BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 024005
(274 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9M2S6|SDIR1_ARATH E3 ubiquitin-protein ligase SDIR1 OS=Arabidopsis thaliana GN=SDIR1
PE=1 SV=1
Length = 273
Score = 389 bits (999), Expect = e-107, Method: Compositional matrix adjust.
Identities = 197/276 (71%), Positives = 221/276 (80%), Gaps = 5/276 (1%)
Query: 1 MSFVFRGSRADLETGFPG-FIPERRTVRIHAGRPVNSNSLAFLVTVLLLFMILNSHQMSS 59
MSFVFRGSR DLE+GF G F+PERR +R+H RPVNSNSLAFLVTVLLLFMILNSHQM
Sbjct: 1 MSFVFRGSRGDLESGFSGGFLPERRAMRVHGARPVNSNSLAFLVTVLLLFMILNSHQMPP 60
Query: 60 NFLLWIVLGIFLLATSLRMYATC-QQLHAQAQAHAVASGLLGHTELRLQMPPAIAFASRG 118
NFLLW+VLG+FL+AT+LRMYATC Q A ASGL HTELRL +PP+IA A+RG
Sbjct: 61 NFLLWLVLGVFLMATTLRMYATCQQLQAHAQAQAAAASGLFSHTELRLHVPPSIALATRG 120
Query: 119 RLQGLRLQLALLDREFDELDYETLRALDADNVPTAASMSEEEINTLPVHKYKVSGSQSGA 178
RLQGLRLQLALLDREFD+LDYETLRALD+DNV T SMSEEEIN LPVHKYKV ++G
Sbjct: 121 RLQGLRLQLALLDREFDDLDYETLRALDSDNVST-TSMSEEEINALPVHKYKVLDPENGC 179
Query: 179 SSMQLGSSSSPAEQKKLETSISVGNLKTEDELTCTVCLEQVNVGEIVRSLPCLHQFHANC 238
S + S+SS AE K+ S + TEDELTC+VCLEQV VGEIVR+LPCLHQFHA C
Sbjct: 180 SLAKQASTSSSAE--KMLDSANESKKGTEDELTCSVCLEQVTVGEIVRTLPCLHQFHAGC 237
Query: 239 IDPWLRQQGTCPVCKLRAGSGWHETRQVEMDASYMV 274
IDPWLRQQGTCPVCK RA SGW E +++ DAS MV
Sbjct: 238 IDPWLRQQGTCPVCKFRAHSGWQEQDEIDDDASDMV 273
>sp|Q8VEM1|GOLI_MOUSE E3 ubiquitin-protein ligase RNF130 OS=Mus musculus GN=Rnf130 PE=2
SV=1
Length = 419
Score = 70.9 bits (172), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 45/74 (60%), Gaps = 1/74 (1%)
Query: 182 QLGSSSSPAEQKKLETSISVGNLKTEDELT-CTVCLEQVNVGEIVRSLPCLHQFHANCID 240
+LG ++ A K ++ G+ +T+ + C VC+E ++VR LPC H FH +C+D
Sbjct: 233 RLGDAAKKAISKLTTRTVKKGDKETDPDFDHCAVCIESYKQNDVVRVLPCKHVFHKSCVD 292
Query: 241 PWLRQQGTCPVCKL 254
PWL + TCP+CKL
Sbjct: 293 PWLSEHCTCPMCKL 306
>sp|Q6Y290|GOLI_RAT E3 ubiquitin-protein ligase RNF130 OS=Rattus norvegicus GN=Rnf130
PE=1 SV=1
Length = 419
Score = 70.9 bits (172), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 45/74 (60%), Gaps = 1/74 (1%)
Query: 182 QLGSSSSPAEQKKLETSISVGNLKTEDELT-CTVCLEQVNVGEIVRSLPCLHQFHANCID 240
+LG ++ A K ++ G+ +T+ + C VC+E ++VR LPC H FH +C+D
Sbjct: 233 RLGDAAKKAISKLTTRTVKKGDKETDPDFDHCAVCIESYKQNDVVRVLPCKHVFHKSCVD 292
Query: 241 PWLRQQGTCPVCKL 254
PWL + TCP+CKL
Sbjct: 293 PWLSEHCTCPMCKL 306
>sp|Q86XS8|GOLI_HUMAN E3 ubiquitin-protein ligase RNF130 OS=Homo sapiens GN=RNF130 PE=1
SV=1
Length = 419
Score = 70.5 bits (171), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 45/74 (60%), Gaps = 1/74 (1%)
Query: 182 QLGSSSSPAEQKKLETSISVGNLKTEDELT-CTVCLEQVNVGEIVRSLPCLHQFHANCID 240
+LG ++ A K ++ G+ +T+ + C VC+E ++VR LPC H FH +C+D
Sbjct: 233 RLGDAAKKAISKLTTRTVKKGDKETDPDFDHCAVCIESYKQNDVVRILPCKHVFHKSCVD 292
Query: 241 PWLRQQGTCPVCKL 254
PWL + TCP+CKL
Sbjct: 293 PWLSEHCTCPMCKL 306
>sp|Q8NC42|RN149_HUMAN E3 ubiquitin-protein ligase RNF149 OS=Homo sapiens GN=RNF149 PE=2
SV=2
Length = 400
Score = 69.3 bits (168), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 41/99 (41%), Positives = 51/99 (51%), Gaps = 10/99 (10%)
