Query 023999
Match_columns 274
No_of_seqs 132 out of 1390
Neff 8.8
Searched_HMMs 46136
Date Fri Mar 29 08:11:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023999.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023999hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0141 Isovaleryl-CoA dehydro 100.0 4.5E-48 9.7E-53 325.2 18.6 239 28-267 38-278 (421)
2 KOG0139 Short-chain acyl-CoA d 100.0 1.9E-47 4.1E-52 325.9 14.3 236 28-267 34-269 (398)
3 KOG0140 Medium-chain acyl-CoA 100.0 1.8E-44 3.9E-49 303.3 16.7 236 28-267 25-263 (408)
4 PLN02519 isovaleryl-CoA dehydr 100.0 7.5E-42 1.6E-46 313.4 25.4 238 26-264 21-258 (404)
5 cd01156 IVD Isovaleryl-CoA deh 100.0 9.3E-42 2E-46 310.0 23.3 233 31-266 2-234 (376)
6 cd01157 MCAD Medium chain acyl 100.0 5.1E-41 1.1E-45 305.4 22.8 233 31-267 1-236 (378)
7 PRK03354 crotonobetainyl-CoA d 100.0 1.2E-40 2.6E-45 303.2 23.4 231 29-265 3-234 (380)
8 cd01162 IBD Isobutyryl-CoA deh 100.0 1.3E-40 2.7E-45 302.6 23.2 231 31-266 1-231 (375)
9 cd01151 GCD Glutaryl-CoA dehyd 100.0 2.8E-40 6E-45 301.4 25.1 227 29-263 11-237 (386)
10 cd01160 LCAD Long chain acyl-C 100.0 1.8E-40 3.9E-45 301.2 22.7 229 34-266 2-231 (372)
11 TIGR03207 cyc_hxne_CoA_dh cycl 100.0 2.3E-40 4.9E-45 300.6 22.5 231 31-266 1-232 (372)
12 PTZ00461 isovaleryl-CoA dehydr 100.0 3.8E-40 8.2E-45 302.7 22.8 231 28-266 34-265 (410)
13 cd01158 SCAD_SBCAD Short chain 100.0 6.6E-40 1.4E-44 297.5 22.0 230 34-266 2-231 (373)
14 PRK12341 putative acyl-CoA deh 100.0 1.2E-39 2.5E-44 296.9 23.4 230 29-265 3-235 (381)
15 cd01161 VLCAD Very long chain 100.0 3.7E-39 8.1E-44 296.1 22.5 231 30-266 26-262 (409)
16 TIGR03203 pimD_small pimeloyl- 100.0 4.1E-39 8.8E-44 292.7 22.1 230 30-267 3-235 (378)
17 PLN02526 acyl-coenzyme A oxida 100.0 3.4E-38 7.4E-43 289.8 24.8 225 30-262 28-252 (412)
18 TIGR03204 pimC_large pimeloyl- 100.0 9.2E-38 2E-42 285.5 24.1 232 29-265 2-237 (395)
19 cd01155 ACAD_FadE2 Acyl-CoA de 100.0 2.2E-37 4.8E-42 283.0 22.0 232 35-267 3-251 (394)
20 cd01152 ACAD_fadE6_17_26 Putat 100.0 2.6E-37 5.7E-42 281.3 20.0 227 34-266 2-234 (380)
21 PRK09463 fadE acyl-CoA dehydro 100.0 7.9E-37 1.7E-41 294.7 23.0 244 17-267 66-328 (777)
22 PRK13026 acyl-CoA dehydrogenas 100.0 2.7E-36 5.9E-41 290.1 22.9 232 30-267 77-327 (774)
23 cd01153 ACAD_fadE5 Putative ac 100.0 9.9E-36 2.1E-40 273.2 22.3 221 40-265 2-242 (407)
24 cd01163 DszC Dibenzothiophene 100.0 7.4E-36 1.6E-40 271.5 21.2 210 43-262 3-212 (377)
25 COG1960 CaiA Acyl-CoA dehydrog 100.0 4E-35 8.6E-40 268.1 20.2 235 30-267 4-247 (393)
26 PLN02876 acyl-CoA dehydrogenas 100.0 1.5E-34 3.2E-39 285.5 23.0 235 29-266 400-674 (822)
27 KOG0137 Very-long-chain acyl-C 100.0 2.3E-35 5E-40 266.8 15.1 257 7-266 52-316 (634)
28 PTZ00456 acyl-CoA dehydrogenas 100.0 2.8E-34 6E-39 273.6 21.8 233 30-266 54-312 (622)
29 KOG0138 Glutaryl-CoA dehydroge 100.0 2.7E-33 5.9E-38 235.4 18.2 229 28-267 52-282 (432)
30 PLN02636 acyl-coenzyme A oxida 100.0 7.9E-32 1.7E-36 259.1 20.7 218 31-257 61-303 (686)
31 cd01154 AidB Proteins involved 100.0 3.3E-30 7.1E-35 237.2 20.9 214 43-266 37-268 (418)
32 PTZ00457 acyl-CoA dehydrogenas 100.0 4.2E-30 9.2E-35 239.0 21.6 179 73-267 58-245 (520)
33 PLN02312 acyl-CoA oxidase 100.0 5.4E-30 1.2E-34 246.0 20.3 193 59-256 101-307 (680)
34 KOG1469 Predicted acyl-CoA deh 100.0 1.3E-30 2.9E-35 216.3 12.6 200 68-267 30-239 (392)
35 cd01159 NcnH Naphthocyclinone 100.0 2.6E-30 5.6E-35 234.5 14.8 196 43-257 3-198 (370)
36 cd00567 ACAD Acyl-CoA dehydrog 100.0 1.1E-27 2.4E-32 213.4 17.4 182 34-262 2-184 (327)
37 cd01150 AXO Peroxisomal acyl-C 99.9 2.1E-25 4.6E-30 213.3 16.4 163 94-256 80-257 (610)
38 PRK11561 isovaleryl CoA dehydr 99.9 5.4E-25 1.2E-29 206.1 17.6 187 67-266 88-293 (538)
39 PTZ00460 acyl-CoA dehydrogenas 99.9 1.6E-23 3.5E-28 200.6 16.3 146 111-256 90-250 (646)
40 PLN02443 acyl-coenzyme A oxida 99.9 1.4E-22 3.1E-27 194.4 16.0 143 116-258 99-259 (664)
41 PF02771 Acyl-CoA_dh_N: Acyl-C 99.8 1E-19 2.2E-24 137.5 7.1 113 32-147 1-113 (113)
42 KOG0135 Pristanoyl-CoA/acyl-Co 99.7 2.9E-17 6.2E-22 148.7 12.2 186 69-258 81-281 (661)
43 PF02770 Acyl-CoA_dh_M: Acyl-C 99.5 1.3E-14 2.8E-19 93.9 6.0 51 151-201 1-51 (52)
44 TIGR02309 HpaB-1 4-hydroxyphen 99.5 3.9E-13 8.5E-18 125.1 12.8 129 134-263 127-282 (477)
45 KOG0136 Acyl-CoA oxidase [Lipi 99.4 2E-12 4.4E-17 119.8 12.9 160 113-272 108-286 (670)
46 PF11794 HpaB_N: 4-hydroxyphen 98.6 2.9E-07 6.4E-12 79.0 10.4 122 133-254 122-263 (264)
47 COG2368 Aromatic ring hydroxyl 98.4 1.7E-06 3.7E-11 78.9 10.0 121 134-254 131-275 (493)
48 TIGR02310 HpaB-2 4-hydroxyphen 98.4 8.1E-06 1.7E-10 76.6 13.5 122 133-254 135-279 (519)
49 PF14749 Acyl-CoA_ox_N: Acyl-c 85.1 1.3 2.8E-05 33.6 3.8 33 116-148 92-124 (125)
50 KOG4634 Mitochondrial F1F0-ATP 41.1 17 0.00038 26.1 1.4 47 1-49 2-48 (105)
51 PF05284 DUF736: Protein of un 40.3 1.3E+02 0.0028 22.2 6.1 72 171-248 7-80 (107)
52 PF01726 LexA_DNA_bind: LexA D 39.7 64 0.0014 21.4 4.0 53 28-81 1-57 (65)
53 PF02084 Bindin: Bindin; Inte 38.5 1.2E+02 0.0027 25.5 6.2 66 60-146 97-163 (238)
54 PF10001 DUF2242: Uncharacteri 38.0 1.7E+02 0.0038 22.0 7.6 50 178-227 22-71 (121)
55 PF12584 TRAPPC10: Trafficking 28.1 1.8E+02 0.0039 22.5 5.5 15 172-186 66-80 (147)
56 COG4953 PbpC Membrane carboxyp 22.9 1.3E+02 0.0028 29.7 4.4 47 69-116 407-461 (733)
No 1
>KOG0141 consensus Isovaleryl-CoA dehydrogenase [Amino acid transport and metabolism; Lipid transport and metabolism]
Probab=100.00 E-value=4.5e-48 Score=325.24 Aligned_cols=239 Identities=66% Similarity=1.035 Sum_probs=230.2
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhhcCcchhchhccCCCCCcHHHHHHHHhcCCcCCCCCccCCCCCCCHHHHHHHHHHHHh
Q 023999 28 TSLLFDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAMEEISR 107 (274)
Q Consensus 28 ~~~~s~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~~l~vPe~~GG~g~~~~~~~~v~e~lg~ 107 (274)
+..+++|+. .++++++.|+++.+.|.+.++|+.+.++..+++|+++.++|++|+..|++|||.|+++.+-+.++|++++
T Consensus 38 ~~g~~~e~~-~~r~sv~kF~qeelaP~a~eidk~n~~~~~r~~WkklG~~gllGita~~~~GG~G~~y~~h~ivmEE~sr 116 (421)
T KOG0141|consen 38 MFGLSDEQD-QLRESVRKFFQEELAPHASEIDKANEFKDLREFWKKLGKQGLLGITAPEEYGGSGGGYLSHCIVMEEISR 116 (421)
T ss_pred hcCCCHHHH-HHHHHHHHHHHHhhcchhhhhhhcCCcchHHHHHHHhhhcCcccccchhhhCCCchhHHHHHHHHHHHHh
Confidence 456899999 9999999999999999999999999999888999999999999999999999999999999999999999
Q ss_pred hcCcchhhhhhhhHHHHHHHHhcCCHHHHHHHhHHHhcCCceEEEEeeCCCCCCCCCCceEEEEEeCCeEEEeeEeeccc
Q 023999 108 ASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCT 187 (274)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~G~~~~~~a~te~~~g~d~~~~~~~a~~~~~g~~l~G~k~~vs 187 (274)
+....+..+..|+.++..-|.+.|+++|+++|+|++.+|+-++++|||||.+|||+..+++.|+++++.|+|||.|.|+|
T Consensus 117 a~g~v~lsygaHSnlcinqlvrnGseeQkekylPkl~sGe~iGalAMsEp~AGSDvv~mK~~Aek~g~~yiLNGsK~wit 196 (421)
T KOG0141|consen 117 ASGGVALSYGAHSNLCINQLVRNGSEEQKEKYLPKLISGEHIGALAMSEPGAGSDVVSMKLKAEKKGDDYILNGSKFWIT 196 (421)
T ss_pred hcCCcccccccccchHHHHHHhcCCHHHHHhhhhhhhcccccceeeecCCCCCCccceeeeeceecCCcEEecCcEEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCEEEEEEEeCCC--CCCCCeEEEEEeCCCCCeEEeccCcccCCCCCceeeEEeceeeeCCCCcccCCCccccccc
Q 023999 188 NGPVAQTLVVYAKTDIK--AGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGCNSFG 265 (274)
Q Consensus 188 ~~~~a~~~lv~a~~~~~--~~~~~~~~~lv~~~~~gv~~~~~~~~~Gl~~~~~~~v~f~~v~Vp~~~llg~~g~g~~~~~ 265 (274)
|+++||.++|.|+++.. +.++++++|+|+...||++..+..+++||++++++++.|+|++||+++++|.++.|+-++|
T Consensus 197 NG~~advliVyAkTd~~a~~~~hGIt~FiVEkgm~GFs~~~KLdKlGmrgsdTcELvFed~~vpas~ilg~enkGvYvlM 276 (421)
T KOG0141|consen 197 NGPDADVLIVYAKTDHSAVPPSHGITAFIVEKGMPGFSTAQKLDKLGMRGSDTCELVFEDCKVPASNILGEENKGVYVLM 276 (421)
T ss_pred cCCCCcEEEEEEecCCCCCCCcCceEEEEEcCCCcccccchhhHhhcCCCCcchheehhhccCcHHHhcCcCCceEEEEe
Confidence 99999999999998765 5678999999999999999999999999999999999999999999999999999999988
Q ss_pred CC
Q 023999 266 EP 267 (274)
Q Consensus 266 ~~ 267 (274)
.-
T Consensus 277 sg 278 (421)
T KOG0141|consen 277 SG 278 (421)
T ss_pred cC
Confidence 75
No 2
>KOG0139 consensus Short-chain acyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=100.00 E-value=1.9e-47 Score=325.89 Aligned_cols=236 Identities=40% Similarity=0.709 Sum_probs=225.6
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhhcCcchhchhccCCCCCcHHHHHHHHhcCCcCCCCCccCCCCCCCHHHHHHHHHHHHh
Q 023999 28 TSLLFDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAMEEISR 107 (274)
Q Consensus 28 ~~~~s~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~~l~vPe~~GG~g~~~~~~~~v~e~lg~ 107 (274)
-..+++.++ ++.+++++|+.+.+.|.+++.|++..+|. .+++.+.++|++++.+||+|||.|.++...+.++|++++
T Consensus 34 l~~l~E~e~-~l~~tvrkfa~~~i~Plv~~mD~~~~~~~--~v~k~~fe~Glmgv~vpeeyGGsG~df~~~~~v~EEisk 110 (398)
T KOG0139|consen 34 LQILSETEQ-MLQKTVRKFAQEEIKPLVREMDRESRYPA--SVIKGLFELGLMGVEVPEEYGGSGLDFFAAAIVIEEISK 110 (398)
T ss_pred hhhcCcHHH-HHHHHHHHHHHHhcchHHHhhhhhccCCH--HHHHHHhhcCcceeecChhhCCCchhHHHHHHHHHHHhc
Confidence 346899999 99999999999999999999999999999 999999999999999999999999999999999999999
Q ss_pred hcCcchhhhhhhhHHHHHHHHhcCCHHHHHHHhHHHhcCCceEEEEeeCCCCCCCCCCceEEEEEeCCeEEEeeEeeccc
Q 023999 108 ASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCT 187 (274)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~G~~~~~~a~te~~~g~d~~~~~~~a~~~~~g~~l~G~k~~vs 187 (274)
.|++++..+..|..+...++..+|+++||++|+|. +.|+.++++|+|||..|||...+.|+|++++|.|+|||.|.|+|
T Consensus 111 ~d~sv~~~v~v~ntL~~~~i~~fGteeqK~~~~P~-~~~d~vgsfAlSEpgaGSDa~A~~T~Ak~~Gd~~viNGsKmWIt 189 (398)
T KOG0139|consen 111 VDASVGVIVDVQNTLYLPLIIQFGTEEQKEKYLPK-LTGDLVGSFALSEPGAGSDAFALKTTAKKDGDDYVINGSKMWIT 189 (398)
T ss_pred cCccceeEEEecccccchHHHHhCcHHHHhhhcch-hhccccceeeecCCCCCcchHHhhhhHhhcCCeEEEecceeeec
Confidence 99999998888887888999999999999977776 57888999999999999999999999999999999999999999
Q ss_pred CCCCCCEEEEEEEeCCCCCCCCeEEEEEeCCCCCeEEeccCcccCCCCCceeeEEeceeeeCCCCcccCCCcccccccCC
Q 023999 188 NGPVAQTLVVYAKTDIKAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGCNSFGEP 267 (274)
Q Consensus 188 ~~~~a~~~lv~a~~~~~~~~~~~~~~lv~~~~~gv~~~~~~~~~Gl~~~~~~~v~f~~v~Vp~~~llg~~g~g~~~~~~~ 267 (274)
|+..|++++|+|..++..+.+++++|+||++.||+++..+.+++|||++.++.++|+||+||++++||+.|.|+++.++.
T Consensus 190 N~~~A~~~lVfan~d~~~~~Kgit~fiV~rd~~Gl~~~k~eDKLGmRaSsTcql~fedVrVpks~IlGe~G~GykyAm~~ 269 (398)
T KOG0139|consen 190 NAGEADWFLVFANADPSKGYKGITCFIVPRDTPGLSLGKKEDKLGMRASSTCQLHFEDVRVPKSSILGEYGKGYKYAIEV 269 (398)
T ss_pred CCcccceEEEEEecChhhccCceeEEEeeCCCCCcccCCccccccccccceeeEEeccccccchhhcccCCcchHHHHHh
Confidence 99999999999999877788999999999999999999999999999999999999999999999999999999998875
No 3
>KOG0140 consensus Medium-chain acyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=100.00 E-value=1.8e-44 Score=303.29 Aligned_cols=236 Identities=35% Similarity=0.586 Sum_probs=227.9
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhhcCcchhchhccCCCCCcHHHHHHHHhcCCcCCCCCccCCCCCCCHHHHHHHHHHHHh
Q 023999 28 TSLLFDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAMEEISR 107 (274)
Q Consensus 28 ~~~~s~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~~l~vPe~~GG~g~~~~~~~~v~e~lg~ 107 (274)
+..++++|. ++++.+++|.++++.|.+.+.|+.+.+|- +++++..++|+....+|+++||.|++..+.+.+.|+|++
T Consensus 25 sf~L~e~qk-e~q~~A~kFa~~e~~P~aae~Dk~ge~P~--~iirkA~~lG~~~~~ip~~~GG~Gls~l~t~lI~E~Lay 101 (408)
T KOG0140|consen 25 SFGLTEDQK-EFQEAARKFAKDEMIPNAAEYDKSGEFPW--EIIRKAHELGFMNTYIPEDYGGLGLSRLDTCLIFEALAY 101 (408)
T ss_pred ccCcchHHH-HHHHHHHHHHHHhhccchhhhcccCCCcH--HHHHHHHHcccCcccCccccCCCCchhHHHHHHHHHHHc
Confidence 678999999 99999999999999999999999999999 999999999999999999999999999999999999999
Q ss_pred hcCcchhhhhhhhHHHHHHHHhcCCHHHHHHHhHHHhcCCceEEEEeeCCCCCCCCCCceEEEEEeCCeEEEeeEeeccc
Q 023999 108 ASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCT 187 (274)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~G~~~~~~a~te~~~g~d~~~~~~~a~~~~~g~~l~G~k~~vs 187 (274)
.|.++...+..|. ++.+++..+|+++||++||++++....+++.++|||++|||..++.|+|++.+|.|+|||.|.|+|
T Consensus 102 GCtg~~~~I~~~~-l~~~pi~~~gneeqKkk~lg~l~~~p~~asYcvTEPgAGSDvagikTka~KkGDeYiiNGsKawIt 180 (408)
T KOG0140|consen 102 GCTGIQTAISIHN-LAAWPIILSGNEEQKKKYLGRLAEEPKVASYCVTEPGAGSDVAGIKTKAEKKGDEYIINGSKAWIT 180 (408)
T ss_pred cchhHHHHHhccc-hhhhhehhcCcHHHHHhhhhhhhcchhhhhhhccCCCCCcchhhhhhhhhhcCCEEEEcCceeeee
Confidence 9999988888888 999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCEEEEEEEeCCC---CCCCCeEEEEEeCCCCCeEEeccCcccCCCCCceeeEEeceeeeCCCCcccCCCcccccc
Q 023999 188 NGPVAQTLVVYAKTDIK---AGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGCNSF 264 (274)
Q Consensus 188 ~~~~a~~~lv~a~~~~~---~~~~~~~~~lv~~~~~gv~~~~~~~~~Gl~~~~~~~v~f~~v~Vp~~~llg~~g~g~~~~ 264 (274)
|+.+++|++|++|.+++ ++.+.++.|+|+.+.||++.......||.+.+++-.++|+||+||.+++||.+|.|++++
T Consensus 181 g~G~anwyfVlaRtd~~pk~p~~Kaft~fiVe~dTpGlt~GkKE~nmGqr~sdTR~itFEDvrVP~~Nvlg~~G~GFkvA 260 (408)
T KOG0140|consen 181 GAGHANWYFVLARTDPDPKTPAGKAFTAFIVEGDTPGLTRGKKEKNMGQRCSDTRGITFEDVRVPKENVLGAPGAGFKVA 260 (408)
T ss_pred cCCccceEEEEEecCCCCCCCCCcceEEEEEeCCCCCcCcChhhhcccccCCCCceeeeeecccchhccccCCCccceeh
Confidence 99999999999999886 456789999999999999999999999999999999999999999999999999999999
Q ss_pred cCC
Q 023999 265 GEP 267 (274)
Q Consensus 265 ~~~ 267 (274)
+..
T Consensus 261 m~~ 263 (408)
T KOG0140|consen 261 MGG 263 (408)
T ss_pred hhh
Confidence 876
No 4
>PLN02519 isovaleryl-CoA dehydrogenase
Probab=100.00 E-value=7.5e-42 Score=313.40 Aligned_cols=238 Identities=87% Similarity=1.375 Sum_probs=216.4
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHhhcCcchhchhccCCCCCcHHHHHHHHhcCCcCCCCCccCCCCCCCHHHHHHHHHHH
Q 023999 26 SSTSLLFDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAMEEI 105 (274)
Q Consensus 26 ~~~~~~s~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~~l~vPe~~GG~g~~~~~~~~v~e~l 105 (274)
.+++.+++++. ++++.+++|+.+.+.+.+.+.|+.+.+|...++|+.|++.||+++.+|+++||.|+++.+.+.++|++
T Consensus 21 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~a~~~d~~~~~p~~~~~~~~l~~~G~~~~~vP~e~GG~g~~~~~~~~v~e~l 99 (404)
T PLN02519 21 SSSLLFDDTQL-QFKESVQQFAQENIAPHAAAIDATNSFPKDVNLWKLMGDFNLHGITAPEEYGGLGLGYLYHCIAMEEI 99 (404)
T ss_pred CCCCCCCHHHH-HHHHHHHHHHHHhCCcchHHHHhcCCCCchHHHHHHHHHCCCCcccCChhhCCCCCCHHHHHHHHHHH
Confidence 45667899998 99999999999999998888888888887223799999999999999999999999999999999999
Q ss_pred HhhcCcchhhhhhhhHHHHHHHHhcCCHHHHHHHhHHHhcCCceEEEEeeCCCCCCCCCCceEEEEEeCCeEEEeeEeec
Q 023999 106 SRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMW 185 (274)
Q Consensus 106 g~~~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~G~~~~~~a~te~~~g~d~~~~~~~a~~~~~g~~l~G~k~~ 185 (274)
+++++++++.+..|.......+..+++++||++|++.+++|+.++++++|||.+|+|...+.+++++++|||+|||+|.|
T Consensus 100 a~~~~s~a~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~G~~~~~~a~sEp~~gsd~~~~~t~a~~~~~g~~lnG~K~~ 179 (404)
T PLN02519 100 SRASGSVGLSYGAHSNLCINQLVRNGTPAQKEKYLPKLISGEHVGALAMSEPNSGSDVVSMKCKAERVDGGYVLNGNKMW 179 (404)
T ss_pred hhhcccHHHHHHhhhhhHHHHHHHhCCHHHHHHHHHHHhCCCeeEEEEecCCCcCCCcccceEEEEEeCCEEEEEeEEEe
Confidence 99999998877777545566788899999999999999999999999999999999998999999999999999999999
Q ss_pred ccCCCCCCEEEEEEEeCCCCCCCCeEEEEEeCCCCCeEEeccCcccCCCCCceeeEEeceeeeCCCCcccCCCcccccc
Q 023999 186 CTNGPVAQTLVVYAKTDIKAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGCNSF 264 (274)
Q Consensus 186 vs~~~~a~~~lv~a~~~~~~~~~~~~~~lv~~~~~gv~~~~~~~~~Gl~~~~~~~v~f~~v~Vp~~~llg~~g~g~~~~ 264 (274)
++++..||+++|.++.+++++..++.+|+||++.|||++.++|+++|+++++++++.|+||+||+++++|.+++|+...
T Consensus 180 vs~a~~ad~~~v~a~~~~~~~~~~~~~~lVp~~~~Gv~~~~~~~~~G~rgt~s~~v~f~~v~Vp~~~~lg~~~~G~~~~ 258 (404)
T PLN02519 180 CTNGPVAQTLVVYAKTDVAAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPEENVLGQEGKGVYVM 258 (404)
T ss_pred ecCCCcCCEEEEEEEeCCCCCCCeeEEEEEeCCCCCeeccCcccccCCCCCCeeEEEeCeEEecHHHcCCCCCccHHHH
Confidence 9999999999999997654445578899999999999998999999999999999999999999999999998888654
No 5
>cd01156 IVD Isovaleryl-CoA dehydrogenase. Isovaleryl-CoA dehydrogenase (IVD) is an is an acyl-CoA dehydrogenase, which catalyzes the third step in leucine catabolism, the conversion of isovaleryl-CoA (3-methylbutyryl-CoA) into 3-methylcrotonyl-CoA. IVD is a homotetramer and has the greatest affinity for small branched chain substrates.
Probab=100.00 E-value=9.3e-42 Score=310.01 Aligned_cols=233 Identities=69% Similarity=1.108 Sum_probs=213.3
Q ss_pred CCHHHHHHHHHHHHHHHHhhcCcchhchhccCCCCCcHHHHHHHHhcCCcCCCCCccCCCCCCCHHHHHHHHHHHHhhcC
Q 023999 31 LFDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAMEEISRASG 110 (274)
Q Consensus 31 ~s~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~~l~vPe~~GG~g~~~~~~~~v~e~lg~~~~ 110 (274)
++++++ ++++.+++|+.+.+.+.+.+.|+.+.+|. ++|+.|++.||+++.+|++|||.|+++.+.+.++|+++++++
T Consensus 2 ~~~~~~-~l~~~~~~~~~~~~~~~a~~~d~~~~~~~--~~~~~l~~~Gl~~~~vP~e~GG~g~~~~~~~~~~e~la~~~~ 78 (376)
T cd01156 2 LDDEIE-MLRQSVREFAQKEIAPLAAKIDRDNEFPR--DLWRKMGKLGLLGITAPEEYGGSGMGYLAHVIIMEEISRASG 78 (376)
T ss_pred CCHHHH-HHHHHHHHHHHHhcCcchHHHHhhCCCCH--HHHHHHHhCCCCcccCCHhhCCCCCCHHHHHHHHHHHhccch
Confidence 567888 99999999999999988877888888998 999999999999999999999999999999999999999999
Q ss_pred cchhhhhhhhHHHHHHHHhcCCHHHHHHHhHHHhcCCceEEEEeeCCCCCCCCCCceEEEEEeCCeEEEeeEeecccCCC
Q 023999 111 SVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGP 190 (274)
Q Consensus 111 ~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~G~~~~~~a~te~~~g~d~~~~~~~a~~~~~g~~l~G~k~~vs~~~ 190 (274)
++++.+..|...+...|..+++++|+++|++++++|+++++++++||.+|+|...+.+++++++|||+|||+|.|++++.
