Query 024005
Match_columns 274
No_of_seqs 215 out of 1931
Neff 6.9
Searched_HMMs 46136
Date Fri Mar 29 08:14:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024005.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024005hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4628 Predicted E3 ubiquitin 99.6 3.7E-16 8.1E-21 145.1 5.8 82 155-267 206-288 (348)
2 PF13639 zf-RING_2: Ring finge 99.5 4.7E-15 1E-19 98.7 2.2 43 211-253 2-44 (44)
3 PF12678 zf-rbx1: RING-H2 zinc 99.2 4.9E-12 1.1E-16 93.4 3.8 45 209-253 19-73 (73)
4 PHA02929 N1R/p28-like protein; 99.2 1.5E-11 3.2E-16 109.8 4.6 51 208-258 173-228 (238)
5 COG5540 RING-finger-containing 99.1 3E-11 6.4E-16 109.5 3.4 51 208-258 322-373 (374)
6 KOG0317 Predicted E3 ubiquitin 99.1 3.2E-11 6.9E-16 108.7 3.1 51 206-259 236-286 (293)
7 PLN03208 E3 ubiquitin-protein 99.1 5.3E-11 1.2E-15 102.6 4.1 50 207-259 16-81 (193)
8 COG5243 HRD1 HRD ubiquitin lig 99.1 4.5E-11 9.8E-16 110.8 3.7 51 206-256 284-344 (491)
9 PF13920 zf-C3HC4_3: Zinc fing 99.0 1.8E-10 4E-15 78.6 2.7 47 209-258 2-49 (50)
10 KOG0823 Predicted E3 ubiquitin 99.0 2.8E-10 6E-15 100.0 3.6 53 206-261 44-99 (230)
11 PF13923 zf-C3HC4_2: Zinc fing 99.0 4.6E-10 1E-14 72.7 3.0 39 212-252 1-39 (39)
12 cd00162 RING RING-finger (Real 98.9 7.7E-10 1.7E-14 72.1 3.5 44 211-256 1-45 (45)
13 KOG0320 Predicted E3 ubiquitin 98.9 5.4E-10 1.2E-14 94.5 3.1 53 206-259 128-180 (187)
14 KOG0802 E3 ubiquitin ligase [P 98.8 1.7E-09 3.7E-14 107.6 2.5 52 207-258 289-342 (543)
15 PF15227 zf-C3HC4_4: zinc fing 98.8 3.8E-09 8.3E-14 69.7 2.5 38 212-252 1-42 (42)
16 smart00504 Ubox Modified RING 98.8 7.4E-09 1.6E-13 73.4 3.8 46 210-258 2-47 (63)
17 PHA02926 zinc finger-like prot 98.7 5.4E-09 1.2E-13 91.5 2.9 51 208-258 169-231 (242)
18 PF12861 zf-Apc11: Anaphase-pr 98.7 7.6E-09 1.6E-13 78.0 3.3 51 208-258 20-83 (85)
19 PF14634 zf-RING_5: zinc-RING 98.7 1E-08 2.2E-13 68.2 2.8 44 211-254 1-44 (44)
20 PF00097 zf-C3HC4: Zinc finger 98.7 1.1E-08 2.4E-13 66.6 2.4 39 212-252 1-41 (41)
21 smart00184 RING Ring finger. E 98.6 2.2E-08 4.8E-13 62.8 3.2 38 212-252 1-39 (39)
22 TIGR00599 rad18 DNA repair pro 98.6 1.9E-08 4.1E-13 96.0 3.2 49 207-258 24-72 (397)
23 COG5574 PEX10 RING-finger-cont 98.5 6.6E-08 1.4E-12 86.5 2.3 50 207-259 213-264 (271)
24 KOG1734 Predicted RING-contain 98.5 4.7E-08 1E-12 87.6 1.0 53 207-259 222-283 (328)
25 COG5194 APC11 Component of SCF 98.4 1.8E-07 3.9E-12 69.1 2.9 47 212-258 34-82 (88)
26 KOG0287 Postreplication repair 98.3 1.3E-07 2.8E-12 87.2 0.9 50 207-259 21-70 (442)
27 KOG2164 Predicted E3 ubiquitin 98.3 2.4E-07 5.3E-12 89.6 2.6 51 209-262 186-241 (513)
28 PF04564 U-box: U-box domain; 98.3 4.9E-07 1.1E-11 66.6 2.6 49 208-259 3-52 (73)
29 smart00744 RINGv The RING-vari 98.3 5.9E-07 1.3E-11 61.2 2.8 42 211-253 1-49 (49)
30 KOG0804 Cytoplasmic Zn-finger 98.2 6.9E-07 1.5E-11 85.2 3.1 49 207-257 173-222 (493)
31 PF13445 zf-RING_UBOX: RING-ty 98.2 9.1E-07 2E-11 58.6 2.6 38 212-250 1-43 (43)
32 KOG1493 Anaphase-promoting com 98.2 3.6E-07 7.8E-12 67.0 0.5 49 209-257 20-81 (84)
33 COG5432 RAD18 RING-finger-cont 98.2 6.8E-07 1.5E-11 81.1 1.7 50 207-259 23-72 (391)
34 TIGR00570 cdk7 CDK-activating 98.1 1.8E-06 3.9E-11 79.7 3.3 51 209-259 3-56 (309)
35 KOG2177 Predicted E3 ubiquitin 98.1 1.1E-06 2.4E-11 78.0 1.4 45 207-254 11-55 (386)
36 KOG2930 SCF ubiquitin ligase, 98.1 1.7E-06 3.6E-11 67.1 2.1 51 206-256 43-107 (114)
37 KOG0828 Predicted E3 ubiquitin 98.1 1.5E-06 3.2E-11 83.7 1.6 52 207-258 569-635 (636)
38 PF11793 FANCL_C: FANCL C-term 98.0 1.1E-06 2.3E-11 64.3 0.2 50 210-259 3-68 (70)
39 KOG4265 Predicted E3 ubiquitin 98.0 4.7E-06 1E-10 77.7 3.1 55 207-264 288-343 (349)
40 COG5219 Uncharacterized conser 97.9 2.3E-06 5.1E-11 87.6 0.8 51 207-257 1467-1523(1525)
41 KOG0311 Predicted E3 ubiquitin 97.9 1.5E-06 3.3E-11 80.7 -1.5 57 207-266 41-99 (381)
42 KOG0825 PHD Zn-finger protein 97.9 3.4E-06 7.3E-11 85.0 0.0 51 207-257 121-171 (1134)
43 KOG0827 Predicted E3 ubiquitin 97.8 9.2E-06 2E-10 76.3 1.8 47 211-257 6-56 (465)
44 PF14835 zf-RING_6: zf-RING of 97.7 9E-06 2E-10 58.0 -0.0 48 208-259 6-53 (65)
45 KOG1645 RING-finger-containing 97.6 3.1E-05 6.7E-10 73.3 3.0 50 208-257 3-56 (463)
46 KOG1039 Predicted E3 ubiquitin 97.6 3.3E-05 7.1E-10 72.7 2.5 53 207-259 159-223 (344)
47 KOG0824 Predicted E3 ubiquitin 97.6 2.7E-05 5.8E-10 71.2 1.7 51 209-262 7-58 (324)
48 KOG4445 Uncharacterized conser 97.5 2.3E-05 5E-10 71.5 0.2 52 208-259 114-188 (368)
49 KOG0978 E3 ubiquitin ligase in 97.4 3.7E-05 8.1E-10 77.8 0.4 50 208-260 642-692 (698)
50 KOG4159 Predicted E3 ubiquitin 97.4 0.00011 2.4E-09 70.4 3.5 49 207-258 82-130 (398)
51 KOG4172 Predicted E3 ubiquitin 97.4 4.6E-05 1E-09 52.5 0.2 46 210-258 8-55 (62)
52 KOG1941 Acetylcholine receptor 97.1 0.00017 3.7E-09 68.1 1.4 51 207-257 363-416 (518)
53 KOG1785 Tyrosine kinase negati 97.1 0.00017 3.7E-09 68.3 1.1 48 209-259 369-418 (563)
54 PF11789 zf-Nse: Zinc-finger o 97.0 0.00039 8.4E-09 48.8 2.1 42 208-251 10-53 (57)
55 COG5152 Uncharacterized conser 96.9 0.00037 8.1E-09 60.4 1.7 45 208-255 195-239 (259)
56 KOG1428 Inhibitor of type V ad 96.9 0.00054 1.2E-08 73.3 2.5 54 205-258 3482-3545(3738)
57 KOG0297 TNF receptor-associate 96.9 0.00043 9.4E-09 66.5 1.7 53 207-261 19-71 (391)
58 KOG4692 Predicted E3 ubiquitin 96.9 0.00085 1.8E-08 62.8 3.4 51 205-258 418-468 (489)
59 KOG2660 Locus-specific chromos 96.8 0.00032 6.9E-09 65.0 -0.1 49 208-259 14-63 (331)
60 KOG2879 Predicted E3 ubiquitin 96.6 0.0025 5.3E-08 57.9 4.0 51 207-259 237-289 (298)
61 PF12906 RINGv: RING-variant d 96.6 0.0017 3.8E-08 43.7 2.3 40 212-252 1-47 (47)
62 KOG0801 Predicted E3 ubiquitin 96.4 0.00092 2E-08 56.2 0.5 30 207-236 175-204 (205)
63 KOG1813 Predicted E3 ubiquitin 96.2 0.0021 4.4E-08 58.9 1.6 48 208-258 240-287 (313)
64 KOG3970 Predicted E3 ubiquitin 96.2 0.0034 7.4E-08 55.5 2.8 50 208-258 49-106 (299)
65 PF05883 Baculo_RING: Baculovi 96.2 0.0018 3.9E-08 53.0 0.8 35 209-243 26-66 (134)
66 PHA02825 LAP/PHD finger-like p 96.0 0.0056 1.2E-07 51.4 2.9 48 207-258 6-60 (162)
67 PHA02862 5L protein; Provision 96.0 0.0044 9.5E-08 51.2 2.2 44 210-257 3-53 (156)
68 PF14570 zf-RING_4: RING/Ubox 95.9 0.0051 1.1E-07 41.6 1.8 45 212-256 1-47 (48)
69 KOG1571 Predicted E3 ubiquitin 95.9 0.0056 1.2E-07 57.5 2.7 46 207-258 303-348 (355)
70 PF10367 Vps39_2: Vacuolar sor 95.7 0.0043 9.2E-08 48.0 1.2 33 207-240 76-108 (109)
71 KOG4275 Predicted E3 ubiquitin 95.7 0.0025 5.5E-08 58.3 -0.2 42 209-257 300-342 (350)
72 KOG3268 Predicted E3 ubiquitin 95.7 0.007 1.5E-07 51.7 2.3 56 207-262 163-233 (234)
73 COG5236 Uncharacterized conser 95.5 0.01 2.2E-07 55.5 3.1 50 204-256 56-107 (493)
74 KOG1952 Transcription factor N 95.3 0.0097 2.1E-07 61.3 2.4 48 207-254 189-244 (950)
75 KOG1814 Predicted E3 ubiquitin 95.2 0.011 2.4E-07 56.5 2.1 37 208-244 183-219 (445)
76 COG5175 MOT2 Transcriptional r 94.9 0.015 3.2E-07 54.4 2.1 51 208-258 13-65 (480)
77 KOG3039 Uncharacterized conser 94.9 0.024 5.2E-07 50.9 3.3 52 208-259 220-272 (303)
78 KOG2114 Vacuolar assembly/sort 94.9 0.014 3.1E-07 60.1 2.0 42 209-255 840-881 (933)
79 PF14447 Prok-RING_4: Prokaryo 94.9 0.015 3.2E-07 40.3 1.5 47 208-259 6-52 (55)
80 KOG1002 Nucleotide excision re 94.8 0.012 2.7E-07 57.8 1.3 54 207-263 534-592 (791)
81 KOG4739 Uncharacterized protei 94.7 0.01 2.2E-07 52.9 0.5 46 211-259 5-50 (233)
82 PHA03096 p28-like protein; Pro 94.7 0.015 3.3E-07 53.6 1.5 36 210-245 179-219 (284)
83 PF08746 zf-RING-like: RING-li 94.6 0.014 3.1E-07 38.5 0.9 41 212-252 1-43 (43)
84 KOG0826 Predicted E3 ubiquitin 94.3 0.032 7E-07 51.9 2.7 47 207-256 298-345 (357)
85 COG5222 Uncharacterized conser 94.1 0.024 5.3E-07 52.1 1.6 43 209-254 274-318 (427)
86 PF07800 DUF1644: Protein of u 93.8 0.056 1.2E-06 45.5 3.1 33 209-244 2-47 (162)
87 KOG0827 Predicted E3 ubiquitin 93.7 0.005 1.1E-07 58.4 -3.8 51 209-259 196-247 (465)
88 KOG4185 Predicted E3 ubiquitin 93.4 0.045 9.8E-07 50.3 2.0 47 210-256 4-54 (296)
89 PF10272 Tmpp129: Putative tra 92.8 0.14 2.9E-06 48.8 4.3 29 230-258 311-352 (358)
90 PF14446 Prok-RING_1: Prokaryo 92.4 0.19 4.2E-06 34.8 3.4 44 208-255 4-50 (54)
91 KOG0298 DEAD box-containing he 92.3 0.04 8.6E-07 59.3 0.1 44 208-254 1152-1196(1394)
92 PF03854 zf-P11: P-11 zinc fin 92.3 0.044 9.6E-07 36.8 0.3 44 211-259 4-48 (50)
93 KOG3002 Zn finger protein [Gen 92.3 0.078 1.7E-06 49.3 1.9 45 207-258 46-92 (299)
94 KOG1940 Zn-finger protein [Gen 92.3 0.057 1.2E-06 49.5 1.0 45 210-254 159-204 (276)
95 KOG1001 Helicase-like transcri 91.8 0.068 1.5E-06 54.9 1.0 46 210-259 455-502 (674)
96 PF04641 Rtf2: Rtf2 RING-finge 91.7 0.2 4.4E-06 45.5 3.9 54 207-261 111-165 (260)
97 KOG2034 Vacuolar sorting prote 91.5 0.083 1.8E-06 55.0 1.3 36 207-243 815-850 (911)
98 KOG0309 Conserved WD40 repeat- 90.4 0.15 3.1E-06 52.4 1.8 40 211-251 1030-1069(1081)
99 PF05290 Baculo_IE-1: Baculovi 90.0 0.23 5E-06 40.7 2.3 52 208-261 79-136 (140)
100 KOG1609 Protein involved in mR 89.8 0.17 3.6E-06 46.5 1.5 50 209-258 78-135 (323)
101 KOG4367 Predicted Zn-finger pr 89.0 0.22 4.8E-06 48.2 1.8 36 207-245 2-37 (699)
102 KOG1100 Predicted E3 ubiquitin 88.9 0.22 4.7E-06 43.9 1.6 40 212-258 161-201 (207)
103 KOG2932 E3 ubiquitin ligase in 87.6 0.22 4.8E-06 46.2 0.8 49 209-261 90-138 (389)
104 COG5183 SSM4 Protein involved 86.8 0.44 9.5E-06 49.4 2.4 51 207-258 10-67 (1175)
105 COG5220 TFB3 Cdk activating ki 85.9 0.44 9.6E-06 42.8 1.7 47 208-254 9-61 (314)
106 KOG2817 Predicted E3 ubiquitin 85.6 0.66 1.4E-05 44.4 2.8 46 207-252 332-380 (394)
107 KOG3800 Predicted E3 ubiquitin 85.0 0.75 1.6E-05 42.3 2.8 46 211-256 2-50 (300)
108 KOG3899 Uncharacterized conser 84.6 0.46 1E-05 43.8 1.3 30 230-259 325-367 (381)
109 KOG1812 Predicted E3 ubiquitin 84.5 0.36 7.8E-06 46.5 0.5 38 208-245 145-183 (384)
110 KOG3161 Predicted E3 ubiquitin 84.1 0.27 5.9E-06 49.7 -0.5 45 208-255 10-55 (861)
111 KOG0825 PHD Zn-finger protein 83.1 0.67 1.4E-05 48.0 1.8 52 207-258 94-155 (1134)
112 KOG1829 Uncharacterized conser 82.5 0.43 9.4E-06 48.1 0.2 43 208-253 510-557 (580)
113 KOG3053 Uncharacterized conser 80.9 0.68 1.5E-05 42.0 0.8 50 207-256 18-81 (293)
114 KOG0802 E3 ubiquitin ligase [P 80.2 1.2 2.6E-05 44.8 2.4 51 207-264 477-527 (543)
115 KOG4362 Transcriptional regula 77.5 0.58 1.3E-05 47.9 -0.7 47 208-257 20-69 (684)
116 KOG4718 Non-SMC (structural ma 77.2 1.2 2.7E-05 39.2 1.3 45 207-253 179-223 (235)
117 KOG0269 WD40 repeat-containing 75.2 2.3 5.1E-05 43.9 2.8 41 210-251 780-820 (839)
118 KOG1812 Predicted E3 ubiquitin 74.0 1.5 3.3E-05 42.2 1.1 44 209-252 306-351 (384)
119 PF07123 PsbW: Photosystem II 69.4 4.1 8.9E-05 33.5 2.5 26 56-81 100-125 (138)
120 PF13901 DUF4206: Domain of un 69.0 3.4 7.4E-05 36.2 2.1 41 209-254 152-197 (202)
121 KOG1815 Predicted E3 ubiquitin 68.0 2.8 6E-05 41.0 1.5 36 208-245 69-104 (444)
122 PF02891 zf-MIZ: MIZ/SP-RING z 65.0 2.8 6E-05 28.4 0.6 43 210-255 3-50 (50)
123 KOG2068 MOT2 transcription fac 65.0 5.7 0.00012 37.3 2.8 56 208-263 248-304 (327)
124 KOG3579 Predicted E3 ubiquitin 64.4 5.2 0.00011 37.0 2.4 38 207-247 266-307 (352)
125 KOG0824 Predicted E3 ubiquitin 64.0 2.8 6E-05 39.0 0.6 54 207-262 103-156 (324)
126 KOG2066 Vacuolar assembly/sort 62.6 3.3 7.2E-05 43.0 0.9 45 207-252 782-830 (846)
127 PF06844 DUF1244: Protein of u 61.6 4.8 0.0001 29.0 1.3 12 233-244 11-22 (68)
128 PLN02189 cellulose synthase 60.8 13 0.00027 40.2 4.8 51 208-258 33-88 (1040)
129 PLN00077 photosystem II reacti 60.7 6 0.00013 31.7 1.9 26 56-81 89-114 (128)
130 smart00249 PHD PHD zinc finger 58.5 6.3 0.00014 24.8 1.4 31 211-241 1-31 (47)
131 PF11241 DUF3043: Protein of u 58.3 12 0.00027 32.0 3.5 10 20-29 61-70 (170)
132 COG5416 Uncharacterized integr 55.7 31 0.00067 26.8 4.9 26 40-65 31-56 (98)
133 KOG3005 GIY-YIG type nuclease 54.7 6.7 0.00015 35.9 1.4 47 209-255 182-241 (276)
134 PLN02436 cellulose synthase A 54.4 19 0.00041 39.1 4.8 50 208-257 35-89 (1094)
135 COG5109 Uncharacterized conser 54.4 9.5 0.00021 35.8 2.3 45 207-252 334-382 (396)
136 KOG3039 Uncharacterized conser 53.9 11 0.00023 34.3 2.5 34 207-243 41-74 (303)
137 PF00628 PHD: PHD-finger; Int 53.7 7.1 0.00015 25.8 1.1 43 212-254 2-50 (51)
138 PLN00092 photosystem I reactio 52.7 7.5 0.00016 31.5 1.2 26 56-81 99-124 (137)
139 PF14569 zf-UDP: Zinc-binding 51.4 27 0.00059 26.0 3.9 51 208-258 8-63 (80)
140 PLN00082 photosystem II reacti 51.1 14 0.0003 26.4 2.2 24 56-79 28-51 (67)
141 PF01363 FYVE: FYVE zinc finge 51.0 8.6 0.00019 27.2 1.2 35 208-242 8-43 (69)
142 PF04710 Pellino: Pellino; In 49.6 5.5 0.00012 38.4 0.0 44 209-255 277-337 (416)
143 KOG3113 Uncharacterized conser 45.6 19 0.00041 32.8 2.7 53 207-261 109-162 (293)
144 PF07975 C1_4: TFIIH C1-like d 45.4 12 0.00026 25.6 1.2 42 212-253 2-50 (51)
145 KOG2807 RNA polymerase II tran 44.6 16 0.00035 34.4 2.2 43 212-254 333-375 (378)
146 smart00132 LIM Zinc-binding do 44.2 27 0.00059 20.9 2.6 37 211-256 1-37 (39)
147 PF07191 zinc-ribbons_6: zinc- 43.4 2.3 5E-05 31.1 -2.8 40 210-257 2-41 (70)
148 KOG3726 Uncharacterized conser 43.0 10 0.00022 38.9 0.8 62 210-274 655-717 (717)
149 PF05814 DUF843: Baculovirus p 41.6 89 0.0019 23.6 5.4 34 47-80 12-45 (83)
150 PRK12585 putative monovalent c 40.1 36 0.00078 29.7 3.5 23 25-47 34-57 (197)
151 PLN02400 cellulose synthase 39.2 35 0.00075 37.2 4.0 51 208-258 35-90 (1085)
152 PF10571 UPF0547: Uncharacteri 38.1 15 0.00033 21.4 0.7 22 211-234 2-24 (26)
153 PF13717 zinc_ribbon_4: zinc-r 37.6 17 0.00036 22.8 0.8 25 211-235 4-36 (36)
154 COG4847 Uncharacterized protei 36.5 37 0.00081 26.3 2.7 36 209-245 6-41 (103)
155 smart00064 FYVE Protein presen 36.3 28 0.00062 24.3 2.0 36 209-244 10-46 (68)
156 PF13832 zf-HC5HC2H_2: PHD-zin 36.2 29 0.00063 26.7 2.2 32 208-241 54-87 (110)
157 PF15052 TMEM169: TMEM169 prot 35.3 48 0.0011 27.0 3.3 34 56-89 61-94 (133)
158 PLN02638 cellulose synthase A 35.2 62 0.0014 35.3 5.1 50 208-257 16-70 (1079)
159 COG3492 Uncharacterized protei 34.4 18 0.00039 27.8 0.7 13 233-245 42-54 (104)
160 PF05715 zf-piccolo: Piccolo Z 34.3 28 0.0006 24.6 1.6 16 246-261 2-17 (61)
161 cd00065 FYVE FYVE domain; Zinc 33.0 30 0.00066 23.2 1.6 34 210-243 3-37 (57)
162 KOG4430 Topoisomerase I-bindin 32.9 15 0.00033 36.9 0.2 60 207-266 258-318 (553)
163 KOG3842 Adaptor protein Pellin 32.8 40 0.00086 31.8 2.8 51 208-258 340-415 (429)
164 KOG4218 Nuclear hormone recept 31.8 14 0.00031 35.1 -0.2 48 207-255 13-76 (475)
165 TIGR00622 ssl1 transcription f 31.6 54 0.0012 26.2 3.0 44 210-253 56-110 (112)
166 PF15128 T_cell_tran_alt: T-ce 31.0 82 0.0018 23.9 3.7 25 48-81 27-51 (92)
167 PF07649 C1_3: C1-like domain; 30.9 35 0.00077 20.1 1.5 29 211-239 2-30 (30)
168 PF04423 Rad50_zn_hook: Rad50 30.0 20 0.00043 24.3 0.3 12 248-259 22-33 (54)
169 PF06750 DiS_P_DiS: Bacterial 29.7 30 0.00066 26.4 1.3 38 210-259 34-71 (92)
170 PF06906 DUF1272: Protein of u 29.6 69 0.0015 22.4 2.9 44 211-257 7-52 (57)
171 PF08999 SP_C-Propep: Surfacta 29.5 72 0.0016 24.0 3.2 23 30-52 27-49 (93)
172 PF00412 LIM: LIM domain; Int 29.1 54 0.0012 21.8 2.4 40 212-260 1-40 (58)
173 PF13771 zf-HC5HC2H: PHD-like 28.5 36 0.00078 25.1 1.5 33 209-241 36-68 (90)
174 PF11119 DUF2633: Protein of u 28.4 1.3E+02 0.0029 21.2 4.2 17 36-52 9-25 (59)
175 PF13719 zinc_ribbon_5: zinc-r 28.2 32 0.00069 21.6 1.0 25 211-235 4-36 (37)
176 PF11044 TMEMspv1-c74-12: Plec 27.9 1.5E+02 0.0033 19.7 4.1 14 75-88 22-35 (49)
177 PF04710 Pellino: Pellino; In 27.7 20 0.00043 34.7 0.0 50 209-258 328-402 (416)
178 PF07172 GRP: Glycine rich pro 27.6 47 0.001 25.6 2.1 10 38-47 3-12 (95)
179 KOG1729 FYVE finger containing 26.9 12 0.00025 34.8 -1.7 39 209-247 214-252 (288)
180 PLN02915 cellulose synthase A 26.8 1.1E+02 0.0023 33.5 5.1 51 208-258 14-69 (1044)
181 PF14169 YdjO: Cold-inducible 26.7 30 0.00066 24.4 0.8 15 246-260 39-53 (59)
182 KOG4185 Predicted E3 ubiquitin 26.6 12 0.00025 34.3 -1.8 47 209-255 207-265 (296)
183 PF07219 HemY_N: HemY protein 26.5 2.3E+02 0.005 21.8 5.9 39 31-76 9-47 (108)
184 KOG1245 Chromatin remodeling c 26.1 21 0.00045 40.1 -0.2 50 207-256 1106-1159(1404)
185 KOG3799 Rab3 effector RIM1 and 25.5 18 0.00038 29.9 -0.7 49 207-255 63-116 (169)
186 PRK11088 rrmA 23S rRNA methylt 25.2 46 0.00099 29.9 1.9 25 210-234 3-27 (272)
187 PF04216 FdhE: Protein involve 24.5 9.4 0.0002 35.1 -2.8 48 208-255 171-220 (290)
188 KOG2979 Protein involved in DN 24.4 40 0.00087 30.7 1.3 43 208-252 175-219 (262)
189 PF14311 DUF4379: Domain of un 24.3 43 0.00092 22.7 1.2 22 230-252 34-55 (55)
190 PHA02688 ORF059 IMV protein VP 24.2 93 0.002 29.3 3.7 16 58-73 306-321 (323)
191 PF10083 DUF2321: Uncharacteri 24.2 43 0.00093 28.3 1.3 50 213-265 8-58 (158)
192 PF10146 zf-C4H2: Zinc finger- 24.0 53 0.0012 29.4 2.0 25 235-259 197-221 (230)
193 PF11118 DUF2627: Protein of u 23.7 2.5E+02 0.0054 20.9 5.1 30 48-81 28-59 (77)
194 PRK14584 hmsS hemin storage sy 23.7 2.2E+02 0.0049 23.9 5.5 50 40-89 30-90 (153)
195 PF02318 FYVE_2: FYVE-type zin 23.6 52 0.0011 26.0 1.7 45 208-254 53-102 (118)
196 PF07599 DUF1563: Protein of u 23.5 1.1E+02 0.0024 19.6 2.8 19 65-83 4-22 (43)
197 PF10852 DUF2651: Protein of u 23.3 1.5E+02 0.0033 22.3 4.0 29 47-75 38-67 (82)
198 PF04156 IncA: IncA protein; 23.2 1.5E+02 0.0034 24.9 4.7 34 48-81 24-62 (191)
199 cd00350 rubredoxin_like Rubred 23.0 47 0.001 20.2 1.0 10 245-254 16-25 (33)
200 PF09723 Zn-ribbon_8: Zinc rib 22.8 25 0.00054 22.7 -0.2 26 227-254 8-34 (42)
201 PF11125 DUF2830: Protein of u 22.7 2.5E+02 0.0055 19.0 4.8 21 56-76 29-49 (54)
202 PF06667 PspB: Phage shock pro 22.7 1.4E+02 0.003 22.1 3.6 14 39-52 3-16 (75)
203 KOG4451 Uncharacterized conser 22.5 52 0.0011 29.6 1.6 25 234-258 251-275 (286)
204 KOG2071 mRNA cleavage and poly 22.3 42 0.00092 34.0 1.1 36 207-243 511-557 (579)
205 PF12113 SVM_signal: SVM prote 22.3 59 0.0013 20.2 1.4 18 40-57 13-30 (33)
206 PF09943 DUF2175: Uncharacteri 21.8 75 0.0016 24.9 2.2 33 211-244 4-36 (101)
207 PLN02248 cellulose synthase-li 21.8 75 0.0016 34.9 2.9 33 227-259 145-179 (1135)
208 KOG1512 PHD Zn-finger protein 21.7 41 0.00088 31.3 0.8 33 208-240 313-345 (381)
209 PF03213 Pox_P35: Poxvirus P35 21.5 1.1E+02 0.0024 28.8 3.6 15 58-72 308-322 (325)
210 PLN02195 cellulose synthase A 21.5 1.2E+02 0.0025 32.9 4.2 49 209-257 6-59 (977)
211 PF11023 DUF2614: Protein of u 21.1 30 0.00064 27.6 -0.2 19 242-260 81-99 (114)
212 PF07895 DUF1673: Protein of u 21.1 1.8E+02 0.0039 25.4 4.7 30 55-85 147-176 (205)
213 KOG2169 Zn-finger transcriptio 20.7 50 0.0011 34.0 1.3 41 210-257 307-356 (636)
214 KOG2113 Predicted RNA binding 20.7 71 0.0015 30.1 2.2 44 209-257 343-387 (394)
215 PHA00027 lys lysis protein 20.5 3E+02 0.0065 19.0 4.7 20 56-75 33-52 (58)
216 PF03303 WTF: WTF protein; In 20.2 2E+02 0.0044 25.9 4.8 25 59-83 119-149 (247)
217 PF10497 zf-4CXXC_R1: Zinc-fin 20.1 1.1E+02 0.0025 23.8 2.9 24 231-254 37-69 (105)
No 1
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.62 E-value=3.7e-16 Score=145.14 Aligned_cols=82 Identities=38% Similarity=0.799 Sum_probs=68.0
Q ss_pred CCCHHHHhhCCCeeeeccCCCCCCCcccCCCCCChhHhhhhhhccccCCCCCCCcccccccccccccCCeeEEeCCCCcc
Q 024005 155 SMSEEEINTLPVHKYKVSGSQSGASSMQLGSSSSPAEQKKLETSISVGNLKTEDELTCTVCLEQVNVGEIVRSLPCLHQF 234 (274)
Q Consensus 155 ~ls~e~I~~Lp~~~~~~~~~~~~~s~~~~~sss~~~~~~~~~~~~~~~~~~~~e~~~C~ICLe~~~~~~~v~~lpCgH~F 234 (274)
.+.++.++.+|..+|+..... +....|+||+|+|..|++++.|||+|.|
T Consensus 206 r~~k~~l~~~p~~~f~~~~~~-------------------------------~~~~~CaIClEdY~~GdklRiLPC~H~F 254 (348)
T KOG4628|consen 206 RLIKRLLKKLPVRTFTKGDDE-------------------------------DATDTCAICLEDYEKGDKLRILPCSHKF 254 (348)
T ss_pred hhHHHHHhhCCcEEecccccc-------------------------------CCCceEEEeecccccCCeeeEecCCCch
Confidence 477888999999999765431 1114899999999999999999999999
Q ss_pred ChhhHHHHHhcCCC-CccccccccCCCCCCCCcc
Q 024005 235 HANCIDPWLRQQGT-CPVCKLRAGSGWHETRQVE 267 (274)
Q Consensus 235 H~~CI~~WL~~~~t-CPlCR~~i~~~~~~~~~~~ 267 (274)
|..||++||.+.++ ||+||+++......+...|
T Consensus 255 H~~CIDpWL~~~r~~CPvCK~di~~~~~~~~~~e 288 (348)
T KOG4628|consen 255 HVNCIDPWLTQTRTFCPVCKRDIRTDSGSEPVSE 288 (348)
T ss_pred hhccchhhHhhcCccCCCCCCcCCCCCCCCCccC
Confidence 99999999988865 9999999987766665555
No 2
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=99.52 E-value=4.7e-15 Score=98.73 Aligned_cols=43 Identities=49% Similarity=1.214 Sum_probs=40.5
Q ss_pred cccccccccccCCeeEEeCCCCccChhhHHHHHhcCCCCcccc
Q 024005 211 TCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQQGTCPVCK 253 (274)
Q Consensus 211 ~C~ICLe~~~~~~~v~~lpCgH~FH~~CI~~WL~~~~tCPlCR 253 (274)
.|+||++++..++.+..++|+|.||.+||.+|++++.+||+||
T Consensus 2 ~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~~~~~~~~CP~CR 44 (44)
T PF13639_consen 2 ECPICLEEFEDGEKVVKLPCGHVFHRSCIKEWLKRNNSCPVCR 44 (44)
T ss_dssp CETTTTCBHHTTSCEEEETTSEEEEHHHHHHHHHHSSB-TTTH
T ss_pred CCcCCChhhcCCCeEEEccCCCeeCHHHHHHHHHhCCcCCccC
Confidence 6999999999899999999999999999999999999999997
No 3
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=99.25 E-value=4.9e-12 Score=93.38 Aligned_cols=45 Identities=38% Similarity=0.902 Sum_probs=36.0
Q ss_pred cccccccccccccC----------CeeEEeCCCCccChhhHHHHHhcCCCCcccc
Q 024005 209 ELTCTVCLEQVNVG----------EIVRSLPCLHQFHANCIDPWLRQQGTCPVCK 253 (274)
Q Consensus 209 ~~~C~ICLe~~~~~----------~~v~~lpCgH~FH~~CI~~WL~~~~tCPlCR 253 (274)
++.|+||++.+... -.+...+|||.||..||.+||+.+.+||+||
T Consensus 19 ~d~C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR 73 (73)
T PF12678_consen 19 DDNCAICREPLEDPCPECQAPQDECPIVWGPCGHIFHFHCISQWLKQNNTCPLCR 73 (73)
T ss_dssp CSBETTTTSBTTSTTCCHHHCTTTS-EEEETTSEEEEHHHHHHHHTTSSB-TTSS
T ss_pred CCcccccChhhhChhhhhcCCccccceEecccCCCEEHHHHHHHHhcCCcCCCCC
Confidence 44599999999322 2455567999999999999999999999997
No 4
>PHA02929 N1R/p28-like protein; Provisional
Probab=99.19 E-value=1.5e-11 Score=109.79 Aligned_cols=51 Identities=37% Similarity=0.769 Sum_probs=41.8
Q ss_pred CcccccccccccccCCe-----eEEeCCCCccChhhHHHHHhcCCCCccccccccC
Q 024005 208 DELTCTVCLEQVNVGEI-----VRSLPCLHQFHANCIDPWLRQQGTCPVCKLRAGS 258 (274)
Q Consensus 208 e~~~C~ICLe~~~~~~~-----v~~lpCgH~FH~~CI~~WL~~~~tCPlCR~~i~~ 258 (274)
.+..|+||++.+..++. ...++|+|.||..||.+|++.+.+||+||..+..
