Query 024000
Match_columns 274
No_of_seqs 123 out of 643
Neff 6.8
Searched_HMMs 29240
Date Mon Mar 25 16:28:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024000.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/024000hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4aw6_A CAAX prenyl protease 1 100.0 1.5E-72 5.2E-77 545.9 27.8 267 5-271 19-286 (482)
2 3c37_A Peptidase, M48 family; 98.5 1.6E-07 5.4E-12 83.6 6.1 64 202-272 25-94 (253)
3 3cqb_A Probable protease HTPX 98.2 2.5E-06 8.5E-11 66.2 6.0 61 209-273 12-79 (107)
4 4f67_A UPF0176 protein LPG2838 50.8 7.6 0.00026 34.1 2.4 44 207-256 19-63 (265)
5 3s6e_A RNA-binding protein 39; 50.5 15 0.0005 27.9 3.7 43 208-254 13-61 (114)
6 1p9i_A Cortexillin I/GCN4 hybr 50.1 4.9 0.00017 23.0 0.7 17 215-231 14-30 (31)
7 3cqn_A Violaxanthin DE-epoxida 44.9 15 0.0005 30.8 3.1 32 212-243 141-172 (185)
8 3sao_A Extracellular fatty aci 37.8 27 0.00093 27.3 3.6 32 212-243 117-148 (160)
9 3ue2_A Poly(U)-binding-splicin 37.3 14 0.00047 28.1 1.7 36 207-243 25-61 (118)
10 1e5p_A Aphrodisin; lipocalin, 36.5 24 0.00081 27.2 3.0 34 208-242 112-145 (151)
11 3mk7_C Cytochrome C oxidase, C 36.2 50 0.0017 29.1 5.5 24 179-202 55-78 (311)
12 1jmt_A Splicing factor U2AF 35 36.2 29 0.00099 25.4 3.3 35 218-253 38-73 (104)
13 3o22_A Prostaglandin-H2 D-isom 36.1 28 0.00096 27.1 3.5 32 212-243 124-155 (162)
14 2dit_A HIV TAT specific factor 35.6 35 0.0012 24.9 3.8 33 218-254 38-70 (112)
15 2pe8_A Splicing factor 45; RRM 35.4 36 0.0012 25.0 3.8 36 217-253 24-61 (105)
16 1bj7_A D 2; allergen, lipocali 34.6 23 0.00079 27.5 2.7 31 212-242 120-150 (156)
17 3ov5_A VIRB7 (XAC2622), unchar 34.3 16 0.00053 26.4 1.4 26 209-235 6-31 (85)
18 2hlv_A Odorant-binding protein 33.0 30 0.001 26.9 3.1 31 213-243 123-153 (160)
19 2ra6_A Trichosurin; lipocalin, 31.7 29 0.001 27.1 2.9 29 213-241 133-161 (166)
20 1dzk_A PIG OBP, odorant-bindin 31.4 30 0.001 26.7 2.9 31 212-242 121-151 (157)
21 2l5p_A Lipocalin 12; beta barr 30.7 40 0.0014 27.0 3.6 34 212-245 136-169 (184)
22 2hzq_A Apolipoprotein D, APO-D 30.4 55 0.0019 25.8 4.4 32 212-243 130-161 (174)
23 2l8s_A Integrin alpha-1; trans 30.0 1E+02 0.0034 20.5 4.7 42 180-221 8-49 (54)
24 2ay0_A Bifunctional PUTA prote 29.6 30 0.001 22.9 2.2 21 216-236 11-31 (58)
25 2k9i_A Plasmid PRN1, complete 29.6 14 0.00048 23.6 0.5 22 216-237 17-38 (55)
26 1ew3_A Allergen EQU C 1; lipoc 29.0 36 0.0012 26.2 2.9 30 212-241 120-149 (159)
27 3s26_A Neutrophil gelatinase-a 28.8 62 0.0021 26.1 4.5 36 207-243 139-174 (190)
28 3v4m_A Splicing factor U2AF 65 28.4 37 0.0013 24.8 2.8 37 217-254 26-65 (105)
29 1lf7_A Complement protein C8ga 28.3 48 0.0016 26.5 3.7 35 207-242 130-164 (182)
30 3l4r_A Allergen DOG 2, minor a 27.5 35 0.0012 27.1 2.7 31 213-243 124-154 (170)
31 3qkg_A Protein AMBP; beta barr 27.4 63 0.0022 26.2 4.3 31 213-243 136-166 (193)
32 3ozb_A Methylthioadenosine pho 27.2 56 0.0019 28.3 4.1 40 207-246 139-181 (259)
33 1epa_A Epididymal retinoic aci 27.2 44 0.0015 25.8 3.2 30 212-241 120-149 (164)
34 3kff_A MUP 4, major urinary pr 27.0 41 0.0014 26.3 3.0 30 212-241 123-152 (162)
35 2cpg_A REPA protein, transcrip 26.6 31 0.0011 20.9 1.8 20 216-235 10-29 (45)
36 2xst_A Lipocalin 15; transport 26.3 37 0.0013 26.0 2.6 30 212-241 126-155 (161)
37 1gm6_A SAL, salivary lipocalin 25.9 42 0.0014 26.6 2.9 31 212-242 126-156 (175)
38 3cbc_A Neutrophil gelatinase-a 25.1 50 0.0017 26.6 3.2 30 212-241 161-190 (198)
39 1xki_A VON ebner'S gland prote 24.1 43 0.0015 26.1 2.6 29 213-241 116-144 (162)
40 2gpe_A Bifunctional protein PU 23.7 44 0.0015 21.1 2.1 21 216-236 11-31 (52)
41 3ebw_A PER A 4 allergen; beta 23.5 52 0.0018 26.0 3.0 30 212-241 127-156 (163)
42 1q1v_A DEK protein; winged-hel 22.5 40 0.0014 23.5 1.8 28 205-232 2-30 (70)
43 3bx8_A Engineered human lipoca 22.2 63 0.0021 25.5 3.2 31 212-242 141-171 (178)
44 1qwd_A Outer membrane lipoprot 22.1 64 0.0022 25.9 3.3 30 212-241 144-173 (177)
45 1zv1_A Doublesex protein; UBA 22.1 60 0.002 22.2 2.5 25 212-236 2-26 (65)
46 1gka_B Crustacyanin A2 subunit 22.0 56 0.0019 25.5 2.9 31 212-242 136-166 (174)
47 3iyz_A Aquaporin-4; water tran 21.8 64 0.0022 29.4 3.5 58 181-248 247-304 (340)
48 2a2u_A Protein (alpha-2U-globu 21.2 63 0.0022 25.3 3.1 30 212-241 142-171 (181)
49 1oef_A Apolipoprotein E; glyco 20.7 34 0.0012 18.9 0.9 20 210-230 2-21 (26)
50 1baz_A ARC repressor; transcri 20.7 37 0.0013 22.0 1.3 21 216-236 15-35 (53)
51 3ups_A Iojap-like protein; PSI 20.3 1E+02 0.0035 24.2 4.0 58 211-270 14-73 (136)
52 3fiq_A OBP1, RCG36470, odorant 20.2 62 0.0021 25.3 2.8 36 207-243 117-152 (157)
53 2e9x_A DNA replication complex 20.2 1.5E+02 0.005 23.3 5.0 43 16-58 73-120 (149)
No 1
>4aw6_A CAAX prenyl protease 1 homolog; hydrolase, M48 peptidase, integral membrane protein, prelami processing, ageing, progeria; HET: PC1; 3.40A {Homo sapiens} PDB: 2ypt_A
Probab=100.00 E-value=1.5e-72 Score=545.92 Aligned_cols=267 Identities=48% Similarity=0.842 Sum_probs=251.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhcCC-CCChhhcccCCHHHHHHHHHHhhhhhhHHhHHHHHHHHHHHHHHHhchH
Q 024000 5 YMEAVVGFMILMYFFETYLDLRQHAALKLP-KLPKTLEGVISQEKFEKSRGYSLDKSHFHFVHEFVTILMDSAILLFRIL 83 (274)
Q Consensus 5 ~~~~~~~~~~~~~l~e~yL~~rq~~~~~~~-~vP~~l~~~~~~e~~~ka~~Y~~~k~~~~~~~~~~~~~~~~~~l~~g~~ 83 (274)
..+++++++++.++||.||++||+|+++++ ++|+++++++|+|+|+||++|+++|.+|++++++++.+..++++++|++
T Consensus 19 ~~~~il~~~~~~~~~e~yL~~RQ~~~~~~~~~vP~~l~~~~~~e~f~ka~~Y~~~k~~f~~~~~~~~~i~~~~~l~~g~~ 98 (482)
