Query 024005
Match_columns 274
No_of_seqs 215 out of 1931
Neff 6.9
Searched_HMMs 29240
Date Mon Mar 25 16:32:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024005.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/024005hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2l0b_A E3 ubiquitin-protein li 99.7 4.8E-17 1.6E-21 123.5 7.5 78 151-258 12-89 (91)
2 1x4j_A Ring finger protein 38; 99.6 1.4E-16 4.9E-21 116.2 3.1 53 207-259 21-73 (75)
3 2kiz_A E3 ubiquitin-protein li 99.5 6.5E-15 2.2E-19 105.4 6.1 54 207-260 12-65 (69)
4 2ep4_A Ring finger protein 24; 99.5 1.2E-14 4.3E-19 105.4 6.0 55 207-261 13-67 (74)
5 2ect_A Ring finger protein 126 99.5 1.4E-14 4.6E-19 106.2 6.1 56 207-262 13-68 (78)
6 1iym_A EL5; ring-H2 finger, ub 99.5 5.7E-15 1.9E-19 101.0 3.6 50 208-257 4-54 (55)
7 1v87_A Deltex protein 2; ring- 99.5 2.5E-14 8.4E-19 112.2 5.3 62 208-269 24-105 (114)
8 2ecl_A Ring-box protein 2; RNF 99.4 7.3E-14 2.5E-18 103.7 4.1 51 208-258 14-76 (81)
9 2ecm_A Ring finger and CHY zin 99.4 9.4E-14 3.2E-18 94.8 4.3 50 208-257 4-54 (55)
10 1chc_A Equine herpes virus-1 r 99.4 1.6E-13 5.5E-18 97.7 5.1 53 208-262 4-56 (68)
11 2ea6_A Ring finger protein 4; 99.4 1.1E-13 3.6E-18 98.5 4.1 52 207-258 13-68 (69)
12 3ng2_A RNF4, snurf, ring finge 99.4 1E-13 3.4E-18 99.4 3.6 54 207-260 8-65 (71)
13 2xeu_A Ring finger protein 4; 99.4 2.6E-13 8.8E-18 95.1 3.5 52 208-259 2-57 (64)
14 3dpl_R Ring-box protein 1; ubi 99.3 5.1E-13 1.7E-17 104.4 4.8 51 207-257 35-100 (106)
15 2djb_A Polycomb group ring fin 99.3 1.2E-12 4.1E-17 94.5 6.0 52 207-260 13-64 (72)
16 2d8t_A Dactylidin, ring finger 99.3 3.6E-13 1.2E-17 97.0 3.1 50 207-259 13-62 (71)
17 2ecn_A Ring finger protein 141 99.3 5.6E-13 1.9E-17 95.5 3.0 50 207-260 13-62 (70)
18 2csy_A Zinc finger protein 183 99.3 1.6E-12 5.4E-17 95.9 4.6 48 207-257 13-60 (81)
19 2d8s_A Cellular modulator of i 99.3 2.1E-12 7.1E-17 95.9 4.9 53 207-260 13-72 (80)
20 4ayc_A E3 ubiquitin-protein li 99.3 7.9E-13 2.7E-17 107.5 2.4 49 208-259 52-100 (138)
21 2yur_A Retinoblastoma-binding 99.3 3E-12 1E-16 93.0 5.3 49 207-258 13-64 (74)
22 2ecy_A TNF receptor-associated 99.3 2.7E-12 9.1E-17 91.0 4.6 50 207-259 13-63 (66)
23 2ct2_A Tripartite motif protei 99.3 3.8E-12 1.3E-16 94.8 5.3 53 207-259 13-69 (88)
24 2ysl_A Tripartite motif-contai 99.3 3.6E-12 1.2E-16 91.8 4.3 50 207-259 18-70 (73)
25 1t1h_A Gspef-atpub14, armadill 99.2 4.6E-12 1.6E-16 92.5 4.4 50 207-259 6-56 (78)
26 4a0k_B E3 ubiquitin-protein li 99.2 1.1E-12 3.8E-17 104.2 0.4 51 207-257 46-111 (117)
27 3lrq_A E3 ubiquitin-protein li 99.2 3.6E-12 1.2E-16 98.1 2.2 50 207-258 20-70 (100)
28 2ecw_A Tripartite motif-contai 99.2 1.6E-11 5.3E-16 90.4 5.5 50 207-259 17-72 (85)
29 2ysj_A Tripartite motif-contai 99.2 2.1E-11 7.2E-16 85.5 5.3 43 207-252 18-63 (63)
30 4ap4_A E3 ubiquitin ligase RNF 99.2 1E-11 3.5E-16 98.8 3.8 54 208-261 6-63 (133)
31 2ecv_A Tripartite motif-contai 99.2 2.8E-11 9.7E-16 89.0 5.7 50 207-259 17-72 (85)
32 2y43_A E3 ubiquitin-protein li 99.2 7.9E-12 2.7E-16 95.6 2.7 49 208-258 21-69 (99)
33 2egp_A Tripartite motif-contai 99.2 5.3E-12 1.8E-16 92.2 1.5 50 207-259 10-66 (79)
34 2ckl_A Polycomb group ring fin 99.2 1.5E-11 5E-16 95.6 4.1 51 207-259 13-63 (108)
35 3ztg_A E3 ubiquitin-protein li 99.1 3.2E-11 1.1E-15 90.7 5.3 48 207-257 11-61 (92)
36 3fl2_A E3 ubiquitin-protein li 99.1 1.2E-11 4.1E-16 98.4 3.0 48 208-258 51-99 (124)
37 1g25_A CDK-activating kinase a 99.1 2.9E-11 9.9E-16 85.4 3.9 52 208-259 2-56 (65)
38 2ecj_A Tripartite motif-contai 99.1 2.6E-11 8.8E-16 83.3 3.6 43 207-252 13-58 (58)
39 2ct0_A Non-SMC element 1 homol 99.1 7.9E-11 2.7E-15 86.1 4.5 51 207-259 13-65 (74)
40 1jm7_A BRCA1, breast cancer ty 99.1 3.9E-11 1.3E-15 93.2 2.9 49 208-259 20-71 (112)
41 2ckl_B Ubiquitin ligase protei 99.1 3.8E-11 1.3E-15 100.1 2.7 50 207-258 52-102 (165)
42 4ap4_A E3 ubiquitin ligase RNF 99.1 6.5E-11 2.2E-15 94.0 3.7 53 207-259 70-126 (133)
43 1z6u_A NP95-like ring finger p 99.1 5.5E-11 1.9E-15 98.2 3.1 49 208-259 77-126 (150)
44 3l11_A E3 ubiquitin-protein li 99.0 2.8E-11 9.7E-16 94.9 0.6 49 207-258 13-62 (115)
45 3hct_A TNF receptor-associated 99.0 8.4E-11 2.9E-15 92.8 3.2 50 207-259 16-66 (118)
46 2kr4_A Ubiquitin conjugation f 99.0 1.6E-10 5.6E-15 86.4 4.3 50 207-259 12-61 (85)
47 1e4u_A Transcriptional repress 99.0 3.7E-10 1.3E-14 83.3 5.2 54 207-261 9-65 (78)
48 1rmd_A RAG1; V(D)J recombinati 99.0 1.4E-10 4.8E-15 91.1 2.7 49 208-259 22-71 (116)
49 2kre_A Ubiquitin conjugation f 99.0 2.9E-10 1E-14 87.7 4.1 50 207-259 27-76 (100)
50 1wgm_A Ubiquitin conjugation f 99.0 4.1E-10 1.4E-14 86.5 4.4 50 207-259 20-70 (98)
51 2vje_A E3 ubiquitin-protein li 99.0 2.8E-10 9.4E-15 80.6 3.2 48 208-258 7-57 (64)
52 2y1n_A E3 ubiquitin-protein li 98.9 4E-10 1.4E-14 106.0 3.9 50 208-260 331-381 (389)
53 3knv_A TNF receptor-associated 98.9 2.3E-10 8E-15 93.5 1.6 48 207-257 29-77 (141)
54 1bor_A Transcription factor PM 98.9 3.1E-10 1.1E-14 78.1 1.7 47 207-259 4-50 (56)
55 2vje_B MDM4 protein; proto-onc 98.9 6.3E-10 2.2E-14 78.5 3.2 50 208-258 6-56 (63)
56 1jm7_B BARD1, BRCA1-associated 98.9 3.5E-10 1.2E-14 89.1 0.8 46 208-258 21-67 (117)
57 4ic3_A E3 ubiquitin-protein li 98.8 5.4E-10 1.8E-14 81.2 1.2 45 208-259 23-68 (74)
58 2c2l_A CHIP, carboxy terminus 98.8 3.4E-09 1.2E-13 94.1 4.3 49 207-258 206-255 (281)
59 3hcs_A TNF receptor-associated 98.7 3.7E-09 1.3E-13 88.3 3.2 50 207-259 16-66 (170)
60 2yu4_A E3 SUMO-protein ligase 98.7 4.9E-09 1.7E-13 79.6 3.0 46 207-255 5-59 (94)
61 2ecg_A Baculoviral IAP repeat- 98.7 1E-08 3.4E-13 74.5 4.4 45 208-259 24-69 (75)
62 3k1l_B Fancl; UBC, ring, RWD, 98.7 2.5E-09 8.5E-14 98.7 1.5 55 207-261 306-376 (381)
63 1vyx_A ORF K3, K3RING; zinc-bi 98.7 8.2E-09 2.8E-13 72.3 3.8 49 207-258 4-59 (60)
64 2ea5_A Cell growth regulator w 98.6 2.5E-08 8.4E-13 71.4 4.2 46 207-259 13-59 (68)
65 2f42_A STIP1 homology and U-bo 98.6 2E-08 6.9E-13 85.2 3.6 50 207-259 104-154 (179)
66 1wim_A KIAA0161 protein; ring 98.5 3.4E-08 1.2E-12 74.6 3.0 48 208-255 4-61 (94)
67 2yho_A E3 ubiquitin-protein li 98.5 1.6E-08 5.3E-13 74.5 0.9 45 208-259 17-62 (79)
68 3htk_C E3 SUMO-protein ligase 98.5 6.5E-08 2.2E-12 86.3 3.7 50 207-258 179-232 (267)
69 2bay_A PRE-mRNA splicing facto 98.4 7.7E-08 2.6E-12 67.4 2.0 48 210-260 4-52 (61)
70 3t6p_A Baculoviral IAP repeat- 98.4 5E-08 1.7E-12 90.7 1.2 46 207-259 293-339 (345)
71 3vk6_A E3 ubiquitin-protein li 97.9 6.3E-06 2.1E-10 62.9 3.7 49 211-261 3-52 (101)
72 3nw0_A Non-structural maintena 97.8 2.4E-05 8.1E-10 69.1 5.4 50 208-259 179-230 (238)
73 2ko5_A Ring finger protein Z; 95.9 0.0028 9.5E-08 47.6 1.6 55 207-266 26-81 (99)
74 2jun_A Midline-1; B-BOX, TRIM, 95.4 0.0065 2.2E-07 45.6 2.1 35 208-242 2-36 (101)
75 2lri_C Autoimmune regulator; Z 93.7 0.047 1.6E-06 38.3 3.1 46 208-256 11-60 (66)
76 1wil_A KIAA1045 protein; ring 90.6 0.12 4.2E-06 38.0 2.1 34 208-242 14-47 (89)
77 2l5u_A Chromodomain-helicase-D 88.7 0.22 7.4E-06 34.1 2.2 45 207-254 9-57 (61)
78 1fp0_A KAP-1 corepressor; PHD 88.5 0.25 8.4E-06 36.7 2.5 50 206-258 22-75 (88)
79 3o36_A Transcription intermedi 86.5 0.25 8.5E-06 41.1 1.7 46 208-256 3-52 (184)
80 3u5n_A E3 ubiquitin-protein li 86.1 0.14 4.7E-06 43.6 -0.1 47 207-256 5-55 (207)
81 1xwh_A Autoimmune regulator; P 85.0 0.23 7.7E-06 34.5 0.6 46 207-255 6-55 (66)
82 1mm2_A MI2-beta; PHD, zinc fin 84.4 0.21 7.3E-06 34.2 0.2 47 207-256 7-57 (61)
83 2yql_A PHD finger protein 21A; 84.2 0.14 4.6E-06 34.5 -0.8 45 207-254 7-55 (56)
84 3m62_A Ubiquitin conjugation f 83.8 0.59 2E-05 48.5 3.3 50 207-259 889-939 (968)
85 2puy_A PHD finger protein 21A; 83.4 0.12 4E-06 35.3 -1.5 47 208-257 4-54 (60)
86 1f62_A Transcription factor WS 82.9 0.4 1.4E-05 31.3 1.1 44 211-254 2-49 (51)
87 2k16_A Transcription initiatio 82.7 0.42 1.4E-05 33.8 1.2 52 207-258 16-71 (75)
88 2ysm_A Myeloid/lymphoid or mix 81.8 0.38 1.3E-05 36.6 0.8 47 207-253 5-55 (111)
89 1weu_A Inhibitor of growth fam 81.5 1.1 3.7E-05 33.3 3.1 46 207-256 34-86 (91)
90 2d8v_A Zinc finger FYVE domain 81.1 1 3.4E-05 31.5 2.6 32 207-242 6-38 (67)
91 2l43_A N-teminal domain from h 79.1 0.49 1.7E-05 34.8 0.6 53 207-259 23-79 (88)
92 2lv9_A Histone-lysine N-methyl 78.5 0.64 2.2E-05 34.9 1.0 47 207-254 26-75 (98)
93 2e6r_A Jumonji/ARID domain-con 77.1 0.49 1.7E-05 35.1 0.0 50 207-256 14-67 (92)
94 1wem_A Death associated transc 75.6 1.3 4.3E-05 31.4 1.9 49 208-257 15-72 (76)
95 3lqh_A Histone-lysine N-methyl 74.1 0.71 2.4E-05 38.7 0.2 52 210-261 3-69 (183)
96 1we9_A PHD finger family prote 74.0 0.95 3.3E-05 30.8 0.8 49 207-255 4-58 (64)
97 1weo_A Cellulose synthase, cat 73.0 12 0.00041 27.6 6.6 51 208-258 15-70 (93)
98 2lbm_A Transcriptional regulat 72.9 3.1 0.00011 33.3 3.8 46 206-254 60-116 (142)
99 2ro1_A Transcription intermedi 72.8 1.4 4.7E-05 36.9 1.7 44 210-256 3-50 (189)
