RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 024004
(274 letters)
>2f8m_A Ribose 5-phosphate isomerase; structural genomics, PSI, protein
structure initiative, STRU genomics of pathogenic
protozoa consortium; 2.09A {Plasmodium falciparum}
Length = 244
Score = 333 bits (857), Expect = e-116
Identities = 109/235 (46%), Positives = 159/235 (67%), Gaps = 3/235 (1%)
Query: 42 TQDDLKKLAADKAVD-YVKSGMALGLGTGSTAAFVVDRIGQLLKTGELRDIVGIPTSKRT 100
D LKK+ A KAVD YV+S M +GLGTGST +V++RI LLK+G+L+D+V IPTS T
Sbjct: 8 HMDSLKKIVAYKAVDEYVQSNMTIGLGTGSTVFYVLERIDNLLKSGKLKDVVCIPTSIDT 67
Query: 101 EEQAKSLNIPLTTLDDHPSLDLAIDGADEVDPELNLVKGRGGALLREKMVEAASKSFVVV 160
E +A+ L IPLTTL+ H ++D+ IDG DE+D LNL+KGRGGAL+REK+V ++S +++
Sbjct: 68 ELKARKLGIPLTTLEKHSNIDITIDGTDEIDLNLNLIKGRGGALVREKLVASSSSLLIII 127
Query: 161 ADESKLVSGLGGSKLAMPVEVVQFCWKFNLVRLQDLFRELGCEAKLREGENGKPYITDNF 220
DESKL + G A+P+E++ F ++ + L ++ GC K+R+ NG+ +ITDN
Sbjct: 128 GDESKLCTNGLGMTGAVPIEILTFGYEKIIENLLKIYTLKGCTYKIRKR-NGEIFITDNK 186
Query: 221 NYIIDLYFETPIKDGVSAGTEIGKLEGVVEHGLFLDMATAVIIAGKTG-VEVKSK 274
NYI+D +F PI+D + T I GVV+HG+F++M +I+ G V +K
Sbjct: 187 NYIVDFFFTEPIQDLLETCTRIKMTTGVVDHGIFVNMTNVALISKHDGTVLTLNK 241
>1lk5_A D-ribose-5-phosphate isomerase; alpha/beta structure; 1.75A
{Pyrococcus horikoshii} SCOP: c.124.1.4 d.58.40.1 PDB:
1lk7_A*
Length = 229
Score = 325 bits (837), Expect = e-114
Identities = 97/235 (41%), Positives = 149/235 (63%), Gaps = 7/235 (2%)
Query: 41 LTQDDLKKLAADKAVDYVKSGMALGLGTGSTAAFVVDRIGQLLKTGELRDIVGIPTSKRT 100
+ +++KK+AA +A+ +++ M +GLGTGST A+ + +G+ LK GE+ DIVG+PTS +
Sbjct: 1 MNVEEMKKIAAKEALKFIEDDMVIGLGTGSTTAYFIKLLGEKLKRGEISDIVGVPTSYQA 60
Query: 101 EEQAKSLNIPLTTLDDHPSLDLAIDGADEVDPELNLVKGRGGALLREKMVEAASKSFVVV 160
+ A +IP+ +LD ++D+A+DGADEVDP LNL+KGRG AL EK++E + +F+V+
Sbjct: 61 KLLAIEHDIPIASLDQVDAIDVAVDGADEVDPNLNLIKGRGAALTMEKIIEYRAGTFIVL 120
Query: 161 ADESKLVSGLGGSKLAMPVEVVQFCWKFNLVRLQDLFRELGCEAKLREGENG-KPYITDN 219
DE KLV L K+ +P+EV+ WK + L +A+LR G N P ITDN
Sbjct: 121 VDERKLVDYLCQ-KMPVPIEVIPQAWKAIIEELS----IFNAKAELRMGVNKDGPVITDN 175
Query: 220 FNYIIDLYFETPIKDGVSAGTEIGKLEGVVEHGLFLDMATAVIIAGKTGVEVKSK 274
N+IID F I D + E+ + GV+E+G+F D+A VI+ + GV+ +
Sbjct: 176 GNFIIDAKFP-RIDDPLDMEIELNTIPGVIENGIFADIADIVIVGTREGVKKLER 229
>3hhe_A Ribose-5-phosphate isomerase A; niaid, ssgcid, decode, SBRI, UW,
STRU genomics, seattle structural genomics center for
infectious; HET: 5RP; 2.30A {Bartonella henselae}
Length = 255
Score = 318 bits (818), Expect = e-110
Identities = 85/249 (34%), Positives = 137/249 (55%), Gaps = 7/249 (2%)
Query: 25 SLRPRAISIKAQAVPALTQDDLKKLAADKAVDYVKSGMALGLGTGSTAAFVVDRIGQLLK 84
+ + Q ++ LKK+AA KA+++V+ M LG+G+GST + +G+ +
Sbjct: 6 HHHMGTLEAQTQGPGSMNVQQLKKMAALKALEFVEDDMRLGIGSGSTVNEFIPLLGERVA 65
Query: 85 TGELRDIVGIPTSKRTEEQAKSLNIPLTTLDDHPSLDLAIDGADEVDPELNLVKGRGGAL 144
G + + TS+ +E+ +P++TL+ P LDL IDGADE+ PE+ L+KG GGAL
Sbjct: 66 NG--LRVTCVATSQYSEQLCHKFGVPISTLEKIPELDLDIDGADEIGPEMTLIKGGGGAL 123
Query: 145 LREKMVEAASKSFVVVADESKLVSGLGGSKLAMPVEVVQFCWKFNLVRLQDLFRELGCEA 204
L EK+V +AS++ V+ADE+K+V LG L P+EV F + ++ LG
Sbjct: 124 LHEKIVASASRAMFVIADETKMVKTLGAFAL--PIEVNPFGIHATRIAIEKAADNLGLSG 181
Query: 205 KLREGENG-KPYITDNFNYIIDLYFETPIKDGVSAGTEIGKLEGVVEHGLFLDMATAVII 263
++ NG P+ TD ++I D ++ I + + GVVEHGLFL +A+ I+
Sbjct: 182 EITLRMNGDDPFKTDGGHFIFDAFWG-RILQPKLLSEALLAIPGVVEHGLFLGLASRAIV 240
Query: 264 AGKTG-VEV 271
A ++V
Sbjct: 241 AMADSQIKV 249
