sapiens} SCOP: a.5.3.1 c.13.1.1 PDB: 1oiz_A* 1oip_A*
Probab=100.00 E-value=5.3e-38 Score=276.89 Aligned_cols=187 Identities=20% Similarity=0.303 Sum_probs=162.8
Q ss_pred CHHHHHHHHHHcCC--CCcchhhhHHHHhcCceEeccCCCCCCCcEEEEccCCCCCC--CHHHHHHHHHHHHHHHHHhhC
Q 023994 1 MLVESVKWRLEYKP--EKIVWEDVAREAETGKLYRANFCDKLGRPVLIMRPGFQNSS--STEGQIKYLVYCMENAIMNLN 76 (274)
Q Consensus 1 ML~~~l~WR~~~~~--d~i~~~~v~~~l~~g~~~~~g~~Dk~GrpV~~~r~g~~d~~--~~~~~~r~~v~~~E~~~~~~~ 76 (274)
||+++++||++++. +.+.++++.+.++.|...+.+|+|++||||+++++|+++++ +..+++|+.++++|.++...+
T Consensus 53 ~l~~~l~wR~~~~~i~~~~~~~~~~~~~~~g~~~~l~g~D~~GrpV~i~~~~~~d~~~~~~~~~~r~~~~~~E~~~~~~~ 132 (262)
T 1r5l_A 53 LLKNYYKWRAECPEISADLHPRSIIGLLKAGYHGVLRSRDPTGSKVLIYRIAHWDPKVFTAYDVFRVSLITSELIVQEVE 132 (262)
T ss_dssp HHHHHHHHHHHCHHHHSCCCGGGTHHHHHTTCEEECSSCCTTCCEEEEEEGGGCCTTTSCHHHHHHHHHHHHHHHTTSHH
T ss_pred HHHHHHHHHHhChHhhhcCChHHHHHHHHcCCccCCCCcCCCCCEEEEEeccccCcccCCHHHHHHHHHHHHHHHHhChh
Confidence 68999999999862 44556677788888987666669999999999999999987 567899999999998877665
Q ss_pred CCcccEEEEEeCCCCCCCCC---CHHHHHHHHHHHhhhhhhhcCeEEEEcCCCcchhhHHhhhccCChhhhcceEEecCC
Q 023994 77 PDREQMVWLIDFQGWTMGSV---SVKVTRETANVLQNHYPERLGLAILYNPPKVFESFWTVVKPFLEPKTYKKVRFAYSN 153 (274)
Q Consensus 77 ~~~~~~v~IiD~~g~sl~~~---~~~~~k~~~~~lq~~yPe~l~~i~IiNaP~~~~~~~~ivk~fl~~~t~~KI~~~~~~ 153 (274)
.++.|+++|+|++|++++|+ +++.++.++.++|++||++++++||||+|++|+++|+++||||+++|++||+|++++
T Consensus 133 ~~~~g~~~I~D~~g~s~~~~~~~~~~~~k~~~~~~q~~yPerl~~i~ivN~P~~f~~~~~~vkpfl~~~t~~Ki~~~~~~ 212 (262)
T 1r5l_A 133 TQRNGIKAIFDLEGWQFSHAFQITPSVAKKIAAVLTDSFPLKVRGIHLINEPVIFHAVFSMIKPFLTEKIKERIHMHGNN 212 (262)
T ss_dssp HHHHCEEEEEECTTCCHHHHHHCCHHHHHHHHHHHHTSSSSCEEEEEEESCCGGGHHHHHHHGGGSCHHHHTTEEECCSS
T ss_pred hcccceEEEEECCCCCHHHHhccCHHHHHHHHHHHHhhCChhhceEEEEeCCHHHHHHHHHHHHhcCHHHHhheEEeCCC
Confidence 56789999999999999885 689999999999999999999999999999999999999999999999999999763
Q ss_pred ChhhHHHHHccCCccCcchhcCCCCCCCCCcHHHHHhh
Q 023994 154 DPQSQKIMEALFDINKLDSSFGGRSRVGFDYEAFGQLM 191 (274)
Q Consensus 154 ~~~~~~~L~~~id~~~LP~~~GG~~~~~~~~~~~~~~~ 191 (274)
+.+.|.++|| ++||++|||+++...++.++|...
