BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 023999
(274 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1IVH|A Chain A, Structure Of Human Isovaleryl-coa Dehydrogenase At 2.6
Angstroms Resolution: Structural Basis For Substrate
Specificity
pdb|1IVH|B Chain B, Structure Of Human Isovaleryl-coa Dehydrogenase At 2.6
Angstroms Resolution: Structural Basis For Substrate
Specificity
pdb|1IVH|C Chain C, Structure Of Human Isovaleryl-coa Dehydrogenase At 2.6
Angstroms Resolution: Structural Basis For Substrate
Specificity
pdb|1IVH|D Chain D, Structure Of Human Isovaleryl-coa Dehydrogenase At 2.6
Angstroms Resolution: Structural Basis For Substrate
Specificity
Length = 394
Score = 298 bits (764), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 142/231 (61%), Positives = 177/231 (76%), Gaps = 2/231 (0%)
Query: 32 FDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEXXXX 91
+ Q Q ++++ +F +E++AP+A ID+SN F WK +GN + GITAP +
Sbjct: 13 LSEEQRQLRQTMAKFLQEHLAPKAQEIDRSNEFKNLREFWKQLGNLGVLGITAPVQYGGS 72
Query: 92 XXXXXXHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGA 151
H + MEEISRASG+VGLSYGAHSNLCINQLVR+G+ AQK+KYLPKLISGE++GA
Sbjct: 73 GLGYLEHVLVMEEISRASGAVGLSYGAHSNLCINQLVRNGNEAQKEKYLPKLISGEYIGA 132
Query: 152 LAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKA--GSKG 209
LAMSEPNAGSDVV MK KA++ YI+NGNK W TNGP A L+VYAKTD+ A S+G
Sbjct: 133 LAMSEPNAGSDVVSMKLKAEKKGNHYILNGNKFWITNGPDADVLIVYAKTDLAAVPASRG 192
Query: 210 ITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKG 260
ITAFI+EKGMPGFST++KLDKLGMRGS+TCEL+FE+C +P N+LG E KG
Sbjct: 193 ITAFIVEKGMPGFSTSKKLDKLGMRGSNTCELIFEDCKIPAANILGHENKG 243
>pdb|1WS9|A Chain A, Crystal Structure Of Project Id Tt0172 From Thermus
Thermophilus Hb8
pdb|1WS9|B Chain B, Crystal Structure Of Project Id Tt0172 From Thermus
Thermophilus Hb8
pdb|2CX9|A Chain A, Crystal Structure Of Acyl-Coa Dehydrogenase
pdb|2CX9|B Chain B, Crystal Structure Of Acyl-Coa Dehydrogenase
pdb|2CX9|C Chain C, Crystal Structure Of Acyl-Coa Dehydrogenase
pdb|2CX9|D Chain D, Crystal Structure Of Acyl-Coa Dehydrogenase
pdb|2D29|A Chain A, Structural Study On Project Id Tt0172 From Thermus
Thermophilus Hb8
pdb|2D29|B Chain B, Structural Study On Project Id Tt0172 From Thermus
Thermophilus Hb8
Length = 387
Score = 152 bits (385), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 79/220 (35%), Positives = 125/220 (56%), Gaps = 6/220 (2%)
Query: 45 QFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEXXXXXXXXXXHCIAMEE 104
+F + +AP AA D++ +FP D L + + F + G P+ +E
Sbjct: 20 EFLKAEVAPGAAERDRTGAFPWD--LVRKLAEFGVFGALVPEAYGGAGLSTRLFARMVEA 77
Query: 105 ISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVV 164
I+ G++ L+ +H++L ++ GS AQK+ +LPKL SGE +GA ++EP +GSD
Sbjct: 78 IAYYDGALALTVASHNSLATGHILLAGSEAQKEAFLPKLASGEALGAWGLTEPGSGSDAA 137
Query: 165 GMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTD----IKAGSKGITAFIIEKGMP 220
+K KA++V+GG+ +NG K + T G VA VV A+TD + +GI+AF +
Sbjct: 138 ALKTKAEKVEGGWRLNGTKQFITQGSVAGVYVVMARTDPPPSPERKHQGISAFAFFRPER 197
Query: 221 GFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKG 260
G +K +KLG+ SDT +L+ E+ FVP E +LG+ GKG
Sbjct: 198 GLKVGRKEEKLGLTASDTAQLILEDLFVPEEALLGERGKG 237
>pdb|1JQI|A Chain A, Crystal Structure Of Rat Short Chain Acyl-Coa
Dehydrogenase Complexed With Acetoacetyl-Coa
pdb|1JQI|B Chain B, Crystal Structure Of Rat Short Chain Acyl-Coa
Dehydrogenase Complexed With Acetoacetyl-Coa
Length = 388
Score = 151 bits (382), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 78/232 (33%), Positives = 124/232 (53%), Gaps = 2/232 (0%)
Query: 29 SLLFDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEX 88
S+ +T +++ FA + + P AA +D+ + FP + K MG L + P+E
Sbjct: 7 SVELPETHQMLRQTCRDFAEKELVPIAAQLDKEHLFP--TSQVKKMGELGLLAMDVPEEL 64
Query: 89 XXXXXXXXXHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEH 148
+ IA+EEISR S G+ +++L + +++ GS QK +++ +G+
Sbjct: 65 SGAGLDYLAYSIALEEISRGCASTGVIMSVNNSLYLGPILKFGSSQQKQQWITPFTNGDK 124
Query: 149 VGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKAGSK 208
+G A+SEP GSD A +++NG K W TN A VV+A TD +K
Sbjct: 125 IGCFALSEPGNGSDAGAASTTAREEGDSWVLNGTKAWITNSWEASATVVFASTDRSRQNK 184
Query: 209 GITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKG 260
GI+AF++ PG + +K DKLG+R S T L+FE+C +P EN+LG+ G G
Sbjct: 185 GISAFLVPMPTPGLTLGKKEDKLGIRASSTANLIFEDCRIPKENLLGEPGMG 236
>pdb|2JIF|A Chain A, Structure Of Human Short-Branched Chain Acyl-Coa
Dehydrogenase (Acadsb)
pdb|2JIF|B Chain B, Structure Of Human Short-Branched Chain Acyl-Coa
Dehydrogenase (Acadsb)
pdb|2JIF|C Chain C, Structure Of Human Short-Branched Chain Acyl-Coa
Dehydrogenase (Acadsb)
pdb|2JIF|D Chain D, Structure Of Human Short-Branched Chain Acyl-Coa
Dehydrogenase (Acadsb)
Length = 404
Score = 150 bits (379), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 85/232 (36%), Positives = 127/232 (54%), Gaps = 9/232 (3%)
Query: 32 FDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFN--LHGITAPQEXX 89
F D ++ K SV +FA+E IAP + +D+++ + V + G F L GI E
Sbjct: 29 FTDEEMMIKSSVKKFAQEQIAPLVSTMDENSKMEKSV----IQGLFQQGLMGIEVDPEYG 84
Query: 90 XXXXXXXXHCIAMEEISRASGSVGLSYGAHSNLCINQLVR-HGSPAQKDKYLPKLISGEH 148
+ +EE+++ SV + + N IN L+R HG+ QK YLP+L + E
Sbjct: 85 GTGASFLSTVLVIEELAKVDASVAV-FCEIQNTLINTLIRKHGTEEQKATYLPQLTT-EK 142
Query: 149 VGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKAGSK 208
VG+ +SE AGSD +K +AD+ Y++NG+KMW ++ A +V A D G K
Sbjct: 143 VGSFCLSEAGAGSDSFALKTRADKEGDYYVLNGSKMWISSAEHAGLFLVMANVDPTIGYK 202
Query: 209 GITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKG 260
GIT+F++++ PG + +KLG+R S TC L FEN VP N+LGQ G G
Sbjct: 203 GITSFLVDRDTPGLHIGKPENKLGLRASSTCPLTFENVKVPEANILGQIGHG 254
>pdb|1BUC|A Chain A, Three-Dimensional Structure Of Butyryl-Coa Dehydrogenase
From Megasphaera Elsdenii
pdb|1BUC|B Chain B, Three-Dimensional Structure Of Butyryl-Coa Dehydrogenase
From Megasphaera Elsdenii
Length = 383
Score = 149 bits (377), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 72/164 (43%), Positives = 109/164 (66%), Gaps = 1/164 (0%)
Query: 98 HCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEP 157
+ +A+EE+++ V ++ A +LC N + + G+ AQK+K+L L+ G +GA ++EP
Sbjct: 72 YILAVEELAKYDAGVAITLSATVSLCANPIWQFGTEAQKEKFLVPLVEGTKLGAFGLTEP 131
Query: 158 NAGSDVVGMKCKADR-VDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKAGSKGITAFIIE 216
NAG+D G + A + DG Y +NG+K++ TNG A +V+A TD G+ GITAFI+E
Sbjct: 132 NAGTDASGQQTIATKNDDGTYTLNGSKIFITNGGAADIYIVFAMTDKSKGNHGITAFILE 191
Query: 217 KGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKG 260
G PGF+ +K DK+G+ S T ELVF++ VP EN+LG+EGKG
Sbjct: 192 DGTPGFTYGKKEDKMGIHTSQTMELVFQDVKVPAENMLGEEGKG 235
>pdb|2VIG|A Chain A, Crystal Structure Of Human Short-Chain Acyl Coa
Dehydrogenase
pdb|2VIG|B Chain B, Crystal Structure Of Human Short-Chain Acyl Coa
Dehydrogenase
pdb|2VIG|C Chain C, Crystal Structure Of Human Short-Chain Acyl Coa
Dehydrogenase
pdb|2VIG|D Chain D, Crystal Structure Of Human Short-Chain Acyl Coa
Dehydrogenase
pdb|2VIG|E Chain E, Crystal Structure Of Human Short-Chain Acyl Coa
Dehydrogenase
pdb|2VIG|F Chain F, Crystal Structure Of Human Short-Chain Acyl Coa
Dehydrogenase
pdb|2VIG|G Chain G, Crystal Structure Of Human Short-Chain Acyl Coa
Dehydrogenase
pdb|2VIG|H Chain H, Crystal Structure Of Human Short-Chain Acyl Coa
Dehydrogenase
Length = 391
Score = 146 bits (368), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 80/233 (34%), Positives = 124/233 (53%), Gaps = 4/233 (1%)
Query: 29 SLLFDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEX 88
S+ +T ++ FA + + P AA +D+ + FP K MG L + P+E
Sbjct: 3 SVELPETHQMLLQTCRDFAEKELFPIAAQVDKEHLFP--AAQVKKMGGLGLLAMDVPEEL 60
Query: 89 XXXXXXXXXHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEH 148
+ IAMEEISR S G+ +++L + +++ GS QK ++ SG+
Sbjct: 61 GGAGLDYLAYAIAMEEISRGCASTGVIMSVNNSLYLGPILKFGSKEQKQAWVTPFTSGDK 120
Query: 149 VGALAMSEPNAGSDVVGMKCKADRVDG-GYIINGNKMWCTNGPVAQTLVVYAKTDIKAGS 207
+G A+SEP GSD G R +G +++NG K W TN A VV+A TD +
Sbjct: 121 IGCFALSEPGNGSDA-GAASTTARAEGDSWVLNGTKAWITNAWEASAAVVFASTDRALQN 179
Query: 208 KGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKG 260
K I+AF++ PG + +K DKLG+RGS T L+FE+C +P +++LG+ G G
Sbjct: 180 KSISAFLVPMPTPGLTLGKKEDKLGIRGSSTANLIFEDCRIPKDSILGEPGMG 232
>pdb|2DVL|A Chain A, Crystal Structure Of Project Tt0160 From Thermus
Thermophilus Hb8
pdb|2DVL|B Chain B, Crystal Structure Of Project Tt0160 From Thermus
Thermophilus Hb8
Length = 372
Score = 144 bits (364), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 84/224 (37%), Positives = 124/224 (55%), Gaps = 13/224 (5%)
Query: 41 ESVGQFARENIAPRAANIDQSNSFPQDVNLW---KLMGNFNLHGITAPQEXXXXXXXXXX 97
++V + ARE + P A D+ +P W K + L G+T P+E
Sbjct: 12 DAVRRVAREVLYPLAPEYDRKAEYP-----WPQLKALAELGLLGMTTPEEWGGVGLDSVT 66
Query: 98 HCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEP 157
+A+EE++ A SV + S L L+R GS AQK +YL L GE +GA ++EP
Sbjct: 67 WALALEELAAADPSVAVIVSVTSGLPQYMLLRFGSEAQKRRYLVPLARGEWIGAFCLTEP 126
Query: 158 NAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKAGSKGITAFIIEK 217
AGSD ++ +A RV GG+++NG K W T+ A VV A+T+ KGI+AF++EK
Sbjct: 127 QAGSDAKSLRAEARRVKGGFVLNGVKSWITSAGHAHLYVVMARTE-----KGISAFLVEK 181
Query: 218 GMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGC 261
G PG S + +K+G+ + T E+ E FVP EN+LG+EG+G
