BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 024004
(274 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2F8M|A Chain A, Ribose 5-Phosphate Isomerase From Plasmodium Falciparum
pdb|2F8M|B Chain B, Ribose 5-Phosphate Isomerase From Plasmodium Falciparum
Length = 244
Score = 214 bits (546), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 107/227 (47%), Positives = 156/227 (68%), Gaps = 2/227 (0%)
Query: 43 QDDLKKLAADKAVD-YVKSGMALGLGTGSTAAFVVDRIGQLLKTGELRDIVGIPTSKRTE 101
D LKK+ A KAVD YV+S M +GLGTGST +V++RI LLK+G+L+D+V IPTS TE
Sbjct: 9 MDSLKKIVAYKAVDEYVQSNMTIGLGTGSTVFYVLERIDNLLKSGKLKDVVCIPTSIDTE 68
Query: 102 EQAKSLNIPLTTLDDHPSLDLAIDGADEVDPELNLVKGRGGALLREKMVEAASKSFVVVA 161
+A+ L IPLTTL+ H ++D+ IDG DE+D LNL+KGRGGAL+REK+V ++S +++
Sbjct: 69 LKARKLGIPLTTLEKHSNIDITIDGTDEIDLNLNLIKGRGGALVREKLVASSSSLLIIIG 128
Query: 162 DESKLVSGLGGSKLAMPVEVVQFCWKFNLVRLQDLFRELGCEAKLREGENGKPYITDNFN 221
DESKL + G A+P+E++ F ++ + L ++ GC K+R+ NG+ +ITDN N
Sbjct: 129 DESKLCTNGLGMTGAVPIEILTFGYEKIIENLLKIYTLKGCTYKIRK-RNGEIFITDNKN 187
Query: 222 YIIDLYFETPIKDGVSAGTEIGKLEGVVEHGLFLDMATAVIIAGKTG 268
YI+D +F PI+D + T I GVV+HG+F++M +I+ G
Sbjct: 188 YIVDFFFTEPIQDLLETCTRIKMTTGVVDHGIFVNMTNVALISKHDG 234
>pdb|1LK5|A Chain A, Structure Of The D-Ribose-5-Phosphate Isomerase From
Pyrococcus Horikoshii
pdb|1LK5|B Chain B, Structure Of The D-Ribose-5-Phosphate Isomerase From
Pyrococcus Horikoshii
pdb|1LK5|C Chain C, Structure Of The D-Ribose-5-Phosphate Isomerase From
Pyrococcus Horikoshii
pdb|1LK5|D Chain D, Structure Of The D-Ribose-5-Phosphate Isomerase From
Pyrococcus Horikoshii
pdb|1LK7|A Chain A, Structure Of D-Ribose-5-Phosphate Isomerase From In
Complex With Phospho-Erythronic Acid
pdb|1LK7|B Chain B, Structure Of D-Ribose-5-Phosphate Isomerase From In
Complex With Phospho-Erythronic Acid
pdb|1LK7|C Chain C, Structure Of D-Ribose-5-Phosphate Isomerase From In
Complex With Phospho-Erythronic Acid
pdb|1LK7|D Chain D, Structure Of D-Ribose-5-Phosphate Isomerase From In
Complex With Phospho-Erythronic Acid
Length = 229
Score = 175 bits (444), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 98/231 (42%), Positives = 150/231 (64%), Gaps = 7/231 (3%)
Query: 41 LTQDDLKKLAADKAVDYVKSGMALGLGTGSTAAFVVDRIGQLLKTGELRDIVGIPTSKRT 100
+ +++KK+AA +A+ +++ M +GLGTGST A+ + +G+ LK GE+ DIVG+PTS +
Sbjct: 1 MNVEEMKKIAAKEALKFIEDDMVIGLGTGSTTAYFIKLLGEKLKRGEISDIVGVPTSYQA 60
Query: 101 EEQAKSLNIPLTTLDDHPSLDLAIDGADEVDPELNLVKGRGGALLREKMVEAASKSFVVV 160
+ A +IP+ +LD ++D+A+DGADEVDP LNL+KGRG AL EK++E + +F+V+
Sbjct: 61 KLLAIEHDIPIASLDQVDAIDVAVDGADEVDPNLNLIKGRGAALTMEKIIEYRAGTFIVL 120
Query: 161 ADESKLVSGLGGSKLAMPVEVVQFCWKFNLVRLQDLFRELGCEAKLREGENGK-PYITDN 219
DE KLV L K+ +P+EV+ WK + L +F +A+LR G N P ITDN
Sbjct: 121 VDERKLVDYL-CQKMPVPIEVIPQAWKAIIEELS-IFN---AKAELRMGVNKDGPVITDN 175
Query: 220 FNYIIDLYFETPIKDGVSAGTEIGKLEGVVEHGLFLDMATAVIIAGKTGVE 270
N+IID F I D + E+ + GV+E+G+F D+A VI+ + GV+
Sbjct: 176 GNFIIDAKFPR-IDDPLDMEIELNTIPGVIENGIFADIADIVIVGTREGVK 225
>pdb|3L7O|A Chain A, Crystal Structure Of Ribose-5-Phosphate Isomerase A From
Streptococcus Mutans Ua159
pdb|3L7O|B Chain B, Crystal Structure Of Ribose-5-Phosphate Isomerase A From
Streptococcus Mutans Ua159
Length = 225
