Query 023997
Match_columns 274
No_of_seqs 361 out of 1500
Neff 6.5
Searched_HMMs 29240
Date Mon Mar 25 16:25:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023997.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023997hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2f3l_A RFR-domain; beta helix, 100.0 6.1E-30 2.1E-34 220.2 8.9 136 100-235 49-184 (184)
2 3n90_A P15, thylakoid lumenal 99.9 3.8E-27 1.3E-31 196.3 7.9 139 99-237 7-146 (152)
3 2o6w_A Repeat five residue (RF 99.8 1.2E-21 4E-26 163.0 3.9 108 100-207 15-135 (150)
4 2o6w_A Repeat five residue (RF 99.8 1.4E-21 4.9E-26 162.5 2.9 96 114-209 47-142 (150)
5 3n90_A P15, thylakoid lumenal 99.8 2.7E-20 9.1E-25 154.8 2.6 110 101-210 4-114 (152)
6 2bm5_A MFPA, RV3361C, pentapep 99.8 8.6E-20 3E-24 155.8 5.1 48 163-210 110-157 (186)
7 2w7z_A EFSQNR, pentapeptide re 99.8 1.5E-19 5.2E-24 157.3 5.4 17 197-213 189-205 (214)
8 2xty_A QNRB1; cell cycle, pent 99.8 4.1E-19 1.4E-23 154.8 7.4 19 195-213 189-207 (217)
9 2f3l_A RFR-domain; beta helix, 99.8 1.6E-19 5.4E-24 155.1 3.7 110 103-212 47-156 (184)
10 3pss_A QNR; pentapeptide repea 99.7 7E-19 2.4E-23 152.3 6.1 36 180-215 173-208 (216)
11 2xt2_A ALBG, MCBG-like protein 99.7 8.2E-19 2.8E-23 150.2 5.5 61 104-164 30-90 (200)
12 2xt2_A ALBG, MCBG-like protein 99.7 6E-19 2E-23 151.0 4.1 105 101-205 42-157 (200)
13 3nb2_A Secreted effector prote 99.7 1.6E-18 5.6E-23 172.3 4.3 106 100-205 29-140 (613)
14 3nb2_A Secreted effector prote 99.7 2.8E-18 9.6E-23 170.6 4.3 111 99-209 33-155 (613)
15 2qyu_A Secreted effector prote 99.6 8.9E-17 3E-21 158.6 4.9 109 101-209 38-155 (627)
16 2qyu_A Secreted effector prote 99.6 1.2E-15 4.1E-20 150.5 5.7 101 99-199 41-155 (627)
No 1
>2f3l_A RFR-domain; beta helix, unknown function; 2.11A {Cyanothece SP} SCOP: b.80.8.1 PDB: 2g0y_A
Probab=99.96 E-value=6.1e-30 Score=220.21 Aligned_cols=136 Identities=39% Similarity=0.591 Sum_probs=130.2
Q ss_pred CCCceecCccccCccccCceecCceeccceecCceecCccccccccccceeecceecccccccccccceeecceeeccce
Q 023997 100 GSAAQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSDTLMDRMVLNEANLTNAV 179 (274)
Q Consensus 100 lsg~~f~~~dL~~~~F~~~dl~~a~f~~a~l~~a~fs~a~L~~a~f~~a~f~~anf~gadf~~a~l~~a~f~~adL~~A~ 179 (274)
+.+.+|++++|++++|++++|++++|.+++|.+++|++++|.+++|.+++|.+++|.+++|+++.|.+++|.+|+|++++
T Consensus 49 ~~~~~f~~~~l~~~df~~~~L~~~~f~~~~l~~a~f~~a~L~~a~f~~a~l~~a~l~~a~L~~a~l~~a~f~~a~L~~a~ 128 (184)
T 2f3l_A 49 GSSASYEDVKLIGEDFSGKSLTYAQFTNADLTDSNFSEADLRGAVFNGSALIGADLHGADLTNGLAYLTSFKGADLTNAV 128 (184)
T ss_dssp ---CEEESCBCTTCBCTTCBCTTCEEESCBCTTCBCTTCBCTTCEEESCBCTTCBCTTCBCTTCEEEEEECTTCBCTTCB
T ss_pred ccCccccCCeECCCcCCCCCcCCCEeccCccccCCcCCCCCcEeEEeeeccCCCeEEEeecccceecCcEeCccEeCCCE
Confidence 56789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecccccccccccCcEEeCCcccCceeCHHHHHHHhhhccCCCCCCCcchhhhcCCC
Q 023997 180 LVRTVLTRSDLGGAIIEGADFSDAVIDLAQKQALCKYANGTNPITGVSTRKSLGCG 235 (274)