Sbjct: 182 GTPGLSFGRPEEKMGLHAAHTAEVRLEEVFVPEENLLGEEGRGL 225
>pdb|3GQT|A Chain A, Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei With Fragment
(1,4-Dimethyl-1,2,3,4-
Tetrahydroquinoxalin-6-Yl)methylamine
pdb|3GQT|B Chain B, Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei With Fragment
(1,4-Dimethyl-1,2,3,4-
Tetrahydroquinoxalin-6-Yl)methylamine
pdb|3GQT|C Chain C, Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei With Fragment
(1,4-Dimethyl-1,2,3,4-
Tetrahydroquinoxalin-6-Yl)methylamine
pdb|3GQT|D Chain D, Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei With Fragment
(1,4-Dimethyl-1,2,3,4-
Tetrahydroquinoxalin-6-Yl)methylamine
pdb|3GNC|A Chain A, Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei With Fragment 6421
pdb|3GNC|B Chain B, Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei With Fragment 6421
pdb|3GNC|C Chain C, Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei With Fragment 6421
pdb|3GNC|D Chain D, Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei With Fragment 6421
Length = 399
Score = 142 bits (357), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 80/229 (34%), Positives = 119/229 (51%), Gaps = 7/229 (3%)
Query: 30 LLFD----DTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAP 85
LL D D + +++ +A+ +APR + + D +++ MG L G T P
Sbjct: 16 LLLDQQLADDERMVRDAAHAYAQGKLAPRVTEAFRHET--TDAAIFREMGEIGLLGPTIP 73
Query: 86 QEXXXXXXXXXXHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLIS 145
++ + + E+ R S+L + + GS AQK+KYLPKL +
Sbjct: 74 EQYGGPGLDYVSYGLIAREVERVDSGYRSMMSVQSSLVMVPIFEFGSDAQKEKYLPKLAT 133
Query: 146 GEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKA 205
GE +G ++EPN GSD M +A +V GGY ++G+KMW TN P+A VV+AK D +
Sbjct: 134 GEWIGCFGLTEPNHGSDPGSMVTRARKVPGGYSLSGSKMWITNSPIADVFVVWAKLD-ED 192
Query: 206 GSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVL 254
G I FI+EKG G S K+G+R S T E+V + FVP EN+L
Sbjct: 193 GRDEIRGFILEKGCKGLSAPAIHGKVGLRASITGEIVLDEAFVPEENIL 241
>pdb|3D6B|A Chain A, 2.2 A Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei
pdb|3D6B|B Chain B, 2.2 A Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei
pdb|3D6B|C Chain C, 2.2 A Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei
pdb|3D6B|D Chain D, 2.2 A Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei
Length = 395
Score = 142 bits (357), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 80/229 (34%), Positives = 119/229 (51%), Gaps = 7/229 (3%)
Query: 30 LLFD----DTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAP 85
LL D D + +++ +A+ +APR + + D +++ MG L G T P
Sbjct: 12 LLLDQQLADDERMVRDAAHAYAQGKLAPRVTEAFRHET--TDAAIFREMGEIGLLGPTIP 69
Query: 86 QEXXXXXXXXXXHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLIS 145
++ + + E+ R S+L + + GS AQK+KYLPKL +
Sbjct: 70 EQYGGPGLDYVSYGLIAREVERVDSGYRSMMSVQSSLVMVPIFEFGSDAQKEKYLPKLAT 129
Query: 146 GEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKA 205
GE +G ++EPN GSD M +A +V GGY ++G+KMW TN P+A VV+AK D +
Sbjct: 130 GEWIGCFGLTEPNHGSDPGSMVTRARKVPGGYSLSGSKMWITNSPIADVFVVWAKLD-ED 188
Query: 206 GSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVL 254
G I FI+EKG G S K+G+R S T E+V + FVP EN+L
Sbjct: 189 GRDEIRGFILEKGCKGLSAPAIHGKVGLRASITGEIVLDEAFVPEENIL 237
>pdb|3EOM|A Chain A, 2.4 A Crystal Structure Of Native Glutaryl-Coa
Dehydrogenase From Burkholderia Pseudomallei
pdb|3EOM|B Chain B, 2.4 A Crystal Structure Of Native Glutaryl-Coa
Dehydrogenase From Burkholderia Pseudomallei
pdb|3EOM|C Chain C, 2.4 A Crystal Structure Of Native Glutaryl-Coa
Dehydrogenase From Burkholderia Pseudomallei
pdb|3EOM|D Chain D, 2.4 A Crystal Structure Of Native Glutaryl-Coa
Dehydrogenase From Burkholderia Pseudomallei
pdb|3EON|A Chain A, 2.55a Crystal Structure Of Native Glutaryl-Coa
Dehydrogenase From Burkholderia Pseudomallei In Complex
With A Small Molecule
pdb|3EON|B Chain B, 2.55a Crystal Structure Of Native Glutaryl-Coa
Dehydrogenase From Burkholderia Pseudomallei In Complex
With A Small Molecule
pdb|3EON|C Chain C, 2.55a Crystal Structure Of Native Glutaryl-Coa
Dehydrogenase From Burkholderia Pseudomallei In Complex
With A Small Molecule
pdb|3EON|D Chain D, 2.55a Crystal Structure Of Native Glutaryl-Coa
Dehydrogenase From Burkholderia Pseudomallei In Complex
With A Small Molecule
pdb|3II9|A Chain A, Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei At 1.73 Angstrom
pdb|3II9|B Chain B, Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei At 1.73 Angstrom
pdb|3II9|C Chain C, Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei At 1.73 Angstrom
pdb|3II9|D Chain D, Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei At 1.73 Angstrom
Length = 396
Score = 142 bits (357), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 80/229 (34%), Positives = 119/229 (51%), Gaps = 7/229 (3%)
Query: 30 LLFD----DTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAP 85
LL D D + +++ +A+ +APR + + D +++ MG L G T P
Sbjct: 13 LLLDQQLADDERMVRDAAHAYAQGKLAPRVTEAFRHET--TDAAIFREMGEIGLLGPTIP 70
Query: 86 QEXXXXXXXXXXHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLIS 145
++ + + E+ R S+L + + GS AQK+KYLPKL +
Sbjct: 71 EQYGGPGLDYVSYGLIAREVERVDSGYRSMMSVQSSLVMVPIFEFGSDAQKEKYLPKLAT 130
Query: 146 GEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKA 205
GE +G ++EPN GSD M +A +V GGY ++G+KMW TN P+A VV+AK D +
Sbjct: 131 GEWIGCFGLTEPNHGSDPGSMVTRARKVPGGYSLSGSKMWITNSPIADVFVVWAKLD-ED 189
Query: 206 GSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVL 254
G I FI+EKG G S K+G+R S T E+V + FVP EN+L
Sbjct: 190 GRDEIRGFILEKGCKGLSAPAIHGKVGLRASITGEIVLDEAFVPEENIL 238
>pdb|3MPI|A Chain A, Structure Of The Glutaryl-Coenzyme A Dehydrogenase
Glutaryl-Coa Complex
pdb|3MPI|B Chain B, Structure Of The Glutaryl-Coenzyme A Dehydrogenase
Glutaryl-Coa Complex
pdb|3MPI|C Chain C, Structure Of The Glutaryl-Coenzyme A Dehydrogenase
Glutaryl-Coa Complex
pdb|3MPI|D Chain D, Structure Of The Glutaryl-Coenzyme A Dehydrogenase
Glutaryl-Coa Complex
pdb|3MPJ|A Chain A, Structure Of The Glutaryl-Coenzyme A Dehydrogenase
pdb|3MPJ|B Chain B, Structure Of The Glutaryl-Coenzyme A Dehydrogenase
pdb|3MPJ|D Chain D, Structure Of The Glutaryl-Coenzyme A Dehydrogenase
pdb|3MPJ|E Chain E, Structure Of The Glutaryl-Coenzyme A Dehydrogenase
pdb|3MPJ|F Chain F, Structure Of The Glutaryl-Coenzyme A Dehydrogenase
pdb|3MPJ|G Chain G, Structure Of The Glutaryl-Coenzyme A Dehydrogenase
Length = 397
Score = 139 bits (351), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 83/230 (36%), Positives = 121/230 (52%), Gaps = 6/230 (2%)
Query: 36 QLQ-FKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEXXXXXXX 94
+LQ ++ V F + I P A D N FP + + + MG G P+E
Sbjct: 8 ELQMLQKEVRNFVNKKIVPFADQWDNENHFPYEEAV-RPMGELGFFGTVIPEEYGGEGMD 66
Query: 95 X--XXHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGAL 152
I EEI+R S ++ + C ++ +GS A K KY+PKL S E +G
Sbjct: 67 QGWLAAMIVTEEIARGSSALRVQLNMEVLGCAYTILTYGSEALKKKYVPKLSSAEFLGGF 126
Query: 153 AMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKAGSKGITA 212
++EP+AGSDV+ M A+ +++NG+K W +N A L+ YA TD AGS+G++A
Sbjct: 127 GITEPDAGSDVMAMSSTAEDKGDHWLLNGSKTWISNAAQADVLIYYAYTDKAAGSRGLSA 186
Query: 213 FIIE-KGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGC 261
F+IE + PG T+ L+KLG S T EL +N VP EN+LG+ G G
Sbjct: 187 FVIEPRNFPGIKTSN-LEKLGSHASPTGELFLDNVKVPKENILGKPGDGA 235
>pdb|3PFD|A Chain A, Crystal Structure Of An Acyl-Coa Dehydrogenase From
Mycobacterium Thermoresistibile Bound To Reduced Flavin
Adenine Dinucleotide Solved By Combined Iodide Ion Sad
Mr
pdb|3PFD|B Chain B, Crystal Structure Of An Acyl-Coa Dehydrogenase From
Mycobacterium Thermoresistibile Bound To Reduced Flavin
Adenine Dinucleotide Solved By Combined Iodide Ion Sad
Mr
pdb|3PFD|C Chain C, Crystal Structure Of An Acyl-Coa Dehydrogenase From
Mycobacterium Thermoresistibile Bound To Reduced Flavin
Adenine Dinucleotide Solved By Combined Iodide Ion Sad
Mr
pdb|3PFD|D Chain D, Crystal Structure Of An Acyl-Coa Dehydrogenase From
Mycobacterium Thermoresistibile Bound To Reduced Flavin
Adenine Dinucleotide Solved By Combined Iodide Ion Sad
Mr
Length = 393
Score = 138 bits (347), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 79/230 (34%), Positives = 120/230 (52%), Gaps = 9/230 (3%)
Query: 34 DTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITA---PQEXXX 90
+ + +E++ A + IAP AA +D+ FP++ + N G +A P+E
Sbjct: 21 EEHIALREAIRALAEKEIAPYAAEVDEKARFPEEA-----LAALNSSGFSAIHVPEEYGG 75
Query: 91 XXXXXXXHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVG 150
CI +EE++R S L A + L L+ GS K + LP + SGE +
Sbjct: 76 QGADSVATCIVIEEVARVDCSASL-IPAVNKLGTMGLILRGSEELKKQVLPAVASGEAMA 134
Query: 151 ALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKAGSKGI 210
+ A+SE AGSD M+ +A +I+NG+K W TNG + V A TD G+ GI
Sbjct: 135 SYALSEREAGSDAASMRTRAVADGDDWILNGSKCWITNGGKSTWYTVMAVTDPDKGANGI 194
Query: 211 TAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKG 260
+AF++ K GF+ K KLG++GS T EL FENC +P + ++G+ G G
Sbjct: 195 SAFMVHKDDEGFTVGPKERKLGIKGSPTTELYFENCRIPGDRIIGEPGTG 244
>pdb|2Z1Q|A Chain A, Crystal Structure Of Acyl Coa Dehydrogenase
pdb|2Z1Q|B Chain B, Crystal Structure Of Acyl Coa Dehydrogenase
Length = 577
Score = 134 bits (338), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 77/231 (33%), Positives = 118/231 (51%), Gaps = 8/231 (3%)