Score = 172 bits (436), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 102/228 (44%), Positives = 147/228 (64%), Gaps = 9/228 (3%)
Query: 44 DDLKKLAADKAVDYVKSGMALGLGTGSTAAFVVDRIGQLLKTGELRDIVGIPTSKRTEEQ 103
++LKK+A +A YV+ GM +GLGTGSTA + V+ +G+ ++ L+ ++G+ TS RT Q
Sbjct: 2 EELKKIAGVRAAQYVEDGMIVGLGTGSTAYYFVEEVGRRVQEEGLQ-VIGVTTSSRTTAQ 60
Query: 104 AKSLNIPLTTLDDHPSLDLAIDGADEVDPELNLVKGRGGALLREKMVEAASKSFVVVADE 163
A++L IPL ++D+ S+D+ +DGADEVDP N +KG GGALL EK+V +K ++ V DE
Sbjct: 61 AQALGIPLKSIDEVDSVDVTVDGADEVDPNFNGIKGGGGALLMEKIVGTLTKDYIWVVDE 120
Query: 164 SKLVSGLGGSKLAMPVEVVQFCWKFNLVRLQDLFRELGCEAKLREGENGKPYITDNFNYI 223
SK+V LG +L PVEVVQ+ + RL F + G + RE +G ++TD N+I
Sbjct: 121 SKMVDTLGAFRL--PVEVVQYGAE----RLFREFEKKGYKPSFRE-YDGVRFVTDMKNFI 173
Query: 224 IDLYFETPIKDGVSAGTEIGKLEGVVEHGLFLDMATAVIIAGKTGVEV 271
IDL + I D ++ G + GVVEHGLF M VI+AGK GV +
Sbjct: 174 IDLDLGS-IPDPIAFGNMLDHQVGVVEHGLFNGMVNRVIVAGKDGVRI 220
>pdb|1UJ5|A Chain A, Crystal Structure Of Thermus Thermophilus
Ribose-5-Phosphate Isomerase Complexed With
Ribose-5-Phosphate
Length = 227
Score = 169 bits (428), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 105/227 (46%), Positives = 142/227 (62%), Gaps = 9/227 (3%)
Query: 44 DDLKKLAADKAVDYVKSGMALGLGTGSTAAFVVDRIGQLLKTGELRDIVGIPTSKRTEEQ 103
+ KK AA A+ YV+ GM +GLGTGSTA + V + + L+ GEL+ +VG+PTS+ TEE
Sbjct: 6 ESYKKEAAHAAIAYVQDGMVVGLGTGSTARYAVLELARRLREGELKGVVGVPTSRATEEL 65
Query: 104 AKSLNIPLTTLDDHPSLDLAIDGADEVDPELNLVKGRGGALLREKMVEAASKSFVVVADE 163
AK IPL L +DLAIDGADE+ P L L+KG GGALLREK+VE +K F+V+AD
Sbjct: 66 AKREGIPLVDLPPE-GVDLAIDGADEIAPGLALIKGMGGALLREKIVERVAKEFIVIADH 124
Query: 164 SKLVSGLGGSKLAMPVEVVQFCWKFNLVRLQDLFRELGCEAKLREGENGKPYITDNFNYI 223
+K V LG + +PVE+V F ++ L + D LG E +LR + + Y TD + I
Sbjct: 125 TKKVPVLG--RGPVPVEIVPFGYRATLKAIAD----LGGEPELRM-DGDEFYFTDGGHLI 177
Query: 224 IDLYFETPIKDGVSAGTEIGKLEGVVEHGLFLDMATAVIIAGKTGVE 270
D F PI D + + ++ GVVE GLF+ MAT ++AG GVE
Sbjct: 178 ADCRF-GPIGDPLGLHRALLEIPGVVETGLFVGMATRALVAGPFGVE 223
>pdb|1UJ4|A Chain A, Crystal Structure Of Thermus Thermophilus
Ribose-5-phosphate Isomerase
pdb|1UJ6|A Chain A, Crystal Structure Of Thermus Thermophilus
Ribose-5-Phosphate Isomerase Complexed With
Arabinose-5-Phosphate
Length = 227
Score = 164 bits (416), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 103/227 (45%), Positives = 140/227 (61%), Gaps = 9/227 (3%)
Query: 44 DDLKKLAADKAVDYVKSGMALGLGTGSTAAFVVDRIGQLLKTGELRDIVGIPTSKRTEEQ 103
+ KK AA A+ YV+ G +GLGTGSTA + V + + L+ GEL+ +VG+PTS+ TEE
Sbjct: 6 ESYKKEAAHAAIAYVQDGXVVGLGTGSTARYAVLELARRLREGELKGVVGVPTSRATEEL 65
Query: 104 AKSLNIPLTTLDDHPSLDLAIDGADEVDPELNLVKGRGGALLREKMVEAASKSFVVVADE 163
AK IPL L +DLAIDGADE+ P L L+KG GGALLREK+VE +K F+V+AD
Sbjct: 66 AKREGIPLVDLPPE-GVDLAIDGADEIAPGLALIKGXGGALLREKIVERVAKEFIVIADH 124
Query: 164 SKLVSGLGGSKLAMPVEVVQFCWKFNLVRLQDLFRELGCEAKLREGENGKPYITDNFNYI 223
+K V LG + +PVE+V F ++ L + D LG E +LR + + Y TD + I
Sbjct: 125 TKKVPVLG--RGPVPVEIVPFGYRATLKAIAD----LGGEPELRX-DGDEFYFTDGGHLI 177
Query: 224 IDLYFETPIKDGVSAGTEIGKLEGVVEHGLFLDMATAVIIAGKTGVE 270
D F PI D + + ++ GVVE GLF+ AT ++AG GVE
Sbjct: 178 ADCRF-GPIGDPLGLHRALLEIPGVVETGLFVGXATRALVAGPFGVE 223
>pdb|4GMK|A Chain A, Crystal Structure Of Ribose 5-Phosphate Isomerase From The
Probiotic Bacterium Lactobacillus Salivarius Ucc118