T 4aw6_A 19 IFGAVLLFSWTVYLWETFLAQRQRRIYKTTTHVPPELGQIMDSETFEKSRLYQLDKSTFSFWSGLYSETEGTLILLFGGI 98 (482)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSCCSGGGTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 467899999999999999999999999765 8999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhhHHHHhccCCccchhHHHHHHHHHHHHHHhcccchhhhhhheeeccCCCCCCCHHHHHHHHHHHHHHHHHHH
Q 024000 84 PWFWKKSGNFLVLVGLDAENEILHTLSFLAGVMLWSQLTDLPFSLYSTFVIEARHGFNKQTIWLFFRDMIKGMILAIVLG 163 (274)
Q Consensus 84 ~~lw~~~~~~~~~~~~~~~~~~~~~~~f~~~~~l~~~li~LPf~~Y~~f~le~kyGfn~~t~~~f~~D~~k~~~l~~vl~ 163 (274)
|++|++++++..+.+.++.++++++++|++++++++++++|||++|++|++|+||||||||++.|++|++|+.+++++++
T Consensus 99 ~~lw~~~~~~~~~~~~~~~~~i~~s~~f~~~~~l~~~l~~LP~~~Y~tfvle~~~Gfnk~t~~~f~~D~~k~~~l~~vi~ 178 (482)
T 4aw6_A 99 PYLWRLSGRFCGYAGFGPEYEITQSLVFLLLATLFSALAGLPWSLYNTFVIEEKHGFNQQTLGFFMKDAIKKFVVTQCIL 178 (482)
T ss_dssp HHHHHHTCC--------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHTTCBCCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHHHHHhHHHHHHheeehhhcCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 99999887776665433357899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHhhhhcccCccCCChhHHHHHHHHHHhcCCCCCceEEEeCC
Q 024000 164 PPIVSAIIIIVQKGGPYLAIYLWAFMFVLSLVMMTLYPVLIAPLFNKFTPLPEGELREKIEKLASSLKFPLKKLFVVDGS 243 (274)
Q Consensus 164 ~~l~~~~~~i~~~~g~~wwl~~w~~~~~~~~~~~~l~P~~i~PLFnkf~PL~dg~L~~~I~~La~~~gf~~~~v~v~d~S 243 (274)
+|++++++++++++|++||+|+|++.++++++++++||.+|+||||||+|+|||||+++|+++|+++|||+.+|||+|+|
T Consensus 179 ~pl~~~~~~ii~~~g~~~wl~~w~~~~~~~l~~~~iyP~~I~PLfnk~~Pl~dg~L~~~Ie~la~~~~fp~~~v~vv~gS 258 (482)
T 4aw6_A 179 LPVSSLLLYIIKIGGDYFFIYAWLFTLVVSLVLVTIYADYIAPLFDKFTPLPEGKLKEEIEVMAKSIDFPLTKVYVVEGS 258 (482)
T ss_dssp HHHHHHHHHHHHHSCSSHHHHHHHHHHHHHHHHHHHHHHHTHHHHSCEEECCSSHHHHHHHHHHHHTTCCEEEEEEECGG
T ss_pred HHHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCCcHHHHHHHHHHHHHcCCCCCcEEEEeCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCcceeeeCCCCCceEeeehhhhhh
Q 024000 244 TRSSHSNAYMYGFFKNKRIVLYDTLIQQ 271 (274)
Q Consensus 244 ~rs~~sNAyf~G~g~~kRIVL~DTLl~~ 271 (274)
|||+|+|||++|+|++||||++|||+++
T Consensus 259 kRs~~~NAy~~G~~~~krIVl~dtLl~~ 286 (482)
T 4aw6_A 259 KRSSHSNAYFYGFFKNKRIVLFDTLLEE 286 (482)
T ss_dssp GTBSCCCEEEEESSSCEEEEEEHHHHC-
T ss_pred CCCCCCceEEEcCCCCcEEEEEchHHHh
Confidence 9999999999999999999999999987
No 2
>3c37_A Peptidase, M48 family; Q74D82, GSR143A, structural genomics, protein structure initiative, northeast structural genomics consortium; 1.70A {Geobacter sulfurreducens pca}
Probab=98.47 E-value=1.6e-07 Score=83.62 Aligned_cols=64 Identities=16% Similarity=0.219 Sum_probs=56.4
Q ss_pred HHhhhhcccCccCCChhHHHHHHHHHHhcCCCCC------ceEEEeCCCCCCCcceeeeCCCCCceEeeehhhhhhc
Q 024000 202 VLIAPLFNKFTPLPEGELREKIEKLASSLKFPLK------KLFVVDGSTRSSHSNAYMYGFFKNKRIVLYDTLIQQV 272 (274)
Q Consensus 202 ~~i~PLFnkf~PL~dg~L~~~I~~La~~~gf~~~------~v~v~d~S~rs~~sNAyf~G~g~~kRIVL~DTLl~~~ 272 (274)
....+++++++|++|++++++|++++++.+.+.+ ++||+|. ...|||.+|- ++||++|+|++.+
T Consensus 25 ~~~~~~~~~~~~~~d~~l~~~l~~l~~~l~~~~~~~~~~~~v~v~~~----~~~NAfa~~g---g~I~v~~gLl~~l 94 (253)
T 3c37_A 25 KFAVEIEKQQQPVNDPEVQRYVDKVGKRLLSGARAVEFDYVFKVVKD----DSVNAFAIPG---GRVYVHTGLLKAA 94 (253)
T ss_dssp HHHHHHHTTCCBCCCHHHHHHHHHHHHHHHHTSSCCCSCCEEEEECC----CSCCEEEETT---TEEEEEHHHHHHC
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHhCCCCCCCeEEEEEeC----CCCCeeEcCC---CeEEeeHHHHhhC
Confidence 4557899999999999999999999999888776 8999994 4699999983 4999999999876
No 3
>3cqb_A Probable protease HTPX homolog; heat shock protein HTPX domain, PSI-2, protein structure INI structural genomics; HET: MSE; 1.86A {Vibrio parahaemolyticus rimd 2210633}
Probab=98.17 E-value=2.5e-06 Score=66.21 Aligned_cols=61 Identities=13% Similarity=0.168 Sum_probs=46.8
Q ss_pred ccCccCCC------hhHHHHHHHHHHhcCCCCCceEEEeCCCCCCCcceeeeCCCCCceE-eeehhhhhhcC
Q 024000 209 NKFTPLPE------GELREKIEKLASSLKFPLKKLFVVDGSTRSSHSNAYMYGFFKNKRI-VLYDTLIQQVK 273 (274)
Q Consensus 209 nkf~PL~d------g~L~~~I~~La~~~gf~~~~v~v~d~S~rs~~sNAyf~G~g~~kRI-VL~DTLl~~~~ 273 (274)
++-+|++| ++|++.++++++++|+|..++|++|. ...|||.+|.++.+++ ++.+-|++.++
T Consensus 12 ~g~~~~~~~~~~~~~~L~~~~~~l~~~~~~~~~~v~v~~~----~~~NAf~~g~~~~~~~i~v~~gLl~~l~ 79 (107)
T 3cqb_A 12 VGGMVIESPRNETEHWLLETVGRQAQQAGIGMPTVAIYDS----ADINAFATGAKRDDSLVAVSTGLLHNMT 79 (107)
T ss_dssp CTTEECSSCSSHHHHHHHHHHHHHHHHHTCCCCEEEEECC----SSEEEEEECCC--CCEEEEEHHHHHHSC
T ss_pred cCCccCCCccchhHHHHHHHHHHHHHHcCCCCCeEEEEEC----CCcCEEEEecCCCCCEEEEcHHHHhhCC
Confidence 44566654 46999999999999999999999994 5789999999986665 55554887654
No 4
>4f67_A UPF0176 protein LPG2838; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium; 1.79A {Legionella pneumophila subsp}
Probab=50.80 E-value=7.6 Score=34.15 Aligned_cols=44 Identities=25% Similarity=0.305 Sum_probs=34.8
Q ss_pred hcccCccCCChh-HHHHHHHHHHhcCCCCCceEEEeCCCCCCCcceeeeCC
Q 024000 207 LFNKFTPLPEGE-LREKIEKLASSLKFPLKKLFVVDGSTRSSHSNAYMYGF 256 (274)
Q Consensus 207 LFnkf~PL~dg~-L~~~I~~La~~~gf~~~~v~v~d~S~rs~~sNAyf~G~ 256 (274)
.|+||+|++|.+ +|+.+.++|++.|+. ..|++-. ..-|+-+.|-
T Consensus 19 ~~Y~f~~~~d~~~~~~~~~~~~~~~~~~-G~i~~a~-----eGiN~t~~g~ 63 (265)
T 4f67_A 19 SFYKFIPLNDFRSLREPILTKMHEIGIK-GTIILAH-----EGVNGGFAGN 63 (265)
T ss_dssp EEEEECCCTTHHHHHHHHHHHHHHHTCE-EEEEEET-----TEEEEEEEEC
T ss_pred EEeCeecCCCHHHHHHHHHHHHHHCCCe-EEEEEcC-----ccceEEEEeC
Confidence 799999999865 999999999999865 4555543 5677777774
No 5
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=50.45 E-value=15 Score=27.85 Aligned_cols=43 Identities=19% Similarity=0.377 Sum_probs=29.6
Q ss_pred cccCccCC------ChhHHHHHHHHHHhcCCCCCceEEEeCCCCCCCcceeee
Q 024000 208 FNKFTPLP------EGELREKIEKLASSLKFPLKKLFVVDGSTRSSHSNAYMY 254 (274)
Q Consensus 208 Fnkf~PL~------dg~L~~~I~~La~~~gf~~~~v~v~d~S~rs~~sNAyf~ 254 (274)
-|=++|-+ +.++++.|.+.+.+.| ++.+|.+...+ .+.+||+.
