BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 023997
(274 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2G0Y|A Chain A, Crystal Structure Of A Lumenal Pentapeptide Repeat Protein
From Cyanothece Sp 51142 At 2.3 Angstrom Resolution.
Tetragonal Crystal Form
Length = 184
Score = 88.6 bits (218), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 53/135 (39%), Positives = 75/135 (55%)
Query: 100 GSAAQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGAD 159
GS+A + L ++ A FT+AD+ +S+FS + GA + A+ GAD
Sbjct: 49 GSSASYEDVKLIGEDFSGKSLTYAQFTNADLTDSNFSEADLRGAVFNGSALIGADLHGAD 108
Query: 160 LSDTLMDRMVLNEANLTNAVLVRTVLTRSDLGGAIIEGADFSDAVIDLAQKQALCKYANG 219
L++ L A+LTNAVL ++ R+ A I GADFS AV+D+ + LC A+G
Sbjct: 109 LTNGLAYLTSFKGADLTNAVLTEAIMMRTKFDDAKITGADFSLAVLDVYEVDKLCDRADG 168
Query: 220 TNPITGVSTRKSLGC 234
NP TGVSTR+SL C
Sbjct: 169 VNPKTGVSTRESLRC 183
>pdb|2F3L|A Chain A, Crystal Structure Of A Lumenal Rfr-Domain Protein
(Contig83.1_1_243_746) From Cyanothece Sp. 51142 At 2.1
Angstrom Resolution
Length = 184
Score = 87.4 bits (215), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 53/135 (39%), Positives = 74/135 (54%)
Query: 100 GSAAQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGAD 159
GS+A + L ++ A FT+AD+ +S+FS + GA + A+ GAD
Sbjct: 49 GSSASYEDVKLIGEDFSGKSLTYAQFTNADLTDSNFSEADLRGAVFNGSALIGADLHGAD 108
Query: 160 LSDTLMDRMVLNEANLTNAVLVRTVLTRSDLGGAIIEGADFSDAVIDLAQKQALCKYANG 219
L++ L A+LTNAVL + R+ A I GADFS AV+D+ + LC A+G
Sbjct: 109 LTNGLAYLTSFKGADLTNAVLTEAIXXRTKFDDAKITGADFSLAVLDVYEVDKLCDRADG 168
Query: 220 TNPITGVSTRKSLGC 234
NP TGVSTR+SL C
Sbjct: 169 VNPKTGVSTRESLRC 183
>pdb|3N90|A Chain A, The 1.7 Angstrom Resolution Crystal Structure Of
At2g44920, A Pentapeptide Repeat Protein From
Arabidopsis Thaliana Thylakoid Lumen
Length = 152
Score = 61.2 bits (147), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 44/123 (35%), Positives = 69/123 (56%), Gaps = 11/123 (8%)
Query: 118 ENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSDTLM---DRMVLN--E 172
+ R +F ++ +R+++F G+K GA + A+ TGADLS+ + D + N +
Sbjct: 26 QTLIRQDFKTSILRQANFKGAKLLGASF-----FDADLTGADLSEADLRGADFSLANVTK 80
Query: 173 ANLTNAVLV-RTVLTRSDLGGAIIEGADFSDAVIDLAQKQALCKYANGTNPITGVSTRKS 231
NLTNA L T++ + G+ I GADF+D + Q+ LCK A+G N TG +TR +
Sbjct: 81 VNLTNANLEGATMMGNTSFKGSNITGADFTDVPLRDDQRVYLCKVADGVNATTGNATRDT 140
Query: 232 LGC 234
L C
Sbjct: 141 LLC 143
>pdb|2J8K|A Chain A, Structure Of The Fusion Of Np275 And Np276, Pentapeptide
Repeat Proteins From Nostoc Punctiforme
Length = 201
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 50/147 (34%), Positives = 65/147 (44%), Gaps = 36/147 (24%)
Query: 105 FGSADLRKAVHVKENFR----------RANFTSADMRESDFSGSKFNGAYLEKAVAYKAN 154
F DLR AV N AN A++ +D SG+ NGA L A N
Sbjct: 37 FSIVDLRGAVLENINLSGAILHGAMLDEANLQQANLSRADLSGATLNGADLRGA-----N 91
Query: 155 FTGADLSD----------TLMDRMVLNEANLTNAVLVRTVLTR-----SDLGGAIIEGAD 199
+ ADLSD ++D VLN+ANL A L + +L+ +DL A +E AD
Sbjct: 92 LSKADLSDAILDNAILEGAILDEAVLNQANLKAANLEQAILSHANIREADLSEANLEAAD 151
Query: 200 FSD---AVIDLAQ---KQALCKYANGT 220
S A+ DL Q QA + AN T
Sbjct: 152 LSGADLAIADLHQANLHQAALERANLT 178
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 56/108 (51%), Gaps = 11/108 (10%)
Query: 117 KENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSDTLMDRMVLNEANLT 176
+ +F + A + + SG+ +GA L++A +AN + ADLS LN A+L
Sbjct: 34 ERDFSIVDLRGAVLENINLSGAILHGAMLDEANLQQANLSRADLSGA-----TLNGADLR 88
Query: 177 NAVLVRTVLTRSDLGGAIIEGADFSDAVIDLAQ------KQALCKYAN 218
A L + L+ + L AI+EGA +AV++ A +QA+ +AN
Sbjct: 89 GANLSKADLSDAILDNAILEGAILDEAVLNQANLKAANLEQAILSHAN 136
