Query 023999
Match_columns 274
No_of_seqs 132 out of 1390
Neff 8.8
Searched_HMMs 29240
Date Mon Mar 25 16:26:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023999.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023999hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3pfd_A Acyl-COA dehydrogenase; 100.0 4E-45 1.4E-49 332.7 19.2 234 29-266 17-250 (393)
2 2d29_A Acyl-COA dehydrogenase; 100.0 2.5E-44 8.6E-49 326.8 23.2 235 29-266 5-243 (387)
3 3p4t_A Putative acyl-COA dehyd 100.0 1.8E-44 6.1E-49 329.4 22.2 234 29-266 24-258 (403)
4 2vig_A Short-chain specific ac 100.0 1.6E-44 5.4E-49 328.5 21.6 234 29-265 4-237 (391)
5 3r7k_A Probable acyl COA dehyd 100.0 1.6E-44 5.6E-49 329.7 21.4 235 29-267 27-262 (403)
6 1ukw_A Acyl-COA dehydrogenase; 100.0 1.7E-44 5.8E-49 327.1 20.8 233 30-266 4-236 (379)
7 3nf4_A Acyl-COA dehydrogenase; 100.0 4.8E-44 1.6E-48 324.9 23.1 233 29-267 14-246 (387)
8 1buc_A Butyryl-COA dehydrogena 100.0 3.1E-44 1.1E-48 325.7 21.5 235 29-266 3-241 (383)
9 2jif_A Short/branched chain sp 100.0 3E-44 1E-48 328.1 21.4 235 28-266 26-260 (404)
10 2pg0_A Acyl-COA dehydrogenase; 100.0 5.4E-44 1.9E-48 324.4 22.4 234 28-266 7-243 (385)
11 1ivh_A Isovaleryl-COA dehydrog 100.0 5.8E-44 2E-48 325.1 20.7 237 29-266 11-249 (394)
12 2dvl_A Acyl-COA dehydrogenase; 100.0 1E-43 3.5E-48 321.2 21.0 228 30-265 2-229 (372)
13 1egd_A Medium chain acyl-COA d 100.0 1.2E-43 4.1E-48 323.2 21.3 234 29-266 14-250 (396)
14 1rx0_A Acyl-COA dehydrogenase 100.0 1.8E-43 6.3E-48 321.8 21.8 234 29-267 17-250 (393)
15 3ii9_A Glutaryl-COA dehydrogen 100.0 4.6E-44 1.6E-48 326.0 15.6 233 29-266 17-249 (396)
16 3sf6_A Glutaryl-COA dehydrogen 100.0 7.4E-43 2.5E-47 318.7 22.1 227 29-265 28-255 (403)
17 3mpi_A Glutaryl-COA dehydrogen 100.0 1.1E-43 3.7E-48 323.6 16.5 233 29-266 3-240 (397)
18 3swo_A Glutaryl-COA dehydrogen 100.0 6E-43 2.1E-47 318.9 19.5 228 29-266 24-251 (399)
19 2eba_A Putative glutaryl-COA d 100.0 1E-42 3.5E-47 316.0 20.3 230 29-266 9-239 (385)
20 4hr3_A Putative acyl-COA dehyd 100.0 2.7E-42 9.3E-47 316.1 18.9 235 29-266 7-266 (415)
21 1r2j_A Protein FKBI; polyketid 100.0 4.6E-42 1.6E-46 309.7 19.9 216 41-264 2-217 (366)
22 2ix5_A Acyl-coenzyme A oxidase 100.0 7E-42 2.4E-46 315.1 20.8 227 30-264 54-280 (436)
23 3owa_A Acyl-COA dehydrogenase; 100.0 4.3E-42 1.5E-46 326.8 19.1 236 23-266 25-263 (597)
24 1siq_A GCD, glutaryl-COA dehyd 100.0 9.9E-41 3.4E-45 303.6 20.7 226 29-263 12-239 (392)
25 2z1q_A Acyl-COA dehydrogenase; 100.0 7.5E-41 2.6E-45 317.9 19.1 232 27-266 24-258 (577)
26 2c12_A Nitroalkane oxidase; ox 100.0 1.3E-40 4.4E-45 307.1 17.6 235 29-265 4-270 (439)
27 3mkh_A Nitroalkane oxidase; ox 100.0 9E-41 3.1E-45 308.0 14.8 236 28-266 4-268 (438)
28 2uxw_A VERY-long-chain specifi 100.0 4E-40 1.4E-44 314.0 19.4 234 29-266 44-287 (607)
29 3mxl_A Nitrososynthase; flavin 100.0 4.4E-40 1.5E-44 299.4 14.1 228 29-265 7-242 (395)
30 3m9v_A FAD-dependent oxidoredu 100.0 3.3E-39 1.1E-43 297.7 19.7 228 28-264 17-252 (439)
31 2wbi_A Acyl-COA dehydrogenase 100.0 5.6E-39 1.9E-43 295.3 17.9 233 29-265 21-273 (428)
32 2or0_A Hydroxylase; APC7385, r 100.0 8.5E-37 2.9E-41 279.5 13.1 209 28-256 15-227 (414)
33 2jbr_A P-hydroxyphenylacetate 100.0 1.5E-35 5.3E-40 271.9 15.3 208 28-257 32-239 (422)
34 2rfq_A 3-HSA hydroxylase, oxyg 100.0 3.9E-35 1.3E-39 266.8 14.7 200 38-256 11-210 (394)
35 1w07_A Acyl-COA oxidase; oxido 100.0 1.1E-30 3.6E-35 251.4 14.2 218 32-262 28-269 (659)
36 3djl_A Protein AIDB; alpha hel 100.0 1.9E-28 6.6E-33 230.4 13.8 185 67-266 88-293 (541)
37 2ddh_A Acyl-COA oxidase; beta 99.9 6.1E-26 2.1E-30 218.2 17.8 210 32-257 26-256 (661)
38 1u8v_A Gamma-aminobutyrate met 99.9 1.8E-23 6.3E-28 194.4 13.3 139 125-264 118-285 (490)
39 2yyk_A 4-hydroxyphenylacetate- 99.9 1.2E-21 4.2E-26 181.8 12.5 130 132-263 122-274 (481)
40 3hwc_A Chlorophenol-4-monooxyg 99.8 5.8E-21 2E-25 177.6 11.2 130 133-265 132-282 (515)
41 4g5e_A 2,4,6-trichlorophenol 4 99.6 5.6E-15 1.9E-19 137.6 9.4 133 133-265 133-283 (517)
No 1
>3pfd_A Acyl-COA dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: FDA; 2.10A {Mycobacterium thermoresistibile}
Probab=100.00 E-value=4e-45 Score=332.69 Aligned_cols=234 Identities=35% Similarity=0.585 Sum_probs=213.7
Q ss_pred CCCCHHHHHHHHHHHHHHHHhhcCcchhchhccCCCCCcHHHHHHHHhcCCcCCCCCccCCCCCCCHHHHHHHHHHHHhh
Q 023999 29 SLLFDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAMEEISRA 108 (274)
Q Consensus 29 ~~~s~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~~l~vPe~~GG~g~~~~~~~~v~e~lg~~ 108 (274)
+.++++++ ++++.+++|+++.+.+.+.+.++.+.+|. ++|+.|.+.||+++.+|++|||.|+++.+++.++|+++++
T Consensus 17 ~~~~~e~~-~l~~~~r~~~~~~~~~~~~~~d~~~~~~~--~~~~~l~~~G~~~~~~P~~~GG~g~~~~~~~~v~eela~~ 93 (393)
T 3pfd_A 17 FQLPEEHI-ALREAIRALAEKEIAPYAAEVDEKARFPE--EALAALNSSGFSAIHVPEEYGGQGADSVATCIVIEEVARV 93 (393)
T ss_dssp -----CHH-HHHHHHHHHHHHHTGGGHHHHHHTTCCCH--HHHHHHHHHTCSCTTSCGGGTCCCCCHHHHHHHHHHHHTT
T ss_pred CCCCHHHH-HHHHHHHHHHHHhCchHHHHHhhhCCCCH--HHHHHHHHCCCCCCCCChhHCCCCCCHHHHHHHHHHHHhh
Confidence 46788999 99999999999999999888999999999 9999999999999999999999999999999999999999
Q ss_pred cCcchhhhhhhhHHHHHHHHhcCCHHHHHHHhHHHhcCCceEEEEeeCCCCCCCCCCceEEEEEeCCeEEEeeEeecccC
Q 023999 109 SGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTN 188 (274)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~G~~~~~~a~te~~~g~d~~~~~~~a~~~~~g~~l~G~k~~vs~ 188 (274)
++++++.+..|. .+...+..+++++||++|++++++|+.++++++|||++|+|+..++|++++++|||+|||+|.|+||
T Consensus 94 ~~~~~~~~~~~~-~~~~~l~~~g~~~q~~~~l~~~~~G~~~~~~a~tEp~~gsd~~~~~t~A~~~~~g~~lnG~K~~~s~ 172 (393)
T 3pfd_A 94 DCSASLIPAVNK-LGTMGLILRGSEELKKQVLPAVASGEAMASYALSEREAGSDAASMRTRAVADGDDWILNGSKCWITN 172 (393)
T ss_dssp CHHHHHHHHHHH-HTTHHHHHHCCHHHHHHHHHHHHTTSCCEEEECCBTTBSSCGGGCCCEEEEETTEEEEEEEEEEEET
T ss_pred CchHHHHHHHHH-HHHHHHHHhCCHHHHHHHHHHHhCCCceeEEEEcCCCCCCCcccCeeEEEEcCCEEEEeeEEEEecC
Confidence 999887666555 5566788899999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCEEEEEEEeCCCCCCCCeEEEEEeCCCCCeEEeccCcccCCCCCceeeEEeceeeeCCCCcccCCCcccccccC
Q 023999 189 GPVAQTLVVYAKTDIKAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGCNSFGE 266 (274)
Q Consensus 189 ~~~a~~~lv~a~~~~~~~~~~~~~~lv~~~~~gv~~~~~~~~~Gl~~~~~~~v~f~~v~Vp~~~llg~~g~g~~~~~~ 266 (274)
+..||+++|+++.+++.+.+++++|+||+++|||++.++|+++|++++++++|.|+||+||++++||.+++|+.+++.
T Consensus 173 ~~~Ad~~~v~a~~~~~~~~~g~~~flV~~~~pGv~v~~~~~~~G~~~~~~~~v~fddv~Vp~~~~lg~~g~g~~~~~~ 250 (393)
T 3pfd_A 173 GGKSTWYTVMAVTDPDKGANGISAFMVHKDDEGFTVGPKERKLGIKGSPTTELYFENCRIPGDRIIGEPGTGFKTALA 250 (393)
T ss_dssp TTTCSEEEEEEESCGGGGGGGEEEEEEETTSTTEEEEEECCBSSCTTSCEEEEEEEEEEEEGGGEESSTTCHHHHHHH
T ss_pred CcccCEEEEEEEeCCCCCCCceEEEEEECCCCCeEecCCCCcccCCCCCceEEEEccEEEcHHHcCCCCCchHHHHHH
Confidence 999999999999876544567899999999999999999999999999999999999999999999999999876543
No 2
>2d29_A Acyl-COA dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; HET: FAD; 1.65A {Thermus thermophilus} SCOP: a.29.3.1 e.6.1.1 PDB: 1ws9_A 2cx9_A*
Probab=100.00 E-value=2.5e-44 Score=326.78 Aligned_cols=235 Identities=36% Similarity=0.613 Sum_probs=215.8
Q ss_pred CCCCHHHHHHHHHHHHHHHHhhcCcchhchhccCCCCCcHHHHHHHHhcCCcCCCCCccCCCCCCCHHHHHHHHHHHHhh
Q 023999 29 SLLFDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAMEEISRA 108 (274)
Q Consensus 29 ~~~s~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~~l~vPe~~GG~g~~~~~~~~v~e~lg~~ 108 (274)
..++++++ ++++.+++|+.+.+.+.+.+.|+.+.+|. ++|+.+.+.||+++.+|++|||.|+++.+.+.++|+++++
T Consensus 5 ~~~~~~~~-~l~~~~~~~~~~~~~~~~~~~d~~~~~~~--~~~~~l~~~Gl~~~~~P~~~GG~g~~~~~~~~v~eel~~~ 81 (387)
T 2d29_A 5 FEEGAEER-QVLGPFREFLKAEVAPGAAERDRTGAFPW--DLVRKLAEFGVFGALVPEAYGGAGLSTRLFARMVEAIAYY 81 (387)
T ss_dssp TSCCHHHH-HHHHHHHHHHHHHTGGGHHHHHHHCCCCH--HHHHHHHTTTGGGSSSCGGGTCCCCCHHHHHHHHHHHHHH
T ss_pred CCCCHHHH-HHHHHHHHHHHHhcchhHHHHhhcCCCCH--HHHHHHHHCCCCCCCCChhhCCCCCCHHHHHHHHHHHHhh
Confidence 46789999 99999999999999888888888888999 9999999999999999999999999999999999999999
Q ss_pred cCcchhhhhhhhHHHHHHHHhcCCHHHHHHHhHHHhcCCceEEEEeeCCCCCCCCCCceEEEEEeCCeEEEeeEeecccC
Q 023999 109 SGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTN 188 (274)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~G~~~~~~a~te~~~g~d~~~~~~~a~~~~~g~~l~G~k~~vs~ 188 (274)
++++++.+..|...+...|..+|+++||++|++++++|+.++++++|||.+|+|+..++|++++++|||+|||+|.|+||
T Consensus 82 ~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~g~~~~~~a~tEp~~Gsd~~~~~t~A~~~~~g~~lnG~K~~~s~ 161 (387)
T 2d29_A 82 DGALALTVASHNSLATGHILLAGSEAQKEAFLPKLASGEALGAWGLTEPGSGSDAAALKTKAEKVEGGWRLNGTKQFITQ 161 (387)
T ss_dssp CHHHHHHHHHHHHTHHHHHHHHCCHHHHHHHHHHHHTSSSCEEEECCBTTBSSSGGGCCCEEEEETTEEEEEEEEEEEET
T ss_pred ChHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhCCCceEEEEeCCCCCCCCHhhCceEEEEeCCEEEEEeEEeccCC
Confidence 99988766666335667888999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCEEEEEEEeCCCC----CCCCeEEEEEeCCCCCeEEeccCcccCCCCCceeeEEeceeeeCCCCcccCCCcccccc
Q 023999 189 GPVAQTLVVYAKTDIKA----GSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGCNSF 264 (274)
Q Consensus 189 ~~~a~~~lv~a~~~~~~----~~~~~~~~lv~~~~~gv~~~~~~~~~Gl~~~~~~~v~f~~v~Vp~~~llg~~g~g~~~~ 264 (274)
+..||+++|+++.+++. +.+++++|+||++.|||++.++|+++|++++++++|.|+||+||+++++|.+++|+.+.
T Consensus 162 ~~~Ad~~~v~a~~~~~~~~~~~~~g~~~flV~~~~pGv~v~~~~~~~g~~~~~~~~v~f~~v~Vp~~~~lg~~~~g~~~~ 241 (387)
T 2d29_A 162 GSVAGVYVVMARTDPPPSPERKHQGISAFAFFRPERGLKVGRKEEKLGLTASDTAQLILEDLFVPEEALLGERGKGFYDV 241 (387)
T ss_dssp TTTCSEEEEEEECSCCSCGGGTTTTEEEEEEECCSSSEEECCCCCCSSCTTSCEEEEEEEEEEEEGGGEESSTTBHHHHH
T ss_pred CCcCCEEEEEEEeCCccccCCCCCCeEEEEEeCCCCCeeccCcccccCCCCCCeeEEEEeeEEECHHHcCCCCCccHHHH
Confidence 99999999999986432 44578999999999999998899999999999999999999999999999999888765
Q ss_pred cC
Q 023999 265 GE 266 (274)
Q Consensus 265 ~~ 266 (274)
+.
T Consensus 242 ~~ 243 (387)
T 2d29_A 242 LR 243 (387)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 3
>3p4t_A Putative acyl-COA dehydrogenase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; HET: FAO; 1.70A {Mycobacterium smegmatis} PDB: 3oib_A*
Probab=100.00 E-value=1.8e-44 Score=329.43 Aligned_cols=234 Identities=29% Similarity=0.502 Sum_probs=217.3
Q ss_pred CCCCHHHHHHHHHHHHHHHHhhcCcchhchhccCCCCCcHHHHHHHHhcCCcCCCCCccCCCCCCCHHHHHHHHHHHHhh
Q 023999 29 SLLFDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAMEEISRA 108 (274)
Q Consensus 29 ~~~s~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~~l~vPe~~GG~g~~~~~~~~v~e~lg~~ 108 (274)
..++++++ ++++.+++|+.+.+.+.+.+.++.+.+|. ++|+.|.+.||+++.+|++|||.|+++.+.+.++|+++++
T Consensus 24 ~~~~~e~~-~l~~~~r~~~~~~~~~~~~~~d~~~~~~~--~~~~~l~~~Gl~~l~~P~e~GG~g~~~~~~~~v~eel~~~ 100 (403)
T 3p4t_A 24 IWTTAERE-ALRKTVRAFAEREVLPHAHEWERAGEIPR--ELHRKAAELGLLGAGFPEDAGGSGGDGADPVVICEEMHYA 100 (403)
T ss_dssp TTSSHHHH-HHHHHHHHHHHHHTTTTHHHHHHHTSCCH--HHHHHHHHTTCTTBTSCGGGTCCBCCTHHHHHHHHHHHHT
T ss_pred CCCCHHHH-HHHHHHHHHHHHhCchhHHHHhhcCCCCH--HHHHHHHHCCCCcCCCChhhCCCCCCHHHHHHHHHHHHHh
Confidence 35688999 99999999999999999888898899999 9999999999999999999999999999999999999999
Q ss_pred cCcc-hhhhhhhhHHHHHHHHhcCCHHHHHHHhHHHhcCCceEEEEeeCCCCCCCCCCceEEEEEeCCeEEEeeEeeccc
Q 023999 109 SGSV-GLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCT 187 (274)
Q Consensus 109 ~~~~-~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~G~~~~~~a~te~~~g~d~~~~~~~a~~~~~g~~l~G~k~~vs 187 (274)
++++ ++.+..|...+...+..+|+++||++|++++++|+.++++++|||++|+|+..++|++++++|||+|||+|.|+|
T Consensus 101 ~~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~G~~~~~~a~tEp~~Gsd~~~~~t~A~~~~~g~~lnG~K~~vs 180 (403)
T 3p4t_A 101 GSPGGVYASLFTCGIAVPHMIASGDQRLIDTYVRPTLRGEKIGALAITEPGGGSDVGHLRTRADLDGDHYVINGAKTYIT 180 (403)
T ss_dssp TCCHHHHHHHSTHHHHSHHHHHHTCHHHHHHTHHHHHTTSSCEEEECCBTTBSSCGGGCCCEEEEETTEEEEEEEEEEEE
T ss_pred CCchhhhHHHhhhhhHHHHHHHhCCHHHHHHHHHHHhCCCeEEEEEecCCCCCCCcccceEEEEEeCCEEEEEEEEEEec
Confidence 9998 776666654667788899999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCEEEEEEEeCCCCCCCCeEEEEEeCCCCCeEEeccCcccCCCCCceeeEEeceeeeCCCCcccCCCcccccccC
Q 023999 188 NGPVAQTLVVYAKTDIKAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGCNSFGE 266 (274)
Q Consensus 188 ~~~~a~~~lv~a~~~~~~~~~~~~~~lv~~~~~gv~~~~~~~~~Gl~~~~~~~v~f~~v~Vp~~~llg~~g~g~~~~~~ 266 (274)
|+..||+++|+++.+++ +.+++++|+||+++|||++.++|+++|++++++++|.|+||+||++++||.+++|+.+++.
T Consensus 181 ~a~~Ad~~~v~a~~~~~-~~~g~~~flV~~~~pGv~v~~~~~~~G~~~~~~~~v~fddv~Vp~~~~lg~~~~g~~~~~~ 258 (403)
T 3p4t_A 181 SGVRADYVVTAARTGGP-GAGGVSLIVVDKGTPGFEVTRKLDKMGWRSSDTAELSYTDVRVPVANLVGSENTGFAQIAA 258 (403)
T ss_dssp TTTTCSEEEEEEECSSS-SGGGEEEEEEETTCTTEEEEEECCBSSCTTSCEEEEEEEEEEEEGGGEESSTTCHHHHHHH
T ss_pred CCcccCEEEEEEEeCCC-CCCceEEEEEeCCCCCeEecCCCCcccCCCCCeeEEEEcceEecHHHcCCCCCchHHHHHH
Confidence 99999999999998654 4567899999999999999999999999999999999999999999999999998876543
No 4
>2vig_A Short-chain specific acyl-COA dehydrogenase,; fatty acid metabolism, FAD, polymorphism, flavoprotein, mitochondrion, disease mutation; HET: FAD COS; 1.9A {Homo sapiens} PDB: 1jqi_A*
Probab=100.00 E-value=1.6e-44 Score=328.54 Aligned_cols=234 Identities=36% Similarity=0.620 Sum_probs=214.6
Q ss_pred CCCCHHHHHHHHHHHHHHHHhhcCcchhchhccCCCCCcHHHHHHHHhcCCcCCCCCccCCCCCCCHHHHHHHHHHHHhh
Q 023999 29 SLLFDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAMEEISRA 108 (274)
Q Consensus 29 ~~~s~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~~l~vPe~~GG~g~~~~~~~~v~e~lg~~ 108 (274)
..++++++ ++++.+++|+.+.+.+.+.+.|+.+.+|. ++|+.+.+.||+++.+|++|||.|+++.+.+.++|+++++
T Consensus 4 ~~~~~~~~-~l~~~~r~~~~~~~~~~~~~~d~~~~~~~--~~~~~l~~~Gl~~~~~P~~~GG~g~~~~~~~~v~eel~~~ 80 (391)
T 2vig_A 4 VELPETHQ-MLLQTCRDFAEKELFPIAAQVDKEHLFPA--AQVKKMGGLGLLAMDVPEELGGAGLDYLAYAIAMEEISRG 80 (391)
T ss_dssp --CCHHHH-HHHHHHHHHHHHHTTTTHHHHHHHTCCCH--HHHHHHHHHTTTSTTSCGGGTSCCCCHHHHHHHHHHHHHH
T ss_pred CCCCHHHH-HHHHHHHHHHHHhCcccHHHHHhcCCCCH--HHHHHHHHCCCCCCCCCHhhCCCCCCHHHHHHHHHHHHhh
Confidence 46789999 99999999999999988888888889999 9999999999999999999999999999999999999999
Q ss_pred cCcchhhhhhhhHHHHHHHHhcCCHHHHHHHhHHHhcCCceEEEEeeCCCCCCCCCCceEEEEEeCCeEEEeeEeecccC
Q 023999 109 SGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTN 188 (274)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~G~~~~~~a~te~~~g~d~~~~~~~a~~~~~g~~l~G~k~~vs~ 188 (274)
++++++.+..|...+...|..+|+++||++|++++++|+.++++++|||++|+|+..++|+|++++|||+|||+|.|+||
T Consensus 81 ~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~g~~~~~~a~tEp~~Gsd~~~~~t~A~~~~~g~~lnG~K~~~s~ 160 (391)
T 2vig_A 81 CASTGVIMSVNNSLYLGPILKFGSKEQKQAWVTPFTSGDKIGCFALSEPGNGSDAGAASTTARAEGDSWVLNGTKAWITN 160 (391)
T ss_dssp CHHHHHHHHHHHHTTHHHHHHHCCHHHHHHHTGGGSSSSCCEEEECCBTTBSSSGGGCCCEEEEETTEEEEEEEEEEEET
T ss_pred ccHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhCCCceEEEEecCCCCCCCcccceeEEEEeCCEEEEeeEEEeecC
Confidence 99888776666324567788999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCEEEEEEEeCCCCCCCCeEEEEEeCCCCCeEEeccCcccCCCCCceeeEEeceeeeCCCCcccCCCccccccc
Q 023999 189 GPVAQTLVVYAKTDIKAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGCNSFG 265 (274)
Q Consensus 189 ~~~a~~~lv~a~~~~~~~~~~~~~~lv~~~~~gv~~~~~~~~~Gl~~~~~~~v~f~~v~Vp~~~llg~~g~g~~~~~ 265 (274)
+..||+++|+++.+++++.+++++|+||++.|||++.++|+++|++++++++|.|+||+||++++||.+++|+.+.+
T Consensus 161 ~~~Ad~~~v~a~~~~~~~~~g~~~flV~~~~pGv~v~~~~~~~g~r~~~~~~v~fd~v~Vp~~~~lg~~g~g~~~~~ 237 (391)
T 2vig_A 161 AWEASAAVVFASTDRALQNKSISAFLVPMPTPGLTLGKKEDKLGIRGSSTANLIFEDCRIPKDSILGEPGMGFKIAM 237 (391)
T ss_dssp TTTCSEEEEEEECCSSSTTSCEEEEEEESSCTTEEECCCCCBSSCTTSCEEEEEEEEEEEEGGGEESSTTBHHHHHH
T ss_pred CCcCCEEEEEEEeCCCCCCCceEEEEEeCCCCCeEecCccccccCCCCCeeEEEECcEEECHHHcCCCCCchHHHHH
Confidence 99999999999976543455789999999999999999999999999999999999999999999999999887654
No 5
>3r7k_A Probable acyl COA dehydrogenase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; HET: FDA; 2.50A {Mycobacterium abscessus}
Probab=100.00 E-value=1.6e-44 Score=329.67 Aligned_cols=235 Identities=28% Similarity=0.479 Sum_probs=217.2
Q ss_pred CCCCHHHHHHHHHHHHHHHHhhcCcchhchhccCCCCCcHHHHHHHHhcCCcCCCCCccCCCCCCCHHHHHHHHHHHHhh
Q 023999 29 SLLFDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAMEEISRA 108 (274)
Q Consensus 29 ~~~s~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~~l~vPe~~GG~g~~~~~~~~v~e~lg~~ 108 (274)
..++++++ ++++.+++|+.+.+.+...+.++.+.+|. ++|+.|.+.||+++.+|++|||.|+++.+.+.++|+++++
T Consensus 27 ~~~~~e~~-~l~~~~r~~~~~~~~~~~~~~d~~~~~~~--~~~~~l~~~Gl~~l~~P~e~GG~g~~~~~~~~v~eela~~ 103 (403)
T 3r7k_A 27 AWTTPERR-ALSQMARSFVEREIAPKLAEWEHVGEIPR--DLHLNAAEVGLLGIGFPEEVGGSGGNAIDSALVTEAILAA 103 (403)
T ss_dssp GGGCHHHH-HHHHHHHHHHHHHTTTTHHHHHHHTSCCT--HHHHHHHHHTCTTBTSCGGGTCCBCCHHHHHHHHHHHHHT
T ss_pred CCCCHHHH-HHHHHHHHHHHHhCChhHHHHHhcCCCCH--HHHHHHHhCCCCcCCCChhhCCCCCCHHHHHHHHHHHHhc
Confidence 45789999 99999999999999999888888899999 9999999999999999999999999999999999999998
Q ss_pred -cCcchhhhhhhhHHHHHHHHhcCCHHHHHHHhHHHhcCCceEEEEeeCCCCCCCCCCceEEEEEeCCeEEEeeEeeccc
Q 023999 109 -SGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCT 187 (274)
Q Consensus 109 -~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~G~~~~~~a~te~~~g~d~~~~~~~a~~~~~g~~l~G~k~~vs 187 (274)
++++++.+..+...+...|..+|+++||++|++++++|+.+++++++||++|+|+..++|++++++|||+|||+|.|++
T Consensus 104 ~~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~G~~~~~~a~tEp~~Gsd~~~~~t~A~~~~~g~~lnG~K~~vs 183 (403)
T 3r7k_A 104 GGSTGVCAALFTHGIALPHIAANGSDALIERYVRPTLAGKMIGSLGVTEPGAGSDVANLRTRAVREGDTYVVNGAKTFIT 183 (403)
T ss_dssp TCCHHHHHHHCTHHHHSHHHHHHCCHHHHHHHHHHHHTTSCCEEEECCBTTBSSCGGGCCCEEEECSSEEEEEEEEEEEE
T ss_pred CCchHHHHHHHHhhHHHHHHHHhCCHHHHHHHHHHHhCCCeeEEEEecCCCCCCChhhceEEEEEECCEEEEEEEEEccc
Confidence 8887766654444677889999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCEEEEEEEeCCCCCCCCeEEEEEeCCCCCeEEeccCcccCCCCCceeeEEeceeeeCCCCcccCCCcccccccCC
Q 023999 188 NGPVAQTLVVYAKTDIKAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGCNSFGEP 267 (274)
Q Consensus 188 ~~~~a~~~lv~a~~~~~~~~~~~~~~lv~~~~~gv~~~~~~~~~Gl~~~~~~~v~f~~v~Vp~~~llg~~g~g~~~~~~~ 267 (274)
|+..||+++|+++.+++ +.+++.+|+||+++|||++.++|+++|++++++++|.|+||+||++++||.+++|+.+++..