Q Consensus 180 l~~a~l~~a~f~~a~l~gadf~~A~L~~~q~~~lc~~a~g~np~tg~~tr~sLgc~ 235 (274)
|.+++|.+++|.+++|++++|++|+|++.+++.+|.+++|+||+||++||++|||+
T Consensus 129 l~~a~l~~a~f~~a~L~gadf~~a~l~~~~l~~~c~~~~g~n~~t~~~tr~sl~c~ 184 (184)
T 2f3l_A 129 LTEAIMMRTKFDDAKITGADFSLAVLDVYEVDKLCDRADGVNPKTGVSTRESLRCQ 184 (184)
T ss_dssp CTTCEEEEEECTTCBCTTCBCTTCEECHHHHHHHHTTCCCBCTTTCCBHHHHTTC-
T ss_pred eeCCEECCCEEeCCEecCCEecCCCCCcChHHHhhccccCCCcccccchhhhcCCC
Confidence 99999999999999999999999999999999999999999999999999999996
No 2
>3n90_A P15, thylakoid lumenal 15 kDa protein 1, chloroplastic; right-handed quadrilateral beta helix; 1.70A {Arabidopsis thaliana} SCOP: b.80.8.0
Probab=99.94 E-value=3.8e-27 Score=196.31 Aligned_cols=139 Identities=29% Similarity=0.395 Sum_probs=126.6
Q ss_pred cCCCceecCccccCccccCceecCceeccceecCceecCccccccccccceeecceecccccccccccceeecceeeccc
Q 023997 99 IGSAAQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSDTLMDRMVLNEANLTNA 178 (274)
Q Consensus 99 ~lsg~~f~~~dL~~~~F~~~dl~~a~f~~a~l~~a~fs~a~L~~a~f~~a~f~~anf~gadf~~a~l~~a~f~~adL~~A 178 (274)
.+.+++|++++|++++|++++|.+++|.+++|.+++|.+++|.+++|.+++|.+++|.+++|++++|.+++|.+++|.++
T Consensus 7 ~~~~~~~~~~~l~~~~f~~~~l~~~~f~~~~l~~a~f~~a~l~~a~f~~a~l~~a~f~~a~l~~a~f~~a~l~~a~f~~a 86 (152)
T 3n90_A 7 PYGQGVTRGQDLSGKDFSGQTLIRQDFKTSILRQANFKGAKLLGASFFDADLTGADLSEADLRGADFSLANVTKVNLTNA 86 (152)
T ss_dssp CCCHHHHTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTC
T ss_pred cccCceEcCCCccCCcCCCCCcCcCccCCCeeCCCEeCCCCCCCCCccccCcCCCEeCCCCcCCCCCCCCCcCCCCcCCC
Confidence 35677888888888888888888888899999999999999999999999999999999999999999999999999999
Q ss_pred eeccccccc-ccccCcEEeCCcccCceeCHHHHHHHhhhccCCCCCCCcchhhhcCCCCC
Q 023997 179 VLVRTVLTR-SDLGGAIIEGADFSDAVIDLAQKQALCKYANGTNPITGVSTRKSLGCGNS 237 (274)
Q Consensus 179 ~l~~a~l~~-a~f~~a~l~gadf~~A~L~~~q~~~lc~~a~g~np~tg~~tr~sLgc~~~ 237 (274)
+|.++.|.+ ++|.+++|++++|+++.|.+.+++++|.+++|+||.+|..||++|.|...
T Consensus 87 ~l~~a~~~g~~~~~~a~l~~a~~~~a~l~~~~l~~lc~~~~g~n~~~~~~tr~~~~~~~~ 146 (152)
T 3n90_A 87 NLEGATMMGNTSFKGSNITGADFTDVPLRDDQRVYLCKVADGVNATTGNATRDTLLCNLE 146 (152)
T ss_dssp BCTTCBCCSSCBCTTCBCTTCBCTTCCCCHHHHHHHHHHCCCBCTTTCCBHHHHTTTTC-
T ss_pred CCCCCEEcCCceECCCEecCCEecCCccCcHHHHHHhhhhhCcCCccccchhhhhhhhhh
Confidence 999999995 99999999999999999999999999999999999999999999977653
No 3
>2o6w_A Repeat five residue (RFR) protein or pentapeptide repeat protein; beta helix, unknown function; 2.40A {Cyanothece}
Probab=99.83 E-value=1.2e-21 Score=163.01 Aligned_cols=108 Identities=19% Similarity=0.237 Sum_probs=51.7
Q ss_pred CCCceecCccccCccccCc-------------eecCceeccceecCceecCccccccccccceeecceeccccccccccc
Q 023997 100 GSAAQFGSADLRKAVHVKE-------------NFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSDTLMD 166 (274)
Q Consensus 100 lsg~~f~~~dL~~~~F~~~-------------dl~~a~f~~a~l~~a~fs~a~L~~a~f~~a~f~~anf~gadf~~a~l~ 166 (274)
+.+|+|++++|++++|+++ +|.+++|.+++|.+++|++++|.+++|.+++|.+|+|.+++|++++|.