Score = 36.2 bits (82), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 43/100 (43%), Gaps = 30/100 (30%)
Query: 103 AQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKF-----NGAYLEKAVAYKANFTG 157
A +A+L +A+ N R A+ + A++ +D SG+ + A L +A +AN TG
Sbjct: 120 ANLKAANLEQAILSHANIREADLSEANLEAADLSGADLAIADLHQANLHQAALERANLTG 179
Query: 158 ADLSDTLMDRMVLNEANLTNAVLVRTVLTRSDLGGAIIEG 197
A+L D ++L G I+EG
Sbjct: 180 ANLED-------------------------ANLEGTILEG 194
Score = 34.7 bits (78), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 49/120 (40%), Gaps = 25/120 (20%)
Query: 103 AQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANF------- 155
A ADL A + R AN + AD+ ++ + GA L++AV +AN
Sbjct: 70 ANLSRADLSGATLNGADLRGANLSKADLSDAILDNAILEGAILDEAVLNQANLKAANLEQ 129
Query: 156 ------------------TGADLSDTLMDRMVLNEANLTNAVLVRTVLTRSDLGGAIIEG 197
ADLS + L++ANL A L R LT ++L A +EG
Sbjct: 130 AILSHANIREADLSEANLEAADLSGADLAIADLHQANLHQAALERANLTGANLEDANLEG 189
>pdb|3DU1|X Chain X, The 2.0 Angstrom Resolution Crystal Structure Of Hetl, A
Pentapeptide Repeat Protein Involved In Heterocyst
Differentiation Regulation From The Cyanobacterium
Nostoc Sp. Strain Pcc 7120
Length = 257
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 52/96 (54%), Gaps = 5/96 (5%)
Query: 108 ADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSDTLMDR 167
ADL +A+ + A+ A +RE+D +G+K LE+A KA+ GA+L+ + R
Sbjct: 80 ADLSEAILWGIDLSEADLYRAILREADLTGAKLVKTRLEEANLIKASLCGANLNSANLSR 139
Query: 168 MVLNEANLTNAVLVRTVLTRSDLGGAIIEGADFSDA 203
+L +A+L + RT DLG ++ GAD S A
Sbjct: 140 CLLFQADLRPSSNQRT-----DLGYVLLTGADLSYA 170
Score = 45.4 bits (106), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 53/99 (53%)
Query: 105 FGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSDTL 164
F +L++ + A+ + AD+R++ S F+ L +A +A G DLS+
Sbjct: 37 FQHINLQEIELTNASLTGADLSYADLRQTRLGKSNFSHTCLREADLSEAILWGIDLSEAD 96
Query: 165 MDRMVLNEANLTNAVLVRTVLTRSDLGGAIIEGADFSDA 203
+ R +L EA+LT A LV+T L ++L A + GA+ + A
Sbjct: 97 LYRAILREADLTGAKLVKTRLEEANLIKASLCGANLNSA 135
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 53/106 (50%), Gaps = 8/106 (7%)
Query: 108 ADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANF--------TGAD 159
ADLR + + + + T AD+ +D + + A L+ A +ANF AD
Sbjct: 145 ADLRPSSNQRTDLGYVLLTGADLSYADLRAASLHHANLDGAKLCRANFGRTIQWGNLAAD 204
Query: 160 LSDTLMDRMVLNEANLTNAVLVRTVLTRSDLGGAIIEGADFSDAVI 205
LS + L+ ANL +A+L + L +DL GAI++ A+ A++
Sbjct: 205 LSGASLQGADLSYANLESAILRKANLQGADLTGAILKDAELKGAIM 250
Score = 37.0 bits (84), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 38/127 (29%), Positives = 52/127 (40%), Gaps = 28/127 (22%)
Query: 103 AQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANF------- 155
A ADL A VK AN A + G+ N A L + + ++A+
Sbjct: 100 AILREADLTGAKLVKTRLEEANLIKASL-----CGANLNSANLSRCLLFQADLRPSSNQR 154
Query: 156 --------TGADLSDTLMDRMVLNEANLTNAVLVRTVLTRS--------DLGGAIIEGAD 199
TGADLS + L+ ANL A L R R+ DL GA ++GAD
Sbjct: 155 TDLGYVLLTGADLSYADLRAASLHHANLDGAKLCRANFGRTIQWGNLAADLSGASLQGAD 214
Query: 200 FSDAVID 206
S A ++
Sbjct: 215 LSYANLE 221
Score = 36.2 bits (82), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 40/84 (47%)
Query: 110 LRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSDTLMDRMV 169
LR K NF+ N ++ + +G+ + A L + K+NF+ L + + +
Sbjct: 27 LRHYAAGKRNFQHINLQEIELTNASLTGADLSYADLRQTRLGKSNFSHTCLREADLSEAI 86
Query: 170 LNEANLTNAVLVRTVLTRSDLGGA 193
L +L+ A L R +L +DL GA
Sbjct: 87 LWGIDLSEADLYRAILREADLTGA 110
>pdb|2J8I|A Chain A, Structure Of Np275, A Pentapeptide Repeat Protein From
Nostoc Punctiforme
pdb|2J8I|B Chain B, Structure Of Np275, A Pentapeptide Repeat Protein From