>1uj6_A Ribose 5-phosphate isomerase; enzyme-inhibitor complex, riken
structural genomics/proteomi initiative, RSGI,
structural genomics; HET: A5P; 1.74A {Thermus
thermophilus} SCOP: c.124.1.4 d.58.40.1 PDB: 1uj5_A*
1uj4_A*
Length = 227
Score = 316 bits (813), Expect = e-110
Identities = 104/230 (45%), Positives = 140/230 (60%), Gaps = 9/230 (3%)
Query: 42 TQDDLKKLAADKAVDYVKSGMALGLGTGSTAAFVVDRIGQLLKTGELRDIVGIPTSKRTE 101
+ KK AA A+ YV+ GM +GLGTGSTA + V + + L+ GEL+ +VG+PTS+ TE
Sbjct: 4 PLESYKKEAAHAAIAYVQDGMVVGLGTGSTARYAVLELARRLREGELKGVVGVPTSRATE 63
Query: 102 EQAKSLNIPLTTLDDHPSLDLAIDGADEVDPELNLVKGRGGALLREKMVEAASKSFVVVA 161
E AK IPL L +DLAIDGADE+ P L L+KG GGALLREK+VE +K F+V+A
Sbjct: 64 ELAKREGIPLVDLPPE-GVDLAIDGADEIAPGLALIKGMGGALLREKIVERVAKEFIVIA 122
Query: 162 DESKLVSGLGGSKLAMPVEVVQFCWKFNLVRLQDLFRELGCEAKLREGENGKPYITDNFN 221
D +K V LG + PVE+V F ++ L + +LG E +LR + Y TD +
Sbjct: 123 DHTKKVPVLGRGPV--PVEIVPFGYRATLKAIA----DLGGEPELRMD-GDEFYFTDGGH 175
Query: 222 YIIDLYFETPIKDGVSAGTEIGKLEGVVEHGLFLDMATAVIIAGKTGVEV 271
I D F PI D + + ++ GVVE GLF+ MAT ++AG GVE
Sbjct: 176 LIADCRFG-PIGDPLGLHRALLEIPGVVETGLFVGMATRALVAGPFGVEE 224
>3l7o_A Ribose-5-phosphate isomerase A; RPIA; 1.70A {Streptococcus mutans}
Length = 225
Score = 313 bits (804), Expect = e-109
Identities = 101/231 (43%), Positives = 144/231 (62%), Gaps = 9/231 (3%)
Query: 44 DDLKKLAADKAVDYVKSGMALGLGTGSTAAFVVDRIGQLLKTGELRDIVGIPTSKRTEEQ 103
++LKK+A +A YV+ GM +GLGTGSTA + V+ +G+ ++ L ++G+ TS RT Q
Sbjct: 2 EELKKIAGVRAAQYVEDGMIVGLGTGSTAYYFVEEVGRRVQEEGL-QVIGVTTSSRTTAQ 60
Query: 104 AKSLNIPLTTLDDHPSLDLAIDGADEVDPELNLVKGRGGALLREKMVEAASKSFVVVADE 163
A++L IPL ++D+ S+D+ +DGADEVDP N +KG GGALL EK+V +K ++ V DE
Sbjct: 61 AQALGIPLKSIDEVDSVDVTVDGADEVDPNFNGIKGGGGALLMEKIVGTLTKDYIWVVDE 120
Query: 164 SKLVSGLGGSKLAMPVEVVQFCWKFNLVRLQDLFRELGCEAKLREGENGKPYITDNFNYI 223
SK+V LG +L PVEVVQ+ + L F + G + RE +G ++TD N+I
Sbjct: 121 SKMVDTLGAFRL--PVEVVQYGAER----LFREFEKKGYKPSFREY-DGVRFVTDMKNFI 173
Query: 224 IDLYFETPIKDGVSAGTEIGKLEGVVEHGLFLDMATAVIIAGKTGVEVKSK 274
IDL I D ++ G + GVVEHGLF M VI+AGK GV +
Sbjct: 174 IDLDLG-SIPDPIAFGNMLDHQVGVVEHGLFNGMVNRVIVAGKDGVRILEA 223
>1xtz_A Ribose-5-phosphate isomerase; yeast; 2.10A {Saccharomyces
cerevisiae}
Length = 264
Score = 308 bits (791), Expect = e-106
Identities = 86/255 (33%), Positives = 126/255 (49%), Gaps = 15/255 (5%)
Query: 32 SIKAQAVPALTQDDLKKLAADKAVD---YVKSGMALGLGTGSTAAFVVDRIGQLLKTGEL 88
I A +D K+ AA +AVD +G+G+GST +V +RIGQ L +
Sbjct: 7 KIDALESLGNPLEDAKRAAAYRAVDENLKFDDHKIIGIGSGSTVVYVAERIGQYLHDPKF 66
Query: 89 R----DIVGIPTSKRTEEQAKSLNIPLTTLDDHPSLDLAIDGADEVDPELNLVKGRGGAL 144
+ IPT ++ + L +++ +P +D+A DGADEVD L L+KG G L
Sbjct: 67 YEVASKFICIPTGFQSRNLILDNKLQLGSIEQYPRIDIAFDGADEVDENLQLIKGGGACL 126
Query: 145 LREKMVEAASKSFVVVADESKLVSGLGGS--KLAMPVEVVQFCWKFNLVRLQDLFRELGC 202
+EK+V ++K+F+VVAD K G + +P+E+V + L +
Sbjct: 127 FQEKLVSTSAKTFIVVADSRKKSPKHLGKNWRQGVPIEIVPSSYVRVKNDLLEQL--HAE 184
Query: 203 EAKLREGENGK--PYITDNFNYIIDLYFETPIKDGVSAGTEIGKLEGVVEHGLFLDMATA 260
+ +R+G + K P +TDN N+IID F I D EI L GVVE GLF+D A+
Sbjct: 185 KVDIRQGGSAKAGPVVTDNNNFIIDADFG-EISDPRKLHREIKLLVGVVETGLFIDNASK 243
Query: 261 VIIAGKTG-VEVKSK 274
G VEV K
Sbjct: 244 AYFGNSDGSVEVTEK 258
>2pjm_A Ribose-5-phosphate isomerase A; 3D-structure, structural genomics,
pentose phosphate pathway, carbon fixation, NPPSFA;
1.78A {Methanocaldococcus jannaschii} PDB: 3ixq_A*
Length = 226
Score = 301 bits (773), Expect = e-104
Identities = 98/236 (41%), Positives = 138/236 (58%), Gaps = 12/236 (5%)