T Consensus 15 ~~~~~l~~~dL~~~~l~~~~~~~~~~~~l~~~~f~~a~l~~~~l~~a~l~~a~l~~a~l~~a~~~~a~l~~a~l~~a~l~ 94 (150)
T 2o6w_A 15 CVGCNLEGVNLPRENFGLKYRIPRSSSPLVTTPFGMDKAKPVDLTRANLSNANLYQSDLSSIILENAILVETNLSETDLE 94 (150)
T ss_dssp CTTCBCTTCBCTTCBCSSSCBCC---CTTCCBSTTCTTCCCCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCT
T ss_pred cCCcccCCCCCCCCCcccCcccccccCccccCccCCCCcCCCEeCCCCCCCCCccCCCCCCCCcCCCCCCCCEecCCCCC
Confidence 4455555555555555555 444444444444444444444444444444444444444444444444
Q ss_pred ceeecceeeccceecccccccccccCcEEeCCcccCceeCH
Q 023997 167 RMVLNEANLTNAVLVRTVLTRSDLGGAIIEGADFSDAVIDL 207 (274)
Q Consensus 167 ~a~f~~adL~~A~l~~a~l~~a~f~~a~l~gadf~~A~L~~ 207 (274)
+++|.+|+|++++|.+++|++++|.+++|++++|++++|.+
T Consensus 95 ~a~~~~a~L~~a~l~~a~L~~a~~~~a~L~~a~l~~a~l~~ 135 (150)
T 2o6w_A 95 NAILIGANLQGANLENANLQGANLENANLRGAILTGVNLEE 135 (150)
T ss_dssp TCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTT
T ss_pred CCEecCCCCCCCCCCCceecccEECCCCcCcCCccCCCCCC
Confidence 44444444444444444444444444444444444444443
No 4
>2o6w_A Repeat five residue (RFR) protein or pentapeptide repeat protein; beta helix, unknown function; 2.40A {Cyanothece}
Probab=99.82 E-value=1.4e-21 Score=162.48 Aligned_cols=96 Identities=23% Similarity=0.364 Sum_probs=64.4
Q ss_pred cccCceecCceeccceecCceecCccccccccccceeecceecccccccccccceeecceeeccceecccccccccccCc
Q 023997 114 VHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSDTLMDRMVLNEANLTNAVLVRTVLTRSDLGGA 193 (274)
Q Consensus 114 ~F~~~dl~~a~f~~a~l~~a~fs~a~L~~a~f~~a~f~~anf~gadf~~a~l~~a~f~~adL~~A~l~~a~l~~a~f~~a 193 (274)
+|.+++|.+++|.+++|++++|.+++|.+++|.+++|.+++|.+++|++++|.+++|.+++|++|+|.+++|.+++|.++
T Consensus 47 ~f~~a~l~~~~l~~a~l~~a~l~~a~l~~a~~~~a~l~~a~l~~a~l~~a~~~~a~L~~a~l~~a~L~~a~~~~a~L~~a 126 (150)
T 2o6w_A 47 PFGMDKAKPVDLTRANLSNANLYQSDLSSIILENAILVETNLSETDLENAILIGANLQGANLENANLQGANLENANLRGA 126 (150)
T ss_dssp STTCTTCCCCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTC
T ss_pred ccCCCCcCCCEeCCCCCCCCCccCCCCCCCCcCCCCCCCCEecCCCCCCCEecCCCCCCCCCCCceecccEECCCCcCcC
Confidence 77777777777777777777777777777777766666666666666666666666666666666666666666666666
Q ss_pred EEeCCcccCceeCHHH
Q 023997 194 IIEGADFSDAVIDLAQ 209 (274)
Q Consensus 194 ~l~gadf~~A~L~~~q 209 (274)
+|.+++|++++|.+..
