Query 023995
Match_columns 274
No_of_seqs 183 out of 793
Neff 6.1
Searched_HMMs 46136
Date Fri Mar 29 08:09:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023995.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023995hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF00544 Pec_lyase_C: Pectate 100.0 7E-56 1.5E-60 390.4 13.3 182 2-191 10-200 (200)
2 smart00656 Amb_all Amb_all dom 100.0 1.1E-53 2.3E-58 373.8 21.4 176 2-194 3-189 (190)
3 COG3866 PelB Pectate lyase [Ca 100.0 1.6E-53 3.4E-58 388.8 22.1 230 7-267 95-343 (345)
4 TIGR03805 beta_helix_1 paralle 98.7 2.6E-06 5.7E-11 80.2 20.5 216 6-237 24-286 (314)
5 PF13229 Beta_helix: Right han 98.2 1.5E-05 3.3E-10 64.8 11.0 133 31-195 2-138 (158)
6 PF14592 Chondroitinas_B: Chon 98.0 0.0001 2.2E-09 72.0 13.8 174 15-193 44-256 (425)
7 PLN02218 polygalacturonase ADP 98.0 0.00013 2.8E-09 71.7 13.4 97 72-172 241-341 (431)
8 PLN03003 Probable polygalactur 97.9 0.00022 4.7E-09 70.5 13.9 83 71-157 186-269 (456)
9 PLN02188 polygalacturonase/gly 97.8 0.00031 6.8E-09 68.5 13.6 82 72-157 204-286 (404)
10 TIGR03805 beta_helix_1 paralle 97.8 0.0012 2.7E-08 62.1 16.3 164 9-177 58-248 (314)
11 PLN02155 polygalacturonase 97.8 0.00026 5.7E-09 68.8 12.0 98 71-172 193-295 (394)
12 PLN02793 Probable polygalactur 97.7 0.00044 9.5E-09 68.2 12.5 121 32-157 180-308 (443)
13 PF13229 Beta_helix: Right han 97.7 0.00056 1.2E-08 55.5 11.1 131 29-191 23-158 (158)
14 PLN03010 polygalacturonase 97.7 0.0016 3.4E-08 63.8 15.5 97 71-172 205-306 (409)
15 PF00295 Glyco_hydro_28: Glyco 97.6 0.00056 1.2E-08 64.6 10.7 83 71-157 140-223 (326)
16 PF01696 Adeno_E1B_55K: Adenov 97.2 0.012 2.6E-07 56.9 15.3 156 4-196 76-242 (386)
17 PF05048 NosD: Periplasmic cop 97.2 0.01 2.2E-07 52.8 13.3 131 30-194 36-168 (236)
18 PLN02155 polygalacturonase 97.2 0.011 2.4E-07 57.6 14.2 109 32-170 148-268 (394)
19 TIGR03808 RR_plus_rpt_1 twin-a 97.1 0.0094 2E-07 58.7 13.6 43 7-49 81-126 (455)
20 TIGR03808 RR_plus_rpt_1 twin-a 97.1 0.026 5.7E-07 55.7 16.6 67 31-120 137-203 (455)
21 PF05048 NosD: Periplasmic cop 97.1 0.021 4.6E-07 50.7 14.8 108 30-170 58-167 (236)
22 PLN02218 polygalacturonase ADP 97.0 0.022 4.7E-07 56.2 15.0 85 32-146 195-284 (431)
23 PF12708 Pectate_lyase_3: Pect 96.9 0.014 3.1E-07 50.3 11.5 156 4-195 44-221 (225)
24 PLN03010 polygalacturonase 96.9 0.056 1.2E-06 53.0 16.3 73 32-127 160-237 (409)
25 PLN03003 Probable polygalactur 96.8 0.02 4.4E-07 56.7 12.3 86 31-146 140-230 (456)
26 PF00295 Glyco_hydro_28: Glyco 96.7 0.023 5E-07 53.7 11.7 108 9-146 62-184 (326)
27 PLN02188 polygalacturonase/gly 96.6 0.031 6.7E-07 54.7 12.0 134 32-197 158-313 (404)
28 PLN02793 Probable polygalactur 96.3 0.059 1.3E-06 53.4 12.4 63 75-146 202-269 (443)
29 smart00656 Amb_all Amb_all dom 96.1 0.23 4.9E-06 43.6 13.8 115 74-195 32-167 (190)
30 PF12708 Pectate_lyase_3: Pect 96.1 0.029 6.2E-07 48.5 8.0 105 31-150 114-221 (225)
31 PLN02480 Probable pectinestera 95.9 0.11 2.3E-06 50.0 11.6 101 2-118 79-198 (343)
32 COG5434 PGU1 Endopygalactoruna 95.1 0.099 2.2E-06 52.9 8.6 101 33-157 265-376 (542)
33 PLN02682 pectinesterase family 94.3 4.1 8.9E-05 39.6 17.3 86 2-100 101-214 (369)
34 PLN03043 Probable pectinestera 93.8 1.5 3.3E-05 44.6 13.7 97 2-116 257-392 (538)
35 PLN02432 putative pectinestera 93.7 0.74 1.6E-05 43.3 10.6 103 2-127 42-162 (293)
36 PLN02416 probable pectinestera 93.6 0.62 1.3E-05 47.4 10.6 81 2-100 261-363 (541)
37 PLN02488 probable pectinestera 93.3 2.6 5.7E-05 42.5 14.4 97 2-116 228-363 (509)
38 PF07602 DUF1565: Protein of u 93.2 2.3 5E-05 39.1 12.8 91 8-117 47-162 (246)
39 PLN02773 pectinesterase 93.1 0.95 2.1E-05 43.0 10.5 82 2-101 36-149 (317)
40 PF00544 Pec_lyase_C: Pectate 93.1 2.4 5.1E-05 37.4 12.4 115 30-168 76-200 (200)
41 PLN02995 Probable pectinestera 92.8 0.91 2E-05 46.2 10.4 82 2-101 256-359 (539)
42 PLN02217 probable pectinestera 92.6 2.8 6E-05 43.8 13.8 148 2-169 281-484 (670)
43 PLN02197 pectinesterase 92.5 2.9 6.2E-05 43.1 13.6 81 2-100 306-410 (588)
44 PLN02170 probable pectinestera 92.5 1.2 2.7E-05 45.1 10.9 81 2-100 257-359 (529)
45 PLN02713 Probable pectinestera 92.4 1.2 2.5E-05 45.6 10.6 81 2-100 284-386 (566)
46 PLN02176 putative pectinestera 92.3 1.9 4.1E-05 41.4 11.4 101 2-117 70-188 (340)
47 PLN02990 Probable pectinestera 92.2 3.7 8.1E-05 42.1 14.0 97 2-116 290-426 (572)
48 PLN02708 Probable pectinestera 92.2 1.2 2.6E-05 45.5 10.4 81 2-100 273-376 (553)
49 PLN02201 probable pectinestera 92.0 1.4 3E-05 44.6 10.6 82 2-101 237-340 (520)
50 PLN02484 probable pectinestera 91.9 3.5 7.6E-05 42.4 13.5 97 2-116 303-439 (587)
51 PLN02933 Probable pectinestera 91.8 1.5 3.4E-05 44.4 10.7 81 2-100 249-351 (530)
52 PLN02304 probable pectinestera 91.8 1.8 3.9E-05 42.2 10.7 118 2-145 106-245 (379)
53 PLN02745 Putative pectinestera 91.6 1.6 3.5E-05 44.9 10.6 81 2-100 316-418 (596)
54 PLN02634 probable pectinestera 91.4 2.5 5.5E-05 40.9 11.2 100 2-117 87-214 (359)
55 PLN02506 putative pectinestera 91.4 1.8 4E-05 44.0 10.7 82 2-101 263-366 (537)
56 PLN02314 pectinesterase 91.4 3.7 8.1E-05 42.2 13.0 97 2-116 309-444 (586)
57 PLN02916 pectinesterase family 91.2 1.8 4E-05 43.6 10.4 82 2-101 221-324 (502)
58 PLN02313 Pectinesterase/pectin 90.9 4.3 9.3E-05 41.8 12.9 125 2-145 306-474 (587)
59 PLN02665 pectinesterase family 90.8 17 0.00036 35.4 16.6 87 2-101 99-206 (366)
60 PF14592 Chondroitinas_B: Chon 90.6 0.69 1.5E-05 45.6 6.6 60 137-197 246-325 (425)
61 PLN02468 putative pectinestera 90.2 2.2 4.9E-05 43.6 10.2 81 2-100 289-391 (565)
62 PLN02301 pectinesterase/pectin 90.1 2.1 4.6E-05 43.6 9.8 81 2-100 267-369 (548)
63 PLN02671 pectinesterase 90.1 3.5 7.7E-05 39.9 10.9 99 2-117 90-218 (359)
64 COG5434 PGU1 Endopygalactoruna 88.4 2.8 6E-05 42.7 9.2 95 31-149 289-398 (542)
65 PLN02497 probable pectinestera 86.0 33 0.00073 32.9 17.0 88 2-100 63-168 (331)
66 COG3866 PelB Pectate lyase [Ca 85.6 5.9 0.00013 37.7 9.0 118 73-193 116-250 (345)
67 PRK10531 acyl-CoA thioesterase 85.5 10 0.00023 37.5 11.1 52 36-100 204-256 (422)
68 COG3420 NosD Nitrous oxidase a 84.9 31 0.00067 33.5 13.5 73 29-117 120-192 (408)
69 PF08480 Disaggr_assoc: Disagg 84.6 25 0.00054 31.2 11.9 87 106-194 2-109 (198)
70 PF01095 Pectinesterase: Pecti 84.5 5.3 0.00011 37.6 8.3 100 7-127 41-156 (298)
71 PF03211 Pectate_lyase: Pectat 79.1 15 0.00033 33.1 8.9 109 2-121 15-144 (215)
72 PF12541 DUF3737: Protein of u 71.5 61 0.0013 30.3 10.9 60 36-124 17-76 (277)
73 COG3420 NosD Nitrous oxidase a 57.6 1.9E+02 0.0042 28.2 13.1 18 31-49 71-88 (408)
74 PRK10123 wcaM putative colanic 52.1 30 0.00065 33.0 5.2 56 33-99 263-318 (464)
75 PLN02698 Probable pectinestera 50.2 87 0.0019 31.7 8.6 52 31-100 264-316 (497)
76 TIGR03804 para_beta_helix para 45.8 39 0.00084 21.9 3.7 39 76-116 2-40 (44)
77 PF08480 Disaggr_assoc: Disagg 41.2 1.6E+02 0.0034 26.3 7.7 74 79-153 31-113 (198)
78 PF12541 DUF3737: Protein of u 39.6 3.3E+02 0.0071 25.6 10.1 109 34-170 94-224 (277)
79 PRK03174 sspH acid-soluble spo 32.0 51 0.0011 23.8 2.7 18 73-90 13-31 (59)
80 PF07602 DUF1565: Protein of u 30.6 2.9E+02 0.0063 25.4 8.1 71 29-121 114-191 (246)
81 PRK01625 sspH acid-soluble spo 29.0 62 0.0013 23.3 2.7 18 73-90 13-31 (59)
82 KOG1777 Putative Zn-finger pro 27.9 40 0.00087 33.9 2.1 45 3-50 468-513 (625)
83 TIGR02861 SASP_H small acid-so 25.2 78 0.0017 22.7 2.7 18 73-90 13-31 (58)
84 PF01696 Adeno_E1B_55K: Adenov 25.1 2.9E+02 0.0062 27.2 7.4 78 104-193 119-199 (386)
85 smart00710 PbH1 Parallel beta- 22.3 99 0.0021 16.5 2.3 14 83-96 3-16 (26)
86 PF06355 Aegerolysin: Aegeroly 22.2 3.8E+02 0.0082 22.2 6.6 71 37-113 14-88 (131)
87 PF08141 SspH: Small acid-solu 20.5 1.2E+02 0.0026 21.7 2.8 18 73-90 13-31 (58)
No 1
>PF00544 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pectate lyase 4.2.2.2 from EC is an enzyme involved in the maceration and soft rotting of plant tissue. Pectate lyase is responsible for the eliminative cleavage of pectate, yielding oligosaccharides with 4-deoxy-alpha-D-mann-4-enuronosyl groups at their non-reducing ends. The protein is maximally expressed late in pollen development. It has been suggested that the pollen expression of pectate lyase genes might relate to a requirement for pectin degradation during pollen tube growth []. The structure and the folding kinetics of one member of this family, pectate lyase C (pelC)1 from Erwinia chrysanthemi has been investigated in some detail [,]. PelC contains a parallel beta-helix folding motif. The majority of the regular secondary structure is composed of parallel beta-sheets (about 30%). The individual strands of the sheets are connected by unordered loops of varying length. The backbone is then formed by a large helix composed of beta-sheets. There are two disulphide bonds in pelC and 12 proline residues. One of these prolines, Pro220, is involved in a cis peptide bond. he folding mechanism of pelC involves two slow phases that have been attributed to proline isomerization. Some of the proteins in this family are allergens. Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Amb a 1, Amb a 2, Amb a 3, Cha o 1, Cup a 1, Cry j 1, Jun a 1. Two of the major allergens in the pollen of short ragweed (Ambrosia artemisiifolia) are Amb aI and Amb aII. The primary structure of Amb aII has been deduced and has been shown to share ~65% sequence identity with the Amb alpha I multigene family of allergens []. Members of the Amb aI/aII family include Nicotiana tabacum (Common tobacco) pectate lyase, which is similar to the deduced amino acid sequences of two pollen-specific pectate lyase genes identified in Solanum lycopersicum (Tomato) (Lycopersicon esculentum) []; Cry jI, a major allergenic glycoprotein of Cryptomeria japonica (Japanese cedar) - the most common pollen allergen in Japan []; and P56 and P59, which share sequence similarity with pectate lyases of plant pathogenic bacteria [].; PDB: 1O8M_A 1O8K_A 1O8E_A 1O8H_A 2PEC_A 1PLU_A 1O8I_A 1O8J_A 1O8D_A 1O8F_A ....
Probab=100.00 E-value=7e-56 Score=390.39 Aligned_cols=182 Identities=41% Similarity=0.649 Sum_probs=153.6
Q ss_pred eEEecceEEcCCCceEEeecCceEEecCCcEEEe-eeceEEEEceEEEecccCCCccccCCCCCCCCccccCCCeEEeeC
Q 023995 2 TIRLKEELIMNSFKTIDGRGASVHIAGGPCITIQ-YVTNIIIHGLNIHDCKKGGNAMVRDSPRHFGWRTVSDGDGVSIFG 80 (274)
Q Consensus 2 ~I~L~~~L~v~snkTI~G~G~~~~i~~G~~l~i~-~~~NVIIrnl~i~~~~~~~~~~~~~~~~~~~~~~~~~~DaI~i~~ 80 (274)
+|+++.+|.|+|||||+|+|++++|. |.++.+. +++|||||||+|+++. ++..|...+.....++|+|++++
T Consensus 10 ~i~~~~~i~v~snkTi~G~g~~~~i~-~~G~~i~~~~~NVIirNl~~~~~~------~~~~~~~~~~~~~~~~Dai~i~~ 82 (200)
T PF00544_consen 10 TIDLKSPISVGSNKTIIGIGAGATII-GGGLRIIKGASNVIIRNLRFRNVP------VDPGPDWSGDGDSSDGDAISIDN 82 (200)
T ss_dssp CCHHHCEEEEESSEEEEEETTTTEEE-SSEEEEEESCEEEEEES-EEECEE------EECSTEEETTEEECS--SEEEES
T ss_pred EEccCCeEEECCCcEEEEccCCeEEE-CceEEEecCCCeEEEECCEEEecc------ccCCcccCCCccccCCCeEEEEe
Confidence 56778999999999999999999999 6788886 8999999999999841 01111111112236899999999
Q ss_pred CeeEEEeceeccCC--------CCCeEEeeeCCceEEEEcceecccCeeeEecCCCcccCCCcceEEEEeeEEcCCCcCC
Q 023995 81 GTHIWVDHCSLSNC--------DDGLVDAIHGSTAITISNNFMTHHDKVMLLGHSDTYTQDKNMQVTIAFNHFGEGLVQR 152 (274)
Q Consensus 81 ~~nVWIDHcs~s~~--------~Dglidv~~~s~~vTvS~~~f~~h~k~~l~G~sd~~~~d~~~~vT~hhN~f~~~~~~R 152 (274)
++|||||||+|+|+ .||++|++.++++||||||+|++|+|+||+|++|....+..+++||||||| +++.+|
T Consensus 83 ~~nVWIDH~sfs~~~~~~~~~~~Dg~idi~~~s~~vTiS~n~f~~~~k~~l~G~~d~~~~~~~~~vT~hhN~f-~~~~~R 161 (200)
T PF00544_consen 83 SSNVWIDHCSFSWGNFECNSDSSDGLIDIKKGSDNVTISNNIFDNHNKTMLIGSSDSNSTDRGLRVTFHHNYF-ANTNSR 161 (200)
T ss_dssp TEEEEEES-EEEETTS-GGGSSSSSSEEEESSTEEEEEES-EEEEEEETCEESSCTTCGGGTTEEEEEES-EE-EEEEE-
T ss_pred cccEEEeccEEeccccccccccCCceEEEEeCCceEEEEchhccccccccccCCCCCccccCCceEEEEeEEE-CchhhC
Confidence 99999999999999 999999999999999999999999999999999887777779999999999 799999
Q ss_pred CceeeccEEEEEcceecCccceEEeeCCCceEEeeccEE
Q 023995 153 IPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRF 191 (274)
Q Consensus 153 ~Pr~R~G~~hv~NN~~~~~~~yaig~~~~~~i~~e~N~F 191 (274)
+||+|+|++|+|||||+++..|+++.++++++++|+|||
T Consensus 162 ~P~~r~G~~Hv~NN~~~~~~~y~i~~~~~a~v~~E~N~F 200 (200)
T PF00544_consen 162 NPRVRFGYVHVYNNYYYNWSGYAIGARSGAQVLVENNYF 200 (200)
T ss_dssp TTEECSCEEEEES-EEEEECSESEEEETTEEEEEES-EE
T ss_pred CCcccccEEEEEEeeeECCCCEEEEccCCeEEEEECcCC
Confidence 999999999999999999999999999999999999999
No 2
>smart00656 Amb_all Amb_all domain.
Probab=100.00 E-value=1.1e-53 Score=373.82 Aligned_cols=176 Identities=57% Similarity=0.869 Sum_probs=162.2
Q ss_pred eEEec--ceEEcCCCceEEeecCceEEecCCcEEEeeeceEEEEceEEEecccCCCccccCCCCCCCCccccCCCeEEee
Q 023995 2 TIRLK--EELIMNSFKTIDGRGASVHIAGGPCITIQYVTNIIIHGLNIHDCKKGGNAMVRDSPRHFGWRTVSDGDGVSIF 79 (274)
Q Consensus 2 ~I~L~--~~L~v~snkTI~G~G~~~~i~~G~~l~i~~~~NVIIrnl~i~~~~~~~~~~~~~~~~~~~~~~~~~~DaI~i~ 79 (274)
+|... .+|.|+|||||+|+|++++|. |.+|.+++++|||||||+|+++.+. . ..++|+|+++
T Consensus 3 ~~~~~~~~~i~v~snkTI~G~~~~~~i~-g~gl~i~~~~NVIirnl~i~~~~~~-----------~----~~~~D~i~~~ 66 (190)
T smart00656 3 TITLDNAGTIIINSNKTIDGRGSKVEIK-GGGLTIKSVSNVIIRNLTIHDPKPV-----------Y----GSDGDAISID 66 (190)
T ss_pred EEEecccceEEeCCCCEEEecCCCcEEE-eeEEEEEecceEEEeCCEEECCccC-----------C----CCCCCEEEEe
Confidence 44444 489999999999999999999 7899998899999999999986543 1 1478999999
Q ss_pred CCeeEEEeceeccCC---------CCCeEEeeeCCceEEEEcceecccCeeeEecCCCcccCCCcceEEEEeeEEcCCCc
Q 023995 80 GGTHIWVDHCSLSNC---------DDGLVDAIHGSTAITISNNFMTHHDKVMLLGHSDTYTQDKNMQVTIAFNHFGEGLV 150 (274)
Q Consensus 80 ~~~nVWIDHcs~s~~---------~Dglidv~~~s~~vTvS~~~f~~h~k~~l~G~sd~~~~d~~~~vT~hhN~f~~~~~ 150 (274)
++++||||||+|+|+ .|+++|++.++++||||||+|.+|+|++|+|++|++..+..++||+||||| .++.
T Consensus 67 ~~~~VwIDHct~s~~~~~~~~~~~~D~~~di~~~s~~vTvs~~~f~~h~~~~liG~~d~~~~~~~~~vT~h~N~~-~~~~ 145 (190)
T smart00656 67 GSSNVWIDHVSLSGCTVTGFGDDTYDGLIDIKNGSTYVTISNNYFHNHWKVMLLGHSDSDTDDGKMRVTIAHNYF-GNLR 145 (190)
T ss_pred CCCeEEEEccEeEcceeccCCCCCCCccEEECcccccEEEECceEecCCEEEEEccCCCccccccceEEEECcEE-cCcc
Confidence 999999999999998 899999999999999999999999999999999987766789999999999 6899
Q ss_pred CCCceeeccEEEEEcceecCccceEEeeCCCceEEeeccEEeCC
Q 023995 151 QRIPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRFAAP 194 (274)
Q Consensus 151 ~R~Pr~R~G~~hv~NN~~~~~~~yaig~~~~~~i~~e~N~F~~~ 194 (274)
+|+||+|+|++|+|||||++|..|+++.+.++++++|+|||+..
T Consensus 146 ~R~P~~r~g~~hv~NN~~~n~~~~~~~~~~~~~v~~E~N~F~~~ 189 (190)
T smart00656 146 QRAPRVRFGYVHVYNNYYTGWTSYAIGGRMGATILSEGNYFEAP 189 (190)
T ss_pred cCCCcccCCEEEEEeeEEeCcccEeEecCCCcEEEEECeEEECC
Confidence 99999999999999999999999999999999999999999875
No 3
>COG3866 PelB Pectate lyase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.6e-53 Score=388.76 Aligned_cols=230 Identities=32% Similarity=0.394 Sum_probs=179.3
Q ss_pred ceEEcCCCceEEeecCceEEecCCcEEEeeeceEEEEceEEEecccCCCccccCCCCCCCCccccCCCeEEe-eCCeeEE
Q 023995 7 EELIMNSFKTIDGRGASVHIAGGPCITIQYVTNIIIHGLNIHDCKKGGNAMVRDSPRHFGWRTVSDGDGVSI-FGGTHIW 85 (274)
Q Consensus 7 ~~L~v~snkTI~G~G~~~~i~~G~~l~i~~~~NVIIrnl~i~~~~~~~~~~~~~~~~~~~~~~~~~~DaI~i-~~~~nVW 85 (274)
.+|++.|||||+|.|+.++|. |.+|.|+.+.|||||||+|++...++ ...|+|+| .+++|||
T Consensus 95 ~~iki~sNkTivG~g~~a~~~-g~gl~i~~a~NVIirNltf~~~~~~d----------------~~~D~Isi~~~~~nIW 157 (345)
T COG3866 95 ITIKIGSNKTIVGSGADATLV-GGGLKIRDAGNVIIRNLTFEGFYQGD----------------PNYDAISIYDDGHNIW 157 (345)
T ss_pred EEEeeccccEEEeeccccEEE-eceEEEEeCCcEEEEeeEEEeeccCC----------------CCCCcEEeccCCeEEE
Confidence 578888999999999999999 67999999999999999999865321 12699999 5789999
Q ss_pred EeceeccC--------CCCCeEEeeeCCceEEEEcceecccCeeeEecCCCc-ccCCCcceEEEEeeEEcCCCcCCCcee
Q 023995 86 VDHCSLSN--------CDDGLVDAIHGSTAITISNNFMTHHDKVMLLGHSDT-YTQDKNMQVTIAFNHFGEGLVQRIPRC 156 (274)
Q Consensus 86 IDHcs~s~--------~~Dglidv~~~s~~vTvS~~~f~~h~k~~l~G~sd~-~~~d~~~~vT~hhN~f~~~~~~R~Pr~ 156 (274)
||||+|+. ..||++|+++++++||||||+|++|+|.+|+|.+|+ +.+|++.+||+||||| +|+.||+||+
T Consensus 158 IDH~tf~~~s~~~~~~h~DGl~Dik~~AnyITiS~n~fhdh~Kssl~G~sD~~~~~~~~~kvT~hhNyF-kn~~qR~Pri 236 (345)
T COG3866 158 IDHNTFSGGSYNASGSHGDGLVDIKKDANYITISYNKFHDHDKSSLLGSSDSSNYDDGKYKVTIHHNYF-KNLYQRGPRI 236 (345)
T ss_pred EEeeEeccccccccccCCCccEEeccCCcEEEEEeeeeecCCeeeeeccCCcccccCCceeEEEecccc-ccccccCCce
Confidence 99999999 789999999999999999999999999999999998 4567899999999999 8999999999
Q ss_pred eccEEEEEcceecCccc--eEEeeCCCceEEeeccEEeCCCCCccceeeecccCCCCccCCceeeeccceEEeceEEeec
Q 023995 157 RHGYFHVVNNDYTHWEM--YAIGGSANPTINSQGNRFAAPDRAFSKEVTKHEDAPESEWRNWNWRSEGDLMVNGAFFTAS 234 (274)
Q Consensus 157 R~G~~hv~NN~~~~~~~--yaig~~~~~~i~~e~N~F~~~~~~~~~~vt~r~~~~~~~~~~~~~~s~gd~~~nG~~~~~s 234 (274)
|||.+|||||||+.... ||++.+..++|++|+|||+....+...--+++. + . .|. +-.|+++..+
T Consensus 237 RfG~vHvyNNYy~~~~~~g~a~~iG~~AkiyvE~NyF~~~~~~~~f~dt~~~--~--G----Y~~-----~d~gsy~~~s 303 (345)
T COG3866 237 RFGMVHVYNNYYEGNPKFGVAITIGTSAKIYVENNYFENGSEGLGFLDTKGT--S--G----YAN-----QDSGSYLNSS 303 (345)
T ss_pred EeeEEEEeccccccCcccceEEeeccceEEEEecceeccCCCCceeeecCCc--c--c----eEE-----eccCceeccc
Confidence 99999999999996654 455545559999999999997544321112111 1 0 111 0345565555
Q ss_pred CCCC------CCCCCCCCccccCC-CcchhceecccCCCC
Q 023995 235 GAGA------SSSYARASSLGARP-SALVGPITGSAGALI 267 (274)
Q Consensus 235 g~~~------~~~y~~~~~~~~~~-~~~v~~~~~~aG~~~ 267 (274)
+... ...++...++.+.| +.+.+.||..||++.
T Consensus 304 ~~~~~~~~G~~w~ps~~Y~Ytvd~~~dVks~Vt~yAGaGk 343 (345)
T COG3866 304 KSMSVRAGGVTWNPSSYYSYTVDPPEDVKSFVTNYAGAGK 343 (345)
T ss_pred CCcccccCCccCCCCCCcccccCChHHhhhhhhcccccee
Confidence 4321 12222233355554 457778899999764
No 4
>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein. Members of this protein family contain a tandem pair of beta-helix repeats (see TIGR03804). Each repeat is expected to consist of three beta strands that form a single turn as they form a right-handed helix of stacked beta-structure. Member proteinsa occur regularly in two-gene pairs along with another uncharacterized protein family; both protein families exhibit either lipoprotein or regular signal peptides, suggesting transit through the plasma membrane, and the two may be fused. The function of the pair is unknown.
Probab=98.71 E-value=2.6e-06 Score=80.17 Aligned_cols=216 Identities=16% Similarity=0.191 Sum_probs=122.7
Q ss_pred cceEEcC-CCceEEeecCc-eEEec------CCcEEEeeeceEEEEceEEEecccCCCccccCCCC------CCCCc---
Q 023995 6 KEELIMN-SFKTIDGRGAS-VHIAG------GPCITIQYVTNIIIHGLNIHDCKKGGNAMVRDSPR------HFGWR--- 68 (274)
Q Consensus 6 ~~~L~v~-snkTI~G~G~~-~~i~~------G~~l~i~~~~NVIIrnl~i~~~~~~~~~~~~~~~~------~~~~~--- 68 (274)
++.|.|. +++||.|.|.. ..|.+ +..|.+ .++||-|++|++++... .+-.++.+.. ...|.
T Consensus 24 ~~~l~I~~~~Iti~G~g~~~tvid~~~~~~~~~~i~v-~a~~VtI~~ltI~~~~~-~GI~v~~s~~i~I~n~~i~~~~~~ 101 (314)
T TIGR03805 24 DRTLSLDADGVTIRGAGMDETILDFSGQVGGAEGLLV-TSDDVTLSDLAVENTKG-DGVKVKGSDGIIIRRLRVEWTGGP 101 (314)
T ss_pred ceeEEEeCCCeEEEecCCCccEEecccCCCCCceEEE-EeCCeEEEeeEEEcCCC-CeEEEeCCCCEEEEeeEEEeccCc
Confidence 3567776 78899888763 34431 223444 57777777777765321 1111111110 00000
Q ss_pred -cccCCCeEEeeCCeeEEEeceeccCCCCCeEEeeeCCceEEEEcceecccCeeeEecCCCcccCCCcceEEEEeeEEcC
Q 023995 69 -TVSDGDGVSIFGGTHIWVDHCSLSNCDDGLVDAIHGSTAITISNNFMTHHDKVMLLGHSDTYTQDKNMQVTIAFNHFGE 147 (274)
Q Consensus 69 -~~~~~DaI~i~~~~nVWIDHcs~s~~~Dglidv~~~s~~vTvS~~~f~~h~k~~l~G~sd~~~~d~~~~vT~hhN~f~~ 147 (274)
.....++|.+..++++-|.+|.++...|--|-+. .+++++|.+|.+.+-..+..+-.+. .+.+.+|.+ .
T Consensus 102 ~~~~~~~GI~~~~s~~v~I~~n~i~g~~d~GIyv~-~s~~~~v~nN~~~~n~~GI~i~~S~--------~~~v~~N~~-~ 171 (314)
T TIGR03805 102 KSSNGAYGIYPVESTNVLVEDSYVRGASDAGIYVG-QSQNIVVRNNVAEENVAGIEIENSQ--------NADVYNNIA-T 171 (314)
T ss_pred cccCCcceEEEeccCCEEEECCEEECCCcccEEEC-CCCCeEEECCEEccCcceEEEEecC--------CcEEECCEE-e
Confidence 0134678888889999999999988877545554 5788999999888666665554443 567777777 3
Q ss_pred CCcCCC-----c---eeeccEEEEEcceecCcc----------------ceEEeeCCCceEEeeccEEeCCCCCccceee
Q 023995 148 GLVQRI-----P---RCRHGYFHVVNNDYTHWE----------------MYAIGGSANPTINSQGNRFAAPDRAFSKEVT 203 (274)
Q Consensus 148 ~~~~R~-----P---r~R~G~~hv~NN~~~~~~----------------~yaig~~~~~~i~~e~N~F~~~~~~~~~~vt 203 (274)
++..=. | .+--..+.++||.+.+-. ..++-......+.+++|.|.....+..--+.
