Query 023996
Match_columns 274
No_of_seqs 162 out of 958
Neff 6.2
Searched_HMMs 29240
Date Mon Mar 25 16:24:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023996.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023996hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ulx_A Stress-induced transcri 100.0 2.7E-55 9.2E-60 376.9 13.8 157 3-165 14-171 (174)
2 1ut7_A No apical meristem prot 100.0 7.5E-55 2.6E-59 373.5 12.1 155 2-166 15-169 (171)
3 1ldd_A APC2WHB, anaphase promo 28.0 30 0.001 24.8 2.1 27 5-32 37-64 (74)
4 1wpi_A YKR049C, hypothetical 1 26.9 18 0.00063 29.0 0.8 21 246-270 94-115 (133)
5 2gqp_A Endoplasmin; GRP94, HSP 24.1 14 0.00049 31.9 -0.4 12 261-272 225-236 (236)
6 1cmb_A Met APO-repressor; DNA- 19.6 1.2E+02 0.0041 22.7 3.9 38 11-53 50-87 (104)
7 3nr5_A MAF1, repressor of RNA 16.7 36 0.0012 28.2 0.5 13 37-49 119-131 (164)
8 3dz1_A Dihydrodipicolinate syn 12.8 79 0.0027 28.2 1.8 18 4-23 109-126 (313)
9 3cpr_A Dihydrodipicolinate syn 11.2 82 0.0028 27.9 1.3 18 4-22 118-135 (304)
10 3fkr_A L-2-keto-3-deoxyarabona 11.2 1.1E+02 0.0038 27.1 2.2 19 4-23 110-131 (309)
No 1
>3ulx_A Stress-induced transcription factor NAC1; NAC family, stress-responsive, DNA binding protein; 2.60A {Oryza sativa subsp} SCOP: b.143.1.1
Probab=100.00 E-value=2.7e-55 Score=376.87 Aligned_cols=157 Identities=43% Similarity=0.891 Sum_probs=129.8
Q ss_pred CCCCCceEcCChHHHHHHHHHHHhcCCCCCCCCceeeccCCCCCCCCCccccccccCCCCceEEEeccCcccccCCCCCc
Q 023996 3 ELPPGYRFFPTEEELVSFYLINKLEGKRQELHRVIPVIRLYEIEPWHLPKLCGEKCQGDTEQWFFFTPRQEREERGGRPS 82 (274)
Q Consensus 3 ~LPpGfRF~PTDeELV~~YL~~Ki~g~~~~~~~~I~~~Dvy~~~PwdLp~~~~~~~~g~~~~wyFFt~r~~k~~~G~R~~ 82 (274)
.|||||||+|||||||.+||++|+.|.+++. .+|+++|||.+|||+||+.+ ..|+ .+||||+++++++++|.|++
T Consensus 14 ~LPpGfRF~PTDeELV~~YL~~K~~g~~~~~-~~I~evDvy~~~Pw~Lp~~~---~~g~-~ewYFFs~r~~ky~~g~R~n 88 (174)
T 3ulx_A 14 NLPPGFRFHPTDDELVEHYLCRKAAGQRLPV-PIIAEVDLYKFDPWDLPERA---LFGA-REWYFFTPRDRKYPNGSRPN 88 (174)
T ss_dssp TCCTTCCCCCCHHHHHHHTHHHHHHTCCCSS-SCCEECCGGGSCGGGSGGGC---SSCS-SEEEEEEECCC-----CCSC
T ss_pred CCCCcceeCCCHHHHHHHHHHHHhcCCCCCc-CeeeecccccCCchhhhhhh---ccCC-ceEEEEeccccccCCCCCce
Confidence 6999999999999999999999999998865 69999999999999999854 3454 46999999999999999999
Q ss_pred cccccceEEecCCCeeeecCCCcEEEEEEEEEEecCcCCCCCccCcEEEEEEeCCCCCCCC-CCCCCCCCCceEEEEEEE
Q 023996 83 RTTASGYWKATGSPSYVYSSDNRVIGVKKTMVFYKGKAPTGRKTKWKMHEYRAIEGASNPS-SAVIPKLRHEFSLCRIYV 161 (274)
Q Consensus 83 R~t~~G~Wk~~G~~k~V~~~~g~viG~Kktl~Fy~g~~~~g~kT~W~M~EY~l~~~~~~~~-~~~~~~~~~e~VLCRIy~ 161 (274)
|+|++||||++|+++.|.+. |.+||+||+|+||.++++++.||+|+||||+|........ +.......++|||||||+
T Consensus 89 R~t~~G~WkatG~dk~I~~~-g~~vG~KktLvFy~g~~p~g~kT~WvMhEY~L~~~~~~~~~~~~~~~~~~~wVlCrvf~ 167 (174)
T 3ulx_A 89 RAAGNGYWKATGADKPVAPR-GRTLGIKKALVFYAGKAPRGVKTDWIMHEYRLADAGRAAAGAKKGSLRLDDWVLCRLYN 167 (174)
T ss_dssp EEETTEEEEECSCCEEECCS-SSCCEEEEEEEEEESSTTSCEEEEEEEEEEEECSCC-----------CCSSEEEEEEEE
T ss_pred eecCCceEccCCCCcEEeeC-CcEEEEEEEEEEecCCCCCCCcCCeEEEEEEeCCCCCcccccccCCCCCCCEEEEEEEE
Confidence 99999999999999999876 8999999999999999999999999999999988653211 111112357999999999
Q ss_pred eCCC
Q 023996 162 KSES 165 (274)
Q Consensus 162 k~~~ 165 (274)
|++.