Query: 182 QLGSSSSPAEQKKLETSISVGNLK------TEDELTCTVCLEQVNVGEIVRSLPCLHQFH 235
Q+GS S E KK+ + + +K D C VC+E V +I+R LPC H FH
Sbjct: 233 QIGSQSHRKETKKVIGQLLLHTVKHGEKGIDVDAENCAVCIENFKVKDIIRILPCKHIFH 292
Query: 236 ANCIDPWLRQQGTCPVCKL---RAGSGWHETRQV-EMDA 270
CIDPWL TCP+CKL +A W E V EM A
Sbjct: 293 RICIDPWLLDHRTCPMCKLDVIKALGYWGEPGDVQEMPA 331
>sp|Q7T0Q3|R126A_XENLA RING finger protein 126-A OS=Xenopus laevis GN=rnf126-a PE=2 SV=1
Length = 312
Score = 68.6 bits (166), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 31/71 (43%), Positives = 40/71 (56%), Gaps = 2/71 (2%)
Query: 185 SSSSPAEQKKLET--SISVGNLKTEDELTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPW 242
+ PA+ +K++ +I + L C VC E VGE VR LPC H FH +CI PW
Sbjct: 199 TGPPPADNEKIQALPTIQITEEHVGSGLECPVCKEDYTVGECVRQLPCNHLFHNDCIIPW 258
Query: 243 LRQQGTCPVCK 253
L Q TCPVC+
Sbjct: 259 LEQHDTCPVCR 269
>sp|Q5DTZ6|RN150_MOUSE RING finger protein 150 OS=Mus musculus GN=Rnf150 PE=2 SV=2
Length = 437
Score = 68.6 bits (166), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 44/74 (59%), Gaps = 1/74 (1%)
Query: 182 QLGSSSSPAEQKKLETSISVGNLKTEDEL-TCTVCLEQVNVGEIVRSLPCLHQFHANCID 240
+LG ++ A K +I G+ +TE + C VC+E ++VR LPC H FH +C+D
Sbjct: 246 RLGDAAKKAISKLQVRTIRKGDKETESDFDNCAVCIEGYKPNDVVRILPCRHLFHKSCVD 305
Query: 241 PWLRQQGTCPVCKL 254
PWL TCP+CK+
Sbjct: 306 PWLLDHRTCPMCKM 319
>sp|Q9ULK6|RN150_HUMAN RING finger protein 150 OS=Homo sapiens GN=RNF150 PE=2 SV=2
Length = 438
Score = 68.6 bits (166), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 44/74 (59%), Gaps = 1/74 (1%)
Query: 182 QLGSSSSPAEQKKLETSISVGNLKTEDEL-TCTVCLEQVNVGEIVRSLPCLHQFHANCID 240
+LG ++ A K +I G+ +TE + C VC+E ++VR LPC H FH +C+D
Sbjct: 247 RLGDAAKKAISKLQIRTIKKGDKETESDFDNCAVCIEGYKPNDVVRILPCRHLFHKSCVD 306
Query: 241 PWLRQQGTCPVCKL 254
PWL TCP+CK+
Sbjct: 307 PWLLDHRTCPMCKM 320
>sp|Q6DIP3|RN126_XENTR RING finger protein 126 OS=Xenopus tropicalis GN=rnf126 PE=2 SV=1
Length = 311
Score = 67.8 bits (164), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 31/71 (43%), Positives = 40/71 (56%), Gaps = 2/71 (2%)
Query: 185 SSSSPAEQKKLET--SISVGNLKTEDELTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPW 242
+ PA+ +K++ +I + L C VC E VGE VR LPC H FH +CI PW
Sbjct: 198 TGPPPADTEKIQALPTIQITEEHVGSGLECPVCKEDYTVGESVRQLPCNHLFHNDCIIPW 257
Query: 243 LRQQGTCPVCK 253
L Q TCPVC+
Sbjct: 258 LEQHDTCPVCR 268
>sp|Q06003|GOLI_DROME Protein goliath OS=Drosophila melanogaster GN=gol PE=2 SV=3
Length = 461
Score = 67.4 bits (163), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 42/80 (52%), Gaps = 3/80 (3%)
Query: 178 ASSMQLGSSSSPAEQKKLETSISVGNLKTEDELT---CTVCLEQVNVGEIVRSLPCLHQF 234
A Q + S ++ ++ G E +L C +C+E + +R LPC H+F
Sbjct: 266 AKDQQSRNLCSVTKKAIMKIPTKTGKFSDEKDLDSDCCAICIEAYKPTDTIRILPCKHEF 325
Query: 235 HANCIDPWLRQQGTCPVCKL 254
H NCIDPWL + TCP+CKL
Sbjct: 326 HKNCIDPWLIEHRTCPMCKL 345
>sp|Q3U2C5|RN149_MOUSE E3 ubiquitin-protein ligase RNF149 OS=Mus musculus GN=Rnf149 PE=2
SV=3
Length = 394