T Consensus 213 ---~~~~L~~~i~-~~LP~~yGG~~~~~~~~~~~w~~~ 246 (262)
T 1r5l_A 213 ---YKQSLLQHFP-DILPLEYGGEEFSMEDICQEWTNF 246 (262)
T ss_dssp ---CHHHHHHHST-TTSCGGGTCSSCCHHHHHHHHHHH
T ss_pred ---cHHHHHHHhh-hhCcHhhCCCCCCHHHHHHHHHHH
Confidence 4689999999 999999999998655555455433
No 4
>3q8g_A CRAL-TRIO domain-containing protein YKL091C; string motif, signaling protein, directed evoluti SEC14, phospholipid transporter, lipid; HET: PEE; 1.80A {Saccharomyces cerevisiae} PDB: 3b7n_A* 3b74_A* 3b7q_A* 3b7z_A*
Probab=100.00 E-value=4.1e-37 Score=279.51 Aligned_cols=208 Identities=24% Similarity=0.326 Sum_probs=165.9
Q ss_pred CHHHHHHHHHHcCCCCcchhh---------hHHH-HhcCceEeccCCCCCCCcEEEEccCCCCCC------CHHHHHHHH
Q 023994 1 MLVESVKWRLEYKPEKIVWED---------VARE-AETGKLYRANFCDKLGRPVLIMRPGFQNSS------STEGQIKYL 64 (274)
Q Consensus 1 ML~~~l~WR~~~~~d~i~~~~---------v~~~-l~~g~~~~~g~~Dk~GrpV~~~r~g~~d~~------~~~~~~r~~ 64 (274)
||+++++||+++++|.+..+. ..+. .+.+..+++| +|++||||+++++|++++. +.+++++++
T Consensus 81 mL~~~l~WRk~~~vd~i~~~~~~~~~~~~~e~~~~~~~~~~~~~g-~Dk~GRpV~i~r~g~~d~~~l~~~~~~~~~lr~l 159 (320)
T 3q8g_A 81 MFVETERWREEYGANTIIEDYENNKEAEDKERIKLAKMYPQYYHH-VDKDGRPLYFAELGGINLKKMYKITTEKQMLRNL 159 (320)
T ss_dssp HHHHHHHHHHHHTGGGHHHHHHHTHHHHHHHHHHHHTTSCEEEEE-ECTTCCEEEEEECTTCCHHHHHHHCCHHHHHHHH
T ss_pred HHHHHHHHHHHcCccccccccccccccchhHHHHHHHhCCceecC-CCCCcCEEEEEeccccCHHHhhccCCHHHHHHHH
Confidence 799999999999999885431 1122 3445567776 8999999999999999874 567889999
Q ss_pred HHHHHHHHHh--------hCCCcccEEEEEeCCCCCCCCCC--HHHHHHHHHHHhhhhhhhcCeEEEEcCCCcchhhHHh
Q 023994 65 VYCMENAIMN--------LNPDREQMVWLIDFQGWTMGSVS--VKVTRETANVLQNHYPERLGLAILYNPPKVFESFWTV 134 (274)
Q Consensus 65 v~~~E~~~~~--------~~~~~~~~v~IiD~~g~sl~~~~--~~~~k~~~~~lq~~yPe~l~~i~IiNaP~~~~~~~~i 134 (274)
++.+|.+++. ....++++++|+|++|+++++++ ++.++.++.++|++||+||+++||||+|++|+++|++
T Consensus 160 v~~~E~~~~~~l~~~s~~~G~~ve~~~~IiD~~g~sl~~~~~~~~~~k~~~~~lq~~YPerl~~i~iiN~P~~f~~~~~~ 239 (320)
T 3q8g_A 160 VKEYELFATYRVPACSRRAGYLIETSCTVLDLKGISLSNAYHVLSYIKDVADISQNYYPERMGKFYIIHSPFGFSTMFKM 239 (320)