T Consensus 184 ~a~~Ad~~~v~a~~~~~-~~~g~~~flV~~~~pGv~v~~~~~~~G~~~~~~~~v~fd~v~Vp~~~~lg~~~~g~~~~~~~ 262 (403)
T 3r7k_A 184 SGVRADFVTTAVRTGGP-GYGGVSLLVIDKNSPGFEVSRRLDKMGWRCSDTAELSFVDVRVPADNLVGAENSGFLQIMQQ 262 (403)
T ss_dssp TTTTCSEEEEEEECSSS-SGGGEEEEEEETTCTTEEEEEECCBSSCTTSCEEEEEEEEEEEEGGGEESSTTCHHHHHHHT
T ss_pred CCccCCEEEEEEEcCCC-CCCceEEEEEeCCCCCeEecCcccccCCCCCCceEEEEeeEEECHHHcCCCCCchHHHHHHH
Confidence 99999999999998654 45578999999999999999999999999999999999999999999999999998766543
No 6
>1ukw_A Acyl-COA dehydrogenase; oxidoreductase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: FAD; 2.40A {Thermus thermophilus} SCOP: a.29.3.1 e.6.1.1
Probab=100.00 E-value=1.7e-44 Score=327.06 Aligned_cols=233 Identities=35% Similarity=0.551 Sum_probs=215.5
Q ss_pred CCCHHHHHHHHHHHHHHHHhhcCcchhchhccCCCCCcHHHHHHHHhcCCcCCCCCccCCCCCCCHHHHHHHHHHHHhhc
Q 023999 30 LLFDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAMEEISRAS 109 (274)
Q Consensus 30 ~~s~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~~l~vPe~~GG~g~~~~~~~~v~e~lg~~~ 109 (274)
.++++++ ++++.+++|+.+.+.+.+.+.|+.+.+|. ++|+.+.+.||+++.+|++|||.|+++.+.+.++|++++++
T Consensus 4 ~~~~~~~-~l~~~~~~~~~~~~~~~~~~~d~~~~~~~--~~~~~l~~~Gl~~~~~P~~~GG~g~~~~~~~~~~eel~~~~ 80 (379)
T 1ukw_A 4 SLTEEQR-QLQALARRFAKEVILPVAQEYDEKEEVPW--PVIEKLHEVGLLNAIIPEEYGGMGLKMLDEVIVGEELAYAC 80 (379)
T ss_dssp CCCHHHH-HHHHHHHHHHHHTTGGGHHHHHHHTCCCH--HHHHHHHHTTCTTTTSCGGGTSCCCCHHHHHHHHHHHHHHC
T ss_pred CCCHHHH-HHHHHHHHHHHHhCchhHHHHhhcCCCCH--HHHHHHHHCCCCCcCCChhhCCCCCCHHHHHHHHHHHHHhC
Confidence 5789999 99999999999999888878888888999 99999999999999999999999999999999999999999
Q ss_pred CcchhhhhhhhHHHHHHHHhcCCHHHHHHHhHHHhcCCceEEEEeeCCCCCCCCCCceEEEEEeCCeEEEeeEeecccCC
Q 023999 110 GSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNG 189 (274)
Q Consensus 110 ~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~G~~~~~~a~te~~~g~d~~~~~~~a~~~~~g~~l~G~k~~vs~~ 189 (274)
+++++.+..|. .+...|..+|+++||++|++++++|++++++++|||++|+|+..++|++++++|||+|||+|.|+||+
T Consensus 81 ~~~~~~~~~~~-~~~~~l~~~g~~~q~~~~l~~~~~g~~~~~~a~tEp~~Gsd~~~~~t~A~~~~~g~~lnG~K~~~s~~ 159 (379)
T 1ukw_A 81 MGIYTIPMASD-LGITPVLLAGTEEQKERFLRPLTEKPALAAFALSEPGNGSDAAALKTRAIRQGDHYVLNGTKMWISNG 159 (379)
T ss_dssp HHHHHHHHHHH-HHHHHHHHHCCHHHHHHHHGGGTSSSCEEEEECCBTTBSSCGGGCCCEEEEETTEEEEEEEEEEEETT
T ss_pred chHHHHHHHHH-HHHHHHHHhCCHHHHHHHHHHHhCCCceEEEEecCCCCCcChhhCeEEEEEeCCEEEEEEEEecccCC
Confidence 99887776664 67778889999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCEEEEEEEeCCCCCCCCeEEEEEeCCCCCeEEeccCcccCCCCCceeeEEeceeeeCCCCcccCCCcccccccC
Q 023999 190 PVAQTLVVYAKTDIKAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGCNSFGE 266 (274)
Q Consensus 190 ~~a~~~lv~a~~~~~~~~~~~~~~lv~~~~~gv~~~~~~~~~Gl~~~~~~~v~f~~v~Vp~~~llg~~g~g~~~~~~ 266 (274)
..||+++|+++.+++++.+++++|+||++.|||++.+.|+++|++++++++|.|+||+||++++||.++.|+.+.+.
T Consensus 160 ~~Ad~~~v~a~~~~~~~~~g~~~flV~~~~~Gv~v~~~~~~~G~~~~~~~~v~fd~v~Vp~~~~lg~~~~g~~~~~~ 236 (379)
T 1ukw_A 160 GEAEWVVVFATVNPELRHKGVVALVVERGTPGFKAIKIHGKMGQRASGTYELVFEDVKVPVENRLGEEGEGFKIAMQ 236 (379)
T ss_dssp TTEEEEEEEEESCGGGGGGGEEEEEEETTCTTEEEEECCCCSSCTTSCEEEEEEEEEEEEGGGEESCTTCHHHHHHH
T ss_pred CcCCEEEEEEEcCCCCCCCceEEEEEeCCCCCeEecCccccccCCCCCeeEEEEeeEEecHHhcCCCCCchHHHHHH
Confidence 99999999999764434457899999999999999999999999999999999999999999999999988876543
No 7
>3nf4_A Acyl-COA dehydrogenase; seattle structural genomics center for infectious disease, S FAD, FADH, tuberculosis, oxidoredu; HET: FAD; 2.35A {Mycobacterium thermoresistibile}
Probab=100.00 E-value=4.8e-44 Score=324.89 Aligned_cols=233 Identities=30% Similarity=0.588 Sum_probs=217.2
Q ss_pred CCCCHHHHHHHHHHHHHHHHhhcCcchhchhccCCCCCcHHHHHHHHhcCCcCCCCCccCCCCCCCHHHHHHHHHHHHhh
Q 023999 29 SLLFDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAMEEISRA 108 (274)
Q Consensus 29 ~~~s~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~~l~vPe~~GG~g~~~~~~~~v~e~lg~~ 108 (274)
..++++++ ++++.+++|+.+.+.+.+.+.++.+.+|. ++|+.|++.||+++.+|++|||.|+++.+++.++|+++++
T Consensus 14 ~~~~~~~~-~l~~~~r~~~~~~~~~~~~~~d~~~~~~~--~~~~~l~~~G~~~~~~P~~~GG~g~~~~~~~~v~eel~~~ 90 (387)
T 3nf4_A 14 LLPSQEAA-ELIELTREIADKVLDPIVDRHEKDETYPE--GVFEQLGAAGLLSLPQPEEWGGGGQPYEVYLQVLEEIAAR 90 (387)
T ss_dssp CCSSHHHH-HHHHHHHHHHHHHTTTTHHHHHHHTCCCT--THHHHHHTTTTTSTTSCGGGTCCCCCHHHHHHHHHHHHTT
T ss_pred ccCCHHHH-HHHHHHHHHHHHhCCccHHHHhhhCCCCH--HHHHHHHHCCCCCCCCCHhhCCCCCCHHHHHHHHHHHHHh
Confidence 45789999 99999999999999999888899999999 9999999999999999999999999999999999999999
Q ss_pred cCcchhhhhhhhHHHHHHHHhcCCHHHHHHHhHHHhcCCceEEEEeeCCCCCCCCCCceEEEEEeCCeEEEeeEeecccC
Q 023999 109 SGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTN 188 (274)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~G~~~~~~a~te~~~g~d~~~~~~~a~~~~~g~~l~G~k~~vs~ 188 (274)
++++++.+..|. .+...+..+++++||++|++++++|+.++++++|||++|+|+..++|+|++++|||+|||+|.|+||
T Consensus 91 ~~~~~~~~~~~~-~~~~~l~~~g~~~q~~~~l~~~~~g~~~~~~a~tEp~~gsd~~~~~t~A~~~~~g~~lnG~K~~~s~ 169 (387)
T 3nf4_A 91 WASVAVAVSVHS-LSSHPLLVFGTEEQKKRWLPGMLSGEQIGAYSLSEPQAGSDAAALRCAATPTDGGYVINGSKSWITH 169 (387)
T ss_dssp CHHHHHHHHHHH-HHTHHHHHHSCHHHHHHHHHHHTTSSCCEEEECCBTTBSSCGGGCCCEEEEETTEEEEEEEEEEEET
T ss_pred CchHHHHHHHHH-HHHHHHHHhCCHHHHHHHHHHHhCCCeeEEEEEcCCCCCCChhhCEEEEEEeCCEEEEEeEEecccC
Confidence 999988777776 6777888999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCEEEEEEEeCCCCCCCCeEEEEEeCCCCCeEEeccCcccCCCCCceeeEEeceeeeCCCCcccCCCcccccccCC
Q 023999 189 GPVAQTLVVYAKTDIKAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGCNSFGEP 267 (274)
Q Consensus 189 ~~~a~~~lv~a~~~~~~~~~~~~~~lv~~~~~gv~~~~~~~~~Gl~~~~~~~v~f~~v~Vp~~~llg~~g~g~~~~~~~ 267 (274)
+..||+++|+++.+ ++.+++.+|+||+++|||++.+.|+++|+++++++++.|+||+||+++++|.+++|+.+.+..
T Consensus 170 ~~~Ad~~~v~a~~~--~~~~g~~~flV~~~~pGv~~~~~~~~~G~~~~~~~~v~fd~v~Vp~~~~lg~~~~g~~~~~~~ 246 (387)
T 3nf4_A 170 GGKADFYTLFARTG--EGSRGVSCFLVPADQPGLSFGKPEEKMGLHAVPTTSAFYDNARIDADRRIGEEGQGLQIAFSA 246 (387)
T ss_dssp TTTCSEEEEEEECC----CCCEEEEEEETTCTTEEECCCCCBSSCCSSCEEEEEEEEEEEEGGGEESSTTCHHHHHHHT
T ss_pred CcccCEEEEEEEeC--CCCCceEEEEEECCCCCeEecCcccccccCCCCeeEEEEeeEEecHHHcCCCCCchHHHHHHH
Confidence 99999999999976 245578999999999999999999999999999999999999999999999999998776543
No 8
>1buc_A Butyryl-COA dehydrogenase; acyl-COA dehydrogenase short-chain acyl-COA dehydrogenase, flavoprotein, oxidoreductase; HET: CAA FAD; 2.50A {Megasphaera elsdenii} SCOP: a.29.3.1 e.6.1.1
Probab=100.00 E-value=3.1e-44 Score=325.68 Aligned_cols=235 Identities=37% Similarity=0.623 Sum_probs=216.7
Q ss_pred CCCCHHHHHHHHHHHHHHHHhhcCcchhchhccCCCCCcHHHHHHHHhcCCcCCCCCccCCCCC---CCHHHHHHHHHHH
Q 023999 29 SLLFDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEYGGLG---LGYLYHCIAMEEI 105 (274)
Q Consensus 29 ~~~s~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~~l~vPe~~GG~g---~~~~~~~~v~e~l 105 (274)
..++++++ ++++.+++|+.+.+.+.+.+.|+.+.+|. ++|++|.+.||+++.+|++|||.| +++.+.+.++|++
T Consensus 3 ~~~~~~~~-~l~~~~~~~~~~~~~~~~~~~d~~~~~~~--~~~~~l~~~Gl~~~~~P~~~GG~g~~~~~~~~~~~v~eel 79 (383)
T 1buc_A 3 FNLTDIQQ-DFLKLAHDFGEKKLAPTVTERDHKGIYDK--ELIDELLSLGITGAYFEEKYGGSGDDGGDVLSYILAVEEL 79 (383)
T ss_dssp CCCCHHHH-HHHHHHHHHHHHTTTTTHHHHHHHTCCCH--HHHHHHHTTSGGGTTSCGGGTCGGGGTCCHHHHHHHHHHH
T ss_pred CCCCHHHH-HHHHHHHHHHHHhCchhHHHHhhcCCCCH--HHHHHHHHCCCCCCCCChhhCCCCCCCCCHHHHHHHHHHH
Confidence 35789999 99999999999999998888888889999 999999999999999999999999 9999999999999
Q ss_pred HhhcCcchhhhhhhhHHHHHHHHhcCCHHHHHHHhHHHhcCCceEEEEeeCCCCCCCCCCceEEEEEe-CCeEEEeeEee
Q 023999 106 SRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRV-DGGYIINGNKM 184 (274)
Q Consensus 106 g~~~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~G~~~~~~a~te~~~g~d~~~~~~~a~~~-~~g~~l~G~k~ 184 (274)
+++++++++.+..|...+...+..+|+++||++|++++++|+.++++++|||++|+|+..++|+|+++ +|||+|||+|.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~g~~~~~~a~tEp~~Gsd~~~~~t~A~~~~~~g~~lnG~K~ 159 (383)
T 1buc_A 80 AKYDAGVAITLSATVSLCANPIWQFGTEAQKEKFLVPLVEGTKLGAFGLTEPNAGTDASGQQTIATKNDDGTYTLNGSKI 159 (383)
T ss_dssp HHHCHHHHHHHHHHHHHTHHHHHHHCCHHHHHHTHHHHHHTSSCEEEECCBTTBSSCGGGCCCEEEECTTSCEEEEEEEE
T ss_pred HhhChHHHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHHhCCCeeEEEEeCCCCCCCChhhCEeEEEEcCCCEEEEEEEEe
Confidence 99999988777666435677888999999999999999999999999999999999999999999999 99999999999
Q ss_pred cccCCCCCCEEEEEEEeCCCCCCCCeEEEEEeCCCCCeEEeccCcccCCCCCceeeEEeceeeeCCCCcccCCCcccccc
Q 023999 185 WCTNGPVAQTLVVYAKTDIKAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGCNSF 264 (274)
Q Consensus 185 ~vs~~~~a~~~lv~a~~~~~~~~~~~~~~lv~~~~~gv~~~~~~~~~Gl~~~~~~~v~f~~v~Vp~~~llg~~g~g~~~~ 264 (274)
|+||+..||+++|+++.+++.+.+++++|+||++.|||++.++|+++|++++++++|.|+||+||+++++|.+++|+.+.
T Consensus 160 ~~s~~~~Ad~~~v~a~~~~~~~~~g~~~flV~~~~~Gv~v~~~~~~~g~~~~~~~~v~f~~v~Vp~~~~lg~~g~g~~~~ 239 (383)
T 1buc_A 160 FITNGGAADIYIVFAMTDKSKGNHGITAFILEDGTPGFTYGKKEDKMGIHTSQTMELVFQDVKVPAENMLGEEGKGFKIA 239 (383)
T ss_dssp EEETTTTCSEEEEEEESCSSSSTTSEEEEEEETTCTTEEEEEECCCSSCTTSCEEEEEEEEEEECGGGEESCTTBHHHHH
T ss_pred ccCCCCcCCEEEEEEEeCCCCCCCceEEEEEECCCCCeEecCccccccccCCceeEEEEccEEeCHHHcCCCCCchHHHH
Confidence 99999999999999998654455679999999999999998899999999999999999999999999999999888765
Q ss_pred cC
Q 023999 265 GE 266 (274)
Q Consensus 265 ~~ 266 (274)
+.
T Consensus 240 ~~ 241 (383)
T 1buc_A 240 MM 241 (383)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 9
>2jif_A Short/branched chain specific acyl-COA dehydrogen; mitochondrion, oxidoreductase, transit peptide, fatty acid metabolism, FAD, flavoprotein; HET: FAD COS; 2.0A {Homo sapiens}
Probab=100.00 E-value=3e-44 Score=328.06 Aligned_cols=235 Identities=34% Similarity=0.601 Sum_probs=214.9
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhhcCcchhchhccCCCCCcHHHHHHHHhcCCcCCCCCccCCCCCCCHHHHHHHHHHHHh
Q 023999 28 TSLLFDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAMEEISR 107 (274)
Q Consensus 28 ~~~~s~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~~l~vPe~~GG~g~~~~~~~~v~e~lg~ 107 (274)
...++++++ ++++.+++|+++.+.|...+.|+.+.+|. ++|+.|.+.||+++.+|++|||.|+++.+.+.++|++++
T Consensus 26 ~~~~~~e~~-~l~~~~r~~~~~~~~p~~~~~d~~~~~~~--~~~~~l~e~Gl~~l~~P~e~GG~g~~~~~~~~v~eel~~ 102 (404)
T 2jif_A 26 LQTFTDEEM-MIKSSVKKFAQEQIAPLVSTMDENSKMEK--SVIQGLFQQGLMGIEVDPEYGGTGASFLSTVLVIEELAK 102 (404)
T ss_dssp TTCCCHHHH-HHHHHHHHHHHHHTGGGHHHHHHHTCCCH--HHHHHHHHTTTTSSSSCGGGTCCCCCHHHHHHHHHHHHT
T ss_pred cCCCCHHHH-HHHHHHHHHHHHhCcccHHHHhhcCCCCH--HHHHHHHHCCCCccCCchhhCCCCCCHHHHHHHHHHHHh
Confidence 356899999 99999999999999988778888888999 999999999999999999999999999999999999999
Q ss_pred hcCcchhhhhhhhHHHHHHHHhcCCHHHHHHHhHHHhcCCceEEEEeeCCCCCCCCCCceEEEEEeCCeEEEeeEeeccc
Q 023999 108 ASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCT 187 (274)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~G~~~~~~a~te~~~g~d~~~~~~~a~~~~~g~~l~G~k~~vs 187 (274)
+++++++.+..|...+..+|..+|+++||++|+|++++|. ++++++|||++|+|...++|+|++++|||+|||+|.|+|
T Consensus 103 ~~~~~~~~~~~~~~~~~~~l~~~g~~~qk~~~l~~~~~g~-~~~~a~tEp~~Gsd~~~~~t~A~~~g~g~vlnG~K~~is 181 (404)
T 2jif_A 103 VDASVAVFCEIQNTLINTLIRKHGTEEQKATYLPQLTTEK-VGSFCLSEAGAGSDSFALKTRADKEGDYYVLNGSKMWIS 181 (404)
T ss_dssp TCHHHHHHHHHHHHTHHHHHHHHCCHHHHHHHHHHHHHTC-CEEEECCBTTBSSSGGGCCCEEEEETTEEEEEEEEEEEE
T ss_pred cCcHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhCCC-cceEEecCCCCCCChhhceeEEEEeCCEEEEEeEEEeec
Confidence 9999887776665455677889999999999999999986 789999999999999999999999999999999999999
Q ss_pred CCCCCCEEEEEEEeCCCCCCCCeEEEEEeCCCCCeEEeccCcccCCCCCceeeEEeceeeeCCCCcccCCCcccccccC
Q 023999 188 NGPVAQTLVVYAKTDIKAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGCNSFGE 266 (274)
Q Consensus 188 ~~~~a~~~lv~a~~~~~~~~~~~~~~lv~~~~~gv~~~~~~~~~Gl~~~~~~~v~f~~v~Vp~~~llg~~g~g~~~~~~ 266 (274)
|+..||+++|+|+++++++.+++++|+||++.|||++.+.|+++|++++++++|.|+||+||++++||.+++|+.+.+.
T Consensus 182 ~a~~Ad~~~v~ar~~~~~~~~g~~~flV~~~~pGv~v~~~~~~~G~~~~~~~~v~fd~v~Vp~~~~lg~~g~g~~~~~~ 260 (404)
T 2jif_A 182 SAEHAGLFLVMANVDPTIGYKGITSFLVDRDTPGLHIGKPENKLGLRASSTCPLTFENVKVPEANILGQIGHGYKYAIG 260 (404)
T ss_dssp TTTTCSEEEEEEESCGGGGGGGEEEEEEETTCTTEEECCCCCBSSCTTSCEEEEEEEEEEEEGGGEESSTTCHHHHHHH
T ss_pred CCcccCEEEEEEEeCCCCCCCceEEEEEecCCCCeEeccCcccccCCCCceEEEEEccEEECHHHcCCCCCchHHHHHH
Confidence 9999999999999764434457899999999999999999999999999999999999999999999999998876543
No 10
>2pg0_A Acyl-COA dehydrogenase; GK1316, geobacillus kaustophilus HTA structural genomics, PSI, protein structure initiative; HET: FAD; 1.80A {Geobacillus kaustophilus}
Probab=100.00 E-value=5.4e-44 Score=324.38 Aligned_cols=234 Identities=32% Similarity=0.603 Sum_probs=213.8
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhhcCcchhchhccCCCCCcHHHHHHHHhcCCcCCCCCccCCCCCCCHHHHHHHHHHHHh
Q 023999 28 TSLLFDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAMEEISR 107 (274)
Q Consensus 28 ~~~~s~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~~l~vPe~~GG~g~~~~~~~~v~e~lg~ 107 (274)
+..++++++ ++++++++|+.+.+.+.+.+.|+.+.+|. ++|+.+.+.||+++.+|++|||.|+++.+.+.++|++++
T Consensus 7 ~~~~~~~~~-~l~~~~~~~~~~~~~~~~~~~d~~~~~~~--~~~~~l~~~Gl~~~~~P~~~GG~g~~~~~~~~v~eela~ 83 (385)
T 2pg0_A 7 ARYLREEHH-MFRAAFRKFLEKEAYPHYNDWEKRGIIPR--SFWAKMGENGFLCPWVDEKYGGLNADFAYSVVINEELEK 83 (385)
T ss_dssp CTTCCHHHH-HHHHHHHHHHHHHTTTTHHHHHHHTSCCH--HHHHHHHHTTCSSTTSCGGGTCCCCCHHHHHHHHHHHHH
T ss_pred CCCCCHHHH-HHHHHHHHHHHHhCchhHHHHHhcCCCCH--HHHHHHHHCCCCCcCCChhhCCCCCCHHHHHHHHHHHHh
Confidence 456899999 99999999999999998888888889998 999999999999999999999999999999999999999
Q ss_pred hc-CcchhhhhhhhHHHHHHHHhcCCHHHHHHHhHHHhcCCceEEEEeeCCCCCCCCCCceEEEEEeCCeEEEeeEeecc
Q 023999 108 AS-GSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWC 186 (274)
Q Consensus 108 ~~-~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~G~~~~~~a~te~~~g~d~~~~~~~a~~~~~g~~l~G~k~~v 186 (274)
++ +++++.+ |...+...+..+++++||++|++++++|++++++++|||++|+|+..++|++++++|||+|||+|.|+
T Consensus 84 ~~~~~~~~~~--~~~~~~~~l~~~g~~~q~~~~l~~~~~g~~~~~~a~tEp~~Gsd~~~~~t~A~~~~~g~~lnG~K~~~ 161 (385)
T 2pg0_A 84 VGSSLVGIGL--HNDIVTPYIASYGTEEQKQKWLPKCVTGELITAIAMTEPGAGSDLANISTTAVKDGDYYIVNGQKTFI 161 (385)
T ss_dssp HCGGGHHHHH--HHHTTHHHHHHHCCHHHHHHHHHHHHHTSSCEEEECCBTTBSSCGGGCCCEEEEETTEEEEEEEEEEE
T ss_pred hCCchHHHHH--HhhHHHHHHHHhCCHHHHHHHHHHHhCCCeEEEEEeCCCCCCcCHhhCeEEEEEcCCEEEEEeEEecc
Confidence 99 8877654 43345677888999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCEEEEEEEeCCC--CCCCCeEEEEEeCCCCCeEEeccCcccCCCCCceeeEEeceeeeCCCCcccCCCcccccc
Q 023999 187 TNGPVAQTLVVYAKTDIK--AGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGCNSF 264 (274)
Q Consensus 187 s~~~~a~~~lv~a~~~~~--~~~~~~~~~lv~~~~~gv~~~~~~~~~Gl~~~~~~~v~f~~v~Vp~~~llg~~g~g~~~~ 264 (274)
||+..||+++|+++.+++ ++.+++++|+||++.|||++.++|+++|++++++++|.|+||+||++++||.+++|+.+.