T Consensus 173 ~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~~~~tCPlCR~~~~~ 228 (238)
T PHA02929 173 KDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKKEKNTCPVCRTPFIS 228 (238)
T ss_pred CCCCCccCCcccccCccccccceecCCCCCcccHHHHHHHHhcCCCCCCCCCEeeE
Confidence 45689999999775431 2345699999999999999999999999998764
No 5
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.12 E-value=3e-11 Score=109.46 Aligned_cols=51 Identities=33% Similarity=0.916 Sum_probs=46.2
Q ss_pred CcccccccccccccCCeeEEeCCCCccChhhHHHHHh-cCCCCccccccccC
Q 024005 208 DELTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLR-QQGTCPVCKLRAGS 258 (274)
Q Consensus 208 e~~~C~ICLe~~~~~~~v~~lpCgH~FH~~CI~~WL~-~~~tCPlCR~~i~~ 258 (274)
....|+|||++|..++.++.+||.|.||..|+++|+. -+..||+||..++.
T Consensus 322 ~GveCaICms~fiK~d~~~vlPC~H~FH~~Cv~kW~~~y~~~CPvCrt~iPP 373 (374)
T COG5540 322 KGVECAICMSNFIKNDRLRVLPCDHRFHVGCVDKWLLGYSNKCPVCRTAIPP 373 (374)
T ss_pred CCceEEEEhhhhcccceEEEeccCceechhHHHHHHhhhcccCCccCCCCCC
Confidence 3468999999999999999999999999999999998 46689999998874
No 6
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.11 E-value=3.2e-11 Score=108.75 Aligned_cols=51 Identities=29% Similarity=0.731 Sum_probs=45.4
Q ss_pred CCCcccccccccccccCCeeEEeCCCCccChhhHHHHHhcCCCCccccccccCC
Q 024005 206 TEDELTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQQGTCPVCKLRAGSG 259 (274)
Q Consensus 206 ~~e~~~C~ICLe~~~~~~~v~~lpCgH~FH~~CI~~WL~~~~tCPlCR~~i~~~ 259 (274)
.+...+|.+|||....+ ..+||||+||+.||..|...+..||+||.+...+
T Consensus 236 ~~a~~kC~LCLe~~~~p---SaTpCGHiFCWsCI~~w~~ek~eCPlCR~~~~ps 286 (293)
T KOG0317|consen 236 PEATRKCSLCLENRSNP---SATPCGHIFCWSCILEWCSEKAECPLCREKFQPS 286 (293)
T ss_pred CCCCCceEEEecCCCCC---CcCcCcchHHHHHHHHHHccccCCCcccccCCCc
Confidence 35567999999998766 7899999999999999999999999999988764
No 7
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=99.11 E-value=5.3e-11 Score=102.56 Aligned_cols=50 Identities=32% Similarity=0.705 Sum_probs=41.8
Q ss_pred CCcccccccccccccCCeeEEeCCCCccChhhHHHHHhc----------------CCCCccccccccCC
Q 024005 207 EDELTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQ----------------QGTCPVCKLRAGSG 259 (274)
Q Consensus 207 ~e~~~C~ICLe~~~~~~~v~~lpCgH~FH~~CI~~WL~~----------------~~tCPlCR~~i~~~ 259 (274)
.++.+|+||++.+..+ ..++|||.||+.||.+|+.. ...||+||..+...
T Consensus 16 ~~~~~CpICld~~~dP---VvT~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~~ 81 (193)
T PLN03208 16 GGDFDCNICLDQVRDP---VVTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSEA 81 (193)
T ss_pred CCccCCccCCCcCCCc---EEcCCCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCChh
Confidence 4678999999998765 67889999999999999852 24799999988654
No 8
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=99.10 E-value=4.5e-11 Score=110.82 Aligned_cols=51 Identities=35% Similarity=0.958 Sum_probs=43.0
Q ss_pred CCCccccccccccc-ccCC---------eeEEeCCCCccChhhHHHHHhcCCCCccccccc
Q 024005 206 TEDELTCTVCLEQV-NVGE---------IVRSLPCLHQFHANCIDPWLRQQGTCPVCKLRA 256 (274)
Q Consensus 206 ~~e~~~C~ICLe~~-~~~~---------~v~~lpCgH~FH~~CI~~WL~~~~tCPlCR~~i 256 (274)
..++..|.||++++ ..+. ...+|||||++|-+|++.|++++.+||+||.++
T Consensus 284 ~n~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLpCGHilHl~CLknW~ERqQTCPICr~p~ 344 (491)
T COG5243 284 TNSDRTCTICMDEMFHPDHEPLPRGLDMTPKRLPCGHILHLHCLKNWLERQQTCPICRRPV 344 (491)
T ss_pred cCCCCeEEEecccccCCCCccCcccccCCcccccccceeeHHHHHHHHHhccCCCcccCcc
Confidence 35677999999994 3331 345799999999999999999999999999994
No 9
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=99.01 E-value=1.8e-10 Score=78.59 Aligned_cols=47 Identities=32% Similarity=0.793 Sum_probs=39.7
Q ss_pred cccccccccccccCCeeEEeCCCCc-cChhhHHHHHhcCCCCccccccccC
Q 024005 209 ELTCTVCLEQVNVGEIVRSLPCLHQ-FHANCIDPWLRQQGTCPVCKLRAGS 258 (274)
Q Consensus 209 ~~~C~ICLe~~~~~~~v~~lpCgH~-FH~~CI~~WL~~~~tCPlCR~~i~~ 258 (274)
+..|.||++.... +..+||||. ||..|+.+|++.+..||+||+++..
T Consensus 2 ~~~C~iC~~~~~~---~~~~pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~~ 49 (50)
T PF13920_consen 2 DEECPICFENPRD---VVLLPCGHLCFCEECAERLLKRKKKCPICRQPIES 49 (50)
T ss_dssp HSB-TTTSSSBSS---EEEETTCEEEEEHHHHHHHHHTTSBBTTTTBB-SE
T ss_pred cCCCccCCccCCc---eEEeCCCChHHHHHHhHHhcccCCCCCcCChhhcC
Confidence 4589999998653 588999999 9999999999999999999998753
No 10
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.98 E-value=2.8e-10 Score=99.95 Aligned_cols=53 Identities=26% Similarity=0.583 Sum_probs=43.8
Q ss_pred CCCcccccccccccccCCeeEEeCCCCccChhhHHHHHhcC---CCCccccccccCCCC
Q 024005 206 TEDELTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQQ---GTCPVCKLRAGSGWH 261 (274)
Q Consensus 206 ~~e~~~C~ICLe~~~~~~~v~~lpCgH~FH~~CI~~WL~~~---~tCPlCR~~i~~~~~ 261 (274)
+.....|.|||+.-+.+ +++.|||.||+.||.+||..+ +.||+||..+.....
T Consensus 44 ~~~~FdCNICLd~akdP---VvTlCGHLFCWpClyqWl~~~~~~~~cPVCK~~Vs~~~v 99 (230)
T KOG0823|consen 44 DGGFFDCNICLDLAKDP---VVTLCGHLFCWPCLYQWLQTRPNSKECPVCKAEVSIDTV 99 (230)
T ss_pred CCCceeeeeeccccCCC---EEeecccceehHHHHHHHhhcCCCeeCCccccccccceE
Confidence 35678999999997766 677799999999999999764 468999998876543
No 11
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=98.96 E-value=4.6e-10 Score=72.69 Aligned_cols=39 Identities=38% Similarity=1.009 Sum_probs=33.7
Q ss_pred ccccccccccCCeeEEeCCCCccChhhHHHHHhcCCCCccc
Q 024005 212 CTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQQGTCPVC 252 (274)
Q Consensus 212 C~ICLe~~~~~~~v~~lpCgH~FH~~CI~~WL~~~~tCPlC 252 (274)
|+||++.+.. .+..++|||.||.+||.+|++.+..||+|
T Consensus 1 C~iC~~~~~~--~~~~~~CGH~fC~~C~~~~~~~~~~CP~C 39 (39)
T PF13923_consen 1 CPICLDELRD--PVVVTPCGHSFCKECIEKYLEKNPKCPVC 39 (39)
T ss_dssp ETTTTSB-SS--EEEECTTSEEEEHHHHHHHHHCTSB-TTT
T ss_pred CCCCCCcccC--cCEECCCCCchhHHHHHHHHHCcCCCcCC
Confidence 8999999884 56789999999999999999999999998
No 12
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=98.94 E-value=7.7e-10 Score=72.08 Aligned_cols=44 Identities=45% Similarity=1.078 Sum_probs=36.7
Q ss_pred cccccccccccCCeeEEeCCCCccChhhHHHHHhc-CCCCccccccc
Q 024005 211 TCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQ-QGTCPVCKLRA 256 (274)
Q Consensus 211 ~C~ICLe~~~~~~~v~~lpCgH~FH~~CI~~WL~~-~~tCPlCR~~i 256 (274)
.|+||++.+. +.....+|+|.||..|+..|++. +..||.||..+
T Consensus 1 ~C~iC~~~~~--~~~~~~~C~H~~c~~C~~~~~~~~~~~Cp~C~~~~ 45 (45)
T cd00162 1 ECPICLEEFR--EPVVLLPCGHVFCRSCIDKWLKSGKNTCPLCRTPI 45 (45)
T ss_pred CCCcCchhhh--CceEecCCCChhcHHHHHHHHHhCcCCCCCCCCcC
Confidence 4999999983 44455669999999999999998 77899998753
No 13
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.93 E-value=5.4e-10 Score=94.45 Aligned_cols=53 Identities=28% Similarity=0.643 Sum_probs=44.8
Q ss_pred CCCcccccccccccccCCeeEEeCCCCccChhhHHHHHhcCCCCccccccccCC
Q 024005 206 TEDELTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQQGTCPVCKLRAGSG 259 (274)
Q Consensus 206 ~~e~~~C~ICLe~~~~~~~v~~lpCgH~FH~~CI~~WL~~~~tCPlCR~~i~~~ 259 (274)
.+....|+|||+.+.... ...+.|||+||..||+.-++....||+|+++|..+
T Consensus 128 ~~~~~~CPiCl~~~sek~-~vsTkCGHvFC~~Cik~alk~~~~CP~C~kkIt~k 180 (187)
T KOG0320|consen 128 KEGTYKCPICLDSVSEKV-PVSTKCGHVFCSQCIKDALKNTNKCPTCRKKITHK 180 (187)
T ss_pred cccccCCCceecchhhcc-ccccccchhHHHHHHHHHHHhCCCCCCcccccchh
Confidence 355689999999998442 24578999999999999999999999999988765
No 14
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.81 E-value=1.7e-09 Score=107.61 Aligned_cols=52 Identities=35% Similarity=0.874 Sum_probs=45.3
Q ss_pred CCcccccccccccccCCe--eEEeCCCCccChhhHHHHHhcCCCCccccccccC
Q 024005 207 EDELTCTVCLEQVNVGEI--VRSLPCLHQFHANCIDPWLRQQGTCPVCKLRAGS 258 (274)
Q Consensus 207 ~e~~~C~ICLe~~~~~~~--v~~lpCgH~FH~~CI~~WL~~~~tCPlCR~~i~~ 258 (274)
..+..|+||+|.+..+.. ..++||+|+||..|+..|++++.+||.||..+..
T Consensus 289 ~~~~~C~IC~e~l~~~~~~~~~rL~C~Hifh~~CL~~W~er~qtCP~CR~~~~~ 342 (543)
T KOG0802|consen 289 LSDELCIICLEELHSGHNITPKRLPCGHIFHDSCLRSWFERQQTCPTCRTVLYD 342 (543)
T ss_pred hcCCeeeeechhhccccccccceeecccchHHHHHHHHHHHhCcCCcchhhhhc
Confidence 357799999999988654 5789999999999999999999999999995543
No 15
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=98.77 E-value=3.8e-09 Score=69.68 Aligned_cols=38 Identities=34% Similarity=0.900 Sum_probs=30.2
Q ss_pred ccccccccccCCeeEEeCCCCccChhhHHHHHhcC----CCCccc
Q 024005 212 CTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQQ----GTCPVC 252 (274)
Q Consensus 212 C~ICLe~~~~~~~v~~lpCgH~FH~~CI~~WL~~~----~tCPlC 252 (274)
|+||++.+..+ ..++|||.|+..||.+|.+.. ..||.|
T Consensus 1 CpiC~~~~~~P---v~l~CGH~FC~~Cl~~~~~~~~~~~~~CP~C 42 (42)
T PF15227_consen 1 CPICLDLFKDP---VSLPCGHSFCRSCLERLWKEPSGSGFSCPEC 42 (42)
T ss_dssp ETTTTSB-SSE---EE-SSSSEEEHHHHHHHHCCSSSST---SSS
T ss_pred CCccchhhCCc---cccCCcCHHHHHHHHHHHHccCCcCCCCcCC
Confidence 89999999988 889999999999999999764 369987
No 16
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=98.76 E-value=7.4e-09 Score=73.37 Aligned_cols=46 Identities=26% Similarity=0.463 Sum_probs=41.3
Q ss_pred ccccccccccccCCeeEEeCCCCccChhhHHHHHhcCCCCccccccccC
Q 024005 210 LTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQQGTCPVCKLRAGS 258 (274)
Q Consensus 210 ~~C~ICLe~~~~~~~v~~lpCgH~FH~~CI~~WL~~~~tCPlCR~~i~~ 258 (274)
..|+||.+.+..+ ..++|||.|+..||.+|++.+.+||+|+..+..
T Consensus 2 ~~Cpi~~~~~~~P---v~~~~G~v~~~~~i~~~~~~~~~cP~~~~~~~~ 47 (63)
T smart00504 2 FLCPISLEVMKDP---VILPSGQTYERRAIEKWLLSHGTDPVTGQPLTH 47 (63)
T ss_pred cCCcCCCCcCCCC---EECCCCCEEeHHHHHHHHHHCCCCCCCcCCCCh
Confidence 4799999999876 678999999999999999999999999988754
No 17
>PHA02926 zinc finger-like protein; Provisional
Probab=98.73 E-value=5.4e-09 Score=91.52 Aligned_cols=51 Identities=33% Similarity=0.797 Sum_probs=38.1
Q ss_pred CcccccccccccccC----C-eeEEe-CCCCccChhhHHHHHhcC------CCCccccccccC
Q 024005 208 DELTCTVCLEQVNVG----E-IVRSL-PCLHQFHANCIDPWLRQQ------GTCPVCKLRAGS 258 (274)
Q Consensus 208 e~~~C~ICLe~~~~~----~-~v~~l-pCgH~FH~~CI~~WL~~~------~tCPlCR~~i~~ 258 (274)
.+.+|+||+|..... + ....| +|+|.||..||..|.+.+ .+||+||..+..
T Consensus 169 kE~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~~ 231 (242)
T PHA02926 169 KEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRETGASDNCPICRTRFRN 231 (242)
T ss_pred CCCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhccccCcCCcCCCCcceeee
Confidence 567899999986422 1 12344 599999999999999753 359999997653
No 18
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=98.73 E-value=7.6e-09 Score=77.96 Aligned_cols=51 Identities=27% Similarity=0.664 Sum_probs=38.9
Q ss_pred CcccccccccccccC--------C--eeEEeCCCCccChhhHHHHHhc---CCCCccccccccC
Q 024005 208 DELTCTVCLEQVNVG--------E--IVRSLPCLHQFHANCIDPWLRQ---QGTCPVCKLRAGS 258 (274)
Q Consensus 208 e~~~C~ICLe~~~~~--------~--~v~~lpCgH~FH~~CI~~WL~~---~~tCPlCR~~i~~ 258 (274)
+++.|.||...|... + .+..-.|+|.||..||.+||.+ +.+||+||+...-
T Consensus 20 ~dd~CgICr~~fdg~Cp~Ck~Pgd~Cplv~g~C~H~FH~hCI~kWl~~~~~~~~CPmCR~~w~~ 83 (85)
T PF12861_consen 20 NDDVCGICRMPFDGCCPDCKFPGDDCPLVWGKCSHNFHMHCILKWLSTQSSKGQCPMCRQPWKF 83 (85)
T ss_pred CCCceeeEecccccCCCCccCCCCCCceeeccCccHHHHHHHHHHHccccCCCCCCCcCCeeee
Confidence 366899999988632 1 2333349999999999999986 4689999997653
No 19
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=98.70 E-value=1e-08 Score=68.19 Aligned_cols=44 Identities=25% Similarity=0.677 Sum_probs=38.2
Q ss_pred cccccccccccCCeeEEeCCCCccChhhHHHHHhcCCCCccccc
Q 024005 211 TCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQQGTCPVCKL 254 (274)
Q Consensus 211 ~C~ICLe~~~~~~~v~~lpCgH~FH~~CI~~WL~~~~tCPlCR~ 254 (274)
.|+||++.|........++|||+||..|+.++......||+||+
T Consensus 1 ~C~~C~~~~~~~~~~~l~~CgH~~C~~C~~~~~~~~~~CP~C~k 44 (44)
T PF14634_consen 1 HCNICFEKYSEERRPRLTSCGHIFCEKCLKKLKGKSVKCPICRK 44 (44)
T ss_pred CCcCcCccccCCCCeEEcccCCHHHHHHHHhhcCCCCCCcCCCC
Confidence 49999999965567788999999999999999866778999985
No 20
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=98.67 E-value=1.1e-08 Score=66.57 Aligned_cols=39 Identities=41% Similarity=1.038 Sum_probs=33.8
Q ss_pred ccccccccccCCeeEEeCCCCccChhhHHHHHh--cCCCCccc
Q 024005 212 CTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLR--QQGTCPVC 252 (274)
Q Consensus 212 C~ICLe~~~~~~~v~~lpCgH~FH~~CI~~WL~--~~~tCPlC 252 (274)
|+||++.+..+ ...++|||.||..||.+|++ ....||+|
T Consensus 1 C~iC~~~~~~~--~~~~~C~H~fC~~C~~~~~~~~~~~~CP~C 41 (41)
T PF00097_consen 1 CPICLEPFEDP--VILLPCGHSFCRDCLRKWLENSGSVKCPLC 41 (41)
T ss_dssp ETTTSSBCSSE--EEETTTSEEEEHHHHHHHHHHTSSSBTTTT
T ss_pred CCcCCccccCC--CEEecCCCcchHHHHHHHHHhcCCccCCcC
Confidence 89999998855 35889999999999999998 45579988
No 21
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=98.65 E-value=2.2e-08 Score=62.83 Aligned_cols=38 Identities=45% Similarity=1.160 Sum_probs=32.6
Q ss_pred ccccccccccCCeeEEeCCCCccChhhHHHHHh-cCCCCccc
Q 024005 212 CTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLR-QQGTCPVC 252 (274)
Q Consensus 212 C~ICLe~~~~~~~v~~lpCgH~FH~~CI~~WL~-~~~tCPlC 252 (274)
|+||++.. .....++|+|.||..|++.|++ .+..||.|
T Consensus 1 C~iC~~~~---~~~~~~~C~H~~c~~C~~~~~~~~~~~CP~C 39 (39)
T smart00184 1 CPICLEEL---KDPVVLPCGHTFCRSCIRKWLKSGNNTCPIC 39 (39)
T ss_pred CCcCccCC---CCcEEecCCChHHHHHHHHHHHhCcCCCCCC
Confidence 78999983 3457889999999999999998 66679987
No 22
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.62 E-value=1.9e-08 Score=96.00 Aligned_cols=49 Identities=29% Similarity=0.687 Sum_probs=43.7
Q ss_pred CCcccccccccccccCCeeEEeCCCCccChhhHHHHHhcCCCCccccccccC
Q 024005 207 EDELTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQQGTCPVCKLRAGS 258 (274)
Q Consensus 207 ~e~~~C~ICLe~~~~~~~v~~lpCgH~FH~~CI~~WL~~~~tCPlCR~~i~~ 258 (274)
+....|+||++.+..+ ..++|+|.||..||..|+.....||+||..+..
T Consensus 24 e~~l~C~IC~d~~~~P---vitpCgH~FCs~CI~~~l~~~~~CP~Cr~~~~~ 72 (397)
T TIGR00599 24 DTSLRCHICKDFFDVP---VLTSCSHTFCSLCIRRCLSNQPKCPLCRAEDQE 72 (397)
T ss_pred ccccCCCcCchhhhCc---cCCCCCCchhHHHHHHHHhCCCCCCCCCCcccc
Confidence 5677999999999866 578999999999999999998899999998764
No 23
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.47 E-value=6.6e-08 Score=86.54 Aligned_cols=50 Identities=28% Similarity=0.732 Sum_probs=43.3
Q ss_pred CCcccccccccccccCCeeEEeCCCCccChhhHHH-HHhcCCC-CccccccccCC
Q 024005 207 EDELTCTVCLEQVNVGEIVRSLPCLHQFHANCIDP-WLRQQGT-CPVCKLRAGSG 259 (274)
Q Consensus 207 ~e~~~C~ICLe~~~~~~~v~~lpCgH~FH~~CI~~-WL~~~~t-CPlCR~~i~~~ 259 (274)
+.+.+|.||++..... ..++|||+||..||.. |-+++.. ||+||+....+
T Consensus 213 ~~d~kC~lC~e~~~~p---s~t~CgHlFC~~Cl~~~~t~~k~~~CplCRak~~pk 264 (271)
T COG5574 213 LADYKCFLCLEEPEVP---SCTPCGHLFCLSCLLISWTKKKYEFCPLCRAKVYPK 264 (271)
T ss_pred ccccceeeeecccCCc---ccccccchhhHHHHHHHHHhhccccCchhhhhccch
Confidence 4577999999997766 8899999999999999 9887776 99999987654
No 24
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.45 E-value=4.7e-08 Score=87.62 Aligned_cols=53 Identities=34% Similarity=0.721 Sum_probs=44.0
Q ss_pred CCcccccccccccccCC-------eeEEeCCCCccChhhHHHHH--hcCCCCccccccccCC
Q 024005 207 EDELTCTVCLEQVNVGE-------IVRSLPCLHQFHANCIDPWL--RQQGTCPVCKLRAGSG 259 (274)
Q Consensus 207 ~e~~~C~ICLe~~~~~~-------~v~~lpCgH~FH~~CI~~WL--~~~~tCPlCR~~i~~~ 259 (274)
.++..|+||-..+.... +...|.|+|+||..||+-|- .++.+||.||.++..+
T Consensus 222 l~d~vCaVCg~~~~~s~~eegvienty~LsCnHvFHEfCIrGWcivGKkqtCPYCKekVdl~ 283 (328)
T KOG1734|consen 222 LSDSVCAVCGQQIDVSVDEEGVIENTYKLSCNHVFHEFCIRGWCIVGKKQTCPYCKEKVDLK 283 (328)
T ss_pred CCcchhHhhcchheeecchhhhhhhheeeecccchHHHhhhhheeecCCCCCchHHHHhhHh
Confidence 35668999988887654 67889999999999999995 5678999999887543
No 25
>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]
Probab=98.40 E-value=1.8e-07 Score=69.13 Aligned_cols=47 Identities=30% Similarity=0.639 Sum_probs=34.0
Q ss_pred ccccccccccCCe-eEEeC-CCCccChhhHHHHHhcCCCCccccccccC
Q 024005 212 CTVCLEQVNVGEI-VRSLP-CLHQFHANCIDPWLRQQGTCPVCKLRAGS 258 (274)
Q Consensus 212 C~ICLe~~~~~~~-v~~lp-CgH~FH~~CI~~WL~~~~tCPlCR~~i~~ 258 (274)
|+-|......+++ ..... |.|.||.+||.+||..+..||+||++..-
T Consensus 34 C~eCq~~~~~~~eC~v~wG~CnHaFH~HCI~rWL~Tk~~CPld~q~w~~ 82 (88)
T COG5194 34 CPECQFGMTPGDECPVVWGVCNHAFHDHCIYRWLDTKGVCPLDRQTWVL 82 (88)
T ss_pred CcccccCCCCCCcceEEEEecchHHHHHHHHHHHhhCCCCCCCCceeEE
Confidence 3334443333433 33344 99999999999999999999999997654
No 26
>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]
Probab=98.34 E-value=1.3e-07 Score=87.23 Aligned_cols=50 Identities=32% Similarity=0.759 Sum_probs=45.8
Q ss_pred CCcccccccccccccCCeeEEeCCCCccChhhHHHHHhcCCCCccccccccCC
Q 024005 207 EDELTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQQGTCPVCKLRAGSG 259 (274)
Q Consensus 207 ~e~~~C~ICLe~~~~~~~v~~lpCgH~FH~~CI~~WL~~~~tCPlCR~~i~~~ 259 (274)
++...|.||.|.|..+ .++||+|.||.-||+..|..+..||.|+.++.+.
T Consensus 21 D~lLRC~IC~eyf~ip---~itpCsHtfCSlCIR~~L~~~p~CP~C~~~~~Es 70 (442)
T KOG0287|consen 21 DDLLRCGICFEYFNIP---MITPCSHTFCSLCIRKFLSYKPQCPTCCVTVTES 70 (442)
T ss_pred HHHHHHhHHHHHhcCc---eeccccchHHHHHHHHHhccCCCCCceecccchh
Confidence 4677999999999998 8999999999999999999999999999987654
No 27
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.33 E-value=2.4e-07 Score=89.57 Aligned_cols=51 Identities=25% Similarity=0.551 Sum_probs=41.4
Q ss_pred cccccccccccccCCeeEEeCCCCccChhhHHHHHhcC-----CCCccccccccCCCCC
Q 024005 209 ELTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQQ-----GTCPVCKLRAGSGWHE 262 (274)
Q Consensus 209 ~~~C~ICLe~~~~~~~v~~lpCgH~FH~~CI~~WL~~~-----~tCPlCR~~i~~~~~~ 262 (274)
+..|+|||+....+ ..+.|||+||..||-+.+... ..||+|+..+..+.-.
T Consensus 186 ~~~CPICL~~~~~p---~~t~CGHiFC~~CiLqy~~~s~~~~~~~CPiC~s~I~~kdl~ 241 (513)
T KOG2164|consen 186 DMQCPICLEPPSVP---VRTNCGHIFCGPCILQYWNYSAIKGPCSCPICRSTITLKDLL 241 (513)
T ss_pred CCcCCcccCCCCcc---cccccCceeeHHHHHHHHhhhcccCCccCCchhhhcccccee
Confidence 67899999998766 566699999999999977543 4799999988775433
No 28
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=98.27 E-value=4.9e-07 Score=66.57 Aligned_cols=49 Identities=29% Similarity=0.499 Sum_probs=39.4
Q ss_pred CcccccccccccccCCeeEEeCCCCccChhhHHHHHhc-CCCCccccccccCC
Q 024005 208 DELTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQ-QGTCPVCKLRAGSG 259 (274)
Q Consensus 208 e~~~C~ICLe~~~~~~~v~~lpCgH~FH~~CI~~WL~~-~~tCPlCR~~i~~~ 259 (274)
+...|+||.+-+..+ .++||||.|...||.+|++. +.+||+|+.++...
T Consensus 3 ~~f~CpIt~~lM~dP---Vi~~~G~tyer~~I~~~l~~~~~~~P~t~~~l~~~ 52 (73)
T PF04564_consen 3 DEFLCPITGELMRDP---VILPSGHTYERSAIERWLEQNGGTDPFTRQPLSES 52 (73)
T ss_dssp GGGB-TTTSSB-SSE---EEETTSEEEEHHHHHHHHCTTSSB-TTT-SB-SGG
T ss_pred cccCCcCcCcHhhCc---eeCCcCCEEcHHHHHHHHHcCCCCCCCCCCcCCcc
Confidence 467899999999977 78999999999999999999 88999999888764
No 29
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=98.27 E-value=5.9e-07 Score=61.18 Aligned_cols=42 Identities=26% Similarity=0.772 Sum_probs=32.8
Q ss_pred cccccccccccCCeeEEeCCC-----CccChhhHHHHHhcC--CCCcccc
Q 024005 211 TCTVCLEQVNVGEIVRSLPCL-----HQFHANCIDPWLRQQ--GTCPVCK 253 (274)
Q Consensus 211 ~C~ICLe~~~~~~~v~~lpCg-----H~FH~~CI~~WL~~~--~tCPlCR 253 (274)
.|.||++ ...++.....||. |.+|..|+.+|+..+ .+||+|+
T Consensus 1 ~CrIC~~-~~~~~~~l~~PC~C~G~~~~vH~~Cl~~W~~~~~~~~C~iC~ 49 (49)
T smart00744 1 ICRICHD-EGDEGDPLVSPCRCKGSLKYVHQECLERWINESGNKTCEICK 49 (49)
T ss_pred CccCCCC-CCCCCCeeEeccccCCchhHHHHHHHHHHHHHcCCCcCCCCC
Confidence 3899999 3334455688974 899999999999654 4899995
No 30
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=98.23 E-value=6.9e-07 Score=85.15 Aligned_cols=49 Identities=33% Similarity=0.856 Sum_probs=40.7
Q ss_pred CCcccccccccccccCC-eeEEeCCCCccChhhHHHHHhcCCCCcccccccc
Q 024005 207 EDELTCTVCLEQVNVGE-IVRSLPCLHQFHANCIDPWLRQQGTCPVCKLRAG 257 (274)
Q Consensus 207 ~e~~~C~ICLe~~~~~~-~v~~lpCgH~FH~~CI~~WL~~~~tCPlCR~~i~ 257 (274)
.+..+|++|||.+...- .+....|.|.||..|+.+| ...+||+||....
T Consensus 173 tELPTCpVCLERMD~s~~gi~t~~c~Hsfh~~cl~~w--~~~scpvcR~~q~ 222 (493)
T KOG0804|consen 173 TELPTCPVCLERMDSSTTGILTILCNHSFHCSCLMKW--WDSSCPVCRYCQS 222 (493)
T ss_pred ccCCCcchhHhhcCccccceeeeecccccchHHHhhc--ccCcChhhhhhcC
Confidence 46779999999998553 4556669999999999999 6789999998655
No 31
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=98.21 E-value=9.1e-07 Score=58.61 Aligned_cols=38 Identities=29% Similarity=0.725 Sum_probs=22.3
Q ss_pred ccccccccccC-CeeEEeCCCCccChhhHHHHHhcC----CCCc
Q 024005 212 CTVCLEQVNVG-EIVRSLPCLHQFHANCIDPWLRQQ----GTCP 250 (274)
Q Consensus 212 C~ICLe~~~~~-~~v~~lpCgH~FH~~CI~~WL~~~----~tCP 250 (274)
|+||.| +... +.-..|+|||.|+.+||.+|++++ ..||
T Consensus 1 CpIc~e-~~~~~n~P~~L~CGH~~c~~cl~~l~~~~~~~~~kCP 43 (43)
T PF13445_consen 1 CPICKE-FSTEENPPMVLPCGHVFCKDCLQKLSKKSDRNRFKCP 43 (43)
T ss_dssp -TTT-----TTSS-EEE-SSS-EEEHHHHHHHHHH-S-S-B--T
T ss_pred CCcccc-ccCCCCCCEEEeCccHHHHHHHHHHHhcCCCCeeeCc
Confidence 899999 7543 345779999999999999999854 2576
No 32
>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.20 E-value=3.6e-07 Score=67.02 Aligned_cols=49 Identities=37% Similarity=0.794 Sum_probs=36.3
Q ss_pred cccccccccccccC--------Ce-eEEeC-CCCccChhhHHHHHhc---CCCCcccccccc
Q 024005 209 ELTCTVCLEQVNVG--------EI-VRSLP-CLHQFHANCIDPWLRQ---QGTCPVCKLRAG 257 (274)
Q Consensus 209 ~~~C~ICLe~~~~~--------~~-v~~lp-CgH~FH~~CI~~WL~~---~~tCPlCR~~i~ 257 (274)
+++|.||...|... +. ...+. |.|.||..||.+|+.. +..||.||+...
T Consensus 20 ~e~CGiCRm~Fdg~Cp~Ck~PgDdCPLv~G~C~h~fh~hCI~~wl~~~tsq~~CPmcRq~~~ 81 (84)
T KOG1493|consen 20 DETCGICRMPFDGCCPDCKLPGDDCPLVWGYCLHAFHAHCILKWLNTPTSQGQCPMCRQTWQ 81 (84)
T ss_pred CCccceEecccCCcCCCCcCCCCCCccHHHHHHHHHHHHHHHHHhcCccccccCCcchheeE
Confidence 34899999998643 21 11233 8899999999999964 457999999764
No 33
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=98.17 E-value=6.8e-07 Score=81.06 Aligned_cols=50 Identities=28% Similarity=0.617 Sum_probs=44.6
Q ss_pred CCcccccccccccccCCeeEEeCCCCccChhhHHHHHhcCCCCccccccccCC
Q 024005 207 EDELTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQQGTCPVCKLRAGSG 259 (274)
Q Consensus 207 ~e~~~C~ICLe~~~~~~~v~~lpCgH~FH~~CI~~WL~~~~tCPlCR~~i~~~ 259 (274)
+.-+.|-||-+.+..+ ..++|||.||.-||...|..+..||+||.+....
T Consensus 23 Ds~lrC~IC~~~i~ip---~~TtCgHtFCslCIR~hL~~qp~CP~Cr~~~~es 72 (391)
T COG5432 23 DSMLRCRICDCRISIP---CETTCGHTFCSLCIRRHLGTQPFCPVCREDPCES 72 (391)
T ss_pred hhHHHhhhhhheeecc---eecccccchhHHHHHHHhcCCCCCccccccHHhh
Confidence 3456899999999988 7889999999999999999999999999977543
No 34
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.11 E-value=1.8e-06 Score=79.67 Aligned_cols=51 Identities=22% Similarity=0.504 Sum_probs=37.6
Q ss_pred cccccccccc-cccCC-eeEEeCCCCccChhhHHHHH-hcCCCCccccccccCC
Q 024005 209 ELTCTVCLEQ-VNVGE-IVRSLPCLHQFHANCIDPWL-RQQGTCPVCKLRAGSG 259 (274)
Q Consensus 209 ~~~C~ICLe~-~~~~~-~v~~lpCgH~FH~~CI~~WL-~~~~tCPlCR~~i~~~ 259 (274)
+..|+||..+ +..++ .+..-+|||.||..|++..+ .....||.|+..+..+
T Consensus 3 ~~~CP~Ck~~~y~np~~kl~i~~CGH~~C~sCv~~l~~~~~~~CP~C~~~lrk~ 56 (309)
T TIGR00570 3 DQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGSGSCPECDTPLRKN 56 (309)
T ss_pred CCCCCcCCCCCccCcccccccCCCCCcccHHHHHHHhcCCCCCCCCCCCccchh
Confidence 4589999996 33343 22333799999999999955 4456899999887654
No 35
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.09 E-value=1.1e-06 Score=78.04 Aligned_cols=45 Identities=38% Similarity=0.812 Sum_probs=40.3
Q ss_pred CCcccccccccccccCCeeEEeCCCCccChhhHHHHHhcCCCCccccc
Q 024005 207 EDELTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQQGTCPVCKL 254 (274)
Q Consensus 207 ~e~~~C~ICLe~~~~~~~v~~lpCgH~FH~~CI~~WL~~~~tCPlCR~ 254 (274)
+++..|+||++.|..+ ..+||+|.||..|+..+......||.||.