T ss_dssp HHHHHHHHHTHHHHHHHHHTSCCCCEEEEEECTTCCHHHHHHTHHHHHHHHHHHHHHSTTCEEEEEEESCCTTHHHHHTT
T ss_pred HHHHHHHHHHhhhHHHHhcCCCcceeEEEEECCCCCHHHHHHHHHHHHHHHHHHHhhCchhhceEEEECCCHHHHHHHHH
Confidence 9999987642 12356889999999999999874 6789999999999999999999999999999999999
Q ss_pred hhccCChhhhcceEEecCCChhhHHHHHccCCccCcchhcCCCCCCCCCcHHHHHhh-hhchHHH-HHHHhcCCCCCCcc
Q 023994 135 VKPFLEPKTYKKVRFAYSNDPQSQKIMEALFDINKLDSSFGGRSRVGFDYEAFGQLM-RADDKKK-SDLMNSGCSVPTDH 212 (274)
Q Consensus 135 vk~fl~~~t~~KI~~~~~~~~~~~~~L~~~id~~~LP~~~GG~~~~~~~~~~~~~~~-~~~d~~~-~~~~~~gg~vP~~~ 212 (274)
+||||+++|++||+|++++ +.+.|.++||+++||++|||++++.. ++ ..++ .+..|.- +.+++.+|++|+++
T Consensus 240 ikpfl~~~t~~KI~~~~~~---~~~~L~~~i~~~~LP~~yGG~~~~~~-~~--ggc~~~~~gpw~~~~~~~~~~~~~~~~ 313 (320)
T 3q8g_A 240 VKPFLDPVTVSKIFILGSS---YKKELLKQIPIENLPVKYGGTSVLHN-PN--DKFYYSDIGPWRDPRYIGPEGEIPNIF 313 (320)
T ss_dssp TGGGSCHHHHHTEEECCTT---HHHHHHHHSCGGGSBGGGTSCBCCSS-TT--SCGGGBCBSGGGCTTTCCTTCCCCCTT
T ss_pred HHHhCCHHHhhhEEEeCCC---cHHHHHhhCChhhCChhhCCCCCCCC-CC--CCeecCCCCCCCChhhcCCCCccCccc
Confidence 9999999999999999864 56899999999999999999999841 00 0011 1111111 23567778888887
Q ss_pred ccc
Q 023994 213 LLV 215 (274)
Q Consensus 213 ~~~ 215 (274)
+..
T Consensus 314 ~~~ 316 (320)
T 3q8g_A 314 GKF 316 (320)
T ss_dssp GGG
T ss_pred ccC
Confidence 765
No 5
>1aua_A Phosphatidylinositol transfer protein SEC14P; phospholipid-binding protein, peripheral golgi membrane protein, phospholipid exchange; HET: BOG; 2.50A {Saccharomyces cerevisiae} SCOP: a.5.3.1 c.13.1.1
Probab=100.00 E-value=5.9e-36 Score=268.81 Aligned_cols=177 Identities=30% Similarity=0.423 Sum_probs=151.7
Q ss_pred CHHHHHHHHHHcCCCCcchh-h--hHHHHhc-CceEeccCCCCCCCcEEEEccCCCCCC------CHHHHHHHHHHHHHH
Q 023994 1 MLVESVKWRLEYKPEKIVWE-D--VAREAET-GKLYRANFCDKLGRPVLIMRPGFQNSS------STEGQIKYLVYCMEN 70 (274)
Q Consensus 1 ML~~~l~WR~~~~~d~i~~~-~--v~~~l~~-g~~~~~g~~Dk~GrpV~~~r~g~~d~~------~~~~~~r~~v~~~E~ 70 (274)
||+++++||++++++.+..+ + ..+.+.. ...+++| +|++||||+++++|++++. +.+++++++++.+|.