Query: 32 FDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEXXXX 91
FD++ + + F + P ++ +V L + G L I P+E
Sbjct: 28 FDESVKEIARTTRTFVEREVLPLLERMEHGE-LELNVPLMRKAGELGLLAIDVPEEYGGL 86
Query: 92 XXXXXXHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGA 151
+ EE+S SG ++YGAH+++ LV G+ QK KYLPKL SGE + A
Sbjct: 87 DLPKVISTVVAEELS-GSGGFSVTYGAHTSIGTLPLVYFGTEEQKRKYLPKLASGEWIAA 145
Query: 152 LAMSEPNAGSDVVGMKCKADRVDGG--YIINGNKMWCTNGPVAQTLVVYAKTDIKAGSKG 209
++EP +GSD + K +A + G YI+NG K W +N A V+AK D +
Sbjct: 146 YCLTEPGSGSDALAAKTRATLSEDGKHYILNGVKQWISNAGFAHLFTVFAKVD----GEH 201
Query: 210 ITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKG 260
TAF++E+ PG S + K+G++ S T +++ E+ VP ENVLG+ GKG
Sbjct: 202 FTAFLVERDTPGLSFGPEEKKMGIKASSTRQVILEDVKVPVENVLGEIGKG 252
>pdb|1UKW|A Chain A, Crystal Structure Of Medium-Chain Acyl-Coa Dehydrogenase
From Thermus Thermophilus Hb8
pdb|1UKW|B Chain B, Crystal Structure Of Medium-Chain Acyl-Coa Dehydrogenase
From Thermus Thermophilus Hb8
Length = 379
Score = 130 bits (328), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 76/232 (32%), Positives = 118/232 (50%), Gaps = 9/232 (3%)
Query: 32 FDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGI---TAPQEX 88
+ Q Q + +FA+E I P A D+ P W ++ + G+ P+E
Sbjct: 5 LTEEQRQLQALARRFAKEVILPVAQEYDEKEEVP-----WPVIEKLHEVGLLNAIIPEEY 59
Query: 89 XXXXXXXXXHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEH 148
I EE++ A + + S+L I ++ G+ QK+++L L
Sbjct: 60 GGMGLKMLDEVIVGEELAYACMGI-YTIPMASDLGITPVLLAGTEEQKERFLRPLTEKPA 118
Query: 149 VGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKAGSK 208
+ A A+SEP GSD +K +A R Y++NG KMW +NG A+ +VV+A + + K
Sbjct: 119 LAAFALSEPGNGSDAAALKTRAIRQGDHYVLNGTKMWISNGGEAEWVVVFATVNPELRHK 178
Query: 209 GITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKG 260
G+ A ++E+G PGF + K+G R S T ELVFE+ VP EN LG+EG+G
Sbjct: 179 GVVALVVERGTPGFKAIKIHGKMGQRASGTYELVFEDVKVPVENRLGEEGEG 230
>pdb|3OWA|A Chain A, Crystal Structure Of Acyl-Coa Dehydrogenase Complexed With
Fad From Bacillus Anthracis
pdb|3OWA|B Chain B, Crystal Structure Of Acyl-Coa Dehydrogenase Complexed With
Fad From Bacillus Anthracis
pdb|3OWA|C Chain C, Crystal Structure Of Acyl-Coa Dehydrogenase Complexed With
Fad From Bacillus Anthracis
pdb|3OWA|D Chain D, Crystal Structure Of Acyl-Coa Dehydrogenase Complexed With
Fad From Bacillus Anthracis
Length = 597
Score = 130 bits (327), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 78/217 (35%), Positives = 112/217 (51%), Gaps = 8/217 (3%)
Query: 46 FARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEXXXXXXXXXXHCIAMEEI 105
F + P ++Q + F + V L K G L G P+E + E+
Sbjct: 47 FIVNEVLPELEYLEQ-HEFDRSVRLLKEAGELGLLGADVPEEYGGIGLDKVSSALIAEKF 105
Query: 106 SRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVG 165
SRA G +++GAH + +V G+ QK KYLP L +GE + A A++EP +GSD +G
Sbjct: 106 SRAGG-FAITHGAHVGIGSLPIVLFGNEEQKKKYLPLLATGEKLAAYALTEPGSGSDALG 164
Query: 166 MKCKADRVDGG--YIINGNKMWCTNGPVAQTLVVYAKTDIKAGSKGITAFIIEKGMPGFS 223
K A G Y++NG K W TN A +VYAK D + +AFI+EK G S
Sbjct: 165 AKTTARLNAEGTHYVLNGEKQWITNSAFADVFIVYAKID----GEHFSAFIVEKDYAGVS 220
Query: 224 TAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKG 260
T+ + K G++ S T L+ E+ VP EN+LG+ GKG
Sbjct: 221 TSPEEKKXGIKCSSTRTLILEDALVPKENLLGEIGKG 257
>pdb|2PG0|A Chain A, Crystal Structure Of Acyl-Coa Dehydrogenase From
Geobacillus Kaustophilus
pdb|2PG0|B Chain B, Crystal Structure Of Acyl-Coa Dehydrogenase From
Geobacillus Kaustophilus
Length = 385
Score = 129 bits (324), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 74/237 (31%), Positives = 123/237 (51%), Gaps = 9/237 (3%)
Query: 28 TSLLFDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAP-- 85
T+ + F+ + +F + P + ++ P+ + W MG +G P
Sbjct: 6 TARYLREEHHMFRAAFRKFLEKEAYPHYNDWEKRGIIPR--SFWAKMGE---NGFLCPWV 60
Query: 86 QEXXXXXXXXXXHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLIS 145
E + + + E GS + G H+++ + +G+ QK K+LPK ++
Sbjct: 61 DEKYGGLNADFAYSVVINEELEKVGSSLVGIGLHNDIVTPYIASYGTEEQKQKWLPKCVT 120
Query: 146 GEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKA 205
GE + A+AM+EP AGSD+ + A + YI+NG K + TNG A +VV KTD +A
Sbjct: 121 GELITAIAMTEPGAGSDLANISTTAVKDGDYYIVNGQKTFITNGIHADLIVVACKTDPQA 180
Query: 206 G--SKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKG 260
+GI+ ++E+ PGF+ +KL+K+G+ DT EL F++ VP N+LG+EGKG
Sbjct: 181 KPPHRGISLLVVERDTPGFTRGRKLEKVGLHAQDTAELFFQDAKVPAYNLLGEEGKG 237
>pdb|2UXW|A Chain A, Crystal Structure Of Human Very Long Chain Acyl-coa
Dehydrogenase (acadvl)
Length = 607
Score = 127 bits (319), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 74/234 (31%), Positives = 121/234 (51%), Gaps = 14/234 (5%)
Query: 41 ESVGQFARENIAPRAANIDQSNSFPQDVNL-------WKLMGNFNLHGITAPQEXXXXXX 93
E QF +E + P + ++ N ++ L W+ + G+ P E
Sbjct: 48 EEQTQFLKELVEPVSRFFEEVNDPAKNDALEMVEETTWQGLKELGAFGLQVPSELGGVGL 107
Query: 94 XXXXHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALA 153
+ +E + VG++ GAH ++ ++ G+ AQK+KYLPKL SGE V A
Sbjct: 108 CNTQYARLVEIVGMHDLGVGITLGAHQSIGFKGILLFGTKAQKEKYLPKLASGETVAAFC 167
Query: 154 MSEPNAGSDVVGMKCKADRVDGG--YIINGNKMWCTNGPVAQTLVVYAKTDIKAGSKG-- 209
++EP++GSD ++ A G Y +NG+K+W +NG +A V+AKT + + G
Sbjct: 168 LTEPSSGSDAASIRTSAVPSPCGKYYTLNGSKLWISNGGLADIFTVFAKTPVTDPATGAV 227
Query: 210 ---ITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKG 260
ITAF++E+G G + K+G++ S+T E+ F+ VP+ENVLG+ G G
Sbjct: 228 KEKITAFVVERGFGGITHGPPEKKMGIKASNTAEVFFDGVRVPSENVLGEVGSG 281
>pdb|3B96|A Chain A, Structural Basis For Substrate Fatty-Acyl Chain
Specificity: Crystal Structure Of Human Very-Long-Chain
Acyl-Coa Dehydrogenase
Length = 587
Score = 127 bits (319), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 74/234 (31%), Positives = 121/234 (51%), Gaps = 14/234 (5%)
Query: 41 ESVGQFARENIAPRAANIDQSNSFPQDVNL-------WKLMGNFNLHGITAPQEXXXXXX 93
E QF +E + P + ++ N ++ L W+ + G+ P E
Sbjct: 28 EEQTQFLKELVEPVSRFFEEVNDPAKNDALEMVEETTWQGLKELGAFGLQVPSELGGVGL 87
Query: 94 XXXXHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALA 153
+ +E + VG++ GAH ++ ++ G+ AQK+KYLPKL SGE V A
Sbjct: 88 CNTQYARLVEIVGMHDLGVGITLGAHQSIGFKGILLFGTKAQKEKYLPKLASGETVAAFC 147
Query: 154 MSEPNAGSDVVGMKCKADRVDGG--YIINGNKMWCTNGPVAQTLVVYAKTDIKAGSKG-- 209
++EP++GSD ++ A G Y +NG+K+W +NG +A V+AKT + + G
Sbjct: 148 LTEPSSGSDAASIRTSAVPSPCGKYYTLNGSKLWISNGGLADIFTVFAKTPVTDPATGAV 207
Query: 210 ---ITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKG 260
ITAF++E+G G + K+G++ S+T E+ F+ VP+ENVLG+ G G
Sbjct: 208 KEKITAFVVERGFGGITHGPPEKKMGIKASNTAEVFFDGVRVPSENVLGEVGSG 261
>pdb|1UDY|A Chain A, Medium-Chain Acyl-Coa Dehydrogenase With
3-Thiaoctanoyl-Coa
pdb|1UDY|B Chain B, Medium-Chain Acyl-Coa Dehydrogenase With
3-Thiaoctanoyl-Coa
pdb|1UDY|C Chain C, Medium-Chain Acyl-Coa Dehydrogenase With
3-Thiaoctanoyl-Coa
pdb|1UDY|D Chain D, Medium-Chain Acyl-Coa Dehydrogenase With
3-Thiaoctanoyl-Coa
Length = 396
Score = 127 bits (318), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 85/239 (35%), Positives = 117/239 (48%), Gaps = 8/239 (3%)
Query: 26 SSTSLLFDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAP 85
S S + Q +F+ + +FARE I P AA D++ +P V L K L P
Sbjct: 10 SGFSFELTEQQKEFQATARKFAREEIIPVAAEYDRTGEYP--VPLLKRAWELGLMNTHIP 67
Query: 86 QEXXXXXXXXXXHCIAMEEISRASGSVGLSYGAHSN-LCINQLVRHGSPAQKDKYLPKLI 144
+ C+ EE+ A G G+ +N L L+ G+ Q+ KYL ++
Sbjct: 68 ESFGGLGLGIIDSCLITEEL--AYGCTGVQTAIEANTLGQVPLIIGGNYQQQKKYLGRMT 125
Query: 145 SGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIK 204
+ A ++EP AGSDV G+K KA++ YIING KMW TNG A + A++D
Sbjct: 126 EEPLMCAYCVTEPGAGSDVAGIKTKAEKKGDEYIINGQKMWITNGGKANWYFLLARSDPD 185
Query: 205 ---AGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKG 260
SK T FI+E PG +K +G R SDT +VFE+ VP ENVL EG G
Sbjct: 186 PKAPASKAFTGFIVEADTPGVQIGRKEINMGQRCSDTRGIVFEDVRVPKENVLTGEGAG 244
>pdb|3MDD|A Chain A, Crystal Structures Of Medium Chain Acyl-Coa Dehydrogenase
From Pig Liver Mitochondria With And Without Substrate
pdb|3MDD|B Chain B, Crystal Structures Of Medium Chain Acyl-Coa Dehydrogenase
From Pig Liver Mitochondria With And Without Substrate
pdb|3MDE|A Chain A, Crystal Structures Of Medium Chain Acyl-Coa Dehydrogenase
From Pig Liver Mitochondria With And Without Substrate
pdb|3MDE|B Chain B, Crystal Structures Of Medium Chain Acyl-Coa Dehydrogenase
From Pig Liver Mitochondria With And Without Substrate
Length = 385
Score = 126 bits (317), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 84/236 (35%), Positives = 116/236 (49%), Gaps = 8/236 (3%)
Query: 29 SLLFDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEX 88
S + Q +F+ + +FARE I P AA D++ +P V L K L P+
Sbjct: 3 SFELTEQQKEFQATARKFAREEIIPVAAEYDRTGEYP--VPLLKRAWELGLMNTHIPESF 60
Query: 89 XXXXXXXXXHCIAMEEISRASGSVGLSYGAHSN-LCINQLVRHGSPAQKDKYLPKLISGE 147
C+ EE+ A G G+ +N L L+ G+ Q+ KYL ++
Sbjct: 61 GGLGLGIIDSCLITEEL--AYGCTGVQTAIEANTLGQVPLIIGGNYQQQKKYLGRMTEEP 118
Query: 148 HVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIK--- 204
+ A ++EP AGSDV G+K KA++ YIING KMW TNG A + A++D
Sbjct: 119 LMCAYCVTEPGAGSDVAGIKTKAEKKGDEYIINGQKMWITNGGKANWYFLLARSDPDPKA 178
Query: 205 AGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKG 260
SK T FI+E PG +K +G R SDT +VFE+ VP ENVL EG G
Sbjct: 179 PASKAFTGFIVEADTPGVQIGRKEINMGQRCSDTRGIVFEDVRVPKENVLTGEGAG 234