T Consensus 79 ~~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~l~~G~~~~~~a~sEp~~gs~~~~~~t~a~~~~~g~~l~G~k~~vs~~~ 158 (376)
T cd01156 79 SVALSYGAHSNLCINQIYRNGSAAQKEKYLPKLISGEHIGALAMSEPNAGSDVVSMKLRAEKKGDRYVLNGSKMWITNGP 158 (376)
T ss_pred hHHHHHHHhhhhHHHHHHHhCCHHHHHHHHHHHhCCCeeEEEEecCCCCCCChhhCeEEEEEeCCEEEEEEEEEEecCCC
Confidence 99887766654555678889999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCEEEEEEEeCCCCCCCCeEEEEEeCCCCCeEEeccCcccCCCCCceeeEEeceeeeCCCCcccCCCcccccccC
Q 023999 191 VAQTLVVYAKTDIKAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGCNSFGE 266 (274)
Q Consensus 191 ~a~~~lv~a~~~~~~~~~~~~~~lv~~~~~gv~~~~~~~~~Gl~~~~~~~v~f~~v~Vp~~~llg~~g~g~~~~~~ 266 (274)
.||+++|+++.+++++..++.+|+||++.|||++.+.|+++|++++++++|.|+||+||++++||..+.|+.++.+
T Consensus 159 ~a~~~lv~a~~~~~~~~~~~~~~lv~~~~~gv~~~~~~~~~G~~~~~~~~v~~~~v~Vp~~~~lg~~~~g~~~~~~ 234 (376)
T cd01156 159 DADTLVVYAKTDPSAGAHGITAFIVEKGMPGFSRAQKLDKLGMRGSNTCELVFEDCEVPEENILGGENKGVYVLMS 234 (376)
T ss_pred cCCEEEEEEEeCCCCCCCceEEEEEcCCCCCeecCCccccccCCCCCceEEEeCceEecHHHcCCCCCchHHHHHH
Confidence 9999999998765444457889999999999999888999999999999999999999999999999988876543
No 6
>cd01157 MCAD Medium chain acyl-CoA dehydrogenase. MCADs are mitochondrial beta-oxidation enzymes, which catalyze the alpha,beta dehydrogenation of the corresponding medium chain acyl-CoA by FAD, which becomes reduced. The reduced form of MCAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. MCAD is a homotetramer.
Probab=100.00 E-value=5.1e-41 Score=305.41 Aligned_cols=233 Identities=38% Similarity=0.575 Sum_probs=208.9
Q ss_pred CCHHHHHHHHHHHHHHHHhhcCcchhchhccCCCCCcHHHHHHHHhcCCcCCCCCccCCCCCCCHHHHHHHHHHHHhhcC
Q 023999 31 LFDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAMEEISRASG 110 (274)
Q Consensus 31 ~s~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~~l~vPe~~GG~g~~~~~~~~v~e~lg~~~~ 110 (274)
++++++ ++++.+++|+.+.+.+.+.+.|+.+.+|. ++|+.|.+.||+++.+|++|||.|+++.+.+.++|++|+.|+
T Consensus 1 ~~~~~~-~l~~~~~~~~~~~~~~~~~~~d~~~~~p~--~~~~~l~~~G~~~~~vP~~~GG~g~~~~~~~~v~e~l~~~~~ 77 (378)
T cd01157 1 LTEQQK-EFQETARKFAREEIIPVAAEYDKSGEYPW--PLIKRAWELGLMNTHIPEDCGGLGLGTFDTCLITEELAYGCT 77 (378)
T ss_pred CCHHHH-HHHHHHHHHHHHhcccchHHHHhhCCCCH--HHHHHHHhCCCCCcCCChhhCCCCCCHHHHHHHHHHHHhhhh
Confidence 467888 99999999999999988888888888998 999999999999999999999999999999999999999999
Q ss_pred cchhhhhhhhHHHHHHHHhcCCHHHHHHHhHHHhcCCceEEEEeeCCCCCCCCCCceEEEEEeCCeEEEeeEeecccCCC
Q 023999 111 SVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGP 190 (274)
Q Consensus 111 ~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~G~~~~~~a~te~~~g~d~~~~~~~a~~~~~g~~l~G~k~~vs~~~ 190 (274)
++++.+..+. .+...+..+++++||++|++++++|++++++++|||..|+|...+.+++++++|||+|||+|.|++++.
T Consensus 78 ~~~~~~~~~~-~~~~~l~~~g~~~q~~~~l~~~~~G~~~~~~a~tEp~~gs~~~~~~t~a~~~~~g~~l~G~k~~vs~~~ 156 (378)
T cd01157 78 GVQTAIEANS-LGQMPVIISGNDEQKKKYLGRMTEEPLMCAYCVTEPGAGSDVAGIKTKAEKKGDEYIINGQKMWITNGG 156 (378)
T ss_pred HHHHHHHhhh-hhHHHHHHhCCHHHHHHHHHHHhCCCeeEEEEecCCCCCCchhcCeEEEEEcCCEEEEeeEEEeecCCc
Confidence 8776554443 445566778999999999999999999999999999999999889999999999999999999999999
Q ss_pred CCCEEEEEEEeCCCCC---CCCeEEEEEeCCCCCeEEeccCcccCCCCCceeeEEeceeeeCCCCcccCCCcccccccCC
Q 023999 191 VAQTLVVYAKTDIKAG---SKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGCNSFGEP 267 (274)
Q Consensus 191 ~a~~~lv~a~~~~~~~---~~~~~~~lv~~~~~gv~~~~~~~~~Gl~~~~~~~v~f~~v~Vp~~~llg~~g~g~~~~~~~ 267 (274)
.||+++|+++.+++.+ .+++.+|+||++.|||++.+.|.++|+++++++++.|+||+||++++++.+++|++++.+.
T Consensus 157 ~ad~~lv~a~~~~~~~~~~~~~~~~~lv~~~~~gv~~~~~~~~~G~~~~~s~~~~~~~v~Vp~~~~lg~~~~g~~~~~~~ 236 (378)
T cd01157 157 KANWYFLLARSDPDPKCPASKAFTGFIVEADTPGIQPGRKELNMGQRCSDTRGITFEDVRVPKENVLIGEGAGFKIAMGA 236 (378)
T ss_pred cCCEEEEEEEeCCcccCCCCCceEEEEEcCCCCCeeccCcccccCCCCCCceEEEeccEEECHHHcCCCCCchHHHHHHH
Confidence 9999999999754321 3467899999999999998899999999999999999999999999999999888765443
No 7
>PRK03354 crotonobetainyl-CoA dehydrogenase; Validated
Probab=100.00 E-value=1.2e-40 Score=303.24 Aligned_cols=231 Identities=25% Similarity=0.447 Sum_probs=205.8
Q ss_pred CCCCHHHHHHHHHHHHHHHHhhc-CcchhchhccCCCCCcHHHHHHHHhcCCcCCCCCccCCCCCCCHHHHHHHHHHHHh
Q 023999 29 SLLFDDTQLQFKESVGQFARENI-APRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAMEEISR 107 (274)
Q Consensus 29 ~~~s~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~G~~~l~vPe~~GG~g~~~~~~~~v~e~lg~ 107 (274)
..+|++|+ ++++.+++|+.+++ .+...+.++.+.+|. ++|+.|++.||+++.+|++|||.|.++.+++.+++++|+
T Consensus 3 ~~~~~~~~-~~~~~~r~~~~~~~~~~~~~~~d~~~~~p~--~~~~~l~~~Gl~~~~vP~~~GG~g~~~~~~~~~~~~la~ 79 (380)
T PRK03354 3 FNLNDEQE-LFVAGIRELMASENWEAYFAECDRDSVYPE--RFVKALADMGIDSLLIPEEHGGLDAGFVTLAAVWMELGR 79 (380)
T ss_pred CCCCHHHH-HHHHHHHHHHHhccCChhHHHHHhhCCCCH--HHHHHHHHCCCCccCCChhhCCCCCCHHHHHHHHHHHHh
Confidence 36899999 99999999999886 455566788888999 999999999999999999999999999999999999999
Q ss_pred hcCcchhhhhhhhHHHHHHHHhcCCHHHHHHHhHHHhcCCceEEEEeeCCCCCCCCCCceEEEEEeCCeEEEeeEeeccc
Q 023999 108 ASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCT 187 (274)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~G~~~~~~a~te~~~g~d~~~~~~~a~~~~~g~~l~G~k~~vs 187 (274)
+++++++.+..+. ....+..+++++|+++|++++++|+.+.++++|||..|+|...+.|++++++|||+|||+|.|++
T Consensus 80 ~~~s~~~~~~~~~--~~~~l~~~g~~e~~~~~l~~~~~g~~~~~~a~tE~~~gs~~~~~~t~a~~~~~g~~lnG~K~fis 157 (380)
T PRK03354 80 LGAPTYVLYQLPG--GFNTFLREGTQEQIDKIMAFRGTGKQMWNSAITEPGAGSDVGSLKTTYTRRNGKVYLNGSKCFIT 157 (380)
T ss_pred cCcchHHHHHhcc--cHHHHHHhCCHHHHHHHHHHHhCCCeeEEEEecCCCCCCchhhCEEEEEEeCCEEEEeeEEEEEc
Confidence 9998776554432 34567888999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCEEEEEEEeCCCCCCCCeEEEEEeCCCCCeEEeccCcccCCCCCceeeEEeceeeeCCCCcccCCCccccccc
Q 023999 188 NGPVAQTLVVYAKTDIKAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGCNSFG 265 (274)
Q Consensus 188 ~~~~a~~~lv~a~~~~~~~~~~~~~~lv~~~~~gv~~~~~~~~~Gl~~~~~~~v~f~~v~Vp~~~llg~~g~g~~~~~ 265 (274)
++..||+++|+++.+++++...+.+|+||++.+||++ .+|+++|+++++++++.|+||+||+++++|.+++|+.+..
T Consensus 158 ~~~~ad~~~v~a~~~~~~~~~~~~~~lv~~~~~gv~~-~~~~~~G~r~~~~~~v~f~~v~Vp~~~~lg~~g~g~~~~~ 234 (380)
T PRK03354 158 SSAYTPYIVVMARDGASPDKPVYTEWFVDMSKPGIKV-TKLEKLGLRMDSCCEITFDDVELDEKDMFGREGNGFNRVK 234 (380)
T ss_pred CCCcCCEEEEEEEcCCCCCCCceeEEEEECCCCceEe-ccccccCCCCCCeEEEEEccEEecHHHcCCCCChHHHHHH
Confidence 9999999999999754333446778999999999998 4799999999999999999999999999999998886554
No 8
>cd01162 IBD Isobutyryl-CoA dehydrogenase. Isobutyryl-CoA dehydrogenase (IBD) catalyzes the alpha, beta- dehydrogenation of short branched chain acyl-CoA intermediates in valine catabolism. It is predicted to be a homotetramer.
Probab=100.00 E-value=1.3e-40 Score=302.59 Aligned_cols=231 Identities=31% Similarity=0.556 Sum_probs=211.9
Q ss_pred CCHHHHHHHHHHHHHHHHhhcCcchhchhccCCCCCcHHHHHHHHhcCCcCCCCCccCCCCCCCHHHHHHHHHHHHhhcC
Q 023999 31 LFDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAMEEISRASG 110 (274)
Q Consensus 31 ~s~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~~l~vPe~~GG~g~~~~~~~~v~e~lg~~~~ 110 (274)
++++++ ++++.+++|+.+.+.+.+.+.|..+.+|. ++|+.++++||+++.+|+++||.|.++.+.+.++|+++++++
T Consensus 1 ~~~~~~-~l~~~~~~~~~~~~~~~a~~~d~~~~~p~--~~~~~l~~~Gl~~~~vP~~~GG~g~~~~~~~~~~~~l~~~~~ 77 (375)
T cd01162 1 LNEEQR-AIQEVARAFAAKEMAPHAADWDQKKHFPV--DVLRKAAELGFGGIYIRDDVGGSGLSRLDASIIFEALSTGCV 77 (375)
T ss_pred CCHHHH-HHHHHHHHHHHHhCCcchhhHHhhCCCCH--HHHHHHHHCCCCCcCCCHhhCCCCCCHHHHHHHHHHHHhhch
Confidence 467888 99999999999999998878888888998 999999999999999999999999999999999999999999
Q ss_pred cchhhhhhhhHHHHHHHHhcCCHHHHHHHhHHHhcCCceEEEEeeCCCCCCCCCCceEEEEEeCCeEEEeeEeecccCCC
Q 023999 111 SVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGP 190 (274)
Q Consensus 111 ~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~G~~~~~~a~te~~~g~d~~~~~~~a~~~~~g~~l~G~k~~vs~~~ 190 (274)
++++.+..|. .+...+..+++++|+++|++++++|+.+++++++||.+|+|...+.+++++++|||+|||+|+||+++.
T Consensus 78 ~~~~~~~~~~-~~~~~l~~~g~~~q~~~~l~~l~~g~~~~~~a~tE~~~gsd~~~~~t~a~~~~~g~~l~G~k~~vs~~~ 156 (375)
T cd01162 78 STAAYISIHN-MCAWMIDSFGNDEQRERFLPDLCTMEKLASYCLTEPGSGSDAAALRTRAVREGDHYVLNGSKAFISGAG 156 (375)
T ss_pred hHHHHHHHhh-hHHHHHHHhCCHHHHHHHHHHHhCCCceeEEEecCCCCCCChhhCEEEEEEeCCEEEEEEEEEEecCCC
Confidence 9887666665 566678889999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCEEEEEEEeCCCCCCCCeEEEEEeCCCCCeEEeccCcccCCCCCceeeEEeceeeeCCCCcccCCCcccccccC
Q 023999 191 VAQTLVVYAKTDIKAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGCNSFGE 266 (274)
Q Consensus 191 ~a~~~lv~a~~~~~~~~~~~~~~lv~~~~~gv~~~~~~~~~Gl~~~~~~~v~f~~v~Vp~~~llg~~g~g~~~~~~ 266 (274)
.||+++|+++.+++ +..++.+|+||++.|||++.+.|+++|+++++++++.|+||+||+++++|.+++|+++..+
T Consensus 157 ~ad~~~v~a~~~~~-~~~~~~~~lv~~~~~gv~v~~~~~~~g~~~~~~~~l~f~~v~Vp~~~~lg~~~~g~~~~~~ 231 (375)
T cd01162 157 DSDVYVVMARTGGE-GPKGISCFVVEKGTPGLSFGANEKKMGWNAQPTRAVIFEDCRVPVENRLGGEGQGFGIAMA 231 (375)
T ss_pred CCCEEEEEEEecCC-CCCceEEEEEeCCCCCeecCCcccccCCCCCCeeEEEECceEecHHHcCCCCCchHHHHHH
Confidence 99999999987542 3456789999999999999999999999999999999999999999999999998876543
No 9
>cd01151 GCD Glutaryl-CoA dehydrogenase. Glutaryl-CoA dehydrogenase (GCD). GCD is an acyl-CoA dehydrogenase, which catalyzes the oxidative decarboxylation of glutaryl-CoA to crotonyl-CoA and carbon dioxide in the catabolism of lysine, hydroxylysine, and tryptophan. It uses electron transfer flavoprotein (ETF) as an electron acceptor. GCD is a homotetramer. GCD deficiency leads to a severe neurological disorder in humans.
Probab=100.00 E-value=2.8e-40 Score=301.43 Aligned_cols=227 Identities=35% Similarity=0.621 Sum_probs=206.5
Q ss_pred CCCCHHHHHHHHHHHHHHHHhhcCcchhchhccCCCCCcHHHHHHHHhcCCcCCCCCccCCCCCCCHHHHHHHHHHHHhh
Q 023999 29 SLLFDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAMEEISRA 108 (274)
Q Consensus 29 ~~~s~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~~l~vPe~~GG~g~~~~~~~~v~e~lg~~ 108 (274)
..++++++ ++++.+++|+++.+.+...+.++.+.+|. ++|+++.+.||+++ +|+++||.|+++.+...++|++++.
T Consensus 11 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~d~~~~~~~--~~~~~l~~~Gl~~~-vP~~~GG~g~~~~~~~~v~e~l~~~ 86 (386)
T cd01151 11 DLLTEEER-AIRDTAREFCQEELAPRVLEAYREEKFDR--KIIEEMGELGLLGA-TIKGYGCAGLSSVAYGLIAREVERV 86 (386)
T ss_pred cCCCHHHH-HHHHHHHHHHHHhcCccHHHHHHhCCCCH--HHHHHHHHCCCCcc-CccccCCCCCCHHHHHHHHHHHHhh
Confidence 45789999 99999999999999988877777778898 99999999999999 9999999999999999999999999
Q ss_pred cCcchhhhhhhhHHHHHHHHhcCCHHHHHHHhHHHhcCCceEEEEeeCCCCCCCCCCceEEEEEeCCeEEEeeEeecccC
Q 023999 109 SGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTN 188 (274)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~G~~~~~~a~te~~~g~d~~~~~~~a~~~~~g~~l~G~k~~vs~ 188 (274)
+.++++.+..|...+...+..+++++|+++|++++++|++++++++|||++|+|+..+.++|++++|||+|||+|.|+|+
T Consensus 87 ~~s~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~l~~G~~~~~~a~tEp~~Gsd~~~~~t~A~~~~~g~~lnG~K~~is~ 166 (386)
T cd01151 87 DSGYRSFMSVQSSLVMLPIYDFGSEEQKQKYLPKLASGELIGCFGLTEPNHGSDPGGMETRARKDGGGYKLNGSKTWITN 166 (386)
T ss_pred ChhHHHHHHHHHhHHHHHHHHhCCHHHHHHHHHHHhCCCeEEEEEecCCCCCCChhhCeEEEEEECCEEEEEEEEEeecC
Confidence 99987766665545556788899999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCEEEEEEEeCCCCCCCCeEEEEEeCCCCCeEEeccCcccCCCCCceeeEEeceeeeCCCCcccCCCccccc
Q 023999 189 GPVAQTLVVYAKTDIKAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGCNS 263 (274)
Q Consensus 189 ~~~a~~~lv~a~~~~~~~~~~~~~~lv~~~~~gv~~~~~~~~~Gl~~~~~~~v~f~~v~Vp~~~llg~~g~g~~~ 263 (274)
+..||+++|+++.+++ .++.+|+||++.|||++.+.|+++|+++++++++.|+||+||++++++. ++|+..
T Consensus 167 ~~~Ad~~lv~ar~~~~---~~~~~flVp~~~~gv~i~~~~~~~G~~g~~s~~v~f~~v~Vp~~~~l~~-~~g~~~ 237 (386)
T cd01151 167 SPIADVFVVWARNDET---GKIRGFILERGMKGLSAPKIQGKFSLRASITGEIVMDNVFVPEENLLPG-AEGLRG 237 (386)
T ss_pred CCcCCEEEEEEEECCC---CcEEEEEEcCCCCCeecCCCCCCcCCCCCceeEEEEccEEeCHHHcCCc-cccHHH
Confidence 9999999999997642 3677899999999999989999999999999999999999999999986 456543
No 10
>cd01160 LCAD Long chain acyl-CoA dehydrogenase. LCAD is an acyl-CoA dehydrogenases (ACAD), which is found in the mitochondria of eukaryotes and in some prokaryotes. It catalyzes the alpha, beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of LCAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. LCAD acts as a homodimer.
Probab=100.00 E-value=1.8e-40 Score=301.20 Aligned_cols=229 Identities=38% Similarity=0.745 Sum_probs=206.3
Q ss_pred HHHHHHHHHHHHHHHhhcCcchhchhccCCCCCcHHHHHHHHhcCCcCCCCCccCCCCCCCHHHHHHHHHHHHhhcCcch
Q 023999 34 DTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAMEEISRASGSVG 113 (274)
Q Consensus 34 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~~l~vPe~~GG~g~~~~~~~~v~e~lg~~~~~~~ 113 (274)
+|+ ++++.+++|+.+.+.+.+.+.|+++.+|. ++|+.|+++||+++.+|++|||.|.++.+.+.++|++++++.+ +
T Consensus 2 ~~~-~l~~~~~~~~~~~~~~~~~~~d~~~~~~~--~~~~~l~~~G~~~~~vP~~~GG~g~~~~~~~~~~e~la~~~~~-~ 77 (372)
T cd01160 2 EHD-AFRDVVRRFFAKEVAPFHHEWEKAGEVPR--EVWRKAGEQGLLGVGFPEEYGGIGGDLLSAAVLWEELARAGGS-G 77 (372)
T ss_pred hHH-HHHHHHHHHHHHhCchhHHHHHhhCCCCH--HHHHHHHhCCCCCCCCCHHHCCCCCCHHHHHHHHHHHHHhcch-H
Confidence 567 99999999999999888878888888999 9999999999999999999999999999999999999997655 4
Q ss_pred hhhhhhhHHHHHHHHhcCCHHHHHHHhHHHhcCCceEEEEeeCCCCCCCCCCceEEEEEeCCeEEEeeEeecccCCCCCC
Q 023999 114 LSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQ 193 (274)
Q Consensus 114 ~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~G~~~~~~a~te~~~g~d~~~~~~~a~~~~~g~~l~G~k~~vs~~~~a~ 193 (274)
+.+..|...+...+..+++++|+++|++++++|+.++++++|||.+|+|...+.++++++++||+|||+|.|++|+..||
T Consensus 78 ~~~~~~~~~~~~~l~~~g~~~~~~~~l~~~~~g~~~~~~a~tE~~~gsd~~~~~t~a~~~~~g~~l~G~k~~vs~~~~Ad 157 (372)
T cd01160 78 PGLSLHTDIVSPYITRAGSPEQKERVLPQMVAGKKIGAIAMTEPGAGSDLQGIRTTARKDGDHYVLNGSKTFITNGMLAD 157 (372)
T ss_pred HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhCCCeeEEEEecCCCCCCchhhCeEEEEEeCCEEEEeeEEEEecCCCccC
Confidence 55555554556678889999999999999999999999999999999999889999999999999999999999999999
Q ss_pred EEEEEEEeCCCC-CCCCeEEEEEeCCCCCeEEeccCcccCCCCCceeeEEeceeeeCCCCcccCCCcccccccC
Q 023999 194 TLVVYAKTDIKA-GSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGCNSFGE 266 (274)
Q Consensus 194 ~~lv~a~~~~~~-~~~~~~~~lv~~~~~gv~~~~~~~~~Gl~~~~~~~v~f~~v~Vp~~~llg~~g~g~~~~~~ 266 (274)
+++|.++.+++. +..++.+|+||++.|||++.++|+++|+++++++++.|+||+||++++||.+++|+..+.+
T Consensus 158 ~~~v~a~~~~~~~~~~~~~~~lv~~~~~gv~~~~~~~~~G~~~~~~~~v~~~~v~Vp~~~~lg~~~~g~~~~~~ 231 (372)
T cd01160 158 VVIVVARTGGEARGAGGISLFLVERGTPGFSRGRKLKKMGWKAQDTAELFFDDCRVPAENLLGEENKGFYYLMQ 231 (372)
T ss_pred EEEEEEEeCCCCCCCCceEEEEEeCCCCCeecCCccccccCCCCCeEEEEecceEccHHHcCCCCCchHHHHHH
Confidence 999999876542 2456889999999999999888999999999999999999999999999999988765544
No 11
>TIGR03207 cyc_hxne_CoA_dh cyclohexanecarboxyl-CoA dehydrogenase. Cyclohex-1-ene-1carboxyl-CoA is an intermediate in the anaerobic degradation of benzoyl-CoA derived from varioius aromatic compounds, in Rhodopseudomonas palustris but not Thauera aromatica. The aliphatic compound cyclohexanecarboxylate, can be converted to the same intermediate in two steps. The first step is its ligation to coenzyme A. The second is the action of this enzyme, cyclohexanecarboxyl-CoA dehydrogenase.
Probab=100.00 E-value=2.3e-40 Score=300.58 Aligned_cols=231 Identities=33% Similarity=0.550 Sum_probs=208.1
Q ss_pred CCHHHHHHHHHHHHHHHHhhcCcchhchhccCCCCCcHHHHHHHHhcCCcCCCCCccCCCCCCCHHHHHHHHHHHHhhcC
Q 023999 31 LFDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAMEEISRASG 110 (274)
Q Consensus 31 ~s~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~~l~vPe~~GG~g~~~~~~~~v~e~lg~~~~ 110 (274)
++++++ ++++.+++|+.+.+.|...+.|+.+.+|. ++|+.+.+.||+++.+|++|||.|+++.+.+.++|++++.++
T Consensus 1 ~t~~~~-~l~~~~~~~~~~~~~p~~~~~d~~~~~~~--~~~~~l~~~G~~~l~vP~~~GG~g~~~~~~~~~~e~la~~~~ 77 (372)
T TIGR03207 1 LNEDLQ-ALADTARRFARERIAPGFKERDKTRVLDR--ELMRDMGEMGFIGPELPEEHGGLGMGCLAAGVIHEQIARADL 77 (372)
T ss_pred CCHHHH-HHHHHHHHHHHHhcCcchHHHHhhCCCCH--HHHHHHHHCCCCcccCChhHCCCCCCHHHHHHHHHHHHhhCc
Confidence 467888 99999999999999998877888888998 999999999999999999999999999999999999999999
Q ss_pred cchhhhhhhhHHHHHHHHhcCCHHHHHHHhHHHhcCCceEEEEeeCCCCCCCCCCceEEEEEeCCeEEEeeEeecccCCC
Q 023999 111 SVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGP 190 (274)
Q Consensus 111 ~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~G~~~~~~a~te~~~g~d~~~~~~~a~~~~~g~~l~G~k~~vs~~~ 190 (274)
++++....+. .+...+..+++++|+++|++++++|+.+++++++||.+|+|...+.+++++++|||+|||+|.|||++.