T Consensus 127 ~l~~a~l~~a~l~ga~ 142 (150)
T 2o6w_A 127 ILTGVNLEETHLKGIE 142 (150)
T ss_dssp BCTTCBCTTCBCTTCB
T ss_pred CccCCCCCCCCcCCCE
Confidence 6666666666655543
No 5
>3n90_A P15, thylakoid lumenal 15 kDa protein 1, chloroplastic; right-handed quadrilateral beta helix; 1.70A {Arabidopsis thaliana} SCOP: b.80.8.0
Probab=99.78 E-value=2.7e-20 Score=154.76 Aligned_cols=110 Identities=23% Similarity=0.310 Sum_probs=65.4
Q ss_pred CCceecCccccCccccCceecCceeccceecCceecCccccccccccceeecceecccccccccccceeecceeecccee
Q 023997 101 SAAQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSDTLMDRMVLNEANLTNAVL 180 (274)
Q Consensus 101 sg~~f~~~dL~~~~F~~~dl~~a~f~~a~l~~a~fs~a~L~~a~f~~a~f~~anf~gadf~~a~l~~a~f~~adL~~A~l 180 (274)
.|++|.+++|++++|.+++|++++|.+++|.+++|.+++|.+++|.+++|.+|+|.+++|++++|.+++|.+|+|++++|
T Consensus 4 ~g~~~~~~~~~~~~l~~~~f~~~~l~~~~f~~~~l~~a~f~~a~l~~a~f~~a~l~~a~f~~a~l~~a~f~~a~l~~a~f 83 (152)
T 3n90_A 4 GGGPYGQGVTRGQDLSGKDFSGQTLIRQDFKTSILRQANFKGAKLLGASFFDADLTGADLSEADLRGADFSLANVTKVNL 83 (152)
T ss_dssp GGCCCCHHHHTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBC
T ss_pred CCCcccCceEcCCCccCCcCCCCCcCcCccCCCeeCCCEeCCCCCCCCCccccCcCCCEeCCCCcCCCCCCCCCcCCCCc
Confidence 45555556666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred cccccccccccC-cEEeCCcccCceeCHHHH
Q 023997 181 VRTVLTRSDLGG-AIIEGADFSDAVIDLAQK 210 (274)
Q Consensus 181 ~~a~l~~a~f~~-a~l~gadf~~A~L~~~q~ 210 (274)
.+++|.+++|.+ ++|++++|++|+|.+..+
T Consensus 84 ~~a~l~~a~~~g~~~~~~a~l~~a~~~~a~l 114 (152)
T 3n90_A 84 TNANLEGATMMGNTSFKGSNITGADFTDVPL 114 (152)
T ss_dssp TTCBCTTCBCCSSCBCTTCBCTTCBCTTCCC
T ss_pred CCCCCCCCEEcCCceECCCEecCCEecCCcc
Confidence 666666666553 556666666666655544
No 6
>2bm5_A MFPA, RV3361C, pentapeptide repeat family protein; pentapeptide repeat protein, fluroquinolone resistance, DNA gyrase, DNA mimicry; 2.0A {Mycobacterium tuberculosis} SCOP: b.80.8.1 PDB: 2bm4_A 2bm6_A 2bm7_A
Probab=99.78 E-value=8.6e-20 Score=155.79 Aligned_cols=48 Identities=23% Similarity=0.280 Sum_probs=22.7
Q ss_pred ccccceeecceeeccceecccccccccccCcEEeCCcccCceeCHHHH
Q 023997 163 TLMDRMVLNEANLTNAVLVRTVLTRSDLGGAIIEGADFSDAVIDLAQK 210 (274)
Q Consensus 163 a~l~~a~f~~adL~~A~l~~a~l~~a~f~~a~l~gadf~~A~L~~~q~ 210 (274)
++|.+++|.+|+|++++|.+++|++++|.+++|+++||++|+|.+.++
T Consensus 110 a~l~~a~f~~a~L~~a~f~~~~l~~a~f~~a~L~~adl~~a~l~~~~~ 157 (186)
T 2bm5_A 110 CRLRETSLVDTDLRKCVLRGADLSGARTTGARLDDADLRGATVDPVLW 157 (186)
T ss_dssp CBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCCHHHH
T ss_pred CEEecCccCCCccCCCCcCCCccCCCEecCCccCCcccCCCEeecccc
Confidence 333333344444444444444444444455555555555555555544
No 7
>2w7z_A EFSQNR, pentapeptide repeat family protein; glutaraldehyde, gyrase inhibitor, cyclic pentylation, chemic modification; HET: LP6; 1.60A {Enterococcus faecalis}
Probab=99.77 E-value=1.5e-19 Score=157.34 Aligned_cols=17 Identities=18% Similarity=0.034 Sum_probs=7.1
Q ss_pred CCcccCceeCHHHHHHH
Q 023997 197 GADFSDAVIDLAQKQAL 213 (274)
Q Consensus 197 gadf~~A~L~~~q~~~l 213 (274)
+++|++|+|+..|...+
T Consensus 189 ~a~l~ga~~~~~q~~~l 205 (214)
T 2w7z_A 189 PNYLSGLXVTPEQAIYL 205 (214)
T ss_dssp GGGCTTCEECHHHHHHH
T ss_pred HHHcCCcccCHHHHHHH
Confidence 33344444444444443
No 8