T Consensus 11 ~~~~~C~iC~~~~~~p---~~l~C~H~~c~~C~~~~~~~~~~Cp~cr~ 55 (386)
T KOG2177|consen 11 QEELTCPICLEYFREP---VLLPCGHNFCRACLTRSWEGPLSCPVCRP 55 (386)
T ss_pred cccccChhhHHHhhcC---ccccccchHhHHHHHHhcCCCcCCcccCC
Confidence 5778999999999987 88999999999999999885568999993
No 36
>KOG2930 consensus SCF ubiquitin ligase, Rbx1 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.09 E-value=1.7e-06 Score=67.09 Aligned_cols=51 Identities=25% Similarity=0.615 Sum_probs=38.8
Q ss_pred CCCccccccccccc-------------ccCCeeEEeC-CCCccChhhHHHHHhcCCCCccccccc
Q 024005 206 TEDELTCTVCLEQV-------------NVGEIVRSLP-CLHQFHANCIDPWLRQQGTCPVCKLRA 256 (274)
Q Consensus 206 ~~e~~~C~ICLe~~-------------~~~~~v~~lp-CgH~FH~~CI~~WL~~~~tCPlCR~~i 256 (274)
+...+.|+||...+ ..++...... |.|.||..||.+||+++..||+|.+.-
T Consensus 43 Di~vDnCAICRnHIMd~CieCQa~~~~~~~EC~VaWG~CNHaFH~hCisrWlktr~vCPLdn~eW 107 (114)
T KOG2930|consen 43 DIVVDNCAICRNHIMDLCIECQANQSATSEECTVAWGVCNHAFHFHCISRWLKTRNVCPLDNKEW 107 (114)
T ss_pred eeeechhHHHHHHHHHHHHhhccCCCCCCCceEEEeeecchHHHHHHHHHHHhhcCcCCCcCcce
Confidence 34667899985432 2334455566 999999999999999999999997643
No 37
>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.05 E-value=1.5e-06 Score=83.74 Aligned_cols=52 Identities=25% Similarity=0.721 Sum_probs=40.0
Q ss_pred CCcccccccccccccC---C-----------eeEEeCCCCccChhhHHHHHhc-CCCCccccccccC
Q 024005 207 EDELTCTVCLEQVNVG---E-----------IVRSLPCLHQFHANCIDPWLRQ-QGTCPVCKLRAGS 258 (274)
Q Consensus 207 ~e~~~C~ICLe~~~~~---~-----------~v~~lpCgH~FH~~CI~~WL~~-~~tCPlCR~~i~~ 258 (274)
+....|+||+..+.-. . .-..+||.|+||..|+.+|... +-.||+||.+++.
T Consensus 569 ~~t~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tPC~HifH~~CL~~WMd~ykl~CPvCR~pLPp 635 (636)
T KOG0828|consen 569 RRTNDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTPCHHIFHRQCLLQWMDTYKLICPVCRCPLPP 635 (636)
T ss_pred hccccceEeccccceeeccCcchhhhhhhhccccccchHHHHHHHHHHHHHhhhcccCCccCCCCCC
Confidence 3455799999886322 1 1235699999999999999984 5589999998874
No 38
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=98.03 E-value=1.1e-06 Score=64.34 Aligned_cols=50 Identities=32% Similarity=0.732 Sum_probs=24.8
Q ss_pred ccccccccccc-cCCe--eEEe--CCCCccChhhHHHHHhc---C--------CCCccccccccCC
Q 024005 210 LTCTVCLEQVN-VGEI--VRSL--PCLHQFHANCIDPWLRQ---Q--------GTCPVCKLRAGSG 259 (274)
Q Consensus 210 ~~C~ICLe~~~-~~~~--v~~l--pCgH~FH~~CI~~WL~~---~--------~tCPlCR~~i~~~ 259 (274)
..|.||.+... .++. +..- .|+..||..|+.+||.. . ++||.|+.++.-+
T Consensus 3 ~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i~~~ 68 (70)
T PF11793_consen 3 LECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPISWS 68 (70)
T ss_dssp -S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEEEGG
T ss_pred CCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCeeeEe
Confidence 47999999876 3221 2222 48999999999999963 1 2599999988654
No 39
>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.96 E-value=4.7e-06 Score=77.69 Aligned_cols=55 Identities=24% Similarity=0.514 Sum_probs=43.9
Q ss_pred CCcccccccccccccCCeeEEeCCCCc-cChhhHHHHHhcCCCCccccccccCCCCCCC
Q 024005 207 EDELTCTVCLEQVNVGEIVRSLPCLHQ-FHANCIDPWLRQQGTCPVCKLRAGSGWHETR 264 (274)
Q Consensus 207 ~e~~~C~ICLe~~~~~~~v~~lpCgH~-FH~~CI~~WL~~~~tCPlCR~~i~~~~~~~~ 264 (274)
+...+|.|||.+.... ..|||.|. .|..|.+.---+++.||+||+++..--.--.
T Consensus 288 ~~gkeCVIClse~rdt---~vLPCRHLCLCs~Ca~~Lr~q~n~CPICRqpi~~ll~i~~ 343 (349)
T KOG4265|consen 288 ESGKECVICLSESRDT---VVLPCRHLCLCSGCAKSLRYQTNNCPICRQPIEELLEIYV 343 (349)
T ss_pred cCCCeeEEEecCCcce---EEecchhhehhHhHHHHHHHhhcCCCccccchHhhheecc
Confidence 5578999999996655 89999994 6999998865567889999999876544333
No 40
>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=97.94 E-value=2.3e-06 Score=87.60 Aligned_cols=51 Identities=24% Similarity=0.770 Sum_probs=37.8
Q ss_pred CCcccccccccccc-cCC---eeEEeCCCCccChhhHHHHHhc--CCCCcccccccc
Q 024005 207 EDELTCTVCLEQVN-VGE---IVRSLPCLHQFHANCIDPWLRQ--QGTCPVCKLRAG 257 (274)
Q Consensus 207 ~e~~~C~ICLe~~~-~~~---~v~~lpCgH~FH~~CI~~WL~~--~~tCPlCR~~i~ 257 (274)
+.-.+|+||..-+. ... .-++-.|.|.||..|+.+|++. +++||+||..++
T Consensus 1467 sG~eECaICYsvL~~vdr~lPskrC~TCknKFH~~CLyKWf~Ss~~s~CPlCRseit 1523 (1525)
T COG5219 1467 SGHEECAICYSVLDMVDRSLPSKRCATCKNKFHTRCLYKWFASSARSNCPLCRSEIT 1523 (1525)
T ss_pred CCcchhhHHHHHHHHHhccCCccccchhhhhhhHHHHHHHHHhcCCCCCCccccccc
Confidence 55678999987765 221 1123338999999999999986 458999997764
No 41
>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.89 E-value=1.5e-06 Score=80.67 Aligned_cols=57 Identities=26% Similarity=0.558 Sum_probs=46.0
Q ss_pred CCcccccccccccccCCeeEEeC-CCCccChhhHHHHHhc-CCCCccccccccCCCCCCCCc
Q 024005 207 EDELTCTVCLEQVNVGEIVRSLP-CLHQFHANCIDPWLRQ-QGTCPVCKLRAGSGWHETRQV 266 (274)
Q Consensus 207 ~e~~~C~ICLe~~~~~~~v~~lp-CgH~FH~~CI~~WL~~-~~tCPlCR~~i~~~~~~~~~~ 266 (274)
..+..|+|||+.++.. +..+ |+|-||.+||..-++. +++||.||+.+.++..=...+
T Consensus 41 ~~~v~c~icl~llk~t---mttkeClhrfc~~ci~~a~r~gn~ecptcRk~l~SkrsLr~Dp 99 (381)
T KOG0311|consen 41 DIQVICPICLSLLKKT---MTTKECLHRFCFDCIWKALRSGNNECPTCRKKLVSKRSLRIDP 99 (381)
T ss_pred hhhhccHHHHHHHHhh---cccHHHHHHHHHHHHHHHHHhcCCCCchHHhhccccccCCCCc
Confidence 4567899999999866 5566 9999999999988865 668999999998876544433
No 42
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=97.85 E-value=3.4e-06 Score=85.01 Aligned_cols=51 Identities=29% Similarity=0.498 Sum_probs=44.7
Q ss_pred CCcccccccccccccCCeeEEeCCCCccChhhHHHHHhcCCCCcccccccc
Q 024005 207 EDELTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQQGTCPVCKLRAG 257 (274)
Q Consensus 207 ~e~~~C~ICLe~~~~~~~v~~lpCgH~FH~~CI~~WL~~~~tCPlCR~~i~ 257 (274)
.....|++|+..+..+......+|+|+||..||..|-+...+||+||..+.
T Consensus 121 ~~~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~sWsR~aqTCPiDR~EF~ 171 (1134)
T KOG0825|consen 121 HVENQCPNCLKSCNDQLEESEKHTAHYFCEECVGSWSRCAQTCPVDRGEFG 171 (1134)
T ss_pred hhhhhhhHHHHHHHHHhhccccccccccHHHHhhhhhhhcccCchhhhhhh
Confidence 456689999999987766677789999999999999999999999998664
No 43
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.79 E-value=9.2e-06 Score=76.34 Aligned_cols=47 Identities=23% Similarity=0.832 Sum_probs=37.8
Q ss_pred cccccccccccCCeeEEeC-CCCccChhhHHHHHhc---CCCCcccccccc
Q 024005 211 TCTVCLEQVNVGEIVRSLP-CLHQFHANCIDPWLRQ---QGTCPVCKLRAG 257 (274)
Q Consensus 211 ~C~ICLe~~~~~~~v~~lp-CgH~FH~~CI~~WL~~---~~tCPlCR~~i~ 257 (274)
.|.||.+-+.....+..+. |||+||..|+.+|+.. +.+||+||-.++
T Consensus 6 ~C~Ic~d~~p~~~~l~~i~~cGhifh~~cl~qwfe~~Ps~R~cpic~ik~~ 56 (465)
T KOG0827|consen 6 ECHICIDGRPNDHELGPIGTCGHIFHTTCLTQWFEGDPSNRGCPICQIKLQ 56 (465)
T ss_pred eeeEeccCCccccccccccchhhHHHHHHHHHHHccCCccCCCCceeeccc
Confidence 6999966666666666666 9999999999999976 358999995444
No 44
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B.
Probab=97.68 E-value=9e-06 Score=58.04 Aligned_cols=48 Identities=29% Similarity=0.628 Sum_probs=24.7
Q ss_pred CcccccccccccccCCeeEEeCCCCccChhhHHHHHhcCCCCccccccccCC
Q 024005 208 DELTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQQGTCPVCKLRAGSG 259 (274)
Q Consensus 208 e~~~C~ICLe~~~~~~~v~~lpCgH~FH~~CI~~WL~~~~tCPlCR~~i~~~ 259 (274)
+...|++|.+-+..+ +....|.|.||..||..-+. ..||+|+.+.-.+
T Consensus 6 ~lLrCs~C~~~l~~p--v~l~~CeH~fCs~Ci~~~~~--~~CPvC~~Paw~q 53 (65)
T PF14835_consen 6 ELLRCSICFDILKEP--VCLGGCEHIFCSSCIRDCIG--SECPVCHTPAWIQ 53 (65)
T ss_dssp HTTS-SSS-S--SS---B---SSS--B-TTTGGGGTT--TB-SSS--B-S-S
T ss_pred HhcCCcHHHHHhcCC--ceeccCccHHHHHHhHHhcC--CCCCCcCChHHHH
Confidence 456899999998854 55566999999999987444 4599999887544
No 45
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.64 E-value=3.1e-05 Score=73.31 Aligned_cols=50 Identities=34% Similarity=0.796 Sum_probs=38.4
Q ss_pred CcccccccccccccCC--eeEEeCCCCccChhhHHHHHhc--CCCCcccccccc
Q 024005 208 DELTCTVCLEQVNVGE--IVRSLPCLHQFHANCIDPWLRQ--QGTCPVCKLRAG 257 (274)
Q Consensus 208 e~~~C~ICLe~~~~~~--~v~~lpCgH~FH~~CI~~WL~~--~~tCPlCR~~i~ 257 (274)
...+|+||++.+.-.- .+..+.|||.|..+||++||.+ ...||.|+.+..
T Consensus 3 ~g~tcpiclds~~~~g~hr~vsl~cghlFgs~cie~wl~k~~~~~cp~c~~kat 56 (463)
T KOG1645|consen 3 CGTTCPICLDSYTTAGNHRIVSLQCGHLFGSQCIEKWLGKKTKMQCPLCSGKAT 56 (463)
T ss_pred ccccCceeeeeeeecCceEEeeecccccccHHHHHHHHhhhhhhhCcccCChhH
Confidence 3458999999997443 3445669999999999999963 236999977553
No 46
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.60 E-value=3.3e-05 Score=72.70 Aligned_cols=53 Identities=34% Similarity=0.794 Sum_probs=39.5
Q ss_pred CCcccccccccccccCC----eeEEeC-CCCccChhhHHHHH--hc-----CCCCccccccccCC
Q 024005 207 EDELTCTVCLEQVNVGE----IVRSLP-CLHQFHANCIDPWL--RQ-----QGTCPVCKLRAGSG 259 (274)
Q Consensus 207 ~e~~~C~ICLe~~~~~~----~v~~lp-CgH~FH~~CI~~WL--~~-----~~tCPlCR~~i~~~ 259 (274)
..+.+|.||++...... ...++| |.|.||..||+.|- .+ .+.||.||......
T Consensus 159 s~~k~CGICme~i~ek~~~~~rfgilpnC~H~~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s~~v 223 (344)
T KOG1039|consen 159 SSEKECGICMETINEKAASERRFGILPNCNHSFCLNCIRKWRQATQFESKTSKSCPFCRVPSSFV 223 (344)
T ss_pred cccccceehhhhccccchhhhhcccCCCcchhhhhcHhHhhhhhhccccccccCCCcccCccccc
Confidence 45779999999976432 123446 99999999999997 34 46799999866443
No 47
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.59 E-value=2.7e-05 Score=71.16 Aligned_cols=51 Identities=27% Similarity=0.572 Sum_probs=42.0
Q ss_pred cccccccccccccCCeeEEeCCCCccChhhHHHHHhcC-CCCccccccccCCCCC
Q 024005 209 ELTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQQ-GTCPVCKLRAGSGWHE 262 (274)
Q Consensus 209 ~~~C~ICLe~~~~~~~v~~lpCgH~FH~~CI~~WL~~~-~tCPlCR~~i~~~~~~ 262 (274)
...|+||+.....+ ..++|+|.||.-||+--.+.. .+|++||+++++..-.
T Consensus 7 ~~eC~IC~nt~n~P---v~l~C~HkFCyiCiKGsy~ndk~~CavCR~pids~i~~ 58 (324)
T KOG0824|consen 7 KKECLICYNTGNCP---VNLYCFHKFCYICIKGSYKNDKKTCAVCRFPIDSTIDF 58 (324)
T ss_pred CCcceeeeccCCcC---ccccccchhhhhhhcchhhcCCCCCceecCCCCcchhc
Confidence 34799999997766 789999999999999877664 4699999999876433
No 48
>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=97.51 E-value=2.3e-05 Score=71.52 Aligned_cols=52 Identities=25% Similarity=0.581 Sum_probs=43.6
Q ss_pred CcccccccccccccCCeeEEeCCCCccChhhHHHHHh-----------------------cCCCCccccccccCC
Q 024005 208 DELTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLR-----------------------QQGTCPVCKLRAGSG 259 (274)
Q Consensus 208 e~~~C~ICLe~~~~~~~v~~lpCgH~FH~~CI~~WL~-----------------------~~~tCPlCR~~i~~~ 259 (274)
....|.|||--|..++...+++|-|+||..|+.++|. .+..||+||..|...
T Consensus 114 p~gqCvICLygfa~~~~ft~T~C~Hy~H~~ClaRyl~~~~~~lrqe~q~~~~~~qh~~~~~eavcpVcre~i~~e 188 (368)
T KOG4445|consen 114 PNGQCVICLYGFASSPAFTVTACDHYMHFACLARYLTECLTGLRQEIQDAQKERQHMKEQVEAVCPVCRERIKIE 188 (368)
T ss_pred CCCceEEEEEeecCCCceeeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhHhhhhcccc
Confidence 3457999999999999999999999999999998873 123599999988653
No 49
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=97.42 E-value=3.7e-05 Score=77.76 Aligned_cols=50 Identities=26% Similarity=0.566 Sum_probs=41.0
Q ss_pred CcccccccccccccCCeeEEeCCCCccChhhHHHHHh-cCCCCccccccccCCC
Q 024005 208 DELTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLR-QQGTCPVCKLRAGSGW 260 (274)
Q Consensus 208 e~~~C~ICLe~~~~~~~v~~lpCgH~FH~~CI~~WL~-~~~tCPlCR~~i~~~~ 260 (274)
.-.+|+.|-..++.. .+..|+|.||..||..-+. ++..||.|...++.+.
T Consensus 642 ~~LkCs~Cn~R~Kd~---vI~kC~H~FC~~Cvq~r~etRqRKCP~Cn~aFganD 692 (698)
T KOG0978|consen 642 ELLKCSVCNTRWKDA---VITKCGHVFCEECVQTRYETRQRKCPKCNAAFGAND 692 (698)
T ss_pred hceeCCCccCchhhH---HHHhcchHHHHHHHHHHHHHhcCCCCCCCCCCCccc
Confidence 456999999877754 5667999999999999885 5678999999887653
No 50
>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.41 E-value=0.00011 Score=70.42 Aligned_cols=49 Identities=31% Similarity=0.669 Sum_probs=43.7
Q ss_pred CCcccccccccccccCCeeEEeCCCCccChhhHHHHHhcCCCCccccccccC
Q 024005 207 EDELTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQQGTCPVCKLRAGS 258 (274)
Q Consensus 207 ~e~~~C~ICLe~~~~~~~v~~lpCgH~FH~~CI~~WL~~~~tCPlCR~~i~~ 258 (274)
..+..|.||+..+..+ +.+||||.||..||++-+.....||.||..+.+
T Consensus 82 ~sef~c~vc~~~l~~p---v~tpcghs~c~~Cl~r~ld~~~~cp~Cr~~l~e 130 (398)
T KOG4159|consen 82 RSEFECCVCSRALYPP---VVTPCGHSFCLECLDRSLDQETECPLCRDELVE 130 (398)
T ss_pred cchhhhhhhHhhcCCC---ccccccccccHHHHHHHhccCCCCccccccccc
Confidence 5678999999998877 778999999999999988888899999998875
No 51
>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.37 E-value=4.6e-05 Score=52.54 Aligned_cols=46 Identities=24% Similarity=0.503 Sum_probs=35.2
Q ss_pred ccccccccccccCCeeEEeCCCCc-cChhhHHHHHh-cCCCCccccccccC
Q 024005 210 LTCTVCLEQVNVGEIVRSLPCLHQ-FHANCIDPWLR-QQGTCPVCKLRAGS 258 (274)
Q Consensus 210 ~~C~ICLe~~~~~~~v~~lpCgH~-FH~~CI~~WL~-~~~tCPlCR~~i~~ 258 (274)
++|.||+|.-... ....|||. .|..|-.+-++ .+..||+||.++..
T Consensus 8 dECTICye~pvds---VlYtCGHMCmCy~Cg~rl~~~~~g~CPiCRapi~d 55 (62)
T KOG4172|consen 8 DECTICYEHPVDS---VLYTCGHMCMCYACGLRLKKALHGCCPICRAPIKD 55 (62)
T ss_pred cceeeeccCcchH---HHHHcchHHhHHHHHHHHHHccCCcCcchhhHHHH
Confidence 5899999986654 45569994 68899666444 68899999998753
No 52
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=97.14 E-value=0.00017 Score=68.06 Aligned_cols=51 Identities=37% Similarity=0.877 Sum_probs=41.4
Q ss_pred CCccccccccccccc-CCeeEEeCCCCccChhhHHHHHhcCC--CCcccccccc
Q 024005 207 EDELTCTVCLEQVNV-GEIVRSLPCLHQFHANCIDPWLRQQG--TCPVCKLRAG 257 (274)
Q Consensus 207 ~e~~~C~ICLe~~~~-~~~v~~lpCgH~FH~~CI~~WL~~~~--tCPlCR~~i~ 257 (274)
+-+.-|..|=+.+.. ++.+-.|||.|+||..|+...|.++. +||.||+-..
T Consensus 363 e~~L~Cg~CGe~~Glk~e~LqALpCsHIfH~rCl~e~L~~n~~rsCP~CrklrS 416 (518)
T KOG1941|consen 363 ETELYCGLCGESIGLKNERLQALPCSHIFHLRCLQEILENNGTRSCPNCRKLRS 416 (518)
T ss_pred HHhhhhhhhhhhhcCCcccccccchhHHHHHHHHHHHHHhCCCCCCccHHHHHh
Confidence 456789999998863 45677899999999999999998765 7999995433
No 53
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=97.10 E-value=0.00017 Score=68.26 Aligned_cols=48 Identities=27% Similarity=0.685 Sum_probs=39.2
Q ss_pred cccccccccccccCCeeEEeCCCCccChhhHHHHHhc--CCCCccccccccCC
Q 024005 209 ELTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQ--QGTCPVCKLRAGSG 259 (274)
Q Consensus 209 ~~~C~ICLe~~~~~~~v~~lpCgH~FH~~CI~~WL~~--~~tCPlCR~~i~~~ 259 (274)
-..|-||-|. ...+.+-||||..|..|+..|-.. ..+||.||..|..-
T Consensus 369 FeLCKICaen---dKdvkIEPCGHLlCt~CLa~WQ~sd~gq~CPFCRcEIKGt 418 (563)
T KOG1785|consen 369 FELCKICAEN---DKDVKIEPCGHLLCTSCLAAWQDSDEGQTCPFCRCEIKGT 418 (563)
T ss_pred HHHHHHhhcc---CCCcccccccchHHHHHHHhhcccCCCCCCCceeeEeccc
Confidence 4579999887 456688999999999999999744 46899999987643
No 54
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C.
Probab=97.03 E-value=0.00039 Score=48.82 Aligned_cols=42 Identities=29% Similarity=0.631 Sum_probs=28.9
Q ss_pred CcccccccccccccCCeeEEeCCCCccChhhHHHHHhc--CCCCcc
Q 024005 208 DELTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQ--QGTCPV 251 (274)
Q Consensus 208 e~~~C~ICLe~~~~~~~v~~lpCgH~FH~~CI~~WL~~--~~tCPl 251 (274)
-...|+|.+..+. +.+....|+|.|-.+.|.+|+++ ...||+
T Consensus 10 ~~~~CPiT~~~~~--~PV~s~~C~H~fek~aI~~~i~~~~~~~CPv 53 (57)
T PF11789_consen 10 ISLKCPITLQPFE--DPVKSKKCGHTFEKEAILQYIQRNGSKRCPV 53 (57)
T ss_dssp --SB-TTTSSB-S--SEEEESSS--EEEHHHHHHHCTTTS-EE-SC
T ss_pred eccCCCCcCChhh--CCcCcCCCCCeecHHHHHHHHHhcCCCCCCC
Confidence 4568999999988 55777789999999999999954 346998
No 55
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=96.95 E-value=0.00037 Score=60.35 Aligned_cols=45 Identities=20% Similarity=0.419 Sum_probs=39.2
Q ss_pred CcccccccccccccCCeeEEeCCCCccChhhHHHHHhcCCCCcccccc
Q 024005 208 DELTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQQGTCPVCKLR 255 (274)
Q Consensus 208 e~~~C~ICLe~~~~~~~v~~lpCgH~FH~~CI~~WL~~~~tCPlCR~~ 255 (274)
-...|.||-.+|..+ ..+.|||.||..|...-++...+|-+|-+.
T Consensus 195 IPF~C~iCKkdy~sp---vvt~CGH~FC~~Cai~~y~kg~~C~~Cgk~ 239 (259)
T COG5152 195 IPFLCGICKKDYESP---VVTECGHSFCSLCAIRKYQKGDECGVCGKA 239 (259)
T ss_pred Cceeehhchhhccch---hhhhcchhHHHHHHHHHhccCCcceecchh
Confidence 345899999999988 778899999999998888889999999543
No 56
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]
Probab=96.88 E-value=0.00054 Score=73.29 Aligned_cols=54 Identities=26% Similarity=0.619 Sum_probs=44.1
Q ss_pred CCCCcccccccccccccCCeeEEeCCCCccChhhHHHHHhcC----------CCCccccccccC
Q 024005 205 KTEDELTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQQ----------GTCPVCKLRAGS 258 (274)
Q Consensus 205 ~~~e~~~C~ICLe~~~~~~~v~~lpCgH~FH~~CI~~WL~~~----------~tCPlCR~~i~~ 258 (274)
+.+.++.|.||..+-........|.|+|.||..|.+.-|.+. -.||+|+.++..
T Consensus 3482 kQD~DDmCmICFTE~L~AAP~IqL~C~HiFHlqC~R~vLE~RW~GPRItF~FisCPiC~n~InH 3545 (3738)
T KOG1428|consen 3482 KQDADDMCMICFTEALSAAPAIQLDCSHIFHLQCCRRVLENRWLGPRITFGFISCPICKNKINH 3545 (3738)
T ss_pred hcccCceEEEEehhhhCCCcceecCCccchhHHHHHHHHHhcccCCeeEEeeeecccccchhhh
Confidence 345678999999887777788899999999999998877653 269999998764
No 57
>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]
Probab=96.88 E-value=0.00043 Score=66.54 Aligned_cols=53 Identities=26% Similarity=0.654 Sum_probs=43.8
Q ss_pred CCcccccccccccccCCeeEEeCCCCccChhhHHHHHhcCCCCccccccccCCCC
Q 024005 207 EDELTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQQGTCPVCKLRAGSGWH 261 (274)
Q Consensus 207 ~e~~~C~ICLe~~~~~~~v~~lpCgH~FH~~CI~~WL~~~~tCPlCR~~i~~~~~ 261 (274)
+++..|+||...+..+ +....|||.||..|+.+|+..+..||.|+..+.....
T Consensus 19 ~~~l~C~~C~~vl~~p--~~~~~cgh~fC~~C~~~~~~~~~~cp~~~~~~~~~~~ 71 (391)
T KOG0297|consen 19 DENLLCPICMSVLRDP--VQTTTCGHRFCAGCLLESLSNHQKCPVCRQELTQAEE 71 (391)
T ss_pred cccccCccccccccCC--CCCCCCCCcccccccchhhccCcCCcccccccchhhc
Confidence 5678999999998866 2225799999999999999999999999887765433
No 58
>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.87 E-value=0.00085 Score=62.76 Aligned_cols=51 Identities=22% Similarity=0.414 Sum_probs=44.2
Q ss_pred CCCCcccccccccccccCCeeEEeCCCCccChhhHHHHHhcCCCCccccccccC
Q 024005 205 KTEDELTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQQGTCPVCKLRAGS 258 (274)
Q Consensus 205 ~~~e~~~C~ICLe~~~~~~~v~~lpCgH~FH~~CI~~WL~~~~tCPlCR~~i~~ 258 (274)
.+.++..|+||...-... ...||+|.-|..||.+.+...+.|=.||.++..
T Consensus 418 p~sEd~lCpICyA~pi~A---vf~PC~H~SC~~CI~qHlmN~k~CFfCktTv~~ 468 (489)
T KOG4692|consen 418 PDSEDNLCPICYAGPINA---VFAPCSHRSCYGCITQHLMNCKRCFFCKTTVID 468 (489)
T ss_pred CCcccccCcceecccchh---hccCCCCchHHHHHHHHHhcCCeeeEecceeee
Confidence 346888999998775444 789999999999999999999999999998874
No 59
>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]
Probab=96.78 E-value=0.00032 Score=64.99 Aligned_cols=49 Identities=27% Similarity=0.676 Sum_probs=40.8
Q ss_pred CcccccccccccccCCeeEEeC-CCCccChhhHHHHHhcCCCCccccccccCC
Q 024005 208 DELTCTVCLEQVNVGEIVRSLP-CLHQFHANCIDPWLRQQGTCPVCKLRAGSG 259 (274)
Q Consensus 208 e~~~C~ICLe~~~~~~~v~~lp-CgH~FH~~CI~~WL~~~~tCPlCR~~i~~~ 259 (274)
.-.+|.+|-..+... .+.. |.|.||..||.+.|..+..||.|...+...
T Consensus 14 ~~itC~LC~GYliDA---TTI~eCLHTFCkSCivk~l~~~~~CP~C~i~ih~t 63 (331)
T KOG2660|consen 14 PHITCRLCGGYLIDA---TTITECLHTFCKSCIVKYLEESKYCPTCDIVIHKT 63 (331)
T ss_pred cceehhhccceeecc---hhHHHHHHHHHHHHHHHHHHHhccCCccceeccCc
Confidence 456899999988855 3444 999999999999999999999998877543
No 60
>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.55 E-value=0.0025 Score=57.86 Aligned_cols=51 Identities=24% Similarity=0.357 Sum_probs=39.7
Q ss_pred CCcccccccccccccCCeeEEeCCCCccChhhHHHHHhc--CCCCccccccccCC
Q 024005 207 EDELTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQ--QGTCPVCKLRAGSG 259 (274)
Q Consensus 207 ~e~~~C~ICLe~~~~~~~v~~lpCgH~FH~~CI~~WL~~--~~tCPlCR~~i~~~ 259 (274)
..+.+|++|-+.-..+ ....+|+|+||..||..-+.. ..+||.|-..+..-
T Consensus 237 t~~~~C~~Cg~~PtiP--~~~~~C~HiyCY~Ci~ts~~~~asf~Cp~Cg~~~~~l 289 (298)
T KOG2879|consen 237 TSDTECPVCGEPPTIP--HVIGKCGHIYCYYCIATSRLWDASFTCPLCGENVEPL 289 (298)
T ss_pred cCCceeeccCCCCCCC--eeeccccceeehhhhhhhhcchhhcccCccCCCCcch
Confidence 4567899999987755 445669999999999886654 46899998877643
No 61
>PF12906 RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A.
Probab=96.55 E-value=0.0017 Score=43.67 Aligned_cols=40 Identities=33% Similarity=0.937 Sum_probs=27.4
Q ss_pred ccccccccccCCeeEEeCCC-----CccChhhHHHHHhc--CCCCccc
Q 024005 212 CTVCLEQVNVGEIVRSLPCL-----HQFHANCIDPWLRQ--QGTCPVC 252 (274)
Q Consensus 212 C~ICLe~~~~~~~v~~lpCg-----H~FH~~CI~~WL~~--~~tCPlC 252 (274)
|-||++.-...+ ....||. ...|.+|+.+|+.. +.+|++|
T Consensus 1 CrIC~~~~~~~~-~li~pC~C~Gs~~~vH~~CL~~W~~~~~~~~C~~C 47 (47)
T PF12906_consen 1 CRICLEGEEEDE-PLISPCRCKGSMKYVHRSCLERWIRESGNRKCEIC 47 (47)
T ss_dssp ETTTTEE-SSSS--EE-SSS-SSCCGSEECCHHHHHHHHHT-SB-TTT
T ss_pred CeEeCCcCCCCC-ceecccccCCCcchhHHHHHHHHHHhcCCCcCCCC
Confidence 789999877655 4567763 37899999999974 5579887
No 62
>KOG0801 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.45 E-value=0.00092 Score=56.20 Aligned_cols=30 Identities=37% Similarity=0.967 Sum_probs=27.7
Q ss_pred CCcccccccccccccCCeeEEeCCCCccCh
Q 024005 207 EDELTCTVCLEQVNVGEIVRSLPCLHQFHA 236 (274)
Q Consensus 207 ~e~~~C~ICLe~~~~~~~v~~lpCgH~FH~ 236 (274)
++.-+|.||||++..++.+.+|||..+||+
T Consensus 175 ddkGECvICLEdL~~GdtIARLPCLCIYHK 204 (205)
T KOG0801|consen 175 DDKGECVICLEDLEAGDTIARLPCLCIYHK 204 (205)
T ss_pred ccCCcEEEEhhhccCCCceeccceEEEeec
Confidence 566789999999999999999999999996
No 63
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.24 E-value=0.0021 Score=58.90 Aligned_cols=48 Identities=19% Similarity=0.343 Sum_probs=41.6
Q ss_pred CcccccccccccccCCeeEEeCCCCccChhhHHHHHhcCCCCccccccccC
Q 024005 208 DELTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQQGTCPVCKLRAGS 258 (274)
Q Consensus 208 e~~~C~ICLe~~~~~~~v~~lpCgH~FH~~CI~~WL~~~~tCPlCR~~i~~ 258 (274)
-...|-||...|..+ +++.|+|+||..|...-+++...|++|-+....
T Consensus 240 ~Pf~c~icr~~f~~p---Vvt~c~h~fc~~ca~~~~qk~~~c~vC~~~t~g 287 (313)
T KOG1813|consen 240 LPFKCFICRKYFYRP---VVTKCGHYFCEVCALKPYQKGEKCYVCSQQTHG 287 (313)
T ss_pred CCccccccccccccc---hhhcCCceeehhhhccccccCCcceeccccccc
Confidence 345799999999988 788899999999999988999999999776544
No 64
>KOG3970 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.21 E-value=0.0034 Score=55.48 Aligned_cols=50 Identities=24% Similarity=0.581 Sum_probs=40.2
Q ss_pred CcccccccccccccCCeeEEeCCCCccChhhHHHHHhc--------CCCCccccccccC
Q 024005 208 DELTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQ--------QGTCPVCKLRAGS 258 (274)
Q Consensus 208 e~~~C~ICLe~~~~~~~v~~lpCgH~FH~~CI~~WL~~--------~~tCPlCR~~i~~ 258 (274)
-...|..|-..+..++.+ +|-|.|.||+.|+.+|-.. .-.||-|.+.|-.
T Consensus 49 Y~pNC~LC~t~La~gdt~-RLvCyhlfHW~ClneraA~lPanTAPaGyqCP~Cs~eiFP 106 (299)
T KOG3970|consen 49 YNPNCRLCNTPLASGDTT-RLVCYHLFHWKCLNERAANLPANTAPAGYQCPCCSQEIFP 106 (299)
T ss_pred CCCCCceeCCccccCcce-eehhhhhHHHHHhhHHHhhCCCcCCCCcccCCCCCCccCC
Confidence 345799999999988774 5669999999999999754 2369999887743
No 65
>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length. The function of this family is unknown, but it appears to be related to the U-box and ring finger domain by profile-profile comparison.