T Consensus 78 s~~~~~~~~~-~~~~~l~~~g~~~~~~~~l~~~~~G~~~~~~a~tEp~~Gsd~~~~~t~a~~~~~g~~lnG~k~~vs~~~ 156 (372)
T TIGR03207 78 SMSYVNLLAS-LNGQILAQHARPEIAKPWLGQLIAGEALFAIALTEPRGGSDAARLRLRAERDGDDYVLNGEKTSISAAD 156 (372)
T ss_pred cHHHHHHhhh-HHHHHHHHhCCHHHHHHHHHHHhCCCeeEEEEecCCCCCcChhhCEEEEEEeCCEEEEEEEEEEEcCCC
Confidence 9876544333 555678889999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCEEEEEEEeCCC-CCCCCeEEEEEeCCCCCeEEeccCcccCCCCCceeeEEeceeeeCCCCcccCCCcccccccC
Q 023999 191 VAQTLVVYAKTDIK-AGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGCNSFGE 266 (274)
Q Consensus 191 ~a~~~lv~a~~~~~-~~~~~~~~~lv~~~~~gv~~~~~~~~~Gl~~~~~~~v~f~~v~Vp~~~llg~~g~g~~~~~~ 266 (274)
.||+++|+++.+++ .+..++.+|+||+++|||++ .+|+++|++++++++++|+||+||+++++|.++.|+..+.+
T Consensus 157 ~ad~~lv~a~~~~~~~~~~~~~~~lVp~~~~gv~~-~~~~~~G~r~~~~~~v~f~~v~Vp~~~~lg~~~~g~~~~~~ 232 (372)
T TIGR03207 157 QADAAVVFARTGSEAEGARGISAFLVPMDLPGITR-NRFDCHGQRAIGRGSIFFENVRVPADHMLGNEGQGFVQVMQ 232 (372)
T ss_pred cCCEEEEEEEcCCCCCCCCceEEEEEcCCCCCeec-CcchhccCCCCCeeEEEECceeccHHHcCCCCChhHHHHHH
Confidence 99999999997542 23346789999999999997 57999999999999999999999999999999988876554
No 12
>PTZ00461 isovaleryl-CoA dehydrogenase; Provisional
Probab=100.00 E-value=3.8e-40 Score=302.68 Aligned_cols=231 Identities=41% Similarity=0.725 Sum_probs=209.1
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhhcCcchhchhccCCCCCcHHHHHHHHhcCCcCCCCCccCCCCCCCHHHHHHHHHHHHh
Q 023999 28 TSLLFDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAMEEISR 107 (274)
Q Consensus 28 ~~~~s~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~~l~vPe~~GG~g~~~~~~~~v~e~lg~ 107 (274)
.+.++++++ ++++.+++|+.+.+.+.+.+.|..+.+|. ++|+.+++.||+++.+|++|||.|+++.+.+.++|++++
T Consensus 34 ~~~~~~~~~-~l~~~~~~~~~~~~~~~a~~~d~~~~~~~--~~~~~l~~~Gl~~l~vP~~~GG~g~~~~~~~~~~e~la~ 110 (410)
T PTZ00461 34 LYNPTPEHA-ALRETVAKFSREVVDKHAREDDINMHFNR--DLFKQLGDLGVMGVTVPEADGGAGMDAVAAVIIHHELSK 110 (410)
T ss_pred cCCCCHHHH-HHHHHHHHHHHHhCCccHHHHhhhCCCCH--HHHHHHHHCCCCcccCChhhCCCCCCHHHHHHHHHHHHh
Confidence 456888999 99999999999999998888888888999 999999999999999999999999999999999999999
Q ss_pred hcCcchhhhhhhhHHHHHHHHhcCCHHHHHHHhHHHhcCCceEEEEeeCCCCCCCCCCceEEEEEeCC-eEEEeeEeecc
Q 023999 108 ASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDG-GYIINGNKMWC 186 (274)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~G~~~~~~a~te~~~g~d~~~~~~~a~~~~~-g~~l~G~k~~v 186 (274)
.++++++.+..|.......+..+++++||++|++.+++|+++++++++||.+|+|...+.|++++++| +|+|||+|.||
T Consensus 111 ~~~s~~~~~~~~~~~~~~~l~~~g~~~qk~~~l~~~~~G~~~~~~a~tEp~~Gsd~~~~~t~a~~~~~gg~~L~G~K~~v 190 (410)
T PTZ00461 111 YDPGFCLAYLAHSMLFVNNFYYSASPAQRARWLPKVLTGEHVGAMGMSEPGAGTDVLGMRTTAKKDSNGNYVLNGSKIWI 190 (410)
T ss_pred hCchHHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHHhCCCeeEEEEecCCCCCCChHHCeEEEEEcCCCeEEEEeEEEeE
Confidence 99887766665543445567788999999999999999999999999999999999999999999765 69999999999
Q ss_pred cCCCCCCEEEEEEEeCCCCCCCCeEEEEEeCCCCCeEEeccCcccCCCCCceeeEEeceeeeCCCCcccCCCcccccccC
Q 023999 187 TNGPVAQTLVVYAKTDIKAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGCNSFGE 266 (274)
Q Consensus 187 s~~~~a~~~lv~a~~~~~~~~~~~~~~lv~~~~~gv~~~~~~~~~Gl~~~~~~~v~f~~v~Vp~~~llg~~g~g~~~~~~ 266 (274)
+|+..||+++|.++.++ ++.+|+||++.|||++.+.|+++|+++++++++.|+||+||++++||.+++|+.+..+
T Consensus 191 s~a~~Ad~~lv~a~~~~-----~~~~flVp~~~~Gv~v~~~~~~~G~r~~~~~~l~f~~v~Vp~~~~lg~~g~g~~~~~~ 265 (410)
T PTZ00461 191 TNGTVADVFLIYAKVDG-----KITAFVVERGTKGFTQGPKIDKCGMRASHMCQLFFEDVVVPAENLLGEEGKGMVGMMR 265 (410)
T ss_pred CCCccCCEEEEEEEeCC-----ceEEEEEeCCCCCeecCCCCcccCCCCCceEEEEEcceecCHHHhCCCCCccHHHHHH
Confidence 99999999999998642 4779999999999999999999999999999999999999999999999988765533
No 13
>cd01158 SCAD_SBCAD Short chain acyl-CoA dehydrogenases and eukaryotic short/branched chain acyl-CoA dehydrogenases. Short chain acyl-CoA dehydrogenase (SCAD). SCAD is a mitochondrial beta-oxidation enzyme. It catalyzes the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of SCAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. This subgroup also contains the eukaryotic short/branched chain acyl-CoA dehydrogenase(SBCAD), the bacterial butyryl-CoA dehydorgenase(BCAD) and 2-methylbutyryl-CoA dehydrogenase, which is involved in isoleucine catabolism. These enzymes are homotetramers.
Probab=100.00 E-value=6.6e-40 Score=297.47 Aligned_cols=230 Identities=45% Similarity=0.782 Sum_probs=210.9
Q ss_pred HHHHHHHHHHHHHHHhhcCcchhchhccCCCCCcHHHHHHHHhcCCcCCCCCccCCCCCCCHHHHHHHHHHHHhhcCcch
Q 023999 34 DTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAMEEISRASGSVG 113 (274)
Q Consensus 34 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~~l~vPe~~GG~g~~~~~~~~v~e~lg~~~~~~~ 113 (274)
++. ++++.+++|+.+.+.+.+.+.|+.+.+|. ++|+.|++.||+++.+|+++||.|.++.+.+.++|+++++|++++
T Consensus 2 ~~~-~~~~~~~~~~~~~~~~~a~~~d~~~~~~~--~~~~~l~~~Gl~~l~vP~e~GG~g~~~~~~~~v~~~l~~~~~s~~ 78 (373)
T cd01158 2 EHQ-MIRKTVRDFAEKEIAPLAAEMDEKGEFPR--EVIKEMAELGLMGIPIPEEYGGAGLDFLAYAIAIEELAKVDASVA 78 (373)
T ss_pred hHH-HHHHHHHHHHHHhcccchHHHhhcCCCCH--HHHHHHHhCCCCcccCCHHHCCCCCCHHHHHHHHHHHHhhCccHH
Confidence 566 99999999999988888878888888998 999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhHHHHHHHHhcCCHHHHHHHhHHHhcCCceEEEEeeCCCCCCCCCCceEEEEEeCCeEEEeeEeecccCCCCCC
Q 023999 114 LSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQ 193 (274)
Q Consensus 114 ~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~G~~~~~~a~te~~~g~d~~~~~~~a~~~~~g~~l~G~k~~vs~~~~a~ 193 (274)
+.+..|...+...+..+++++|+++|++.+++|+.+++++++||.+|++...+.+++++++|||+|||+|.|++++..||
T Consensus 79 ~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~G~~~~~~a~se~~~gs~~~~~~~~a~~~~~g~~l~G~k~~vsg~~~ad 158 (373)
T cd01158 79 VIVSVHNSLGANPIIKFGTEEQKKKYLPPLATGEKIGAFALSEPGAGSDAAALKTTAKKDGDDYVLNGSKMWITNGGEAD 158 (373)
T ss_pred HHHHHHHhHHHHHHHHhCCHHHHHHHHHHHhCCCeEEEEEecCCCCCCCHHHCEeEEEEeCCEEEEeeEEEEEcCCCcCC
Confidence 88877764556678889999999999999999999999999999999998888999999999999999999999999999
Q ss_pred EEEEEEEeCCCCCCCCeEEEEEeCCCCCeEEeccCcccCCCCCceeeEEeceeeeCCCCcccCCCcccccccC
Q 023999 194 TLVVYAKTDIKAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGCNSFGE 266 (274)
Q Consensus 194 ~~lv~a~~~~~~~~~~~~~~lv~~~~~gv~~~~~~~~~Gl~~~~~~~v~f~~v~Vp~~~llg~~g~g~~~~~~ 266 (274)
+++|.++.+++++..++.+|+||+++|||++.++|+++|+++++++++.|+||+||++++++.++.|+....+
T Consensus 159 ~~lv~a~~~~~~~~~~~~~~lvp~~~~gv~i~~~~~~~G~~g~~s~~v~~~~v~Vp~~~~lg~~~~g~~~~~~ 231 (373)
T cd01158 159 FYIVFAVTDPSKGYRGITAFIVERDTPGLSVGKKEDKLGIRGSSTTELIFEDVRVPKENILGEEGEGFKIAMQ 231 (373)
T ss_pred EEEEEEEcCCCCCCCceEEEEEcCCCCCeecCCcccccccCCCCceEEEeCcEEecHHHcCCCCCchHHHHHH
Confidence 9999998755444456889999999999999999999999999999999999999999999999988876543
No 14
>PRK12341 putative acyl-CoA dehydrogenase; Provisional
Probab=100.00 E-value=1.2e-39 Score=296.87 Aligned_cols=230 Identities=23% Similarity=0.415 Sum_probs=203.9
Q ss_pred CCCCHHHHHHHHHHHHHHHHhhcC-cchhchhccCCCCCcHHHHHHHHhcCCcCCCCCccCCCCCCCHHHHHHHHHHHHh
Q 023999 29 SLLFDDTQLQFKESVGQFARENIA-PRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAMEEISR 107 (274)
Q Consensus 29 ~~~s~~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~G~~~l~vPe~~GG~g~~~~~~~~v~e~lg~ 107 (274)
..++++++ ++++.++.|+.+.+. +...+.|+.+.+|. ++|+.+++.||+++.+|++|||.|.++.+++.++|++++
T Consensus 3 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~d~~~~~p~--~~~~~l~~~Gl~~~~vP~~~GG~g~~~~~~~~~~e~la~ 79 (381)
T PRK12341 3 FSLTEEQE-LLLASIRELITRNFPEEYFRTCDENGTYPR--EFMRALADNGISMLGVPEEFGGTPADYVTQMLVLEEVSK 79 (381)
T ss_pred CCCCHHHH-HHHHHHHHHHHHhcCchhHHHHHHhCCCCH--HHHHHHHHCCCCCcCCChhhCCCCcCHHHHHHHHHHHhh
Confidence 35788888 999999999999886 45667788888999 999999999999999999999999999999999999999
Q ss_pred hcCcchhhhhhhhHHHHHHHHhcCCHHHHHHHhHHH-hcCCceEEEEeeCCCCCCCCCCceEEEEEeCCeEEEeeEeecc
Q 023999 108 ASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKL-ISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWC 186 (274)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~-~~G~~~~~~a~te~~~g~d~~~~~~~a~~~~~g~~l~G~k~~v 186 (274)
.+.+. +.+ .+. .+...+..+|+++||++|++++ .+|+.+.++++|||..|+|...+++++++++|||+|||+|.|+
T Consensus 80 ~~~~~-~~~-~~~-~~~~~l~~~g~~~q~~~~l~~~~~~g~~~~~~a~tEp~~gsd~~~~~t~a~~~~gg~~lnG~K~~i 156 (381)
T PRK12341 80 CGAPA-FLI-TNG-QCIHSMRRFGSAEQLRKTAESTLETGDPAYALALTEPGAGSDNNSATTTYTRKNGKVYLNGQKTFI 156 (381)
T ss_pred cChhH-HHH-hhh-hhHHHHHHhCCHHHHHHHhHHHhhCCCeEEEEEecCCCCCCchhhCeeEEEEeCCEEEEEeEEEEE
Confidence 99873 333 232 4555678899999999999998 4999889999999999999999999999999999999999999
Q ss_pred cCCCCCCEEEEEEEeCCCC-CCCCeEEEEEeCCCCCeEEeccCcccCCCCCceeeEEeceeeeCCCCcccCCCccccccc
Q 023999 187 TNGPVAQTLVVYAKTDIKA-GSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGCNSFG 265 (274)
Q Consensus 187 s~~~~a~~~lv~a~~~~~~-~~~~~~~~lv~~~~~gv~~~~~~~~~Gl~~~~~~~v~f~~v~Vp~~~llg~~g~g~~~~~ 265 (274)
||+..||+++|.++.+++. +..++.+|+||+++|||++ .+|+++|+++++++.++|+||+||++++||.+++|+..+.
T Consensus 157 s~~~~Ad~~~v~a~~~~~~~~~~~~~~~lV~~~~~gv~~-~~~~~~G~~~~~~~~v~~~~v~Vp~~~~lg~~~~g~~~~~ 235 (381)
T PRK12341 157 TGAKEYPYMLVLARDPQPKDPKKAFTLWWVDSSKPGIKI-NPLHKIGWHMLSTCEVYLDNVEVEESDLVGEEGMGFLNVM 235 (381)
T ss_pred cCCccCCEEEEEEEcCCCCCCCCceEEEEEeCCCCceee-cccccccCCCCCceEEEECcEEecHHHcCCCCChHHHHHH
Confidence 9999999999999975432 2346789999999999999 6799999999999999999999999999999998876544
No 15
>cd01161 VLCAD Very long chain acyl-CoA dehydrogenase. VLCAD is an acyl-CoA dehydrogenase (ACAD), which is found in the mitochondria of eukaryotes and in some bacteria. It catalyzes the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. VLCAD acts as a homodimer.
Probab=100.00 E-value=3.7e-39 Score=296.05 Aligned_cols=231 Identities=34% Similarity=0.597 Sum_probs=204.4
Q ss_pred CCCHHHHHHHHHHHHHHHHhhcCcchhchhccCCCCCcHHHHHHHHhcCCcCCCCCccCCCCCCCHHHHHHHHHHHHhhc
Q 023999 30 LLFDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAMEEISRAS 109 (274)
Q Consensus 30 ~~s~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~~l~vPe~~GG~g~~~~~~~~v~e~lg~~~ 109 (274)
.++++++ ++++.+++|+++.+.+. ..++.+.+|. ++|+.+++.||+++.+|+++||.|+++.+++.++|++++ +
T Consensus 26 ~~~~~~~-~l~~~~~~~~~~~~~~~--~~d~~~~~~~--~~~~~l~~~Gl~~l~vP~~~GG~g~~~~~~~~v~e~l~~-~ 99 (409)
T cd01161 26 EQTEELN-MLVGPVEKFFEEVNDPA--KNDQLEKIPR--KTLTQLKELGLFGLQVPEEYGGLGLNNTQYARLAEIVGM-D 99 (409)
T ss_pred cCCHHHH-HHHHHHHHHHHHhCCch--hhccccCCCH--HHHHHHHhCCCCCCCCChhhCCCCCCHHHHHHHHHHHhh-C
Confidence 5678888 99999999999998875 3466677888 999999999999999999999999999999999999999 9
Q ss_pred CcchhhhhhhhHHHHHHHHhcCCHHHHHHHhHHHhcCCceEEEEeeCCCCCCCCCCceEEEEEe--CCeEEEeeEeeccc
Q 023999 110 GSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRV--DGGYIINGNKMWCT 187 (274)
Q Consensus 110 ~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~G~~~~~~a~te~~~g~d~~~~~~~a~~~--~~g~~l~G~k~~vs 187 (274)
+++++.+..|...+...+..+++++|+++|++++++|+.++++++|||++|+|...+.++++++ +++|+|||+|.|++
T Consensus 100 ~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~G~~~~~~a~tEp~~Gs~~~~~~t~a~~~~~g~g~~l~G~K~~vs 179 (409)
T cd01161 100 LGFSVTLGAHQSIGFKGILLFGTEAQKEKYLPKLASGEWIAAFALTEPSSGSDAASIRTTAVLSEDGKHYVLNGSKIWIT 179 (409)
T ss_pred hHHHHHHHHhhhhhHHHHHHcCCHHHHHHHhHHHhCCCeeEEEEecCCCCCCChhhCeeEEEEcCCCCEEEEEeEEEeec
Confidence 8887777666534445577899999999999999999999999999999999999899999984 45799999999999
Q ss_pred CCCCCCEEEEEEEeCC--CCC--CCCeEEEEEeCCCCCeEEeccCcccCCCCCceeeEEeceeeeCCCCcccCCCccccc
Q 023999 188 NGPVAQTLVVYAKTDI--KAG--SKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGCNS 263 (274)
Q Consensus 188 ~~~~a~~~lv~a~~~~--~~~--~~~~~~~lv~~~~~gv~~~~~~~~~Gl~~~~~~~v~f~~v~Vp~~~llg~~g~g~~~ 263 (274)
|+..||+++|.++.++ .++ .+++.+|+||++.|||++.+.|+++|+++++++++.|+||+||++++||.+++|+.+
T Consensus 180 ~~~~Ad~~lv~ar~~~~~~~g~~~~~~~~flvp~~~~gv~~~~~~~~~G~~g~~s~~v~~~~v~Vp~~~~lg~~g~g~~~ 259 (409)
T cd01161 180 NGGIADIFTVFAKTEVKDATGSVKDKITAFIVERSFGGVTNGPPEKKMGIKGSNTAEVYFEDVKIPVENVLGEVGDGFKV 259 (409)
T ss_pred CCCcCCEEEEEEEcCCCCCCCCCCCceEEEEEeCCCCCcccCCcccccCCCCCCceEEEeccEEECHHHcCCCCChHHHH
Confidence 9999999999998752 112 246789999999999999899999999999999999999999999999999988876
Q ss_pred ccC
Q 023999 264 FGE 266 (274)
Q Consensus 264 ~~~ 266 (274)
+++
T Consensus 260 ~~~ 262 (409)
T cd01161 260 AMN 262 (409)
T ss_pred HHH
Confidence 543
No 16
>TIGR03203 pimD_small pimeloyl-CoA dehydrogenase, small subunit. Members of this protein family are the PimD proteins of species such as Rhodopseudomonas palustris, Bradyrhizobium japonicum. The pimFABCDE operon encodes proteins for the metabolism of straight chain dicarboxylates of seven to fourteen carbons. Especially relevant is pimeloyl-CoA, basis of the gene symbol, as it is a catabolite of benzoyl-CoA degradation, which occurs in Rhodopseudomonas palustris.
Probab=100.00 E-value=4.1e-39 Score=292.74 Aligned_cols=230 Identities=23% Similarity=0.340 Sum_probs=198.4
Q ss_pred CCCHHHHHHHHHHHHHHHHhhcCcchh--chhccCCCCCcHHHHHHHHhcCCcCCCCCccCCCCCCCHHHHHHHHHHHHh
Q 023999 30 LLFDDTQLQFKESVGQFARENIAPRAA--NIDQSNSFPQDVNLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAMEEISR 107 (274)
Q Consensus 30 ~~s~~~~~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~G~~~l~vPe~~GG~g~~~~~~~~v~e~lg~ 107 (274)
.++++|+ ++++.+++|+.+.+.+... ..+..+.+|. ++|+++.++||+++.+|+++||.|+++.+.+.++|++++
T Consensus 3 ~~~~eq~-~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~~--~~~~~l~e~G~~~l~vPe~~GG~G~~~~~~~~v~eel~~ 79 (378)
T TIGR03203 3 DLSEEQR-LLKESVEGLLKTSYDFDSRKKYQKEKGGWSK--AVWGKLAEQGLLGLPFSEADGGFGAGSVETMIVMEALGK 79 (378)
T ss_pred CCCHHHH-HHHHHHHHHHHhhCCHHHHHHHHhccCCCCH--HHHHHHHHCCCcccccchhcCCCCCCHHHHHHHHHHHhC
Confidence 5788998 9999999999998876543 2466677998 999999999999999999999999999999999999999
Q ss_pred hcCcchhhhhhhhHHHHHHHHhcCCHHHHHHHhHHHhcCCceEEEEeeCCCCCCCCCCceEEEEEeCCeEEEeeEeeccc
Q 023999 108 ASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCT 187 (274)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~G~~~~~~a~te~~~g~d~~~~~~~a~~~~~g~~l~G~k~~vs 187 (274)
++.+.+. ..+...+..++..+|+++||++||+++++|+.+.+++++||++|+|...+.|++++++|+|+|||+|.||+
T Consensus 80 ~~~~~~~--~~~~~~~~~~l~~~g~~~qk~~~L~~l~~G~~~~a~a~tEp~~gsd~~~~~t~a~~~g~~~~l~G~K~~vt 157 (378)
T TIGR03203 80 ALVLEPY--LATVVIGGGFLRHAGSAAQKAAHLPGIIDGSKTFAFAQLEKNSRYDLGDVSTTAKKTGDGWVIDGEKFVVL 157 (378)
T ss_pred cccchHH--HHHHHHHHHHHHHcCCHHHHHHHHHHHhCCChhheeeecCCCCCCCcccceEEEEEcCCEEEEEeEEEEec
Confidence 8765432 22222445578889999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCEEEEEEEeCCCC-CCCCeEEEEEeCCCCCeEEeccCcccCCCCCceeeEEeceeeeCCCCcccCCCcccccccC
Q 023999 188 NGPVAQTLVVYAKTDIKA-GSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGCNSFGE 266 (274)
Q Consensus 188 ~~~~a~~~lv~a~~~~~~-~~~~~~~~lv~~~~~gv~~~~~~~~~Gl~~~~~~~v~f~~v~Vp~~~llg~~g~g~~~~~~ 266 (274)
++..||+++|+++.++++ +.+++++|+||++.|||++.+.+.++|+ +++++.|+||+||+++++|.+++|++++++
T Consensus 158 ~a~~Ad~~lv~ar~~~~~~~~~g~~~flV~~~~~Gv~~~~~~~~~g~---~~~~l~fd~v~vp~~~~lg~~~~g~~~~~~ 234 (378)
T TIGR03203 158 NGETADTLIVTARTKGARRDRTGIGVFLVPAGAKGVTIKGYPTQDGL---HAADITFTGVVVGADAAIGDPENALPLIER 234 (378)
T ss_pred CCccCCEEEEEEecCCCCCCCCceEEEEEECCCCCceeccccccCCC---ceeeEEECCCcccHHhhcCCcchHHHHHHH
Confidence 999999999999975432 3457899999999999999665555554 568999999999999999999999876654
Q ss_pred C
Q 023999 267 P 267 (274)
Q Consensus 267 ~ 267 (274)
.
T Consensus 235 ~ 235 (378)
T TIGR03203 235 V 235 (378)
T ss_pred H
Confidence 3
No 17
>PLN02526 acyl-coenzyme A oxidase
Probab=100.00 E-value=3.4e-38 Score=289.82 Aligned_cols=225 Identities=31% Similarity=0.546 Sum_probs=201.7
Q ss_pred CCCHHHHHHHHHHHHHHHHhhcCcchhchhccCCCCCcHHHHHHHHhcCCcCCCCCccCCCCCCCHHHHHHHHHHHHhhc
Q 023999 30 LLFDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAMEEISRAS 109 (274)
Q Consensus 30 ~~s~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~~l~vPe~~GG~g~~~~~~~~v~e~lg~~~ 109 (274)
.++++++ ++++.+++|+.+.+.+...+.+....+|. ++|+++.++||+++.+ +++||.|+++.+.+.++|++|+.|
T Consensus 28 ~~t~~~~-~l~~~~~~f~~~~~~~~~~~~~~~~~~p~--~~~~~l~~~G~~~~~v-~~~GG~G~~~~~~~~~~e~la~~~ 103 (412)
T PLN02526 28 LLTPEEQ-ALRKRVRECMEKEVAPIMTEYWEKAEFPF--HIIPKLGSLGIAGGTI-KGYGCPGLSITASAIATAEVARVD 103 (412)
T ss_pred CCCHHHH-HHHHHHHHHHHHhcccchHHHHHhCCCCH--HHHHHHHHCCCCcCcc-cccCCCCcCHHHHHHHHHHHHhhC
Confidence 3788888 99999999999999887766666677888 9999999999999999 999999999999999999999999
Q ss_pred CcchhhhhhhhHHHHHHHHhcCCHHHHHHHhHHHhcCCceEEEEeeCCCCCCCCCCceEEEEEeCCeEEEeeEeecccCC
Q 023999 110 GSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNG 189 (274)
Q Consensus 110 ~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~G~~~~~~a~te~~~g~d~~~~~~~a~~~~~g~~l~G~k~~vs~~ 189 (274)
++++..+..|...+...+..+++++||++|++++++|+++++++++||+.|+|...+.+++++++|||+|||+|.|++++
T Consensus 104 ~s~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~G~~~~~~a~tEp~~Gsd~~~~~t~a~~~~gg~~lnG~K~~vs~~ 183 (412)
T PLN02526 104 ASCSTFILVHSSLAMLTIALCGSEAQKQKYLPSLAQLDTVACWALTEPDYGSDASSLNTTATKVEGGWILNGQKRWIGNS 183 (412)
T ss_pred chHHHHHHHhhhhHHHHHHHhCCHHHHHHHHHHHhCCCeEEEEEecCCCCCCChhhCeeEEEEECCEEEEEEEEeeecCC
Confidence 88765555555455567889999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCEEEEEEEeCCCCCCCCeEEEEEeCCCCCeEEeccCcccCCCCCceeeEEeceeeeCCCCcccCCCcccc
Q 023999 190 PVAQTLVVYAKTDIKAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGCN 262 (274)
Q Consensus 190 ~~a~~~lv~a~~~~~~~~~~~~~~lv~~~~~gv~~~~~~~~~Gl~~~~~~~v~f~~v~Vp~~~llg~~g~g~~ 262 (274)
..||+++|.++.+++ .++.+|+||++.|||++.+.|+++|++++++++++|+||+||++++++..+ ++.
T Consensus 184 ~~Ad~~lv~a~~~~~---~~~~~flV~~~~~Gv~~~~~~~~~G~r~t~s~~v~f~~v~Vp~~~~l~~~~-~~~ 252 (412)
T PLN02526 184 TFADVLVIFARNTTT---NQINGFIVKKGAPGLKATKIENKIGLRMVQNGDIVLKDVFVPDEDRLPGVN-SFQ 252 (412)
T ss_pred CccCEEEEEEEeCCC---CCeEEEEEcCCCCCeEcCCCCCccCcCCCCeeEEEEeeEEECHHHhCCCcc-cHH
Confidence 999999999997532 357889999999999999999999999999999999999999999997643 443
No 18
>TIGR03204 pimC_large pimeloyl-CoA dehydrogenase, large subunit. Members of this protein family are the PimC proteins of species such as Rhodopseudomonas palustris and Bradyrhizobium japonicum. The pimFABCDE operon encodes proteins for the metabolism of straight chain dicarboxylates of seven to fourteen carbons. Especially relevant is pimeloyl-CoA, basis of the gene symbol, as it is a catabolite of benzoyl-CoA degradation, which occurs in Rhodopseudomonas palustris.