pdb|4GMK|B Chain B, Crystal Structure Of Ribose 5-Phosphate Isomerase From The
Probiotic Bacterium Lactobacillus Salivarius Ucc118
Length = 228
Score = 160 bits (404), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 99/230 (43%), Positives = 137/230 (59%), Gaps = 8/230 (3%)
Query: 42 TQDDLKKLAADKAVDYVKSGMALGLGTGSTAAFVVDRIGQLLKTGELRDIVGIPTSKRTE 101
QD+LK+L KAV+++K GM +GLGTGST ++VD +G+ + E DIVG+ TS RT
Sbjct: 3 NQDELKQLVGTKAVEWIKDGMIVGLGTGSTVKYMVDALGKRVNE-EGLDIVGVTTSIRTA 61
Query: 102 EQAKSLNIPLTTLDDHPSLDLAIDGADEVDPELNLVKGRGGALLREKMVEAASKSFVVVA 161
EQAKSL I + +D+ +DL IDGADE+ + +KG G ALL EK+V S + +
Sbjct: 62 EQAKSLGIVIKDIDEVDHIDLTIDGADEISSDFQGIKGGGAALLYEKIVATKSNKNMWIV 121
Query: 162 DESKLVSGLGGSKLAMPVEVVQFCWKFNLVRLQDLFRELGCEAKLREGENGKPYITDNFN 221
DESK+V LG + +PVEV+ + R F E G + R+ E+G TD+ N
Sbjct: 122 DESKMVDDLG--QFPLPVEVIPYGSGTVFKR----FEEKGLNPEFRKNEDGSLLHTDSDN 175
Query: 222 YIIDLYFETPIKDGVSAGTEIGKLEGVVEHGLFLDMATAVIIAGKTGVEV 271
YIIDL+ I++ G + GVVEHGLFLD+ VI+ + G EV
Sbjct: 176 YIIDLHL-GKIENPKELGDYLINQVGVVEHGLFLDIVNTVIVGRQDGPEV 224
>pdb|3IXQ|A Chain A, Structure Of Ribose 5-Phosphate Isomerase A From
Methanocaldococcus Jannaschii
pdb|3IXQ|B Chain B, Structure Of Ribose 5-Phosphate Isomerase A From
Methanocaldococcus Jannaschii
pdb|3IXQ|C Chain C, Structure Of Ribose 5-Phosphate Isomerase A From
Methanocaldococcus Jannaschii
pdb|3IXQ|D Chain D, Structure Of Ribose 5-Phosphate Isomerase A From
Methanocaldococcus Jannaschii
Length = 226
Score = 144 bits (364), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 98/236 (41%), Positives = 139/236 (58%), Gaps = 12/236 (5%)
Query: 41 LTQDDLKKLAADKAVDYVKSGMALGLGTGSTAAFVVDRIGQLLKTGELRDIVGIPTSKRT 100
++ +DLK A +AV VK GM +GLGTGSTAA + +G ++ EL + GIPTS
Sbjct: 1 MSNEDLKLKVAKEAVKLVKDGMVIGLGTGSTAALFIRELGNRIREEELT-VFGIPTSFEA 59
Query: 101 EEQAKSLNIPLTTLDDHPSLDLAIDGADEVDP-ELNLVKGRGGALLREKMVEAASKSFVV 159
+ A IPL TLD++ +D+A DGADEV+ L L+KG GG +EK+V+ + FVV
Sbjct: 60 KMLAMQYEIPLVTLDEY-DVDIAFDGADEVEETTLFLIKGGGGCHTQEKIVDYNANEFVV 118
Query: 160 VADESKLVSGLGGSKLAMPVEVVQFCWKFNLVRLQDLFRELGCEAKLREGENGK-PYITD 218
+ DESKLV L G K +PVEV+ ++ + L E+G EA +R G+ + P ITD
Sbjct: 119 LVDESKLVKKL-GEKFPIPVEVIPSAYRVVIRALS----EMGGEAVIRLGDRKRGPVITD 173
Query: 219 NFNYIIDLYFETPIKDGVSAGTEIGKLEGVVEHGLFLDMATAVIIAGKTGVEVKSK 274
N N IID++ I D + EI + GVVE+G+F + V++ K GV+ K
Sbjct: 174 NGNMIIDVFMN--IDDAIELEKEINNIPGVVENGIFTKV-DKVLVGTKKGVKTLKK 226
>pdb|3HHE|A Chain A, Crystal Structure Of Ribose-5-Phosphate Isomerase A From
Bartonella Henselae
pdb|3HHE|B Chain B, Crystal Structure Of Ribose-5-Phosphate Isomerase A From
Bartonella Henselae
Length = 255
Score = 141 bits (356), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 85/232 (36%), Positives = 139/232 (59%), Gaps = 6/232 (2%)
Query: 34 KAQAVPALTQDDLKKLAADKAVDYVKSGMALGLGTGSTAAFVVDRIGQLLKTGELRDIVG 93
+ Q ++ LKK+AA KA+++V+ M LG+G+GST + +G+ + G LR +
Sbjct: 15 QTQGPGSMNVQQLKKMAALKALEFVEDDMRLGIGSGSTVNEFIPLLGERVANG-LR-VTC 72
Query: 94 IPTSKRTEEQAKSLNIPLTTLDDHPSLDLAIDGADEVDPELNLVKGRGGALLREKMVEAA 153
+ TS+ +E+ +P++TL+ P LDL IDGADE+ PE+ L+KG GGALL EK+V +A
Sbjct: 73 VATSQYSEQLCHKFGVPISTLEKIPELDLDIDGADEIGPEMTLIKGGGGALLHEKIVASA 132
Query: 154 SKSFVVVADESKLVSGLGGSKLAMPVEVVQFCWKFNLVRLQDLFRELGCEAKLREGENG- 212