>pdb|3NF4|A Chain A, Crystal Structure Of Acyl-Coa Dehydrogenase From
Mycobacterium Thermoresistibile Bound To Flavin Adenine
Dinucleotide
pdb|3NF4|B Chain B, Crystal Structure Of Acyl-Coa Dehydrogenase From
Mycobacterium Thermoresistibile Bound To Flavin Adenine
Dinucleotide
Length = 387
Score = 124 bits (310), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 68/233 (29%), Positives = 121/233 (51%), Gaps = 5/233 (2%)
Query: 30 LLFDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEXX 89
LL + E + A + + P ++ ++P+ V ++ +G L + P+E
Sbjct: 14 LLPSQEAAELIELTREIADKVLDPIVDRHEKDETYPEGV--FEQLGAAGLLSLPQPEEWG 71
Query: 90 XXXXXXXXHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHV 149
+ +EEI+ SV ++ HS L + L+ G+ QK ++LP ++SGE +
Sbjct: 72 GGGQPYEVYLQVLEEIAARWASVAVAVSVHS-LSSHPLLVFGTEEQKKRWLPGMLSGEQI 130
Query: 150 GALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKAGSKG 209
GA ++SEP AGSD ++C A DGGY+ING+K W T+G A ++A+T GS+G
Sbjct: 131 GAYSLSEPQAGSDAAALRCAATPTDGGYVINGSKSWITHGGKADFYTLFARTG--EGSRG 188
Query: 210 ITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGCN 262
++ F++ PG S + +K+G+ T ++N + + +G+EG+G
Sbjct: 189 VSCFLVPADQPGLSFGKPEEKMGLHAVPTTSAFYDNARIDADRRIGEEGQGLQ 241
>pdb|2A1T|A Chain A, Structure Of The Human Mcad:etf E165betaa Complex
pdb|2A1T|B Chain B, Structure Of The Human Mcad:etf E165betaa Complex
pdb|2A1T|C Chain C, Structure Of The Human Mcad:etf E165betaa Complex
pdb|2A1T|D Chain D, Structure Of The Human Mcad:etf E165betaa Complex
Length = 421
Score = 124 bits (310), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 84/238 (35%), Positives = 119/238 (50%), Gaps = 12/238 (5%)
Query: 29 SLLFDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDV--NLWKLMGNFNLHGITAPQ 86
S F + Q +F+ + +FARE I P AA D++ +P + W+L G N H P+
Sbjct: 38 SFEFTEQQKEFQATARKFAREEIIPVAAEYDKTGEYPVPLIRRAWEL-GLMNTH---IPE 93
Query: 87 EXXXXXXXXXXHCIAMEEISRASGSVGLSYGAHSN-LCINQLVRHGSPAQKDKYLPKLIS 145
C+ EE+ A G G+ N L ++ G+ QK KYL ++
Sbjct: 94 NCGGLGLGTFDACLISEEL--AYGCTGVQTAIEGNSLGQMPIIIAGNDQQKKKYLGRMTE 151
Query: 146 GEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIK- 204
+ A ++EP AGSDV G+K KA++ YIING KMW TNG A + A++D
Sbjct: 152 EPLMCAYCVTEPGAGSDVAGIKTKAEKKGDEYIINGQKMWITNGGKANWYFLLARSDPDP 211
Query: 205 --AGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKG 260
+K T FI+E PG +K +G R SDT +VFE+ VP ENVL +G G
Sbjct: 212 KAPANKAFTGFIVEADTPGIQIGRKELNMGQRCSDTRGIVFEDVKVPKENVLIGDGAG 269
>pdb|1EGE|A Chain A, Structure Of T255e, E376g Mutant Of Human Medium Chain
Acyl- Coa Dehydrogenase
pdb|1EGE|B Chain B, Structure Of T255e, E376g Mutant Of Human Medium Chain
Acyl- Coa Dehydrogenase
pdb|1EGE|C Chain C, Structure Of T255e, E376g Mutant Of Human Medium Chain
Acyl- Coa Dehydrogenase
pdb|1EGE|D Chain D, Structure Of T255e, E376g Mutant Of Human Medium Chain
Acyl- Coa Dehydrogenase
pdb|1T9G|A Chain A, Structure Of The Human Mcad:etf Complex
pdb|1T9G|B Chain B, Structure Of The Human Mcad:etf Complex
pdb|1T9G|C Chain C, Structure Of The Human Mcad:etf Complex
pdb|1T9G|D Chain D, Structure Of The Human Mcad:etf Complex
Length = 396
Score = 124 bits (310), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 84/238 (35%), Positives = 119/238 (50%), Gaps = 12/238 (5%)
Query: 29 SLLFDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDV--NLWKLMGNFNLHGITAPQ 86
S F + Q +F+ + +FARE I P AA D++ +P + W+L G N H P+
Sbjct: 13 SFEFTEQQKEFQATARKFAREEIIPVAAEYDKTGEYPVPLIRRAWEL-GLMNTH---IPE 68
Query: 87 EXXXXXXXXXXHCIAMEEISRASGSVGLSYGAHSN-LCINQLVRHGSPAQKDKYLPKLIS 145
C+ EE+ A G G+ N L ++ G+ QK KYL ++
Sbjct: 69 NCGGLGLGTFDACLISEEL--AYGCTGVQTAIEGNSLGQMPIIIAGNDQQKKKYLGRMTE 126
Query: 146 GEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIK- 204
+ A ++EP AGSDV G+K KA++ YIING KMW TNG A + A++D
Sbjct: 127 EPLMCAYCVTEPGAGSDVAGIKTKAEKKGDEYIINGQKMWITNGGKANWYFLLARSDPDP 186
Query: 205 --AGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKG 260
+K T FI+E PG +K +G R SDT +VFE+ VP ENVL +G G
Sbjct: 187 KAPANKAFTGFIVEADTPGIQIGRKELNMGQRCSDTRGIVFEDVKVPKENVLIGDGAG 244
>pdb|1EGD|A Chain A, Structure Of T255e, E376g Mutant Of Human Medium Chain
Acyl- Coa Dehydrogenase
pdb|1EGD|B Chain B, Structure Of T255e, E376g Mutant Of Human Medium Chain
Acyl- Coa Dehydrogenase
pdb|1EGD|C Chain C, Structure Of T255e, E376g Mutant Of Human Medium Chain
Acyl- Coa Dehydrogenase
pdb|1EGD|D Chain D, Structure Of T255e, E376g Mutant Of Human Medium Chain
Acyl- Coa Dehydrogenase
pdb|1EGC|A Chain A, Structure Of T255e, E376g Mutant Of Human Medium Chain
Acyl- Coa Dehydrogenase Complexed With Octanoyl-Coa
pdb|1EGC|B Chain B, Structure Of T255e, E376g Mutant Of Human Medium Chain
Acyl- Coa Dehydrogenase Complexed With Octanoyl-Coa
pdb|1EGC|C Chain C, Structure Of T255e, E376g Mutant Of Human Medium Chain
Acyl- Coa Dehydrogenase Complexed With Octanoyl-Coa
pdb|1EGC|D Chain D, Structure Of T255e, E376g Mutant Of Human Medium Chain
Acyl- Coa Dehydrogenase Complexed With Octanoyl-Coa
Length = 396
Score = 123 bits (309), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 84/238 (35%), Positives = 119/238 (50%), Gaps = 12/238 (5%)
Query: 29 SLLFDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDV--NLWKLMGNFNLHGITAPQ 86
S F + Q +F+ + +FARE I P AA D++ +P + W+L G N H P+
Sbjct: 13 SFEFTEQQKEFQATARKFAREEIIPVAAEYDKTGEYPVPLIRRAWEL-GLMNTH---IPE 68
Query: 87 EXXXXXXXXXXHCIAMEEISRASGSVGLSYGAHSN-LCINQLVRHGSPAQKDKYLPKLIS 145
C+ EE+ A G G+ N L ++ G+ QK KYL ++
Sbjct: 69 NCGGLGLGTFDACLISEEL--AYGCTGVQTAIEGNSLGQMPIIIAGNDQQKKKYLGRMTE 126
Query: 146 GEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIK- 204
+ A ++EP AGSDV G+K KA++ YIING KMW TNG A + A++D
Sbjct: 127 EPLMCAYCVTEPGAGSDVAGIKTKAEKKGDEYIINGQKMWITNGGKANWYFLLARSDPDP 186
Query: 205 --AGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKG 260
+K T FI+E PG +K +G R SDT +VFE+ VP ENVL +G G
Sbjct: 187 KAPANKAFTGFIVEADTPGIQIGRKELNMGQRCSDTRGIVFEDVKVPKENVLIGDGAG 244
>pdb|3R7K|A Chain A, Crystal Structure Of A Probable Acyl Coa Dehydrogenase
From Mycobacterium Abscessus Atcc 19977 DSM 44196
pdb|3R7K|B Chain B, Crystal Structure Of A Probable Acyl Coa Dehydrogenase
From Mycobacterium Abscessus Atcc 19977 DSM 44196
pdb|3R7K|C Chain C, Crystal Structure Of A Probable Acyl Coa Dehydrogenase
From Mycobacterium Abscessus Atcc 19977 DSM 44196
pdb|3R7K|D Chain D, Crystal Structure Of A Probable Acyl Coa Dehydrogenase
From Mycobacterium Abscessus Atcc 19977 DSM 44196
Length = 403
Score = 115 bits (289), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 67/216 (31%), Positives = 112/216 (51%), Gaps = 4/216 (1%)
Query: 46 FARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEXXXXXXXXXXHCIAMEEI 105
F IAP+ A + P+D++L L GI P+E + E I
Sbjct: 43 FVEREIAPKLAEWEHVGEIPRDLHL--NAAEVGLLGIGFPEEVGGSGGNAIDSALVTEAI 100
Query: 106 SRASGSVGLSYGAHSN-LCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVV 164
A GS G+ ++ + + + +GS A ++Y+ ++G+ +G+L ++EP AGSDV
Sbjct: 101 LAAGGSTGVCAALFTHGIALPHIAANGSDALIERYVRPTLAGKMIGSLGVTEPGAGSDVA 160
Query: 165 GMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKAGSKGITAFIIEKGMPGFST 224
++ +A R Y++NG K + T+G A + +T G G++ +I+K PGF
Sbjct: 161 NLRTRAVREGDTYVVNGAKTFITSGVRADFVTTAVRTG-GPGYGGVSLLVIDKNSPGFEV 219
Query: 225 AQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKG 260
+++LDK+G R SDT EL F + VP +N++G E G
Sbjct: 220 SRRLDKMGWRCSDTAELSFVDVRVPADNLVGAENSG 255
>pdb|3OIB|A Chain A, Crystal Structure Of A Putative Acyl-Coa Dehydrogenase
From Mycobacterium Smegmatis, Iodide Soak
pdb|3OIB|B Chain B, Crystal Structure Of A Putative Acyl-Coa Dehydrogenase
From Mycobacterium Smegmatis, Iodide Soak
pdb|3P4T|A Chain A, Crystal Structure Of A Putative Acyl-Coa Dehydrogenase
From Mycobacterium Smegmatis
pdb|3P4T|B Chain B, Crystal Structure Of A Putative Acyl-Coa Dehydrogenase
From Mycobacterium Smegmatis
Length = 403
Score = 114 bits (286), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 70/236 (29%), Positives = 118/236 (50%), Gaps = 6/236 (2%)
Query: 27 STSLLFDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQ 86
S S+ + +++V FA + P A +++ P++++ + L G P+
Sbjct: 21 SMSIWTTAEREALRKTVRAFAEREVLPHAHEWERAGEIPRELH--RKAAELGLLGAGFPE 78
Query: 87 EXXXXXXXXXXHCIAMEEISRASGSVGLSYGA--HSNLCINQLVRHGSPAQKDKYLPKLI 144
+ + EE+ A GS G Y + + + ++ G D Y+ +
Sbjct: 79 DAGGSGGDGADPVVICEEMHYA-GSPGGVYASLFTCGIAVPHMIASGDQRLIDTYVRPTL 137
Query: 145 SGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIK 204
GE +GALA++EP GSDV ++ +AD Y+ING K + T+G A +V A+T
Sbjct: 138 RGEKIGALAITEPGGGSDVGHLRTRADLDGDHYVINGAKTYITSGVRADYVVTAARTG-G 196
Query: 205 AGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKG 260
G+ G++ +++KG PGF +KLDK+G R SDT EL + + VP N++G E G
Sbjct: 197 PGAGGVSLIVVDKGTPGFEVTRKLDKMGWRSSDTAELSYTDVRVPVANLVGSENTG 252
>pdb|3SWO|A Chain A, Crystal Structure Of A Glutaryl-Coa Dehydrogenase From
Mycobacterium Smegmatis In Complex With Fadh2
pdb|3SWO|B Chain B, Crystal Structure Of A Glutaryl-Coa Dehydrogenase From
Mycobacterium Smegmatis In Complex With Fadh2
pdb|3SWO|C Chain C, Crystal Structure Of A Glutaryl-Coa Dehydrogenase From
Mycobacterium Smegmatis In Complex With Fadh2
pdb|3SWO|D Chain D, Crystal Structure Of A Glutaryl-Coa Dehydrogenase From
Mycobacterium Smegmatis In Complex With Fadh2
Length = 399