T Consensus 72 ~l~~~l~wR~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g-~Dk~GrpV~i~~~g~~d~~~~~~~~~~~~~~~~~~~~~E~ 150 (296)
T 1aua_A 72 MFENCEKWRKDYGTDTILQDFHYDEKPLIAKFYPQYYHK-TDKDGRPVYFEELGAVNLHEMNKVTSEERMLKNLVWEYES 150 (296)
T ss_dssp HHHHHHHHHHHHTGGGHHHHCCCTTHHHHGGGSCCEEEE-ECTTSCEEEEECGGGCCHHHHTTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcchhhhccccCcHHHHHHhCCceecc-cCCCCCEEEEEeeccCChHHhhccCCHHHHHHHHHHHHHH
Confidence 78999999999999887543 1 1223322 2335565 8999999999999998753 678899999999998
Q ss_pred HHHhh--------CCCcccEEEEEeCCCCCCCCCC--HHHHHHHHHHHhhhhhhhcCeEEEEcCCCcchhhHHhhhccCC
Q 023994 71 AIMNL--------NPDREQMVWLIDFQGWTMGSVS--VKVTRETANVLQNHYPERLGLAILYNPPKVFESFWTVVKPFLE 140 (274)
Q Consensus 71 ~~~~~--------~~~~~~~v~IiD~~g~sl~~~~--~~~~k~~~~~lq~~yPe~l~~i~IiNaP~~~~~~~~ivk~fl~ 140 (274)
+++.. ..+++++++|+|++|++++|++ ++.++.++.++|++||+||+++||||+|++|+++|+++||||+
T Consensus 151 ~~~~~~~~~s~~~g~~v~~~~~I~D~~g~s~~~~~~~~~~~k~~~~~~q~~YPerl~~i~iiN~P~~f~~~~~iikpfl~ 230 (296)
T 1aua_A 151 VVQYRLPACSRAAGHLVETSCTIMDLKGISISSAYSVMSYVREASYISQNYYPERMGKFYIINAPFGFSTAFRLFKPFLD 230 (296)
T ss_dssp HHHTHHHHHHHHHTSCCCCEEEEEECTTCCHHHHHHHHHHHHHHHHHHHHHSTTCEEEEEEESCCHHHHHHHHHHGGGSC
T ss_pred HHHHHHHHHHHhcCCCceeEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHhHHHhhCeEEEECchHHHHHHHHHHHhhcC
Confidence 77542 2457899999999999999885 6789999999999999999999999999999999999999999
Q ss_pred hhhhcceEEecCCChhhHHHHHccCCccCcchhcCCCCCCC
Q 023994 141 PKTYKKVRFAYSNDPQSQKIMEALFDINKLDSSFGGRSRVG 181 (274)
Q Consensus 141 ~~t~~KI~~~~~~~~~~~~~L~~~id~~~LP~~~GG~~~~~ 181 (274)
++|++||+|++++ +.+.|.++||+++||++|||++++.