T Consensus 13 ~Nm~~~~e~~d~~~~~el~edl~~~f~kfG-~V~~v~i~~~~---~~G~~fV~ 61 (114)
T 3s6e_A 13 SNMFNPQTEEEVGWDTEIKDDVIEECNKHG-GVIHIYVDKNS---AQGNVYVK 61 (114)
T ss_dssp ESSCCTTTCCSTTHHHHHHHHHHHHHTTTT-CCSEEEECTTC---TTCCEEEE
T ss_pred ECCCChHHccChhHHHHHHHHHHHHHhccC-CEEEEEEecCC---CcEEEEEE
Confidence 34455544 4778899999999999 67788775432 45666653
No 6
>1p9i_A Cortexillin I/GCN4 hybrid peptide; coiled-coil, unknown function; 1.17A {Synthetic} SCOP: h.1.10.1
Probab=50.07 E-value=4.9 Score=22.98 Aligned_cols=17 Identities=24% Similarity=0.462 Sum_probs=14.9
Q ss_pred CChhHHHHHHHHHHhcC
Q 024000 215 PEGELREKIEKLASSLK 231 (274)
Q Consensus 215 ~dg~L~~~I~~La~~~g 231 (274)
|+.+|+.+++++..|+|
T Consensus 14 enkqlkakveellakvg 30 (31)
T 1p9i_A 14 ENKQLKAKVEELLAKVG 30 (31)
T ss_dssp HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 56789999999999987
No 7
>3cqn_A Violaxanthin DE-epoxidase, chloroplast; lipocalin, enzyme, xanthophyll cycle, non photochemical quenching, NPQ, antheraxanthin, zeaxanthin; 2.00A {Arabidopsis thaliana} PDB: 3cqr_A
Probab=44.88 E-value=15 Score=30.77 Aligned_cols=32 Identities=16% Similarity=0.244 Sum_probs=28.2
Q ss_pred ccCCChhHHHHHHHHHHhcCCCCCceEEEeCC
Q 024000 212 TPLPEGELREKIEKLASSLKFPLKKLFVVDGS 243 (274)
Q Consensus 212 ~PL~dg~L~~~I~~La~~~gf~~~~v~v~d~S 243 (274)
+|-..+|+.++.++.|+++|+..+++.+.|.|
T Consensus 141 sp~l~peale~f~~fa~~~Gl~~e~~~~~dn~ 172 (185)
T 3cqn_A 141 SSVLPNSIIPELEKAAKSIGRDFSTFIRTDNT 172 (185)
T ss_dssp SSSCCGGGHHHHHHHHHHTTCCGGGSEECCCC
T ss_pred CCCCCHHHHHHHHHHHHHcCCCHHHEEEecCC
Confidence 34445889999999999999999999999987
No 8
>3sao_A Extracellular fatty acid-binding protein; beta-barrel, siderophore binding protein, transport protein; HET: NKN DBH; 1.80A {Gallus gallus} SCOP: b.60.1.1 PDB: 1jzu_A 2kt4_B* 2lbv_A*
Probab=37.81 E-value=27 Score=27.33 Aligned_cols=32 Identities=13% Similarity=0.051 Sum_probs=26.6
Q ss_pred ccCCChhHHHHHHHHHHhcCCCCCceEEEeCC
Q 024000 212 TPLPEGELREKIEKLASSLKFPLKKLFVVDGS 243 (274)
Q Consensus 212 ~PL~dg~L~~~I~~La~~~gf~~~~v~v~d~S 243 (274)
+|-.++|..++..+.+++.|++.++|...+.+
T Consensus 117 ~~~~~~e~~~~f~~~~~~~G~~~~~i~~~~~~ 148 (160)
T 3sao_A 117 SREVSPTAMAIFRKLARERNYTDEMVAVLPSQ 148 (160)
T ss_dssp SSSCCHHHHHHHHHHHHTTTCCGGGEEECCCC
T ss_pred CCCCCHHHHHHHHHHHHHcCCCHHHEEECCCC
Confidence 34445789999999999999999999877644
No 9
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=37.30 E-value=14 Score=28.12 Aligned_cols=36 Identities=11% Similarity=0.301 Sum_probs=27.9
Q ss_pred hcccCccCC-ChhHHHHHHHHHHhcCCCCCceEEEeCC
Q 024000 207 LFNKFTPLP-EGELREKIEKLASSLKFPLKKLFVVDGS 243 (274)
Q Consensus 207 LFnkf~PL~-dg~L~~~I~~La~~~gf~~~~v~v~d~S 243 (274)
|-|=++|-+ +.++++.|.+.+.+.| ++.+|.++...
T Consensus 25 L~Nm~~~~el~ddleedl~eef~k~G-~V~~v~I~~~~ 61 (118)
T 3ue2_A 25 LRNMVDPKDIDDDLEGEVTEECGKFG-AVNRVIIYQEK 61 (118)
T ss_dssp EESCSCGGGCCTTHHHHHHHHHTTTS-CEEEEEEEEEE
T ss_pred EECCCCHHHHHHHHHHHHHHHHhccC-CEeEEEEeecC
Confidence 456666744 4579999999999999 78888888643
No 10
>1e5p_A Aphrodisin; lipocalin, pheromone, hamster,; HET: MSE; 1.63A {Mesocricetus auratus} SCOP: b.60.1.1
Probab=36.50 E-value=24 Score=27.17 Aligned_cols=34 Identities=21% Similarity=0.240 Sum_probs=26.7
Q ss_pred cccCccCCChhHHHHHHHHHHhcCCCCCceEEEeC
Q 024000 208 FNKFTPLPEGELREKIEKLASSLKFPLKKLFVVDG 242 (274)
Q Consensus 208 Fnkf~PL~dg~L~~~I~~La~~~gf~~~~v~v~d~ 242 (274)
+.|-..+ +++.+++..+.|++.|++.++|...+.
T Consensus 112 lsR~~~l-~~e~~~~f~~~~~~~G~~~~~ii~~~~ 145 (151)
T 1e5p_A 112 AGKGNAL-TPEENEILVQFAHEKKIPVENILNILA 145 (151)
T ss_dssp EESSSCC-CHHHHHHHHHHHHHTTCCGGGEEECGG
T ss_pred EecCCCC-CHHHHHHHHHHHHHcCCCHHHEEECCc
Confidence 3344444 578999999999999999999976653
No 11
>3mk7_C Cytochrome C oxidase, CBB3-type, subunit P; TM helices, oxidoreductase; HET: HEM HEC FC6; 3.20A {Pseudomonas stutzeri}
Probab=36.22 E-value=50 Score=29.14 Aligned_cols=24 Identities=25% Similarity=0.481 Sum_probs=20.6
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHH
Q 024000 179 PYLAIYLWAFMFVLSLVMMTLYPV 202 (274)
Q Consensus 179 ~~wwl~~w~~~~~~~~~~~~l~P~ 202 (274)
+.||++.+.+.+++.++..++||-
T Consensus 55 p~ww~~~f~~~iv~~~~y~~~yp~ 78 (311)
T 3mk7_C 55 PRWWFLLFIGTLVFGILYLVLYPG 78 (311)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHSTT
T ss_pred ChHHHHHHHHHHHHHHHHHHHHhh
Confidence 688999999999999888888883
No 12
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=36.20 E-value=29 Score=25.40 Aligned_cols=35 Identities=17% Similarity=0.192 Sum_probs=24.9
Q ss_pred hHHHHHHHHH-HhcCCCCCceEEEeCCCCCCCcceee
Q 024000 218 ELREKIEKLA-SSLKFPLKKLFVVDGSTRSSHSNAYM 253 (274)
Q Consensus 218 ~L~~~I~~La-~~~gf~~~~v~v~d~S~rs~~sNAyf 253 (274)
++.+.|.+.+ .+.| ++.+|.++......++..||+
T Consensus 38 ~~~edl~~~f~~~~G-~V~~v~i~~~~~~~~~G~~fV 73 (104)
T 1jmt_A 38 EFFEEVFTEMEEKYG-EVEEMNVCDNLGDHLVGNVYV 73 (104)
T ss_dssp HHHHHHHHHHHHHTC-CEEEEEECCSSSSSSEEEEEE
T ss_pred HHHHHHHHHhhccCC-ceEEEEEEeCCCCCccEEEEE
Confidence 4557888888 9999 788888886544444556665
No 13
>3o22_A Prostaglandin-H2 D-isomerase; lipocalin, prostaglandin synthase; HET: OLA PLM; 1.40A {Homo sapiens} PDB: 3o19_A* 3o2y_A* 2wwp_A 2czt_A 2czu_A 2rq0_A 2e4j_A 2ktd_A*
Probab=36.14 E-value=28 Score=27.13 Aligned_cols=32 Identities=22% Similarity=0.393 Sum_probs=26.0
Q ss_pred ccCCChhHHHHHHHHHHhcCCCCCceEEEeCC
Q 024000 212 TPLPEGELREKIEKLASSLKFPLKKLFVVDGS 243 (274)
Q Consensus 212 ~PL~dg~L~~~I~~La~~~gf~~~~v~v~d~S 243 (274)
+|-.+++..++..+.+++.|++.++|...+-+
T Consensus 124 ~~~~~~~~~~~f~~~~~~~G~~~~~i~~~~q~ 155 (162)
T 3o22_A 124 TQTPRAELKEKFTAFCKAQGFTEDTIVFLPQT 155 (162)
T ss_dssp SSSCCHHHHHHHHHHHHHTTCCGGGEEECCBC
T ss_pred CCCCCHHHHHHHHHHHHHcCCCHHHEEECCCC
Confidence 35456788999999999999999999766543
No 14
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=35.62 E-value=35 Score=24.92 Aligned_cols=33 Identities=24% Similarity=0.372 Sum_probs=24.5
Q ss_pred hHHHHHHHHHHhcCCCCCceEEEeCCCCCCCcceeee
Q 024000 218 ELREKIEKLASSLKFPLKKLFVVDGSTRSSHSNAYMY 254 (274)
Q Consensus 218 ~L~~~I~~La~~~gf~~~~v~v~d~S~rs~~sNAyf~ 254 (274)
++++.|.+++.+.| ++.+|.+.|.. ++..||+.