Nostoc Punctiforme
Length = 118
Score = 44.3 bits (103), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 39/75 (52%), Gaps = 5/75 (6%)
Query: 132 ESDFSGSKFNGAYLEKAVAYKANFTGADLSDTLMDRMVLNEANLTNAVLVRTVLTRSDLG 191
E DFS GA LE N +GA L ++D L +ANL+ A L L +DL
Sbjct: 34 ERDFSIVDLRGAVLENI-----NLSGAILHGAMLDEANLQQANLSRADLSGATLNGADLR 88
Query: 192 GAIIEGADFSDAVID 206
GA + AD SDA++D
Sbjct: 89 GANLSKADLSDAILD 103
Score = 42.0 bits (97), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 39/86 (45%), Gaps = 15/86 (17%)
Query: 105 FGSADLRKAVHVKENFR----------RANFTSADMRESDFSGSKFNGAYLEKAVAYKAN 154
F DLR AV N AN A++ +D SG+ NGA L AN
Sbjct: 37 FSIVDLRGAVLENINLSGAILHGAMLDEANLQQANLSRADLSGATLNGADLR-----GAN 91
Query: 155 FTGADLSDTLMDRMVLNEANLTNAVL 180
+ ADLSD ++D +L A L AVL
Sbjct: 92 LSKADLSDAILDNAILEGAILDEAVL 117
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 48/90 (53%), Gaps = 5/90 (5%)
Query: 117 KENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSDTLMDRMVLNEANLT 176
+ +F + A + + SG+ +GA L++A +AN + ADLS LN A+L
Sbjct: 34 ERDFSIVDLRGAVLENINLSGAILHGAMLDEANLQQANLSRADLSGA-----TLNGADLR 88
Query: 177 NAVLVRTVLTRSDLGGAIIEGADFSDAVID 206
A L + L+ + L AI+EGA +AV++
Sbjct: 89 GANLSKADLSDAILDNAILEGAILDEAVLN 118
>pdb|2O6W|A Chain A, Crystal Structure Of A Pentapeptide Repeat Protein (Rfr23)
From The Cyanobacterium Cyanothece 51142
Length = 150
Score = 41.6 bits (96), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 42/83 (50%), Gaps = 5/83 (6%)
Query: 120 FRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSDTLMDRMVLNEANLTNAV 179
RAN ++A++ +SD S LE A+ + N + DL + ++ L ANL NA
Sbjct: 58 LTRANLSNANLYQSDLSS-----IILENAILVETNLSETDLENAILIGANLQGANLENAN 112
Query: 180 LVRTVLTRSDLGGAIIEGADFSD 202
L L ++L GAI+ G + +
Sbjct: 113 LQGANLENANLRGAILTGVNLEE 135
Score = 35.8 bits (81), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 45/101 (44%), Gaps = 18/101 (17%)
Query: 119 NFRRANF--------TSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSDTLMDRMVL 170
N R NF +S+ + + F K L +A AN +DLS +++
Sbjct: 24 NLPRENFGLKYRIPRSSSPLVTTPFGXDKAKPVDLTRANLSNANLYQSDLSSIILE---- 79
Query: 171 NEANLTNAVLVRTVLTRSDLGGAIIEGADFSDAVIDLAQKQ 211
NA+LV T L+ +DL AI+ GA+ A ++ A Q
Sbjct: 80 ------NAILVETNLSETDLENAILIGANLQGANLENANLQ 114
>pdb|3NAW|A Chain A, Crystal Structure Of E. Coli O157:h7 Effector Protein Nlel
pdb|3NAW|B Chain B, Crystal Structure Of E. Coli O157:h7 Effector Protein Nlel
pdb|3NB2|A Chain A, Crystal Structure Of E. Coli O157:h7 Effector Protein Nlel
pdb|3NB2|B Chain B, Crystal Structure Of E. Coli O157:h7 Effector Protein Nlel
pdb|3NB2|C Chain C, Crystal Structure Of E. Coli O157:h7 Effector Protein Nlel
pdb|3NB2|D Chain D, Crystal Structure Of E. Coli O157:h7 Effector Protein Nlel
Length = 613
Score = 35.4 bits (80), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 41/75 (54%), Gaps = 4/75 (5%)
Query: 150 AYKANFTGADLSDTLMDRMVLNEANLTNAVLVRTVLTRSDLGGAIIEGADFSDAVIDLAQ 209
A + N++G DLS + + L+ N + AVL T L SDL A++E F +++++
Sbjct: 29 AEELNYSGCDLSGLSLVGLNLSSVNFSGAVLDDTDLRMSDLSQAVLENCSFKNSILN--- 85
Query: 210 KQALCKYANGTNPIT 224
+ C YAN +N I
Sbjct: 86 ECNFC-YANLSNCII 99
Score = 33.9 bits (76), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 57/139 (41%), Gaps = 18/139 (12%)
Query: 84 ADLNKYEAETRGEFGIGSAAQFGSADLRKAVHVKENFRRANFTSA-----DMRESDFSGS 138
ADL A GE + DL V N NF+ A D+R SD S +
Sbjct: 14 ADLIWLSANRTGEES-AEELNYSGCDLSGLSLVGLNLSSVNFSGAVLDDTDLRMSDLSQA 72
Query: 139 KFNGAYLEKAVAYKANFTGADLSDTLMDRMVLN----EANLTNA-------VLVRTVLTR 187
+ ++ + NF A+LS+ ++ + N +NL NA + +L
Sbjct: 73 VLENCSFKNSILNECNFCYANLSNCIIRALFENSNFSNSNLKNASFKGSSYIQYPPILNE 132