Score = 110 bits (275), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 66/222 (29%), Positives = 106/222 (47%), Gaps = 8/222 (3%)
Query: 28 TSLLFDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQE 87
T L D + +V QF + P +S + P + L K GN + G+ Q
Sbjct: 22 TDRLLDQDERDIAATVRQFVDTRLKPNVEGWFESATLPSE--LAKEFGNLGVLGMHL-QG 78
Query: 88 XXXXXXXXXXHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGE 147
+ +A E+ +L + + R+GS QK+++LP+L +G+
Sbjct: 79 YGCAGTNAVSYGLACMELEAGDSGFRSFVSVQGSLSMFSIYRYGSEEQKNEWLPRLAAGD 138
Query: 148 HVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKAGS 207
+G ++EP+ GS+ GM+ +A R +I+NG KMW TNG +A V+A+TD
Sbjct: 139 AIGCFGLTEPDFGSNPAGMRTRARRDGSDWILNGTKMWITNGNLADVATVWAQTD----- 193
Query: 208 KGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVP 249
GI F++ PGF+ + KL +R S T ELV +N +P
Sbjct: 194 DGIRGFLVPTDTPGFTANEIHRKLSLRASVTSELVLDNVRLP 235
>pdb|2IX6|A Chain A, Short Chain Specific Acyl-Coa Oxidase From Arabidopsis
Thaliana, Acx4
pdb|2IX6|B Chain B, Short Chain Specific Acyl-Coa Oxidase From Arabidopsis
Thaliana, Acx4
pdb|2IX6|C Chain C, Short Chain Specific Acyl-Coa Oxidase From Arabidopsis
Thaliana, Acx4
pdb|2IX6|D Chain D, Short Chain Specific Acyl-Coa Oxidase From Arabidopsis
Thaliana, Acx4
pdb|2IX6|E Chain E, Short Chain Specific Acyl-Coa Oxidase From Arabidopsis
Thaliana, Acx4
pdb|2IX6|F Chain F, Short Chain Specific Acyl-Coa Oxidase From Arabidopsis
Thaliana, Acx4
Length = 449
Score = 105 bits (263), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 59/167 (35%), Positives = 89/167 (53%), Gaps = 7/167 (4%)
Query: 98 HCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEP 157
+ IA EI+R S HS+L + + GS AQK+KYLP L V A++EP
Sbjct: 118 NAIATAEIARVDASCSTFILVHSSLGMLTIALCGSEAQKEKYLPSLAQLNTVACWALTEP 177
Query: 158 NAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKAGSKGITAFIIEK 217
+ GSD G+ A +V+GG+ ING K W N A L+++A+ + I FI++K
Sbjct: 178 DNGSDASGLGTTATKVEGGWKINGQKRWIGNSTFADLLIIFARNTT---TNQINGFIVKK 234
Query: 218 GMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGCNSF 264
PG + +K+G+R +++ +N FVP+E+ L G NSF
Sbjct: 235 DAPGLKATKIPNKIGLRMVQNGDILLQNVFVPDEDRL----PGVNSF 277
>pdb|2IX5|A Chain A, Short Chain Specific Acyl-Coa Oxidase From Arabidopsis
Thaliana, Acx4 In Complex With Acetoacetyl-Coa
pdb|2IX5|B Chain B, Short Chain Specific Acyl-Coa Oxidase From Arabidopsis
Thaliana, Acx4 In Complex With Acetoacetyl-Coa
pdb|2IX5|C Chain C, Short Chain Specific Acyl-Coa Oxidase From Arabidopsis
Thaliana, Acx4 In Complex With Acetoacetyl-Coa
pdb|2IX5|D Chain D, Short Chain Specific Acyl-Coa Oxidase From Arabidopsis
Thaliana, Acx4 In Complex With Acetoacetyl-Coa
Length = 436
Score = 105 bits (262), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 59/167 (35%), Positives = 89/167 (53%), Gaps = 7/167 (4%)
Query: 98 HCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEP 157
+ IA EI+R S HS+L + + GS AQK+KYLP L V A++EP
Sbjct: 118 NAIATAEIARVDASCSTFILVHSSLGMLTIALCGSEAQKEKYLPSLAQLNTVACWALTEP 177
Query: 158 NAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKAGSKGITAFIIEK 217
+ GSD G+ A +V+GG+ ING K W N A L+++A+ + I FI++K
Sbjct: 178 DNGSDASGLGTTATKVEGGWKINGQKRWIGNSTFADLLIIFARNTT---TNQINGFIVKK 234
Query: 218 GMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGCNSF 264
PG + +K+G+R +++ +N FVP+E+ L G NSF
Sbjct: 235 DAPGLKATKIPNKIGLRMVQNGDILLQNVFVPDEDRL----PGVNSF 277
>pdb|3SF6|A Chain A, Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Mycobacterium Smegmatis
Length = 403
Score = 105 bits (262), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 53/137 (38%), Positives = 75/137 (54%), Gaps = 9/137 (6%)
Query: 131 GSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGP 190
GS QKD++LP + SG +G ++EP+ GSD GM+ +A R +I+ G KMW TNG
Sbjct: 127 GSDEQKDQWLPDMASGHRIGCFGLTEPDHGSDPAGMRTRATRSGDDWILTGTKMWITNGS 186
Query: 191 VAQTLVVYAKTDIKAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPN 250
VA VV+A+TD +GI F++ PGF+ K+ +R S T ELV + +P+
Sbjct: 187 VADVAVVWARTD-----EGIRGFVVPTDTPGFTANTIKSKMSLRASVTSELVLDGVRLPD 241
Query: 251 ENVLGQEGKGCNSFGEP 267
L G S G P
Sbjct: 242 SARL----PGATSLGAP 254
>pdb|1SIQ|A Chain A, The Crystal Structure And Mechanism Of Human Glutaryl-Coa
Dehydrogenase
Length = 392
Score = 103 bits (256), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 66/234 (28%), Positives = 112/234 (47%), Gaps = 13/234 (5%)
Query: 36 QLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEXXXXXXXX 95
++ +++ + +E + PR +++ F +++ MG + G T
Sbjct: 18 EILIRDTFRTYCQERLMPRILLANRNEVFHREI--ISEMGELGVLGPTIKGYGCAGVSSV 75
Query: 96 XXHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMS 155
+A E+ R + S+L ++ + +GS Q+ KYLP+L GE +G ++
Sbjct: 76 AYGLLA-RELERVDSGYRSAMSVQSSLVMHPIYAYGSEEQRQKYLPQLAKGELLGCFGLT 134
Query: 156 EPNAGSDVVGMKCKA--DRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKAGSKGITAF 213
EPN+GSD M+ +A + + Y +NG K W TN P+A VV+A+ + I F
Sbjct: 135 EPNSGSDPSSMETRAHYNSSNKSYTLNGTKTWITNSPMADLFVVWARCE----DGCIRGF 190
Query: 214 IIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGCNSFGEP 267
++EKGM G S + K +R S T ++ + VP ENVL G +S G P
Sbjct: 191 LLEKGMRGLSAPRIQGKFSLRASATGMIIMDGVEVPEENVL----PGASSLGGP 240
>pdb|1SIR|A Chain A, The Crystal Structure And Mechanism Of Human Glutaryl-Coa
Dehydrogenase
pdb|2R0N|A Chain A, The Effect Of A Glu370asp Mutation In Glutaryl-Coa
Dehydrogenase On Proton Transfer To The Dienolate
Intermediate
Length = 394
Score = 102 bits (255), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 66/234 (28%), Positives = 112/234 (47%), Gaps = 13/234 (5%)
Query: 36 QLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEXXXXXXXX 95
++ +++ + +E + PR +++ F +++ MG + G T
Sbjct: 20 EILIRDTFRTYCQERLMPRILLANRNEVFHREI--ISEMGELGVLGPTIKGYGCAGVSSV 77
Query: 96 XXHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMS 155
+A E+ R + S+L ++ + +GS Q+ KYLP+L GE +G ++
Sbjct: 78 AYGLLA-RELERVDSGYRSAMSVQSSLVMHPIYAYGSEEQRQKYLPQLAKGELLGCFGLT 136
Query: 156 EPNAGSDVVGMKCKA--DRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKAGSKGITAF 213
EPN+GSD M+ +A + + Y +NG K W TN P+A VV+A+ + I F
Sbjct: 137 EPNSGSDPSSMETRAHYNSSNKSYTLNGTKTWITNSPMADLFVVWARCE----DGCIRGF 192
Query: 214 IIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGCNSFGEP 267
++EKGM G S + K +R S T ++ + VP ENVL G +S G P
Sbjct: 193 LLEKGMRGLSAPRIQGKFSLRASATGMIIMDGVEVPEENVL----PGASSLGGP 242
>pdb|2R0M|A Chain A, The Effect Of A Glu370asp Mutation In Glutaryl-Coa
Dehydrogenase On Proton Transfer To The Dienolate
Intermediate
Length = 394
Score = 102 bits (255), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 66/234 (28%), Positives = 112/234 (47%), Gaps = 13/234 (5%)
Query: 36 QLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEXXXXXXXX 95
++ +++ + +E + PR +++ F +++ MG + G T
Sbjct: 20 EILIRDTFRTYCQERLMPRILLANRNEVFHREI--ISEMGELGVLGPTIKGYGCAGVSSV 77
Query: 96 XXHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMS 155
+A E+ R + S+L ++ + +GS Q+ KYLP+L GE +G ++
Sbjct: 78 AYGLLA-RELERVDSGYRSAMSVQSSLVMHPIYAYGSEEQRQKYLPQLAKGELLGCFGLT 136
Query: 156 EPNAGSDVVGMKCKA--DRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKAGSKGITAF 213
EPN+GSD M+ +A + + Y +NG K W TN P+A VV+A+ + I F
Sbjct: 137 EPNSGSDPSSMETRAHYNSSNKSYTLNGTKTWITNSPMADLFVVWARCE----DGCIRGF 192
Query: 214 IIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGCNSFGEP 267
++EKGM G S + K +R S T ++ + VP ENVL G +S G P
Sbjct: 193 LLEKGMRGLSAPRIQGKFSLRASATGMIIMDGVEVPEENVL----PGASSLGGP 242
>pdb|2EBA|A Chain A, Crystal Structure Of The Putative Glutaryl-coa
Dehydrogenase From Thermus Thermophilus
pdb|2EBA|C Chain C, Crystal Structure Of The Putative Glutaryl-coa
Dehydrogenase From Thermus Thermophilus
pdb|2EBA|D Chain D, Crystal Structure Of The Putative Glutaryl-coa
Dehydrogenase From Thermus Thermophilus
pdb|2EBA|E Chain E, Crystal Structure Of The Putative Glutaryl-coa
Dehydrogenase From Thermus Thermophilus
pdb|2EBA|F Chain F, Crystal Structure Of The Putative Glutaryl-coa
Dehydrogenase From Thermus Thermophilus
pdb|2EBA|G Chain G, Crystal Structure Of The Putative Glutaryl-coa
Dehydrogenase From Thermus Thermophilus
pdb|2EBA|H Chain H, Crystal Structure Of The Putative Glutaryl-coa
Dehydrogenase From Thermus Thermophilus
pdb|2EBA|I Chain I, Crystal Structure Of The Putative Glutaryl-coa
Dehydrogenase From Thermus Thermophilus
Length = 385
Score = 102 bits (255), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 63/227 (27%), Positives = 101/227 (44%), Gaps = 7/227 (3%)
Query: 25 FSSTSLLFDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITA 84
F + L + + +++ +F + P + + FP +L G T
Sbjct: 4 FYALEDLLTPEEKEVQKAARRFLEKEALPHIRDWWEEGVFP--THLIPRFAELGFLGPTL 61
Query: 85 PQEXXXXXXXXXXHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLI 144
P E + + E+ R + S+L + + +GS QK ++LPKL
Sbjct: 62 PPEYGGAGVSSAAYGLICYELERVDSGLRSFVSVQSSLVMYPIYAYGSEEQKREFLPKLA 121
Query: 145 SGEHVGALAMSEPNAGSDVVG-MKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDI 203
GE VG ++EP+ GSD G MK +A R +++NG KMW TNG +A V++AK +
Sbjct: 122 RGEMVGCFGLTEPDGGSDPYGNMKTRARREGDTWVLNGTKMWITNGNLAHLAVIWAKDE- 180
Query: 204 KAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPN 250
+ F++ PGF + K+ +R S T ELV E VP
Sbjct: 181 ---GGEVLGFLVPTDTPGFQAREVKRKMSLRASVTSELVLEEVRVPE 224
>pdb|1RX0|A Chain A, Crystal Structure Of Isobutyryl-Coa Dehydrogenase
Complexed With SubstrateLIGAND.