S++ V+ADE+K+V LG A+P+EV F + ++ LG ++ NG
Sbjct: 133 SRAMFVIADETKMVKTLGA--FALPIEVNPFGIHATRIAIEKAADNLGLSGEITLRMNGD 190
Query: 213 KPYITDNFNYIIDLYFETPIKDGVSAGTEIGKLEGVVEHGLFLDMATAVIIA 264
P+ TD ++I D ++ ++ + + + + GVVEHGLFL +A+ I+A
Sbjct: 191 DPFKTDGGHFIFDAFWGRILQPKLLSEALLA-IPGVVEHGLFLGLASRAIVA 241
>pdb|1XTZ|A Chain A, Crystal Structure Of The S. Cerevisiae
D-Ribose-5-Phosphate Isomerase: Comparison With The
Archeal And Bacterial Enzymes
Length = 264
Score = 122 bits (306), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 90/245 (36%), Positives = 134/245 (54%), Gaps = 19/245 (7%)
Query: 44 DDLKKLAADKAVD---YVKSGMALGLGTGSTAAFVVDRIGQLLKTGELRDI----VGIPT 96
+D K+ AA +AVD +G+G+GST +V +RIGQ L + ++ + IPT
Sbjct: 19 EDAKRAAAYRAVDENLKFDDHKIIGIGSGSTVVYVAERIGQYLHDPKFYEVASKFICIPT 78
Query: 97 SKRTEEQAKSLNIPLTTLDDHPSLDLAIDGADEVDPELNLVKGRGGALLREKMVEAASKS 156
++ + L +++ +P +D+A DGADEVD L L+KG G L +EK+V ++K+
Sbjct: 79 GFQSRNLILDNKLQLGSIEQYPRIDIAFDGADEVDENLQLIKGGGACLFQEKLVSTSAKT 138
Query: 157 FVVVADESKLV-SGLGGS-KLAMPVEVVQFCWKFNLVRLQ-DLFRELGCE-AKLREGENG 212
F+VVAD K LG + + +P+E+V + VR++ DL +L E +R+G +
Sbjct: 139 FIVVADSRKKSPKHLGKNWRQGVPIEIVPSSY----VRVKNDLLEQLHAEKVDIRQGGSA 194
Query: 213 K--PYITDNFNYIIDLYFETPIKDGVSAGTEIGKLEGVVEHGLFLDMATAVIIAGKTG-V 269
K P +TDN N+IID F I D EI L GVVE GLF+D A+ G V
Sbjct: 195 KAGPVVTDNNNFIIDADF-GEISDPRKLHREIKLLVGVVETGLFIDNASKAYFGNSDGSV 253
Query: 270 EVKSK 274
EV K
Sbjct: 254 EVTEK 258
>pdb|1M0S|A Chain A, Northeast Structural Genomics Consortium (Nesg Id Ir21)
pdb|1M0S|B Chain B, Northeast Structural Genomics Consortium (Nesg Id Ir21)
Length = 219
Score = 112 bits (280), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 77/227 (33%), Positives = 122/227 (53%), Gaps = 19/227 (8%)
Query: 41 LTQDDLKKLAADKAVDYVKSGMALGLGTGSTAAFVVDRIGQLLKTGELRDIV--GIPTSK 98
+ Q ++KKLAA A+ YVK+ +G+G+GST ++ +G + +D + + SK
Sbjct: 1 MNQLEMKKLAAQAALQYVKADRIVGVGSGSTVNCFIEALGTI------KDKIQGAVAASK 54
Query: 99 RTEEQAKSLNIPLTTLDDHPSLDLAIDGADEVDPELNLVKGRGGALLREKMVEAASKSFV 158
+EE + I + +D SLD+ +DGADE++P+ ++KG G AL REK+V A +K F+
Sbjct: 55 ESEELLRKQGIEVFNANDVSSLDIYVDGADEINPQKMMIKGGGAALTREKIVAALAKKFI 114
Query: 159 VVADESKLVSGLGGSKLAMPVEVVQFCWKFNLVRLQDLFRELGCEAKLREGENGKPYITD 218
+ D SK V L GS +PVEV+ ++ LG + REG +TD
Sbjct: 115 CIVDSSKQVDVL-GSTFPLPVEVIPMARS----QVGRKLAALGGSPEYREG-----VVTD 164
Query: 219 NFNYIIDLYFETPIKDGVSAGTEIGKLEGVVEHGLFLDMATAVIIAG 265
N N I+D++ I + V E+ + GVV +G+F V+I G
Sbjct: 165 NGNVILDVH-NFSILNPVEIEKELNNVAGVVTNGIFALRGADVVIVG 210
>pdb|3KWM|A Chain A, Crystal Structure Of Ribose-5-Isomerase A
pdb|3KWM|B Chain B, Crystal Structure Of Ribose-5-Isomerase A
pdb|3KWM|C Chain C, Crystal Structure Of Ribose-5-Isomerase A
pdb|3KWM|D Chain D, Crystal Structure Of Ribose-5-Isomerase A
pdb|4IO1|A Chain A, Crystal Structure Of Ribose-5-isomerase A From Francisella
Tularensis
pdb|4IO1|B Chain B, Crystal Structure Of Ribose-5-isomerase A From Francisella
Tularensis
Length = 224
Score = 111 bits (278), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 81/233 (34%), Positives = 126/233 (54%), Gaps = 31/233 (13%)
Query: 42 TQDDLKKLAADKAVDYVKSGMALGLGTGSTAAFVVDRIGQLLKTGELRDIVG--IPTSKR 99
QD+LKKLAA +A + + + LG+GTGST F+++ + RD + + +S+
