BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 024005
(274 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2ECT|A Chain A, Solution Structure Of The Zinc Finger, C3hc4 Type (Ring
Finger) Domain Of Ring Finger Protein 126
Length = 78
Score = 59.3 bits (142), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 29/58 (50%), Positives = 35/58 (60%), Gaps = 4/58 (6%)
Query: 200 SVGNLKTEDE----LTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQQGTCPVCK 253
S G+ TE+ L C VC E +GE VR LPC H FH +CI PWL Q +CPVC+
Sbjct: 2 SSGSSGTEEHVGSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQHDSCPVCR 59
>pdb|2KIZ|A Chain A, Solution Structure Of Arkadia Ring-H2 Finger Domain
Length = 69
Score = 57.0 bits (136), Expect = 1e-08, Method: Composition-based stats.
Identities = 21/43 (48%), Positives = 28/43 (65%)
Query: 212 CTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQQGTCPVCKL 254
CT+CL + GE VR LPC+H FH C+D WL CP+C++
Sbjct: 17 CTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITNKKCPICRV 59
>pdb|2L0B|A Chain A, Solution Nmr Structure Of Zinc Finger Domain Of E3
Ubiquitin-Protein Ligase Praja-1 From Homo Sapiens,
Northeast Structural Genomics Consortium (Nesg) Target
Hr4710b
Length = 91
Score = 55.8 bits (133), Expect = 3e-08, Method: Composition-based stats.
Identities = 25/71 (35%), Positives = 39/71 (54%), Gaps = 8/71 (11%)
Query: 189 PAEQKKLETSISVGNLKTED------ELTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPW 242
PA ++ ++ + L TED E+ C +C + G++ LPC H FH C+ W
Sbjct: 16 PASKESIDALPEI--LVTEDHGAVGQEMCCPICCSEYVKGDVATELPCHHYFHKPCVSIW 73
Query: 243 LRQQGTCPVCK 253
L++ GTCPVC+
Sbjct: 74 LQKSGTCPVCR 84
>pdb|1X4J|A Chain A, Solution Structure Of Ring Finger In Ring Finger Protein
38
Length = 75
Score = 55.5 bits (132), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 33/55 (60%)
Query: 203 NLKTEDELTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQQGTCPVCKLRAG 257
N ++ C VC+ +++R LPC H+FHA C+D WL+ TCP+C+ +G
Sbjct: 17 NNHQSEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKANRTCPICRADSG 71
>pdb|1IYM|A Chain A, Ring-H2 Finger Domain Of El5
Length = 55
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 24/49 (48%), Positives = 31/49 (63%), Gaps = 1/49 (2%)
Query: 207 EDELTCTVCLEQVNVGEIVRSLP-CLHQFHANCIDPWLRQQGTCPVCKL 254
+D + C VCL ++ GE R LP C H FHA C+D WL TCP+C+L
Sbjct: 3 DDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRL 51
>pdb|1CHC|A Chain A, Structure Of The C3hc4 Domain By 1h-Nuclear Magnetic
Resonance Spectroscopy; A New Structural Class Of Zinc-
Finger
Length = 68
Score = 45.4 bits (106), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 33/61 (54%), Gaps = 5/61 (8%)
Query: 212 CTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQQGTCPVCKLRAGSGWHETRQVEMDAS 271
C +CLE + +LPCLH F CI W+RQ TCP+CK+ S H +E D+
Sbjct: 8 CPICLE--DPSNYSMALPCLHAFCYVCITRWIRQNPTCPLCKVPVESVVH---TIESDSE 62
Query: 272 Y 272
+
Sbjct: 63 F 63
>pdb|2ECN|A Chain A, Solution Structure Of The Ring Domain Of The Human Ring
Finger Protein 141
Length = 70
Score = 44.7 bits (104), Expect = 5e-05, Method: Composition-based stats.