Query: 41 LTQDDLKKLAADKAVDYVKSGMALGLGTGSTAAFVVDRIGQLLKTGELRDIVGIPTSKRT 100
++ +DLK A +AV VK GM +GLGTGSTAA + +G ++ EL + GIPTS
Sbjct: 1 MSNEDLKLKVAKEAVKLVKDGMVIGLGTGSTAALFIRELGNRIREEEL-TVFGIPTSFEA 59
Query: 101 EEQAKSLNIPLTTLDDHPSLDLAIDGADEVD-PELNLVKGRGGALLREKMVEAASKSFVV 159
+ A IPL TLD++ +D+A DGADEV+ L L+KG GG +EK+V+ + FVV
Sbjct: 60 KMLAMQYEIPLVTLDEYD-VDIAFDGADEVEETTLFLIKGGGGCHTQEKIVDYNANEFVV 118
Query: 160 VADESKLVSGLGGSKLAMPVEVVQFCWKFNLVRLQDLFRELGCEAKLREGENG-KPYITD 218
+ DESKLV L G K +PVEV+ ++ + L E+G EA +R G+ P ITD
Sbjct: 119 LVDESKLVKKL-GEKFPIPVEVIPSAYRVVIRALS----EMGGEAVIRLGDRKRGPVITD 173
Query: 219 NFNYIIDLYFETPIKDGVSAGTEIGKLEGVVEHGLFLDMATAVIIAGKTGVEVKSK 274
N N IID++ I D + EI + GVVE+G+F + V++ K GV+ K
Sbjct: 174 NGNMIIDVFM--NIDDAIELEKEINNIPGVVENGIFTKVDK-VLVGTKKGVKTLKK 226
>3uw1_A Ribose-5-phosphate isomerase A; ssgcid, seattle structural genomics
center for infectious DI isomerase, ribose isomerase;
HET: R5P; 1.71A {Burkholderia thailandensis} PDB:
3u7j_A*
Length = 239
Score = 297 bits (764), Expect = e-102
Identities = 87/242 (35%), Positives = 124/242 (51%), Gaps = 16/242 (6%)
Query: 35 AQAVPALTQDDLKKLAADKAVDYVK----SGMALGLGTGSTAAFVVDRIGQLLKTGELRD 90
+TQD+LK+L + A YV G +G+GTGSTA +D + + + R
Sbjct: 3 GSMTLLMTQDELKRLVGEAAARYVTDNVPQGAVIGVGTGSTANCFIDALAAV----KDRY 58
Query: 91 IVGIPTSKRTEEQAKSLNIPLTTLDDHPSLDLAIDGADEVDPELNLVKGRGGALLREKMV 150
+ +S T E+ KS I + L++ SL + +DGADE+D ++KG GGAL REK+V
Sbjct: 59 RGAVSSSVATTERLKSHGIRVFDLNEIESLQVYVDGADEIDESGAMIKGGGGALTREKIV 118
Query: 151 EAASKSFVVVADESKLVSGLGGSKLAMPVEVVQFCWKFNLVRLQDLFRELGCEAKLREGE 210
+ +++FV +AD SK V+ LG L PVEVV RL LG LR +
Sbjct: 119 ASVAETFVCIADASKRVAMLGQFPL--PVEVVPMARTAIGRRLA----ALGGVPVLRVKQ 172
Query: 211 NGKPYITDNFNYIIDLYFETPIKDGVSAGTEIGKLEGVVEHGLFLDM-ATAVIIAGKTGV 269
+G PY+TDN N I+D+ I D + I GVV GLF A ++ + GV
Sbjct: 173 DGTPYVTDNGNEILDVKGL-RIDDPRALEAAINGWPGVVTVGLFAQRGADLCLLGTEHGV 231
Query: 270 EV 271
E
Sbjct: 232 ET 233
>1m0s_A Ribose-5-phosphate isomerase A; D-ribose 5-phosphate isomerase,
northeast structural genomics consortium, IR21,
structural genomics, PSI; HET: CIT; 1.90A {Haemophilus
influenzae} SCOP: c.124.1.4 d.58.40.1
Length = 219
Score = 294 bits (756), Expect = e-102
Identities = 79/232 (34%), Positives = 124/232 (53%), Gaps = 16/232 (6%)
Query: 41 LTQDDLKKLAADKAVDYVKSGMALGLGTGSTAAFVVDRIGQLLKTGELRDIVGIPTSKRT 100
+ Q ++KKLAA A+ YVK+ +G+G+GST ++ +G + + + + SK +
Sbjct: 1 MNQLEMKKLAAQAALQYVKADRIVGVGSGSTVNCFIEALGTI----KDKIQGAVAASKES 56
Query: 101 EEQAKSLNIPLTTLDDHPSLDLAIDGADEVDPELNLVKGRGGALLREKMVEAASKSFVVV 160
EE + I + +D SLD+ +DGADE++P+ ++KG G AL REK+V A +K F+ +
Sbjct: 57 EELLRKQGIEVFNANDVSSLDIYVDGADEINPQKMMIKGGGAALTREKIVAALAKKFICI 116
Query: 161 ADESKLVSGLGGSKLAMPVEVVQFCWKFNLVRLQDLFRELGCEAKLREGENGKPYITDNF 220
D SK V L GS +PVEV+ +L LG + RE +TDN
Sbjct: 117 VDSSKQVDVL-GSTFPLPVEVIPMARSQVGRKLA----ALGGSPEYRE-----GVVTDNG 166
Query: 221 NYIIDLYFETPIKDGVSAGTEIGKLEGVVEHGLF-LDMATAVIIAGKTGVEV 271
N I+D++ I + V E+ + GVV +G+F L A VI+ G +V
Sbjct: 167 NVILDVHNF-SILNPVEIEKELNNVAGVVTNGIFALRGADVVIVGTPEGAKV 217
>1o8b_A Ribose 5-phosphate isomerase; RPIA, PSI, protein ST initiative,
MCSG, midwest center for structural genomics; HET: ABF;
1.25A {Escherichia coli} SCOP: c.124.1.4 d.58.40.1 PDB:
1lkz_A 1ks2_A* 3enq_A 3env_A* 3enw_A*
Length = 219
Score = 294 bits (755), Expect = e-101
Identities = 79/235 (33%), Positives = 126/235 (53%), Gaps = 17/235 (7%)