T Consensus 172 ~N~~Gi~v~~~p~~~~~~s~~~~v~~N~i~~n~~~n~~~~gn~v~~~~~g~Gi~i~~~~~v~I~~N~i~~n~~~~i~~~~ 251 (314)
T TIGR03805 172 NNTGGILVFDLPGLPQPGGSNVRVFDNIIFDNNTPNFAPAGSIVASVPAGTGVVVMANRDVEIFGNVISNNDTANVLISS 251 (314)
T ss_pred ccceeEEEeecCCCCcCCccceEEECCEEECCCCCCCcccCCceecCCCCcEEEEEcccceEEECCEEeCCcceeEEEEe
Confidence 332211 1 111236677777775321 1133233346788999999886654322122
Q ss_pred eccc-----CCCCccCCceeeeccceEEeceEEeecCCC
Q 023995 204 KHED-----APESEWRNWNWRSEGDLMVNGAFFTASGAG 237 (274)
Q Consensus 204 ~r~~-----~~~~~~~~~~~~s~gd~~~nG~~~~~sg~~ 237 (274)
+... ..+..|.. . ..++.+-.|.|...|..
T Consensus 252 ~~~~~~~~~~~~~~~~~---~-~~~v~i~~N~~~~~g~~ 286 (314)
T TIGR03805 252 YHSTGLPDQPPDDGFDP---Y-PRNISIHDNTFSDGGTN 286 (314)
T ss_pred cccccCCCCCcCCCccC---C-CcceEEEccEeecCCCC
Confidence 2111 11222322 2 37788999999888763
No 5
>PF13229 Beta_helix: Right handed beta helix region; PDB: 2INV_C 2INU_C 1RU4_A.
Probab=98.23 E-value=1.5e-05 Score=64.76 Aligned_cols=133 Identities=22% Similarity=0.297 Sum_probs=86.0
Q ss_pred cEEEeeeceEEEEceEEEecccCCCccccCCCCCCCCccccCCCeEEeeCCeeEEEeceeccCCCCCeEEeeeCCceEEE
Q 023995 31 CITIQYVTNIIIHGLNIHDCKKGGNAMVRDSPRHFGWRTVSDGDGVSIFGGTHIWVDHCSLSNCDDGLVDAIHGSTAITI 110 (274)
Q Consensus 31 ~l~i~~~~NVIIrnl~i~~~~~~~~~~~~~~~~~~~~~~~~~~DaI~i~~~~nVWIDHcs~s~~~Dglidv~~~s~~vTv 110 (274)
+|.+.+..++.|++.+|++ ...++|.+.++..+.|+.|+|.. ...-+.+. +..++++
T Consensus 2 Gi~i~~~~~~~i~~~~i~~---------------------~~~~gi~~~~~~~~~i~n~~i~~-~~~gi~~~-~~~~~~i 58 (158)
T PF13229_consen 2 GISINNGSNVTIRNCTISN---------------------NGGDGIHVSGSSNITIENCTISN-GGYGIYVS-GGSNVTI 58 (158)
T ss_dssp CEEETTCEC-EEESEEEES---------------------SSSECEEE-SSCESEEES-EEES-STTSEEEE-CCES-EE
T ss_pred EEEEECCcCeEEeeeEEEe---------------------CCCeEEEEEcCCCeEEECeEEEC-CCcEEEEe-cCCCeEE
Confidence 4778888999999999995 25688999999999999999999 44455664 4589999
Q ss_pred EcceecccCeeeEecCCCcccCCCcceEEEEeeEEcCCCcCCCceee--ccEEEEEcceecCccceEEeeCC--CceEEe
Q 023995 111 SNNFMTHHDKVMLLGHSDTYTQDKNMQVTIAFNHFGEGLVQRIPRCR--HGYFHVVNNDYTHWEMYAIGGSA--NPTINS 186 (274)
Q Consensus 111 S~~~f~~h~k~~l~G~sd~~~~d~~~~vT~hhN~f~~~~~~R~Pr~R--~G~~hv~NN~~~~~~~yaig~~~--~~~i~~ 186 (274)
++|.|.+...+..+-.+. .+++.+|.| .++..-.=.++ ...+.+.||.+.+-..+++.... .+.+.+
T Consensus 59 ~~~~~~~~~~~i~~~~~~--------~~~i~~~~i-~~~~~~gi~~~~~~~~~~i~~n~~~~~~~~gi~~~~~~~~~~~i 129 (158)
T PF13229_consen 59 SNNTISDNGSGIYVSGSS--------NITIENNRI-ENNGDYGIYISNSSSNVTIENNTIHNNGGSGIYLEGGSSPNVTI 129 (158)
T ss_dssp ES-EEES-SEEEECCS-C--------S-EEES-EE-ECSSS-SCE-TCEECS-EEES-EEECCTTSSCEEEECC--S-EE
T ss_pred ECeEEEEccceEEEEecC--------CceecCcEE-EcCCCccEEEeccCCCEEEEeEEEEeCcceeEEEECCCCCeEEE
Confidence 999999887444443222 799999999 45544333333 23678899998876555554444 348888
Q ss_pred eccEEeCCC
Q 023995 187 QGNRFAAPD 195 (274)
Q Consensus 187 e~N~F~~~~ 195 (274)
++|.|....
T Consensus 130 ~~n~i~~~~ 138 (158)
T PF13229_consen 130 ENNTISNNG 138 (158)
T ss_dssp ECEEEECES
T ss_pred EEEEEEeCc
Confidence 999998754
No 6
>PF14592 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OFL_A 1DBO_A 1DBG_A.
Probab=98.03 E-value=0.0001 Score=71.98 Aligned_cols=174 Identities=17% Similarity=0.195 Sum_probs=74.2
Q ss_pred ceEEee-cCceEEecCCcEEEeeeceEEEEceEEEecccCCCccccCC--CCC-CC--Cc-c----------ccCCCeEE
Q 023995 15 KTIDGR-GASVHIAGGPCITIQYVTNIIIHGLNIHDCKKGGNAMVRDS--PRH-FG--WR-T----------VSDGDGVS 77 (274)
Q Consensus 15 kTI~G~-G~~~~i~~G~~l~i~~~~NVIIrnl~i~~~~~~~~~~~~~~--~~~-~~--~~-~----------~~~~DaI~ 77 (274)
+||-.+ +..+.|.|...|.| ..+.++|.+|.|+++.+.....+.-. ... +. -| + ..+.+...
T Consensus 44 Itl~Ae~~G~vvi~G~s~l~i-~G~yl~v~GL~F~ng~~~~~~vi~fr~~~~~~~a~~~RlT~~vi~~fn~~~~~~~~~w 122 (425)
T PF14592_consen 44 ITLRAENPGKVVITGESNLRI-SGSYLVVSGLKFKNGYTPTGAVISFRNGGDASYANHCRLTNCVIDDFNNPDREESDNW 122 (425)
T ss_dssp EEEEESSTTSEEEEES-EEEE--SSSEEEES-EEEEE---TTT--TTS--SEEE-SSS-EEES-EEES--SS-S-SEEE-
T ss_pred EEEEecCCCeEEEecceeEEE-EeeeEEEeCeEEecCCCCCCceEEeecCCCcceecceEEEeEEeeccCCcccccCceE
Confidence 566665 34577775566777 47999999999998653322211100 000 00 00 0 01111222
Q ss_pred e----eCCeeEEEeceeccCC--CCCeEEee-------eCCceEEEEcceec-------ccCeeeEecCCCcccCCCcce
Q 023995 78 I----FGGTHIWVDHCSLSNC--DDGLVDAI-------HGSTAITISNNFMT-------HHDKVMLLGHSDTYTQDKNMQ 137 (274)
Q Consensus 78 i----~~~~nVWIDHcs~s~~--~Dglidv~-------~~s~~vTvS~~~f~-------~h~k~~l~G~sd~~~~d~~~~ 137 (274)
| -.++|-=||||+|..- ..-+|-+. .-..+-+|.+|+|. +...++-||.|.....+ -+
T Consensus 123 v~~~~l~G~~NrvDhn~F~gK~~~G~~l~V~~~~~~~~~~~~~h~IdhNyF~~rp~~g~NggEtIRiG~S~~S~~~--s~ 200 (425)
T PF14592_consen 123 VTIYSLYGKHNRVDHNYFQGKTNRGPTLAVRVILNGSQSIANYHRIDHNYFGPRPPKGGNGGETIRIGTSHSSMSD--SN 200 (425)
T ss_dssp --TT-----S-EEES-EEE---SSS-SEEE--S--SS-------EEES-EEE-E---SSS---SEEE-SSTT-B------
T ss_pred EEEEEeeccCceEEccEeeccccCCcEEEEEecccCccccccCceEEeccccccCCCCCCCceeEEEecccccccc--cc
Confidence 2 1344555799999983 22233332 22457899999998 35566778877643333 38
Q ss_pred EEEEeeEEcCCCcCCCcee--eccEEEEEcceecCccceEEeeCCCceEEeeccEEeC
Q 023995 138 VTIAFNHFGEGLVQRIPRC--RHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRFAA 193 (274)
Q Consensus 138 vT~hhN~f~~~~~~R~Pr~--R~G~~hv~NN~~~~~~~yaig~~~~~~i~~e~N~F~~ 193 (274)
.++.+||| ++|..-.=-+ +-+.-=++||.|++..+ ++-.+-|-.-.+++|+|..
T Consensus 201 t~Ve~NlF-e~cdGE~EIISvKS~~N~ir~Ntf~es~G-~ltlRHGn~n~V~gN~FiG 256 (425)
T PF14592_consen 201 TTVENNLF-ERCDGEVEIISVKSSDNTIRNNTFRESQG-SLTLRHGNRNTVEGNVFIG 256 (425)
T ss_dssp -EEES-EE-EEE-SSSEEEEEESBT-EEES-EEES-SS-EEEEEE-SS-EEES-EEEE
T ss_pred eeeecchh-hhcCCceeEEEeecCCceEeccEEEeccc-eEEEecCCCceEeccEEec
Confidence 99999999 7888775433 34566677777765321 1222223333445555554
No 7
>PLN02218 polygalacturonase ADPG
Probab=97.97 E-value=0.00013 Score=71.71 Aligned_cols=97 Identities=16% Similarity=0.174 Sum_probs=69.7
Q ss_pred CCCeEEeeCCeeEEEeceeccCCCCCeEEeeeCCceEEEEcceecccCeeeEecCCCccc-CCCcceEEEEeeEEcCCCc
Q 023995 72 DGDGVSIFGGTHIWVDHCSLSNCDDGLVDAIHGSTAITISNNFMTHHDKVMLLGHSDTYT-QDKNMQVTIAFNHFGEGLV 150 (274)
Q Consensus 72 ~~DaI~i~~~~nVWIDHcs~s~~~Dglidv~~~s~~vTvS~~~f~~h~k~~l~G~sd~~~-~d~~~~vT~hhN~f~~~~~ 150 (274)
..|+|.+.+++||.|.+|.++.+ |..|.++.++++|+|++|.+.. ..+.-||+--.+. .+.--.|++.++.| .+ .
T Consensus 241 NTDGIdi~ss~nV~I~n~~I~tG-DDcIaIksgs~nI~I~n~~c~~-GHGisIGS~g~~~~~~~V~nV~v~n~~~-~~-t 316 (431)
T PLN02218 241 NTDGIHITNTQNIRVSNSIIGTG-DDCISIESGSQNVQINDITCGP-GHGISIGSLGDDNSKAFVSGVTVDGAKL-SG-T 316 (431)
T ss_pred CCCcEeecccceEEEEccEEecC-CceEEecCCCceEEEEeEEEEC-CCCEEECcCCCCCCCceEEEEEEEccEE-ec-C
Confidence 67999999999999999999877 7789999999999999999953 3345677653322 23345799999999 44 4
Q ss_pred CCCceeec---cEEEEEcceecCcc
Q 023995 151 QRIPRCRH---GYFHVVNNDYTHWE 172 (274)
Q Consensus 151 ~R~Pr~R~---G~~hv~NN~~~~~~ 172 (274)
.+.=|++- |.-.+-|=.|++..
T Consensus 317 ~nGvRIKT~~Gg~G~v~nI~f~ni~ 341 (431)
T PLN02218 317 DNGVRIKTYQGGSGTASNIIFQNIQ 341 (431)
T ss_pred CcceEEeecCCCCeEEEEEEEEeEE
Confidence 55667751 22344444445443
No 8
>PLN03003 Probable polygalacturonase At3g15720
Probab=97.92 E-value=0.00022 Score=70.54 Aligned_cols=83 Identities=16% Similarity=0.237 Sum_probs=63.5
Q ss_pred cCCCeEEeeCCeeEEEeceeccCCCCCeEEeeeCCceEEEEcceecccCeeeEecCCCccc-CCCcceEEEEeeEEcCCC
Q 023995 71 SDGDGVSIFGGTHIWVDHCSLSNCDDGLVDAIHGSTAITISNNFMTHHDKVMLLGHSDTYT-QDKNMQVTIAFNHFGEGL 149 (274)
Q Consensus 71 ~~~DaI~i~~~~nVWIDHcs~s~~~Dglidv~~~s~~vTvS~~~f~~h~k~~l~G~sd~~~-~d~~~~vT~hhN~f~~~~ 149 (274)
...|+|.+..++||+|.+|.++.+ |..|.++.++++|+|++|.+... .+.-||+--++. .+.--.|++.++.| .++
T Consensus 186 pNTDGIDi~~S~nV~I~n~~I~tG-DDCIaiksgs~NI~I~n~~c~~G-HGISIGSlg~~g~~~~V~NV~v~n~~~-~~T 262 (456)
T PLN03003 186 PNTDGIDVGASSNVVIQDCIIATG-DDCIAINSGTSNIHISGIDCGPG-HGISIGSLGKDGETATVENVCVQNCNF-RGT 262 (456)
T ss_pred CCCCcEeecCcceEEEEecEEecC-CCeEEeCCCCccEEEEeeEEECC-CCeEEeeccCCCCcceEEEEEEEeeEE-ECC
Confidence 367999999999999999988765 77889999999999999998642 345677654332 23355799999999 453
Q ss_pred cCCCceee
Q 023995 150 VQRIPRCR 157 (274)
Q Consensus 150 ~~R~Pr~R 157 (274)
.+.=|++
T Consensus 263 -~nGvRIK 269 (456)
T PLN03003 263 -MNGARIK 269 (456)
T ss_pred -CcEEEEE
Confidence 5555775
No 9
>PLN02188 polygalacturonase/glycoside hydrolase family protein
Probab=97.85 E-value=0.00031 Score=68.48 Aligned_cols=82 Identities=16% Similarity=0.276 Sum_probs=62.1
Q ss_pred CCCeEEeeCCeeEEEeceeccCCCCCeEEeeeCCceEEEEcceecccCeeeEecCCCcc-cCCCcceEEEEeeEEcCCCc
Q 023995 72 DGDGVSIFGGTHIWVDHCSLSNCDDGLVDAIHGSTAITISNNFMTHHDKVMLLGHSDTY-TQDKNMQVTIAFNHFGEGLV 150 (274)
Q Consensus 72 ~~DaI~i~~~~nVWIDHcs~s~~~Dglidv~~~s~~vTvS~~~f~~h~k~~l~G~sd~~-~~d~~~~vT~hhN~f~~~~~ 150 (274)
..|+|-+..+++|+|.+|.++.+-| .|.++.++++|+|+++.+.. ..++-+|+--.+ ....--.|++.++.| .+ .
T Consensus 204 NtDGidi~~s~nV~I~n~~I~~GDD-cIaiksg~~nI~I~n~~c~~-ghGisiGSlG~~~~~~~V~nV~v~n~~~-~~-t 279 (404)
T PLN02188 204 NTDGIHIERSSGVYISDSRIGTGDD-CISIGQGNSQVTITRIRCGP-GHGISVGSLGRYPNEGDVTGLVVRDCTF-TG-T 279 (404)
T ss_pred CCCcEeeeCcccEEEEeeEEeCCCc-EEEEccCCccEEEEEEEEcC-CCcEEeCCCCCCCcCCcEEEEEEEeeEE-EC-C
Confidence 6799999999999999999988766 88999999999999999863 335667773221 123345799999999 44 3
Q ss_pred CCCceee
Q 023995 151 QRIPRCR 157 (274)
Q Consensus 151 ~R~Pr~R 157 (274)
.|.=|++
T Consensus 280 ~~GiriK 286 (404)
T PLN02188 280 TNGIRIK 286 (404)
T ss_pred CcEEEEE
Confidence 4555664
No 10
>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein. Members of this protein family contain a tandem pair of beta-helix repeats (see TIGR03804). Each repeat is expected to consist of three beta strands that form a single turn as they form a right-handed helix of stacked beta-structure. Member proteinsa occur regularly in two-gene pairs along with another uncharacterized protein family; both protein families exhibit either lipoprotein or regular signal peptides, suggesting transit through the plasma membrane, and the two may be fused. The function of the pair is unknown.
Probab=97.79 E-value=0.0012 Score=62.15 Aligned_cols=164 Identities=13% Similarity=0.056 Sum_probs=97.1
Q ss_pred EEc-CCCceEEeecCceEEecCCcEEEeeeceEEEEceEEEeccc------CCCccccCCCCCC--CCccc-cCCCeEEe
Q 023995 9 LIM-NSFKTIDGRGASVHIAGGPCITIQYVTNIIIHGLNIHDCKK------GGNAMVRDSPRHF--GWRTV-SDGDGVSI 78 (274)
Q Consensus 9 L~v-~snkTI~G~G~~~~i~~G~~l~i~~~~NVIIrnl~i~~~~~------~~~~~~~~~~~~~--~~~~~-~~~DaI~i 78 (274)
|.+ .++.||.|..- .=.++.+|.+.+++|++||++++..... ..+-.+..+.... +..-. ...++|.+
T Consensus 58 i~v~a~~VtI~~ltI--~~~~~~GI~v~~s~~i~I~n~~i~~~~~~~~~~~~~GI~~~~s~~v~I~~n~i~g~~d~GIyv 135 (314)
T TIGR03805 58 LLVTSDDVTLSDLAV--ENTKGDGVKVKGSDGIIIRRLRVEWTGGPKSSNGAYGIYPVESTNVLVEDSYVRGASDAGIYV 135 (314)
T ss_pred EEEEeCCeEEEeeEE--EcCCCCeEEEeCCCCEEEEeeEEEeccCccccCCcceEEEeccCCEEEECCEEECCCcccEEE
Confidence 444 36677766521 0012457888889999999999863210 0000111111100 01111 23348999
Q ss_pred eCCeeEEEeceeccCCCCCeEEeeeCCceEEEEcceecccCeeeEecCCCcccCCCcceEEEEeeEEcCCCcCCC-----
Q 023995 79 FGGTHIWVDHCSLSNCDDGLVDAIHGSTAITISNNFMTHHDKVMLLGHSDTYTQDKNMQVTIAFNHFGEGLVQRI----- 153 (274)
Q Consensus 79 ~~~~nVWIDHcs~s~~~Dglidv~~~s~~vTvS~~~f~~h~k~~l~G~sd~~~~d~~~~vT~hhN~f~~~~~~R~----- 153 (274)
..++++.|-+|.+.....|..-. .|.+++|.+|.|.+-.-+.++-..+....-...++++++|.|. +....+
T Consensus 136 ~~s~~~~v~nN~~~~n~~GI~i~--~S~~~~v~~N~~~~N~~Gi~v~~~p~~~~~~s~~~~v~~N~i~-~n~~~n~~~~g 212 (314)
T TIGR03805 136 GQSQNIVVRNNVAEENVAGIEIE--NSQNADVYNNIATNNTGGILVFDLPGLPQPGGSNVRVFDNIIF-DNNTPNFAPAG 212 (314)
T ss_pred CCCCCeEEECCEEccCcceEEEE--ecCCcEEECCEEeccceeEEEeecCCCCcCCccceEEECCEEE-CCCCCCCcccC
Confidence 99999999999999887775443 4789999999999766666663322211111238999999994 554332
Q ss_pred ------ceee------ccEEEEEcceecCccceEEe
Q 023995 154 ------PRCR------HGYFHVVNNDYTHWEMYAIG 177 (274)
Q Consensus 154 ------Pr~R------~G~~hv~NN~~~~~~~yaig 177 (274)
|.-+ .-.+.++||.+++-...++.
T Consensus 213 n~v~~~~~g~Gi~i~~~~~v~I~~N~i~~n~~~~i~ 248 (314)
T TIGR03805 213 SIVASVPAGTGVVVMANRDVEIFGNVISNNDTANVL 248 (314)
T ss_pred CceecCCCCcEEEEEcccceEEECCEEeCCcceeEE
Confidence 1111 02569999999875544443
No 11
>PLN02155 polygalacturonase
Probab=97.79 E-value=0.00026 Score=68.79 Aligned_cols=98 Identities=18% Similarity=0.132 Sum_probs=69.9
Q ss_pred cCCCeEEeeCCeeEEEeceeccCCCCCeEEeeeCCceEEEEcceecccCeeeEecCCCcc-cCCCcceEEEEeeEEcCCC
Q 023995 71 SDGDGVSIFGGTHIWVDHCSLSNCDDGLVDAIHGSTAITISNNFMTHHDKVMLLGHSDTY-TQDKNMQVTIAFNHFGEGL 149 (274)
Q Consensus 71 ~~~DaI~i~~~~nVWIDHcs~s~~~Dglidv~~~s~~vTvS~~~f~~h~k~~l~G~sd~~-~~d~~~~vT~hhN~f~~~~ 149 (274)
...|+|.+..++||+|.+|.++.+-| .|.++.++++|+|++|.+.. ..++-||+.-.+ +..+-..|++.++.| .+.
T Consensus 193 ~NtDGidi~~s~nV~I~~~~I~~gDD-cIaik~gs~nI~I~n~~c~~-GhGisIGS~g~~~~~~~V~nV~v~n~~~-~~t 269 (394)
T PLN02155 193 PNTDGFHVQFSTGVTFTGSTVQTGDD-CVAIGPGTRNFLITKLACGP-GHGVSIGSLAKELNEDGVENVTVSSSVF-TGS 269 (394)
T ss_pred CCCCccccccceeEEEEeeEEecCCc-eEEcCCCCceEEEEEEEEEC-CceEEeccccccCCCCcEEEEEEEeeEE-eCC
Confidence 35799999999999999999988766 78999899999999998874 235668875322 133445899999999 443
Q ss_pred cCCCceeec----cEEEEEcceecCcc
Q 023995 150 VQRIPRCRH----GYFHVVNNDYTHWE 172 (274)
Q Consensus 150 ~~R~Pr~R~----G~~hv~NN~~~~~~ 172 (274)
.|.=|++. +.-.+-|=.|++..
T Consensus 270 -~~GirIKT~~~~~gG~v~nI~f~ni~ 295 (394)
T PLN02155 270 -QNGVRIKSWARPSTGFVRNVFFQDLV 295 (394)
T ss_pred -CcEEEEEEecCCCCEEEEEEEEEeEE
Confidence 45556642 12345555555543
No 12
>PLN02793 Probable polygalacturonase
Probab=97.72 E-value=0.00044 Score=68.24 Aligned_cols=121 Identities=15% Similarity=0.190 Sum_probs=78.2
Q ss_pred EEEeeeceEEEEceEEEecccCCCccccCCCC------CC-CCccccCCCeEEeeCCeeEEEeceeccCCCCCeEEeeeC
Q 023995 32 ITIQYVTNIIIHGLNIHDCKKGGNAMVRDSPR------HF-GWRTVSDGDGVSIFGGTHIWVDHCSLSNCDDGLVDAIHG 104 (274)
Q Consensus 32 l~i~~~~NVIIrnl~i~~~~~~~~~~~~~~~~------~~-~~~~~~~~DaI~i~~~~nVWIDHcs~s~~~Dglidv~~~ 104 (274)
|.+.+++||.|++|++++.. .+--.+..+.. .. ........|+|.+..++||+|.+|.++. .|..+.++.+
T Consensus 180 i~f~~~~nv~v~gitl~nSp-~~~i~~~~~~nv~i~~l~I~~p~~spNTDGIdi~~s~nV~I~n~~I~~-gDDcIaik~~ 257 (443)
T PLN02793 180 ITFHKCKDLRVENLNVIDSQ-QMHIAFTNCRRVTISGLKVIAPATSPNTDGIHISASRGVVIKDSIVRT-GDDCISIVGN 257 (443)
T ss_pred EEEEeeccEEEECeEEEcCC-CeEEEEEccCcEEEEEEEEECCCCCCCCCcEeeeccceEEEEeCEEeC-CCCeEEecCC
Confidence 56677888888888877531 11111111000 00 0001136799999999999999999885 5778899888
Q ss_pred CceEEEEcceecccCeeeEecCCCcc-cCCCcceEEEEeeEEcCCCcCCCceee
Q 023995 105 STAITISNNFMTHHDKVMLLGHSDTY-TQDKNMQVTIAFNHFGEGLVQRIPRCR 157 (274)
Q Consensus 105 s~~vTvS~~~f~~h~k~~l~G~sd~~-~~d~~~~vT~hhN~f~~~~~~R~Pr~R 157 (274)
+++|+|++|.+..- .+.-||+--.+ ....-..|++.++.| .+ ..+.=|++
T Consensus 258 s~nI~I~n~~c~~G-hGisIGSlg~~~~~~~V~nV~v~n~~~-~~-t~~GirIK 308 (443)
T PLN02793 258 SSRIKIRNIACGPG-HGISIGSLGKSNSWSEVRDITVDGAFL-SN-TDNGVRIK 308 (443)
T ss_pred cCCEEEEEeEEeCC-ccEEEecccCcCCCCcEEEEEEEccEE-eC-CCceEEEE
Confidence 99999999998642 24567764222 122345799999999 44 44666664
No 13
>PF13229 Beta_helix: Right handed beta helix region; PDB: 2INV_C 2INU_C 1RU4_A.
Probab=97.71 E-value=0.00056 Score=55.49 Aligned_cols=131 Identities=21% Similarity=0.235 Sum_probs=81.8
Q ss_pred CCcEEEeeeceEEEEceEEEecccCCCccccCCCCCCCCccccCCCeEEeeCCeeEEEeceeccCCCCCeEEeeeCCceE
Q 023995 29 GPCITIQYVTNIIIHGLNIHDCKKGGNAMVRDSPRHFGWRTVSDGDGVSIFGGTHIWVDHCSLSNCDDGLVDAIHGSTAI 108 (274)
Q Consensus 29 G~~l~i~~~~NVIIrnl~i~~~~~~~~~~~~~~~~~~~~~~~~~~DaI~i~~~~nVWIDHcs~s~~~Dglidv~~~s~~v 108 (274)
+.+|.+...+++.|++-+|++ .+.+|.+.+..++.|+.|.|+... ..+.+. .+..+
T Consensus 23 ~~gi~~~~~~~~~i~n~~i~~----------------------~~~gi~~~~~~~~~i~~~~~~~~~-~~i~~~-~~~~~ 78 (158)
T PF13229_consen 23 GDGIHVSGSSNITIENCTISN----------------------GGYGIYVSGGSNVTISNNTISDNG-SGIYVS-GSSNI 78 (158)
T ss_dssp SECEEE-SSCESEEES-EEES----------------------STTSEEEECCES-EEES-EEES-S-EEEECC-S-CS-
T ss_pred CeEEEEEcCCCeEEECeEEEC----------------------CCcEEEEecCCCeEEECeEEEEcc-ceEEEE-ecCCc
Confidence 446777777888889999984 356788888899999999999988 555565 78899
Q ss_pred EEEcceecccCe-eeEecCCCcccCCCcceEEEEeeEEcCCCcCCCceeec-c--EEEEEcceecCccceEEeeCCCce-
Q 023995 109 TISNNFMTHHDK-VMLLGHSDTYTQDKNMQVTIAFNHFGEGLVQRIPRCRH-G--YFHVVNNDYTHWEMYAIGGSANPT- 183 (274)
Q Consensus 109 TvS~~~f~~h~k-~~l~G~sd~~~~d~~~~vT~hhN~f~~~~~~R~Pr~R~-G--~~hv~NN~~~~~~~yaig~~~~~~- 183 (274)
+|++|.|.+... ++.+.. ....+++.+|.| .++....=.+.. . .+-+.+|.+++-..+++.......
T Consensus 79 ~i~~~~i~~~~~~gi~~~~-------~~~~~~i~~n~~-~~~~~~gi~~~~~~~~~~~i~~n~i~~~~~~gi~~~~~~~~ 150 (158)
T PF13229_consen 79 TIENNRIENNGDYGIYISN-------SSSNVTIENNTI-HNNGGSGIYLEGGSSPNVTIENNTISNNGGNGIYLISGSSN 150 (158)
T ss_dssp EEES-EEECSSS-SCE-TC-------EECS-EEES-EE-ECCTTSSCEEEECC--S-EEECEEEECESSEEEE-TT-SS-
T ss_pred eecCcEEEcCCCccEEEec-------cCCCEEEEeEEE-EeCcceeEEEECCCCCeEEEEEEEEEeCcceeEEEECCCCe
Confidence 999999997765 444443 012699999999 454433333332 2 566789998887778887666555
Q ss_pred EEeeccEE
Q 023995 184 INSQGNRF 191 (274)
Q Consensus 184 i~~e~N~F 191 (274)
+.+.+|.|
T Consensus 151 ~~v~~n~~ 158 (158)
T PF13229_consen 151 CTVTNNTF 158 (158)
T ss_dssp -EEES-E-
T ss_pred EEEECCCC
Confidence 78888876
No 14
>PLN03010 polygalacturonase
Probab=97.68 E-value=0.0016 Score=63.77 Aligned_cols=97 Identities=19% Similarity=0.199 Sum_probs=65.3
Q ss_pred cCCCeEEeeCCeeEEEeceeccCCCCCeEEeeeCCceEEEEcceec-ccCeeeEecCCCcc-cCCCcceEEEEeeEEcCC
Q 023995 71 SDGDGVSIFGGTHIWVDHCSLSNCDDGLVDAIHGSTAITISNNFMT-HHDKVMLLGHSDTY-TQDKNMQVTIAFNHFGEG 148 (274)
Q Consensus 71 ~~~DaI~i~~~~nVWIDHcs~s~~~Dglidv~~~s~~vTvS~~~f~-~h~k~~l~G~sd~~-~~d~~~~vT~hhN~f~~~ 148 (274)
...|+|-+..+++|+|..|.+..+ |-.|.++.++++++|.++... .| +.-||+--.. ..+.--.|++.++.| .+
T Consensus 205 ~NTDGiDi~~s~nV~I~n~~I~~g-DDcIaiksgs~ni~I~~~~C~~gH--GisIGS~g~~~~~~~V~nV~v~n~~i-~~ 280 (409)
T PLN03010 205 PNTDGIDISYSTNINIFDSTIQTG-DDCIAINSGSSNINITQINCGPGH--GISVGSLGADGANAKVSDVHVTHCTF-NQ 280 (409)
T ss_pred CCCCceeeeccceEEEEeeEEecC-CCeEEecCCCCcEEEEEEEeECcC--CEEEccCCCCCCCCeeEEEEEEeeEE-eC
Confidence 367999999999999999988776 888999988887777766554 23 3456654322 122345799999999 44
Q ss_pred CcCCCceeec---cEEEEEcceecCcc
Q 023995 149 LVQRIPRCRH---GYFHVVNNDYTHWE 172 (274)
Q Consensus 149 ~~~R~Pr~R~---G~~hv~NN~~~~~~ 172 (274)
.++.=|++. |.-.+.|=.|++..