Identities = 22/60 (36%), Positives = 31/60 (51%), Gaps = 5/60 (8%)
Query: 197 TSISVGNLKT-EDELTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQQGTCPVCKLR 255
+S S G +K DE C +C++ G LPC H F CID W + CP+C+L+
Sbjct: 2 SSGSSGRVKQLTDEEECCICMD----GRADLILPCAHSFCQKCIDKWSDRHRNCPICRLQ 57
>pdb|2EP4|A Chain A, Solution Structure Of Ring Finger From Human Ring Finger
Protein 24
Length = 74
Score = 42.7 bits (99), Expect = 2e-04, Method: Composition-based stats.
Identities = 16/43 (37%), Positives = 22/43 (51%)
Query: 212 CTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQQGTCPVCKL 254
C VCLE + + PC H FH C+ WL + CP+C +
Sbjct: 18 CAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVRKVCPLCNM 60
>pdb|4AYC|B Chain B, Rnf8 Ring Domain Structure
Length = 138
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 35/62 (56%), Gaps = 3/62 (4%)
Query: 192 QKKLETSISVGNLKTEDELTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQQGTCPV 251
Q + E +S N E+EL C +C E E V +L C H F + CI+ W++++ CP+
Sbjct: 36 QAQKEEVLSHMNDVLENELQCIICSEYF--IEAV-TLNCAHSFCSYCINEWMKRKIECPI 92
Query: 252 CK 253
C+
Sbjct: 93 CR 94
>pdb|4EPO|C Chain C, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|G Chain G, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|H Chain H, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|K Chain K, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|L Chain L, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
Length = 149
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 35/62 (56%), Gaps = 3/62 (4%)
Query: 192 QKKLETSISVGNLKTEDELTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQQGTCPV 251
Q + E +S N E+EL C +C E E V +L C H F + CI+ W++++ CP+
Sbjct: 47 QAQKEEVLSHMNDVLENELQCIICSEYF--IEAV-TLNCAHSFCSYCINEWMKRKIECPI 103
Query: 252 CK 253
C+
Sbjct: 104 CR 105
>pdb|4AYC|A Chain A, Rnf8 Ring Domain Structure
Length = 138
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 35/62 (56%), Gaps = 3/62 (4%)
Query: 192 QKKLETSISVGNLKTEDELTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQQGTCPV 251
Q + E +S N E+EL C +C E E V +L C H F + CI+ W++++ CP+
Sbjct: 36 QAQKEEVLSHMNDVLENELQCIICSEYF--IEAV-TLNCAHSFCSYCINEWMKRKIECPI 92
Query: 252 CK 253
C+
Sbjct: 93 CR 94
>pdb|2ECM|A Chain A, Solution Structure Of The Ring Domain Of The Ring Finger
And Chy Zinc Finger Domain-Containing Protein 1 From Mus
Musculus
Length = 55
Score = 38.5 bits (88), Expect = 0.004, Method: Composition-based stats.
Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Query: 212 CTVCLEQVNVGEIV-RSLPCLHQFHANCIDPWLRQQGTCPVC 252
C +CLE ++ +V LPC H H C + L++ CP+C
Sbjct: 8 CPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYRCPLC 49
>pdb|3NG2|A Chain A, Crystal Structure Of The Rnf4 Ring Domain Dimer
pdb|3NG2|B Chain B, Crystal Structure Of The Rnf4 Ring Domain Dimer
Length = 71
Score = 36.6 bits (83), Expect = 0.014, Method: Composition-based stats.
Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 4/54 (7%)
Query: 204 LKTEDELTCTVCL----EQVNVGEIVRSLPCLHQFHANCIDPWLRQQGTCPVCK 253
L+ ++C +C+ E V G ++ S C H F + C+ L+ TCP C+
Sbjct: 5 LRPSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCR 58
>pdb|2EA6|A Chain A, Solution Structure Of The Ring Domain Of The Human Ring
Finger Protein 4
Length = 69
Score = 36.2 bits (82), Expect = 0.019, Method: Composition-based stats.
Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 4/54 (7%)
Query: 204 LKTEDELTCTVCL----EQVNVGEIVRSLPCLHQFHANCIDPWLRQQGTCPVCK 253
L+ ++C +C+ E V G ++ S C H F + C+ L+ TCP C+
Sbjct: 10 LRPSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCR 63
>pdb|2XEU|A Chain A, Ring Domain
Length = 64
Score = 35.8 bits (81), Expect = 0.027, Method: Composition-based stats.
Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 4/48 (8%)
Query: 210 LTCTVCL----EQVNVGEIVRSLPCLHQFHANCIDPWLRQQGTCPVCK 253
++C +C+ E V G ++ S C H F + C+ L+ TCP C+
Sbjct: 4 VSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCR 51
>pdb|2JRJ|A Chain A, Solution Structure Of The Human Pirh2 Ring-H2 Domain.
Northeast Structural Genomics Consortium Target Ht2b
Length = 52
Score = 34.3 bits (77), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Query: 211 TCTVCLEQVNVGEIV-RSLPCLHQFHANCIDPWLRQQGTCPVC 252
C +CLE ++ +V LPC H H C + L++ CP+C
Sbjct: 7 NCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYRCPLC 49
>pdb|2ECL|A Chain A, Solution Structure Of The Ring Domain Of The Human
Ring-Box Protein 2
Length = 81
Score = 34.3 bits (77), Expect = 0.083, Method: Composition-based stats.
Identities = 10/24 (41%), Positives = 15/24 (62%)
Query: 230 CLHQFHANCIDPWLRQQGTCPVCK 253
C H FH C+ W++Q CP+C+
Sbjct: 48 CNHSFHNCCMSLWVKQNNRCPLCQ 71
>pdb|2Y43|A Chain A, Rad18 Ubiquitin Ligase Ring Domain Structure
pdb|2Y43|B Chain B, Rad18 Ubiquitin Ligase Ring Domain Structure
Length = 99
Score = 33.1 bits (74), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
Query: 207 EDELTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQQGTCPVC 252
+D L C +C E N+ I+ C H + + CI +L + CP C
Sbjct: 20 DDLLRCGICFEYFNIAMIIPQ--CSHNYCSLCIRKFLSYKTQCPTC 63
>pdb|2CKL|B Chain B, Ring1b-Bmi1 E3 Catalytic Domain Structure
Length = 165
Score = 32.3 bits (72), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 3/48 (6%)
Query: 209 ELTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQ-QGTCPVCKLR 255
EL C +CL+ + + + CLH+F A+CI LR CP C+ +
Sbjct: 54 ELMCPICLDMLK--NTMTTKECLHRFCADCIITALRSGNKECPTCRKK 99
>pdb|3RPG|C Chain C, Bmi1RING1B-Ubch5c Complex Structure
Length = 121
Score = 32.0 bits (71), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 3/48 (6%)
Query: 209 ELTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQ-QGTCPVCKLR 255
EL C +CL+ + + CLH+F A+CI LR CP C+ +
Sbjct: 53 ELMCPICLDMLKNTMTTKE--CLHRFCADCIITALRSGNKECPTCRKK 98
>pdb|1LDJ|B Chain B, Structure Of The Cul1-rbx1-skp1-f Boxskp2 Scf Ubiquitin
Ligase Complex
pdb|1LDK|C Chain C, Structure Of The Cul1-Rbx1-Skp1-F Boxskp2 Scf Ubiquitin
Ligase Complex
Length = 90
Score = 32.0 bits (71), Expect = 0.40, Method: Composition-based stats.
Identities = 10/22 (45%), Positives = 14/22 (63%)
Query: 230 CLHQFHANCIDPWLRQQGTCPV 251
C H FH +CI WL+ + CP+
Sbjct: 57 CNHAFHFHCISRWLKTRQVCPL 78
>pdb|2H0D|B Chain B, Structure Of A Bmi-1-Ring1b Polycomb Group Ubiquitin
Ligase Complex
Length = 100
Score = 32.0 bits (71), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 31/60 (51%), Gaps = 5/60 (8%)
Query: 195 LETSISVGNLKTEDELTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQ-QGTCPVCK 253
LE +S +L +E L C +CL+ + + CLH+F A+CI LR CP C+
Sbjct: 22 LEIVVSPRSLHSE--LMCPICLDMLKNTMTTKE--CLHRFCADCIITALRSGNKECPTCR 77
>pdb|2L5U|A Chain A, Structure Of The First Phd Finger (Phd1) From Chd4 (Mi2b)
Length = 61
Score = 31.2 bits (69), Expect = 0.62, Method: Composition-based stats.