Query: 41 LTQDDLKKLAADKAVDYVKSGMALGLGTGSTAAFVVDRIGQLLKTGELRDIVGIPTSKRT 100
+TQD+LKK A+ YV+ G +G+GTGSTAA +D +G + + + + +S +
Sbjct: 1 MTQDELKKAVGWAALQYVQPGTIVGVGTGSTAAHFIDALGTM----KGQIEGAVSSSDAS 56
Query: 101 EEQAKSLNIPLTTLDDHPSLDLAIDGADEVDPELNLVKGRGGALLREKMVEAASKSFVVV 160
E+ KSL I + L++ SL + +DGADE++ + ++KG G AL REK++ + ++ F+ +
Sbjct: 57 TEKLKSLGIHVFDLNEVDSLGIYVDGADEINGHMQMIKGGGAALTREKIIASVAEKFICI 116
Query: 161 ADESKLVSGLGGSKLAMPVEVVQFCWKFNLVRLQDLFRELGCEAKLREGENGKPYITDNF 220
AD SK V LG L PVEV+ +L +LG + R+ +TDN
Sbjct: 117 ADASKQVDILGKFPL--PVEVIPMARSAVARQLV----KLGGRPEYRQ-----GVVTDNG 165
Query: 221 NYIIDLYFETPIKDGVSAGTEIGKLEGVVEHGLFLDM-ATAVIIAGKTGVEVKSK 274
N I+D++ I D ++ I + GVV GLF + A +I GV+ K
Sbjct: 166 NVILDVHGM-EILDPIAMENAINAIPGVVTVGLFANRGADVALIGTPDGVKTIVK 219
>3kwm_A Ribose-5-phosphate isomerase A; structural genomics, IDP02119,
center for structu genomics of infectious diseases,
csgid; 2.32A {Francisella tularensis subsp}
Length = 224
Score = 291 bits (747), Expect = e-100
Identities = 79/231 (34%), Positives = 124/231 (53%), Gaps = 17/231 (7%)
Query: 42 TQDDLKKLAADKAVDYVKSGMALGLGTGSTAAFVVDRIGQLLKTGELRDIVGIPTSKRTE 101
QD+LKKLAA +A + + + LG+GTGST F+++ + + + +S+ +
Sbjct: 8 NQDELKKLAATEAAKSITTEITLGVGTGSTVGFLIEELVNY----RDKIKTVVSSSEDST 63
Query: 102 EQAKSLNIPLTTLDDHPSLDLAIDGADEVDPELNLVKGRGGALLREKMVEAASKSFVVVA 161
+ K+L + L+ +DL IDGADE + L+KG G AL REK+ AA+K F+ +
Sbjct: 64 RKLKALGFDVVDLNYAGEIDLYIDGADECNNHKELIKGGGAALTREKICVAAAKKFICII 123
Query: 162 DESKLVSGLGGSKLAMPVEVVQFCWKFNLVRLQDLFRELGCEAKLREGENGKPYITDNFN 221
DESK V+ LG +P+EV+ + ++ +LG + RE ITDN N
Sbjct: 124 DESKKVNTLG--NFPLPIEVIPMARSYIARQIV----KLGGQPVYRE-----QTITDNGN 172
Query: 222 YIIDLYFETPIKDGVSAGTEIGKLEGVVEHGLF-LDMATAVIIAGKTGVEV 271
I+D+Y I + + TE+ ++ GVV +G+F L A VI+A K V
Sbjct: 173 VILDVYNL-KIDNPLKLETELNQITGVVTNGIFALKPADTVIMATKDSNIV 222
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 48.7 bits (115), Expect = 1e-06
Identities = 48/296 (16%), Positives = 75/296 (25%), Gaps = 115/296 (38%)
Query: 3 SLS-FLPTLHHSTSAHFLPRAPKSLRPRAISIKAQAVPALTQDDL------KKLAADKAV 55
S L L LPR + PR +SI + +D L K + DK
Sbjct: 303 VKSLLLKYLDCRPQD--LPREVLTTNPRRLSI----IAESIRDGLATWDNWKHVNCDK-- 354
Query: 56 DYVKSGMALGLGTGSTAAFVVDRIGQLLKTGELR----DIVGIPTSKRTEEQAKSLNIPL 111
+ + + L +L+ E R + P S +IP
Sbjct: 355 --LTTIIESSL--------------NVLEPAEYRKMFDRLSVFP---------PSAHIPT 389
Query: 112 TTLDDHPSLDLAI--DGADEVDPELNLVKGRGGALLREKMVEAASKSFVV---------- 159
L ++ + D + + K L + +VE K +
Sbjct: 390 ILL--------SLIWFDVIKSDVMVVVNK-----LHKYSLVEKQPKESTISIPSIYLELK 436
Query: 160 ------------VADESKLVSGLGGSKLAMPVEVVQFCW-------KFNLVRLQDLFREL 200
+ D + L P F LFR +
Sbjct: 437 VKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMV 496
Query: 201 G-----CEAKLREG-----------------ENGKPYITDNFNYIIDLYFETPIKD 234
E K+R + KPYI DN D +E +
Sbjct: 497 FLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDN-----DPKYERLVNA 547
Score = 42.1 bits (98), Expect = 1e-04
Identities = 23/204 (11%), Positives = 48/204 (23%), Gaps = 62/204 (30%)
Query: 75 VVDRIGQLLKTGELRDIVGIPTSKRTEEQAKSLNIPLTTLDDHPS--LDLAIDGADEVD- 131
V D +L E+ I+ L TL + ++ ++
Sbjct: 38 VQDMPKSILSKEEIDHIIMSKD---AVSGTLRL---FWTLLSKQEEMVQKFVEEVLRINY 91
Query: 132 -------------PELNLVK--------GRGGALL------REKMVEAASKSFVVVADES 164
P + + R + ++ + +
Sbjct: 92 KFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAK 151
Query: 165 KL-VSGLGGS-KLAMPVEVVQ------------FCW-KFN--------LVRLQDLFRELG 201