>2xty_A QNRB1; cell cycle, pentapeptide repeat, PRP, antibiotic resistance, handed quadrilateral beta-helix; 1.80A {Klebsiella pneumoniae} PDB: 2xtw_A 2xtx_A
Probab=99.77 E-value=4.1e-19 Score=154.75 Aligned_cols=19 Identities=32% Similarity=0.424 Sum_probs=8.4
Q ss_pred EeCCcccCceeCHHHHHHH
Q 023997 195 IEGADFSDAVIDLAQKQAL 213 (274)
Q Consensus 195 l~gadf~~A~L~~~q~~~l 213 (274)
+++++|++|+++..|...|
T Consensus 189 l~~a~l~ga~~~~~q~~~l 207 (217)
T 2xty_A 189 IRGVDLQGVKLDNYQASLL 207 (217)
T ss_dssp TTTSCCTTCEECHHHHHHH
T ss_pred CCCCccCcCEechHHHHHH
Confidence 3333444444444444443
No 9
>2f3l_A RFR-domain; beta helix, unknown function; 2.11A {Cyanothece SP} SCOP: b.80.8.1 PDB: 2g0y_A
Probab=99.76 E-value=1.6e-19 Score=155.13 Aligned_cols=110 Identities=24% Similarity=0.253 Sum_probs=73.3
Q ss_pred ceecCccccCccccCceecCceeccceecCceecCccccccccccceeecceecccccccccccceeecceeeccceecc
Q 023997 103 AQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSDTLMDRMVLNEANLTNAVLVR 182 (274)
Q Consensus 103 ~~f~~~dL~~~~F~~~dl~~a~f~~a~l~~a~fs~a~L~~a~f~~a~f~~anf~gadf~~a~l~~a~f~~adL~~A~l~~ 182 (274)
..+.+++|++++|.+++|++++|.+++|.+|+|.+++|.+++|.++.|.+|+|.+++|++++|.++.|.+++|++|+|.+
T Consensus 47 ~~~~~~~f~~~~l~~~df~~~~L~~~~f~~~~l~~a~f~~a~L~~a~f~~a~l~~a~l~~a~L~~a~l~~a~f~~a~L~~ 126 (184)
T 2f3l_A 47 VTGSSASYEDVKLIGEDFSGKSLTYAQFTNADLTDSNFSEADLRGAVFNGSALIGADLHGADLTNGLAYLTSFKGADLTN 126 (184)
T ss_dssp -----CEEESCBCTTCBCTTCBCTTCEEESCBCTTCBCTTCBCTTCEEESCBCTTCBCTTCBCTTCEEEEEECTTCBCTT
T ss_pred ccccCccccCCeECCCcCCCCCcCCCEeccCccccCCcCCCCCcEeEEeeeccCCCeEEEeecccceecCcEeCccEeCC
Confidence 44556666666666777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred cccccccccCcEEeCCcccCceeCHHHHHH
Q 023997 183 TVLTRSDLGGAIIEGADFSDAVIDLAQKQA 212 (274)
Q Consensus 183 a~l~~a~f~~a~l~gadf~~A~L~~~q~~~ 212 (274)
++|.+++|.+++|.+++|++|+|.+..+..
T Consensus 127 a~l~~a~l~~a~f~~a~L~gadf~~a~l~~ 156 (184)
T 2f3l_A 127 AVLTEAIMMRTKFDDAKITGADFSLAVLDV 156 (184)
T ss_dssp CBCTTCEEEEEECTTCBCTTCBCTTCEECH
T ss_pred CEeeCCEECCCEEeCCEecCCEecCCCCCc
Confidence 777777777777777777777776665433
No 10
>3pss_A QNR; pentapeptide repeat, antibiotic resistance, DNA topoisomeras cell cycle; HET: MLY; 2.00A {Aeromonas hydrophila} PDB: 3psz_A
Probab=99.75 E-value=7e-19 Score=152.32 Aligned_cols=36 Identities=28% Similarity=0.316 Sum_probs=15.6
Q ss_pred ecccccccccccCcEEeCCcccCceeCHHHHHHHhh
Q 023997 180 LVRTVLTRSDLGGAIIEGADFSDAVIDLAQKQALCK 215 (274)
Q Consensus 180 l~~a~l~~a~f~~a~l~gadf~~A~L~~~q~~~lc~ 215 (274)
|++++|++++|.++++.+++|++++++..|+..+++
T Consensus 173 l~~a~l~~a~l~~~~l~~~~l~ga~~~~~q~~~l~~ 208 (216)
T 3pss_A 173 LQGCDLRQCDLPGLDLRRVNLDGVQINEDQQQALLE 208 (216)
T ss_dssp CTTCBCTTCCCTTCCTTTSCCTTCEEEGGGHHHHHH
T ss_pred cCCCCccCCEecCcccccCcccCcEeCHHHHHHHHH
Confidence 333333333333334444444444555555544443
No 11
>2xt2_A ALBG, MCBG-like protein; cell cycle, right handed quadrilateral beta helix; 2.00A {Xanthomonas albilineans} PDB: 2xt4_A
Probab=99.74 E-value=8.2e-19 Score=150.17 Aligned_cols=61 Identities=10% Similarity=0.239 Sum_probs=25.8
Q ss_pred eecCccccCccccCceecCceeccceecCceecCccccccccccceeecceeccccccccc
Q 023997 104 QFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSDTL 164 (274)
Q Consensus 104 ~f~~~dL~~~~F~~~dl~~a~f~~a~l~~a~fs~a~L~~a~f~~a~f~~anf~gadf~~a~ 164 (274)
+|++++|++++|++++|.+++|.+|+|.+|+|++++|.+++|.++.|.+|+|.+++|+++.