Probab=100.00 E-value=9.2e-38 Score=285.50 Aligned_cols=232 Identities=25% Similarity=0.450 Sum_probs=196.1
Q ss_pred CCCCHHHHHHHHHHHHHHHHhhcCcchhch-hccCCCCC--cHHHHHHHHhcCCcCCCCCccCCCCCCCHHHHHHHHHHH
Q 023999 29 SLLFDDTQLQFKESVGQFARENIAPRAANI-DQSNSFPQ--DVNLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAMEEI 105 (274)
Q Consensus 29 ~~~s~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~--~~~~~~~l~~~G~~~l~vPe~~GG~g~~~~~~~~v~e~l 105 (274)
..++++|+ ++++++++|+.+.+.+...+. .+.+.+|. ..++|+.+.++||+++.+|++|||.|+++.+.+.++|++
T Consensus 2 ~~lteeq~-~l~~~~r~f~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~l~e~G~~gl~vPe~~GG~G~~~~~~~~v~eel 80 (395)
T TIGR03204 2 LAFSKEEQ-AFRDEVRSFFKDNVPADTRQKLVEGRHLTKDEMVTWWRILNKKGWGVSHWPKQYGGTGWTSVQHYIFNEEL 80 (395)
T ss_pred CCCCHHHH-HHHHHHHHHHHHhCChhhhhhhhccCCCChHHHHHHHHHHHhCCCCCCCCCcccCCCCCCHHHHHHHHHHH
Confidence 35789999 999999999999988775442 23333442 137999999999999999999999999999999999999
Q ss_pred HhhcCcchhhhhhhhHHHHHHHHhcCCHHHHHHHhHHHhcCCceEEEEeeCCCCCCCCCCceEEEEEeCCeEEEeeEeec
Q 023999 106 SRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMW 185 (274)
Q Consensus 106 g~~~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~G~~~~~~a~te~~~g~d~~~~~~~a~~~~~g~~l~G~k~~ 185 (274)
|+++.+.++....+ .+...+..+++++||++|++++++|+.+.+++++||.+|+|...+.|++++++|+|+|||+|.|
T Consensus 81 g~~~~~~~~~~~~~--~~~~~l~~~g~~~q~~~~L~~i~~G~~~~~~a~tEp~~gsd~~~~~t~a~~~g~~~~LnG~K~~ 158 (395)
T TIGR03204 81 QSAPAPQPLAFGVS--MVGPVIYTFGNEEQKKRFLPRIANVDDWWCQGFSEPGSGSDLASLKTKAEKKGDKWIINGQKTW 158 (395)
T ss_pred HhcCCCccchhHhH--hhHHHHHHhCCHHHHHHHHHHHhCCchheEeEecCCCCCCChhhceEEEEEcCCEEEEeeEEEe
Confidence 99998877543322 3344678889999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCEEEEEEEeCCCC-CCCCeEEEEEeCCCCCeEEeccCcccCCCCCceeeEEeceeeeCCCCcccCCCcccccc
Q 023999 186 CTNGPVAQTLVVYAKTDIKA-GSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGCNSF 264 (274)
Q Consensus 186 vs~~~~a~~~lv~a~~~~~~-~~~~~~~~lv~~~~~gv~~~~~~~~~Gl~~~~~~~v~f~~v~Vp~~~llg~~g~g~~~~ 264 (274)
|+++..||+++|.++.++++ +.+++.+|+||.+.|||++.+.....| +.++++|.|+||+||+++++|.++.|+.++
T Consensus 159 vt~a~~Ad~~lv~a~~~~~~~~~~g~~~flV~~~~~Gv~~~~~~~~~~--~~~~~~v~f~~v~Vp~~~~lg~~~~g~~~~ 236 (395)
T TIGR03204 159 TTLAQHADWIFCLCRTDPTAKKQMGISFILVDMKSKGITVRPIQTIDG--GVEVNEVFFDDVEVPYENLVGEENKGWDYA 236 (395)
T ss_pred ecCCccCCeEEEEEEeCCCCCCCCCeEEEEEeCCCCCeEecChhhccC--CCceeEEEEcceEEcHHHcCCCCCchHHHH
Confidence 99999999999999865322 235688999999999999965444433 678999999999999999999988888755
Q ss_pred c
Q 023999 265 G 265 (274)
Q Consensus 265 ~ 265 (274)
+
T Consensus 237 ~ 237 (395)
T TIGR03204 237 K 237 (395)
T ss_pred H
Confidence 4
No 19
>cd01155 ACAD_FadE2 Acyl-CoA dehydrogenases similar to fadE2. FadE2-like Acyl-CoA dehydrogenase (ACAD). Acyl-CoA dehydrogenases (ACAD) catalyze the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. The ACAD family includes the eukaryotic beta-oxidation, as well as amino acid catabolism enzymes. These enzymes share high sequence similarity, but differ in their substrate specificities. ACAD's are generally homotetramers and have an active site glutamate at a conserved position.
Probab=100.00 E-value=2.2e-37 Score=283.03 Aligned_cols=232 Identities=25% Similarity=0.373 Sum_probs=193.0
Q ss_pred HHHHHHHHHHHHHHhhcCcchhchhccC-------CCCC--cHHHHHHHHhcCCcCCCCCccCCCCCCCHHHHHHHHHHH
Q 023999 35 TQLQFKESVGQFARENIAPRAANIDQSN-------SFPQ--DVNLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAMEEI 105 (274)
Q Consensus 35 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~-------~~~~--~~~~~~~l~~~G~~~l~vPe~~GG~g~~~~~~~~v~e~l 105 (274)
.+ ++++.+++|+++.+.|...+.++.+ .+|. .+++|+.++++||+++.+|++|||.|+++.+++.++|++
T Consensus 3 ~~-~~~~~~r~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~l~~P~~~GG~g~~~~~~~~v~e~l 81 (394)
T cd01155 3 AQ-ELRARVKAFMEEHVYPAEQEFLEYYAEGGDRWWTPPPIIEKLKAKAKAEGLWNLFLPEVSGLSGLTNLEYAYLAEET 81 (394)
T ss_pred HH-HHHHHHHHHHHHhcCccHHHHHhhcccccccccCCchhHHHHHHHHHhCCCCCCCCChhhCCCCcCHHHHHHHHHHH
Confidence 45 8999999999999998766665421 1332 138999999999999999999999999999999999999
Q ss_pred Hhhc-CcchhhhhhhhHHHHHHHHhcCCHHHHHHHhHHHhcCCceEEEEeeCCC-CCCCCCCceEEEEEeCCeEEEeeEe
Q 023999 106 SRAS-GSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPN-AGSDVVGMKCKADRVDGGYIINGNK 183 (274)
Q Consensus 106 g~~~-~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~G~~~~~~a~te~~-~g~d~~~~~~~a~~~~~g~~l~G~k 183 (274)
++++ .+.++....+...+...+..+++++|+++|++++++|++++++++|||. +|+|...+.+++++++|||+|||+|
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~G~~~~~~a~tE~~~~gsd~~~~~t~a~~~~~g~~LnG~k 161 (394)
T cd01155 82 GRSFFAPEVFNCQAPDTGNMEVLHRYGSEEQKKQWLEPLLDGKIRSAFAMTEPDVASSDATNIECSIERDGDDYVINGRK 161 (394)
T ss_pred hhhcccchheeecccccccHHHHHHhCCHHHHHHHHHHHhCCCeEEEEEeCCCCCCCCchhhCEEEEEEECCEEEEEEEE
Confidence 9986 3333222222212345788899999999999999999999999999997 6789888999999999999999999
Q ss_pred ecccCCCC--CCEEEEEEEeCCCC--CCCCeEEEEEeCCCCCeEEeccCcccCCCC--CceeeEEeceeeeCCCCcccCC
Q 023999 184 MWCTNGPV--AQTLVVYAKTDIKA--GSKGITAFIIEKGMPGFSTAQKLDKLGMRG--SDTCELVFENCFVPNENVLGQE 257 (274)
Q Consensus 184 ~~vs~~~~--a~~~lv~a~~~~~~--~~~~~~~~lv~~~~~gv~~~~~~~~~Gl~~--~~~~~v~f~~v~Vp~~~llg~~ 257 (274)
.|+||+.+ +++++|.++.++++ +..++.+|+||++.||+++.++|+++|+++ +++++|.|+||+||++++|+.+
T Consensus 162 ~~vs~~~~~~a~~~~v~a~~~~~~~~~~~~~~~flVp~~~~Gv~i~~~~~~~G~r~~~t~s~~v~f~dv~Vp~~~~lg~~ 241 (394)
T cd01155 162 WWSSGAGDPRCKIAIVMGRTDPDGAPRHRQQSMILVPMDTPGVTIIRPLSVFGYDDAPHGHAEITFDNVRVPASNLILGE 241 (394)
T ss_pred EEEcCCCCCCCCEEEEEEEeCCCcCCCCCceEEEEEeCCCCCeEeeccccccCCCCCCCCeeEEEEccEEecHHHcCCCC
Confidence 99999954 78999999875432 234688999999999999988999999997 5789999999999999999999
Q ss_pred CcccccccCC
Q 023999 258 GKGCNSFGEP 267 (274)
Q Consensus 258 g~g~~~~~~~ 267 (274)
++|+.++...
T Consensus 242 ~~g~~~~~~~ 251 (394)
T cd01155 242 GRGFEIAQGR 251 (394)
T ss_pred ChHHHHHHHH
Confidence 8888765443
No 20
>cd01152 ACAD_fadE6_17_26 Putative acyl-CoA dehydrogenases similar to fadE6, fadE17, and fadE26. Putative acyl-CoA dehydrogenases (ACAD). Mitochondrial acyl-CoA dehydrogenases (ACAD) catalyze the alpha, beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. The ACD family includes the eukaryotic beta-oxidation, as well as amino acid catabolism enzymes. These enzymes share high sequence similarity, but differ in their substrate specificities. The mitochondrial ACD's are generally homotetramers and have an active site glutamate at a conserved position.
Probab=100.00 E-value=2.6e-37 Score=281.30 Aligned_cols=227 Identities=23% Similarity=0.402 Sum_probs=197.5
Q ss_pred HHHHHHHHHHHHHHHhhcCcchhch-----hccCCCCCcHHHHHHHHhcCCcCCCCCccCCCCCCCHHHHHHHHHHHHhh
Q 023999 34 DTQLQFKESVGQFARENIAPRAANI-----DQSNSFPQDVNLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAMEEISRA 108 (274)
Q Consensus 34 ~~~~~l~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~l~~~G~~~l~vPe~~GG~g~~~~~~~~v~e~lg~~ 108 (274)
+|+ ++++.+++|+++.+.|..... +..+.+|. ++|+.|+++||+++.+|+++||.|.++.+++.++|++++.
T Consensus 2 ~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~Gl~~l~vP~~~GG~g~~~~~~~~~~e~l~~~ 78 (380)
T cd01152 2 SEE-AFRAEVRAWLAAHLPPELREESALGYREGREDRR--RWQRALAAAGWAAPGWPKEYGGRGASLMEQLIFREEMAAA 78 (380)
T ss_pred cHH-HHHHHHHHHHHhcCCccccccccccccccchHHH--HHHHHHHhCCCCccCCChhhCCCCCCHHHHHHHHHHHHhc
Confidence 567 999999999999988875432 33455777 8999999999999999999999999999999999999999
Q ss_pred cCcchhhhhhhhHHHHHHHHhcCCHHHHHHHhHHHhcCCceEEEEeeCCCCCCCCCCceEEEEEeCCeEEEeeEeecccC
Q 023999 109 SGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTN 188 (274)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~G~~~~~~a~te~~~g~d~~~~~~~a~~~~~g~~l~G~k~~vs~ 188 (274)
+.++++.+..+. .....+..+++++|+++|++++++|+.+.++++|||..|+|...+.++++++++||+|||+|.|+++
T Consensus 79 ~~~~~~~~~~~~-~~~~~l~~~g~~~~~~~~l~~~~~g~~~~~~a~tE~~~gsd~~~~~t~a~~~~~g~~L~G~K~~it~ 157 (380)
T cd01152 79 GAPVPFNQIGID-LAGPTILAYGTDEQKRRFLPPILSGEEIWCQGFSEPGAGSDLAGLRTRAVRDGDDWVVNGQKIWTSG 157 (380)
T ss_pred CCCcccchhhHH-HHHHHHHHhCCHHHHHHHhHHHhCCchhheeecCCCCCCcchhhCeeeEEEcCCeEEEecEEEEEcC
Confidence 999887522222 4455788899999999999999999998999999999999998999999999999999999999999
Q ss_pred CCCCCEEEEEEEeCCC-CCCCCeEEEEEeCCCCCeEEeccCcccCCCCCceeeEEeceeeeCCCCcccCCCcccccccC
Q 023999 189 GPVAQTLVVYAKTDIK-AGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGCNSFGE 266 (274)
Q Consensus 189 ~~~a~~~lv~a~~~~~-~~~~~~~~~lv~~~~~gv~~~~~~~~~Gl~~~~~~~v~f~~v~Vp~~~llg~~g~g~~~~~~ 266 (274)
+..||+++|+++.+++ ++..++.+|+||++.||+++.+.|+++| ++.++++.|+||+||++++||.+++|+.+..+
T Consensus 158 ~~~ad~~lv~a~~~~~~~~~~~~~~~lVp~~~~Gv~~~~~~~~~g--~~~~~~l~f~~v~Vp~~~~lg~~~~g~~~~~~ 234 (380)
T cd01152 158 AHYADWAWLLVRTDPEAPKHRGISILLVDMDSPGVTVRPIRSING--GEFFNEVFLDDVRVPDANRVGEVNDGWKVAMT 234 (380)
T ss_pred ccccCEEEEEEEeCCCccCcCCeEEEEEeCCCCceEeeehhhccC--CCCcceEEecCcCcchhcccCCCCchHHHHHH
Confidence 9999999999987543 2234688999999999999988888877 56789999999999999999999988876543
No 21
>PRK09463 fadE acyl-CoA dehydrogenase; Reviewed
Probab=100.00 E-value=7.9e-37 Score=294.70 Aligned_cols=244 Identities=24% Similarity=0.407 Sum_probs=198.4
Q ss_pred hccccccccCCCCCCCHHHHHHHHHH-HHHHHHhhcCcchhchhccCCCCCcHHHHHHHHhcCCcCCCCCccCCCCCCCH
Q 023999 17 KKQKHSAAFSSTSLLFDDTQLQFKES-VGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEYGGLGLGY 95 (274)
Q Consensus 17 ~~~~~~~~~~~~~~~s~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~~l~vPe~~GG~g~~~ 95 (274)
..++...+++. ..+|+|++ ++++. +++|+.. +. .....++.+.+|. ++|+.++++||+++.+|++|||.|++.
T Consensus 66 ~~~~~l~~~p~-~~Ls~ee~-~~~d~~v~~l~~~-~~-~~~~~~~~~~~P~--e~w~~L~e~G~~gl~IPeeyGG~Gls~ 139 (777)
T PRK09463 66 PDWKKLLNYPK-PTLTAEEQ-AFLDGPVEELCRM-VN-DWQITHELADLPP--EVWQFIKEHGFFGMIIPKEYGGLEFSA 139 (777)
T ss_pred CChHHhcCCCC-CCCCHHHH-HHHHHHHHHHHHH-HH-HHHHhccccCCCH--HHHHHHHHCCCCcCCCchhhCCCCCCH
Confidence 33444444433 34789999 99996 7777542 21 1122233467898 999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhcCcchhhhhhhhHHH-HHHHHhcCCHHHHHHHhHHHhcCCceEEEEeeCCCCCCCCCCceEE-----
Q 023999 96 LYHCIAMEEISRASGSVGLSYGAHSNLC-INQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCK----- 169 (274)
Q Consensus 96 ~~~~~v~e~lg~~~~~~~~~~~~~~~~~-~~~l~~~g~~~q~~~~l~~~~~G~~~~~~a~te~~~g~d~~~~~~~----- 169 (274)
.+.+.++|++++++.+++..+..+..++ ..+|..+|+++||++|||++++|+.++|+++|||++|||...+.++
T Consensus 140 ~~~a~v~eeLg~~~~s~a~~~~v~~slg~~~lL~~~GteeQK~~yLp~La~Ge~i~afAlTEP~aGSDaa~i~Tta~~~~ 219 (777)
T PRK09463 140 YAHSRVLQKLASRSGTLAVTVMVPNSLGPGELLLHYGTDEQKDHYLPRLARGEEIPCFALTSPEAGSDAGSIPDTGVVCK 219 (777)
T ss_pred HHHHHHHHHHHhhCcchhHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhCCCceeEEEecCCCcCCCcccccccceeee
Confidence 9999999999999888765555554344 3578899999999999999999999999999999999999887754
Q ss_pred EEEeCC---eEEEeeEeecccCCCCCCEEEEEEEe-CCC-----CCCCCeEEEEEeCCCCCeEEeccCcccCCCCCceee
Q 023999 170 ADRVDG---GYIINGNKMWCTNGPVAQTLVVYAKT-DIK-----AGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCE 240 (274)
Q Consensus 170 a~~~~~---g~~l~G~k~~vs~~~~a~~~lv~a~~-~~~-----~~~~~~~~~lv~~~~~gv~~~~~~~~~Gl~~~~~~~ 240 (274)
++++++ ||+|||+|.|||++..||+++|+++. +++ +++.++++|+||++.|||++.+.+.++|++ ..+++
T Consensus 220 a~~dGd~~~g~vLNG~K~~IT~a~~Ad~l~V~ar~~dp~~~~g~~~~~Git~fLVp~d~pGV~ig~~~~~lG~r-~~~g~ 298 (777)
T PRK09463 220 GEWQGEEVLGMRLTWNKRYITLAPIATVLGLAFKLYDPDGLLGDKEDLGITCALIPTDTPGVEIGRRHFPLNVP-FQNGP 298 (777)
T ss_pred eeecCCcccceEEEEEEEeeCCCCccCEEEEEEEecCcccccCCCCCCceEEEEEECCCCCeEecccccccCcc-cccce
Confidence 344565 69999999999999999999999885 322 234578999999999999998889999998 56899
Q ss_pred EEeceeeeCCCCcccCC---CcccccccCC
Q 023999 241 LVFENCFVPNENVLGQE---GKGCNSFGEP 267 (274)
Q Consensus 241 v~f~~v~Vp~~~llg~~---g~g~~~~~~~ 267 (274)
+.|+||+||.+++||.+ |+|++++++.
T Consensus 299 v~fddV~VP~d~lLG~~~~~G~G~~~l~~~ 328 (777)
T PRK09463 299 TRGKDVFIPLDYIIGGPKMAGQGWRMLMEC 328 (777)
T ss_pred EEeeeeecCHHHhcccccccChHHHHHHHH
Confidence 99999999999999974 8999887654
No 22
>PRK13026 acyl-CoA dehydrogenase; Reviewed
Probab=100.00 E-value=2.7e-36 Score=290.11 Aligned_cols=232 Identities=24% Similarity=0.363 Sum_probs=190.9
Q ss_pred CCCHHHHHHHHH-HHHHHHHhhcCcchhchhccCCCCCcHHHHHHHHhcCCcCCCCCccCCCCCCCHHHHHHHHHHHHhh
Q 023999 30 LLFDDTQLQFKE-SVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAMEEISRA 108 (274)
Q Consensus 30 ~~s~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~~l~vPe~~GG~g~~~~~~~~v~e~lg~~ 108 (274)
.+++|++ ++.+ .++.++. .+.. ....++.+.+|. ++|+.+++.||+++.+|++|||.|.+..+.+.++|+++++
T Consensus 77 ~l~~eeq-~fl~~~v~~l~~-~~~e-~~~~~~~~~~P~--evw~~Lae~Gl~gl~IPeeyGGlG~s~~~~a~V~eela~~ 151 (774)
T PRK13026 77 TLTAEEQ-AFIDNEVETLLT-MLDD-WDIVQNRKDLPP--EVWDYLKKEGFFALIIPKEYGGKGFSAYANSTIVSKIATR 151 (774)
T ss_pred ccCHHHH-HHHHHHHHHHHh-hhhh-hhhhhhhcCCCH--HHHHHHHHCCCCcCCCChhhCCCCCCHHHHHHHHHHHHHh
Confidence 4677777 5555 5677744 2222 222345678999 9999999999999999999999999999999999999998
Q ss_pred cCcchhhhhhhhHHH-HHHHHhcCCHHHHHHHhHHHhcCCceEEEEeeCCCCCCCCCCceEEEE-----EeCC---eEEE
Q 023999 109 SGSVGLSYGAHSNLC-INQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKAD-----RVDG---GYII 179 (274)
Q Consensus 109 ~~~~~~~~~~~~~~~-~~~l~~~g~~~q~~~~l~~~~~G~~~~~~a~te~~~g~d~~~~~~~a~-----~~~~---g~~l 179 (274)
+.+++..+..+..++ ..+|..+|+++||++|||++++|+.++|+++|||++|||..+++++++ ++++ ||+|
T Consensus 152 ~~s~a~~~~v~~slg~~~lL~~~GTeEQK~~yLP~LAsGe~i~afAlTEP~aGSDaasi~Ttav~t~a~~dGd~~~gwvL 231 (774)
T PRK13026 152 SVSAAVTVMVPNSLGPGELLTHYGTQEQKDYWLPRLADGTEIPCFALTGPEAGSDAGAIPDTGIVCRGEFEGEEVLGLRL 231 (774)
T ss_pred ccchHHHHHHHHHHHHHHHHHHhCCHHHHHhhhHHHhCCCeEEEEEecCCCCCCchhcccceeeeeeeeecCCccccEEE
Confidence 887765554444343 457888999999999999999999999999999999999988876554 4566 6999
Q ss_pred eeEeecccCCCCCCEEEEEEEe-CCC-----CCCCCeEEEEEeCCCCCeEEeccCcccCCCCCceeeEEeceeeeCCCCc
Q 023999 180 NGNKMWCTNGPVAQTLVVYAKT-DIK-----AGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENV 253 (274)
Q Consensus 180 ~G~k~~vs~~~~a~~~lv~a~~-~~~-----~~~~~~~~~lv~~~~~gv~~~~~~~~~Gl~~~~~~~v~f~~v~Vp~~~l 253 (274)
||+|.|||+++.||+++|.++. +++ ++..++++|+||++.|||++.+.++++|++.. ++++.|+||+||.+++
T Consensus 232 NG~K~~IT~A~~Ad~~~v~ar~~dpd~~~g~~~~~GiT~fLVp~d~pGV~ig~~~~~lG~~~~-~g~v~fdDV~VP~d~l 310 (774)
T PRK13026 232 TWDKRYITLAPVATVLGLAFKLRDPDGLLGDKKELGITCALIPTDHPGVEIGRRHNPLGMAFM-NGTTRGKDVFIPLDWI 310 (774)
T ss_pred EEEEEeecCccccCEEEEEEEeeCccccccCCCCCceEEEEEECCCCCeEeeccccccccCcc-cceEEEeeeEccHHHh
Confidence 9999999999999999887764 322 23457899999999999999888999999875 5899999999999999
Q ss_pred ccCC---CcccccccCC
Q 023999 254 LGQE---GKGCNSFGEP 267 (274)
Q Consensus 254 lg~~---g~g~~~~~~~ 267 (274)
||.+ |+|++++++.
T Consensus 311 LG~~~~~G~G~~~l~~~ 327 (774)
T PRK13026 311 IGGPDYAGRGWRMLVEC 327 (774)
T ss_pred cCCcccCChHHHHHHHH
Confidence 9975 8898876653
No 23
>cd01153 ACAD_fadE5 Putative acyl-CoA dehydrogenases similar to fadE5. Putative acyl-CoA dehydrogenase (ACAD). Mitochondrial acyl-CoA dehydrogenases (ACAD) catalyze the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. The ACD family includes the eukaryotic beta-oxidation, as well as amino acid catabolism enzymes. These enzymes share high sequence similarity, but differ in their substrate specificities. The mitochondrial ACD's are generally homotetramers and have an active site glutamate at a conserved position.
Probab=100.00 E-value=9.9e-36 Score=273.18 Aligned_cols=221 Identities=31% Similarity=0.526 Sum_probs=192.0
Q ss_pred HHHHHHHHHhhcCcchhchhccCC--------CCCc-HHHHHHHHhcCCcCCCCCccCCCCCCCHHHHHHHHHHHHhhcC
Q 023999 40 KESVGQFARENIAPRAANIDQSNS--------FPQD-VNLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAMEEISRASG 110 (274)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~-~~~~~~l~~~G~~~l~vPe~~GG~g~~~~~~~~v~e~lg~~~~ 110 (274)
++++++|+.+.+.+.+.+.|+.+. +|.. .++|++|.+.||+++.+|+++||.|.++.+...++|+++++|.
T Consensus 2 ~~~~~~~~~~~~~~~a~~~d~~~~~~~~~~~~~p~~~~e~~~~l~~~Gl~~~~vP~e~GG~g~~~~~~~~~~e~l~~~~~ 81 (407)
T cd01153 2 LEEVARLAENVLAPLNADGDREGPVFDDGRVVVPPPFKEALDAFAEAGWMALGVPEEYGGQGLPITVYSALAEIFSRGDA 81 (407)
T ss_pred hHHHHHHHHHHhhhhHHhHhccCCcccCCceEcChhHHHHHHHHHHCCCCCCCCccccCCCCCCHHHHHHHHHHHHhhhH
Confidence 678899999999988777776554 7842 3789999999999999999999999999999999999999999
Q ss_pred cchhhhhhhhHHHHHHHHhcCCHHHHHHHhHHHhcCCceEEEEeeCCCCCCCCCCceEEEEEe-CCeEEEeeEeecccCC
Q 023999 111 SVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRV-DGGYIINGNKMWCTNG 189 (274)
Q Consensus 111 ~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~G~~~~~~a~te~~~g~d~~~~~~~a~~~-~~g~~l~G~k~~vs~~ 189 (274)
++++.+..+ .+...+..+++++|+++|++.+++|+.+.++++|||++|+|...+.|+++++ +|+|+|||+|.|+|++
T Consensus 82 s~~~~~~~~--~~~~~l~~~g~~~~~~~~l~~i~~G~~~~~~a~tEp~~gsd~~~~~t~a~~~~~ggy~l~G~K~~is~~ 159 (407)
T cd01153 82 PLMYASGTQ--GAAATLLAHGTEAQREKWIPRLAEGEWTGTMCLTEPDAGSDLGALRTKAVYQADGSWRINGVKRFISAG 159 (407)
T ss_pred HHHHHHHHh--HHHHHHHHhCCHHHHHHHHHHHhCCCeeEEEEecCCCCCCCcccceEEEEECCCCcEEEeeEEEEEeCC
Confidence 987765544 3445677889999999999999999999999999999999999999999998 5689999999999999
Q ss_pred CCC----CEEEEEEEeCCC-CCCCCeEEEEEeCCC-----CCeEEeccCcccCCCCCceeeEEeceeeeCCCCcccCCCc
Q 023999 190 PVA----QTLVVYAKTDIK-AGSKGITAFIIEKGM-----PGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGK 259 (274)
Q Consensus 190 ~~a----~~~lv~a~~~~~-~~~~~~~~~lv~~~~-----~gv~~~~~~~~~Gl~~~~~~~v~f~~v~Vp~~~llg~~g~ 259 (274)
..| ++++|+++..++ ++.+++.+|+||++. |||++.+.|+++|+++++++++.|+||+|| +||.++.
T Consensus 160 ~~a~~~~~~~~v~a~~~~~~~~~~~~~~flVp~~~~~~~~~gv~i~~~~~~~G~r~t~s~~v~f~~v~Vp---~lg~~~~ 236 (407)
T cd01153 160 EHDMSENIVHLVLARSEGAPPGVKGLSLFLVPKFLDDGERNGVTVARIEEKMGLHGSPTCELVFDNAKGE---LIGEEGM 236 (407)
T ss_pred CcccccccEEEEEEeCCCCCCCCCceEEEEEeccCcCCCCCCeEeccchhccCCCCCCeEEEEEcCEEEe---eeCCCCc
Confidence 876 577888886532 234468899999987 899999999999999999999999999999 8999888
Q ss_pred cccccc
Q 023999 260 GCNSFG 265 (274)
Q Consensus 260 g~~~~~ 265 (274)
|+++..
T Consensus 237 g~~~~~ 242 (407)
T cd01153 237 GLAQMF 242 (407)
T ss_pred cHHHHH
Confidence 876544
No 24
>cd01163 DszC Dibenzothiophene (DBT) desulfurization enzyme C. DszC is a flavin reductase dependent enzyme, which catalyzes the first two steps of DBT desulfurization in mesophilic bacteria. DszC converts DBT to DBT-sulfoxide, which is then converted to DBT-sulfone. Bacteria with this enzyme are candidates for the removal of organic sulfur compounds from fossil fuels, which pollute the environment. An equivalent enzyme tdsC, is found in thermophilic bacteria. This alignment also contains a closely related uncharacterized subgroup.
Probab=100.00 E-value=7.4e-36 Score=271.48 Aligned_cols=210 Identities=22% Similarity=0.321 Sum_probs=185.6
Q ss_pred HHHHHHhhcCcchhchhccCCCCCcHHHHHHHHhcCCcCCCCCccCCCCCCCHHHHHHHHHHHHhhcCcchhhhhhhhHH
Q 023999 43 VGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAMEEISRASGSVGLSYGAHSNL 122 (274)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~~l~vPe~~GG~g~~~~~~~~v~e~lg~~~~~~~~~~~~~~~~ 122 (274)
+++++ +.+.+.+.+.|+.+.+|. +.|+.|++.||+++.+|++|||.|+++.+++.++|++++.++++++.+..|. .