+ + G+ GS K + ++V F W L LQ L ++
Sbjct: 152 NVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIF-WLNLKNCNSPETVLEMLQKLLYQID 210
Query: 202 CEAKLREGENGKPYITDNFNYIID 225
+ I + I
Sbjct: 211 PN--WTSRSDHSSNIKLRIHSIQA 232
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 39.6 bits (92), Expect = 0.001
Identities = 53/340 (15%), Positives = 99/340 (29%), Gaps = 124/340 (36%)
Query: 4 LSFLPTL-HHSTSAHFLPRAPKSLRP--RAISIKAQAVP-------ALTQDDLKKLAADK 53
L + L H+ +A L P LR + + +Q + + + + K
Sbjct: 240 LIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFV-SVRK 298
Query: 54 AVDYVKSGMALGLGTGSTAAFVVDRIGQLLKTGELRDIVGIPTS---------KRTEEQA 104
A+ +G A+ + + L + G+P+ ++ ++
Sbjct: 299 AITV-----LFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYV 353
Query: 105 KSLNIPLTTLDDHPSLDLA-IDGADEV----DPE----LNL----VKGRGG-----ALLR 146
N + L ++++ ++GA + P+ LNL K G
Sbjct: 354 NKTN---SHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFS 410
Query: 147 EK-------------------MVEAASKSFVVVADESKLVSGLGGSKLAMPVEVVQFCWK 187
E+ +V A+ + D K + +PV
Sbjct: 411 ERKLKFSNRFLPVASPFHSHLLVPASDL---INKDLVKNNVSFNAKDIQIPV-------- 459
Query: 188 FNLVRLQDLFRELGCEAKLREGENGKPYITDNFNYIIDLYFETPIK-------------D 234
++ DL R L I++ I+D P+K D
Sbjct: 460 YDTFDGSDL-RVLSGS------------ISER---IVDCIIRLPVKWETTTQFKATHILD 503
Query: 235 ---GVSAGTEIGKLEGVVEHGLFLDMATAVIIAGKTGVEV 271
G ++G +G L T G TGV V
Sbjct: 504 FGPGGASG--LGVL-------------THRNKDG-TGVRV 527
Score = 37.3 bits (86), Expect = 0.005
Identities = 49/285 (17%), Positives = 79/285 (27%), Gaps = 114/285 (40%)
Query: 83 LKTGELRDIVGIPT------SKRTEEQAKSLNIPLTTL--DDHPS--LDLAID--G--AD 128
L G L ++ +PT S+ E+ K L P DD P+ +L G +
Sbjct: 11 LSHGSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKFLGYVSS 70
Query: 129 EVDPE------------------------------LNLVKGRGGALLREKMV-------E 151
V+P L++ L++ K +
Sbjct: 71 LVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITAR 130
Query: 152 AASKSFVVVADESKLVSGL--GGSKLAMPVEVVQF--------CWKFNLVRLQDLF---- 197
+K S L + G ++L V F ++ L+DL+
Sbjct: 131 IMAKRPFDKKSNSALFRAVGEGNAQL-----VAIFGGQGNTDDYFE----ELRDLYQTYH 181
Query: 198 ---REL--GCEAKL----REGENGKPYITDNFN---------------Y---------II 224
+L L R + + T N Y +I
Sbjct: 182 VLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLI 241
Query: 225 DL-----YFETPIKDGVSAGTEIGKLEGVVEHGLFLDMATAVIIA 264
+ Y T G + G L+G H + TAV IA
Sbjct: 242 GVIQLAHYVVTAKLLGFTPGELRSYLKGATGHS--QGLVTAVAIA 284
Score = 31.2 bits (70), Expect = 0.46
Identities = 27/160 (16%), Positives = 39/160 (24%), Gaps = 82/160 (51%)
Query: 119 SLDLAIDGADEVDPELNLVKGRGGALLREKMVEAASKSFVVVADESKLVSGLGGSKLAM- 177
+ + + +V RG ++ A V DE LG S M
Sbjct: 1776 VMSIE-SLVE-------VVFYRG------MTMQVA-----VPRDE------LGRSNYGMI 1810
Query: 178 ---PVEVVQFCWKFNLVRLQDLFRELG------CE-AKLREGENGKPYITDNFN-----Y 222
P V F+ LQ + +G E N+N Y
Sbjct: 1811 AINPGRVAA---SFSQEALQYVVERVGKRTGWLVEIV--------------NYNVENQQY 1853
Query: 223 IIDLYFETPIKDGVSAGTEIGKLEGVVEHGLFLDMATAVI 262
+ AG LD T V+
Sbjct: 1854 VA-------------AGDLRA-----------LDTVTNVL 1869
>2es4_D Lipase chaperone; protein-protein complex, steric chaperone,
triacylglycerol hydrolase, all alpha helix protein, A/B
hydrolase fold; 1.85A {Burkholderia glumae} SCOP:
a.137.15.1
Length = 332
Score = 30.9 bits (69), Expect = 0.38
Identities = 16/81 (19%), Positives = 29/81 (35%), Gaps = 1/81 (1%)
Query: 11 HHSTSAHFLPRAPKSLRPRAISIKAQAVPALTQDDLKKLAADKAVDYVKSGMALGLGTGS 70