T Consensus 38 ~~e~~l~~~f~~~G-~v~~v~i~~~~---~~G~afV~ 70 (112)
T 2dit_A 38 EIREDLRVECSKFG-QIRKLLLFDRH---PDGVASVS 70 (112)
T ss_dssp HHHHHHHHHGGGTS-CCSEEEEETTC---TTCEEEEE
T ss_pred HHHHHHHHHHHccC-CEeEEEEecCC---CCEEEEEE
Confidence 47899999999999 89999776532 45556543
No 15
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=35.44 E-value=36 Score=24.95 Aligned_cols=36 Identities=6% Similarity=0.122 Sum_probs=25.3
Q ss_pred hhHHHHHHHHHHhcCCCCCceEEEeCCC--CCCCcceee
Q 024000 217 GELREKIEKLASSLKFPLKKLFVVDGST--RSSHSNAYM 253 (274)
Q Consensus 217 g~L~~~I~~La~~~gf~~~~v~v~d~S~--rs~~sNAyf 253 (274)
.++++.|.+.+.+.| ++.+|.++...+ ..++..||+
T Consensus 24 dd~~~dl~~~f~~~G-~V~~v~i~~~~~~~~~~~G~~FV 61 (105)
T 2pe8_A 24 EDLEVETKEECEKYG-KVGKCVIFEIPGAPDDEAVRIFL 61 (105)
T ss_dssp --CHHHHHHHGGGGS-CEEEEEEEECSSCCTTTSEEEEE
T ss_pred HHHHHHHHHHHHhcC-CEEEEEEecCCCCCCCCcEEEEE
Confidence 468899999999999 788999886422 123556665
No 16
>1bj7_A D 2; allergen, lipocalin; 1.80A {Bos taurus} SCOP: b.60.1.1
Probab=34.58 E-value=23 Score=27.48 Aligned_cols=31 Identities=19% Similarity=0.028 Sum_probs=25.5
Q ss_pred ccCCChhHHHHHHHHHHhcCCCCCceEEEeC
Q 024000 212 TPLPEGELREKIEKLASSLKFPLKKLFVVDG 242 (274)
Q Consensus 212 ~PL~dg~L~~~I~~La~~~gf~~~~v~v~d~ 242 (274)
+|--+++.+++..+.|++.|++.++|...+.
T Consensus 120 ~~~l~~e~~~~f~~~~~~~G~~~~~i~~~~~ 150 (156)
T 1bj7_A 120 GTSFTPEELEKYQQLNSERGVPNENIENLIK 150 (156)
T ss_dssp SSCCCHHHHHHHHHHHHHHTCCGGGEEECGG
T ss_pred CCCCCHHHHHHHHHHHHHcCCCHHHEEecCC
Confidence 3434578999999999999999999976653
No 17
>3ov5_A VIRB7 (XAC2622), uncharacterized protein; type IV secretion system component, bacteri membrane, xanthomonas axonopodis PV citri; 1.04A {Xanthomonas axonopodis PV}
Probab=34.25 E-value=16 Score=26.45 Aligned_cols=26 Identities=27% Similarity=0.535 Sum_probs=21.6
Q ss_pred ccCccCCChhHHHHHHHHHHhcCCCCC
Q 024000 209 NKFTPLPEGELREKIEKLASSLKFPLK 235 (274)
Q Consensus 209 nkf~PL~dg~L~~~I~~La~~~gf~~~ 235 (274)
++-+|+ ||.||..+|..++..+.+++
T Consensus 6 Yqatpm-DgTlK~mLERWa~ds~m~l~ 31 (85)
T 3ov5_A 6 YQATPM-DGTLKTMLERWAADSNMQLS 31 (85)
T ss_dssp EECCTT-CCBHHHHHHHHHHTTTCEEE
T ss_pred EEeecc-chHHHHHHHHHHhhcCCeeE
Confidence 456777 79999999999999988753
No 18
>2hlv_A Odorant-binding protein; domain swapping, transport protein; HET: LIK; 1.65A {Bos taurus} PDB: 1gt1_A* 1gt3_A* 1gt4_A* 1gt5_A* 1hn2_A* 1obp_A 1g85_A 1pbo_A*
Probab=32.97 E-value=30 Score=26.94 Aligned_cols=31 Identities=23% Similarity=0.012 Sum_probs=25.5
Q ss_pred cCCChhHHHHHHHHHHhcCCCCCceEEEeCC
Q 024000 213 PLPEGELREKIEKLASSLKFPLKKLFVVDGS 243 (274)
Q Consensus 213 PL~dg~L~~~I~~La~~~gf~~~~v~v~d~S 243 (274)
|--+.|..++..++|++.|++.++|...+.+
T Consensus 123 ~~~~~e~~~~f~~~~~~~G~~~~~i~~~~~~ 153 (160)
T 2hlv_A 123 LNVEDEDLEKFWKLTEDKGIDKKNVVNFLEN 153 (160)
T ss_dssp SSCCHHHHHHHHHHHHHTTCCGGGEEETTSC
T ss_pred CCCCHHHHHHHHHHHHHcCCCHHHEEECCCC
Confidence 4446789999999999999999999765533
No 19
>2ra6_A Trichosurin; lipocalin, beta barrel, glycoprotein, MILK protein, secreted, transport, transport protein; 1.50A {Trichosurus vulpecula} PDB: 2r73_A 2r74_A
Probab=31.75 E-value=29 Score=27.10 Aligned_cols=29 Identities=14% Similarity=0.266 Sum_probs=24.5
Q ss_pred cCCChhHHHHHHHHHHhcCCCCCceEEEe
Q 024000 213 PLPEGELREKIEKLASSLKFPLKKLFVVD 241 (274)
Q Consensus 213 PL~dg~L~~~I~~La~~~gf~~~~v~v~d 241 (274)
|-.+.+..++..+.+++.|++.+++....
T Consensus 133 ~~~~~e~~~~f~~~~~~~G~~~~~i~~~~ 161 (166)
T 2ra6_A 133 PNLSNEIKKRFEEDFMNRGFRRENILDIS 161 (166)
T ss_dssp SCCCHHHHHHHHHHHHTTTCCGGGEEEGG
T ss_pred CCCCHHHHHHHHHHHHHcCCCHHHEEECC
Confidence 44467899999999999999999996654
No 20
>1dzk_A PIG OBP, odorant-binding protein; lipocalin, transport, olfaction, sensory transduction; HET: PRZ; 1.48A {Sus scrofa} SCOP: b.60.1.1 PDB: 1dzj_A* 1dzm_A* 1dzp_A* 1e00_A* 1e02_A* 1e06_A* 1hqp_A* 1a3y_A
Probab=31.42 E-value=30 Score=26.68 Aligned_cols=31 Identities=13% Similarity=0.079 Sum_probs=25.4
Q ss_pred ccCCChhHHHHHHHHHHhcCCCCCceEEEeC
Q 024000 212 TPLPEGELREKIEKLASSLKFPLKKLFVVDG 242 (274)
Q Consensus 212 ~PL~dg~L~~~I~~La~~~gf~~~~v~v~d~ 242 (274)
+|--+.|..++..++|++.|++.++|...+.
T Consensus 121 ~~~~~~e~~~~f~~~~~~~G~~~~~i~~~~~ 151 (157)
T 1dzk_A 121 GTDIEDQDLEKFKEVTRENGIPEENIVNIIE 151 (157)
T ss_dssp SSCCCHHHHHHHHHHHHHTTCCGGGEEESGG
T ss_pred CCCCCHHHHHHHHHHHHHcCCCHHHEEECCc
Confidence 4434678999999999999999999976553
No 21
>2l5p_A Lipocalin 12; beta barrel, transport protein; NMR {Rattus norvegicus}
Probab=30.75 E-value=40 Score=26.96 Aligned_cols=34 Identities=9% Similarity=0.013 Sum_probs=27.7
Q ss_pred ccCCChhHHHHHHHHHHhcCCCCCceEEEeCCCC
Q 024000 212 TPLPEGELREKIEKLASSLKFPLKKLFVVDGSTR 245 (274)
Q Consensus 212 ~PL~dg~L~~~I~~La~~~gf~~~~v~v~d~S~r 245 (274)
+|-.+.+..++..+++++.|++.+++...+-+.+
T Consensus 136 ~~~~~~e~~~~f~~~~~~~G~~~~~ii~~~q~~~ 169 (184)
T 2l5p_A 136 DWKITHKTIDRFIALTKTQNLTKNNLLFPDLTDW 169 (184)
T ss_dssp SSCCCHHHHHHHHHHHHHTTCCGGGEECCCCSCC
T ss_pred CCCCCHHHHHHHHHHHHHcCCChHHEEEcCCCCc
Confidence 3545688999999999999999999977765543
No 22
>2hzq_A Apolipoprotein D, APO-D, APOD; lipocalin, beta barrel, bilin-binding protein, transport protein; HET: STR; 1.80A {Homo sapiens} PDB: 2hzr_A
Probab=30.37 E-value=55 Score=25.79 Aligned_cols=32 Identities=19% Similarity=0.203 Sum_probs=26.9
Q ss_pred ccCCChhHHHHHHHHHHhcCCCCCceEEEeCC
Q 024000 212 TPLPEGELREKIEKLASSLKFPLKKLFVVDGS 243 (274)
Q Consensus 212 ~PL~dg~L~~~I~~La~~~gf~~~~v~v~d~S 243 (274)
+|-.+++..+++.+.+++.|+..+++...+-+
T Consensus 130 ~~~~~~~~~~~~~~~~~~~G~~~~~l~~~~q~ 161 (174)
T 2hzq_A 130 NVALPPETVDSLKNILTSNNIDVKKMTVTDQV 161 (174)
T ss_dssp SSCCCHHHHHHHHHHHHHTTCCCTTCEECCCS
T ss_pred CCCCCHHHHHHHHHHHHHcCCCHHHeEECCCC
Confidence 45557889999999999999999999877644
No 23
>2l8s_A Integrin alpha-1; transmembrane region, detergent micelle, CE adhesion; NMR {Homo sapiens}
Probab=30.05 E-value=1e+02 Score=20.45 Aligned_cols=42 Identities=17% Similarity=0.147 Sum_probs=21.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhhhcccCccCCChhHHH
Q 024000 180 YLAIYLWAFMFVLSLVMMTLYPVLIAPLFNKFTPLPEGELRE 221 (274)
Q Consensus 180 ~wwl~~w~~~~~~~~~~~~l~P~~i~PLFnkf~PL~dg~L~~ 221 (274)
-||+++.....++.++...++-.+=.=.|.+-+|=+++||+.