Score = 67.0 bits (162), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 32/79 (40%), Positives = 42/79 (53%), Gaps = 6/79 (7%)
Query: 182 QLGSSSSPAEQKKLETSISVGNLK------TEDELTCTVCLEQVNVGEIVRSLPCLHQFH 235
Q GS + E KK+ + + +K D C VC+E V +++R LPC H FH
Sbjct: 229 QFGSQNHRKETKKVIGQLPLHTVKHGEKGIDVDAENCAVCIENFKVKDVIRILPCKHIFH 288
Query: 236 ANCIDPWLRQQGTCPVCKL 254
CIDPWL TCP+CKL
Sbjct: 289 RICIDPWLLDHRTCPMCKL 307
>sp|Q566M8|RN150_DANRE RING finger protein 150 OS=Danio rerio GN=rnf150 PE=2 SV=1
Length = 419
Score = 66.2 bits (160), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 182 QLGSSSSPAEQKKLETSISVGNLKTEDEL-TCTVCLEQVNVGEIVRSLPCLHQFHANCID 240
+LG ++ A + +I G+ +TE + C VC+E ++VR LPC H FH C+D
Sbjct: 236 RLGDAAKKAISQLQVRTIRKGDQETESDFDNCAVCIEGYKPNDVVRILPCRHLFHKCCVD 295
Query: 241 PWLRQQGTCPVCKL 254
PWL TCP+CK+
Sbjct: 296 PWLVDHRTCPMCKM 309
>sp|Q6IRP0|R126B_XENLA RING finger protein 126-B OS=Xenopus laevis GN=rnf126-b PE=2 SV=1
Length = 312
Score = 66.2 bits (160), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 31/71 (43%), Positives = 39/71 (54%), Gaps = 2/71 (2%)
Query: 185 SSSSPAEQKKLET--SISVGNLKTEDELTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPW 242
+ PA+ K++ +I + L C VC E VGE VR LPC H FH +CI PW
Sbjct: 199 TGPPPADTDKIQALPTIQITEEHVGFGLECPVCKEDYTVGESVRQLPCNHLFHNDCIIPW 258
Query: 243 LRQQGTCPVCK 253
L Q TCPVC+
Sbjct: 259 LEQHDTCPVCR 269
>sp|Q9D0C1|RN115_MOUSE E3 ubiquitin-protein ligase RNF115 OS=Mus musculus GN=Rnf115 PE=1
SV=1
Length = 305
Score = 66.2 bits (160), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 33/81 (40%), Positives = 49/81 (60%), Gaps = 3/81 (3%)
Query: 189 PAEQKKLET--SISVGNLKTEDELTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQQ 246
PA+++K+ + +++V + L C VC E V E VR LPC H FH++CI PWL
Sbjct: 204 PADKEKITSLPTVTVTQEQVNTGLECPVCKEDYTVEEKVRQLPCNHFFHSSCIVPWLELH 263
Query: 247 GTCPVCKLRAGSGWHETRQVE 267
TCPVC+ ++ +G TRQ +
Sbjct: 264 DTCPVCR-KSLNGEDSTRQTQ 283
>sp|Q6NRX0|RN149_XENLA E3 ubiquitin-protein ligase RNF149 OS=Xenopus laevis GN=rnf149 PE=2
SV=1
Length = 397
Score = 65.9 bits (159), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 32/79 (40%), Positives = 43/79 (54%), Gaps = 6/79 (7%)
Query: 182 QLGSSSSPAEQKKLETSISVGNLKTE------DELTCTVCLEQVNVGEIVRSLPCLHQFH 235
Q G+ S+ E KK + + + +K D C VC+E ++VR LPC H FH
Sbjct: 228 QCGNQSNRKETKKAISQLQLHRVKKGEKGIDIDAENCAVCIENYKTKDLVRILPCKHIFH 287
Query: 236 ANCIDPWLRQQGTCPVCKL 254
CIDPWL + TCP+CKL
Sbjct: 288 RLCIDPWLIEHRTCPMCKL 306
>sp|Q6AY01|RN133_RAT E3 ubiquitin-protein ligase RNF133 OS=Rattus norvegicus GN=Rnf133
PE=2 SV=1
Length = 381
Score = 65.1 bits (157), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 37/69 (53%), Gaps = 6/69 (8%)
Query: 191 EQKKLETSISVGNLKTEDEL------TCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLR 244
E KK + V LK DE +C +C E EIVR L C H FH NCIDPW+
Sbjct: 229 ELKKAFGQLQVRILKEGDEEVSPNADSCVICFEAYKPNEIVRILTCKHFFHKNCIDPWIL 288
Query: 245 QQGTCPVCK 253
GTCP+CK
Sbjct: 289 AHGTCPMCK 297
>sp|Q14B02|RN133_MOUSE E3 ubiquitin-protein ligase RNF133 OS=Mus musculus GN=Rnf133 PE=1
SV=1