T Consensus 3 ~~~~~-~~~~~~a~~~d~~~~~p~--~~~~~l~~~G~~~l~vP~~~GG~g~~~~~~~~~~e~la~~~~s~~~~~~~~~-~ 78 (377)
T cd01163 3 ARPLA-ARIAEGAAERDRQRGLPY--EEVALLRQSGLGTLRVPKEYGGLGASLPDLYEVVRELAAADSNIAQALRAHF-G 78 (377)
T ss_pred HHHHH-HHHhhhhhhhhhcCCCCH--HHHHHHHHCCCccccCchhhCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHH-H
Confidence 45553 456777778888999999 9999999999999999999999999999999999999999999988777765 4
Q ss_pred HHHHHHhcCCHHHHHHHhHHHhcCCceEEEEeeCCCCCCCCCCceEEEEEeCCeEEEeeEeecccCCCCCCEEEEEEEeC
Q 023999 123 CINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTD 202 (274)
Q Consensus 123 ~~~~l~~~g~~~q~~~~l~~~~~G~~~~~~a~te~~~g~d~~~~~~~a~~~~~g~~l~G~k~~vs~~~~a~~~lv~a~~~ 202 (274)
....+..+++++|+++|++++++|+++ +.+++||++++ .....+++.+++|||+|||+|.|+|++..||+++|.++.+
T Consensus 79 ~~~~l~~~g~~~~~~~~l~~~~~g~~~-~~a~tE~~~~~-~~~~~~~~~~~~~g~~lnG~K~~is~a~~Ad~~~v~a~~~ 156 (377)
T cd01163 79 FVEALLLAGPEQFRKRWFGRVLNGWIF-GNAVSERGSVR-PGTFLTATVRDGGGYVLNGKKFYSTGALFSDWVTVSALDE 156 (377)
T ss_pred HHHHHHhcCcHHHHHHHHHHHhCCCeE-EEeecCCCCCC-CCCceEEEEecCCEEEEeceEEeecCCccceEEEEEEEcC
Confidence 456788899999999999999999966 56999998765 5566677778889999999999999999999999999864
Q ss_pred CCCCCCCeEEEEEeCCCCCeEEeccCcccCCCCCceeeEEeceeeeCCCCcccCCCcccc
Q 023999 203 IKAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGCN 262 (274)
Q Consensus 203 ~~~~~~~~~~~lv~~~~~gv~~~~~~~~~Gl~~~~~~~v~f~~v~Vp~~~llg~~g~g~~ 262 (274)
+ .+..+|+||++.|||++.+.|+++|++++++++|+|+||+||+++++|.++.|+.
T Consensus 157 ~----~~~~~~lV~~~~~Gv~i~~~~~~~G~~~~~s~~v~f~~v~Vp~~~~lg~~~~g~~ 212 (377)
T cd01163 157 E----GKLVFAAVPTDRPGITVVDDWDGFGQRLTASGTVTFDNVRVEPDEVLPRPNAPDR 212 (377)
T ss_pred C----CcEEEEEEeCCCCceeecCCcccccCccCCcceEEEeeEEECHHHccCCCccccc
Confidence 3 2567899999999999988899999999999999999999999999999888765
No 25
>COG1960 CaiA Acyl-CoA dehydrogenases [Lipid metabolism]
Probab=100.00 E-value=4e-35 Score=268.05 Aligned_cols=235 Identities=41% Similarity=0.727 Sum_probs=202.7
Q ss_pred CCCHHHHHHHHHHHHHHHHhhcCcchhchhc---cCCCCCcHHHHHHHHhcCCcCCCCCccCCCCCCCHHHHHHHHHHHH
Q 023999 30 LLFDDTQLQFKESVGQFARENIAPRAANIDQ---SNSFPQDVNLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAMEEIS 106 (274)
Q Consensus 30 ~~s~~~~~~l~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~G~~~l~vPe~~GG~g~~~~~~~~v~e~lg 106 (274)
.+++++. ++.+.+++|+.+.+.+...+.+. .+.+|. ++|+.+.+.|++++.+|+++||.|.+..+...+.|+++
T Consensus 4 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~--~~~~~l~~~G~~~~~~p~e~GG~~~~~~~~~~~~e~l~ 80 (393)
T COG1960 4 DLSEEQE-ALRAEVREFAEEELAPEAAEIDRRIEDERFPR--ELLRALAEAGLLGLTIPEEYGGLGLSPLEQAAVLEELA 80 (393)
T ss_pred cCCHHHH-HHHHHHHHHHHHhcCcchhhhhhhcccccCHH--HHHHHHHhCCcccCCCChhhCCCCcchhHHHHHHHHHH
Confidence 3456777 99999999999998877666664 577786 99999999999999999999999999999999999999
Q ss_pred hhcCcchhhhhhhhH---HHHHHHHhcCCHHHHHHHhHHHhcCCceEEEEeeCCCCCCCCCCce-EEEEEeCCeEEEeeE
Q 023999 107 RASGSVGLSYGAHSN---LCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMK-CKADRVDGGYIINGN 182 (274)
Q Consensus 107 ~~~~~~~~~~~~~~~---~~~~~l~~~g~~~q~~~~l~~~~~G~~~~~~a~te~~~g~d~~~~~-~~a~~~~~g~~l~G~ 182 (274)
+.+.+.++....+.. .....+..+|+++|+++|+++++.|+++.|+++|||.+|+|+.... |++++.+|+|+|||+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~q~~~~l~~~~~G~~~~~~~~tEp~~Gsd~~~~~~t~a~~~~g~~~lnG~ 160 (393)
T COG1960 81 RADAGGALALGLTHGGLGALAPTILRFGTEEQKRRYLPRLASGELIGAFALTEPGAGSDLASLRTTAAVRDDGDYVLNGQ 160 (393)
T ss_pred hhCcchhhhHHHhccccccchHHHHHcCCHHHHHHhchhhhCCchhheeeccCCCCCcchhcCceeEEEecCCCEEEEeE
Confidence 999877654443321 1223566799999999999999999999999999999999999887 667776667999999
Q ss_pred eecccCCCCCCEEEEEEEeCCC-CCCCCeEEEEEeCC-CCCeEEeccCcccCCCCCceeeEEeceeeeCCCCcccCCCcc
Q 023999 183 KMWCTNGPVAQTLVVYAKTDIK-AGSKGITAFIIEKG-MPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKG 260 (274)
Q Consensus 183 k~~vs~~~~a~~~lv~a~~~~~-~~~~~~~~~lv~~~-~~gv~~~~~~~~~Gl~~~~~~~v~f~~v~Vp~~~llg~~g~g 260 (274)
|.|+|++..||+++|+|+++++ ++.+++++|+||++ .||+++.+.|+..|+++++++++.|+||+||.+++||.++.|
T Consensus 161 K~~is~~~~ad~~~v~Ar~~~~~~~~~gis~flV~~~~~~Gv~~~~~~~~~G~r~~~~~~v~f~~v~vp~~~lig~~~~g 240 (393)
T COG1960 161 KIWISNAPVADWLLVLARTDPAPGKHKGISLFLVPKDLTPGVSVGPILKKMGLRGSATGEVFFDDVRVPAENLLGEEGDG 240 (393)
T ss_pred EEEEcCCCCCCEEEEEEEcCCcccccCceEEEEEeCCCCCCeeeccccCcCCcCCCCeeEEEECCeeccHHHcCCcCCch
Confidence 9999999999999999998765 45668999999999 599999776554499999999999999999999999999999
Q ss_pred cccccCC
Q 023999 261 CNSFGEP 267 (274)
Q Consensus 261 ~~~~~~~ 267 (274)
+.++...
T Consensus 241 ~~~~~~~ 247 (393)
T COG1960 241 FKIAMET 247 (393)
T ss_pred HHHHHHh
Confidence 8877655
No 26
>PLN02876 acyl-CoA dehydrogenase
Probab=100.00 E-value=1.5e-34 Score=285.46 Aligned_cols=235 Identities=26% Similarity=0.411 Sum_probs=195.6
Q ss_pred CCCCHHHHHHHHHHHHHHHHhhcCcchhchhccC-------CCC-CcHHHHHHHH-hcCCcCCCCCcc------------
Q 023999 29 SLLFDDTQLQFKESVGQFARENIAPRAANIDQSN-------SFP-QDVNLWKLMG-NFNLHGITAPQE------------ 87 (274)
Q Consensus 29 ~~~s~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-------~~~-~~~~~~~~l~-~~G~~~l~vPe~------------ 87 (274)
+.+|+++. ++++++++|+.+.+.|...+.++.. .+| . +.|+.+. ++||+++.+|++
T Consensus 400 ~~~s~~~~-~l~~~~~~f~~~~~~p~~~~~~~~~~~~~~~~~~p~~--~~~~~~~~~~G~~~~~~p~~~~~~~~~~~~~~ 476 (822)
T PLN02876 400 FVPSEKVL-ELRKKLIKFMEDHIYPMENEFYKLAQSSSRWTVHPEE--ERLKELAKKEGLWNLWIPLDSAARARKLLFED 476 (822)
T ss_pred cCCCHHHH-HHHHHHHHHHHHHccCccHHHHhhcccccccccCcch--HHHHHHHHHcCcccCCCCchhhhhhhhccccc
Confidence 45788988 9999999999999887664444221 255 4 7788875 999999999995
Q ss_pred ------------CCCCCCCHHHHHHHHHHHHhhcCcch-hhhhhhhHHHHHHHHhcCCHHHHHHHhHHHhcCCceEEEEe
Q 023999 88 ------------YGGLGLGYLYHCIAMEEISRASGSVG-LSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAM 154 (274)
Q Consensus 88 ------------~GG~g~~~~~~~~v~e~lg~~~~~~~-~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~G~~~~~~a~ 154 (274)
+||.|+++.+.+.++|++|+++.+.. +....+...+...|..+|+++||++|++++++|++++++++
T Consensus 477 ~~~~~~~~~~~~~GG~G~~~~~~~~~~Eelg~~~~~~~~~~~~~~~~~~~~~l~~~gt~eqk~~~L~~l~~G~~~~~~a~ 556 (822)
T PLN02876 477 NKHMVSGDSADQLLGAGLSNLEYGYLCEIMGRSVWAPQVFNCGAPDTGNMEVLLRYGNKEQQLEWLIPLLEGKIRSGFAM 556 (822)
T ss_pred ccccccccccccCCCCCCCHHHHHHHHHHHhccchHHHHhcccCcccccHHHHHHhCCHHHHHHHHHHHhCCCceeEEEe
Confidence 99999999999999999999865422 21222221334578889999999999999999999999999
Q ss_pred eCCC-CCCCCCCceEEEEEeCCeEEEeeEeecccCC--CCCCEEEEEEEeCCCC-CCCCeEEEEEeCCCCCeEEeccCcc
Q 023999 155 SEPN-AGSDVVGMKCKADRVDGGYIINGNKMWCTNG--PVAQTLVVYAKTDIKA-GSKGITAFIIEKGMPGFSTAQKLDK 230 (274)
Q Consensus 155 te~~-~g~d~~~~~~~a~~~~~g~~l~G~k~~vs~~--~~a~~~lv~a~~~~~~-~~~~~~~~lv~~~~~gv~~~~~~~~ 230 (274)
|||+ +|+|..+++|++++++|||+|||+|.|++++ ..||+++|+++.+++. +.+++++|+||.+.|||++.++|++
T Consensus 557 tEp~~~gsd~~~~~t~a~~~g~g~vLnG~K~~vtga~~~~ad~~lv~ar~~~~~~~~~~~s~flV~~~~pGv~i~~~~~~ 636 (822)
T PLN02876 557 TEPQVASSDATNIECSIRRQGDSYVINGTKWWTSGAMDPRCRVLIVMGKTDFNAPKHKQQSMILVDIQTPGVQIKRPLLV 636 (822)
T ss_pred cCCCccCcccccceEEEEEcCCEEEEEeEEEEecCCCCCCCCEEEEEEecCCCCCCCCcceEEEEeCCCCCceeecccce
Confidence 9997 7799999999999999999999999999998 5799999999875432 2346789999999999999889999
Q ss_pred cCCCCC--ceeeEEeceeeeCCCCcccCCCcccccccC
Q 023999 231 LGMRGS--DTCELVFENCFVPNENVLGQEGKGCNSFGE 266 (274)
Q Consensus 231 ~Gl~~~--~~~~v~f~~v~Vp~~~llg~~g~g~~~~~~ 266 (274)
+|++++ ++++|.|+||+||+++++|.+++|+++++.
T Consensus 637 ~G~r~~~~~~~~v~fd~V~Vp~~~~lg~~g~g~~~~~~ 674 (822)
T PLN02876 637 FGFDDAPHGHAEISFENVRVPAKNILLGEGRGFEIAQG 674 (822)
T ss_pred eccCCCCCCeeEEEEcceeechhheecCCCchHHHHHH
Confidence 999974 588999999999999999988888876543
No 27
>KOG0137 consensus Very-long-chain acyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=100.00 E-value=2.3e-35 Score=266.81 Aligned_cols=257 Identities=29% Similarity=0.511 Sum_probs=219.9
Q ss_pred hhhhhhhhhhhccccccccCCCCCCCHHHHHHHHHHHHHHHHhhcCcc--hhchhccCCCCCcHHHHHHHHhcCCcCCCC
Q 023999 7 ARSLCASFFTKKQKHSAAFSSTSLLFDDTQLQFKESVGQFARENIAPR--AANIDQSNSFPQDVNLWKLMGNFNLHGITA 84 (274)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~G~~~l~v 84 (274)
++|+..+.|+-+...-.-|+=+.-+++|+. ++.+.+-.-+.+.+.+. .+..|+.+..++ ..|+.|+++|+|++.|
T Consensus 52 ~rs~~~~lF~~~~v~k~v~~yPev~~~e~~-~~~~~~~~pl~r~f~e~~d~~k~d~~~~~~~--~t~e~l~elG~fgl~v 128 (634)
T KOG0137|consen 52 SRSFARGLFRGKLVTKDVFPYPEVITSEQK-ELLEQFVLPLERFFEEVNDSKKNDKLGKIEE--TTLEALRELGLFGLQV 128 (634)
T ss_pred chhHHHHhhhhhhhhhhhcCCcccCcHHHH-HHHHhhhhhHHHhhhccchhhhhhhhcccch--hHHHHHHHhCceeecc
Confidence 456666656555555555555677788877 66544444434433322 356777777888 9999999999999999
Q ss_pred CccCCCCCCCHHHHHHHHHHHHhhcCcchhhhhhhhHHHHHHHHhcCCHHHHHHHhHHHhcCCceEEEEeeCCCCCCCCC
Q 023999 85 PQEYGGLGLGYLYHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVV 164 (274)
Q Consensus 85 Pe~~GG~g~~~~~~~~v~e~lg~~~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~G~~~~~~a~te~~~g~d~~ 164 (274)
|.+++|.|+++.+++.+.|.++.++.++.+.+..|...+...|..||+++||++|||.+++|+.+++++++||..|||..
T Consensus 129 ~~e~~G~G~~ntq~arl~e~~~~~D~~v~~tl~ahq~i~~k~l~lyGt~~Qk~kYL~~LaSg~~~~A~altE~s~Gsdaa 208 (634)
T KOG0137|consen 129 PSEFDGLGFCNTQYARLFEIVSVADLNVGVTLGAHQSIGLKGLLLYGTDEQKQKYLPKLASGKLIAAFALTEPSSGSDAA 208 (634)
T ss_pred CcccCccccchHHHHHHhhccccccccceeeeccchhhheeeeeecCCHHHHHHHHHhhhcCCccceEEEecCCCCcccc
Confidence 99999999999999999999999999998888888877788899999999999999999999999999999999999999
Q ss_pred CceEEEEEeCC--eEEEeeEeecccCCCCCCEEEEEEEeCCC----CCCCCeEEEEEeCCCCCeEEeccCcccCCCCCce
Q 023999 165 GMKCKADRVDG--GYIINGNKMWCTNGPVAQTLVVYAKTDIK----AGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDT 238 (274)
Q Consensus 165 ~~~~~a~~~~~--g~~l~G~k~~vs~~~~a~~~lv~a~~~~~----~~~~~~~~~lv~~~~~gv~~~~~~~~~Gl~~~~~ 238 (274)
...++++...| .|+|||.|.|++|+..||.++|+|++.-+ ..+++.++|+|+++..|++..++..++|.+++.+
T Consensus 209 s~~~~a~~s~dg~~y~LNG~Kiwisn~g~Adif~VfAqt~~~~~~g~~k~k~T~Flver~~~Gvt~G~~e~k~GiKgsnt 288 (634)
T KOG0137|consen 209 SGRTTATLSPDGKHYVLNGSKIWISNGGLADIFTVFAQTEVDPADGEVKRKITAFLVERDFGGVTNGPPEKKMGIKGSNT 288 (634)
T ss_pred cceeeeeecCCCCeEEEcCeeEEEecCccceeeeeeeccccCCCCccccCceEEEEEeccccCccCCCchhhhcccccce
Confidence 99999987554 49999999999999999999999998622 2356799999999999999999999999999999
Q ss_pred eeEEeceeeeCCCCcccCCCcccccccC
Q 023999 239 CELVFENCFVPNENVLGQEGKGCNSFGE 266 (274)
Q Consensus 239 ~~v~f~~v~Vp~~~llg~~g~g~~~~~~ 266 (274)
.+|+|+++.||.+++||.+|+|++++++
T Consensus 289 ~~v~f~~~ki~~envlG~~G~G~kva~n 316 (634)
T KOG0137|consen 289 AEVHFEGVKIPIENVLGKPGDGFKVAMN 316 (634)
T ss_pred eeeeeccccccHHHhcCCCCcchHHHHH
Confidence 9999999999999999999999998765
No 28
>PTZ00456 acyl-CoA dehydrogenase; Provisional
Probab=100.00 E-value=2.8e-34 Score=273.64 Aligned_cols=233 Identities=26% Similarity=0.435 Sum_probs=193.9
Q ss_pred CCCHHHHHHHHHHHHHHHHhhcCcchhchhccCCC---------CC-cHHHHHHHHhcCCcCCCCCccCCCCCCCHHHHH
Q 023999 30 LLFDDTQLQFKESVGQFARENIAPRAANIDQSNSF---------PQ-DVNLWKLMGNFNLHGITAPQEYGGLGLGYLYHC 99 (274)
Q Consensus 30 ~~s~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~---------~~-~~~~~~~l~~~G~~~l~vPe~~GG~g~~~~~~~ 99 (274)
+++++..+++++.+++|+.+.+.|...+.|+++.+ |+ +.++|+.+.+.||+++.+|+++||.|++.....
T Consensus 54 ~~~~~~~~~il~~a~~fa~~~~~p~~~~~D~~~~~~~~~g~v~~p~g~~e~~~~l~e~G~~~l~~Pee~GG~Gl~~~~~~ 133 (622)
T PTZ00456 54 DVTKELMDSLLEEASKLATQTLLPLYESSDSEGCVLLKDGNVTTPKGFKEAYQALKAGGWTGISEPEEYGGQALPLSVGF 133 (622)
T ss_pred cCCHHHHHHHHHHHHHHHHHhcccchhhHhhccCccccCCcccCChhHHHHHHHHHHcCCCCCCCCcccCCCCcCHHHHH
Confidence 46777777999999999999999988777766533 42 248999999999999999999999999987555
Q ss_pred HHHHHHHhhcCcchhhhhhhhHHHHHHHHhcCCHHHHHHHhHHHhcCCceEEEEeeCCCCCCCCCCceEEEEEeCCe-EE
Q 023999 100 IAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGG-YI 178 (274)
Q Consensus 100 ~v~e~lg~~~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~G~~~~~~a~te~~~g~d~~~~~~~a~~~~~g-~~ 178 (274)
.+.|.+++.++++++....+. .+...|..+|+++||++||+++++|++.+++++|||++|||+..+.|+|++++|| |+
T Consensus 134 ~~~E~~~~a~~~~~~~~~l~~-ga~~~L~~~Gs~eqk~~~Lp~l~sGe~~~t~alTEp~aGSD~~~l~T~A~~~gdG~y~ 212 (622)
T PTZ00456 134 ITRELMATANWGFSMYPGLSI-GAANTLMAWGSEEQKEQYLTKLVSGEWSGTMCLTEPQCGTDLGQVKTKAEPSADGSYK 212 (622)
T ss_pred HHHHHHHHhchHHHHHHHHHH-HHHHHHHHhCCHHHHHHHHHHHhcCChhhhhhccCCccCCCcccCeeEEEECCCCcEE
Confidence 556667777776543333322 4456888999999999999999999999999999999999999999999999875 99
Q ss_pred EeeEeecccCCCCC----CEEEEEEEeCCC-CCCCCeEEEEEeCCC----------CCeEEeccCcccCCCCCceeeEEe
Q 023999 179 INGNKMWCTNGPVA----QTLVVYAKTDIK-AGSKGITAFIIEKGM----------PGFSTAQKLDKLGMRGSDTCELVF 243 (274)
Q Consensus 179 l~G~k~~vs~~~~a----~~~lv~a~~~~~-~~~~~~~~~lv~~~~----------~gv~~~~~~~~~Gl~~~~~~~v~f 243 (274)
|||+|.|||++.++ ++++|+|+.+++ ++.+++++|+||++. +||++.+..+++|+++++++.+.|
T Consensus 213 L~G~K~fIt~g~~~~~~n~~~lVlAr~~~~~~g~~GiSlFlVp~~~~~~~G~~~~~~gv~~~~~~~kmG~~gs~t~~l~f 292 (622)
T PTZ00456 213 ITGTKIFISAGDHDLTENIVHIVLARLPNSLPTTKGLSLFLVPRHVVKPDGSLETAKNVKCIGLEKKMGIKGSSTCQLSF 292 (622)
T ss_pred EeeEEEEecCCchhhccCcEEEEEEEecCCCCCCCceEEEEEeCCCCCcCCCccCCCCeeecCcccccCCCCCceEEEEe
Confidence 99999999998763 678999998653 456789999999865 468877778999999999999999
Q ss_pred ceeeeCCCCcccCCCcccccccC
Q 023999 244 ENCFVPNENVLGQEGKGCNSFGE 266 (274)
Q Consensus 244 ~~v~Vp~~~llg~~g~g~~~~~~ 266 (274)
+|+ .+++||.+++|++++..
T Consensus 293 d~~---~~~llG~~~~Gl~~~~~ 312 (622)
T PTZ00456 293 ENS---VGYLIGEPNAGMKQMFT 312 (622)
T ss_pred eCh---hHhhcCCCChHHHHHHH
Confidence 994 58999999999876543
No 29
>KOG0138 consensus Glutaryl-CoA dehydrogenase [Amino acid transport and metabolism]
Probab=100.00 E-value=2.7e-33 Score=235.44 Aligned_cols=229 Identities=31% Similarity=0.567 Sum_probs=209.3
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhhcCcchhchhccCCCCCcHHHHHHHHhcCCcCCCCCccCCCCCCCHHHHHHHHHHHHh
Q 023999 28 TSLLFDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAMEEISR 107 (274)
Q Consensus 28 ~~~~s~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~~l~vPe~~GG~g~~~~~~~~v~e~lg~ 107 (274)
.+.+++|++ .+++.+|+++++++.|...++.++..|+. ++..++..+|++|..+ +.||=.|.+.+....+.+++.|
T Consensus 52 ~dqLT~dE~-air~~~Reycq~~l~Prvtea~r~e~F~~--~i~pemGsmGvlG~ti-kGYGCaG~S~vaygl~~rEveR 127 (432)
T KOG0138|consen 52 EDQLTEDEI-AIRDTFREYCQERLMPRVTEANRNEVFDR--EIIPEMGSMGVLGPTI-KGYGCAGVSSVAYGLLAREVER 127 (432)
T ss_pred hhhcCHHHH-HHHHHHHHHHHHHhhhHHHHHhhhccCCh--hhhhhhhccccccCcc-cCcCCCchHHHHHHHHHHHHHH
Confidence 367899999 99999999999999999999999999999 9999999999998876 4688889999999999999999
Q ss_pred hcCcchhhhhhhhHHHHHHHHhcCCHHHHHHHhHHHhcCCceEEEEeeCCCCCCCCCCceEEEEEeCCe--EEEeeEeec
Q 023999 108 ASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGG--YIINGNKMW 185 (274)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~G~~~~~~a~te~~~g~d~~~~~~~a~~~~~g--~~l~G~k~~ 185 (274)
.+.+....+..|+.++...|..+|+++||++|+|.+++|+.++||++|||.+|||+.++.|+|+.++.+ |.|||.|.|
T Consensus 128 VDs~yrs~~sVqsSL~m~~Iy~~GSE~QkqkYlPslA~g~~igcfgLTEPn~GSdpsgmeT~At~~e~~ktyklNGsKtW 207 (432)
T KOG0138|consen 128 VDSGYRSAMSVQSSLVMGPIYAYGSEEQKQKYLPSLAKGKLIGCFGLTEPNHGSDPSGMETRATYDESNKTYKLNGSKTW 207 (432)
T ss_pred hhhhchhhhhhhhhhhhhhHhhcCCHHHHhhhhhhhhcCceeeEEeccCCCCCCCcccccceeEEccCCceEEECCeeee
Confidence 998877777778879999999999999999999999999999999999999999999999999998887 999999999
Q ss_pred ccCCCCCCEEEEEEEeCCCCCCCCeEEEEEeCCCCCeEEeccCcccCCCCCceeeEEeceeeeCCCCcccCCCccccccc
Q 023999 186 CTNGPVAQTLVVYAKTDIKAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGCNSFG 265 (274)
Q Consensus 186 vs~~~~a~~~lv~a~~~~~~~~~~~~~~lv~~~~~gv~~~~~~~~~Gl~~~~~~~v~f~~v~Vp~~~llg~~g~g~~~~~ 265 (274)
++|++.||.++|.||...+ ..+.=|+|+++.+|.+......++++|.+.++.+-.+||+||+++++ +|..-++
T Consensus 208 I~nsp~aDl~vvwAr~~t~---n~I~GFi~~k~~~GL~apkI~gK~sLRas~tG~Ilmd~V~VPeE~~L----Pg~~s~q 280 (432)
T KOG0138|consen 208 ITNSPMADLFVVWARCETD---NKIRGFILEKGMRGLSAPKIEGKFSLRASATGMILMDGVEVPEENLL----PGASSLQ 280 (432)
T ss_pred ecCCcccceEEEEEecccC---CceeeEEEecCCCCCcCCCcCCeeeeeecccCceeecCCcCChhhcC----CCccccC
Confidence 9999999999999998642 35667999999999998777899999999999999999999999999 4455555
Q ss_pred CC
Q 023999 266 EP 267 (274)
Q Consensus 266 ~~ 267 (274)
.|
T Consensus 281 gp 282 (432)
T KOG0138|consen 281 GP 282 (432)
T ss_pred Cc
Confidence 55
No 30
>PLN02636 acyl-coenzyme A oxidase
Probab=100.00 E-value=7.9e-32 Score=259.12 Aligned_cols=218 Identities=22% Similarity=0.364 Sum_probs=189.4
Q ss_pred CCHHHHHHHHHHHHHHHHhhc---CcchhchhccCCCC-CcHHHHHHHHhcCCcCCCCCccCCCCCCCHHHHHHHHHHHH
Q 023999 31 LFDDTQLQFKESVGQFARENI---APRAANIDQSNSFP-QDVNLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAMEEIS 106 (274)
Q Consensus 31 ~s~~~~~~l~~~~~~~~~~~~---~~~~~~~~~~~~~~-~~~~~~~~l~~~G~~~l~vPe~~GG~g~~~~~~~~v~e~lg 106 (274)
+++++. ++++++++|+.+.. .+.....++.+.++ . ++++.+.+.|++++.+|++ ++.++..+.|+++
T Consensus 61 l~~~~~-~~r~~v~~~~~~~~~~~~~~~~~~~~~~e~~~~--~l~~~~~~~g~~~~~~~~~------~~~~~~~~~e~l~ 131 (686)
T PLN02636 61 MRGKHR-DIQEKIYEFFNSRPDLQTPVEISKDEHRELCMR--QLTGLVREAGIRPMKYLVE------DPAKYFAITEAVG 131 (686)
T ss_pred cCCcHH-HHHHHHHHHHHhCccccCCchhhHHHhhhhHHH--HHHHHHHhcCccccccccC------CHHHHHHHHHHHH
Confidence 456677 89999999988763 45455556666666 6 8999999999999999986 8899999999999
Q ss_pred hhcCcchhhhhhhhHHHHHHHHhcCCHHHHHHHhHHHhcCCceEEEEeeCCCCCCCCCCceEEEEEe--CCeEEEe----
Q 023999 107 RASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRV--DGGYIIN---- 180 (274)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~G~~~~~~a~te~~~g~d~~~~~~~a~~~--~~g~~l~---- 180 (274)
+.+++++..+..|..+....|..+|+++|+++||+++.+|++++|+|+|||++|||+.+++|+|+++ +|+|+||
T Consensus 132 ~~d~s~~~~~~vh~~l~~~~I~~~GTeeQk~~~L~~~~~ge~ig~fA~TEpghGSdv~~leTtA~~d~~~defVLntP~~ 211 (686)
T PLN02636 132 SVDMSLGIKLGVQYSLWGGSVINLGTKKHRDKYFDGIDNLDYPGCFAMTELHHGSNVQGLQTTATFDPLTDEFVINTPND 211 (686)
T ss_pred hhchhhHHHHHhhhhhHHHHHHHhCCHHHHHHHHHHHhCCChhhhhhccCCCcccCcccCeeEEEEcCCCCeEEECCCCC
Confidence 9998877666777656777889999999999999999999999999999999999999999999998 7889999
Q ss_pred -eEeecccCCCC-CCEEEEEEEeCCC------CCCCCeEEEEEeCC-------CCCeEEeccCcccCCCCCceeeEEece
Q 023999 181 -GNKMWCTNGPV-AQTLVVYAKTDIK------AGSKGITAFIIEKG-------MPGFSTAQKLDKLGMRGSDTCELVFEN 245 (274)
Q Consensus 181 -G~k~~vs~~~~-a~~~lv~a~~~~~------~~~~~~~~~lv~~~-------~~gv~~~~~~~~~Gl~~~~~~~v~f~~ 245 (274)
|+|+|++|+.. ||+++|+|++..+ +++.++++|+||.+ .|||++.+..+++|+++.+++.+.|+|
T Consensus 212 ~g~K~wI~na~~~ad~~vV~Arl~~~~~~~~~~~~~Gi~~FlVp~r~~~~~~~~PGV~v~~~~~K~G~~g~dng~l~Fdn 291 (686)
T PLN02636 212 GAIKWWIGNAAVHGKFATVFARLKLPTHDSKGVSDMGVHAFIVPIRDMKTHQVLPGVEIRDCGHKVGLNGVDNGALRFRS 291 (686)
T ss_pred CeEEEeecCCcccCCEEEEEEEecCCCCCccCCCCCCeeEEEEecCccccCCCCCCeEeccCCCccCCCCCcceEEEEee
Confidence 99999999965 9999999997521 12468999999987 499999888999999999999999999
Q ss_pred eeeCCCCcccCC
Q 023999 246 CFVPNENVLGQE 257 (274)
Q Consensus 246 v~Vp~~~llg~~ 257 (274)
|+||.+++||..