T Consensus 162 s~~~~Ad~~~v~a~~~~~~~~~~~g~~~flV~~~~pGv~v~~~~~~~g~~~~~~~~v~fd~v~Vp~~~~lg~~g~g~~~~ 241 (385)
T 2pg0_A 162 TNGIHADLIVVACKTDPQAKPPHRGISLLVVERDTPGFTRGRKLEKVGLHAQDTAELFFQDAKVPAYNLLGEEGKGFYYL 241 (385)
T ss_dssp TTTTTCSEEEEEEESCTTCSSGGGGEEEEEEETTCTTEEECCCCCBSSCTTSCCEEEEEEEEEEEGGGEESCTTCHHHHH
T ss_pred cCCcccCEEEEEEEeCCccCCCCCceEEEEEeCCCCCeEecCCccccccCCCceEEEEEcceEEcHHHcCCCCCchHHHH
Confidence 999999999999997643 234478999999999999998889999999999999999999999999999999988765
Q ss_pred cC
Q 023999 265 GE 266 (274)
Q Consensus 265 ~~ 266 (274)
+.
T Consensus 242 ~~ 243 (385)
T 2pg0_A 242 ME 243 (385)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 11
>1ivh_A Isovaleryl-COA dehydrogenase; oxidoreductase, acyl-COA dehydrogenase, flavoprotein, isovaleric acidemia; HET: FAD COS; 2.60A {Homo sapiens} SCOP: a.29.3.1 e.6.1.1
Probab=100.00 E-value=5.8e-44 Score=325.12 Aligned_cols=237 Identities=63% Similarity=1.054 Sum_probs=216.2
Q ss_pred CCCCHHHHHHHHHHHHHHHHhhcCcchhchhccCCCCCcHHHHHHHHhcCCcCCCCCccCCCCCCCHHHHHHHHHHHHhh
Q 023999 29 SLLFDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAMEEISRA 108 (274)
Q Consensus 29 ~~~s~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~~l~vPe~~GG~g~~~~~~~~v~e~lg~~ 108 (274)
..++++++ ++++.+++|+.+.+.+.+.+.|+.+.+|...++|+.+.+.||+++.+|++|||.|+++.+.+.++|+++++
T Consensus 11 ~~~~~e~~-~l~~~~r~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~~Gl~~l~~P~e~GG~g~~~~~~~~v~eel~~~ 89 (394)
T 1ivh_A 11 NGLSEEQR-QLRQTMAKFLQEHLAPKAQEIDRSNEFKNLREFWKQLGNLGVLGITAPVQYGGSGLGYLEHVLVMEEISRA 89 (394)
T ss_dssp GTCCHHHH-HHHHHHHHHHHHHTTTTHHHHHHHTCCTTHHHHHHHHHHHTCTTTTSCGGGTCCCCCHHHHHHHHHHHHHH
T ss_pred cCCCHHHH-HHHHHHHHHHHHhCChhHHHHHhcCCCCchHHHHHHHHHCCCCCCCCCcccCCCCCCHHHHHHHHHHHHhh
Confidence 46889999 99999999999999988777888888876558999999999999999999999999999999999999999
Q ss_pred cCcchhhhhhhhHHHHHHHHhcCCHHHHHHHhHHHhcCCceEEEEeeCCCCCCCCCCceEEEEEeCCeEEEeeEeecccC
Q 023999 109 SGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTN 188 (274)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~G~~~~~~a~te~~~g~d~~~~~~~a~~~~~g~~l~G~k~~vs~ 188 (274)
++++++.+..|...+...|..+|+++||++|++++++|++++++++|||++|+|+..++|++++++|||+|||+|.|+||
T Consensus 90 ~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~G~~~~~~a~tEp~~gsd~~~~~t~A~~~~~g~~lnG~K~~vs~ 169 (394)
T 1ivh_A 90 SGAVGLSYGAHSNLCINQLVRNGNEAQKEKYLPKLISGEYIGALAMSEPNAGSDVVSMKLKAEKKGNHYILNGNKFWITN 169 (394)
T ss_dssp CHHHHHHHHHHHTTTHHHHHHHCCHHHHHHHHHHHHHTSSCEEEECCBTTBSSSGGGCCCEEEECSSEEEEEEEEEEEET
T ss_pred chhHHHHHHHhhHHHHHHHHHhCCHHHHHHHHHHHhCCCeEEEEEecCCCCCcCcccceEEEEEcCCEEEEEeEEEeeCC
Confidence 99988877766435667888999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCEEEEEEEeCCC--CCCCCeEEEEEeCCCCCeEEeccCcccCCCCCceeeEEeceeeeCCCCcccCCCcccccccC
Q 023999 189 GPVAQTLVVYAKTDIK--AGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGCNSFGE 266 (274)
Q Consensus 189 ~~~a~~~lv~a~~~~~--~~~~~~~~~lv~~~~~gv~~~~~~~~~Gl~~~~~~~v~f~~v~Vp~~~llg~~g~g~~~~~~ 266 (274)
+..||+++|+++.+++ ++.+++++|+||++.|||++.+.|+++|++++++++|.|+||+||+++++|.+++|+.+.+.
T Consensus 170 ~~~Ad~~~v~ar~~~~~~~~~~g~~~flV~~~~pGv~v~~~~~~~G~~~~~~~~v~fd~v~Vp~~~~lg~~~~g~~~~~~ 249 (394)
T 1ivh_A 170 GPDADVLIVYAKTDLAAVPASRGITAFIVEKGMPGFSTSKKLDKLGMRGSNTCELIFEDCKIPAANILGHENKGVYVLMS 249 (394)
T ss_dssp GGGCSEEEEEEESCTTCSSGGGGEEEEEEETTCTTEEECCCCCBSSCTTSCEEEEEEEEEEEEGGGEESCTTCHHHHHHH
T ss_pred CCcCCEEEEEEEeCCcccCCCCCeEEEEEeCCCCCeEeccccccccCCCCCeeEEEECcEEEcHHHcCCCCCchHHHHHH
Confidence 9999999999997643 23357889999999999999999999999999999999999999999999999999876543
No 12
>2dvl_A Acyl-COA dehydrogenase; structural genomics, NPPSFA, national project on protein STR and functional analyses; HET: FAD; 2.50A {Thermus thermophilus}
Probab=100.00 E-value=1e-43 Score=321.16 Aligned_cols=228 Identities=38% Similarity=0.651 Sum_probs=211.4
Q ss_pred CCCHHHHHHHHHHHHHHHHhhcCcchhchhccCCCCCcHHHHHHHHhcCCcCCCCCccCCCCCCCHHHHHHHHHHHHhhc
Q 023999 30 LLFDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAMEEISRAS 109 (274)
Q Consensus 30 ~~s~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~~l~vPe~~GG~g~~~~~~~~v~e~lg~~~ 109 (274)
.++++++ ++++.+++|+.+.+.+.+.+.|+.+.+|. ++|+.|.+.||+++.+|++|||.|+++.+.+.++|++++++
T Consensus 2 ~~~~e~~-~l~~~~r~~~~~~~~~~~~~~d~~~~~~~--~~~~~l~~~Gl~~~~~P~~~GG~g~~~~~~~~v~eel~~~~ 78 (372)
T 2dvl_A 2 TLTQEQR-LVLDAVRRVAREVLYPLAPEYDRKAEYPW--PQLKALAELGLLGMTTPEEWGGVGLDSVTWALALEELAAAD 78 (372)
T ss_dssp -CCHHHH-HHHHHHHHHHHHTHHHHHHHHHHTTCCCH--HHHHHHHHTTGGGTTSCGGGTSCCCCHHHHHHHHHHHHHHC
T ss_pred CCCHHHH-HHHHHHHHHHHHhCchhHHHHHhhCCCCH--HHHHHHHhCCCCCCCCChhhCCCCCCHHHHHHHHHHHHhcC
Confidence 4788999 99999999999888888777888888999 99999999999999999999999999999999999999999
Q ss_pred CcchhhhhhhhHHHHHHHHhcCCHHHHHHHhHHHhcCCceEEEEeeCCCCCCCCCCceEEEEEeCCeEEEeeEeecccCC
Q 023999 110 GSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNG 189 (274)
Q Consensus 110 ~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~G~~~~~~a~te~~~g~d~~~~~~~a~~~~~g~~l~G~k~~vs~~ 189 (274)
+++++.+..|...+...|..+|+++||++|++++++|+.++++++|||++|+|+..++|++++++|||+|||+|.|+||+
T Consensus 79 ~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~g~~~~~~a~tEp~~Gsd~~~~~t~A~~~~~g~~lnG~K~~~s~~ 158 (372)
T 2dvl_A 79 PSVAVIVSVTSGLPQYMLLRFGSEAQKRRYLVPLARGEWIGAFCLTEPQAGSDAKSLRAEARRVKGGFVLNGVKSWITSA 158 (372)
T ss_dssp HHHHHHHHHHTSHHHHHHHHHCCHHHHHHTHHHHHTTSSCEEEECCCSSCSSCGGGCCCEEEEETTEEEEEEEEEEEETT
T ss_pred cHHHHHHHHhhhHHHHHHHHhCCHHHHHHHHHHHhCCCeEEEEEecCCCCCCChhhCeeEEEEECCEEEEEeEEEeecCC
Confidence 99887777663356778889999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCEEEEEEEeCCCCCCCCeEEEEEeCCCCCeEEeccCcccCCCCCceeeEEeceeeeCCCCcccCCCccccccc
Q 023999 190 PVAQTLVVYAKTDIKAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGCNSFG 265 (274)
Q Consensus 190 ~~a~~~lv~a~~~~~~~~~~~~~~lv~~~~~gv~~~~~~~~~Gl~~~~~~~v~f~~v~Vp~~~llg~~g~g~~~~~ 265 (274)
..||+++|+++.++ ++.+|+||++.|||++.+.|+++|++++++++|.|+||+||+++++|.+++|+.+.+
T Consensus 159 ~~Ad~~~v~a~~~~-----g~~~flV~~~~pGv~v~~~~~~~G~~~~~~~~v~fd~v~Vp~~~~lg~~~~g~~~~~ 229 (372)
T 2dvl_A 159 GHAHLYVVMARTEK-----GISAFLVEKGTPGLSFGRPEEKMGLHAAHTAEVRLEEVFVPEENLLGEEGRGLAYAL 229 (372)
T ss_dssp TTCSEEEEEEEETT-----EEEEEEEETTCTTEEECCCCCCSSCTTSCEEEEEEEEEEEEGGGEESSTTCHHHHHH
T ss_pred CcCCEEEEEEEeCC-----CcEEEEEeCCCCCeEecCcccccccCcCCeeEEEECcEEeCHHHcCCCCCchHHHHH
Confidence 99999999999753 688999999999999999999999999999999999999999999999998886544
No 13
>1egd_A Medium chain acyl-COA dehydrogenase; flavoprotein, electron transfer; HET: FAD; 2.40A {Homo sapiens} SCOP: a.29.3.1 e.6.1.1 PDB: 1egc_A* 1ege_A* 1t9g_A* 2a1t_A* 1udy_A* 3mdd_A* 3mde_A*
Probab=100.00 E-value=1.2e-43 Score=323.23 Aligned_cols=234 Identities=35% Similarity=0.547 Sum_probs=214.2
Q ss_pred CCCCHHHHHHHHHHHHHHHHhhcCcchhchhccCCCCCcHHHHHHHHhcCCcCCCCCccCCCCCCCHHHHHHHHHHHHhh
Q 023999 29 SLLFDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAMEEISRA 108 (274)
Q Consensus 29 ~~~s~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~~l~vPe~~GG~g~~~~~~~~v~e~lg~~ 108 (274)
..++++++ ++++.+++|+.+.+.+.+.+.|+.+.+|. ++|+.|.+.||+++.+|++|||.|+++.+.+.++|+++++
T Consensus 14 ~~~~~~~~-~l~~~~r~~~~~~~~~~~~~~d~~~~~~~--~~~~~l~~~Gl~~~~~P~~~GG~g~~~~~~~~v~eel~~~ 90 (396)
T 1egd_A 14 FEFTEQQK-EFQATARKFAREEIIPVAAEYDKTGEYPV--PLIRRAWELGLMNTHIPENCGGLGLGTFDACLISEELAYG 90 (396)
T ss_dssp CCCCHHHH-HHHHHHHHHHHHHTHHHHHHHHHHCCCCH--HHHHHHHHHTCSSTTSCGGGTSCCCCHHHHHHHHHHHHHH
T ss_pred CCCCHHHH-HHHHHHHHHHHHhCchhHHHHHhhCCCCH--HHHHHHHHCCCCCCCCchhhCCCCCCHHHHHHHHHHHHhh
Confidence 46889999 99999999999988888878888888998 9999999999999999999999999999999999999999
Q ss_pred cCcchhhhhhhhHHHHHHHHhcCCHHHHHHHhHHHhcCCceEEEEeeCCCCCCCCCCceEEEEEeCCeEEEeeEeecccC
Q 023999 109 SGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTN 188 (274)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~G~~~~~~a~te~~~g~d~~~~~~~a~~~~~g~~l~G~k~~vs~ 188 (274)
++++++.+ .|...+...|..+|+++||++|++++++|+.++++++|||++|+|+..++|+|++++|||+|||+|.|+||
T Consensus 91 ~~~~~~~~-~~~~~~~~~l~~~g~~~q~~~~l~~~~~g~~~~~~a~tEp~~Gsd~~~~~t~A~~~~~g~~lnG~K~~~s~ 169 (396)
T 1egd_A 91 CTGVQTAI-EGNSLGQMPIIIAGNDQQKKKYLGRMTEEPLMCAYCVTEPGAGSDVAGIKTKAEKKGDEYIINGQKMWITN 169 (396)
T ss_dssp CHHHHHHH-HHHHHHTHHHHHHCCHHHHHHHHHHHHHSCCCEEEECCBTTBSSSGGGCCCEEEECSSEEEEEEEEEEEET
T ss_pred CccHHHHH-HhhhHHHHHHHHhCCHHHHHHHHHHHhCCCceEEEEecCCCCCcchhhCeeEEEEeCCEEEEEEEEEcccC
Confidence 99988766 55445566688899999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCEEEEEEEeCCCCCC---CCeEEEEEeCCCCCeEEeccCcccCCCCCceeeEEeceeeeCCCCcccCCCccccccc
Q 023999 189 GPVAQTLVVYAKTDIKAGS---KGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGCNSFG 265 (274)
Q Consensus 189 ~~~a~~~lv~a~~~~~~~~---~~~~~~lv~~~~~gv~~~~~~~~~Gl~~~~~~~v~f~~v~Vp~~~llg~~g~g~~~~~ 265 (274)
+..||+++|+++.+++.+. +++++|+||++.|||++.++|+++|++++++++|.|+||+||++++||.++.|+.+.+
T Consensus 170 ~~~Ad~~~v~a~~~~~~~~~~~~g~~~flV~~~~pGv~v~~~~~~~G~~~~~~~~v~fd~v~Vp~~~~lg~~~~g~~~~~ 249 (396)
T 1egd_A 170 GGKANWYFLLARSDPDPKAPANKAFTGFIVEADTPGIQIGRKELNMGQRCSDTRGIVFEDVKVPKENVLIGDGAGFKVAM 249 (396)
T ss_dssp TTTCSEEEEEEECCCCTTSCGGGTEEEEEEETTCTTEEECCCCCBSSCTTSCEEEEEEEEEEEEGGGBSSSTTBHHHHHH
T ss_pred CcccCEEEEEEEeCCCCCCCCCCCeEEEEEeCCCCCeeeCCccccccccCCCeeEEEECcEEECHHHcCCCCCccHHHHH
Confidence 9999999999998654333 5788999999999999989999999999999999999999999999999998887654
Q ss_pred C
Q 023999 266 E 266 (274)
Q Consensus 266 ~ 266 (274)
.
T Consensus 250 ~ 250 (396)
T 1egd_A 250 G 250 (396)
T ss_dssp H
T ss_pred H
Confidence 3
No 14
>1rx0_A Acyl-COA dehydrogenase family member 8, mitochondrial; flavoprotein, coenzyme A, oxidoreductase; HET: FAD 2MC; 1.77A {Homo sapiens} SCOP: a.29.3.1 e.6.1.1
Probab=100.00 E-value=1.8e-43 Score=321.75 Aligned_cols=234 Identities=28% Similarity=0.492 Sum_probs=215.6
Q ss_pred CCCCHHHHHHHHHHHHHHHHhhcCcchhchhccCCCCCcHHHHHHHHhcCCcCCCCCccCCCCCCCHHHHHHHHHHHHhh
Q 023999 29 SLLFDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAMEEISRA 108 (274)
Q Consensus 29 ~~~s~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~~l~vPe~~GG~g~~~~~~~~v~e~lg~~ 108 (274)
..++++++ ++++.+++|+.+.+.+.+.+.|+.+.+|. ++|+.+.+.||+++.+|++|||.|+++.+.+.++|+++++
T Consensus 17 ~~~~~e~~-~~~~~~r~~~~~~~~~~~~~~d~~~~~p~--~~~~~l~~~Gl~~l~~P~e~GG~g~~~~~~~~v~eela~~ 93 (393)
T 1rx0_A 17 MGLNEEQK-EFQKVAFDFAAREMAPNMAEWDQKELFPV--DVMRKAAQLGFGGVYIQTDVGGSGLSRLDTSVIFEALATG 93 (393)
T ss_dssp TTCCHHHH-HHHHHHHHHHHHHTHHHHHHHHHHTCCCH--HHHHHHHHTTCSSTTSCGGGTCCCCCHHHHHHHHHHHHTT
T ss_pred CCCCHHHH-HHHHHHHHHHHHhCCccHHHHhhcCCCCH--HHHHHHHhCCCCcCCCChhhCCCCCCHHHHHHHHHHHHHh
Confidence 45889999 99999999999999888878888888999 9999999999999999999999999999999999999999
Q ss_pred cCcchhhhhhhhHHHHHHHHhcCCHHHHHHHhHHHhcCCceEEEEeeCCCCCCCCCCceEEEEEeCCeEEEeeEeecccC
Q 023999 109 SGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTN 188 (274)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~G~~~~~~a~te~~~g~d~~~~~~~a~~~~~g~~l~G~k~~vs~ 188 (274)
++++++.+..|. .+...+..+|+++||++|++++++|+.++++++|||++|+|+..+.|+|++++|||+|||+|.|+||
T Consensus 94 ~~~~~~~~~~~~-~~~~~l~~~g~~~qk~~~l~~~~~G~~~~~~a~tEp~~gsd~~~~~t~A~~~~~g~~lnG~K~~is~ 172 (393)
T 1rx0_A 94 CTSTTAYISIHN-MCAWMIDSFGNEEQRHKFCPPLCTMEKFASYCLTEPGSGSDAASLLTSAKKQGDHYILNGSKAFISG 172 (393)
T ss_dssp CHHHHHHHHHHH-HHHHHHHHHSCHHHHHHHHHHHHTTSSCEEEECCBTTBSSSGGGCCCEEEEETTEEEEEEEEEEEET
T ss_pred CcchhHHHHHhH-HHHHHHHHHCCHHHHHHHHHHHhCCCceEEEEecCCCCCcCcccceeEEEEcCCEEEEEeEEEeecC
Confidence 998887776665 6677888999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCEEEEEEEeCCCCCCCCeEEEEEeCCCCCeEEeccCcccCCCCCceeeEEeceeeeCCCCcccCCCcccccccCC
Q 023999 189 GPVAQTLVVYAKTDIKAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGCNSFGEP 267 (274)
Q Consensus 189 ~~~a~~~lv~a~~~~~~~~~~~~~~lv~~~~~gv~~~~~~~~~Gl~~~~~~~v~f~~v~Vp~~~llg~~g~g~~~~~~~ 267 (274)
+..||+++|+++.++ ++.+++++|+||++.|||++.+.++++|++++++++|.|+||+||++++||.+++|+.+.+..
T Consensus 173 a~~Ad~~~v~a~~~~-~~~~g~~~flV~~~~pGv~v~~~~~~~g~~~~~~~~v~fd~v~Vp~~~~lg~~g~g~~~~~~~ 250 (393)
T 1rx0_A 173 AGESDIYVVMCRTGG-PGPKGISCIVVEKGTPGLSFGKKEKKVGWNSQPTRAVIFEDCAVPVANRIGSEGQGFLIAVRG 250 (393)
T ss_dssp TTTCSEEEEEEESSS-SSGGGEEEEEEETTCTTEEECCCCCBSSCTTSCEEEEEEEEEEEEGGGEESSTTCHHHHHHHH
T ss_pred CccCCEEEEEEEcCC-CCCCceEEEEEeCCCCCeEecCcccccccCCCCceEEEEcCeEeCHHHcCCCCCchHHHHHHH
Confidence 999999999999753 344578999999999999999899999999999999999999999999999999888765543
No 15
>3ii9_A Glutaryl-COA dehydrogenase; slipchip, microfluidics, screening, optimization, protein crystallization, structural genomics; HET: PGE PG4; 1.74A {Burkholderia pseudomallei 1710B} PDB: 3eon_A* 3eom_A* 3gqt_A* 3gnc_A* 3d6b_A
Probab=100.00 E-value=4.6e-44 Score=326.00 Aligned_cols=233 Identities=37% Similarity=0.630 Sum_probs=207.3
Q ss_pred CCCCHHHHHHHHHHHHHHHHhhcCcchhchhccCCCCCcHHHHHHHHhcCCcCCCCCccCCCCCCCHHHHHHHHHHHHhh
Q 023999 29 SLLFDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAMEEISRA 108 (274)
Q Consensus 29 ~~~s~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~~l~vPe~~GG~g~~~~~~~~v~e~lg~~ 108 (274)
+.++++++ ++++++++|+.+.+.+.+.+.++.+.+|. ++|+.|.+.||+++.+|++|||.|+++.+.+.++|+++++
T Consensus 17 ~~~~~e~~-~l~~~~r~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~Gl~~l~~P~~~GG~g~~~~~~~~v~eel~~~ 93 (396)
T 3ii9_A 17 QQLADDER-MVRDAAHAYAQGKLAPRVTEAFRHETTDA--AIFREMGEIGLLGPTIPEQYGGPGLDYVSYGLIAREVERV 93 (396)
T ss_dssp GGSCHHHH-HHHHHHHHHCCCCCHHHHHHHHHHTCCCT--HHHHHHHHTTCSSTTSCGGGTSCCCCHHHHHHHHHHHHTT
T ss_pred CCCCHHHH-HHHHHHHHHHHHhCChhHHHHHhhCCCCH--HHHHHHHhCCCCCCCCChhhCCCCCCHHHHHHHHHHHHHh
Confidence 46899999 99999999998988888888888899999 9999999999999999999999999999999999999999
Q ss_pred cCcchhhhhhhhHHHHHHHHhcCCHHHHHHHhHHHhcCCceEEEEeeCCCCCCCCCCceEEEEEeCCeEEEeeEeecccC
Q 023999 109 SGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTN 188 (274)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~G~~~~~~a~te~~~g~d~~~~~~~a~~~~~g~~l~G~k~~vs~ 188 (274)
++++++.+..|...+...|..+|+++||++|++++++|+.++++++|||++|+|+..++|+|++++|||+|||+|.|+||
T Consensus 94 ~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~G~~~~~~a~tEp~~Gsd~~~~~t~A~~~~~g~~lnG~K~~vs~ 173 (396)
T 3ii9_A 94 DSGYRSMMSVQSSLVMVPIFEFGSDAQKEKYLPKLATGEWIGCFGLTEPNHGSDPGSMVTRARKVPGGYSLSGSKMWITN 173 (396)
T ss_dssp CHHHHHHHHCCCCCCCHHHHHHSCHHHHHHHHHHHHHTSSCEEEECCCCC------CCCCEEEEETTEEEEEEEEEEEET
T ss_pred ChhHHHHHHhhhhhHHHHHHHhCCHHHHHHHHHHHhCCCeeeEEEecCCCCCCChhhCeeEEEEeCCEEEEEEEEEeECC
Confidence 99888777666434556788999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCEEEEEEEeCCCCCCCCeEEEEEeCCCCCeEEeccCcccCCCCCceeeEEeceeeeCCCCcccCCCcccccccC
Q 023999 189 GPVAQTLVVYAKTDIKAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGCNSFGE 266 (274)
Q Consensus 189 ~~~a~~~lv~a~~~~~~~~~~~~~~lv~~~~~gv~~~~~~~~~Gl~~~~~~~v~f~~v~Vp~~~llg~~g~g~~~~~~ 266 (274)
+..||+++|+++.++ ++.+++.+|+||+++|||++.+.|+++|++++++++|.|+||+||++++++. ++|+.+...