100 2yt5_A Metal-response element- 72.8 0.57 1.9E-05 32.2 -0.6 51 208-258 5-64 (66)
101 3v43_A Histone acetyltransfera 71.3 4.4 0.00015 30.7 4.2 45 209-253 5-62 (112)
102 1wen_A Inhibitor of growth fam 69.7 2.6 8.8E-05 29.6 2.3 46 208-257 15-67 (71)
103 1wev_A Riken cDNA 1110020M19; 67.6 0.51 1.8E-05 34.7 -1.8 54 207-260 14-77 (88)
104 2cs3_A Protein C14ORF4, MY039 67.2 8.6 0.00029 27.9 4.6 38 208-246 14-53 (93)
105 3v43_A Histone acetyltransfera 64.8 1.6 5.6E-05 33.2 0.5 45 210-254 62-111 (112)
106 1y02_A CARP2, FYVE-ring finger 61.9 1.2 4.1E-05 34.8 -0.8 49 208-256 18-67 (120)
107 3i2d_A E3 SUMO-protein ligase 61.8 6.5 0.00022 36.4 4.0 47 209-257 249-299 (371)
108 1z2q_A LM5-1; membrane protein 61.4 6.1 0.00021 28.4 3.0 36 207-242 19-55 (84)
109 2yw8_A RUN and FYVE domain-con 60.4 5.9 0.0002 28.4 2.8 52 207-258 17-75 (82)
110 4gne_A Histone-lysine N-methyl 60.3 5.8 0.0002 30.2 2.8 48 206-258 12-65 (107)
111 1joc_A EEA1, early endosomal a 59.8 5.7 0.00019 30.9 2.8 34 208-241 68-102 (125)
112 4fo9_A E3 SUMO-protein ligase 59.3 7.8 0.00027 35.7 4.0 47 209-257 215-265 (360)
113 3t7l_A Zinc finger FYVE domain 58.9 6.4 0.00022 28.8 2.8 50 208-257 19-75 (90)
114 3shb_A E3 ubiquitin-protein li 58.9 1.4 4.8E-05 31.6 -0.8 44 211-254 28-76 (77)
115 1x4u_A Zinc finger, FYVE domai 58.8 6.8 0.00023 28.1 2.9 35 207-241 12-47 (84)
116 3ask_A E3 ubiquitin-protein li 57.7 2.9 0.0001 36.1 0.8 46 209-254 174-224 (226)
117 2kwj_A Zinc finger protein DPF 55.4 7.4 0.00025 29.6 2.8 33 210-242 2-41 (114)
118 2o35_A Hypothetical protein DU 55.3 4.6 0.00016 30.4 1.5 12 234-245 43-54 (105)
119 3fyb_A Protein of unknown func 55.2 4.7 0.00016 30.3 1.5 11 234-244 42-52 (104)
120 3ql9_A Transcriptional regulat 55.1 9.9 0.00034 29.9 3.5 45 207-254 55-110 (129)
121 1wep_A PHF8; structural genomi 54.9 10 0.00036 26.7 3.3 48 208-256 11-64 (79)
122 2e6s_A E3 ubiquitin-protein li 54.1 2.6 8.7E-05 30.2 -0.1 46 209-254 26-76 (77)
123 2ku3_A Bromodomain-containing 53.9 10 0.00034 26.5 3.0 48 207-254 14-65 (71)
124 2ri7_A Nucleosome-remodeling f 52.6 2.7 9.2E-05 34.2 -0.2 48 207-255 6-59 (174)
125 2kwj_A Zinc finger protein DPF 52.6 1.1 3.8E-05 34.4 -2.4 49 210-258 59-111 (114)
126 2vpb_A Hpygo1, pygopus homolog 51.5 9.6 0.00033 26.1 2.6 34 207-240 6-41 (65)
127 3asl_A E3 ubiquitin-protein li 51.4 2.7 9.1E-05 29.4 -0.4 44 211-254 20-68 (70)
128 2dar_A PDZ and LIM domain prot 50.7 8.4 0.00029 27.5 2.3 40 208-258 24-63 (90)
129 2xb1_A Pygopus homolog 2, B-ce 50.7 2.5 8.6E-05 32.0 -0.6 48 210-257 4-63 (105)
130 1wfk_A Zinc finger, FYVE domai 49.8 12 0.00041 27.2 3.0 52 208-259 8-67 (88)
131 1vfy_A Phosphatidylinositol-3- 48.9 12 0.00039 26.1 2.7 31 210-240 12-43 (73)
132 1dvp_A HRS, hepatocyte growth 48.5 8.4 0.00029 32.6 2.3 33 209-241 161-194 (220)
133 3zyq_A Hepatocyte growth facto 48.0 8.8 0.0003 32.8 2.3 50 209-258 164-222 (226)
134 1zbd_B Rabphilin-3A; G protein 47.1 8 0.00028 30.5 1.8 33 208-240 54-88 (134)
135 3mpx_A FYVE, rhogef and PH dom 47.0 4 0.00014 37.7 0.0 50 207-256 373-430 (434)
136 1z60_A TFIIH basal transcripti 47.0 7 0.00024 26.5 1.2 42 211-252 17-58 (59)
137 2vnf_A ING 4, P29ING4, inhibit 44.4 4.1 0.00014 27.5 -0.3 43 208-254 9-58 (60)
138 2jvx_A NF-kappa-B essential mo 42.5 6 0.00021 22.8 0.3 13 246-258 3-15 (28)
139 1iml_A CRIP, cysteine rich int 41.4 13 0.00046 25.4 2.0 42 208-253 26-68 (76)
140 2ysm_A Myeloid/lymphoid or mix 40.3 5.2 0.00018 30.1 -0.4 45 211-255 56-104 (111)
141 3c6w_A P28ING5, inhibitor of g 39.7 5.5 0.00019 26.8 -0.3 43 208-254 8-57 (59)
142 2kgg_A Histone demethylase jar 39.6 21 0.00071 23.0 2.7 43 211-253 4-52 (52)
143 2l9u_A Receptor tyrosine-prote 38.2 26 0.00091 21.2 2.6 6 47-52 18-23 (40)
144 1x62_A C-terminal LIM domain p 38.0 36 0.0012 23.3 3.9 38 209-257 15-52 (79)
145 2cu8_A Cysteine-rich protein 2 37.7 20 0.00068 24.4 2.5 41 209-259 9-49 (76)
146 3mjh_B Early endosome antigen 36.0 9.6 0.00033 22.9 0.5 9 210-218 6-14 (34)
147 2zet_C Melanophilin; complex, 35.6 23 0.00079 28.5 2.8 46 208-254 67-116 (153)
148 2pv0_B DNA (cytosine-5)-methyl 34.2 25 0.00084 32.7 3.1 45 207-254 91-147 (386)
149 2dj7_A Actin-binding LIM prote 33.3 41 0.0014 23.3 3.6 41 208-258 14-54 (80)
150 1zfo_A LAsp-1; LIM domain, zin 33.0 15 0.00052 21.1 1.0 26 211-238 5-30 (31)
151 1x64_A Alpha-actinin-2 associa 31.4 82 0.0028 21.9 5.1 41 208-259 24-64 (89)
152 3a1b_A DNA (cytosine-5)-methyl 31.0 27 0.00092 28.4 2.5 36 207-245 77-114 (159)
153 2rqw_B 24-meric peptide from s 30.2 16 0.00054 20.5 0.7 11 18-28 7-17 (26)
154 1x63_A Skeletal muscle LIM-pro 29.6 44 0.0015 22.8 3.2 42 209-259 15-56 (82)
155 2co8_A NEDD9 interacting prote 26.8 61 0.0021 22.4 3.6 43 208-260 14-56 (82)
156 1m3v_A FLIN4, fusion of the LI 26.8 45 0.0015 25.0 3.0 52 208-259 31-82 (122)
157 2d8z_A Four and A half LIM dom 26.5 54 0.0019 21.6 3.2 38 210-258 6-43 (70)
158 2gmg_A Hypothetical protein PF 26.1 9.9 0.00034 28.9 -0.9 25 227-256 70-94 (105)
159 1jdm_A Sarcolipin; helix, memb 25.1 57 0.0019 18.8 2.4 25 32-56 6-30 (31)
160 1wyh_A SLIM 2, skeletal muscle 24.8 53 0.0018 21.7 2.8 41 210-259 6-46 (72)
161 3f6q_B LIM and senescent cell 24.4 30 0.001 22.8 1.5 42 209-259 11-52 (72)
162 3o70_A PHD finger protein 13; 24.1 34 0.0012 23.4 1.7 47 207-254 17-66 (68)
163 1x4k_A Skeletal muscle LIM-pro 24.1 54 0.0018 21.7 2.8 41 210-259 6-46 (72)
164 2d8y_A Eplin protein; LIM doma 23.8 1.4E+02 0.0046 20.8 5.1 42 208-259 14-55 (91)
165 1wew_A DNA-binding family prot 23.7 66 0.0022 22.4 3.2 48 208-256 15-73 (78)
166 1nyp_A Pinch protein; LIM doma 23.7 53 0.0018 21.4 2.6 38 210-258 6-43 (66)
167 1wee_A PHD finger family prote 22.9 35 0.0012 23.4 1.6 49 207-256 14-67 (72)
168 1g47_A Pinch protein; LIM doma 22.2 72 0.0025 21.3 3.2 42 209-259 11-52 (77)
169 1a7i_A QCRP2 (LIM1); LIM domai 21.8 34 0.0012 23.5 1.4 40 210-259 8-47 (81)
170 1x4l_A Skeletal muscle LIM-pro 21.6 69 0.0024 21.2 2.9 40 210-258 6-47 (72)
171 2l3k_A Rhombotin-2, linker, LI 21.6 1.2E+02 0.0041 22.6 4.6 37 207-244 34-70 (123)
172 2cor_A Pinch protein; LIM doma 21.6 83 0.0028 21.5 3.4 40 209-259 15-54 (79)
173 2d8x_A Protein pinch; LIM doma 20.3 57 0.0019 21.5 2.2 39 210-259 6-44 (70)
No 1
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=99.68 E-value=4.8e-17 Score=123.50 Aligned_cols=78 Identities=31% Similarity=0.703 Sum_probs=65.9
Q ss_pred CCCCCCCHHHHhhCCCeeeeccCCCCCCCcccCCCCCChhHhhhhhhccccCCCCCCCcccccccccccccCCeeEEeCC
Q 024005 151 PTAASMSEEEINTLPVHKYKVSGSQSGASSMQLGSSSSPAEQKKLETSISVGNLKTEDELTCTVCLEQVNVGEIVRSLPC 230 (274)
Q Consensus 151 ~~~~~ls~e~I~~Lp~~~~~~~~~~~~~s~~~~~sss~~~~~~~~~~~~~~~~~~~~e~~~C~ICLe~~~~~~~v~~lpC 230 (274)
....+++++.|+.||..++..... ..+++..|+||++.+..++.+..+||
T Consensus 12 ~~~~~~s~~~i~~lp~~~~~~~~~------------------------------~~~~~~~C~IC~~~~~~~~~~~~l~C 61 (91)
T 2l0b_A 12 VANPPASKESIDALPEILVTEDHG------------------------------AVGQEMCCPICCSEYVKGDVATELPC 61 (91)
T ss_dssp SCCCCCCHHHHHTSCEEECCTTCS------------------------------SSSSCSEETTTTEECCTTCEEEEETT
T ss_pred cCCCCCCHHHHHhCCCeeeccccc------------------------------ccCCCCCCcccChhhcCCCcEEecCC
Confidence 455689999999999887754321 12356689999999999888999999
Q ss_pred CCccChhhHHHHHhcCCCCccccccccC
Q 024005 231 LHQFHANCIDPWLRQQGTCPVCKLRAGS 258 (274)
Q Consensus 231 gH~FH~~CI~~WL~~~~tCPlCR~~i~~ 258 (274)
+|.||..||.+|++.+.+||+||..+..
T Consensus 62 ~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~~ 89 (91)
T 2l0b_A 62 HHYFHKPCVSIWLQKSGTCPVCRCMFPP 89 (91)
T ss_dssp TEEEEHHHHHHHHTTTCBCTTTCCBSSC
T ss_pred CChHHHHHHHHHHHcCCcCcCcCccCCC
Confidence 9999999999999999999999998865
No 2
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.61 E-value=1.4e-16 Score=116.21 Aligned_cols=53 Identities=38% Similarity=1.050 Sum_probs=48.7
Q ss_pred CCcccccccccccccCCeeEEeCCCCccChhhHHHHHhcCCCCccccccccCC
Q 024005 207 EDELTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQQGTCPVCKLRAGSG 259 (274)
Q Consensus 207 ~e~~~C~ICLe~~~~~~~v~~lpCgH~FH~~CI~~WL~~~~tCPlCR~~i~~~ 259 (274)
+++..|+||++.+..++.+..+||+|.||..||.+|++.+.+||+||+.+...
T Consensus 21 ~~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~~~CP~Cr~~~~~~ 73 (75)
T 1x4j_A 21 SEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKANRTCPICRADSGPS 73 (75)
T ss_dssp SSCCEETTTTEECCBTCEEEEETTTEEEETTHHHHHHHHCSSCTTTCCCCCCC
T ss_pred CCCCCCeECCcccCCCCeEEEECCCCHhHHHHHHHHHHcCCcCcCcCCcCCCC
Confidence 35668999999999999999999999999999999999999999999988764
No 3
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=99.54 E-value=6.5e-15 Score=105.43 Aligned_cols=54 Identities=41% Similarity=0.992 Sum_probs=49.0
Q ss_pred CCcccccccccccccCCeeEEeCCCCccChhhHHHHHhcCCCCccccccccCCC
Q 024005 207 EDELTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQQGTCPVCKLRAGSGW 260 (274)
Q Consensus 207 ~e~~~C~ICLe~~~~~~~v~~lpCgH~FH~~CI~~WL~~~~tCPlCR~~i~~~~ 260 (274)
+++..|+||++.+..++.+..++|+|.||..||.+|++.+.+||+||..+....