pdb|1RX0|B Chain B, Crystal Structure Of Isobutyryl-Coa Dehydrogenase
Complexed With SubstrateLIGAND.
pdb|1RX0|C Chain C, Crystal Structure Of Isobutyryl-Coa Dehydrogenase
Complexed With SubstrateLIGAND.
pdb|1RX0|D Chain D, Crystal Structure Of Isobutyryl-Coa Dehydrogenase
Complexed With SubstrateLIGAND
Length = 393
Score = 101 bits (251), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 64/232 (27%), Positives = 105/232 (45%), Gaps = 4/232 (1%)
Query: 29 SLLFDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEX 88
S+ ++ Q +F++ FA +AP A DQ FP DV + G+ +
Sbjct: 16 SMGLNEEQKEFQKVAFDFAAREMAPNMAEWDQKELFPVDV--MRKAAQLGFGGVYIQTDV 73
Query: 89 XXXXXXXXXHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEH 148
+ E ++ S H N+C + G+ Q+ K+ P L + E
Sbjct: 74 GGSGLSRLDTSVIFEALATGCTSTTAYISIH-NMCAWMIDSFGNEEQRHKFCPPLCTMEK 132
Query: 149 VGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKAGSK 208
+ ++EP +GSD + A + YI+NG+K + + + VV +T G K
Sbjct: 133 FASYCLTEPGSGSDAASLLTSAKKQGDHYILNGSKAFISGAGESDIYVVMCRTG-GPGPK 191
Query: 209 GITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKG 260
GI+ ++EKG PG S +K K+G T ++FE+C VP N +G EG+G
Sbjct: 192 GISCIVVEKGTPGLSFGKKEKKVGWNSQPTRAVIFEDCAVPVANRIGSEGQG 243
>pdb|3M9V|A Chain A, X-Ray Structure Of A Kijd3 In Complex With Dtdp
Length = 439
Score = 66.6 bits (161), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 50/88 (56%)
Query: 175 GGYIINGNKMWCTNGPVAQTLVVYAKTDIKAGSKGITAFIIEKGMPGFSTAQKLDKLGMR 234
GG++++G K + PV V+ A+TD G + + ++ + PGF+ D LGMR
Sbjct: 161 GGWLLSGRKTLVSMAPVGTHFVINARTDGTDGPPRLASPVVTRDTPGFTVLDNWDGLGMR 220
Query: 235 GSDTCELVFENCFVPNENVLGQEGKGCN 262
S T ++VF++C +P ++VL ++ G
Sbjct: 221 ASGTVDIVFDDCPIPADHVLMRDPVGAR 248
>pdb|3MXL|A Chain A, Crystal Structure Of Nitrososynthase From Micromonospora
Carbonacea Var. Africana
pdb|3MXL|B Chain B, Crystal Structure Of Nitrososynthase From Micromonospora
Carbonacea Var. Africana
pdb|3MXL|C Chain C, Crystal Structure Of Nitrososynthase From Micromonospora
Carbonacea Var. Africana
pdb|3MXL|D Chain D, Crystal Structure Of Nitrososynthase From Micromonospora
Carbonacea Var. Africana
Length = 395
Score = 65.5 bits (158), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 52/211 (24%), Positives = 92/211 (43%), Gaps = 13/211 (6%)
Query: 50 NIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEXXXXXXXXXXH-CIAMEEISRA 108
I+ AA+ D++ +FP V ++ L G T P E A+ ++ A
Sbjct: 26 RISAEAADRDRTGTFP--VEAFEQFAKLGLMGATVPAELGGLGLTRLYDVATALMRLAEA 83
Query: 109 SGSVGLSYGAH--SNLCINQLVRHGSP---AQKDKYLPKLISGEHVGALAMSEPNAGSDV 163
S L++ L + +HG+P A ++ L + GE A+ +
Sbjct: 84 DASTALAWHVQLSRGLTLTYEWQHGTPPVRAMAERLLRAMAEGEAAVCGALKDAPG---- 139
Query: 164 VGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKAGSKGITAFIIEKGMPGFS 223
V + +D GG++++G K+ + P+A V+A+ GS + ++ + PG +
Sbjct: 140 VVTELHSDGA-GGWLLSGRKVLVSMAPIATHFFVHAQRRDDDGSVFLAVPVVHRDAPGLT 198
Query: 224 TAQKLDKLGMRGSDTCELVFENCFVPNENVL 254
D LGMR S T E+VF+ C V + +L
Sbjct: 199 VLDNWDGLGMRASGTLEVVFDRCPVRADELL 229
>pdb|2WBI|A Chain A, Crystal Structure Of Human Acyl-Coa Dehydrogenase 11
pdb|2WBI|B Chain B, Crystal Structure Of Human Acyl-Coa Dehydrogenase 11
Length = 428
Score = 55.1 bits (131), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 62/139 (44%), Gaps = 8/139 (5%)
Query: 130 HGSPAQKDKYLPKLISGEHVGALAMSEPN-AGSDVVGMKCKADRVDGGYIINGNKMWCTN 188
+GS QK ++L L+ G M+EP+ A SD ++C R + Y+ING K W +
Sbjct: 130 YGSEEQKKQWLEPLLQGNITSCFCMTEPDVASSDATNIECSIQRDEDSYVINGKKWWSSG 189
Query: 189 G--PVAQTLVVYAKTDIKAGS--KGITAFIIEKGMPGFSTAQKLDKLGMRGS---DTCEL 241
P + +V +T + S K + ++ PG + L G + E+
Sbjct: 190 AGNPKCKIAIVLGRTQNTSLSRHKQHSMILVPMNTPGVKIIRPLSVFGYTDNFHGGHFEI 249
Query: 242 VFENCFVPNENVLGQEGKG 260
F VP N++ EG+G
Sbjct: 250 HFNQVRVPATNLILGEGRG 268
>pdb|4DOY|A Chain A, Crystal Structure Of Dibenzothiophene Desulfurization
Enzyme C
pdb|4DOY|B Chain B, Crystal Structure Of Dibenzothiophene Desulfurization
Enzyme C
pdb|4DOY|C Chain C, Crystal Structure Of Dibenzothiophene Desulfurization
Enzyme C
pdb|4DOY|D Chain D, Crystal Structure Of Dibenzothiophene Desulfurization
Enzyme C
pdb|4DOY|E Chain E, Crystal Structure Of Dibenzothiophene Desulfurization
Enzyme C
pdb|4DOY|F Chain F, Crystal Structure Of Dibenzothiophene Desulfurization
Enzyme C
pdb|4DOY|G Chain G, Crystal Structure Of Dibenzothiophene Desulfurization
Enzyme C
pdb|4DOY|H Chain H, Crystal Structure Of Dibenzothiophene Desulfurization
Enzyme C
Length = 437
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 46/157 (29%), Positives = 72/157 (45%), Gaps = 7/157 (4%)
Query: 102 MEEISRASGSVGLSYGAH-SNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAG 160
+ EI+ A GS+G +G H +N + +L+ GS Q++ ++ A SE N
Sbjct: 100 VREIAAADGSLGHLFGYHLTNAPMIELI--GSQEQEEHLYTQIAQNNWWTGNASSENN-- 155
Query: 161 SDVVGMKCKADRV-DGGYIINGNKMWCTNGPVAQTLVVYAKTDIKAGSKG-ITAFIIEKG 218
S V+ K A DGGY++NG K +C+ + L V+ + +G I A I
Sbjct: 156 SHVLDWKVSATPTEDGGYVLNGTKHFCSGAKGSDLLFVFGVVQDDSPQQGAIIAAAIPTS 215
Query: 219 MPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLG 255
G + +GMR +D+ F N V + VLG
Sbjct: 216 RAGVTPNDDWAAIGMRQTDSGSTDFHNVKVEPDEVLG 252
>pdb|1R2J|A Chain A, Fkbi For Biosynthesis Of Methoxymalonyl Extender Unit Of
Fk520 Polyketide Immunosuppresant
Length = 366
Score = 52.4 bits (124), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 37/131 (28%), Positives = 62/131 (47%), Gaps = 7/131 (5%)
Query: 129 RHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGY-IINGNKMWCT 187
R G Q+ +L +L SG+ + A+ SE AGSD+ M+ + R+DG +++G+K+W T
Sbjct: 87 RLGDAGQRATFLKELTSGK-LAAVGFSERQAGSDLSAMRTRV-RLDGDTAVVDGHKVWTT 144
Query: 188 NGPVAQTLVVYAKTDIKAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCF 247
A LVV+ + +G+ ++ PG + G R + +L +
Sbjct: 145 AAAYADHLVVFGLQEDGSGA----VVVVPADTPGVRVERVPKPSGCRAAGHADLHLDQVR 200
Query: 248 VPNENVLGQEG 258
VP VL G
Sbjct: 201 VPAGAVLAGSG 211
>pdb|3DJL|A Chain A, Crystal Structure Of Alkylation Response Protein E. Coli
Aidb
pdb|3U33|A Chain A, Crystal Structure Of The E. Coli Adaptive Response Protein
Aidb In The Space Group P3(2)
pdb|3U33|B Chain B, Crystal Structure Of The E. Coli Adaptive Response Protein
Aidb In The Space Group P3(2)
pdb|3U33|C Chain C, Crystal Structure Of The E. Coli Adaptive Response Protein
Aidb In The Space Group P3(2)
pdb|3U33|D Chain D, Crystal Structure Of The E. Coli Adaptive Response Protein
Aidb In The Space Group P3(2)
pdb|3U33|E Chain E, Crystal Structure Of The E. Coli Adaptive Response Protein
Aidb In The Space Group P3(2)
pdb|3U33|F Chain F, Crystal Structure Of The E. Coli Adaptive Response Protein
Aidb In The Space Group P3(2)
pdb|3U33|G Chain G, Crystal Structure Of The E. Coli Adaptive Response Protein
Aidb In The Space Group P3(2)
pdb|3U33|H Chain H, Crystal Structure Of The E. Coli Adaptive Response Protein
Aidb In The Space Group P3(2)
pdb|3U33|I Chain I, Crystal Structure Of The E. Coli Adaptive Response Protein
Aidb In The Space Group P3(2)
pdb|3U33|J Chain J, Crystal Structure Of The E. Coli Adaptive Response Protein
Aidb In The Space Group P3(2)
pdb|3U33|K Chain K, Crystal Structure Of The E. Coli Adaptive Response Protein
Aidb In The Space Group P3(2)
pdb|3U33|L Chain L, Crystal Structure Of The E. Coli Adaptive Response Protein
Aidb In The Space Group P3(2)
Length = 541
Score = 51.6 bits (122), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 42/139 (30%), Positives = 72/139 (51%), Gaps = 19/139 (13%)
Query: 132 SPAQKDKYLPKLISGEH----VGALAMSEPNAGSDVVGMKCKADRV-DGGYIINGNKMWC 186
+P D+Y L+ G + + M+E GSDV+ +A+R+ DG Y + G+K W
Sbjct: 158 TPLLSDRYDSHLLPGGQKRGLLIGMGMTEKQGGSDVMSNTTRAERLEDGSYRLVGHK-WF 216
Query: 187 TNGPVAQTLVVYAKTDIKAGSKGITAFIIEKGMP-GFSTAQKL----DKLGMRGSDTCEL 241
+ P + +V A+T + G++ F + + +P G A +L DKLG R + +CE+
Sbjct: 217 FSVPQSDAHLVLAQT-----AGGLSCFFVPRFLPDGQRNAIRLERLKDKLGNRSNASCEV 271