T Consensus 174 a~~Ad~~~v~a~~~~-~g~~g~~~flV~~~~pGv~v~~~~~~~G~~~~~~~~v~fddv~Vp~~~~l~~-~~g~~~~~~ 249 (396)
T 3ii9_A 174 SPIADVFVVWAKLDE-DGRDEIRGFILEKGCKGLSAPAIHGKVGLRASITGEIVLDEAFVPEENILPH-VKGLRGPFT 249 (396)
T ss_dssp GGGCSEEEEEEEEEE-TTEEEEEEEEEETTCTTEECCBCCCCSSCTTSCEEEEEEEEEEEEGGGBCTT-CCSTHHHHH
T ss_pred CccCCEEEEEEEecC-CCCCceEEEEEecCCCCeEeccccccccCCcCCeeEEEEccEEECHHHccCC-ChHHHHHHH
Confidence 999999999999862 2344688999999999999999999999999999999999999999999976 778765543
No 16
>3sf6_A Glutaryl-COA dehydrogenase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; HET: FDA; 1.70A {Mycobacterium smegmatis}
Probab=100.00 E-value=7.4e-43 Score=318.74 Aligned_cols=227 Identities=29% Similarity=0.530 Sum_probs=212.0
Q ss_pred CCCCHHHHHHHHHHHHHHHHhhcCcchhchhccCCCC-CcHHHHHHHHhcCCcCCCCCccCCCCCCCHHHHHHHHHHHHh
Q 023999 29 SLLFDDTQLQFKESVGQFARENIAPRAANIDQSNSFP-QDVNLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAMEEISR 107 (274)
Q Consensus 29 ~~~s~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~G~~~l~vPe~~GG~g~~~~~~~~v~e~lg~ 107 (274)
..++++++ ++++++++|+.+.+.+.+.+.++.+.+| . ++|+.|.+.||+++.+ ++|||.|+++.+++.++|++++
T Consensus 28 ~~l~~e~~-~l~~~~r~~~~~~~~~~~~~~~~~~~~p~~--~~~~~l~~~Gl~~l~~-~e~GG~g~~~~~~~~v~eela~ 103 (403)
T 3sf6_A 28 AVLSAEER-EIRDTVRSVVQRRIKPHIASWYEDGELPAR--ELAVELGELGLLGMHL-KGYGCAGMSAVAYGLACLELEA 103 (403)
T ss_dssp GGSCHHHH-HHHHHHHHHHHHHTTTTHHHHHHHTCCCHH--HHHHHHHHTTCSSTTS-CSTTCCCCCHHHHHHHHHHHHH
T ss_pred CCCCHHHH-HHHHHHHHHHHHhcChhHHHHHhcCCCCHH--HHHHHHHHCCCCcccc-hhhCCCCCCHHHHHHHHHHHHH
Confidence 46789999 9999999999999999888888889999 8 9999999999999999 9999999999999999999999
Q ss_pred hcCcchhhhhhhhHHHHHHHHhcCCHHHHHHHhHHHhcCCceEEEEeeCCCCCCCCCCceEEEEEeCCeEEEeeEeeccc
Q 023999 108 ASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCT 187 (274)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~G~~~~~~a~te~~~g~d~~~~~~~a~~~~~g~~l~G~k~~vs 187 (274)
+++++++.+..|...+...+..+|+++||++|++++++|++++++++|||++|+|+..++|+|++++|||+|||+|.|+|
T Consensus 104 ~~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~G~~~~~~a~tEp~~Gsd~~~~~t~A~~~~~g~~lnG~K~~is 183 (403)
T 3sf6_A 104 GDSGIRSLVSVQGSLAMYAIHAFGSDEQKDQWLPDMASGHRIGCFGLTEPDHGSDPAGMRTRATRSGDDWILTGTKMWIT 183 (403)
T ss_dssp HCHHHHHHHHHHHHTHHHHHHHHCCHHHHHHHHHHHHTTSSCEEEECCBTTBSSCGGGCCCEEEEETTEEEEEEEEEEEE
T ss_pred hcccHHHHHHHhhhhHHHHHHHhCCHHHHHHHHHHHhCCCceEEEEEccCCCCCCchhcEEEEEEECCEEEEEEEEEeec
Confidence 99998877766654567788899999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCEEEEEEEeCCCCCCCCeEEEEEeCCCCCeEEeccCcccCCCCCceeeEEeceeeeCCCCcccCCCccccccc
Q 023999 188 NGPVAQTLVVYAKTDIKAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGCNSFG 265 (274)
Q Consensus 188 ~~~~a~~~lv~a~~~~~~~~~~~~~~lv~~~~~gv~~~~~~~~~Gl~~~~~~~v~f~~v~Vp~~~llg~~g~g~~~~~ 265 (274)
|+..||+++|+|+.++ ++.+|+||++.|||++.+.|+++|++++++++|.|+||+||++++||. ++|+.+.+
T Consensus 184 ~a~~Ad~~~v~ar~~~-----g~~~flV~~~~pGv~v~~~~~~~G~r~~~~~~v~fd~v~Vp~~~~lg~-~~g~~~~~ 255 (403)
T 3sf6_A 184 NGSVADVAVVWARTDE-----GIRGFVVPTDTPGFTANTIKSKMSLRASVTSELVLDGVRLPDSARLPG-ATSLGAPL 255 (403)
T ss_dssp TGGGCSEEEEEEEETT-----EEEEEEEETTSTTEEEEECCSCSSCTTSCEEEEEEEEEEEEGGGBCTT-CCSTHHHH
T ss_pred CCcccCEEEEEEEeCC-----ceEEEEEECCCCCeEecCCCCccCCCCCceeEEEEccEEEcHHHccCC-ChhHHHHH
Confidence 9999999999999753 688999999999999999999999999999999999999999999998 88876654
No 17
>3mpi_A Glutaryl-COA dehydrogenase; alpha-beta fold, oxidoreductase; HET: FAD GRA; 2.05A {Desulfococcus multivorans} PDB: 3mpj_A*
Probab=100.00 E-value=1.1e-43 Score=323.59 Aligned_cols=233 Identities=38% Similarity=0.653 Sum_probs=216.0
Q ss_pred CCCCHHHHHHHHHHHHHHHHhhcCcchhchhccCCCC-CcHHHHHHHHhcCCcCCCCCccCCCCCC--CHHHHHHHHHHH
Q 023999 29 SLLFDDTQLQFKESVGQFARENIAPRAANIDQSNSFP-QDVNLWKLMGNFNLHGITAPQEYGGLGL--GYLYHCIAMEEI 105 (274)
Q Consensus 29 ~~~s~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~G~~~l~vPe~~GG~g~--~~~~~~~v~e~l 105 (274)
+.++++|+ ++++++++|+.+.+.+.+.+.|+.+.+| . ++|+.|.+.||+++.+|++|||.|+ ++.+.+.++|++
T Consensus 3 ~~~~~~~~-~l~~~~r~~~~~~~~~~~~~~d~~~~~~~~--~~~~~l~~~Gl~~l~~P~~~GG~g~~~~~~~~~~v~eel 79 (397)
T 3mpi_A 3 FNLSKELQ-MLQKEVRNFVNKKIVPFADQWDNENHFPYE--EAVRPMGELGFFGTVIPEEYGGEGMDQGWLAAMIVTEEI 79 (397)
T ss_dssp CCCCHHHH-HHHHHHHHHHHHHTTTTHHHHHHHTCCCTT--TTHHHHHHTTTTCTTSCGGGTSCCCTTHHHHHHHHHHHH
T ss_pred CCCCHHHH-HHHHHHHHHHHHhCChhHHHHHhcCCCCHH--HHHHHHHHCCCCccCCChhhCCCCCCCCHHHHHHHHHHH
Confidence 46899999 9999999999999999988889889999 8 9999999999999999999999999 999999999999
Q ss_pred HhhcCcchhhhhhhhHHHHH-HHHhcCCHHHHHHHhHHHhcCCceEEEEeeCCCCCCCCCCceEEEEEeCCeEEEeeEee
Q 023999 106 SRASGSVGLSYGAHSNLCIN-QLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKM 184 (274)
Q Consensus 106 g~~~~~~~~~~~~~~~~~~~-~l~~~g~~~q~~~~l~~~~~G~~~~~~a~te~~~g~d~~~~~~~a~~~~~g~~l~G~k~ 184 (274)
+++++++++.+..|. .+.. .+..+++++||++|++++++|++++++++|||.+|+|+..+.|+|++++|||+|||+|.
T Consensus 80 a~~~~~~~~~~~~~~-~~~~~~l~~~g~~~q~~~~l~~~~~g~~~~~~a~tEp~~gsd~~~~~t~A~~~~~g~~lnG~K~ 158 (397)
T 3mpi_A 80 ARGSSALRVQLNMEV-LGCAYTILTYGSEALKKKYVPKLSSAEFLGGFGITEPDAGSDVMAMSSTAEDKGDHWLLNGSKT 158 (397)
T ss_dssp HHHCHHHHHHHHHHT-TTTHHHHHHHSCHHHHHHHHHHHHTTSSCCCEECCBTTBSSCGGGCCCEEEECSSEEEEEEEEE
T ss_pred HhhCchHHHHHHHHH-HhHHHHHHHhCCHHHHHHHHHHHhCCCeEEEEEecCCCCCCCcccCeEEEEEeCCEEEEEEEEE
Confidence 999999888777664 4455 88899999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCCEEEEEEEeCCCCCCCCeEEEEE-eCCCCCeEEeccCcccCCCCCceeeEEeceeeeCCCCcccCCCccccc
Q 023999 185 WCTNGPVAQTLVVYAKTDIKAGSKGITAFII-EKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGCNS 263 (274)
Q Consensus 185 ~vs~~~~a~~~lv~a~~~~~~~~~~~~~~lv-~~~~~gv~~~~~~~~~Gl~~~~~~~v~f~~v~Vp~~~llg~~g~g~~~ 263 (274)
|+||+..||+++|+++.+++++.+++.+|+| |++.|||++ ++|+++|++++++++|.|+||+||+++++|.+++|+.+
T Consensus 159 ~~s~~~~Ad~~~v~a~~~~~~~~~g~~~flV~~~~~~Gv~v-~~~~~~G~~~~~~~~v~fddv~Vp~~~~lg~~~~g~~~ 237 (397)
T 3mpi_A 159 WISNAAQADVLIYYAYTDKAAGSRGLSAFVIEPRNFPGIKT-SNLEKLGSHASPTGELFLDNVKVPKENILGKPGDGARI 237 (397)
T ss_dssp EEETTTTCSSEEEEEESCGGGGGGSEEEEEECTTTSTTEEE-EECCCSSCTTSCEEEEEEEEEEEEGGGEESSTTCHHHH
T ss_pred eeCCCcccCEEEEEEEcCCCCCCCceEEEEEEcCCCCCeEe-ccCccccCcCCceeEEEEeeEEECHHHcCCCCCchHHH
Confidence 9999999999999999866545567899999 999999999 99999999999999999999999999999999999876
Q ss_pred ccC
Q 023999 264 FGE 266 (274)
Q Consensus 264 ~~~ 266 (274)
...
T Consensus 238 ~~~ 240 (397)
T 3mpi_A 238 VFG 240 (397)
T ss_dssp HHH
T ss_pred HHH
Confidence 544
No 18
>3swo_A Glutaryl-COA dehydrogenase; ssgcid, glutaryl-COA dehdrogenase, mycobacerium smegmatis, S genomics; HET: FDA; 1.45A {Mycobacterium smegmatis}
Probab=100.00 E-value=6e-43 Score=318.93 Aligned_cols=228 Identities=31% Similarity=0.528 Sum_probs=211.8
Q ss_pred CCCCHHHHHHHHHHHHHHHHhhcCcchhchhccCCCCCcHHHHHHHHhcCCcCCCCCccCCCCCCCHHHHHHHHHHHHhh
Q 023999 29 SLLFDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAMEEISRA 108 (274)
Q Consensus 29 ~~~s~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~~l~vPe~~GG~g~~~~~~~~v~e~lg~~ 108 (274)
..++++++ ++++.+++|+.+.+.+.+.+.++.+.+|. ++|+.+++.||+++.+ ++|||.|+++.+.+.++|+++++
T Consensus 24 ~~l~~e~~-~l~~~~r~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~Gl~~l~~-~e~GG~g~~~~~~~~v~eel~~~ 99 (399)
T 3swo_A 24 RLLDQDER-DIAATVRQFVDTRLKPNVEGWFESATLPS--ELAKEFGNLGVLGMHL-QGYGCAGTNAVSYGLACMELEAG 99 (399)
T ss_dssp GGSCHHHH-HHHHHHHHHHHHHTHHHHHHHHHHTCCCT--THHHHHHHHTCTTTTS-CSTTCCCCCHHHHHHHHHHHHHH
T ss_pred CCCCHHHH-HHHHHHHHHHHHhCChhHHHHHhhCCCCH--HHHHHHHHCCCCcCCh-hhhCCCCCCHHHHHHHHHHHHHh
Confidence 36789999 99999999999999888888888889999 9999999999999999 99999999999999999999999
Q ss_pred cCcchhhhhhhhHHHHHHHHhcCCHHHHHHHhHHHhcCCceEEEEeeCCCCCCCCCCceEEEEEeCCeEEEeeEeecccC
Q 023999 109 SGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTN 188 (274)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~G~~~~~~a~te~~~g~d~~~~~~~a~~~~~g~~l~G~k~~vs~ 188 (274)
++++++.+..|...+...|..+|+++||++|++++++|+.++++++|||++|+|+..++|+|++++|||+|||+|.|++|
T Consensus 100 ~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~G~~~~~~a~tEp~~Gsd~~~~~t~A~~~~~g~~lnG~K~~vs~ 179 (399)
T 3swo_A 100 DSGFRSFVSVQGSLSMFSIYRYGSEEQKNEWLPRLAAGDAIGCFGLTEPDFGSNPAGMRTRARRDGSDWILNGTKMWITN 179 (399)
T ss_dssp CHHHHHHHHHHTTTHHHHHHHHCCHHHHHHHHHHHHHTSSCEEEECCBTTBSSCGGGCCCEEEEETTEEEEEEEEEEEET
T ss_pred CccHHHHHHHHhhhhhhHHHhcCCHHHHHHHHHHHhCCCeeeEEEecCCCCCCCCccceEEEEEeCCEEEEEEEEEeECC
Confidence 99987776666446677889999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCEEEEEEEeCCCCCCCCeEEEEEeCCCCCeEEeccCcccCCCCCceeeEEeceeeeCCCCcccCCCcccccccC
Q 023999 189 GPVAQTLVVYAKTDIKAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGCNSFGE 266 (274)
Q Consensus 189 ~~~a~~~lv~a~~~~~~~~~~~~~~lv~~~~~gv~~~~~~~~~Gl~~~~~~~v~f~~v~Vp~~~llg~~g~g~~~~~~ 266 (274)
+..||+++|+++.++ ++.+|+||++.|||++.+.|+++|++++++++|.|+||+||+++++|. ++|+.+...
T Consensus 180 a~~Ad~~~v~a~~~~-----g~~~flV~~~~pGv~v~~~~~~~G~r~~~~~~v~fd~v~Vp~~~~lg~-~~g~~~~~~ 251 (399)
T 3swo_A 180 GNLADVATVWAQTDD-----GIRGFLVPTDTPGFTANEIHRKLSLRASVTSELVLDNVRLPASAQLPL-AEGLSAPLS 251 (399)
T ss_dssp TTTCSEEEEEEBCTT-----SCEEEEEETTSTTEEEEECCCBSSCCSSCEEEEEEEEEEECGGGBCTT-CCSTHHHHH
T ss_pred CCccCEEEEEEEeCC-----ceEEEEEeCCCCCeEeecCcCcccCCCCceeEEEEccEEEcHHHcCCC-ChhHHHHHH
Confidence 999999999998752 588999999999999999999999999999999999999999999998 888866543
No 19
>2eba_A Putative glutaryl-COA dehydrogenase; thermus thermophilius, FAD, STRU genomics, NPPSFA; HET: FAD; 2.21A {Thermus thermophilus}
Probab=100.00 E-value=1e-42 Score=315.98 Aligned_cols=230 Identities=30% Similarity=0.506 Sum_probs=208.1
Q ss_pred CCCCHHHHHHHHHHHHHHHHhhcCcchhchhccCCCCCcHHHHHHHHhcCCcCCCCCccCCCCCCCHHHHHHHHHHHHhh
Q 023999 29 SLLFDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAMEEISRA 108 (274)
Q Consensus 29 ~~~s~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~~l~vPe~~GG~g~~~~~~~~v~e~lg~~ 108 (274)
+.++++++ ++++.+++|+.+.+.+...+.++.+.+|. ++|+++.+.||+++.+|++|||.|+++.+.+.++|+++++
T Consensus 9 ~~~~~~~~-~l~~~~r~~~~~~~~~~~~~~d~~~~~~~--~~~~~l~~~Gl~~~~~P~~~GG~g~~~~~~~~v~eela~~ 85 (385)
T 2eba_A 9 DLLTPEEK-EVQKAARRFLEKEALPHIRDWWEEGVFPT--HLIPRFAELGFLGPTLPPEYGGAGVSSAAYGLICYELERV 85 (385)
T ss_dssp GGSCHHHH-HHHHHHHHHHHHHTHHHHHHHHHTTCCCG--GGHHHHHHHTCSSTTSCGGGTCCCCCHHHHHHHHHHHHHH
T ss_pred CCCCHHHH-HHHHHHHHHHHHhCCccHHHHHHhCCCCH--HHHHHHHHCCCcCCCCchhhCCCCCCHHHHHHHHHHHHHh
Confidence 45788999 99999999999999888888888888999 9999999999999999999999999999999999999999
Q ss_pred cCcchhhhhhhhHHHHHHHHhcCCHHHHHHHhHHHhcCCceEEEEeeCCCCCCCC-CCceEEEEEeCCeEEEeeEeeccc
Q 023999 109 SGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDV-VGMKCKADRVDGGYIINGNKMWCT 187 (274)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~G~~~~~~a~te~~~g~d~-~~~~~~a~~~~~g~~l~G~k~~vs 187 (274)
++++++.+..|...+...|..+|+++||++|++++++|++++++++|||++|+|+ ..++|++++++|||+|||+|.|+|
T Consensus 86 ~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~g~~~~~~a~tEp~~Gsd~~~~~~t~A~~~~~g~~lnG~K~~~s 165 (385)
T 2eba_A 86 DSGLRSFVSVQSSLVMYPIYAYGSEEQKREFLPKLARGEMVGCFGLTEPDGGSDPYGNMKTRARREGDTWVLNGTKMWIT 165 (385)
T ss_dssp CHHHHHHHHHHHHTTHHHHHHHSCHHHHHHHHHHHHTTSSCEEEECCCTTCTTSTTTTCCCEEEC--CEEEEEEEEEEEE
T ss_pred CchHHHHHHHHHhHHHHHHHHhCCHHHHHHHHHHHhCCCeEEEEEeCCCCcCCCccccCeeEEEEeCCEEEEEeeeeccC
Confidence 9998877776654456678889999999999999999999999999999999999 899999999999999999999999
Q ss_pred CCCCCCEEEEEEEeCCCCCCCCeEEEEEeCCCCCeEEeccCcccCCCCCceeeEEeceeeeCCCCcccCCCcccccccC
Q 023999 188 NGPVAQTLVVYAKTDIKAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGCNSFGE 266 (274)
Q Consensus 188 ~~~~a~~~lv~a~~~~~~~~~~~~~~lv~~~~~gv~~~~~~~~~Gl~~~~~~~v~f~~v~Vp~~~llg~~g~g~~~~~~ 266 (274)
|+..||+++|+++.++ + + +.+|+||++.|||++.+.|+++|++++++++|.|+||+||+++++ .+++|+.+...
T Consensus 166 ~~~~Ad~~~v~a~~~~--g-~-~~~flV~~~~pGv~v~~~~~~~G~~~~~~~~v~f~~v~Vp~~~~l-~~~~g~~~~~~ 239 (385)
T 2eba_A 166 NGNLAHLAVIWAKDEG--G-E-VLGFLVPTDTPGFQAREVKRKMSLRASVTSELVLEEVRVPESLRL-PKALGLKAPLS 239 (385)
T ss_dssp TTTTCSEEEEEEECC-------EEEEEEETTSTTEEEEECCSBSSSCSSCEEEEEEEEEEEEGGGBC-TTCCSTHHHHH
T ss_pred CCcccCEEEEEEEeCC--C-c-EEEEEEeCCCCCeEecccccccccccCceeEEEEccEEEcHHHcc-CCCchHHHHHH
Confidence 9999999999999752 2 2 889999999999999999999999999999999999999999999 77888765543
No 20
>4hr3_A Putative acyl-COA dehydrogenase; ssgcid, seattle structural genomics center for infectious DI niaid; HET: FAD; 1.80A {Mycobacterium abscessus}
Probab=100.00 E-value=2.7e-42 Score=316.09 Aligned_cols=235 Identities=21% Similarity=0.261 Sum_probs=203.7
Q ss_pred CCCCHHHHHHHHHHHHHHHHhhcCcchhchhccC------------------CCCCcHHHHHHHHhcCCcCCCCCccCCC
Q 023999 29 SLLFDDTQLQFKESVGQFARENIAPRAANIDQSN------------------SFPQDVNLWKLMGNFNLHGITAPQEYGG 90 (274)
Q Consensus 29 ~~~s~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~l~~~G~~~l~vPe~~GG 90 (274)
+.++++++ ++++++++|+.+.+.|...+.++.+ .+|. ++|+.+.+.||+++.+|++|||
T Consensus 7 ~~~~~~~~-~l~~~~r~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~e~G~~~~~~P~~~GG 83 (415)
T 4hr3_A 7 FAPSARAA-ELIAAVREFIDAEVMPVERAVLAHHDELLGARAGTTAELWHVPPELD--SLKAKARAAGLWNLFLPDPELG 83 (415)
T ss_dssp CCCCHHHH-HHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTTCSCSGGGGSCCTHHH--HHHHHHHHTTCSSTTCCCTTTS
T ss_pred CCCCHHHH-HHHHHHHHHHHHhCCccHHHHhhhccccccccccccccccCcchhHH--HHHHHHHhCCCcCcCCCHHHCC
Confidence 46889999 9999999999998877765554332 1345 8999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHhhcCcchhh-hhhhhHHHHHHHHhcCCHHHHHHHhHHHhcCCceEEEEeeCCC-CCCCCCCceE
Q 023999 91 LGLGYLYHCIAMEEISRASGSVGLS-YGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPN-AGSDVVGMKC 168 (274)
Q Consensus 91 ~g~~~~~~~~v~e~lg~~~~~~~~~-~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~G~~~~~~a~te~~-~g~d~~~~~~ 168 (274)
.|+++.+.+.++|++++++.+..+. ...+...+...|..+++++||++|++++++|+.++++++|||+ +|+|+..++|
T Consensus 84 ~g~~~~~~~~v~eel~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~G~~~~~~a~tEp~~~gsd~~~~~t 163 (415)
T 4hr3_A 84 GGLSNSEYAPLAEQMGRSLFAPTVFNCNAPDSGNMEVLHRYGSQEQKEVWLEPLLEGDIRSAFCMTEPDVASSDATNMAA 163 (415)
T ss_dssp CCCCHHHHHHHHHHHTTCSSHHHHTTCCTTHHHHHHHHHHHCCHHHHHHTHHHHHTTSCEEEEECCCTTSCTTSGGGCCC
T ss_pred CCCCHHHHHHHHHHHhcccchHHHHHHhccccchHHHHHHhCCHHHHHHHHHHHhCCCceeEEEEcCCCCCCCchhhCee
Confidence 9999999999999999987543322 2222223346788999999999999999999999999999999 9999999999
Q ss_pred EEEEeCCeEEEeeEeecccCCCC--CCEEEEEEEeCCCC-CCCCeEEEEEeCCCCCeEEeccCcccCCCCCc--eeeEEe
Q 023999 169 KADRVDGGYIINGNKMWCTNGPV--AQTLVVYAKTDIKA-GSKGITAFIIEKGMPGFSTAQKLDKLGMRGSD--TCELVF 243 (274)
Q Consensus 169 ~a~~~~~g~~l~G~k~~vs~~~~--a~~~lv~a~~~~~~-~~~~~~~~lv~~~~~gv~~~~~~~~~Gl~~~~--~~~v~f 243 (274)
+|++++|||+|||+|.|+||+.+ ||+++|+++.+++. +.+++++|+||++.|||++.++|+++|+++++ +++|.|
T Consensus 164 ~A~~~g~g~~lnG~K~~is~a~~~~Ad~~~v~a~~~~~~~~~~g~~~flV~~~~pGv~v~~~~~~~g~r~~~~~~~~v~f 243 (415)
T 4hr3_A 164 TAVVEGDEVVINGRKWWSTGVGHPDCKVIIFMGLTDPNAHRYARHSMVLVPMDTPGITVERMLPTMGFYDEPGGHGVVSF 243 (415)
T ss_dssp EEEEETTEEEEEEEEEEEETTTSTTEEEEEEEEECCTTSCTTSSEEEEEEETTSTTEEEEEECCBTTBCCTTTCEEEEEE
T ss_pred EEEEECCEEEEeeEEeeECCCCCCCCCEEEEEEEeCCCCCCCCceEEEEEEcCCCceEecCCCCccccCCCCCCeeEEEE
Confidence 99999999999999999999966 99999999986542 34579999999999999998999999999987 999999
Q ss_pred ceeeeCCCCcccCCCcccccccC
Q 023999 244 ENCFVPNENVLGQEGKGCNSFGE 266 (274)
Q Consensus 244 ~~v~Vp~~~llg~~g~g~~~~~~ 266 (274)
+||+||++++||.+++|+.+++.