Query: 188 SDLGGA-IIEGADFSDAVI 205
+DL GA II G S A++
Sbjct: 133 ADLTGAIIIPGMVLSGAIL 151
>pdb|3SQV|A Chain A, Crystal Structure Of E. Coli O157:h7 E3 Ubiquitin Ligase,
Nlel, With A Human E2, Ubch7
pdb|3SQV|B Chain B, Crystal Structure Of E. Coli O157:h7 E3 Ubiquitin Ligase,
Nlel, With A Human E2, Ubch7
Length = 616
Score = 35.4 bits (80), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 41/75 (54%), Gaps = 4/75 (5%)
Query: 150 AYKANFTGADLSDTLMDRMVLNEANLTNAVLVRTVLTRSDLGGAIIEGADFSDAVIDLAQ 209
A + N++G DLS + + L+ N + AVL T L SDL A++E F +++++
Sbjct: 32 AEELNYSGCDLSGLSLVGLNLSSVNFSGAVLDDTDLRMSDLSQAVLENCSFKNSILN--- 88
Query: 210 KQALCKYANGTNPIT 224
+ C YAN +N I
Sbjct: 89 ECNFC-YANLSNCII 102
Score = 33.9 bits (76), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 57/139 (41%), Gaps = 18/139 (12%)
Query: 84 ADLNKYEAETRGEFGIGSAAQFGSADLRKAVHVKENFRRANFTSA-----DMRESDFSGS 138
ADL A GE + DL V N NF+ A D+R SD S +
Sbjct: 17 ADLIWLSANRTGEES-AEELNYSGCDLSGLSLVGLNLSSVNFSGAVLDDTDLRMSDLSQA 75
Query: 139 KFNGAYLEKAVAYKANFTGADLSDTLMDRMVLN----EANLTNA-------VLVRTVLTR 187
+ ++ + NF A+LS+ ++ + N +NL NA + +L
Sbjct: 76 VLENCSFKNSILNECNFCYANLSNCIIRALFENSNFSNSNLKNASFKGSSYIQYPPILNE 135
Query: 188 SDLGGA-IIEGADFSDAVI 205
+DL GA II G S A++
Sbjct: 136 ADLTGAIIIPGMVLSGAIL 154
>pdb|2XTY|A Chain A, Structure Of Qnrb1 (R167e-Trypsin Treated), A Plasmid-
Mediated Fluoroquinolone Resistance Protein
pdb|2XTY|B Chain B, Structure Of Qnrb1 (R167e-Trypsin Treated), A Plasmid-
Mediated Fluoroquinolone Resistance Protein
Length = 217
Score = 32.7 bits (73), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 46/116 (39%), Gaps = 15/116 (12%)
Query: 108 ADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYK----------ANFTG 157
AD R A + R F SA + ++ S + F+ LEK ++ A F+G
Sbjct: 97 ADFRGASFMNMITTRTWFCSAYITNTNLSYANFSKVVLEKCELWENRWIGAQVLGATFSG 156
Query: 158 ADLSDTLMDRMVLNEANLTNAVLVRTVLTRSDLGGAIIEGADFSDAVIDLAQKQAL 213
+DLS AN T+ LT S+LG I G D +D Q L
Sbjct: 157 SDLSGGEFSTFDWEAANFTHC-----DLTNSELGDLDIRGVDLQGVKLDNYQASLL 207
Score = 30.0 bits (66), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 41/98 (41%), Gaps = 15/98 (15%)
Query: 119 NFRRAN-----FTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSDTLMDRMVLNEA 173
NF RA F S D+ +DF S G + A A+F GA + + R A
Sbjct: 58 NFSRAMLKDAIFKSCDLSMADFRNSSALGIEIRHCRAQGADFRGASFMNMITTRTWFCSA 117
Query: 174 NLTN-----AVLVRTVLTRSDLG-----GAIIEGADFS 201
+TN A + VL + +L GA + GA FS
Sbjct: 118 YITNTNLSYANFSKVVLEKCELWENRWIGAQVLGATFS 155
Score = 28.5 bits (62), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 28/62 (45%), Gaps = 6/62 (9%)
Query: 138 SKFNGAYLEKAVAYKANFTGADLSDT------LMDRMVLNEANLTNAVLVRTVLTRSDLG 191
++F G +E + + +F+GADLS T DR N + A+L + DL
Sbjct: 16 NRFTGEKIENSTFFNCDFSGADLSGTEFIGCQFYDRESQKGCNFSRAMLKDAIFKSCDLS 75
Query: 192 GA 193
A
Sbjct: 76 MA 77
>pdb|2XTW|A Chain A, Structure Of Qnrb1 (Full Length), A Plasmid-Mediated
Fluoroquinolone Resistance Protein
pdb|2XTW|B Chain B, Structure Of Qnrb1 (Full Length), A Plasmid-Mediated
Fluoroquinolone Resistance Protein
pdb|2XTW|C Chain C, Structure Of Qnrb1 (Full Length), A Plasmid-Mediated
Fluoroquinolone Resistance Protein
pdb|2XTW|D Chain D, Structure Of Qnrb1 (Full Length), A Plasmid-Mediated
Fluoroquinolone Resistance Protein
Length = 217
Score = 32.7 bits (73), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 46/116 (39%), Gaps = 15/116 (12%)
Query: 108 ADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYK----------ANFTG 157
AD R A + R F SA + ++ S + F+ LEK ++ A F+G
Sbjct: 97 ADFRGASFMNMITTRTWFCSAYITNTNLSYANFSKVVLEKCELWENRWIGAQVLGATFSG 156