Query: 242 VFENCFVPNENVLGQEGKG 260
F++ +LG EG+G
Sbjct: 272 EFQDAI---GWLLGLEGEG 287
>pdb|4HR3|A Chain A, Structure Of A Putative Acyl-Coa Dehydrogenase From
Mycobacterium Abscessus
Length = 415
Score = 48.1 bits (113), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 39/140 (27%), Positives = 60/140 (42%), Gaps = 6/140 (4%)
Query: 127 LVRHGSPAQKDKYLPKLISGEHVGALAMSEPN-AGSDVVGMKCKADRVDGGYIINGNKMW 185
L R+GS QK+ +L L+ G+ A M+EP+ A SD M A +ING K W
Sbjct: 121 LHRYGSQEQKEVWLEPLLEGDIRSAFCMTEPDVASSDATNMAATAVVEGDEVVINGRKWW 180
Query: 186 CT--NGPVAQTLVVYAKTDIKAGSKGITAFI-IEKGMPGFSTAQKLDKLGMRGSDTCELV 242
T P + ++ TD A + + + PG + + L +G V
Sbjct: 181 STGVGHPDCKVIIFMGLTDPNAHRYARHSMVLVPMDTPGITVERMLPTMGFYDEPGGHGV 240
Query: 243 --FENCFVPNENVLGQEGKG 260
F+N +P + + GKG
Sbjct: 241 VSFDNVRLPADAFIAGPGKG 260
>pdb|2FON|A Chain A, X-Ray Crystal Structure Of Leacx1, An Acyl-Coa Oxidase
From Lycopersicon Esculentum (Tomato)
pdb|2FON|B Chain B, X-Ray Crystal Structure Of Leacx1, An Acyl-Coa Oxidase
From Lycopersicon Esculentum (Tomato)
pdb|2FON|C Chain C, X-Ray Crystal Structure Of Leacx1, An Acyl-Coa Oxidase
From Lycopersicon Esculentum (Tomato)
Length = 683
Score = 41.2 bits (95), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 38/154 (24%), Positives = 66/154 (42%), Gaps = 18/154 (11%)
Query: 119 HSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKA--DRVDGG 176
H + I + G+ Q++K+LP + +G A +E GS+V G++ A D
Sbjct: 121 HWGMFIPAIKGQGTDKQQEKWLPLAYKMQIIGCYAQTELGHGSNVQGLETTATFDPQTDE 180
Query: 177 YIIN-----GNKMWCTN-GPVAQTLVVYAKTDIKAGSKGITAFIIE-------KGMPGFS 223
++I+ +K W G V+ VVYA+ G+ FI++ K +PG +
Sbjct: 181 FVIHSPTLTSSKWWPGGLGKVSTHAVVYARLITDGKDYGVNGFIVQLRSLEDHKPLPGVT 240
Query: 224 TAQKLDKLG---MRGSDTCELVFENCFVPNENVL 254
K G D L F++ +P + +L
Sbjct: 241 VGDIGMKFGNGAYNSMDNGVLSFDHVRIPRDQML 274
>pdb|2C0U|A Chain A, Crystal Structure Of A Covalent Complex Of Nitroalkane
Oxidase Trapped During Substrate Turnover
pdb|2C0U|B Chain B, Crystal Structure Of A Covalent Complex Of Nitroalkane
Oxidase Trapped During Substrate Turnover
pdb|2C0U|C Chain C, Crystal Structure Of A Covalent Complex Of Nitroalkane
Oxidase Trapped During Substrate Turnover
pdb|2C0U|D Chain D, Crystal Structure Of A Covalent Complex Of Nitroalkane
Oxidase Trapped During Substrate Turnover
Length = 439
Score = 41.2 bits (95), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 52/96 (54%), Gaps = 8/96 (8%)
Query: 100 IAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGE--HVGALAMSEP 157
I +EE+ + ++ A + L + ++ SP+ ++K+L ISGE + +L SEP
Sbjct: 78 IILEELFAVEPATSITIVA-TALGLXPVILCDSPSLQEKFLKPFISGEGEPLASLXHSEP 136
Query: 158 NAGSDVV-----GMKCKADRVDGGYIINGNKMWCTN 188
N ++ + G++ A +V ++I+G K+W +N
Sbjct: 137 NGTANWLQKGGPGLQTTARKVGNEWVISGEKLWPSN 172
>pdb|2ZAF|A Chain A, Mechanistic And Structural Analyses Of The Roles Of Arg409
And Asp402 In The Reaction Of The Flavoprotein
Nitroalkane Oxidase
pdb|2ZAF|B Chain B, Mechanistic And Structural Analyses Of The Roles Of Arg409
And Asp402 In The Reaction Of The Flavoprotein
Nitroalkane Oxidase
pdb|2ZAF|C Chain C, Mechanistic And Structural Analyses Of The Roles Of Arg409
And Asp402 In The Reaction Of The Flavoprotein
Nitroalkane Oxidase
pdb|2ZAF|D Chain D, Mechanistic And Structural Analyses Of The Roles Of Arg409
And Asp402 In The Reaction Of The Flavoprotein
Nitroalkane Oxidase
Length = 439
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 52/96 (54%), Gaps = 8/96 (8%)
Query: 100 IAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGE--HVGALAMSEP 157
I +EE+ + ++ A + L + ++ SP+ ++K+L ISGE + +L SEP
Sbjct: 78 IILEELFAVEPATSITIVA-TALGLMPVILCDSPSLQEKFLKPFISGEGEPLASLMHSEP 136
Query: 158 NAGSDVV-----GMKCKADRVDGGYIINGNKMWCTN 188
N ++ + G++ A +V ++I+G K+W +N
Sbjct: 137 NGTANWLQKGGPGLQTTARKVGNEWVISGEKLWPSN 172
>pdb|3D9F|A Chain A, Nitroalkane Oxidase: Active Site Mutant S276a Crystallized
With 1- Nitrohexane
pdb|3D9F|B Chain B, Nitroalkane Oxidase: Active Site Mutant S276a Crystallized
With 1- Nitrohexane
pdb|3D9F|C Chain C, Nitroalkane Oxidase: Active Site Mutant S276a Crystallized
With 1- Nitrohexane
pdb|3D9F|D Chain D, Nitroalkane Oxidase: Active Site Mutant S276a Crystallized
With 1- Nitrohexane
Length = 438
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 52/96 (54%), Gaps = 8/96 (8%)
Query: 100 IAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGE--HVGALAMSEP 157
I +EE+ + ++ A + L + ++ SP+ ++K+L ISGE + +L SEP
Sbjct: 77 IILEELFAVEPATSITIVA-TALGLMPVILCDSPSLQEKFLKPFISGEGEPLASLMHSEP 135
Query: 158 NAGSDVV-----GMKCKADRVDGGYIINGNKMWCTN 188
N ++ + G++ A +V ++I+G K+W +N
Sbjct: 136 NGTANWLQKGGPGLQTTARKVGNEWVISGEKLWPSN 171
>pdb|3D9G|A Chain A, Nitroalkane Oxidase: Wild Type Crystallized In A Trapped
State Forming A Cyanoadduct With Fad
pdb|3D9G|B Chain B, Nitroalkane Oxidase: Wild Type Crystallized In A Trapped
State Forming A Cyanoadduct With Fad
pdb|3D9G|C Chain C, Nitroalkane Oxidase: Wild Type Crystallized In A Trapped
State Forming A Cyanoadduct With Fad
pdb|3D9G|D Chain D, Nitroalkane Oxidase: Wild Type Crystallized In A Trapped
State Forming A Cyanoadduct With Fad
Length = 438
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 52/96 (54%), Gaps = 8/96 (8%)
Query: 100 IAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGE--HVGALAMSEP 157
I +EE+ + ++ A + L + ++ SP+ ++K+L ISGE + +L SEP
Sbjct: 77 IILEELFAVEPATSITIVA-TALGLMPVILCDSPSLQEKFLKPFISGEGEPLASLMHSEP 135
Query: 158 NAGSDVV-----GMKCKADRVDGGYIINGNKMWCTN 188
N ++ + G++ A +V ++I+G K+W +N
Sbjct: 136 NGTANWLQKGGPGLQTTARKVGNEWVISGEKLWPSN 171
>pdb|2REH|A Chain A, Mechanistic And Structural Analyses Of The Roles Of Arg409
And Asp402 In The Reaction Of The Flavoprotein
Nitroalkane Oxidase
pdb|2REH|B Chain B, Mechanistic And Structural Analyses Of The Roles Of Arg409
And Asp402 In The Reaction Of The Flavoprotein
Nitroalkane Oxidase
pdb|2REH|C Chain C, Mechanistic And Structural Analyses Of The Roles Of Arg409
And Asp402 In The Reaction Of The Flavoprotein
Nitroalkane Oxidase
pdb|2REH|D Chain D, Mechanistic And Structural Analyses Of The Roles Of Arg409
And Asp402 In The Reaction Of The Flavoprotein
Nitroalkane Oxidase
Length = 439
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 52/96 (54%), Gaps = 8/96 (8%)
Query: 100 IAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGE--HVGALAMSEP 157
I +EE+ + ++ A + L + ++ SP+ ++K+L ISGE + +L SEP
Sbjct: 78 IILEELFAVEPATSITIVA-TALGLMPVILCDSPSLQEKFLKPFISGEGEPLASLMHSEP 136
Query: 158 NAGSDVV-----GMKCKADRVDGGYIINGNKMWCTN 188
N ++ + G++ A +V ++I+G K+W +N
Sbjct: 137 NGTANWLQKGGPGLQTTARKVGNEWVISGEKLWPSN 172
>pdb|2C12|A Chain A, Crystal Structure Of Nitroalkane Oxidase In Complex With
Spermine, A Competitive Inhibitor
pdb|2C12|B Chain B, Crystal Structure Of Nitroalkane Oxidase In Complex With
Spermine, A Competitive Inhibitor
pdb|2C12|C Chain C, Crystal Structure Of Nitroalkane Oxidase In Complex With
Spermine, A Competitive Inhibitor
pdb|2C12|D Chain D, Crystal Structure Of Nitroalkane Oxidase In Complex With
Spermine, A Competitive Inhibitor
pdb|2C12|E Chain E, Crystal Structure Of Nitroalkane Oxidase In Complex With
Spermine, A Competitive Inhibitor
pdb|2C12|F Chain F, Crystal Structure Of Nitroalkane Oxidase In Complex With
Spermine, A Competitive Inhibitor
Length = 439
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 52/96 (54%), Gaps = 8/96 (8%)
Query: 100 IAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGE--HVGALAMSEP 157
I +EE+ + ++ A + L + ++ SP+ ++K+L ISGE + +L SEP
Sbjct: 78 IILEELFAVEPATSITIVA-TALGLMPVILCDSPSLQEKFLKPFISGEGEPLASLMHSEP 136
Query: 158 NAGSDVV-----GMKCKADRVDGGYIINGNKMWCTN 188
N ++ + G++ A +V ++I+G K+W +N
Sbjct: 137 NGTANWLQKGGPGLQTTARKVGNEWVISGEKLWPSN 172
>pdb|3D9D|A Chain A, Nitroalkane Oxidase: Mutant D402n Crystallized With
1-Nitrohexane