Probab=96.18 E-value=0.0018 Score=52.99 Aligned_cols=35 Identities=20% Similarity=0.559 Sum_probs=30.1
Q ss_pred cccccccccccccCCeeEEeCCC------CccChhhHHHHH
Q 024005 209 ELTCTVCLEQVNVGEIVRSLPCL------HQFHANCIDPWL 243 (274)
Q Consensus 209 ~~~C~ICLe~~~~~~~v~~lpCg------H~FH~~CI~~WL 243 (274)
..+|.||++.+...+.+..++|+ |.||.+|+.+|-
T Consensus 26 ~~EC~IC~~~I~~~~GvV~vt~~g~lnLEkmfc~~C~~rw~ 66 (134)
T PF05883_consen 26 TVECQICFDRIDNNDGVVYVTDGGTLNLEKMFCADCDKRWR 66 (134)
T ss_pred CeeehhhhhhhhcCCCEEEEecCCeehHHHHHHHHHHHHHH
Confidence 45899999999986677888886 889999999994
No 66
>PHA02825 LAP/PHD finger-like protein; Provisional
Probab=95.98 E-value=0.0056 Score=51.41 Aligned_cols=48 Identities=19% Similarity=0.579 Sum_probs=34.8
Q ss_pred CCcccccccccccccCCeeEEeCCC--C---ccChhhHHHHHhcC--CCCccccccccC
Q 024005 207 EDELTCTVCLEQVNVGEIVRSLPCL--H---QFHANCIDPWLRQQ--GTCPVCKLRAGS 258 (274)
Q Consensus 207 ~e~~~C~ICLe~~~~~~~v~~lpCg--H---~FH~~CI~~WL~~~--~tCPlCR~~i~~ 258 (274)
..+..|-||.++... -.-||. . ..|.+|+.+|+..+ ..|++|+++..-
T Consensus 6 ~~~~~CRIC~~~~~~----~~~PC~CkGs~k~VH~sCL~rWi~~s~~~~CeiC~~~Y~i 60 (162)
T PHA02825 6 LMDKCCWICKDEYDV----VTNYCNCKNENKIVHKECLEEWINTSKNKSCKICNGPYNI 60 (162)
T ss_pred CCCCeeEecCCCCCC----ccCCcccCCCchHHHHHHHHHHHhcCCCCcccccCCeEEE
Confidence 356689999988542 234753 3 56999999999764 479999886643
No 67
>PHA02862 5L protein; Provisional
Probab=95.97 E-value=0.0044 Score=51.24 Aligned_cols=44 Identities=20% Similarity=0.585 Sum_probs=33.2
Q ss_pred ccccccccccccCCeeEEeCCC-----CccChhhHHHHHhc--CCCCcccccccc
Q 024005 210 LTCTVCLEQVNVGEIVRSLPCL-----HQFHANCIDPWLRQ--QGTCPVCKLRAG 257 (274)
Q Consensus 210 ~~C~ICLe~~~~~~~v~~lpCg-----H~FH~~CI~~WL~~--~~tCPlCR~~i~ 257 (274)
+.|-||.++-... .-||. ...|.+|+.+|++. +..|++|+.+..
T Consensus 3 diCWIC~~~~~e~----~~PC~C~GS~K~VHq~CL~~WIn~S~k~~CeLCkteY~ 53 (156)
T PHA02862 3 DICWICNDVCDER----NNFCGCNEEYKVVHIKCMQLWINYSKKKECNLCKTKYN 53 (156)
T ss_pred CEEEEecCcCCCC----cccccccCcchhHHHHHHHHHHhcCCCcCccCCCCeEE
Confidence 4799999985432 35653 46799999999965 457999998764
No 68
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B.
Probab=95.87 E-value=0.0051 Score=41.60 Aligned_cols=45 Identities=24% Similarity=0.540 Sum_probs=22.3
Q ss_pred ccccccccccCC-eeEEeCCCCccChhhHHHHHh-cCCCCccccccc
Q 024005 212 CTVCLEQVNVGE-IVRSLPCLHQFHANCIDPWLR-QQGTCPVCKLRA 256 (274)
Q Consensus 212 C~ICLe~~~~~~-~v~~lpCgH~FH~~CI~~WL~-~~~tCPlCR~~i 256 (274)
|++|.+++...+ ...--+|++..+..|...-++ .+..||-||.+.
T Consensus 1 cp~C~e~~d~~d~~~~PC~Cgf~IC~~C~~~i~~~~~g~CPgCr~~Y 47 (48)
T PF14570_consen 1 CPLCDEELDETDKDFYPCECGFQICRFCYHDILENEGGRCPGCREPY 47 (48)
T ss_dssp -TTTS-B--CCCTT--SSTTS----HHHHHHHTTSS-SB-TTT--B-
T ss_pred CCCcccccccCCCccccCcCCCcHHHHHHHHHHhccCCCCCCCCCCC
Confidence 789999985433 332334899999999888776 477899999864
No 69
>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.86 E-value=0.0056 Score=57.51 Aligned_cols=46 Identities=28% Similarity=0.579 Sum_probs=33.8
Q ss_pred CCcccccccccccccCCeeEEeCCCCccChhhHHHHHhcCCCCccccccccC
Q 024005 207 EDELTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQQGTCPVCKLRAGS 258 (274)
Q Consensus 207 ~e~~~C~ICLe~~~~~~~v~~lpCgH~FH~~CI~~WL~~~~tCPlCR~~i~~ 258 (274)
...+.|.||+++... ...+||||.-| |..- -+....||+||+.+..
T Consensus 303 ~~p~lcVVcl~e~~~---~~fvpcGh~cc--ct~c-s~~l~~CPvCR~rI~~ 348 (355)
T KOG1571|consen 303 PQPDLCVVCLDEPKS---AVFVPCGHVCC--CTLC-SKHLPQCPVCRQRIRL 348 (355)
T ss_pred CCCCceEEecCCccc---eeeecCCcEEE--chHH-HhhCCCCchhHHHHHH
Confidence 345689999999775 47899999866 5443 2345569999997753
No 70
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=95.75 E-value=0.0043 Score=48.02 Aligned_cols=33 Identities=27% Similarity=0.692 Sum_probs=28.5
Q ss_pred CCcccccccccccccCCeeEEeCCCCccChhhHH
Q 024005 207 EDELTCTVCLEQVNVGEIVRSLPCLHQFHANCID 240 (274)
Q Consensus 207 ~e~~~C~ICLe~~~~~~~v~~lpCgH~FH~~CI~ 240 (274)
.+...|++|-..+.. ......||||.||..|+.
T Consensus 76 ~~~~~C~vC~k~l~~-~~f~~~p~~~v~H~~C~~ 108 (109)
T PF10367_consen 76 TESTKCSVCGKPLGN-SVFVVFPCGHVVHYSCIK 108 (109)
T ss_pred CCCCCccCcCCcCCC-ceEEEeCCCeEEeccccc
Confidence 566789999999986 577889999999999975
No 71
>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.71 E-value=0.0025 Score=58.26 Aligned_cols=42 Identities=21% Similarity=0.551 Sum_probs=32.8
Q ss_pred cccccccccccccCCeeEEeCCCCcc-ChhhHHHHHhcCCCCcccccccc
Q 024005 209 ELTCTVCLEQVNVGEIVRSLPCLHQF-HANCIDPWLRQQGTCPVCKLRAG 257 (274)
Q Consensus 209 ~~~C~ICLe~~~~~~~v~~lpCgH~F-H~~CI~~WL~~~~tCPlCR~~i~ 257 (274)
...|.||++... ....|+|||.. |.+|-... ..||+||+.+.
T Consensus 300 ~~LC~ICmDaP~---DCvfLeCGHmVtCt~CGkrm----~eCPICRqyi~ 342 (350)
T KOG4275|consen 300 RRLCAICMDAPR---DCVFLECGHMVTCTKCGKRM----NECPICRQYIV 342 (350)
T ss_pred HHHHHHHhcCCc---ceEEeecCcEEeehhhcccc----ccCchHHHHHH
Confidence 678999998844 45889999954 88886543 38999999764
No 72
>KOG3268 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.66 E-value=0.007 Score=51.74 Aligned_cols=56 Identities=27% Similarity=0.637 Sum_probs=39.2
Q ss_pred CCcccccccccccccC----CeeEEeCCCCccChhhHHHHHhc-----C------CCCccccccccCCCCC
Q 024005 207 EDELTCTVCLEQVNVG----EIVRSLPCLHQFHANCIDPWLRQ-----Q------GTCPVCKLRAGSGWHE 262 (274)
Q Consensus 207 ~e~~~C~ICLe~~~~~----~~v~~lpCgH~FH~~CI~~WL~~-----~------~tCPlCR~~i~~~~~~ 262 (274)
++...|.||...-..| ...--..||..||.-|+..||+. + ..||.|..++.-+.++
T Consensus 163 d~~~~cgicyayqldGTipDqtCdN~qCgkpFHqiCL~dWLRgilTsRQSFdiiFGeCPYCS~PialKmSg 233 (234)
T KOG3268|consen 163 DELGACGICYAYQLDGTIPDQTCDNIQCGKPFHQICLTDWLRGILTSRQSFDIIFGECPYCSDPIALKMSG 233 (234)
T ss_pred hhhhcccceeeeecCCccccccccccccCCcHHHHHHHHHHHHHhhccceeeeeeccCCCCCCcceeeccC
Confidence 4555788887543333 12223559999999999999974 1 3699999998776543
No 73
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=95.55 E-value=0.01 Score=55.55 Aligned_cols=50 Identities=26% Similarity=0.631 Sum_probs=39.5
Q ss_pred CCCCCcccccccccccccCCeeEEeCCCCccChhhHHHH--HhcCCCCccccccc
Q 024005 204 LKTEDELTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPW--LRQQGTCPVCKLRA 256 (274)
Q Consensus 204 ~~~~e~~~C~ICLe~~~~~~~v~~lpCgH~FH~~CI~~W--L~~~~tCPlCR~~i 256 (274)
..++++..|-||-+...-. ..+||+|..|.-|..+. |-.++.||+||..-
T Consensus 56 dtDEen~~C~ICA~~~TYs---~~~PC~H~~CH~Ca~RlRALY~~K~C~~CrTE~ 107 (493)
T COG5236 56 DTDEENMNCQICAGSTTYS---ARYPCGHQICHACAVRLRALYMQKGCPLCRTET 107 (493)
T ss_pred ccccccceeEEecCCceEE---EeccCCchHHHHHHHHHHHHHhccCCCcccccc
Confidence 3457788999999886644 78999999999997653 45678899999854
No 74
>KOG1952 consensus Transcription factor NF-X1, contains NFX-type Zn2+-binding and R3H domains [Transcription]
Probab=95.34 E-value=0.0097 Score=61.26 Aligned_cols=48 Identities=35% Similarity=0.854 Sum_probs=37.2
Q ss_pred CCcccccccccccccCCeeEEe-CCCCccChhhHHHHHhcC-------CCCccccc
Q 024005 207 EDELTCTVCLEQVNVGEIVRSL-PCLHQFHANCIDPWLRQQ-------GTCPVCKL 254 (274)
Q Consensus 207 ~e~~~C~ICLe~~~~~~~v~~l-pCgH~FH~~CI~~WL~~~-------~tCPlCR~ 254 (274)
.+...|.||.+.+...+.+-.- .|-|+||..||..|-++. -.||.|..
T Consensus 189 ~~~yeCmIC~e~I~~t~~~WSC~sCYhVFHl~CI~~WArs~ek~~~~~WrCP~Cqs 244 (950)
T KOG1952|consen 189 NRKYECMICTERIKRTAPVWSCKSCYHVFHLNCIKKWARSSEKTGQDGWRCPACQS 244 (950)
T ss_pred cCceEEEEeeeeccccCCceecchhhhhhhHHHHHHHHHHhhhccCccccCCcccc
Confidence 3567999999999877654432 388999999999998652 15999973
No 75
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.19 E-value=0.011 Score=56.48 Aligned_cols=37 Identities=24% Similarity=0.681 Sum_probs=32.8
Q ss_pred CcccccccccccccCCeeEEeCCCCccChhhHHHHHh
Q 024005 208 DELTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLR 244 (274)
Q Consensus 208 e~~~C~ICLe~~~~~~~v~~lpCgH~FH~~CI~~WL~ 244 (274)
....|.||++..........+||+|+||..|+...+.
T Consensus 183 slf~C~ICf~e~~G~~c~~~lpC~Hv~Ck~C~kdY~~ 219 (445)
T KOG1814|consen 183 SLFDCCICFEEQMGQHCFKFLPCSHVFCKSCLKDYFT 219 (445)
T ss_pred hcccceeeehhhcCcceeeecccchHHHHHHHHHHHH
Confidence 4558999999988778888999999999999999985
No 76
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=94.94 E-value=0.015 Score=54.40 Aligned_cols=51 Identities=24% Similarity=0.606 Sum_probs=37.4
Q ss_pred CcccccccccccccCCe-eEEeCCCCccChhhHHHHHh-cCCCCccccccccC
Q 024005 208 DELTCTVCLEQVNVGEI-VRSLPCLHQFHANCIDPWLR-QQGTCPVCKLRAGS 258 (274)
Q Consensus 208 e~~~C~ICLe~~~~~~~-v~~lpCgH~FH~~CI~~WL~-~~~tCPlCR~~i~~ 258 (274)
+++.|+.|+|.+...++ ..-.|||-..|.-|...--+ -++.||-||....+
T Consensus 13 eed~cplcie~mditdknf~pc~cgy~ic~fc~~~irq~lngrcpacrr~y~d 65 (480)
T COG5175 13 EEDYCPLCIEPMDITDKNFFPCPCGYQICQFCYNNIRQNLNGRCPACRRKYDD 65 (480)
T ss_pred ccccCcccccccccccCCcccCCcccHHHHHHHHHHHhhccCCChHhhhhccc
Confidence 45569999999987764 33466898888888665432 26789999987654
No 77
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.89 E-value=0.024 Score=50.85 Aligned_cols=52 Identities=15% Similarity=0.245 Sum_probs=44.8
Q ss_pred CcccccccccccccCCeeEEeC-CCCccChhhHHHHHhcCCCCccccccccCC
Q 024005 208 DELTCTVCLEQVNVGEIVRSLP-CLHQFHANCIDPWLRQQGTCPVCKLRAGSG 259 (274)
Q Consensus 208 e~~~C~ICLe~~~~~~~v~~lp-CgH~FH~~CI~~WL~~~~tCPlCR~~i~~~ 259 (274)
....|++|.+.+.+.-.+..|. |||+|+.+|.++.++....||+|-.++.+.
T Consensus 220 ~ryiCpvtrd~LtNt~~ca~Lr~sg~Vv~~ecvEklir~D~v~pv~d~plkdr 272 (303)
T KOG3039|consen 220 KRYICPVTRDTLTNTTPCAVLRPSGHVVTKECVEKLIRKDMVDPVTDKPLKDR 272 (303)
T ss_pred cceecccchhhhcCccceEEeccCCcEeeHHHHHHhccccccccCCCCcCccc
Confidence 5678999999999887666665 999999999999999999999997776654
No 78
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.86 E-value=0.014 Score=60.08 Aligned_cols=42 Identities=21% Similarity=0.709 Sum_probs=34.1
Q ss_pred cccccccccccccCCeeEEeCCCCccChhhHHHHHhcCCCCcccccc
Q 024005 209 ELTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQQGTCPVCKLR 255 (274)
Q Consensus 209 ~~~C~ICLe~~~~~~~v~~lpCgH~FH~~CI~~WL~~~~tCPlCR~~ 255 (274)
..+|.+|--.+..+ .+...|||.||.+|+. .....||.|+..
T Consensus 840 ~skCs~C~~~LdlP--~VhF~CgHsyHqhC~e---~~~~~CP~C~~e 881 (933)
T KOG2114|consen 840 VSKCSACEGTLDLP--FVHFLCGHSYHQHCLE---DKEDKCPKCLPE 881 (933)
T ss_pred eeeecccCCccccc--eeeeecccHHHHHhhc---cCcccCCccchh
Confidence 35899998888755 4567799999999998 456789999873
No 79
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4
Probab=94.85 E-value=0.015 Score=40.35 Aligned_cols=47 Identities=28% Similarity=0.487 Sum_probs=35.7
Q ss_pred CcccccccccccccCCeeEEeCCCCccChhhHHHHHhcCCCCccccccccCC
Q 024005 208 DELTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQQGTCPVCKLRAGSG 259 (274)
Q Consensus 208 e~~~C~ICLe~~~~~~~v~~lpCgH~FH~~CI~~WL~~~~tCPlCR~~i~~~ 259 (274)
....|..|...-..+ ..+||+|..+..|..-+ +-+.||.|-.++...
T Consensus 6 ~~~~~~~~~~~~~~~---~~~pCgH~I~~~~f~~~--rYngCPfC~~~~~~~ 52 (55)
T PF14447_consen 6 PEQPCVFCGFVGTKG---TVLPCGHLICDNCFPGE--RYNGCPFCGTPFEFD 52 (55)
T ss_pred cceeEEEcccccccc---ccccccceeeccccChh--hccCCCCCCCcccCC
Confidence 345677777765544 78999999999996654 677899998877653
No 80
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=94.81 E-value=0.012 Score=57.81 Aligned_cols=54 Identities=26% Similarity=0.611 Sum_probs=41.3
Q ss_pred CCcccccccccccccCCeeEEeCCCCccChhhHHHHHhc-----CCCCccccccccCCCCCC
Q 024005 207 EDELTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQ-----QGTCPVCKLRAGSGWHET 263 (274)
Q Consensus 207 ~e~~~C~ICLe~~~~~~~v~~lpCgH~FH~~CI~~WL~~-----~~tCPlCR~~i~~~~~~~ 263 (274)
.++..|.+|-+.-... ....|.|.||.-||.++... +-+||.|-..+.-..+++
T Consensus 534 k~~~~C~lc~d~aed~---i~s~ChH~FCrlCi~eyv~~f~~~~nvtCP~C~i~LsiDlse~ 592 (791)
T KOG1002|consen 534 KGEVECGLCHDPAEDY---IESSCHHKFCRLCIKEYVESFMENNNVTCPVCHIGLSIDLSEP 592 (791)
T ss_pred cCceeecccCChhhhh---HhhhhhHHHHHHHHHHHHHhhhcccCCCCccccccccccccch
Confidence 4567899998885543 66779999999999998753 458999988776554443
No 81
>KOG4739 consensus Uncharacterized protein involved in synaptonemal complex formation [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=94.69 E-value=0.01 Score=52.94 Aligned_cols=46 Identities=22% Similarity=0.501 Sum_probs=34.0
Q ss_pred cccccccccccCCeeEEeCCCCccChhhHHHHHhcCCCCccccccccCC
Q 024005 211 TCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQQGTCPVCKLRAGSG 259 (274)
Q Consensus 211 ~C~ICLe~~~~~~~v~~lpCgH~FH~~CI~~WL~~~~tCPlCR~~i~~~ 259 (274)
-|.-|.---. ++....+.|+|+||..|...- ....||+||+.+...
T Consensus 5 hCn~C~~~~~-~~~f~LTaC~HvfC~~C~k~~--~~~~C~lCkk~ir~i 50 (233)
T KOG4739|consen 5 HCNKCFRFPS-QDPFFLTACRHVFCEPCLKAS--SPDVCPLCKKSIRII 50 (233)
T ss_pred EeccccccCC-CCceeeeechhhhhhhhcccC--Cccccccccceeeee
Confidence 4776665544 778888889999999997552 222899999986543
No 82
>PHA03096 p28-like protein; Provisional
Probab=94.67 E-value=0.015 Score=53.60 Aligned_cols=36 Identities=28% Similarity=0.696 Sum_probs=28.1
Q ss_pred ccccccccccccC----CeeEEeC-CCCccChhhHHHHHhc
Q 024005 210 LTCTVCLEQVNVG----EIVRSLP-CLHQFHANCIDPWLRQ 245 (274)
Q Consensus 210 ~~C~ICLe~~~~~----~~v~~lp-CgH~FH~~CI~~WL~~ 245 (274)
..|.||++..... ..-..|+ |.|.||..||..|-..
T Consensus 179 k~c~ic~e~~~~k~~~~~~fgil~~c~h~fc~~ci~~wr~~ 219 (284)
T PHA03096 179 KICGICLENIKAKYIIKKYYGILSEIKHEFNIFCIKIWMTE 219 (284)
T ss_pred hhcccchhhhhhhccccccccccccCCcHHHHHHHHHHHHh
Confidence 5799999987643 2333576 9999999999999754
No 83
>PF08746 zf-RING-like: RING-like domain; InterPro: IPR014857 This is a zinc finger domain that is related to the C3HC4 RING finger domain (IPR001841 from INTERPRO). ; PDB: 3NW0_A 2CT0_A.
Probab=94.62 E-value=0.014 Score=38.46 Aligned_cols=41 Identities=29% Similarity=0.824 Sum_probs=24.1
Q ss_pred ccccccccccCCeeEEeCCCCccChhhHHHHHhcCC--CCccc
Q 024005 212 CTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQQG--TCPVC 252 (274)
Q Consensus 212 C~ICLe~~~~~~~v~~lpCgH~FH~~CI~~WL~~~~--tCPlC 252 (274)
|.+|-+-...|.......|+-.+|..|+..+++... .||.|
T Consensus 1 C~~C~~iv~~G~~C~~~~C~~r~H~~C~~~y~r~~~~~~CP~C 43 (43)
T PF08746_consen 1 CEACKEIVTQGQRCSNRDCNVRLHDDCFKKYFRHRSNPKCPNC 43 (43)
T ss_dssp -TTT-SB-SSSEE-SS--S--EE-HHHHHHHTTT-SS-B-TTT
T ss_pred CcccchhHeeeccCCCCccCchHHHHHHHHHHhcCCCCCCcCC
Confidence 678888888774332234888999999999998766 79988
No 84
>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]
Probab=94.29 E-value=0.032 Score=51.90 Aligned_cols=47 Identities=30% Similarity=0.496 Sum_probs=37.7
Q ss_pred CCcccccccccccccCCeeEEeC-CCCccChhhHHHHHhcCCCCccccccc
Q 024005 207 EDELTCTVCLEQVNVGEIVRSLP-CLHQFHANCIDPWLRQQGTCPVCKLRA 256 (274)
Q Consensus 207 ~e~~~C~ICLe~~~~~~~v~~lp-CgH~FH~~CI~~WL~~~~tCPlCR~~i 256 (274)
.+...|++|+....++ ..+. -|-+||..||.+.+...+.||+=-.++
T Consensus 298 ~~~~~CpvClk~r~Np---tvl~vSGyVfCY~Ci~~Yv~~~~~CPVT~~p~ 345 (357)
T KOG0826|consen 298 PDREVCPVCLKKRQNP---TVLEVSGYVFCYPCIFSYVVNYGHCPVTGYPA 345 (357)
T ss_pred CccccChhHHhccCCC---ceEEecceEEeHHHHHHHHHhcCCCCccCCcc
Confidence 3556899999998766 3333 699999999999999999999865544
No 85
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=94.11 E-value=0.024 Score=52.14 Aligned_cols=43 Identities=30% Similarity=0.631 Sum_probs=35.1
Q ss_pred cccccccccccccCCeeEEeC-CCCccChhhHHHHHh-cCCCCccccc
Q 024005 209 ELTCTVCLEQVNVGEIVRSLP-CLHQFHANCIDPWLR-QQGTCPVCKL 254 (274)
Q Consensus 209 ~~~C~ICLe~~~~~~~v~~lp-CgH~FH~~CI~~WL~-~~~tCPlCR~ 254 (274)
.+.|+.|--.+.++ ..+| |+|.||.+||..-|. ....||.|..
T Consensus 274 ~LkCplc~~Llrnp---~kT~cC~~~fc~eci~~al~dsDf~CpnC~r 318 (427)
T COG5222 274 SLKCPLCHCLLRNP---MKTPCCGHTFCDECIGTALLDSDFKCPNCSR 318 (427)
T ss_pred cccCcchhhhhhCc---ccCccccchHHHHHHhhhhhhccccCCCccc
Confidence 47999998887766 5667 899999999998764 5678999944
No 86
>PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function. The region of interest contains nine highly conserved cysteine residues and is approximately 160 amino acids in length, which probably represent a zinc-binding domain.
Probab=93.84 E-value=0.056 Score=45.46 Aligned_cols=33 Identities=30% Similarity=0.833 Sum_probs=23.0
Q ss_pred cccccccccccccCCeeEEeC------------CCCcc-ChhhHHHHHh
Q 024005 209 ELTCTVCLEQVNVGEIVRSLP------------CLHQF-HANCIDPWLR 244 (274)
Q Consensus 209 ~~~C~ICLe~~~~~~~v~~lp------------CgH~F-H~~CI~~WL~ 244 (274)
+..|+||||--.+. +.|- |+..| |.+|+++.-+
T Consensus 2 d~~CpICme~PHNA---VLLlCSS~~kgcRpymc~Ts~rhSNCLdqfkk 47 (162)
T PF07800_consen 2 DVTCPICMEHPHNA---VLLLCSSHEKGCRPYMCDTSYRHSNCLDQFKK 47 (162)
T ss_pred CccCceeccCCCce---EEEEeccccCCccccccCCccchhHHHHHHHH
Confidence 45899999987654 3333 44444 8999999753
No 87
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.66 E-value=0.005 Score=58.36 Aligned_cols=51 Identities=18% Similarity=0.510 Sum_probs=43.9
Q ss_pred cccccccccccccC-CeeEEeCCCCccChhhHHHHHhcCCCCccccccccCC
Q 024005 209 ELTCTVCLEQVNVG-EIVRSLPCLHQFHANCIDPWLRQQGTCPVCKLRAGSG 259 (274)
Q Consensus 209 ~~~C~ICLe~~~~~-~~v~~lpCgH~FH~~CI~~WL~~~~tCPlCR~~i~~~ 259 (274)
...|+||.+.++.. +.+..+-|||.+|..|+.+||.....||.|+..++..
T Consensus 196 v~sl~I~~~slK~~y~k~~~~~~g~~~~~~kL~k~L~~~~kl~~~~rel~~~ 247 (465)
T KOG0827|consen 196 VGSLSICFESLKQNYDKISAIVCGHIYHHGKLSKWLATKRKLPSCRRELPKN 247 (465)
T ss_pred HhhhHhhHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHhHHHHhhhhhh
Confidence 45799999999866 6666778999999999999999988999999887643
No 88
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.39 E-value=0.045 Score=50.28 Aligned_cols=47 Identities=30% Similarity=0.667 Sum_probs=37.3
Q ss_pred ccccccccccccCC---eeEEeCCCCccChhhHHHHHhcCC-CCccccccc
Q 024005 210 LTCTVCLEQVNVGE---IVRSLPCLHQFHANCIDPWLRQQG-TCPVCKLRA 256 (274)
Q Consensus 210 ~~C~ICLe~~~~~~---~v~~lpCgH~FH~~CI~~WL~~~~-tCPlCR~~i 256 (274)
..|-||-++|...+ ..+.|.|||.+|..|+.+-+.... .||.||...
T Consensus 4 ~~c~~c~~~~s~~~~~~~p~~l~c~h~~c~~c~~~l~~~~~i~cpfcR~~~ 54 (296)
T KOG4185|consen 4 PECEICNEDYSSEDGDHIPRVLKCGHTICQNCASKLLGNSRILCPFCRETT 54 (296)
T ss_pred CceeecCccccccCcccCCcccccCceehHhHHHHHhcCceeeccCCCCcc
Confidence 47999999998764 234567999999999987665543 699999985
No 89
>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans. They are purported to be transmembrane protein-precursors but their function is unknown.
Probab=92.83 E-value=0.14 Score=48.80 Aligned_cols=29 Identities=21% Similarity=0.768 Sum_probs=21.7
Q ss_pred CCCccChhhHHHHHhc-------------CCCCccccccccC
Q 024005 230 CLHQFHANCIDPWLRQ-------------QGTCPVCKLRAGS 258 (274)
Q Consensus 230 CgH~FH~~CI~~WL~~-------------~~tCPlCR~~i~~ 258 (274)
|....|.+|+-+|+.. +.+||.||++++-
T Consensus 311 CRPmWC~~Cm~kwFasrQd~~~~~~Wl~~~~~CPtCRa~FCi 352 (358)
T PF10272_consen 311 CRPMWCLECMGKWFASRQDQQHPETWLSGKCPCPTCRAKFCI 352 (358)
T ss_pred ccchHHHHHHHHHhhhcCCCCChhhhhcCCCCCCCCccccee
Confidence 3455688999999842 3479999998764
No 90
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=92.36 E-value=0.19 Score=34.80 Aligned_cols=44 Identities=25% Similarity=0.650 Sum_probs=33.2
Q ss_pred CcccccccccccccCCeeEEeC-CCCccChhhHHHHHhcCCCCcc--cccc
Q 024005 208 DELTCTVCLEQVNVGEIVRSLP-CLHQFHANCIDPWLRQQGTCPV--CKLR 255 (274)
Q Consensus 208 e~~~C~ICLe~~~~~~~v~~lp-CgH~FH~~CI~~WL~~~~tCPl--CR~~ 255 (274)
....|.+|-+.|..++.+..-| |+-.+|.+|.++ ...|-. |..+
T Consensus 4 ~~~~C~~Cg~~~~~~dDiVvCp~CgapyHR~C~~~----~g~C~~~~c~~~ 50 (54)
T PF14446_consen 4 EGCKCPVCGKKFKDGDDIVVCPECGAPYHRDCWEK----AGGCINYSCGTG 50 (54)
T ss_pred cCccChhhCCcccCCCCEEECCCCCCcccHHHHhh----CCceEeccCCCC
Confidence 4458999999998777777767 999999999644 556655 5443
No 91
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=92.33 E-value=0.04 Score=59.26 Aligned_cols=44 Identities=30% Similarity=0.795 Sum_probs=38.3
Q ss_pred Ccccccccccccc-cCCeeEEeCCCCccChhhHHHHHhcCCCCccccc
Q 024005 208 DELTCTVCLEQVN-VGEIVRSLPCLHQFHANCIDPWLRQQGTCPVCKL 254 (274)
Q Consensus 208 e~~~C~ICLe~~~-~~~~v~~lpCgH~FH~~CI~~WL~~~~tCPlCR~ 254 (274)
+-..|.||++.+. .+ .+..|||.+|..|...|+..+..||.|+.
T Consensus 1152 ~~~~c~ic~dil~~~~---~I~~cgh~~c~~c~~~~l~~~s~~~~~ks 1196 (1394)
T KOG0298|consen 1152 GHFVCEICLDILRNQG---GIAGCGHEPCCRCDELWLYASSRCPICKS 1196 (1394)
T ss_pred cccchHHHHHHHHhcC---CeeeechhHhhhHHHHHHHHhccCcchhh
Confidence 3448999999988 44 56779999999999999999999999984
No 92
>PF03854 zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The RING-finger is a specialised type of Zn-finger of 40 to 60 residues that binds two atoms of zinc, and is probably involved in mediating protein-protein interactions [, , ]. There are two different variants, the C3HC4-type and a C3H2C3-type, which is clearly related despite the different cysteine/histidine pattern. The latter type is sometimes referred to as 'RING-H2 finger'. The RING domain is a protein interaction domain which has been implicated in a range of diverse biological processes. Several 3D-structures for RING-fingers are known [, ]. The 3D structure of the zinc ligation system is unique to the RING domain and is referred to as the 'cross-brace' motif. The spacing of the cysteines in such a domain is: C-x(2)-C-x(9 to 39)-C-x(1 to 3)-H-x(2 to 3)-C-x(2)-C-x(4 to 48)-C-x(2)-C Metal ligand pairs one and three co-ordinate to bind one zinc ion, whilst pairs two and four bind the second. This entry represents RING finger protein Z, a small polypeptide found in some negative-strand RNA viruses including Lassa fever virus, which plays a crucial role in virion assembly and budding. RING finger Z has been shown to interact with several host proteins, including promyelocytic leukemia protein and the eukaryotic translation initiation factor 4E [, ]. It is sufficient in the absence of any other viral proteins to release virus-like particles from the infected cell []. This protein is also responsible for arenavirus superinfection exclusion; expression of this protein in a host cell strongly and specifically inhibits areanavirus transcription and replication []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003723 RNA binding, 0008270 zinc ion binding; PDB: 2KO5_A.
Probab=92.33 E-value=0.044 Score=36.83 Aligned_cols=44 Identities=23% Similarity=0.563 Sum_probs=26.0
Q ss_pred cccccccccccCCeeEEeCC-CCccChhhHHHHHhcCCCCccccccccCC
Q 024005 211 TCTVCLEQVNVGEIVRSLPC-LHQFHANCIDPWLRQQGTCPVCKLRAGSG 259 (274)
Q Consensus 211 ~C~ICLe~~~~~~~v~~lpC-gH~FH~~CI~~WL~~~~tCPlCR~~i~~~ 259 (274)
.|--|+-..+ ....| .|+.|..|+...|.++..||+|+.+++.+
T Consensus 4 nCKsCWf~~k-----~Li~C~dHYLCl~CLt~ml~~s~~C~iC~~~LPtk 48 (50)
T PF03854_consen 4 NCKSCWFANK-----GLIKCSDHYLCLNCLTLMLSRSDRCPICGKPLPTK 48 (50)
T ss_dssp ---SS-S--S-----SEEE-SS-EEEHHHHHHT-SSSSEETTTTEE----
T ss_pred cChhhhhcCC-----CeeeecchhHHHHHHHHHhccccCCCcccCcCccc
Confidence 4666665533 24567 58999999999999999999999999875
No 93
>KOG3002 consensus Zn finger protein [General function prediction only]
Probab=92.28 E-value=0.078 Score=49.31 Aligned_cols=45 Identities=29% Similarity=0.708 Sum_probs=37.2
Q ss_pred CCcccccccccccccCCeeEEeCC--CCccChhhHHHHHhcCCCCccccccccC
Q 024005 207 EDELTCTVCLEQVNVGEIVRSLPC--LHQFHANCIDPWLRQQGTCPVCKLRAGS 258 (274)
Q Consensus 207 ~e~~~C~ICLe~~~~~~~v~~lpC--gH~FH~~CI~~WL~~~~tCPlCR~~i~~ 258 (274)
.+...|+||.+.+..+ +..| ||.-|..|-. +....||.||.+++.