T Consensus 12 ~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~ 65 (69)
T 2kiz_A 12 DTEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITNKKCPICRVDIEAQL 65 (69)
T ss_dssp TCCCSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHHHCSBCTTTCSBSCSCC
T ss_pred CCCCCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHHcCCCCcCcCccccCcC
Confidence 456789999999988888899999999999999999999999999999987654
No 4
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.52 E-value=1.2e-14 Score=105.36 Aligned_cols=55 Identities=29% Similarity=0.678 Sum_probs=49.5
Q ss_pred CCcccccccccccccCCeeEEeCCCCccChhhHHHHHhcCCCCccccccccCCCC
Q 024005 207 EDELTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQQGTCPVCKLRAGSGWH 261 (274)
Q Consensus 207 ~e~~~C~ICLe~~~~~~~v~~lpCgH~FH~~CI~~WL~~~~tCPlCR~~i~~~~~ 261 (274)
+++..|+||++.+..++.+..++|+|.||..||.+|++.+.+||+||+.+.....
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~~~~CP~Cr~~~~~~~~ 67 (74)
T 2ep4_A 13 NLHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVRKVCPLCNMPVLQLAQ 67 (74)
T ss_dssp CCSCBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHHCSBCTTTCCBCSSCCS
T ss_pred CCCCCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHHcCCcCCCcCcccccccc
Confidence 4567899999999988888899999999999999999999999999999876543
No 5
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.52 E-value=1.4e-14 Score=106.22 Aligned_cols=56 Identities=45% Similarity=0.945 Sum_probs=50.1
Q ss_pred CCcccccccccccccCCeeEEeCCCCccChhhHHHHHhcCCCCccccccccCCCCC
Q 024005 207 EDELTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQQGTCPVCKLRAGSGWHE 262 (274)
Q Consensus 207 ~e~~~C~ICLe~~~~~~~v~~lpCgH~FH~~CI~~WL~~~~tCPlCR~~i~~~~~~ 262 (274)
.+...|+||++.+..++.+..++|+|.||..||.+|++.+.+||+||..+......
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~ 68 (78)
T 2ect_A 13 GSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQHDSCPVCRKSLTGQNTA 68 (78)
T ss_dssp SSSCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHTTTCSCTTTCCCCCCSCSC
T ss_pred CCCCCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHHcCCcCcCcCCccCCcccC
Confidence 45679999999999888888999999999999999999999999999998765443
No 6
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=99.51 E-value=5.7e-15 Score=101.01 Aligned_cols=50 Identities=48% Similarity=1.077 Sum_probs=45.9
Q ss_pred CcccccccccccccCCeeEEeC-CCCccChhhHHHHHhcCCCCcccccccc
Q 024005 208 DELTCTVCLEQVNVGEIVRSLP-CLHQFHANCIDPWLRQQGTCPVCKLRAG 257 (274)
Q Consensus 208 e~~~C~ICLe~~~~~~~v~~lp-CgH~FH~~CI~~WL~~~~tCPlCR~~i~ 257 (274)
++..|+||++.+..++.+..++ |+|.||..||.+|++.+.+||+||+.+.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~~ 54 (55)
T 1iym_A 4 DGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTVV 54 (55)
T ss_dssp CSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTTCCSCSSSCCCSC
T ss_pred CCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHcCCcCcCCCCEeE
Confidence 5568999999999988888898 9999999999999999999999998764
No 7
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=99.48 E-value=2.5e-14 Score=112.24 Aligned_cols=62 Identities=27% Similarity=0.520 Sum_probs=49.4
Q ss_pred CcccccccccccccCC---------------eeEEeCCCCccChhhHHHHH-----hcCCCCccccccccCCCCCCCCcc
Q 024005 208 DELTCTVCLEQVNVGE---------------IVRSLPCLHQFHANCIDPWL-----RQQGTCPVCKLRAGSGWHETRQVE 267 (274)
Q Consensus 208 e~~~C~ICLe~~~~~~---------------~v~~lpCgH~FH~~CI~~WL-----~~~~tCPlCR~~i~~~~~~~~~~~ 267 (274)
.+..|+||++.|..+. .+..++|+|.||..||.+|+ +.+.+||+||..+..+..+...+.
T Consensus 24 ~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~~~g~qp~g~ 103 (114)
T 1v87_A 24 PEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGEKTGTQPWGK 103 (114)
T ss_dssp CSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSSCSSSCTTSS
T ss_pred CCCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCccCCCCCCCCCCe
Confidence 4468999999996543 34478899999999999999 456799999999988776666555
Q ss_pred cc
Q 024005 268 MD 269 (274)
Q Consensus 268 ~~ 269 (274)
+.
T Consensus 104 m~ 105 (114)
T 1v87_A 104 ME 105 (114)
T ss_dssp CC
T ss_pred EE
Confidence 44
No 8
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.42 E-value=7.3e-14 Score=103.69 Aligned_cols=51 Identities=31% Similarity=0.686 Sum_probs=41.5
Q ss_pred Cccccccccccccc-----------CCeeEEeC-CCCccChhhHHHHHhcCCCCccccccccC
Q 024005 208 DELTCTVCLEQVNV-----------GEIVRSLP-CLHQFHANCIDPWLRQQGTCPVCKLRAGS 258 (274)
Q Consensus 208 e~~~C~ICLe~~~~-----------~~~v~~lp-CgH~FH~~CI~~WL~~~~tCPlCR~~i~~ 258 (274)
++..|+||++.+.. ++.+..++ |+|.||..||.+||+++.+||+||+++..
T Consensus 14 ~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~~ 76 (81)
T 2ecl_A 14 ECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQQDWVV 76 (81)
T ss_dssp CCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTCCBCTTTCCBCCE
T ss_pred CCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhCCCCCCcCCCcch
Confidence 45578888887753 44456665 99999999999999999999999998754
No 9
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=99.42 E-value=9.4e-14 Score=94.77 Aligned_cols=50 Identities=28% Similarity=0.749 Sum_probs=43.6
Q ss_pred CcccccccccccccC-CeeEEeCCCCccChhhHHHHHhcCCCCcccccccc
Q 024005 208 DELTCTVCLEQVNVG-EIVRSLPCLHQFHANCIDPWLRQQGTCPVCKLRAG 257 (274)
Q Consensus 208 e~~~C~ICLe~~~~~-~~v~~lpCgH~FH~~CI~~WL~~~~tCPlCR~~i~ 257 (274)
++..|+||++.+..+ +.+..++|+|.||..||.+|++.+.+||+||+.+.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 54 (55)
T 2ecm_A 4 GSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYRCPLCSGPSS 54 (55)
T ss_dssp CCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHHTCCCTTSCCSSC
T ss_pred CCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHcCCcCCCCCCcCC
Confidence 456899999999653 45778899999999999999999999999998774
No 10
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=99.41 E-value=1.6e-13 Score=97.73 Aligned_cols=53 Identities=42% Similarity=0.856 Sum_probs=45.1
Q ss_pred CcccccccccccccCCeeEEeCCCCccChhhHHHHHhcCCCCccccccccCCCCC
Q 024005 208 DELTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQQGTCPVCKLRAGSGWHE 262 (274)
Q Consensus 208 e~~~C~ICLe~~~~~~~v~~lpCgH~FH~~CI~~WL~~~~tCPlCR~~i~~~~~~ 262 (274)
++..|+||++.+.. ....++|||.||..||.+|++.+.+||+||..+......
T Consensus 4 ~~~~C~IC~~~~~~--~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~ 56 (68)
T 1chc_A 4 VAERCPICLEDPSN--YSMALPCLHAFCYVCITRWIRQNPTCPLCKVPVESVVHT 56 (68)
T ss_dssp CCCCCSSCCSCCCS--CEEETTTTEEESTTHHHHHHHHSCSTTTTCCCCCCEECC
T ss_pred CCCCCeeCCccccC--CcEecCCCCeeHHHHHHHHHhCcCcCcCCChhhHhhhhc
Confidence 45689999999874 357889999999999999999999999999998754333
No 11
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.41 E-value=1.1e-13 Score=98.52 Aligned_cols=52 Identities=23% Similarity=0.672 Sum_probs=45.2
Q ss_pred CCcccccccccccccC----CeeEEeCCCCccChhhHHHHHhcCCCCccccccccC
Q 024005 207 EDELTCTVCLEQVNVG----EIVRSLPCLHQFHANCIDPWLRQQGTCPVCKLRAGS 258 (274)
Q Consensus 207 ~e~~~C~ICLe~~~~~----~~v~~lpCgH~FH~~CI~~WL~~~~tCPlCR~~i~~ 258 (274)
.+...|+||++.+..+ +.+..++|||.||..||.+|++.+.+||+||..+..
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 68 (69)
T 2ea6_A 13 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINH 68 (69)
T ss_dssp TCCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHHCSSCTTTCCCCCC
T ss_pred CCCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHcCCCCCCCCCccCc
Confidence 4667899999998753 345788999999999999999999999999998864
No 12
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=99.40 E-value=1e-13 Score=99.43 Aligned_cols=54 Identities=22% Similarity=0.631 Sum_probs=46.6
Q ss_pred CCcccccccccccccC----CeeEEeCCCCccChhhHHHHHhcCCCCccccccccCCC
Q 024005 207 EDELTCTVCLEQVNVG----EIVRSLPCLHQFHANCIDPWLRQQGTCPVCKLRAGSGW 260 (274)
Q Consensus 207 ~e~~~C~ICLe~~~~~----~~v~~lpCgH~FH~~CI~~WL~~~~tCPlCR~~i~~~~ 260 (274)
+++..|+||++.+..+ +....++|||.||..||.+|++.+.+||+||..+..+.
T Consensus 8 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~ 65 (71)
T 3ng2_A 8 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKR 65 (71)
T ss_dssp TTCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHHCSBCTTTCCBCCCCS
T ss_pred CCCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHcCCCCCCCCCccChhh
Confidence 4667899999998753 55678899999999999999999999999999987543
No 13
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=99.36 E-value=2.6e-13 Score=95.08 Aligned_cols=52 Identities=23% Similarity=0.649 Sum_probs=45.0
Q ss_pred CcccccccccccccC----CeeEEeCCCCccChhhHHHHHhcCCCCccccccccCC
Q 024005 208 DELTCTVCLEQVNVG----EIVRSLPCLHQFHANCIDPWLRQQGTCPVCKLRAGSG 259 (274)
Q Consensus 208 e~~~C~ICLe~~~~~----~~v~~lpCgH~FH~~CI~~WL~~~~tCPlCR~~i~~~ 259 (274)
++..|+||++.+..+ +.+..++|||.||..||.+|++.+.+||+||..+...
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 57 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHK 57 (64)
T ss_dssp CCCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHHCSBCTTTCCBCTTT
T ss_pred CCCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHcCCCCCCCCccCCcc
Confidence 356899999998753 4557889999999999999999999999999998764
No 14
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=99.35 E-value=5.1e-13 Score=104.39 Aligned_cols=51 Identities=25% Similarity=0.484 Sum_probs=43.3
Q ss_pred CCcccccccccccccC---------------CeeEEeCCCCccChhhHHHHHhcCCCCcccccccc
Q 024005 207 EDELTCTVCLEQVNVG---------------EIVRSLPCLHQFHANCIDPWLRQQGTCPVCKLRAG 257 (274)
Q Consensus 207 ~e~~~C~ICLe~~~~~---------------~~v~~lpCgH~FH~~CI~~WL~~~~tCPlCR~~i~ 257 (274)
.+++.|+||++.|... ..+..++|+|.||..||.+||+.+.+||+||+.+.
T Consensus 35 ~~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~~~ 100 (106)
T 3dpl_R 35 IVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWE 100 (106)
T ss_dssp SCSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTTCSBCSSSCSBCC
T ss_pred CCCCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHcCCcCcCCCCcce
Confidence 3567899999998754 13677899999999999999999999999999753
No 15
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.34 E-value=1.2e-12 Score=94.51 Aligned_cols=52 Identities=21% Similarity=0.494 Sum_probs=44.4
Q ss_pred CCcccccccccccccCCeeEEeCCCCccChhhHHHHHhcCCCCccccccccCCC
Q 024005 207 EDELTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQQGTCPVCKLRAGSGW 260 (274)
Q Consensus 207 ~e~~~C~ICLe~~~~~~~v~~lpCgH~FH~~CI~~WL~~~~tCPlCR~~i~~~~ 260 (274)
++...|+||++.+..+ +..++|||.||..||.+|++.+.+||+||+.+....
T Consensus 13 ~~~~~C~IC~~~~~~p--~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~ 64 (72)
T 2djb_A 13 TPYILCSICKGYLIDA--TTITECLHTFCKSCIVRHFYYSNRCPKCNIVVHQTQ 64 (72)
T ss_dssp CGGGSCTTTSSCCSSC--EECSSSCCEECHHHHHHHHHHCSSCTTTCCCCCSSC
T ss_pred CCCCCCCCCChHHHCc--CEECCCCCHHHHHHHHHHHHcCCcCCCcCcccCccc
Confidence 5677999999999864 333489999999999999999999999999987643
No 16
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.34 E-value=3.6e-13 Score=97.02 Aligned_cols=50 Identities=24% Similarity=0.484 Sum_probs=44.2
Q ss_pred CCcccccccccccccCCeeEEeCCCCccChhhHHHHHhcCCCCccccccccCC
Q 024005 207 EDELTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQQGTCPVCKLRAGSG 259 (274)
Q Consensus 207 ~e~~~C~ICLe~~~~~~~v~~lpCgH~FH~~CI~~WL~~~~tCPlCR~~i~~~ 259 (274)
.++..|+||++.+... ..++|+|.||..||.+|++.+.+||+||..+...