Length = 382
Score = 65.1 bits (157), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 37/69 (53%), Gaps = 6/69 (8%)
Query: 191 EQKKLETSISVGNLKTEDEL------TCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLR 244
E KK + V LK DE +C +C E EIVR L C H FH NCIDPW+
Sbjct: 229 ELKKAFGQLQVRVLKEGDEEVNPNADSCVICFEAYKPNEIVRILTCKHFFHKNCIDPWIL 288
Query: 245 QQGTCPVCK 253
GTCP+CK
Sbjct: 289 AHGTCPMCK 297
>sp|Q9Y4L5|RN115_HUMAN E3 ubiquitin-protein ligase RNF115 OS=Homo sapiens GN=RNF115 PE=1
SV=2
Length = 304
Score = 64.7 bits (156), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 33/81 (40%), Positives = 50/81 (61%), Gaps = 3/81 (3%)
Query: 189 PAEQKKLET--SISVGNLKTEDELTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQQ 246
PA+++K+ + +++V + + L C VC E V E VR LPC H FH++CI PWL
Sbjct: 203 PADKEKITSLPTVTVTQEQVDMGLECPVCKEDYTVEEEVRQLPCNHFFHSSCIVPWLELH 262
Query: 247 GTCPVCKLRAGSGWHETRQVE 267
TCPVC+ ++ +G TRQ +
Sbjct: 263 DTCPVCR-KSLNGEDSTRQSQ 282
>sp|Q9C1X4|YKW3_SCHPO Uncharacterized RING finger protein P32A8.03c
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPAP32A8.03c PE=4 SV=1
Length = 513
Score = 64.7 bits (156), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 35/65 (53%)
Query: 207 EDELTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQQGTCPVCKLRAGSGWHETRQV 266
++E CT+C+E + + V LPC H FH NCI PWLR GTC +C+ +
Sbjct: 391 DEEGECTICMEMFKINDDVIQLPCKHYFHENCIKPWLRVNGTCAICRAPVDPNSQQRNNT 450
Query: 267 EMDAS 271
D++
Sbjct: 451 STDSA 455
>sp|Q91YL2|RN126_MOUSE RING finger protein 126 OS=Mus musculus GN=Rnf126 PE=1 SV=1
Length = 313
Score = 64.7 bits (156), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 41/71 (57%), Gaps = 2/71 (2%)
Query: 185 SSSSPAEQKKLET--SISVGNLKTEDELTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPW 242
+ PA+++K++ ++ V L C VC E +GE VR LPC H FH +CI PW
Sbjct: 202 TGPPPADKEKIQALPTVPVTEEHVGSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPW 261
Query: 243 LRQQGTCPVCK 253
L Q +CPVC+
Sbjct: 262 LEQHDSCPVCR 272
>sp|Q9FKX5|NIPL1_ARATH NEP1-interacting protein-like 1 OS=Arabidopsis thaliana GN=ATL27
PE=2 SV=1
Length = 221
Score = 64.3 bits (155), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 25/45 (55%), Positives = 33/45 (73%), Gaps = 1/45 (2%)
Query: 210 LTCTVCLEQVNVGEIVRSLP-CLHQFHANCIDPWLRQQGTCPVCK 253
++C+VCL+ VGE VRSLP C H FH CID WLR+ +CP+C+
Sbjct: 174 VSCSVCLQDFQVGETVRSLPHCHHMFHLPCIDKWLRRHASCPLCR 218
>sp|Q07G42|RNF12_XENTR E3 ubiquitin-protein ligase RNF12 OS=Xenopus tropicalis GN=rnf12
PE=2 SV=1
Length = 639
Score = 64.3 bits (155), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 36/57 (63%), Gaps = 1/57 (1%)
Query: 198 SISVGNLKTEDEL-TCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQQGTCPVCK 253
++S N D L TC+VC+ + G +R LPC H++H +CID WL + TCP+C+
Sbjct: 570 NLSTRNFGENDALKTCSVCITEYTEGNKLRKLPCSHEYHVHCIDRWLSENSTCPICR 626
>sp|Q95K04|RN133_MACFA E3 ubiquitin-protein ligase RNF133 OS=Macaca fascicularis GN=RNF133
PE=2 SV=1
Length = 376
Score = 63.9 bits (154), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 23/43 (53%), Positives = 28/43 (65%)