Identities = 16/57 (28%), Positives = 30/57 (52%), Gaps = 7/57 (12%)
Query: 201 VGNLKTEDELTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQ----QGTCPVCK 253
+G+ +T+ + C VC + GEI+ C +H C+DP + + + +CP C+
Sbjct: 3 LGSYETDHQDYCEVCQQG---GEIILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCE 56
>pdb|4AP4|A Chain A, Rnf4 - Ubch5a - Ubiquitin Heterotrimeric Complex
Length = 133
Score = 31.2 bits (69), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 4/50 (8%)
Query: 210 LTCTVCL----EQVNVGEIVRSLPCLHQFHANCIDPWLRQQGTCPVCKLR 255
++C +C+ E V G ++ S C H F + C+ L+ TCP C+ +
Sbjct: 8 VSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKK 57
Score = 31.2 bits (69), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 4/50 (8%)
Query: 210 LTCTVCL----EQVNVGEIVRSLPCLHQFHANCIDPWLRQQGTCPVCKLR 255
++C +C+ E V G ++ S C H F + C+ L+ TCP C+ +
Sbjct: 73 VSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKK 122
>pdb|2H0D|A Chain A, Structure Of A Bmi-1-Ring1b Polycomb Group Ubiquitin
Ligase Complex
Length = 97
Score = 29.6 bits (65), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 19/37 (51%), Gaps = 4/37 (10%)
Query: 228 LPCLHQFHANCIDPWLRQQGTCPVCKLRAGSGWHETR 264
+ CLH F CI +L CP+C ++ H+TR
Sbjct: 28 IECLHSFCKTCIVRYLETSKYCPICDVQV----HKTR 60
>pdb|3RPG|B Chain B, Bmi1RING1B-Ubch5c Complex Structure
Length = 117
Score = 29.6 bits (65), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 19/37 (51%), Gaps = 4/37 (10%)
Query: 228 LPCLHQFHANCIDPWLRQQGTCPVCKLRAGSGWHETR 264
+ CLH F CI +L CP+C ++ H+TR
Sbjct: 32 IECLHSFCKTCIVRYLETSKYCPICDVQV----HKTR 64
>pdb|2CKL|A Chain A, Ring1b-Bmi1 E3 Catalytic Domain Structure
Length = 108
Score = 29.6 bits (65), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 19/37 (51%), Gaps = 4/37 (10%)
Query: 228 LPCLHQFHANCIDPWLRQQGTCPVCKLRAGSGWHETR 264
+ CLH F CI +L CP+C ++ H+TR
Sbjct: 32 IECLHSFCKTCIVRYLETSKYCPICDVQV----HKTR 64
>pdb|1UAA|A Chain A, E. Coli Rep HelicaseDNA COMPLEX
pdb|1UAA|B Chain B, E. Coli Rep HelicaseDNA COMPLEX
Length = 673
Score = 29.3 bits (64), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 18/30 (60%)
Query: 201 VGNLKTEDELTCTVCLEQVNVGEIVRSLPC 230
VG + + ELT T+C E+ GE+VR P
Sbjct: 598 VGITRAQKELTFTLCKERRQYGELVRPEPS 627
>pdb|1U6G|B Chain B, Crystal Structure Of The Cand1-Cul1-Roc1 Complex
pdb|2HYE|D Chain D, Crystal Structure Of The Ddb1-cul4a-rbx1-sv5v Complex
Length = 108
Score = 28.9 bits (63), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 10/22 (45%), Positives = 14/22 (63%)
Query: 230 CLHQFHANCIDPWLRQQGTCPV 251
C H FH +CI WL+ + CP+
Sbjct: 75 CNHAFHFHCISRWLKTRQVCPL 96
>pdb|4A0K|B Chain B, Structure Of Ddb1-Ddb2-Cul4a-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
Length = 117
Score = 28.9 bits (63), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 10/22 (45%), Positives = 14/22 (63%)
Query: 230 CLHQFHANCIDPWLRQQGTCPV 251
C H FH +CI WL+ + CP+
Sbjct: 84 CNHAFHFHCISRWLKTRQVCPL 105
>pdb|2ECW|A Chain A, Solution Structure Of The Zinc Finger, C3hc4 Type (Ring
Finger) Domain Tripartite Motif Protein 30
Length = 85
Score = 28.9 bits (63), Expect = 3.1, Method: Composition-based stats.
Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 9/54 (16%)
Query: 207 EDELTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQ------QGTCPVCKL 254
++E+TC +CLE + E V S C H F CI +G CPVC++
Sbjct: 17 KEEVTCPICLELLK--EPV-SADCNHSFCRACITLNYESNRNTDGKGNCPVCRV 67
>pdb|2LGV|A Chain A, Rbx1
Length = 100
Score = 28.9 bits (63), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 10/22 (45%), Positives = 14/22 (63%)
Query: 230 CLHQFHANCIDPWLRQQGTCPV 251
C H FH +CI WL+ + CP+
Sbjct: 67 CNHAFHFHCISRWLKTRQVCPL 88
>pdb|4A0C|D Chain D, Structure Of The Cand1-Cul4b-Rbx1 Complex
pdb|4A0C|F Chain F, Structure Of The Cand1-Cul4b-Rbx1 Complex
pdb|4A0L|F Chain F, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
pdb|4A0L|I Chain I, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
Length = 98
Score = 28.9 bits (63), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 10/22 (45%), Positives = 14/22 (63%)
Query: 230 CLHQFHANCIDPWLRQQGTCPV 251
C H FH +CI WL+ + CP+
Sbjct: 65 CNHAFHFHCISRWLKTRQVCPL 86
>pdb|3DPL|R Chain R, Structural Insights Into Nedd8 Activation Of Cullin-Ring
Ligases: Conformational Control Of Conjugation.
pdb|3RTR|B Chain B, A Ring E3-Substrate Complex Poised For Ubiquitin-Like
Protein Transfer: Structural Insights Into Cullin-Ring
Ligases
pdb|3RTR|D Chain D, A Ring E3-Substrate Complex Poised For Ubiquitin-Like
Protein Transfer: Structural Insights Into Cullin-Ring
Ligases
pdb|3RTR|F Chain F, A Ring E3-Substrate Complex Poised For Ubiquitin-Like
Protein Transfer: Structural Insights Into Cullin-Ring
Ligases
pdb|3RTR|H Chain H, A Ring E3-Substrate Complex Poised For Ubiquitin-Like
Protein Transfer: Structural Insights Into Cullin-Ring
Ligases
pdb|4F52|B Chain B, Structure Of A Glomulin-Rbx1-Cul1 Complex
pdb|4F52|D Chain D, Structure Of A Glomulin-Rbx1-Cul1 Complex
Length = 106
Score = 28.9 bits (63), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 10/22 (45%), Positives = 14/22 (63%)
Query: 230 CLHQFHANCIDPWLRQQGTCPV 251
C H FH +CI WL+ + CP+
Sbjct: 73 CNHAFHFHCISRWLKTRQVCPL 94
>pdb|2K4D|A Chain A, E2-C-Cbl Recognition Is Necessary But Not Sufficient For
Ubiquitination Activity
Length = 83
Score = 28.9 bits (63), Expect = 3.3, Method: Composition-based stats.
Identities = 13/43 (30%), Positives = 20/43 (46%), Gaps = 4/43 (9%)
Query: 212 CTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQQGT-CPVCK 253
C +C E + V+ PC H +C+ W +G CP C+
Sbjct: 27 CKICAEN---DKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCR 66
>pdb|3DQV|R Chain R, Structural Insights Into Nedd8 Activation Of Cullin-Ring
Ligases: Conformational Control Of Conjugation
pdb|3DQV|Y Chain Y, Structural Insights Into Nedd8 Activation Of Cullin-Ring
Ligases: Conformational Control Of Conjugation
Length = 106
Score = 28.9 bits (63), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 10/22 (45%), Positives = 14/22 (63%)
Query: 230 CLHQFHANCIDPWLRQQGTCPV 251
C H FH +CI WL+ + CP+
Sbjct: 73 CNHAFHFHCISRWLKTRQVCPL 94
>pdb|4A49|A Chain A, Structure Of Phosphotyr371-C-Cbl-Ubch5b Complex
Length = 84
Score = 28.5 bits (62), Expect = 4.1, Method: Composition-based stats.