T Consensus 168 K~~~ 171 (174)
T 3ulx_A 168 KKNE 171 (174)
T ss_dssp SCC-
T ss_pred cCCC
Confidence 8754
No 2
>1ut7_A No apical meristem protein; transcription regulation, transcription, transcription factor, DNA binding, abscisic acid response, NAC domain; 1.9A {Arabidopsis thaliana} SCOP: b.143.1.1 PDB: 1ut4_A 4dul_A 3swp_A 3swm_A
Probab=100.00 E-value=7.5e-55 Score=373.53 Aligned_cols=155 Identities=45% Similarity=0.897 Sum_probs=126.5
Q ss_pred CCCCCCceEcCChHHHHHHHHHHHhcCCCCCCCCceeeccCCCCCCCCCccccccccCCCCceEEEeccCcccccCCCCC
Q 023996 2 EELPPGYRFFPTEEELVSFYLINKLEGKRQELHRVIPVIRLYEIEPWHLPKLCGEKCQGDTEQWFFFTPRQEREERGGRP 81 (274)
Q Consensus 2 ~~LPpGfRF~PTDeELV~~YL~~Ki~g~~~~~~~~I~~~Dvy~~~PwdLp~~~~~~~~g~~~~wyFFt~r~~k~~~G~R~ 81 (274)
..|||||||+|||||||.+||++|+.|.+++. .+|+++|||.+|||+||+.+ ..|+ .+||||+++++++++|.|+
T Consensus 15 ~~lPpGfRF~PTDeELv~~YL~~K~~g~~~~~-~~I~e~Diy~~~Pw~Lp~~~---~~g~-~ewyFFs~r~~k~~~g~R~ 89 (171)
T 1ut7_A 15 LSLPPGFRFYPTDEELMVQYLCRKAAGYDFSL-QLIAEIDLYKFDPWVLPNKA---LFGE-KEWYFFSPRDRKYPNGSRP 89 (171)
T ss_dssp SCCCTTEEECCCHHHHHHHTHHHHHTTCCCSS-CCSEECCGGGSCGGGHHHHS---SSCS-SEEEEEEECCC-------C
T ss_pred cCCCCcceeCCChHHHHHHHHHHHhcCCCCCC-CeEeecccccCChhHhhchh---hcCC-ccEEEEeccccccCCCCcc
Confidence 46999999999999999999999999999864 69999999999999999964 3454 4699999999999999999
Q ss_pred ccccccceEEecCCCeeeecCCCcEEEEEEEEEEecCcCCCCCccCcEEEEEEeCCCCCCCCCCCCCCCCCceEEEEEEE
Q 023996 82 SRTTASGYWKATGSPSYVYSSDNRVIGVKKTMVFYKGKAPTGRKTKWKMHEYRAIEGASNPSSAVIPKLRHEFSLCRIYV 161 (274)
Q Consensus 82 ~R~t~~G~Wk~~G~~k~V~~~~g~viG~Kktl~Fy~g~~~~g~kT~W~M~EY~l~~~~~~~~~~~~~~~~~e~VLCRIy~ 161 (274)
+|+|++||||++|+++.|++. +.+||+||+|+||.++++++.||+|+||||+|..... .......++|||||||+
T Consensus 90 ~R~t~~G~Wk~tG~~k~I~~~-~~~vG~KktLvFy~g~~p~g~kT~WvMhEY~l~~~~~----~~~~~~~~~~VlCrv~~ 164 (171)
T 1ut7_A 90 NRVAGSGYWKATGTDKIISTE-GQRVGIKKALVFYIGKAPKGTKTNWIMHEYRLIEPSR----RNGSTKLDDWVLCRIYK 164 (171)
T ss_dssp CEEETTEEEEEEEEEEEEEET-TEEEEEEEEEEEEESSTTSCEEEEEEEEEEEECCCC------------CCEEEEEEEE
T ss_pred cccCCCCEEeccCCCceEEec-CcEEEEEEEEEEEcCcCCCCCcCCeEEEEEEcCCCcc----ccCcccCCCEEEEEEEE
Confidence 999999999999999999986 7999999999999999999999999999999987531 11223468999999999
Q ss_pred eCCCC
Q 023996 162 KSESF 166 (274)
Q Consensus 162 k~~~~ 166 (274)
|+.+.