T Consensus 292 VrVP~~nlLg~~ 303 (686)
T PLN02636 292 VRIPRDNLLNRF 303 (686)
T ss_pred EEECHHHhcccc
Confidence 999999999654
No 31
>cd01154 AidB Proteins involved in DNA damage response, similar to the AidB gene product. AidB is one of several genes involved in the SOS adaptive response to DNA alkylation damage, whose expression is activated by the Ada protein. Its function has not been entirely elucidated; however, it is similar in sequence and function to acyl-CoA dehydrogenases. It has been proposed that aidB directly destroys DNA alkylating agents such as nitrosoguanidines (nitrosated amides) or their reaction intermediates.
Probab=99.97 E-value=3.3e-30 Score=237.23 Aligned_cols=214 Identities=25% Similarity=0.342 Sum_probs=176.0
Q ss_pred HHHHHHhhcCcchhchhccCC------CCC-cHHHHHHHHhcCCcCCCCCccCCCCCCCHHHHHHHHHHHHhhcCcchhh
Q 023999 43 VGQFARENIAPRAANIDQSNS------FPQ-DVNLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAMEEISRASGSVGLS 115 (274)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~~~~------~~~-~~~~~~~l~~~G~~~l~vPe~~GG~g~~~~~~~~v~e~lg~~~~~~~~~ 115 (274)
..+++..+ .|.....|..+. +|+ +.++++.+.+.||+++ +|+++||.| ......+.+.++..+.....+
T Consensus 37 ~~~~a~~~-~P~~~~~d~~g~r~~~v~~~~~~~~~~~~~~~~G~~~~-~~~~~~~~g--~~~~~~~~~~~~~~~~~~~~p 112 (418)
T cd01154 37 LARLADRN-PPVLEMWDRWGRRVDRVWVHPAWHALMRRLIEEGVINI-EDGPAGEGR--RHVHFAAGYLLSDAAAGLLCP 112 (418)
T ss_pred HHHHhhcC-CCcccCCCCCCCcCCeEEeCHHHHHHHHHHHHcCCccC-CchhhCCCc--HHHHHHHHHHHHhcchhccCc
Confidence 34444444 677777777776 562 2488999999999999 787887755 334445677777777666665
Q ss_pred hhhhhHHHHHHHHhcCCHHHHHHHhHHHhcCC----ceEEEEeeCCCCCCCCCCceEEEEEe-CCeEEEeeEeecccCCC
Q 023999 116 YGAHSNLCINQLVRHGSPAQKDKYLPKLISGE----HVGALAMSEPNAGSDVVGMKCKADRV-DGGYIINGNKMWCTNGP 190 (274)
Q Consensus 116 ~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~G~----~~~~~a~te~~~g~d~~~~~~~a~~~-~~g~~l~G~k~~vs~~~ 190 (274)
+.++. .+...|..+|+++| ++|++++++|+ +++++++|||++|||+..++|+|+++ +|+|+|||+|.|+|++
T Consensus 113 ~~~~~-~~~~~l~~~g~~~~-~~~l~~l~~g~~~~~~~~~~~~TEp~~GSD~~~~~T~A~~~~g~~~~LnG~K~f~s~a- 189 (418)
T cd01154 113 LTMTD-AAVYALRKYGPEEL-KQYLPGLLSDRYKTGLLGGTWMTEKQGGSDLGANETTAERSGGGVYRLNGHKWFASAP- 189 (418)
T ss_pred HHHHH-HHHHHHHHhCcHHH-HHHHHHHhCCCcccchhheeeecCCCcccchhhCeEEEEECCCCcEEEEEEEEEecCc-
Confidence 55555 57778889998886 47999999997 89999999999999999999999999 8899999999999999
Q ss_pred CCCEEEEEEEeCCC-CCCCCeEEEEEeCCCC-----CeEEeccCcccCCCCCceeeEEeceeeeCCCCcccCCCcccccc
Q 023999 191 VAQTLVVYAKTDIK-AGSKGITAFIIEKGMP-----GFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGCNSF 264 (274)
Q Consensus 191 ~a~~~lv~a~~~~~-~~~~~~~~~lv~~~~~-----gv~~~~~~~~~Gl~~~~~~~v~f~~v~Vp~~~llg~~g~g~~~~ 264 (274)
.||+++|+|+.+++ ++.+++++|+||++.| ||++.+.|+++|++++++++|.|+||. +++||.+++|+.++
T Consensus 190 ~Ad~~lv~Art~~~~~~~~gls~flVp~~~~~~~~~Gv~i~~~~~~~G~r~~~~~ev~f~dv~---~~~lG~~g~G~~~~ 266 (418)
T cd01154 190 LADAALVLARPEGAPAGARGLSLFLVPRLLEDGTRNGYRIRRLKDKLGTRSVATGEVEFDDAE---AYLIGDEGKGIYYI 266 (418)
T ss_pred ccCEEEEEEECCCCCCCCCcEEEEEEeccCCCCCCCCeEecccccccCCCCCCeEEEEecCcC---ccccCCCCccHHHH
Confidence 99999999998653 3456899999999875 999999999999999999999999984 88999999998876
Q ss_pred cC
Q 023999 265 GE 266 (274)
Q Consensus 265 ~~ 266 (274)
++
T Consensus 267 ~~ 268 (418)
T cd01154 267 LE 268 (418)
T ss_pred HH
Confidence 54
No 32
>PTZ00457 acyl-CoA dehydrogenase; Provisional
Probab=99.97 E-value=4.2e-30 Score=238.98 Aligned_cols=179 Identities=34% Similarity=0.424 Sum_probs=153.6
Q ss_pred HHHhc-CCcCCCCCccCCCCCCCHHHHHHHHHHHHhhcCcchhhhhhhhHHHHHHHHhcCCHHHHHHHhHHHhcCCceEE
Q 023999 73 LMGNF-NLHGITAPQEYGGLGLGYLYHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGA 151 (274)
Q Consensus 73 ~l~~~-G~~~l~vPe~~GG~g~~~~~~~~v~e~lg~~~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~G~~~~~ 151 (274)
.++++ ||+++.+|++|||.|+++.+++.++|++|+++.+.++.+..|...+...+..+|+++||++|||++++|+.+++
T Consensus 58 ~~~~l~Gl~gl~vPeeyGG~Gl~~~~~a~v~Eelgr~~~s~~l~~~~h~~l~~~~L~~~Gt~eqker~Lp~lasGe~i~A 137 (520)
T PTZ00457 58 NDKILGNLYGARIATEYGGLGLGHTAHALIYEEVGTNCDSKLLSTIQHSGFCTYLLSTVGSKELKGKYLTAMSDGTIMMG 137 (520)
T ss_pred chHhcCCccCCCCChhhCCCCCCHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhCCCcEEE
Confidence 36799 99999999999999999999999999999988776554444543556678889999999999999999999999
Q ss_pred EEeeCCCCCCCCCCceEEEEEe-CCeEEEeeEeecccCCCCCCEEEEEEEeCC----CCC---CCCeEEEEEeCCCCCeE
Q 023999 152 LAMSEPNAGSDVVGMKCKADRV-DGGYIINGNKMWCTNGPVAQTLVVYAKTDI----KAG---SKGITAFIIEKGMPGFS 223 (274)
Q Consensus 152 ~a~te~~~g~d~~~~~~~a~~~-~~g~~l~G~k~~vs~~~~a~~~lv~a~~~~----~~~---~~~~~~~lv~~~~~gv~ 223 (274)
++++| ++|+|...+.|+++++ +|+|+|||+|.|+ ++..||+++|+|++++ +.+ .+++++|+||++.|||+
T Consensus 138 ~AltE-~aGSD~a~i~TtA~~~~gg~wvLNG~K~~t-~g~~Ad~~lV~Art~~~~~~~~g~~~~~git~FlV~~dapGVt 215 (520)
T PTZ00457 138 WATEE-GCGSDISMNTTKASLTDDGSYVLTGQKRCE-FAASATHFLVLAKTLTQTAAEEGATEVSRNSFFICAKDAKGVS 215 (520)
T ss_pred EEeCC-CCCCccccceeEEEEcCCCeEEEEEEEEEE-cCchhcEEEEEeecCCcccccccccCcCceEEEEEECCCCceE
Confidence 99988 8999999999999986 5579999999966 8999999999999743 112 24689999999999999
Q ss_pred EeccCcccCCCCCceeeEEeceeeeCCCCcccCCCcccccccCC
Q 023999 224 TAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGCNSFGEP 267 (274)
Q Consensus 224 ~~~~~~~~Gl~~~~~~~v~f~~v~Vp~~~llg~~g~g~~~~~~~ 267 (274)
+.. ++|.|+|| |++++||.+|+|++++++.
T Consensus 216 v~~------------~eV~FddV--P~~~vLG~~g~G~~~a~~~ 245 (520)
T PTZ00457 216 VNG------------DSVVFENT--PAADVVGVVGEGFKDAMIT 245 (520)
T ss_pred Eec------------CEEEECCC--CHHHhCCCCCchHHHHHHH
Confidence 842 59999997 9999999999999876653
No 33
>PLN02312 acyl-CoA oxidase
Probab=99.97 E-value=5.4e-30 Score=246.03 Aligned_cols=193 Identities=23% Similarity=0.323 Sum_probs=169.4
Q ss_pred hccCCCCCcHHHHHHHHhcCCcCCCCCccCCCCCCCHHHHHHHHHHHHhhcCcchhhhhhhhHHHHHHHHhcCCHHHHHH
Q 023999 59 DQSNSFPQDVNLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDK 138 (274)
Q Consensus 59 ~~~~~~~~~~~~~~~l~~~G~~~l~vPe~~GG~g~~~~~~~~v~e~lg~~~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~ 138 (274)
++....+. +.|+.+.+.|+.+..+|++ |.+ ++.+.+.++|++++.+++++..+..|..+....|..+|+++|+++
T Consensus 101 ~~~~~~~~--~~~~~l~~~g~~~~~~pe~--g~~-~~~~~~~~~Eel~~~d~s~~~~~~vh~~l~~~~I~~~GTeeqk~~ 175 (680)
T PLN02312 101 EQQREITM--KRILYLLERGVFRGWLTET--GPE-AELRKLALLEVIGIYDHSLAIKLGVHFFLWGGAIKFLGTKRHHDK 175 (680)
T ss_pred HHHHHhHH--HHHHHHHHhhhcCCCCCCC--CCc-cHHHHHHHHHHHHHhcchHHHHHHhhhhhHHHHHHHhCCHHHHHH
Confidence 44445566 8999999999999999995 333 688889999999999888766666676567778888999999999
Q ss_pred HhHHHhcCCceEEEEeeCCCCCCCCCCceEEEEEe--CCeEEEe-----eEeecccCC-CCCCEEEEEEEeCCCCCCCCe
Q 023999 139 YLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRV--DGGYIIN-----GNKMWCTNG-PVAQTLVVYAKTDIKAGSKGI 210 (274)
Q Consensus 139 ~l~~~~~G~~~~~~a~te~~~g~d~~~~~~~a~~~--~~g~~l~-----G~k~~vs~~-~~a~~~lv~a~~~~~~~~~~~ 210 (274)
|++++.+|++++|+++|||++|||+.+++|+|+++ +|+|+|| |+|+|++|+ ..|++++|+|++..+.++.++
T Consensus 176 ~L~~~~~ge~ig~fA~TEpghGSdv~~leTtAt~D~~~defVLNtPt~~g~K~wig~a~~~A~~~vV~Arl~~~~~~~Gv 255 (680)
T PLN02312 176 WLKDTEDYVVKGCFAMTELGHGSNVRGIETVTTYDPKTEEFVINTPCESAQKYWIGGAANHATHTIVFSQLHINGKNEGV 255 (680)
T ss_pred HHHHHhCCCeeeEeeecCCCcCcchhcCeEEEEEeCCCCEEEECCCCCCeEEECccCCcccCCEEEEEEEECCCCCCCCe
Confidence 99999999999999999999999999999999997 4679999 799999998 799999999998654456689
Q ss_pred EEEEEe---CC---CCCeEEeccCcccCCCCCceeeEEeceeeeCCCCcccC
Q 023999 211 TAFIIE---KG---MPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQ 256 (274)
Q Consensus 211 ~~~lv~---~~---~~gv~~~~~~~~~Gl~~~~~~~v~f~~v~Vp~~~llg~ 256 (274)
.+|+|| .+ .|||++.+..+++|+++.+++.|.|+||+||.+++||.
T Consensus 256 ~~FlV~ird~~~~~~PGV~ig~~~~K~G~~g~dng~l~FdnVrVP~~nlLg~ 307 (680)
T PLN02312 256 HAFIAQIRDQDGNICPNIRIADCGHKIGLNGVDNGRIWFDNLRIPRENLLNS 307 (680)
T ss_pred EEEEEeecCCCCCCCCCEEeccCCCcccccCCCceEEEEccEEECHHHhCCc
Confidence 999998 23 79999998899999999999999999999999999984
No 34
>KOG1469 consensus Predicted acyl-CoA dehydrogenase [General function prediction only]
Probab=99.97 E-value=1.3e-30 Score=216.26 Aligned_cols=200 Identities=27% Similarity=0.381 Sum_probs=172.9
Q ss_pred HHHHHHHHhcCCcCCCCCcc--CCCCCCCHHHHHHHHHHHHhhc-CcchhhhhhhhHHHHHHHHhcCCHHHHHHHhHHHh
Q 023999 68 VNLWKLMGNFNLHGITAPQE--YGGLGLGYLYHCIAMEEISRAS-GSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLI 144 (274)
Q Consensus 68 ~~~~~~l~~~G~~~l~vPe~--~GG~g~~~~~~~~v~e~lg~~~-~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~ 144 (274)
+++-+..+..|++.+++|.. ..|.|++.+|++.++|.+|+.. +|-.+.+.........+|.+||+++|+.+||-+++
T Consensus 30 ekLKE~aK~eGlWNLFlp~~~qkyg~GLtnveYa~icElmGrs~~APeVfNC~APDTGNMEvl~rYGseeQks~WL~PLL 109 (392)
T KOG1469|consen 30 EKLKEMAKVEGLWNLFLPAVSQKYGAGLTNVEYAHICELMGRSFFAPEVFNCQAPDTGNMEVLHRYGSEEQKSQWLIPLL 109 (392)
T ss_pred HHHHHHHHhcchHHhhhHHHHHhhccCccchhHHHHHHHhccccccchhccCCCCCCCCeeehhhhCCHHHHhhHhHHHh
Confidence 34555567799999999976 5899999999999999999954 33344455555567889999999999999999999
Q ss_pred cCCceEEEEeeCCC-CCCCCCCceEEEEEeCCeEEEeeEeecccCC--CCCCEEEEEEEeCCC--CCCCCeEEEEEeCCC
Q 023999 145 SGEHVGALAMSEPN-AGSDVVGMKCKADRVDGGYIINGNKMWCTNG--PVAQTLVVYAKTDIK--AGSKGITAFIIEKGM 219 (274)
Q Consensus 145 ~G~~~~~~a~te~~-~g~d~~~~~~~a~~~~~g~~l~G~k~~vs~~--~~a~~~lv~a~~~~~--~~~~~~~~~lv~~~~ 219 (274)
.|++..||+||||+ +.||..++++..++++|.|+|||+|+|+||+ +.|...+++.++++. +..+.+++.|||.+.
T Consensus 110 eG~irScFaMTEP~VASSDATNIe~SI~r~~~~YvINg~KWw~sga~~PkCrv~i~mGkt~~~~~~rhkQqSmiLVpM~T 189 (392)
T KOG1469|consen 110 EGNIRSCFAMTEPDVASSDATNIECSIRRDGDSYVINGKKWWISGAGDPKCRIAIFMGKTDNTSASRHKQQSMILVPMNT 189 (392)
T ss_pred cCCceeeEeecCCcccccccccceEEEEEcCCEEEEecceeeecCCCCCceEEEEEecccCCCccchhhcccEEEEecCC
Confidence 99999999999999 6689999999999999999999999999997 678888999988765 234568899999999
Q ss_pred CCeEEeccCcccCCCCCc--eeeEEeceeeeCCCCcccCCCcccccccCC
Q 023999 220 PGFSTAQKLDKLGMRGSD--TCELVFENCFVPNENVLGQEGKGCNSFGEP 267 (274)
Q Consensus 220 ~gv~~~~~~~~~Gl~~~~--~~~v~f~~v~Vp~~~llg~~g~g~~~~~~~ 267 (274)
|||++.++...+|....+ ..+++|+||+||+.+++-.+|.||+|.+.-
T Consensus 190 pGvkiiRpltVfG~~DapgGH~Ei~F~~VrVP~~NmlLGeGrGFEIaQGR 239 (392)
T KOG1469|consen 190 PGVKIIRPLTVFGYTDAPGGHFEIHFENVRVPATNMLLGEGRGFEIAQGR 239 (392)
T ss_pred CCeeEeeeeeeeccccCCCCcceEEEEEEEeeccceeecCCCcceeeccc
Confidence 999999999999987665 578999999999999999999999998753
No 35
>cd01159 NcnH Naphthocyclinone hydroxylase. Naphthocyclinone is an aromatic polyketide and an antibiotic, which is active against Gram-positive bacteria. Polyketides are secondary metabolites, which have important biological functions such as antitumor, immunosupressive or antibiotic activities. NcnH is a hydroxylase involved in the biosynthesis of naphthocyclinone and possibly other polyketides.
Probab=99.97 E-value=2.6e-30 Score=234.55 Aligned_cols=196 Identities=20% Similarity=0.324 Sum_probs=161.8
Q ss_pred HHHHHHhhcCcchhchhccCCCCCcHHHHHHHHhcCCcCCCCCccCCCCCCCHHHHHHHHHHHHhhcCcchhhhhhhhHH
Q 023999 43 VGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAMEEISRASGSVGLSYGAHSNL 122 (274)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~~l~vPe~~GG~g~~~~~~~~v~e~lg~~~~~~~~~~~~~~~~ 122 (274)
++++ .+.+.+.+.+.|+.+.+|. ++|+.+++.||+++.+|++|||.|+++.+.+.++|++++.|+++++.+..+. .
T Consensus 3 ~~~~-~~~~~~~a~~~d~~~~~p~--~~~~~l~~~Gl~~~~vP~e~GG~g~~~~~~~~~~e~la~~~~s~a~~~~~~~-~ 78 (370)
T cd01159 3 AEDL-APLIRERAPEAERARRLPD--EVVRALREIGFFRMFVPKRYGGLEGDFAEFAEAIATLAEACGSAAWVASIVA-T 78 (370)
T ss_pred HHHH-HHHHHHhHHHHHHcCCCCH--HHHHHHHHCChHhhCCchhcCCCCCCHHHHHHHHHHHHhhCchHHHHHHHHH-H
Confidence 3444 3346677778888889999 9999999999999999999999999999999999999999999887655443 4
Q ss_pred HHHHHHhcCCHHHHHHHhHHHhcCCceEEEEeeCCCCCCCCCCceEEEEEeCCeEEEeeEeecccCCCCCCEEEEEEEeC
Q 023999 123 CINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTD 202 (274)
Q Consensus 123 ~~~~l~~~g~~~q~~~~l~~~~~G~~~~~~a~te~~~g~d~~~~~~~a~~~~~g~~l~G~k~~vs~~~~a~~~lv~a~~~ 202 (274)
....+..+++++|++.|++.. .+ ..+.. ..+.+++++++|||+|||+|.|+|++..+|+++|.++.+
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~-~~--~~~g~----------~~~~t~A~~~~~gy~lnG~K~~it~~~~ad~~~v~a~~~ 145 (370)
T cd01159 79 HSRMLAAFPPEAQEEVWGDGP-DT--LLAGS----------YAPGGRAERVDGGYRVSGTWPFASGCDHADWILVGAIVE 145 (370)
T ss_pred HHHHHHhCCHHHHHHHhCCCC-Cc--eEEee----------ecCCceeEEeCCeEEEeccccCccCCCcCceeEeeeECC
Confidence 455677788889988887642 11 11111 134568899999999999999999999999999999975
Q ss_pred CCCCCCCeEEEEEeCCCCCeEEeccCcccCCCCCceeeEEeceeeeCCCCcccCC
Q 023999 203 IKAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQE 257 (274)
Q Consensus 203 ~~~~~~~~~~~lv~~~~~gv~~~~~~~~~Gl~~~~~~~v~f~~v~Vp~~~llg~~ 257 (274)
++++..++++|+||++ ||++.+.|+++|++++++++++|+||+||++++|+..
T Consensus 146 ~~~~~~~~~~~lV~~~--Gv~~~~~~~~~G~r~~~s~~v~f~~v~Vp~~~~l~~~ 198 (370)
T cd01159 146 DDDGGPLPRAFVVPRA--EYEIVDTWHVVGLRGTGSNTVVVDDVFVPEHRTLTAG 198 (370)
T ss_pred CCCCCCcceEEEEEhH--HCEEecccccccccccCCCcEEEcceEcCccceeccc
Confidence 4434557889999987 9999889999999999999999999999999999754
No 36
>cd00567 ACAD Acyl-CoA dehydrogenase. Both mitochondrial acyl-CoA dehydrogenases (ACAD) and peroxisomal acyl-CoA oxidases (AXO) catalyze the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. In contrast, AXO catalyzes a different oxidative half-reaction, in which the reduced FAD is reoxidized by molecular oxygen. The ACAD family includes the eukaryotic beta-oxidation enzymes, short (SCAD), medium (MCAD), long (LCAD) and very-long (VLCAD) chain acyl-CoA dehydrogenases. These enzymes all share high sequence similarity, but differ in their substrate specificities. The ACAD family also includes amino acid catabolism enzymes such as Isovaleryl-CoA dehydrogenase (IVD), short/branched chain acyl-CoA dehydrogenases(SBCAD), Isob
Probab=99.95 E-value=1.1e-27 Score=213.42 Aligned_cols=182 Identities=39% Similarity=0.748 Sum_probs=159.6
Q ss_pred HHHHHHHHHHHHHHHhhcCcchhchhccCCCCCcHHHHHHHHhcCCcCCCCCccCCCCCCCHHHHHHHHHHHHhhcCcch
Q 023999 34 DTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAMEEISRASGSVG 113 (274)
Q Consensus 34 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~~l~vPe~~GG~g~~~~~~~~v~e~lg~~~~~~~ 113 (274)
+++ ++++.+++|+.+.+.+.....+. ++. ..|+.++++||+
T Consensus 2 ~~~-~~~~~~~~~~~~~~~~~~~~~~~---~~~--~~~~~~~~~g~~--------------------------------- 42 (327)
T cd00567 2 EQR-ELRDSAREFAAEELEPYARERRE---TPE--EPWELLAELGLL--------------------------------- 42 (327)
T ss_pred hHH-HHHHHHHHHHHHhccccHHhHHh---hCC--CCHHHHHHHHHH---------------------------------
Confidence 566 89999999999998887664444 444 568888899987
Q ss_pred hhhhhhhHHHHHHHHhcCCHHHHHHHhHHHhcCCceEEEEeeCCCCCCCCCCceEEEEEeCCeEEEeeEeecccCCCCCC
Q 023999 114 LSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQ 193 (274)
Q Consensus 114 ~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~G~~~~~~a~te~~~g~d~~~~~~~a~~~~~g~~l~G~k~~vs~~~~a~ 193 (274)
++...|..+|+++|+++|++.+.+|+++++++++||.+|+|...+.+++++++|||+|||+|.|++++..||
T Consensus 43 --------~~~~~l~~~g~~~~~~~~l~~~~~g~~~~~~a~sE~~~gs~~~~~~~~a~~~~~g~~l~G~k~~~s~~~~ad 114 (327)
T cd00567 43 --------LGAALLLAYGTEEQKERYLPPLASGEAIAAFALTEPGAGSDLAGIRTTARKDGDGYVLNGRKIFISNGGDAD 114 (327)
T ss_pred --------hchHHHHHhCCHHHHHHHHHHHhCCCceEEEEecCCCCCCchhhCEeEEEEeCCEEEEEEEEEEecCCccCC
Confidence 233466678999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEEeCCCC-CCCCeEEEEEeCCCCCeEEeccCcccCCCCCceeeEEeceeeeCCCCcccCCCcccc
Q 023999 194 TLVVYAKTDIKA-GSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGCN 262 (274)
Q Consensus 194 ~~lv~a~~~~~~-~~~~~~~~lv~~~~~gv~~~~~~~~~Gl~~~~~~~v~f~~v~Vp~~~llg~~g~g~~ 262 (274)
+++|+++.++++ +..++.+|+||+++|||++.+.|+++|+++++++.++|+||+||++++++.++.|+.