T Consensus 8 p~WiIi~svl~GLLLL~Lii~~LwK~GFFKR~~~~~~~~~~~ 49 (54)
T 2l8s_A 8 PLWVILLSAFAGLLLLMLLILALWKIGFFKRPLKKKMEKLEH 49 (54)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCSCCCCC---
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHcCcccCCCcchhhHHhh
Confidence 456555444444444444444434345777777777777753
No 24
>2ay0_A Bifunctional PUTA protein; ribbon-helix-helix, DNA-binding domain, proline catabo proline utilization A, DNA binding protein; 2.10A {Escherichia coli} SCOP: a.43.1.11
Probab=29.63 E-value=30 Score=22.95 Aligned_cols=21 Identities=19% Similarity=0.245 Sum_probs=17.7
Q ss_pred ChhHHHHHHHHHHhcCCCCCc
Q 024000 216 EGELREKIEKLASSLKFPLKK 236 (274)
Q Consensus 216 dg~L~~~I~~La~~~gf~~~~ 236 (274)
|++++++++++|++.|-+.+.
T Consensus 11 ~~el~~rL~~lA~~~~rs~s~ 31 (58)
T 2ay0_A 11 DDATRERIKSAATRIDRTPHW 31 (58)
T ss_dssp CHHHHHHHHHHHHHTTCCHHH
T ss_pred CHHHHHHHHHHHHHHCcCHHH
Confidence 578999999999999876544
No 25
>2k9i_A Plasmid PRN1, complete sequence; plasmid COPY control protein, ribbon helix helix protein, DNA binding protein; NMR {Sulfolobus islandicus} PDB: 3ft7_A
Probab=29.56 E-value=14 Score=23.55 Aligned_cols=22 Identities=14% Similarity=0.336 Sum_probs=18.6
Q ss_pred ChhHHHHHHHHHHhcCCCCCce
Q 024000 216 EGELREKIEKLASSLKFPLKKL 237 (274)
Q Consensus 216 dg~L~~~I~~La~~~gf~~~~v 237 (274)
|+++.++++++|++.|.+.+++
T Consensus 17 ~~el~~~l~~~a~~~g~s~s~~ 38 (55)
T 2k9i_A 17 PQEWHDRLMEIAKEKNLTLSDV 38 (55)
T ss_dssp CHHHHHHHHHHHHHHTCCHHHH
T ss_pred CHHHHHHHHHHHHHhCCCHHHH
Confidence 6889999999999999876543
No 26
>1ew3_A Allergen EQU C 1; lipocalin, beta barrel; 2.30A {Equus caballus} SCOP: b.60.1.1
Probab=29.03 E-value=36 Score=26.25 Aligned_cols=30 Identities=13% Similarity=0.204 Sum_probs=24.9
Q ss_pred ccCCChhHHHHHHHHHHhcCCCCCceEEEe
Q 024000 212 TPLPEGELREKIEKLASSLKFPLKKLFVVD 241 (274)
Q Consensus 212 ~PL~dg~L~~~I~~La~~~gf~~~~v~v~d 241 (274)
+|-.+++..++..+.+++.|++.+++...+
T Consensus 120 ~~~~~~~~~~~f~~~~~~~G~~~~~i~~~~ 149 (159)
T 1ew3_A 120 EPDVSPEIKEEFVKIVQKRGIVKENIIDLT 149 (159)
T ss_dssp SSSCCHHHHHHHHHHHHHTTCCGGGEEEGG
T ss_pred CCCCCHHHHHHHHHHHHHcCCCHHHEEECC
Confidence 344467899999999999999999996654
No 27
>3s26_A Neutrophil gelatinase-associated lipocalin; beta-barrel, siderophore binding protein, N-linked glycosyla secreted, transport protein; HET: NAG BMA MAN; 1.80A {Mus musculus} SCOP: b.60.1.1 PDB: 2k23_A
Probab=28.77 E-value=62 Score=26.05 Aligned_cols=36 Identities=19% Similarity=0.291 Sum_probs=28.2
Q ss_pred hcccCccCCChhHHHHHHHHHHhcCCCCCceEEEeCC
Q 024000 207 LFNKFTPLPEGELREKIEKLASSLKFPLKKLFVVDGS 243 (274)
Q Consensus 207 LFnkf~PL~dg~L~~~I~~La~~~gf~~~~v~v~d~S 243 (274)
|+.|- |-.+.+..++..+.+++.|++.++|...+-+
T Consensus 139 llsR~-~~l~~e~~~~f~~~~~~~G~~~~~ii~~~q~ 174 (190)
T 3s26_A 139 LYGRT-KELSPELKERFTRFAKSLGLKDDNIIFSVPT 174 (190)
T ss_dssp EEESS-SCCCHHHHHHHHHHHHHTTCCGGGEEEEECC
T ss_pred EecCC-CCCCHHHHHHHHHHHHHcCCCHHHEEECCCC
Confidence 33343 4345789999999999999999999888754
No 28
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=28.44 E-value=37 Score=24.84 Aligned_cols=37 Identities=11% Similarity=0.125 Sum_probs=25.9
Q ss_pred hhHHHHHHHHHHhcCCCCCceEEEeCCCC---CCCcceeee
Q 024000 217 GELREKIEKLASSLKFPLKKLFVVDGSTR---SSHSNAYMY 254 (274)
Q Consensus 217 g~L~~~I~~La~~~gf~~~~v~v~d~S~r---s~~sNAyf~ 254 (274)
.++++.|.+.+.+.| ++.+|.++..... .++.+||+.
T Consensus 26 ~~~~~dl~~~f~k~G-~V~~v~i~~~~~~~~~~~~G~~fV~ 65 (105)
T 3v4m_A 26 EEIVEDVRDECSKYG-LVKSIEIPRPVDGVEVPGCGKIFVE 65 (105)
T ss_dssp HHHHHHHHHHHHTTS-CEEEEECCCCBTTBCCTTTTEEEEE
T ss_pred HHHHHHHHHHHHccC-CEEEEEEeccCCCCCcCCcEEEEEE
Confidence 458899999999999 7888887754321 245566653
No 29
>1lf7_A Complement protein C8gamma; lipocalin, beta barrel, calyx, MAC, immune system; HET: CIT; 1.20A {Homo sapiens} SCOP: b.60.1.1 PDB: 1iw2_A* 2ovd_A* 2ove_A 2ova_A 2rd7_C 3ojy_C* 2qos_C
Probab=28.35 E-value=48 Score=26.45 Aligned_cols=35 Identities=11% Similarity=0.269 Sum_probs=27.2
Q ss_pred hcccCccCCChhHHHHHHHHHHhcCCCCCceEEEeC
Q 024000 207 LFNKFTPLPEGELREKIEKLASSLKFPLKKLFVVDG 242 (274)
Q Consensus 207 LFnkf~PL~dg~L~~~I~~La~~~gf~~~~v~v~d~ 242 (274)
|+.+-..+ +.+..++..+.|++.|++.++|..++-
T Consensus 130 llsR~p~l-~~e~~~~f~~~~~~~G~~~~~i~~~~q 164 (182)
T 1lf7_A 130 LYARSLPV-SDSVLSGFEQRVQEAHLTEDQIFYFPK 164 (182)
T ss_dssp EEESSSSC-CHHHHHHHHHHHHHTTCCGGGEEECCS
T ss_pred EEccCCCC-CHHHHHHHHHHHHHcCCCHHHEEeCCC
Confidence 33444444 577899999999999999999977663
No 30
>3l4r_A Allergen DOG 2, minor allergen CAN F 2; lipocalin allergen, disulfide bond, secreted, TRAN lipid binding protein; 1.45A {Canis familiaris}
Probab=27.47 E-value=35 Score=27.12 Aligned_cols=31 Identities=6% Similarity=0.178 Sum_probs=25.1
Q ss_pred cCCChhHHHHHHHHHHhcCCCCCceEEEeCC
Q 024000 213 PLPEGELREKIEKLASSLKFPLKKLFVVDGS 243 (274)
Q Consensus 213 PL~dg~L~~~I~~La~~~gf~~~~v~v~d~S 243 (274)
|-.++|..++..+++++.|++.++|...+..