Query: 158 ADLSDTLMDRMVLNEANLTNAVLVRTVLTRSDLGGAIIEGADFSDAVIDLAQKQAL 213
+DLS AN T+ LT S+LG I G D +D Q L
Sbjct: 157 SDLSGGEFSTFDWRAANFTHC-----DLTNSELGDLDIRGVDLQGVKLDNYQASLL 207
Score = 30.0 bits (66), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 41/98 (41%), Gaps = 15/98 (15%)
Query: 119 NFRRAN-----FTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSDTLMDRMVLNEA 173
NF RA F S D+ +DF S G + A A+F GA + + R A
Sbjct: 58 NFSRAMLKDAIFKSCDLSMADFRNSSALGIEIRHCRAQGADFRGASFMNMITTRTWFCSA 117
Query: 174 NLTN-----AVLVRTVLTRSDLG-----GAIIEGADFS 201
+TN A + VL + +L GA + GA FS
Sbjct: 118 YITNTNLSYANFSKVVLEKCELWENRWIGAQVLGATFS 155
Score = 28.5 bits (62), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 28/62 (45%), Gaps = 6/62 (9%)
Query: 138 SKFNGAYLEKAVAYKANFTGADLSDT------LMDRMVLNEANLTNAVLVRTVLTRSDLG 191
++F G +E + + +F+GADLS T DR N + A+L + DL
Sbjct: 16 NRFTGEKIENSTFFNCDFSGADLSGTEFIGCQFYDRESQKGCNFSRAMLKDAIFKSCDLS 75
Query: 192 GA 193
A
Sbjct: 76 MA 77
>pdb|3PSS|A Chain A, Crystal Structure Of Ahqnr, The Qnr Protein From Aeromonas
Hydrophila (P21 Crystal Form)
pdb|3PSS|B Chain B, Crystal Structure Of Ahqnr, The Qnr Protein From Aeromonas
Hydrophila (P21 Crystal Form)
Length = 216
Score = 32.3 bits (72), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 43/95 (45%), Gaps = 10/95 (10%)
Query: 119 NFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSDTLMDRMVLNEANLTNA 178
NF ANF + + + SG+++ GA L + A+ G+DLS + ++ NL
Sbjct: 122 NFSYANFEGCLLEQCELSGNRWQGANL-----FGASLAGSDLSGSEFGQIDWASVNLQGC 176
Query: 179 VLVRTVLTRSDLGGAIIEGADFSDAVIDLAQKQAL 213
L + DL G + + I+ Q+QAL
Sbjct: 177 -----DLRQCDLPGLDLRRVNLDGVQINEDQQQAL 206
Score = 28.1 bits (61), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 38/87 (43%), Gaps = 5/87 (5%)
Query: 119 NFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSDTLMDRMVLNEANLTN- 177
+ R A+F D+ +D S S+ G L A NF+ A ++ + EA+LT
Sbjct: 62 DLREASFLRCDLTMADCSRSQCLGLELRDCQALGINFSRASFANQITVXSYFCEAHLTGN 121
Query: 178 ----AVLVRTVLTRSDLGGAIIEGADF 200
A +L + +L G +GA+
Sbjct: 122 NFSYANFEGCLLEQCELSGNRWQGANL 148
>pdb|3PSZ|A Chain A, Crystal Structure Of Ahqnr, The Qnr Protein From Aeromonas
Hydrophila (P21212 Crystal Form)
pdb|3PSZ|B Chain B, Crystal Structure Of Ahqnr, The Qnr Protein From Aeromonas
Hydrophila (P21212 Crystal Form)
Length = 216
Score = 32.0 bits (71), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 43/95 (45%), Gaps = 10/95 (10%)
Query: 119 NFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSDTLMDRMVLNEANLTNA 178
NF ANF + + + SG+++ GA L + A+ G+DLS + ++ NL
Sbjct: 122 NFSYANFEGCLLEQCELSGNRWQGANL-----FGASLAGSDLSGSEFGQIDWASVNLQGC 176
Query: 179 VLVRTVLTRSDLGGAIIEGADFSDAVIDLAQKQAL 213
L + DL G + + I+ Q+QAL
Sbjct: 177 -----DLRQCDLPGLDLRRVNLDGVQINEDQQQAL 206
Score = 29.3 bits (64), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 39/87 (44%), Gaps = 5/87 (5%)
Query: 119 NFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSDTLMDRMVLNEANLTN- 177
+ R A+F D+ +D S S+ G L A NF+ A ++ + + EA+LT
Sbjct: 62 DLREASFLRCDLTMADCSRSQCLGLELRDCQALGINFSRASFANQITVKSYFXEAHLTGN 121
Query: 178 ----AVLVRTVLTRSDLGGAIIEGADF 200
A +L + +L G +GA+
Sbjct: 122 NFSYANFEGCLLEQCELSGNRWQGANL 148
>pdb|2XTX|A Chain A, Structure Of Qnrb1 (M102r-Trypsin Treated), A Plasmid-
Mediated Fluoroquinolone Resistance Protein
pdb|2XTX|B Chain B, Structure Of Qnrb1 (M102r-Trypsin Treated), A Plasmid-
Mediated Fluoroquinolone Resistance Protein
Length = 217
Score = 31.2 bits (69), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 45/116 (38%), Gaps = 15/116 (12%)