Query: 211 TCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQQGTCPVCK 253
+C +C E +IVR L C H FH NCIDPW+ GTCP+CK
Sbjct: 255 SCVICFEHYKPNDIVRILTCKHFFHKNCIDPWILSHGTCPICK 297
>sp|Q641J8|RF12A_XENLA E3 ubiquitin-protein ligase RNF12-A OS=Xenopus laevis GN=rnf12-a
PE=1 SV=1
Length = 622
Score = 63.9 bits (154), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 36/57 (63%), Gaps = 1/57 (1%)
Query: 198 SISVGNLKTEDEL-TCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQQGTCPVCK 253
++S N D L TC+VC+ + G +R LPC H++H +CID WL + TCP+C+
Sbjct: 553 NLSTRNFGENDALKTCSVCITEYTEGNKLRKLPCSHEYHIHCIDRWLSENSTCPICR 609
>sp|Q0II22|RN126_BOVIN RING finger protein 126 OS=Bos taurus GN=RNF126 PE=2 SV=1
Length = 313
Score = 63.9 bits (154), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 40/71 (56%), Gaps = 2/71 (2%)
Query: 185 SSSSPAEQKKLET--SISVGNLKTEDELTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPW 242
+ PA+++K++ ++ V L C VC + +GE VR LPC H FH CI PW
Sbjct: 203 TGPPPADKEKIQALPTVPVTEEHVGSGLECPVCKDDYGLGEHVRQLPCNHLFHDGCIVPW 262
Query: 243 LRQQGTCPVCK 253
L Q +CPVC+
Sbjct: 263 LEQHDSCPVCR 273
>sp|Q8LBA0|NIPL2_ARATH NEP1-interacting protein-like 2 OS=Arabidopsis thaliana GN=ATL24
PE=1 SV=2
Length = 223
Score = 63.9 bits (154), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 23/43 (53%), Positives = 31/43 (72%), Gaps = 1/43 (2%)
Query: 212 CTVCLEQVNVGEIVRSLP-CLHQFHANCIDPWLRQQGTCPVCK 253
CT+CL+ + GEI RSLP C H FH C+D WL + G+CP+C+
Sbjct: 176 CTICLQDIKTGEITRSLPKCDHTFHLVCVDKWLIRHGSCPICR 218
>sp|Q8WVZ7|RN133_HUMAN E3 ubiquitin-protein ligase RNF133 OS=Homo sapiens GN=RNF133 PE=2
SV=1
Length = 376
Score = 63.5 bits (153), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 23/43 (53%), Positives = 29/43 (67%)
Query: 211 TCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQQGTCPVCK 253
+C +C E+ +IVR L C H FH NCIDPW+ GTCP+CK
Sbjct: 255 SCVICFERYKPNDIVRILTCKHFFHKNCIDPWILPHGTCPICK 297
>sp|Q6ZSG1|RN165_HUMAN RING finger protein 165 OS=Homo sapiens GN=RNF165 PE=1 SV=1
Length = 346
Score = 63.5 bits (153), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 40/118 (33%), Positives = 50/118 (42%), Gaps = 22/118 (18%)
Query: 139 YETLRALDA--DNVPTAASMSEEEINTLPVHKYKVSGSQSGASSMQLGSSSSPAEQKKLE 196
YE L L+ NV A + E T P HKYK Q G G S E+
Sbjct: 239 YEELLQLEDRLGNVTRGAVQNTIERFTFP-HKYKKRRPQDGKGKKDEGEESDTDEK---- 293
Query: 197 TSISVGNLKTEDELTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQQGTCPVCKL 254
CT+CL + GE VR LPC+H FH C+D WL CP+C++
Sbjct: 294 ---------------CTICLSMLEDGEDVRRLPCMHLFHQLCVDQWLAMSKKCPICRV 336
>sp|Q9NVW2|RNF12_HUMAN E3 ubiquitin-protein ligase RLIM OS=Homo sapiens GN=RLIM PE=1 SV=3
Length = 624
Score = 63.5 bits (153), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 30/43 (69%)
Query: 211 TCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQQGTCPVCK 253
TC+VC+ + G +R LPC H++H +CID WL + TCP+C+
Sbjct: 569 TCSVCITEYTEGNKLRKLPCSHEYHVHCIDRWLSENSTCPICR 611
>sp|Q9WTV7|RNF12_MOUSE E3 ubiquitin-protein ligase RLIM OS=Mus musculus GN=Rlim PE=1 SV=2