T Consensus 124 ~~~~~e~~~~f~~~~~~~Gl~~~~i~~~~~~ 154 (170)
T 3l4r_A 124 LSRQQDFLPAFESVCEDIGLHKDQIVVLSDD 154 (170)
T ss_dssp GGGTTTTHHHHHHHHHHTTCCGGGEEECCTT
T ss_pred CCCCHHHHHHHHHHHHHcCCCHHHEEECCCC
Confidence 4345679999999999999999999766533
No 31
>3qkg_A Protein AMBP; beta barrel, binding protein, bound chromophore, human plasm system; 2.30A {Homo sapiens}
Probab=27.35 E-value=63 Score=26.18 Aligned_cols=31 Identities=16% Similarity=0.322 Sum_probs=25.8
Q ss_pred cCCChhHHHHHHHHHHhcCCCCCceEEEeCC
Q 024000 213 PLPEGELREKIEKLASSLKFPLKKLFVVDGS 243 (274)
Q Consensus 213 PL~dg~L~~~I~~La~~~gf~~~~v~v~d~S 243 (274)
|-.+.+..++..+.+++.|++.++|...+-+
T Consensus 136 ~~l~~e~~~~f~~~~~~~G~~~~~i~~~~q~ 166 (193)
T 3qkg_A 136 PQLRETLLQDFRVVAQGVGIPEDSIFTMADR 166 (193)
T ss_dssp SCCCHHHHHHHHHHHHHTTCCSTTEEECBCC
T ss_pred CCCCHHHHHHHHHHHHHcCCCHHHEEECCCC
Confidence 4445789999999999999999999877643
No 32
>3ozb_A Methylthioadenosine phosphorylase; 5'-methylthioinosine,phosphorylase, transferase; HET: HPA; 2.80A {Pseudomonas aeruginosa}
Probab=27.18 E-value=56 Score=28.33 Aligned_cols=40 Identities=13% Similarity=0.234 Sum_probs=29.7
Q ss_pred hcccCccCCChhHHHHHHHHHHhcCCC--CCceEE-EeCCCCC
Q 024000 207 LFNKFTPLPEGELREKIEKLASSLKFP--LKKLFV-VDGSTRS 246 (274)
Q Consensus 207 LFnkf~PL~dg~L~~~I~~La~~~gf~--~~~v~v-~d~S~rs 246 (274)
-|-.+.+-.|.+|++++.+-|++.|++ .+++|+ +++.+-.
T Consensus 139 ~~~~~~~~~d~~L~~~~~~~a~~~gi~~~~~Gvy~~~~Gp~fe 181 (259)
T 3ozb_A 139 THIDFSHPYDEPLRQRLIEALRALGLAHSSHGVYACTQGPRLE 181 (259)
T ss_dssp CCCCCSSCSCHHHHHHHHHHHHHTTCCEESCCEEEECCCSSCC
T ss_pred CcCccCCCCCHHHHHHHHHHHHHcCCCeEeeeEEEEEeCCccC
Confidence 344455667999999999999999998 477875 4555443
No 33
>1epa_A Epididymal retinoic acid-binding protein; 2.10A {Rattus norvegicus} SCOP: b.60.1.1 PDB: 1epb_A*
Probab=27.17 E-value=44 Score=25.80 Aligned_cols=30 Identities=20% Similarity=0.309 Sum_probs=25.2
Q ss_pred ccCCChhHHHHHHHHHHhcCCCCCceEEEe
Q 024000 212 TPLPEGELREKIEKLASSLKFPLKKLFVVD 241 (274)
Q Consensus 212 ~PL~dg~L~~~I~~La~~~gf~~~~v~v~d 241 (274)
+|-.+.+..++..+.+++.|++.+++...+
T Consensus 120 ~~~l~~~~~~~~~~~~~~~G~~~~~i~~~~ 149 (164)
T 1epa_A 120 SLDDNGEALYNFRKITSDHGFSETDLYILK 149 (164)
T ss_dssp CSSCCHHHHHHHHHHHHHTTCCGGGEEECC
T ss_pred CCCCCHHHHHHHHHHHHHcCCCHHHEEECC
Confidence 454467889999999999999999997665
No 34
>3kff_A MUP 4, major urinary protein 4; pheromone, lipocalin, beta barrel, DI bond, pheromone-binding, secreted, transport, transport Pro; 0.96A {Mus musculus} SCOP: b.60.1.1 PDB: 3kfg_A 3kfh_A 3kfi_A 2l9c_A 2lb6_A 1i06_A 1i05_A* 1i04_A 1mup_A 1znd_A 1qy0_A* 1qy2_A* 1qy1_A 1zne_A 1zng_A 1znh_A 1znk_A* 1znl_A* 2dm5_A* 2ozq_A ...
Probab=27.03 E-value=41 Score=26.27 Aligned_cols=30 Identities=13% Similarity=0.175 Sum_probs=25.0
Q ss_pred ccCCChhHHHHHHHHHHhcCCCCCceEEEe
Q 024000 212 TPLPEGELREKIEKLASSLKFPLKKLFVVD 241 (274)
Q Consensus 212 ~PL~dg~L~~~I~~La~~~gf~~~~v~v~d 241 (274)
+|-.+.+..++..+++++.|++.++|...+
T Consensus 123 ~~~~~~~~~~~f~~~~~~~G~~~~~i~~~~ 152 (162)
T 3kff_A 123 KADLNSDIKEKFVKLCEEHGIIKENIIDLT 152 (162)
T ss_dssp SSCCCHHHHHHHHHHHHHTTCCGGGEEEGG
T ss_pred CCCCCHHHHHHHHHHHHHcCCCHHHEEECC
Confidence 344467899999999999999999997665
No 35
>2cpg_A REPA protein, transcriptional repressor COPG; DNA-binding protein, plasmid, gene regulation; 1.60A {Streptococcus agalactiae} SCOP: a.43.1.3 PDB: 1b01_A* 1ea4_A*
Probab=26.57 E-value=31 Score=20.89 Aligned_cols=20 Identities=20% Similarity=0.343 Sum_probs=16.9
Q ss_pred ChhHHHHHHHHHHhcCCCCC
Q 024000 216 EGELREKIEKLASSLKFPLK 235 (274)
Q Consensus 216 dg~L~~~I~~La~~~gf~~~ 235 (274)
|+++.++++++|++.|.+-+
T Consensus 10 ~~~l~~~Ld~~a~~~g~srS 29 (45)
T 2cpg_A 10 SESVLENLEKMAREMGLSKS 29 (45)
T ss_dssp EHHHHHHHHHHHHHHTCCHH
T ss_pred CHHHHHHHHHHHHHHCcCHH
Confidence 57899999999999997643
No 36
>2xst_A Lipocalin 15; transport protein, LCN15, MSFL2541; 1.63A {Homo sapiens}
Probab=26.29 E-value=37 Score=25.98 Aligned_cols=30 Identities=10% Similarity=0.165 Sum_probs=25.3
Q ss_pred ccCCChhHHHHHHHHHHhcCCCCCceEEEe
Q 024000 212 TPLPEGELREKIEKLASSLKFPLKKLFVVD 241 (274)
Q Consensus 212 ~PL~dg~L~~~I~~La~~~gf~~~~v~v~d 241 (274)
+|-.+++..++..+.+++.|++.+++...+
T Consensus 126 ~~~~~~~~~~~~~~~~~~~G~~~~~i~~~~ 155 (161)
T 2xst_A 126 TQDVSPQALKSFQDFYPTLGLPKDMMVMLP 155 (161)
T ss_dssp SSSCCHHHHHHHHHHGGGGTCCGGGEEECC
T ss_pred CCCCCHHHHHHHHHHHHHcCCCHHHEEECC
Confidence 454468899999999999999999997655
No 37
>1gm6_A SAL, salivary lipocalin; odorant-binding protein; HET: NAG; 2.13A {Sus scrofa} SCOP: b.60.1.1
Probab=25.92 E-value=42 Score=26.58 Aligned_cols=31 Identities=13% Similarity=0.222 Sum_probs=26.0
Q ss_pred ccCCChhHHHHHHHHHHhcCCCCCceEEEeC
Q 024000 212 TPLPEGELREKIEKLASSLKFPLKKLFVVDG 242 (274)
Q Consensus 212 ~PL~dg~L~~~I~~La~~~gf~~~~v~v~d~ 242 (274)
+|-.+.+..++..+.+++.|++.+++..++-
T Consensus 126 ~~~l~~e~~~~f~~~~~~~G~~~~~i~~~~q 156 (175)
T 1gm6_A 126 KPDVEPKLKDKFVEICQQYGIIKENIIDLTK 156 (175)
T ss_dssp SSCCCHHHHHHHHHHHHTTTCCGGGEEEGGG
T ss_pred CCCCCHHHHHHHHHHHHHcCCCHHHEEECCC
Confidence 3545678999999999999999999977654
No 38
>3cbc_A Neutrophil gelatinase-associated lipocalin; siderocalin, NGAL, enterobactin, glycoprotein, pyrroli carboxylic acid, secreted; HET: DBS; 2.17A {Homo sapiens} PDB: 3hwg_A* 3hwf_A* 3hwe_A* 3u03_A* 3u0d_A* 3cmp_A* 3i0a_A* 3hwd_A 3t1d_A* 3by0_A*
Probab=25.11 E-value=50 Score=26.58 Aligned_cols=30 Identities=23% Similarity=0.308 Sum_probs=25.0
Q ss_pred ccCCChhHHHHHHHHHHhcCCCCCceEEEe
Q 024000 212 TPLPEGELREKIEKLASSLKFPLKKLFVVD 241 (274)
Q Consensus 212 ~PL~dg~L~~~I~~La~~~gf~~~~v~v~d 241 (274)
+|-.+.|..++..+.+++.|++.+++...+
T Consensus 161 ~~~l~~e~~~~f~~~~~~~G~~~~~i~~~~ 190 (198)
T 3cbc_A 161 TKELTSELKENFIRFSKSLGLPENHIVFPV 190 (198)
T ss_dssp SSCCCHHHHHHHHHHHHHTTCCGGGEECCB
T ss_pred CCCCCHHHHHHHHHHHHHcCCCHHHEEecC
Confidence 454467899999999999999999996554
No 39
>1xki_A VON ebner'S gland protein; beta barrel, ligand binding protein, transport protein; 1.80A {Homo sapiens} SCOP: b.60.1.1 PDB: 3eyc_A
Probab=24.14 E-value=43 Score=26.08 Aligned_cols=29 Identities=21% Similarity=0.241 Sum_probs=23.8
Q ss_pred cCCChhHHHHHHHHHHhcCCCCCceEEEe
Q 024000 213 PLPEGELREKIEKLASSLKFPLKKLFVVD 241 (274)
Q Consensus 213 PL~dg~L~~~I~~La~~~gf~~~~v~v~d 241 (274)
|--+.+..++..+.+++.|++.+++...+
T Consensus 116 ~~~~~e~~~~f~~~~~~~G~~~~~i~~~~ 144 (162)
T 1xki_A 116 PKNNLEALEDFEKAAGARGLSTESILIPR 144 (162)
T ss_dssp SSCCCCCHHHHHHHHHHTTCTTSCEECCS
T ss_pred CCCCHHHHHHHHHHHHHcCCCHHHEEecC
Confidence 43356789999999999999999996554
No 40
>2gpe_A Bifunctional protein PUTA; ribbon-helix-helix, DNA-binding domain, proline catabo proline utilization A, DNA binding protein; 1.90A {Escherichia coli} PDB: 2rbf_A* 2jxg_A 2jxh_A 2jxi_A*
Probab=23.72 E-value=44 Score=21.06 Aligned_cols=21 Identities=19% Similarity=0.245 Sum_probs=17.5
Q ss_pred ChhHHHHHHHHHHhcCCCCCc
Q 024000 216 EGELREKIEKLASSLKFPLKK 236 (274)
Q Consensus 216 dg~L~~~I~~La~~~gf~~~~ 236 (274)
|+++.++++++|++.|-+.+.