HH +S H R + A + PA AA+ A+ + + + L
Sbjct: 9 HHHSSGHIEGRHMPAAPSPAPAGAVAGGPAAGVPAAASGAAEAAMP-LPAALPGALAGSH 67
Query: 71 TAAFVVDRIGQLLKTGELRDI 91
+ G+L +T +R+
Sbjct: 68 APRLPLAAGGRLARTRAVREF 88
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 29.9 bits (66), Expect = 0.47
Identities = 9/31 (29%), Positives = 16/31 (51%), Gaps = 5/31 (16%)
Query: 241 EIGKLEGVVEHGLFL-DMATAVIIAGKTGVE 270
+ KL+ ++ L+ D A A+ I K +E
Sbjct: 21 ALKKLQASLK--LYADDSAPALAI--KATME 47
Score = 29.1 bits (64), Expect = 1.1
Identities = 7/15 (46%), Positives = 9/15 (60%), Gaps = 2/15 (13%)
Query: 22 APKSLRPRAISIKAQ 36
A S P A++IKA
Sbjct: 33 ADDS-AP-ALAIKAT 45
Score = 28.4 bits (62), Expect = 1.5
Identities = 10/29 (34%), Positives = 13/29 (44%), Gaps = 6/29 (20%)
Query: 36 QAVPALTQDDLKKLAADKAVDYVKSGMAL 64
QA+ L Q LK A D A +A+
Sbjct: 20 QALKKL-QASLKLYADDSA-----PALAI 42
>1ae9_A Lambda integrase; DNA recombination, site-specific recombination;
1.90A {Enterobacteria phage lambda} SCOP: d.163.1.1
Length = 179
Score = 29.3 bits (66), Expect = 0.94
Identities = 29/134 (21%), Positives = 52/134 (38%), Gaps = 23/134 (17%)
Query: 41 LTQDDLKKL--AADKAVDYVKSGMALGLGTGSTAAFVVDRIGQLLKTGELR--DIVG--- 93
LT D+ K+ AA+ + +++ M L + TG R+G L + ++ DIV
Sbjct: 4 LTADEYLKIYQAAESSPCWLRLAMELAVVTGQ-------RVGDLCE---MKWSDIVDGYL 53
Query: 94 -IPTSKRTEEQAKSLNIPLTTLDDHPSLDLAIDGADEVDPELNLVKGRGGALLREKMVEA 152
+ SK + A + + L S+ +D E+ ++ L V
Sbjct: 54 YVEQSKTGVKIAIPTALHIDAL--GISMKETLDKCKEILGGETIIASTRREPLSSGTV-- 109
Query: 153 ASKSFVVVADESKL 166
S+ F+ S L
Sbjct: 110 -SRYFMRARKASGL 122
>2l42_A DNA-binding protein RAP1; BRCT domain, protein binding; NMR
{Saccharomyces cerevisiae}
Length = 106
Score = 27.4 bits (60), Expect = 2.0
Identities = 11/37 (29%), Positives = 19/37 (51%)
Query: 123 AIDGADEVDPELNLVKGRGGALLREKMVEAASKSFVV 159
A D +++D L++ GG +L K E+ F+V
Sbjct: 25 AHDSLNDIDQLARLIRANGGEVLDSKPRESKENVFIV 61
>3t4n_A Carbon catabolite-derepressing protein kinase; CBS domain,
nucleotide binding, cytosol, protein binding; HET: ADP;
2.30A {Saccharomyces cerevisiae} PDB: 3tdh_A* 3te5_A*
2qlv_A
Length = 179
Score = 28.2 bits (62), Expect = 2.1
Identities = 10/52 (19%), Positives = 19/52 (36%), Gaps = 3/52 (5%)
Query: 215 YITDNFNYIIDLYF---ETPIKDGVSAGTEIGKLEGVVEHGLFLDMATAVII 263
+ + NY++D F E+ D + FL + T +I+
Sbjct: 119 FQIETNNYLVDFKFDGWESSYGDDTTVSNISEDEMSTFSAYPFLHLTTKLIM 170
>3eh7_A 4-hydroxybutyrate COA-transferase; citrate lyase, structural
genomics, PSI-2, protein structure initiative; HET:
MSE; 2.05A {Porphyromonas gingivalis}
Length = 434
Score = 28.9 bits (65), Expect = 2.1
Identities = 6/32 (18%), Positives = 16/32 (50%)
Query: 47 KKLAADKAVDYVKSGMALGLGTGSTAAFVVDR 78
+ ++A++AV ++K+G + L +
Sbjct: 14 RIVSAEEAVKHIKNGERVALSHAAGVPQSCVD 45
>1bfg_A Basic fibroblast growth factor; 1.60A {Homo sapiens} SCOP: b.42.1.1
PDB: 1iil_A 1ii4_A 1bas_A 1bla_A 1bld_A 1bfb_A* 1bfc_A*
4fgf_A 1fga_A 2fgf_A 1ev2_A 1cvs_A 1fq9_A* 1bff_A 2bfh_A
Length = 146
Score = 27.4 bits (60), Expect = 3.8
Identities = 6/17 (35%), Positives = 8/17 (47%)
Query: 9 TLHHSTSAHFLPRAPKS 25
T + FLP + KS
Sbjct: 130 TGPGQKAILFLPMSAKS 146
>3kv1_A Transcriptional repressor; alpha-beta structure, structural
genomics, PSI-2, protein ST initiative, midwest center
for structural genomics, MCSG; HET: MSE; 1.70A {Vibrio
fischeri}
Length = 267
Score = 27.9 bits (62), Expect = 3.8
Identities = 13/54 (24%), Positives = 23/54 (42%)