T Consensus 165 k~~~~ 169 (171)
T 1ut7_A 165 KQSSA 169 (171)
T ss_dssp CC---
T ss_pred cCCCC
Confidence 98654
No 3
>1ldd_A APC2WHB, anaphase promoting complex; ubiquitin, ligase, ubiquitination, ring finger, winged-helix; 2.00A {Saccharomyces cerevisiae} SCOP: a.4.5.34
Probab=28.01 E-value=30 Score=24.85 Aligned_cols=27 Identities=22% Similarity=0.350 Sum_probs=22.6
Q ss_pred CCCceEcC-ChHHHHHHHHHHHhcCCCCC
Q 023996 5 PPGYRFFP-TEEELVSFYLINKLEGKRQE 32 (274)
Q Consensus 5 PpGfRF~P-TDeELV~~YL~~Ki~g~~~~ 32 (274)
|.|+.|.. |++||-. ||..|+....+.
T Consensus 37 ~~~~~~~~it~~eL~~-fL~~~v~e~kL~ 64 (74)
T 1ldd_A 37 PKDWGYNRITLQQLEG-YLNTLADEGRLK 64 (74)
T ss_dssp CGGGCCTTCCHHHHHH-HHHHHHHTTSEE
T ss_pred CCCCCCCcCCHHHHHH-HHHHHHhCCeEE
Confidence 66899998 8999888 799999887653
No 4
>1wpi_A YKR049C, hypothetical 15.6 kDa protein in NAP1-TRK2 intergenic region; structural genomics, OCSP, NESG, protein structure initiative; NMR {Saccharomyces cerevisiae} SCOP: c.47.1.18
Probab=26.87 E-value=18 Score=28.97 Aligned_cols=21 Identities=38% Similarity=0.985 Sum_probs=15.0
Q ss_pred CCCcccCCCcccCCCCCCCCC-Cccc
Q 023996 246 YPETNLDNNWNIVADPQPPLW-DWEQ 270 (274)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~-~~~~ 270 (274)
..+..+..+|| ++.||| ||||
T Consensus 94 L~~~~~~g~wn----~~~pL~VDWek 115 (133)
T 1wpi_A 94 LQKCVQRGLWN----PKEALWVDWEN 115 (133)
T ss_dssp THHHHTTSSCC----CCCCEEEESSS
T ss_pred HHHhhccCCcc----CCCCeEEEccc
Confidence 44555666885 778999 7985
No 5
>2gqp_A Endoplasmin; GRP94, HSP82, HSP90, HTPG, chaperone, ligand, NECA, NPCA, adenosine; HET: PA7 PG4 1PE; 1.50A {Canis lupus familiaris} SCOP: d.122.1.1 PDB: 1tc0_A* 1tbw_A* 1u0z_A* 1u2o_A* 1ysz_A* 1yt0_A* 1yt1_A* 2exl_A* 2fyp_A* 2gfd_A* 1tc6_A* 2h8m_A* 2hch_A* 2hg1_A* 3o2f_A* 2esa_A*
Probab=24.07 E-value=14 Score=31.91 Aligned_cols=12 Identities=42% Similarity=1.121 Sum_probs=7.5
Q ss_pred CCCCCCCcccCC
Q 023996 261 PQPPLWDWEQLN 272 (274)
Q Consensus 261 ~~~~~~~~~~~~ 272 (274)
-..++|+|||||
T Consensus 225 ~~~~~~~~~~~~ 236 (236)
T 2gqp_A 225 GGKTVWDWELMN 236 (236)
T ss_dssp ----CEEEEECC
T ss_pred cceeeeehhhcC
Confidence 445899999997
No 6
>1cmb_A Met APO-repressor; DNA-binding regulatory protein; 1.80A {Escherichia coli} SCOP: a.43.1.5 PDB: 1cma_A 1cmc_A* 1mjl_A* 1mj2_A 1mjk_A* 1mjm_A 1mjo_A* 1mjp_A 1mjq_A*
Probab=19.61 E-value=1.2e+02 Score=22.67 Aligned_cols=38 Identities=16% Similarity=0.168 Sum_probs=31.6
Q ss_pred cCChHHHHHHHHHHHhcCCCCCCCCceeeccCCCCCCCCCccc
Q 023996 11 FPTEEELVSFYLINKLEGKRQELHRVIPVIRLYEIEPWHLPKL 53 (274)
Q Consensus 11 ~PTDeELV~~YL~~Ki~g~~~~~~~~I~~~Dvy~~~PwdLp~~ 53 (274)
|-|..||++.-...-..|+|++. +.|+-...|.++|..