T Consensus 11 ~~~l~~~l~~lA~~~~rs~s~ 31 (52)
T 2gpe_A 11 DDATRERIKSAATRIDRTPHW 31 (52)
T ss_dssp EHHHHHHHHHHHHHTTCCHHH
T ss_pred CHHHHHHHHHHHHHHCcCHHH
Confidence 468999999999999976544
No 41
>3ebw_A PER A 4 allergen; beta barrel, cockroach; HET: PE4; 2.80A {Periplaneta americana}
Probab=23.53 E-value=52 Score=26.01 Aligned_cols=30 Identities=13% Similarity=0.248 Sum_probs=25.3
Q ss_pred ccCCChhHHHHHHHHHHhcCCCCCceEEEe
Q 024000 212 TPLPEGELREKIEKLASSLKFPLKKLFVVD 241 (274)
Q Consensus 212 ~PL~dg~L~~~I~~La~~~gf~~~~v~v~d 241 (274)
+|--++++++++.+.+++.|+..+++...+
T Consensus 127 ~~~l~~~~~~~~~~~~~~~G~~~~~l~~~~ 156 (163)
T 3ebw_A 127 ETSFDDATKAKVNEVLAPYNLSLDDMEPVD 156 (163)
T ss_dssp SSSCCHHHHHHHHHHHGGGTCCGGGSEECC
T ss_pred CCCCCHHHHHHHHHHHHHcCCCHHHeEECC
Confidence 454568899999999999999999986665
No 42
>1q1v_A DEK protein; winged-helix motif, DNA binding protein; NMR {Homo sapiens} SCOP: a.159.4.1
Probab=22.51 E-value=40 Score=23.46 Aligned_cols=28 Identities=39% Similarity=0.660 Sum_probs=22.1
Q ss_pred hhhcccCccCC-ChhHHHHHHHHHHhcCC
Q 024000 205 APLFNKFTPLP-EGELREKIEKLASSLKF 232 (274)
Q Consensus 205 ~PLFnkf~PL~-dg~L~~~I~~La~~~gf 232 (274)
.||--|..+.+ |+++++.|.++.+.++.
T Consensus 2 ~~l~~k~~~~Psd~ei~~~I~~IL~~aDL 30 (70)
T 1q1v_A 2 EPLIKKLKKPPTDEELKETIKKLLASANL 30 (70)
T ss_dssp CSCCCCCCCCCCHHHHHHHHHHHHTTSCG
T ss_pred cchhhcccCCcCHHHHHHHHHHHHHhCCH
Confidence 37777776665 78899999999988764
No 43
>3bx8_A Engineered human lipocalin 2; protein design, ligand binding protein, de novo protein, protein binding; HET: 1PE PE5; 2.00A {Homo sapiens} PDB: 3bx7_A* 3dtq_A 3dsz_A* 1l6m_A* 3tf6_A* 1x71_A* 1x89_A* 1x8u_A* 3fw4_A 3fw5_A 3k3l_A* 3pec_A* 3ped_A* 3tzs_A* 1ngl_A 1dfv_A* 1qqs_A*
Probab=22.21 E-value=63 Score=25.46 Aligned_cols=31 Identities=23% Similarity=0.282 Sum_probs=25.7
Q ss_pred ccCCChhHHHHHHHHHHhcCCCCCceEEEeC
Q 024000 212 TPLPEGELREKIEKLASSLKFPLKKLFVVDG 242 (274)
Q Consensus 212 ~PL~dg~L~~~I~~La~~~gf~~~~v~v~d~ 242 (274)
+|-.+++..+++.+.+++.|++.+++...+-
T Consensus 141 ~~~l~~~~~~~~~~~~~~~G~~~~~i~~~~q 171 (178)
T 3bx8_A 141 TKELASELKENFIRFSKSLGLPENHIVFPVP 171 (178)
T ss_dssp SSCCCHHHHHHHHHHHHHTTCCGGGEECCBC
T ss_pred CCCCCHHHHHHHHHHHHHcCCCHHHEEECCC
Confidence 4545688999999999999999999876653
No 44
>1qwd_A Outer membrane lipoprotein BLC; bacterial lipocalin, lipid binding protein; 1.75A {Escherichia coli} SCOP: b.60.1.1 PDB: 2aco_A* 3mbt_A
Probab=22.09 E-value=64 Score=25.90 Aligned_cols=30 Identities=23% Similarity=0.385 Sum_probs=25.5
Q ss_pred ccCCChhHHHHHHHHHHhcCCCCCceEEEe
Q 024000 212 TPLPEGELREKIEKLASSLKFPLKKLFVVD 241 (274)
Q Consensus 212 ~PL~dg~L~~~I~~La~~~gf~~~~v~v~d 241 (274)
+|-.+++..+++.+.+++.|+..+++...+
T Consensus 144 ~p~l~~~~~~~~~~~~~~~G~d~~~l~~~~ 173 (177)
T 1qwd_A 144 TPTISDEVKQEMLAVATREGFDVSKFIWVQ 173 (177)
T ss_dssp SSSCCHHHHHHHHHHHHHTTCCGGGCEECC
T ss_pred CCCCCHHHHHHHHHHHHHcCCCHHHeEECC
Confidence 455567889999999999999999987665
No 45
>1zv1_A Doublesex protein; UBA domain, dimerization, sex determination, transcription factor, protein binding; 1.60A {Drosophila melanogaster} PDB: 2jz0_A
Probab=22.08 E-value=60 Score=22.23 Aligned_cols=25 Identities=20% Similarity=0.461 Sum_probs=18.9
Q ss_pred ccCCChhHHHHHHHHHHhcCCCCCc
Q 024000 212 TPLPEGELREKIEKLASSLKFPLKK 236 (274)
Q Consensus 212 ~PL~dg~L~~~I~~La~~~gf~~~~ 236 (274)
.|+++++|-+.=..|.+|.++|-+-
T Consensus 2 ~~l~~d~Ll~~c~kLLEkf~YpWEm 26 (65)
T 1zv1_A 2 SPLGQDVFLDYCQKLLEKFRYPWEL 26 (65)
T ss_dssp ----CHHHHHHHHHHHHHTTCCGGG
T ss_pred CCccHHHHHHHHHHHHHHhCCCHHH
Confidence 4899999999999999999998653
No 46
>1gka_B Crustacyanin A2 subunit; lipocalin, lobster, astaxanthin, bathochromic, coloration; HET: AXT D12 EPE; 3.23A {Homarus gammarus} SCOP: b.60.1.1
Probab=21.99 E-value=56 Score=25.55 Aligned_cols=31 Identities=23% Similarity=0.234 Sum_probs=25.7
Q ss_pred ccCCChhHHHHHHHHHHhcCCCCCceEEEeC
Q 024000 212 TPLPEGELREKIEKLASSLKFPLKKLFVVDG 242 (274)
Q Consensus 212 ~PL~dg~L~~~I~~La~~~gf~~~~v~v~d~ 242 (274)
+|-.+++..+++.+.+++.|++.+++...+-
T Consensus 136 ~~~~~~~~~~~~~~~~~~~G~~~~~l~~~~q 166 (174)
T 1gka_B 136 TPQTSGPAVEKTAAVFNKNGVEFSKFVPVSH 166 (174)
T ss_dssp SCCSSSHHHHHHHHHHHHHTCCGGGCEECBC
T ss_pred CCCCCHHHHHHHHHHHHHcCCCHHHeEECCC
Confidence 4544678899999999999999999977664
No 47
>3iyz_A Aquaporin-4; water transport, water channel, two-dimensional C membrane protein, baculovirus expression system, glycoprote membrane; 10.00A {Rattus norvegicus}
Probab=21.79 E-value=64 Score=29.36 Aligned_cols=58 Identities=21% Similarity=0.307 Sum_probs=36.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhhcccCccCCChhHHHHHHHHHHhcCCCCCceEEEeCCCCCCC
Q 024000 181 LAIYLWAFMFVLSLVMMTLYPVLIAPLFNKFTPLPEGELREKIEKLASSLKFPLKKLFVVDGSTRSSH 248 (274)
Q Consensus 181 wwl~~w~~~~~~~~~~~~l~P~~i~PLFnkf~PL~dg~L~~~I~~La~~~gf~~~~v~v~d~S~rs~~ 248 (274)
.|+| |+.-++-.++-.++|-.++. ++.++++|+.+..++..-+.++=|.+..++|+.+