T Consensus 30 ~~~~~~f~~~~~~~~~l~~~~~~~~~f~~~~l~~a~~~~a~l~~~~f~~~~l~~a~f~~a~ 90 (200)
T 2xt2_A 30 RFEDCTFRQCNFTEAELNRCKFRECEFVDCNLSLISIPQTSFMEVRFVDCKMLGVNWTSAQ 90 (200)
T ss_dssp EEESCEEESCBCTTCEEESCEEEEEEEESCBCTTCBCTTCEEEEEEEESCBCTTCBGGGSC
T ss_pred EEccCEEEeeeccCCeecCCEEEecEeeecccccCccccCeeeeeEEEcCEecCCccccCc
Confidence 3333333333333444444444444444444444444444444444444444444444444
No 12
>2xt2_A ALBG, MCBG-like protein; cell cycle, right handed quadrilateral beta helix; 2.00A {Xanthomonas albilineans} PDB: 2xt4_A
Probab=99.74 E-value=6e-19 Score=151.02 Aligned_cols=105 Identities=12% Similarity=0.203 Sum_probs=43.2
Q ss_pred CCceecCccccCccccCceecCceeccceecCceecCcccccccccc-----------ceeecceeccccccccccccee
Q 023997 101 SAAQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEK-----------AVAYKANFTGADLSDTLMDRMV 169 (274)
Q Consensus 101 sg~~f~~~dL~~~~F~~~dl~~a~f~~a~l~~a~fs~a~L~~a~f~~-----------a~f~~anf~gadf~~a~l~~a~ 169 (274)
++++|++++|.+++|.+|+|.+++|.+++|.+++|.+|+|.+++|.+ +.|.+|+|.+++|.+++|.+++
T Consensus 42 ~~~~l~~~~~~~~~f~~~~l~~a~~~~a~l~~~~f~~~~l~~a~f~~a~~~~~~~l~~~~f~~~~l~~a~f~~a~l~~~~ 121 (200)
T 2xt2_A 42 TEAELNRCKFRECEFVDCNLSLISIPQTSFMEVRFVDCKMLGVNWTSAQWPSVKMEGALSFERCILNDSLFYGLYLAGVK 121 (200)
T ss_dssp TTCEEESCEEEEEEEESCBCTTCBCTTCEEEEEEEESCBCTTCBGGGSCCCSSCCTTSEEEESCBCTTCBCTTCBCTTCE
T ss_pred cCCeecCCEEEecEeeecccccCccccCeeeeeEEEcCEecCCccccCcccccccccceEEEcCcccccEEccCccCCCE
Confidence 33444444444444444444444444444333333333333333333 3344444444444444444444
Q ss_pred ecceeeccceecccccccccccCcEEeCCcccCcee
Q 023997 170 LNEANLTNAVLVRTVLTRSDLGGAIIEGADFSDAVI 205 (274)
Q Consensus 170 f~~adL~~A~l~~a~l~~a~f~~a~l~gadf~~A~L 205 (274)
|.+|+|.+++|.+++|++++|.+++|++++|.+++|
T Consensus 122 f~~~~l~~a~f~~a~l~~a~f~~a~l~~a~f~~a~l 157 (200)
T 2xt2_A 122 MVECRIHDANFTEADCEDADFTQSDLKGSTFHNTKL 157 (200)
T ss_dssp EESCBCTTCBCTTCBCTTCBCTTCBCTTCBCSSCBC
T ss_pred ecCCEeecccCCCCccccCCccCcccCCCCccCCcc
Confidence 444444444444444444444333333333333333
No 13
>3nb2_A Secreted effector protein; pentapeptide, HECT domain, HECT E ubiquitin ligase, ligase; HET: MES; 2.10A {Escherichia coli} PDB: 3naw_A* 3sqv_A
Probab=99.72 E-value=1.6e-18 Score=172.29 Aligned_cols=106 Identities=20% Similarity=0.301 Sum_probs=49.3
Q ss_pred CCCceecCccccCccccCceecCceeccceecCceecCccccccccccceeecceeccccccccccccee----ecceee
Q 023997 100 GSAAQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSDTLMDRMV----LNEANL 175 (274)
Q Consensus 100 lsg~~f~~~dL~~~~F~~~dl~~a~f~~a~l~~a~fs~a~L~~a~f~~a~f~~anf~gadf~~a~l~~a~----f~~adL 175 (274)
+.+++|++++|++++|.+++|++++|.+|+|.+|+|.+|+|.+++|.+++|.+|+|.+++|.+++|.+++ |.+|+|
T Consensus 29 f~~~dfsgadLsgadfsg~dLs~a~fsgA~L~~a~f~~anLsgA~L~gA~L~~a~L~~anL~~AnL~~A~L~a~L~~A~L 108 (613)
T 3nb2_A 29 AEELNYSGCDLSGLSLVGLNLSSVNFSGAVLDDTDLRMSDLSQAVLENCSFKNSILNECNFCYANLSNCIIRALFENSNF 108 (613)
