BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 023996
(274 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1UT4|A Chain A, Structure Of The Conserved Domain Of Anac, A Member Of The
Nac Family Of Transcription Factors
pdb|1UT4|B Chain B, Structure Of The Conserved Domain Of Anac, A Member Of The
Nac Family Of Transcription Factors
pdb|1UT7|A Chain A, Structure Of The Conserved Domain Of Anac, A Member Of The
Nac Family Of Transcription Factors
pdb|1UT7|B Chain B, Structure Of The Conserved Domain Of Anac, A Member Of The
Nac Family Of Transcription Factors
pdb|4DUL|A Chain A, Anac019 Nac Domain Crystal Form Iv
pdb|4DUL|B Chain B, Anac019 Nac Domain Crystal Form Iv
Length = 171
Score = 129 bits (323), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 73/164 (44%), Positives = 96/164 (58%), Gaps = 14/164 (8%)
Query: 4 LPPGYRFFPTEEELVSFYLINKLEGKRQELHRVIPVIRLYEIEPWHLPK--LCGEKCQGD 61
LPPG+RF+PT+EEL+ YL K G L +I I LY+ +PW LP L GEK
Sbjct: 17 LPPGFRFYPTDEELMVQYLCRKAAGYDFSLQ-LIAEIDLYKFDPWVLPNKALFGEK---- 71
Query: 62 TEQWFFFTPRQXXXXXXXXPSRTTASGYWKATGSPSYVYSSDNRVIGVKKTMVFYKGKAP 121
+W+FF+PR P+R SGYWKATG+ + S++ + +G+KK +VFY GKAP
Sbjct: 72 --EWYFFSPRDRKYPNGSRPNRVAGSGYWKATGTDKII-STEGQRVGIKKALVFYIGKAP 128
Query: 122 TGRKTKWKMHEYRAIEGASNPSSAVIPKLRHEFSLCRIYVKSES 165
G KT W MHEYR IE + S + ++ LCRIY K S
Sbjct: 129 KGTKTNWIMHEYRLIEPSRRNGSTKL----DDWVLCRIYKKQSS 168
>pdb|3SWM|A Chain A, The Nac Domain Of Anac019 In Complex With Dna, Gold
Derivative
pdb|3SWM|B Chain B, The Nac Domain Of Anac019 In Complex With Dna, Gold
Derivative
pdb|3SWM|C Chain C, The Nac Domain Of Anac019 In Complex With Dna, Gold
Derivative
pdb|3SWM|D Chain D, The Nac Domain Of Anac019 In Complex With Dna, Gold
Derivative
pdb|3SWP|A Chain A, Anac019 Nac Domain In Complex With Dna
pdb|3SWP|B Chain B, Anac019 Nac Domain In Complex With Dna
pdb|3SWP|C Chain C, Anac019 Nac Domain In Complex With Dna
pdb|3SWP|D Chain D, Anac019 Nac Domain In Complex With Dna
Length = 174
Score = 128 bits (322), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 73/164 (44%), Positives = 96/164 (58%), Gaps = 14/164 (8%)
Query: 4 LPPGYRFFPTEEELVSFYLINKLEGKRQELHRVIPVIRLYEIEPWHLPK--LCGEKCQGD 61
LPPG+RF+PT+EEL+ YL K G L +I I LY+ +PW LP L GEK
Sbjct: 20 LPPGFRFYPTDEELMVQYLCRKAAGYDFSLQ-LIAEIDLYKFDPWVLPNKALFGEK---- 74
Query: 62 TEQWFFFTPRQXXXXXXXXPSRTTASGYWKATGSPSYVYSSDNRVIGVKKTMVFYKGKAP 121
+W+FF+PR P+R SGYWKATG+ + S++ + +G+KK +VFY GKAP
Sbjct: 75 --EWYFFSPRDRKYPNGSRPNRVAGSGYWKATGTDKII-STEGQRVGIKKALVFYIGKAP 131
Query: 122 TGRKTKWKMHEYRAIEGASNPSSAVIPKLRHEFSLCRIYVKSES 165
G KT W MHEYR IE + S + ++ LCRIY K S
Sbjct: 132 KGTKTNWIMHEYRLIEPSRRNGSTKL----DDWVLCRIYKKQSS 171
>pdb|3ULX|A Chain A, Crystal Structural Of The Conserved Domain Of Rice
Stress-Responsive Nac1
Length = 174
Score = 123 bits (308), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 68/164 (41%), Positives = 93/164 (56%), Gaps = 7/164 (4%)
Query: 4 LPPGYRFFPTEEELVSFYLINKLEGKRQELHRVIPVIRLYEIEPWHLPKLCGEKCQGDTE 63
LPPG+RF PT++ELV YL K G+R + +I + LY+ +PW LP E+
Sbjct: 15 LPPGFRFHPTDDELVEHYLCRKAAGQRLPVP-IIAEVDLYKFDPWDLP----ERALFGAR 69
Query: 64 QWFFFTPRQXXXXXXXXPSRTTASGYWKATGSPSYVYSSDNRVIGVKKTMVFYKGKAPTG 123
+W+FFTPR P+R +GYWKATG+ V + R +G+KK +VFY GKAP G
Sbjct: 70 EWYFFTPRDRKYPNGSRPNRAAGNGYWKATGADKPV-APRGRTLGIKKALVFYAGKAPRG 128
Query: 124 RKTKWKMHEYRAIEGASNPSSAVIPKLR-HEFSLCRIYVKSESF 166
KT W MHEYR + + A LR ++ LCR+Y K +
Sbjct: 129 VKTDWIMHEYRLADAGRAAAGAKKGSLRLDDWVLCRLYNKKNEW 172
>pdb|2BCO|A Chain A, X-Ray Structure Of Succinylglutamate Desuccinalase From
Vibrio Parahaemolyticus (Rimd 2210633) At The Resolution
2.3 A, Northeast Structural Genomics Target Vpr14
pdb|2BCO|B Chain B, X-Ray Structure Of Succinylglutamate Desuccinalase From
Vibrio Parahaemolyticus (Rimd 2210633) At The Resolution
2.3 A, Northeast Structural Genomics Target Vpr14
Length = 350
Score = 29.6 bits (65), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 3/38 (7%)
Query: 115 FYKGKAPTGRKTKWKMHEYRAIEGASNPSSAVIPKLRH 152
FY+ P KT+W + + AI G+ + + AV PK RH
Sbjct: 140 FYQDTEP---KTRWHLDLHCAIRGSKHYTFAVSPKTRH 174
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.133 0.421
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,114,958
Number of Sequences: 62578
Number of extensions: 378099
Number of successful extensions: 703
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 689
Number of HSP's gapped (non-prelim): 7
length of query: 274
length of database: 14,973,337
effective HSP length: 97
effective length of query: 177
effective length of database: 8,903,271
effective search space: 1575878967
effective search space used: 1575878967
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (24.3 bits)