Query: 29 RAISIKAQAVPALTQDDLKKLAADKAVDYVKSGMALGLGTGSTAAFVVDRIGQL 82
RA+ Q + + L + + ++ GMA+ +G G A V D G +
Sbjct: 24 RALISLDQPNTNEQRKQVAALVSSYLNNNLQEGMAVAVGQGQNVAAVADHAGIV 77
>3qli_A Coenzyme A transferase; COEN transferase; 1.90A {Yersinia pestis}
PDB: 3qlk_A 3s8d_A
Length = 455
Score = 27.8 bits (62), Expect = 3.9
Identities = 9/46 (19%), Positives = 20/46 (43%), Gaps = 1/46 (2%)
Query: 47 KKLAADKAVDYVKSGMALGLGTGSTAAFVVDR-IGQLLKTGELRDI 91
K ++AV + SG L +G + + + + G++ D+
Sbjct: 25 KLTTPEEAVSSIASGSHLSMGMFAAEPPALLKALADRATRGDIGDL 70
>3hj9_A Oxidoreductase; structural genomics, joint center for structural
genomics, J protein structure initiative, PSI-2; HET:
MSE FMN; 2.00A {Ralstonia eutropha}
Length = 223
Score = 27.6 bits (61), Expect = 4.1
Identities = 9/47 (19%), Positives = 16/47 (34%), Gaps = 5/47 (10%)
Query: 63 ALGLGTGSTAAFVVDRIGQLLKTGELRDI-----VGIPTSKRTEEQA 104
+ GLG ++ + + E + +G S T QA
Sbjct: 177 SAGLGAVVRGWLNRRQLAEHMSLNEDEEPILSQTIGRAASHVTTTQA 223
>2p39_A Fibroblast growth factor 23; atypical beta-trefoil fold, signaling
protein; HET: SCR; 1.50A {Homo sapiens}
Length = 155
Score = 27.3 bits (60), Expect = 4.1
Identities = 5/19 (26%), Positives = 7/19 (36%)
Query: 6 FLPTLHHSTSAHFLPRAPK 24
FL + HF P+
Sbjct: 133 FLSRRNEIPLIHFNTPIPR 151
>2gnp_A Transcriptional regulator; structural genomics, MCSG, APC84799,
streptococcus pneumonia PSI, protein structure
initiative; 1.65A {Streptococcus pneumoniae} SCOP:
c.124.1.8
Length = 266
Score = 27.5 bits (61), Expect = 4.2
Identities = 9/43 (20%), Positives = 20/43 (46%)
Query: 39 PALTQDDLKKLAADKAVDYVKSGMALGLGTGSTAAFVVDRIGQ 81
P + + + ++AA + + M +G G + + +VD I
Sbjct: 36 PTILSERISQVAAGVLRNLIDDNMKIGFSWGKSLSNLVDLIHS 78
>2ri0_A Glucosamine-6-phosphate deaminase; carbohydrate metabolism,; HET:
BTB; 1.60A {Streptococcus mutans} PDB: 2ri1_A*
Length = 234
Score = 27.2 bits (61), Expect = 5.9
Identities = 10/31 (32%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
Query: 42 TQDDLKKLAADKAVDYVKSGMA-LGLGTGST 71
+ + K+A + + G LGL TGST
Sbjct: 9 NKTEGSKVAFRMLEEEITFGAKTLGLATGST 39
>2qrd_A SNF1-like protein kinase SSP2; AMPK, ADP, ATP-binding, kinase,
nucleotide-binding, serine/T protein kinase,
transferase, CBS domain; HET: ADP ATP; 2.41A
{Schizosaccharomyces pombe} SCOP: d.129.6.2 PDB: 2ooy_A*
2qr1_A* 2qrc_A* 2oox_A* 2qre_A*
Length = 137
Score = 26.6 bits (58), Expect = 6.0
Identities = 6/50 (12%), Positives = 16/50 (32%), Gaps = 1/50 (2%)
Query: 215 YITDNFNYIIDLYFET-PIKDGVSAGTEIGKLEGVVEHGLFLDMATAVII 263
Y +++D+ T ++ + FLD+ ++
Sbjct: 83 YEVMPGCFMLDVKSNGYKDIYSHPERTADHGMDDLKSSFPFLDLCAMLVC 132
>3aa0_B F-actin-capping protein subunit beta isoforms 1 A; actin capping
protein, barbed END regulation, carmil family
conformational change; 1.70A {Gallus gallus} PDB:
3aa1_B* 3aa6_B 3aa7_B* 2kxp_B 3lk2_B
Length = 244
Score = 27.2 bits (60), Expect = 6.5
Identities = 22/75 (29%), Positives = 31/75 (41%), Gaps = 18/75 (24%)
Query: 189 NLVRLQDLFRELGCEAKL----------REGENGKPYITDNFNYIIDLY-------FETP 231
NL L DL L CE L R+ GK Y+ ++N D Y ++ P
Sbjct: 24 NLSDLIDLVPSL-CEDLLSSVDQPLKIARDKVVGKDYLLCDYNRDGDSYRSPWSNKYDPP 82
Query: 232 IKDGVSAGTEIGKLE 246
++DG + KLE
Sbjct: 83 LEDGAMPSARLRKLE 97
>2ddm_A Pyridoxine kinase; pyridoxal kinase, ribokinase, pyridoxal
5'-phosphate, vitamin B6, phosphorylation, transferase;
2.10A {Escherichia coli} PDB: 2ddo_A* 2ddw_A*
Length = 283
Score = 26.9 bits (60), Expect = 6.6
Identities = 8/39 (20%), Positives = 17/39 (43%), Gaps = 3/39 (7%)