T Consensus 244 ddv~Vp~~~~lg~~~~g~~~~~~ 266 (415)
T 4hr3_A 244 DNVRLPADAFIAGPGKGFEIAQG 266 (415)
T ss_dssp EEEEEEGGGBSSCTTCHHHHHHH
T ss_pred ccEEECHHHcCCCCCchHHHHHH
Confidence 99999999999999999876543
No 21
>1r2j_A Protein FKBI; polyketide synthase, polyketide, acyl-COA dehydrogenase, , aldehyde dehydrogenase, oxidoreductase; HET: FAD; 2.10A {Streptomyces hygroscopicus} SCOP: a.29.3.1 e.6.1.1
Probab=100.00 E-value=4.6e-42 Score=309.75 Aligned_cols=216 Identities=23% Similarity=0.355 Sum_probs=198.7
Q ss_pred HHHHHHHHhhcCcchhchhccCCCCCcHHHHHHHHhcCCcCCCCCccCCCCCCCHHHHHHHHHHHHhhcCcchhhhhhhh
Q 023999 41 ESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAMEEISRASGSVGLSYGAHS 120 (274)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~~l~vPe~~GG~g~~~~~~~~v~e~lg~~~~~~~~~~~~~~ 120 (274)
+++++|+.+.+.+.+.+.|+.+.+|. ++|+.|.+.||+++.+|++|||.|+++.+.+.++|+++++++++++.+..|.
T Consensus 2 ~~~r~~~~~~~~~~~~~~d~~~~~~~--~~~~~l~~~Gl~~~~~P~~~GG~g~~~~~~~~v~eel~~~~~~~~~~~~~~~ 79 (366)
T 1r2j_A 2 PERDALLTDLVGDRAAEWDTSGELPR--DLLVRLGADGLLCAEVAAEHGGLGLGSRENGEFTAHVGSLCSSLRSVMTSQG 79 (366)
T ss_dssp -CCHHHHHHHHSSCHHHHHHHTCCCH--HHHHHHHHTTTTSTTSCGGGTCCCCCHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred hHHHHHHHHhccccHHHHhhcCCCCH--HHHHHHHHCCCCCCCCChhhCCCCCCHHHHHHHHHHHHHHChHHHHHHHHHH
Confidence 56789999999988888888888999 9999999999999999999999999999999999999999999887776664
Q ss_pred HHHHHHHHhcCCHHHHHHHhHHHhcCCceEEEEeeCCCCCCCCCCceEEEEEeCCeEEEeeEeecccCCCCCCEEEEEEE
Q 023999 121 NLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAK 200 (274)
Q Consensus 121 ~~~~~~l~~~g~~~q~~~~l~~~~~G~~~~~~a~te~~~g~d~~~~~~~a~~~~~g~~l~G~k~~vs~~~~a~~~lv~a~ 200 (274)
..+...|. +|+++||++|++++++|+ +.++++|||.+|+|+..++|++++++|||+|||+|.|+||+..||+++|+++
T Consensus 80 ~~~~~~l~-~g~~~q~~~~l~~~~~G~-~~~~a~tEp~~Gsd~~~~~t~A~~~~~g~~lnG~K~~~s~~~~Ad~~~v~a~ 157 (366)
T 1r2j_A 80 MAAWTVQR-LGDAGQRATFLKELTSGK-LAAVGFSERQAGSDLSAMRTRVRLDGDTAVVDGHKVWTTAAAYADHLVVFGL 157 (366)
T ss_dssp HHHHHHHH-HSCHHHHHHHHHHTTCC--CEEEECCBTTBSSCGGGCCCEEEEETTEEEEEEEEEEETTTTTCSEEEEEEB
T ss_pred HHHHHHHH-hCCHHHHHHHHHHHhCCC-eeEEEeCCCCCCCchhhCEeEEEEeCCEEEEEEEEecccCCcccCEEEEEEE
Confidence 35566777 999999999999999999 9999999999999999999999999999999999999999999999999998
Q ss_pred eCCCCCCCCeEEEEEeCCCCCeEEeccCcccCCCCCceeeEEeceeeeCCCCcccCCCcccccc
Q 023999 201 TDIKAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGCNSF 264 (274)
Q Consensus 201 ~~~~~~~~~~~~~lv~~~~~gv~~~~~~~~~Gl~~~~~~~v~f~~v~Vp~~~llg~~g~g~~~~ 264 (274)
.++ + ++++|+||++.|||++.+.|+++|++++++++|.|+||+||+++++|.+++|+.+.
T Consensus 158 ~~~--~--g~~~flV~~~~~Gv~~~~~~~~~G~r~~~~~~v~f~~v~Vp~~~~lg~~~~g~~~~ 217 (366)
T 1r2j_A 158 QED--G--SGAVVVVPADTPGVRVERVPKPSGCRAAGHADLHLDQVRVPAGAVLAGSGASLPML 217 (366)
T ss_dssp CSS--S--CCEEEEEETTSTTEEEEECSSCSSSTTSCCEEEEEEEEEEEGGGBCTTTTSCTTTT
T ss_pred eCC--C--ceEEEEEECCCCCeEecCCcCCccCCCCCeeEEEEeeEEEcHHHcCCCCCccHHHH
Confidence 753 2 68899999999999999999999999999999999999999999999999998766
No 22
>2ix5_A Acyl-coenzyme A oxidase 4, peroxisomal; FAD, ACX4, flavin, peroxisome, glyoxysome, fatty acid metabo lipid metabolism, acyl-COA oxidase; HET: CAA FAD; 2.7A {Arabidopsis thaliana} PDB: 2ix6_A*
Probab=100.00 E-value=7e-42 Score=315.07 Aligned_cols=227 Identities=30% Similarity=0.519 Sum_probs=206.7
Q ss_pred CCCHHHHHHHHHHHHHHHHhhcCcchhchhccCCCCCcHHHHHHHHhcCCcCCCCCccCCCCCCCHHHHHHHHHHHHhhc
Q 023999 30 LLFDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAMEEISRAS 109 (274)
Q Consensus 30 ~~s~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~~l~vPe~~GG~g~~~~~~~~v~e~lg~~~ 109 (274)
.++++++ ++++++++|+++.+.+...+.++.+.+|. ++|+.|.++||+++.+| +|||.|+++.+.+.++|++++++
T Consensus 54 ~l~~e~~-~l~~~~r~f~~~~~~p~~~~~~~~~~~p~--~~~~~l~e~Gl~~l~~p-e~GG~G~~~~~~~~v~eela~~~ 129 (436)
T 2ix5_A 54 LLTPEEQ-AIRKKVRECMEKEVAPIMTEYWEKAEFPF--HITPKLGAMGVAGGSIK-GYGCPGLSITANAIATAEIARVD 129 (436)
T ss_dssp GSCHHHH-HHHHHHHHHHHHHTHHHHHHHHHHTCCCG--GGHHHHHTTTCTTTTCC-STTCCCCCHHHHHHHHHHHHHHC
T ss_pred CCCHHHH-HHHHHHHHHHHhhCChhhHHHHhcCCCCH--HHHHHHHHcCCCcCcCC-CCCCCCCCHHHHHHHHHHHHhhC
Confidence 5789999 99999999999998888777677778999 99999999999999999 99999999999999999999999
Q ss_pred CcchhhhhhhhHHHHHHHHhcCCHHHHHHHhHHHhcCCceEEEEeeCCCCCCCCCCceEEEEEeCCeEEEeeEeecccCC
Q 023999 110 GSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNG 189 (274)
Q Consensus 110 ~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~G~~~~~~a~te~~~g~d~~~~~~~a~~~~~g~~l~G~k~~vs~~ 189 (274)
+++++.+..|..++...|..+|+++||++|++++++|+.++++++|||++|+|...++|+|++++|||+|||+|.|++|+
T Consensus 130 ~~~~~~~~~~~~~~~~~l~~~gt~~qk~~~l~~l~~G~~~~a~a~tEp~~GSd~~~~~t~A~~~gdg~vLnG~K~~is~a 209 (436)
T 2ix5_A 130 ASCSTFILVHSSLGMLTIALCGSEAQKEKYLPSLAQLNTVACWALTEPDNGSDASGLGTTATKVEGGWKINGQKRWIGNS 209 (436)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHSCHHHHHHHHHHHHTTSSCEEEECCBTTBSSCGGGCCCEEEEETTEEEEEEEEEEEETT
T ss_pred ccHHHHHHhHHHHHHHHHHHhCCHHHHHHHHHHHhCCCeeeEEEecCCCCCCCcccceEEEEEeCCEEEEeeeccCCCCC
Confidence 99876666564356677889999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCEEEEEEEeCCCCCCCCeEEEEEeCCCCCeEEeccCcccCCCCCceeeEEeceeeeCCCCcccCCCcccccc
Q 023999 190 PVAQTLVVYAKTDIKAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGCNSF 264 (274)
Q Consensus 190 ~~a~~~lv~a~~~~~~~~~~~~~~lv~~~~~gv~~~~~~~~~Gl~~~~~~~v~f~~v~Vp~~~llg~~g~g~~~~ 264 (274)
..||+++|+|+.+++ .++.+|+||++.|||++.+.|+++|++++++++|.|+||+||+++++|.. +|+..+
T Consensus 210 ~~Ad~~lv~Ar~~~~---~~~~~flV~~~~pGv~v~~~~~~~G~r~~~~~~v~fddv~VP~~~~lg~~-~g~~~~ 280 (436)
T 2ix5_A 210 TFADLLIIFARNTTT---NQINGFIVKKDAPGLKATKIPNKIGLRMVQNGDILLQNVFVPDEDRLPGV-NSFQDT 280 (436)
T ss_dssp TTCSEEEEEEEETTT---SSEEEEEEETTCTTEEEEECCCBSSSTTSCEEEEEEEEEEEEGGGBCTTC-SSHHHH
T ss_pred cccCEEEEEEEECCC---CcEEEEEEECCCCCeEeeccccccCCCcCCceeEEeccEEECHHHcCCcc-ccHHHH
Confidence 999999999997532 36889999999999999999999999999999999999999999999865 455543
No 23
>3owa_A Acyl-COA dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-structure, beta-barrel; HET: MSE FAD 1PE; 1.97A {Bacillus anthracis}
Probab=100.00 E-value=4.3e-42 Score=326.83 Aligned_cols=236 Identities=34% Similarity=0.559 Sum_probs=207.6
Q ss_pred cccCCCCCCCHHHHHHHHHHHHHHHHhhcCcchhchhccC-CCCCcHHHHHHHHhcCCcCCCCCccCCCCCCCHHHHHHH
Q 023999 23 AAFSSTSLLFDDTQLQFKESVGQFARENIAPRAANIDQSN-SFPQDVNLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIA 101 (274)
Q Consensus 23 ~~~~~~~~~s~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~G~~~l~vPe~~GG~g~~~~~~~~v 101 (274)
..+.++..++++|+ ++++.+++|+.+.+.|...+.++.+ .+|. ++|+.+.++||+++.+|++|||.|+++.+.+.+
T Consensus 25 ~~~~~p~~lt~eq~-~l~~~vr~f~~~~~~p~~~~~d~~~~~~~~--~~~~~l~e~Gl~gl~vPee~GG~G~~~~~~~~v 101 (597)
T 3owa_A 25 DQVFTPEDFSSEHK-MIAKTTEDFIVNEVLPELEYLEQHEFDRSV--RLLKEAGELGLLGADVPEEYGGIGLDKVSSALI 101 (597)
T ss_dssp GGCCCGGGCCHHHH-HHHHHHHHHHHHHTGGGHHHHTTTCHHHHH--HHHHHHHHTTTTCTTSCGGGTCCCCCHHHHHHH
T ss_pred hhcCCccCCCHHHH-HHHHHHHHHHHHhCchhHHHHHhcCCcCCH--HHHHHHHHCCCCcCCCChhhCCCCCCHHHHHHH
Confidence 33444567899999 9999999999999988877777654 4667 999999999999999999999999999999999
Q ss_pred HHHHHhhcCcchhhhhhhhHHHHHHHHhcCCHHHHHHHhHHHhcCCceEEEEeeCCCCCCCCCCceEEEEEeC--CeEEE
Q 023999 102 MEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVD--GGYII 179 (274)
Q Consensus 102 ~e~lg~~~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~G~~~~~~a~te~~~g~d~~~~~~~a~~~~--~g~~l 179 (274)
+|++++++.+ +..+..|...+...+..+|+++||++|+|++++|++++++++|||++|+|..+++|+|++++ ++|+|
T Consensus 102 ~Eel~~~~~~-~~~~~~~~~~~~~~l~~~Gt~eQk~~~Lp~la~Ge~~~a~alTEp~aGSD~~~~~T~A~~~~dG~~yvL 180 (597)
T 3owa_A 102 AEKFSRAGGF-AITHGAHVGIGSLPIVLFGNEEQKKKYLPLLATGEKLAAYALTEPGSGSDALGAKTTARLNAEGTHYVL 180 (597)
T ss_dssp HHHHGGGTHH-HHHHHHHHTTTTHHHHHHCCHHHHHHHHHHHHHTSSCEEEECCBTTBSSSGGGCCCEEEECTTSSEEEE
T ss_pred HHHHHccchH-HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCcceeeEecCCCCCCCcccceeEEEEeCCCCEEEE
Confidence 9999998643 33344444344456788999999999999999999999999999999999999999999864 45999
Q ss_pred eeEeecccCCCCCCEEEEEEEeCCCCCCCCeEEEEEeCCCCCeEEeccCcccCCCCCceeeEEeceeeeCCCCcccCCCc
Q 023999 180 NGNKMWCTNGPVAQTLVVYAKTDIKAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGK 259 (274)
Q Consensus 180 ~G~k~~vs~~~~a~~~lv~a~~~~~~~~~~~~~~lv~~~~~gv~~~~~~~~~Gl~~~~~~~v~f~~v~Vp~~~llg~~g~ 259 (274)
||+|.|+||+..||+++|+|+.++ +++++|+||++.|||++.+.|+++|++++++++|.|+||+||++++||.+++
T Consensus 181 nG~K~~is~a~~Ad~~lV~Art~~----~g~s~flV~~~~pGv~v~~~~~~~Glrgs~t~~v~fddV~VP~~~lLG~~g~ 256 (597)
T 3owa_A 181 NGEKQWITNSAFADVFIVYAKIDG----EHFSAFIVEKDYAGVSTSPEEKKMGIKCSSTRTLILEDALVPKENLLGEIGK 256 (597)
T ss_dssp EEEEEEEETTTTCSEEEEEEEETT----TEEEEEEEETTSTTEEECCCCCBSSCTTSCEEEEEEEEEEEEGGGEESSTTC
T ss_pred eeEEEEeCCCccCCEEEEEEEeCC----CceEEEEEeCCCCCeEEecccccccCCCCCceEEEEeceeecHHHhcCcccc
Confidence 999999999999999999999864 3789999999999999999999999999999999999999999999999999
Q ss_pred ccccccC
Q 023999 260 GCNSFGE 266 (274)
Q Consensus 260 g~~~~~~ 266 (274)
|+.+...
T Consensus 257 G~~~~~~ 263 (597)
T 3owa_A 257 GHIIAFN 263 (597)
T ss_dssp HHHHHHH
T ss_pred hHHHHHH
Confidence 9876543
No 24
>1siq_A GCD, glutaryl-COA dehydrogenase; acyl-COA dehydrogenase, decarboxylation, flavin protein, oxidoreductase; HET: FAD; 2.10A {Homo sapiens} SCOP: a.29.3.1 e.6.1.1 PDB: 2r0n_A* 1sir_A* 2r0m_A*
Probab=100.00 E-value=9.9e-41 Score=303.60 Aligned_cols=226 Identities=29% Similarity=0.520 Sum_probs=205.1
Q ss_pred CCCCHHHHHHHHHHHHHHHHhhcCcchhchhccCCCCCcHHHHHHHHhcCCcCCCCCccCCCCCCCHHHHHHHHHHHHhh
Q 023999 29 SLLFDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAMEEISRA 108 (274)
Q Consensus 29 ~~~s~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~~l~vPe~~GG~g~~~~~~~~v~e~lg~~ 108 (274)
..++++++ ++++++++|+.+.+.+...+.++.+.+|. ++|+.|++.||+++.+ ++|||.|+++.+++.++|+++++
T Consensus 12 ~~~~~e~~-~l~~~~r~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~Gl~~l~~-~~~GG~g~~~~~~~~~~eel~~~ 87 (392)
T 1siq_A 12 EQLTTDEI-LIRDTFRTYCQERLMPRILLANRNEVFHR--EIISEMGELGVLGPTI-KGYGCAGVSSVAYGLLARELERV 87 (392)
T ss_dssp GGSCHHHH-HHHHHHHHHHHHHTHHHHHHHHHHTCCCT--HHHHHHHHTTCSSTTC-EETTEECCCHHHHHHHHHHHHTT
T ss_pred CCCCHHHH-HHHHHHHHHHHHhcCcchHHHHhhCCCCH--HHHHHHHhCCCCcccH-HhhCCCCCCHHHHHHHHHHHHHh
Confidence 35789999 99999999999988888777778888999 9999999999999999 99999999999999999999999
Q ss_pred cCcchhhhhhhhHHHHHHHHhcCCHHHHHHHhHHHhcCCceEEEEeeCCCCCCCCCCceEEEEEe--CCeEEEeeEeecc
Q 023999 109 SGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRV--DGGYIINGNKMWC 186 (274)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~G~~~~~~a~te~~~g~d~~~~~~~a~~~--~~g~~l~G~k~~v 186 (274)
++++++.+..+...+...+..+|+++||++|++++++|++++++++|||++|+|+..++|+|+++ +|||+|||+|.|+
T Consensus 88 ~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~g~~~~~~a~tEp~~gsd~~~~~t~A~~~~~~~g~~lnG~K~~v 167 (392)
T 1siq_A 88 DSGYRSAMSVQSSLVMHPIYAYGSEEQRQKYLPQLAKGELLGCFGLTEPNSGSDPSSMETRAHYNSSNKSYTLNGTKTWI 167 (392)
T ss_dssp CHHHHHHHHHHHHTTHHHHHHHSCHHHHHHHHHHHHTTSSCEEEECCBTTBSSCGGGCCCEEEEETTTTEEEEEEEEEEE
T ss_pred CcHHHHHHHHHHhHHHHHHHHhCCHHHHHHHHHHHhCCCeEEEEEECCCCCCcCccccEEEEEEeCCCCEEEEEEEEEee
Confidence 99877655555434456788899999999999999999999999999999999999999999999 9999999999999
Q ss_pred cCCCCCCEEEEEEEeCCCCCCCCeEEEEEeCCCCCeEEeccCcccCCCCCceeeEEeceeeeCCCCcccCCCccccc
Q 023999 187 TNGPVAQTLVVYAKTDIKAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGCNS 263 (274)
Q Consensus 187 s~~~~a~~~lv~a~~~~~~~~~~~~~~lv~~~~~gv~~~~~~~~~Gl~~~~~~~v~f~~v~Vp~~~llg~~g~g~~~ 263 (274)
||+..||+++|+++.++ .++.+|+||++.|||++.+.|+++|++++++++|.|+||+||++++++.. +|+..