T Consensus 281 -t~~GirIKt~~G~~G~v~nItf~nI~ 306 (409)
T PLN03010 281 -TTNGARIKTWQGGQGYARNISFENIT 306 (409)
T ss_pred -CCcceEEEEecCCCEEEEEeEEEeEE
Confidence 345556651 23345555555543
No 15
>PF00295 Glyco_hydro_28: Glycosyl hydrolases family 28; InterPro: IPR000743 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 28 GH28 from CAZY comprises enzymes with several known activities; polygalacturonase (3.2.1.15 from EC); exo-polygalacturonase (3.2.1.67 from EC); exo-polygalacturonase (3.2.1.82 from EC); rhamnogalacturonase (EC not defined). Polygalacturonase (PG) (pectinase) [, ] catalyses the random hydrolysis of 1,4-alpha-D-galactosiduronic linkages in pectate and other galacturonans. In fruit, polygalacturonase plays an important role in cell wall metabolism during ripening. In plant bacterial pathogens such as Erwinia carotovora or Ralstonia solanacearum (Pseudomonas solanacearum) and fungal pathogens such as Aspergillus niger, polygalacturonase is involved in maceration and soft-rotting of plant tissue. Exo-poly-alpha-D-galacturonosidase (3.2.1.82 from EC) (exoPG) [] hydrolyses peptic acid from the non-reducing end, releasing digalacturonate. PG and exoPG share a few regions of sequence similarity, and belong to family 28 of the glycosyl hydrolases.; GO: 0004650 polygalacturonase activity, 0005975 carbohydrate metabolic process; PDB: 1KCC_A 1KCD_A 1K5C_A 1HG8_A 2IQ7_A 2UVF_B 1RMG_A 1CZF_B 3JUR_C 1BHE_A ....
Probab=97.58 E-value=0.00056 Score=64.64 Aligned_cols=83 Identities=17% Similarity=0.232 Sum_probs=59.5
Q ss_pred cCCCeEEeeCCeeEEEeceeccCCCCCeEEeeeCCceEEEEcceecccCeeeEecCCCcccC-CCcceEEEEeeEEcCCC
Q 023995 71 SDGDGVSIFGGTHIWVDHCSLSNCDDGLVDAIHGSTAITISNNFMTHHDKVMLLGHSDTYTQ-DKNMQVTIAFNHFGEGL 149 (274)
Q Consensus 71 ~~~DaI~i~~~~nVWIDHcs~s~~~Dglidv~~~s~~vTvS~~~f~~h~k~~l~G~sd~~~~-d~~~~vT~hhN~f~~~~ 149 (274)
...|+|.+.+++||.|++|.+..+ |-.+.++.++.+|+|++|.|.. ..++-+|+.-.... ..--.|+|.++.| .+
T Consensus 140 ~NtDGid~~~s~nv~I~n~~i~~g-DD~Iaiks~~~ni~v~n~~~~~-ghGisiGS~~~~~~~~~i~nV~~~n~~i-~~- 215 (326)
T PF00295_consen 140 PNTDGIDIDSSKNVTIENCFIDNG-DDCIAIKSGSGNILVENCTCSG-GHGISIGSEGSGGSQNDIRNVTFENCTI-IN- 215 (326)
T ss_dssp TS--SEEEESEEEEEEESEEEESS-SESEEESSEECEEEEESEEEES-SSEEEEEEESSSSE--EEEEEEEEEEEE-ES-
T ss_pred CCcceEEEEeeeEEEEEEeecccc-cCcccccccccceEEEeEEEec-cccceeeeccCCccccEEEeEEEEEEEe-ec-
Confidence 367999999999999999999766 7788998777899999999974 33356665332211 1234799999999 44
Q ss_pred cCCCceee
Q 023995 150 VQRIPRCR 157 (274)
Q Consensus 150 ~~R~Pr~R 157 (274)
..|.-|++
T Consensus 216 t~~gi~iK 223 (326)
T PF00295_consen 216 TDNGIRIK 223 (326)
T ss_dssp ESEEEEEE
T ss_pred cceEEEEE
Confidence 45666664
No 16
>PF01696 Adeno_E1B_55K: Adenovirus EB1 55K protein / large t-antigen; InterPro: IPR002612 This family consists of adenovirus E1B 55 kDa protein or large t-antigen. E1B 55 kDa binds p53 the tumor suppressor protein converting it from a transcriptional activator which responds to damaged DNA in to an unregulated repressor of genes with a p53 binding site []. This protects the virus against p53 induced host antiviral responses and prevents apoptosis as induced by the adenovirus E1A protein []. The E1B region of adenovirus encodes two proteins E1B 55 kDa, the large t-antigen as found in this family and E1B 19 kDa IPR002924 from INTERPRO, the small t-antigen. Both of these proteins inhibit E1A induced apoptosis.
Probab=97.25 E-value=0.012 Score=56.95 Aligned_cols=156 Identities=14% Similarity=0.177 Sum_probs=114.3
Q ss_pred EecceEEcCCCceEEeecCceEEec--CCcEEE---------eeeceEEEEceEEEecccCCCccccCCCCCCCCccccC
Q 023995 4 RLKEELIMNSFKTIDGRGASVHIAG--GPCITI---------QYVTNIIIHGLNIHDCKKGGNAMVRDSPRHFGWRTVSD 72 (274)
Q Consensus 4 ~L~~~L~v~snkTI~G~G~~~~i~~--G~~l~i---------~~~~NVIIrnl~i~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (274)
+++++|.|++--+|+|+||-+.|.+ +..|.+ .+-.+|.+.|++|.... .
T Consensus 76 ~i~~~V~I~~~cYIiGnGA~V~v~~~~~~~f~v~~~~~~P~V~gM~~VtF~ni~F~~~~--------------------~ 135 (386)
T PF01696_consen 76 VIRKPVNIRSCCYIIGNGATVRVNGPDRVAFRVCMQSMGPGVVGMEGVTFVNIRFEGRD--------------------T 135 (386)
T ss_pred EEeeeEEecceEEEECCCEEEEEeCCCCceEEEEcCCCCCeEeeeeeeEEEEEEEecCC--------------------c
Confidence 4678999999999999999988862 333443 35679999999998421 2
Q ss_pred CCeEEeeCCeeEEEeceeccCCCCCeEEeeeCCceEEEEcceecccCeeeEecCCCcccCCCcceEEEEeeEEcCCCcCC
Q 023995 73 GDGVSIFGGTHIWVDHCSLSNCDDGLVDAIHGSTAITISNNFMTHHDKVMLLGHSDTYTQDKNMQVTIAFNHFGEGLVQR 152 (274)
Q Consensus 73 ~DaI~i~~~~nVWIDHcs~s~~~Dglidv~~~s~~vTvS~~~f~~h~k~~l~G~sd~~~~d~~~~vT~hhN~f~~~~~~R 152 (274)
--++-+...+++.|.-|+|....-=.|+.. ....|.-|.|..-+|++ .+.+ +.++++.+|.| +.|.==
T Consensus 136 ~~g~~f~~~t~~~~hgC~F~gf~g~cl~~~---~~~~VrGC~F~~C~~gi-~~~~-------~~~lsVk~C~F-ekC~ig 203 (386)
T PF01696_consen 136 FSGVVFHANTNTLFHGCSFFGFHGTCLESW---AGGEVRGCTFYGCWKGI-VSRG-------KSKLSVKKCVF-EKCVIG 203 (386)
T ss_pred cceeEEEecceEEEEeeEEecCcceeEEEc---CCcEEeeeEEEEEEEEe-ecCC-------cceEEeeheee-eheEEE
Confidence 356777788999999999999888888876 36789999999888885 3333 34899999999 644321
Q ss_pred CceeeccEEEEEcceecCccceEEeeCCCceEEeeccEEeCCCC
Q 023995 153 IPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRFAAPDR 196 (274)
Q Consensus 153 ~Pr~R~G~~hv~NN~~~~~~~yaig~~~~~~i~~e~N~F~~~~~ 196 (274)
. +-.|...+.+|.+.+-.-..+ .+.+-.+.+|.|..+.+
T Consensus 204 i--~s~G~~~i~hn~~~ec~Cf~l---~~g~g~i~~N~v~~~~~ 242 (386)
T PF01696_consen 204 I--VSEGPARIRHNCASECGCFVL---MKGTGSIKHNMVCGPND 242 (386)
T ss_pred E--EecCCeEEecceecccceEEE---EcccEEEeccEEeCCCC
Confidence 1 234789999999987543222 23344678999987655
No 17
>PF05048 NosD: Periplasmic copper-binding protein (NosD); InterPro: IPR007742 Bacterial nitrous oxide (N(2)O) reductase is the terminal oxidoreductase of a respiratory process that generates dinitrogen from N(2)O. To attain its functional state, the enzyme is subjected to a maturation process which involves the protein-driven synthesis of a unique copper-sulphur cluster and metallation of the binuclear Cu(A) site in the periplasm. NosD is a periplasmic protein which is thought to insert copper into the exported reductase apoenzyme [].
Probab=97.18 E-value=0.01 Score=52.84 Aligned_cols=131 Identities=21% Similarity=0.180 Sum_probs=91.4
Q ss_pred CcEEEeeeceEEEEceEEEecccCCCccccCCCCCCCCccccCCCeEEeeCCeeEEEeceeccCCCCCeEEeeeCCceEE
Q 023995 30 PCITIQYVTNIIIHGLNIHDCKKGGNAMVRDSPRHFGWRTVSDGDGVSIFGGTHIWVDHCSLSNCDDGLVDAIHGSTAIT 109 (274)
Q Consensus 30 ~~l~i~~~~NVIIrnl~i~~~~~~~~~~~~~~~~~~~~~~~~~~DaI~i~~~~nVWIDHcs~s~~~Dglidv~~~s~~vT 109 (274)
.++.+..+.++.|++.+|+. ...+|.+..++++-|.-|+++....|. .+. .+.+.|
T Consensus 36 ~gi~~~~s~~~~I~~n~i~~----------------------~~~GI~~~~s~~~~i~~n~i~~n~~Gi-~l~-~s~~~~ 91 (236)
T PF05048_consen 36 DGIYVENSDNNTISNNTISN----------------------NRYGIHLMGSSNNTIENNTISNNGYGI-YLM-GSSNNT 91 (236)
T ss_pred CEEEEEEcCCeEEEeeEEEC----------------------CCeEEEEEccCCCEEEeEEEEccCCCE-EEE-cCCCcE
Confidence 34556677777777777763 246788888888888888888888774 443 344459
Q ss_pred EEcceecccCeeeEecCCCcccCCCcceEEEEeeEEcCCCcCCCceeec-cEEEEEcceecCccceEEe-eCCCceEEee
Q 023995 110 ISNNFMTHHDKVMLLGHSDTYTQDKNMQVTIAFNHFGEGLVQRIPRCRH-GYFHVVNNDYTHWEMYAIG-GSANPTINSQ 187 (274)
Q Consensus 110 vS~~~f~~h~k~~l~G~sd~~~~d~~~~vT~hhN~f~~~~~~R~Pr~R~-G~~hv~NN~~~~~~~yaig-~~~~~~i~~e 187 (274)
|++|.|.+...+.++-.+. ..++..|.| . .....-.+.. ....+.+|.+.+-..|++. ........+.
T Consensus 92 I~~N~i~~n~~GI~l~~s~--------~~~I~~N~i-~-~~~~GI~l~~s~~n~I~~N~i~~n~~~Gi~~~~~s~~n~I~ 161 (236)
T PF05048_consen 92 ISNNTISNNGYGIYLYGSS--------NNTISNNTI-S-NNGYGIYLSSSSNNTITGNTISNNTDYGIYFLSGSSGNTIY 161 (236)
T ss_pred EECCEecCCCceEEEeeCC--------ceEEECcEE-e-CCCEEEEEEeCCCCEEECeEEeCCCccceEEeccCCCCEEE
Confidence 9999998776666665443 588999998 4 3444444443 4678889998877667777 5555667788
Q ss_pred ccEEeCC
Q 023995 188 GNRFAAP 194 (274)
Q Consensus 188 ~N~F~~~ 194 (274)
+|+|.+.
T Consensus 162 ~N~f~N~ 168 (236)
T PF05048_consen 162 NNNFNNS 168 (236)
T ss_pred CCCccCE
Confidence 9999333
No 18
>PLN02155 polygalacturonase
Probab=97.16 E-value=0.011 Score=57.62 Aligned_cols=109 Identities=18% Similarity=0.219 Sum_probs=77.8
Q ss_pred EEEeeeceEEEEceEEEecccCCCccccCCCCCCCCccccCCCeEEeeCCeeEEEeceeccCC-----CCCeEEeeeCCc
Q 023995 32 ITIQYVTNIIIHGLNIHDCKKGGNAMVRDSPRHFGWRTVSDGDGVSIFGGTHIWVDHCSLSNC-----DDGLVDAIHGST 106 (274)
Q Consensus 32 l~i~~~~NVIIrnl~i~~~~~~~~~~~~~~~~~~~~~~~~~~DaI~i~~~~nVWIDHcs~s~~-----~Dglidv~~~s~ 106 (274)
|.+.+++||.|++|++++. ..=.|.+.++++|.|++.++... .|| +|+. .++
T Consensus 148 i~~~~~~nv~i~gitl~nS---------------------p~w~i~~~~~~nv~i~~v~I~~p~~~~NtDG-idi~-~s~ 204 (394)
T PLN02155 148 ISFNSAKDVIISGVKSMNS---------------------QVSHMTLNGCTNVVVRNVKLVAPGNSPNTDG-FHVQ-FST 204 (394)
T ss_pred eeEEEeeeEEEECeEEEcC---------------------CCeEEEEECeeeEEEEEEEEECCCCCCCCCc-cccc-cce
Confidence 6788999999999999963 12357888999999999999653 465 5774 689
Q ss_pred eEEEEcceecccCeeeEecCCCcccCCCcceEEEEeeEEcCCCc------CCCc-eeeccEEEEEcceecC
Q 023995 107 AITISNNFMTHHDKVMLLGHSDTYTQDKNMQVTIAFNHFGEGLV------QRIP-RCRHGYFHVVNNDYTH 170 (274)
Q Consensus 107 ~vTvS~~~f~~h~k~~l~G~sd~~~~d~~~~vT~hhN~f~~~~~------~R~P-r~R~G~~hv~NN~~~~ 170 (274)
+|+|++|.|...+-...+++..+ .|++.++.+..++. .+.| .-..-.+.+.|+.+.+
T Consensus 205 nV~I~~~~I~~gDDcIaik~gs~-------nI~I~n~~c~~GhGisIGS~g~~~~~~~V~nV~v~n~~~~~ 268 (394)
T PLN02155 205 GVTFTGSTVQTGDDCVAIGPGTR-------NFLITKLACGPGHGVSIGSLAKELNEDGVENVTVSSSVFTG 268 (394)
T ss_pred eEEEEeeEEecCCceEEcCCCCc-------eEEEEEEEEECCceEEeccccccCCCCcEEEEEEEeeEEeC
Confidence 99999999998888877776532 68887777742111 1122 1112256777888775
No 19
>TIGR03808 RR_plus_rpt_1 twin-arg-translocated uncharacterized repeat protein. Members of this protein family have a Sec-independent twin-arginine tranlocation (TAT) signal sequence, which enables tranfer of proteins folded around prosthetic groups to cross the plasma membrane. These proteins have four copies of a repeat of about 23 amino acids that resembles the beta-helix repeat. Beta-helix refers to a structural motif in which successive beta strands wind around to stack parallel in a right-handed helix, as in AlgG and related enzymes of carbohydrate metabolism. The twin-arginine motif suggests that members of this protein family bind some unknown cofactor.
Probab=97.15 E-value=0.0094 Score=58.75 Aligned_cols=43 Identities=21% Similarity=0.295 Sum_probs=27.1
Q ss_pred ceEEcCCCceEEeecCce--EEecCCcEE-EeeeceEEEEceEEEe
Q 023995 7 EELIMNSFKTIDGRGASV--HIAGGPCIT-IQYVTNIIIHGLNIHD 49 (274)
Q Consensus 7 ~~L~v~snkTI~G~G~~~--~i~~G~~l~-i~~~~NVIIrnl~i~~ 49 (274)
.+|.+.++.||.|+.... .|.++..+. -..++||-|++|+|++
T Consensus 81 G~L~L~spltL~G~~gAt~~vIdG~~~lIiai~A~nVTIsGLtIdG 126 (455)
T TIGR03808 81 GPLRLPSGAQLIGVRGATRLVFTGGPSLLSSEGADGIGLSGLTLDG 126 (455)
T ss_pred ccEEECCCcEEEecCCcEEEEEcCCceEEEEecCCCeEEEeeEEEe
Confidence 567788888888874322 355333333 3467777777777765
No 20
>TIGR03808 RR_plus_rpt_1 twin-arg-translocated uncharacterized repeat protein. Members of this protein family have a Sec-independent twin-arginine tranlocation (TAT) signal sequence, which enables tranfer of proteins folded around prosthetic groups to cross the plasma membrane. These proteins have four copies of a repeat of about 23 amino acids that resembles the beta-helix repeat. Beta-helix refers to a structural motif in which successive beta strands wind around to stack parallel in a right-handed helix, as in AlgG and related enzymes of carbohydrate metabolism. The twin-arginine motif suggests that members of this protein family bind some unknown cofactor.
Probab=97.14 E-value=0.026 Score=55.66 Aligned_cols=67 Identities=10% Similarity=0.108 Sum_probs=43.5
Q ss_pred cEEEeeeceEEEEceEEEecccCCCccccCCCCCCCCccccCCCeEEeeCCeeEEEeceeccCCCCCeEEeeeCCceEEE
Q 023995 31 CITIQYVTNIIIHGLNIHDCKKGGNAMVRDSPRHFGWRTVSDGDGVSIFGGTHIWVDHCSLSNCDDGLVDAIHGSTAITI 110 (274)
Q Consensus 31 ~l~i~~~~NVIIrnl~i~~~~~~~~~~~~~~~~~~~~~~~~~~DaI~i~~~~nVWIDHcs~s~~~Dglidv~~~s~~vTv 110 (274)
+|.+++++++.|++.+|++. ..-+|.+++++...+| +.++...|--|-.+ .+...+|
T Consensus 137 gI~v~~a~~v~Iedn~L~gs---------------------g~FGI~L~~~~~~I~~-N~I~g~~~~~I~lw-~S~g~~V 193 (455)
T TIGR03808 137 LIHCQGGRDVRITDCEITGS---------------------GGNGIWLETVSGDISG-NTITQIAVTAIVSF-DALGLIV 193 (455)
T ss_pred EEEEccCCceEEEeeEEEcC---------------------CcceEEEEcCcceEec-ceEeccccceEEEe-ccCCCEE
Confidence 56678899999999999851 2345666666633333 33333333336665 5889999
Q ss_pred EcceecccCe
Q 023995 111 SNNFMTHHDK 120 (274)
Q Consensus 111 S~~~f~~h~k 120 (274)
..|.+.+...
T Consensus 194 ~~N~I~g~RD 203 (455)
T TIGR03808 194 ARNTIIGAND 203 (455)
T ss_pred ECCEEEccCC
Confidence 9999986543
No 21
>PF05048 NosD: Periplasmic copper-binding protein (NosD); InterPro: IPR007742 Bacterial nitrous oxide (N(2)O) reductase is the terminal oxidoreductase of a respiratory process that generates dinitrogen from N(2)O. To attain its functional state, the enzyme is subjected to a maturation process which involves the protein-driven synthesis of a unique copper-sulphur cluster and metallation of the binuclear Cu(A) site in the periplasm. NosD is a periplasmic protein which is thought to insert copper into the exported reductase apoenzyme [].
Probab=97.13 E-value=0.021 Score=50.74 Aligned_cols=108 Identities=22% Similarity=0.233 Sum_probs=77.2
Q ss_pred CcEEEeeeceEEEEceEEEecccCCCccccCCCCCCCCccccCCCeEEeeCCeeEEEeceeccCCCCCeEEeeeCCceEE
Q 023995 30 PCITIQYVTNIIIHGLNIHDCKKGGNAMVRDSPRHFGWRTVSDGDGVSIFGGTHIWVDHCSLSNCDDGLVDAIHGSTAIT 109 (274)
Q Consensus 30 ~~l~i~~~~NVIIrnl~i~~~~~~~~~~~~~~~~~~~~~~~~~~DaI~i~~~~nVWIDHcs~s~~~Dglidv~~~s~~vT 109 (274)
.+|.+..++++.|++-.|++ ..++|.+..+.+..|..++|+....|. -+. .+...|
T Consensus 58 ~GI~~~~s~~~~i~~n~i~~----------------------n~~Gi~l~~s~~~~I~~N~i~~n~~GI-~l~-~s~~~~ 113 (236)
T PF05048_consen 58 YGIHLMGSSNNTIENNTISN----------------------NGYGIYLMGSSNNTISNNTISNNGYGI-YLY-GSSNNT 113 (236)
T ss_pred eEEEEEccCCCEEEeEEEEc----------------------cCCCEEEEcCCCcEEECCEecCCCceE-EEe-eCCceE
Confidence 35777778888888888874 227788888887799999999988854 443 577788
Q ss_pred EEcceecccCeeeEecCCCcccCCCcceEEEEeeEEcCCCcCCCce-ee-ccEEEEEcceecC
Q 023995 110 ISNNFMTHHDKVMLLGHSDTYTQDKNMQVTIAFNHFGEGLVQRIPR-CR-HGYFHVVNNDYTH 170 (274)
Q Consensus 110 vS~~~f~~h~k~~l~G~sd~~~~d~~~~vT~hhN~f~~~~~~R~Pr-~R-~G~~hv~NN~~~~ 170 (274)
|+.|.|.+...++.+-.+. +.++.+|.| .++..---. +. -....+++|.|.+
T Consensus 114 I~~N~i~~~~~GI~l~~s~--------~n~I~~N~i-~~n~~~Gi~~~~~s~~n~I~~N~f~N 167 (236)
T PF05048_consen 114 ISNNTISNNGYGIYLSSSS--------NNTITGNTI-SNNTDYGIYFLSGSSGNTIYNNNFNN 167 (236)
T ss_pred EECcEEeCCCEEEEEEeCC--------CCEEECeEE-eCCCccceEEeccCCCCEEECCCccC
Confidence 9999998777777665543 688889998 455333334 22 2357888888843
No 22
>PLN02218 polygalacturonase ADPG
Probab=97.03 E-value=0.022 Score=56.22 Aligned_cols=85 Identities=18% Similarity=0.293 Sum_probs=67.9
Q ss_pred EEEeeeceEEEEceEEEecccCCCccccCCCCCCCCccccCCCeEEeeCCeeEEEeceeccC-----CCCCeEEeeeCCc
Q 023995 32 ITIQYVTNIIIHGLNIHDCKKGGNAMVRDSPRHFGWRTVSDGDGVSIFGGTHIWVDHCSLSN-----CDDGLVDAIHGST 106 (274)
Q Consensus 32 l~i~~~~NVIIrnl~i~~~~~~~~~~~~~~~~~~~~~~~~~~DaI~i~~~~nVWIDHcs~s~-----~~Dglidv~~~s~ 106 (274)
|.+.+++|+.|++|++++. ..=.|.+..++||.|++.++.. -.|| ||+. .++
T Consensus 195 i~f~~~~nv~I~gitl~nS---------------------p~w~i~~~~~~nV~i~~v~I~a~~~spNTDG-Idi~-ss~ 251 (431)
T PLN02218 195 LTFYNSKSLIVKNLRVRNA---------------------QQIQISIEKCSNVQVSNVVVTAPADSPNTDG-IHIT-NTQ 251 (431)
T ss_pred EEEEccccEEEeCeEEEcC---------------------CCEEEEEEceeeEEEEEEEEeCCCCCCCCCc-Eeec-ccc
Confidence 6678999999999999963 1235888999999999999875 3555 5885 689
Q ss_pred eEEEEcceecccCeeeEecCCCcccCCCcceEEEEeeEEc
Q 023995 107 AITISNNFMTHHDKVMLLGHSDTYTQDKNMQVTIAFNHFG 146 (274)
Q Consensus 107 ~vTvS~~~f~~h~k~~l~G~sd~~~~d~~~~vT~hhN~f~ 146 (274)
+|+|++|.|...+-+.-|.+..+ .|++.++.+.
T Consensus 252 nV~I~n~~I~tGDDcIaIksgs~-------nI~I~n~~c~ 284 (431)
T PLN02218 252 NIRVSNSIIGTGDDCISIESGSQ-------NVQINDITCG 284 (431)
T ss_pred eEEEEccEEecCCceEEecCCCc-------eEEEEeEEEE
Confidence 99999999998887777765432 7888888874
No 23
>PF12708 Pectate_lyase_3: Pectate lyase superfamily protein; PDB: 3EQN_A 3EQO_A 2PYG_A 2PYH_A 3SUC_A 3GQ7_A 3GQ9_A 3GQA_A 3GQ8_A 2VBE_A ....
Probab=96.92 E-value=0.014 Score=50.34 Aligned_cols=156 Identities=17% Similarity=0.181 Sum_probs=81.7
Q ss_pred EecceEEcCCCceEEeecCce-EEe--c-CCcE------E-Eee-ece--EEEEceEEEecccCCCccccCCCCCCCCcc
Q 023995 4 RLKEELIMNSFKTIDGRGASV-HIA--G-GPCI------T-IQY-VTN--IIIHGLNIHDCKKGGNAMVRDSPRHFGWRT 69 (274)
Q Consensus 4 ~L~~~L~v~snkTI~G~G~~~-~i~--~-G~~l------~-i~~-~~N--VIIrnl~i~~~~~~~~~~~~~~~~~~~~~~ 69 (274)
++.++|.+.|+.||.|.|... .+. + ...+ . +.. ..+ +-|+||.|.......
T Consensus 44 ~i~~~l~~~s~v~l~G~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~nl~i~~~~~~~--------------- 108 (225)
T PF12708_consen 44 RISGTLIIPSNVTLRGAGGNSTILFLSGSGDSFSVVPGIGVFDSGNSNIGIQIRNLTIDGNGIDP--------------- 108 (225)
T ss_dssp EESS-EEE-TTEEEEESSTTTEEEEECTTTSTSCCEEEEEECCSCSCCEEEEEEEEEEEETCGCE---------------
T ss_pred EEeCCeEcCCCeEEEccCCCeeEEEecCcccccccccceeeeecCCCCceEEEEeeEEEcccccC---------------
Confidence 567789999999999997743 333 1 1111 1 111 112 449999998643210
Q ss_pred ccCCCeEEeeCCeeEEEeceeccCCCCCeEEeeeCCceEEEE------cceecccCeeeEecCCCcccCCCcceEEEEee
Q 023995 70 VSDGDGVSIFGGTHIWVDHCSLSNCDDGLVDAIHGSTAITIS------NNFMTHHDKVMLLGHSDTYTQDKNMQVTIAFN 143 (274)
Q Consensus 70 ~~~~DaI~i~~~~nVWIDHcs~s~~~Dglidv~~~s~~vTvS------~~~f~~h~k~~l~G~sd~~~~d~~~~vT~hhN 143 (274)
....++|.+..+++++|++|++..+..-.+.+. ..+..++. +..|+++.. .+.+...
T Consensus 109 ~~~~~~i~~~~~~~~~i~nv~~~~~~~~~i~~~-~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~ 171 (225)
T PF12708_consen 109 NNNNNGIRFNSSQNVSISNVRIENSGGDGIYFN-TGTDYRIIGSTHVSGIFIDNGSN----------------NVIVNNC 171 (225)
T ss_dssp -SCEEEEEETTEEEEEEEEEEEES-SS-SEEEE-CCEECEEECCEEEEEEEEESCEE----------------EEEEECE
T ss_pred CCCceEEEEEeCCeEEEEeEEEEccCccEEEEE-ccccCcEeecccceeeeecccee----------------EEEECCc
Confidence 012477888899999999999998755555554 12221221 222222110 1111121
Q ss_pred EEcCCCcCCCceeec--cEEEEEcceecCccceEEeeCCCceEEeeccEEeCCC
Q 023995 144 HFGEGLVQRIPRCRH--GYFHVVNNDYTHWEMYAIGGSANPTINSQGNRFAAPD 195 (274)
Q Consensus 144 ~f~~~~~~R~Pr~R~--G~~hv~NN~~~~~~~yaig~~~~~~i~~e~N~F~~~~ 195 (274)
++ . ..+.. +.. -.+-+.|+++.+....+|....+..+.+++|.|+...
T Consensus 172 ~~-~--~~~~g-~~~~~~~~~i~n~~~~~~~~~gi~i~~~~~~~i~n~~i~~~~ 221 (225)
T PF12708_consen 172 IF-N--GGDNG-IILGNNNITISNNTFEGNCGNGINIEGGSNIIISNNTIENCD 221 (225)
T ss_dssp EE-E--SSSCS-EECEEEEEEEECEEEESSSSESEEEEECSEEEEEEEEEESSS
T ss_pred cc-c--CCCce-eEeecceEEEEeEEECCccceeEEEECCeEEEEEeEEEECCc
Confidence 12 1 11111 111 2455667776665556666666666788888887653
No 24
>PLN03010 polygalacturonase
Probab=96.87 E-value=0.056 Score=52.99 Aligned_cols=73 Identities=21% Similarity=0.289 Sum_probs=59.6
Q ss_pred EEEeeeceEEEEceEEEecccCCCccccCCCCCCCCccccCCCeEEeeCCeeEEEeceeccC-----CCCCeEEeeeCCc
Q 023995 32 ITIQYVTNIIIHGLNIHDCKKGGNAMVRDSPRHFGWRTVSDGDGVSIFGGTHIWVDHCSLSN-----CDDGLVDAIHGST 106 (274)
Q Consensus 32 l~i~~~~NVIIrnl~i~~~~~~~~~~~~~~~~~~~~~~~~~~DaI~i~~~~nVWIDHcs~s~-----~~Dglidv~~~s~ 106 (274)
|.+.+++||.|++|++++. ..=.|.+.++++|.|++.++.. -.|| +|+. .++
T Consensus 160 l~~~~~~nv~v~gitl~ns---------------------p~~~i~i~~~~nv~i~~i~I~a~~~s~NTDG-iDi~-~s~ 216 (409)
T PLN03010 160 LHISKCDNLTINGITSIDS---------------------PKNHISIKTCNYVAISKINILAPETSPNTDG-IDIS-YST 216 (409)
T ss_pred EEEEeecCeEEeeeEEEcC---------------------CceEEEEeccccEEEEEEEEeCCCCCCCCCc-eeee-ccc
Confidence 6788999999999999963 1234788899999999999865 3566 5775 689
Q ss_pred eEEEEcceecccCeeeEecCC
Q 023995 107 AITISNNFMTHHDKVMLLGHS 127 (274)
Q Consensus 107 ~vTvS~~~f~~h~k~~l~G~s 127 (274)
+|+|++|.+...+-+.-+.+.