T Consensus 231 ~~t~~KI~~~~~~---~~~~L~~~i~~~~LP~~yGG~~~~~ 268 (296)
T 1aua_A 231 PVTVSKIFILGSS---YQKELLKQIPAENLPVKFGGKSEVD 268 (296)
T ss_dssp HHHHTTEEECCSC---CHHHHTTTSCSSSSBGGGTSCBCCC
T ss_pred HhhcceEEEeCcc---cHHHHHhhCCHhhCcHHhCCCCCCC
Confidence 9999999999874 5788999999999999999999875
No 6
>3pg7_A Neurofibromin; SEC lipid binding domain, PH domain, lipid binding protein; HET: PTY; 2.19A {Homo sapiens} PDB: 2e2x_A* 3p7z_A* 2d4q_A*
Probab=99.37 E-value=3.1e-13 Score=118.58 Aligned_cols=134 Identities=10% Similarity=0.085 Sum_probs=106.0
Q ss_pred HHhcCceEeccCCCCCCCcEEEEccCCCCCCC--HHHHHHHHHHHHHHHHHhhCCCcccEEEEEeCCCCCCCC-CCHHHH
Q 023994 25 EAETGKLYRANFCDKLGRPVLIMRPGFQNSSS--TEGQIKYLVYCMENAIMNLNPDREQMVWLIDFQGWTMGS-VSVKVT 101 (274)
Q Consensus 25 ~l~~g~~~~~g~~Dk~GrpV~~~r~g~~d~~~--~~~~~r~~v~~~E~~~~~~~~~~~~~v~IiD~~g~sl~~-~~~~~~ 101 (274)
.-+.+.+|..| .|++||||+++.++++++.. .+.++.+++..++... ....++|+|++|++..+ .+.+++
T Consensus 7 i~~~~ify~~G-~d~dGrpViv~~~~~l~~~~~D~e~Ll~~vl~tl~~~~------~~~y~lV~d~T~~~~~n~p~~~wl 79 (256)
T 3pg7_A 7 LKTLSIFYQAG-TSKAGNPIFYYVARRFKTGQINGDLLIYHVLLTLKPYY------AKPYEIVVDLTHTGPSNRFKTDFL 79 (256)
T ss_dssp HHHHTSEEEEE-ECTTSCEEEEEEGGGCCBTTBCHHHHHHHHHHHHTTTT------TSCEEEEEECTTCCGGGCCCHHHH
T ss_pred HHHcCCEEEcC-cCCCCCEEEEEEeecCCCCCCCHHHHHHHHHHHHHHhc------CCCeEEEEECCCCCcccCCcHHHH
Confidence 33457777665 89999999999999998653 3444444444443222 36799999999999865 478999
Q ss_pred HHHHHHHhhhhhhhcCeEEEEcCCCcchhhHHh-hhccCChhhhcceEEecCCChhhHHHHHccCCccCc
Q 023994 102 RETANVLQNHYPERLGLAILYNPPKVFESFWTV-VKPFLEPKTYKKVRFAYSNDPQSQKIMEALFDINKL 170 (274)
Q Consensus 102 k~~~~~lq~~yPe~l~~i~IiNaP~~~~~~~~i-vk~fl~~~t~~KI~~~~~~~~~~~~~L~~~id~~~L 170 (274)
+.+.+++...|..+++++||+||+++|...++. .++|.+.+..+|++++++ ..+|.++|+.++|
T Consensus 80 ~~~~~llp~~~~kNlk~~Yivnpt~~~k~~~~~~~~~~~~~k~~~Ki~fv~s-----l~eL~~~i~~~~L 144 (256)
T 3pg7_A 80 SKWFVVFPGFAYDNVSAVYIYNCNSWVREYTKYHERLLTGLKGSKRLVFIDC-----PGKLAEHIEHEQQ 144 (256)
T ss_dssp HHTTTSSCHHHHHTEEEEEEESCCHHHHHHHHHTHHHHTTTTTCTTEEEESS-----TTGGGGTSCGGGC
T ss_pred HHHHHHcCHHHHhcccEEEEECCCHHHHHHHHHHhccccccccCCcEEEECC-----HHHHHhhcCHHHc
Confidence 999999999999999999999999999977665 466777788899999977 4788999987765
No 7
>3peg_A Neurofibromin; SEC14 domain, pleckstrin homology domain, PH domain, phosphatidylethanolamin binding, lipid binding, lipid bindi protein; HET: PEV; 2.52A {Homo sapiens}
