BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 024003
(274 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|C0LGH2|Y1561_ARATH Probable LRR receptor-like serine/threonine-protein kinase
At1g56130 OS=Arabidopsis thaliana GN=At1g56130 PE=1 SV=2
Length = 1032
Score = 34.7 bits (78), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 42/134 (31%), Positives = 61/134 (45%), Gaps = 21/134 (15%)
Query: 80 MRLPSLRKSSVAEGLTVEGILENWLKIKPVIMEEWSENR------EALIELSGKVRD--- 130
+ LPSL+ + VA T+EG+ L + + + NR + I G +
Sbjct: 381 VSLPSLKLNLVANNFTLEGLDNRVLPGLNCLQKNFPCNRGKGIYSDFSINCGGPEKRSVT 440
Query: 131 ----EWMDTDF---TTWIGANRLYPGVSDALKLASS-RIYIVTSNQSRFVETLLREL--- 179
E D DF + ++ A + + S L SS IYI TS QS+FV TL EL
Sbjct: 441 GALFEREDEDFGPASFFVSAGQRWAASSVGLFAGSSNNIYIATS-QSQFVNTLDSELFQS 499
Query: 180 AGVTITPDRLYGLG 193
A ++ + R YGLG
Sbjct: 500 ARLSASSVRYYGLG 513
>sp|A8AH13|RNFE_CITK8 Electron transport complex protein RnfE OS=Citrobacter koseri
(strain ATCC BAA-895 / CDC 4225-83 / SGSC4696) GN=rnfE
PE=3 SV=1
Length = 230
Score = 33.9 bits (76), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 32/64 (50%), Gaps = 6/64 (9%)
Query: 34 SLFDGVDSALEDWI----VDQMHT--CFILLQLRPVVETGYDTLLLVRLLLEMRLPSLRK 87
+LFDG D L DW V+ HT F+L L P G +L V+ L++ ++ R
Sbjct: 156 TLFDGADGLLGDWAKVLRVEIFHTDSPFLLAMLPPGAFIGLGLMLAVKYLIDEKMKKRRA 215
Query: 88 SSVA 91
+VA
Sbjct: 216 EAVA 219
>sp|D3G0V0|BIOW_BACPE 6-carboxyhexanoate--CoA ligase OS=Bacillus pseudofirmus (strain
OF4) GN=bioW PE=3 SV=1
Length = 273
Score = 33.5 bits (75), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 46/180 (25%), Positives = 70/180 (38%), Gaps = 43/180 (23%)
Query: 88 SSVAEGLTVEGILENWLKIKPVIMEEWSENREALIELSGKV------------------- 128
SSVA+G L IKP ++EE L EL G +
Sbjct: 86 SSVADGQATARSLLTEAGIKPQVIEEAYYVLSELTELRGALFIDAATGQRLDDPIKNGVR 145
Query: 129 --RDEWMDTDFTTWIGANRLYPGV--SDALKLASSRIYIVTSNQSRFVETLLRELAGVTI 184
R +W DF+ W+ ++L P + +AL LA+ VT + + E +
Sbjct: 146 VTRMDWPLDDFSCWLNEHQLSPNIRMKEALALATK----VTQHPATIAELCWSD------ 195
Query: 185 TPDRLYGLGTGPKVNV--LKQLQKKPEHQGLRLHFVEDRLATLKNVIKEPELDGWNLYLV 242
PD + G K + QL++ E +G R+ FV+ +KN LD + YL
Sbjct: 196 DPDYITGYVASQKFGYQRISQLKELGEEKGCRIFFVDQ--TKMKN------LDAYINYLT 247
>sp|B0BQ80|RIMN_ACTPJ tRNA threonylcarbamoyladenosine biosynthesis protein RimN
OS=Actinobacillus pleuropneumoniae serotype 3 (strain
JL03) GN=rimN PE=3 SV=1
Length = 184
Score = 33.1 bits (74), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 45/99 (45%), Gaps = 13/99 (13%)
Query: 166 SNQSRFVETLLRELAGVTITPDRLYGLGTGPK----VNVLKQLQKKPEHQGLRLHFVEDR 221
+N VE L R V + ++GLG P V L +L+K+PE +GL L
Sbjct: 2 NNLENIVEQLKRNRV-VAYPTEAVFGLGCNPNNESAVRALLKLKKRPEEKGLIL------ 54
Query: 222 LATLKNVIKEPELDGWNLYLVDWG-YNTPKERAEAASMP 259
+A K ++ P +D L W + TP ERA MP
Sbjct: 55 IAPTKELLL-PYIDENKLTAAHWQIFETPSERAITWVMP 92
>sp|B3GY27|RIMN_ACTP7 tRNA threonylcarbamoyladenosine biosynthesis protein RimN
OS=Actinobacillus pleuropneumoniae serotype 7 (strain
AP76) GN=rimN PE=3 SV=2
Length = 184
Score = 33.1 bits (74), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 45/99 (45%), Gaps = 13/99 (13%)
Query: 166 SNQSRFVETLLRELAGVTITPDRLYGLGTGPK----VNVLKQLQKKPEHQGLRLHFVEDR 221
+N VE L R V + ++GLG P V L +L+K+PE +GL L