Sbjct: 8 NQDELKKLAATEAAKSITTEITLGVGTGSTVGFLIEELVNY------RDKIKTVVSSSED 61
Query: 100 TEEQAKSLNIPLTTLDDHPSLDLAIDGADEVDPELNLVKGRGGALLREKMVEAASKSFVV 159
+ + K+L + L+ +DL IDGADE + L+KG G AL REK+ AA+K F+
Sbjct: 62 STRKLKALGFDVVDLNYAGEIDLYIDGADECNNHKELIKGGGAALTREKICVAAAKKFIC 121
Query: 160 VADESKLVSGLGGSKLAMPVEVVQFCWKF---NLVRL--QDLFRELGCEAKLREGENGKP 214
+ DESK V+ LG +P+EV+ + +V+L Q ++RE
Sbjct: 122 IIDESKKVNTLGN--FPLPIEVIPMARSYIARQIVKLGGQPVYRE--------------Q 165
Query: 215 YITDNFNYIIDLYFETPIKDGVSAGTEIGKLEGVVEHGLF-LDMATAVIIAGK 266
ITDN N I+D+Y I + + TE+ ++ GVV +G+F L A VI+A K
Sbjct: 166 TITDNGNVILDVY-NLKIDNPLKLETELNQITGVVTNGIFALKPADTVIMATK 217
>pdb|3U7J|A Chain A, Crystal Structure Of Ribose-5-Phosphate Isomerase A From
Burkholderia Thailandensis
pdb|3UW1|A Chain A, Crystal Structure Of Ribose-5-Phosphate Isomerase A From
Burkholderia Thailandensis With Ribose-5-Phosphate
Length = 239
Score = 110 bits (274), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 86/235 (36%), Positives = 125/235 (53%), Gaps = 16/235 (6%)
Query: 41 LTQDDLKKLAADKAVDYVK----SGMALGLGTGSTAAFVVDRIGQLLKTGELRDIVGIPT 96
+TQD+LK+L + A YV G +G+GTGSTA +D + + + R + +
Sbjct: 9 MTQDELKRLVGEAAARYVTDNVPQGAVIGVGTGSTANCFIDALAAV----KDRYRGAVSS 64
Query: 97 SKRTEEQAKSLNIPLTTLDDHPSLDLAIDGADEVDPELNLVKGRGGALLREKMVEAASKS 156
S T E+ KS I + L++ SL + +DGADE+D ++KG GGAL REK+V + +++
Sbjct: 65 SVATTERLKSHGIRVFDLNEIESLQVYVDGADEIDESGAMIKGGGGALTREKIVASVAET 124
Query: 157 FVVVADESKLVSGLGGSKLAMPVEVVQFCWKFNLVRLQDLFRELGCEAKLREGENGKPYI 216
FV +AD SK V+ LG + +PVEVV RL LG LR ++G PY+
Sbjct: 125 FVCIADASKRVAMLG--QFPLPVEVVPMARTAIGRRLA----ALGGVPVLRVKQDGTPYV 178
Query: 217 TDNFNYIIDLYFETPIKDGVSAGTEIGKLEGVVEHGLFLDMATAVIIAG-KTGVE 270
TDN N I+D+ I D + I GVV GLF + + G + GVE
Sbjct: 179 TDNGNEILDVK-GLRIDDPRALEAAINGWPGVVTVGLFAQRGADLCLLGTEHGVE 232
>pdb|1KS2|A Chain A, Crystal Structure Analysis Of The Rpia, Structural
Genomics, Protein Ec1268.
pdb|1KS2|B Chain B, Crystal Structure Analysis Of The Rpia, Structural
Genomics, Protein Ec1268
Length = 219
Score = 110 bits (274), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 79/225 (35%), Positives = 122/225 (54%), Gaps = 16/225 (7%)
Query: 41 LTQDDLKKLAADKAVDYVKSGMALGLGTGSTAAFVVDRIGQLLKTGELRDIVGIPTSKRT 100
+TQD+LKK A+ YV+ G +G+GTGSTAA +D +G G++ V +S +
Sbjct: 1 MTQDELKKAVGWAALQYVQPGTIVGVGTGSTAAHFIDALGT--XKGQIEGAV--SSSDAS 56
Query: 101 EEQAKSLNIPLTTLDDHPSLDLAIDGADEVDPELNLVKGRGGALLREKMVEAASKSFVVV 160
E+ KSL I + L++ SL + +DGADE++ +KG G AL REK++ + ++ F+ +
Sbjct: 57 TEKLKSLGIHVFDLNEVDSLGIYVDGADEINGHXQXIKGGGAALTREKIIASVAEKFICI 116
Query: 161 ADESKLVSGLGGSKLAMPVEVVQFCWKFNLVRLQDLFRELGCEAKLREGENGKPYITDNF 220
AD SK V LG K +PVEV+ +L +LG + R+G +TDN
Sbjct: 117 ADASKQVDILG--KFPLPVEVIPXARSAVARQL----VKLGGRPEYRQG-----VVTDNG 165
Query: 221 NYIIDLYFETPIKDGVSAGTEIGKLEGVVEHGLFLDMATAVIIAG 265
N I+D++ I D ++ I + GVV GLF + V + G
Sbjct: 166 NVILDVH-GXEILDPIAXENAINAIPGVVTVGLFANRGADVALIG 209
>pdb|1LKZ|A Chain A, Crystal Structure Of D-Ribose-5-Phosphate Isomerase (Rpia)
From Escherichia Coli.
pdb|1LKZ|B Chain B, Crystal Structure Of D-Ribose-5-Phosphate Isomerase (Rpia)
From Escherichia Coli.
pdb|1O8B|A Chain A, Structure Of Escherichia Coli Ribose-5-Phosphate
Isomerase, Rpia, Complexed With Arabinose-5-Phosphate.