Probab=99.16 E-value=1e-11 Score=110.63 Aligned_cols=132 Identities=9% Similarity=0.054 Sum_probs=94.8
Q ss_pred cCceEeccCCCCCCCcEEEEccCCCCCCC--HHHHHHHHHHHHHHHHHhhCCCcccEEEEEeCCCCCCCC-CCHHHHHHH
Q 023994 28 TGKLYRANFCDKLGRPVLIMRPGFQNSSS--TEGQIKYLVYCMENAIMNLNPDREQMVWLIDFQGWTMGS-VSVKVTRET 104 (274)
Q Consensus 28 ~g~~~~~g~~Dk~GrpV~~~r~g~~d~~~--~~~~~r~~v~~~E~~~~~~~~~~~~~v~IiD~~g~sl~~-~~~~~~k~~ 104 (274)
.+.++.++|.|++|+||+++.+++++... .+.++-+++..++... ...+++|+|+++++..+ .+.++++.+
T Consensus 28 ~~~~f~~~g~d~dG~PViv~~~~~~~~~~~D~e~Lly~il~tl~~~~------~~~y~lV~D~T~~~~~n~p~~~~l~~~ 101 (290)
T 3peg_A 28 TLSIFYQAGTSKAGNPIFYYVARRFKTGQINGDLLIYHVLLTLKPYY------AKPYEIVVDLTHTGPSNRFKTDFLSKW 101 (290)
T ss_dssp GTTTEEEEEECTTSCEEEEEEGGGCCBTTBCHHHHHHHHHHHHTTTT------TSCEEEEEECTTCCGGGCCCHHHHGGG
T ss_pred cCCeEEEeccCCCCCEEEEEEeecCCccCCCHHHHHHHHHHHHHHhc------CCCeEEEEEcCCCCccCCChHHHHHHH
Confidence 44455666689999999999999998653 3333333333333221 36899999999999865 578999999
Q ss_pred HHHHhhhhhhhcCeEEEEcCCCcchhhH-HhhhccCChhhhcceEEecCCChhhHHHHHccCCccCc
Q 023994 105 ANVLQNHYPERLGLAILYNPPKVFESFW-TVVKPFLEPKTYKKVRFAYSNDPQSQKIMEALFDINKL 170 (274)
Q Consensus 105 ~~~lq~~yPe~l~~i~IiNaP~~~~~~~-~ivk~fl~~~t~~KI~~~~~~~~~~~~~L~~~id~~~L 170 (274)
.+++...|+.+++++||+|||.+|...+ ...+++.+.+..+|+.++..- ..|..+++++++
T Consensus 102 ~~llp~~~~kNl~~~Yi~np~~~f~~~~k~~~~~~~~~k~~~k~v~~~~~-----~~L~~~i~~~~~ 163 (290)
T 3peg_A 102 FVVFPGFAYDNVSAVYIYNCNSWVREYTKYHERLLTGLKGSKRLVFIDCP-----GKLAEHIEHEQQ 163 (290)
T ss_dssp GTSSCHHHHHTEEEEEEESCCHHHHHHHHHTTTTGGGGTTCTTEEEESSS-----CC----------
T ss_pred HHHCCHHHHhhccEEEEECCCHHHHHHHHHHHhhhhhhhcCceEEEcCCH-----HHHHhhCCHHHh
Confidence 9999999999999999999999988754 577788888899999988653 347888877643
No 8
>3sbx_A Putative uncharacterized protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: AMP; 2.50A {Mycobacterium marinum M}
Probab=25.52 E-value=1.3e+02 Score=24.23 Aligned_cols=45 Identities=4% Similarity=0.068 Sum_probs=34.7
Q ss_pred CeEEEEcCCCcchhhHHhhh-----ccCChhhhcceEEecCCChhhHHHHHccCC
Q 023994 117 GLAILYNPPKVFESFWTVVK-----PFLEPKTYKKVRFAYSNDPQSQKIMEALFD 166 (274)
Q Consensus 117 ~~i~IiNaP~~~~~~~~ivk-----~fl~~~t~~KI~~~~~~~~~~~~~L~~~id 166 (274)
+-|+++|..-+++-++.+++ .|+++.-++.+++..+ .+++.+++.