pdb|3D9D|B Chain B, Nitroalkane Oxidase: Mutant D402n Crystallized With
1-Nitrohexane
pdb|3D9D|C Chain C, Nitroalkane Oxidase: Mutant D402n Crystallized With
1-Nitrohexane
pdb|3D9D|D Chain D, Nitroalkane Oxidase: Mutant D402n Crystallized With
1-Nitrohexane
pdb|3D9E|A Chain A, Nitroalkane Oxidase: Active Site Mutant D402n Crystallized
With 1- Nitrooctane
pdb|3D9E|B Chain B, Nitroalkane Oxidase: Active Site Mutant D402n Crystallized
With 1- Nitrooctane
pdb|3D9E|C Chain C, Nitroalkane Oxidase: Active Site Mutant D402n Crystallized
With 1- Nitrooctane
pdb|3D9E|D Chain D, Nitroalkane Oxidase: Active Site Mutant D402n Crystallized
With 1- Nitrooctane
pdb|3FCJ|A Chain A, Nitroalkane Oxidase: Mutant402n Crystallized With
Nitroethane
pdb|3FCJ|B Chain B, Nitroalkane Oxidase: Mutant402n Crystallized With
Nitroethane
pdb|3FCJ|C Chain C, Nitroalkane Oxidase: Mutant402n Crystallized With
Nitroethane
pdb|3FCJ|D Chain D, Nitroalkane Oxidase: Mutant402n Crystallized With
Nitroethane
Length = 438
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 52/96 (54%), Gaps = 8/96 (8%)
Query: 100 IAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGE--HVGALAMSEP 157
I +EE+ + ++ A + L + ++ SP+ ++K+L ISGE + +L SEP
Sbjct: 77 IILEELFAVEPATSITIVA-TALGLMPVILCDSPSLQEKFLKPFISGEGEPLASLMHSEP 135
Query: 158 NAGSDVV-----GMKCKADRVDGGYIINGNKMWCTN 188
N ++ + G++ A +V ++I+G K+W +N
Sbjct: 136 NGTANWLQKGGPGLQTTARKVGNEWVISGEKLWPSN 171
>pdb|2RFQ|A Chain A, Crystal Structure Of 3-Hsa Hydroxylase From Rhodococcus
Sp. Rha1
pdb|2RFQ|B Chain B, Crystal Structure Of 3-Hsa Hydroxylase From Rhodococcus
Sp. Rha1
pdb|2RFQ|C Chain C, Crystal Structure Of 3-Hsa Hydroxylase From Rhodococcus
Sp. Rha1
pdb|2RFQ|D Chain D, Crystal Structure Of 3-Hsa Hydroxylase From Rhodococcus
Sp. Rha1
Length = 394
Score = 37.7 bits (86), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 40/83 (48%), Gaps = 4/83 (4%)
Query: 173 VDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKAGSK-GITAFIIEKGMPGFSTAQKLDKL 231
VDGGY +NG W ++G + V IK G +F+I + + + +
Sbjct: 129 VDGGYTVNGAWAW-SSGCDHASWAVLGGPVIKDGRPVDFVSFLIPR--EDYRIDDVWNVV 185
Query: 232 GMRGSDTCELVFENCFVPNENVL 254
G+RG+ + +V E+ FVP VL
Sbjct: 186 GLRGTGSNTVVVEDVFVPTHRVL 208
>pdb|1IS2|A Chain A, Crystal Structure Of Peroxisomal Acyl-coa Oxidase-ii From
Rat Liver
pdb|1IS2|B Chain B, Crystal Structure Of Peroxisomal Acyl-coa Oxidase-ii From
Rat Liver
pdb|2DDH|A Chain A, Crystal Structure Of Acyl-Coa Oxidase Complexed With
3-Oh-Dodecanoate
Length = 661
Score = 35.8 bits (81), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 33/151 (21%), Positives = 61/151 (40%), Gaps = 15/151 (9%)
Query: 119 HSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKA--DRVDGG 176
H + + L+ + Q++++ + E G A +E G+ + G++ A D
Sbjct: 103 HLGMFLPTLLHQATAEQQERFFMPAWNLEITGTYAQTEMGHGTHLRGLETTATYDPKTQE 162
Query: 177 YIINGN-----KMWCTN-GPVAQTLVVYAKTDIKAGSKGITAFII-------EKGMPGFS 223
+I+N K W G + +V A+ + G+ AF++ K +PG +
Sbjct: 163 FILNSPTVTSIKWWPGGLGKTSNHAIVLAQLITQGECYGLHAFVVPIREIGTHKPLPGIT 222
Query: 224 TAQKLDKLGMRGSDTCELVFENCFVPNENVL 254
K G D L +N +P EN+L
Sbjct: 223 VGDIGPKFGYEEMDNGYLKMDNYRIPRENML 253
>pdb|3AFE|A Chain A, Crystal Structure Of The Hsaa Monooxygenase From
M.Tuberculosis
pdb|3AFE|B Chain B, Crystal Structure Of The Hsaa Monooxygenase From
M.Tuberculosis
pdb|3AFE|C Chain C, Crystal Structure Of The Hsaa Monooxygenase From
M.Tuberculosis
pdb|3AFE|D Chain D, Crystal Structure Of The Hsaa Monooxygenase From
M.Tuberculosis
pdb|3AFF|A Chain A, Crystal Structure Of The Hsaa Monooxygenase From M.
Tuberculosis
pdb|3AFF|B Chain B, Crystal Structure Of The Hsaa Monooxygenase From M.
Tuberculosis
Length = 394
Score = 33.9 bits (76), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 38/83 (45%), Gaps = 4/83 (4%)
Query: 173 VDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKAGSK-GITAFIIEKGMPGFSTAQKLDKL 231
VDGGY++NG+ W + A V IK G +F+I + + +
Sbjct: 129 VDGGYLVNGSWNWSSGCDHASWTFVGGPV-IKDGRPVDFGSFLIPRSE--YEIKDVWYVV 185
Query: 232 GMRGSDTCELVFENCFVPNENVL 254
G+RG+ + LV ++ FVP L
Sbjct: 186 GLRGTGSNTLVVKDVFVPRHRFL 208
>pdb|1W07|A Chain A, Arabidopsis Thaliana Acyl-Coa Oxidase 1
pdb|1W07|B Chain B, Arabidopsis Thaliana Acyl-Coa Oxidase 1
Length = 659
Score = 33.5 bits (75), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 36/159 (22%), Positives = 66/159 (41%), Gaps = 18/159 (11%)
Query: 119 HSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKA--DRVDGG 176
H + + + G+ Q+ K+L + +G A +E GS+V G++ A D
Sbjct: 102 HWGMFVPAIKGQGTEEQQKKWLSLANKMQIIGCYAQTELGHGSNVQGLETTATLDPKTDE 161
Query: 177 YIIN-----GNKMWCTN-GPVAQTLVVYAKTDIKAGSKGITAFIIE-------KGMPGFS 223
++I+ +K W G V+ VVYA+ GI FI++ +P +
Sbjct: 162 FVIHTPTQTASKWWPGGLGKVSTHAVVYARLITNGKDYGIHGFIVQLRSLEDHSPLPNIT 221
Query: 224 TAQKLDKLG---MRGSDTCELVFENCFVPNENVLGQEGK 259
K+G D L+F++ +P + +L + K
Sbjct: 222 VGDIGTKMGNGAYNSMDNGFLMFDHVRIPRDQMLMRLSK 260
>pdb|3MKH|A Chain A, Podospora Anserina Nitroalkane Oxidase
pdb|3MKH|B Chain B, Podospora Anserina Nitroalkane Oxidase
pdb|3MKH|C Chain C, Podospora Anserina Nitroalkane Oxidase
pdb|3MKH|D Chain D, Podospora Anserina Nitroalkane Oxidase
Length = 438
Score = 32.3 bits (72), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 34/62 (54%), Gaps = 9/62 (14%)
Query: 135 QKDKYLPKLISGE--HVGALAMSEPNAGSDVV-----GMKCKADRVDGG-YIINGNKMWC 186
Q ++L +SGE + +L SEP ++ + G + A R++G ++ING KMW
Sbjct: 113 QHAEFLAPFLSGEGSPLASLVFSEPGGVANALEKGAPGFQTTA-RLEGDEWVINGEKMWA 171
Query: 187 TN 188
TN
Sbjct: 172 TN 173
>pdb|2OR0|A Chain A, Structural Genomics, The Crystal Structure Of A Putative
Hydroxylase From Rhodococcus Sp. Rha1
pdb|2OR0|B Chain B, Structural Genomics, The Crystal Structure Of A Putative
Hydroxylase From Rhodococcus Sp. Rha1
Length = 414
Score = 31.6 bits (70), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 34/149 (22%), Positives = 56/149 (37%), Gaps = 23/149 (15%)
Query: 144 ISGEHVGALAMSEPNAGSDVVGMKCK------------ADRVDGGYIINGNKMWCTNGPV 191
I G H LA ++P ++ G A VDGGY++ G W +
Sbjct: 101 IVGVHPWELAFADPQVQEEIWGEDNDTWXASPYAPXGVATPVDGGYVLKGR--WSFSSGT 158
Query: 192 AQTLVVYAKTDIKAGSKGI-TAFIIEKGMPGFS---TAQKLDKLGMRGSDTCELVFENCF 247
+ + G GI T + +P D +G+RG+ + +L+ + F
Sbjct: 159 DHCQWAFLGAXVGDGEGGIATPSSLHVILPRTDYQIVEDTWDVIGLRGTGSKDLIVDGAF 218
Query: 248 VPNENVLG----QEGKGCNSFGEPK-IFN 271
VP L +G+ G P+ +FN
Sbjct: 219 VPGYRTLNAAKVXDGRAQKEAGRPEPLFN 247
>pdb|3V71|A Chain A, Crystal Structure Of Puf-6 In Complex With 5be13 Rna
Length = 382
Score = 31.2 bits (69), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
Query: 112 VGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGM 166
VGL + + N + +LV +PA++ + L ++I G G LAM + VV +
Sbjct: 63 VGLCHSRNGNFIVQKLVELATPAEQRELLRQMIDG---GLLAMCKDKFACRVVQL 114
>pdb|2I0O|A Chain A, Crystal Structure Of Anopheles Gambiae SerTHR PHOSPHATASE
COMPLEXED With Zn2+
Length = 304
Score = 30.4 bits (67), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 31/56 (55%), Gaps = 4/56 (7%)
Query: 209 GITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGCNSF 264
GI F+ + + F ++++K GM+ S CE +F++C P+ +G GC++
Sbjct: 245 GIWNFMTSEQVVQF-VQERINKPGMKLSKICEELFDHCLAPHTR---GDGTGCDNM 296
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.133 0.399
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,863,778
Number of Sequences: 62578
Number of extensions: 313848
Number of successful extensions: 652
Number of sequences better than 100.0: 58
Number of HSP's better than 100.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 537
Number of HSP's gapped (non-prelim): 66
length of query: 274
length of database: 14,973,337
effective HSP length: 97
effective length of query: 177
effective length of database: 8,903,271
effective search space: 1575878967
effective search space used: 1575878967
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)