T Consensus 115 ~~lv~a~~~~~~~~~~~~~~~lvp~~~~Gv~~~~~~~~~G~~~~~~~~v~~~~v~Vp~~~~l~~~~~g~~ 184 (327)
T cd00567 115 LFIVLARTDEEGPGHRGISAFLVPADTPGVTVGRIWDKMGMRGSGTGELVFDDVRVPEDNLLGEEGGGFE 184 (327)
T ss_pred EEEEEEEeCCCCCCCCceEEEEEeCCCCCeEeccccccccCCCCceEEEEECCEEecHHHcCCCCCchHH
Confidence 999999876432 344678999999999999999999999999999999999999999999999888764
No 37
>cd01150 AXO Peroxisomal acyl-CoA oxidase. Peroxisomal acyl-CoA oxidases (AXO) catalyze the first set in the peroxisomal fatty acid beta-oxidation, the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. In a second oxidative half-reaction, the reduced FAD is reoxidized by molecular oxygen. AXO is generally a homodimer, but it has been reported to form a different type of oligomer in yeast. There are several subtypes of AXO's, based on substrate specificity. Palmitoyl-CoA oxidase acts on straight-chain fatty acids and prostanoids; whereas, the closely related Trihydroxycoprostanoly-CoA oxidase has the greatest activity for 2-methyl branched side chains of bile precursors. Pristanoyl-CoA oxidase, acts on 2-methyl branched fatty acids. AXO has an additional domain, C-terminal to the region with similarity to acyl-CoA dehydrogenases, which is included in this alignment.
Probab=99.93 E-value=2.1e-25 Score=213.27 Aligned_cols=163 Identities=26% Similarity=0.372 Sum_probs=146.3
Q ss_pred CHHHHHHHHHHHHhhcCcchhhhhhhhHHHHHHHHhcCCHHHHHHHhHHHhcCCceEEEEeeCCCCCCCCCCceEEEEEe
Q 023999 94 GYLYHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRV 173 (274)
Q Consensus 94 ~~~~~~~v~e~lg~~~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~G~~~~~~a~te~~~g~d~~~~~~~a~~~ 173 (274)
++.+...+.|++++.+++++..+..|..+....|..+|+++|+++|++++.+|++++|+++|||++|+|+.+++|+|+++
T Consensus 80 ~~~~~~~~~e~l~~~d~~~~~~~~~h~~l~~~~i~~~Gt~eq~~~~L~~~~~g~~ig~~a~TE~ghGSdv~~leTtAt~d 159 (610)
T cd01150 80 DPEKMLALTNSLGGYDLSLGAKLGLHLGLFGNAIKNLGTDEHQDYWLQGANNLEIIGCFAQTELGHGSNLQGLETTATYD 159 (610)
T ss_pred CHHHHHHHHHHHhccCccccceeeehHHHHHHHHHHhCCHHHHHHHHHHHhccChheeeeccccCcCcCcccceeEEEEC
Confidence 67788899999999998877666777656777899999999999999999999999999999999999999999999998
Q ss_pred C--CeEEEe-----eEeecccCCC-CCCEEEEEEEeCCCCCCCCeEEEEEeCC-------CCCeEEeccCcccCCCCCce
Q 023999 174 D--GGYIIN-----GNKMWCTNGP-VAQTLVVYAKTDIKAGSKGITAFIIEKG-------MPGFSTAQKLDKLGMRGSDT 238 (274)
Q Consensus 174 ~--~g~~l~-----G~k~~vs~~~-~a~~~lv~a~~~~~~~~~~~~~~lv~~~-------~~gv~~~~~~~~~Gl~~~~~ 238 (274)
+ ++|+|| |+|+|++|+. .|++++|+|+...+.++.++.+|+||.. .|||++.+.++++|+++.++
T Consensus 160 ~~t~efvLntp~~~g~K~wi~~~~~~a~~~vV~Arl~~~g~~~Gv~~FlVp~rd~~~~~~~pGV~i~~~~~k~G~~g~dn 239 (610)
T cd01150 160 PLTQEFVINTPDFTATKWWPGNLGKTATHAVVFAQLITPGKNHGLHAFIVPIRDPKTHQPLPGVTVGDIGPKMGLNGVDN 239 (610)
T ss_pred CCCCeEEECCCCCCceEECccCcccCCCEEEEEEEeccCCCCCCeEEEEEeccccccCCCCCCeEEeecccccCCCCCCe
Confidence 8 889999 9999999875 5999999999754444568999999964 39999998899999999999
Q ss_pred eeEEeceeeeCCCCcccC
Q 023999 239 CELVFENCFVPNENVLGQ 256 (274)
Q Consensus 239 ~~v~f~~v~Vp~~~llg~ 256 (274)
+.+.|+||+||.+++|+.
T Consensus 240 g~l~Fd~vrVP~~nlL~~ 257 (610)
T cd01150 240 GFLQFRNVRIPRENLLNR 257 (610)
T ss_pred EEEEEeeeEecHHHhccc
Confidence 999999999999999986
No 38
>PRK11561 isovaleryl CoA dehydrogenase; Provisional
Probab=99.93 E-value=5.4e-25 Score=206.12 Aligned_cols=187 Identities=21% Similarity=0.345 Sum_probs=148.1
Q ss_pred cHHHHHHHHhcCCcCCCCCccCCCCCCCHHHHHHHHHHHHhhcCcchhhhhhhhHHHHHHHHhcCCHHHHHHHhHHHhcC
Q 023999 67 DVNLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISG 146 (274)
Q Consensus 67 ~~~~~~~l~~~G~~~l~vPe~~GG~g~~~~~~~~v~e~lg~~~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~G 146 (274)
+.++++.+.+.||.++..++++| .+ .....+......+...+....+..++ .+...+..+++++|+++|++++++|
T Consensus 88 ~~~~~~~~~~~g~~~~~~~~~~~-~~-~~~~~~~~~~l~~~~~~g~~cp~~mT--~~a~~~l~~~~~e~~~~~lp~l~sg 163 (538)
T PRK11561 88 WHLLMQGLCANRVHNLAWEEDAR-SG-AFVARAARFMLHAQVEAGTLCPITMT--FAATPLLLQMLPAPFQDWLTPLLSD 163 (538)
T ss_pred HHHHHHHHHHcCCccCCCCCccC-ch-HHHHHHHHHHHHhhhhHHhhchHHHH--HHHHHHHHhcCHHHHHHHHHHHhCC
Confidence 45777888899999998887765 22 12222232333333333333333233 4455566678899999999999999
Q ss_pred C-------------ceEEEEeeCCCCCCCCCCceEEEEEe-CCeEEEeeEeecccCCCCCCEEEEEEEeCCCCCCCCeEE
Q 023999 147 E-------------HVGALAMSEPNAGSDVVGMKCKADRV-DGGYIINGNKMWCTNGPVAQTLVVYAKTDIKAGSKGITA 212 (274)
Q Consensus 147 ~-------------~~~~~a~te~~~g~d~~~~~~~a~~~-~~g~~l~G~k~~vs~~~~a~~~lv~a~~~~~~~~~~~~~ 212 (274)
+ +++++++|||++|||+..++|+|++. +|+|+|||+|+|+| +..||+++|+|+.++ ++++
T Consensus 164 ~~~~~~~~~~~~~~~~~~~a~TEp~~GSDv~~~~T~A~~~~gg~w~LnG~K~fiS-a~~AD~~lVlArt~~-----Gls~ 237 (538)
T PRK11561 164 RYDSHLLPGGQKRGLLIGMGMTEKQGGSDVLSNTTRAERLADGSYRLVGHKWFFS-VPQSDAHLVLAQAKG-----GLSC 237 (538)
T ss_pred CcccccccchhhhhheeEEEecCCCCCCchhhCeeEEEECCCCeEEEEEEEEEEE-chhhCEEEEEEEECC-----ceEE
Confidence 7 45699999999999999999999994 67799999999999 689999999999752 7999
Q ss_pred EEEeCCCC-----CeEEeccCcccCCCCCceeeEEeceeeeCCCCcccCCCcccccccC
Q 023999 213 FIIEKGMP-----GFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGCNSFGE 266 (274)
Q Consensus 213 ~lv~~~~~-----gv~~~~~~~~~Gl~~~~~~~v~f~~v~Vp~~~llg~~g~g~~~~~~ 266 (274)
|+||++.| ||++.+.++++|++++++++|.|+||. +++||.+++|++++.+
T Consensus 238 FlVp~~~p~g~~nGv~i~rl~~klG~r~~~t~ev~f~dv~---~~llG~~g~G~~~i~~ 293 (538)
T PRK11561 238 FFVPRFLPDGQRNAIRLERLKDKLGNRSNASSEVEFQDAI---GWLLGEEGEGIRLILK 293 (538)
T ss_pred EEEECCCCCCCCCceEEecccccccCCCCceeEEEECCHH---HHHCCCCCchHHHHHH
Confidence 99999988 799988899999999999999999983 8899999999987654
No 39
>PTZ00460 acyl-CoA dehydrogenase; Provisional
Probab=99.91 E-value=1.6e-23 Score=200.61 Aligned_cols=146 Identities=24% Similarity=0.383 Sum_probs=127.7
Q ss_pred cchhhhhhhhHHHHHHHHhcCCHHHHHHHhHHHhcCCceEEEEeeCCCCCCCCCCceEEEEEe--CCeEEEe-----eEe
Q 023999 111 SVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRV--DGGYIIN-----GNK 183 (274)
Q Consensus 111 ~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~G~~~~~~a~te~~~g~d~~~~~~~a~~~--~~g~~l~-----G~k 183 (274)
.....+..|..+....|..+|+++|+++||+++.+|++++|+++|||++|||+.+++|+|+++ +|+|+|| |+|
T Consensus 90 ~~~~~~~vh~~~~~~~I~~~GT~eQk~~~Lp~~~~ge~ig~~A~TEpghGSdv~~leTtAt~d~~~defvLntPt~~g~K 169 (646)
T PTZ00460 90 QGTFISTVHFAMVIPAFQVLGTDEQINLWMPSLLNFEIVGCYAQTELGHGSDVQNLETTATYDKQTNEFVIHTPSVEAVK 169 (646)
T ss_pred CCCceEEeeHhhHHHHHHHhCCHHHHHHHHHHHhCCChheeeeecCCCccCCcccceEEEEEcCCCCEEEECCCCCCeEE
Confidence 333345556545566788899999999999999999999999999999999999999999985 6789998 999
Q ss_pred ecccC-CCCCCEEEEEEEeCCCCCCCCeEEEEEeCC-------CCCeEEeccCcccCCCCCceeeEEeceeeeCCCCccc
Q 023999 184 MWCTN-GPVAQTLVVYAKTDIKAGSKGITAFIIEKG-------MPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLG 255 (274)
Q Consensus 184 ~~vs~-~~~a~~~lv~a~~~~~~~~~~~~~~lv~~~-------~~gv~~~~~~~~~Gl~~~~~~~v~f~~v~Vp~~~llg 255 (274)
+|++| +..|++++|+|+...+.++.++.+|+||.. .|||++.+..+++|+++.+++.+.|+||+||.+++||
T Consensus 170 ~wi~~~g~~A~~~vV~Arl~~~~~~~Gi~~FlV~ird~~~~~~~pGV~vg~~~~k~G~~~~dng~l~Fd~VrVP~~nlLg 249 (646)
T PTZ00460 170 FWPGELGFLCNFALVYAKLIVNGKNKGVHPFMVRIRDKETHKPLQGVEVGDIGPKMGYAVKDNGFLSFDHYRIPLDSLLA 249 (646)
T ss_pred EccCCCCCCCCEEEEEEEECcCCCCCceEEEEEeccccCCCCCCCCeEEeccccccCcCCCCceEEEeceEEECHHHhCC
Confidence 99997 689999999999865445678999999932 4999998888999999999999999999999999998
Q ss_pred C
Q 023999 256 Q 256 (274)
Q Consensus 256 ~ 256 (274)
.
T Consensus 250 ~ 250 (646)
T PTZ00460 250 R 250 (646)
T ss_pred c
Confidence 6
No 40
>PLN02443 acyl-coenzyme A oxidase
Probab=99.89 E-value=1.4e-22 Score=194.44 Aligned_cols=143 Identities=24% Similarity=0.397 Sum_probs=125.6
Q ss_pred hhhhhHHHHHHHHhcCCHHHHHHHhHHHhcCCceEEEEeeCCCCCCCCCCceEEEEEe--CCeEEEe-----eEeecccC
Q 023999 116 YGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRV--DGGYIIN-----GNKMWCTN 188 (274)
Q Consensus 116 ~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~G~~~~~~a~te~~~g~d~~~~~~~a~~~--~~g~~l~-----G~k~~vs~ 188 (274)
+..|..+....|..+|+++|+++|++++.+|++++|+++|||++|+|+.++.|+|+.+ +|+|+|| |+|+|++|
T Consensus 99 ~~~~~~~f~~~I~~~GT~eQk~~~L~~~~~g~iig~fA~TE~ghGSdv~~leTtAt~d~~~~efvIntP~~~g~K~wig~ 178 (664)
T PLN02443 99 TDLHWGMFVPAIKGQGTEEQQKKWLPLAYKMQIIGCYAQTELGHGSNVQGLETTATFDPKTDEFVIHSPTLTSSKWWPGG 178 (664)
T ss_pred eeehHhHHHHHHHHhCCHHHHHHHHHHHhCCChheEEEecCCCcccchhhCeEEEEEeCCCCEEEECCCCCCEEEEeecC
Confidence 3445445566788889999999999999999999999999999999999999999988 6789998 99999999
Q ss_pred C-CCCCEEEEEEEeCCCCCCCCeEEEEEeCC-------CCCeEEeccCcccC---CCCCceeeEEeceeeeCCCCcccCC
Q 023999 189 G-PVAQTLVVYAKTDIKAGSKGITAFIIEKG-------MPGFSTAQKLDKLG---MRGSDTCELVFENCFVPNENVLGQE 257 (274)
Q Consensus 189 ~-~~a~~~lv~a~~~~~~~~~~~~~~lv~~~-------~~gv~~~~~~~~~G---l~~~~~~~v~f~~v~Vp~~~llg~~ 257 (274)
+ ..|++++|+|+...+.++.++.+|+||.+ .|||++.+..+++| +++.+++.+.|+||+||.+++||..
T Consensus 179 ~~~~A~~~vV~Arl~~~~~~~Gv~~FlVp~r~~~~~~~~PGV~vgd~g~K~G~~~~~~~dng~l~Fd~VrVP~~nlLg~~ 258 (664)
T PLN02443 179 LGKVSTHAVVYARLITNGKDHGIHGFIVQLRSLDDHSPLPGVTVGDIGMKFGNGAYNTMDNGFLRFDHVRIPRDQMLMRL 258 (664)
T ss_pred CcccCCEEEEEEEECCCCCCCCeEEEEEecCCcCcCCCCCCeEEeccccccCcccCCCCcceEEEeCcEEECHHHcCCcc
Confidence 6 78999999999765445668999999975 69999988899999 5568899999999999999999864
Q ss_pred C
Q 023999 258 G 258 (274)
Q Consensus 258 g 258 (274)
+
T Consensus 259 ~ 259 (664)
T PLN02443 259 S 259 (664)
T ss_pred c
Confidence 3
No 41
>PF02771 Acyl-CoA_dh_N: Acyl-CoA dehydrogenase, N-terminal domain; InterPro: IPR006092 Mammalian Co-A dehydrogenases (1.3.99.3 from EC) are enzymes that catalyse the first step in each cycle of beta-oxidation in mitochondion. Acyl-CoA dehydrogenases [, , ] catalyze the alpha,beta-dehydrogenation of acyl-CoA thioesters to the corresponding trans 2,3-enoyl CoA-products with concommitant reduction of enzyme-bound FAD. Reoxidation of the flavin involves transfer of electrons to ETF (electron transfering flavoprotein). These enzymes are homodimers containing one molecule of FAD. The monomeric enzyme is folded into three domains of approximately equal size. The N-terminal and the C-terminal are mainly alpha-helices packed together, and the middle domain consists of two orthogonal beta-sheets. The flavin ring is buried in the crevise between two alpha-helical domains and the beta-sheet of one subunit, and the adenosine pyrophosphate moiety is stretched into the subunit junction with one formed by two C-terminal domains []. The N-terminal domain of Acyl-CoA dehydrogenase is an all-alpha domain, on dimerisation, the N-terminal of one molecule extends into the other dimer and lies on the surface of the molecule.; GO: 0003995 acyl-CoA dehydrogenase activity, 0055114 oxidation-reduction process; PDB: 2WBI_B 1SIQ_A 1SIR_A 2R0N_A 2R0M_A 2DVL_A 1UKW_B 3MDD_B 1UDY_C 3MDE_B ....
Probab=99.80 E-value=1e-19 Score=137.47 Aligned_cols=113 Identities=41% Similarity=0.775 Sum_probs=103.0
Q ss_pred CHHHHHHHHHHHHHHHHhhcCcchhchhccCCCCCcHHHHHHHHhcCCcCCCCCccCCCCCCCHHHHHHHHHHHHhhcCc
Q 023999 32 FDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAMEEISRASGS 111 (274)
Q Consensus 32 s~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~~l~vPe~~GG~g~~~~~~~~v~e~lg~~~~~ 111 (274)
|++++ ++++.+++|+.+.+.+...+.|+.+.+|. ++|+++.+.||+++.+|+++||.|.++.+.+.+++++++++.+
T Consensus 1 t~~~~-~l~~~~~~~~~~~~~~~~~~~d~~~~~p~--~~~~~l~~~G~~~~~~p~~~GG~~~~~~~~~~~~e~l~~~~~~ 77 (113)
T PF02771_consen 1 TEEQQ-ALREEAREFAEEEIAPHAAEWDEDGRFPR--EVWRALGEAGLLGLAVPEEYGGLGLSPLELAIVLEELARADAS 77 (113)
T ss_dssp SHHHH-HHHHHHHHHHHHHTHHHHHHHHHHTSCHH--HHHHHHHHTTTTSTTSCGGGTSEB-THHHHHHHHHHHHHHTHH
T ss_pred CHHHH-HHHHHHHHHHHHHchHHHHHHHHhCCCCH--HHHHHHHHHHHhhhhccccccCcchhhhhHHHHHHhhhhhccc
Confidence 57888 99999999999999888888887778998 9999999999999999999999999999999999999999999
Q ss_pred chhhhhhhhHHHHHHHHhcCCHHHHHHHhHHHhcCC
Q 023999 112 VGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGE 147 (274)
Q Consensus 112 ~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~G~ 147 (274)
+++.+..|..+++..|..+|+++||++|+|++++|+
T Consensus 78 ~~~~~~~~~~l~~~~i~~~gs~eq~~~~lp~~~~Ge 113 (113)
T PF02771_consen 78 LAFALGVHQSLGAPPIAKFGSEEQKEKWLPRLASGE 113 (113)
T ss_dssp HHHHHHHHHHCHHHHHHHHSHHHHHHHHHHHHHTTS
T ss_pred ccchhhhhhHHHHHHHHHHCCHHHHHHHhHHHhCCC
Confidence 888777776456678999999999999999999986
No 42
>KOG0135 consensus Pristanoyl-CoA/acyl-CoA oxidase [Lipid transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.73 E-value=2.9e-17 Score=148.71 Aligned_cols=186 Identities=26% Similarity=0.346 Sum_probs=156.8
Q ss_pred HHHHHHHhcCCcCCCCCccCCCCCCCHHHHHHHHHHHHhhcCcchhhhhhhhHHHHHHHHhcCCHHHHHHHhHHHhcCCc
Q 023999 69 NLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEH 148 (274)
Q Consensus 69 ~~~~~l~~~G~~~l~vPe~~GG~g~~~~~~~~v~e~lg~~~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~G~~ 148 (274)
..|..+.+.|.+....-+.. -........+.|.+|.++.+++.-+..|..+....+..+|++..++ |+.++-.-++
T Consensus 81 ~r~~~l~~~gv~~~~~~~~~---~~~~~k~~al~E~lg~yd~sls~K~~lh~~lfg~AV~~~GT~rH~~-yi~~~~n~ev 156 (661)
T KOG0135|consen 81 KRIKRLVELGVFKFWLVEDG---PEAELKKFALTEALGIYDQSLSAKLGLHFLLFGNAVKSMGTKRHHD-YIQKTENYEV 156 (661)
T ss_pred HHHHHHHHhccCcceeecCc---hHHHHHHHHHHHHHhhcCcchhhhhhhhhhhhhHHHHhhccHHHHH-HHhhhhccee
Confidence 45666776676554443320 0133467789999999999999889999888888999999998887 9999999999
Q ss_pred eEEEEeeCCCCCCCCCCceEEEEEe--CCeEEEe-----eEeecccC-CCCCCEEEEEEEeCCCCCCCCeEEEEEeCCC-
Q 023999 149 VGALAMSEPNAGSDVVGMKCKADRV--DGGYIIN-----GNKMWCTN-GPVAQTLVVYAKTDIKAGSKGITAFIIEKGM- 219 (274)
Q Consensus 149 ~~~~a~te~~~g~d~~~~~~~a~~~--~~g~~l~-----G~k~~vs~-~~~a~~~lv~a~~~~~~~~~~~~~~lv~~~~- 219 (274)
.+|+|+||..+|||..+++|+|+.+ .+.|+|| -.|.||.| +.+|++.+|+|+.--+....++..|+|+..+
T Consensus 157 ~gcfamTEl~HGSNt~~I~TtatyDP~t~EfVinTP~~~A~K~WiGn~a~~athavvfa~L~~~g~n~G~H~FiiqIRdp 236 (661)
T KOG0135|consen 157 KGCFAMTELGHGSNTKGIQTTATYDPTTEEFVINTPDFSAIKCWIGNAAKHATHAVVFAQLHVPGQNHGLHGFIIQIRDP 236 (661)
T ss_pred eeeEEEeeecCCccccceeeeeeecCCCCeeEecCCcHHHHHHHhccccccceEEEEEEEeeecCccCceeeEEEEeecc
Confidence 9999999999999999999999987 6789997 68999988 5899999999998655556788899999654
Q ss_pred ------CCeEEeccCcccCCCCCceeeEEeceeeeCCCCcccCCC
Q 023999 220 ------PGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEG 258 (274)
Q Consensus 220 ------~gv~~~~~~~~~Gl~~~~~~~v~f~~v~Vp~~~llg~~g 258 (274)
|||.+.+.-.+.|++|..++.+.|+|++||.+++|.+-+
T Consensus 237 kT~~t~PgV~igD~G~K~GlnGVDNG~l~F~nvRIPRenLLNr~g 281 (661)
T KOG0135|consen 237 KTLQTLPGVRIGDCGHKIGLNGVDNGFLWFDNVRIPRENLLNRFG 281 (661)
T ss_pred cccCCCCCceecccccccccccccCceEEEecccCchHHHhhhcc
Confidence 799999989999999999999999999999999996644
No 43
>PF02770 Acyl-CoA_dh_M: Acyl-CoA dehydrogenase, middle domain; InterPro: IPR006091 Acyl-CoA dehydrogenases (1.3.99.3 from EC) are a family of flavoproteins that catalyse the alpha,beta-dehydrogenation of acyl-CoA thioesters to the corresponding trans 2,3-enoyl CoA-products with the concomitant reduction of enzyme-bound FAD. Different family members share a high sequence identity, catalytic mechanisms, and structural properties, but differ in the position of their catalytic bases and in their substrate binding specificity. Butyryl-CoA dehydrogenase [] prefers short chain substrates, medium chain- and long-chain acyl-CoA dehydrogenases prefer medium and long chain substrates, respectively, and Isovaleryl-CoA dehydrogenase [] prefers branched-chain substrates. The monomeric enzyme is folded into three domains of approximately equal size, where the N-terminal domain is all-alpha, the middle domain is an open (5,8) barrel, and the C-terminal domain is a four-helical bundle. The constituent families differ in the numbers of C-terminal domains. This entry represents the middle beta-barrel domain found in medium chain acyl-CoA dehydrogenases, as well as in the related peroxisomal acyl-CoA oxidase-II enzymes. Acyl-CoA oxidase (ACO; 1.3.3.6 from EC) catalyzes the first and rate-determining step of the peroxisomal beta-oxidation of fatty acids [].; GO: 0003995 acyl-CoA dehydrogenase activity, 0055114 oxidation-reduction process; PDB: 3MDD_B 1UDY_C 3MDE_B 2UXW_A 3B96_A 1SIQ_A 1SIR_A 2R0N_A 2R0M_A 2D29_B ....
Probab=99.54 E-value=1.3e-14 Score=93.93 Aligned_cols=51 Identities=41% Similarity=0.748 Sum_probs=46.6
Q ss_pred EEEeeCCCCCCCCCCceEEEEEeCCeEEEeeEeecccCCCCCCEEEEEEEe
Q 023999 151 ALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKT 201 (274)
Q Consensus 151 ~~a~te~~~g~d~~~~~~~a~~~~~g~~l~G~k~~vs~~~~a~~~lv~a~~ 201 (274)
++|++||++|+|+..+++++++++++|+|||+|.||+++..||+++|+||.
T Consensus 1 ~~a~tE~~~g~d~~~~~t~a~~~~~~~~L~G~K~~v~~~~~a~~~~v~ar~ 51 (52)
T PF02770_consen 1 AFALTEPGAGSDLAAVETTARRDGDGYVLNGEKRFVSNAPDADWFLVFART 51 (52)
T ss_dssp EEE--BTTBSSSGGG-SSEEEEETTEEEEEEEEEEEETTTTESEEEEEEEE
T ss_pred CEEEcCCCCCCCcccCEEEeecccceEEEeeEEEEECCcCccCEEEEEEEE
Confidence 689999999999999999999999999999999999999999999999996
No 44
>TIGR02309 HpaB-1 4-hydroxyphenylacetate 3-monooxygenase, oxygenase component. This gene for this monooxygenase is found within apparent operons for the degradation of 4-hydroxyphenylacetic acid in Deinococcus, Thermus and Oceanobacillus. Phylogenetic trees support inclusion of the Bacillus halodurans sequence above trusted although the complete 4-hydroxyphenylacetic acid degradation pathway may not exist in that organism. Generally, this enzyme acts with the assistance of a small flavin reductase domain protein (HpaC) to provide the cycle the flavin reductant for the reaction. This family of sequences is a member of a larger subfamily of monooxygenases (pfam03241).