T Consensus 46 ~~lleCPvC~~~l~~P----i~QC~nGHlaCssC~~---~~~~~CP~Cr~~~g~ 92 (299)
T KOG3002|consen 46 LDLLDCPVCFNPLSPP----IFQCDNGHLACSSCRT---KVSNKCPTCRLPIGN 92 (299)
T ss_pred hhhccCchhhccCccc----ceecCCCcEehhhhhh---hhcccCCcccccccc
Confidence 4677999999999876 5667 8999999964 457889999999883
No 94
>KOG1940 consensus Zn-finger protein [General function prediction only]
Probab=92.27 E-value=0.057 Score=49.52 Aligned_cols=45 Identities=27% Similarity=0.658 Sum_probs=37.6
Q ss_pred ccccccccccccCC-eeEEeCCCCccChhhHHHHHhcCCCCccccc
Q 024005 210 LTCTVCLEQVNVGE-IVRSLPCLHQFHANCIDPWLRQQGTCPVCKL 254 (274)
Q Consensus 210 ~~C~ICLe~~~~~~-~v~~lpCgH~FH~~CI~~WL~~~~tCPlCR~ 254 (274)
..|+||.+.+.... .+..++|||.-|..|.......+-+||+|.+
T Consensus 159 ~ncPic~e~l~~s~~~~~~~~CgH~~h~~cf~e~~~~~y~CP~C~~ 204 (276)
T KOG1940|consen 159 FNCPICKEYLFLSFEDAGVLKCGHYMHSRCFEEMICEGYTCPICSK 204 (276)
T ss_pred CCCchhHHHhccccccCCccCcccchHHHHHHHHhccCCCCCcccc
Confidence 35999999876553 4567889999999999998887889999987
No 95
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=91.77 E-value=0.068 Score=54.90 Aligned_cols=46 Identities=22% Similarity=0.561 Sum_probs=37.4
Q ss_pred ccccccccccccCCeeEEeCCCCccChhhHHHHHhcC--CCCccccccccCC
Q 024005 210 LTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQQ--GTCPVCKLRAGSG 259 (274)
Q Consensus 210 ~~C~ICLe~~~~~~~v~~lpCgH~FH~~CI~~WL~~~--~tCPlCR~~i~~~ 259 (274)
..|.||++ .+.....+|+|.||.+|+.+-+... ..||.||..+..+
T Consensus 455 ~~c~ic~~----~~~~~it~c~h~~c~~c~~~~i~~~~~~~~~~cr~~l~~~ 502 (674)
T KOG1001|consen 455 HWCHICCD----LDSFFITRCGHDFCVECLKKSIQQSENAPCPLCRNVLKEK 502 (674)
T ss_pred cccccccc----cccceeecccchHHHHHHHhccccccCCCCcHHHHHHHHH
Confidence 68999999 3566888999999999999877653 3599999877654
No 96
>PF04641 Rtf2: Rtf2 RING-finger
Probab=91.68 E-value=0.2 Score=45.50 Aligned_cols=54 Identities=22% Similarity=0.376 Sum_probs=41.8
Q ss_pred CCcccccccccccccCC-eeEEeCCCCccChhhHHHHHhcCCCCccccccccCCCC
Q 024005 207 EDELTCTVCLEQVNVGE-IVRSLPCLHQFHANCIDPWLRQQGTCPVCKLRAGSGWH 261 (274)
Q Consensus 207 ~e~~~C~ICLe~~~~~~-~v~~lpCgH~FH~~CI~~WL~~~~tCPlCR~~i~~~~~ 261 (274)
.....|+|....+.... -+...||||+|...+|.+- +....||+|-.++....-
T Consensus 111 ~~~~~CPvt~~~~~~~~~fv~l~~cG~V~s~~alke~-k~~~~Cp~c~~~f~~~Di 165 (260)
T PF04641_consen 111 EGRFICPVTGKEFNGKHKFVYLRPCGCVFSEKALKEL-KKSKKCPVCGKPFTEEDI 165 (260)
T ss_pred CceeECCCCCcccCCceeEEEEcCCCCEeeHHHHHhh-cccccccccCCccccCCE
Confidence 46779999999996443 4555689999999999996 335679999888775543
No 97
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.53 E-value=0.083 Score=54.96 Aligned_cols=36 Identities=25% Similarity=0.576 Sum_probs=30.6
Q ss_pred CCcccccccccccccCCeeEEeCCCCccChhhHHHHH
Q 024005 207 EDELTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWL 243 (274)
Q Consensus 207 ~e~~~C~ICLe~~~~~~~v~~lpCgH~FH~~CI~~WL 243 (274)
+..+.|.+|...+.. ..-...||||.||++||.+-.
T Consensus 815 ep~d~C~~C~~~ll~-~pF~vf~CgH~FH~~Cl~~~v 850 (911)
T KOG2034|consen 815 EPQDSCDHCGRPLLI-KPFYVFPCGHCFHRDCLIRHV 850 (911)
T ss_pred cCccchHHhcchhhc-CcceeeeccchHHHHHHHHHH
Confidence 677899999988774 467789999999999998865
No 98
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=90.44 E-value=0.15 Score=52.41 Aligned_cols=40 Identities=30% Similarity=0.695 Sum_probs=29.5
Q ss_pred cccccccccccCCeeEEeCCCCccChhhHHHHHhcCCCCcc
Q 024005 211 TCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQQGTCPV 251 (274)
Q Consensus 211 ~C~ICLe~~~~~~~v~~lpCgH~FH~~CI~~WL~~~~tCPl 251 (274)
.|.||--.+. +....+..|+|+.|.+|+..|++....||.
T Consensus 1030 ~C~~C~l~V~-gss~~Cg~C~Hv~H~sc~~eWf~~gd~Cps 1069 (1081)
T KOG0309|consen 1030 QCAICHLAVR-GSSNFCGTCGHVGHTSCMMEWFRTGDVCPS 1069 (1081)
T ss_pred eeeeEeeEee-ccchhhccccccccHHHHHHHHhcCCcCCC
Confidence 4555544433 333445679999999999999999999984
No 99
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0.
Probab=90.01 E-value=0.23 Score=40.66 Aligned_cols=52 Identities=23% Similarity=0.389 Sum_probs=37.4
Q ss_pred CcccccccccccccCCeeEEeC---CCCccChhhHHHHHhc---CCCCccccccccCCCC
Q 024005 208 DELTCTVCLEQVNVGEIVRSLP---CLHQFHANCIDPWLRQ---QGTCPVCKLRAGSGWH 261 (274)
Q Consensus 208 e~~~C~ICLe~~~~~~~v~~lp---CgH~FH~~CI~~WL~~---~~tCPlCR~~i~~~~~ 261 (274)
...+|.||.|..... ...-| ||-..|.-|-....+. ...||+||..+.+...
T Consensus 79 ~lYeCnIC~etS~ee--~FLKPneCCgY~iCn~Cya~LWK~~~~ypvCPvCkTSFKss~~ 136 (140)
T PF05290_consen 79 KLYECNICKETSAEE--RFLKPNECCGYSICNACYANLWKFCNLYPVCPVCKTSFKSSSS 136 (140)
T ss_pred CceeccCcccccchh--hcCCcccccchHHHHHHHHHHHHHcccCCCCCccccccccccc
Confidence 456899999987644 22223 8999999997774443 5689999998876543
No 100
>KOG1609 consensus Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=89.75 E-value=0.17 Score=46.48 Aligned_cols=50 Identities=24% Similarity=0.553 Sum_probs=36.6
Q ss_pred cccccccccccccCCe-eEEeCCC-----CccChhhHHHHHh--cCCCCccccccccC
Q 024005 209 ELTCTVCLEQVNVGEI-VRSLPCL-----HQFHANCIDPWLR--QQGTCPVCKLRAGS 258 (274)
Q Consensus 209 ~~~C~ICLe~~~~~~~-v~~lpCg-----H~FH~~CI~~WL~--~~~tCPlCR~~i~~ 258 (274)
+..|-||.++...... ....||. +..|..|+..|+. .+..|.+|......
T Consensus 78 ~~~cRIc~~~~~~~~~~~l~~pC~C~g~l~~vH~~cl~~W~~~~~~~~CeiC~~~~~~ 135 (323)
T KOG1609|consen 78 GPICRICHEEDEESNGLLLISPCSCKGSLAYVHRSCLEKWFSIKGNITCEICKSFFIN 135 (323)
T ss_pred CCcEEEEecccccccccccccCccccCcHHHHHHHHHHhhhccccCeeeeccccccee
Confidence 4689999997654321 3567763 5679999999997 56689999875543
No 101
>KOG4367 consensus Predicted Zn-finger protein [Function unknown]
Probab=89.05 E-value=0.22 Score=48.20 Aligned_cols=36 Identities=36% Similarity=0.607 Sum_probs=31.7
Q ss_pred CCcccccccccccccCCeeEEeCCCCccChhhHHHHHhc
Q 024005 207 EDELTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQ 245 (274)
Q Consensus 207 ~e~~~C~ICLe~~~~~~~v~~lpCgH~FH~~CI~~WL~~ 245 (274)
+++.+|+||-.-|..+ .+|||+|..|..|...-+.+
T Consensus 2 eeelkc~vc~~f~~ep---iil~c~h~lc~~ca~~~~~~ 37 (699)
T KOG4367|consen 2 EEELKCPVCGSFYREP---IILPCSHNLCQACARNILVQ 37 (699)
T ss_pred cccccCceehhhccCc---eEeecccHHHHHHHHhhccc
Confidence 5788999999999877 89999999999999877654
No 102
>KOG1100 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=88.93 E-value=0.22 Score=43.93 Aligned_cols=40 Identities=33% Similarity=0.701 Sum_probs=30.4
Q ss_pred ccccccccccCCeeEEeCCCC-ccChhhHHHHHhcCCCCccccccccC
Q 024005 212 CTVCLEQVNVGEIVRSLPCLH-QFHANCIDPWLRQQGTCPVCKLRAGS 258 (274)
Q Consensus 212 C~ICLe~~~~~~~v~~lpCgH-~FH~~CI~~WL~~~~tCPlCR~~i~~ 258 (274)
|-.|-+. +..+..+||.| .+|..|=.. -.+||+|+.....
T Consensus 161 Cr~C~~~---~~~VlllPCrHl~lC~~C~~~----~~~CPiC~~~~~s 201 (207)
T KOG1100|consen 161 CRKCGER---EATVLLLPCRHLCLCGICDES----LRICPICRSPKTS 201 (207)
T ss_pred ceecCcC---CceEEeecccceEeccccccc----CccCCCCcChhhc
Confidence 8899777 45688999988 578899543 4569999876654
No 103
>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]
Probab=87.61 E-value=0.22 Score=46.23 Aligned_cols=49 Identities=24% Similarity=0.522 Sum_probs=32.9
Q ss_pred cccccccccccccCCeeEEeCCCCccChhhHHHHHhcCCCCccccccccCCCC
Q 024005 209 ELTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQQGTCPVCKLRAGSGWH 261 (274)
Q Consensus 209 ~~~C~ICLe~~~~~~~v~~lpCgH~FH~~CI~~WL~~~~tCPlCR~~i~~~~~ 261 (274)
.-.|.-|=-.+.. --+.+||.|+||.+|... ...+.||.|-.++....+
T Consensus 90 VHfCd~Cd~PI~I--YGRmIPCkHvFCl~CAr~--~~dK~Cp~C~d~VqrIeq 138 (389)
T KOG2932|consen 90 VHFCDRCDFPIAI--YGRMIPCKHVFCLECARS--DSDKICPLCDDRVQRIEQ 138 (389)
T ss_pred eEeecccCCccee--eecccccchhhhhhhhhc--CccccCcCcccHHHHHHH
Confidence 4466666444331 225689999999999643 345689999877765433
No 104
>COG5183 SSM4 Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=86.85 E-value=0.44 Score=49.42 Aligned_cols=51 Identities=22% Similarity=0.600 Sum_probs=37.6
Q ss_pred CCcccccccccccccCCeeEEeCCC-----CccChhhHHHHHhcC--CCCccccccccC
Q 024005 207 EDELTCTVCLEQVNVGEIVRSLPCL-----HQFHANCIDPWLRQQ--GTCPVCKLRAGS 258 (274)
Q Consensus 207 ~e~~~C~ICLe~~~~~~~v~~lpCg-----H~FH~~CI~~WL~~~--~tCPlCR~~i~~ 258 (274)
++...|.||..+=..++++. =||+ .+.|.+|+.+|+.-. ..|-+|+.++.=
T Consensus 10 ~d~~~CRICr~e~~~d~pLf-hPCKC~GSIkYiH~eCL~eW~~~s~~~kCdiChy~~~F 67 (1175)
T COG5183 10 EDKRSCRICRTEDIRDDPLF-HPCKCSGSIKYIHRECLMEWMECSGTKKCDICHYEYKF 67 (1175)
T ss_pred ccchhceeecCCCCCCCcCc-ccccccchhHHHHHHHHHHHHhcCCCcceeeecceeee
Confidence 45579999998876665543 4553 357999999999754 469999887653
No 105
>COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]
Probab=85.88 E-value=0.44 Score=42.79 Aligned_cols=47 Identities=26% Similarity=0.657 Sum_probs=35.2
Q ss_pred Ccccccccccc-cccCCe-eEEeC-CCCccChhhHHHHHhcCC-CCc--cccc
Q 024005 208 DELTCTVCLEQ-VNVGEI-VRSLP-CLHQFHANCIDPWLRQQG-TCP--VCKL 254 (274)
Q Consensus 208 e~~~C~ICLe~-~~~~~~-v~~lp-CgH~FH~~CI~~WL~~~~-tCP--lCR~ 254 (274)
.+..|+||..+ |..++. +.+-| |-|..|.+|+++-+.... .|| -|-+
T Consensus 9 ~d~~CPvCksDrYLnPdik~linPECyHrmCESCvdRIFs~GpAqCP~~gC~k 61 (314)
T COG5220 9 EDRRCPVCKSDRYLNPDIKILINPECYHRMCESCVDRIFSRGPAQCPYKGCGK 61 (314)
T ss_pred hcccCCccccccccCCCeEEEECHHHHHHHHHHHHHHHhcCCCCCCCCccHHH
Confidence 34589999876 445553 44456 999999999999987754 799 7854
No 106
>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=85.57 E-value=0.66 Score=44.39 Aligned_cols=46 Identities=22% Similarity=0.425 Sum_probs=39.0
Q ss_pred CCcccccccccccccCCeeEEeCCCCccChhhHHHHHhcCC---CCccc
Q 024005 207 EDELTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQQG---TCPVC 252 (274)
Q Consensus 207 ~e~~~C~ICLe~~~~~~~v~~lpCgH~FH~~CI~~WL~~~~---tCPlC 252 (274)
.....|||=.+.-...++...|.|||+...+-|.+..+... .||.|
T Consensus 332 HSvF~CPVlKeqtsdeNPPm~L~CGHVISkdAlnrLS~ng~~sfKCPYC 380 (394)
T KOG2817|consen 332 HSVFICPVLKEQTSDENPPMMLICGHVISKDALNRLSKNGSQSFKCPYC 380 (394)
T ss_pred cceeecccchhhccCCCCCeeeeccceecHHHHHHHhhCCCeeeeCCCC
Confidence 45678999999888888889999999999999999765433 59999
No 107
>KOG3800 consensus Predicted E3 ubiquitin ligase containing RING finger, subunit of transcription/repair factor TFIIH and CDK-activating kinase assembly factor [Posttranslational modification, protein turnover, chaperones]
Probab=84.97 E-value=0.75 Score=42.34 Aligned_cols=46 Identities=20% Similarity=0.509 Sum_probs=33.4
Q ss_pred ccccccccc-ccCCe-eEEeCCCCccChhhHHHHHhcC-CCCccccccc
Q 024005 211 TCTVCLEQV-NVGEI-VRSLPCLHQFHANCIDPWLRQQ-GTCPVCKLRA 256 (274)
Q Consensus 211 ~C~ICLe~~-~~~~~-v~~lpCgH~FH~~CI~~WL~~~-~tCPlCR~~i 256 (274)
.|++|..+. ..++. ..+-+|+|..|.+|++.-+..+ ..||.|-..+
T Consensus 2 ~Cp~CKt~~Y~np~lk~~in~C~H~lCEsCvd~iF~~g~~~CpeC~~iL 50 (300)
T KOG3800|consen 2 ACPKCKTDRYLNPDLKLMINECGHRLCESCVDRIFSLGPAQCPECMVIL 50 (300)
T ss_pred CCcccccceecCccceeeeccccchHHHHHHHHHHhcCCCCCCcccchh
Confidence 599998663 34443 2233699999999999987654 5799996644
No 108
>KOG3899 consensus Uncharacterized conserved protein [Function unknown]
Probab=84.64 E-value=0.46 Score=43.82 Aligned_cols=30 Identities=17% Similarity=0.500 Sum_probs=23.2
Q ss_pred CCCccChhhHHHHHh-------------cCCCCccccccccCC
Q 024005 230 CLHQFHANCIDPWLR-------------QQGTCPVCKLRAGSG 259 (274)
Q Consensus 230 CgH~FH~~CI~~WL~-------------~~~tCPlCR~~i~~~ 259 (274)
|....|.+|+.+|+. ++.+||.||++++-.
T Consensus 325 crp~wc~~cla~~f~~rq~~v~r~~~~~~~~~cp~cr~~fci~ 367 (381)
T KOG3899|consen 325 CRPLWCRSCLAQIFIGRQDNVYRYEYHRGSAQCPTCRKNFCIR 367 (381)
T ss_pred cccHHHHHHHHHHHhhcccchhHHHHHhcCCCCcchhhceEEe
Confidence 456788999999973 355899999987643
No 109
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=84.47 E-value=0.36 Score=46.46 Aligned_cols=38 Identities=21% Similarity=0.640 Sum_probs=28.4
Q ss_pred Ccccccccc-cccccCCeeEEeCCCCccChhhHHHHHhc
Q 024005 208 DELTCTVCL-EQVNVGEIVRSLPCLHQFHANCIDPWLRQ 245 (274)
Q Consensus 208 e~~~C~ICL-e~~~~~~~v~~lpCgH~FH~~CI~~WL~~ 245 (274)
...+|.||. +.....+......|+|.||.+|+.+.+..
T Consensus 145 ~~~~C~iC~~e~~~~~~~f~~~~C~H~fC~~C~k~~iev 183 (384)
T KOG1812|consen 145 PKEECGICFVEDPEAEDMFSVLKCGHRFCKDCVKQHIEV 183 (384)
T ss_pred ccccCccCccccccHhhhHHHhcccchhhhHHhHHHhhh
Confidence 356899999 44444344445669999999999998864
No 110
>KOG3161 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=84.06 E-value=0.27 Score=49.67 Aligned_cols=45 Identities=29% Similarity=0.540 Sum_probs=32.9
Q ss_pred CcccccccccccccCC-eeEEeCCCCccChhhHHHHHhcCCCCcccccc
Q 024005 208 DELTCTVCLEQVNVGE-IVRSLPCLHQFHANCIDPWLRQQGTCPVCKLR 255 (274)
Q Consensus 208 e~~~C~ICLe~~~~~~-~v~~lpCgH~FH~~CI~~WL~~~~tCPlCR~~ 255 (274)
+...|.||+..|.... .-+.+-|||..|..|+..- -+.+|| |++.
T Consensus 10 ~~l~c~ic~n~f~~~~~~Pvsl~cghtic~~c~~~l--yn~scp-~~~D 55 (861)
T KOG3161|consen 10 LLLLCDICLNLFVVQRLEPVSLQCGHTICGHCVQLL--YNASCP-TKRD 55 (861)
T ss_pred HHhhchHHHHHHHHHhcCcccccccchHHHHHHHhH--hhccCC-CCcc
Confidence 5568999998887653 2234559999999998764 356788 6554
No 111
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=83.09 E-value=0.67 Score=47.99 Aligned_cols=52 Identities=19% Similarity=0.301 Sum_probs=37.1
Q ss_pred CCcccccccccccccC-CeeEEeC---CCCccChhhHHHHHhc------CCCCccccccccC
Q 024005 207 EDELTCTVCLEQVNVG-EIVRSLP---CLHQFHANCIDPWLRQ------QGTCPVCKLRAGS 258 (274)
Q Consensus 207 ~e~~~C~ICLe~~~~~-~~v~~lp---CgH~FH~~CI~~WL~~------~~tCPlCR~~i~~ 258 (274)
-+..+|.||.-++..+ +..-.+| |+|.||..||..|+.+ +..|+.|+..+..
T Consensus 94 a~s~Ss~~C~~E~S~~~ds~~i~P~~~~~~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~s 155 (1134)
T KOG0825|consen 94 AESDTSPVCEKEHSPDVDSSNICPVQTHVENQCPNCLKSCNDQLEESEKHTAHYFCEECVGS 155 (1134)
T ss_pred ccccccchhheecCCcccccCcCchhhhhhhhhhHHHHHHHHHhhccccccccccHHHHhhh
Confidence 3556778887777652 2223444 9999999999999865 3468999887654
No 112
>KOG1829 consensus Uncharacterized conserved protein, contains C1, PH and RUN domains [Signal transduction mechanisms]
Probab=82.45 E-value=0.43 Score=48.06 Aligned_cols=43 Identities=26% Similarity=0.740 Sum_probs=27.8
Q ss_pred Ccccccccccc-----cccCCeeEEeCCCCccChhhHHHHHhcCCCCcccc
Q 024005 208 DELTCTVCLEQ-----VNVGEIVRSLPCLHQFHANCIDPWLRQQGTCPVCK 253 (274)
Q Consensus 208 e~~~C~ICLe~-----~~~~~~v~~lpCgH~FH~~CI~~WL~~~~tCPlCR 253 (274)
....|.||... |......++..|+++||..|... ++..||.|-
T Consensus 510 ~gfiCe~Cq~~~iiyPF~~~~~~rC~~C~avfH~~C~~r---~s~~CPrC~ 557 (580)
T KOG1829|consen 510 KGFICELCQHNDIIYPFETRNTRRCSTCLAVFHKKCLRR---KSPCCPRCE 557 (580)
T ss_pred CeeeeeeccCCCcccccccccceeHHHHHHHHHHHHHhc---cCCCCCchH
Confidence 34578888432 22223345566999999999543 455699993
No 113
>KOG3053 consensus Uncharacterized conserved protein [Function unknown]
Probab=80.87 E-value=0.68 Score=41.98 Aligned_cols=50 Identities=24% Similarity=0.692 Sum_probs=33.5
Q ss_pred CCcccccccccccccCCe-eEEeCC-----CCccChhhHHHHHhcCC--------CCccccccc
Q 024005 207 EDELTCTVCLEQVNVGEI-VRSLPC-----LHQFHANCIDPWLRQQG--------TCPVCKLRA 256 (274)
Q Consensus 207 ~e~~~C~ICLe~~~~~~~-v~~lpC-----gH~FH~~CI~~WL~~~~--------tCPlCR~~i 256 (274)
+.+..|=||+..=+.... .-.-|| .|-.|..|+..|+..+. +||-|+...
T Consensus 18 e~eR~CWiCF~TdeDn~~a~WV~PCrCRGt~KWVHqsCL~rWiDEK~~~n~~q~V~C~QCqTEY 81 (293)
T KOG3053|consen 18 ELERCCWICFATDEDNRLAAWVHPCRCRGTTKWVHQSCLSRWIDEKQRGNPLQTVSCPQCQTEY 81 (293)
T ss_pred ccceeEEEEeccCcccchhhhcccccccCccHHHHHHHHHHHHhHHhcCCCCceeechhhcchh
Confidence 466789999987443211 113455 36789999999995322 599998754
No 114
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=80.18 E-value=1.2 Score=44.76 Aligned_cols=51 Identities=29% Similarity=0.709 Sum_probs=40.6
Q ss_pred CCcccccccccccccCCeeEEeCCCCccChhhHHHHHhcCCCCccccccccCCCCCCC
Q 024005 207 EDELTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQQGTCPVCKLRAGSGWHETR 264 (274)
Q Consensus 207 ~e~~~C~ICLe~~~~~~~v~~lpCgH~FH~~CI~~WL~~~~tCPlCR~~i~~~~~~~~ 264 (274)
+....|.||+++. ..+..+|. |..|+.+|+..+..||+|+.....+.....
T Consensus 477 ~~~~~~~~~~~~~----~~~~~~~~---~~~~l~~~~~~~~~~pl~~~~~~~~~~~~~ 527 (543)
T KOG0802|consen 477 EPNDVCAICYQEM----SARITPCS---HALCLRKWLYVQEVCPLCHTYMKEDDFLSK 527 (543)
T ss_pred cccCcchHHHHHH----Hhcccccc---chhHHHhhhhhccccCCCchhhhcccccCc
Confidence 4567899999998 23667788 899999999999999999887765544443
No 115
>KOG4362 consensus Transcriptional regulator BRCA1 [Replication, recombination and repair; Transcription]
Probab=77.46 E-value=0.58 Score=47.85 Aligned_cols=47 Identities=30% Similarity=0.656 Sum_probs=37.3
Q ss_pred CcccccccccccccCCeeEEeCCCCccChhhHHHHHhc---CCCCcccccccc
Q 024005 208 DELTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQ---QGTCPVCKLRAG 257 (274)
Q Consensus 208 e~~~C~ICLe~~~~~~~v~~lpCgH~FH~~CI~~WL~~---~~tCPlCR~~i~ 257 (274)
-..+|+||.+.+..+ ..+.|.|.|+..|+..-+.. ...||+|+..+.
T Consensus 20 k~lEc~ic~~~~~~p---~~~kc~~~~l~~~~n~~f~~~~~~~~~~lc~~~~e 69 (684)
T KOG4362|consen 20 KILECPICLEHVKEP---SLLKCDHIFLKFCLNKLFESKKGPKQCALCKSDIE 69 (684)
T ss_pred hhccCCceeEEeecc---chhhhhHHHHhhhhhceeeccCccccchhhhhhhh
Confidence 355899999999977 67889999999998775543 347999986554
No 116
>KOG4718 consensus Non-SMC (structural maintenance of chromosomes) element 1 protein (NSE1) [Chromatin structure and dynamics]
Probab=77.15 E-value=1.2 Score=39.20 Aligned_cols=45 Identities=31% Similarity=0.777 Sum_probs=37.1
Q ss_pred CCcccccccccccccCCeeEEeCCCCccChhhHHHHHhcCCCCcccc
Q 024005 207 EDELTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQQGTCPVCK 253 (274)
Q Consensus 207 ~e~~~C~ICLe~~~~~~~v~~lpCgH~FH~~CI~~WL~~~~tCPlCR 253 (274)
+....|.+|..-...+ +++=.|+-.+|..|+...+++...||.|.
T Consensus 179 dnlk~Cn~Ch~LvIqg--~rCg~c~i~~h~~c~qty~q~~~~cphc~ 223 (235)
T KOG4718|consen 179 DNLKNCNLCHCLVIQG--IRCGSCNIQYHRGCIQTYLQRRDICPHCG 223 (235)
T ss_pred HHHHHHhHhHHHhhee--eccCcccchhhhHHHHHHhcccCcCCchh
Confidence 3456899999988765 34455888899999999999999999993
No 117
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=75.22 E-value=2.3 Score=43.92 Aligned_cols=41 Identities=27% Similarity=0.514 Sum_probs=30.9
Q ss_pred ccccccccccccCCeeEEeCCCCccChhhHHHHHhcCCCCcc
Q 024005 210 LTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQQGTCPV 251 (274)
Q Consensus 210 ~~C~ICLe~~~~~~~v~~lpCgH~FH~~CI~~WL~~~~tCPl 251 (274)
..|.+|-..+. |..+-.--|+|.-|.+|+.+|+..+.-||.
T Consensus 780 ~~CtVC~~vi~-G~~~~c~~C~H~gH~sh~~sw~~~~s~ca~ 820 (839)
T KOG0269|consen 780 AKCTVCDLVIR-GVDVWCQVCGHGGHDSHLKSWFFKASPCAK 820 (839)
T ss_pred cCceeecceee-eeEeecccccccccHHHHHHHHhcCCCCcc
Confidence 37888865544 333333339999999999999999998877
No 118
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=74.03 E-value=1.5 Score=42.19 Aligned_cols=44 Identities=27% Similarity=0.534 Sum_probs=31.8
Q ss_pred cccccccccccccCCe--eEEeCCCCccChhhHHHHHhcCCCCccc
Q 024005 209 ELTCTVCLEQVNVGEI--VRSLPCLHQFHANCIDPWLRQQGTCPVC 252 (274)
Q Consensus 209 ~~~C~ICLe~~~~~~~--v~~lpCgH~FH~~CI~~WL~~~~tCPlC 252 (274)
-..|++|.-.+.-.+. ...-.|||.||..|...|...+..|..|
T Consensus 306 wr~CpkC~~~ie~~~GCnhm~CrC~~~fcy~C~~~~~~~~~~~~~~ 351 (384)
T KOG1812|consen 306 WRQCPKCKFMIELSEGCNHMTCRCGHQFCYMCGGDWKTHNGECYEC 351 (384)
T ss_pred cCcCcccceeeeecCCcceEEeeccccchhhcCcchhhCCccccCc
Confidence 4468888776654432 2223389999999999998888888666
No 119
>PF07123 PsbW: Photosystem II reaction centre W protein (PsbW); InterPro: IPR009806 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbW found in PSII, where it is a subunit of the oxygen-evolving complex. PsbW appears to have several roles, including guiding PSII biogenesis and assembly, stabilising dimeric PSII [], and facilitating PSII repair after photo-inhibition []. There appears to be two classes of PsbW, class 1 being found predominantly in algae and cyanobacteria, and class 2 being found predominantly in plants. This entry represents class 2 PsbW.; GO: 0015979 photosynthesis, 0009507 chloroplast, 0009523 photosystem II
Probab=69.43 E-value=4.1 Score=33.50 Aligned_cols=26 Identities=46% Similarity=0.660 Sum_probs=22.4
Q ss_pred CCchhHHHHHHHHHHHHHHhhhHHHH
Q 024005 56 QMSSNFLLWIVLGIFLLATSLRMYAT 81 (274)
Q Consensus 56 ~~~~~~~~~~~~~~f~~a~~l~~y~~ 81 (274)
-++.|.|-||++|||.+.-+|+..++
T Consensus 100 Glsn~~LgwIL~gVf~lIWslY~~~~ 125 (138)
T PF07123_consen 100 GLSNNLLGWILLGVFGLIWSLYFVYT 125 (138)
T ss_pred cccCchhHHHHHHHHHHHHHHHHhhc
Confidence 46889999999999999998876655
No 120
>PF13901 DUF4206: Domain of unknown function (DUF4206)
Probab=68.96 E-value=3.4 Score=36.15 Aligned_cols=41 Identities=27% Similarity=0.771 Sum_probs=27.8
Q ss_pred cccccccccc-----cccCCeeEEeCCCCccChhhHHHHHhcCCCCccccc
Q 024005 209 ELTCTVCLEQ-----VNVGEIVRSLPCLHQFHANCIDPWLRQQGTCPVCKL 254 (274)
Q Consensus 209 ~~~C~ICLe~-----~~~~~~v~~lpCgH~FH~~CI~~WL~~~~tCPlCR~ 254 (274)
+..|-||-.+ |......+.-.|+.+||..|.. +..||.|..
T Consensus 152 GfiCe~C~~~~~IfPF~~~~~~~C~~C~~v~H~~C~~-----~~~CpkC~R 197 (202)
T PF13901_consen 152 GFICEICNSDDIIFPFQIDTTVRCPKCKSVFHKSCFR-----KKSCPKCAR 197 (202)
T ss_pred CCCCccCCCCCCCCCCCCCCeeeCCcCccccchhhcC-----CCCCCCcHh
Confidence 4578888643 3333344455599999999964 267999944
No 121
>KOG1815 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=67.99 E-value=2.8 Score=41.04 Aligned_cols=36 Identities=25% Similarity=0.621 Sum_probs=30.0
Q ss_pred CcccccccccccccCCeeEEeCCCCccChhhHHHHHhc
Q 024005 208 DELTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQ 245 (274)
Q Consensus 208 e~~~C~ICLe~~~~~~~v~~lpCgH~FH~~CI~~WL~~ 245 (274)
....|.||.+.+.. ....+.|+|.||..|+...+.+
T Consensus 69 ~~~~c~ic~~~~~~--~~~~~~c~H~~c~~cw~~yl~~ 104 (444)
T KOG1815|consen 69 GDVQCGICVESYDG--EIIGLGCGHPFCPPCWTGYLGT 104 (444)
T ss_pred ccccCCcccCCCcc--hhhhcCCCcHHHHHHHHHHhhh
Confidence 45589999999875 4567889999999999998865
No 122
>PF02891 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR004181 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MIZ-type zinc finger domains. Miz1 (Msx-interacting-zinc finger) is a zinc finger-containing protein with homology to the yeast protein, Nfi-1. Miz1 is a sequence specific DNA binding protein that can function as a positive-acting transcription factor. Miz1 binds to the homeobox protein Msx2, enhancing the specific DNA-binding ability of Msx2 []. Other proteins containing this domain include the human pias family (protein inhibitor of activated STAT protein). More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3I2D_A.
Probab=65.02 E-value=2.8 Score=28.38 Aligned_cols=43 Identities=23% Similarity=0.652 Sum_probs=20.4
Q ss_pred ccccccccccccCCeeEEeCCCCccChhhHHHHHhcC-----CCCcccccc
Q 024005 210 LTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQQ-----GTCPVCKLR 255 (274)
Q Consensus 210 ~~C~ICLe~~~~~~~v~~lpCgH~FH~~CI~~WL~~~-----~tCPlCR~~ 255 (274)
..|+|....+.. .++...|.|.-|.+ +..||..+ -.||+|.++
T Consensus 3 L~CPls~~~i~~--P~Rg~~C~H~~CFD-l~~fl~~~~~~~~W~CPiC~~~ 50 (50)
T PF02891_consen 3 LRCPLSFQRIRI--PVRGKNCKHLQCFD-LESFLESNQRTPKWKCPICNKP 50 (50)
T ss_dssp SB-TTTSSB-SS--EEEETT--SS--EE-HHHHHHHHHHS---B-TTT---
T ss_pred eeCCCCCCEEEe--CccCCcCcccceEC-HHHHHHHhhccCCeECcCCcCc
Confidence 468888888764 45667799974422 44565432 269999863
No 123
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=64.95 E-value=5.7 Score=37.33 Aligned_cols=56 Identities=18% Similarity=0.456 Sum_probs=39.5
Q ss_pred CcccccccccccccCC-eeEEeCCCCccChhhHHHHHhcCCCCccccccccCCCCCC
Q 024005 208 DELTCTVCLEQVNVGE-IVRSLPCLHQFHANCIDPWLRQQGTCPVCKLRAGSGWHET 263 (274)
Q Consensus 208 e~~~C~ICLe~~~~~~-~v~~lpCgH~FH~~CI~~WL~~~~tCPlCR~~i~~~~~~~ 263 (274)
-...|+||-+.....+ ...-.||++..|..|+..-...+.+||.||++...+....
T Consensus 248 v~~s~p~~~~~~~~~d~~~lP~~~~~~~~l~~~~t~~~~~~~~~~~rk~~~~~t~~s 304 (327)
T KOG2068|consen 248 VPPSCPICYEDLDLTDSNFLPCPCGFRLCLFCHKTISDGDGRCPGCRKPYERNTKKS 304 (327)
T ss_pred cCCCCCCCCCcccccccccccccccccchhhhhhcccccCCCCCccCCccccCcccc
Confidence 3468999999874332 2223447888888888887778899999998776554433
No 124
>KOG3579 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=64.37 E-value=5.2 Score=36.96 Aligned_cols=38 Identities=32% Similarity=0.649 Sum_probs=30.4
Q ss_pred CCcccccccccccccCCeeEEeCC----CCccChhhHHHHHhcCC
Q 024005 207 EDELTCTVCLEQVNVGEIVRSLPC----LHQFHANCIDPWLRQQG 247 (274)
Q Consensus 207 ~e~~~C~ICLe~~~~~~~v~~lpC----gH~FH~~CI~~WL~~~~ 247 (274)
...+.|.+|.|.++.. ....| .|.||..|-++-++++.
T Consensus 266 ~apLcCTLC~ERLEDT---HFVQCPSVp~HKFCFPCSResIK~Qg 307 (352)
T KOG3579|consen 266 SAPLCCTLCHERLEDT---HFVQCPSVPSHKFCFPCSRESIKQQG 307 (352)
T ss_pred CCceeehhhhhhhccC---ceeecCCCcccceecccCHHHHHhhc
Confidence 4568999999999866 34445 79999999999998754
No 125
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=63.98 E-value=2.8 Score=38.96 Aligned_cols=54 Identities=22% Similarity=0.455 Sum_probs=42.3
Q ss_pred CCcccccccccccccCCeeEEeCCCCccChhhHHHHHhcCCCCccccccccCCCCC
Q 024005 207 EDELTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQQGTCPVCKLRAGSGWHE 262 (274)
Q Consensus 207 ~e~~~C~ICLe~~~~~~~v~~lpCgH~FH~~CI~~WL~~~~tCPlCR~~i~~~~~~ 262 (274)
.+...|-||...+..+.. .-.|.|.|+..|-..|......||.|+..+......