Length = 600
Score = 63.5 bits (153), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 30/43 (69%)
Query: 211 TCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQQGTCPVCK 253
TC+VC+ + G +R LPC H++H +CID WL + TCP+C+
Sbjct: 545 TCSVCITEYTEGNKLRKLPCSHEYHVHCIDRWLSENSTCPICR 587
>sp|E9QAU8|RN165_MOUSE RING finger protein 165 OS=Mus musculus GN=Rnf165 PE=2 SV=1
Length = 347
Score = 63.2 bits (152), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 60/125 (48%), Gaps = 7/125 (5%)
Query: 134 FDELDYETLRALDADNVPTAASMSEEEINTLPVHKYKVSGSQSGASSMQLGSSSSPAEQK 193
+ +L + L+ L+ +A S EE+ L + ++ GA + + P + K
Sbjct: 216 YPQLHFLALQGLNPSRHTSAVRESYEELLQL---EDRLGNVTRGAVQNTIERFTFPHKYK 272
Query: 194 KLETSISVGNL----KTEDELTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQQGTC 249
K S G +++ + CT+CL + GE VR LPC+H FH C+D WL C
Sbjct: 273 KRRPQDSKGKKDEGEESDTDEKCTICLSMLEDGEDVRRLPCMHLFHQLCVDQWLAMSKKC 332
Query: 250 PVCKL 254
P+C++
Sbjct: 333 PICRV 337
>sp|Q8AWW4|RN128_XENLA E3 ubiquitin-protein ligase RNF128 OS=Xenopus laevis GN=rnf128 PE=2
SV=2
Length = 404
Score = 63.2 bits (152), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 29/70 (41%), Positives = 40/70 (57%), Gaps = 6/70 (8%)
Query: 190 AEQKKLETSISVGNLKTEDEL------TCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWL 243
AE KK + + +K D++ +C VC+E ++VR L C H FH NCIDPWL
Sbjct: 232 AEAKKAIGKLQLRTIKQGDKVLGPDGDSCAVCIEPYKPSDVVRILTCNHFFHKNCIDPWL 291
Query: 244 RQQGTCPVCK 253
+ TCP+CK
Sbjct: 292 LEHRTCPMCK 301
>sp|Q9BV68|RN126_HUMAN RING finger protein 126 OS=Homo sapiens GN=RNF126 PE=1 SV=1
Length = 326
Score = 63.2 bits (152), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 40/71 (56%), Gaps = 2/71 (2%)
Query: 185 SSSSPAEQKKLE--TSISVGNLKTEDELTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPW 242
+ PA+++K++ ++ V L C VC + +GE VR LPC H FH CI PW
Sbjct: 200 TGPPPADKEKIQALPTVPVTEEHVGSGLECPVCKDDYALGERVRQLPCNHLFHDGCIVPW 259
Query: 243 LRQQGTCPVCK 253
L Q +CPVC+
Sbjct: 260 LEQHDSCPVCR 270
>sp|Q7T037|RF12B_XENLA E3 ubiquitin-protein ligase RNF12-B OS=Xenopus laevis GN=rnf12-b
PE=2 SV=1
Length = 757
Score = 63.2 bits (152), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 36/57 (63%), Gaps = 1/57 (1%)
Query: 198 SISVGNLKTEDEL-TCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQQGTCPVCK 253
++S N D L TC+VC+ + G +R LPC H++H +CID WL + TCP+C+
Sbjct: 688 NLSTRNYGENDALKTCSVCITEYTEGNKLRKLPCSHEYHIHCIDRWLSENSTCPICR 744
>sp|Q68DV7|RNF43_HUMAN E3 ubiquitin-protein ligase RNF43 OS=Homo sapiens GN=RNF43 PE=1
SV=1
Length = 783
Score = 62.8 bits (151), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 22/41 (53%), Positives = 31/41 (75%)
Query: 212 CTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQQGTCPVC 252
C +CLE+ + G+ +R + CLH+FH NC+DPWL Q TCP+C
Sbjct: 272 CAICLEEFSEGQELRVISCLHEFHRNCVDPWLHQHRTCPLC 312
>sp|Q7TPV2|DZIP3_MOUSE E3 ubiquitin-protein ligase DZIP3 OS=Mus musculus GN=Dzip3 PE=2 SV=2
Length = 1204
Score = 62.8 bits (151), Expect = 3e-09, Method: Composition-based stats.