T Consensus 13 ~~~~~C~IC~~~~~~~---~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~ 62 (71)
T 2d8t_A 13 LTVPECAICLQTCVHP---VSLPCKHVFCYLCVKGASWLGKRCALCRQEIPED 62 (71)
T ss_dssp SSCCBCSSSSSBCSSE---EEETTTEEEEHHHHHHCTTCSSBCSSSCCBCCHH
T ss_pred CCCCCCccCCcccCCC---EEccCCCHHHHHHHHHHHHCCCcCcCcCchhCHh
Confidence 4667899999998765 6789999999999999999999999999988653
No 17
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.32 E-value=5.6e-13 Score=95.52 Aligned_cols=50 Identities=34% Similarity=0.877 Sum_probs=44.4
Q ss_pred CCcccccccccccccCCeeEEeCCCCccChhhHHHHHhcCCCCccccccccCCC
Q 024005 207 EDELTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQQGTCPVCKLRAGSGW 260 (274)
Q Consensus 207 ~e~~~C~ICLe~~~~~~~v~~lpCgH~FH~~CI~~WL~~~~tCPlCR~~i~~~~ 260 (274)
.+...|+||++.+.. ..++|+|.||..||.+|++++.+||+||+.+....
T Consensus 13 ~~~~~C~IC~~~~~~----~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~ 62 (70)
T 2ecn_A 13 TDEEECCICMDGRAD----LILPCAHSFCQKCIDKWSDRHRNCPICRLQMTGAN 62 (70)
T ss_dssp CCCCCCSSSCCSCCS----EEETTTEEECHHHHHHSSCCCSSCHHHHHCTTCCC
T ss_pred CCCCCCeeCCcCccC----cccCCCCcccHHHHHHHHHCcCcCCCcCCcccCCC
Confidence 456789999999875 67899999999999999999999999999987643
No 18
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.30 E-value=1.6e-12 Score=95.92 Aligned_cols=48 Identities=23% Similarity=0.521 Sum_probs=43.2
Q ss_pred CCcccccccccccccCCeeEEeCCCCccChhhHHHHHhcCCCCcccccccc
Q 024005 207 EDELTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQQGTCPVCKLRAG 257 (274)
Q Consensus 207 ~e~~~C~ICLe~~~~~~~v~~lpCgH~FH~~CI~~WL~~~~tCPlCR~~i~ 257 (274)
++...|+||++.+..+ ..++|||.||..||.+|++...+||+||..+.
T Consensus 13 ~~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 60 (81)
T 2csy_A 13 EIPFRCFICRQAFQNP---VVTKCRHYFCESCALEHFRATPRCYICDQPTG 60 (81)
T ss_dssp CCCSBCSSSCSBCCSE---EECTTSCEEEHHHHHHHHHHCSBCSSSCCBCC
T ss_pred CCCCCCcCCCchhcCe---eEccCCCHhHHHHHHHHHHCCCcCCCcCcccc
Confidence 4567899999999764 56899999999999999999999999999986
No 19
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.29 E-value=2.1e-12 Score=95.92 Aligned_cols=53 Identities=21% Similarity=0.549 Sum_probs=44.4
Q ss_pred CCcccccccccccccCCeeEEeCCC-----CccChhhHHHHHhcC--CCCccccccccCCC
Q 024005 207 EDELTCTVCLEQVNVGEIVRSLPCL-----HQFHANCIDPWLRQQ--GTCPVCKLRAGSGW 260 (274)
Q Consensus 207 ~e~~~C~ICLe~~~~~~~v~~lpCg-----H~FH~~CI~~WL~~~--~tCPlCR~~i~~~~ 260 (274)
.++..|.||++++..++.+ .+||. |.||..||++||..+ .+||+||+.+....
T Consensus 13 ~~~~~C~IC~~~~~~~~~l-~~pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~~~ 72 (80)
T 2d8s_A 13 SSQDICRICHCEGDDESPL-ITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIMET 72 (80)
T ss_dssp TTSCCCSSSCCCCCSSSCE-ECSSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCCCCC
T ss_pred CCCCCCeEcCccccCCCee-EeccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeeecCc
Confidence 4566899999999877765 68996 999999999999876 48999999886543
No 20
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=99.28 E-value=7.9e-13 Score=107.48 Aligned_cols=49 Identities=33% Similarity=0.843 Sum_probs=43.7
Q ss_pred CcccccccccccccCCeeEEeCCCCccChhhHHHHHhcCCCCccccccccCC
Q 024005 208 DELTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQQGTCPVCKLRAGSG 259 (274)
Q Consensus 208 e~~~C~ICLe~~~~~~~v~~lpCgH~FH~~CI~~WL~~~~tCPlCR~~i~~~ 259 (274)
++..|+||++.+..+ ..+||||.||..||..|+..+.+||+||.++...
T Consensus 52 ~~~~C~iC~~~~~~~---~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 100 (138)
T 4ayc_A 52 NELQCIICSEYFIEA---VTLNCAHSFCSYCINEWMKRKIECPICRKDIKSK 100 (138)
T ss_dssp HHSBCTTTCSBCSSE---EEETTSCEEEHHHHHHHTTTCSBCTTTCCBCCCE
T ss_pred ccCCCcccCcccCCc---eECCCCCCccHHHHHHHHHcCCcCCCCCCcCCCC
Confidence 456899999999865 6789999999999999999999999999998654
No 21
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=99.28 E-value=3e-12 Score=93.03 Aligned_cols=49 Identities=31% Similarity=0.674 Sum_probs=42.5
Q ss_pred CCcccccccccccccCCeeEEeC-CCCccChhhHHHHHhcC--CCCccccccccC
Q 024005 207 EDELTCTVCLEQVNVGEIVRSLP-CLHQFHANCIDPWLRQQ--GTCPVCKLRAGS 258 (274)
Q Consensus 207 ~e~~~C~ICLe~~~~~~~v~~lp-CgH~FH~~CI~~WL~~~--~tCPlCR~~i~~ 258 (274)
.++..|+||++.+..+ ..++ |||.||..||.+|++.+ .+||+||+.+..
T Consensus 13 ~~~~~C~IC~~~~~~p---~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~ 64 (74)
T 2yur_A 13 PDELLCLICKDIMTDA---VVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVS 64 (74)
T ss_dssp CGGGSCSSSCCCCTTC---EECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSCC
T ss_pred CCCCCCcCCChHHhCC---eEcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCCC
Confidence 5678999999999866 6799 99999999999999876 689999997543
No 22
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.27 E-value=2.7e-12 Score=91.04 Aligned_cols=50 Identities=22% Similarity=0.521 Sum_probs=42.9
Q ss_pred CCcccccccccccccCCeeEEeCCCCccChhhHHHHHh-cCCCCccccccccCC
Q 024005 207 EDELTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLR-QQGTCPVCKLRAGSG 259 (274)
Q Consensus 207 ~e~~~C~ICLe~~~~~~~v~~lpCgH~FH~~CI~~WL~-~~~tCPlCR~~i~~~ 259 (274)
.+...|+||++.+..+ ..++|||.||..||.+|++ .+.+||+||..+..+
T Consensus 13 ~~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 63 (66)
T 2ecy_A 13 EDKYKCEKCHLVLCSP---KQTECGHRFCESCMAALLSSSSPKCTACQESIVKD 63 (66)
T ss_dssp CCCEECTTTCCEESSC---CCCSSSCCCCHHHHHHHHTTSSCCCTTTCCCCCTT
T ss_pred CcCCCCCCCChHhcCe---eECCCCCHHHHHHHHHHHHhCcCCCCCCCcCCChh
Confidence 4678999999999866 4489999999999999994 567899999988764
No 23
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.27 E-value=3.8e-12 Score=94.76 Aligned_cols=53 Identities=23% Similarity=0.591 Sum_probs=45.4
Q ss_pred CCcccccccccccccCCe-eEEeCCCCccChhhHHHHHhcC---CCCccccccccCC
Q 024005 207 EDELTCTVCLEQVNVGEI-VRSLPCLHQFHANCIDPWLRQQ---GTCPVCKLRAGSG 259 (274)
Q Consensus 207 ~e~~~C~ICLe~~~~~~~-v~~lpCgH~FH~~CI~~WL~~~---~tCPlCR~~i~~~ 259 (274)
++...|+||++.+...+. ...++|||.||..||.+|++.+ .+||+||+.+...
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~ 69 (88)
T 2ct2_A 13 REVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKITRIT 69 (88)
T ss_dssp CSCCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCCS
T ss_pred cCCCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcCCCCcCCCCCCCcccch
Confidence 567789999999987553 5778999999999999999876 7899999987654
No 24
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.25 E-value=3.6e-12 Score=91.80 Aligned_cols=50 Identities=26% Similarity=0.631 Sum_probs=42.7
Q ss_pred CCcccccccccccccCCeeEEeCCCCccChhhHHHHHh---cCCCCccccccccCC
Q 024005 207 EDELTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLR---QQGTCPVCKLRAGSG 259 (274)
Q Consensus 207 ~e~~~C~ICLe~~~~~~~v~~lpCgH~FH~~CI~~WL~---~~~tCPlCR~~i~~~ 259 (274)
++...|+||++.+..+ ..++|||.||..||.+|++ .+..||+||+.+...
T Consensus 18 ~~~~~C~IC~~~~~~~---~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~ 70 (73)
T 2ysl_A 18 QEEVICPICLDILQKP---VTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSVRKN 70 (73)
T ss_dssp CCCCBCTTTCSBCSSE---EECTTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCCC
T ss_pred ccCCEeccCCcccCCe---EEcCCCChhhHHHHHHHHHcCCCCCCCCCCCCcCCcc
Confidence 5677999999998854 6679999999999999997 456899999988654
No 25
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=99.24 E-value=4.6e-12 Score=92.55 Aligned_cols=50 Identities=18% Similarity=0.374 Sum_probs=43.9
Q ss_pred CCcccccccccccccCCeeEEeCCCCccChhhHHHHHhc-CCCCccccccccCC
Q 024005 207 EDELTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQ-QGTCPVCKLRAGSG 259 (274)
Q Consensus 207 ~e~~~C~ICLe~~~~~~~v~~lpCgH~FH~~CI~~WL~~-~~tCPlCR~~i~~~ 259 (274)
.++..|+||++.+..+ ..++|||.||..||.+|++. +.+||+||..+...
T Consensus 6 ~~~~~C~IC~~~~~~P---v~~~CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~~~ 56 (78)
T 1t1h_A 6 PEYFRCPISLELMKDP---VIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLHA 56 (78)
T ss_dssp SSSSSCTTTSCCCSSE---EEETTTEEEEHHHHHHHHTTTCCBCTTTCCBCSSC
T ss_pred cccCCCCCccccccCC---EEcCCCCeecHHHHHHHHHHCcCCCCCCcCCCChh
Confidence 4677999999999865 66899999999999999987 78999999988654
No 26
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=99.22 E-value=1.1e-12 Score=104.18 Aligned_cols=51 Identities=27% Similarity=0.527 Sum_probs=1.5
Q ss_pred CCcccccccccccccC-------------C--eeEEeCCCCccChhhHHHHHhcCCCCcccccccc
Q 024005 207 EDELTCTVCLEQVNVG-------------E--IVRSLPCLHQFHANCIDPWLRQQGTCPVCKLRAG 257 (274)
Q Consensus 207 ~e~~~C~ICLe~~~~~-------------~--~v~~lpCgH~FH~~CI~~WL~~~~tCPlCR~~i~ 257 (274)
.+++.|+||++.|... + .+..++|+|.||..||.+||+.+.+||+||+++.
T Consensus 46 ~~~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~~~~CP~Cr~~~~ 111 (117)
T 4a0k_B 46 IVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWE 111 (117)
T ss_dssp CCC---------------------------------------------------------------
T ss_pred CCCCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHcCCcCCCCCCeee
Confidence 3567899999999752 1 2333589999999999999999999999999754
No 27
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=99.20 E-value=3.6e-12 Score=98.08 Aligned_cols=50 Identities=24% Similarity=0.624 Sum_probs=42.7
Q ss_pred CCcccccccccccccCCeeEEeCCCCccChhhHHHHHhcC-CCCccccccccC
Q 024005 207 EDELTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQQ-GTCPVCKLRAGS 258 (274)
Q Consensus 207 ~e~~~C~ICLe~~~~~~~v~~lpCgH~FH~~CI~~WL~~~-~tCPlCR~~i~~ 258 (274)
+++..|+||++.+..+ +..++|||.||..||.+|++.+ .+||+||..+..
T Consensus 20 ~~~~~C~IC~~~~~~p--~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~ 70 (100)
T 3lrq_A 20 AEVFRCFICMEKLRDA--RLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQL 70 (100)
T ss_dssp HHHTBCTTTCSBCSSE--EECTTTCCEEEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred CCCCCCccCCccccCc--cccCCCCChhhHHHHHHHHHHCcCCCCCCCCcCCH
Confidence 3567899999999854 3338999999999999999988 699999998854
No 28
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.20 E-value=1.6e-11 Score=90.44 Aligned_cols=50 Identities=36% Similarity=0.782 Sum_probs=43.8
Q ss_pred CCcccccccccccccCCeeEEeCCCCccChhhHHHHHhc------CCCCccccccccCC
Q 024005 207 EDELTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQ------QGTCPVCKLRAGSG 259 (274)
Q Consensus 207 ~e~~~C~ICLe~~~~~~~v~~lpCgH~FH~~CI~~WL~~------~~tCPlCR~~i~~~ 259 (274)
+++..|+||++.+..+ ..++|+|.||..||..|++. ...||+||..+...