T Consensus 103 ~~~~~~~~~~g~l~vpt~--~qg~w~qf~~~~p~~~~~~~~~~~d~~~~~~pv~aG 156 (324)
T KOG0824|consen 103 QDHDICYICYGKLTVPTR--IQGCWHQFCYVCPKSNFAMGNDCPDCRGKISPVLAG 156 (324)
T ss_pred CCccceeeeeeeEEeccc--ccCceeeeeecCCchhhhhhhccchhhcCcCceecc
Confidence 355689999998876621 223999999999999999999999999877655443
No 126
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=62.58 E-value=3.3 Score=43.02 Aligned_cols=45 Identities=22% Similarity=0.444 Sum_probs=32.7
Q ss_pred CCcccccccccccccC----CeeEEeCCCCccChhhHHHHHhcCCCCccc
Q 024005 207 EDELTCTVCLEQVNVG----EIVRSLPCLHQFHANCIDPWLRQQGTCPVC 252 (274)
Q Consensus 207 ~e~~~C~ICLe~~~~~----~~v~~lpCgH~FH~~CI~~WL~~~~tCPlC 252 (274)
..+..|.-|.+..... +.+..+.|+|.||..|+.--..++. |-.|
T Consensus 782 ~~e~rc~~c~~~~l~~~~~~~~~~v~~c~h~yhk~c~~~~~~~~~-~~~~ 830 (846)
T KOG2066|consen 782 SVEERCSSCFEPNLPSGAAFDSVVVFHCGHMYHKECLMMESLRNA-CNIE 830 (846)
T ss_pred eehhhhhhhcccccccCcccceeeEEEccchhhhcccccHHHhcc-cChh
Confidence 3455899999887533 4677888999999999876554444 5555
No 127
>PF06844 DUF1244: Protein of unknown function (DUF1244); InterPro: IPR009654 This family consists of several short bacterial proteins of around 100 residues in length. The function of this family is unknown.; PDB: 2O35_A 3FYB_B.
Probab=61.57 E-value=4.8 Score=29.02 Aligned_cols=12 Identities=42% Similarity=1.137 Sum_probs=8.8
Q ss_pred ccChhhHHHHHh
Q 024005 233 QFHANCIDPWLR 244 (274)
Q Consensus 233 ~FH~~CI~~WL~ 244 (274)
-||.+|+.+|++
T Consensus 11 gFCRNCLskWy~ 22 (68)
T PF06844_consen 11 GFCRNCLSKWYR 22 (68)
T ss_dssp S--HHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 499999999985
No 128
>PLN02189 cellulose synthase
Probab=60.79 E-value=13 Score=40.23 Aligned_cols=51 Identities=22% Similarity=0.503 Sum_probs=34.5
Q ss_pred Ccccccccccccc---cCCeeEEeC-CCCccChhhHHHHH-hcCCCCccccccccC
Q 024005 208 DELTCTVCLEQVN---VGEIVRSLP-CLHQFHANCIDPWL-RQQGTCPVCKLRAGS 258 (274)
Q Consensus 208 e~~~C~ICLe~~~---~~~~v~~lp-CgH~FH~~CI~~WL-~~~~tCPlCR~~i~~ 258 (274)
....|.||-+++. .|+.-+... |+--.|..|.+-=- ..++.||-||+....
T Consensus 33 ~~~~C~iCgd~vg~~~~g~~fvaC~~C~fpvCr~Cyeyer~eg~q~CpqCkt~Y~r 88 (1040)
T PLN02189 33 DGQVCEICGDEIGLTVDGDLFVACNECGFPVCRPCYEYERREGTQNCPQCKTRYKR 88 (1040)
T ss_pred cCccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCcccCCchhh
Confidence 4458999999975 333333333 77778999984322 235689999998763
No 129
>PLN00077 photosystem II reaction centre W protein; Provisional
Probab=60.68 E-value=6 Score=31.74 Aligned_cols=26 Identities=46% Similarity=0.622 Sum_probs=21.8
Q ss_pred CCchhHHHHHHHHHHHHHHhhhHHHH
Q 024005 56 QMSSNFLLWIVLGIFLLATSLRMYAT 81 (274)
Q Consensus 56 ~~~~~~~~~~~~~~f~~a~~l~~y~~ 81 (274)
-++.|.|-||++|||.+.-+++.+++
T Consensus 89 Glsn~~LgwIL~gVf~liw~ly~~~~ 114 (128)
T PLN00077 89 GLSNNLLGWILLGVFGLIWSLYTTYT 114 (128)
T ss_pred cccCchhhHHHHhHHHHHHHHHhhee
Confidence 46889999999999999988776654
No 130
>smart00249 PHD PHD zinc finger. The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the PF11241 DUF3043: Protein of unknown function (DUF3043); InterPro: IPR021403 Some members in this family of proteins with unknown function are annotated as membrane proteins. This cannot be confirmed.
Probab=58.31 E-value=12 Score=31.97 Aligned_cols=10 Identities=50% Similarity=0.361 Sum_probs=7.4
Q ss_pred CcCccccccc
Q 024005 20 IPERRTVRIH 29 (274)
Q Consensus 20 ~~~~~~~~~~ 29 (274)
-|+|+.+|--
T Consensus 61 GP~Rr~vRD~ 70 (170)
T PF11241_consen 61 GPVRRYVRDY 70 (170)
T ss_pred cchhhhhhhh
Confidence 3788888865
No 132
>COG5416 Uncharacterized integral membrane protein [Function unknown]
Probab=55.66 E-value=31 Score=26.78 Aligned_cols=26 Identities=23% Similarity=0.554 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHhccCCCchhHHHHH
Q 024005 40 AFLVTVLLLFMILNSHQMSSNFLLWI 65 (274)
Q Consensus 40 ~~l~~~~~~~~~~~~~~~~~~~~~~~ 65 (274)
++++.++++|.+.|...++-||+.|.
T Consensus 31 ilillLllifav~Nt~~V~~~~lfg~ 56 (98)
T COG5416 31 ILILLLLLIFAVINTDSVEFNYLFGQ 56 (98)
T ss_pred HHHHHHHHHHHHhccCceEEEeecch
Confidence 34455566899999999999999886
No 133
>KOG3005 consensus GIY-YIG type nuclease [General function prediction only]
Probab=54.66 E-value=6.7 Score=35.88 Aligned_cols=47 Identities=26% Similarity=0.634 Sum_probs=33.0
Q ss_pred cccccccccccccCCeeEE-e--C-CCCccChhhHHHHHhc---------CCCCcccccc
Q 024005 209 ELTCTVCLEQVNVGEIVRS-L--P-CLHQFHANCIDPWLRQ---------QGTCPVCKLR 255 (274)
Q Consensus 209 ~~~C~ICLe~~~~~~~v~~-l--p-CgH~FH~~CI~~WL~~---------~~tCPlCR~~ 255 (274)
...|-+|..++...+..+. - | |.-.+|..|+..-+.. ...||.|++.
T Consensus 182 ~~~celc~~ei~e~~~~~a~c~~~~c~~~~h~~CLa~~~~~~e~g~~~p~eg~cp~C~~~ 241 (276)
T KOG3005|consen 182 NVECELCEKEILETDWSRATCPNPDCDSLNHLTCLAEELLEVEPGQLIPLEGMCPKCEKF 241 (276)
T ss_pred chhhHHHHHHhccccceeccCCCCCCCchhhhhhhhHHHhccCCCceeccCCCCCchhce
Confidence 4589999999954443222 1 2 8889999999985432 3579999873
No 134
>PLN02436 cellulose synthase A
Probab=54.44 E-value=19 Score=39.09 Aligned_cols=50 Identities=24% Similarity=0.504 Sum_probs=34.2
Q ss_pred Ccccccccccccc---cCCeeEEeC-CCCccChhhHHHHH-hcCCCCcccccccc
Q 024005 208 DELTCTVCLEQVN---VGEIVRSLP-CLHQFHANCIDPWL-RQQGTCPVCKLRAG 257 (274)
Q Consensus 208 e~~~C~ICLe~~~---~~~~v~~lp-CgH~FH~~CI~~WL-~~~~tCPlCR~~i~ 257 (274)
....|-||-+++. .|+.-+... |+--.|..|.+-=- ..++.||-||+...
T Consensus 35 ~~~iCqICGD~Vg~t~dGe~FVACn~C~fpvCr~Cyeyer~eg~~~Cpqckt~Y~ 89 (1094)
T PLN02436 35 SGQTCQICGDEIELTVDGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYK 89 (1094)
T ss_pred CCccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCcccCCchh
Confidence 4458999999974 344433333 77778999984322 23568999999876
No 135
>COG5109 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=54.43 E-value=9.5 Score=35.79 Aligned_cols=45 Identities=24% Similarity=0.445 Sum_probs=35.5
Q ss_pred CCcccccccccccccCCeeEEeCCCCccChhhHHHHHhcCC----CCccc
Q 024005 207 EDELTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQQG----TCPVC 252 (274)
Q Consensus 207 ~e~~~C~ICLe~~~~~~~v~~lpCgH~FH~~CI~~WL~~~~----tCPlC 252 (274)
.....|++=-+.-...+....+.|||+.-.+-+++. .+++ .||.|
T Consensus 334 Hs~FiCPVlKe~~t~ENpP~ml~CgHVIskeal~~L-S~nG~~~FKCPYC 382 (396)
T COG5109 334 HSLFICPVLKELCTDENPPVMLECGHVISKEALSVL-SQNGVLSFKCPYC 382 (396)
T ss_pred cceeeccccHhhhcccCCCeeeeccceeeHHHHHHH-hhcCcEEeeCCCC
Confidence 456689987777776677788999999999998884 4443 59999
No 136
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=53.85 E-value=11 Score=34.29 Aligned_cols=34 Identities=15% Similarity=0.133 Sum_probs=29.9
Q ss_pred CCcccccccccccccCCeeEEeCCCCccChhhHHHHH
Q 024005 207 EDELTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWL 243 (274)
Q Consensus 207 ~e~~~C~ICLe~~~~~~~v~~lpCgH~FH~~CI~~WL 243 (274)
.+-+.|+.||..+..+ .+.|=||+|+.+||-+.+
T Consensus 41 K~FdcCsLtLqPc~dP---vit~~GylfdrEaILe~i 74 (303)
T KOG3039|consen 41 KPFDCCSLTLQPCRDP---VITPDGYLFDREAILEYI 74 (303)
T ss_pred CCcceeeeecccccCC---ccCCCCeeeeHHHHHHHH
Confidence 4667899999999877 778889999999999986
No 137
>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the PHD (homeodomain) zinc finger domain [,], which is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in chromatin-mediated transcriptional regulation. The PHD finger motif is reminiscent of, but distinct from the C3HC4 type RING finger. The function of this domain is not yet known but in analogy with the LIM domain it could be involved in protein-protein interaction and be important for the assembly or activity of multicomponent complexes involved in transcriptional activation or repression. Alternatively, the interactions could be intra-molecular and be important in maintaining the structural integrity of the protein. In similarity to the RING finger and the LIM domain, the PHD finger is thought to bind two zinc ions. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0005515 protein binding; PDB: 3ZVY_A 2LGG_A 3SOW_A 3SOU_B 3ASL_A 3ASK_A 3ZVZ_B 3T6R_A 2LGK_A 3SOX_B ....
Probab=53.71 E-value=7.1 Score=25.77 Aligned_cols=43 Identities=26% Similarity=0.709 Sum_probs=30.1
Q ss_pred ccccccccccCCeeEEeCCCCccChhhHHHHHh------cCCCCccccc
Q 024005 212 CTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLR------QQGTCPVCKL 254 (274)
Q Consensus 212 C~ICLe~~~~~~~v~~lpCgH~FH~~CI~~WL~------~~~tCPlCR~ 254 (274)
|.||...-..++.+..-.|+..||..|+..=.. ..-.||.|+.
T Consensus 2 C~vC~~~~~~~~~i~C~~C~~~~H~~C~~~~~~~~~~~~~~w~C~~C~~ 50 (51)
T PF00628_consen 2 CPVCGQSDDDGDMIQCDSCNRWYHQECVGPPEKAEEIPSGDWYCPNCRP 50 (51)
T ss_dssp BTTTTSSCTTSSEEEBSTTSCEEETTTSTSSHSHHSHHSSSBSSHHHHH
T ss_pred CcCCCCcCCCCCeEEcCCCChhhCcccCCCChhhccCCCCcEECcCCcC
Confidence 889988555555555566999999999876443 1336888854
No 138
>PLN00092 photosystem I reaction center subunit V (PsaG); Provisional
Probab=52.66 E-value=7.5 Score=31.50 Aligned_cols=26 Identities=46% Similarity=0.660 Sum_probs=21.8
Q ss_pred CCchhHHHHHHHHHHHHHHhhhHHHH
Q 024005 56 QMSSNFLLWIVLGIFLLATSLRMYAT 81 (274)
Q Consensus 56 ~~~~~~~~~~~~~~f~~a~~l~~y~~ 81 (274)
-++.|.|-||++|||.+..+++.+++
T Consensus 99 Glsn~~LgwIL~gVf~lIWslYf~~~ 124 (137)
T PLN00092 99 GLSNNLLGWILLGVFGLIWSLYFVYT 124 (137)
T ss_pred cccCcchhhHHHhHHHHHHHHHheee
Confidence 46889999999999999988776554
No 139
>PF14569 zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A.
Probab=51.40 E-value=27 Score=26.02 Aligned_cols=51 Identities=24% Similarity=0.468 Sum_probs=19.6
Q ss_pred CcccccccccccccCC--eeEE--eCCCCccChhhHHHHHh-cCCCCccccccccC
Q 024005 208 DELTCTVCLEQVNVGE--IVRS--LPCLHQFHANCIDPWLR-QQGTCPVCKLRAGS 258 (274)
Q Consensus 208 e~~~C~ICLe~~~~~~--~v~~--lpCgH~FH~~CI~~WL~-~~~tCPlCR~~i~~ 258 (274)
....|-||=+++.... .+.. --|+--.|..|.+-=.+ .++.||-||.+...
T Consensus 8 ~~qiCqiCGD~VGl~~~Ge~FVAC~eC~fPvCr~CyEYErkeg~q~CpqCkt~ykr 63 (80)
T PF14569_consen 8 NGQICQICGDDVGLTENGEVFVACHECAFPVCRPCYEYERKEGNQVCPQCKTRYKR 63 (80)
T ss_dssp SS-B-SSS--B--B-SSSSB--S-SSS-----HHHHHHHHHTS-SB-TTT--B---
T ss_pred CCcccccccCccccCCCCCEEEEEcccCCccchhHHHHHhhcCcccccccCCCccc
Confidence 4568999999875332 2222 23777778999765443 46689999987754
No 140
>PLN00082 photosystem II reaction centre W protein (PsbW); Provisional
Probab=51.14 E-value=14 Score=26.45 Aligned_cols=24 Identities=29% Similarity=0.477 Sum_probs=19.0
Q ss_pred CCchhHHHHHHHHHHHHHHhhhHH
Q 024005 56 QMSSNFLLWIVLGIFLLATSLRMY 79 (274)
Q Consensus 56 ~~~~~~~~~~~~~~f~~a~~l~~y 79 (274)
-++.|.+-||++|||.+.-+++..
T Consensus 28 Gls~~~LgwIL~gvf~liw~ly~~ 51 (67)
T PLN00082 28 GVSNGKLTWILVGVTALIWALYFS 51 (67)
T ss_pred cccCchhhhHHHHHHHHHHHHHhh
Confidence 357788999999999888766544
No 141
>PF01363 FYVE: FYVE zinc finger; InterPro: IPR000306 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The FYVE zinc finger is named after four proteins that it has been found in: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two zinc ions []. The FYVE finger has eight potential zinc coordinating cysteine positions. Many members of this family also include two histidines in a motif R+HHC+XCG, where + represents a charged residue and X any residue. FYVE-type domains are divided into two known classes: FYVE domains that specifically bind to phosphatidylinositol 3-phosphate in lipid bilayers and FYVE-related domains of undetermined function []. Those that bind to phosphatidylinositol 3-phosphate are often found in proteins targeted to lipid membranes that are involved in regulating membrane traffic [, , ]. Most FYVE domains target proteins to endosomes by binding specifically to phosphatidylinositol-3-phosphate at the membrane surface. By contrast, the CARP2 FYVE-like domain is not optimized to bind to phosphoinositides or insert into lipid bilayers. FYVE domains are distinguished from other zinc fingers by three signature sequences: an N-terminal WxxD motif, a basic R(R/K)HHCR patch, and a C-terminal RVC motif. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0046872 metal ion binding; PDB: 1HYI_A 1JOC_B 1HYJ_A 1DVP_A 3ZYQ_A 4AVX_A 1VFY_A 3T7L_A 1X4U_A 1WFK_A ....
Probab=50.95 E-value=8.6 Score=27.17 Aligned_cols=35 Identities=11% Similarity=0.301 Sum_probs=18.0
Q ss_pred CcccccccccccccCC-eeEEeCCCCccChhhHHHH
Q 024005 208 DELTCTVCLEQVNVGE-IVRSLPCLHQFHANCIDPW 242 (274)
Q Consensus 208 e~~~C~ICLe~~~~~~-~v~~lpCgH~FH~~CI~~W 242 (274)
+...|.+|...|..-. ....-.||++||..|....
T Consensus 8 ~~~~C~~C~~~F~~~~rrhhCr~CG~~vC~~Cs~~~ 43 (69)
T PF01363_consen 8 EASNCMICGKKFSLFRRRHHCRNCGRVVCSSCSSQR 43 (69)
T ss_dssp G-SB-TTT--B-BSSS-EEE-TTT--EEECCCS-EE
T ss_pred CCCcCcCcCCcCCCceeeEccCCCCCEECCchhCCE
Confidence 4568999999996543 2233449999999997654
No 142
>PF04710 Pellino: Pellino; InterPro: IPR006800 Pellino is involved in Toll-like signalling pathways, and associates with the kinase domain of the Pelle Ser/Thr kinase [, , ].; PDB: 3EGB_B 3EGA_A.
Probab=49.55 E-value=5.5 Score=38.37 Aligned_cols=44 Identities=25% Similarity=0.486 Sum_probs=0.0
Q ss_pred cccccccccccccC-----------CeeEEeCCCCccChhhHHHHHh------cCCCCcccccc
Q 024005 209 ELTCTVCLEQVNVG-----------EIVRSLPCLHQFHANCIDPWLR------QQGTCPVCKLR 255 (274)
Q Consensus 209 ~~~C~ICLe~~~~~-----------~~v~~lpCgH~FH~~CI~~WL~------~~~tCPlCR~~ 255 (274)
..+|++=|..+.-+ +...-+.|||++..+ .|-. +..+||+||+.
T Consensus 277 rpQCPVglnTL~fp~~~~~~~~~~~qP~VYl~CGHVhG~h---~Wg~~~~~~~~~r~CPlCr~~ 337 (416)
T PF04710_consen 277 RPQCPVGLNTLVFPSKSRKDVPDERQPWVYLNCGHVHGYH---NWGQDSDRDPRSRTCPLCRQV 337 (416)
T ss_dssp ----------------------------------------------------------------
T ss_pred CCCCCcCCCccccccccccccccccCceeeccccceeeec---ccccccccccccccCCCcccc
Confidence 34677765554222 234468899987643 4653 24579999874
No 143
>KOG3113 consensus Uncharacterized conserved protein [Function unknown]
Probab=45.57 E-value=19 Score=32.82 Aligned_cols=53 Identities=15% Similarity=0.185 Sum_probs=36.4
Q ss_pred CCcccccccccccccCC-eeEEeCCCCccChhhHHHHHhcCCCCccccccccCCCC
Q 024005 207 EDELTCTVCLEQVNVGE-IVRSLPCLHQFHANCIDPWLRQQGTCPVCKLRAGSGWH 261 (274)
Q Consensus 207 ~e~~~C~ICLe~~~~~~-~v~~lpCgH~FH~~CI~~WL~~~~tCPlCR~~i~~~~~ 261 (274)
.....|+|---++.... -+...+|||+|-..-+.+. ...+|++|-..+.....
T Consensus 109 ~a~fiCPvtgleMng~~~F~~l~~CGcV~SerAlKei--kas~C~~C~a~y~~~dv 162 (293)
T KOG3113|consen 109 RARFICPVTGLEMNGKYRFCALRCCGCVFSERALKEI--KASVCHVCGAAYQEDDV 162 (293)
T ss_pred cceeecccccceecceEEEEEEeccceeccHHHHHHh--hhccccccCCcccccCe
Confidence 34568887655544322 2345679999999887774 46789999887766543
No 144
>PF07975 C1_4: TFIIH C1-like domain; InterPro: IPR004595 All proteins in this domain for which functions are known are components of the TFIIH complex which is involved in the initiation of transcription and nucleotide excision repair. It includes the yeast transcription factor Ssl1 (Suppressor of stem-loop protein 1) that is essential for translation initiation and affects UV resistance. The C-terminal region is essential for transcription activity. This regions binds three zinc atoms through two independent domain. The first contains a C4 zinc finger motif, whereas the second is characterised by a CX(2)CX(2-4)FCADCD motif. The solution structure of the second C-terminal domain revealed homology with the regulatory domain of protein kinase C [].; GO: 0006281 DNA repair, 0005634 nucleus; PDB: 1Z60_A.
Probab=45.36 E-value=12 Score=25.57 Aligned_cols=42 Identities=24% Similarity=0.494 Sum_probs=19.3
Q ss_pred ccccccccccCC------eeEEeC-CCCccChhhHHHHHhcCCCCcccc
Q 024005 212 CTVCLEQVNVGE------IVRSLP-CLHQFHANCIDPWLRQQGTCPVCK 253 (274)
Q Consensus 212 C~ICLe~~~~~~------~v~~lp-CgH~FH~~CI~~WL~~~~tCPlCR 253 (274)
|--|+..+..+. ....-| |++.||.+|=.--=..-.+||-|-
T Consensus 2 CfgC~~~~~~~~~~~~~~~~y~C~~C~~~FC~dCD~fiHE~LH~CPGC~ 50 (51)
T PF07975_consen 2 CFGCQKPFPDGPEKKADSSRYRCPKCKNHFCIDCDVFIHETLHNCPGCE 50 (51)
T ss_dssp ETTTTEE-TTS-------EEE--TTTT--B-HHHHHTTTTTS-SSSTT-
T ss_pred CccCCCCCCCcccccccCCeEECCCCCCccccCcChhhhccccCCcCCC
Confidence 455666665441 233344 999999999322113445799883
No 145
>KOG2807 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit SSL1 [Transcription; Replication, recombination and repair]
Probab=44.57 E-value=16 Score=34.43 Aligned_cols=43 Identities=21% Similarity=0.422 Sum_probs=28.6
Q ss_pred ccccccccccCCeeEEeCCCCccChhhHHHHHhcCCCCccccc
Q 024005 212 CTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQQGTCPVCKL 254 (274)
Q Consensus 212 C~ICLe~~~~~~~v~~lpCgH~FH~~CI~~WL~~~~tCPlCR~ 254 (274)
|-.|.+........+.-.|.+.||.+|=.---..-..||-|..
T Consensus 333 Cf~C~~~~~~~~~y~C~~Ck~~FCldCDv~iHesLh~CpgCeh 375 (378)
T KOG2807|consen 333 CFACQGELLSSGRYRCESCKNVFCLDCDVFIHESLHNCPGCEH 375 (378)
T ss_pred eeeeccccCCCCcEEchhccceeeccchHHHHhhhhcCCCcCC
Confidence 6666555555555555669999999994333244567999964
No 146
>smart00132 LIM Zinc-binding domain present in Lin-11, Isl-1, Mec-3. Zinc-binding domain family. Some LIM domains bind protein partners via tyrosine-containing motifs. LIM domains are found in many key regulators of developmental pathways.
Probab=44.19 E-value=27 Score=20.85 Aligned_cols=37 Identities=24% Similarity=0.564 Sum_probs=22.7
Q ss_pred cccccccccccCCeeEEeCCCCccChhhHHHHHhcCCCCccccccc
Q 024005 211 TCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQQGTCPVCKLRA 256 (274)
Q Consensus 211 ~C~ICLe~~~~~~~v~~lpCgH~FH~~CI~~WL~~~~tCPlCR~~i 256 (274)
.|..|-+.+..++.. ...=+..||..|. .|..|+..+
T Consensus 1 ~C~~C~~~i~~~~~~-~~~~~~~~H~~Cf--------~C~~C~~~L 37 (39)
T smart00132 1 KCAGCGKPIRGGELV-LRALGKVWHPECF--------KCSKCGKPL 37 (39)
T ss_pred CccccCCcccCCcEE-EEeCCccccccCC--------CCcccCCcC
Confidence 377787777654222 2223677888773 577777655
No 147
>PF07191 zinc-ribbons_6: zinc-ribbons; InterPro: IPR010807 This family consists of several short, hypothetical bacterial proteins of around 70 residues in length. Members of this family 8 highly conserved cysteine residues. The function of the family is unknown.; PDB: 2JRP_A 2JNE_A.
Probab=43.41 E-value=2.3 Score=31.07 Aligned_cols=40 Identities=20% Similarity=0.458 Sum_probs=19.1
Q ss_pred ccccccccccccCCeeEEeCCCCccChhhHHHHHhcCCCCcccccccc
Q 024005 210 LTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQQGTCPVCKLRAG 257 (274)
Q Consensus 210 ~~C~ICLe~~~~~~~v~~lpCgH~FH~~CI~~WL~~~~tCPlCR~~i~ 257 (274)
..|+.|..++.... +|.+|..|-.. ++....||-|.+++.
T Consensus 2 ~~CP~C~~~L~~~~-------~~~~C~~C~~~-~~~~a~CPdC~~~Le 41 (70)
T PF07191_consen 2 NTCPKCQQELEWQG-------GHYHCEACQKD-YKKEAFCPDCGQPLE 41 (70)
T ss_dssp -B-SSS-SBEEEET-------TEEEETTT--E-EEEEEE-TTT-SB-E
T ss_pred CcCCCCCCccEEeC-------CEEECcccccc-ceecccCCCcccHHH
Confidence 36888887765332 55555666443 344556888877654
No 148
>KOG3726 consensus Uncharacterized conserved protein [Function unknown]
Probab=42.97 E-value=10 Score=38.94 Aligned_cols=62 Identities=23% Similarity=0.418 Sum_probs=38.8
Q ss_pred ccccccccccc-cCCeeEEeCCCCccChhhHHHHHhcCCCCccccccccCCCCCCCCccccCCCCC
Q 024005 210 LTCTVCLEQVN-VGEIVRSLPCLHQFHANCIDPWLRQQGTCPVCKLRAGSGWHETRQVEMDASYMV 274 (274)
Q Consensus 210 ~~C~ICLe~~~-~~~~v~~lpCgH~FH~~CI~~WL~~~~tCPlCR~~i~~~~~~~~~~~~~~s~~~ 274 (274)
..|.+|...=. ..+..+.+.|+..||..| |+.-.+.||+|--...-+......+..+-+||+
T Consensus 655 r~C~vcq~pedse~~v~rt~~C~~~~C~~c---~~~~~~~~~vC~~~~~~s~~a~~~s~~~~~y~~ 717 (717)
T KOG3726|consen 655 RTCKVCQLPEDSETDVCRTTFCYTPYCVAC---SLDYASISEVCGPDAAISYTAAVASILVVGYMV 717 (717)
T ss_pred HHHHHhcCCcCccccccCccccCCcchHhh---hhhhhccCcccCchhhhhhhhhhhhhhhhhcCC
Confidence 47888876543 223345566999999998 555688899995544444444444444444543
No 149
>PF05814 DUF843: Baculovirus protein of unknown function (DUF843); InterPro: IPR008561 This family consists of several unidentified baculovirus proteins of around 85 residues long with no known function.
Probab=41.58 E-value=89 Score=23.56 Aligned_cols=34 Identities=15% Similarity=0.316 Sum_probs=23.5
Q ss_pred HHHHHhccCCCchhHHHHHHHHHHHHHHhhhHHH
Q 024005 47 LLFMILNSHQMSSNFLLWIVLGIFLLATSLRMYA 80 (274)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~~~~f~~a~~l~~y~ 80 (274)
++-.+++---...++++.+++.+.++...|++|.
T Consensus 12 ~~~fi~~k~~~~s~li~~~LilfviF~~~L~~yy 45 (83)
T PF05814_consen 12 VLGFIFDKNEGFSELIITLLILFVIFFCVLQVYY 45 (83)
T ss_pred HHHHHHccccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455544667777777888888888889884
No 150
>PRK12585 putative monovalent cation/H+ antiporter subunit G; Reviewed
Probab=40.14 E-value=36 Score=29.75 Aligned_cols=23 Identities=22% Similarity=0.160 Sum_probs=11.8
Q ss_pred ccccc-CCcccCcchhHHHHHHHH
Q 024005 25 TVRIH-AGRPVNSNSLAFLVTVLL 47 (274)
Q Consensus 25 ~~~~~-~~~~~~~~~~~~l~~~~~ 47 (274)
.+|.| +++.-...-..+|+.+++
T Consensus 34 YtRLHAATKa~TLGv~LILlgv~l 57 (197)
T PRK12585 34 YTRTHAAGISNTFGVSLLLFATVG 57 (197)
T ss_pred HHHhhccccchhhhHHHHHHHHHH
Confidence 57999 555544443333433333
No 151
>PLN02400 cellulose synthase
Probab=39.19 E-value=35 Score=37.19 Aligned_cols=51 Identities=22% Similarity=0.488 Sum_probs=33.4
Q ss_pred CcccccccccccccC---CeeE-EeCCCCccChhhHHH-HHhcCCCCccccccccC
Q 024005 208 DELTCTVCLEQVNVG---EIVR-SLPCLHQFHANCIDP-WLRQQGTCPVCKLRAGS 258 (274)
Q Consensus 208 e~~~C~ICLe~~~~~---~~v~-~lpCgH~FH~~CI~~-WL~~~~tCPlCR~~i~~ 258 (274)
....|-||=+++... +.-. +--|+--.|..|.+- .=..++.||-||+....
T Consensus 35 ~gqiCqICGD~VG~t~dGe~FVAC~eCaFPVCRpCYEYERkeGnq~CPQCkTrYkR 90 (1085)
T PLN02400 35 NGQICQICGDDVGVTETGDVFVACNECAFPVCRPCYEYERKDGTQCCPQCKTRYRR 90 (1085)
T ss_pred CCceeeecccccCcCCCCCEEEEEccCCCccccchhheecccCCccCcccCCcccc
Confidence 455899999997533 3322 223676689999732 11235689999998763
No 152
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=38.12 E-value=15 Score=21.42 Aligned_cols=22 Identities=32% Similarity=0.620 Sum_probs=11.5
Q ss_pred cccccccccccCCeeEEeC-CCCcc
Q 024005 211 TCTVCLEQVNVGEIVRSLP-CLHQF 234 (274)
Q Consensus 211 ~C~ICLe~~~~~~~v~~lp-CgH~F 234 (274)
.|+-|-..+... ...-| |||.|
T Consensus 2 ~CP~C~~~V~~~--~~~Cp~CG~~F 24 (26)
T PF10571_consen 2 TCPECGAEVPES--AKFCPHCGYDF 24 (26)
T ss_pred cCCCCcCCchhh--cCcCCCCCCCC
Confidence 466666665432 22334 66665
No 153
>PF13717 zinc_ribbon_4: zinc-ribbon domain
Probab=37.62 E-value=17 Score=22.83 Aligned_cols=25 Identities=32% Similarity=0.671 Sum_probs=15.2
Q ss_pred cccccccccccCCe--------eEEeCCCCccC
Q 024005 211 TCTVCLEQVNVGEI--------VRSLPCLHQFH 235 (274)
Q Consensus 211 ~C~ICLe~~~~~~~--------v~~lpCgH~FH 235 (274)
.|+=|...|..++. +..-.|+|.|+
T Consensus 4 ~Cp~C~~~y~i~d~~ip~~g~~v~C~~C~~~f~ 36 (36)
T PF13717_consen 4 TCPNCQAKYEIDDEKIPPKGRKVRCSKCGHVFF 36 (36)
T ss_pred ECCCCCCEEeCCHHHCCCCCcEEECCCCCCEeC
Confidence 57778777765542 33444677664
No 154
>COG4847 Uncharacterized protein conserved in archaea [Function unknown]
Probab=36.48 E-value=37 Score=26.27 Aligned_cols=36 Identities=22% Similarity=0.352 Sum_probs=29.8
Q ss_pred cccccccccccccCCeeEEeCCCCccChhhHHHHHhc
Q 024005 209 ELTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQ 245 (274)
Q Consensus 209 ~~~C~ICLe~~~~~~~v~~lpCgH~FH~~CI~~WL~~ 245 (274)
+-.|.||=..+..|+..+.++ .-..|.+|+..=.++
T Consensus 6 ewkC~VCg~~iieGqkFTF~~-kGsVH~eCl~~s~~~ 41 (103)
T COG4847 6 EWKCYVCGGTIIEGQKFTFTK-KGSVHYECLAESKRK 41 (103)
T ss_pred eeeEeeeCCEeeeccEEEEee-CCcchHHHHHHHHhc
Confidence 458999999999999988888 556899998875544
No 155
>smart00064 FYVE Protein present in Fab1, YOTB, Vac1, and EEA1. The FYVE zinc finger is named after four proteins where it was first found: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two Zn2+ ions. The FYVE finger has eight potential zinc coordinating cysteine positions. The FYVE finger is structurally related to the PF13832 zf-HC5HC2H_2: PHD-zinc-finger like domain
Probab=36.16 E-value=29 Score=26.72 Aligned_cols=32 Identities=25% Similarity=0.654 Sum_probs=22.4
Q ss_pred CcccccccccccccCCeeEEeC--CCCccChhhHHH
Q 024005 208 DELTCTVCLEQVNVGEIVRSLP--CLHQFHANCIDP 241 (274)
Q Consensus 208 e~~~C~ICLe~~~~~~~v~~lp--CgH~FH~~CI~~ 241 (274)
....|.||... .|..+..-. |...||..|...
T Consensus 54 ~~~~C~iC~~~--~G~~i~C~~~~C~~~fH~~CA~~ 87 (110)
T PF13832_consen 54 FKLKCSICGKS--GGACIKCSHPGCSTAFHPTCARK 87 (110)
T ss_pred cCCcCcCCCCC--CceeEEcCCCCCCcCCCHHHHHH
Confidence 35589999988 343333333 888999999865
No 157
>PF15052 TMEM169: TMEM169 protein family
Probab=35.32 E-value=48 Score=26.98 Aligned_cols=34 Identities=26% Similarity=0.326 Sum_probs=28.3
Q ss_pred CCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 024005 56 QMSSNFLLWIVLGIFLLATSLRMYATCQQLHAQA 89 (274)
Q Consensus 56 ~~~~~~~~~~~~~~f~~a~~l~~y~~~~~lq~~~ 89 (274)
-+.|-+.++-++.+.+.+.+|..||..+|+-.+-
T Consensus 61 ~~cPlLIl~YP~lIv~~t~~LglYaa~~QlSw~~ 94 (133)
T PF15052_consen 61 TVCPLLILFYPFLIVLVTLSLGLYAAFVQLSWSF 94 (133)
T ss_pred hhccHHHHHHHHHHHHHHHHHHHHHHhhheeeeH
Confidence 4667777777888889999999999999997753
No 158
>PLN02638 cellulose synthase A (UDP-forming), catalytic subunit
Probab=35.20 E-value=62 Score=35.31 Aligned_cols=50 Identities=20% Similarity=0.442 Sum_probs=33.3
Q ss_pred CcccccccccccccC---CeeEEeC-CCCccChhhHHH-HHhcCCCCcccccccc
Q 024005 208 DELTCTVCLEQVNVG---EIVRSLP-CLHQFHANCIDP-WLRQQGTCPVCKLRAG 257 (274)
Q Consensus 208 e~~~C~ICLe~~~~~---~~v~~lp-CgH~FH~~CI~~-WL~~~~tCPlCR~~i~ 257 (274)
....|-||=+++... +.-.... |+--.|..|.+= .-..++.||-||+...