pdb|1O8B|B Chain B, Structure Of Escherichia Coli Ribose-5-Phosphate
Isomerase, Rpia, Complexed With Arabinose-5-Phosphate
Length = 219
Score = 108 bits (271), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 79/224 (35%), Positives = 121/224 (54%), Gaps = 16/224 (7%)
Query: 42 TQDDLKKLAADKAVDYVKSGMALGLGTGSTAAFVVDRIGQLLKTGELRDIVGIPTSKRTE 101
TQD+LKK A+ YV+ G +G+GTGSTAA +D +G G++ V +S +
Sbjct: 2 TQDELKKAVGWAALQYVQPGTIVGVGTGSTAAHFIDALGT--XKGQIEGAV--SSSDAST 57
Query: 102 EQAKSLNIPLTTLDDHPSLDLAIDGADEVDPELNLVKGRGGALLREKMVEAASKSFVVVA 161
E+ KSL I + L++ SL + +DGADE++ +KG G AL REK++ + ++ F+ +A
Sbjct: 58 EKLKSLGIHVFDLNEVDSLGIYVDGADEINGHXQXIKGGGAALTREKIIASVAEKFICIA 117
Query: 162 DESKLVSGLGGSKLAMPVEVVQFCWKFNLVRLQDLFRELGCEAKLREGENGKPYITDNFN 221
D SK V LG K +PVEV+ +L +LG + R+G +TDN N
Sbjct: 118 DASKQVDILG--KFPLPVEVIPXARSAVARQL----VKLGGRPEYRQG-----VVTDNGN 166
Query: 222 YIIDLYFETPIKDGVSAGTEIGKLEGVVEHGLFLDMATAVIIAG 265
I+D++ I D ++ I + GVV GLF + V + G
Sbjct: 167 VILDVH-GXEILDPIAXENAINAIPGVVTVGLFANRGADVALIG 209
>pdb|3ENQ|A Chain A, Substrate And Inhibitor Complexes Of Ribose 5-Phosphate
Isomerase A From Vibrio Vulnificus Yj016
pdb|3ENQ|B Chain B, Substrate And Inhibitor Complexes Of Ribose 5-Phosphate
Isomerase A From Vibrio Vulnificus Yj016
pdb|3ENV|A Chain A, Substrate And Inhibitor Complexes Of Ribose 5-Phosphate
Isomerase From Vibrio Vulnificus Yj016
pdb|3ENV|B Chain B, Substrate And Inhibitor Complexes Of Ribose 5-Phosphate
Isomerase From Vibrio Vulnificus Yj016
pdb|3ENW|A Chain A, Substrate And Inhibitor Complexes Of Ribose 5-Phosphate
Isomerase From Vibrio Vulnificus Yj016
pdb|3ENW|B Chain B, Substrate And Inhibitor Complexes Of Ribose 5-Phosphate
Isomerase From Vibrio Vulnificus Yj016
Length = 235
Score = 108 bits (270), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 77/226 (34%), Positives = 123/226 (54%), Gaps = 16/226 (7%)
Query: 40 ALTQDDLKKLAADKAVDYVKSGMALGLGTGSTAAFVVDRIGQLLKTGELRDIVGIPTSKR 99
++TQD++KK A A+ YV+ G +G+GTGST +D +G + + E++ V +S
Sbjct: 17 SMTQDEMKKAAGWAALKYVEKGSIVGVGTGSTVNHFIDALGTMSE--EIKGAV--SSSVA 72
Query: 100 TEEQAKSLNIPLTTLDDHPSLDLAIDGADEVDPELNLVKGRGGALLREKMVEAASKSFVV 159
+ E+ ++L I + ++ SLD+ +DGADE++ + ++KG G AL REK+V A + F+
Sbjct: 73 STEKLEALGIKIFDCNEVASLDIYVDGADEINADREMIKGGGAALTREKIVAAIADKFIC 132
Query: 160 VADESKLVSGLGGSKLAMPVEVVQFCWKFNLVRLQDLFRELGCEAKLREGENGKPYITDN 219
+ D +K V LG +PVEV+ + +L +LG + REG ITDN
Sbjct: 133 IVDGTKAVDVLG--TFPLPVEVIPMARSYVARQLV----KLGGDPCYREG-----VITDN 181
Query: 220 FNYIIDLYFETPIKDGVSAGTEIGKLEGVVEHGLFLDMATAVIIAG 265
N I+D+Y I + +I + GVV GLF V+I G
Sbjct: 182 GNVILDVY-GMKITNPKQLEDQINAIPGVVTVGLFAHRGADVVITG 226
>pdb|1XNG|A Chain A, Crystal Structure Of Nh3-Dependent Nad+ Synthetase From
Helicobacter Pylori
pdb|1XNG|B Chain B, Crystal Structure Of Nh3-Dependent Nad+ Synthetase From
Helicobacter Pylori
pdb|1XNH|A Chain A, Crystal Structure Of Nh3-dependent Nad+ Synthetase From
Helicobacter Pylori
Length = 268
Score = 33.5 bits (75), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 34/75 (45%), Gaps = 16/75 (21%)
Query: 59 KSGMALGLGT--GSTAAFVVDRIGQLLKTGELRDIVGIPTSKRTEEQAKSLNIPLTTLDD 116
KS LG GT G A ++ IG+L KT E A+ LNIP L+
Sbjct: 135 KSERMLGYGTLFGDLAC-AINPIGELFKT-------------EVYELARRLNIPKKILNK 180
Query: 117 HPSLDLAIDGADEVD 131
PS DL + +DE D
Sbjct: 181 PPSADLFVGQSDEKD 195
>pdb|3OU5|A Chain A, Human Mitochondrial Serine Hydroxymethyltransferase 2
Length = 490
Score = 30.0 bits (66), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 37/79 (46%), Gaps = 3/79 (3%)
Query: 39 PALTQDDLKKLAADKAVDYVKSGMALGLGTGSTAAFVVDRIGQLLKTGELRDIVGIPTSK 98
PALT ++ + VD++ G+ +GL S A + D LLK E + +
Sbjct: 415 PALTSRQFREDDFRRVVDFIDEGVNIGLEVKSKTAKLQDFKSFLLKDSETSQRLA-NLRQ 473
Query: 99 RTEEQAKSLNIPLTTLDDH 117
R E+ A++ P+ D+H
Sbjct: 474 RVEQFARAF--PMPGFDEH 490
>pdb|3J21|C Chain C, Promiscuous Behavior Of Proteins In Archaeal Ribosomes
Revealed By Cryo-em: Implications For Evolution Of
Eukaryotic Ribosomes (50s Ribosomal Proteins)
Length = 365
Score = 29.6 bits (65), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 20/84 (23%), Positives = 37/84 (44%), Gaps = 11/84 (13%)