T Consensus 247 ~WVy-wvgPiiGailaallY~~l~~---------p~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (340)
T 3iyz_A 247 HWIY-WVGPIIGAVLAGALYEYVFC---------PDVELKRRLKEAFSKAAQQTKGSYMEVEDNRSQV 304 (340)
T ss_pred Eeeh-hHHHHHHHHHHHHHHHHHhC---------CChhhhHHHHHhhcCcccccccchhhhhcccccc
Confidence 3544 45545555555555543321 4667888888888888777777777766666444
No 48
>2a2u_A Protein (alpha-2U-globulin); lipid binding protein; 2.50A {Rattus norvegicus} SCOP: b.60.1.1 PDB: 2a2g_A
Probab=21.20 E-value=63 Score=25.31 Aligned_cols=30 Identities=17% Similarity=0.236 Sum_probs=24.7
Q ss_pred ccCCChhHHHHHHHHHHhcCCCCCceEEEe
Q 024000 212 TPLPEGELREKIEKLASSLKFPLKKLFVVD 241 (274)
Q Consensus 212 ~PL~dg~L~~~I~~La~~~gf~~~~v~v~d 241 (274)
+|-.+++..++..+.+++.|++.+++...+
T Consensus 142 ~~~~~~~~~~~f~~~~~~~G~~~~~i~~~~ 171 (181)
T 2a2u_A 142 TKDLSSDIKEKFAKLCEAHGITRDNIIDLT 171 (181)
T ss_dssp SSSCCHHHHHHHHHHHHTTTCCGGGEEEGG
T ss_pred CCCCCHHHHHHHHHHHHHcCCCHHHEEECC
Confidence 444467899999999999999999996544
No 49
>1oef_A Apolipoprotein E; glycoprotein, plasma, lipid transport, HDL, VLDL, chylomicron, sialic acid, heparin-binding; NMR {Homo sapiens} SCOP: j.39.1.1
Probab=20.74 E-value=34 Score=18.93 Aligned_cols=20 Identities=20% Similarity=0.411 Sum_probs=15.5
Q ss_pred cCccCCChhHHHHHHHHHHhc
Q 024000 210 KFTPLPEGELREKIEKLASSL 230 (274)
Q Consensus 210 kf~PL~dg~L~~~I~~La~~~ 230 (274)
+++|+. +++|++++++.++.
T Consensus 2 ~~~P~~-e~ik~q~~~i~e~i 21 (26)
T 1oef_A 2 WFEPLV-EDMQRQWAGLVEKV 21 (26)
T ss_dssp CCTTHH-HHHHHHHHHHHHHH
T ss_pred CCCcHH-HHHHHHHHHHHHHH
Confidence 677875 56999998888764
No 50
>1baz_A ARC repressor; transcription regulation; 1.90A {Enterobacteria phage P22} SCOP: a.43.1.1 PDB: 1bdv_A* 1arq_A 1arr_A 1bdt_A* 1par_A* 1myk_A 1qtg_A 1b28_A 1myl_A
Probab=20.70 E-value=37 Score=22.05 Aligned_cols=21 Identities=14% Similarity=0.151 Sum_probs=18.2
Q ss_pred ChhHHHHHHHHHHhcCCCCCc
Q 024000 216 EGELREKIEKLASSLKFPLKK 236 (274)
Q Consensus 216 dg~L~~~I~~La~~~gf~~~~ 236 (274)
|++|+++|.+.|++.|..++.
T Consensus 15 p~eL~~~l~~~A~~~grS~N~ 35 (53)
T 1baz_A 15 PREVLDLVRKVAEENGRSVNS 35 (53)
T ss_dssp CHHHHHHHHHHHHHTTCCHHH
T ss_pred CHHHHHHHHHHHHHcCCCHHH
Confidence 578999999999999987654
No 51
>3ups_A Iojap-like protein; PSI-biology, MCSG, midwest center for structural genomics, U function, structural genomics; HET: MSE; 1.75A {Zymomonas mobilis subsp}
Probab=20.33 E-value=1e+02 Score=24.20 Aligned_cols=58 Identities=10% Similarity=0.026 Sum_probs=41.2
Q ss_pred CccCCChhHHHHHHHHHHhcCCCCCceEEEeCCCCCCCcceeeeCCCCCceE--eeehhhhh
Q 024000 211 FTPLPEGELREKIEKLASSLKFPLKKLFVVDGSTRSSHSNAYMYGFFKNKRI--VLYDTLIQ 270 (274)
Q Consensus 211 f~PL~dg~L~~~I~~La~~~gf~~~~v~v~d~S~rs~~sNAyf~G~g~~kRI--VL~DTLl~ 270 (274)
-.+++..+|.+.|.+.++.- ..++|.++|-+.+++-..-++..-|.+.|= -+.|.+.+
T Consensus 14 ~~~~~~~~l~~~i~~al~dk--Ka~DI~vlDv~~~s~~~DyfVIatg~S~rqv~Aiad~v~~ 73 (136)
T 3ups_A 14 QTSFDPEMLLKLVTDSLDDD--QALEIATIPLAGKSSIADYMVIASGRSSRQVTAMAQKLAD 73 (136)
T ss_dssp ---CCHHHHHHHHHHHHHHT--TCEEEEEEECTTTCSSCSEEEEEECSSHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHHHc--CCCCeEEEECCCCCcccCEEEEEEcCCHHHHHHHHHHHHH
Confidence 34455567777777777754 489999999999999999999988876653 33444433
No 52
>3fiq_A OBP1, RCG36470, odorant-binding protein 1F; lipocalin, oderant-binding protein, transport protein; 1.60A {Rattus norvegicus} SCOP: b.60.1.0
Probab=20.20 E-value=62 Score=25.28 Aligned_cols=36 Identities=17% Similarity=0.200 Sum_probs=28.3
Q ss_pred hcccCccCCChhHHHHHHHHHHhcCCCCCceEEEeCC
Q 024000 207 LFNKFTPLPEGELREKIEKLASSLKFPLKKLFVVDGS 243 (274)
Q Consensus 207 LFnkf~PL~dg~L~~~I~~La~~~gf~~~~v~v~d~S 243 (274)
|+.|-.++ ++|+.++-++++++.|++-++|.....+
T Consensus 117 LygR~~~~-s~e~~e~F~~~~~~~Gl~~enI~~~~~~ 152 (157)
T 3fiq_A 117 VAGKREDL-NKAQKQELRKLAEEYNIPNENTQHLVPT 152 (157)
T ss_dssp EEESSSCC-CHHHHHHHHHHHHHTTCCGGGCEECGGG
T ss_pred EEcCCCCC-CHHHHHHHHHHHHHcCCCHHHEEeCCCC
Confidence 45554445 4789999999999999999999776543
No 53
>2e9x_A DNA replication complex GINS protein PSF1; eukaryotic DNA replication; HET: DNA; 2.30A {Homo sapiens} SCOP: a.278.1.1 PDB: 2eho_B*
Probab=20.19 E-value=1.5e+02 Score=23.26 Aligned_cols=43 Identities=21% Similarity=0.089 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHhhh-----cCCCCChhhcccCCHHHHHHHHHHhhh
Q 024000 16 MYFFETYLDLRQHAAL-----KLPKLPKTLEGVISQEKFEKSRGYSLD 58 (274)
Q Consensus 16 ~~l~e~yL~~rq~~~~-----~~~~vP~~l~~~~~~e~~~ka~~Y~~~ 58 (274)
..++-+|+..|-.|.- ....+|++.+..+|+++.+=.++|+..
T Consensus 73 KrcLlAYl~~Rl~kI~~~~w~~g~~L~~~~~~~LS~~E~~f~~~Y~~l 120 (149)
T 2e9x_A 73 RRCTVAYLYDRLLRIRALRWEYGSVLPNALRFHMAAEEMEWFNNYKRS 120 (149)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCSSCCHHHHHTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHccccCChHHHhcCCHHHHHHHHHHHHH
Confidence 5667778777765522 235789999999999999988888654
Done!