T Consensus 168 s~~~~Ad~~~v~a~~~~----g~~~~flV~~~~pGv~v~~~~~~~G~~~~~~~~v~fd~v~Vp~~~~lg~~-~g~~~ 239 (392)
T 1siq_A 168 TNSPMADLFVVWARCED----GCIRGFLLEKGMRGLSAPRIQGKFSLRASATGMIIMDGVEVPEENVLPGA-SSLGG 239 (392)
T ss_dssp ETGGGCSEEEEEEEETT----SCEEEEEEETTCTTEECCBCCCCSSSTTSCEEEEEEEEEEEEGGGBCTTC-CSSHH
T ss_pred cCCcccCEEEEEEEECC----CCEEEEEEeCCCCCeEeccccccccccCCceEEEEEccEEECHHHcCCcc-cCHHH
Confidence 99999999999999853 24789999999999999999999999999999999999999999999875 46654
No 25
>2z1q_A Acyl-COA dehydrogenase; FAD, structural genomics, NPPSFA, Na project on protein structural and functional analyses; HET: FAD; 2.30A {Thermus thermophilus}
Probab=100.00 E-value=7.5e-41 Score=317.92 Aligned_cols=232 Identities=33% Similarity=0.572 Sum_probs=205.7
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHhhcCcchhchhcc-CCCCCcHHHHHHHHhcCCcCCCCCccCCCCCCCHHHHHHHHHHH
Q 023999 27 STSLLFDDTQLQFKESVGQFARENIAPRAANIDQS-NSFPQDVNLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAMEEI 105 (274)
Q Consensus 27 ~~~~~s~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~G~~~l~vPe~~GG~g~~~~~~~~v~e~l 105 (274)
+...+++|++ ++++.+++|+.+.+.+...+.+.. ..+|. ++|+.+.+.||+++.+|++|||.|+++.+.+.++|++
T Consensus 24 ~~~~~~~e~~-~l~~~~~~~~~~~~~p~~~~~~~~~~~~p~--~~~~~l~e~Gl~~l~vPee~GG~g~~~~~~~~v~eel 100 (577)
T 2z1q_A 24 TPEDFDESVK-EIARTTRTFVEREVLPLLERMEHGELELNV--PLMRKAGELGLLAIDVPEEYGGLDLPKVISTVVAEEL 100 (577)
T ss_dssp CGGGCCHHHH-HHHHHHHHHHHTTTHHHHHHHHTTCGGGHH--HHHHHHHHTTTTSTTSCGGGTCCCCCHHHHHHHHHHH
T ss_pred CCCCCCHHHH-HHHHHHHHHHhccCchhHHhhhcccCCCCH--HHHHHHHHCCCCCcCCChhhCCCCCCHHHHHHHHHHH
Confidence 3456789998 999999999998887774444322 25677 9999999999999999999999999999999999999
Q ss_pred HhhcCcchhhhhhhhHHHHHHHHhcCCHHHHHHHhHHHhcCCceEEEEeeCCCCCCCCCCceEEEEEe--CCeEEEeeEe
Q 023999 106 SRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRV--DGGYIINGNK 183 (274)
Q Consensus 106 g~~~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~G~~~~~~a~te~~~g~d~~~~~~~a~~~--~~g~~l~G~k 183 (274)
.+++++++.+..|...+...|..+|+++||++|+|++++|++++++++|||++|+|...+.|+|+++ +++|+|||+|
T Consensus 101 -~~~~s~~~~~~~~~~~~~~~l~~~Gt~eQk~~~Lp~l~~G~~~~a~alTEp~aGSD~~~~~t~A~~~~dG~~~vLnG~K 179 (577)
T 2z1q_A 101 -SGSGGFSVTYGAHTSIGTLPLVYFGTEEQKRKYLPKLASGEWIAAYCLTEPGSGSDALAAKTRATLSEDGKHYILNGVK 179 (577)
T ss_dssp -TTSCTHHHHHHHHHTTTTHHHHHHCCHHHHHTTHHHHHHTSSCEEEECCBTTBSSSGGGCCCEEEECTTSSEEEEEEEE
T ss_pred -hhcccHHHHHhhhHHHHHHHHHHhCCHHHHHHHHHHHhCCCeEEEEEecCCCCCCCcccCeeEEEEeCCCCEEEEEEEe
Confidence 7788887766666434456788999999999999999999999999999999999999999999984 4579999999
Q ss_pred ecccCCCCCCEEEEEEEeCCCCCCCCeEEEEEeCCCCCeEEeccCcccCCCCCceeeEEeceeeeCCCCcccCCCccccc
Q 023999 184 MWCTNGPVAQTLVVYAKTDIKAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGCNS 263 (274)
Q Consensus 184 ~~vs~~~~a~~~lv~a~~~~~~~~~~~~~~lv~~~~~gv~~~~~~~~~Gl~~~~~~~v~f~~v~Vp~~~llg~~g~g~~~ 263 (274)
.|+||+..||+++|+|+.++ +++++|+||++.|||++.+.|+++|++++++++|.|+||+||.+++||.+++|+.+
T Consensus 180 ~~it~a~~Ad~~~V~Ar~~g----~gis~flVp~~~pGv~v~~~~~~~G~~~~~~~~v~fddv~VP~~~llg~~g~g~~~ 255 (577)
T 2z1q_A 180 QWISNAGFAHLFTVFAKVDG----EHFTAFLVERDTPGLSFGPEEKKMGIKASSTRQVILEDVKVPVENVLGEIGKGHKI 255 (577)
T ss_dssp EEEETTTTCSEEEEEEEETT----TEEEEEEEETTCTTEEECCCCCBSSCTTSCEEEEEEEEEEEEGGGEESCTTCTHHH
T ss_pred eCCCCCCccCEEEEEEEeCC----CeeEEEEEeCCCCCeEecCCCCCCCCCCCceeEEEecceeccHHHccCCCCchHHH
Confidence 99999999999999999752 47899999999999999999999999999999999999999999999999999876
Q ss_pred ccC
Q 023999 264 FGE 266 (274)
Q Consensus 264 ~~~ 266 (274)
.++
T Consensus 256 ~~~ 258 (577)
T 2z1q_A 256 AFN 258 (577)
T ss_dssp HHH
T ss_pred HHH
Confidence 554
No 26
>2c12_A Nitroalkane oxidase; oxidoreductase, flavoenzyme, acyl-COA dehydrogenase, long cell EDGE, FAD, inhibitor, flavoprotein; HET: SPM FAD PE4; 2.07A {Fusarium oxysporum} SCOP: a.29.3.1 e.6.1.1 PDB: 2c0u_A* 2zaf_A* 2reh_A* 3d9g_A* 3d9f_A* 3d9d_A* 3d9e_A* 3fcj_A*
Probab=100.00 E-value=1.3e-40 Score=307.08 Aligned_cols=235 Identities=20% Similarity=0.301 Sum_probs=206.0
Q ss_pred CCCCHHHHHHHHHHHHHHHHhhcCcchhchhcc----CCCCCcHHHHHHHHhcCCcCCCCCccCCCCCCCHHHHHHHHHH
Q 023999 29 SLLFDDTQLQFKESVGQFARENIAPRAANIDQS----NSFPQDVNLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAMEE 104 (274)
Q Consensus 29 ~~~s~~~~~~l~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~l~~~G~~~l~vPe~~GG~g~~~~~~~~v~e~ 104 (274)
..+++++. ++++.+++|+++.+.+...+.++. +.+|...++|+++.+.||+++.+|++|||.|+++.+.+.++|+
T Consensus 4 ~~~~~e~~-~l~~~~r~f~~~~~~p~~~~~d~~~~~~~~~~~~~~~~~~l~~~Gl~~~~~P~~~GG~g~~~~~~~~v~ee 82 (439)
T 2c12_A 4 FKLSPSQL-EARRHAQAFANTVLTKASAEYSTQKDQLSRFQATRPFYREAVRHGLIKAQVPIPLGGTMESLVHESIILEE 82 (439)
T ss_dssp CCCCHHHH-HHHHHHHHHHHHTGGGHHHHHTTCSSHHHHHHTTHHHHHHHHHTTTTGGGSBGGGTCCBCCHHHHHHHHHH
T ss_pred CCCCHHHH-HHHHHHHHHHHHhCChhHHHHhhcccccCCCCChHHHHHHHHHCCCCCCCCChhhCCCCCCHHHHHHHHHH
Confidence 45789999 999999999999988876555443 2344112899999999999999999999999999999999999
Q ss_pred HHhhcCcchhhhhhhhHHHHHHHHhcCCHHHHHHHhHHHh--cCCceEEEEeeCCCCCC-----CCCCceEEEEEeCCeE
Q 023999 105 ISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLI--SGEHVGALAMSEPNAGS-----DVVGMKCKADRVDGGY 177 (274)
Q Consensus 105 lg~~~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~--~G~~~~~~a~te~~~g~-----d~~~~~~~a~~~~~g~ 177 (274)
++++++++++.+..|. .+...+..+|+++||++|+++++ +|++++++++|||++|+ |...++|+|++++|||
T Consensus 83 la~~~~~~~~~~~~~~-~~~~~l~~~g~~~q~~~~l~~~~~~~G~~~~~~a~tEp~~Gs~~~~sd~~~~~t~A~~~~~g~ 161 (439)
T 2c12_A 83 LFAVEPATSITIVATA-LGLMPVILCDSPSLQEKFLKPFISGEGEPLASLMHSEPNGTANWLQKGGPGLQTTARKVGNEW 161 (439)
T ss_dssp HHTTCCTTHHHHHHHH-HHHHHHHHSSCHHHHHHHTGGGGSSCSCCCEEEECCCTTCSTTTTCTTSCCCSCEEEEETTEE
T ss_pred HHhhChHHHHHHHHhH-HHHHHHHHhCCHHHHHHHHHHHhhcCCCEEEEEEecCCCCCCCccccccccceeEEEEcCCEE
Confidence 9999999988776665 55667889999999999999999 69999999999999987 5778889999999999
Q ss_pred EEeeEeecccCCC-----CCCEEEEEEEe-C----CC----CCCCCeEEEEEeCCCC------CeEEeccCcccCCCCCc
Q 023999 178 IINGNKMWCTNGP-----VAQTLVVYAKT-D----IK----AGSKGITAFIIEKGMP------GFSTAQKLDKLGMRGSD 237 (274)
Q Consensus 178 ~l~G~k~~vs~~~-----~a~~~lv~a~~-~----~~----~~~~~~~~~lv~~~~~------gv~~~~~~~~~Gl~~~~ 237 (274)
+|||+|.|+||+. .||+++|+++. + ++ ++.+++++|+||++.| |+++.++|+++|+++++
T Consensus 162 ~lnG~K~~is~~~~~~~~~Ad~~~v~ar~~~~~~~~~~~~~~~~~g~~~flV~~~~pGv~~~~Gv~v~~~~~~~G~r~~~ 241 (439)
T 2c12_A 162 VISGEKLWPSNSGGWDYKGADLACVVCRVSDDPSKPQDPNVDPATQIAVLLVTRETIANNKKDAYQILGEPELAGHITTS 241 (439)
T ss_dssp EEEEEEECCTTTTTTTSSCCSEEEEEEEECSCTTSCCCTTSCGGGGEEEEEECHHHHHTSCGGGEEEEECCCBSSCTTCC
T ss_pred EEEeEEEeecCCCccccccCcEEEEEEEcCCcccCccccccCCCCceEEEEEECCCCcccCCCceEeCCcccccccCCCC
Confidence 9999999999997 99999999998 5 22 2334789999999998 88898999999999999
Q ss_pred eeeEEeceeeeCCCCcccCCCcccc-ccc
Q 023999 238 TCELVFENCFVPNENVLGQEGKGCN-SFG 265 (274)
Q Consensus 238 ~~~v~f~~v~Vp~~~llg~~g~g~~-~~~ 265 (274)
+++|.|+||+||++++||.+++|+. +++
T Consensus 242 ~~~v~fddv~VP~~~~lg~~~~g~~~~~~ 270 (439)
T 2c12_A 242 GPHTRFTEFHVPHENLLCTPGLKAQGLVE 270 (439)
T ss_dssp CCEEEEEEEEEEGGGBCSCTTHHHHHHHH
T ss_pred ceEEEEccEEecHHHcCCCCCccHHHHHH
Confidence 9999999999999999999998887 543
No 27
>3mkh_A Nitroalkane oxidase; oxidoreductase flavoenzyme, acyl-COA dehydrogen flavoprotein, oxidoreductase; HET: FAD; 2.00A {Podospora anserina}
Probab=100.00 E-value=9e-41 Score=308.01 Aligned_cols=236 Identities=20% Similarity=0.277 Sum_probs=204.4
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhhcCcchhchhc----cC-CCCCcHHHHHHHHhcCCcCCCCCccCCCCCCCHHHHHHHH
Q 023999 28 TSLLFDDTQLQFKESVGQFARENIAPRAANIDQ----SN-SFPQDVNLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAM 102 (274)
Q Consensus 28 ~~~~s~~~~~~l~~~~~~~~~~~~~~~~~~~~~----~~-~~~~~~~~~~~l~~~G~~~l~vPe~~GG~g~~~~~~~~v~ 102 (274)
++.++++|+ ++++++++|+++.+.|...+.+. .+ .+|...++|++|.++||+++.+|++|||.|+++.+++.++
T Consensus 4 ~~~~~~e~~-~l~~~~r~f~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gl~~l~~P~e~GG~g~~~~~~~~v~ 82 (438)
T 3mkh_A 4 DFHLSASQK-GTYQAARSLARNLLMPARQTYLQHPPNSPLRFQSTQPTYAAAVSAGILKGQISPAHGGTGGTLIESAILV 82 (438)
T ss_dssp BCCCCHHHH-HHHHHHHHHHHHTHHHHHHHHTTSCTTCHHHHHTTHHHHHHHHHTTTTGGGSCGGGTCCCCCHHHHHHHH
T ss_pred CCCCCHHHH-HHHHHHHHHHHHhcCcHHHHHhhccccccCcCCCcHHHHHHHHhCCCCCCCCCcccCCCCCCHHHHHHHH
Confidence 356899999 99999999999998887655432 22 4541238999999999999999999999999999999999
Q ss_pred HHHHhhcCcchhhhhhhhHHHHHHHHhcCCHHHHHHHhHHHhcC--CceEEEEeeCCCCCC-----CCCCceEEEEEeCC
Q 023999 103 EEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISG--EHVGALAMSEPNAGS-----DVVGMKCKADRVDG 175 (274)
Q Consensus 103 e~lg~~~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~G--~~~~~~a~te~~~g~-----d~~~~~~~a~~~~~ 175 (274)
|++++.++++++.+..+. ++...+..+++++ |++|++++++| +.++++++|||++|+ |+..++|+|++++|
T Consensus 83 eela~~~~~~~~~~~~~~-~~~~~l~~~g~~~-~~~~l~~~~~G~g~~~~~~a~tEp~~gs~~~~sd~~~~~t~A~~~g~ 160 (438)
T 3mkh_A 83 EECYSVEPSAALTIFATG-LGLTPINLAAGPQ-HAEFLAPFLSGEGSPLASLVFSEPGGVANALEKGAPGFQTTARLEGD 160 (438)
T ss_dssp HHHHHHCHHHHHHHHHHH-HHHHHHHHHCCGG-GHHHHGGGSSSCSCCCEEEECCCTTCCTTTTCTTSCCCSCEEEEETT
T ss_pred HHHHhhChhHHHHHHHhh-HHHHHHHhhCCHH-HHHHHHHHhcCCCCceEEEEEccCCCCCCccccccccceeEEEEeCC
Confidence 999999998887665554 5566777899999 99999999996 589999999999998 58889999999999
Q ss_pred eEEEeeEeecccCCC-----CCCEEEEEEEeCC------CCCCCCeEEEEEeCCC-----CC-eEEeccCcccCCCCCce
Q 023999 176 GYIINGNKMWCTNGP-----VAQTLVVYAKTDI------KAGSKGITAFIIEKGM-----PG-FSTAQKLDKLGMRGSDT 238 (274)
Q Consensus 176 g~~l~G~k~~vs~~~-----~a~~~lv~a~~~~------~~~~~~~~~~lv~~~~-----~g-v~~~~~~~~~Gl~~~~~ 238 (274)
||+|||+|.|+||+. .||+++|+|+..+ .++.+++++|+||+++ || |++.+.|+++|++++++
T Consensus 161 g~~lnG~K~~is~a~~~~~~~Ad~~~v~a~~~~~~~~~~~~~~~g~~~flV~~~~~~~~~pG~v~v~~~~~~~G~r~~~~ 240 (438)
T 3mkh_A 161 EWVINGEKMWATNCAGWDFKGCDLACVVCRDATTPLEEGQDPENKVMIILVTRADLDRNGEGSFEVLRHVATPGHTSVSG 240 (438)
T ss_dssp EEEEEEEECSCTTTTCTTSSCCSEEEEEEEECSSCCCTTCCGGGGEEEEEEEHHHHHHHCTTSEEEEECCCCSSCTTCCC
T ss_pred EEEEEeEEEEecCCCccccccCcEEEEEEEecCcccCcccCCCCceEEEEEecCccccCCCCcEEecCcCCCcCCcCCCc
Confidence 999999999999987 8999999999753 1123478999999875 88 99999999999999999
Q ss_pred eeEEeceeeeCCCCcccCCCcccccccC
Q 023999 239 CELVFENCFVPNENVLGQEGKGCNSFGE 266 (274)
Q Consensus 239 ~~v~f~~v~Vp~~~llg~~g~g~~~~~~ 266 (274)
++|.|+||+||++++||.+++|+.+++.
T Consensus 241 ~~v~fddv~VP~~~~lg~~~~g~~~~~~ 268 (438)
T 3mkh_A 241 PHVRYTNVRVPTKNVLCPAGQGAKVAFG 268 (438)
T ss_dssp CEEEEEEEEEEGGGEEECTTTHHHHHHH
T ss_pred eEEEECcEEECHHHcCCCCCchHHHHHH
Confidence 9999999999999999999999876554
No 28
>2uxw_A VERY-long-chain specific acyl-COA dehydrogenase; fatty acid metabolism, transit peptide, disease mutation, LI metabolism, coenzyme A dehydrogenase; HET: FAD TH3; 1.45A {Homo sapiens} PDB: 3b96_A*
Probab=100.00 E-value=4e-40 Score=314.03 Aligned_cols=234 Identities=33% Similarity=0.589 Sum_probs=205.3
Q ss_pred CCCCHHHH---HHHHHHHHHHHHhhcCcchhchhccCCCCCcHHHHHHHHhcCCcCCCCCccCCCCCCCHHHHHHHHHHH
Q 023999 29 SLLFDDTQ---LQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAMEEI 105 (274)
Q Consensus 29 ~~~s~~~~---~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~~l~vPe~~GG~g~~~~~~~~v~e~l 105 (274)
..++++++ +++++.+++|+.+.+.+. +.|..+.+|. ++|+.+++.||+++.+|++|||.|++..+.+.++|++
T Consensus 44 ~~l~~~~~~~~~~l~~~~~~~~~~~~~~~--~~d~~~~~p~--~~~~~l~e~Gl~~l~~P~e~GG~gl~~~~~~~v~e~l 119 (607)
T 2uxw_A 44 SVLNEEQTQFLKELVEPVSRFFEEVNDPA--KNDALEMVEE--TTWQGLKELGAFGLQVPSELGGVGLCNTQYARLVEIV 119 (607)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHHHTCCHH--HHHHHTSCCH--HHHHHHHHTTTTCTTSCGGGTSCCCCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHhhcCHH--HhccccCCCH--HHHHHHHHcCCcCCCCChhhCCCCCCHHHHHHHHHHH
Confidence 45677775 148899999998887543 3466677888 9999999999999999999999999999999999999
Q ss_pred HhhcCcchhhhhhhhHHHHHHHHhcCCHHHHHHHhHHHhcCCceEEEEeeCCCCCCCCCCceEEEEEeC--CeEEEeeEe
Q 023999 106 SRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVD--GGYIINGNK 183 (274)
Q Consensus 106 g~~~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~G~~~~~~a~te~~~g~d~~~~~~~a~~~~--~g~~l~G~k 183 (274)
+++++++++.+..|...+...|..+|+++||++|+|++++|++++++++|||++|+|+..++|+|++++ ++|+|||+|
T Consensus 120 ~~~~~s~a~~~~~~~~~g~~~l~~~Gt~eqk~~~Lp~l~~G~~~~~~alTEp~aGSD~~~~~t~A~~~~dG~~y~LnG~K 199 (607)
T 2uxw_A 120 GMHDLGVGITLGAHQSIGFKGILLFGTKAQKEKYLPKLASGETVAAFCLTEPSSGSDAASIRTSAVPSPCGKYYTLNGSK 199 (607)
T ss_dssp HHHCHHHHHHHHHHHTTTTHHHHHHCCHHHHHHHHHHHHTTSSCEEEECCBTTBSSCGGGCCCEEEECTTSSEEEEEEEE
T ss_pred HHcccHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhCCCeEEEEEecCCCCCCCcccceeEEEEeCCCCEEEEEeEE
Confidence 999998887666553243577888999999999999999999999999999999999999999999974 479999999
Q ss_pred ecccCCCCCCEEEEEEEeCCCC---C--CCCeEEEEEeCCCCCeEEeccCcccCCCCCceeeEEeceeeeCCCCcccCCC
Q 023999 184 MWCTNGPVAQTLVVYAKTDIKA---G--SKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEG 258 (274)
Q Consensus 184 ~~vs~~~~a~~~lv~a~~~~~~---~--~~~~~~~lv~~~~~gv~~~~~~~~~Gl~~~~~~~v~f~~v~Vp~~~llg~~g 258 (274)
.|+|++..||+++|+|+.++.+ + .+++++|+||++.|||++.+.|+++|++++++++|.|+||+||.+++||.++
T Consensus 200 ~~is~~~~Ad~~lV~Ar~~~~~~~~g~~~~gis~flVp~~~~Gv~v~~~~~~~G~rg~~t~~v~fddv~VP~~~llG~~g 279 (607)
T 2uxw_A 200 LWISNGGLADIFTVFAKTPVTDPATGAVKEKITAFVVERGFGGITHGPPEKKMGIKASNTAEVFFDGVRVPSENVLGEVG 279 (607)
T ss_dssp EEEETTTTCSEEEEEEEEEEECTTTCCEEEEEEEEEEEGGGSSEEECCCCCCSSCTTSCEEEEEEEEEEEEGGGEESSTT
T ss_pred EeecCCcccCEEEEEEEecCCCcccCCCCCceEEEEEeCCCCCeEEecCccccCCCCCCeeEEEeccEEecHHHhcCCCC
Confidence 9999999999999999975321 1 3478999999999999999999999999999999999999999999999999
Q ss_pred cccccccC
Q 023999 259 KGCNSFGE 266 (274)
Q Consensus 259 ~g~~~~~~ 266 (274)
+|+.+++.
T Consensus 280 ~G~~~~~~ 287 (607)
T 2uxw_A 280 SGFKVAMH 287 (607)
T ss_dssp CHHHHHHH
T ss_pred chHHHHHH
Confidence 99876543
No 29
>3mxl_A Nitrososynthase; flavin monooxygenase, acyl-COA dehydrogenas oxidoreductase; 3.15A {Micromonospora carbonacea}
Probab=100.00 E-value=4.4e-40 Score=299.42 Aligned_cols=228 Identities=23% Similarity=0.406 Sum_probs=198.8
Q ss_pred CCCCHHHHHHHHHHHHHHHHhhcCcchhchhccCCCCCcHHHHHHHHhcCCcCCCCCccCCCCC-CCHHHHHHHHHHHHh
Q 023999 29 SLLFDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEYGGLG-LGYLYHCIAMEEISR 107 (274)
Q Consensus 29 ~~~s~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~~l~vPe~~GG~g-~~~~~~~~v~e~lg~ 107 (274)
..++++|+ ++++.+++|+. .+.+.+.+.|+++.+|. ++|+.|.+.||+++.+|++|||.| .++.+.+.++|++++
T Consensus 7 ~~lt~e~~-~~~~~~r~~~~-~~~~~a~~~d~~~~~p~--~~~~~l~~~Gl~~~~~P~~~GG~g~~~~~~~~~~~eel~~ 82 (395)
T 3mxl_A 7 APLTPAGR-TVVDLLAGVIP-RISAEAADRDRTGTFPV--EAFEQFAKLGLMGATVPAELGGLGLTRLYDVATALMRLAE 82 (395)
T ss_dssp SCCSHHHH-HHHHHHTTTHH-HHHHHHHHHHHHTCCCH--HHHHHHHHHTGGGCSSCTTTTSCCCCCHHHHHHHHHHHHT
T ss_pred cCCCHHHH-HHHHHHHHHHH-HHhhchHHHhhhCCCCH--HHHHHHHHCCCcCcCCChhhCCCCCcCHHHHHHHHHHHHh
Confidence 46789999 99999999986 47788888899999999 999999999999999999999999 999999999999999
Q ss_pred hcCcchhhhhhhhHHHHHHH--HhcCCHHHH---HHHhHHHhcCCceEEEEeeCCCCCCCCCCceEEEEEeCCeEEEeeE
Q 023999 108 ASGSVGLSYGAHSNLCINQL--VRHGSPAQK---DKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGN 182 (274)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~l--~~~g~~~q~---~~~l~~~~~G~~~~~~a~te~~~g~d~~~~~~~a~~~~~g~~l~G~ 182 (274)
+++++++.+..|...+..++ ..+|+++|| ++|++++++|+.++++++|||++|. ..+++ +++|||+|||+
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~qk~~~~~~l~~~~~g~~~~~~a~tEp~~~~--~~~~t---~~~~g~~lnG~ 157 (395)
T 3mxl_A 83 ADASTALAWHVQLSRGLTLTYEWQHGTPPVRAMAERLLRAMAEGEAAVCGALKDAPGVV--TELHS---DGAGGWLLSGR 157 (395)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHTSCCEECCCSBCTTCC--CEEEE---CSSSCEEEEEE
T ss_pred hCcHHHHHHHHHHHHHHHHHHHhhcCCHHHHhHHHHHHHHHhcCCcEEEEEecCCCCCC--CceEE---ecCCEEEEeeE
Confidence 99998887766643443333 356999999 9999999999999999999998652 22222 36788999999
Q ss_pred eecccCCCCCCEEEEEEEeCCCCCCCCeEEEEEeCCCCCeEEeccCcccCCCCCceeeEEeceeeeCCCCccc--CCCcc
Q 023999 183 KMWCTNGPVAQTLVVYAKTDIKAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLG--QEGKG 260 (274)
Q Consensus 183 k~~vs~~~~a~~~lv~a~~~~~~~~~~~~~~lv~~~~~gv~~~~~~~~~Gl~~~~~~~v~f~~v~Vp~~~llg--~~g~g 260 (274)
|.|+||+..||+++|+++.+++++.+++++|+||+++|||++.+.|+++|++++++++|.|+||+||+++++| .++.|
T Consensus 158 K~~is~a~~Ad~~~v~a~~~~~~~~~g~~~flV~~~~pGv~v~~~~~~~G~r~~~~~~v~f~~v~Vp~~~~lg~~~~g~g 237 (395)
T 3mxl_A 158 KVLVSMAPIATHFFVHAQRRDDDGSVFLAVPVVHRDAPGLTVLDNWDGLGMRASGTLEVVFDRCPVRADELLERGPVGAR 237 (395)
T ss_dssp EEEETTGGGCSEECCCEEEECTTSCEEEECCCEETTCTTEEEECCCCBSSCTTSCCEEEEEEEEEECGGGCCEEEESSCC
T ss_pred EEEecCccccCEEEEEEEeCCCCCCCceEEEEEECCCCceEeCCCchhcCCCCCCcceEEEcceEcCHHHhcCCCCCCcc
Confidence 9999999999999999998765455578899999999999999999999999999999999999999999998 67777
Q ss_pred ccccc
Q 023999 261 CNSFG 265 (274)
Q Consensus 261 ~~~~~ 265 (274)
+....
T Consensus 238 ~~~~~ 242 (395)
T 3mxl_A 238 RDAVL 242 (395)
T ss_dssp CTTHH
T ss_pred HHHHH
Confidence 65443
No 30
>3m9v_A FAD-dependent oxidoreductase; KIJD3, fatty acyl-COA dehydrogenase family, kijanose, kijani FAD, flavoprotein; HET: TYD; 2.05A {Actinomadura kijaniata}
Probab=100.00 E-value=3.3e-39 Score=297.65 Aligned_cols=228 Identities=24% Similarity=0.441 Sum_probs=196.0
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhhcCcchhchhccCCCCCcHHHHHHHHhcCCcCCCCCccCCCCC-CCHHHHHHHHHHHH
Q 023999 28 TSLLFDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEYGGLG-LGYLYHCIAMEEIS 106 (274)
Q Consensus 28 ~~~~s~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~~l~vPe~~GG~g-~~~~~~~~v~e~lg 106 (274)
+..++++++ ++++++++|+. .+.+.+.+.|+.+.+|. ++|+.|++.||+++.+|++|||.| .++.+++.++|+++
T Consensus 17 ~~~lt~e~~-~l~~~~r~~~~-~~~~~a~~~d~~~~~~~--~~~~~l~~~Gl~~l~~P~~~GG~gl~~~~~~~~v~eel~ 92 (439)
T 3m9v_A 17 YAPVTPAGR-VLLDRLAAHLP-RIRSTAAEHDRDGTFPT--DTFDALRKDGLMGATVPAELGGLGVDRLYDVAVALLAVA 92 (439)
T ss_dssp SSCSSHHHH-HHHHHHHTTHH-HHHHHHHHHHHHTCCCH--HHHHHHHHTTGGGTTSCGGGTSCCCCCHHHHHHHHHHHH
T ss_pred CCCCCHHHH-HHHHHHHHHHH-HHhhhHHHHHhcCCCCH--HHHHHHHHCCCccCCCChhhCCCCCCCHHHHHHHHHHHH
Confidence 456789999 99999999986 57777888888999999 999999999999999999999999 89999999999999
Q ss_pred hhcCcchhhhhhhhHHHHHH--HHhcCCHHH---HHHHhHHHhcCCceEEEEeeCCCCCCCCCCceEEEEEeCCeEEEee
Q 023999 107 RASGSVGLSYGAHSNLCINQ--LVRHGSPAQ---KDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIING 181 (274)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~--l~~~g~~~q---~~~~l~~~~~G~~~~~~a~te~~~g~d~~~~~~~a~~~~~g~~l~G 181 (274)
++++++++.+..|......+ +..+|+++| |++|++++++|++++++++|||++ +...+.+ +++|||+|||
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~q~~~k~~~l~~l~~g~~~~~~a~tEp~~--~~~~~~t---~~~~g~vlnG 167 (439)
T 3m9v_A 93 RADASTALALHMQLSRGLTLGYEWRHGDERARTLAERILRGMVAGDAVVCSGIKDHHT--AVTTLRP---DGAGGWLLSG 167 (439)
T ss_dssp HHCHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHTCCCEEEECEECTT--CCCEEEE---CSSSCEEEEE
T ss_pred hhChHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCceEEEeecCCCC--CCCceee---ccCCEEEEEe
Confidence 99999887766664333333 346799999 999999999999999999999975 3333322 2778899999
Q ss_pred EeecccCCCCCCEEEEEEEeCCCCCCCCeEEEEEeCCCCCeEEeccCcccCCCCCceeeEEeceeeeCCCCccc--CCCc
Q 023999 182 NKMWCTNGPVAQTLVVYAKTDIKAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLG--QEGK 259 (274)
Q Consensus 182 ~k~~vs~~~~a~~~lv~a~~~~~~~~~~~~~~lv~~~~~gv~~~~~~~~~Gl~~~~~~~v~f~~v~Vp~~~llg--~~g~ 259 (274)
+|.|+||+..||+++|+++.+++.+.+++++|+||+++|||++.+.|+++|++++++++|.|+||+||++++|| .++.