Query: 33 IKAQAVPALTQDDLKKLAADKAVDYVKSGMALGLGTGSTAAFVVDRIGQLLKTGELRDIV 92
IK + P + + + + ++ +Y+K + L R+G++LK GEL D++
Sbjct: 174 IKLKKKPEVMEYAIGGTSVEEKFNYIKEKLGKEL-----------RVGEVLKEGELLDVI 222
Query: 93 GIPTSKRTEEQAKSLNIPLTTLDD 116
+ K T+ K I L D
Sbjct: 223 AVTKGKGTQGPVKRWGIKLRAHKD 246
>pdb|2WIN|I Chain I, C3 Convertase (C3bbb) Stabilized By Scin
pdb|2WIN|J Chain J, C3 Convertase (C3bbb) Stabilized By Scin
pdb|2WIN|K Chain K, C3 Convertase (C3bbb) Stabilized By Scin
pdb|2WIN|L Chain L, C3 Convertase (C3bbb) Stabilized By Scin
Length = 507
Score = 29.3 bits (64), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 25/49 (51%)
Query: 142 GALLREKMVEAASKSFVVVADESKLVSGLGGSKLAMPVEVVQFCWKFNL 190
GA++ E V A+ F V E + +GG K + +EVV F +N+
Sbjct: 254 GAVVSEYFVLTAAHCFTVDDKEHSIKVSVGGEKRDLEIEVVLFHPNYNI 302
>pdb|1RRK|A Chain A, Crystal Structure Analysis Of The Bb Segment Of Factor B
pdb|1RS0|A Chain A, Crystal Structure Analysis Of The Bb Segment Of Factor B
Complexed With Di-Isopropyl-Phosphate (Dip)
pdb|1RTK|A Chain A, Crystal Structure Analysis Of The Bb Segment Of Factor B
Complexed With 4-Guanidinobenzoic Acid
Length = 497
Score = 29.3 bits (64), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 25/49 (51%)
Query: 142 GALLREKMVEAASKSFVVVADESKLVSGLGGSKLAMPVEVVQFCWKFNL 190
GA++ E V A+ F V E + +GG K + +EVV F +N+
Sbjct: 246 GAVVSEYFVLTAAHCFTVDDKEHSIKVSVGGEKRDLEIEVVLFHPNYNI 294
>pdb|1DLE|A Chain A, Factor B Serine Protease Domain
pdb|1DLE|B Chain B, Factor B Serine Protease Domain
Length = 298
Score = 29.3 bits (64), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 25/49 (51%)
Query: 142 GALLREKMVEAASKSFVVVADESKLVSGLGGSKLAMPVEVVQFCWKFNL 190
GA++ E V A+ F V E + +GG K + +EVV F +N+
Sbjct: 47 GAVVSEYFVLTAAHCFTVDDKEHSIKVSVGGEKRDLEIEVVLFHPNYNI 95
>pdb|2XWB|F Chain F, Crystal Structure Of Complement C3b In Complex With
Factors B And D
pdb|2XWB|H Chain H, Crystal Structure Of Complement C3b In Complex With
Factors B And D
Length = 732
Score = 29.3 bits (64), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 25/49 (51%)
Query: 142 GALLREKMVEAASKSFVVVADESKLVSGLGGSKLAMPVEVVQFCWKFNL 190
GA++ E V A+ F V E + +GG K + +EVV F +N+
Sbjct: 479 GAVVSEYFVLTAAHCFTVDDKEHSIKVSVGGEKRDLEIEVVLFHPNYNI 527
>pdb|2OK5|A Chain A, Human Complement Factor B
Length = 752
Score = 29.3 bits (64), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 25/49 (51%)
Query: 142 GALLREKMVEAASKSFVVVADESKLVSGLGGSKLAMPVEVVQFCWKFNL 190
GA++ E V A+ F V E + +GG K + +EVV F +N+
Sbjct: 498 GAVVSEYFVLTAAHCFTVDDKEHSIKVSVGGEKRDLEIEVVLFHPNYNI 546
>pdb|3HRZ|D Chain D, Cobra Venom Factor (Cvf) In Complex With Human Factor B
pdb|3HS0|D Chain D, Cobra Venom Factor (Cvf) In Complex With Human Factor B
pdb|3HS0|I Chain I, Cobra Venom Factor (Cvf) In Complex With Human Factor B
pdb|2XWJ|I Chain I, Crystal Structure Of Complement C3b In Complex With Factor
B
pdb|2XWJ|J Chain J, Crystal Structure Of Complement C3b In Complex With Factor
B
pdb|2XWJ|K Chain K, Crystal Structure Of Complement C3b In Complex With Factor
B
pdb|2XWJ|L Chain L, Crystal Structure Of Complement C3b In Complex With Factor
B
Length = 741
Score = 29.3 bits (64), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 25/49 (51%)
Query: 142 GALLREKMVEAASKSFVVVADESKLVSGLGGSKLAMPVEVVQFCWKFNL 190
GA++ E V A+ F V E + +GG K + +EVV F +N+
Sbjct: 488 GAVVSEYFVLTAAHCFTVDDKEHSIKVSVGGEKRDLEIEVVLFHPNYNI 536
>pdb|1ESC|A Chain A, The Molecular Mechanism Of Enantiorecognition By Esterases
pdb|1ESD|A Chain A, The Molecular Mechanism Of Enantiorecognition By Esterases
pdb|1ESE|A Chain A, The Molecular Mechanism Of Enantiorecognition By Esterases
Length = 306
Score = 28.5 bits (62), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 37/115 (32%), Positives = 50/115 (43%), Gaps = 20/115 (17%)
Query: 8 PTLHHSTSAHFLPRAPKSLRPRAISIKAQAVPALTQ------DDLKKLAADKAVDYVKSG 61
P L + L AP + I A+P L Q D +KK AAD D+V
Sbjct: 187 PRLVPEDTTKCLTAAPGQTQLPFADIPQDALPVLDQIQKRLNDAMKKAAADGGADFVD-- 244
Query: 62 MALGLGTG-STAAFVVDR-IGQLLKTGELRDIVGI-------PTSKRTEEQAKSL 107
L GTG +TA DR IG LL+ +L +++G P K + QAK +