T Consensus 16 ~~qiCqICGD~vg~~~~Ge~FVAC~eC~FPVCrpCYEYEr~eG~q~CPqCktrYk 70 (1079)
T PLN02638 16 GGQVCQICGDNVGKTVDGEPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTKYK 70 (1079)
T ss_pred CCceeeecccccCcCCCCCEEEEeccCCCccccchhhhhhhcCCccCCccCCchh
Confidence 455899999997533 3322222 666689999842 1233668999998776
No 159
>COG3492 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=34.42 E-value=18 Score=27.80 Aligned_cols=13 Identities=38% Similarity=1.086 Sum_probs=11.1
Q ss_pred ccChhhHHHHHhc
Q 024005 233 QFHANCIDPWLRQ 245 (274)
Q Consensus 233 ~FH~~CI~~WL~~ 245 (274)
.||.+|+..|++-
T Consensus 42 gFCRNCLs~Wy~e 54 (104)
T COG3492 42 GFCRNCLSNWYRE 54 (104)
T ss_pred HHHHHHHHHHHHH
Confidence 3999999999863
No 160
>PF05715 zf-piccolo: Piccolo Zn-finger; InterPro: IPR008899 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This (predicted) zinc finger is found in the bassoon and piccolo proteins, both of which are components of the presynaptic cytoskeletal matrix (PCM) assembled at the active zone of neurotransmitter release, where Piccolo plays a role in the trafficking of synaptic vesicles (SVs) [, , ]. The Piccolo zinc fingers were found to interact with the dual prenylated rab3A and VAMP2/Synaptobrevin II receptor PRA1. There are eight conserved cysteines in Piccolo-type zinc fingers, suggesting that they coordinates two zinc ligands. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0046872 metal ion binding, 0045202 synapse
Probab=34.27 E-value=28 Score=24.64 Aligned_cols=16 Identities=31% Similarity=0.766 Sum_probs=10.1
Q ss_pred CCCCccccccccCCCC
Q 024005 246 QGTCPVCKLRAGSGWH 261 (274)
Q Consensus 246 ~~tCPlCR~~i~~~~~ 261 (274)
+..||+|+..+..+..
T Consensus 2 k~~CPlCkt~~n~gsk 17 (61)
T PF05715_consen 2 KSLCPLCKTTLNVGSK 17 (61)
T ss_pred CccCCcccchhhcCCC
Confidence 4568888877644433
No 161
>cd00065 FYVE FYVE domain; Zinc-binding domain; targets proteins to membrane lipids via interaction with phosphatidylinositol-3-phosphate, PI3P; present in Fab1, YOTB, Vac1, and EEA1;
Probab=32.95 E-value=30 Score=23.17 Aligned_cols=34 Identities=15% Similarity=0.334 Sum_probs=23.9
Q ss_pred ccccccccccccCCe-eEEeCCCCccChhhHHHHH
Q 024005 210 LTCTVCLEQVNVGEI-VRSLPCLHQFHANCIDPWL 243 (274)
Q Consensus 210 ~~C~ICLe~~~~~~~-v~~lpCgH~FH~~CI~~WL 243 (274)
..|.+|-..|..-.. ...-.||++|+..|.....
T Consensus 3 ~~C~~C~~~F~~~~rk~~Cr~Cg~~~C~~C~~~~~ 37 (57)
T cd00065 3 SSCMGCGKPFTLTRRRHHCRNCGRIFCSKCSSNRI 37 (57)
T ss_pred CcCcccCccccCCccccccCcCcCCcChHHcCCee
Confidence 369999888875432 2234499999999976654
No 162
>KOG4430 consensus Topoisomerase I-binding arginine-serine-rich protein [Transcription]
Probab=32.94 E-value=15 Score=36.91 Aligned_cols=60 Identities=20% Similarity=0.222 Sum_probs=51.3
Q ss_pred CCcccccccccccccCCeeEEeC-CCCccChhhHHHHHhcCCCCccccccccCCCCCCCCc
Q 024005 207 EDELTCTVCLEQVNVGEIVRSLP-CLHQFHANCIDPWLRQQGTCPVCKLRAGSGWHETRQV 266 (274)
Q Consensus 207 ~e~~~C~ICLe~~~~~~~v~~lp-CgH~FH~~CI~~WL~~~~tCPlCR~~i~~~~~~~~~~ 266 (274)
+....|.+|+......+....+. |.+.++..|+..|=.....|+.|++++...+++..++
T Consensus 258 ~~~~~~~~~~~~~~~~eqk~l~~~~~~~~g~tsl~~e~~~~~v~~~~~tk~~~~~~e~r~G 318 (553)
T KOG4430|consen 258 ENKNACGLCLSEADAKEQKGLEGNNQRQTGATSLMEEEAVESVCPLRVTKVRTISKEARQG 318 (553)
T ss_pred hcccchhhchhhHhHHHhhhhhhcccchhhhhhhhhhhhhhhhhhcccccccccccccccC
Confidence 45668999999887776666666 7899999999999888899999999999988888873
No 163
>KOG3842 consensus Adaptor protein Pellino [Signal transduction mechanisms]
Probab=32.78 E-value=40 Score=31.81 Aligned_cols=51 Identities=22% Similarity=0.520 Sum_probs=34.0
Q ss_pred Cccccccccccc---------------ccC-CeeEEeCCCCccChhhHHHHHhc---------CCCCccccccccC
Q 024005 208 DELTCTVCLEQV---------------NVG-EIVRSLPCLHQFHANCIDPWLRQ---------QGTCPVCKLRAGS 258 (274)
Q Consensus 208 e~~~C~ICLe~~---------------~~~-~~v~~lpCgH~FH~~CI~~WL~~---------~~tCPlCR~~i~~ 258 (274)
.+.+|++|+..- ..| -....-||||.--.+-..-|-+. +..||.|-+.+..
T Consensus 340 ~~r~CPmC~~~gp~V~L~lG~E~~f~vD~G~pthaF~PCGHv~sekt~~YWs~iplPhGT~~f~a~CPFC~~~L~g 415 (429)
T KOG3842|consen 340 RERECPMCRVVGPYVPLWLGCEAGFYVDAGPPTHAFNPCGHVCSEKTVKYWSQIPLPHGTHAFHAACPFCATQLAG 415 (429)
T ss_pred ccCcCCeeeeecceeeeeccccceeEecCCCcccccCCcccccchhhhhHhhcCcCCCccccccccCcchhhhhcc
Confidence 466899998651 111 12234689998888888888753 3469999776644
No 164
>KOG4218 consensus Nuclear hormone receptor betaFTZ-F1 [Transcription]
Probab=31.79 E-value=14 Score=35.06 Aligned_cols=48 Identities=25% Similarity=0.497 Sum_probs=26.3
Q ss_pred CCcccccccccccccCCeeEEeC---CCCcc--------ChhhHHHHH-----hcCCCCcccccc
Q 024005 207 EDELTCTVCLEQVNVGEIVRSLP---CLHQF--------HANCIDPWL-----RQQGTCPVCKLR 255 (274)
Q Consensus 207 ~e~~~C~ICLe~~~~~~~v~~lp---CgH~F--------H~~CI~~WL-----~~~~tCPlCR~~ 255 (274)
+.+..|++|=+.+..- .-..|. |.-.| |..|+..-- .+.+.||.||+.
T Consensus 13 dl~ElCPVCGDkVSGY-HYGLLTCESCKGFFKRTVQNnK~YtC~e~qnC~iDkTqRKRCP~CRFQ 76 (475)
T KOG4218|consen 13 DLGELCPVCGDKVSGY-HYGLLTCESCKGFFKRTVQNNKQYTCSEEQNCHIDKTQRKRCPSCRFQ 76 (475)
T ss_pred ccccccccccCccccc-eeeeeehhhhhhHHHHHhhcCcceecccccccccchHhhccCCchhHH
Confidence 4567899998876522 222333 44333 333433321 124579999974
No 165
>TIGR00622 ssl1 transcription factor ssl1. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=31.61 E-value=54 Score=26.17 Aligned_cols=44 Identities=18% Similarity=0.255 Sum_probs=31.6
Q ss_pred ccccccccccccCC-----------eeEEeCCCCccChhhHHHHHhcCCCCcccc
Q 024005 210 LTCTVCLEQVNVGE-----------IVRSLPCLHQFHANCIDPWLRQQGTCPVCK 253 (274)
Q Consensus 210 ~~C~ICLe~~~~~~-----------~v~~lpCgH~FH~~CI~~WL~~~~tCPlCR 253 (274)
..|--|+..|.... .-....|++.||.+|=.-+-..-..||-|.
T Consensus 56 ~~C~~C~~~f~~~~~~~~~~~~~~~~y~C~~C~~~FC~dCD~fiHe~Lh~CPGC~ 110 (112)
T TIGR00622 56 RFCFGCQGPFPKPPVSPFDELKDSHRYVCAVCKNVFCVDCDVFVHESLHCCPGCI 110 (112)
T ss_pred CcccCcCCCCCCcccccccccccccceeCCCCCCccccccchhhhhhccCCcCCC
Confidence 35999988876321 122345999999999766666777899995
No 166
>PF15128 T_cell_tran_alt: T-cell leukemia translocation-altered
Probab=31.03 E-value=82 Score=23.91 Aligned_cols=25 Identities=28% Similarity=0.765 Sum_probs=18.7
Q ss_pred HHHHhccCCCchhHHHHHHHHHHHHHHhhhHHHH
Q 024005 48 LFMILNSHQMSSNFLLWIVLGIFLLATSLRMYAT 81 (274)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~~~f~~a~~l~~y~~ 81 (274)
+|+++ +.|+++.++.+-.+-++|.-
T Consensus 27 ifkll---------L~WlvlsLl~I~lAWk~yG~ 51 (92)
T PF15128_consen 27 IFKLL---------LGWLVLSLLAIHLAWKVYGN 51 (92)
T ss_pred HHHHH---------HHHHHHHHHHHHHHHHHhcc
Confidence 77777 78998888777776666643
No 167
>PF07649 C1_3: C1-like domain; InterPro: IPR011424 This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in IPR002219 from INTERPRO. C1 domains are protein kinase C-like zinc finger structures. Diacylglycerol (DAG) kinases (DGKs) have a two or three commonly conserved cysteine-rich C1 domains []. DGKs modulate the balance between the two signaling lipids, DAG and phosphatidic acid (PA), by phosphorylating DAG to yield PA []. The PKD (protein kinase D) family are novel DAG receptors. They have twin C1 domains, designated C1a and C1b, which bind DAG or phorbol esters. Individual C1 domains differ in ligand-binding activity and selectivity []. ; GO: 0047134 protein-disulfide reductase activity, 0055114 oxidation-reduction process; PDB: 1V5N_A.
Probab=30.86 E-value=35 Score=20.12 Aligned_cols=29 Identities=24% Similarity=0.619 Sum_probs=10.3
Q ss_pred cccccccccccCCeeEEeCCCCccChhhH
Q 024005 211 TCTVCLEQVNVGEIVRSLPCLHQFHANCI 239 (274)
Q Consensus 211 ~C~ICLe~~~~~~~v~~lpCgH~FH~~CI 239 (274)
.|.+|-+....+-.-....|.-.+|..|+
T Consensus 2 ~C~~C~~~~~~~~~Y~C~~Cdf~lH~~Ca 30 (30)
T PF07649_consen 2 RCDACGKPIDGGWFYRCSECDFDLHEECA 30 (30)
T ss_dssp --TTTS----S--EEE-TTT-----HHHH
T ss_pred cCCcCCCcCCCCceEECccCCCccChhcC
Confidence 58888888765333344568888888885
No 168
>PF04423 Rad50_zn_hook: Rad50 zinc hook motif; InterPro: IPR007517 The Mre11 complex (Mre11 Rad50 Nbs1) is central to chromosomal maintenance and functions in homologous recombination, telomere maintenance and sister chromatid association. The Rad50 coiled-coil region contains a dimer interface at the apex of the coiled coils in which pairs of conserved Cys-X-X-Cys motifs form interlocking hooks that bind one Zn ion. This alignment includes the zinc hook motif and a short stretch of coiled-coil on either side.; GO: 0004518 nuclease activity, 0005524 ATP binding, 0008270 zinc ion binding, 0006281 DNA repair; PDB: 1L8D_B.
Probab=29.98 E-value=20 Score=24.27 Aligned_cols=12 Identities=25% Similarity=0.722 Sum_probs=6.3
Q ss_pred CCccccccccCC
Q 024005 248 TCPVCKLRAGSG 259 (274)
Q Consensus 248 tCPlCR~~i~~~ 259 (274)
.||+|..++...
T Consensus 22 ~CPlC~r~l~~e 33 (54)
T PF04423_consen 22 CCPLCGRPLDEE 33 (54)
T ss_dssp E-TTT--EE-HH
T ss_pred cCCCCCCCCCHH
Confidence 799999888653
No 169
>PF06750 DiS_P_DiS: Bacterial Peptidase A24 N-terminal domain; InterPro: IPR010627 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This domain is found at the N terminus of bacterial aspartic peptidases belonging to MEROPS peptidase family A24 (clan AD), subfamily A24A (type IV prepilin peptidase, IPR000045 from INTERPRO). It's function has not been specifically determined; however some of the family have been characterised as bifunctional [], and this domain may contain the N-methylation activity. The domain consists of an intracellular region between a pair of transmembrane domains. This intracellular region contains an invariant proline and four conserved cysteines. These Cys residues are arranged in a two-pair motif, with the Cys residues of a pair separated (usually) by 2 aa and with each pair separated by 21 largely hydrophilic residues (C-X-X-C...X21...C-X-X-C); they have been shown to be essential to the overall function of the enzyme [, ]. The bifunctional enzyme prepilin peptidase (PilD) from Pseudomonas aeruginosa is a key determinant in both type-IV pilus biogenesis and extracellular protein secretion, in its roles as a leader peptidase and methyl transferase (MTase). It is responsible for endopeptidic cleavage of the unique leader peptides that characterise type-IV pilin precursors, as well as proteins with homologous leader sequences that are essential components of the general secretion pathway found in a variety of Gram-negative pathogens. Following removal of the leader peptides, the same enzyme is responsible for the second posttranslational modification that characterises the type-IV pilins and their homologues, namely N-methylation of the newly exposed N-terminal amino acid residue [].
Probab=29.71 E-value=30 Score=26.36 Aligned_cols=38 Identities=18% Similarity=0.402 Sum_probs=29.2
Q ss_pred ccccccccccccCCeeEEeCCCCccChhhHHHHHhcCCCCccccccccCC
Q 024005 210 LTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQQGTCPVCKLRAGSG 259 (274)
Q Consensus 210 ~~C~ICLe~~~~~~~v~~lpCgH~FH~~CI~~WL~~~~tCPlCR~~i~~~ 259 (274)
..|.-|...+.--|.+- |-.|+..++.|..|+++++..
T Consensus 34 S~C~~C~~~L~~~~lIP------------i~S~l~lrGrCr~C~~~I~~~ 71 (92)
T PF06750_consen 34 SHCPHCGHPLSWWDLIP------------ILSYLLLRGRCRYCGAPIPPR 71 (92)
T ss_pred CcCcCCCCcCcccccch------------HHHHHHhCCCCcccCCCCChH
Confidence 37988888877655443 447999999999999998753
No 170
>PF06906 DUF1272: Protein of unknown function (DUF1272); InterPro: IPR010696 This family consists of several hypothetical bacterial proteins of around 80 residues in length. This family contains a number of conserved cysteine residues and its function is unknown.
Probab=29.56 E-value=69 Score=22.38 Aligned_cols=44 Identities=25% Similarity=0.576 Sum_probs=29.0
Q ss_pred cccccccccccCCeeEEeCCC--CccChhhHHHHHhcCCCCcccccccc
Q 024005 211 TCTVCLEQVNVGEIVRSLPCL--HQFHANCIDPWLRQQGTCPVCKLRAG 257 (274)
Q Consensus 211 ~C~ICLe~~~~~~~v~~lpCg--H~FH~~CI~~WL~~~~tCPlCR~~i~ 257 (274)
.|-.|-.++.....- ..-|. ..||.+|.+..| +..||.|--.+.
T Consensus 7 nCE~C~~dLp~~s~~-A~ICSfECTFC~~C~e~~l--~~~CPNCgGelv 52 (57)
T PF06906_consen 7 NCECCDKDLPPDSPE-AYICSFECTFCADCAETML--NGVCPNCGGELV 52 (57)
T ss_pred CccccCCCCCCCCCc-ceEEeEeCcccHHHHHHHh--cCcCcCCCCccc
Confidence 466777776644311 11243 469999999876 788999976554
No 171
>PF08999 SP_C-Propep: Surfactant protein C, N terminal propeptide; InterPro: IPR015091 The N-terminal propeptide of surfactant protein C adopts an alpha-helical structure, with turn and extended regions. Its main function is the stabilisation of metastable surfactant protein C (SP-C), since the latter can irreversibly transform from its native alpha-helical structure to beta-sheet aggregates and form amyloid-like fibrils. The correct intracellular trafficking of proSP-C has also been reported to depend on the propeptide []. ; PDB: 1SPF_A 2YAD_F.
Probab=29.49 E-value=72 Score=24.04 Aligned_cols=23 Identities=30% Similarity=0.537 Sum_probs=15.4
Q ss_pred CCcccCcchhHHHHHHHHHHHHh
Q 024005 30 AGRPVNSNSLAFLVTVLLLFMIL 52 (274)
Q Consensus 30 ~~~~~~~~~~~~l~~~~~~~~~~ 52 (274)
|.-|+|..++++++.++++..++
T Consensus 27 Pc~p~~lKrlliivvVvVlvVvv 49 (93)
T PF08999_consen 27 PCCPVNLKRLLIIVVVVVLVVVV 49 (93)
T ss_dssp SSS-SHHHHHHHHHHHHHHHHHH
T ss_pred CccccccceEEEEEEeeehhHHH
Confidence 66688888887777776665544
No 172
>PF00412 LIM: LIM domain; InterPro: IPR001781 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents LIM-type zinc finger (Znf) domains. LIM domains coordinate one or more zinc atoms, and are named after the three proteins (LIN-11, Isl1 and MEC-3) in which they were first found. They consist of two zinc-binding motifs that resemble GATA-like Znf's, however the residues holding the zinc atom(s) are variable, involving Cys, His, Asp or Glu residues. LIM domains are involved in proteins with differing functions, including gene expression, and cytoskeleton organisation and development [, ]. Protein containing LIM Znf domains include: Caenorhabditis elegans mec-3; a protein required for the differentiation of the set of six touch receptor neurons in this nematode. C. elegans. lin-11; a protein required for the asymmetric division of vulval blast cells. Vertebrate insulin gene enhancer binding protein isl-1. Isl-1 binds to one of the two cis-acting protein-binding domains of the insulin gene. Vertebrate homeobox proteins lim-1, lim-2 (lim-5) and lim3. Vertebrate lmx-1, which acts as a transcriptional activator by binding to the FLAT element; a beta-cell-specific transcriptional enhancer found in the insulin gene. Mammalian LH-2, a transcriptional regulatory protein involved in the control of cell differentiation in developing lymphoid and neural cell types. Drosophila melanogaster (Fruit fly) protein apterous, required for the normal development of the wing and halter imaginal discs. Vertebrate protein kinases LIMK-1 and LIMK-2. Mammalian rhombotins. Rhombotin 1 (RBTN1 or TTG-1) and rhombotin-2 (RBTN2 or TTG-2) are proteins of about 160 amino acids whose genes are disrupted by chromosomal translocations in T-cell leukemia. Mammalian and avian cysteine-rich protein (CRP), a 192 amino-acid protein of unknown function. Seems to interact with zyxin. Mammalian cysteine-rich intestinal protein (CRIP), a small protein which seems to have a role in zinc absorption and may function as an intracellular zinc transport protein. Vertebrate paxillin, a cytoskeletal focal adhesion protein. Mus musculus (Mouse) testin which should not be confused with rat testin which is a thiol protease homologue (see IPR000169 from INTERPRO). Helianthus annuus (Common sunflower) pollen specific protein SF3. Chicken zyxin. Zyxin is a low-abundance adhesion plaque protein which has been shown to interact with CRP. Yeast protein LRG1 which is involved in sporulation []. Saccharomyces cerevisiae (Baker's yeast) rho-type GTPase activating protein RGA1/DBM1. C. elegans homeobox protein ceh-14. C. elegans homeobox protein unc-97. S. cerevisiae hypothetical protein YKR090w. C. elegans hypothetical proteins C28H8.6. These proteins generally contain two tandem copies of the LIM domain in their N-terminal section. Zyxin and paxillin are exceptions in that they contain respectively three and four LIM domains at their C-terminal extremity. In apterous, isl-1, LH-2, lin-11, lim-1 to lim-3, lmx-1 and ceh-14 and mec-3 there is a homeobox domain some 50 to 95 amino acids after the LIM domains. LIM domains contain seven conserved cysteine residues and a histidine. The arrangement followed by these conserved residues is: C-x(2)-C-x(16,23)-H-x(2)-[CH]-x(2)-C-x(2)-C-x(16,21)-C-x(2,3)-[CHD] LIM domains bind two zinc ions []. LIM does not bind DNA, rather it seems to act as an interface for protein-protein interaction. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2CO8_A 2EGQ_A 2CUR_A 3IXE_B 1CTL_A 1B8T_A 1X62_A 2DFY_C 1IML_A 2CUQ_A ....
Probab=29.10 E-value=54 Score=21.75 Aligned_cols=40 Identities=25% Similarity=0.430 Sum_probs=24.5
Q ss_pred ccccccccccCCeeEEeCCCCccChhhHHHHHhcCCCCccccccccCCC
Q 024005 212 CTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQQGTCPVCKLRAGSGW 260 (274)
Q Consensus 212 C~ICLe~~~~~~~v~~lpCgH~FH~~CI~~WL~~~~tCPlCR~~i~~~~ 260 (274)
|..|-..+..++.+ ...-+..||.+| .+|-.|+..+..+.
T Consensus 1 C~~C~~~I~~~~~~-~~~~~~~~H~~C--------f~C~~C~~~l~~~~ 40 (58)
T PF00412_consen 1 CARCGKPIYGTEIV-IKAMGKFWHPEC--------FKCSKCGKPLNDGD 40 (58)
T ss_dssp BTTTSSBESSSSEE-EEETTEEEETTT--------SBETTTTCBTTTSS
T ss_pred CCCCCCCccCcEEE-EEeCCcEEEccc--------cccCCCCCccCCCe
Confidence 56666666644332 223567788777 35788877776553
No 173
>PF13771 zf-HC5HC2H: PHD-like zinc-binding domain
Probab=28.47 E-value=36 Score=25.09 Aligned_cols=33 Identities=21% Similarity=0.500 Sum_probs=21.3
Q ss_pred cccccccccccccCCeeEEeCCCCccChhhHHH
Q 024005 209 ELTCTVCLEQVNVGEIVRSLPCLHQFHANCIDP 241 (274)
Q Consensus 209 ~~~C~ICLe~~~~~~~v~~lpCgH~FH~~CI~~ 241 (274)
...|.+|-......-....-.|...||..|...
T Consensus 36 ~~~C~~C~~~~Ga~i~C~~~~C~~~fH~~CA~~ 68 (90)
T PF13771_consen 36 KLKCSICKKKGGACIGCSHPGCSRSFHVPCARK 68 (90)
T ss_pred CCCCcCCCCCCCeEEEEeCCCCCcEEChHHHcc
Confidence 458999987733221222233889999999754
No 174
>PF11119 DUF2633: Protein of unknown function (DUF2633); InterPro: IPR022576 This family is conserved largely in Proteobacteria. Several members are named as YfgG. The function is not known.
Probab=28.44 E-value=1.3e+02 Score=21.18 Aligned_cols=17 Identities=24% Similarity=0.534 Sum_probs=10.0
Q ss_pred cchhHHHHHHHHHHHHh
Q 024005 36 SNSLAFLVTVLLLFMIL 52 (274)
Q Consensus 36 ~~~~~~l~~~~~~~~~~ 52 (274)
..+.++|++++.+|.-|
T Consensus 9 mtriVLLISfiIlfgRl 25 (59)
T PF11119_consen 9 MTRIVLLISFIILFGRL 25 (59)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34556666666666644
No 175
>PF13719 zinc_ribbon_5: zinc-ribbon domain
Probab=28.23 E-value=32 Score=21.57 Aligned_cols=25 Identities=36% Similarity=0.673 Sum_probs=15.3
Q ss_pred cccccccccccCC--------eeEEeCCCCccC
Q 024005 211 TCTVCLEQVNVGE--------IVRSLPCLHQFH 235 (274)
Q Consensus 211 ~C~ICLe~~~~~~--------~v~~lpCgH~FH 235 (274)
+|+-|...|..++ .++.-.|+|.|.
T Consensus 4 ~CP~C~~~f~v~~~~l~~~~~~vrC~~C~~~f~ 36 (37)
T PF13719_consen 4 TCPNCQTRFRVPDDKLPAGGRKVRCPKCGHVFR 36 (37)
T ss_pred ECCCCCceEEcCHHHcccCCcEEECCCCCcEee
Confidence 6888887776554 233344677664
No 176
>PF11044 TMEMspv1-c74-12: Plectrovirus spv1-c74 ORF 12 transmembrane protein; InterPro: IPR022743 This is a group of proteins expressed by Plectroviruses. The Plectroviruses are single-stranded DNA viruses belonging to the Inoviridae. This entry represents putative transmembrane proteins of unknown function.
Probab=27.95 E-value=1.5e+02 Score=19.73 Aligned_cols=14 Identities=21% Similarity=0.546 Sum_probs=11.2
Q ss_pred hhhHHHHHHHHHHH
Q 024005 75 SLRMYATCQQLHAQ 88 (274)
Q Consensus 75 ~l~~y~~~~~lq~~ 88 (274)
+|-+|...+|.+..
T Consensus 22 Gl~IyQkikqIrgK 35 (49)
T PF11044_consen 22 GLSIYQKIKQIRGK 35 (49)
T ss_pred HHHHHHHHHHHHhh
Confidence 57889999888763
No 177
>PF04710 Pellino: Pellino; InterPro: IPR006800 Pellino is involved in Toll-like signalling pathways, and associates with the kinase domain of the Pelle Ser/Thr kinase [, , ].; PDB: 3EGB_B 3EGA_A.
Probab=27.75 E-value=20 Score=34.66 Aligned_cols=50 Identities=22% Similarity=0.462 Sum_probs=0.0
Q ss_pred ccccccccccc-------------ccC---CeeEEeCCCCccChhhHHHHHhc---------CCCCccccccccC
Q 024005 209 ELTCTVCLEQV-------------NVG---EIVRSLPCLHQFHANCIDPWLRQ---------QGTCPVCKLRAGS 258 (274)
Q Consensus 209 ~~~C~ICLe~~-------------~~~---~~v~~lpCgH~FH~~CI~~WL~~---------~~tCPlCR~~i~~ 258 (274)
..+|++|+..- ..+ -....-||||.--.+...-|-+- +..||.|-..+..
T Consensus 328 ~r~CPlCr~~g~~V~L~mG~E~afyvD~~~pthaF~PCGHv~SekTa~yWs~i~lPhGt~~f~a~CPFCa~~L~g 402 (416)
T PF04710_consen 328 SRTCPLCRQVGPYVPLWMGCEPAFYVDSGPPTHAFNPCGHVCSEKTAKYWSQIPLPHGTHAFHAACPFCATPLDG 402 (416)
T ss_dssp ---------------------------------------------------------------------------
T ss_pred cccCCCccccCCceeEeeccccceeecCCCCceeecccccccchhhhhhhhcCCCCCCcccccccCCcccCcccC
Confidence 66899998652 000 12345789999888899999653 3469999887763
No 178
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=27.60 E-value=47 Score=25.57 Aligned_cols=10 Identities=60% Similarity=0.624 Sum_probs=4.9
Q ss_pred hhHHHHHHHH
Q 024005 38 SLAFLVTVLL 47 (274)
Q Consensus 38 ~~~~l~~~~~ 47 (274)
||+||++.++
T Consensus 3 SK~~llL~l~ 12 (95)
T PF07172_consen 3 SKAFLLLGLL 12 (95)
T ss_pred hhHHHHHHHH
Confidence 5555544443
No 179
>KOG1729 consensus FYVE finger containing protein [General function prediction only]
Probab=26.92 E-value=12 Score=34.77 Aligned_cols=39 Identities=26% Similarity=0.589 Sum_probs=30.4
Q ss_pred cccccccccccccCCeeEEeCCCCccChhhHHHHHhcCC
Q 024005 209 ELTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQQG 247 (274)
Q Consensus 209 ~~~C~ICLe~~~~~~~v~~lpCgH~FH~~CI~~WL~~~~ 247 (274)
...|.+|++.+..+......-|..+||..|+..|+....
T Consensus 214 ~rvC~~CF~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (288)
T KOG1729|consen 214 IRVCDICFEELEKGARGDREDSLPVFHGKCYPNWLTTGA 252 (288)
T ss_pred ceecHHHHHHHhcccccchhhcccccccccccccccccc
Confidence 348999999998655555666666999999999987644
No 180
>PLN02915 cellulose synthase A [UDP-forming], catalytic subunit
Probab=26.82 E-value=1.1e+02 Score=33.51 Aligned_cols=51 Identities=25% Similarity=0.457 Sum_probs=34.0
Q ss_pred CcccccccccccccC---CeeEEeC-CCCccChhhHHHHH-hcCCCCccccccccC
Q 024005 208 DELTCTVCLEQVNVG---EIVRSLP-CLHQFHANCIDPWL-RQQGTCPVCKLRAGS 258 (274)
Q Consensus 208 e~~~C~ICLe~~~~~---~~v~~lp-CgH~FH~~CI~~WL-~~~~tCPlCR~~i~~ 258 (274)
....|-||=+++... +.-.... |+--.|..|.+-=. ..++.||-||+....
T Consensus 14 ~~~~c~iCGd~vg~~~~Ge~FVAC~eC~fpvCr~cyeye~~~g~~~cp~c~t~y~~ 69 (1044)
T PLN02915 14 DAKTCRVCGDEVGVKEDGQPFVACHVCGFPVCKPCYEYERSEGNQCCPQCNTRYKR 69 (1044)
T ss_pred CcchhhccccccCcCCCCCEEEEeccCCCccccchhhhhhhcCCccCCccCCchhh
Confidence 456899999997533 3322222 77778999984322 235689999998763
No 181
>PF14169 YdjO: Cold-inducible protein YdjO
Probab=26.68 E-value=30 Score=24.39 Aligned_cols=15 Identities=40% Similarity=0.756 Sum_probs=11.2
Q ss_pred CCCCccccccccCCC
Q 024005 246 QGTCPVCKLRAGSGW 260 (274)
Q Consensus 246 ~~tCPlCR~~i~~~~ 260 (274)
...||+|+.+...+.
T Consensus 39 ~p~CPlC~s~M~~~~ 53 (59)
T PF14169_consen 39 EPVCPLCKSPMVSGT 53 (59)
T ss_pred CccCCCcCCccccce
Confidence 357999998876553
No 182
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=26.60 E-value=12 Score=34.28 Aligned_cols=47 Identities=30% Similarity=0.501 Sum_probs=36.0
Q ss_pred cccccccccccccC-C--eeEEeC--------CCCccChhhHHHHHhcC-CCCcccccc
Q 024005 209 ELTCTVCLEQVNVG-E--IVRSLP--------CLHQFHANCIDPWLRQQ-GTCPVCKLR 255 (274)
Q Consensus 209 ~~~C~ICLe~~~~~-~--~v~~lp--------CgH~FH~~CI~~WL~~~-~tCPlCR~~ 255 (274)
...|.||...+... . .-+.+. |+|..|..|+..-+.+. ..||.|++.
T Consensus 207 ~~~c~ic~~~~~~n~~~~~p~vl~~~~~~~~~c~htlc~~c~~~~l~~~~~~cp~~~~~ 265 (296)
T KOG4185|consen 207 EKLCEICERIYSENDEKLAPLVLSLSRLKEKIEGHTLCKECIDTILLQAGIKCPFCTWS 265 (296)
T ss_pred HHHHHHHHHHhhccccccchhHHHHHHHHHHHHHHHHHhcchHHHHHHhhhcCCcccce
Confidence 45799999998832 2 223455 99999999999987665 489999874
No 183
>PF07219 HemY_N: HemY protein N-terminus; InterPro: IPR010817 This entry represents the N terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins. These are membrane protein involved in a late step of protoheme IX synthesis [].
Probab=26.50 E-value=2.3e+02 Score=21.77 Aligned_cols=39 Identities=26% Similarity=0.506 Sum_probs=21.0
Q ss_pred CcccCcchhHHHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHHhh
Q 024005 31 GRPVNSNSLAFLVTVLLLFMILNSHQMSSNFLLWIVLGIFLLATSL 76 (274)
Q Consensus 31 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~a~~l 76 (274)
+--+.++-..+++.++++|.++ .+++|++-.++-+-..+
T Consensus 9 ~~~ie~sl~~~~~~l~~~~~~l-------~ll~~ll~~~~~~p~~~ 47 (108)
T PF07219_consen 9 GYRIETSLWVALILLLLLFVVL-------YLLLRLLRRLLSLPSRV 47 (108)
T ss_pred CEEEEeeHHHHHHHHHHHHHHH-------HHHHHHHHHHHhChHHH
Confidence 3345566666666666666666 33445544444444333
No 184
>KOG1245 consensus Chromatin remodeling complex WSTF-ISWI, large subunit (contains heterochromatin localization, PHD and BROMO domains) [Chromatin structure and dynamics]
Probab=26.09 E-value=21 Score=40.12 Aligned_cols=50 Identities=26% Similarity=0.580 Sum_probs=39.7
Q ss_pred CCcccccccccccccCCeeEEeCCCCccChhhHHHHHhcCC----CCccccccc
Q 024005 207 EDELTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQQG----TCPVCKLRA 256 (274)
Q Consensus 207 ~e~~~C~ICLe~~~~~~~v~~lpCgH~FH~~CI~~WL~~~~----tCPlCR~~i 256 (274)
.....|-+|.......+.+.+.-|.-.||..|+++-+.... .||-|+..-
T Consensus 1106 ~~~~~c~~cr~k~~~~~m~lc~~c~~~~h~~C~rp~~~~~~~~dW~C~~c~~e~ 1159 (1404)
T KOG1245|consen 1106 AVNALCKVCRRKKQDEKMLLCDECLSGFHLFCLRPALSSVPPGDWMCPSCRKEH 1159 (1404)
T ss_pred cchhhhhhhhhcccchhhhhhHhhhhhHHHHhhhhhhccCCcCCccCCccchhh
Confidence 45678999999987765555666899999999999887643 699998755
No 185
>KOG3799 consensus Rab3 effector RIM1 and related proteins, contain Rab3a binding domain [Intracellular trafficking, secretion, and vesicular transport]
Probab=25.45 E-value=18 Score=29.90 Aligned_cols=49 Identities=27% Similarity=0.538 Sum_probs=26.3
Q ss_pred CCcccccccccc-cccCCeeEEeCCCCccChhhHHHH-HhcCC---CCcccccc
Q 024005 207 EDELTCTVCLEQ-VNVGEIVRSLPCLHQFHANCIDPW-LRQQG---TCPVCKLR 255 (274)
Q Consensus 207 ~e~~~C~ICLe~-~~~~~~v~~lpCgH~FH~~CI~~W-L~~~~---tCPlCR~~ 255 (274)
.++.+|-||+.. |..|-...+.=|.--||..|--+. |+.++ .|-+|+..