T Consensus 217 nV~I~n~~I~~gDDcIaiksg 237 (409)
T PLN03010 217 NINIFDSTIQTGDDCIAINSG 237 (409)
T ss_pred eEEEEeeEEecCCCeEEecCC
Confidence 999999999998888777654
No 25
>PLN03003 Probable polygalacturonase At3g15720
Probab=96.75 E-value=0.02 Score=56.73 Aligned_cols=86 Identities=15% Similarity=0.255 Sum_probs=68.1
Q ss_pred cEEEeeeceEEEEceEEEecccCCCccccCCCCCCCCccccCCCeEEeeCCeeEEEeceeccCC-----CCCeEEeeeCC
Q 023995 31 CITIQYVTNIIIHGLNIHDCKKGGNAMVRDSPRHFGWRTVSDGDGVSIFGGTHIWVDHCSLSNC-----DDGLVDAIHGS 105 (274)
Q Consensus 31 ~l~i~~~~NVIIrnl~i~~~~~~~~~~~~~~~~~~~~~~~~~~DaI~i~~~~nVWIDHcs~s~~-----~Dglidv~~~s 105 (274)
.|.+.+++|+.|++|++++. ..=.|.+.++++|.|++.++... +|| ||+. .+
T Consensus 140 ~l~f~~~~nv~I~gitl~NS---------------------p~w~i~i~~c~nV~i~~l~I~ap~~spNTDG-IDi~-~S 196 (456)
T PLN03003 140 ALKFRSCNNLRLSGLTHLDS---------------------PMAHIHISECNYVTISSLRINAPESSPNTDG-IDVG-AS 196 (456)
T ss_pred EEEEEecCCcEEeCeEEecC---------------------CcEEEEEeccccEEEEEEEEeCCCCCCCCCc-Eeec-Cc
Confidence 36778999999999999963 22357888999999999998763 565 5885 68
Q ss_pred ceEEEEcceecccCeeeEecCCCcccCCCcceEEEEeeEEc
Q 023995 106 TAITISNNFMTHHDKVMLLGHSDTYTQDKNMQVTIAFNHFG 146 (274)
Q Consensus 106 ~~vTvS~~~f~~h~k~~l~G~sd~~~~d~~~~vT~hhN~f~ 146 (274)
++|+|.+|.+...+-+.-+++..+ +|++-++.+.
T Consensus 197 ~nV~I~n~~I~tGDDCIaiksgs~-------NI~I~n~~c~ 230 (456)
T PLN03003 197 SNVVIQDCIIATGDDCIAINSGTS-------NIHISGIDCG 230 (456)
T ss_pred ceEEEEecEEecCCCeEEeCCCCc-------cEEEEeeEEE
Confidence 999999999998888877765532 6777777763
No 26
>PF00295 Glyco_hydro_28: Glycosyl hydrolases family 28; InterPro: IPR000743 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 28 GH28 from CAZY comprises enzymes with several known activities; polygalacturonase (3.2.1.15 from EC); exo-polygalacturonase (3.2.1.67 from EC); exo-polygalacturonase (3.2.1.82 from EC); rhamnogalacturonase (EC not defined). Polygalacturonase (PG) (pectinase) [, ] catalyses the random hydrolysis of 1,4-alpha-D-galactosiduronic linkages in pectate and other galacturonans. In fruit, polygalacturonase plays an important role in cell wall metabolism during ripening. In plant bacterial pathogens such as Erwinia carotovora or Ralstonia solanacearum (Pseudomonas solanacearum) and fungal pathogens such as Aspergillus niger, polygalacturonase is involved in maceration and soft-rotting of plant tissue. Exo-poly-alpha-D-galacturonosidase (3.2.1.82 from EC) (exoPG) [] hydrolyses peptic acid from the non-reducing end, releasing digalacturonate. PG and exoPG share a few regions of sequence similarity, and belong to family 28 of the glycosyl hydrolases.; GO: 0004650 polygalacturonase activity, 0005975 carbohydrate metabolic process; PDB: 1KCC_A 1KCD_A 1K5C_A 1HG8_A 2IQ7_A 2UVF_B 1RMG_A 1CZF_B 3JUR_C 1BHE_A ....
Probab=96.68 E-value=0.023 Score=53.68 Aligned_cols=108 Identities=20% Similarity=0.316 Sum_probs=74.7
Q ss_pred EEcCCCceEEeecCceEE-ec---------CCcEEEeeeceEEEEceEEEecccCCCccccCCCCCCCCccccCCCeEEe
Q 023995 9 LIMNSFKTIDGRGASVHI-AG---------GPCITIQYVTNIIIHGLNIHDCKKGGNAMVRDSPRHFGWRTVSDGDGVSI 78 (274)
Q Consensus 9 L~v~snkTI~G~G~~~~i-~~---------G~~l~i~~~~NVIIrnl~i~~~~~~~~~~~~~~~~~~~~~~~~~~DaI~i 78 (274)
+.+...=||+|+|..-.- .+ -..|.+.+++|+.|++|++++.. .=.+.+
T Consensus 62 i~i~G~G~IDG~G~~w~~~~~~~~~~~~~rp~~i~~~~~~~~~i~~i~~~nsp---------------------~w~~~~ 120 (326)
T PF00295_consen 62 ITITGKGTIDGNGQAWWDGSGDANNNGQRRPRLIRFNNCKNVTIEGITIRNSP---------------------FWHIHI 120 (326)
T ss_dssp EECTTSSEEE--GGGTCSSCTTHCCSSSSSSESEEEEEEEEEEEESEEEES-S---------------------SESEEE
T ss_pred EEecCCceEcCchhhhhccccccccccccccceeeeeeecceEEEeeEecCCC---------------------eeEEEE
Confidence 444444589998762000 00 01377889999999999999631 124788
Q ss_pred eCCeeEEEeceeccC-----CCCCeEEeeeCCceEEEEcceecccCeeeEecCCCcccCCCcceEEEEeeEEc
Q 023995 79 FGGTHIWVDHCSLSN-----CDDGLVDAIHGSTAITISNNFMTHHDKVMLLGHSDTYTQDKNMQVTIAFNHFG 146 (274)
Q Consensus 79 ~~~~nVWIDHcs~s~-----~~Dglidv~~~s~~vTvS~~~f~~h~k~~l~G~sd~~~~d~~~~vT~hhN~f~ 146 (274)
..++||+|++.++.. -.|| +|+. ++++|+|.+|.+...+-+.-+.+... .|++.+++|.
T Consensus 121 ~~~~nv~i~~i~I~~~~~~~NtDG-id~~-~s~nv~I~n~~i~~gDD~Iaiks~~~-------ni~v~n~~~~ 184 (326)
T PF00295_consen 121 NDCDNVTISNITINNPANSPNTDG-IDID-SSKNVTIENCFIDNGDDCIAIKSGSG-------NILVENCTCS 184 (326)
T ss_dssp ESEEEEEEESEEEEEGGGCTS--S-EEEE-SEEEEEEESEEEESSSESEEESSEEC-------EEEEESEEEE
T ss_pred EccCCeEEcceEEEecCCCCCcce-EEEE-eeeEEEEEEeecccccCccccccccc-------ceEEEeEEEe
Confidence 899999999999864 3566 4775 68999999999998887776665532 7888888883
No 27
>PLN02188 polygalacturonase/glycoside hydrolase family protein
Probab=96.57 E-value=0.031 Score=54.70 Aligned_cols=134 Identities=16% Similarity=0.159 Sum_probs=87.6
Q ss_pred EEEeeeceEEEEceEEEecccCCCccccCCCCCCCCccccCCCeEEeeCCeeEEEeceeccCC-----CCCeEEeeeCCc
Q 023995 32 ITIQYVTNIIIHGLNIHDCKKGGNAMVRDSPRHFGWRTVSDGDGVSIFGGTHIWVDHCSLSNC-----DDGLVDAIHGST 106 (274)
Q Consensus 32 l~i~~~~NVIIrnl~i~~~~~~~~~~~~~~~~~~~~~~~~~~DaI~i~~~~nVWIDHcs~s~~-----~Dglidv~~~s~ 106 (274)
|.+.+++||.|++|+|++. ..=.|.+..+++|.|++.++... .|| ||+. .++
T Consensus 158 i~f~~~~nv~i~gitl~nS---------------------p~w~i~~~~~~~v~i~~v~I~~~~~spNtDG-idi~-~s~ 214 (404)
T PLN02188 158 VKFVNMNNTVVRGITSVNS---------------------KFFHIALVECRNFKGSGLKISAPSDSPNTDG-IHIE-RSS 214 (404)
T ss_pred EEEEeeeeEEEeCeEEEcC---------------------CCeEEEEEccccEEEEEEEEeCCCCCCCCCc-Eeee-Ccc
Confidence 5678999999999999963 12357888999999999998763 555 5775 689
Q ss_pred eEEEEcceecccCeeeEecCCCcccCCCcceEEEEeeEEcCCCcC-------CCce-eeccEEEEEcceecCccceEEee
Q 023995 107 AITISNNFMTHHDKVMLLGHSDTYTQDKNMQVTIAFNHFGEGLVQ-------RIPR-CRHGYFHVVNNDYTHWEMYAIGG 178 (274)
Q Consensus 107 ~vTvS~~~f~~h~k~~l~G~sd~~~~d~~~~vT~hhN~f~~~~~~-------R~Pr-~R~G~~hv~NN~~~~~~~yaig~ 178 (274)
+|+|.+|.|...+-+.-++...+ +|++-++.+. .... +.+- -....+.+.|+.+.+-. +++..
T Consensus 215 nV~I~n~~I~~GDDcIaiksg~~-------nI~I~n~~c~-~ghGisiGSlG~~~~~~~V~nV~v~n~~~~~t~-~Giri 285 (404)
T PLN02188 215 GVYISDSRIGTGDDCISIGQGNS-------QVTITRIRCG-PGHGISVGSLGRYPNEGDVTGLVVRDCTFTGTT-NGIRI 285 (404)
T ss_pred cEEEEeeEEeCCCcEEEEccCCc-------cEEEEEEEEc-CCCcEEeCCCCCCCcCCcEEEEEEEeeEEECCC-cEEEE
Confidence 99999999998888877754432 6777777663 2111 0000 01124567777776531 22221
Q ss_pred ---------CCCceEEeeccEEeCCCCC
Q 023995 179 ---------SANPTINSQGNRFAAPDRA 197 (274)
Q Consensus 179 ---------~~~~~i~~e~N~F~~~~~~ 197 (274)
+.-..|.+++-.++....|
T Consensus 286 Kt~~g~~~~G~v~nI~f~ni~m~~v~~p 313 (404)
T PLN02188 286 KTWANSPGKSAATNMTFENIVMNNVTNP 313 (404)
T ss_pred EEecCCCCceEEEEEEEEeEEecCccce
Confidence 1123566677666665554
No 28
>PLN02793 Probable polygalacturonase
Probab=96.31 E-value=0.059 Score=53.35 Aligned_cols=63 Identities=11% Similarity=0.207 Sum_probs=49.3
Q ss_pred eEEeeCCeeEEEeceeccC-----CCCCeEEeeeCCceEEEEcceecccCeeeEecCCCcccCCCcceEEEEeeEEc
Q 023995 75 GVSIFGGTHIWVDHCSLSN-----CDDGLVDAIHGSTAITISNNFMTHHDKVMLLGHSDTYTQDKNMQVTIAFNHFG 146 (274)
Q Consensus 75 aI~i~~~~nVWIDHcs~s~-----~~Dglidv~~~s~~vTvS~~~f~~h~k~~l~G~sd~~~~d~~~~vT~hhN~f~ 146 (274)
.|.+..++||.|++.++.. -.|| ||+. .+++|+|++|.+...+-...+.+..+ +|++.++.+.
T Consensus 202 ~i~~~~~~nv~i~~l~I~~p~~spNTDG-Idi~-~s~nV~I~n~~I~~gDDcIaik~~s~-------nI~I~n~~c~ 269 (443)
T PLN02793 202 HIAFTNCRRVTISGLKVIAPATSPNTDG-IHIS-ASRGVVIKDSIVRTGDDCISIVGNSS-------RIKIRNIACG 269 (443)
T ss_pred EEEEEccCcEEEEEEEEECCCCCCCCCc-Eeee-ccceEEEEeCEEeCCCCeEEecCCcC-------CEEEEEeEEe
Confidence 4777889999999999975 3566 5775 68999999999998888877754322 7888887773
No 29
>smart00656 Amb_all Amb_all domain.
Probab=96.11 E-value=0.23 Score=43.57 Aligned_cols=115 Identities=14% Similarity=0.171 Sum_probs=69.5
Q ss_pred CeEEeeCCeeEEEeceeccCCCC------CeEEeeeCCceEEEEcceecccCeeeEecC----CCccc--CCCcceEEEE
Q 023995 74 DGVSIFGGTHIWVDHCSLSNCDD------GLVDAIHGSTAITISNNFMTHHDKVMLLGH----SDTYT--QDKNMQVTIA 141 (274)
Q Consensus 74 DaI~i~~~~nVWIDHcs~s~~~D------glidv~~~s~~vTvS~~~f~~h~k~~l~G~----sd~~~--~d~~~~vT~h 141 (274)
-+|.+.+++||+|=+.+|....+ -.|.+ .++++|=|-+|.|+... + +|. .|... ....-.+|+.
T Consensus 32 ~gl~i~~~~NVIirnl~i~~~~~~~~~~~D~i~~-~~~~~VwIDHct~s~~~--~-~~~~~~~~D~~~di~~~s~~vTvs 107 (190)
T smart00656 32 GGLTIKSVSNVIIRNLTIHDPKPVYGSDGDAISI-DGSSNVWIDHVSLSGCT--V-TGFGDDTYDGLIDIKNGSTYVTIS 107 (190)
T ss_pred eEEEEEecceEEEeCCEEECCccCCCCCCCEEEE-eCCCeEEEEccEeEcce--e-ccCCCCCCCccEEECcccccEEEE
Confidence 34666678899999999998533 25566 46888888888888641 1 111 11110 1123479999
Q ss_pred eeEEcCCCcCCCceeecc---------EEEEEcceecCccceEEeeCCCceEEeeccEEeCCC
Q 023995 142 FNHFGEGLVQRIPRCRHG---------YFHVVNNDYTHWEMYAIGGSANPTINSQGNRFAAPD 195 (274)
Q Consensus 142 hN~f~~~~~~R~Pr~R~G---------~~hv~NN~~~~~~~yaig~~~~~~i~~e~N~F~~~~ 195 (274)
.|+|. + ....=.+..+ .+=+.+|+|.+-..-+-..+.+ ++-+.||||.+..
T Consensus 108 ~~~f~-~-h~~~~liG~~d~~~~~~~~~vT~h~N~~~~~~~R~P~~r~g-~~hv~NN~~~n~~ 167 (190)
T smart00656 108 NNYFH-N-HWKVMLLGHSDSDTDDGKMRVTIAHNYFGNLRQRAPRVRFG-YVHVYNNYYTGWT 167 (190)
T ss_pred CceEe-c-CCEEEEEccCCCccccccceEEEECcEEcCcccCCCcccCC-EEEEEeeEEeCcc
Confidence 99994 2 2222222221 4677889887643332222223 7888999998754
No 30
>PF12708 Pectate_lyase_3: Pectate lyase superfamily protein; PDB: 3EQN_A 3EQO_A 2PYG_A 2PYH_A 3SUC_A 3GQ7_A 3GQ9_A 3GQA_A 3GQ8_A 2VBE_A ....
Probab=96.08 E-value=0.029 Score=48.49 Aligned_cols=105 Identities=23% Similarity=0.333 Sum_probs=57.9
Q ss_pred cEEEeeeceEEEEceEEEecccCCCccccCCCCCCCCccccCCC-eEEeeCC-eeEEEeceeccCCCCCeEEeeeCCceE
Q 023995 31 CITIQYVTNIIIHGLNIHDCKKGGNAMVRDSPRHFGWRTVSDGD-GVSIFGG-THIWVDHCSLSNCDDGLVDAIHGSTAI 108 (274)
Q Consensus 31 ~l~i~~~~NVIIrnl~i~~~~~~~~~~~~~~~~~~~~~~~~~~D-aI~i~~~-~nVWIDHcs~s~~~Dglidv~~~s~~v 108 (274)
++.+..+.|+.|+|+++++....+ -.+. ..+.+.. ...... .+.++.+ .++++..|.+..+.+| + ..+.+++
T Consensus 114 ~i~~~~~~~~~i~nv~~~~~~~~~-i~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~--~~~~~~~ 187 (225)
T PF12708_consen 114 GIRFNSSQNVSISNVRIENSGGDG-IYFN-TGTDYRI-IGSTHVSGIFIDNGSNNVIVNNCIFNGGDNG-I--ILGNNNI 187 (225)
T ss_dssp EEEETTEEEEEEEEEEEES-SS-S-EEEE-CCEECEE-ECCEEEEEEEEESCEEEEEEECEEEESSSCS-E--ECEEEEE
T ss_pred EEEEEeCCeEEEEeEEEEccCccE-EEEE-ccccCcE-eecccceeeeeccceeEEEECCccccCCCce-e--EeecceE
Confidence 466777999999999999753210 0000 0000000 000011 4444443 3455577777777777 3 3334789
Q ss_pred EEEcceecc-cCeeeEecCCCcccCCCcceEEEEeeEEcCCCc
Q 023995 109 TISNNFMTH-HDKVMLLGHSDTYTQDKNMQVTIAFNHFGEGLV 150 (274)
Q Consensus 109 TvS~~~f~~-h~k~~l~G~sd~~~~d~~~~vT~hhN~f~~~~~ 150 (274)
+++||.|.. ...+..+-... .+++.+|.| .+|.
T Consensus 188 ~i~n~~~~~~~~~gi~i~~~~--------~~~i~n~~i-~~~~ 221 (225)
T PF12708_consen 188 TISNNTFEGNCGNGINIEGGS--------NIIISNNTI-ENCD 221 (225)
T ss_dssp EEECEEEESSSSESEEEEECS--------EEEEEEEEE-ESSS
T ss_pred EEEeEEECCccceeEEEECCe--------EEEEEeEEE-ECCc
Confidence 999999886 44554342221 588888888 5664
No 31
>PLN02480 Probable pectinesterase
Probab=95.91 E-value=0.11 Score=49.96 Aligned_cols=101 Identities=19% Similarity=0.353 Sum_probs=66.5
Q ss_pred eEEec-----ceEEc---CCCceEEeecCc-eEEec---------CCcEEEeeeceEEEEceEEEecccCCCccccCCCC
Q 023995 2 TIRLK-----EELIM---NSFKTIDGRGAS-VHIAG---------GPCITIQYVTNIIIHGLNIHDCKKGGNAMVRDSPR 63 (274)
Q Consensus 2 ~I~L~-----~~L~v---~snkTI~G~G~~-~~i~~---------G~~l~i~~~~NVIIrnl~i~~~~~~~~~~~~~~~~ 63 (274)
+|.|+ +.|.| ++|+||.|.|.. ..|.+ +..|.+ .+++++++||+|++-.+.+..
T Consensus 79 ~I~Ik~GvY~E~V~I~~~kp~ItL~G~g~~~TvI~~~~~~~~~~~saTvtV-~a~~f~a~nLTf~Nta~~g~~------- 150 (343)
T PLN02480 79 IVHLRKGVYREKVHIPENKPFIFMRGNGKGRTSIVWSQSSSDNAASATFTV-EAPHFVAFGISIRNDAPTGMA------- 150 (343)
T ss_pred EEEEcCcEEEEEEEECCCCceEEEEecCCCCeEEEccccccCCCCceEEEE-ECCCEEEEeeEEEecCCCCCC-------
Confidence 46666 45777 478899998743 34442 223555 689999999999986432110
Q ss_pred CCCCccccCCCeEEee-CCeeEEEeceeccCCCCCeEEeeeCCceEEEEcceeccc
Q 023995 64 HFGWRTVSDGDGVSIF-GGTHIWVDHCSLSNCDDGLVDAIHGSTAITISNNFMTHH 118 (274)
Q Consensus 64 ~~~~~~~~~~DaI~i~-~~~nVWIDHcs~s~~~Dglidv~~~s~~vTvS~~~f~~h 118 (274)
...+.-|+.+. .+.++-+.+|.|....|=|++-. ..--..+|++..+
T Consensus 151 -----~~~~~QAVAl~v~gDra~f~~c~f~G~QDTLy~~~---gR~yf~~C~IeG~ 198 (343)
T PLN02480 151 -----FTSENQSVAAFVGADKVAFYHCAFYSTHNTLFDYK---GRHYYHSCYIQGS 198 (343)
T ss_pred -----CCCCCceEEEEecCCcEEEEeeEEecccceeEeCC---CCEEEEeCEEEee
Confidence 01245577775 58899999999999999888642 2333446666533
No 32
>COG5434 PGU1 Endopygalactorunase [Cell envelope biogenesis, outer membrane]
Probab=95.08 E-value=0.099 Score=52.93 Aligned_cols=101 Identities=17% Similarity=0.232 Sum_probs=67.7
Q ss_pred EEeeeceEEEEceEEEecccCCCccccCCCCCCCCccccCCCeEEeeCCeeEEEeceeccCCCCCeEEee----------
Q 023995 33 TIQYVTNIIIHGLNIHDCKKGGNAMVRDSPRHFGWRTVSDGDGVSIFGGTHIWVDHCSLSNCDDGLVDAI---------- 102 (274)
Q Consensus 33 ~i~~~~NVIIrnl~i~~~~~~~~~~~~~~~~~~~~~~~~~~DaI~i~~~~nVWIDHcs~s~~~Dglidv~---------- 102 (274)
....++|+.|+||+|..-.. ...|+|.+..++||-|+-|+|+.+.| .+-++
T Consensus 265 h~~~~~nl~~~nl~I~~~~~------------------~NtDG~d~~sc~NvlI~~~~fdtgDD-~I~iksg~~~~~~~~ 325 (542)
T COG5434 265 HPVDCDNLTFRNLTIDANRF------------------DNTDGFDPGSCSNVLIEGCRFDTGDD-CIAIKSGAGLDGKKG 325 (542)
T ss_pred eeecccCceecceEEECCCC------------------CCCCccccccceeEEEeccEEecCCc-eEEeecccCCccccc
Confidence 34566777777777764211 26799999999999999999999443 33332
Q ss_pred -eCCceEEEEcceecccCeeeEecCCCcccCCCcceEEEEeeEEcCCCcCCCceee
Q 023995 103 -HGSTAITISNNFMTHHDKVMLLGHSDTYTQDKNMQVTIAFNHFGEGLVQRIPRCR 157 (274)
Q Consensus 103 -~~s~~vTvS~~~f~~h~k~~l~G~sd~~~~d~~~~vT~hhN~f~~~~~~R~Pr~R 157 (274)
.-+.+|+|++|+|..-.-+..+|+.- .-+-..|++-.|.| .+ ..|.=|+.
T Consensus 326 ~~~~~~i~i~~c~~~~ghG~~v~Gse~---~ggv~ni~ved~~~-~~-~d~GLRik 376 (542)
T COG5434 326 YGPSRNIVIRNCYFSSGHGGLVLGSEM---GGGVQNITVEDCVM-DN-TDRGLRIK 376 (542)
T ss_pred ccccccEEEecceecccccceEeeeec---CCceeEEEEEeeee-cc-Ccceeeee
Confidence 33467999999999544444454432 12345799999999 44 66766663
No 33
>PLN02682 pectinesterase family protein
Probab=94.31 E-value=4.1 Score=39.57 Aligned_cols=86 Identities=17% Similarity=0.294 Sum_probs=54.8
Q ss_pred eEEec-----ceEEc---CCCceEEeecCce-EEec----------C--------CcEEEeeeceEEEEceEEEecccCC
Q 023995 2 TIRLK-----EELIM---NSFKTIDGRGASV-HIAG----------G--------PCITIQYVTNIIIHGLNIHDCKKGG 54 (274)
Q Consensus 2 ~I~L~-----~~L~v---~snkTI~G~G~~~-~i~~----------G--------~~l~i~~~~NVIIrnl~i~~~~~~~ 54 (274)
+|.++ +.|.| ++|+||.|.|.+- .|.. | +.+.+ .+++++.+||+|++-.+..
T Consensus 101 vI~Ik~G~Y~EkV~Ip~~k~~Itl~G~g~~~TiIt~~~~a~~~~~~g~~~gT~~SAT~~v-~a~~F~a~nlTf~Nt~~~~ 179 (369)
T PLN02682 101 VIKVNAGTYREKVNIPPLKAYITLEGAGADKTIIQWGDTADTPGPGGRPLGTYGSATFAV-NSPYFIAKNITFKNTAPVP 179 (369)
T ss_pred EEEEeCceeeEEEEEeccCceEEEEecCCCccEEEeccccCccCCCCCccccccceEEEE-ECCCeEEEeeEEEcccccC
Confidence 46665 45666 4799999998643 3321 1 12334 6899999999999854310
Q ss_pred CccccCCCCCCCCccccCCCeEEee-CCeeEEEeceeccCCCCCeEE
Q 023995 55 NAMVRDSPRHFGWRTVSDGDGVSIF-GGTHIWVDHCSLSNCDDGLVD 100 (274)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~DaI~i~-~~~nVWIDHcs~s~~~Dglid 100 (274)
+ .| ..+.-|+.+. .+.++-+.+|.|....|=|.+
T Consensus 180 ------~---~g---~~g~QAVAL~v~gDr~~fy~C~f~G~QDTLy~ 214 (369)
T PLN02682 180 ------P---PG---ALGKQAVALRISADTAAFYGCKFLGAQDTLYD 214 (369)
T ss_pred ------C---CC---CCcccEEEEEecCCcEEEEcceEeccccceEE
Confidence 0 01 1234566665 478889999999887665544
No 34
>PLN03043 Probable pectinesterase/pectinesterase inhibitor; Provisional
Probab=93.75 E-value=1.5 Score=44.55 Aligned_cols=97 Identities=19% Similarity=0.278 Sum_probs=64.7
Q ss_pred eEEec-----ceEEc---CCCceEEeecCceE-Eec------C------CcEEEeeeceEEEEceEEEecccCCCccccC
Q 023995 2 TIRLK-----EELIM---NSFKTIDGRGASVH-IAG------G------PCITIQYVTNIIIHGLNIHDCKKGGNAMVRD 60 (274)
Q Consensus 2 ~I~L~-----~~L~v---~snkTI~G~G~~~~-i~~------G------~~l~i~~~~NVIIrnl~i~~~~~~~~~~~~~ 60 (274)
+|.++ +.|.| +.|+||+|.|.+-+ |++ | +.+.+ .++++|.|||.|++-...
T Consensus 257 vI~vk~G~Y~E~V~i~~~k~~i~l~G~g~~~tiIt~~~~~~dg~~T~~saT~~v-~~~~F~a~~it~~Ntag~------- 328 (538)
T PLN03043 257 VIYAREGYYEEYVVVPKNKKNIMLIGDGINKTIITGNHSVVDGWTTFNSSTFAV-SGERFVAVDVTFRNTAGP------- 328 (538)
T ss_pred EEEEcCeeeEEEEEeCCCCCcEEEEecCCCCeEEEeCCccCCCCccccceEEEE-ECCCEEEEeeEEEECCCC-------
Confidence 56665 34566 37899999986543 332 2 12333 679999999999984310
Q ss_pred CCCCCCCccccCCCeEEee-CCeeEEEeceeccCCCC-----------------CeEEeeeCCceEEEEcceec
Q 023995 61 SPRHFGWRTVSDGDGVSIF-GGTHIWVDHCSLSNCDD-----------------GLVDAIHGSTAITISNNFMT 116 (274)
Q Consensus 61 ~~~~~~~~~~~~~DaI~i~-~~~nVWIDHcs~s~~~D-----------------glidv~~~s~~vTvS~~~f~ 116 (274)
...-|+.++ .+...-+.+|+|....| |.+|+.-|.-.+-+++|.|.
T Consensus 329 ----------~~~QAvAlrv~~D~~~f~~C~~~gyQDTLy~~~~rq~y~~c~I~GtVDFIFG~a~avfq~c~i~ 392 (538)
T PLN03043 329 ----------EKHQAVALRNNADLSTFYRCSFEGYQDTLYVHSLRQFYRECDIYGTVDFIFGNAAAIFQNCNLY 392 (538)
T ss_pred ----------CCCceEEEEEcCCcEEEEeeEEeccCcccccCCCcEEEEeeEEeeccceEeecceeeeeccEEE
Confidence 234566666 46778889999988655 45566556666777777775
No 35
>PLN02432 putative pectinesterase
Probab=93.68 E-value=0.74 Score=43.29 Aligned_cols=103 Identities=21% Similarity=0.358 Sum_probs=65.8
Q ss_pred eEEec-----ceEEc---CCCceEEeecCceE-Eec--------CCcEEEeeeceEEEEceEEEecccCCCccccCCCCC
Q 023995 2 TIRLK-----EELIM---NSFKTIDGRGASVH-IAG--------GPCITIQYVTNIIIHGLNIHDCKKGGNAMVRDSPRH 64 (274)
Q Consensus 2 ~I~L~-----~~L~v---~snkTI~G~G~~~~-i~~--------G~~l~i~~~~NVIIrnl~i~~~~~~~~~~~~~~~~~ 64 (274)
+|.++ +.|.| ++|+||.|.+..-+ |.. .+.+.+ .++|++.+||+|++..+
T Consensus 42 ~I~I~~G~Y~E~V~ip~~k~~itl~G~~~~~TvI~~~~~~~~~~saT~~v-~a~~f~a~nlt~~Nt~g------------ 108 (293)
T PLN02432 42 FIWVKPGIYREKVVVPADKPFITLSGTQASNTIITWNDGGDIFESPTLSV-LASDFVGRFLTIQNTFG------------ 108 (293)
T ss_pred EEEEeCceeEEEEEEeccCceEEEEEcCCCCeEEEecCCcccccceEEEE-ECCCeEEEeeEEEeCCC------------
Confidence 46665 45666 47899999976433 321 123444 68999999999998532
Q ss_pred CCCccccCCCeEEee-CCeeEEEeceeccCCCCCeEEeeeCCceEEEEcceecccCeeeEecCC
Q 023995 65 FGWRTVSDGDGVSIF-GGTHIWVDHCSLSNCDDGLVDAIHGSTAITISNNFMTHHDKVMLLGHS 127 (274)
Q Consensus 65 ~~~~~~~~~DaI~i~-~~~nVWIDHcs~s~~~Dglidv~~~s~~vTvS~~~f~~h~k~~l~G~s 127 (274)
.++-|+.+. .+.++-+.+|.|....|=|++-. ..--..+|++..+-- +++|..