Identities = 38/126 (30%), Positives = 58/126 (46%), Gaps = 20/126 (15%)
Query: 134 FDELDYETLRALDADNVPTAASMSEEEINTLPVHKYKVSGSQSGASSMQLGSSSSPAEQK 193
FDE+ Y+ + ++ + +++ N P H + SQ A P + K
Sbjct: 1075 FDEIVYKISQMIEPKKSESEEKSAQDGNNASPSH----TASQPNA----------PQDPK 1120
Query: 194 KLETSISVGNLKTEDELT-----CTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQQGT 248
+ S + K D C +C E ++ E + LPC H+FH+ CI PWL QQGT
Sbjct: 1121 SAQGSATWEGDKDMDNEEEEEEPCVICHENLS-PENLSVLPCAHKFHSQCIRPWLMQQGT 1179
Query: 249 CPVCKL 254
CP C+L
Sbjct: 1180 CPTCRL 1185
>sp|Q66HG0|RNF13_RAT E3 ubiquitin-protein ligase RNF13 OS=Rattus norvegicus GN=Rnf13
PE=2 SV=1
Length = 380
Score = 62.8 bits (151), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 26/60 (43%), Positives = 36/60 (60%), Gaps = 2/60 (3%)
Query: 199 ISVGNLKTEDEL-TCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWL-RQQGTCPVCKLRA 256
+ V K DE C +CLE+ G+ +R LPC H +H C+DPWL + + TCPVCK +
Sbjct: 226 LPVHKFKKGDEYDVCAICLEEYEDGDKLRILPCSHAYHCKCVDPWLTKTKKTCPVCKQKV 285
>sp|O54965|RNF13_MOUSE E3 ubiquitin-protein ligase RNF13 OS=Mus musculus GN=Rnf13 PE=1
SV=2
Length = 381
Score = 62.8 bits (151), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 26/60 (43%), Positives = 36/60 (60%), Gaps = 2/60 (3%)
Query: 199 ISVGNLKTEDEL-TCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWL-RQQGTCPVCKLRA 256
+ V K DE C +CLE+ G+ +R LPC H +H C+DPWL + + TCPVCK +
Sbjct: 226 LPVHKFKKGDEYDVCAICLEEYEDGDKLRILPCSHAYHCKCVDPWLTKTKKTCPVCKQKV 285
>sp|Q8GT74|NIP2_ARATH NEP1-interacting protein 2 OS=Arabidopsis thaliana GN=NIP2 PE=1
SV=1
Length = 241
Score = 62.4 bits (150), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 25/49 (51%), Positives = 35/49 (71%), Gaps = 1/49 (2%)
Query: 206 TEDELTCTVCLEQVNVGEIVRSLP-CLHQFHANCIDPWLRQQGTCPVCK 253
+E+ +C+VCL+ +GE VRSLP C H FH CID WL + G+CP+C+
Sbjct: 190 SENTDSCSVCLQDFQLGETVRSLPHCHHMFHLPCIDNWLLRHGSCPMCR 238
>sp|Q9DBU5|RNF6_MOUSE E3 ubiquitin-protein ligase RNF6 OS=Mus musculus GN=Rnf6 PE=1 SV=1
Length = 667
Score = 62.4 bits (150), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 22/42 (52%), Positives = 29/42 (69%)
Query: 212 CTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQQGTCPVCK 253
C+VC+ G +R LPCLH+FH +CID WL + TCPVC+
Sbjct: 614 CSVCISDYVAGNKLRQLPCLHEFHIHCIDRWLSENCTCPVCR 655
>sp|Q8GYT9|SIS3_ARATH E3 ubiquitin-protein ligase SIS3 OS=Arabidopsis thaliana GN=SIS3
PE=2 SV=2
Length = 358
Score = 61.6 bits (148), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 46/89 (51%), Gaps = 5/89 (5%)
Query: 170 KVSGSQSGASSMQLGSSSSPAEQKKLETSIS---VGNLKT--EDELTCTVCLEQVNVGEI 224
++ G A++ G +PA+ + +E I LK +D C +CLE+ ++G
Sbjct: 188 EMRGISQDAATYHPGLYLTPAQTEAVEALIQELPKFRLKAVPDDCGECLICLEEFHIGHE 247
Query: 225 VRSLPCLHQFHANCIDPWLRQQGTCPVCK 253
VR LPC H FH CID WLR CP C+
Sbjct: 248 VRGLPCAHNFHVECIDQWLRLNVKCPRCR 276
>sp|Q0VD51|RNF13_BOVIN E3 ubiquitin-protein ligase RNF13 OS=Bos taurus GN=RNF13 PE=2 SV=1
Length = 380
Score = 61.6 bits (148), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 36/60 (60%), Gaps = 2/60 (3%)
Query: 199 ISVGNLKTEDEL-TCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWL-RQQGTCPVCKLRA 256
+ V K DE C +CL++ G+ +R LPC H +H C+DPWL + + TCPVCK +
Sbjct: 226 LPVHKFKKGDEYDVCAICLDEYEDGDKLRILPCSHAYHCKCVDPWLTKTKKTCPVCKQKV 285
>sp|Q90972|RNF13_CHICK E3 ubiquitin-protein ligase RNF13 OS=Gallus gallus GN=RNF13 PE=1
SV=1
Length = 381
Score = 61.6 bits (148), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 36/60 (60%), Gaps = 2/60 (3%)
Query: 199 ISVGNLKTEDEL-TCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWL-RQQGTCPVCKLRA 256
+ V K DE C +CL++ G+ +R LPC H +H C+DPWL + + TCPVCK +
Sbjct: 226 LPVHKFKKGDEYDVCAICLDEYEDGDKLRILPCSHAYHCKCVDPWLTKTKKTCPVCKQKV 285