Sbjct: 245 --LYAGTGANTACDGADRGIGGLLEDSQL-ELLGTKIPWYAHPNDKGRDIQAKQV 296
>pdb|3T6V|A Chain A, Crystal Structure Of Laccase From Steccherinum Ochraceum
pdb|3T6V|B Chain B, Crystal Structure Of Laccase From Steccherinum Ochraceum
pdb|3T6V|C Chain C, Crystal Structure Of Laccase From Steccherinum Ochraceum
pdb|3T6W|A Chain A, Crystal Structure Of Steccherinum Ochraceum Laccase
Obtained By Multi- Crystals Composite Data Collection
Technique (10% Dose)
pdb|3T6W|B Chain B, Crystal Structure Of Steccherinum Ochraceum Laccase
Obtained By Multi- Crystals Composite Data Collection
Technique (10% Dose)
pdb|3T6W|C Chain C, Crystal Structure Of Steccherinum Ochraceum Laccase
Obtained By Multi- Crystals Composite Data Collection
Technique (10% Dose)
pdb|3T6X|A Chain A, Crystal Structure Of Steccherinum Ochraceum Laccase
Obtained By Multi- Crystals Composite Data Collection
Technique (20% Dose)
pdb|3T6X|B Chain B, Crystal Structure Of Steccherinum Ochraceum Laccase
Obtained By Multi- Crystals Composite Data Collection
Technique (20% Dose)
pdb|3T6X|C Chain C, Crystal Structure Of Steccherinum Ochraceum Laccase
Obtained By Multi- Crystals Composite Data Collection
Technique (20% Dose)
pdb|3T6Z|A Chain A, Crystal Structure Of Steccherinum Ochraceum Laccase
Obtained By Multi- Crystals Composite Data Collection
Technique (60% Dose)
pdb|3T6Z|B Chain B, Crystal Structure Of Steccherinum Ochraceum Laccase
Obtained By Multi- Crystals Composite Data Collection
Technique (60% Dose)
pdb|3T6Z|C Chain C, Crystal Structure Of Steccherinum Ochraceum Laccase
Obtained By Multi- Crystals Composite Data Collection
Technique (60% Dose)
pdb|3T71|A Chain A, Crystal Structure Of Steccherinum Ochraceum Laccase
Obtained By Multi- Crystals Composite Data Collection
Technique (90% Dose)
pdb|3T71|B Chain B, Crystal Structure Of Steccherinum Ochraceum Laccase
Obtained By Multi- Crystals Composite Data Collection
Technique (90% Dose)
pdb|3T71|C Chain C, Crystal Structure Of Steccherinum Ochraceum Laccase
Obtained By Multi- Crystals Composite Data Collection
Technique (90% Dose)
Length = 495
Score = 27.7 bits (60), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 19/74 (25%), Positives = 35/74 (47%)
Query: 90 DIVGIPTSKRTEEQAKSLNIPLTTLDDHPSLDLAIDGADEVDPELNLVKGRGGALLREKM 149
++ +P S T E K + L ++ P+ D +IDG D E + V + + ++
Sbjct: 182 NVAAVPLSVITVEVGKRYRMRLVSISCDPNYDFSIDGHDMTIIETDGVDSQELTVDEIQI 241
Query: 150 VEAASKSFVVVADE 163
A SFV+ A++
Sbjct: 242 FAAQRYSFVLNANQ 255
>pdb|1FEH|A Chain A, Fe-Only Hydrogenase From Clostridium Pasteurianum
pdb|1C4A|A Chain A, Binding Of Exogenously Added Carbon Monoxide At The Active
Site Of The Fe-Only Hydrogenase (Cpi) From Clostridium
Pasteurianum
pdb|1C4C|A Chain A, Binding Of Exogenously Added Carbon Monoxide At The Active
Site Of The Fe-Only Hydrogenase (Cpi) From Clostridium
Pasteurianum
pdb|3C8Y|A Chain A, 1.39 Angstrom Crystal Structure Of Fe-Only Hydrogenase
Length = 574
Score = 27.7 bits (60), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 35/115 (30%), Positives = 48/115 (41%), Gaps = 21/115 (18%)
Query: 70 STAAFVVDRIGQLLKTGELRDIVGIPTSKRTEEQAKSLNIPLTTLDDHPSLDLAIDGADE 129
++ F DR Q+ K G LRDI + T++ + K IP L+D E
Sbjct: 356 TSKKFEADR-PQMEKDG-LRDIDAVITTRELAKMIKDAKIPFAKLED-----------SE 402
Query: 130 VDPELNLVKGRGGAL-LREKMVEAA---SKSFVVVAD----ESKLVSGLGGSKLA 176
DP + G G ++EAA +K F A+ E K V GL G K A
Sbjct: 403 ADPAMGEYSGAGAIFGATGGVMEAALRSAKDFAENAELEDIEYKQVRGLNGIKEA 457
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.135 0.379
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,860,419
Number of Sequences: 62578
Number of extensions: 328700
Number of successful extensions: 897
Number of sequences better than 100.0: 34
Number of HSP's better than 100.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 830
Number of HSP's gapped (non-prelim): 34
length of query: 274
length of database: 14,973,337
effective HSP length: 97
effective length of query: 177
effective length of database: 8,903,271
effective search space: 1575878967
effective search space used: 1575878967
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (24.3 bits)