T Consensus 17 ~~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~ 72 (85)
T 2ecw_A 17 KEEVTCPICLELLKEP---VSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPFG 72 (85)
T ss_dssp CTTTSCTTTCSCCSSC---EECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCTT
T ss_pred ccCCCCcCCChhhCcc---eeCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCHH
Confidence 4667999999999866 57899999999999999987 66899999998754
No 29
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.18 E-value=2.1e-11 Score=85.47 Aligned_cols=43 Identities=28% Similarity=0.723 Sum_probs=37.8
Q ss_pred CCcccccccccccccCCeeEEeCCCCccChhhHHHHHh---cCCCCccc
Q 024005 207 EDELTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLR---QQGTCPVC 252 (274)
Q Consensus 207 ~e~~~C~ICLe~~~~~~~v~~lpCgH~FH~~CI~~WL~---~~~tCPlC 252 (274)
+++..|+||++.+..+ ..++|||.||..||.+|++ .+.+||+|
T Consensus 18 ~~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 18 QEEVICPICLDILQKP---VTIDCGHNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCCBCTTTCSBCSSC---EECTTSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred ccCCCCCcCCchhCCe---EEeCCCCcchHHHHHHHHHcCCCCCcCcCC
Confidence 5678999999999866 6779999999999999998 45689998
No 30
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.18 E-value=1e-11 Score=98.76 Aligned_cols=54 Identities=22% Similarity=0.616 Sum_probs=46.7
Q ss_pred CcccccccccccccC----CeeEEeCCCCccChhhHHHHHhcCCCCccccccccCCCC
Q 024005 208 DELTCTVCLEQVNVG----EIVRSLPCLHQFHANCIDPWLRQQGTCPVCKLRAGSGWH 261 (274)
Q Consensus 208 e~~~C~ICLe~~~~~----~~v~~lpCgH~FH~~CI~~WL~~~~tCPlCR~~i~~~~~ 261 (274)
++..|+||++.+..+ +....++|||.||..||.+|++.+.+||+||+.+.....
T Consensus 6 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~l 63 (133)
T 4ap4_A 6 GTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKRY 63 (133)
T ss_dssp CSCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTTCSBCTTTCCBCTTTCE
T ss_pred CCCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHhCCCCCCCCCcCccccc
Confidence 567899999999754 455789999999999999999999999999999876544
No 31
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.17 E-value=2.8e-11 Score=89.02 Aligned_cols=50 Identities=32% Similarity=0.784 Sum_probs=43.7
Q ss_pred CCcccccccccccccCCeeEEeCCCCccChhhHHHHHhc------CCCCccccccccCC
Q 024005 207 EDELTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQ------QGTCPVCKLRAGSG 259 (274)
Q Consensus 207 ~e~~~C~ICLe~~~~~~~v~~lpCgH~FH~~CI~~WL~~------~~tCPlCR~~i~~~ 259 (274)
.+...|+||++.+..+ ..++|||.||..||..|++. ...||+||..+...
T Consensus 17 ~~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~ 72 (85)
T 2ecv_A 17 KEEVTCPICLELLTQP---LSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQPE 72 (85)
T ss_dssp CCCCCCTTTCSCCSSC---BCCSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCSS
T ss_pred cCCCCCCCCCcccCCc---eeCCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCHH
Confidence 4677999999999865 56799999999999999987 77999999998754
No 32
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=99.17 E-value=7.9e-12 Score=95.58 Aligned_cols=49 Identities=29% Similarity=0.710 Sum_probs=42.3
Q ss_pred CcccccccccccccCCeeEEeCCCCccChhhHHHHHhcCCCCccccccccC
Q 024005 208 DELTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQQGTCPVCKLRAGS 258 (274)
Q Consensus 208 e~~~C~ICLe~~~~~~~v~~lpCgH~FH~~CI~~WL~~~~tCPlCR~~i~~ 258 (274)
+...|+||++.+..+ +..++|||.||..||.+|++.+.+||+||..+..
T Consensus 21 ~~~~C~IC~~~~~~p--~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 69 (99)
T 2y43_A 21 DLLRCGICFEYFNIA--MIIPQCSHNYCSLCIRKFLSYKTQCPTCCVTVTE 69 (99)
T ss_dssp HHTBCTTTCSBCSSE--EECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCCG
T ss_pred CCCCcccCChhhCCc--CEECCCCCHhhHHHHHHHHHCCCCCCCCCCcCCh
Confidence 567899999999854 3334899999999999999999999999998875
No 33
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=99.16 E-value=5.3e-12 Score=92.16 Aligned_cols=50 Identities=32% Similarity=0.700 Sum_probs=43.4
Q ss_pred CCcccccccccccccCCeeEEeCCCCccChhhHHHHHhc-------CCCCccccccccCC
Q 024005 207 EDELTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQ-------QGTCPVCKLRAGSG 259 (274)
Q Consensus 207 ~e~~~C~ICLe~~~~~~~v~~lpCgH~FH~~CI~~WL~~-------~~tCPlCR~~i~~~ 259 (274)
+++..|+||++.+..+ ..++|||.||..||.+|++. ...||+||..+...
T Consensus 10 ~~~~~C~IC~~~~~~p---~~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~~ 66 (79)
T 2egp_A 10 QEEVTCPICLELLTEP---LSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSFE 66 (79)
T ss_dssp CCCCEETTTTEECSSC---CCCSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCSS
T ss_pred ccCCCCcCCCcccCCe---eECCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCHh
Confidence 4677999999999865 56899999999999999987 56899999998753
No 34
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=99.16 E-value=1.5e-11 Score=95.60 Aligned_cols=51 Identities=25% Similarity=0.636 Sum_probs=43.7
Q ss_pred CCcccccccccccccCCeeEEeCCCCccChhhHHHHHhcCCCCccccccccCC
Q 024005 207 EDELTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQQGTCPVCKLRAGSG 259 (274)
Q Consensus 207 ~e~~~C~ICLe~~~~~~~v~~lpCgH~FH~~CI~~WL~~~~tCPlCR~~i~~~ 259 (274)
+++..|+||++.+..+ +..++|||.||..||..|++.+.+||+||..+...
T Consensus 13 ~~~~~C~IC~~~~~~p--~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~ 63 (108)
T 2ckl_A 13 NPHLMCVLCGGYFIDA--TTIIECLHSFCKTCIVRYLETSKYCPICDVQVHKT 63 (108)
T ss_dssp GGGTBCTTTSSBCSSE--EEETTTCCEEEHHHHHHHHTSCSBCTTTCCBSCSS
T ss_pred CCcCCCccCChHHhCc--CEeCCCCChhhHHHHHHHHHhCCcCcCCCcccccc
Confidence 4577999999999854 44449999999999999999999999999988764
No 35
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=99.15 E-value=3.2e-11 Score=90.74 Aligned_cols=48 Identities=29% Similarity=0.672 Sum_probs=41.9
Q ss_pred CCcccccccccccccCCeeEEeC-CCCccChhhHHHHHhcC--CCCcccccccc
Q 024005 207 EDELTCTVCLEQVNVGEIVRSLP-CLHQFHANCIDPWLRQQ--GTCPVCKLRAG 257 (274)
Q Consensus 207 ~e~~~C~ICLe~~~~~~~v~~lp-CgH~FH~~CI~~WL~~~--~tCPlCR~~i~ 257 (274)
.++..|+||++.+..+ ..++ |||.||..||.+|+..+ ..||+||..+.
T Consensus 11 ~~~~~C~IC~~~~~~p---~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~ 61 (92)
T 3ztg_A 11 PDELLCLICKDIMTDA---VVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDV 61 (92)
T ss_dssp CTTTEETTTTEECSSC---EECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSSC
T ss_pred CcCCCCCCCChhhcCc---eECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcCC
Confidence 5678999999999866 7889 99999999999999754 58999999873
No 36
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=99.15 E-value=1.2e-11 Score=98.43 Aligned_cols=48 Identities=29% Similarity=0.679 Sum_probs=42.2
Q ss_pred CcccccccccccccCCeeEEeCCCCccChhhHHHHHhcCC-CCccccccccC
Q 024005 208 DELTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQQG-TCPVCKLRAGS 258 (274)
Q Consensus 208 e~~~C~ICLe~~~~~~~v~~lpCgH~FH~~CI~~WL~~~~-tCPlCR~~i~~ 258 (274)
+...|+||++.+..+ ..++|||.||..||..|+..+. +||+||..+..
T Consensus 51 ~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 99 (124)
T 3fl2_A 51 ETFQCICCQELVFRP---ITTVCQHNVCKDCLDRSFRAQVFSCPACRYDLGR 99 (124)
T ss_dssp HHTBCTTTSSBCSSE---EECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCT
T ss_pred cCCCCCcCChHHcCc---EEeeCCCcccHHHHHHHHhHCcCCCCCCCccCCC
Confidence 567899999999865 6789999999999999998655 89999999876
No 37
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.13 E-value=2.9e-11 Score=85.37 Aligned_cols=52 Identities=21% Similarity=0.519 Sum_probs=41.5
Q ss_pred Cccccccccc-ccccCCe-eEEeCCCCccChhhHHHHHhc-CCCCccccccccCC
Q 024005 208 DELTCTVCLE-QVNVGEI-VRSLPCLHQFHANCIDPWLRQ-QGTCPVCKLRAGSG 259 (274)
Q Consensus 208 e~~~C~ICLe-~~~~~~~-v~~lpCgH~FH~~CI~~WL~~-~~tCPlCR~~i~~~ 259 (274)
++..|+||++ .+..+.. ...++|||.||..||.+|+.+ +..||+||..+..+
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 56 (65)
T 1g25_A 2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRKS 56 (65)
T ss_dssp CTTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCSSC
T ss_pred CCCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHcCCCcCCCCCCccccc
Confidence 3568999999 7766543 245789999999999999765 46799999998754
No 38
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.13 E-value=2.6e-11 Score=83.26 Aligned_cols=43 Identities=37% Similarity=0.873 Sum_probs=37.0
Q ss_pred CCcccccccccccccCCeeEEeCCCCccChhhHHHHHh---cCCCCccc
Q 024005 207 EDELTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLR---QQGTCPVC 252 (274)
Q Consensus 207 ~e~~~C~ICLe~~~~~~~v~~lpCgH~FH~~CI~~WL~---~~~tCPlC 252 (274)
.+...|+||++.+..+ ..++|||.||..||.+|++ .+.+||+|
T Consensus 13 ~~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 13 QVEASCSVCLEYLKEP---VIIECGHNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp CCCCBCSSSCCBCSSC---CCCSSCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred ccCCCCccCCcccCcc---EeCCCCCccCHHHHHHHHHhcCCCCCCCCC
Confidence 4667999999999876 5689999999999999954 56789998
No 39
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.08 E-value=7.9e-11 Score=86.08 Aligned_cols=51 Identities=18% Similarity=0.473 Sum_probs=42.6
Q ss_pred CCcccccccccccccCCeeEEeCCCCccChhhHHHHHhcC--CCCccccccccCC
Q 024005 207 EDELTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQQ--GTCPVCKLRAGSG 259 (274)
Q Consensus 207 ~e~~~C~ICLe~~~~~~~v~~lpCgH~FH~~CI~~WL~~~--~tCPlCR~~i~~~ 259 (274)
+....|+||.+.+..++. ...|+|.||..||.+||+.+ .+||+||.....+
T Consensus 13 ~~i~~C~IC~~~i~~g~~--C~~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~~~ 65 (74)
T 2ct0_A 13 DAVKICNICHSLLIQGQS--CETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHE 65 (74)
T ss_dssp SSSCBCSSSCCBCSSSEE--CSSSCCEECHHHHHHHSTTCSSCCCTTTCSCCCSC
T ss_pred CCCCcCcchhhHcccCCc--cCCCCchhhHHHHHHHHHhcCCCCCCCCcCcCCCC
Confidence 456789999999987643 33799999999999999987 7999999876643
No 40
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.07 E-value=3.9e-11 Score=93.24 Aligned_cols=49 Identities=33% Similarity=0.626 Sum_probs=42.1
Q ss_pred CcccccccccccccCCeeEEeCCCCccChhhHHHHHhcCC---CCccccccccCC
Q 024005 208 DELTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQQG---TCPVCKLRAGSG 259 (274)
Q Consensus 208 e~~~C~ICLe~~~~~~~v~~lpCgH~FH~~CI~~WL~~~~---tCPlCR~~i~~~ 259 (274)
+...|+||++.+..+ ..++|||.||..||..|+..+. +||+||..+...
T Consensus 20 ~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~ 71 (112)
T 1jm7_A 20 KILECPICLELIKEP---VSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKR 71 (112)
T ss_dssp HHTSCSSSCCCCSSC---CBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCTT
T ss_pred CCCCCcccChhhcCe---EECCCCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCHh
Confidence 456899999999865 5589999999999999998764 899999988764
No 41
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=99.07 E-value=3.8e-11 Score=100.07 Aligned_cols=50 Identities=36% Similarity=0.809 Sum_probs=42.4
Q ss_pred CCcccccccccccccCCeeEEeCCCCccChhhHHHHHhc-CCCCccccccccC
Q 024005 207 EDELTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQ-QGTCPVCKLRAGS 258 (274)
Q Consensus 207 ~e~~~C~ICLe~~~~~~~v~~lpCgH~FH~~CI~~WL~~-~~tCPlCR~~i~~ 258 (274)
.+...|+||++.+.. .+..++|||.||..||.+|++. +..||+||..+..
T Consensus 52 ~~~~~C~IC~~~~~~--p~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 102 (165)
T 2ckl_B 52 HSELMCPICLDMLKN--TMTTKECLHRFCADCIITALRSGNKECPTCRKKLVS 102 (165)
T ss_dssp HHHHBCTTTSSBCSS--EEEETTTCCEEEHHHHHHHHHTTCCBCTTTCCBCCS
T ss_pred CCCCCCcccChHhhC--cCEeCCCCChhHHHHHHHHHHhCcCCCCCCCCcCCC
Confidence 356799999999985 3444599999999999999997 7789999998854
No 42
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.06 E-value=6.5e-11 Score=94.03 Aligned_cols=53 Identities=23% Similarity=0.652 Sum_probs=45.8
Q ss_pred CCcccccccccccccC----CeeEEeCCCCccChhhHHHHHhcCCCCccccccccCC
Q 024005 207 EDELTCTVCLEQVNVG----EIVRSLPCLHQFHANCIDPWLRQQGTCPVCKLRAGSG 259 (274)
Q Consensus 207 ~e~~~C~ICLe~~~~~----~~v~~lpCgH~FH~~CI~~WL~~~~tCPlCR~~i~~~ 259 (274)
++...|+||++.+... .....++|||.||..||.+|++.+.+||+||..+..+
T Consensus 70 ~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 126 (133)
T 4ap4_A 70 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHK 126 (133)
T ss_dssp SSSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHHCSBCTTTCCBCCGG
T ss_pred CCCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHcCCCCCCCCCcCChh
Confidence 4677899999998753 3457789999999999999999999999999998764
No 43
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=99.05 E-value=5.5e-11 Score=98.17 Aligned_cols=49 Identities=24% Similarity=0.659 Sum_probs=43.0
Q ss_pred CcccccccccccccCCeeEEeCCCCccChhhHHHHHhcCC-CCccccccccCC
Q 024005 208 DELTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQQG-TCPVCKLRAGSG 259 (274)
Q Consensus 208 e~~~C~ICLe~~~~~~~v~~lpCgH~FH~~CI~~WL~~~~-tCPlCR~~i~~~ 259 (274)
+...|+||++.+..+ ..++|||.||..||..|+.... +||+||..+...