T Consensus 139 kPvvlln~~gfw~~l~~~l~~~~~~Gfi~~~~~~~i~~~d~-----~ee~~~~l~ 188 (189)
T 3sbx_A 139 KSIVVLDPWGHFDGLRAWLSELADTGYVSRTAMERLIVVDN-----LDDALQACA 188 (189)
T ss_dssp CCEEEECTTCTTHHHHHHHHHHHHTTSSCHHHHHHEEEESS-----HHHHHHHHC
T ss_pred CCEEEecCCccchHHHHHHHHHHHCCCCCHHHcCeEEEeCC-----HHHHHHHhc
Confidence 68999999888887776554 5899999999999865 466665543
No 9
>2q3l_A Uncharacterized protein; SPOIIAA-like fold, structural genomics, joint center for STR genomics, JCSG, protein structure initiative; HET: MSE; 2.25A {Shewanella loihica pv-4} SCOP: c.13.2.2
Probab=24.61 E-value=97 Score=22.83 Aligned_cols=82 Identities=16% Similarity=0.169 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHHHHHHHhhCCCccc--EEEEEeCCCCCCCCCCHHHHHHHHHHHhhhhhhhcCeEEEEcCCCcchhhHHh
Q 023994 57 TEGQIKYLVYCMENAIMNLNPDREQ--MVWLIDFQGWTMGSVSVKVTRETANVLQNHYPERLGLAILYNPPKVFESFWTV 134 (274)
Q Consensus 57 ~~~~~r~~v~~~E~~~~~~~~~~~~--~v~IiD~~g~sl~~~~~~~~k~~~~~lq~~yPe~l~~i~IiNaP~~~~~~~~i 134 (274)
.+++.. ++-.+|..+.. ... +.+++|++. +...++..+-.=++.--.|. ..++|+-||-.+.+...+-++
T Consensus 32 ~~d~~~-l~~~l~~~l~~----~~~~~i~ll~~~~~--f~G~~~~a~~~d~k~~~~h~-~~~~RiAvV~d~~W~~~~~~~ 103 (126)
T 2q3l_A 32 HEDYEQ-MTPLLESALAG----IKTPEIVALIDITE--LDGLSLHAAWDDLKLGLKHG-KEFKRVAIIGQGELQEWATRV 103 (126)
T ss_dssp HHHHHH-HHHHHHHHTTT----CCSSCEEEEEEEEE--EEEECHHHHHHHHHHHHHHG-GGEEEEEEECCSHHHHHHHHH
T ss_pred HHHHHH-HHHHHHHHHHh----CCCceEEEEEEecC--CCCCCHHHHHHHHHhhhhHH-hcCCEEEEEcChHHHHHHHHH
Confidence 455544 55556655543 233 666666543 23333554444344323443 788999999999999999999
Q ss_pred hhccCChhhhcceEEe
Q 023994 135 VKPFLEPKTYKKVRFA 150 (274)
Q Consensus 135 vk~fl~~~t~~KI~~~ 150 (274)
..+|++. .++++
T Consensus 104 ~~~~~~~----evk~F 115 (126)
T 2q3l_A 104 ANWFTPG----EFKFF 115 (126)
T ss_dssp HHHHCSS----EEEEE
T ss_pred HhhccCC----ceecc
Confidence 9998664 45555
No 10
>2oo3_A Protein involved in catabolism of external DNA; structural genomics, unknown function, PSI-2, protein structure initiative; 2.00A {Legionella pneumophila subsp} SCOP: c.66.1.59
Probab=21.03 E-value=34 Score=29.62 Aligned_cols=26 Identities=27% Similarity=0.194 Sum_probs=20.9
Q ss_pred CeEEEEcCCCcchhhHHhhhccCChh
Q 023994 117 GLAILYNPPKVFESFWTVVKPFLEPK 142 (274)
Q Consensus 117 ~~i~IiNaP~~~~~~~~ivk~fl~~~ 142 (274)
..++||||||-+....+-+-|+|.+.
T Consensus 238 sGm~viNpP~~l~~~~~~~l~~l~~~ 263 (283)
T 2oo3_A 238 CGLWIINPPYTFPSEIKLVLETLTTY 263 (283)
T ss_dssp EEEEEESCCTTHHHHHHHHHHHHHHH
T ss_pred eeEEEECCchhHHHHHHHHHHHHHHH
Confidence 36999999999998888777776553
Done!