Query: 108 ADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYK----------ANFTG 157
AD R A R F SA + ++ S + F+ LEK ++ A F+G
Sbjct: 97 ADFRGASFRNMITTRTWFCSAYITNTNLSYANFSKVVLEKCELWENRWIGAQVLGATFSG 156
Query: 158 ADLSDTLMDRMVLNEANLTNAVLVRTVLTRSDLGGAIIEGADFSDAVIDLAQKQAL 213
+DLS AN T+ LT S+LG I G D +D Q L
Sbjct: 157 SDLSGGEFSTFDWRAANFTHC-----DLTNSELGDLDIRGVDLQGVKLDNYQASLL 207
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 41/98 (41%), Gaps = 15/98 (15%)
Query: 119 NFRRAN-----FTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSDTLMDRMVLNEA 173
NF RA F S D+ +DF S G + A A+F GA + + R A
Sbjct: 58 NFSRAMLKDAIFKSCDLSMADFRNSSALGIEIRHCRAQGADFRGASFRNMITTRTWFCSA 117
Query: 174 NLTN-----AVLVRTVLTRSDLG-----GAIIEGADFS 201
+TN A + VL + +L GA + GA FS
Sbjct: 118 YITNTNLSYANFSKVVLEKCELWENRWIGAQVLGATFS 155
Score = 28.5 bits (62), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 28/62 (45%), Gaps = 6/62 (9%)
Query: 138 SKFNGAYLEKAVAYKANFTGADLSDT------LMDRMVLNEANLTNAVLVRTVLTRSDLG 191
++F G +E + + +F+GADLS T DR N + A+L + DL
Sbjct: 16 NRFTGEKIENSTFFNCDFSGADLSGTEFIGCQFYDRESQKGCNFSRAMLKDAIFKSCDLS 75
Query: 192 GA 193
A
Sbjct: 76 MA 77
>pdb|2QYU|A Chain A, Crystal Structure Of Salmonella Effector Protein Sopa
Length = 627
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 17/84 (20%), Positives = 38/84 (45%), Gaps = 3/84 (3%)
Query: 119 NFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSDTLMDRMVL--NEANLT 176
NF + FT +D+ F +F + L V F+ +D+++ + + + +
Sbjct: 72 NFSNSKFTYSDISHLHFDECRFTYSTLSDVVCSNTKFSNSDMNEVFLQYSITTQQQPSFI 131
Query: 177 NAVLVRTVL-TRSDLGGAIIEGAD 199
+ L T++ +++L G I+ D
Sbjct: 132 DTTLKNTLIRHKANLSGVILNEPD 155
>pdb|3SY2|A Chain A, Crystal Structure Of The Salmonella E3 Ubiquitin Ligase
Sopa In Complex With The Human E2 Ubch7
pdb|3SY2|B Chain B, Crystal Structure Of The Salmonella E3 Ubiquitin Ligase
Sopa In Complex With The Human E2 Ubch7
Length = 621
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 17/84 (20%), Positives = 38/84 (45%), Gaps = 3/84 (3%)
Query: 119 NFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSDTLMDRMVL--NEANLT 176
NF + FT +D+ F +F + L V F+ +D+++ + + + +
Sbjct: 66 NFSNSKFTYSDISHLHFDECRFTYSTLSDVVCSNTKFSNSDMNEVFLQYSITTQQQPSFI 125
Query: 177 NAVLVRTVL-TRSDLGGAIIEGAD 199
+ L T++ +++L G I+ D
Sbjct: 126 DTTLKNTLIRHKANLSGVILNEPD 149
>pdb|2BM4|A Chain A, The Structure Of Mfpa (Rv3361c, C2 Crystal Form). The
Pentapeptide Repeat Protein From Mycobacterium
Tuberculosis Folds As A Right-Handed Quadrilateral Beta-
Helix.
pdb|2BM4|B Chain B, The Structure Of Mfpa (Rv3361c, C2 Crystal Form). The
Pentapeptide Repeat Protein From Mycobacterium
Tuberculosis Folds As A Right-Handed Quadrilateral Beta-
Helix.
pdb|2BM5|A Chain A, The Structure Of Mfpa (Rv3361c, P21 Crystal Form). The
Pentapeptide Repeat Protein From Mycobacterium
Tuberculosis Folds As A Right-Handed Quadrilateral Beta-
Helix.
pdb|2BM5|B Chain B, The Structure Of Mfpa (Rv3361c, P21 Crystal Form). The
Pentapeptide Repeat Protein From Mycobacterium
Tuberculosis Folds As A Right-Handed Quadrilateral Beta-
Helix.
pdb|2BM6|A Chain A, The Structure Of Mfpa (Rv3361c, C2221 Crystal Form). The
Pentapeptide Repeat Protein From Mycobacterium
Tuberculosis Folds As A Right-Handed Quadrilateral Beta-
Helix.
pdb|2BM7|A Chain A, The Structure Of Mfpa (Rv3361c, P3221 Crystal Form). The
Pentapeptide Repeat Protein From Mycobacterium
Tuberculosis Folds As A Right-Handed Quadrilateral Beta-
Helix.
pdb|2BM7|B Chain B, The Structure Of Mfpa (Rv3361c, P3221 Crystal Form). The
Pentapeptide Repeat Protein From Mycobacterium
Tuberculosis Folds As A Right-Handed Quadrilateral Beta-
Helix.