T Consensus 50 HATNSELLCEAFLHA~TGQPLP~-----D~Dl~Kd~~d~iP~~ 87 (104)
T 1cmb_A 50 HATNSELLCEAFLHAFTGQPLPD-----DADLRKERSDEIPEA 87 (104)
T ss_dssp CCSHHHHHHHHHHHHHHCCCCCC-----GGGGBTTSCSCSCHH
T ss_pred hcccHHHHHHHHHHHhcCCCCCC-----chhhhhcCCccchHH
Confidence 56889999988888889999854 578888999999874
No 7
>3nr5_A MAF1, repressor of RNA polymerase III transcription MAF; RNA-POL III transcriptional repressor, RNA-POL III; 1.55A {Homo sapiens}
Probab=16.67 E-value=36 Score=28.19 Aligned_cols=13 Identities=15% Similarity=0.291 Sum_probs=10.5
Q ss_pred eeeccCCCCCCCC
Q 023996 37 IPVIRLYEIEPWH 49 (274)
Q Consensus 37 I~~~Dvy~~~Pwd 49 (274)
+.++|||++.|..
T Consensus 119 l~dC~IYsY~Pd~ 131 (164)
T 3nr5_A 119 LAECDIYSYNPDL 131 (164)
T ss_dssp GGGCEEEEECCCG
T ss_pred ccCCeEEEEcCCC
Confidence 4578999999983
No 8
>3dz1_A Dihydrodipicolinate synthase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI2, structural genomics; 1.87A {Rhodopseudomonas palustris} SCOP: c.1.10.0
Probab=12.78 E-value=79 Score=28.19 Aligned_cols=18 Identities=22% Similarity=0.558 Sum_probs=13.6
Q ss_pred CCCCceEcCChHHHHHHHHH
Q 023996 4 LPPGYRFFPTEEELVSFYLI 23 (274)
Q Consensus 4 LPpGfRF~PTDeELV~~YL~ 23 (274)
+|| | |.||+++|+.||-.
T Consensus 109 ~~P-~-~~~s~~~l~~~f~~ 126 (313)
T 3dz1_A 109 APP-P-SLRTDEQITTYFRQ 126 (313)
T ss_dssp CCC-T-TCCSHHHHHHHHHH
T ss_pred CCC-C-CCCCHHHHHHHHHH
Confidence 566 4 56999999998643
No 9
>3cpr_A Dihydrodipicolinate synthetase; (beta/alpha)8-barrel fold with A C-terminal alpha-helical segment, amino-acid biosynthesis, cytoplasm; HET: MCL; 2.20A {Corynebacterium glutamicum}
Probab=11.21 E-value=82 Score=27.94 Aligned_cols=18 Identities=28% Similarity=0.565 Sum_probs=14.3
Q ss_pred CCCCceEcCChHHHHHHHH
Q 023996 4 LPPGYRFFPTEEELVSFYL 22 (274)
Q Consensus 4 LPpGfRF~PTDeELV~~YL 22 (274)
+|| |.|.||+++|+.||-
T Consensus 118 ~~P-~y~~~~~~~l~~~f~ 135 (304)
T 3cpr_A 118 VTP-YYSKPSQEGLLAHFG 135 (304)
T ss_dssp ECC-CSSCCCHHHHHHHHH
T ss_pred CCC-CCCCCCHHHHHHHHH
Confidence 466 558899999999874
No 10
>3fkr_A L-2-keto-3-deoxyarabonate dehydratase; DHDPS/NAL family, complex, pyruvate, lyase; HET: KPI; 1.80A {Azospirillum brasilense} PDB: 3fkk_A
Probab=11.15 E-value=1.1e+02 Score=27.15 Aligned_cols=19 Identities=37% Similarity=0.843 Sum_probs=14.5
Q ss_pred CCCCce---EcCChHHHHHHHHH
Q 023996 4 LPPGYR---FFPTEEELVSFYLI 23 (274)
Q Consensus 4 LPpGfR---F~PTDeELV~~YL~ 23 (274)
+|| |. |.||+++|+.||-.
T Consensus 110 ~~P-yy~~~~~~s~~~l~~~f~~ 131 (309)
T 3fkr_A 110 MPP-YHGATFRVPEAQIFEFYAR 131 (309)
T ss_dssp CCS-CBTTTBCCCHHHHHHHHHH
T ss_pred cCC-CCccCCCCCHHHHHHHHHH
Confidence 466 44 78999999998643
Done!