>sp|Q5RCV8|RNF13_PONAB E3 ubiquitin-protein ligase RNF13 OS=Pongo abelii GN=RNF13 PE=2
SV=1
Length = 381
Score = 61.2 bits (147), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 36/60 (60%), Gaps = 2/60 (3%)
Query: 199 ISVGNLKTEDEL-TCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWL-RQQGTCPVCKLRA 256
+ V K DE C +CL++ G+ +R LPC H +H C+DPWL + + TCPVCK +
Sbjct: 226 LPVHKFKKGDEYDVCAICLDEYEDGDKLRILPCSHAYHCKCVDPWLTKTKKTCPVCKQKV 285
>sp|O43567|RNF13_HUMAN E3 ubiquitin-protein ligase RNF13 OS=Homo sapiens GN=RNF13 PE=1
SV=1
Length = 381
Score = 61.2 bits (147), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 36/60 (60%), Gaps = 2/60 (3%)
Query: 199 ISVGNLKTEDEL-TCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWL-RQQGTCPVCKLRA 256
+ V K DE C +CL++ G+ +R LPC H +H C+DPWL + + TCPVCK +
Sbjct: 226 LPVHKFKKGDEYDVCAICLDEYEDGDKLRILPCSHAYHCKCVDPWLTKTKKTCPVCKQKV 285
>sp|Q5SPX3|RN215_MOUSE RING finger protein 215 OS=Mus musculus GN=Rnf215 PE=2 SV=1
Length = 379
Score = 61.2 bits (147), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 23/44 (52%), Positives = 30/44 (68%)
Query: 211 TCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQQGTCPVCKL 254
TC VCL+ + +R LPC H+FH +C+DPWL Q TCP+CK
Sbjct: 326 TCAVCLDYFCNKQWLRVLPCKHEFHRDCVDPWLMLQQTCPLCKF 369
>sp|Q9Y6U7|RN215_HUMAN RING finger protein 215 OS=Homo sapiens GN=RNF215 PE=2 SV=2
Length = 377
Score = 61.2 bits (147), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 23/44 (52%), Positives = 30/44 (68%)
Query: 211 TCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQQGTCPVCKL 254
TC VCL+ + +R LPC H+FH +C+DPWL Q TCP+CK
Sbjct: 324 TCAVCLDYFCNKQWLRVLPCKHEFHRDCVDPWLMLQQTCPLCKF 367
>sp|Q9Y252|RNF6_HUMAN E3 ubiquitin-protein ligase RNF6 OS=Homo sapiens GN=RNF6 PE=1 SV=1
Length = 685
Score = 61.2 bits (147), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 29/42 (69%)
Query: 212 CTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQQGTCPVCK 253
C+VC+ G +R LPC+H+FH +CID WL + TCP+C+
Sbjct: 632 CSVCISDYVTGNKLRQLPCMHEFHIHCIDRWLSENCTCPICR 673
>sp|Q5M974|RN181_XENTR E3 ubiquitin-protein ligase RNF181 OS=Xenopus tropicalis GN=rnf181
PE=2 SV=1
Length = 156
Score = 61.2 bits (147), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 42/67 (62%), Gaps = 2/67 (2%)
Query: 189 PAEQKKLET--SISVGNLKTEDELTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQQ 246
PA +K +E+ ++V + + L C VCL + GE VR LPC H FH++CI PWL +
Sbjct: 54 PAAKKVVESLPKVTVTPEQADAALKCPVCLLEFEEGETVRQLPCEHLFHSSCILPWLGKT 113
Query: 247 GTCPVCK 253
+CP+C+
Sbjct: 114 NSCPLCR 120
>sp|Q5SSZ7|ZNRF3_MOUSE E3 ubiquitin-protein ligase ZNRF3 OS=Mus musculus GN=Znrf3 PE=2
SV=1
Length = 913
Score = 60.8 bits (146), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 22/42 (52%), Positives = 29/42 (69%)
Query: 212 CTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQQGTCPVCK 253
C +CLE+ GE +R +PC H+FH C+DPWL Q TCP C+
Sbjct: 290 CAICLEKYIDGEELRVIPCTHRFHRKCVDPWLLQHHTCPHCR 331
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.133 0.393
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 93,298,270
Number of Sequences: 539616
Number of extensions: 3521704
Number of successful extensions: 10838
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 333
Number of HSP's successfully gapped in prelim test: 197
Number of HSP's that attempted gapping in prelim test: 10344
Number of HSP's gapped (non-prelim): 585
length of query: 274
length of database: 191,569,459
effective HSP length: 116
effective length of query: 158
effective length of database: 128,974,003
effective search space: 20377892474
effective search space used: 20377892474
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 60 (27.7 bits)