T Consensus 63 ~ddatC~IC~KTKFADG~GH~C~YCq~r~CARCGGrv~lrsNKv~wvcnlc~k~ 116 (169)
T KOG3799|consen 63 GDDATCGICHKTKFADGCGHNCSYCQTRFCARCGGRVSLRSNKVMWVCNLCRKQ 116 (169)
T ss_pred CcCcchhhhhhcccccccCcccchhhhhHHHhcCCeeeeccCceEEeccCCcHH
Confidence 577899999865 333311111224444566664443 23233 48888763
No 186
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=25.24 E-value=46 Score=29.93 Aligned_cols=25 Identities=28% Similarity=0.542 Sum_probs=18.0
Q ss_pred ccccccccccccCCeeEEeCCCCcc
Q 024005 210 LTCTVCLEQVNVGEIVRSLPCLHQF 234 (274)
Q Consensus 210 ~~C~ICLe~~~~~~~v~~lpCgH~F 234 (274)
..|++|...+...+.-.+-+++|.|
T Consensus 3 ~~CP~C~~~l~~~~~~~~C~~~h~f 27 (272)
T PRK11088 3 YQCPLCHQPLTLEENSWICPQNHQF 27 (272)
T ss_pred ccCCCCCcchhcCCCEEEcCCCCCC
Confidence 4799999999765543444458888
No 187
>PF04216 FdhE: Protein involved in formate dehydrogenase formation; InterPro: IPR006452 This family of sequences describe an accessory protein required for the assembly of formate dehydrogenase of certain proteobacteria although not present in the final complex []. The exact nature of the function of FdhE in the assembly of the complex is unknown, but considering the presence of selenocysteine, molybdopterin, iron-sulphur clusters and cytochrome b556, it is likely to be involved in the insertion of cofactors. ; GO: 0005737 cytoplasm; PDB: 2FIY_B.
Probab=24.55 E-value=9.4 Score=35.08 Aligned_cols=48 Identities=17% Similarity=0.232 Sum_probs=19.0
Q ss_pred CcccccccccccccCCeeEEe--CCCCccChhhHHHHHhcCCCCcccccc
Q 024005 208 DELTCTVCLEQVNVGEIVRSL--PCLHQFHANCIDPWLRQQGTCPVCKLR 255 (274)
Q Consensus 208 e~~~C~ICLe~~~~~~~v~~l--pCgH~FH~~CI~~WL~~~~tCPlCR~~ 255 (274)
....|+||=..-..+.....- .-.+.+|.-|-.+|--....||.|-..
T Consensus 171 ~~g~CPvCGs~P~~s~l~~~~~~G~R~L~Cs~C~t~W~~~R~~Cp~Cg~~ 220 (290)
T PF04216_consen 171 QRGYCPVCGSPPVLSVLRGGEREGKRYLHCSLCGTEWRFVRIKCPYCGNT 220 (290)
T ss_dssp T-SS-TTT---EEEEEEE------EEEEEETTT--EEE--TTS-TTT---
T ss_pred cCCcCCCCCCcCceEEEecCCCCccEEEEcCCCCCeeeecCCCCcCCCCC
Confidence 346899996654322100000 013446677888887777789999443
No 188
>KOG2979 consensus Protein involved in DNA repair [General function prediction only]
Probab=24.37 E-value=40 Score=30.75 Aligned_cols=43 Identities=21% Similarity=0.216 Sum_probs=32.3
Q ss_pred CcccccccccccccCCeeEEeCCCCccChhhHHHHHhcCC--CCccc
Q 024005 208 DELTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQQG--TCPVC 252 (274)
Q Consensus 208 e~~~C~ICLe~~~~~~~v~~lpCgH~FH~~CI~~WL~~~~--tCPlC 252 (274)
-...|+|=...+..+ ++.-.|+|+|-.+-|.+.+.... .||+=
T Consensus 175 fs~rdPis~~~I~nP--viSkkC~HvydrDsI~~~l~~~~~i~CPv~ 219 (262)
T KOG2979|consen 175 FSNRDPISKKPIVNP--VISKKCGHVYDRDSIMQILCDEITIRCPVL 219 (262)
T ss_pred hcccCchhhhhhhch--hhhcCcCcchhhhhHHHHhccCceeecccc
Confidence 345788877777644 55566999999999999987744 47763
No 189
>PF14311 DUF4379: Domain of unknown function (DUF4379)
Probab=24.32 E-value=43 Score=22.68 Aligned_cols=22 Identities=32% Similarity=0.809 Sum_probs=11.6
Q ss_pred CCCccChhhHHHHHhcCCCCccc
Q 024005 230 CLHQFHANCIDPWLRQQGTCPVC 252 (274)
Q Consensus 230 CgH~FH~~CI~~WL~~~~tCPlC 252 (274)
|||.|-..= ..-......||.|
T Consensus 34 Cgh~w~~~v-~~R~~~~~~CP~C 55 (55)
T PF14311_consen 34 CGHEWKASV-NDRTRRGKGCPYC 55 (55)
T ss_pred CCCeeEccH-hhhccCCCCCCCC
Confidence 555554322 2222456679988
No 190
>PHA02688 ORF059 IMV protein VP55; Provisional
Probab=24.20 E-value=93 Score=29.29 Aligned_cols=16 Identities=25% Similarity=0.580 Sum_probs=12.0
Q ss_pred chhHHHHHHHHHHHHH
Q 024005 58 SSNFLLWIVLGIFLLA 73 (274)
Q Consensus 58 ~~~~~~~~~~~~f~~a 73 (274)
.-+=|+|.+.|.|+-+
T Consensus 306 vnSkLlWFLaG~l~ty 321 (323)
T PHA02688 306 VNSKLLWFLAGTLFTY 321 (323)
T ss_pred CCchHHHHHHHhHHhe
Confidence 4467899999988643
No 191
>PF10083 DUF2321: Uncharacterized protein conserved in bacteria (DUF2321); InterPro: IPR016891 This entry is represented by Bacteriophage 'Lactobacillus prophage Lj928', Orf-Ljo1454. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=24.18 E-value=43 Score=28.26 Aligned_cols=50 Identities=18% Similarity=0.419 Sum_probs=32.4
Q ss_pred cccccccccCCeeEEeC-CCCccChhhHHHHHhcCCCCccccccccCCCCCCCC
Q 024005 213 TVCLEQVNVGEIVRSLP-CLHQFHANCIDPWLRQQGTCPVCKLRAGSGWHETRQ 265 (274)
Q Consensus 213 ~ICLe~~~~~~~v~~lp-CgH~FH~~CI~~WL~~~~tCPlCR~~i~~~~~~~~~ 265 (274)
.||+..-...+..-.-| =.+.||..|-.+-+ ..||.|..+|.-.++.+.-
T Consensus 8 qiC~NGH~~t~~~~~~p~~~~~fC~kCG~~tI---~~Cp~C~~~IrG~y~v~gv 58 (158)
T PF10083_consen 8 QICLNGHVITDSYDKNPELREKFCSKCGAKTI---TSCPNCSTPIRGDYHVEGV 58 (158)
T ss_pred HHccCccccccccccCchHHHHHHHHhhHHHH---HHCcCCCCCCCCceecCCe
Confidence 46666544443333333 34679999977643 3599999999888776543
No 192
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=24.03 E-value=53 Score=29.44 Aligned_cols=25 Identities=28% Similarity=0.628 Sum_probs=15.7
Q ss_pred ChhhHHHHHhcCCCCccccccccCC
Q 024005 235 HANCIDPWLRQQGTCPVCKLRAGSG 259 (274)
Q Consensus 235 H~~CI~~WL~~~~tCPlCR~~i~~~ 259 (274)
|.+|-.+--+.-..||+||.+--++
T Consensus 197 C~sC~qqIHRNAPiCPlCK~KsRSr 221 (230)
T PF10146_consen 197 CQSCHQQIHRNAPICPLCKAKSRSR 221 (230)
T ss_pred hHhHHHHHhcCCCCCcccccccccC
Confidence 4455444444567999998765443
No 193
>PF11118 DUF2627: Protein of unknown function (DUF2627); InterPro: IPR020138 This entry represents uncharacterised membrane proteins with no known function.
Probab=23.72 E-value=2.5e+02 Score=20.87 Aligned_cols=30 Identities=33% Similarity=0.534 Sum_probs=21.9
Q ss_pred HHHHhccCCCchhHHHHH--HHHHHHHHHhhhHHHH
Q 024005 48 LFMILNSHQMSSNFLLWI--VLGIFLLATSLRMYAT 81 (274)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~--~~~~f~~a~~l~~y~~ 81 (274)
+|-++. +|.-.+|+ +.|+++++.++...+.
T Consensus 28 ~F~~~~----~p~~~lwlqfl~G~~lf~~G~~Fi~G 59 (77)
T PF11118_consen 28 VFGILF----SPFPSLWLQFLAGLLLFAIGVGFIAG 59 (77)
T ss_pred HHHHhc----CCchhHHHHHHHHHHHHHHHHHHHHh
Confidence 677774 35556687 8899999987776665
No 194
>PRK14584 hmsS hemin storage system protein; Provisional
Probab=23.66 E-value=2.2e+02 Score=23.91 Aligned_cols=50 Identities=30% Similarity=0.242 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHhccCCCchhH-------HHHHH---HHH-HHHHHhhhHHHHHHHHHHHH
Q 024005 40 AFLVTVLLLFMILNSHQMSSNF-------LLWIV---LGI-FLLATSLRMYATCQQLHAQA 89 (274)
Q Consensus 40 ~~l~~~~~~~~~~~~~~~~~~~-------~~~~~---~~~-f~~a~~l~~y~~~~~lq~~~ 89 (274)
+||+.-.++-|+.+++.|-|.. -+|.+ +.+ .+-|..|..||.+.|++.+.
T Consensus 30 i~l~~~~~~~~~~~~~~~gp~~~~~~~~s~~~tl~~yl~ial~nAvlLI~WA~YN~~RF~~ 90 (153)
T PRK14584 30 LFLLVRGLLEMISRAPHMGPIPLRIYILSGLTTIALYLAIAAFNAVLLIIWAKYNQVRFQV 90 (153)
T ss_pred HHHHHHHHHHHhccCcccCCcchhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3444444455566667766662 23422 222 23344788899999988543
No 195
>PF02318 FYVE_2: FYVE-type zinc finger; InterPro: IPR003315 This entry represents the zinc-binding domain found in rabphilin Rab3A. The small G protein Rab3A plays an important role in the regulation of neurotransmitter release. The crystal structure of the small G protein Rab3A complexed with the effector domain of rabphilin-3A shows that the effector domain of rabphilin-3A contacts Rab3A in two distinct areas. The first interface involves the Rab3A switch I and switch II regions, which are sensitive to the nucleotide-binding state of Rab3A. The second interface consists of a deep pocket in Rab3A that interacts with a SGAWFF structural element of rabphilin-3A. Sequence and structure analysis, and biochemical data suggest that this pocket, or Rab complementarity-determining region (RabCDR), establishes a specific interaction between each Rab protein and its effectors. It has been suggested that RabCDRs could be major determinants of effector specificity during vesicle trafficking and fusion [].; GO: 0008270 zinc ion binding, 0017137 Rab GTPase binding, 0006886 intracellular protein transport; PDB: 2CSZ_A 2ZET_C 1ZBD_B 3BC1_B 2CJS_C 2A20_A.
Probab=23.59 E-value=52 Score=26.04 Aligned_cols=45 Identities=20% Similarity=0.420 Sum_probs=28.3
Q ss_pred Ccccccccccccc--cCCeeEEeCCCCccChhhHHHHHhcCC---CCccccc
Q 024005 208 DELTCTVCLEQVN--VGEIVRSLPCLHQFHANCIDPWLRQQG---TCPVCKL 254 (274)
Q Consensus 208 e~~~C~ICLe~~~--~~~~v~~lpCgH~FH~~CI~~WL~~~~---tCPlCR~ 254 (274)
.+..|.+|...|. .+.......|.|.+|..|-.. ..+. .|-+|.+
T Consensus 53 ~~~~C~~C~~~fg~l~~~~~~C~~C~~~VC~~C~~~--~~~~~~WlC~vC~k 102 (118)
T PF02318_consen 53 GERHCARCGKPFGFLFNRGRVCVDCKHRVCKKCGVY--SKKEPIWLCKVCQK 102 (118)
T ss_dssp CCSB-TTTS-BCSCTSTTCEEETTTTEEEETTSEEE--TSSSCCEEEHHHHH
T ss_pred CCcchhhhCCcccccCCCCCcCCcCCccccCccCCc--CCCCCCEEChhhHH
Confidence 4558999998763 233455666999999999544 2222 4877754
No 196
>PF07599 DUF1563: Protein of unknown function (DUF1563); InterPro: IPR011457 This is a small family of short hypothetical proteins in Leptospira interrogans.
Probab=23.48 E-value=1.1e+02 Score=19.65 Aligned_cols=19 Identities=47% Similarity=0.747 Sum_probs=14.4
Q ss_pred HHHHHHHHHHhhhHHHHHH
Q 024005 65 IVLGIFLLATSLRMYATCQ 83 (274)
Q Consensus 65 ~~~~~f~~a~~l~~y~~~~ 83 (274)
+++++||+.+-=-.|+++.
T Consensus 4 iL~~FFLL~TLeNlYatyv 22 (43)
T PF07599_consen 4 ILIGFFLLETLENLYATYV 22 (43)
T ss_pred hhhHHHHHHHHHHHHHHHH
Confidence 4678888888667777766
No 197
>PF10852 DUF2651: Protein of unknown function (DUF2651) ; InterPro: IPR020258 This entry contains transmembrane proteins with no known function.
Probab=23.28 E-value=1.5e+02 Score=22.26 Aligned_cols=29 Identities=28% Similarity=0.599 Sum_probs=19.8
Q ss_pred HHHHHhccCCCchhHHHHHH-HHHHHHHHh
Q 024005 47 LLFMILNSHQMSSNFLLWIV-LGIFLLATS 75 (274)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~-~~~f~~a~~ 75 (274)
++|.++..--.+|.|+.|++ ..+|-++.|
T Consensus 38 ~i~Lil~~t~fn~SFf~WvvvYT~~s~i~S 67 (82)
T PF10852_consen 38 AISLILTFTLFNPSFFFWVVVYTIFSFIVS 67 (82)
T ss_pred HHHHHHHHHhhChHHHHHHHHHHHHHHHHH
Confidence 35566666677999999994 555555553
No 198
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=23.23 E-value=1.5e+02 Score=24.92 Aligned_cols=34 Identities=18% Similarity=0.244 Sum_probs=17.7
Q ss_pred HHHHhccCCCchhHH-----HHHHHHHHHHHHhhhHHHH
Q 024005 48 LFMILNSHQMSSNFL-----LWIVLGIFLLATSLRMYAT 81 (274)
Q Consensus 48 ~~~~~~~~~~~~~~~-----~~~~~~~f~~a~~l~~y~~ 81 (274)
++.++..+++++.+. .++.+|+++++.++...-.
T Consensus 24 ~~Lv~~~~~l~~~~s~~lg~~~lAlg~vL~~~g~~~~~~ 62 (191)
T PF04156_consen 24 AALVLFISGLGALISFILGIALLALGVVLLSLGLLCLLS 62 (191)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444333 3444667777776655543
No 199
>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center. The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=22.97 E-value=47 Score=20.18 Aligned_cols=10 Identities=40% Similarity=0.909 Sum_probs=7.0
Q ss_pred cCCCCccccc
Q 024005 245 QQGTCPVCKL 254 (274)
Q Consensus 245 ~~~tCPlCR~ 254 (274)
....||+|..
T Consensus 16 ~~~~CP~Cg~ 25 (33)
T cd00350 16 APWVCPVCGA 25 (33)
T ss_pred CCCcCcCCCC
Confidence 3447999965
No 200
>PF09723 Zn-ribbon_8: Zinc ribbon domain; InterPro: IPR013429 This entry represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB []. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.
Probab=22.85 E-value=25 Score=22.67 Aligned_cols=26 Identities=27% Similarity=0.519 Sum_probs=15.2
Q ss_pred EeCCCCccChhh-HHHHHhcCCCCccccc
Q 024005 227 SLPCLHQFHANC-IDPWLRQQGTCPVCKL 254 (274)
Q Consensus 227 ~lpCgH~FH~~C-I~~WL~~~~tCPlCR~ 254 (274)
...|||.|-... +.. .....||.|..
T Consensus 8 C~~Cg~~fe~~~~~~~--~~~~~CP~Cg~ 34 (42)
T PF09723_consen 8 CEECGHEFEVLQSISE--DDPVPCPECGS 34 (42)
T ss_pred eCCCCCEEEEEEEcCC--CCCCcCCCCCC
Confidence 345888776432 111 23457999977
No 201
>PF11125 DUF2830: Protein of unknown function (DUF2830); InterPro: IPR022599 This entry represents putative lysis proteins from Bacteriophage MS2 and Bacteriophage BZ13. The bacteriophage MS2 lysin protein COM1L5 from SWISSPROT was identified as an overlapping cistron in the bacteriophage MS2 RNA [].
Probab=22.74 E-value=2.5e+02 Score=18.99 Aligned_cols=21 Identities=14% Similarity=0.175 Sum_probs=13.9
Q ss_pred CCchhHHHHHHHHHHHHHHhh
Q 024005 56 QMSSNFLLWIVLGIFLLATSL 76 (274)
Q Consensus 56 ~~~~~~~~~~~~~~f~~a~~l 76 (274)
+++.-|+.|+.-.+++..++|
T Consensus 29 ~FTn~~~~~l~~llI~iv~TL 49 (54)
T PF11125_consen 29 KFTNQLLHSLWGLLIRIVTTL 49 (54)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 355568888877766666543
No 202
>PF06667 PspB: Phage shock protein B; InterPro: IPR009554 This family consists of several bacterial phage shock protein B (PspB) sequences. The phage shock protein (psp) operon is induced in response to heat, ethanol, osmotic shock and infection by filamentous bacteriophages []. Expression of the operon requires the alternative sigma factor sigma54 and the transcriptional activator PspF. In addition, PspA plays a negative regulatory role, and the integral-membrane proteins PspB and PspC play a positive one [].; GO: 0006355 regulation of transcription, DNA-dependent, 0009271 phage shock
Probab=22.67 E-value=1.4e+02 Score=22.06 Aligned_cols=14 Identities=43% Similarity=0.885 Sum_probs=9.9
Q ss_pred hHHHHHHHHHHHHh
Q 024005 39 LAFLVTVLLLFMIL 52 (274)
Q Consensus 39 ~~~l~~~~~~~~~~ 52 (274)
..||+..+++|+++
T Consensus 3 ~~fl~~plivf~if 16 (75)
T PF06667_consen 3 FEFLFVPLIVFMIF 16 (75)
T ss_pred hHHHHHHHHHHHHH
Confidence 35677777777777
No 203
>KOG4451 consensus Uncharacterized conserved protein (tumor-associated antigen HCA127 in humans) [Function unknown]
Probab=22.55 E-value=52 Score=29.62 Aligned_cols=25 Identities=28% Similarity=0.630 Sum_probs=16.3
Q ss_pred cChhhHHHHHhcCCCCccccccccC
Q 024005 234 FHANCIDPWLRQQGTCPVCKLRAGS 258 (274)
Q Consensus 234 FH~~CI~~WL~~~~tCPlCR~~i~~ 258 (274)
.|.+|-.+--+.-.+||+||.+-.+
T Consensus 251 ~ClsChqqIHRNAPiCPlCKaKsRS 275 (286)
T KOG4451|consen 251 VCLSCHQQIHRNAPICPLCKAKSRS 275 (286)
T ss_pred HHHHHHHHHhcCCCCCcchhhcccc
Confidence 3455555554567799999876543
No 204
>KOG2071 consensus mRNA cleavage and polyadenylation factor I/II complex, subunit Pcf11 [RNA processing and modification]
Probab=22.30 E-value=42 Score=34.03 Aligned_cols=36 Identities=28% Similarity=0.556 Sum_probs=24.9
Q ss_pred CCcccccccccccccC-----------CeeEEeCCCCccChhhHHHHH
Q 024005 207 EDELTCTVCLEQVNVG-----------EIVRSLPCLHQFHANCIDPWL 243 (274)
Q Consensus 207 ~e~~~C~ICLe~~~~~-----------~~v~~lpCgH~FH~~CI~~WL 243 (274)
+....|+||.|.|..- +.+ .+.=|-+||..|+..--
T Consensus 511 e~~~~C~IC~EkFe~v~d~e~~~Wm~kdaV-~le~G~ifH~~Cl~e~~ 557 (579)
T KOG2071|consen 511 ERQASCPICQEKFEVVFDQEEDLWMYKDAV-YLEFGRIFHSKCLSEKR 557 (579)
T ss_pred ccccCCcccccccceeecchhhheeeccee-eeccCceeeccccchHH
Confidence 5667899999998522 122 23268899999987753
No 205
>PF12113 SVM_signal: SVM protein signal sequence; InterPro: IPR021970 This domain is presumed to be a signal peptide sequence found in Sequence-variable mosaic (SVM) proteins []. It is found in phytoplasmas. This presumed signal sequence is about 30 amino acids in length.
Probab=22.29 E-value=59 Score=20.20 Aligned_cols=18 Identities=44% Similarity=0.646 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHhccCCC
Q 024005 40 AFLVTVLLLFMILNSHQM 57 (274)
Q Consensus 40 ~~l~~~~~~~~~~~~~~~ 57 (274)
++|++++-+|.|.|.+|+
T Consensus 13 i~Lf~~LGL~fI~NN~qv 30 (33)
T PF12113_consen 13 IFLFIFLGLFFITNNNQV 30 (33)
T ss_pred hHHHHHHHHHheecCcee
Confidence 566666777777777664
No 206
>PF09943 DUF2175: Uncharacterized protein conserved in archaea (DUF2175); InterPro: IPR018686 This family of various hypothetical archaeal proteins has no known function.
Probab=21.83 E-value=75 Score=24.87 Aligned_cols=33 Identities=15% Similarity=0.347 Sum_probs=26.3
Q ss_pred cccccccccccCCeeEEeCCCCccChhhHHHHHh
Q 024005 211 TCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLR 244 (274)
Q Consensus 211 ~C~ICLe~~~~~~~v~~lpCgH~FH~~CI~~WL~ 244 (274)
+|.||-.++..|+..+.++= -..|..|+..=..
T Consensus 4 kC~iCg~~I~~gqlFTF~~k-G~VH~~C~~~~~~ 36 (101)
T PF09943_consen 4 KCYICGKPIYEGQLFTFTKK-GPVHYECFREKAS 36 (101)
T ss_pred EEEecCCeeeecceEEEecC-CcEeHHHHHHHHh
Confidence 79999999998877666655 5689999877543
No 207
>PLN02248 cellulose synthase-like protein
Probab=21.81 E-value=75 Score=34.85 Aligned_cols=33 Identities=27% Similarity=0.537 Sum_probs=27.4
Q ss_pred EeC--CCCccChhhHHHHHhcCCCCccccccccCC
Q 024005 227 SLP--CLHQFHANCIDPWLRQQGTCPVCKLRAGSG 259 (274)
Q Consensus 227 ~lp--CgH~FH~~CI~~WL~~~~tCPlCR~~i~~~ 259 (274)
.+| |+...|.+|...-++....||-||.+....
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (1135)
T PLN02248 145 LLPCECGFKICRDCYIDAVKSGGICPGCKEPYKVT 179 (1135)
T ss_pred CCcccccchhHHhHhhhhhhcCCCCCCCccccccc
Confidence 455 677889999999999999999999987543
No 208
>KOG1512 consensus PHD Zn-finger protein [General function prediction only]
Probab=21.74 E-value=41 Score=31.30 Aligned_cols=33 Identities=24% Similarity=0.378 Sum_probs=25.5
Q ss_pred CcccccccccccccCCeeEEeCCCCccChhhHH
Q 024005 208 DELTCTVCLEQVNVGEIVRSLPCLHQFHANCID 240 (274)
Q Consensus 208 e~~~C~ICLe~~~~~~~v~~lpCgH~FH~~CI~ 240 (274)
+-..|.||.......+.+.+--|...||.-|+-
T Consensus 313 ~C~lC~IC~~P~~E~E~~FCD~CDRG~HT~CVG 345 (381)
T KOG1512|consen 313 SCELCRICLGPVIESEHLFCDVCDRGPHTLCVG 345 (381)
T ss_pred ccHhhhccCCcccchheeccccccCCCCccccc
Confidence 456788998888877666666688889998863
No 209
>PF03213 Pox_P35: Poxvirus P35 protein; InterPro: IPR004900 The Poxvirus P35 protein is an immunodominant envelope protein. It binds to heparan sulphate on the cell surface to provide virion attachment to target cell [].; GO: 0019031 viral envelope
Probab=21.54 E-value=1.1e+02 Score=28.77 Aligned_cols=15 Identities=33% Similarity=0.769 Sum_probs=10.8
Q ss_pred chhHHHHHHHHHHHH
Q 024005 58 SSNFLLWIVLGIFLL 72 (274)
Q Consensus 58 ~~~~~~~~~~~~f~~ 72 (274)
.-+=++|.+.|.|+-
T Consensus 308 vnSkllWFLaG~l~t 322 (325)
T PF03213_consen 308 VNSKLLWFLAGILFT 322 (325)
T ss_pred CCchHHHHHHHhHHh
Confidence 345678999888764
No 210
>PLN02195 cellulose synthase A
Probab=21.48 E-value=1.2e+02 Score=32.95 Aligned_cols=49 Identities=20% Similarity=0.395 Sum_probs=32.7
Q ss_pred cccccccccccccC---CeeEE-eCCCCccChhhHHHHH-hcCCCCcccccccc
Q 024005 209 ELTCTVCLEQVNVG---EIVRS-LPCLHQFHANCIDPWL-RQQGTCPVCKLRAG 257 (274)
Q Consensus 209 ~~~C~ICLe~~~~~---~~v~~-lpCgH~FH~~CI~~WL-~~~~tCPlCR~~i~ 257 (274)
...|-||=+.+... +.... --|+--.|..|.+-=- ..++.||-||+...
T Consensus 6 ~~~c~~cgd~~~~~~~g~~fvaC~eC~~pvCrpCyeyer~eg~q~CpqCkt~Yk 59 (977)
T PLN02195 6 APICATCGEEVGVDSNGEAFVACHECSYPLCKACLEYEIKEGRKVCLRCGGPYD 59 (977)
T ss_pred CccceecccccCcCCCCCeEEEeccCCCccccchhhhhhhcCCccCCccCCccc
Confidence 34799999877533 33322 2377778999983221 23567999998877
No 211
>PF11023 DUF2614: Protein of unknown function (DUF2614); InterPro: IPR020912 This entry describes proteins of unknown function, which are thought to be membrane proteins.; GO: 0005887 integral to plasma membrane
Probab=21.12 E-value=30 Score=27.63 Aligned_cols=19 Identities=21% Similarity=0.204 Sum_probs=14.1
Q ss_pred HHhcCCCCccccccccCCC
Q 024005 242 WLRQQGTCPVCKLRAGSGW 260 (274)
Q Consensus 242 WL~~~~tCPlCR~~i~~~~ 260 (274)
.+.+...|+.|++++.-..
T Consensus 81 mLGr~D~CM~C~~pLTLd~ 99 (114)
T PF11023_consen 81 MLGRVDACMHCKEPLTLDP 99 (114)
T ss_pred hhchhhccCcCCCcCccCc
Confidence 4556678999999987543
No 212
>PF07895 DUF1673: Protein of unknown function (DUF1673); InterPro: IPR012874 This family contains hypothetical proteins of unknown function found in Methanosarcina acetivorans and Methanosarcina mazei.
Probab=21.11 E-value=1.8e+02 Score=25.43 Aligned_cols=30 Identities=20% Similarity=0.127 Sum_probs=17.3
Q ss_pred CCCchhHHHHHHHHHHHHHHhhhHHHHHHHH
Q 024005 55 HQMSSNFLLWIVLGIFLLATSLRMYATCQQL 85 (274)
Q Consensus 55 ~~~~~~~~~~~~~~~f~~a~~l~~y~~~~~l 85 (274)
.++...+..|.++.+++-...+ |+..+-|+
T Consensus 147 ~~~~~~~~~~~~~sfl~g~~~~-~wl~y~q~ 176 (205)
T PF07895_consen 147 GQIESFISFQSLLSFLSGLLLL-MWLVYFQI 176 (205)
T ss_pred HHHHHHhhHHHHHHHHHHHHHH-HHHHHHHH
Confidence 3566667777766665444434 66655444
No 213
>KOG2169 consensus Zn-finger transcription factor [Transcription]
Probab=20.70 E-value=50 Score=34.03 Aligned_cols=41 Identities=32% Similarity=0.573 Sum_probs=24.5
Q ss_pred ccccccccccccCCeeEEeCCCCccCh--hhHHH-HHhc----CC--CCcccccccc
Q 024005 210 LTCTVCLEQVNVGEIVRSLPCLHQFHA--NCIDP-WLRQ----QG--TCPVCKLRAG 257 (274)
Q Consensus 210 ~~C~ICLe~~~~~~~v~~lpCgH~FH~--~CI~~-WL~~----~~--tCPlCR~~i~ 257 (274)
..|+|+... ..+||.+..|+ .|-+. |+-. .. .||+|.+.+.
T Consensus 307 L~CPl~~~R-------m~~P~r~~~CkHlQcFD~~~~lq~n~~~pTW~CPVC~~~~~ 356 (636)
T KOG2169|consen 307 LNCPLSKMR-------MSLPARGHTCKHLQCFDALSYLQMNEQKPTWRCPVCQKAAP 356 (636)
T ss_pred ecCCcccce-------eecCCcccccccceecchhhhHHhccCCCeeeCccCCcccc
Confidence 466666555 34666655554 77665 4422 22 5999977654
No 214
>KOG2113 consensus Predicted RNA binding protein, contains KH domain [General function prediction only]
Probab=20.68 E-value=71 Score=30.13 Aligned_cols=44 Identities=9% Similarity=-0.158 Sum_probs=32.3
Q ss_pred cccccccccccccCCeeEEeCCCC-ccChhhHHHHHhcCCCCcccccccc
Q 024005 209 ELTCTVCLEQVNVGEIVRSLPCLH-QFHANCIDPWLRQQGTCPVCKLRAG 257 (274)
Q Consensus 209 ~~~C~ICLe~~~~~~~v~~lpCgH-~FH~~CI~~WL~~~~tCPlCR~~i~ 257 (274)
-.+|-.|-+..... ...+|+| .||.+|.. +.-..+||+|.....
T Consensus 343 ~~~~~~~~~~~~st---~~~~~~~n~~~~~~a~--~s~~~~~~~c~~~~~ 387 (394)
T KOG2113|consen 343 SLKGTSAGFGLLST---IWSGGNMNLSPGSLAS--ASASPTSSTCDHNDH 387 (394)
T ss_pred hcccccccCceeee---EeecCCcccChhhhhh--cccCCccccccccce
Confidence 45788887776544 5567998 57899976 667889999976543
No 215
>PHA00027 lys lysis protein
Probab=20.46 E-value=3e+02 Score=18.96 Aligned_cols=20 Identities=20% Similarity=0.305 Sum_probs=13.4
Q ss_pred CCchhHHHHHHHHHHHHHHh
Q 024005 56 QMSSNFLLWIVLGIFLLATS 75 (274)
Q Consensus 56 ~~~~~~~~~~~~~~f~~a~~ 75 (274)
+++.-|+.|++-.+++..++
T Consensus 33 ~FTn~~l~sil~~lI~~~~T 52 (58)
T PHA00027 33 DFTNIFLHSILEALILTLQT 52 (58)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45666888887766665553
No 216
>PF03303 WTF: WTF protein; InterPro: IPR004982 This is a family of mainly hypothetical Schizosacchoromyces pombe proteins that are often encoded near long terminal repeats within the genome. Their function is unknown but they contain several predicted transmembrane regions and at least one protein is up-regulated during meiosis []. Upregulation is also observed in histone deacetylase mutants, indicating their transcription is normally inhibited by hypoacetylation [].
Probab=20.17 E-value=2e+02 Score=25.90 Aligned_cols=25 Identities=28% Similarity=0.660 Sum_probs=15.8
Q ss_pred hhHHHHHHHHH------HHHHHhhhHHHHHH
Q 024005 59 SNFLLWIVLGI------FLLATSLRMYATCQ 83 (274)
Q Consensus 59 ~~~~~~~~~~~------f~~a~~l~~y~~~~ 83 (274)
..+.-|++.|+ +++...++.|.+=.
T Consensus 119 ~~~~ewvlfG~wc~~c~l~~i~l~~fYETWt 149 (247)
T PF03303_consen 119 YGFMEWVLFGIWCLTCTLLFIILTYFYETWT 149 (247)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35667777776 55555566677744
No 217
>PF10497 zf-4CXXC_R1: Zinc-finger domain of monoamine-oxidase A repressor R1; InterPro: IPR018866 R1 is a transcription factor repressor that inhibits monoamine oxidase A gene expression. This domain is a four-CXXC zinc finger putative DNA-binding domain found at the C-terminal end of R1. The domain carries 12 cysteines of which four pairs are of the CXXC type [].
Probab=20.07 E-value=1.1e+02 Score=23.83 Aligned_cols=24 Identities=21% Similarity=0.566 Sum_probs=18.6
Q ss_pred CCccChhhHHHHHhc---------CCCCccccc
Q 024005 231 LHQFHANCIDPWLRQ---------QGTCPVCKL 254 (274)
Q Consensus 231 gH~FH~~CI~~WL~~---------~~tCPlCR~ 254 (274)
.-.||..|+..++.. +-.||.||.
T Consensus 37 ~~~fC~~CL~~ryge~~~ev~~~~~W~CP~Crg 69 (105)
T PF10497_consen 37 RGKFCGGCLRNRYGENVEEVLEDPNWKCPKCRG 69 (105)
T ss_pred cceehHhHHHHHHhhhHHHHhcCCceECCCCCC
Confidence 667999999988743 236999986
Done!