T Consensus 168 ~K~~~s~a~~Ad~~~v~art~~~~~~~g~~~flVp~~~pGv~i~~~~~~~G~~~~~~~~v~fddv~VP~~~~lg~~~~g~ 247 (439)
T 3m9v_A 168 RKTLVSMAPVGTHFVINARTDGTDGPPRLASPVVTRDTPGFTVLDNWDGLGMRASGTVDIVFDDCPIPADHVLMRDPVGA 247 (439)
T ss_dssp EEEEETTGGGCSEEEECEEECC--CCCCEEEEEEETTCTTEEECCCCCCSSCTTSCCEEEEEEEEEECGGGEEECCC--C
T ss_pred EEEeecCccccCEEEEEEEecCCCCCceeEEEEEECCCCCeEECCCcccCCcCCCCceeEEEeeeEcCHHHccCCCCCCc
Confidence 99999999999999999998765556679999999999999999999999999999999999999999999999 6777
Q ss_pred ccccc
Q 023999 260 GCNSF 264 (274)
Q Consensus 260 g~~~~ 264 (274)
|+...
T Consensus 248 g~~~~ 252 (439)
T 3m9v_A 248 RNDAV 252 (439)
T ss_dssp CCGGG
T ss_pred hHHHH
Confidence 76543
No 31
>2wbi_A Acyl-COA dehydrogenase family member 11; human, phosphoprotein, oxidoreducta; HET: FAD; 2.80A {Homo sapiens}
Probab=100.00 E-value=5.6e-39 Score=295.26 Aligned_cols=233 Identities=21% Similarity=0.317 Sum_probs=195.8
Q ss_pred CCCCHHHHHHHHHHHHHHHHhhcCcchh---chhcc-----CCCC---CcHHHHHHHHhcCCcCCCCCccCCCCCCCHHH
Q 023999 29 SLLFDDTQLQFKESVGQFARENIAPRAA---NIDQS-----NSFP---QDVNLWKLMGNFNLHGITAPQEYGGLGLGYLY 97 (274)
Q Consensus 29 ~~~s~~~~~~l~~~~~~~~~~~~~~~~~---~~~~~-----~~~~---~~~~~~~~l~~~G~~~l~vPe~~GG~g~~~~~ 97 (274)
..++++++ ++++.+++|+++.+.|... +.++. ..++ ...++|+++.+.||+++.+|+ |.|+++.+
T Consensus 21 ~~~~~e~~-~l~~~~r~f~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gl~~l~~P~---G~g~~~~~ 96 (428)
T 2wbi_A 21 FVQTRKGQ-EVLIKVKHFMKQHILPAEKEVTEFYVQNENSVDKWGKPLVIDKLKEMAKVEGLWNLFLPA---VSGLSHVD 96 (428)
T ss_dssp -CCCHHHH-HHHHHHHHHHHHTHHHHHHHHHC----------CCSCCHHHHHHHHHHHHTTCCSTTCHH---HHCCCHHH
T ss_pred CCCCHHHH-HHHHHHHHHHHhhCCchhcchhHHhhhccccccccCCcccHHHHHHHHHHCCCCeecCCC---CCCCCHHH
Confidence 46789999 9999999999998866554 44322 2332 123899999999999999999 88999999
Q ss_pred HHHHHHHHHhhcCc-chhhhhhhhHHHHHHHHhcCCHHHHHHHhHHHhcCCceEEEEeeCCC-CCCCCCCceEEEEEeCC
Q 023999 98 HCIAMEEISRASGS-VGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPN-AGSDVVGMKCKADRVDG 175 (274)
Q Consensus 98 ~~~v~e~lg~~~~~-~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~G~~~~~~a~te~~-~g~d~~~~~~~a~~~~~ 175 (274)
.+.++|++++++.+ .++.+..+...+...|..+|+++||++|++++++|++++++++|||+ +|+|+..+.|+|++++|
T Consensus 97 ~~~v~eel~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~qk~~~l~~l~~G~~~~~~a~tEp~~aGsd~~~~~t~A~~~~~ 176 (428)
T 2wbi_A 97 YALIAEETGKCFFAPDVFNCQAPDTGNMEVLHLYGSEEQKKQWLEPLLQGNITSCFCMTEPDVASSDATNIECSIQRDED 176 (428)
T ss_dssp HHHHHHHHTTSTTHHHHTTCCTTHHHHHHHHHHHCCHHHHHHTHHHHHHTSSEEEEECCCTTSCTTSGGGCCCEEEEETT
T ss_pred HHHHHHHHHhhcchhhhHhhhccchhHHHHHHHhCCHHHHHHHHHHHhCCCeEEEEEEecCCcCCCCcccceEEEEEeCC
Confidence 99999999998743 33322222224566788899999999999999999999999999999 99999999999999999
Q ss_pred eEEEeeEeecccCCCC--CCEEEEEEEeCCCC--CCCCeEEEEEeCCCCCeEEeccCcccCCCCCc---eeeEEeceeee
Q 023999 176 GYIINGNKMWCTNGPV--AQTLVVYAKTDIKA--GSKGITAFIIEKGMPGFSTAQKLDKLGMRGSD---TCELVFENCFV 248 (274)
Q Consensus 176 g~~l~G~k~~vs~~~~--a~~~lv~a~~~~~~--~~~~~~~~lv~~~~~gv~~~~~~~~~Gl~~~~---~~~v~f~~v~V 248 (274)
||+|||+|.|+||+.. ||+++|+|+++++. +.+++++|+||++.|||++.++|+++|+++++ +++|.|+||+|
T Consensus 177 g~~lnG~K~~is~a~~~~Ad~~~v~art~~~~~~~~~g~~~flV~~~~pGv~v~~~~~~~G~~~~~~~~~~~v~fddv~V 256 (428)
T 2wbi_A 177 SYVINGKKWWSSGAGNPKCKIAIVLGRTQNTSLSRHKQHSMILVPMNTPGVKIIRPLSVFGYTDNFHGGHFEIHFNQVRV 256 (428)
T ss_dssp EEEEEEEEEEEETTTSTTEEEEEEEEECCCTTSCGGGCEEEEEEETTSTTEEEEEECCBTTBCCGGGCCEEEEEEEEEEE
T ss_pred EEEEEeEEeccCCCCCCcCCEEEEEEEeCCccCCCCCceEEEEEECCCCcEEecCCCCccccCCCCCCCeEEEEeCceEE
Confidence 9999999999999987 99999999976432 33468899999999999999999999999985 99999999999
Q ss_pred CCCCcccCCCccccccc
Q 023999 249 PNENVLGQEGKGCNSFG 265 (274)
Q Consensus 249 p~~~llg~~g~g~~~~~ 265 (274)
|++++||.+++|+.+++
T Consensus 257 P~~~~lg~~g~g~~~~~ 273 (428)
T 2wbi_A 257 PATNLILGEGRGFEISQ 273 (428)
T ss_dssp EGGGBCSCTTCHHHHHH
T ss_pred CHHHhcCCccchHHHHH
Confidence 99999999998887654
No 32
>2or0_A Hydroxylase; APC7385, rhodococcus SP. RHA1, structu genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; HET: MSE; 2.10A {Rhodococcus SP}
Probab=100.00 E-value=8.5e-37 Score=279.53 Aligned_cols=209 Identities=18% Similarity=0.270 Sum_probs=179.7
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhhcCcchhchhccCCCCCcHHHHHHHHhcCCcCCCCCccCCCCCCCHHHHHHHHHHHHh
Q 023999 28 TSLLFDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAMEEISR 107 (274)
Q Consensus 28 ~~~~s~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~~l~vPe~~GG~g~~~~~~~~v~e~lg~ 107 (274)
.+.++++++ ++++.+++|+.+ +.+.+.+.|+.+.+|. ++|++|.+.||+++.+|++|||.|+++.+.+.++|++++
T Consensus 15 ~~~~~~~~~-~l~~~~r~~~~~-~~~~a~~~d~~~~~p~--~~~~~l~~~Gl~~l~~P~e~GG~g~~~~~~~~v~eela~ 90 (414)
T 2or0_A 15 ENLYFQGMG-RVLDRIEVVAEE-IRGQAVQSEADCRLTD--AAAGLLRDSGAIRLLQPRLYGGYEVHPREFAETVMGVAA 90 (414)
T ss_dssp --------C-HHHHHHHHTHHH-HHHHHHHHHHHTSCCH--HHHHHHHHHTGGGTTSCGGGTCCCCCHHHHHHHHHHHHH
T ss_pred cCCCCccHH-HHHHHHHHHHHH-HHHhHHHHHhcCCCCH--HHHHHHHHCCCchhcCchhhCCCCCCHHHHHHHHHHHHh
Confidence 456788899 999999999875 7777777888888999 999999999999999999999999999999999999999
Q ss_pred hcCcchhhhhhhhHHHHHHHHhcCCHHHHHHHhHHHhcCCceEEEEeeCCCCCCCCCCceEEEEEeCCeEEEeeEeeccc
Q 023999 108 ASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCT 187 (274)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~G~~~~~~a~te~~~g~d~~~~~~~a~~~~~g~~l~G~k~~vs 187 (274)
+++++++.+..+. .+...+..+|+++||++|++ +|+.+++++++ | .++|++++|||+|||+|.|+|
T Consensus 91 ~~~~~~~~~~~~~-~~~~~l~~~g~~~q~~~~l~---~g~~~~a~a~t-p---------~t~A~~~~~g~~lnG~K~~is 156 (414)
T 2or0_A 91 LDGASGWVTGIVG-VHPWELAFADPQVQEEIWGE---DNDTWMASPYA-P---------MGVATPVDGGYVLKGRWSFSS 156 (414)
T ss_dssp HCHHHHHHHHHHT-THHHHHTTSCHHHHHHHHSS---CTTCCEECCCS-C---------CEEEEEETTEEEEEEEEEEET
T ss_pred hChHHHHHHHHHH-HHHHHHHhCCHHHHHHHHcc---CCCeEEEeccC-C---------CceeEEECCeEEEEeeEeccC
Confidence 9999887666665 66677889999999999998 68988898887 4 578999999999999999999
Q ss_pred CCCCCCEEEEEEEeCCCCCCC---CeEEEEEeCCCCCeEEe-ccCcccCCCCCceeeEEeceeeeCCCCcccC
Q 023999 188 NGPVAQTLVVYAKTDIKAGSK---GITAFIIEKGMPGFSTA-QKLDKLGMRGSDTCELVFENCFVPNENVLGQ 256 (274)
Q Consensus 188 ~~~~a~~~lv~a~~~~~~~~~---~~~~~lv~~~~~gv~~~-~~~~~~Gl~~~~~~~v~f~~v~Vp~~~llg~ 256 (274)
|+..||+++|+++.+++++.+ ++.+|+||++ ||++. +.|+++|++++++++|.|+||+||++++|+.
T Consensus 157 ~a~~Ad~~~v~a~~~~~~g~~~~~g~~~flV~~~--gv~v~~~~~~~~G~r~~~~~~v~fd~v~VP~~~~lg~ 227 (414)
T 2or0_A 157 GTDHCQWAFLGAMVGDGEGGIATPSSLHVILPRT--DYQIVEDTWDVIGLRGTGSKDLIVDGAFVPGYRTLNA 227 (414)
T ss_dssp TGGGCSEEEEEEEECC-----CCCSEEEEEEEGG--GCEEETTCCCBSSCGGGCCEEEEEEEEEEEGGGEEEH
T ss_pred CCchhhEEEEEEEecCCCCCcccceeEEEEEEhh--hcEEecCCCccccCcccCCCcEEEccEEecHHHeecc
Confidence 999999999999986433333 7899999996 89998 8899999999999999999999999999976
No 33
>2jbr_A P-hydroxyphenylacetate hydroxylase C2 oxygenase C; flavoenzyme hydroxylase, oxidoreductase; 2.3A {Acinetobacter baumannii} PDB: 2jbs_A* 2jbt_A*
Probab=100.00 E-value=1.5e-35 Score=271.85 Aligned_cols=208 Identities=19% Similarity=0.283 Sum_probs=183.4
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhhcCcchhchhccCCCCCcHHHHHHHHhcCCcCCCCCccCCCCCCCHHHHHHHHHHHHh
Q 023999 28 TSLLFDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAMEEISR 107 (274)
Q Consensus 28 ~~~~s~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~~l~vPe~~GG~g~~~~~~~~v~e~lg~ 107 (274)
...+++ . ++++.+++|+. .+.+.+.+.|+.+.+|. ++|+.|.+.||+++.+|++|||.|+++.+.+.++|++++
T Consensus 32 ~~~~~~--~-~l~~~~r~~~~-~~~~~a~~~d~~~~~p~--~~~~~l~~~Gl~~l~~P~e~GG~g~~~~~~~~v~eela~ 105 (422)
T 2jbr_A 32 TPDVSG--V-SMLEKIQQILP-QIAKNAESAEQLRRVPD--ENIKLLKEIGLHRAFQPKVYGGLEMSLPDFANCIVTLAG 105 (422)
T ss_dssp CCCCSS--C-CHHHHHHHHHH-HHHHTHHHHHHHTSCCH--HHHHHHHHTTGGGSSSCGGGTCCCCCHHHHHHHHHHHHH
T ss_pred CCCCCH--H-HHHHHHHHHHH-HHHHhhHHHHHcCCCCH--HHHHHHHHCCchhcCCchhcCCCCCCHHHHHHHHHHHHh
Confidence 344544 4 78999999987 57777777888888999 999999999999999999999999999999999999999
Q ss_pred hcCcchhhhhhhhHHHHHHHHhcCCHHHHHHHhHHHhcCCceEEEEeeCCCCCCCCCCceEEEEEeCCeEEEeeEeeccc
Q 023999 108 ASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCT 187 (274)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~G~~~~~~a~te~~~g~d~~~~~~~a~~~~~g~~l~G~k~~vs 187 (274)
+++++++.+..+. .+...+..+|+++||++|++. |+.+.+++++ | .++|++++|||+|||+|.|+|
T Consensus 106 ~~~~~~~~~~~~~-~~~~~l~~~g~~~q~~~~l~~---g~~~~a~a~t-p---------~t~A~~~~~g~~lnG~K~~is 171 (422)
T 2jbr_A 106 ACAGTAWAFSLLC-THSHQIAMFSKQLQDEIWLKD---PDATASSSIA-P---------FGKVEEVEGGIILNGDYGWSS 171 (422)
T ss_dssp HCHHHHHHHHHHH-HHHHHHTTSCHHHHHHHHTTC---TTCCEEEECS-C---------CSEEEEETTEEEEEEEEEEET
T ss_pred hCcCHHHHHHHHH-HHHHHHHhCCHHHHHHHHccC---CCeEEEeecC-C---------CeeEEEeCCEEEEeeeEeeec
Confidence 9999887666554 667788899999999999986 8888899887 3 468999999999999999999
Q ss_pred CCCCCCEEEEEEEeCCCCCCCCeEEEEEeCCCCCeEEeccCcccCCCCCceeeEEeceeeeCCCCcccCC
Q 023999 188 NGPVAQTLVVYAKTDIKAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQE 257 (274)
Q Consensus 188 ~~~~a~~~lv~a~~~~~~~~~~~~~~lv~~~~~gv~~~~~~~~~Gl~~~~~~~v~f~~v~Vp~~~llg~~ 257 (274)
|+..||+++|+++.+++++.+++++|+||++ ||++.+.|+++|++++++++|.|+||+||++++||.+
T Consensus 172 ~a~~Ad~~~v~a~~~~~~g~~g~~~flV~~~--gv~v~~~~~~~G~r~~~~~~v~fddv~VP~~~~lg~~ 239 (422)
T 2jbr_A 172 GCDHAEYAIVGFNRFDADGNKIYSFGVIPRS--DYEIVDNWYAQAIKSSGSKMLKLVNVFIPEYRISKAK 239 (422)
T ss_dssp TGGGCSEEEEEEEEECTTSCEEEEEEEEEGG--GCEEECCCCBSSSGGGCCEEEEEEEEEEEGGGEEEHH
T ss_pred CCccccEEEEEEEecCCCCCceeEEEEEEcC--ceEEeCCccccCcCCCCCCcEEEeeEEecHHHeeccc
Confidence 9999999999999864334457889999997 8999888999999999999999999999999999875
No 34
>2rfq_A 3-HSA hydroxylase, oxygenase; rhodococcus SP. RHA1, structural genomics protein structure initiative, midwest center for structural genomics, MCSG; HET: 1PS; 1.65A {Rhodococcus SP} PDB: 3aff_A 3afe_A
Probab=100.00 E-value=3.9e-35 Score=266.75 Aligned_cols=200 Identities=20% Similarity=0.329 Sum_probs=178.4
Q ss_pred HHHHHHHHHHHhhcCcchhchhccCCCCCcHHHHHHHHhcCCcCCCCCccCCCCCCCHHHHHHHHHHHHhhcCcchhhhh
Q 023999 38 QFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAMEEISRASGSVGLSYG 117 (274)
Q Consensus 38 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~~l~vPe~~GG~g~~~~~~~~v~e~lg~~~~~~~~~~~ 117 (274)
++++++++|+.+ +.+.+.+.|+.+.+|. ++|+.|.+.||+++.+|++|||.|+++.+.+.++|+++++++++++.+.
T Consensus 11 ~l~~~~~~~~~~-~~~~~~~~d~~~~~p~--~~~~~l~~~Gl~~~~~P~~~GG~g~~~~~~~~v~eela~~~~~~~~~~~ 87 (394)
T 2rfq_A 11 EVMQRLDALLPT-LRERAQETEDLRRIPD--DSMKALQETGFFRLLQPEQWGGYQADPVLFYSAVRKIASACGSTGWVSS 87 (394)
T ss_dssp HHHHHHHHHHHH-HHHTHHHHHHHTSCCH--HHHHHHHHHTGGGTTSCGGGTCCCCCHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHH-HHHhHHHHHhcCCCCH--HHHHHHHHCCCceecCchhhCCCCCCHHHHHHHHHHHHhhChhHHHHHH
Confidence 689999999864 7777777888888999 9999999999999999999999999999999999999999999887766
Q ss_pred hhhHHHHHHHHhcCCHHHHHHHhHHHhcCCceEEEEeeCCCCCCCCCCceEEEEEeCCeEEEeeEeecccCCCCCCEEEE
Q 023999 118 AHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVV 197 (274)
Q Consensus 118 ~~~~~~~~~l~~~g~~~q~~~~l~~~~~G~~~~~~a~te~~~g~d~~~~~~~a~~~~~g~~l~G~k~~vs~~~~a~~~lv 197 (274)
.+. .+...+..+|+++||++|++ +|+.+.+++++ | .++|++++|||+|||+|.|+||+..||+++|
T Consensus 88 ~~~-~~~~~l~~~g~~~q~~~~l~---~g~~~~~~a~t-p---------~t~A~~~~~g~~lnG~K~~is~a~~Ad~~~v 153 (394)
T 2rfq_A 88 IIG-VHNWHLALFSQQAQEDVWGN---DTDVRISSSYA-P---------MGAGQVVDGGYTVNGAWAWSSGCDHASWAVL 153 (394)
T ss_dssp HHH-HHHHHHTTSCHHHHHHHHSS---CTTCCEEEECS-C---------SEEEEEETTEEEEEEEEEEETTGGGCSEEEE
T ss_pred HHH-HHHHHHHhCCHHHHHHHhCC---CCCeEEEeccC-C---------CceEEEeCCeEEEeeeEeccCCCcccceEEE
Confidence 665 66777888999999999998 68888899987 3 4789999999999999999999999999999
Q ss_pred EEEeCCCCCCCCeEEEEEeCCCCCeEEeccCcccCCCCCceeeEEeceeeeCCCCcccC
Q 023999 198 YAKTDIKAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQ 256 (274)
Q Consensus 198 ~a~~~~~~~~~~~~~~lv~~~~~gv~~~~~~~~~Gl~~~~~~~v~f~~v~Vp~~~llg~ 256 (274)
+++.+++.+.+++++|+||++ ||++.+.|+++|++++++++|.|+||+||++++|+.
T Consensus 154 ~a~~~~~g~~~~~~~flV~~~--gv~v~~~~~~~G~~~~~~~~v~fd~v~Vp~~~~lg~ 210 (394)
T 2rfq_A 154 GGPVIKDGRPVDFVSFLIPRE--DYRIDDVWNVVGLRGTGSNTVVVEDVFVPTHRVLSF 210 (394)
T ss_dssp EEEEEETTEEEEEEEEEEEGG--GCEEECCCCBSSCGGGCCEEEEEEEEEEEGGGEEEH
T ss_pred eeeecCCCCCCceeEEEEEhh--hcEEeCCccccccccCCCCceEEcceEcChHHhccc
Confidence 999742211236889999996 899988899999999999999999999999999975
No 35
>1w07_A Acyl-COA oxidase; oxidoreductase, peroxisomal beta-oxidation, FAD cofactor; HET: FAD; 2.0A {Arabidopsis thaliana} SCOP: a.29.3.2 a.29.3.2 e.6.1.2 PDB: 2fon_A*
Probab=99.97 E-value=1.1e-30 Score=251.39 Aligned_cols=218 Identities=18% Similarity=0.230 Sum_probs=177.9
Q ss_pred CHHHHHHHHHHHHHHHHhhcCcchhchhccCCCCCcHHHHHHHHhcCCcCCCCCccCCCCCCCHHHHHHHHHHHHhhcCc
Q 023999 32 FDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAMEEISRASGS 111 (274)
Q Consensus 32 s~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~~l~vPe~~GG~g~~~~~~~~v~e~lg~~~~~ 111 (274)
++++. ++++++++|+.+.... ....+....++. +.|+.+++.|++.. +|+++| .+..+...+.|+++ .+
T Consensus 28 ~~e~~-~lr~~vr~~l~~~~~~-~~~~~~~~~~~~--~~~~~l~~~g~l~~-~p~e~G---~~~~~~~~v~e~~~---~~ 96 (659)
T 1w07_A 28 SRHAF-EVSDRIARLVASDPVF-EKSNRARLSRKE--LFKSTLRKCAHAFK-RIIELR---LNEEEAGRLRHFID---QP 96 (659)
T ss_dssp SHHHH-HHHHHHHHHHHTCGGG-CCTTTTSSCHHH--HHHHHHHHHHHHHH-HHHHTT---CCHHHHHHHHHHHC---CC
T ss_pred ChHHH-HHHHHHHHHHhcCccc-ccCCccCCChHH--HHHHHHHHHHHHHH-hHHHhC---CCchHHHHHHHHhc---cc
Confidence 36777 9999999999876322 111111223455 89999999988875 788887 45678777767664 34
Q ss_pred chhhhhhhhHHHHHHHHhcCCHHHHHHHhHHHhcCCceEEEEeeCCCCCCCCCCceEEEEEe--CCeEEEe-----eEee
Q 023999 112 VGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRV--DGGYIIN-----GNKM 184 (274)
Q Consensus 112 ~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~G~~~~~~a~te~~~g~d~~~~~~~a~~~--~~g~~l~-----G~k~ 184 (274)
++ +..|..++...|..+|+++|+++|++++++|++++|+++|||++|+|+.+++|+|+++ +|+|+|| |+|.
T Consensus 97 ~~--~~~~~~l~~~~l~~~Gt~eqk~~~L~~i~~Ge~~~~~a~TEp~~GSd~~~l~TtA~~d~~~~g~vLntP~~~G~K~ 174 (659)
T 1w07_A 97 AY--VDLHWGMFVPAIKGQGTEEQQKKWLSLANKMQIIGCYAQTELGHGSNVQGLETTATLDPKTDEFVIHTPTQTASKW 174 (659)
T ss_dssp CH--HHHHHHTHHHHHHHHSCHHHHHHHHHHHHTTSSCEEEECCBTTBSSCGGGCCCEEEEETTTTEEEEECCSGGGSEE
T ss_pred hh--hhhHHhHHHHHHHHcCCHHHHHHHhhHHhcCCEEEEEEecCCCCCCCcccceeEEEEcCCCCEEEEcCCCCCeEEE
Confidence 43 4555435667888899999999999999999999999999999999999999999998 6889999 9999
Q ss_pred cccC-CCCCCEEEEEEEeCCCCCCCCeEEEEEeC-C------CCCeEEeccCcccC---CCCCceeeEEeceeeeCCCCc
Q 023999 185 WCTN-GPVAQTLVVYAKTDIKAGSKGITAFIIEK-G------MPGFSTAQKLDKLG---MRGSDTCELVFENCFVPNENV 253 (274)
Q Consensus 185 ~vs~-~~~a~~~lv~a~~~~~~~~~~~~~~lv~~-~------~~gv~~~~~~~~~G---l~~~~~~~v~f~~v~Vp~~~l 253 (274)
|++| +..||+++|+|+..++++..++.+|+||. + .|||++.+.|+++| +++++++.|.|+||+||++++
T Consensus 175 ~is~~a~~Ad~~lV~Ar~~~~~~~~G~~~flVp~r~~~~~~~~pGV~v~~~~~~~G~~~~~g~~~~~v~fd~VrVP~~~l 254 (659)
T 1w07_A 175 WPGGLGKVSTHAVVYARLITNGKDYGIHGFIVQLRSLEDHSPLPNITVGDIGTKMGNGAYNSMDNGFLMFDHVRIPRDQM 254 (659)
T ss_dssp CCTTTTTTCSEEEEEEEEEETTEEEEEEEEEEECBCTTTCCBCTTEEEEECCCBSSSSGGGGSCCEEEEESSEEEEGGGB
T ss_pred eecCCCCCCCEEEEEEEECCCCCCCCeEEEEEEccccCCCCCCCCeEEecCccCccccccCCCCceEEEeccEEECHHHh
Confidence 9999 89999999999986433344788999995 4 69999999999999 999999999999999999999
Q ss_pred ccC------CCcccc
Q 023999 254 LGQ------EGKGCN 262 (274)
Q Consensus 254 lg~------~g~g~~ 262 (274)
||. +|.++.