T Consensus 109 ------~~~QAvAl~v~gDr~~f~~c~~~G~QDTLy~~~---gr~yf~~c~I~G~VD-FIFG~g 162 (293)
T PLN02432 109 ------SSGKAVALRVAGDRAAFYGCRILSYQDTLLDDT---GRHYYRNCYIEGATD-FICGNA 162 (293)
T ss_pred ------CCCceEEEEEcCCcEEEEcceEecccceeEECC---CCEEEEeCEEEeccc-EEecCc
Confidence 123466665 47889999999999999887532 233344666654311 245554
No 36
>PLN02416 probable pectinesterase/pectinesterase inhibitor
Probab=93.57 E-value=0.62 Score=47.37 Aligned_cols=81 Identities=15% Similarity=0.315 Sum_probs=53.7
Q ss_pred eEEec-----ceEEc---CCCceEEeecCceEE-ec------C------CcEEEeeeceEEEEceEEEecccCCCccccC
Q 023995 2 TIRLK-----EELIM---NSFKTIDGRGASVHI-AG------G------PCITIQYVTNIIIHGLNIHDCKKGGNAMVRD 60 (274)
Q Consensus 2 ~I~L~-----~~L~v---~snkTI~G~G~~~~i-~~------G------~~l~i~~~~NVIIrnl~i~~~~~~~~~~~~~ 60 (274)
+|.++ +.|.| ++|+||.|.|.+.+| ++ | +.+.+ .+++++.|||.|++-...
T Consensus 261 vI~Ik~GvY~E~V~i~~~k~~i~l~G~g~~~TiIt~~~~~~~g~~T~~saT~~v-~~~~F~a~nitf~Ntag~------- 332 (541)
T PLN02416 261 IIYVREGVYEENVEIPIYKTNIVLIGDGSDVTFITGNRSVVDGWTTFRSATLAV-SGEGFLARDITIENTAGP------- 332 (541)
T ss_pred EEEEeCceeEEEEecCCCCccEEEEecCCCceEEeCCCccCCCCCccceEEEEE-ECCCeEEEeeEEEECCCC-------
Confidence 46665 34566 378999999875433 32 1 12444 689999999999984311
Q ss_pred CCCCCCCccccCCCeEEee-CCeeEEEeceeccCCCCCeEE
Q 023995 61 SPRHFGWRTVSDGDGVSIF-GGTHIWVDHCSLSNCDDGLVD 100 (274)
Q Consensus 61 ~~~~~~~~~~~~~DaI~i~-~~~nVWIDHcs~s~~~Dglid 100 (274)
...-|+.++ .+.++-+-+|.|....|=|.+
T Consensus 333 ----------~~~QAVAl~v~~D~~~fy~c~~~G~QDTLy~ 363 (541)
T PLN02416 333 ----------EKHQAVALRVNADLVALYRCTINGYQDTLYV 363 (541)
T ss_pred ----------CCCceEEEEEcCccEEEEcceEecccchhcc
Confidence 234555555 467888999999887665543
No 37
>PLN02488 probable pectinesterase/pectinesterase inhibitor
Probab=93.32 E-value=2.6 Score=42.52 Aligned_cols=97 Identities=21% Similarity=0.283 Sum_probs=63.7
Q ss_pred eEEec-----ceEEc---CCCceEEeecCceEE-ec------CC------cEEEeeeceEEEEceEEEecccCCCccccC
Q 023995 2 TIRLK-----EELIM---NSFKTIDGRGASVHI-AG------GP------CITIQYVTNIIIHGLNIHDCKKGGNAMVRD 60 (274)
Q Consensus 2 ~I~L~-----~~L~v---~snkTI~G~G~~~~i-~~------G~------~l~i~~~~NVIIrnl~i~~~~~~~~~~~~~ 60 (274)
+|.++ +.|.| ++|+||+|.|.+-+| ++ |. .+.+ .++++|.|||+|++-..
T Consensus 228 vI~Ik~GvY~E~V~I~~~k~nItliGdg~~~TiIt~n~~~~~g~~T~~SATv~v-~g~gF~A~nitf~Ntag-------- 298 (509)
T PLN02488 228 VIYIKTGVYDEIVRIGSTKPNLTLIGDGQDSTIITGNLSASNGKRTFYTATVAS-NGDGFIGIDMCFRNTAG-------- 298 (509)
T ss_pred EEEEeCCeeEEEEEecCCCccEEEEecCCCceEEEEcccccCCCCceeeEEEEE-EcCCeEEEeeEEEECCC--------
Confidence 46665 35666 368899999876443 32 11 1223 67999999999997431
Q ss_pred CCCCCCCccccCCCeEEee-CCeeEEEeceeccCCCCC-----------------eEEeeeCCceEEEEcceec
Q 023995 61 SPRHFGWRTVSDGDGVSIF-GGTHIWVDHCSLSNCDDG-----------------LVDAIHGSTAITISNNFMT 116 (274)
Q Consensus 61 ~~~~~~~~~~~~~DaI~i~-~~~nVWIDHcs~s~~~Dg-----------------lidv~~~s~~vTvS~~~f~ 116 (274)
...+-|+.++ .+...-+-+|.|....|= .+|+.-|.-.+-+++|.+.
T Consensus 299 ---------~~~~QAVALrv~~Dra~Fy~C~f~GyQDTLy~~~~RqyyrdC~I~GtVDFIFG~a~avFq~C~I~ 363 (509)
T PLN02488 299 ---------PAKGPAVALRVSGDMSVIYRCRIEGYQDALYPHRDRQFYRECFITGTVDFICGNAAAVFQFCQIV 363 (509)
T ss_pred ---------CCCCceEEEEecCCcEEEEcceeeccCcceeeCCCCEEEEeeEEeeccceEecceEEEEEccEEE
Confidence 0235677776 478889999999886664 4444445555666777665
No 38
>PF07602 DUF1565: Protein of unknown function (DUF1565); InterPro: IPR011459 These proteins share a region of homology in their N termini, and are found in several phylogenetically diverse bacteria and in the archaeon Methanosarcina acetivorans. Some of these proteins also contain characterised domains such as IPR001119 from INTERPRO (e.g. Q8YWJ6 from SWISSPROT) and IPR005084 from INTERPRO (e.g. Q9FBS2 from SWISSPROT).
Probab=93.25 E-value=2.3 Score=39.08 Aligned_cols=91 Identities=24% Similarity=0.336 Sum_probs=56.6
Q ss_pred eEEcCCCceEEee----cC-ceEEec--------CCc-------EEEeeeceEEEEceEEEecccCCCccccCCCCCCCC
Q 023995 8 ELIMNSFKTIDGR----GA-SVHIAG--------GPC-------ITIQYVTNIIIHGLNIHDCKKGGNAMVRDSPRHFGW 67 (274)
Q Consensus 8 ~L~v~snkTI~G~----G~-~~~i~~--------G~~-------l~i~~~~NVIIrnl~i~~~~~~~~~~~~~~~~~~~~ 67 (274)
||.+++.+||.|. |. .+.+.+ |.+ ++|..+++..|+.++|++..+
T Consensus 47 Pi~i~~gVtl~G~~~~kG~~~il~~g~~~~~~I~g~~~~~~~qn~tI~~~~~~~i~GvtItN~n~--------------- 111 (246)
T PF07602_consen 47 PIIIKPGVTLIGNESNKGQIDILITGGGTGPTISGGGPDLSGQNVTIILANNATISGVTITNPNI--------------- 111 (246)
T ss_pred cEEecCCeEEeecccCCCcceEEecCCceEEeEeccCccccceeEEEEecCCCEEEEEEEEcCCC---------------
Confidence 5888888899885 33 222221 211 445567888888888886421
Q ss_pred ccccCCCeEEeeCCeeEEEeceeccCC-CCCeEEee----eCCceEEEEcceecc
Q 023995 68 RTVSDGDGVSIFGGTHIWVDHCSLSNC-DDGLVDAI----HGSTAITISNNFMTH 117 (274)
Q Consensus 68 ~~~~~~DaI~i~~~~nVWIDHcs~s~~-~Dglidv~----~~s~~vTvS~~~f~~ 117 (274)
..+-+|.|+++ +.-|..|+|+.+ .+|..... .....++|+.|.+..
T Consensus 112 ---~~g~Gi~Iess-~~tI~Nntf~~~~~~GI~v~g~~~~~~i~~~vI~GN~~~~ 162 (246)
T PF07602_consen 112 ---ARGTGIWIESS-SPTIANNTFTNNGREGIFVTGTSANPGINGNVISGNSIYF 162 (246)
T ss_pred ---CcceEEEEecC-CcEEEeeEEECCccccEEEEeeecCCcccceEeecceEEe
Confidence 24567888777 777788999986 55543322 123456677776554
No 39
>PLN02773 pectinesterase
Probab=93.14 E-value=0.95 Score=43.03 Aligned_cols=82 Identities=15% Similarity=0.257 Sum_probs=54.4
Q ss_pred eEEec-----ceEEc---CCCceEEeecCceE-Eec----------------C------CcEEEeeeceEEEEceEEEec
Q 023995 2 TIRLK-----EELIM---NSFKTIDGRGASVH-IAG----------------G------PCITIQYVTNIIIHGLNIHDC 50 (274)
Q Consensus 2 ~I~L~-----~~L~v---~snkTI~G~G~~~~-i~~----------------G------~~l~i~~~~NVIIrnl~i~~~ 50 (274)
+|.++ +.|.| ++|+||.|.+..-+ |.. | +.+.+ .++|++.+||+|++.
T Consensus 36 ~I~Ik~G~Y~E~V~I~~~k~~itl~G~~~~~TiI~~~~~a~~~~~~~~~~~~g~gT~~SaTv~v-~a~~f~a~nlT~~Nt 114 (317)
T PLN02773 36 VIRVAPGVYRQPVYVPKTKNLITLAGLSPEATVLTWNNTATKIDHHQASRVIGTGTFGCGTVIV-EGEDFIAENITFENS 114 (317)
T ss_pred EEEEeCceEEEEEEECcCCccEEEEeCCCCceEEEccCccccccccccccccCcCccCceEEEE-ECCCeEEEeeEEEeC
Confidence 46666 45677 35789999876432 321 1 12333 689999999999985
Q ss_pred ccCCCccccCCCCCCCCccccCCCeEEee-CCeeEEEeceeccCCCCCeEEe
Q 023995 51 KKGGNAMVRDSPRHFGWRTVSDGDGVSIF-GGTHIWVDHCSLSNCDDGLVDA 101 (274)
Q Consensus 51 ~~~~~~~~~~~~~~~~~~~~~~~DaI~i~-~~~nVWIDHcs~s~~~Dglidv 101 (274)
.+. ..+-|+.+. .+.++-+.+|.|-...|=|++-
T Consensus 115 ~~~-----------------~~gQAvAl~v~gDr~~f~~c~~~G~QDTL~~~ 149 (317)
T PLN02773 115 APE-----------------GSGQAVAIRVTADRCAFYNCRFLGWQDTLYLH 149 (317)
T ss_pred CCC-----------------CCCcEEEEEecCccEEEEccEeecccceeEeC
Confidence 321 134555555 4678999999999888877753
No 40
>PF00544 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pectate lyase 4.2.2.2 from EC is an enzyme involved in the maceration and soft rotting of plant tissue. Pectate lyase is responsible for the eliminative cleavage of pectate, yielding oligosaccharides with 4-deoxy-alpha-D-mann-4-enuronosyl groups at their non-reducing ends. The protein is maximally expressed late in pollen development. It has been suggested that the pollen expression of pectate lyase genes might relate to a requirement for pectin degradation during pollen tube growth []. The structure and the folding kinetics of one member of this family, pectate lyase C (pelC)1 from Erwinia chrysanthemi has been investigated in some detail [,]. PelC contains a parallel beta-helix folding motif. The majority of the regular secondary structure is composed of parallel beta-sheets (about 30%). The individual strands of the sheets are connected by unordered loops of varying length. The backbone is then formed by a large helix composed of beta-sheets. There are two disulphide bonds in pelC and 12 proline residues. One of these prolines, Pro220, is involved in a cis peptide bond. he folding mechanism of pelC involves two slow phases that have been attributed to proline isomerization. Some of the proteins in this family are allergens. Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Amb a 1, Amb a 2, Amb a 3, Cha o 1, Cup a 1, Cry j 1, Jun a 1. Two of the major allergens in the pollen of short ragweed (Ambrosia artemisiifolia) are Amb aI and Amb aII. The primary structure of Amb aII has been deduced and has been shown to share ~65% sequence identity with the Amb alpha I multigene family of allergens []. Members of the Amb aI/aII family include Nicotiana tabacum (Common tobacco) pectate lyase, which is similar to the deduced amino acid sequences of two pollen-specific pectate lyase genes identified in Solanum lycopersicum (Tomato) (Lycopersicon esculentum) []; Cry jI, a major allergenic glycoprotein of Cryptomeria japonica (Japanese cedar) - the most common pollen allergen in Japan []; and P56 and P59, which share sequence similarity with pectate lyases of plant pathogenic bacteria [].; PDB: 1O8M_A 1O8K_A 1O8E_A 1O8H_A 2PEC_A 1PLU_A 1O8I_A 1O8J_A 1O8D_A 1O8F_A ....
Probab=93.09 E-value=2.4 Score=37.40 Aligned_cols=115 Identities=15% Similarity=0.152 Sum_probs=66.7
Q ss_pred CcEEEeeeceEEEEceEEEecccCCCccccCCCCCCCCccccCCC-eEEee-CCeeEEEeceeccCCCCCeEE------e
Q 023995 30 PCITIQYVTNIIIHGLNIHDCKKGGNAMVRDSPRHFGWRTVSDGD-GVSIF-GGTHIWVDHCSLSNCDDGLVD------A 101 (274)
Q Consensus 30 ~~l~i~~~~NVIIrnl~i~~~~~~~~~~~~~~~~~~~~~~~~~~D-aI~i~-~~~nVWIDHcs~s~~~Dglid------v 101 (274)
-.|.+.+++||+|-+..|........ ....| .|.+. ++.+|=|=+|-|......++- .
T Consensus 76 Dai~i~~~~nVWIDH~sfs~~~~~~~--------------~~~~Dg~idi~~~s~~vTiS~n~f~~~~k~~l~G~~d~~~ 141 (200)
T PF00544_consen 76 DAISIDNSSNVWIDHCSFSWGNFECN--------------SDSSDGLIDIKKGSDNVTISNNIFDNHNKTMLIGSSDSNS 141 (200)
T ss_dssp -SEEEESTEEEEEES-EEEETTS-GG--------------GSSSSSSEEEESSTEEEEEES-EEEEEEETCEESSCTTCG
T ss_pred CeEEEEecccEEEeccEEeccccccc--------------cccCCceEEEEeCCceEEEEchhccccccccccCCCCCcc
Confidence 35888899999999999998622100 01133 35554 456666666666653222211 1
Q ss_pred eeCCceEEEEcceecccC-eeeEecCCCcccCCCcceEEEEeeEEcCCCcCCCceeec-cEEEEEccee
Q 023995 102 IHGSTAITISNNFMTHHD-KVMLLGHSDTYTQDKNMQVTIAFNHFGEGLVQRIPRCRH-GYFHVVNNDY 168 (274)
Q Consensus 102 ~~~s~~vTvS~~~f~~h~-k~~l~G~sd~~~~d~~~~vT~hhN~f~~~~~~R~Pr~R~-G~~hv~NN~~ 168 (274)
......||+-+|+|.+.. +.=++.. -++-+..|+| .+..+..=.+|. +++-+-||||
T Consensus 142 ~~~~~~vT~hhN~f~~~~~R~P~~r~---------G~~Hv~NN~~-~~~~~y~i~~~~~a~v~~E~N~F 200 (200)
T PF00544_consen 142 TDRGLRVTFHHNYFANTNSRNPRVRF---------GYVHVYNNYY-YNWSGYAIGARSGAQVLVENNYF 200 (200)
T ss_dssp GGTTEEEEEES-EEEEEEE-TTEECS---------CEEEEES-EE-EEECSESEEEETTEEEEEES-EE
T ss_pred ccCCceEEEEeEEECchhhCCCcccc---------cEEEEEEeee-ECCCCEEEEccCCeEEEEECcCC
Confidence 222369999999997532 2112221 2799999999 577777666664 5888889987
No 41
>PLN02995 Probable pectinesterase/pectinesterase inhibitor
Probab=92.80 E-value=0.91 Score=46.16 Aligned_cols=82 Identities=21% Similarity=0.288 Sum_probs=56.6
Q ss_pred eEEec-----ceEEcC---CCceEEeecCce-EEec------CC------cEEEeeeceEEEEceEEEecccCCCccccC
Q 023995 2 TIRLK-----EELIMN---SFKTIDGRGASV-HIAG------GP------CITIQYVTNIIIHGLNIHDCKKGGNAMVRD 60 (274)
Q Consensus 2 ~I~L~-----~~L~v~---snkTI~G~G~~~-~i~~------G~------~l~i~~~~NVIIrnl~i~~~~~~~~~~~~~ 60 (274)
+|.++ +.|.|. +|+|+.|.|.+- .|++ |. .+.+ .+++++.|||+|++-.+
T Consensus 256 vI~Ik~G~Y~E~V~i~~~k~~i~l~G~g~~~TvIt~~~~~~~~~~T~~SaT~~v-~~~~F~a~nitf~Ntag-------- 326 (539)
T PLN02995 256 VIYVKRGIYQENINVRLNNDDIMLVGDGMRSTIITGGRSVKGGYTTYNSATAGI-EGLHFIAKGITFRNTAG-------- 326 (539)
T ss_pred EEEEeCCEeEEEEEecCCCCcEEEEEcCCCCeEEEeCCccCCCCcccceEEEEE-ECCCeEEEeeEEEeCCC--------
Confidence 46665 345663 699999998754 3442 11 1333 68999999999998431
Q ss_pred CCCCCCCccccCCCeEEee-CCeeEEEeceeccCCCCCeEEe
Q 023995 61 SPRHFGWRTVSDGDGVSIF-GGTHIWVDHCSLSNCDDGLVDA 101 (274)
Q Consensus 61 ~~~~~~~~~~~~~DaI~i~-~~~nVWIDHcs~s~~~Dglidv 101 (274)
...+-|+.++ .+....+.+|.|....|=|.+-
T Consensus 327 ---------~~~~QAVAlrv~~Dr~~f~~c~~~G~QDTLy~~ 359 (539)
T PLN02995 327 ---------PAKGQAVALRSSSDLSIFYKCSIEGYQDTLMVH 359 (539)
T ss_pred ---------CCCCceEEEEEcCCceeEEcceEecccchhccC
Confidence 0235677776 4788999999999988877653
No 42
>PLN02217 probable pectinesterase/pectinesterase inhibitor
Probab=92.65 E-value=2.8 Score=43.76 Aligned_cols=148 Identities=15% Similarity=0.226 Sum_probs=89.1
Q ss_pred eEEec-----ceEEcC---CCceEEeecCceEE-ec------CC------cEEEeeeceEEEEceEEEecccCCCccccC
Q 023995 2 TIRLK-----EELIMN---SFKTIDGRGASVHI-AG------GP------CITIQYVTNIIIHGLNIHDCKKGGNAMVRD 60 (274)
Q Consensus 2 ~I~L~-----~~L~v~---snkTI~G~G~~~~i-~~------G~------~l~i~~~~NVIIrnl~i~~~~~~~~~~~~~ 60 (274)
+|.++ +.|.|. .|+|+.|.|.+-+| ++ |. .+.+ .+++++.|||+|++-...
T Consensus 281 vI~Ik~GvY~E~V~I~~~k~~i~l~Gdg~~~TiIt~~~~~~dg~~T~~SAT~~v-~g~~F~a~nitf~Ntag~------- 352 (670)
T PLN02217 281 VVHIKAGIYKEYVQVNRSMTHLVFIGDGPDKTVISGSKSYKDGITTYKTATVAI-VGDHFIAKNIGFENTAGA------- 352 (670)
T ss_pred EEEEeCCceEEEEEEcCCCCcEEEEecCCCCeEEEcCCccCCCCCccceEEEEE-ECCCeEEEeeEEEeCCCC-------
Confidence 56665 345664 57889999875443 31 11 1333 689999999999984321
Q ss_pred CCCCCCCccccCCCeEEee-CCeeEEEeceeccCCCC-----------------CeEEeeeCCceEEEEcceeccc----
Q 023995 61 SPRHFGWRTVSDGDGVSIF-GGTHIWVDHCSLSNCDD-----------------GLVDAIHGSTAITISNNFMTHH---- 118 (274)
Q Consensus 61 ~~~~~~~~~~~~~DaI~i~-~~~nVWIDHcs~s~~~D-----------------glidv~~~s~~vTvS~~~f~~h---- 118 (274)
.+.-|+.++ .+...-+.+|.|....| |.+|+.-|.-..-+++|.+.--
T Consensus 353 ----------~~~QAVAlrv~~Dra~fy~C~f~G~QDTLy~~~~Rqyy~~C~I~GtVDFIFG~a~avfq~C~I~~r~~~~ 422 (670)
T PLN02217 353 ----------IKHQAVAIRVLSDESIFYNCKFDGYQDTLYAHSHRQFYRDCTISGTIDFLFGDAAAVFQNCTLLVRKPLL 422 (670)
T ss_pred ----------CCCceEEEEecCCcEEEEcceeeeccchhccCCCcEEEEeCEEEEeccEEecCceEEEEccEEEEccCCC
Confidence 234566666 47788889998877544 5667776777788889988632
Q ss_pred -CeeeEecCCCcccCCCcceEEEEeeEEcCCCcCCCc-----ee---e----ccEEEEEcceec
Q 023995 119 -DKVMLLGHSDTYTQDKNMQVTIAFNHFGEGLVQRIP-----RC---R----HGYFHVVNNDYT 169 (274)
Q Consensus 119 -~k~~l~G~sd~~~~d~~~~vT~hhN~f~~~~~~R~P-----r~---R----~G~~hv~NN~~~ 169 (274)
.+..+--++.. ..+...-+.|+++.+. ....-.| ++ | +..+=+.|.++.
T Consensus 423 ~~~~~ITAqgr~-~~~~~tGfvf~~C~i~-~~~~~~~~~~~~~~yLGRPW~~ysrvVf~~t~l~ 484 (670)
T PLN02217 423 NQACPITAHGRK-DPRESTGFVLQGCTIV-GEPDYLAVKETSKAYLGRPWKEYSRTIIMNTFIP 484 (670)
T ss_pred CCceeEecCCCC-CCCCCceEEEEeeEEe-cCccccccccccceeeccCCCCCceEEEEecccC
Confidence 12222211111 1122456999999984 4322111 11 2 456667777764
No 43
>PLN02197 pectinesterase
Probab=92.53 E-value=2.9 Score=43.05 Aligned_cols=81 Identities=16% Similarity=0.252 Sum_probs=53.9
Q ss_pred eEEec-----ceEEcC---CCceEEeecCceEE-ec--------CC------cEEEeeeceEEEEceEEEecccCCCccc
Q 023995 2 TIRLK-----EELIMN---SFKTIDGRGASVHI-AG--------GP------CITIQYVTNIIIHGLNIHDCKKGGNAMV 58 (274)
Q Consensus 2 ~I~L~-----~~L~v~---snkTI~G~G~~~~i-~~--------G~------~l~i~~~~NVIIrnl~i~~~~~~~~~~~ 58 (274)
+|.++ +.|.|. +|+|+.|.|.+-+| ++ |. .+.+ .+++++.|||+|++-...
T Consensus 306 vI~Ik~GvY~E~V~I~~~k~ni~l~G~g~~~TiIt~~~~~~~~~g~~T~~SaT~~v-~~~~F~a~nitf~Ntag~----- 379 (588)
T PLN02197 306 IIHIKAGIYNEQVTIPKKKNNIFMFGDGARKTVISYNRSVKLSPGTTTSLSGTVQV-ESEGFMAKWIGFKNTAGP----- 379 (588)
T ss_pred EEEEeCceEEEEEEccCCCceEEEEEcCCCCeEEEeccccccCCCCcccceeEEEE-ECCcEEEEEeEEEeCCCC-----
Confidence 46666 345664 68899999875433 21 11 2333 689999999999984310
Q ss_pred cCCCCCCCCccccCCCeEEee-CCeeEEEeceeccCCCCCeEE
Q 023995 59 RDSPRHFGWRTVSDGDGVSIF-GGTHIWVDHCSLSNCDDGLVD 100 (274)
Q Consensus 59 ~~~~~~~~~~~~~~~DaI~i~-~~~nVWIDHcs~s~~~Dglid 100 (274)
.+.-|+.++ .+...-+.+|.|....|=|.+
T Consensus 380 ------------~~~QAVAlrv~~D~~~fy~C~f~GyQDTLy~ 410 (588)
T PLN02197 380 ------------MGHQAVAIRVNGDRAVIFNCRFDGYQDTLYV 410 (588)
T ss_pred ------------CCCceEEEEecCCcEEEEEeEEEecCcceEe
Confidence 234566666 478889999999987776553
No 44
>PLN02170 probable pectinesterase/pectinesterase inhibitor
Probab=92.52 E-value=1.2 Score=45.07 Aligned_cols=81 Identities=21% Similarity=0.316 Sum_probs=53.5
Q ss_pred eEEec-----ceEEc---CCCceEEeecCceEE-ec------CC------cEEEeeeceEEEEceEEEecccCCCccccC
Q 023995 2 TIRLK-----EELIM---NSFKTIDGRGASVHI-AG------GP------CITIQYVTNIIIHGLNIHDCKKGGNAMVRD 60 (274)
Q Consensus 2 ~I~L~-----~~L~v---~snkTI~G~G~~~~i-~~------G~------~l~i~~~~NVIIrnl~i~~~~~~~~~~~~~ 60 (274)
+|.++ +.|.| ++|+||+|.|.+-+| ++ |. .+. ..++|++.|||+|++-...
T Consensus 257 vI~Ik~GvY~E~V~I~~~k~nItl~G~g~~~TiIt~~~~~~~g~~T~~SaTv~-v~~~~F~a~nitf~Ntag~------- 328 (529)
T PLN02170 257 VIYLKAGTYHENLNIPTKQKNVMLVGDGKGKTVIVGSRSNRGGWTTYQTATVA-AMGDGFIARDITFVNSAGP------- 328 (529)
T ss_pred EEEEeCCeeEEEEecCCCCceEEEEEcCCCCeEEEeCCcCCCCCccccceEEE-EEcCCeEEEeeEEEecCCC-------
Confidence 46665 34566 379999999875443 32 11 233 3689999999999985311
Q ss_pred CCCCCCCccccCCCeEEee-CCeeEEEeceeccCCCCCeEE
Q 023995 61 SPRHFGWRTVSDGDGVSIF-GGTHIWVDHCSLSNCDDGLVD 100 (274)
Q Consensus 61 ~~~~~~~~~~~~~DaI~i~-~~~nVWIDHcs~s~~~Dglid 100 (274)
...-|+.++ .+...-+.+|.|....|=|.+
T Consensus 329 ----------~~~QAVALrv~gDr~~fy~C~f~GyQDTLy~ 359 (529)
T PLN02170 329 ----------NSEQAVALRVGSDKSVVYRCSVEGYQDSLYT 359 (529)
T ss_pred ----------CCCceEEEEecCCcEEEEeeeEeccCCccee
Confidence 123455555 467788899999887776554
No 45
>PLN02713 Probable pectinesterase/pectinesterase inhibitor
Probab=92.35 E-value=1.2 Score=45.64 Aligned_cols=81 Identities=17% Similarity=0.294 Sum_probs=53.4
Q ss_pred eEEec-----ceEEc---CCCceEEeecCce-EEec------C------CcEEEeeeceEEEEceEEEecccCCCccccC
Q 023995 2 TIRLK-----EELIM---NSFKTIDGRGASV-HIAG------G------PCITIQYVTNIIIHGLNIHDCKKGGNAMVRD 60 (274)
Q Consensus 2 ~I~L~-----~~L~v---~snkTI~G~G~~~-~i~~------G------~~l~i~~~~NVIIrnl~i~~~~~~~~~~~~~ 60 (274)
+|.++ +.|.| ++|+||.|.|.+- .|++ | +.+.+ .+++++.|||+|++-.+.
T Consensus 284 vI~Ik~G~Y~E~V~i~~~k~~i~l~G~g~~~TiIt~~~~~~~g~~T~~SaT~~v-~~~~F~a~nitf~Ntag~------- 355 (566)
T PLN02713 284 VIYVTAGVYEEYVSIPKNKKYLMMIGDGINQTVITGNRSVVDGWTTFNSATFAV-VGQNFVAVNITFRNTAGP------- 355 (566)
T ss_pred EEEEcCcEEEEEEEecCCCceEEEEecCCCCcEEEcCCcccCCCccccceeEEE-ECCCeEEEeeEEEeCCCC-------
Confidence 46665 34566 3688999998643 3331 2 12444 679999999999984311
Q ss_pred CCCCCCCccccCCCeEEee-CCeeEEEeceeccCCCCCeEE
Q 023995 61 SPRHFGWRTVSDGDGVSIF-GGTHIWVDHCSLSNCDDGLVD 100 (274)
Q Consensus 61 ~~~~~~~~~~~~~DaI~i~-~~~nVWIDHcs~s~~~Dglid 100 (274)
...-|+.++ .+...-+.+|.|....|=|.+
T Consensus 356 ----------~~~QAVAlrv~~D~~~fy~C~~~G~QDTLy~ 386 (566)
T PLN02713 356 ----------AKHQAVALRSGADLSTFYSCSFEAYQDTLYT 386 (566)
T ss_pred ----------CCCceEEEEecCCcEEEEeeeeccCCcceEE
Confidence 234566665 467788999999887775553
No 46
>PLN02176 putative pectinesterase
Probab=92.32 E-value=1.9 Score=41.41 Aligned_cols=101 Identities=19% Similarity=0.277 Sum_probs=63.7
Q ss_pred eEEec-----ceEEc---CCCceEEeecCceEEe--c-------CCcEEEeeeceEEEEceEEEecccCCCccccCCCCC
Q 023995 2 TIRLK-----EELIM---NSFKTIDGRGASVHIA--G-------GPCITIQYVTNIIIHGLNIHDCKKGGNAMVRDSPRH 64 (274)
Q Consensus 2 ~I~L~-----~~L~v---~snkTI~G~G~~~~i~--~-------G~~l~i~~~~NVIIrnl~i~~~~~~~~~~~~~~~~~ 64 (274)
+|.++ +.|.| ++|+||.|.|.+-+|. + .+.+.+ .+++++.+||+|++-.+..+ +
T Consensus 70 ~I~Ik~GvY~EkV~Ip~~k~~vtl~G~g~~~TiIt~~~~~~t~~saT~~v-~a~~F~a~nlT~~Nt~~~~~------~-- 140 (340)
T PLN02176 70 RILIQNGIYREKVTIPKEKGYIYMQGKGIEKTIIAYGDHQATDTSATFTS-YASNIIITGITFKNTYNIAS------N-- 140 (340)
T ss_pred EEEECCcEEEEEEEECCCCccEEEEEcCCCceEEEEeCCcccccceEEEE-ECCCEEEEeeEEEeCCCccC------C--
Confidence 45555 45677 3689999998654332 1 123555 68999999999998643110 0
Q ss_pred CCCccccCCCeEEee-CCeeEEEeceeccCCCCCeEEeeeCCceEEEEcceecc
Q 023995 65 FGWRTVSDGDGVSIF-GGTHIWVDHCSLSNCDDGLVDAIHGSTAITISNNFMTH 117 (274)
Q Consensus 65 ~~~~~~~~~DaI~i~-~~~nVWIDHcs~s~~~Dglidv~~~s~~vTvS~~~f~~ 117 (274)
- ...++-|+.+. .+.++-+.+|.|....|=|.+-. ..--..+|++..