Query: 44 DDLKKLAADKAVDYVKSGMALGLGTGSTAAFVVDRIGQL 82
L++ A + + V +G +GT S + + + L
Sbjct: 78 RALQERDALRQLRAVTTGY---MGTASQIKILAEWLTAL 113
>3lk4_B F-actin-capping protein subunit beta isoforms 1 and 2; CAPZ, CD2AP,
actin filaments, uncapping, actin-filament regulators,
protein-protein comple, actin capping, actin- binding;
1.99A {Gallus gallus} PDB: 2kz7_B 3aaa_B 3aae_B 3lk3_B
1izn_B
Length = 277
Score = 26.8 bits (59), Expect = 7.6
Identities = 22/75 (29%), Positives = 31/75 (41%), Gaps = 18/75 (24%)
Query: 189 NLVRLQDLFRELGCEAKL----------REGENGKPYITDNFNYIIDLY-------FETP 231
NL L DL L CE L R+ GK Y+ ++N D Y ++ P
Sbjct: 24 NLSDLIDLVPSL-CEDLLSSVDQPLKIARDKVVGKDYLLCDYNRDGDSYRSPWSNKYDPP 82
Query: 232 IKDGVSAGTEIGKLE 246
++DG + KLE
Sbjct: 83 LEDGAMPSARLRKLE 97
>2nvv_A Acetyl-COA hydrolase/transferase family protein; alpha beta
protein, structural genomics, PSI-2, protein STRU
initiative; 2.70A {Porphyromonas gingivalis}
Length = 506
Score = 27.1 bits (60), Expect = 7.8
Identities = 7/27 (25%), Positives = 14/27 (51%), Gaps = 1/27 (3%)
Query: 47 KKLAADKAVDYVKSGMALGLGTGSTAA 73
+ + A++A ++V +G G T A
Sbjct: 4 RFITAEEAAEFVHHNDNVGFS-GFTPA 29
>2g39_A Acetyl-COA hydrolase; coenzyme A transferase, structural G PSI,
protein structure initiative, midwest center for struc
genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP:
c.124.1.2 c.124.1.2
Length = 497
Score = 26.7 bits (59), Expect = 8.8
Identities = 10/27 (37%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Query: 47 KKLAADKAVDYVKSGMALGLGTGSTAA 73
K ++A +A D ++ GM +G+ G T A
Sbjct: 14 KVMSAAEAADLIQDGMTVGMS-GFTRA 39
>2okg_A Central glycolytic gene regulator; alpha/beta/alpha sandwich,
rossmann-like fold, structural genomics, PSI-2, protein
structure initiative; HET: MSE G3H; 1.65A {Bacillus
subtilis} SCOP: c.124.1.8 PDB: 3bxe_A* 3bxf_A* 3bxg_A*
3bxh_A*
Length = 255
Score = 26.7 bits (59), Expect = 9.2
Identities = 4/41 (9%), Positives = 13/41 (31%)
Query: 39 PALTQDDLKKLAADKAVDYVKSGMALGLGTGSTAAFVVDRI 79
+ ++ + A + + G+T V + +
Sbjct: 35 SPWVKKEMGRAAVACMKKRFSGKNIVAVTGGTTIEAVAEMM 75
>2xdq_A Light-independent protochlorophyllide reductase S; oxidoreductase,
DPOR, (bacterio)chlorophyll biosynthesis,
photosynthesis; 2.40A {Thermosynechococcus elongatus}
Length = 460
Score = 26.7 bits (58), Expect = 10.0
Identities = 20/125 (16%), Positives = 34/125 (27%), Gaps = 9/125 (7%)
Query: 27 RPRAISIKAQAVPALTQDDLKKLAADK---------AVDYVKSGMALGLGTGSTAAFVVD 77
P I + + DL+ LA A G + A +
Sbjct: 97 NPSVIVWIGTCTTEIIKMDLEGLAPKLEAEIGIPIVVARANGLDYAFTQGEDTVLAAMAA 156
Query: 78 RIGQLLKTGELRDIVGIPTSKRTEEQAKSLNIPLTTLDDHPSLDLAIDGADEVDPELNLV 137
R + + I ++ + + + HP L L D V +L L
Sbjct: 157 RCPTSTAISDPEERNPIQRLLNFGKKKEEVQAQSSQYHPHPPLVLFGSLPDPVVTQLTLE 216
Query: 138 KGRGG 142
+ G
Sbjct: 217 LKKQG 221
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.135 0.379
Gapped
Lambda K H
0.267 0.0778 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,251,088
Number of extensions: 272695
Number of successful extensions: 835
Number of sequences better than 10.0: 1
Number of HSP's gapped: 776
Number of HSP's successfully gapped: 58
Length of query: 274
Length of database: 6,701,793
Length adjustment: 92
Effective length of query: 182
Effective length of database: 4,133,061
Effective search space: 752217102
Effective search space used: 752217102
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 56 (25.3 bits)