T Consensus 77 ~~~~C~IC~~~~~~p---v~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 126 (150)
T 1z6u_A 77 QSFMCVCCQELVYQP---VTTECFHNVCKDCLQRSFKAQVFSCPACRHDLGQN 126 (150)
T ss_dssp HHTBCTTTSSBCSSE---EECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTT
T ss_pred cCCEeecCChhhcCC---EEcCCCCchhHHHHHHHHHhCCCcCCCCCccCCCC
Confidence 567899999999865 5689999999999999998765 899999998765
No 44
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=99.03 E-value=2.8e-11 Score=94.94 Aligned_cols=49 Identities=29% Similarity=0.669 Sum_probs=42.7
Q ss_pred CCcccccccccccccCCeeEEeCCCCccChhhHHHHHhc-CCCCccccccccC
Q 024005 207 EDELTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQ-QGTCPVCKLRAGS 258 (274)
Q Consensus 207 ~e~~~C~ICLe~~~~~~~v~~lpCgH~FH~~CI~~WL~~-~~tCPlCR~~i~~ 258 (274)
.++..|+||++.+..+ ..++|||.||..||.+|+.. +.+||+||..+..
T Consensus 13 ~~~~~C~iC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 62 (115)
T 3l11_A 13 LSECQCGICMEILVEP---VTLPCNHTLCKPCFQSTVEKASLCCPFCRRRVSS 62 (115)
T ss_dssp HHHHBCTTTCSBCSSC---EECTTSCEECHHHHCCCCCTTTSBCTTTCCBCHH
T ss_pred CCCCCCccCCcccCce---eEcCCCCHHhHHHHHHHHhHCcCCCCCCCcccCc
Confidence 4567999999999866 67899999999999999976 6689999998763
No 45
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=99.03 E-value=8.4e-11 Score=92.84 Aligned_cols=50 Identities=30% Similarity=0.604 Sum_probs=43.6
Q ss_pred CCcccccccccccccCCeeEEeCCCCccChhhHHHHHhcCC-CCccccccccCC
Q 024005 207 EDELTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQQG-TCPVCKLRAGSG 259 (274)
Q Consensus 207 ~e~~~C~ICLe~~~~~~~v~~lpCgH~FH~~CI~~WL~~~~-tCPlCR~~i~~~ 259 (274)
++...|+||++.+..+ ..++|||.||..||.+|++.+. +||+||..+...
T Consensus 16 ~~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 66 (118)
T 3hct_A 16 ESKYECPICLMALREA---VQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLEN 66 (118)
T ss_dssp CGGGBCTTTCSBCSSE---EECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGG
T ss_pred CCCCCCCcCChhhcCe---EECCcCChhhHHHHHHHHhhCCCCCCCCCCCcCHH
Confidence 5677999999999865 6689999999999999998765 999999988653
No 46
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=99.02 E-value=1.6e-10 Score=86.35 Aligned_cols=50 Identities=16% Similarity=0.043 Sum_probs=45.0
Q ss_pred CCcccccccccccccCCeeEEeCCCCccChhhHHHHHhcCCCCccccccccCC
Q 024005 207 EDELTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQQGTCPVCKLRAGSG 259 (274)
Q Consensus 207 ~e~~~C~ICLe~~~~~~~v~~lpCgH~FH~~CI~~WL~~~~tCPlCR~~i~~~ 259 (274)
.++..|+||++.+..+ +.++|||.|+..||.+|+..+.+||+||..+...
T Consensus 12 p~~~~CpI~~~~m~dP---V~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~~ 61 (85)
T 2kr4_A 12 PDEFRDPLMDTLMTDP---VRLPSGTVMDRSIILRHLLNSPTDPFNRQMLTES 61 (85)
T ss_dssp CTTTBCTTTCSBCSSE---EECTTSCEEEHHHHHHHHHHCSBCTTTCCBCCGG
T ss_pred chheECcccCchhcCC---eECCCCCEECHHHHHHHHhcCCCCCCCcCCCChH
Confidence 4678999999999977 7889999999999999999999999999988653
No 47
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=98.99 E-value=3.7e-10 Score=83.27 Aligned_cols=54 Identities=24% Similarity=0.553 Sum_probs=42.0
Q ss_pred CCcccccccccccccCCeeEEe--CCCCccChhhHHHHHhc-CCCCccccccccCCCC
Q 024005 207 EDELTCTVCLEQVNVGEIVRSL--PCLHQFHANCIDPWLRQ-QGTCPVCKLRAGSGWH 261 (274)
Q Consensus 207 ~e~~~C~ICLe~~~~~~~v~~l--pCgH~FH~~CI~~WL~~-~~tCPlCR~~i~~~~~ 261 (274)
+++..|+||++.+...+. ..+ +|||.||..|+..|+.. +..||.||+.+.....
T Consensus 9 ~~~~~CpICle~~~~~d~-~~~p~~CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~~~~ 65 (78)
T 1e4u_A 9 EDPVECPLCMEPLEIDDI-NFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPEDPA 65 (78)
T ss_dssp CCCCBCTTTCCBCCTTTT-TCCSSTTSCCCCHHHHHHHTTSSCSBCTTTCCBCSSCSS
T ss_pred ccCCcCCccCccCccccc-cccccCCCCCcCHHHHHHHHhcCCCCCCCCCCccCCCch
Confidence 467799999998864332 234 49999999999998743 5689999999876543
No 48
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=98.98 E-value=1.4e-10 Score=91.07 Aligned_cols=49 Identities=22% Similarity=0.514 Sum_probs=42.8
Q ss_pred CcccccccccccccCCeeEEeCCCCccChhhHHHHHhc-CCCCccccccccCC
Q 024005 208 DELTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQ-QGTCPVCKLRAGSG 259 (274)
Q Consensus 208 e~~~C~ICLe~~~~~~~v~~lpCgH~FH~~CI~~WL~~-~~tCPlCR~~i~~~ 259 (274)
++..|+||++.+..+ ..++|||.||..||.+|++. +.+||+||..+...
T Consensus 22 ~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 71 (116)
T 1rmd_A 22 KSISCQICEHILADP---VETSCKHLFCRICILRCLKVMGSYCPSCRYPCFPT 71 (116)
T ss_dssp HHTBCTTTCSBCSSE---EECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGG
T ss_pred CCCCCCCCCcHhcCc---EEcCCCCcccHHHHHHHHhHCcCcCCCCCCCCCHh
Confidence 467899999999855 56899999999999999987 77999999998754
No 49
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=98.97 E-value=2.9e-10 Score=87.65 Aligned_cols=50 Identities=16% Similarity=0.050 Sum_probs=45.2
Q ss_pred CCcccccccccccccCCeeEEeCCCCccChhhHHHHHhcCCCCccccccccCC
Q 024005 207 EDELTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQQGTCPVCKLRAGSG 259 (274)
Q Consensus 207 ~e~~~C~ICLe~~~~~~~v~~lpCgH~FH~~CI~~WL~~~~tCPlCR~~i~~~ 259 (274)
.++..|+||++.+..+ +.++|||.|+..||.+|+..+.+||+||.++...
T Consensus 27 p~~~~CpI~~~~m~dP---V~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~~ 76 (100)
T 2kre_A 27 PDEFRDPLMDTLMTDP---VRLPSGTIMDRSIILRHLLNSPTDPFNRQTLTES 76 (100)
T ss_dssp STTTBCTTTCSBCSSE---EEETTTEEEEHHHHHHHTTSCSBCSSSCCBCCTT
T ss_pred cHhhCCcCccCcccCC---eECCCCCEEchHHHHHHHHcCCCCCCCCCCCChh
Confidence 4678999999999977 7889999999999999999899999999988753
No 50
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=98.96 E-value=4.1e-10 Score=86.50 Aligned_cols=50 Identities=16% Similarity=0.047 Sum_probs=45.1
Q ss_pred CCcccccccccccccCCeeEEeCCC-CccChhhHHHHHhcCCCCccccccccCC
Q 024005 207 EDELTCTVCLEQVNVGEIVRSLPCL-HQFHANCIDPWLRQQGTCPVCKLRAGSG 259 (274)
Q Consensus 207 ~e~~~C~ICLe~~~~~~~v~~lpCg-H~FH~~CI~~WL~~~~tCPlCR~~i~~~ 259 (274)
.++..|+||++.+..+ +.++|| |.|+..||.+|+..+.+||+||.++...
T Consensus 20 p~~~~CpI~~~~m~dP---V~~~cG~htf~r~cI~~~l~~~~~cP~~~~~l~~~ 70 (98)
T 1wgm_A 20 CDEFLDPIMSTLMCDP---VVLPSSRVTVDRSTIARHLLSDQTDPFNRSPLTMD 70 (98)
T ss_dssp CTTTBCTTTCSBCSSE---EECTTTCCEEEHHHHHHHTTTSCBCTTTCSBCCTT
T ss_pred cHhcCCcCccccccCC---eECCCCCeEECHHHHHHHHHhCCCCCCCCCCCChh
Confidence 4678999999999977 778999 9999999999999999999999988753
No 51
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=98.96 E-value=2.8e-10 Score=80.61 Aligned_cols=48 Identities=19% Similarity=0.396 Sum_probs=40.8
Q ss_pred CcccccccccccccCCeeEEe--CCCCc-cChhhHHHHHhcCCCCccccccccC
Q 024005 208 DELTCTVCLEQVNVGEIVRSL--PCLHQ-FHANCIDPWLRQQGTCPVCKLRAGS 258 (274)
Q Consensus 208 e~~~C~ICLe~~~~~~~v~~l--pCgH~-FH~~CI~~WL~~~~tCPlCR~~i~~ 258 (274)
++..|.||++..... ..+ ||||. ||..|+..|.+.+..||+||+++..
T Consensus 7 ~~~~C~IC~~~~~~~---~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~~ 57 (64)
T 2vje_A 7 AIEPCVICQGRPKNG---CIVHGKTGHLMACFTCAKKLKKRNKPCPVCRQPIQM 57 (64)
T ss_dssp GGSCCTTTSSSCSCE---EEEETTEEEEEECHHHHHHHHHTTCCCTTTCCCCCE
T ss_pred CcCCCCcCCCCCCCE---EEECCCCCChhhHHHHHHHHHHcCCcCCCcCcchhc
Confidence 556899999987644 444 99999 8999999999999999999998853
No 52
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=98.93 E-value=4e-10 Score=106.04 Aligned_cols=50 Identities=22% Similarity=0.567 Sum_probs=43.2
Q ss_pred CcccccccccccccCCeeEEeCCCCccChhhHHHHHh-cCCCCccccccccCCC
Q 024005 208 DELTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLR-QQGTCPVCKLRAGSGW 260 (274)
Q Consensus 208 e~~~C~ICLe~~~~~~~v~~lpCgH~FH~~CI~~WL~-~~~tCPlCR~~i~~~~ 260 (274)
....|+||++.+... ..+||||.||..|+..|+. .+.+||+||..+....
T Consensus 331 ~~~~C~ICle~~~~p---v~lpCGH~FC~~Ci~~wl~~~~~~CP~CR~~i~~~~ 381 (389)
T 2y1n_A 331 TFQLCKICAENDKDV---KIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKGTE 381 (389)
T ss_dssp SSSBCTTTSSSBCCE---EEETTCCEECHHHHHHHHHHTCSBCTTTCCBCCEEE
T ss_pred CCCCCCccCcCCCCe---EEeCCCChhhHHHHHHHHhcCCCCCCCCCCccCCce
Confidence 346899999998654 7899999999999999998 6889999999887643
No 53
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=98.91 E-value=2.3e-10 Score=93.48 Aligned_cols=48 Identities=19% Similarity=0.461 Sum_probs=42.2
Q ss_pred CCcccccccccccccCCeeEEeCCCCccChhhHHHHHhcCC-CCcccccccc
Q 024005 207 EDELTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQQG-TCPVCKLRAG 257 (274)
Q Consensus 207 ~e~~~C~ICLe~~~~~~~v~~lpCgH~FH~~CI~~WL~~~~-tCPlCR~~i~ 257 (274)
++...|+||++.+..+ ..++|||.||..||.+|++... +||+||.++.
T Consensus 29 ~~~~~C~IC~~~~~~p---v~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~ 77 (141)
T 3knv_A 29 EAKYLCSACRNVLRRP---FQAQCGHRYCSFCLASILSSGPQNCAACVHEGI 77 (141)
T ss_dssp CGGGBCTTTCSBCSSE---EECTTSCEEEHHHHHHHGGGSCEECHHHHHTTC
T ss_pred CcCcCCCCCChhhcCc---EECCCCCccCHHHHHHHHhcCCCCCCCCCCccc
Confidence 5778999999999866 6689999999999999998765 8999999764
No 54
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.90 E-value=3.1e-10 Score=78.08 Aligned_cols=47 Identities=28% Similarity=0.678 Sum_probs=40.3
Q ss_pred CCcccccccccccccCCeeEEeCCCCccChhhHHHHHhcCCCCccccccccCC
Q 024005 207 EDELTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQQGTCPVCKLRAGSG 259 (274)
Q Consensus 207 ~e~~~C~ICLe~~~~~~~v~~lpCgH~FH~~CI~~WL~~~~tCPlCR~~i~~~ 259 (274)
++...|+||++.+..+ ..++|||.||..||..| ...||+||+.+...