T Consensus 141 ~---~~~~~QAVAl~v~gDr~~f~~C~f~G~QDTLy~~~---gRqyf~~CyIeG 188 (340)
T PLN02176 141 S---SRPTKPAVAARMLGDKYAIIDSSFDGFQDTLFDGK---GRHYYKRCVISG 188 (340)
T ss_pred C---CCCccceEEEEecCccEEEEccEEecccceeEeCC---cCEEEEecEEEe
Confidence 0 01234566665 46889999999999888887642 233344666653
No 47
>PLN02990 Probable pectinesterase/pectinesterase inhibitor
Probab=92.24 E-value=3.7 Score=42.10 Aligned_cols=97 Identities=20% Similarity=0.339 Sum_probs=63.1
Q ss_pred eEEec-----ceEEcC---CCceEEeecCce-EEec------C-C------cEEEeeeceEEEEceEEEecccCCCcccc
Q 023995 2 TIRLK-----EELIMN---SFKTIDGRGASV-HIAG------G-P------CITIQYVTNIIIHGLNIHDCKKGGNAMVR 59 (274)
Q Consensus 2 ~I~L~-----~~L~v~---snkTI~G~G~~~-~i~~------G-~------~l~i~~~~NVIIrnl~i~~~~~~~~~~~~ 59 (274)
+|.++ +.|.|. +|+||.|.|.+- .|++ | . .+.+ .+++++.|||+|++-.+.
T Consensus 290 vI~Ik~GvY~E~V~i~~~k~~i~l~G~g~~~TiIt~~~~~~~g~~~T~~saT~~v-~~~~F~a~nitf~Ntag~------ 362 (572)
T PLN02990 290 VIYIKQGVYNEKVDVTKKMTHVTFIGDGPTKTKITGSLNFYIGKVKTYLTATVAI-NGDHFTAKNIGFENTAGP------ 362 (572)
T ss_pred EEEEeCceeEEEEEecCCCCcEEEEecCCCceEEEeccccCCCCccceeeeEEEE-EcCCEEEEeeEEEeCCCC------
Confidence 46665 345663 688999998643 3431 1 1 1233 689999999999984311
Q ss_pred CCCCCCCCccccCCCeEEee-CCeeEEEeceeccCCCC-----------------CeEEeeeCCceEEEEcceec
Q 023995 60 DSPRHFGWRTVSDGDGVSIF-GGTHIWVDHCSLSNCDD-----------------GLVDAIHGSTAITISNNFMT 116 (274)
Q Consensus 60 ~~~~~~~~~~~~~~DaI~i~-~~~nVWIDHcs~s~~~D-----------------glidv~~~s~~vTvS~~~f~ 116 (274)
.+.-|+.++ .+...-+.+|.|....| |.+|+.-|.-..-.++|.|.
T Consensus 363 -----------~~~QAVAlrv~~D~~~f~~c~~~G~QDTLy~~~~Rqyy~~C~I~GtVDFIFG~a~avf~~C~i~ 426 (572)
T PLN02990 363 -----------EGHQAVALRVSADYAVFYNCQIDGYQDTLYVHSHRQFFRDCTVSGTVDFIFGDAKVVLQNCNIV 426 (572)
T ss_pred -----------CCCceEEEEEcCCcEEEEeeeEecccchhccCCCcEEEEeeEEecccceEccCceEEEEccEEE
Confidence 245677776 47788899999987655 44555555555666777764
No 48
>PLN02708 Probable pectinesterase/pectinesterase inhibitor
Probab=92.20 E-value=1.2 Score=45.47 Aligned_cols=81 Identities=17% Similarity=0.307 Sum_probs=53.6
Q ss_pred eEEec-----ceEEc---CCCceEEeecCceEE-ec-------C------CcEEEeeeceEEEEceEEEecccCCCcccc
Q 023995 2 TIRLK-----EELIM---NSFKTIDGRGASVHI-AG-------G------PCITIQYVTNIIIHGLNIHDCKKGGNAMVR 59 (274)
Q Consensus 2 ~I~L~-----~~L~v---~snkTI~G~G~~~~i-~~-------G------~~l~i~~~~NVIIrnl~i~~~~~~~~~~~~ 59 (274)
+|.++ +.|.| +.|+||+|.|.+-+| ++ | +.+.+ .+++++.|||+|++-..
T Consensus 273 vI~vk~GvY~E~V~i~~~k~~v~l~G~g~~~TiIt~~~~~~~~g~~T~~saT~~v-~~~~f~a~~it~~Ntag------- 344 (553)
T PLN02708 273 VIRIKEGVYEETVRVPLEKKNVVFLGDGMGKTVITGSLNVGQPGISTYNTATVGV-LGDGFMARDLTIQNTAG------- 344 (553)
T ss_pred EEEEeCceEEeeeeecCCCccEEEEecCCCceEEEecCccCCCCcCccceEEEEE-EcCCeEEEeeEEEcCCC-------
Confidence 46665 34555 368899999865443 31 1 12333 68999999999997421
Q ss_pred CCCCCCCCccccCCCeEEee-CCeeEEEeceeccCCCCCeEE
Q 023995 60 DSPRHFGWRTVSDGDGVSIF-GGTHIWVDHCSLSNCDDGLVD 100 (274)
Q Consensus 60 ~~~~~~~~~~~~~~DaI~i~-~~~nVWIDHcs~s~~~Dglid 100 (274)
....-|+.++ .+..+-+.+|.|....|=|..
T Consensus 345 ----------~~~~QAVAlrv~~D~~~f~~c~~~G~QDTLy~ 376 (553)
T PLN02708 345 ----------PDAHQAVAFRSDSDLSVIENCEFLGNQDTLYA 376 (553)
T ss_pred ----------CCCCceEEEEecCCcEEEEeeeeeecccccee
Confidence 0234677776 478899999999987665443
No 49
>PLN02201 probable pectinesterase/pectinesterase inhibitor
Probab=92.01 E-value=1.4 Score=44.63 Aligned_cols=82 Identities=16% Similarity=0.229 Sum_probs=55.0
Q ss_pred eEEec-----ceEEcC---CCceEEeecCce-EEec------CC------cEEEeeeceEEEEceEEEecccCCCccccC
Q 023995 2 TIRLK-----EELIMN---SFKTIDGRGASV-HIAG------GP------CITIQYVTNIIIHGLNIHDCKKGGNAMVRD 60 (274)
Q Consensus 2 ~I~L~-----~~L~v~---snkTI~G~G~~~-~i~~------G~------~l~i~~~~NVIIrnl~i~~~~~~~~~~~~~ 60 (274)
+|.++ +.|.|. +|+||.|.|.+- .|++ |. .+.+ .+++++.+||+|++-.+.
T Consensus 237 vI~Ik~GvY~E~V~I~~~k~~i~l~G~g~~~TiIt~~~~~~~g~~T~~SAT~~v-~~~~F~a~nitf~Ntag~------- 308 (520)
T PLN02201 237 VIYIKKGVYLENVEIKKKKWNIMMVGDGIDATVITGNRSFIDGWTTFRSATFAV-SGRGFIARDITFQNTAGP------- 308 (520)
T ss_pred EEEEeCceeEEEEEecCCCceEEEEecCCCCcEEEeCCccCCCCcccceEEEEE-ECCCeEEEeeEEEECCCC-------
Confidence 46665 455663 688999998653 3331 21 2333 689999999999985321
Q ss_pred CCCCCCCccccCCCeEEee-CCeeEEEeceeccCCCCCeEEe
Q 023995 61 SPRHFGWRTVSDGDGVSIF-GGTHIWVDHCSLSNCDDGLVDA 101 (274)
Q Consensus 61 ~~~~~~~~~~~~~DaI~i~-~~~nVWIDHcs~s~~~Dglidv 101 (274)
...-|+.++ .+...-+.+|.|....|=|.+-
T Consensus 309 ----------~~~QAVAlrv~~D~~~fy~C~f~G~QDTLy~~ 340 (520)
T PLN02201 309 ----------EKHQAVALRSDSDLSVFYRCAMRGYQDTLYTH 340 (520)
T ss_pred ----------CCCceEEEEEcCCcEEEEeeeeeccCCeeEeC
Confidence 234566665 4678899999999888877653
No 50
>PLN02484 probable pectinesterase/pectinesterase inhibitor
Probab=91.92 E-value=3.5 Score=42.40 Aligned_cols=97 Identities=23% Similarity=0.343 Sum_probs=62.4
Q ss_pred eEEecc----e--EEcC---CCceEEeecCceE-EecCC------------cEEEeeeceEEEEceEEEecccCCCcccc
Q 023995 2 TIRLKE----E--LIMN---SFKTIDGRGASVH-IAGGP------------CITIQYVTNIIIHGLNIHDCKKGGNAMVR 59 (274)
Q Consensus 2 ~I~L~~----~--L~v~---snkTI~G~G~~~~-i~~G~------------~l~i~~~~NVIIrnl~i~~~~~~~~~~~~ 59 (274)
+|.++. | |.|. +|+||.|.|.+-+ |+++. .+. ..+++++.|||+|++-.+.
T Consensus 303 vI~Ik~G~Y~E~~v~i~~~k~ni~l~G~g~~~TiIt~~~~~~~~~~t~~saT~~-v~~~~F~a~~itf~Ntag~------ 375 (587)
T PLN02484 303 IIYVKAGRYEENNLKVGRKKTNLMFIGDGKGKTVITGGKSIFDNLTTFHTASFA-ATGAGFIARDMTFENWAGP------ 375 (587)
T ss_pred EEEEeCCEEEEEEEEECCCCceEEEEecCCCCeEEecCCcccCCCcccceEEEE-EEcCCEEEEeeEEEECCCC------
Confidence 566662 3 6674 6889999987543 44211 122 3689999999999984321
Q ss_pred CCCCCCCCccccCCCeEEee-CCeeEEEeceeccCCCCC-----------------eEEeeeCCceEEEEcceec
Q 023995 60 DSPRHFGWRTVSDGDGVSIF-GGTHIWVDHCSLSNCDDG-----------------LVDAIHGSTAITISNNFMT 116 (274)
Q Consensus 60 ~~~~~~~~~~~~~~DaI~i~-~~~nVWIDHcs~s~~~Dg-----------------lidv~~~s~~vTvS~~~f~ 116 (274)
...-|+.++ .+.+.-+.+|.|....|= .+|+.-|.-..-.++|.|.
T Consensus 376 -----------~~~QAvAlrv~~D~~~fy~C~~~G~QDTLy~~~~Rqyy~~C~I~GtVDFIFG~a~avfq~C~i~ 439 (587)
T PLN02484 376 -----------AKHQAVALRVGADHAVVYRCNIIGYQDTLYVHSNRQFFRECDIYGTVDFIFGNAAVVLQNCSIY 439 (587)
T ss_pred -----------CCCceEEEEecCCcEEEEeeeEeccCcccccCCCcEEEEecEEEeccceecccceeEEeccEEE
Confidence 234566665 467888899998876664 4455545555566666664
No 51
>PLN02933 Probable pectinesterase/pectinesterase inhibitor
Probab=91.84 E-value=1.5 Score=44.41 Aligned_cols=81 Identities=17% Similarity=0.274 Sum_probs=54.4
Q ss_pred eEEec-----ceEEcC---CCceEEeecCce-EEec------C------CcEEEeeeceEEEEceEEEecccCCCccccC
Q 023995 2 TIRLK-----EELIMN---SFKTIDGRGASV-HIAG------G------PCITIQYVTNIIIHGLNIHDCKKGGNAMVRD 60 (274)
Q Consensus 2 ~I~L~-----~~L~v~---snkTI~G~G~~~-~i~~------G------~~l~i~~~~NVIIrnl~i~~~~~~~~~~~~~ 60 (274)
+|.++ +.|.|. +|+||.|.|.+- .|.+ | +.+.+ .+++++.|||+|++-.+.
T Consensus 249 vI~Ik~GvY~E~V~I~~~k~~itl~G~g~~~TiIt~~~~~~dg~~T~~SaT~~v-~a~~F~a~nitf~Ntag~------- 320 (530)
T PLN02933 249 IIYIKGGEYFENVELPKKKTMIMFIGDGIGKTVIKANRSRIDGWSTFQTATVGV-KGKGFIAKDISFVNYAGP------- 320 (530)
T ss_pred EEEEcCceEEEEEEecCCCceEEEEEcCCCCcEEEeCCccCCCCccccceEEEE-ECCCEEEEeeEEEECCCC-------
Confidence 46665 355663 678999998653 3331 1 12333 689999999999984311
Q ss_pred CCCCCCCccccCCCeEEee-CCeeEEEeceeccCCCCCeEE
Q 023995 61 SPRHFGWRTVSDGDGVSIF-GGTHIWVDHCSLSNCDDGLVD 100 (274)
Q Consensus 61 ~~~~~~~~~~~~~DaI~i~-~~~nVWIDHcs~s~~~Dglid 100 (274)
...-|+.++ .+...-+.+|.|....|=|++
T Consensus 321 ----------~~~QAVAlrv~~Dra~fy~C~f~G~QDTLy~ 351 (530)
T PLN02933 321 ----------AKHQAVALRSGSDHSAFYRCEFDGYQDTLYV 351 (530)
T ss_pred ----------CCCceEEEEEcCCcEEEEEeEEEeccccccc
Confidence 234666666 478889999999987776654
No 52
>PLN02304 probable pectinesterase
Probab=91.80 E-value=1.8 Score=42.15 Aligned_cols=118 Identities=17% Similarity=0.293 Sum_probs=74.3
Q ss_pred eEEec-----ceEEc---CCCceEEeecCceEE-ec--------C----CcEEEeeeceEEEEceEEEecccCCCccccC
Q 023995 2 TIRLK-----EELIM---NSFKTIDGRGASVHI-AG--------G----PCITIQYVTNIIIHGLNIHDCKKGGNAMVRD 60 (274)
Q Consensus 2 ~I~L~-----~~L~v---~snkTI~G~G~~~~i-~~--------G----~~l~i~~~~NVIIrnl~i~~~~~~~~~~~~~ 60 (274)
+|.++ +.|.| ++|+||.|.|..-++ .. | +.+.+ .+++++.+||+|++-.+..
T Consensus 106 vI~Ik~GvY~EkV~Ip~~K~~Itl~G~g~~~TiIt~~~~a~~~~gT~~SaTv~v-~a~~F~a~nITf~Nta~~~------ 178 (379)
T PLN02304 106 VIWINSGIYYEKVTVPKTKPNITFQGQGFDSTAIAWNDTAKSANGTFYSASVQV-FASNFIAKNISFMNVAPIP------ 178 (379)
T ss_pred EEEEeCeEeEEEEEECCCCCcEEEEecCCCCcEEEccCcccCCCCccceEEEEE-ECCCeEEEeeEEEecCCCC------
Confidence 46665 46677 479999999865333 31 0 12333 6899999999999854311
Q ss_pred CCCCCCCccccCCCeEEee-CCeeEEEeceeccCCCCCeEEeeeCCceEEEEcceecccCeeeEecCCCcccCCCcceEE
Q 023995 61 SPRHFGWRTVSDGDGVSIF-GGTHIWVDHCSLSNCDDGLVDAIHGSTAITISNNFMTHHDKVMLLGHSDTYTQDKNMQVT 139 (274)
Q Consensus 61 ~~~~~~~~~~~~~DaI~i~-~~~nVWIDHcs~s~~~Dglidv~~~s~~vTvS~~~f~~h~k~~l~G~sd~~~~d~~~~vT 139 (274)
.+ + ..+.-|+.+. .+..+-+.+|.|....|=|.+-. + .--..+|++...-- .++|.. ++-
T Consensus 179 ~~---g---~~~~QAVAL~v~gDra~fy~C~f~G~QDTLy~~~-g--R~Yf~~CyIeG~VD-FIFG~g---------~A~ 239 (379)
T PLN02304 179 KP---G---DVGAQAVAIRIAGDQAAFWGCGFFGAQDTLHDDR-G--RHYFKDCYIQGSID-FIFGDA---------RSL 239 (379)
T ss_pred CC---C---CCCccEEEEEecCCcEEEEeceEecccceeEeCC-C--CEEEEeeEEccccc-EEeccc---------eEE
Confidence 00 0 1244567766 47889999999999999998643 2 33345777764311 245654 555
Q ss_pred EEeeEE
Q 023995 140 IAFNHF 145 (274)
Q Consensus 140 ~hhN~f 145 (274)
|.++.+
T Consensus 240 Fe~C~I 245 (379)
T PLN02304 240 YENCRL 245 (379)
T ss_pred EEccEE
Confidence 666655
No 53
>PLN02745 Putative pectinesterase/pectinesterase inhibitor
Probab=91.60 E-value=1.6 Score=44.94 Aligned_cols=81 Identities=17% Similarity=0.266 Sum_probs=53.8
Q ss_pred eEEec-----ceEEcC---CCceEEeecCceEE-ec------CC------cEEEeeeceEEEEceEEEecccCCCccccC
Q 023995 2 TIRLK-----EELIMN---SFKTIDGRGASVHI-AG------GP------CITIQYVTNIIIHGLNIHDCKKGGNAMVRD 60 (274)
Q Consensus 2 ~I~L~-----~~L~v~---snkTI~G~G~~~~i-~~------G~------~l~i~~~~NVIIrnl~i~~~~~~~~~~~~~ 60 (274)
+|.++ +.|.|. +|+||.|.|.+-+| ++ |. .+.+ .+++++.|||+|++-.+.
T Consensus 316 vI~Ik~GvY~E~V~I~~~k~~i~l~G~g~~~TiIt~~~~~~~g~~T~~saT~~v-~~~~F~a~nitf~Ntag~------- 387 (596)
T PLN02745 316 VIYVKQGIYDETVTVDKKMVNVTMYGDGSQKTIVTGNKNFADGVRTFRTATFVA-LGEGFMAKSMGFRNTAGP------- 387 (596)
T ss_pred EEEEeCCeeEEEEEEcCCCceEEEEecCCCceEEEECCcccCCCcceeeEEEEE-EcCCEEEEeeEEEECCCC-------
Confidence 46665 345663 58899999875433 32 11 1333 689999999999984311
Q ss_pred CCCCCCCccccCCCeEEee-CCeeEEEeceeccCCCCCeEE
Q 023995 61 SPRHFGWRTVSDGDGVSIF-GGTHIWVDHCSLSNCDDGLVD 100 (274)
Q Consensus 61 ~~~~~~~~~~~~~DaI~i~-~~~nVWIDHcs~s~~~Dglid 100 (274)
...-|+.++ .+...-+.+|.|....|=|.+
T Consensus 388 ----------~~~QAVAl~v~~Dr~~f~~c~~~G~QDTLy~ 418 (596)
T PLN02745 388 ----------EKHQAVAIRVQSDRSIFLNCRFEGYQDTLYA 418 (596)
T ss_pred ----------CCCceEEEEEcCCcEEEEeeEEeeccccccc
Confidence 234566665 477889999999987776554
No 54
>PLN02634 probable pectinesterase
Probab=91.44 E-value=2.5 Score=40.89 Aligned_cols=100 Identities=17% Similarity=0.348 Sum_probs=62.4
Q ss_pred eEEec-----ceEEc---CCCceEEeecCceEEe-c----------C--------CcEEEeeeceEEEEceEEEecccCC
Q 023995 2 TIRLK-----EELIM---NSFKTIDGRGASVHIA-G----------G--------PCITIQYVTNIIIHGLNIHDCKKGG 54 (274)
Q Consensus 2 ~I~L~-----~~L~v---~snkTI~G~G~~~~i~-~----------G--------~~l~i~~~~NVIIrnl~i~~~~~~~ 54 (274)
+|.++ +.|.| ++|+||.|.|...+|. . | +.+.+ .+++++.+||+|++-.+..
T Consensus 87 vI~Ik~GvY~EkV~Ip~~k~~ItL~G~g~~~TiIt~~~~a~~~~~~g~~~~T~~SaTv~V-~a~~F~a~niTf~Nta~~~ 165 (359)
T PLN02634 87 TIKINAGFYREKVVVPATKPYITFQGAGRDVTAIEWHDRASDRGANGQQLRTYQTASVTV-YANYFTARNISFKNTAPAP 165 (359)
T ss_pred EEEEeCceEEEEEEEcCCCCeEEEEecCCCceEEEecccccccCCCCcccccccceEEEE-ECCCeEEEeCeEEeCCccC
Confidence 46665 45666 4789999998754442 0 1 12333 6899999999999864311
Q ss_pred CccccCCCCCCCCccccCCCeEEee-CCeeEEEeceeccCCCCCeEEeeeCCceEEEEcceecc
Q 023995 55 NAMVRDSPRHFGWRTVSDGDGVSIF-GGTHIWVDHCSLSNCDDGLVDAIHGSTAITISNNFMTH 117 (274)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~DaI~i~-~~~nVWIDHcs~s~~~Dglidv~~~s~~vTvS~~~f~~ 117 (274)
..+ ..++-|+.+. .+.+.-+..|.|....|=|.+-. ..--..+|++..
T Consensus 166 ---------~~g---~~~~QAVAl~v~gDra~f~~C~f~G~QDTL~~~~---gR~yf~~CyIeG 214 (359)
T PLN02634 166 ---------MPG---MQGWQAVAFRISGDKAFFFGCGFYGAQDTLCDDA---GRHYFKECYIEG 214 (359)
T ss_pred ---------CCC---CCCCceEEEEecCCcEEEEEeEEecccceeeeCC---CCEEEEeeEEcc
Confidence 001 1244566665 46779999999999888877532 233334555553
No 55
>PLN02506 putative pectinesterase/pectinesterase inhibitor
Probab=91.38 E-value=1.8 Score=43.96 Aligned_cols=82 Identities=17% Similarity=0.254 Sum_probs=54.7
Q ss_pred eEEec-----ceEEcC---CCceEEeecCceEE-ec------CC------cEEEeeeceEEEEceEEEecccCCCccccC
Q 023995 2 TIRLK-----EELIMN---SFKTIDGRGASVHI-AG------GP------CITIQYVTNIIIHGLNIHDCKKGGNAMVRD 60 (274)
Q Consensus 2 ~I~L~-----~~L~v~---snkTI~G~G~~~~i-~~------G~------~l~i~~~~NVIIrnl~i~~~~~~~~~~~~~ 60 (274)
+|.++ +.|.|. +|+||.|.|.+-+| ++ |. .+. ..+++++.|||.|++-...
T Consensus 263 vI~Vk~GvY~E~V~I~~~k~~i~l~G~g~~~tiIt~~~~~~~g~~T~~saT~~-v~~~~F~a~nit~~Ntag~------- 334 (537)
T PLN02506 263 IIYVKKGVYKENIDMKKKKTNIMLVGDGIGQTVVTGNRNFMQGWTTFRTATVA-VSGRGFIARDITFRNTAGP------- 334 (537)
T ss_pred EEEEeCCeeeEEEeccCCCceEEEEEcCCCCeEEEeCccccCCCCcccceEEE-EEcCCeEEEeeEEEeCCCC-------
Confidence 46665 345663 78899999865433 31 11 123 3689999999999984311
Q ss_pred CCCCCCCccccCCCeEEee-CCeeEEEeceeccCCCCCeEEe
Q 023995 61 SPRHFGWRTVSDGDGVSIF-GGTHIWVDHCSLSNCDDGLVDA 101 (274)
Q Consensus 61 ~~~~~~~~~~~~~DaI~i~-~~~nVWIDHcs~s~~~Dglidv 101 (274)
.+.-|+.++ .+.++-+.+|.|....|=|.+-
T Consensus 335 ----------~~~QAVAl~v~~D~~~fy~C~~~G~QDTLy~~ 366 (537)
T PLN02506 335 ----------QNHQAVALRVDSDQSAFYRCSMEGYQDTLYAH 366 (537)
T ss_pred ----------CCCceEEEEecCCcEEEEcceeecccccceec
Confidence 234556665 4788999999999888777653
No 56
>PLN02314 pectinesterase
Probab=91.37 E-value=3.7 Score=42.21 Aligned_cols=97 Identities=21% Similarity=0.323 Sum_probs=62.6
Q ss_pred eEEec-----ceEEcC---CCceEEeecCceEE-ec------CC------cEEEeeeceEEEEceEEEecccCCCccccC
Q 023995 2 TIRLK-----EELIMN---SFKTIDGRGASVHI-AG------GP------CITIQYVTNIIIHGLNIHDCKKGGNAMVRD 60 (274)
Q Consensus 2 ~I~L~-----~~L~v~---snkTI~G~G~~~~i-~~------G~------~l~i~~~~NVIIrnl~i~~~~~~~~~~~~~ 60 (274)
+|.++ +.|.|. .|+|+.|.|.+-+| ++ |. .+.+ .+++++.|||+|++-.+.
T Consensus 309 vI~ik~G~Y~E~V~i~~~k~~i~l~G~g~~~tiIt~~~~~~~g~~t~~saT~~v-~~~~F~a~~itf~Ntag~------- 380 (586)
T PLN02314 309 VIYVKEGTYVENVLLDKSKWNVMIYGDGKDKTIISGSLNFVDGTPTFSTATFAA-AGKGFIAKDMGFINTAGA------- 380 (586)
T ss_pred EEEEcCceEEEEEEecCCCceEEEEecCCCCcEEEecCCcCCCCCccceEEEEE-EcCCeEEEeeEEEECCCC-------
Confidence 56666 345563 68899999865433 31 11 1333 689999999999985311
Q ss_pred CCCCCCCccccCCCeEEee-CCeeEEEeceeccCCCCC-----------------eEEeeeCCceEEEEcceec
Q 023995 61 SPRHFGWRTVSDGDGVSIF-GGTHIWVDHCSLSNCDDG-----------------LVDAIHGSTAITISNNFMT 116 (274)
Q Consensus 61 ~~~~~~~~~~~~~DaI~i~-~~~nVWIDHcs~s~~~Dg-----------------lidv~~~s~~vTvS~~~f~ 116 (274)
...-|+.++ ++...-+.+|.|....|= .+|+.-|.-..-+++|.|.
T Consensus 381 ----------~~~QAvAlrv~~D~~~f~~c~~~G~QDTLy~~~~rq~y~~C~I~GtvDFIFG~a~avf~~c~i~ 444 (586)
T PLN02314 381 ----------AKHQAVAFRSGSDMSVFYQCSFDAFQDTLYAHSNRQFYRDCDITGTIDFIFGNAAVVFQNCNIQ 444 (586)
T ss_pred ----------CCCceEEEEecCCcEEEEeeEEEeccchheeCCCCEEEEeeEEEeccceeccCceeeeeccEEE
Confidence 234566666 567888999999886664 4455555555666667664
No 57
>PLN02916 pectinesterase family protein
Probab=91.24 E-value=1.8 Score=43.61 Aligned_cols=82 Identities=15% Similarity=0.198 Sum_probs=54.0
Q ss_pred eEEec-----ceEEcC---CCceEEeecCceE-Eec------CC------cEEEeeeceEEEEceEEEecccCCCccccC
Q 023995 2 TIRLK-----EELIMN---SFKTIDGRGASVH-IAG------GP------CITIQYVTNIIIHGLNIHDCKKGGNAMVRD 60 (274)
Q Consensus 2 ~I~L~-----~~L~v~---snkTI~G~G~~~~-i~~------G~------~l~i~~~~NVIIrnl~i~~~~~~~~~~~~~ 60 (274)
+|.++ +.+.|. +|+||.|.|.+-+ |++ |. .+.+ .+++++.|||+|++-.+.
T Consensus 221 vI~Ik~GvY~E~V~I~~~k~~i~l~G~g~~~TiIt~~~~~~~g~~T~~SAT~~v-~~~~F~A~nitf~Ntag~------- 292 (502)
T PLN02916 221 IIYVKAGVYNEKVEIDRHMKNVMFVGDGMDKTIITNNRNVPDGSTTYSSATFGV-SGDGFWARDITFENTAGP------- 292 (502)
T ss_pred EEEEeCceeeEEEEecCCCceEEEEecCCCCcEEEeCCccCCCCcceeeEEEEE-ECCCEEEEeeEEEeCCCC-------
Confidence 46665 455663 5889999986543 331 11 2333 689999999999984321
Q ss_pred CCCCCCCccccCCCeEEee-CCeeEEEeceeccCCCCCeEEe
Q 023995 61 SPRHFGWRTVSDGDGVSIF-GGTHIWVDHCSLSNCDDGLVDA 101 (274)
Q Consensus 61 ~~~~~~~~~~~~~DaI~i~-~~~nVWIDHcs~s~~~Dglidv 101 (274)
...-|+.++ .+...-+.+|.|....|=|.+-
T Consensus 293 ----------~~~QAVALrv~~D~a~fy~C~f~G~QDTLy~~ 324 (502)
T PLN02916 293 ----------HKHQAVALRVSSDLSVFYRCSFKGYQDTLFVH 324 (502)
T ss_pred ----------CCCceEEEEEcCCcEEEEeeeEeccCceeEeC
Confidence 234555555 4678889999999887766654
No 58
>PLN02313 Pectinesterase/pectinesterase inhibitor
Probab=90.90 E-value=4.3 Score=41.79 Aligned_cols=125 Identities=18% Similarity=0.292 Sum_probs=74.9
Q ss_pred eEEec-----ceEEcC---CCceEEeecCceEE-ec------C------CcEEEeeeceEEEEceEEEecccCCCccccC
Q 023995 2 TIRLK-----EELIMN---SFKTIDGRGASVHI-AG------G------PCITIQYVTNIIIHGLNIHDCKKGGNAMVRD 60 (274)
Q Consensus 2 ~I~L~-----~~L~v~---snkTI~G~G~~~~i-~~------G------~~l~i~~~~NVIIrnl~i~~~~~~~~~~~~~ 60 (274)
+|.++ +.+.|. .|+||+|.|.+-+| ++ | +.+.+ .+++++.|||.|++-...