T ss_dssp TTTTBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCEEEEEECTTCBCTTCBCTTCEEEEECTTCBC
T ss_pred cCCCeeCCCEecCCCcCCCcCCCCcccCCeeeEEEecCCEeCCCCCCCCEeCCCccCCCccCCCccccCcccceeccCEe
Confidence 3444555555555555544444444444444444444444444444444444444444444444444444 444444
Q ss_pred ccceecccccccccccC--cEEeCCcccCcee
Q 023997 176 TNAVLVRTVLTRSDLGG--AIIEGADFSDAVI 205 (274)
Q Consensus 176 ~~A~l~~a~l~~a~f~~--a~l~gadf~~A~L 205 (274)
++|+|.+|+|++++|.+ |+|++++|++|.|
T Consensus 109 sgAdL~~AdL~gA~f~~~~adL~gAdL~gA~L 140 (613)
T 3nb2_A 109 SNSNLKNASFKGSSYIQYPPILNEADLTGAII 140 (613)
T ss_dssp TTCBCTTCBCTTCBCSSSCCBCTTCBCTTCEE
T ss_pred cCCeecccEEeccEEecCccceeccccCCCee
Confidence 44444444444444443 4444444444444
No 14
>3nb2_A Secreted effector protein; pentapeptide, HECT domain, HECT E ubiquitin ligase, ligase; HET: MES; 2.10A {Escherichia coli} PDB: 3naw_A* 3sqv_A
Probab=99.71 E-value=2.8e-18 Score=170.61 Aligned_cols=111 Identities=25% Similarity=0.340 Sum_probs=69.9
Q ss_pred cCCCceecCccccCccccCceecCceeccceecCceecCccccccccccceeecceeccccccccc----ccceeeccee
Q 023997 99 IGSAAQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSDTL----MDRMVLNEAN 174 (274)
Q Consensus 99 ~lsg~~f~~~dL~~~~F~~~dl~~a~f~~a~l~~a~fs~a~L~~a~f~~a~f~~anf~gadf~~a~----l~~a~f~~ad 174 (274)
.+++++|++++|++++|++++|.+++|.+|+|++|+|.+++|.+++|.+++|.+|+|.+|+|++++ |.+++|.+|+
T Consensus 33 dfsgadLsgadfsg~dLs~a~fsgA~L~~a~f~~anLsgA~L~gA~L~~a~L~~anL~~AnL~~A~L~a~L~~A~LsgAd 112 (613)
T 3nb2_A 33 NYSGCDLSGLSLVGLNLSSVNFSGAVLDDTDLRMSDLSQAVLENCSFKNSILNECNFCYANLSNCIIRALFENSNFSNSN 112 (613)
T ss_dssp BCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCEEEEEECTTCBCTTCBCTTCEEEEECTTCBCTTCB
T ss_pred eeCCCEecCCCcCCCcCCCCcccCCeeeEEEecCCEeCCCCCCCCEeCCCccCCCccCCCccccCcccceeccCEecCCe
Confidence 366677777777777777777777777777777776666666666666666666666666666666 6666666666
Q ss_pred eccceecccccc-------cccccCcEE-eCCcccCceeCHHH
Q 023997 175 LTNAVLVRTVLT-------RSDLGGAII-EGADFSDAVIDLAQ 209 (274)
Q Consensus 175 L~~A~l~~a~l~-------~a~f~~a~l-~gadf~~A~L~~~q 209 (274)
|++|+|.+++|. +++|.+++| ++++|++|+|++.+
T Consensus 113 L~~AdL~gA~f~~~~adL~gAdL~gA~Ll~gAdLsgA~L~~a~ 155 (613)
T 3nb2_A 113 LKNASFKGSSYIQYPPILNEADLTGAIIIPGMVLSGAILGDVK 155 (613)
T ss_dssp CTTCBCTTCBCSSSCCBCTTCBCTTCEECTTCCCTTCBCCCCS
T ss_pred ecccEEeccEEecCccceeccccCCCeeCCCceecCCCccCCe
Confidence 655555555555 455555555 55555555554443
No 15
>2qyu_A Secreted effector protein; ubiquitin E3 ligase, ligase; HET: B3P; 2.10A {Salmonella typhimurium} PDB: 3sy2_A 2qza_A
Probab=99.63 E-value=8.9e-17 Score=158.55 Aligned_cols=109 Identities=16% Similarity=0.216 Sum_probs=49.1
Q ss_pred CCceecCccccCccccCc------eecCceeccceecCceecCccccccccccceeecceecccccccccccceeeccee