T Consensus 4 ~~~~~C~IC~~~~~~p---~~l~CgH~fC~~Ci~~~---~~~CP~Cr~~~~~~ 50 (56)
T 1bor_A 4 FQFLRCQQCQAEAKCP---KLLPCLHTLCSGCLEAS---GMQCPICQAPWPLG 50 (56)
T ss_dssp CCCSSCSSSCSSCBCC---SCSTTSCCSBTTTCSSS---SSSCSSCCSSSSCC
T ss_pred ccCCCceEeCCccCCe---EEcCCCCcccHHHHccC---CCCCCcCCcEeecC
Confidence 4667899999999876 67899999999999884 67899999988754
No 55
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=98.90 E-value=6.3e-10 Score=78.49 Aligned_cols=50 Identities=18% Similarity=0.324 Sum_probs=40.4
Q ss_pred CcccccccccccccCCeeEEeCCCCc-cChhhHHHHHhcCCCCccccccccC
Q 024005 208 DELTCTVCLEQVNVGEIVRSLPCLHQ-FHANCIDPWLRQQGTCPVCKLRAGS 258 (274)
Q Consensus 208 e~~~C~ICLe~~~~~~~v~~lpCgH~-FH~~CI~~WL~~~~tCPlCR~~i~~ 258 (274)
....|.||++..... .+..+||||. ||..|+.+|.+.+..||+||+++..
T Consensus 6 ~~~~C~IC~~~~~~~-~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~~ 56 (63)
T 2vje_B 6 LLKPCSLCEKRPRDG-NIIHGRTGHLVTCFHCARRLKKAGASCPICKKEIQL 56 (63)
T ss_dssp GGSBCTTTSSSBSCE-EEEETTEEEEEECHHHHHHHHHTTCBCTTTCCBCCE
T ss_pred cCCCCcccCCcCCCe-EEEecCCCCHhHHHHHHHHHHHhCCcCCCcCchhhc
Confidence 456899999986643 1122499998 9999999999988999999998854
No 56
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.86 E-value=3.5e-10 Score=89.14 Aligned_cols=46 Identities=30% Similarity=0.605 Sum_probs=40.3
Q ss_pred CcccccccccccccCCeeEEe-CCCCccChhhHHHHHhcCCCCccccccccC
Q 024005 208 DELTCTVCLEQVNVGEIVRSL-PCLHQFHANCIDPWLRQQGTCPVCKLRAGS 258 (274)
Q Consensus 208 e~~~C~ICLe~~~~~~~v~~l-pCgH~FH~~CI~~WL~~~~tCPlCR~~i~~ 258 (274)
+...|+||++.+..+ ..+ +|||.||..||..|+. ..||+||..+..
T Consensus 21 ~~~~C~IC~~~~~~p---v~~~~CgH~fC~~Ci~~~~~--~~CP~Cr~~~~~ 67 (117)
T 1jm7_B 21 KLLRCSRCTNILREP---VCLGGCEHIFCSNCVSDCIG--TGCPVCYTPAWI 67 (117)
T ss_dssp HTTSCSSSCSCCSSC---BCCCSSSCCBCTTTGGGGTT--TBCSSSCCBCSC
T ss_pred hCCCCCCCChHhhCc---cEeCCCCCHHHHHHHHHHhc--CCCcCCCCcCcc
Confidence 567899999999866 566 8999999999999987 889999998853
No 57
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=98.84 E-value=5.4e-10 Score=81.21 Aligned_cols=45 Identities=22% Similarity=0.533 Sum_probs=38.9
Q ss_pred CcccccccccccccCCeeEEeCCCCc-cChhhHHHHHhcCCCCccccccccCC
Q 024005 208 DELTCTVCLEQVNVGEIVRSLPCLHQ-FHANCIDPWLRQQGTCPVCKLRAGSG 259 (274)
Q Consensus 208 e~~~C~ICLe~~~~~~~v~~lpCgH~-FH~~CI~~WL~~~~tCPlCR~~i~~~ 259 (274)
++..|+||++.+... ..+||||. ||..|+..| ..||+||..+...
T Consensus 23 ~~~~C~iC~~~~~~~---~~~pCgH~~~C~~C~~~~----~~CP~Cr~~i~~~ 68 (74)
T 4ic3_A 23 EEKLCKICMDRNIAI---VFVPCGHLVTCKQCAEAV----DKCPMCYTVITFK 68 (74)
T ss_dssp HHTBCTTTSSSBCCE---EEETTCCBCCCHHHHTTC----SBCTTTCCBCSEE
T ss_pred cCCCCCCCCCCCCCE---EEcCCCChhHHHHhhhcC----ccCCCcCcCccCc
Confidence 456899999998754 77899999 999999998 8899999988653
No 58
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.77 E-value=3.4e-09 Score=94.12 Aligned_cols=49 Identities=16% Similarity=0.142 Sum_probs=42.9
Q ss_pred CCcccccccccccccCCeeEEeCCCCccChhhHHHHHhcC-CCCccccccccC
Q 024005 207 EDELTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQQ-GTCPVCKLRAGS 258 (274)
Q Consensus 207 ~e~~~C~ICLe~~~~~~~v~~lpCgH~FH~~CI~~WL~~~-~tCPlCR~~i~~ 258 (274)
.+...|+||++.+..+ +++||||.||..||.+|+..+ .+||+||.++..
T Consensus 206 ~~~~~c~i~~~~~~dP---v~~~~gh~f~~~~i~~~~~~~~~~cP~~~~~~~~ 255 (281)
T 2c2l_A 206 PDYLCGKISFELMREP---CITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQ 255 (281)
T ss_dssp CSTTBCTTTCSBCSSE---EECSSCCEEETTHHHHHHHHTCSSCTTTCCCCCG
T ss_pred CcccCCcCcCCHhcCC---eECCCCCEECHHHHHHHHHHCCCCCcCCCCCCch
Confidence 4678999999999977 789999999999999999874 459999998864
No 59
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=98.74 E-value=3.7e-09 Score=88.32 Aligned_cols=50 Identities=30% Similarity=0.604 Sum_probs=43.4
Q ss_pred CCcccccccccccccCCeeEEeCCCCccChhhHHHHHhcCC-CCccccccccCC
Q 024005 207 EDELTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQQG-TCPVCKLRAGSG 259 (274)
Q Consensus 207 ~e~~~C~ICLe~~~~~~~v~~lpCgH~FH~~CI~~WL~~~~-tCPlCR~~i~~~ 259 (274)
++...|+||++.+..+ ..++|||.||..||.+|++.+. +||+||..+...
T Consensus 16 ~~~~~C~IC~~~~~~p---v~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 66 (170)
T 3hcs_A 16 ESKYECPICLMALREA---VQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLEN 66 (170)
T ss_dssp CGGGBCTTTCSBCSSE---EECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGG
T ss_pred CCCCCCCCCChhhcCc---EECCCCCHHHHHHHHHHHHhCCCCCCCCccCcchh
Confidence 5678999999999865 5689999999999999998754 999999988664
No 60
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.72 E-value=4.9e-09 Score=79.61 Aligned_cols=46 Identities=20% Similarity=0.483 Sum_probs=39.0
Q ss_pred CCcccccccccccccCCeeEEeC-CCCccChhhHHHHHhcC------CCCcc--cccc
Q 024005 207 EDELTCTVCLEQVNVGEIVRSLP-CLHQFHANCIDPWLRQQ------GTCPV--CKLR 255 (274)
Q Consensus 207 ~e~~~C~ICLe~~~~~~~v~~lp-CgH~FH~~CI~~WL~~~------~tCPl--CR~~ 255 (274)
.++..|+||++.+..+ +.++ |||.|+..||.+|+..+ .+||+ |+..
T Consensus 5 ~~~~~CPI~~~~~~dP---V~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~ 59 (94)
T 2yu4_A 5 SSGFTCPITKEEMKKP---VKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHT 59 (94)
T ss_dssp SSCCBCTTTCSBCSSE---EEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCC
T ss_pred CcEeECcCcCchhcCC---EEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCccc
Confidence 3567899999999966 6775 99999999999999764 48999 9855
No 61
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.71 E-value=1e-08 Score=74.50 Aligned_cols=45 Identities=22% Similarity=0.541 Sum_probs=37.7
Q ss_pred CcccccccccccccCCeeEEeCCCCc-cChhhHHHHHhcCCCCccccccccCC
Q 024005 208 DELTCTVCLEQVNVGEIVRSLPCLHQ-FHANCIDPWLRQQGTCPVCKLRAGSG 259 (274)
Q Consensus 208 e~~~C~ICLe~~~~~~~v~~lpCgH~-FH~~CI~~WL~~~~tCPlCR~~i~~~ 259 (274)
++..|+||++.+... ..+||||. ||..|+.. ...||+||.++...
T Consensus 24 ~~~~C~IC~~~~~~~---~~~pCgH~~~C~~C~~~----~~~CP~Cr~~i~~~ 69 (75)
T 2ecg_A 24 EEKLCKICMDRNIAI---VFVPCGHLVTCKQCAEA----VDKCPMCYTVITFK 69 (75)
T ss_dssp HHHSCSSSCSSCCCB---CCSSSCCCCBCHHHHHH----CSBCTTTCCBCCCC
T ss_pred CCCCCCcCCCCCCCE---EEecCCCHHHHHHHhhC----CCCCccCCceecCc
Confidence 456899999998755 67899999 99999964 47899999998764
No 62
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=98.71 E-value=2.5e-09 Score=98.67 Aligned_cols=55 Identities=29% Similarity=0.794 Sum_probs=42.6
Q ss_pred CCcccccccccccccCCee----EE-eCCCCccChhhHHHHHhcC-----------CCCccccccccCCCC
Q 024005 207 EDELTCTVCLEQVNVGEIV----RS-LPCLHQFHANCIDPWLRQQ-----------GTCPVCKLRAGSGWH 261 (274)
Q Consensus 207 ~e~~~C~ICLe~~~~~~~v----~~-lpCgH~FH~~CI~~WL~~~-----------~tCPlCR~~i~~~~~ 261 (274)
+....|+||++.+..+..+ .. .+|+|.||..|+.+||+.. ++||.||+++..++.
T Consensus 306 e~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs~sf~ 376 (381)
T 3k1l_B 306 NEELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLSTSFA 376 (381)
T ss_dssp CSCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEEGGGG
T ss_pred cCCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCCccHH
Confidence 4566899999998863222 22 4699999999999999753 469999999987654
No 63
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=98.71 E-value=8.2e-09 Score=72.26 Aligned_cols=49 Identities=24% Similarity=0.619 Sum_probs=38.3
Q ss_pred CCcccccccccccccCCeeEEeCCC--C---ccChhhHHHHHhc--CCCCccccccccC
Q 024005 207 EDELTCTVCLEQVNVGEIVRSLPCL--H---QFHANCIDPWLRQ--QGTCPVCKLRAGS 258 (274)
Q Consensus 207 ~e~~~C~ICLe~~~~~~~v~~lpCg--H---~FH~~CI~~WL~~--~~tCPlCR~~i~~ 258 (274)
++...|.||+++.. +.+ .+||. + .||..|+.+|+.. +.+||+||+.+..
T Consensus 4 ~~~~~CrIC~~~~~--~~l-~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~~ 59 (60)
T 1vyx_A 4 EDVPVCWICNEELG--NER-FRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYNT 59 (60)
T ss_dssp CSCCEETTTTEECS--CCC-CCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCCC
T ss_pred CCCCEeEEeecCCC--Cce-ecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeeec
Confidence 46678999999843 333 68854 4 8999999999964 6789999998753
No 64
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.62 E-value=2.5e-08 Score=71.39 Aligned_cols=46 Identities=26% Similarity=0.595 Sum_probs=38.6
Q ss_pred CCcccccccccccccCCeeEEeCCCCc-cChhhHHHHHhcCCCCccccccccCC
Q 024005 207 EDELTCTVCLEQVNVGEIVRSLPCLHQ-FHANCIDPWLRQQGTCPVCKLRAGSG 259 (274)
Q Consensus 207 ~e~~~C~ICLe~~~~~~~v~~lpCgH~-FH~~CI~~WL~~~~tCPlCR~~i~~~ 259 (274)
++...|.||++..... ..+||||. ||..|+.. ...||+||..+...
T Consensus 13 ~~~~~C~IC~~~~~~~---v~~pCgH~~~C~~C~~~----~~~CP~CR~~i~~~ 59 (68)
T 2ea5_A 13 ENSKDCVVCQNGTVNW---VLLPCRHTCLCDGCVKY----FQQCPMCRQFVQES 59 (68)
T ss_dssp CCSSCCSSSSSSCCCC---EETTTTBCCSCTTHHHH----CSSCTTTCCCCCCE
T ss_pred CCCCCCCCcCcCCCCE---EEECCCChhhhHHHHhc----CCCCCCCCcchhce
Confidence 4567899999987654 88999999 99999874 57899999988764
No 65
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=98.59 E-value=2e-08 Score=85.16 Aligned_cols=50 Identities=16% Similarity=0.131 Sum_probs=43.3
Q ss_pred CCcccccccccccccCCeeEEeCCCCccChhhHHHHHhcC-CCCccccccccCC
Q 024005 207 EDELTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQQ-GTCPVCKLRAGSG 259 (274)
Q Consensus 207 ~e~~~C~ICLe~~~~~~~v~~lpCgH~FH~~CI~~WL~~~-~tCPlCR~~i~~~ 259 (274)
.+...|+||++.+..+ +.+||||.|+..||..|+..+ .+||+|+.++...
T Consensus 104 p~~f~CPI~~elm~DP---V~~~~Ghtfer~~I~~~l~~~~~tcP~t~~~l~~~ 154 (179)
T 2f42_A 104 PDYLCGKISFELMREP---CITPSGITYDRKDIEEHLQRVGHFDPVTRSPLTQD 154 (179)
T ss_dssp CGGGBCTTTCSBCSSE---EECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGG
T ss_pred cHhhcccCccccCCCC---eECCCCCEECHHHHHHHHHhCCCCCCCCcCCCChh
Confidence 4678999999999976 778999999999999999874 4799999988653
No 66
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.53 E-value=3.4e-08 Score=74.60 Aligned_cols=48 Identities=21% Similarity=0.562 Sum_probs=39.3
Q ss_pred CcccccccccccccCCeeEEeCCCCccChhhHHHHHhc--------CCCCcc--cccc
Q 024005 208 DELTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQ--------QGTCPV--CKLR 255 (274)
Q Consensus 208 e~~~C~ICLe~~~~~~~v~~lpCgH~FH~~CI~~WL~~--------~~tCPl--CR~~ 255 (274)
+..+|+||++.+..++.+...+|||.||..|+..++.. ...||. |+..