T Consensus 306 vI~ik~GvY~E~V~i~~~k~ni~l~Gdg~~~TiIt~~~~~~~g~~t~~sat~~v-~~~~F~a~~itf~Ntag~------- 377 (587)
T PLN02313 306 VIHIKAGVYRENVEVTKKKKNIMFLGDGRGKTIITGSRNVVDGSTTFHSATVAA-VGERFLARDITFQNTAGP------- 377 (587)
T ss_pred EEEEeCceeEEEEEeCCCCCeEEEEecCCCccEEEeCCcccCCCCceeeEEEEE-ECCCeEEEeeEEEeCCCC-------
Confidence 46665 345663 68899999875433 32 2 12333 579999999999985311
Q ss_pred CCCCCCCccccCCCeEEee-CCeeEEEeceeccCCCC-----------------CeEEeeeCCceEEEEcceeccc----
Q 023995 61 SPRHFGWRTVSDGDGVSIF-GGTHIWVDHCSLSNCDD-----------------GLVDAIHGSTAITISNNFMTHH---- 118 (274)
Q Consensus 61 ~~~~~~~~~~~~~DaI~i~-~~~nVWIDHcs~s~~~D-----------------glidv~~~s~~vTvS~~~f~~h---- 118 (274)
...-|+.++ ++...-+-+|.|....| |.+|+.-|.-.+-.++|.+.--
T Consensus 378 ----------~~~QAvAlrv~~D~~~fy~C~~~g~QDTLy~~~~rq~y~~c~I~GtvDFIFG~a~avfq~c~i~~r~~~~ 447 (587)
T PLN02313 378 ----------SKHQAVALRVGSDFSAFYQCDMFAYQDTLYVHSNRQFFVKCHITGTVDFIFGNAAAVLQDCDINARRPNS 447 (587)
T ss_pred ----------CCCceEEEEecCCcEEEEeeeEecccchhccCCCcEEEEeeEEeeccceeccceeEEEEccEEEEecCCC
Confidence 234566665 46788899999887544 5666666666777888887621
Q ss_pred -CeeeEecCCCcccCCCcceEEEEeeEE
Q 023995 119 -DKVMLLGHSDTYTQDKNMQVTIAFNHF 145 (274)
Q Consensus 119 -~k~~l~G~sd~~~~d~~~~vT~hhN~f 145 (274)
.+.++.-.+... .+...-+.||++.+
T Consensus 448 ~~~~~iTAqgr~~-~~~~tG~v~~~c~i 474 (587)
T PLN02313 448 GQKNMVTAQGRSD-PNQNTGIVIQNCRI 474 (587)
T ss_pred CCcceEEecCCCC-CCCCceEEEEecEE
Confidence 122222211111 11233577888877
No 59
>PLN02665 pectinesterase family protein
Probab=90.82 E-value=17 Score=35.38 Aligned_cols=87 Identities=14% Similarity=0.260 Sum_probs=55.0
Q ss_pred eEEec-----ceEEc---CCCceEEeecCce-EEecC-----------CcEEEeeeceEEEEceEEEecccCCCccccCC
Q 023995 2 TIRLK-----EELIM---NSFKTIDGRGASV-HIAGG-----------PCITIQYVTNIIIHGLNIHDCKKGGNAMVRDS 61 (274)
Q Consensus 2 ~I~L~-----~~L~v---~snkTI~G~G~~~-~i~~G-----------~~l~i~~~~NVIIrnl~i~~~~~~~~~~~~~~ 61 (274)
+|.++ +.|.| ++++|+.|.|..- .|..+ +.+.+ .+++++.+||+|++-.+...+
T Consensus 99 vI~Ik~GvY~EkV~Ip~~kp~Itl~G~~~~~tiIt~~~~a~~~gT~~SaTv~v-~a~~F~a~nitf~Nta~~~~~----- 172 (366)
T PLN02665 99 IIDIGPGEYNEKITIDRSKPFVTLYGSPGAMPTLTFDGTAAKYGTVYSATLIV-ESDYFMAANIIIKNSAPRPDG----- 172 (366)
T ss_pred EEEEeCcEEEEEEEecCCCCEEEEEecCCCCCEEEECCccCCCCCcceEEEEE-ECCCeEEEeeEEEeCCCCcCC-----
Confidence 45555 45666 3678999997643 33311 12444 689999999999985432100
Q ss_pred CCCCCCccccCCCeEEee-CCeeEEEeceeccCCCCCeEEe
Q 023995 62 PRHFGWRTVSDGDGVSIF-GGTHIWVDHCSLSNCDDGLVDA 101 (274)
Q Consensus 62 ~~~~~~~~~~~~DaI~i~-~~~nVWIDHcs~s~~~Dglidv 101 (274)
...+.-|+.++ .+.+.-+.+|.|....|=|.+-
T Consensus 173 -------~~~g~QAVAl~v~gDka~f~~C~f~G~QDTL~~~ 206 (366)
T PLN02665 173 -------KRKGAQAVAMRISGDKAAFYNCRFIGFQDTLCDD 206 (366)
T ss_pred -------CCCCcceEEEEEcCCcEEEEcceeccccceeEeC
Confidence 01223455554 3678899999999887776653
No 60
>PF14592 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OFL_A 1DBO_A 1DBG_A.
Probab=90.59 E-value=0.69 Score=45.59 Aligned_cols=60 Identities=20% Similarity=0.117 Sum_probs=26.7
Q ss_pred eEEEEeeEEcCCCcCC--Cceee-ccEEE-EEcceecCccc----------eEEeeC------CCceEEeeccEEeCCCC
Q 023995 137 QVTIAFNHFGEGLVQR--IPRCR-HGYFH-VVNNDYTHWEM----------YAIGGS------ANPTINSQGNRFAAPDR 196 (274)
Q Consensus 137 ~vT~hhN~f~~~~~~R--~Pr~R-~G~~h-v~NN~~~~~~~----------yaig~~------~~~~i~~e~N~F~~~~~ 196 (274)
+-|+..|+|. +...+ .+=+| +|.-| ++|||+++-.. ++.-.+ .-..+++++|-|.+...
T Consensus 246 ~n~V~gN~Fi-Gng~~~~tGGIRIi~~~H~I~nNY~~gl~g~~~~~~~~v~ng~p~s~ln~y~qv~nv~I~~NT~In~~~ 324 (425)
T PF14592_consen 246 RNTVEGNVFI-GNGVKEGTGGIRIIGEGHTIYNNYFEGLTGTRFRGALAVMNGVPNSPLNRYDQVKNVLIANNTFINCKS 324 (425)
T ss_dssp S-EEES-EEE-E-SSSS-B--EEE-SBS-EEES-EEEESSB-TTTTSEE-EEE--BSTTSTT---BSEEEES-EEES-SE
T ss_pred CceEeccEEe-cCCCcCCCCceEEecCCcEEEcceeeccccceeecceeeccCCCCCCcccccccceeEEecceEEccCC
Confidence 5778888884 44432 45666 46555 56888875422 111111 11235778888887664
Q ss_pred C
Q 023995 197 A 197 (274)
Q Consensus 197 ~ 197 (274)
+
T Consensus 325 ~ 325 (425)
T PF14592_consen 325 P 325 (425)
T ss_dssp E
T ss_pred c
Confidence 3
No 61
>PLN02468 putative pectinesterase/pectinesterase inhibitor
Probab=90.25 E-value=2.2 Score=43.60 Aligned_cols=81 Identities=16% Similarity=0.294 Sum_probs=52.7
Q ss_pred eEEec-----ceEEcC---CCceEEeecCceEE-ec------CC------cEEEeeeceEEEEceEEEecccCCCccccC
Q 023995 2 TIRLK-----EELIMN---SFKTIDGRGASVHI-AG------GP------CITIQYVTNIIIHGLNIHDCKKGGNAMVRD 60 (274)
Q Consensus 2 ~I~L~-----~~L~v~---snkTI~G~G~~~~i-~~------G~------~l~i~~~~NVIIrnl~i~~~~~~~~~~~~~ 60 (274)
+|.++ +.|.|. .|+||.|.|..-+| ++ |. .+.+ .+++++.|||.|++-...
T Consensus 289 vI~ik~GvY~E~V~i~~~k~~i~~~G~g~~~tiIt~~~~~~dg~~t~~saT~~v-~~~~f~a~~itf~Ntag~------- 360 (565)
T PLN02468 289 IIYVKKGVYFENVRVEKKKWNVVMVGDGMSKTIVSGSLNFVDGTPTFSTATFAV-FGKGFMARDMGFRNTAGP------- 360 (565)
T ss_pred EEEEeCCceEEEEEecCCCCeEEEEecCCCCCEEEeCCccCCCCCccceeeeeE-ECCCeEEEEEEEEeCCCC-------
Confidence 45555 345663 57899999875433 31 11 2333 579999999999974311
Q ss_pred CCCCCCCccccCCCeEEee-CCeeEEEeceeccCCCCCeEE
Q 023995 61 SPRHFGWRTVSDGDGVSIF-GGTHIWVDHCSLSNCDDGLVD 100 (274)
Q Consensus 61 ~~~~~~~~~~~~~DaI~i~-~~~nVWIDHcs~s~~~Dglid 100 (274)
.+.-|+.++ .+...-+.+|.|....|=|.+
T Consensus 361 ----------~~~QAVAl~v~~D~~~fy~c~~~G~QDTLy~ 391 (565)
T PLN02468 361 ----------IKHQAVALMSSADLSVFYRCTMDAFQDTLYA 391 (565)
T ss_pred ----------CCCceEEEEEcCCcEEEEEeEEEeccchhcc
Confidence 234566665 577889999999887665543
No 62
>PLN02301 pectinesterase/pectinesterase inhibitor
Probab=90.07 E-value=2.1 Score=43.61 Aligned_cols=81 Identities=16% Similarity=0.299 Sum_probs=53.1
Q ss_pred eEEec-----ceEEcC---CCceEEeecCceEE-ec------CC------cEEEeeeceEEEEceEEEecccCCCccccC
Q 023995 2 TIRLK-----EELIMN---SFKTIDGRGASVHI-AG------GP------CITIQYVTNIIIHGLNIHDCKKGGNAMVRD 60 (274)
Q Consensus 2 ~I~L~-----~~L~v~---snkTI~G~G~~~~i-~~------G~------~l~i~~~~NVIIrnl~i~~~~~~~~~~~~~ 60 (274)
+|.++ +.|.|. +|+||.|.|.+.+| ++ |. .+. ..+++++.|||.|++-...
T Consensus 267 vI~Ik~G~Y~E~V~i~~~k~~i~l~G~g~~~TiIt~~~~~~dg~~T~~SaT~~-v~~~~F~a~nitf~Ntag~------- 338 (548)
T PLN02301 267 VIYVKKGTYKENVEIGKKKKNLMLVGDGMDSTIITGSLNVIDGSTTFRSATVA-AVGDGFIAQDIWFQNTAGP------- 338 (548)
T ss_pred EEEEeCceeeEEEEecCCCceEEEEecCCCCcEEEeCCccCCCCCceeeEEEE-EECCceEEEeeEEEECCCC-------
Confidence 46665 456663 68999999875444 31 21 123 3679999999999984310
Q ss_pred CCCCCCCccccCCCeEEee-CCeeEEEeceeccCCCCCeEE
Q 023995 61 SPRHFGWRTVSDGDGVSIF-GGTHIWVDHCSLSNCDDGLVD 100 (274)
Q Consensus 61 ~~~~~~~~~~~~~DaI~i~-~~~nVWIDHcs~s~~~Dglid 100 (274)
...-|+.++ .+...-+.+|.|....|=|.+
T Consensus 339 ----------~~~QAVAlrv~~D~~~fy~C~~~G~QDTLy~ 369 (548)
T PLN02301 339 ----------EKHQAVALRVSADQAVINRCRIDAYQDTLYA 369 (548)
T ss_pred ----------CCCceEEEEecCCcEEEEeeeeeecccccee
Confidence 233556565 467888999999887665543
No 63
>PLN02671 pectinesterase
Probab=90.06 E-value=3.5 Score=39.88 Aligned_cols=99 Identities=15% Similarity=0.267 Sum_probs=62.8
Q ss_pred eEEec-----ceEEc---CCCceEEeecC---ceEEec----------C--------CcEEEeeeceEEEEceEEEeccc
Q 023995 2 TIRLK-----EELIM---NSFKTIDGRGA---SVHIAG----------G--------PCITIQYVTNIIIHGLNIHDCKK 52 (274)
Q Consensus 2 ~I~L~-----~~L~v---~snkTI~G~G~---~~~i~~----------G--------~~l~i~~~~NVIIrnl~i~~~~~ 52 (274)
+|.++ +.|.| ++++||.|.|. ...|.. | +.+.+ .+++++.+||+|++-.+
T Consensus 90 ~I~Ik~GvY~EkV~I~~~k~~Itl~G~g~~~~~TvIt~~~~a~~~~~~g~~~gT~~SaTv~v-~a~~F~a~nitfeNt~~ 168 (359)
T PLN02671 90 KIYILPGIYREKVLVPKSKPYISFIGNESRAGDTVISWNDKASDLDSNGFELGTYRTASVTI-ESDYFCATGITFENTVV 168 (359)
T ss_pred EEEEeCceEEEEEEECCCCCeEEEEecCCCCCCEEEEcCCcccccccCCccccceeeEEEEE-ECCceEEEeeEEEcCCC
Confidence 46665 45677 47889999863 344551 1 11333 67999999999998532
Q ss_pred CCCccccCCCCCCCCccccCCCeEEee-CCeeEEEeceeccCCCCCeEEeeeCCceEEEEcceecc
Q 023995 53 GGNAMVRDSPRHFGWRTVSDGDGVSIF-GGTHIWVDHCSLSNCDDGLVDAIHGSTAITISNNFMTH 117 (274)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~~DaI~i~-~~~nVWIDHcs~s~~~Dglidv~~~s~~vTvS~~~f~~ 117 (274)
..+ + ..++-|+.+. .+.++-+.+|.|....|=|++-. + .--..+|++..
T Consensus 169 ~~~----------g---~~~~QAVALrv~gDra~f~~c~f~G~QDTLy~~~-g--R~yf~~CyIeG 218 (359)
T PLN02671 169 AEP----------G---GQGMQAVALRISGDKAFFYKVRVLGAQDTLLDET-G--SHYFYQCYIQG 218 (359)
T ss_pred CCC----------C---CCCccEEEEEEcCccEEEEcceEeccccccEeCC-C--cEEEEecEEEE
Confidence 110 0 1234555555 46889999999999999888643 2 23344666653
No 64
>COG5434 PGU1 Endopygalactorunase [Cell envelope biogenesis, outer membrane]
Probab=88.37 E-value=2.8 Score=42.71 Aligned_cols=95 Identities=19% Similarity=0.289 Sum_probs=66.1
Q ss_pred cEEEeeeceEEEEceEEEecccCCCccccCCCCCCCCccccCCCeEEee------------CCeeEEEeceeccCCCCCe
Q 023995 31 CITIQYVTNIIIHGLNIHDCKKGGNAMVRDSPRHFGWRTVSDGDGVSIF------------GGTHIWVDHCSLSNCDDGL 98 (274)
Q Consensus 31 ~l~i~~~~NVIIrnl~i~~~~~~~~~~~~~~~~~~~~~~~~~~DaI~i~------------~~~nVWIDHcs~s~~~Dgl 98 (274)
+|.+..++||.|.+.+|.- +.|+|.+. -+++|||=||.|+.++-++
T Consensus 289 G~d~~sc~NvlI~~~~fdt----------------------gDD~I~iksg~~~~~~~~~~~~~~i~i~~c~~~~ghG~~ 346 (542)
T COG5434 289 GFDPGSCSNVLIEGCRFDT----------------------GDDCIAIKSGAGLDGKKGYGPSRNIVIRNCYFSSGHGGL 346 (542)
T ss_pred ccccccceeEEEeccEEec----------------------CCceEEeecccCCcccccccccccEEEecceecccccce
Confidence 6778889999999999974 23333332 2578999999999988887
Q ss_pred EEee---eCCceEEEEcceecccCeeeEecCCCcccCCCcceEEEEeeEEcCCC
Q 023995 99 VDAI---HGSTAITISNNFMTHHDKVMLLGHSDTYTQDKNMQVTIAFNHFGEGL 149 (274)
Q Consensus 99 idv~---~~s~~vTvS~~~f~~h~k~~l~G~sd~~~~d~~~~vT~hhN~f~~~~ 149 (274)
+.-. .+-.+||+-+|.|.+-+.+.-|...+.-. -+.-+|+|+-|.- ++.
T Consensus 347 v~Gse~~ggv~ni~ved~~~~~~d~GLRikt~~~~g-G~v~nI~~~~~~~-~nv 398 (542)
T COG5434 347 VLGSEMGGGVQNITVEDCVMDNTDRGLRIKTNDGRG-GGVRNIVFEDNKM-RNV 398 (542)
T ss_pred EeeeecCCceeEEEEEeeeeccCcceeeeeeecccc-eeEEEEEEecccc-cCc
Confidence 7632 45579999999999977776665444321 1122466666665 444
No 65
>PLN02497 probable pectinesterase
Probab=85.98 E-value=33 Score=32.87 Aligned_cols=88 Identities=19% Similarity=0.327 Sum_probs=55.1
Q ss_pred eEEec-----ceEEc---CCCceEEeecCce-EEe--c------CCcEEEeeeceEEEEceEEEecccCCCccccCCCCC
Q 023995 2 TIRLK-----EELIM---NSFKTIDGRGASV-HIA--G------GPCITIQYVTNIIIHGLNIHDCKKGGNAMVRDSPRH 64 (274)
Q Consensus 2 ~I~L~-----~~L~v---~snkTI~G~G~~~-~i~--~------G~~l~i~~~~NVIIrnl~i~~~~~~~~~~~~~~~~~ 64 (274)
+|.++ +.|.| ++++||.|.|..- .|. . -+.+.+ .+++++.+||+|++-.+...
T Consensus 63 ~I~Ik~G~Y~EkV~Ip~~k~~itl~G~g~~~tiIt~~~~~~t~~SaT~~v-~a~~f~a~nlT~~Nt~~~~~--------- 132 (331)
T PLN02497 63 CINVKAGLYREKVKIPYDKPFIVLVGAGKRRTRIEWDDHDSTAQSPTFST-LADNTVVKSITFANSYNFPS--------- 132 (331)
T ss_pred EEEEeCcEEEEEEEecCCCCcEEEEecCCCCceEEEeccccccCceEEEE-ecCCeEEEccEEEeCCCCcc---------
Confidence 46665 45666 3789999998643 333 1 113444 68999999999998542100
Q ss_pred CCCccccCCCeEEee-CCeeEEEeceeccCCCCCeEE
Q 023995 65 FGWRTVSDGDGVSIF-GGTHIWVDHCSLSNCDDGLVD 100 (274)
Q Consensus 65 ~~~~~~~~~DaI~i~-~~~nVWIDHcs~s~~~Dglid 100 (274)
.+. ...+.-|+.+. .+.++-+.+|.|....|=|++
T Consensus 133 ~~~-~~~~~QAVAl~v~gDr~~fy~C~f~G~QDTLy~ 168 (331)
T PLN02497 133 KGN-KNPRVPAVAAMIGGDKSAFYSCGFAGVQDTLWD 168 (331)
T ss_pred ccC-CCCCcceEEEEecCCcEEEEeeEEeccccceee
Confidence 000 00133566665 477888999999887776654
No 66
>COG3866 PelB Pectate lyase [Carbohydrate transport and metabolism]
Probab=85.63 E-value=5.9 Score=37.68 Aligned_cols=118 Identities=13% Similarity=0.126 Sum_probs=74.2
Q ss_pred CCeEEeeCCeeEEEeceeccCCC-----CCeEEeeeCCceEEEEcceecccCeeeEecCCCc--ccCCCcceEEEEeeEE
Q 023995 73 GDGVSIFGGTHIWVDHCSLSNCD-----DGLVDAIHGSTAITISNNFMTHHDKVMLLGHSDT--YTQDKNMQVTIAFNHF 145 (274)
Q Consensus 73 ~DaI~i~~~~nVWIDHcs~s~~~-----Dglidv~~~s~~vTvS~~~f~~h~k~~l~G~sd~--~~~d~~~~vT~hhN~f 145 (274)
+-+|.|..+.||+|--.+|.... +-.|.+..++.+|=|-+|.|..|....---+.|. +.....-.||+-.|+|
T Consensus 116 g~gl~i~~a~NVIirNltf~~~~~~d~~~D~Isi~~~~~nIWIDH~tf~~~s~~~~~~h~DGl~Dik~~AnyITiS~n~f 195 (345)
T COG3866 116 GGGLKIRDAGNVIIRNLTFEGFYQGDPNYDAISIYDDGHNIWIDHNTFSGGSYNASGSHGDGLVDIKKDANYITISYNKF 195 (345)
T ss_pred eceEEEEeCCcEEEEeeEEEeeccCCCCCCcEEeccCCeEEEEEeeEeccccccccccCCCccEEeccCCcEEEEEeeee
Confidence 45688888999999999999865 4567777788999999999987654311112222 1122345799999999
Q ss_pred cCCCcCCCceee--------cc--EEEEEcceecCccceEEeeCCCceEEeeccEEeC
Q 023995 146 GEGLVQRIPRCR--------HG--YFHVVNNDYTHWEMYAIGGSANPTINSQGNRFAA 193 (274)
Q Consensus 146 ~~~~~~R~Pr~R--------~G--~~hv~NN~~~~~~~yaig~~~~~~i~~e~N~F~~ 193 (274)
.++-.+ -.+. -| .+-+-+|+|.+-...+-..+ -..+.+-+|||+.
T Consensus 196 hdh~Ks--sl~G~sD~~~~~~~~~kvT~hhNyFkn~~qR~PriR-fG~vHvyNNYy~~ 250 (345)
T COG3866 196 HDHDKS--SLLGSSDSSNYDDGKYKVTIHHNYFKNLYQRGPRIR-FGMVHVYNNYYEG 250 (345)
T ss_pred ecCCee--eeeccCCcccccCCceeEEEeccccccccccCCceE-eeEEEEecccccc
Confidence 533221 1221 13 35566888887533211110 1246788999984
No 67
>PRK10531 acyl-CoA thioesterase; Provisional
Probab=85.48 E-value=10 Score=37.48 Aligned_cols=52 Identities=10% Similarity=0.203 Sum_probs=37.6
Q ss_pred eeceEEEEceEEEecccCCCccccCCCCCCCCccccCCCeEEee-CCeeEEEeceeccCCCCCeEE
Q 023995 36 YVTNIIIHGLNIHDCKKGGNAMVRDSPRHFGWRTVSDGDGVSIF-GGTHIWVDHCSLSNCDDGLVD 100 (274)
Q Consensus 36 ~~~NVIIrnl~i~~~~~~~~~~~~~~~~~~~~~~~~~~DaI~i~-~~~nVWIDHcs~s~~~Dglid 100 (274)
.+++++.+||+|++-.+... ...+.-|+.+. .+..+-+.+|.|-...|=|+.
T Consensus 204 ~ad~F~a~NLTf~Ntag~~~-------------~~~~~QAVALrv~GDra~fy~C~flG~QDTLy~ 256 (422)
T PRK10531 204 QNNGLQLQNLTIENTLGDSV-------------DAGNHPAVALRTDGDKVQIENVNILGRQDTFFV 256 (422)
T ss_pred ECCCEEEEeeEEEeCCCCCC-------------CCCcceeEEEEEcCCcEEEEeeEEecccceeee
Confidence 67999999999998542110 01234566665 467899999999998888876
No 68
>COG3420 NosD Nitrous oxidase accessory protein [Inorganic ion transport and metabolism]
Probab=84.88 E-value=31 Score=33.48 Aligned_cols=73 Identities=18% Similarity=0.226 Sum_probs=55.6
Q ss_pred CCcEEEeeeceEEEEceEEEecccCCCccccCCCCCCCCccccCCCeEEeeCCeeEEEeceeccCCCCCeEEeeeCCceE
Q 023995 29 GPCITIQYVTNIIIHGLNIHDCKKGGNAMVRDSPRHFGWRTVSDGDGVSIFGGTHIWVDHCSLSNCDDGLVDAIHGSTAI 108 (274)
Q Consensus 29 G~~l~i~~~~NVIIrnl~i~~~~~~~~~~~~~~~~~~~~~~~~~~DaI~i~~~~nVWIDHcs~s~~~Dglidv~~~s~~v 108 (274)
..+|.+.++..+.|..-+|.....- +-...+++|.+.++..+-|=-..+|...||...-+ |..-
T Consensus 120 ~~Gi~l~~s~d~~i~~n~i~G~~~~--------------r~~~rGnGI~vyNa~~a~V~~ndisy~rDgIy~~~--S~~~ 183 (408)
T COG3420 120 SFGIYLHGSADVRIEGNTIQGLADL--------------RVAERGNGIYVYNAPGALVVGNDISYGRDGIYSDT--SQHN 183 (408)
T ss_pred ceEEEEeccCceEEEeeEEeecccc--------------chhhccCceEEEcCCCcEEEcCccccccceEEEcc--cccc
Confidence 3468889999999999999864321 12357899999999999999999999999987543 5556
Q ss_pred EEEcceecc
Q 023995 109 TISNNFMTH 117 (274)
Q Consensus 109 TvS~~~f~~ 117 (274)
+++.|.|++
T Consensus 184 ~~~gnr~~~ 192 (408)
T COG3420 184 VFKGNRFRD 192 (408)
T ss_pred eecccchhh
Confidence 666666663
No 69
>PF08480 Disaggr_assoc: Disaggregatase related; InterPro: IPR013687 The members of this family are disaggregatases and several hypothetical proteins of the archaeal genus Methanosarcina. Disaggregatases cause aggregates to separate into single cells [] and contain parallel beta-helix repeats. Also see IPR010671 from INTERPRO.
Probab=84.61 E-value=25 Score=31.19 Aligned_cols=87 Identities=23% Similarity=0.213 Sum_probs=54.4
Q ss_pred ceEEEEcceecccCe--eeEecCCCcccCCCcceEEEEeeEEcCCCcCCCceeec--c-------EEEEEcceecCccce
Q 023995 106 TAITISNNFMTHHDK--VMLLGHSDTYTQDKNMQVTIAFNHFGEGLVQRIPRCRH--G-------YFHVVNNDYTHWEMY 174 (274)
Q Consensus 106 ~~vTvS~~~f~~h~k--~~l~G~sd~~~~d~~~~vT~hhN~f~~~~~~R~Pr~R~--G-------~~hv~NN~~~~~~~y 174 (274)
++|-|=+|.+.+-.- .-|+|...++..+....|-+|||.|- ....+|...+ | ..-+.||+|+.-...
T Consensus 2 ~dIEIYnN~I~~T~g~GIWl~gy~~~ysk~~a~nVhIhhN~fY--~tGtn~~~~wvGGIv~sGF~ntlIENNVfDG~y~a 79 (198)
T PF08480_consen 2 DDIEIYNNTIYNTYGPGIWLFGYDGSYSKDSAKNVHIHHNIFY--DTGTNPNIDWVGGIVTSGFYNTLIENNVFDGVYHA 79 (198)
T ss_pred CceEEecceeecccCceEEEEecCCCCCccccccEEEECcEee--cCCcCCCCceeeeEEeccccccEEEeeeecccccc
Confidence 356666777765432 34677766666666668999999994 4556666543 3 236789999864332
Q ss_pred EEe----------eCCCceEEeeccEEeCC
Q 023995 175 AIG----------GSANPTINSQGNRFAAP 194 (274)
Q Consensus 175 aig----------~~~~~~i~~e~N~F~~~ 194 (274)
|+. .+.+-+..+.+|.+.+.
T Consensus 80 ai~~~y~~~~~sp~gsgyttivRNNII~NT 109 (198)
T PF08480_consen 80 AIAQMYPDYDLSPKGSGYTTIVRNNIIVNT 109 (198)
T ss_pred eEEEEecccccCCCCCceEEEEEcceEeee
Confidence 322 12344556777777664
No 70
>PF01095 Pectinesterase: Pectinesterase; InterPro: IPR000070 Pectinesterase 3.1.1.11 from EC (pectin methylesterase) catalyses the de-esterification of pectin into pectate and methanol. Pectin is one of the main components of the plant cell wall. In plants, pectinesterase plays an important role in cell wall metabolism during fruit ripening. In plant bacterial pathogens such as Erwinia carotovora and in fungal pathogens such as Aspergillus niger, pectinesterase is involved in maceration and soft-rotting of plant tissue. Plant pectinesterases are regulated by pectinesterase inhibitors, which are ineffective against microbial enzymes []. Prokaryotic and eukaryotic pectinesterases share a few regions of sequence similarity. The crystal structure of pectinesterase from Erwinia chrysanthemi revealed a beta-helix structure similar to that found in pectinolytic enzymes, though it is different from most structures of esterases []. The putative catalytic residues are in a similar location to those of the active site and substrate-binding cleft of pectate lyase.; GO: 0030599 pectinesterase activity, 0042545 cell wall modification, 0005618 cell wall; PDB: 1QJV_B 1XG2_A 1GQ8_A 2NTQ_A 2NTP_A 2NT9_A 2NT6_B 2NSP_B 2NTB_A 2NST_A ....
Probab=84.46 E-value=5.3 Score=37.57 Aligned_cols=100 Identities=12% Similarity=0.232 Sum_probs=54.9
Q ss_pred ceEEcC---CCceEEeecCceE-EecC------------CcEEEeeeceEEEEceEEEecccCCCccccCCCCCCCCccc
Q 023995 7 EELIMN---SFKTIDGRGASVH-IAGG------------PCITIQYVTNIIIHGLNIHDCKKGGNAMVRDSPRHFGWRTV 70 (274)
Q Consensus 7 ~~L~v~---snkTI~G~G~~~~-i~~G------------~~l~i~~~~NVIIrnl~i~~~~~~~~~~~~~~~~~~~~~~~ 70 (274)
+.|.|. +++||.|.|..-+ |.+. +.|.+ .+++++.+||+|++-... ..
T Consensus 41 E~V~i~~~k~~v~l~G~~~~~tiI~~~~~~~~~~~t~~saT~~v-~a~~f~~~nit~~Nt~g~---------------~~ 104 (298)
T PF01095_consen 41 EKVTIPRSKPNVTLIGEGRDKTIITGNDNAADGGGTFRSATFSV-NADDFTAENITFENTAGP---------------SG 104 (298)
T ss_dssp --EEE-STSTTEEEEES-TTTEEEEE---TTTB-HCGGC-SEEE--STT-EEEEEEEEEHCSG---------------SG
T ss_pred cccEeccccceEEEEecCCCceEEEEeccccccccccccccccc-cccceeeeeeEEecCCCC---------------cc
Confidence 456774 5889999977533 4421 12444 689999999999984310 01
Q ss_pred cCCCeEEeeCCeeEEEeceeccCCCCCeEEeeeCCceEEEEcceecccCeeeEecCC
Q 023995 71 SDGDGVSIFGGTHIWVDHCSLSNCDDGLVDAIHGSTAITISNNFMTHHDKVMLLGHS 127 (274)
Q Consensus 71 ~~~DaI~i~~~~nVWIDHcs~s~~~Dglidv~~~s~~vTvS~~~f~~h~k~~l~G~s 127 (274)
...-||.+. +.++.+.+|.|....|-|+.-. ...-..+|++..+-- .++|..