Probab=99.48 E-value=3.9e-13 Score=125.08 Aligned_cols=129 Identities=22% Similarity=0.361 Sum_probs=102.6
Q ss_pred HHHHHHhHHHhcCCceEEEEeeCCCCCCCC-----CC--ceE-EEEEeCCeEEEeeEeecccCCCCCCEEEEEEEeCCCC
Q 023999 134 AQKDKYLPKLISGEHVGALAMSEPNAGSDV-----VG--MKC-KADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKA 205 (274)
Q Consensus 134 ~q~~~~l~~~~~G~~~~~~a~te~~~g~d~-----~~--~~~-~a~~~~~g~~l~G~k~~vs~~~~a~~~lv~a~~~~~~ 205 (274)
+...+|+..+.+.++..+-+++.|..-... .. +.+ .+++++|||+|||.|.|+|++ .||.++|+++.+..+
T Consensus 127 ~n~~~y~~~~~~~dl~~~~a~~dp~~dRs~~~~~~~d~~~~~~Vve~~~dGiVV~GaK~~~T~~-~ad~~~V~~~~~~~~ 205 (477)
T TIGR02309 127 ENVRNYYEYLRDNDLALTHALTNPQVNRAKPPSEQPDPYIALGVVEQTDKGVIVRGARMTATFP-IADEILIFPSTVLKA 205 (477)
T ss_pred HHHHHHHHHHHHhCceeeccccCCCCCCCCChhhcCCCCcceeEEEEcCCCEEEeCHHHhhhhc-ccceEEEeccCCCCC
Confidence 456689999999999999999998743221 11 222 345678899999999999996 999999999876533
Q ss_pred CC-CC--eEEEEEeCCCCCeEEeccCcccCCCCC-----------ceeeEEeceeeeCCCCc--ccCC---Cccccc
Q 023999 206 GS-KG--ITAFIIEKGMPGFSTAQKLDKLGMRGS-----------DTCELVFENCFVPNENV--LGQE---GKGCNS 263 (274)
Q Consensus 206 ~~-~~--~~~~lv~~~~~gv~~~~~~~~~Gl~~~-----------~~~~v~f~~v~Vp~~~l--lg~~---g~g~~~ 263 (274)
+. ++ ...|+||.++||+++......+|.++. ..+.|.|+||+||++++ +|.. +.|+..
T Consensus 206 ~~~~~~ya~~F~VP~dtpGl~~i~r~~~~~~~~~~D~plssrfde~da~vvFDdV~VPwe~VF~~g~~e~a~~~f~~ 282 (477)
T TIGR02309 206 GAEKDPYALAFAIPTNTPGLHFVCREALDGGDSPFDHPLSSRFEEMDALVIFDDVLVPWERIFILGDVELCNNAYAA 282 (477)
T ss_pred ccCCCCeEEEEEeeCCCCceEEEeCCccCCCCCcccCccccccCCCeEEEEeCceeccHHHhhhcCCHHHHHHHHHH
Confidence 32 22 578999999999999988888888866 67999999999999999 8887 666644
No 45
>KOG0136 consensus Acyl-CoA oxidase [Lipid transport and metabolism]
Probab=99.42 E-value=2e-12 Score=119.85 Aligned_cols=160 Identities=25% Similarity=0.403 Sum_probs=130.7
Q ss_pred hhhhhhhhHHHHHHHHhcCCHHHHHHHhHHHhcCCceEEEEeeCCCCCCCCCCceEEEEEeC--CeEEEe-----eEeec
Q 023999 113 GLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVD--GGYIIN-----GNKMW 185 (274)
Q Consensus 113 ~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~G~~~~~~a~te~~~g~d~~~~~~~a~~~~--~g~~l~-----G~k~~ 185 (274)
..++..|..+..-.|..-+++||.++|+.+....++++|.|-||.++|++++...|+|+.+. +.|+|| ..|+|
T Consensus 108 ~~pl~lH~~MFvp~l~~q~t~EQ~~~Wl~~a~~~~IiGtYAQTElGHGTnl~~LET~AtyD~~T~eFVl~TPt~ta~KWW 187 (670)
T KOG0136|consen 108 GHPLALHYGMFVPTLKGQGTDEQQEKWLSRALNMEIIGTYAQTELGHGTNLRGLETTATYDPKTQEFVLNTPTLTATKWW 187 (670)
T ss_pred CchhhhhhhhhhhHhhcCCCHHHHHHHHHhcccceEEEeehhhhhcccccccccceeeeecCCcceEEecCCCcceeccc
Confidence 34455666677778888899999999999999999999999999999999999999998765 468885 89999
Q ss_pred ccC-CCCCCEEEEEEEeCCCCCCCCeEEEEEeCCC-------CCeEEeccCcccCCCCCceeeEEeceeeeCCCCcccC-
Q 023999 186 CTN-GPVAQTLVVYAKTDIKAGSKGITAFIIEKGM-------PGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQ- 256 (274)
Q Consensus 186 vs~-~~~a~~~lv~a~~~~~~~~~~~~~~lv~~~~-------~gv~~~~~~~~~Gl~~~~~~~v~f~~v~Vp~~~llg~- 256 (274)
..+ +..++|.+|.|+.-......++..|+||..+ |||++++.-.+||.++..++-+.|+||+||.++++-+
T Consensus 188 PGgLG~ssnhAvV~AqL~~~gk~~G~h~FiV~lRd~~th~pL~Gi~iGDIG~Kmg~ng~dNGfL~f~nvRIPR~nmLmr~ 267 (670)
T KOG0136|consen 188 PGGLGKSSNHAVVVAQLITKGKCYGPHPFIVQLRDEDTHKPLPGITVGDIGPKMGFNGVDNGFLGFDNVRIPRTNMLMRH 267 (670)
T ss_pred CCccccccchheeeeeeeecccccccceeEEEccCccccCCCCCCeecCCCccccccCCccceeeecceeechHhhhhhh
Confidence 877 6889999999997655456678889999654 8999999999999999999999999999999998754
Q ss_pred ---CCcccccccCCccccc
Q 023999 257 ---EGKGCNSFGEPKIFNY 272 (274)
Q Consensus 257 ---~g~g~~~~~~~~~~~~ 272 (274)
..+|-.+...+...+|
T Consensus 268 ~kV~~dGtyv~p~~~~l~Y 286 (670)
T KOG0136|consen 268 AKVEPDGTYVKPPHPKLGY 286 (670)
T ss_pred heecCCCccccCCccccce
Confidence 3445333333343333
No 46
>PF11794 HpaB_N: 4-hydroxyphenylacetate 3-hydroxylase N terminal; InterPro: IPR024674 This domain is found in the N terminus of HpaB, which encodes part of the 4-hydroxyphenylacetate 3-hydroxylase from Escherichia coli []. The enzyme is NADH-dependent and uses FAD as the redox chromophore. The domain is also found in pyoverdin chromophore biosynthetic protein (PvcC), which may play a role in one of the proposed hydroxylation steps of pyoverdine chromophore biosynthesis [] and in 4-hydroxybutyryl-CoA dehydratase (4-BUDH), a key enzyme in the metabolism of gamma-aminobutyrate [].; PDB: 3HWC_D 1U8V_D 2YYM_A 2YYI_A 2YYJ_A 2YYL_A 2YYG_A 2YYK_A.
Probab=98.63 E-value=2.9e-07 Score=78.99 Aligned_cols=122 Identities=20% Similarity=0.404 Sum_probs=78.0
Q ss_pred HHHHHHHhHHHhcCCceEEEEeeCCCCCCCCC------CceEEE-EEeCCeEEEeeEeecccCCCCCCEEEEEEEeCCCC
Q 023999 133 PAQKDKYLPKLISGEHVGALAMSEPNAGSDVV------GMKCKA-DRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKA 205 (274)
Q Consensus 133 ~~q~~~~l~~~~~G~~~~~~a~te~~~g~d~~------~~~~~a-~~~~~g~~l~G~k~~vs~~~~a~~~lv~a~~~~~~ 205 (274)
.+...+|...+.+.++..+.+++.|..-.... .+.+.+ +++++|.+|+|.|...|++..+|.++|+-...-.+
T Consensus 122 ~~n~~~y~~~~~~ndL~~t~a~~dPq~DRs~~~~q~d~d~~lrVVee~~dGIvVrGAK~~~T~a~~adei~V~p~~~~~~ 201 (264)
T PF11794_consen 122 AENIRRYYEYVQENDLFLTHAITDPQGDRSKPPHQEDPDVYLRVVEETDDGIVVRGAKMLATGAPYADEILVFPTRAMRP 201 (264)
T ss_dssp HHHHHHHHHHHHHHT--EEEEES--SSSTTSTGGSSSCCSB-EEEEE-SSEEEEEEEEEEEETGCCSSEEEE--SSSSTT
T ss_pred HHHHHHHHHHHHHhCcEeeeeeeCCCcCCCCCccccCCCceEEEEEEcCCCEEEeChhhhhcCCcccccEEEeeccCCCC
Confidence 35566888889999999999999997332211 133444 56789999999999999999999999985443222
Q ss_pred CCCC-eEEEEEeCCCCCeEEeccCcccCCC------------CCceeeEEeceeeeCCCCcc
Q 023999 206 GSKG-ITAFIIEKGMPGFSTAQKLDKLGMR------------GSDTCELVFENCFVPNENVL 254 (274)
Q Consensus 206 ~~~~-~~~~lv~~~~~gv~~~~~~~~~Gl~------------~~~~~~v~f~~v~Vp~~~ll 254 (274)
+++. -..|.||.++||+++........-+ ...-+-|.|+||+||++.++
T Consensus 202 ~d~dyAv~FavP~~tpGlk~i~R~s~~~~~~~~~D~PlssrfdE~Da~vvFDdVfVPWeRVF 263 (264)
T PF11794_consen 202 GDEDYAVAFAVPMNTPGLKIICRESYADGRRSPFDHPLSSRFDEMDALVVFDDVFVPWERVF 263 (264)
T ss_dssp CCGGG-EEEEEETT-TTEEEEE---TTGCCG-TTT-TTTTS----EEEEEEEEEEEEGGGEE
T ss_pred CCCceEEEEEccCCCCCEEEEeCCCCCCCccccCcCCcccccCCceEEEEECCcccchhhcc
Confidence 3333 4579999999999987643211111 11236699999999998764
No 47
>COG2368 Aromatic ring hydroxylase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.42 E-value=1.7e-06 Score=78.88 Aligned_cols=121 Identities=18% Similarity=0.328 Sum_probs=86.4
Q ss_pred HHHHHHhHHHhcCCceEEEEeeCCCCCCCCC-------CceEEE-EEeCCeEEEeeEeecccCCCCCCEEEEE-EEeCCC
Q 023999 134 AQKDKYLPKLISGEHVGALAMSEPNAGSDVV-------GMKCKA-DRVDGGYIINGNKMWCTNGPVAQTLVVY-AKTDIK 204 (274)
Q Consensus 134 ~q~~~~l~~~~~G~~~~~~a~te~~~g~d~~-------~~~~~a-~~~~~g~~l~G~k~~vs~~~~a~~~lv~-a~~~~~ 204 (274)
+.-.+|+..+...++..+-|++.|..-.... .+.+.+ +++++|.+++|.|..+|++..+|..+|+ .+....
T Consensus 131 ~n~~~~~k~vqk~DL~~~hA~tdpk~dRsk~p~e~~dpdiyvrVvee~~dGIVVrGAK~~aT~~a~tdei~V~Pt~~~~~ 210 (493)
T COG2368 131 ENAREYYKEVQKNDLALTHAITDPKGDRSKRPSEQKDPDIYVRVVEETEDGIVVRGAKALATGSALTDEIFVLPTRSMQE 210 (493)
T ss_pred HHHHHHHHHHHhcCceeeeceecCCccCCCChhhccCCCeeEEEEEEecCceEEEChHHHhccccccceEEEeeccccCC
Confidence 4566899999999999999999986443211 233444 4678999999999999999999998888 443322
Q ss_pred CCCCCeEEEEEeCCCCCeEEeccCc---ccCCCCCce------------eeEEeceeeeCCCCcc
Q 023999 205 AGSKGITAFIIEKGMPGFSTAQKLD---KLGMRGSDT------------CELVFENCFVPNENVL 254 (274)
Q Consensus 205 ~~~~~~~~~lv~~~~~gv~~~~~~~---~~Gl~~~~~------------~~v~f~~v~Vp~~~ll 254 (274)
+..+--..|.+|.++|||++..... .-|+.+.+. +-|.||||+||++.++
T Consensus 211 ~d~dfAv~FaiP~dt~GvK~i~r~s~~~~~~~~~g~fd~plssrfde~dailVfDdVfVPWERVf 275 (493)
T COG2368 211 DDKDFAVAFAIPMDTEGVKFICRRSYELGRGAEGGPFDYPLSSRFDENDAILVFDDVFVPWERVF 275 (493)
T ss_pred CCCceEEEEEcccCCCceEEEecCcchhhcccCCCCCCCccccccccCceEEEecccccchhhee
Confidence 2222345799999999998765431 122222222 3399999999999875
No 48
>TIGR02310 HpaB-2 4-hydroxyphenylacetate 3-monooxygenase, oxygenase component. This gene for this monooxygenase is found within apparent operons for the degradation of 4-hydroxyphenylacetic acid in Shigella, Photorhabdus and Pasteurella. The family modelled by this alignment is narrowly limited to gammaproteobacteria to exclude other aromatic hydroxylases involved in various secondary metabolic pathways. Generally, this enzyme acts with the assistance of a small flavin reductase domain protein (HpaC) to provide the cycle the flavin reductant for the reaction. This family of sequences is a member of a larger subfamily of monooxygenases (pfam03241).
Probab=98.36 E-value=8.1e-06 Score=76.57 Aligned_cols=122 Identities=17% Similarity=0.250 Sum_probs=85.6
Q ss_pred HHHHHHHhHHHhcCCceEEEEeeCCCCCCCC-----CCceEE-EEEeCCeEEEeeEeecccCCCCCCEEEEE-EEeCCCC
Q 023999 133 PAQKDKYLPKLISGEHVGALAMSEPNAGSDV-----VGMKCK-ADRVDGGYIINGNKMWCTNGPVAQTLVVY-AKTDIKA 205 (274)
Q Consensus 133 ~~q~~~~l~~~~~G~~~~~~a~te~~~g~d~-----~~~~~~-a~~~~~g~~l~G~k~~vs~~~~a~~~lv~-a~~~~~~ 205 (274)
.+...+|+..+.+.++..+-+++.|..-... ..+-.. ++++++|.+|+|.|...|++..+|.++|+ ....--.
T Consensus 135 ~~n~~~yy~~~qenDL~~~hA~~dPk~DRsk~p~e~~D~~v~VVee~~dGIVVrGAK~~aT~a~~a~ei~V~~~~~~~~~ 214 (519)
T TIGR02310 135 EDNARNWYKRIQESCLYFNHAIVNPPIDRNKPIDQVKDVYIKIEEERDDGIVVSGAKVVATNSALTHYNFIGFGSAQIIG 214 (519)
T ss_pred HHHHHHHHHHHHHhCceeecceeCCCCCCCCccccCCCCceEEEEEcCCcEEEeCHHHHhcccchhcceeeccCcccccC
Confidence 3556789999999999999999998744321 122233 45678899999999999999999998883 3321001
Q ss_pred CCCCe-EEEEEeCCCCCeEEeccCccc--------CCC-------CCceeeEEeceeeeCCCCcc
Q 023999 206 GSKGI-TAFIIEKGMPGFSTAQKLDKL--------GMR-------GSDTCELVFENCFVPNENVL 254 (274)
Q Consensus 206 ~~~~~-~~~lv~~~~~gv~~~~~~~~~--------Gl~-------~~~~~~v~f~~v~Vp~~~ll 254 (274)
+++.+ ..|.||.++||+++....... ..+ ...-+-|.||||+||+++++
T Consensus 215 ~d~dyAvaFavP~dtpGlk~IcR~s~~~~~~~~~~~fD~PlssrfdE~Da~vVFDdVfVPWErVF 279 (519)
T TIGR02310 215 DNDDFALMFIAPMDAEGVKLICRHSYELVAGATGSPFDYPLSSRFDENDAILVMDSVFIPWENVL 279 (519)
T ss_pred CCCCeEEEEEeEcCCCceEEEeCCchhhccccCCCCCcCccccccCCceEEEEeCCcccchHHce
Confidence 13344 478999999999987542111 011 22245699999999999875
No 49
>PF14749 Acyl-CoA_ox_N: Acyl-coenzyme A oxidase N-terminal; PDB: 2FON_A 1W07_B 1IS2_B 2DDH_A.
Probab=85.12 E-value=1.3 Score=33.60 Aligned_cols=33 Identities=30% Similarity=0.473 Sum_probs=26.2
Q ss_pred hhhhhHHHHHHHHhcCCHHHHHHHhHHHhcCCc
Q 023999 116 YGAHSNLCINQLVRHGSPAQKDKYLPKLISGEH 148 (274)
Q Consensus 116 ~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~G~~ 148 (274)
+..|..+..-.|...|+++|+++|+|...+.++
T Consensus 92 ~~lH~~mFip~I~~qgt~EQ~~~Wlp~a~~~~I 124 (125)
T PF14749_consen 92 LGLHFGMFIPTIMGQGTEEQQAKWLPKAENYEI 124 (125)
T ss_dssp HHHHHHTHHHHHHHHS-HHHHHHHHHHHHTTSS
T ss_pred hhhHHHHHHHHHHHcCCHHHHHHHHHHHHCCcc
Confidence 456766777888999999999999999877664
No 50
>KOG4634 consensus Mitochondrial F1F0-ATP synthase, subunit Cf6 (coupling factor 6) [Energy production and conversion]
Probab=41.06 E-value=17 Score=26.10 Aligned_cols=47 Identities=21% Similarity=0.176 Sum_probs=32.2
Q ss_pred CccccchhhhhhhhhhhccccccccCCCCCCCHHHHHHHHHHHHHHHHh
Q 023999 1 MQRLLGARSLCASFFTKKQKHSAAFSSTSLLFDDTQLQFKESVGQFARE 49 (274)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~~~~~~~~~ 49 (274)
+||+|+..+++-+.-+..+-..+ +...-..++-|+ .+.+++|++-.+
T Consensus 2 ~qrlfr~s~vlrs~vs~~~gv~a-~a~nk~~DpIqq-lFldKvREy~~k 48 (105)
T KOG4634|consen 2 LQRLFRFSSVLRSAVSVHLGVTA-TAFNKELDPIQQ-LFLDKVREYKKK 48 (105)
T ss_pred hHHHHHHHHHHHHHHHHhhchhh-hHHHhhhChHHH-HHHHHHHHHHhc
Confidence 47889888877766654443322 223345677888 999999999655
No 51
>PF05284 DUF736: Protein of unknown function (DUF736); InterPro: IPR007948 This family consists of several uncharacterised bacterial proteins of unknown function.
Probab=40.25 E-value=1.3e+02 Score=22.20 Aligned_cols=72 Identities=17% Similarity=0.223 Sum_probs=45.4
Q ss_pred EEeC-CeEEEeeEeecccCCCCCCEEEEEEEeCCCCCCCCeEEEEEeCCCCCeEEeccCcccCCC-CCceeeEEeceeee
Q 023999 171 DRVD-GGYIINGNKMWCTNGPVAQTLVVYAKTDIKAGSKGITAFIIEKGMPGFSTAQKLDKLGMR-GSDTCELVFENCFV 248 (274)
Q Consensus 171 ~~~~-~g~~l~G~k~~vs~~~~a~~~lv~a~~~~~~~~~~~~~~lv~~~~~gv~~~~~~~~~Gl~-~~~~~~v~f~~v~V 248 (274)
++++ ++| .|+-.-. .-+++..+|.......+....+.+++-+.+ +++++.-|...+-+ +...-.+++++=..
T Consensus 7 t~~~~~~~--~G~I~TL--~~~~~i~lvP~~~~~~e~aPdyRV~~~~~~--~~EvGaaW~~~~~~tg~~Ylsl~LddP~f 80 (107)
T PF05284_consen 7 TRTEDGGF--TGRIRTL--TLDAKIRLVPNESKDSENAPDYRVYAGPRG--GVEVGAAWKKTSKDTGRDYLSLKLDDPSF 80 (107)
T ss_pred EecCCCcc--EEEEEEe--EecccEEEEeCCCCCCCCCCCEEEEecCCC--CCceeeeehhhccccCCceEEEEEcCCCC
Confidence 3444 453 4444333 345666666655433344456655555333 89999999998888 78888999988544
No 52
>PF01726 LexA_DNA_bind: LexA DNA binding domain; InterPro: IPR006199 This is the DNA binding domain of the LexA SOS regulon repressor which prevents expression of DNA repair proteins in bacteria. The aligned region contains a variant form of the helix-turn-helix DNA binding motif []. This domain usually at the N terminus is found associated with IPR006198 from INTERPRO the auto-proteolytic domain of LexA 3.4.21.88 from EC.; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 1LEA_A 1JHH_A 3JSP_A 1JHF_A 3JSO_B 1LEB_A 3K2Z_A.
Probab=39.72 E-value=64 Score=21.38 Aligned_cols=53 Identities=13% Similarity=0.148 Sum_probs=29.7
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhh-cCcchhchhccCCCCC---cHHHHHHHHhcCCcC
Q 023999 28 TSLLFDDTQLQFKESVGQFAREN-IAPRAANIDQSNSFPQ---DVNLWKLMGNFNLHG 81 (274)
Q Consensus 28 ~~~~s~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~---~~~~~~~l~~~G~~~ 81 (274)
|..+++.|+ .+.+-+.+|..+. ..|..+++-+.=.+.. ...-++.|.+.|+..
T Consensus 1 M~~LT~rQ~-~vL~~I~~~~~~~G~~Pt~rEIa~~~g~~S~~tv~~~L~~Le~kG~I~ 57 (65)
T PF01726_consen 1 MKELTERQK-EVLEFIREYIEENGYPPTVREIAEALGLKSTSTVQRHLKALERKGYIR 57 (65)
T ss_dssp -----HHHH-HHHHHHHHHHHHHSS---HHHHHHHHTSSSHHHHHHHHHHHHHTTSEE
T ss_pred CCCCCHHHH-HHHHHHHHHHHHcCCCCCHHHHHHHhCCCChHHHHHHHHHHHHCcCcc
Confidence 457899999 9999999998765 4455555433322221 135667788888753
No 53
>PF02084 Bindin: Bindin; InterPro: IPR000775 Bindin, the major protein component of the acrosome granule of sea urchin sperm, mediates species-specific adhesion of sperm to the egg surface during fertilisation [, ]. The protein coats the acrosomal process after externalisation by the acrosome reaction; it binds to sulphated, fucose-containing polysaccharides on the vitelline-layer receptor proteoglycans that cover the egg plasma membrane. Bindins from different genera show high levels of sequence similarity in both the mature bindin domain and in the probindin precursor region. The most highly conserved region is a 42-residue segment in the central portion of the mature bindin protein. This domain may be responsible for conserved functions of bindin, while the more highly divergent flanking regions may be responsible for its species-specific properties [].; GO: 0007342 fusion of sperm to egg plasma membrane
Probab=38.47 E-value=1.2e+02 Score=25.47 Aligned_cols=66 Identities=11% Similarity=0.186 Sum_probs=47.9
Q ss_pred ccCCCCCcHHHHHHHHh-cCCcCCCCCccCCCCCCCHHHHHHHHHHHHhhcCcchhhhhhhhHHHHHHHHhcCCHHHHHH
Q 023999 60 QSNSFPQDVNLWKLMGN-FNLHGITAPQEYGGLGLGYLYHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDK 138 (274)
Q Consensus 60 ~~~~~~~~~~~~~~l~~-~G~~~l~vPe~~GG~g~~~~~~~~v~e~lg~~~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~ 138 (274)
+...+.. +++++++. +|.+++.+|.+- -++.++-.+++.|=.| +.+|...+.++.|++
T Consensus 97 EetTISA--Kvm~~ikavLgaTKiDLPVDI----NDPYDlGLLLRhLRHH---------------SNLLAnIgdP~Vreq 155 (238)
T PF02084_consen 97 EETTISA--KVMEDIKAVLGATKIDLPVDI----NDPYDLGLLLRHLRHH---------------SNLLANIGDPEVREQ 155 (238)
T ss_pred CCccccH--HHHHHHHHHhccccccccccc----CChhhHHHHHHHHHHH---------------HHHHhhcCCHHHHHH
Confidence 3455667 88998877 899999999752 2567787777776543 246667788999998
Q ss_pred HhHHHhcC
Q 023999 139 YLPKLISG 146 (274)
Q Consensus 139 ~l~~~~~G 146 (274)
.|..+.+.
T Consensus 156 VLsAMqEe 163 (238)
T PF02084_consen 156 VLSAMQEE 163 (238)
T ss_pred HHHHHhhh
Confidence 88776543
No 54
>PF10001 DUF2242: Uncharacterized protein conserved in bacteria (DUF2242); InterPro: IPR018718 This family includes putative lipoproteins and uncharacterised proteins.
Probab=38.02 E-value=1.7e+02 Score=21.98 Aligned_cols=50 Identities=6% Similarity=0.087 Sum_probs=26.4
Q ss_pred EEeeEeecccCCCCCCEEEEEEEeCCCCCCCCeEEEEEeCCCCCeEEecc
Q 023999 178 IINGNKMWCTNGPVAQTLVVYAKTDIKAGSKGITAFIIEKGMPGFSTAQK 227 (274)
Q Consensus 178 ~l~G~k~~vs~~~~a~~~lv~a~~~~~~~~~~~~~~lv~~~~~gv~~~~~ 227 (274)
.|.|+|.|-......--+-+.....++......+..+|..-+..+.+...
T Consensus 22 ~v~G~K~FQp~~d~h~qi~~~vvCa~~~~~~~~s~~fvnAlQdrY~lKks 71 (121)
T PF10001_consen 22 RVDGRKNFQPEDDVHAQIEFRVVCAPDGSGGQSSTVFVNALQDRYALKKS 71 (121)
T ss_pred eEeeeeccccCCCceEEEEEEEEECCCCCCCeeEEEEEEeeeeeeeeeec
Confidence 58899999875432222222222233222334456677666666666544
No 55
>PF12584 TRAPPC10: Trafficking protein particle complex subunit 10, TRAPPC10; InterPro: IPR022233 The trafficking protein particle complex TRAPP is a multi-protein complex needed in the early stages of the secretory pathway. To date, two kinds of TRAPP complexes have been studied, TRAPPI and TRAPP II. These complexes differ in subunit composition []. TRAPP I binds vesicles derived from the endoplasmic reticulum bringing them closer to the acceptor membrane. This entry represents a domain which forms part of the TRAPP complex for mediating vesicle docking and fusion in the Golgi apparatus. The fungal version is referred to as Trs130, and an alternative vertebrate alias is TMEM1 [, ].
Probab=28.08 E-value=1.8e+02 Score=22.54 Aligned_cols=15 Identities=7% Similarity=0.275 Sum_probs=10.9
Q ss_pred EeCCeEEEeeEeecc
Q 023999 172 RVDGGYIINGNKMWC 186 (274)
Q Consensus 172 ~~~~g~~l~G~k~~v 186 (274)
...+.|.|+|+|+..
T Consensus 66 a~~~~WlV~Grrrg~ 80 (147)
T PF12584_consen 66 ADSDNWLVSGRRRGV 80 (147)
T ss_pred cCCCcEEEeccCcce
Confidence 345669999998753
No 56
>COG4953 PbpC Membrane carboxypeptidase/penicillin-binding protein PbpC [Cell envelope biogenesis, outer membrane]
Probab=22.90 E-value=1.3e+02 Score=29.75 Aligned_cols=47 Identities=11% Similarity=0.099 Sum_probs=38.9
Q ss_pred HHHHHHHhcCCcCCCCCccC--------CCCCCCHHHHHHHHHHHHhhcCcchhhh
Q 023999 69 NLWKLMGNFNLHGITAPQEY--------GGLGLGYLYHCIAMEEISRASGSVGLSY 116 (274)
Q Consensus 69 ~~~~~l~~~G~~~l~vPe~~--------GG~g~~~~~~~~v~e~lg~~~~~~~~~~ 116 (274)
.+...|.+.|+ .+..|+++ ||.|+++.|++.+...+++..-...+-+
T Consensus 407 rf~~rl~~ag~-~L~~P~~~~~GLsLiLGg~gi~L~dLa~lYa~lAn~G~~~~L~~ 461 (733)
T COG4953 407 RFAARLRQAGV-HLYLPEGAAPGLSLILGGAGITLEDLAQLYAALANQGKAGPLRD 461 (733)
T ss_pred HHHHHHHhCCC-CCCCCCccCCCeeEEecCCcccHHHHHHHHHHHhcCCceecccc
Confidence 67888999998 88888884 8999999999999999999765544333
Done!