pdb|2BM7|C Chain C, The Structure Of Mfpa (Rv3361c, P3221 Crystal Form). The
Pentapeptide Repeat Protein From Mycobacterium
Tuberculosis Folds As A Right-Handed Quadrilateral Beta-
Helix
Length = 186
Score = 29.6 bits (65), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 49/127 (38%), Gaps = 9/127 (7%)
Query: 85 DLNKYEAETRGEFGIGSAAQFGSADLRKAVHVKENFRRANFTSADMRESDFS-----GSK 139
DL++ E R F S F +L ++ H FR F + S F+ GS
Sbjct: 21 DLSRLHTE-RAMF---SECDFSGVNLAESQHRGSAFRNCTFERTTLWHSTFAQCSMLGSV 76
Query: 140 FNGAYLEKAVAYKANFTGADLSDTLMDRMVLNEANLTNAVLVRTVLTRSDLGGAIIEGAD 199
F L +FT A L + + L L LV T L + L GA + GA
Sbjct: 77 FVACRLRPLTLDDVDFTLAVLGGNDLRGLNLTGCRLRETSLVDTDLRKCVLRGADLSGAR 136
Query: 200 FSDAVID 206
+ A +D
Sbjct: 137 TTGARLD 143
>pdb|2QZA|A Chain A, Crystal Structure Of Salmonella Effector Protein Sopa
pdb|2QZA|B Chain B, Crystal Structure Of Salmonella Effector Protein Sopa
Length = 618
Score = 29.3 bits (64), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 17/84 (20%), Positives = 37/84 (44%), Gaps = 3/84 (3%)
Query: 119 NFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSDTLMDRMVL--NEANLT 176
NF + FT +D+ F +F + L V F+ +D ++ + + + +
Sbjct: 63 NFSNSKFTYSDISHLHFDECRFTYSTLSDVVCSNTKFSNSDXNEVFLQYSITTQQQPSFI 122
Query: 177 NAVLVRTVL-TRSDLGGAIIEGAD 199
+ L T++ +++L G I+ D
Sbjct: 123 DTTLKNTLIRHKANLSGVILNEPD 146
>pdb|3OF4|A Chain A, Crystal Structure Of A FmnFAD- And Nad(P)h-Dependent
Nitroreductase (Nfnb, Il2077) From Idiomarina Loihiensis
L2tr At 1.90 A Resolution
pdb|3OF4|B Chain B, Crystal Structure Of A FmnFAD- And Nad(P)h-Dependent
Nitroreductase (Nfnb, Il2077) From Idiomarina Loihiensis
L2tr At 1.90 A Resolution
pdb|3OF4|C Chain C, Crystal Structure Of A FmnFAD- And Nad(P)h-Dependent
Nitroreductase (Nfnb, Il2077) From Idiomarina Loihiensis
L2tr At 1.90 A Resolution
Length = 209
Score = 28.9 bits (63), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 25/38 (65%), Gaps = 4/38 (10%)
Query: 142 GAYLEKAVAYK---ANFTGADLSDTLMDRMVLNEANLT 176
G YLEK ++ A+F+GA ++D ++D++ LN LT
Sbjct: 1 GXYLEKLQQWRYATADFSGAHITDDVLDKL-LNTTRLT 37
>pdb|4G56|B Chain B, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
pdb|4G56|D Chain D, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
Length = 357
Score = 28.5 bits (62), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 38/73 (52%), Gaps = 2/73 (2%)
Query: 146 EKAVAYKANFTGADLSDTL-MDRMVLNE-ANLTNAVLVRTVLTRSDLGGAIIEGADFSDA 203
EK + ++ +L + L + +++N+ A + +V+T+ SD A+ G DFS
Sbjct: 105 EKGILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVK 164
Query: 204 VIDLAQKQALCKY 216
V DL+QK L Y
Sbjct: 165 VWDLSQKAVLKSY 177
>pdb|2XT4|A Chain A, Structure Of The Pentapeptide Repeat Protein Albg, A
Resistance Factor For The Topoisomerase Poison
Albicidin.
pdb|2XT4|B Chain B, Structure Of The Pentapeptide Repeat Protein Albg, A
Resistance Factor For The Topoisomerase Poison Albicidin
Length = 194
Score = 28.5 bits (62), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 25/107 (23%), Positives = 44/107 (41%), Gaps = 5/107 (4%)
Query: 103 AQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSD 162
+F +L + +F F M +++ ++ E+ + + F G L+
Sbjct: 54 CEFVDCNLSLISIPQTSFMEVRFVDCKMLGVNWTSAQAGALSFERCILNDSLFYGLYLAG 113
Query: 163 TLMDRMVLNEANLTNAVLVRTVLTRSDLGGAI-----IEGADFSDAV 204
M +++AN T A T+SDL G+ + GA F DAV
Sbjct: 114 VKMVECRIHDANFTEADCEDADFTQSDLKGSTFHNTKLTGASFIDAV 160
>pdb|2QFV|A Chain A, Crystal Structure Of Saccharomyces Cerevesiae
Mitochondrial Nadp(+)-Dependent Isocitrate Dehydrogenase
In Complex With Nadp(+)
pdb|2QFV|B Chain B, Crystal Structure Of Saccharomyces Cerevesiae
Mitochondrial Nadp(+)-Dependent Isocitrate Dehydrogenase
In Complex With Nadp(+)
pdb|2QFV|C Chain C, Crystal Structure Of Saccharomyces Cerevesiae
Mitochondrial Nadp(+)-Dependent Isocitrate Dehydrogenase
In Complex With Nadp(+)
pdb|2QFV|D Chain D, Crystal Structure Of Saccharomyces Cerevesiae
Mitochondrial Nadp(+)-Dependent Isocitrate Dehydrogenase
In Complex With Nadp(+)
pdb|2QFW|A Chain A, Crystal Structure Of Saccharomyces Cerevesiae
Mitochondrial Nadp(+)- Dependent Isocitrate
Dehydrogenase In Complex With Isocitrate
pdb|2QFW|B Chain B, Crystal Structure Of Saccharomyces Cerevesiae
Mitochondrial Nadp(+)- Dependent Isocitrate
Dehydrogenase In Complex With Isocitrate