T Consensus 105 ~qAvAl~~~-~d~~~f~~c~~~g~QDTL~~~~---~r~y~~~c~IeG~vD-FIfG~~ 156 (298)
T PF01095_consen 105 GQAVALRVS-GDRAAFYNCRFLGYQDTLYANG---GRQYFKNCYIEGNVD-FIFGNG 156 (298)
T ss_dssp ----SEEET--TSEEEEEEEEE-STT-EEE-S---SEEEEES-EEEESEE-EEEESS
T ss_pred cceeeeeec-CCcEEEEEeEEccccceeeecc---ceeEEEeeEEEecCc-EEECCe
Confidence 233456654 5788999999999999887532 345556777764311 346654
No 71
>PF03211 Pectate_lyase: Pectate lyase; InterPro: IPR004898 Pectate lyase is responsible for the maceration and soft-rotting of plant tissue. It catalyses the eliminative cleavage of pectate to produce oligosaccharides with 4-deoxy-alpha-D-gluc-4-enuronosyl groups at their non-reducing ends. Pectate lyase is an extracellular enzyme and is induced by pectin. It is subject to self-catabolite repression, and has been implicated in plant disease. The structure and the folding kinetics of one member of this family, pectate lyase C (pelC)1 from Erwinia chrysanthemi has been investigated in some detail []. PelC contains a parallel beta-helix folding motif. The majority of the regular secondary structure is composed of parallel beta-sheets (about 30%). The individual strands of the sheets are connected by unordered loops of varying length. The backbone is then formed by a large helix composed of beta-sheets. There are two disulphide bonds in pelC and 12 proline residues. One of these prolines, Pro220, is involved in a cis peptide bond. he folding mechanism of pelC involves two slow phases that have been attributed to proline isomerization.; GO: 0030570 pectate lyase activity, 0005576 extracellular region; PDB: 3T9G_B 3B90_B 3B8Y_A 3B4N_B 1EE6_A.
Probab=79.13 E-value=15 Score=33.11 Aligned_cols=109 Identities=17% Similarity=0.305 Sum_probs=64.0
Q ss_pred eEEecceEEcCCCceEEeecCc-----eEEecC-------CcEEEee---eceEEEE-----ceEEEecccCCCccccCC
Q 023995 2 TIRLKEELIMNSFKTIDGRGAS-----VHIAGG-------PCITIQY---VTNIIIH-----GLNIHDCKKGGNAMVRDS 61 (274)
Q Consensus 2 ~I~L~~~L~v~snkTI~G~G~~-----~~i~~G-------~~l~i~~---~~NVIIr-----nl~i~~~~~~~~~~~~~~ 61 (274)
++.+++++.|++..|.+|.... ..+.++ +-|.|.+ -+||||= .|+... +-.+
T Consensus 15 ~~~~~~~i~V~aG~~fDG~~k~~~~~~~~~~~~~q~e~q~~vF~le~GatlkNvIiG~~~~dGIHC~G-----~Ctl--- 86 (215)
T PF03211_consen 15 TVTVSSTIVVKAGEVFDGGMKRYDRGPSACGDGGQSEDQDPVFILEDGATLKNVIIGANQADGIHCKG-----SCTL--- 86 (215)
T ss_dssp EEEESS-EEE-TTEEEEEEEEEEEECCCTT--SSSGSC---SEEEETTEEEEEEEETSS-TT-EEEES-----CEEE---
T ss_pred ceEcccCeEECCCceEeCCeeEEccCCCccCCCCcCCccceEEEecCCCEEEEEEEcCCCcCceEEcC-----CEEE---
Confidence 4578899999999999886321 111100 1144432 3677772 333332 1111
Q ss_pred CCCCCCccccCCCeEEeeCCe-eEEEeceeccCCCCCeEEeeeCCceEEEEcceecccCee
Q 023995 62 PRHFGWRTVSDGDGVSIFGGT-HIWVDHCSLSNCDDGLVDAIHGSTAITISNNFMTHHDKV 121 (274)
Q Consensus 62 ~~~~~~~~~~~~DaI~i~~~~-nVWIDHcs~s~~~Dglidv~~~s~~vTvS~~~f~~h~k~ 121 (274)
...||..-..||+++.+.. .+.|.-..+..+.|..|-.. +.-.++|++-...++.|.
T Consensus 87 --~NVwwedVcEDA~T~kg~~~~~~I~ggga~~A~DKV~Q~N-g~Gtv~I~nF~a~d~GKl 144 (215)
T PF03211_consen 87 --ENVWWEDVCEDAATFKGDGGTVTIIGGGARNASDKVFQHN-GGGTVTIKNFYAEDFGKL 144 (215)
T ss_dssp --EEEEESS-SSESEEEESSEEEEEEESTEEEEEEEEEEEE--SSEEEEEEEEEEEEEEEE
T ss_pred --EEEEecccceeeeEEcCCCceEEEeCCcccCCCccEEEec-CceeEEEEeEEEcCCCEE
Confidence 1235555678999998877 88888888888888888875 556788888555555443
No 72
>PF12541 DUF3737: Protein of unknown function (DUF3737) ; InterPro: IPR022208 This family of proteins is found in bacteria, archaea and eukaryotes. Proteins in this family are typically between 281 and 297 amino acids in length.
Probab=71.52 E-value=61 Score=30.29 Aligned_cols=60 Identities=15% Similarity=0.208 Sum_probs=32.9
Q ss_pred eeceEEEEceEEEecccCCCccccCCCCCCCCccccCCCeEEeeCCeeEEEeceeccCCCCCeEEeeeCCceEEEEccee
Q 023995 36 YVTNIIIHGLNIHDCKKGGNAMVRDSPRHFGWRTVSDGDGVSIFGGTHIWVDHCSLSNCDDGLVDAIHGSTAITISNNFM 115 (274)
Q Consensus 36 ~~~NVIIrnl~i~~~~~~~~~~~~~~~~~~~~~~~~~~DaI~i~~~~nVWIDHcs~s~~~Dglidv~~~s~~vTvS~~~f 115 (274)
+++|..|.|.+|.++.. .+..++||-+++|.|.|-+ =.++ +++++|.+|.|
T Consensus 17 ~~~d~~l~~~~f~dGES------------------------~LKes~nI~~~~~~F~~KY----P~Wh-~~~~~i~~~~f 67 (277)
T PF12541_consen 17 GSHDLRLENCTFADGES------------------------PLKESRNIELKNCIFKWKY----PLWH-SDNIKIENCYF 67 (277)
T ss_pred ccCCCEEEeeEEeCCCc------------------------ccccccceEEECCEEeeEC----ceEE-ECCeEEEeeEE
Confidence 56777777777774321 1234666777777766521 1222 34555556666
Q ss_pred cccCeeeEe
Q 023995 116 THHDKVMLL 124 (274)
Q Consensus 116 ~~h~k~~l~ 124 (274)
.+--+..|+
T Consensus 68 ~~~aRa~iW 76 (277)
T PF12541_consen 68 TEMARAAIW 76 (277)
T ss_pred eecceeeee
Confidence 655555444
No 73
>COG3420 NosD Nitrous oxidase accessory protein [Inorganic ion transport and metabolism]
Probab=57.60 E-value=1.9e+02 Score=28.21 Aligned_cols=18 Identities=22% Similarity=0.628 Sum_probs=14.9
Q ss_pred cEEEeeeceEEEEceEEEe
Q 023995 31 CITIQYVTNIIIHGLNIHD 49 (274)
Q Consensus 31 ~l~i~~~~NVIIrnl~i~~ 49 (274)
.+++ .+-++|||.|++|+
T Consensus 71 ~vtv-~aP~~~v~Gl~vr~ 88 (408)
T COG3420 71 YVTV-AAPDVIVEGLTVRG 88 (408)
T ss_pred EEEE-eCCCceeeeEEEec
Confidence 3555 78999999999995
No 74
>PRK10123 wcaM putative colanic acid biosynthesis protein; Provisional
Probab=52.06 E-value=30 Score=33.02 Aligned_cols=56 Identities=14% Similarity=0.274 Sum_probs=38.6
Q ss_pred EEeeeceEEEEceEEEecccCCCccccCCCCCCCCccccCCCeEEeeCCeeEEEeceeccCCCCCeE
Q 023995 33 TIQYVTNIIIHGLNIHDCKKGGNAMVRDSPRHFGWRTVSDGDGVSIFGGTHIWVDHCSLSNCDDGLV 99 (274)
Q Consensus 33 ~i~~~~NVIIrnl~i~~~~~~~~~~~~~~~~~~~~~~~~~~DaI~i~~~~nVWIDHcs~s~~~Dgli 99 (274)
.+.+.+..||||++-+++.|..+. ...-|.-.+.|+++.|..||...+-.+.--|+
T Consensus 263 hvengkhfvirnvkaknitpdfsk-----------kagidnatvaiygcdnfvidni~mvnsagmli 318 (464)
T PRK10123 263 HVENGKHFVIRNIKAKNITPDFSK-----------KAGIDNATVAIYGCDNFVIDNIEMINSAGMLI 318 (464)
T ss_pred EecCCcEEEEEeeeccccCCCchh-----------hcCCCcceEEEEcccceEEeccccccccccEE
Confidence 456778999999999988764321 11124445788999999999887766544333
No 75
>PLN02698 Probable pectinesterase/pectinesterase inhibitor
Probab=50.20 E-value=87 Score=31.72 Aligned_cols=52 Identities=15% Similarity=0.268 Sum_probs=36.1
Q ss_pred cEEEeeeceEEEEceEEEecccCCCccccCCCCCCCCccccCCCeEEee-CCeeEEEeceeccCCCCCeEE
Q 023995 31 CITIQYVTNIIIHGLNIHDCKKGGNAMVRDSPRHFGWRTVSDGDGVSIF-GGTHIWVDHCSLSNCDDGLVD 100 (274)
Q Consensus 31 ~l~i~~~~NVIIrnl~i~~~~~~~~~~~~~~~~~~~~~~~~~~DaI~i~-~~~nVWIDHcs~s~~~Dglid 100 (274)
.+.+ .+++++.|||+|++-... .+.-|+.++ .+.++-+.+|.|....|=|.+
T Consensus 264 T~~v-~~~~F~a~nitf~Ntag~-----------------~~~QAvAl~v~~D~~~fy~c~~~G~QDTLy~ 316 (497)
T PLN02698 264 TFTI-TGDGFIARDIGFKNAAGP-----------------KGEQAIALSITSDHSVLYRCSIAGYQDTLYA 316 (497)
T ss_pred eEEE-ECCCeEEEeeEEEECCCC-----------------CCCceEEEEecCCcEEEEcceeecccchhee
Confidence 4554 689999999999984310 123455555 467888889999887665554
No 76
>TIGR03804 para_beta_helix parallel beta-helix repeat (two copies). This model represents a tandem pair of an approximately 22-amino acid (each) repeat homologous to the beta-strand repeats that stack in a right-handed parallel beta-helix in the periplasmic C-5 mannuronan epimerase, AlgA, of Pseudomonas aeruginosa. A homology domain consisting of a longer tandem array of these repeats is described in the SMART database as CASH (SM00722), and is found in many carbohydrate-binding proteins and sugar hydrolases. A single repeat is represented by SM00710. This TIGRFAMs model represents a flavor of the parallel beta-helix-forming repeat based on prokaryotic sequences only in its seed alignment, although it also finds many eukaryotic sequences.
Probab=45.83 E-value=39 Score=21.85 Aligned_cols=39 Identities=21% Similarity=0.198 Sum_probs=18.9
Q ss_pred EEeeCCeeEEEeceeccCCCCCeEEeeeCCceEEEEcceec
Q 023995 76 VSIFGGTHIWVDHCSLSNCDDGLVDAIHGSTAITISNNFMT 116 (274)
Q Consensus 76 I~i~~~~nVWIDHcs~s~~~Dglidv~~~s~~vTvS~~~f~ 116 (274)
|.+..+++..|..++++...|| |.+. .+..-+|..|.|.
T Consensus 2 I~l~~s~~~~i~~N~i~~~~~G-I~~~-~s~~n~i~~N~~~ 40 (44)
T TIGR03804 2 IYLESSSNNTLENNTASNNSYG-IYLT-DSSNNTLSNNTAS 40 (44)
T ss_pred EEEEecCCCEEECcEEeCCCCE-EEEE-eCCCCEeECCEEE
Confidence 4444555555555555555553 2332 2344455555443
No 77
>PF08480 Disaggr_assoc: Disaggregatase related; InterPro: IPR013687 The members of this family are disaggregatases and several hypothetical proteins of the archaeal genus Methanosarcina. Disaggregatases cause aggregates to separate into single cells [] and contain parallel beta-helix repeats. Also see IPR010671 from INTERPRO.
Probab=41.16 E-value=1.6e+02 Score=26.26 Aligned_cols=74 Identities=11% Similarity=0.073 Sum_probs=46.3
Q ss_pred eCCeeEEEeceeccCC-CCCeEEe-----eeCCceEEEEcceecccCeeeEec--CCCcccCC-CcceEEEEeeEEcCCC
Q 023995 79 FGGTHIWVDHCSLSNC-DDGLVDA-----IHGSTAITISNNFMTHHDKVMLLG--HSDTYTQD-KNMQVTIAFNHFGEGL 149 (274)
Q Consensus 79 ~~~~nVWIDHcs~s~~-~Dglidv-----~~~s~~vTvS~~~f~~h~k~~l~G--~sd~~~~d-~~~~vT~hhN~f~~~~ 149 (274)
..+++|+|.|..|..+ ....++. ..|-.+..|-+|.|+.-..+.+.- ........ .....++..|.+ .++
T Consensus 31 ~~a~nVhIhhN~fY~tGtn~~~~wvGGIv~sGF~ntlIENNVfDG~y~aai~~~y~~~~~sp~gsgyttivRNNII-~NT 109 (198)
T PF08480_consen 31 DSAKNVHIHHNIFYDTGTNPNIDWVGGIVTSGFYNTLIENNVFDGVYHAAIAQMYPDYDLSPKGSGYTTIVRNNII-VNT 109 (198)
T ss_pred cccccEEEECcEeecCCcCCCCceeeeEEeccccccEEEeeeecccccceEEEEecccccCCCCCceEEEEEcceE-eee
Confidence 3467999999999985 3333332 235567789999999644443321 11112222 356688888888 688
Q ss_pred cCCC
Q 023995 150 VQRI 153 (274)
Q Consensus 150 ~~R~ 153 (274)
.+|.
T Consensus 110 ~~r~ 113 (198)
T PF08480_consen 110 RKRK 113 (198)
T ss_pred eecc
Confidence 8773
No 78
>PF12541 DUF3737: Protein of unknown function (DUF3737) ; InterPro: IPR022208 This family of proteins is found in bacteria, archaea and eukaryotes. Proteins in this family are typically between 281 and 297 amino acids in length.
Probab=39.58 E-value=3.3e+02 Score=25.59 Aligned_cols=109 Identities=17% Similarity=0.285 Sum_probs=59.5
Q ss_pred EeeeceEEEEceEEEecccCCCccccCCCCCCCCcc--------ccCCCeEEeeCCeeEEEeceeccC--CCCCeEEe--
Q 023995 34 IQYVTNIIIHGLNIHDCKKGGNAMVRDSPRHFGWRT--------VSDGDGVSIFGGTHIWVDHCSLSN--CDDGLVDA-- 101 (274)
Q Consensus 34 i~~~~NVIIrnl~i~~~~~~~~~~~~~~~~~~~~~~--------~~~~DaI~i~~~~nVWIDHcs~s~--~~Dglidv-- 101 (274)
++.++||-+.|++|.+... ..|.- ...+|.+.+ .++||-|||..+.. +.|+.=++
T Consensus 94 fR~~~~i~L~nv~~~~A~E------------t~W~c~~i~l~nv~~~gdYf~m-~s~ni~id~l~~~GnY~Fq~~kNvei 160 (277)
T PF12541_consen 94 FRECSNITLENVDIPDADE------------TLWNCRGIKLKNVQANGDYFFM-NSENIYIDNLVLDGNYSFQYCKNVEI 160 (277)
T ss_pred hhcccCcEEEeeEeCCCcc------------cCEEeCCeEEEeEEEeceEeee-eccceEEeceEEeCCEEeeceeeEEE
Confidence 3567888888888865322 22210 123343332 36788999988754 22322111
Q ss_pred -------ee---CCceEEEEcceecccCeeeEecCCCcccCCCcceEEEEeeEEcCCCcCCCceeeccEEEEEcceecC
Q 023995 102 -------IH---GSTAITISNNFMTHHDKVMLLGHSDTYTQDKNMQVTIAFNHFGEGLVQRIPRCRHGYFHVVNNDYTH 170 (274)
Q Consensus 102 -------~~---~s~~vTvS~~~f~~h~k~~l~G~sd~~~~d~~~~vT~hhN~f~~~~~~R~Pr~R~G~~hv~NN~~~~ 170 (274)
+. .+.+|||-.+.+..- -+|... -++||-++.. . +-+|++---.+-+.|.-+.+
T Consensus 161 ~ns~l~sKDAFWn~eNVtVyDS~i~GE----YLgW~S-------kNltliNC~I-~---g~QpLCY~~~L~l~nC~~~~ 224 (277)
T PF12541_consen 161 HNSKLDSKDAFWNCENVTVYDSVINGE----YLGWNS-------KNLTLINCTI-E---GTQPLCYCDNLVLENCTMID 224 (277)
T ss_pred EccEEecccccccCCceEEEcceEeee----EEEEEc-------CCeEEEEeEE-e---ccCccEeecceEEeCcEeec
Confidence 10 134555555555321 122221 2799999987 3 45677765667778887764
No 79
>PRK03174 sspH acid-soluble spore protein H; Provisional
Probab=31.96 E-value=51 Score=23.77 Aligned_cols=18 Identities=22% Similarity=0.482 Sum_probs=13.8
Q ss_pred CCeEEee-CCeeEEEecee
Q 023995 73 GDGVSIF-GGTHIWVDHCS 90 (274)
Q Consensus 73 ~DaI~i~-~~~nVWIDHcs 90 (274)
.+.|.+. .+.-|||+|+.
T Consensus 13 p~~i~VtY~G~pV~Ie~vd 31 (59)
T PRK03174 13 PDMANVTYNGVPIYIQHVD 31 (59)
T ss_pred ccceEEEECCEEEEEEEEc
Confidence 4556664 68899999997
No 80
>PF07602 DUF1565: Protein of unknown function (DUF1565); InterPro: IPR011459 These proteins share a region of homology in their N termini, and are found in several phylogenetically diverse bacteria and in the archaeon Methanosarcina acetivorans. Some of these proteins also contain characterised domains such as IPR001119 from INTERPRO (e.g. Q8YWJ6 from SWISSPROT) and IPR005084 from INTERPRO (e.g. Q9FBS2 from SWISSPROT).
Probab=30.58 E-value=2.9e+02 Score=25.39 Aligned_cols=71 Identities=15% Similarity=0.135 Sum_probs=39.8
Q ss_pred CCcEEEeeeceEEEEceEEEecccCCCccccCCCCCCCCccccCCCeEEeeCC------eeEEEeceeccCCCCCeEEee
Q 023995 29 GPCITIQYVTNIIIHGLNIHDCKKGGNAMVRDSPRHFGWRTVSDGDGVSIFGG------THIWVDHCSLSNCDDGLVDAI 102 (274)
Q Consensus 29 G~~l~i~~~~NVIIrnl~i~~~~~~~~~~~~~~~~~~~~~~~~~~DaI~i~~~------~nVWIDHcs~s~~~Dglidv~ 102 (274)
|.++.+..+ +..|+|-+|.++. .++|.+.+. .++.|.-.++....-|..-..
T Consensus 114 g~Gi~Iess-~~tI~Nntf~~~~---------------------~~GI~v~g~~~~~~i~~~vI~GN~~~~~~~Gi~i~~ 171 (246)
T PF07602_consen 114 GTGIWIESS-SPTIANNTFTNNG---------------------REGIFVTGTSANPGINGNVISGNSIYFNKTGISISD 171 (246)
T ss_pred ceEEEEecC-CcEEEeeEEECCc---------------------cccEEEEeeecCCcccceEeecceEEecCcCeEEEc
Confidence 456888555 8999999999743 234444322 344455555555444432211
Q ss_pred -eCCceEEEEcceecccCee
Q 023995 103 -HGSTAITISNNFMTHHDKV 121 (274)
Q Consensus 103 -~~s~~vTvS~~~f~~h~k~ 121 (274)
...-..+|.+|+|.+-..+
T Consensus 172 ~~~~~~n~I~NN~I~~N~~G 191 (246)
T PF07602_consen 172 NAAPVENKIENNIIENNNIG 191 (246)
T ss_pred ccCCccceeeccEEEeCCcC
Confidence 1122247788888865444
No 81
>PRK01625 sspH acid-soluble spore protein H; Provisional
Probab=29.01 E-value=62 Score=23.35 Aligned_cols=18 Identities=17% Similarity=0.815 Sum_probs=13.8
Q ss_pred CCeEEee-CCeeEEEecee
Q 023995 73 GDGVSIF-GGTHIWVDHCS 90 (274)
Q Consensus 73 ~DaI~i~-~~~nVWIDHcs 90 (274)
.+.|.+. .+.-|||+|+.
T Consensus 13 ~~~i~V~Y~G~pV~Iq~vd 31 (59)
T PRK01625 13 SSRIDVTYEGVPVWIESCD 31 (59)
T ss_pred CcceEEEECCEEEEEEEEc
Confidence 4556664 68899999997
No 82
>KOG1777 consensus Putative Zn-finger protein [General function prediction only]
Probab=27.95 E-value=40 Score=33.86 Aligned_cols=45 Identities=24% Similarity=0.302 Sum_probs=35.2
Q ss_pred EEecceEEcCCCceEEeecCceEEec-CCcEEEeeeceEEEEceEEEec
Q 023995 3 IRLKEELIMNSFKTIDGRGASVHIAG-GPCITIQYVTNIIIHGLNIHDC 50 (274)
Q Consensus 3 I~L~~~L~v~snkTI~G~G~~~~i~~-G~~l~i~~~~NVIIrnl~i~~~ 50 (274)
||-.+.-.+.-||--+||+.+|+|.+ |.+|.. +|-|+||--|++.
T Consensus 468 IKTds~PtlrRNKI~dgRdgGicifngGkGlle---~neif~Nalit~S 513 (625)
T KOG1777|consen 468 IKTDSNPTLRRNKIYDGRDGGICIFNGGKGLLE---HNEIFRNALITDS 513 (625)
T ss_pred EecCCCcceeecceecCCCCcEEEecCCceeee---chhhhhccccccC
Confidence 66666667788999999999999984 556664 7889999877653
No 83
>TIGR02861 SASP_H small acid-soluble spore protein, H-type. This model is derived from pfam08141 but has been expanded to include in the seed corresponding proteins from three species of Clostridium. Members of this family should occur only in endospore-forming bacteria, typically with two members per genome, but may be absent from the genomes of some endospore-forming bacteria. SspH (previously designated YfjU) was shown to be expressed specifically in spores of Bacillus subtilis.
Probab=25.22 E-value=78 Score=22.70 Aligned_cols=18 Identities=11% Similarity=0.490 Sum_probs=13.6
Q ss_pred CCeEEee-CCeeEEEecee
Q 023995 73 GDGVSIF-GGTHIWVDHCS 90 (274)
Q Consensus 73 ~DaI~i~-~~~nVWIDHcs 90 (274)
.+.|.+. .+.-|||+|+.
T Consensus 13 ~~~i~V~Y~G~pV~Ie~vd 31 (58)
T TIGR02861 13 PEMINVTYKGVPVYIEHVD 31 (58)
T ss_pred ccceEEEECCEEEEEEEEc
Confidence 3456664 68899999996
No 84
>PF01696 Adeno_E1B_55K: Adenovirus EB1 55K protein / large t-antigen; InterPro: IPR002612 This family consists of adenovirus E1B 55 kDa protein or large t-antigen. E1B 55 kDa binds p53 the tumor suppressor protein converting it from a transcriptional activator which responds to damaged DNA in to an unregulated repressor of genes with a p53 binding site []. This protects the virus against p53 induced host antiviral responses and prevents apoptosis as induced by the adenovirus E1A protein []. The E1B region of adenovirus encodes two proteins E1B 55 kDa, the large t-antigen as found in this family and E1B 19 kDa IPR002924 from INTERPRO, the small t-antigen. Both of these proteins inhibit E1A induced apoptosis.
Probab=25.12 E-value=2.9e+02 Score=27.23 Aligned_cols=78 Identities=12% Similarity=0.038 Sum_probs=46.6
Q ss_pred CCceEEEEcceecc---cCeeeEecCCCcccCCCcceEEEEeeEEcCCCcCCCceeeccEEEEEcceecCccceEEeeCC
Q 023995 104 GSTAITISNNFMTH---HDKVMLLGHSDTYTQDKNMQVTIAFNHFGEGLVQRIPRCRHGYFHVVNNDYTHWEMYAIGGSA 180 (274)
Q Consensus 104 ~s~~vTvS~~~f~~---h~k~~l~G~sd~~~~d~~~~vT~hhN~f~~~~~~R~Pr~R~G~~hv~NN~~~~~~~yaig~~~ 180 (274)
+=..||..++.|.. |.-+...... +++||.+.| .+...=.=.++ +...+....|+.-. -|+-...
T Consensus 119 gM~~VtF~ni~F~~~~~~~g~~f~~~t---------~~~~hgC~F-~gf~g~cl~~~-~~~~VrGC~F~~C~-~gi~~~~ 186 (386)
T PF01696_consen 119 GMEGVTFVNIRFEGRDTFSGVVFHANT---------NTLFHGCSF-FGFHGTCLESW-AGGEVRGCTFYGCW-KGIVSRG 186 (386)
T ss_pred eeeeeEEEEEEEecCCccceeEEEecc---------eEEEEeeEE-ecCcceeEEEc-CCcEEeeeEEEEEE-EEeecCC
Confidence 45689999999984 3333333322 899999999 45443333333 56666666665421 2444444
Q ss_pred CceEEeeccEEeC
Q 023995 181 NPTINSQGNRFAA 193 (274)
Q Consensus 181 ~~~i~~e~N~F~~ 193 (274)
..++.+-.+.|+.
T Consensus 187 ~~~lsVk~C~Fek 199 (386)
T PF01696_consen 187 KSKLSVKKCVFEK 199 (386)
T ss_pred cceEEeeheeeeh
Confidence 5556666666665
No 85
>smart00710 PbH1 Parallel beta-helix repeats. The tertiary structures of pectate lyases and rhamnogalacturonase A show a stack of parallel beta strands that are coiled into a large helix. Each coil of the helix represents a structural repeat that, in some homologues, can be recognised from sequence information alone. Conservation of asparagines might be connected with asparagine-ladders that contribute to the stability of the fold. Proteins containing these repeats most often are enzymes with polysaccharide substrates.
Probab=22.26 E-value=99 Score=16.47 Aligned_cols=14 Identities=7% Similarity=0.295 Sum_probs=7.1
Q ss_pred eEEEeceeccCCCC
Q 023995 83 HIWVDHCSLSNCDD 96 (274)
Q Consensus 83 nVWIDHcs~s~~~D 96 (274)
+++|.+|+|+....
T Consensus 3 ~~~i~~n~i~~~~~ 16 (26)
T smart00710 3 NVTIENNTIRNNGG 16 (26)
T ss_pred CEEEECCEEEeCCC
Confidence 45555555555444
No 86
>PF06355 Aegerolysin: Aegerolysin; InterPro: IPR009413 This family consists of several bacterial and eukaryotic Aegerolysin-like proteins. Aegerolysin and ostreolysin are expressed during formation of primordia and fruiting bodies, and these haemolysins may play an important role in initial phase of fungal fruiting. The bacterial members of this family are expressed during sporulation []. Ostreolysin was found cytolytic to various erythrocytes and tumour cells []. It forms transmembrane pores 4 nm in diameter. Its activity is inhibited by total membrane lipids, and modulated by lysophosphatides.; GO: 0019836 hemolysis by symbiont of host erythrocytes, 0030582 fruiting body development
Probab=22.18 E-value=3.8e+02 Score=22.16 Aligned_cols=71 Identities=18% Similarity=0.223 Sum_probs=46.1
Q ss_pred eceEEEEceEEEecccCCCccccCCCCCCCCccccCCCeEEeeCCeeEEEeceeccC---CCCCeEEeeeCCceE-EEEc
Q 023995 37 VTNIIIHGLNIHDCKKGGNAMVRDSPRHFGWRTVSDGDGVSIFGGTHIWVDHCSLSN---CDDGLVDAIHGSTAI-TISN 112 (274)
Q Consensus 37 ~~NVIIrnl~i~~~~~~~~~~~~~~~~~~~~~~~~~~DaI~i~~~~nVWIDHcs~s~---~~Dglidv~~~s~~v-TvS~ 112 (274)
..++-|||..++.++--.+. +..... ...+-|.+.|......+|-=|.-++ ++.|.||+..+...| ||.|
T Consensus 14 ~~~l~i~Na~L~~GKfy~~~---~kd~ei---s~~~v~~~~i~~~~~~~i~scGr~~~~sGTEGsfdl~dg~~kI~~lyW 87 (131)
T PF06355_consen 14 SGDLKIKNAQLSWGKFYRDG---NKDDEI---SPDDVNGIVIPPGGSYSICSCGREGSPSGTEGSFDLYDGDTKICTLYW 87 (131)
T ss_pred CccEEEEccEeccCccccCC---CcCCEe---CccccCceEecCCCeEEEEEecCCCCCcCceEEEEEEeCCEEEEEEEE
Confidence 34788888888865421100 000011 1245678888877788888888765 588999999877777 7766
Q ss_pred c
Q 023995 113 N 113 (274)
Q Consensus 113 ~ 113 (274)
.
T Consensus 88 d 88 (131)
T PF06355_consen 88 D 88 (131)
T ss_pred e
Confidence 4
No 87
>PF08141 SspH: Small acid-soluble spore protein H family; InterPro: IPR012610 This family consists of the small acid-soluble spore proteins (SASP) of the H type (sspH). SspH are unique to spores of Bacillus subtilis and are expressed only in the forespore compartment during sporulation of this organism. The sspH genes are monocistronic and are recognised by the forespore-specific sigma factor for RNA polymerase - sigma-G. The specific role of this protein is unclear but is thought to play a role in sporulation under conditions different from that of the common laboratory tests of spore properties [].; GO: 0030436 asexual sporulation, 0042601 endospore-forming forespore
Probab=20.46 E-value=1.2e+02 Score=21.73 Aligned_cols=18 Identities=22% Similarity=0.728 Sum_probs=13.8
Q ss_pred CCeEEee-CCeeEEEecee
Q 023995 73 GDGVSIF-GGTHIWVDHCS 90 (274)
Q Consensus 73 ~DaI~i~-~~~nVWIDHcs 90 (274)
.+.|.+. .+.-|||+|+.
T Consensus 13 ~~~i~V~y~G~pV~Ie~vd 31 (58)
T PF08141_consen 13 PDMIEVTYNGVPVWIEHVD 31 (58)
T ss_pred CceEEEEECCEEEEEEEEc
Confidence 4556664 68999999996
Done!