Identities = 13/43 (30%), Positives = 20/43 (46%), Gaps = 4/43 (9%)
Query: 212 CTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQQGT-CPVCK 253
C +C E + V+ PC H +C+ W +G CP C+
Sbjct: 30 CKICAEN---DKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCR 69
>pdb|2LDR|A Chain A, Solution Structure Of Helix-Ring Domain Of Cbl-B In The
Tyr363 Phosphorylated Form
Length = 82
Score = 28.1 bits (61), Expect = 5.6, Method: Composition-based stats.
Identities = 13/43 (30%), Positives = 19/43 (44%), Gaps = 4/43 (9%)
Query: 212 CTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQQGT-CPVCK 253
C +C E + V+ PC H +C+ W G CP C+
Sbjct: 29 CKICAEN---DKDVKIEPCGHLMCTSCLTAWQESDGQGCPFCR 68
>pdb|4A4C|A Chain A, Structure Of Phosphotyr371-C-Cbl-Ubch5b-Zap-70 Complex
Length = 391
Score = 27.7 bits (60), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 13/43 (30%), Positives = 20/43 (46%), Gaps = 4/43 (9%)
Query: 212 CTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQQGT-CPVCK 253
C +C E + V+ PC H +C+ W +G CP C+
Sbjct: 337 CKICAEN---DKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCR 376
>pdb|2Y1M|A Chain A, Structure Of Native C-Cbl
pdb|2Y1M|B Chain B, Structure Of Native C-Cbl
pdb|2Y1M|C Chain C, Structure Of Native C-Cbl
pdb|2Y1M|D Chain D, Structure Of Native C-Cbl
pdb|2Y1M|E Chain E, Structure Of Native C-Cbl
pdb|2Y1M|F Chain F, Structure Of Native C-Cbl
pdb|2Y1N|A Chain A, Structure Of C-Cbl-Zap-70 Peptide Complex
pdb|2Y1N|C Chain C, Structure Of C-Cbl-Zap-70 Peptide Complex
Length = 389
Score = 27.7 bits (60), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 13/43 (30%), Positives = 20/43 (46%), Gaps = 4/43 (9%)
Query: 212 CTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQQGT-CPVCK 253
C +C E + V+ PC H +C+ W +G CP C+
Sbjct: 335 CKICAEN---DKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCR 374
>pdb|4A4B|A Chain A, Structure Of Modified Phosphotyr371-C-Cbl-Ubch5b-Zap-70
Complex
Length = 391
Score = 27.7 bits (60), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 13/43 (30%), Positives = 20/43 (46%), Gaps = 4/43 (9%)
Query: 212 CTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQQGT-CPVCK 253
C +C E + V+ PC H +C+ W +G CP C+
Sbjct: 337 CKICAEN---DKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCR 376
>pdb|1FBV|A Chain A, Structure Of A Cbl-Ubch7 Complex: Ring Domain Function In
Ubiquitin-Protein Ligases
Length = 388
Score = 27.7 bits (60), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 13/43 (30%), Positives = 20/43 (46%), Gaps = 4/43 (9%)
Query: 212 CTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQQGT-CPVCK 253
C +C E + V+ PC H +C+ W +G CP C+
Sbjct: 335 CKICAEN---DKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCR 374
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.135 0.410
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,188,548
Number of Sequences: 62578
Number of extensions: 189136
Number of successful extensions: 336
Number of sequences better than 100.0: 48
Number of HSP's better than 100.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 301
Number of HSP's gapped (non-prelim): 49
length of query: 274
length of database: 14,973,337
effective HSP length: 97
effective length of query: 177
effective length of database: 8,903,271
effective search space: 1575878967
effective search space used: 1575878967
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 51 (24.3 bits)