pdb|2QFW|C Chain C, Crystal Structure Of Saccharomyces Cerevesiae
Mitochondrial Nadp(+)- Dependent Isocitrate
Dehydrogenase In Complex With Isocitrate
pdb|2QFW|D Chain D, Crystal Structure Of Saccharomyces Cerevesiae
Mitochondrial Nadp(+)- Dependent Isocitrate
Dehydrogenase In Complex With Isocitrate
pdb|2QFW|E Chain E, Crystal Structure Of Saccharomyces Cerevesiae
Mitochondrial Nadp(+)- Dependent Isocitrate
Dehydrogenase In Complex With Isocitrate
pdb|2QFW|F Chain F, Crystal Structure Of Saccharomyces Cerevesiae
Mitochondrial Nadp(+)- Dependent Isocitrate
Dehydrogenase In Complex With Isocitrate
pdb|2QFX|A Chain A, Crystal Structure Of Saccharomyces Cerevesiae
Mitochondrial Nadp(+)- Dependent Isocitrate
Dehydrogenase In Complex With Nadph, A- Ketoglutarate
And Ca(2+)
pdb|2QFX|B Chain B, Crystal Structure Of Saccharomyces Cerevesiae
Mitochondrial Nadp(+)- Dependent Isocitrate
Dehydrogenase In Complex With Nadph, A- Ketoglutarate
And Ca(2+)
pdb|2QFX|C Chain C, Crystal Structure Of Saccharomyces Cerevesiae
Mitochondrial Nadp(+)- Dependent Isocitrate
Dehydrogenase In Complex With Nadph, A- Ketoglutarate
And Ca(2+)
pdb|2QFX|D Chain D, Crystal Structure Of Saccharomyces Cerevesiae
Mitochondrial Nadp(+)- Dependent Isocitrate
Dehydrogenase In Complex With Nadph, A- Ketoglutarate
And Ca(2+)
pdb|2QFX|E Chain E, Crystal Structure Of Saccharomyces Cerevesiae
Mitochondrial Nadp(+)- Dependent Isocitrate
Dehydrogenase In Complex With Nadph, A- Ketoglutarate
And Ca(2+)
pdb|2QFX|F Chain F, Crystal Structure Of Saccharomyces Cerevesiae
Mitochondrial Nadp(+)- Dependent Isocitrate
Dehydrogenase In Complex With Nadph, A- Ketoglutarate
And Ca(2+)
pdb|2QFY|A Chain A, Crystal Structure Of Saccharomyces Cerevesiae
Mitochondrial Nadp(+)- Dependent Isocitrate
Dehydrogenase In Complex With A-ketoglutarate
pdb|2QFY|B Chain B, Crystal Structure Of Saccharomyces Cerevesiae
Mitochondrial Nadp(+)- Dependent Isocitrate
Dehydrogenase In Complex With A-ketoglutarate
pdb|2QFY|C Chain C, Crystal Structure Of Saccharomyces Cerevesiae
Mitochondrial Nadp(+)- Dependent Isocitrate
Dehydrogenase In Complex With A-ketoglutarate
pdb|2QFY|D Chain D, Crystal Structure Of Saccharomyces Cerevesiae
Mitochondrial Nadp(+)- Dependent Isocitrate
Dehydrogenase In Complex With A-ketoglutarate
pdb|2QFY|E Chain E, Crystal Structure Of Saccharomyces Cerevesiae
Mitochondrial Nadp(+)- Dependent Isocitrate
Dehydrogenase In Complex With A-ketoglutarate
pdb|2QFY|F Chain F, Crystal Structure Of Saccharomyces Cerevesiae
Mitochondrial Nadp(+)- Dependent Isocitrate
Dehydrogenase In Complex With A-ketoglutarate
Length = 427
Score = 28.5 bits (62), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 8/45 (17%)
Query: 206 DLAQKQALCKYANGTNPIT-------GVSTRK-SLGCGNSRRNAY 242
+L ALCK+AN T G+ T+ +L CGN+ R+AY
Sbjct: 361 ELDNTPALCKFANILESATLNTVQQDGIMTKDLALACGNNERSAY 405
>pdb|2XT2|A Chain A, Structure Of The Pentapeptide Repeat Protein Albg, A
Resistance Factor For The Topoisomerase Poison
Albicidin.
pdb|2XT2|B Chain B, Structure Of The Pentapeptide Repeat Protein Albg, A
Resistance Factor For The Topoisomerase Poison Albicidin
Length = 200
Score = 28.1 bits (61), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 26/113 (23%), Positives = 49/113 (43%), Gaps = 11/113 (9%)
Query: 103 AQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYK------ANFT 156
+F +L + +F F M +++ +++ +E A++++ + F
Sbjct: 54 CEFVDCNLSLISIPQTSFMEVRFVDCKMLGVNWTSAQWPSVKMEGALSFERCILNDSLFY 113
Query: 157 GADLSDTLMDRMVLNEANLTNAVLVRTVLTRSDLGGAI-----IEGADFSDAV 204
G L+ M +++AN T A T+SDL G+ + GA F DAV
Sbjct: 114 GLYLAGVKMVECRIHDANFTEADCEDADFTQSDLKGSTFHNTKLTGASFIDAV 166
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.131 0.384
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,795,943
Number of Sequences: 62578
Number of extensions: 230263
Number of successful extensions: 605
Number of sequences better than 100.0: 23
Number of HSP's better than 100.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 413
Number of HSP's gapped (non-prelim): 92
length of query: 274
length of database: 14,973,337
effective HSP length: 97
effective length of query: 177
effective length of database: 8,903,271
effective search space: 1575878967
effective search space used: 1575878967
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (24.3 bits)