Sbjct: 2 NNLENIVEQLKRNRV-VAYPTEAVFGLGCNPNNESAVRALLKLKKRPEEKGLIL------ 54
Query: 222 LATLKNVIKEPELDGWNLYLVDWG-YNTPKERAEAASMP 259
+A K ++ P +D L W + TP ERA MP
Sbjct: 55 IAPTKELLL-PYIDENKLTAAHWQIFETPSERAITWVMP 92
>sp|A3N1E4|RIMN_ACTP2 tRNA threonylcarbamoyladenosine biosynthesis protein RimN
OS=Actinobacillus pleuropneumoniae serotype 5b (strain
L20) GN=rimN PE=3 SV=1
Length = 184
Score = 33.1 bits (74), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 45/99 (45%), Gaps = 13/99 (13%)
Query: 166 SNQSRFVETLLRELAGVTITPDRLYGLGTGPK----VNVLKQLQKKPEHQGLRLHFVEDR 221
+N VE L R V + ++GLG P V L +L+K+PE +GL L
Sbjct: 2 NNLENIVEQLKRNRV-VAYPTEAVFGLGCNPNNESAVRALLKLKKRPEEKGLIL------ 54
Query: 222 LATLKNVIKEPELDGWNLYLVDWG-YNTPKERAEAASMP 259
+A K ++ P +D L W + TP ERA MP
Sbjct: 55 IAPTKELLL-PYIDENKLTAAHWQIFETPSERAITWVMP 92
>sp|P19711|POLG_BVDVN Genome polyprotein OS=Bovine viral diarrhea virus (isolate NADL) PE=1
SV=2
Length = 3988
Score = 31.6 bits (70), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Query: 76 LLLEMRLPSLRKSSVAEGLTVEGILENWLKIKPVIMEEWSENREALIELSGKVRDEW 132
L++E R ++ L + ++ NW+K +PV++ + E + L + KVR EW
Sbjct: 3547 LVVEKRPRVIQYPEAKTRLAITKVMYNWVKQQPVVIPGY-EGKTPLFNIFDKVRKEW 3602
>sp|B3QPX0|HRCA_CHLP8 Heat-inducible transcription repressor HrcA OS=Chlorobaculum parvum
(strain NCIB 8327) GN=hrcA PE=3 SV=1
Length = 356
Score = 31.2 bits (69), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 29/51 (56%), Gaps = 10/51 (19%)
Query: 152 DALKLASSRIYIVTSNQSRFVETLLRELAG----------VTITPDRLYGL 192
D ++LAS+RI +V + QS FV+T++ EL V I +RL GL
Sbjct: 146 DIVQLASTRIMVVIAIQSLFVKTIVMELTAEISRQKIDDVVNILNERLSGL 196
>sp|Q8KCD6|HRCA_CHLTE Heat-inducible transcription repressor HrcA OS=Chlorobium tepidum
(strain ATCC 49652 / DSM 12025 / TLS) GN=hrcA PE=3 SV=1
Length = 356
Score = 31.2 bits (69), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 22/28 (78%)
Query: 152 DALKLASSRIYIVTSNQSRFVETLLREL 179
D ++LASSRI +V + QS FV+T++ EL
Sbjct: 146 DIVQLASSRIMVVIAIQSLFVKTIVMEL 173
>sp|B1LEQ4|RNFE_ECOSM Electron transport complex protein RnfE OS=Escherichia coli (strain
SMS-3-5 / SECEC) GN=rnfE PE=3 SV=1
Length = 231
Score = 30.8 bits (68), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 38/88 (43%), Gaps = 10/88 (11%)
Query: 11 GVICDSCEETALSAVKAARVRWPSLFDGVDSALEDWI----VDQMHT--CFILLQLRPVV 64
G C C +L + + +LFDG D+ L W V+ HT F+L L P
Sbjct: 137 GATCAMCVLGSLREI----IGNGTLFDGADALLGSWAKVLRVEIFHTDSPFLLAMLPPGA 192
Query: 65 ETGYDTLLLVRLLLEMRLPSLRKSSVAE 92
G +L + L++ R+ R + AE
Sbjct: 193 FIGLGLMLAGKYLIDERMKKRRTEAAAE 220
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.137 0.412
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 100,579,890
Number of Sequences: 539616
Number of extensions: 4041480
Number of successful extensions: 10398
Number of sequences better than 100.0: 34
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 33
Number of HSP's that attempted gapping in prelim test: 10395
Number of HSP's gapped (non-prelim): 34
length of query: 274
length of database: 191,569,459
effective HSP length: 116
effective length of query: 158
effective length of database: 128,974,003
effective search space: 20377892474
effective search space used: 20377892474
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (27.7 bits)