Q 023997 101 SAAQFGSADLRKAVHVKE------NFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSDTLMDRMVLNEAN 174 (274)
Q Consensus 101 sg~~f~~~dL~~~~F~~~------dl~~a~f~~a~l~~a~fs~a~L~~a~f~~a~f~~anf~gadf~~a~l~~a~f~~ad 174 (274)
.+.+|+++||++++|.++ +..+++|.+++|.+|+|.+++|++++|.+|+|.+|+|++|+|++|+|.+|+|.+|+
T Consensus 38 ~drDFsg~DLsgadLs~a~~~a~le~~ga~L~GanLsgAnLs~AdLs~A~L~gAnLs~AnLsgA~L~~AnLsgAnLsgAn 117 (627)
T 2qyu_A 38 ADRDFSNADFRNITFSKILPPSFMERDGDIIKGFNFSNSKFTYSDISHLHFDECRFTYSTLSDVVCSNTKFSNSDMNEVF 117 (627)
T ss_dssp TTTBCTTCBCTTCBGGGTSCGGGGSTTCCCEESCBCTTCBCTTCBCTTCEEESCBCTTCBCTTCBCTTCEEESCBCTTCE
T ss_pred cCCcCCCCCCCCCccccccccccccccCCccCCCccCCCccCCCCCCCCccCCcccCCCchhhhccccceECCcCCCCcc
Confidence 345777777777777664 22333333333333333333333333333333333333333333333333333333
Q ss_pred eccceec--ccccccccccCcEE-eCCcccCceeCHHH
Q 023997 175 LTNAVLV--RTVLTRSDLGGAII-EGADFSDAVIDLAQ 209 (274)
Q Consensus 175 L~~A~l~--~a~l~~a~f~~a~l-~gadf~~A~L~~~q 209 (274)
|.+|+|. +|+|.+|+|.+++| +||+|++|+|++.+
T Consensus 118 L~gA~L~~~gAnLsgAdL~gA~L~~gAdLsGA~L~~ad 155 (627)
T 2qyu_A 118 LQYSITTQQQPSFIDTTLKNTLIRHKANLSGVILNEPD 155 (627)
T ss_dssp ECCCTTCCSCCEEEEEECTTCEECSCCEEEEEECCCCC
T ss_pred cCCccccCCCCeeCCCCCCCCccccCccCCCCcCCCCc
Confidence 3333332 34444455555554 35555555554443
No 16
>2qyu_A Secreted effector protein; ubiquitin E3 ligase, ligase; HET: B3P; 2.10A {Salmonella typhimurium} PDB: 3sy2_A 2qza_A
Probab=99.57 E-value=1.2e-15 Score=150.55 Aligned_cols=101 Identities=21% Similarity=0.399 Sum_probs=43.9
Q ss_pred cCCCceecCccccCc-----------cccCceecCceeccceecCceecCccccccccccceeecceecccccccccccc
Q 023997 99 IGSAAQFGSADLRKA-----------VHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSDTLMDR 167 (274)
Q Consensus 99 ~lsg~~f~~~dL~~~-----------~F~~~dl~~a~f~~a~l~~a~fs~a~L~~a~f~~a~f~~anf~gadf~~a~l~~ 167 (274)
.+++++|++++|.++ +|.+++|.+++|.+++|++++|.+|+|++|+|.+++|.+|+|.+|+|++|+|.+
T Consensus 41 DFsg~DLsgadLs~a~~~a~le~~ga~L~GanLsgAnLs~AdLs~A~L~gAnLs~AnLsgA~L~~AnLsgAnLsgAnL~g 120 (627)
T 2qyu_A 41 DFSNADFRNITFSKILPPSFMERDGDIIKGFNFSNSKFTYSDISHLHFDECRFTYSTLSDVVCSNTKFSNSDMNEVFLQY 120 (627)
T ss_dssp BCTTCBCTTCBGGGTSCGGGGSTTCCCEESCBCTTCBCTTCBCTTCEEESCBCTTCBCTTCBCTTCEEESCBCTTCEECC
T ss_pred cCCCCCCCCCccccccccccccccCCccCCCccCCCccCCCCCCCCccCCcccCCCchhhhccccceECCcCCCCcccCC
Confidence 355566666665553 344444444444444444444444444444444444444444444444444444
Q ss_pred eeec--ceeeccceeccccc-ccccccCcEEeCCc
Q 023997 168 MVLN--EANLTNAVLVRTVL-TRSDLGGAIIEGAD 199 (274)
Q Consensus 168 a~f~--~adL~~A~l~~a~l-~~a~f~~a~l~gad 199 (274)
++|. +|+|++|+|.+++| .+++|++|+|++++
T Consensus 121 A~L~~~gAnLsgAdL~gA~L~~gAdLsGA~L~~ad 155 (627)
T 2qyu_A 121 SITTQQQPSFIDTTLKNTLIRHKANLSGVILNEPD 155 (627)
T ss_dssp CTTCCSCCEEEEEECTTCEECSCCEEEEEECCCCC
T ss_pred ccccCCCCeeCCCCCCCCccccCccCCCCcCCCCc
Confidence 4443 34444444444444 23333333333333
Done!