T Consensus 255 Lg~~~~v~~~g~~~~ 269 (659)
T 1w07_A 255 LMRLSKVTREGEYVP 269 (659)
T ss_dssp CCSSEEECTTCCEEE
T ss_pred cCCcCccCCCCceec
Confidence 986 666654
No 36
>3djl_A Protein AIDB; alpha helix, beta-barrel, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.70A {Escherichia coli} PDB: 3u33_A*
Probab=99.95 E-value=1.9e-28 Score=230.43 Aligned_cols=185 Identities=22% Similarity=0.332 Sum_probs=155.8
Q ss_pred cHHHHHHHHhcCCcCCCC--CccCCCCCCCHHHHHHHHHHHHhhcCcchhhhhhhhHHHHHHHHhcCCHHHHHHHhHHHh
Q 023999 67 DVNLWKLMGNFNLHGITA--PQEYGGLGLGYLYHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLI 144 (274)
Q Consensus 67 ~~~~~~~l~~~G~~~l~v--Pe~~GG~g~~~~~~~~v~e~lg~~~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~ 144 (274)
+.++++.+.+.||+++.+ |+++||.+.... ....++..+.....+..++. .+...|..++ ++||++|+++++
T Consensus 88 ~~~~~~~l~e~Gl~~l~~~~p~~~Gg~~~~~~----~~~~~~~~~~~~~~p~~~t~-~~~~~L~~~g-~eqk~~~lp~l~ 161 (541)
T 3djl_A 88 WHLLMQALCTNRVHNLAWEEDARSGAFVARAA----RFMLHAQVEAGSLCPITMTF-AATPLLLQML-PAPFQDWTTPLL 161 (541)
T ss_dssp HHHHHHHHHHTTTTTGGGSTTCCTTHHHHHHH----HHHHHHHHCSTTHHHHHHHH-HHHHHHHHHC-CGGGGGGHHHHT
T ss_pred HHHHHHHHHhCCcccCCCCCCCCCCcHHHHHH----HHHHHHHHHHhhhcHHHHHH-HHHHHHHHcC-HHHHHHHHHHHh
Confidence 468999999999999999 689996544333 33333334444444444444 4556677788 999999999999
Q ss_pred cCCc-------------eEEEEeeCCCCCCCCCCceEEEEEe-CCeEEEeeEeecccCCCCCCEEEEEEEeCCCCCCCCe
Q 023999 145 SGEH-------------VGALAMSEPNAGSDVVGMKCKADRV-DGGYIINGNKMWCTNGPVAQTLVVYAKTDIKAGSKGI 210 (274)
Q Consensus 145 ~G~~-------------~~~~a~te~~~g~d~~~~~~~a~~~-~~g~~l~G~k~~vs~~~~a~~~lv~a~~~~~~~~~~~ 210 (274)
+|++ +.++++|||++|+|+..++|+|+++ +|+|+|||+|.|+| +..||+++|+|+.+ +++
T Consensus 162 sge~~p~~~~~~~~~g~~~~~a~TEp~~GSDl~~~~T~A~~~~~g~y~LnG~K~f~S-a~~Ad~~lVlArt~-----~Gi 235 (541)
T 3djl_A 162 SDRYDSHLLPGGQKRGLLIGMGMTEKQGGSDVMSNTTRAERLEDGSYRLVGHKWFFS-VPQSDAHLVLAQTA-----GGL 235 (541)
T ss_dssp CSCCCCCSSCGGGSSSCCEEEECCBTTBSSCGGGCCCEEEECTTSCEEEEEEEEEEE-CTTSSEEEEEEEET-----TEE
T ss_pred CCCcccccccccccccceeEEEeccCCcCCCcccceeEEEEcCCCeEEEEEEEEeec-ccccCEEEEEEEEC-----Cce
Confidence 9998 7899999999999999999999999 78899999999999 89999999999985 378
Q ss_pred EEEEEeCCCC-----CeEEeccCcccCCCCCceeeEEeceeeeCCCCcccCCCcccccccC
Q 023999 211 TAFIIEKGMP-----GFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGCNSFGE 266 (274)
Q Consensus 211 ~~~lv~~~~~-----gv~~~~~~~~~Gl~~~~~~~v~f~~v~Vp~~~llg~~g~g~~~~~~ 266 (274)
++|+||++.| ||++.+.|+++|++++++++|.|+||+ +++||.+++|+.++..
T Consensus 236 s~flVp~~~p~~~~~Gv~i~~~~~~~G~rgt~s~~v~fddv~---~~llG~~g~G~~~~~~ 293 (541)
T 3djl_A 236 SCFFVPRFLPDGQRNAIRLERLKDKLGNRSNASCEVEFQDAI---GWLLGLEGEGIRLILK 293 (541)
T ss_dssp EEEEEESBCTTSCBCSEEEEEECCCSSCTTSCEEEEEEEEEE---EEEESSTTCHHHHTHH
T ss_pred EEEEEecCCCCCCcCCeEEeeccccCCCcCCceeEEEEccce---eeeeecCCchHHHHHH
Confidence 9999999988 999999999999999999999999996 8999999999876543
No 37
>2ddh_A Acyl-COA oxidase; beta barrel, alpha UP-DOWN bundle, oxidoreductase; HET: FAD HXD; 2.07A {Rattus norvegicus} SCOP: a.29.3.2 a.29.3.2 e.6.1.2 PDB: 1is2_A*
Probab=99.94 E-value=6.1e-26 Score=218.15 Aligned_cols=210 Identities=18% Similarity=0.271 Sum_probs=160.1
Q ss_pred CHHHHHHHHHHHHHHHHhhcCcchhchhccCCCCC------cHHHHHHHHhcCCcCCCCCccCCCCCCCHHHHHHHHHHH
Q 023999 32 FDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQ------DVNLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAMEEI 105 (274)
Q Consensus 32 s~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~l~~~G~~~l~vPe~~GG~g~~~~~~~~v~e~l 105 (274)
+++.. ++++++++++.+. |........ .+.. ..+..+.+.+. | +++||.+ ..+. .+.+++
T Consensus 26 ~~~~~-~~r~~~~~~l~~~--p~~~~~~~~-~~~~~e~~~~~~~~~~~l~~~-~------~~~~~~~--~~~~-~~~~~~ 91 (661)
T 2ddh_A 26 SPENT-RRRREIENLILND--PDFQHEDYN-FLTRSQRYEVAVKKSATMVKK-M------REYGISD--PEEI-MWFKNS 91 (661)
T ss_dssp SHHHH-HHHHHHHHHHHTC--GGGCCSCGG-GSCHHHHHHHHHHHHHHHHHH-H------HHTTCCC--HHHH-HHHHHH
T ss_pred ChhHH-HHHHHHHHHHhcC--cccccCCcC-CCCHHHHHHHHHHHHHHHHHH-H------HHcCCCC--chHH-HHHHHH
Confidence 45666 8999999998765 322111110 0111 01222344443 2 5677765 3333 336666
Q ss_pred HhhcCcchhhhhhhhHHHHHHHHhcCCHHHHHHHhHHHhcCCceEEEEeeCCCCCCCCCCceEEEEEe--CCeEEEe---
Q 023999 106 SRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRV--DGGYIIN--- 180 (274)
Q Consensus 106 g~~~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~G~~~~~~a~te~~~g~d~~~~~~~a~~~--~~g~~l~--- 180 (274)
.....+ ..+..|..++...|..+|+++|+++|++++++|++++|+++|||++|+|+.+++|+|+++ +|+|+||
T Consensus 92 ~~~~~~--~~~~~h~~l~~~~i~~~Gt~eq~~~~L~~i~~Ge~~g~~a~TE~g~GSd~~~l~TtA~~d~~~~~~vLntP~ 169 (661)
T 2ddh_A 92 VHRGHP--EPLDLHLGMFLPTLLHQATAEQQERFFMPAWNLEITGTYAQTEMGHGTHLRGLETTATYDPKTQEFILNSPT 169 (661)
T ss_dssp HHTTCC--CTTHHHHHTHHHHHC-CCCHHHHHHHHHHHHTTSSCEEEECCBTTBSSCGGGCCCEEEEETTTTEEEEECCS
T ss_pred hccchh--hHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhCCCeeEEEeeccCCcCcCcccceeEEEEcCCCCeEEEcCCC
Confidence 654333 335556445677888999999999999999999999999999999999999999999998 7899999
Q ss_pred --eEeecccC-CCCCCEEEEEEEeCCCCCCCCeEEEEEeC-C------CCCeEEeccCcccCCCCCceeeEEeceeeeCC
Q 023999 181 --GNKMWCTN-GPVAQTLVVYAKTDIKAGSKGITAFIIEK-G------MPGFSTAQKLDKLGMRGSDTCELVFENCFVPN 250 (274)
Q Consensus 181 --G~k~~vs~-~~~a~~~lv~a~~~~~~~~~~~~~~lv~~-~------~~gv~~~~~~~~~Gl~~~~~~~v~f~~v~Vp~ 250 (274)
|+|.|++| +..||+++|+|+..++++..++.+|+||. + .|||++.+.|+++|+++++++.+.|+||+||+
T Consensus 170 ~~G~K~wis~~a~~Ad~~vV~Ar~~~~~~~~G~~~FlVp~rd~~~~~~~pGV~v~~~~~k~Gl~g~~~~~v~Fd~VrVP~ 249 (661)
T 2ddh_A 170 VTSIKWWPGGLGKTSNHAIVLAQLITQGECYGLHAFVVPIREIGTHKPLPGITVGDIGPKFGYEEMDNGYLKMDNYRIPR 249 (661)
T ss_dssp STTSEECCTTTTTTCSEEEEEEEEEETTEEEEEEEEEEECBCTTTCCBCTTEEEEECCCCSSCTTCCCEEEEESSEEEEG
T ss_pred CCeEEEecCCCcccCCEEEEEEEEccCCCCCceEEEEEecccccCCCCCCCeEEecCcccccCCCCcceEEEeccEEECH
Confidence 99999999 88999999999986433345788999995 4 79999999999999999999999999999999
Q ss_pred CCcccCC
Q 023999 251 ENVLGQE 257 (274)
Q Consensus 251 ~~llg~~ 257 (274)
+++||..
T Consensus 250 ~~lLg~~ 256 (661)
T 2ddh_A 250 ENMLMKY 256 (661)
T ss_dssp GGBCCSS
T ss_pred HHhcCcc
Confidence 9999974
No 38
>1u8v_A Gamma-aminobutyrate metabolism dehydratase/isomerase; ALFA-helixes, beta-strands, lyase; HET: FAD; 1.60A {Clostridium aminobutyricum} SCOP: a.29.3.1 e.6.1.1
Probab=99.90 E-value=1.8e-23 Score=194.37 Aligned_cols=139 Identities=16% Similarity=0.261 Sum_probs=113.7
Q ss_pred HHHHhcCC--HHHHHHHhHHHhcCCceEEEEeeCCCCC--------CCC-CCceEEEEEeCCeEEEeeEeecccCCCCCC
Q 023999 125 NQLVRHGS--PAQKDKYLPKLISGEHVGALAMSEPNAG--------SDV-VGMKCKADRVDGGYIINGNKMWCTNGPVAQ 193 (274)
Q Consensus 125 ~~l~~~g~--~~q~~~~l~~~~~G~~~~~~a~te~~~g--------~d~-~~~~~~a~~~~~g~~l~G~k~~vs~~~~a~ 193 (274)
.++..+|+ ++||++||+++++|+++.++++|||+.+ +|+ ..++ ++++++|||+|||+|.|+||+..||
T Consensus 118 ~~~~~~Gt~~~eqk~~~L~~l~~Ge~~~a~a~TEP~~~rs~~~~~gSD~~~~~~-~a~r~gdg~vlnG~K~~iT~a~~Ad 196 (490)
T 1u8v_A 118 EIDQKYGTNYHKNFTEYLKYIQENDLIVDGAMTDPKGDRGLAPSAQKDPDLFLR-IVEKREDGIVVRGAKAHQTGSINSH 196 (490)
T ss_dssp HHHHHHCCCHHHHHHHHHHHHHHHTCCEEEECCCCCSCTTSCGGGCSSTTSSCE-EEEECSSEEEEEEEECSCTTCTTCS
T ss_pred hHHHHhCCCHHHHHHHHHHHHHhCCceeeeeeeCCCCCCcccccccCCcccceE-EEEEECCEEEEEeEEEEeeCCcccC
Confidence 45568999 9999999999999999999999999864 664 3444 8889999999999999999999999
Q ss_pred EEEEEEEeCCCC-CCCCeEEEEEeCCCCCeEEec---cCcc----------cCC-CC-CceeeEEeceeeeCCCCcc--c
Q 023999 194 TLVVYAKTDIKA-GSKGITAFIIEKGMPGFSTAQ---KLDK----------LGM-RG-SDTCELVFENCFVPNENVL--G 255 (274)
Q Consensus 194 ~~lv~a~~~~~~-~~~~~~~~lv~~~~~gv~~~~---~~~~----------~Gl-~~-~~~~~v~f~~v~Vp~~~ll--g 255 (274)
+++|+++++.++ ..+..++|+||++.|||++.+ .+.+ +|+ +. .+.+.|.|+||+||++++| |
T Consensus 197 ~~iV~art~~~~~~~~~~s~flVp~d~pGv~v~~~r~~~~~~~~~~~~d~~lg~~r~~~~~~~v~FddV~VP~e~vl~~g 276 (490)
T 1u8v_A 197 EHIIMPTIAMTEADKDYAVSFACPSDADGLFMIYGRQSCDTRKMEEGADIDLGNKQFGGQEALVVFDNVFIPNDRIFLCQ 276 (490)
T ss_dssp EEEECCSSCCCGGGGGGCEEEEEETTCTTEEEEECCCTTGGGGGSTTCCGGGSSSSCCCCCEEEEEEEEEEEGGGEEEES
T ss_pred EEEEEEecCCCCCCCCeEEEEEEECCCCCEEEEecccccccccccccccCCccccccCCceEEEEECceEeCHHHccCCC
Confidence 999999875321 223478999999999999953 3433 566 53 5678899999999999998 6
Q ss_pred CCCcccccc
Q 023999 256 QEGKGCNSF 264 (274)
Q Consensus 256 ~~g~g~~~~ 264 (274)
..+.|+.++
T Consensus 277 ~~~~g~~~~ 285 (490)
T 1u8v_A 277 EYDFAGMMV 285 (490)
T ss_dssp CGGGHHHHH
T ss_pred ChhHHHHHH
Confidence 777776543
No 39
>2yyk_A 4-hydroxyphenylacetate-3-hydroxylase; structurome, riken spring-8 center, oxygnase component, 4- hydroxyphenylacetate 3-monooxygenase; 1.60A {Thermus thermophilus} PDB: 2yyl_A* 2yym_A* 2yyi_A* 2yyg_A* 2yyj_A*
Probab=99.86 E-value=1.2e-21 Score=181.81 Aligned_cols=130 Identities=22% Similarity=0.374 Sum_probs=104.9
Q ss_pred CHHHHHHHhHHHhcCCceEEEEeeCCCCC--------CCCCCceEEEE-EeCCeEEEeeEeecccCCCCCCEEEEEEEeC
Q 023999 132 SPAQKDKYLPKLISGEHVGALAMSEPNAG--------SDVVGMKCKAD-RVDGGYIINGNKMWCTNGPVAQTLVVYAKTD 202 (274)
Q Consensus 132 ~~~q~~~~l~~~~~G~~~~~~a~te~~~g--------~d~~~~~~~a~-~~~~g~~l~G~k~~vs~~~~a~~~lv~a~~~ 202 (274)
.++||++||+++++|+++.++++|||+.| +|+. +.++++ +++|||+|||+|.|+|| ..||+++|+++++
T Consensus 122 ~~eqk~~~L~~l~~Ge~~~a~a~TEP~~grs~~~s~gsd~~-~~~~~~~~~gdg~VlnG~K~~iT~-~~Ad~~iV~art~ 199 (481)
T 2yyk_A 122 FAENVRNYYRYLRDQDLATTHALTNPQVNRARPPSGQPDPY-IPVGVVKQTEKGIVVRGARMTATF-PLADEVLIFPSIL 199 (481)
T ss_dssp GHHHHHHHHHHHHHHTCCEEEEECCCCCCTTC----CCCSC-SBCEEEEECSSEEEEEEEEEEEEC-CCSSEEEECCCSC
T ss_pred HHHHHHHHHHHHHcCCeEEEEeeECCCCCCCCCccccCCcc-cceEEEEEECCEEEEEeEEEEecc-ccccEEEEEEecC
Confidence 36999999999999999999999999976 5654 455554 78999999999999999 9999999999975
Q ss_pred CCCC-CCCeEEEEEeCCCCCeEEec--cCcc--------cCCCC-CceeeEEeceeeeCCCCcc--cCCCccccc
Q 023999 203 IKAG-SKGITAFIIEKGMPGFSTAQ--KLDK--------LGMRG-SDTCELVFENCFVPNENVL--GQEGKGCNS 263 (274)
Q Consensus 203 ~~~~-~~~~~~~lv~~~~~gv~~~~--~~~~--------~Gl~~-~~~~~v~f~~v~Vp~~~ll--g~~g~g~~~ 263 (274)
++++ .++.++|+||++.|||++.. .+.. +|++. .+++.|.|+||+||++++| |.++.|+..
T Consensus 200 ~~~~~~~~~s~flVp~dtpGv~v~~r~~~~~~~s~~d~~lg~r~~~~~~~v~FddV~VP~e~vl~~G~~~~g~~~ 274 (481)
T 2yyk_A 200 LQAGSEKYALAFALPTSTPGLHFVCREALVGGDSPFDHPLSSRVEEMDCLVIFDDVLVPWERVFILGNVELCNNA 274 (481)
T ss_dssp CCTTCGGGCEEEEEETTCTTEEEEECCCCCCCSCTTTCTTTTTCCCCEEEEEEEEEEEEGGGEEEESCHHHHHHH
T ss_pred CCCCCCCeEEEEEEECCCCCEEEEeccccccCCccccccccccCCCCeEEEEEccEEECHHHccCCCCccHHHHH
Confidence 3222 23578999999999999953 3322 45564 6788999999999999998 666655533
No 40
>3hwc_A Chlorophenol-4-monooxygenase component 2; beta barrel, helix bundle, oxidoreductase; 2.50A {Burkholderia cepacia}
Probab=99.84 E-value=5.8e-21 Score=177.63 Aligned_cols=130 Identities=18% Similarity=0.235 Sum_probs=106.9
Q ss_pred HHHHHHHhHHHhcCCceEEEEeeCCCC--------CCCCCCceEEEEEeCCeEEEeeEeecccCCCCCCEEEEEEEeCC-
Q 023999 133 PAQKDKYLPKLISGEHVGALAMSEPNA--------GSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDI- 203 (274)
Q Consensus 133 ~~q~~~~l~~~~~G~~~~~~a~te~~~--------g~d~~~~~~~a~~~~~g~~l~G~k~~vs~~~~a~~~lv~a~~~~- 203 (274)
.+|+++||+++++|+++.++++|||.+ |+|+ .+++ +.+++|||+|||.|.|+||+..||+++|+++.++
T Consensus 132 ~eq~~~~L~~l~~Ge~~~a~AltEP~~~rs~~~~~GSD~-~~~~-~~~~gdg~VlnG~K~~iT~a~~Ad~~lV~a~t~~~ 209 (515)
T 3hwc_A 132 TQNIHNFLKLLREKDLNCPLNFVDPQTDRSSDAAQARSP-NLRI-VEKTDDGIIVNGVKAVGTGIAFGDYMHIGCLYRPG 209 (515)
T ss_dssp HHHHHHHHHHHHHTTCCCCEECCCCCCCCCSCTTTSCCS-BCEE-EEECSSEEEEEEEEEEEESGGGCSEEEECCCCCTT
T ss_pred HHHHHHHHHHHHcCCcEEEEEeeCCCCCcccccccCCCc-ceEE-EEEECCEEEEEEEEEEECCccccCEEEEEEEecCC
Confidence 688999999999999999999999986 4677 5443 3456899999999999999999999999998732
Q ss_pred CCCCCCeEEEEEeCCCCCeEEeccCcccCC-----C-----CCceeeEEeceeeeCCCCcc--cCCCccccccc
Q 023999 204 KAGSKGITAFIIEKGMPGFSTAQKLDKLGM-----R-----GSDTCELVFENCFVPNENVL--GQEGKGCNSFG 265 (274)
Q Consensus 204 ~~~~~~~~~~lv~~~~~gv~~~~~~~~~Gl-----~-----~~~~~~v~f~~v~Vp~~~ll--g~~g~g~~~~~ 265 (274)
.++++ +++|+||++.|||++...+..+|. + +..++.|.|+||+||++++| |..+.|+.+++
T Consensus 210 ~~~~~-~s~FlVp~d~pGv~v~~~~~~~G~~~~d~~ls~~~~~~~a~v~FddV~VP~e~vl~~Ge~g~g~~~~~ 282 (515)
T 3hwc_A 210 IPGEQ-VIFAAIPTNTPGVTVFCRESTVKNDPAEHPLASQGDELDSTTVFDNVFIPWEQVFHIGNPEHAKLYPQ 282 (515)
T ss_dssp CCGGG-CEEEEEETTCTTEEEEECCCCCCSCTTTCTTTTSCCCCEEEEEEEEEEEEGGGEEEESCTTGGGTHHH
T ss_pred CCCCe-EEEEEEECCCCCeEEeecccccCccccccccccccCCceEEEEECceEECHHHccCCCCccHHHHHHH
Confidence 22233 889999999999999776666552 2 23378899999999999999 88888887653
No 41
>4g5e_A 2,4,6-trichlorophenol 4-monooxygenase; oxidoreductase; 2.50A {Cupriavidus necator JMP134}
Probab=99.56 E-value=5.6e-15 Score=137.59 Aligned_cols=133 Identities=14% Similarity=0.094 Sum_probs=99.5
Q ss_pred HHHHHHHhHHHhcCCceEEEEeeCCCCCCCCC-----CceE-EEEEeCCeEEEeeEeecccCCCCCCEEEEEEEeCCCCC
Q 023999 133 PAQKDKYLPKLISGEHVGALAMSEPNAGSDVV-----GMKC-KADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKAG 206 (274)
Q Consensus 133 ~~q~~~~l~~~~~G~~~~~~a~te~~~g~d~~-----~~~~-~a~~~~~g~~l~G~k~~vs~~~~a~~~lv~a~~~~~~~ 206 (274)
.+...+|+..+.++++..+.++++|....... .+-. .+++++|||+|||.|.|+||+..||+++|+++..+..+
T Consensus 133 ~~n~~~y~~~~~~~DL~~~~a~~dPk~dRs~~~~~q~d~~l~Vve~~~dGiVVnGaK~~~T~a~~Ad~i~V~a~t~~~~~ 212 (517)
T 4g5e_A 133 AKNIVDFVNFAKKHDLNCAPQFVDPQMDRSNPDAQQRSPGLRVIEKNDKGIVVSGVKAIGTGVAFADWIHIGVFFRPGIP 212 (517)
T ss_dssp HHHHHHHHHHHHHHTCCEEEECCCCCC-----------CBCEEEEECSSEEEEEEEEEEEESGGGCSEEEECCCCCTTCC
T ss_pred HHHHHHHHHHHHhcCceeeeeeeCCCCCCCCCchhcCCCceEEEEEcCCeEEEeeEehhhcCccccCEEEEEeecCCCCC
Confidence 35667899999999999999999997432211 1112 35668899999999999999999999999998766545
Q ss_pred CCCeEEEEEeCCCCCeEEeccCcccCCC---------C-CceeeEEeceeeeCCCCcc--cCCCccccccc
Q 023999 207 SKGITAFIIEKGMPGFSTAQKLDKLGMR---------G-SDTCELVFENCFVPNENVL--GQEGKGCNSFG 265 (274)
Q Consensus 207 ~~~~~~~lv~~~~~gv~~~~~~~~~Gl~---------~-~~~~~v~f~~v~Vp~~~ll--g~~g~g~~~~~ 265 (274)
.+...+|+||.++|||++.......+.+ + ...+.|.|+||+||+++++ |+.+.+..+.+
T Consensus 213 ~d~~~~F~VP~dtPGv~~i~r~~~~~~~~~d~pl~~r~~e~da~vvFDdV~VP~e~Vf~~Ge~~~~~~~~~ 283 (517)
T 4g5e_A 213 GDQIIFAATPVNTPGVTIVCRESVVKEDPIEHPLASQGDELDGMTVFDNVFIPWSHVFHLGNPEHAKLYPQ 283 (517)
T ss_dssp GGGCEEEEEETTCTTEEEEECCCCCCSCTTTCTTGGGCCCCEEEEEEEEEEEEGGGEEEESCTTHHHHHHH
T ss_pred ccceEEEEEecCCCCeEEEecccccCCCccccccccccCCcceEEEecceeccHHHccccCChhHHHHHHH
Confidence 5567889999999999986443333222 2 2347799999999999976 77777665443
Done!