T Consensus 4 ~~~~C~IC~~~~~~~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~ 61 (94)
T 1wim_A 4 GSSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQ 61 (94)
T ss_dssp SBCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSC
T ss_pred CCcCCcccCcccccccceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCC
Confidence 45689999999987665555679999999999999863 237999 9987
No 67
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=98.52 E-value=1.6e-08 Score=74.53 Aligned_cols=45 Identities=29% Similarity=0.648 Sum_probs=37.9
Q ss_pred CcccccccccccccCCeeEEeCCCCc-cChhhHHHHHhcCCCCccccccccCC
Q 024005 208 DELTCTVCLEQVNVGEIVRSLPCLHQ-FHANCIDPWLRQQGTCPVCKLRAGSG 259 (274)
Q Consensus 208 e~~~C~ICLe~~~~~~~v~~lpCgH~-FH~~CI~~WL~~~~tCPlCR~~i~~~ 259 (274)
++..|.||++..... ..+||||. ||..|+..| ..||+||..+...
T Consensus 17 ~~~~C~IC~~~~~~~---v~~pCgH~~~C~~C~~~~----~~CP~Cr~~i~~~ 62 (79)
T 2yho_A 17 EAMLCMVCCEEEINS---TFCPCGHTVCCESCAAQL----QSCPVCRSRVEHV 62 (79)
T ss_dssp HHTBCTTTSSSBCCE---EEETTCBCCBCHHHHTTC----SBCTTTCCBCCEE
T ss_pred CCCEeEEeCcccCcE---EEECCCCHHHHHHHHHhc----CcCCCCCchhhCe
Confidence 456899999987654 78999999 999999877 4999999988754
No 68
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=98.47 E-value=6.5e-08 Score=86.33 Aligned_cols=50 Identities=26% Similarity=0.480 Sum_probs=42.0
Q ss_pred CCcccccccccccccCCeeEEeCCCCccChhhHHHHHhcC--CCCcc--ccccccC
Q 024005 207 EDELTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQQ--GTCPV--CKLRAGS 258 (274)
Q Consensus 207 ~e~~~C~ICLe~~~~~~~v~~lpCgH~FH~~CI~~WL~~~--~tCPl--CR~~i~~ 258 (274)
..+..|+||++.+. +.|+...|||.||..||.+|++.+ .+||+ ||+.+..
T Consensus 179 ~~el~CPIcl~~f~--DPVts~~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~~ 232 (267)
T 3htk_C 179 KIELTCPITCKPYE--APLISRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVSM 232 (267)
T ss_dssp BCCSBCTTTSSBCS--SEEEESSSCCEEEHHHHHHHSTTCSCEECSGGGCSCEECG
T ss_pred ceeeECcCccCccc--CCeeeCCCCCcccHHHHHHHHHhCCCCCCCcccccCcCch
Confidence 56789999999998 445556899999999999999865 47999 9997754
No 69
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=98.41 E-value=7.7e-08 Score=67.42 Aligned_cols=48 Identities=8% Similarity=0.145 Sum_probs=41.9
Q ss_pred ccccccccccccCCeeEEe-CCCCccChhhHHHHHhcCCCCccccccccCCC
Q 024005 210 LTCTVCLEQVNVGEIVRSL-PCLHQFHANCIDPWLRQQGTCPVCKLRAGSGW 260 (274)
Q Consensus 210 ~~C~ICLe~~~~~~~v~~l-pCgH~FH~~CI~~WL~~~~tCPlCR~~i~~~~ 260 (274)
..|+||++.+..+ ..+ +|||.|...||.+|++.+.+||++++++....
T Consensus 4 ~~CpIs~~~m~dP---V~~~~sG~~yer~~I~~~l~~~~~cP~t~~~L~~~~ 52 (61)
T 2bay_A 4 MLCAISGKVPRRP---VLSPKSRTIFEKSLLEQYVKDTGNDPITNEPLSIEE 52 (61)
T ss_dssp CCCTTTCSCCSSE---EEETTTTEEEEHHHHHHHHHHHSBCTTTCCBCCGGG
T ss_pred EEecCCCCCCCCC---EEeCCCCcEEcHHHHHHHHHhCCCCcCCcCCCChhh
Confidence 4799999999955 556 89999999999999999899999999886543
No 70
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=98.40 E-value=5e-08 Score=90.73 Aligned_cols=46 Identities=26% Similarity=0.622 Sum_probs=39.5
Q ss_pred CCcccccccccccccCCeeEEeCCCCc-cChhhHHHHHhcCCCCccccccccCC
Q 024005 207 EDELTCTVCLEQVNVGEIVRSLPCLHQ-FHANCIDPWLRQQGTCPVCKLRAGSG 259 (274)
Q Consensus 207 ~e~~~C~ICLe~~~~~~~v~~lpCgH~-FH~~CI~~WL~~~~tCPlCR~~i~~~ 259 (274)
+++..|+||++.+... ..+||||. ||..|+..| ..||+||..+...
T Consensus 293 ~~~~~C~IC~~~~~~~---v~lpCgH~~fC~~C~~~~----~~CP~CR~~i~~~ 339 (345)
T 3t6p_A 293 QEERTCKVCMDKEVSV---VFIPCGHLVVCQECAPSL----RKCPICRGIIKGT 339 (345)
T ss_dssp HTTCBCTTTSSSBCCE---EEETTCCEEECTTTGGGC----SBCTTTCCBCCEE
T ss_pred cCCCCCCccCCcCCce---EEcCCCChhHhHHHHhcC----CcCCCCCCCccCe
Confidence 3567899999998755 77899999 999999988 7899999988653
No 71
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=97.92 E-value=6.3e-06 Score=62.93 Aligned_cols=49 Identities=22% Similarity=0.417 Sum_probs=39.8
Q ss_pred cccccccccccCCeeEEeCCCCccChhhHHHHHhc-CCCCccccccccCCCC
Q 024005 211 TCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQ-QGTCPVCKLRAGSGWH 261 (274)
Q Consensus 211 ~C~ICLe~~~~~~~v~~lpCgH~FH~~CI~~WL~~-~~tCPlCR~~i~~~~~ 261 (274)
-|.+|--.+. ...+.+||+|.||.+|+..|.++ .++||.|+.++..-..
T Consensus 3 fC~~C~~Pi~--iygRmIPCkHvFCydCa~~~~~~~~k~Cp~C~~~V~rVe~ 52 (101)
T 3vk6_A 3 FCDKCGLPIK--VYGRMIPCKHVFCYDCAILHEKKGDKMCPGCSDPVQRIEQ 52 (101)
T ss_dssp BCTTTCSBCS--EEEEEETTCCEEEHHHHHHHHHTTCCBCTTTCCBCSEEEE
T ss_pred ecCccCCCeE--EEeeeccccccHHHHHHHHHHhccCCCCcCcCCeeeeeEE
Confidence 4788876665 34588999999999999999854 6899999999876544
No 72
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=97.77 E-value=2.4e-05 Score=69.06 Aligned_cols=50 Identities=18% Similarity=0.489 Sum_probs=40.3
Q ss_pred CcccccccccccccCCeeEEeCCCCccChhhHHHHHhcCC--CCccccccccCC
Q 024005 208 DELTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQQG--TCPVCKLRAGSG 259 (274)
Q Consensus 208 e~~~C~ICLe~~~~~~~v~~lpCgH~FH~~CI~~WL~~~~--tCPlCR~~i~~~ 259 (274)
....|.||.+-+..+. .+-.|+|.||..|+.+|++.+. .||.|+...+..
T Consensus 179 ~i~~C~iC~~iv~~g~--~C~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~~~ 230 (238)
T 3nw0_A 179 AVKICNICHSLLIQGQ--SCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHE 230 (238)
T ss_dssp TCCBCTTTCSBCSSCE--ECSSSCCEECHHHHHHHTTTCSSCBCTTTCCBCCSC
T ss_pred CCCcCcchhhHHhCCc--ccCccChHHHHHHHHHHHHhCCCCCCCCCCCCCCCC
Confidence 4678999999999762 2334999999999999998754 899999875543
No 73
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=95.86 E-value=0.0028 Score=47.63 Aligned_cols=55 Identities=22% Similarity=0.494 Sum_probs=44.8
Q ss_pred CCcccccccccccccCCeeEEeCC-CCccChhhHHHHHhcCCCCccccccccCCCCCCCCc
Q 024005 207 EDELTCTVCLEQVNVGEIVRSLPC-LHQFHANCIDPWLRQQGTCPVCKLRAGSGWHETRQV 266 (274)
Q Consensus 207 ~e~~~C~ICLe~~~~~~~v~~lpC-gH~FH~~CI~~WL~~~~tCPlCR~~i~~~~~~~~~~ 266 (274)
-....|-.|+-..+ + .+.| .|++|..|+.-.|+.+..||+|+.+++.+-.-+.+.
T Consensus 26 ~G~~nCKsCWf~~k-~----LV~C~dHYLCl~CLtlmL~~SdrCpIC~~pLPtkl~~~~~P 81 (99)
T 2ko5_A 26 LGPQFCKSCWFENK-G----LVECNNHYLCLNCLTLLLSVSNRCPICKMPLPTKLRPSAAP 81 (99)
T ss_dssp SCCCCCCSSCSCCS-S----EEECSSCEEEHHHHHHTCSSSSEETTTTEECCCCSCTTTSC
T ss_pred cCcccChhhccccC-C----eeeecchhhHHHHHHHHHhhccCCcccCCcCCcceecCcCC
Confidence 34568999998865 2 4556 799999999999999999999999999887666553
No 74
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=95.37 E-value=0.0065 Score=45.62 Aligned_cols=35 Identities=11% Similarity=0.465 Sum_probs=27.6
Q ss_pred CcccccccccccccCCeeEEeCCCCccChhhHHHH
Q 024005 208 DELTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPW 242 (274)
Q Consensus 208 e~~~C~ICLe~~~~~~~v~~lpCgH~FH~~CI~~W 242 (274)
++..|.||.+.+........+.|+|.||..|+..+
T Consensus 2 ee~~C~~C~~~~~~~av~~C~~C~~~~C~~Cl~~~ 36 (101)
T 2jun_A 2 EKVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKAT 36 (101)
T ss_dssp CCCBCTTCCSSSCCBCCEEETTTTEEECHHHHHHH
T ss_pred CCCCCcCCCCCCCCCceEECCcCChHHhHHHCHHH
Confidence 35689999987554444556999999999999983
No 75
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=93.67 E-value=0.047 Score=38.33 Aligned_cols=46 Identities=24% Similarity=0.496 Sum_probs=34.2
Q ss_pred CcccccccccccccCCeeEEeCCCCccChhhHHHHHhcCC----CCccccccc
Q 024005 208 DELTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQQG----TCPVCKLRA 256 (274)
Q Consensus 208 e~~~C~ICLe~~~~~~~v~~lpCgH~FH~~CI~~WL~~~~----tCPlCR~~i 256 (274)
....|.||.+. ++.+..-.|...||..|+.+.|.... .||.|+...
T Consensus 11 ~~~~C~vC~~~---~~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~~ 60 (66)
T 2lri_C 11 PGARCGVCGDG---TDVLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGDV 60 (66)
T ss_dssp TTCCCTTTSCC---TTCEECSSSCCEECHHHHCTTTCCCCSSSCCCTTTTTCC
T ss_pred CCCCcCCCCCC---CeEEECCCCCCceecccCCCccCcCCCCCEECccccCCC
Confidence 34579999753 55555555999999999998886643 699997543
No 76
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=90.60 E-value=0.12 Score=37.97 Aligned_cols=34 Identities=21% Similarity=0.526 Sum_probs=23.4
Q ss_pred CcccccccccccccCCeeEEeCCCCccChhhHHHH
Q 024005 208 DELTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPW 242 (274)
Q Consensus 208 e~~~C~ICLe~~~~~~~v~~lpCgH~FH~~CI~~W 242 (274)
.+..|.||- .+..++....--|+-+||..|+.+-
T Consensus 14 ~D~~C~VC~-~~t~~~l~pCRvC~RvfH~~CL~r~ 47 (89)
T 1wil_A 14 NDEMCDVCE-VWTAESLFPCRVCTRVFHDGCLRRM 47 (89)
T ss_dssp CSCCCTTTC-CCCSSCCSSCSSSSSCCCHHHHHHH
T ss_pred CCcccCccc-cccccceeccccccccccHhhcccc
Confidence 566899994 4444432222227999999999996
No 77
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=88.72 E-value=0.22 Score=34.12 Aligned_cols=45 Identities=31% Similarity=0.774 Sum_probs=32.6
Q ss_pred CCcccccccccccccCCeeEEeCCCCccChhhHHHHHhcC----CCCccccc
Q 024005 207 EDELTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQQ----GTCPVCKL 254 (274)
Q Consensus 207 ~e~~~C~ICLe~~~~~~~v~~lpCgH~FH~~CI~~WL~~~----~tCPlCR~ 254 (274)
..+..|.||... ++.+..-.|...||..|+..-+... =.||.|+.
T Consensus 9 ~~~~~C~vC~~~---g~ll~CD~C~~~fH~~Cl~p~l~~~p~g~W~C~~C~~ 57 (61)
T 2l5u_A 9 DHQDYCEVCQQG---GEIILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEK 57 (61)
T ss_dssp CCCSSCTTTSCC---SSEEECSSSSCEEEHHHHCTTCCSCCCSSCCCTTGGG
T ss_pred CCCCCCccCCCC---CcEEECCCCChhhhhhccCCCCCCCCCCceECccccc
Confidence 456789999874 4555555588999999998755432 25999965
No 78
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=88.54 E-value=0.25 Score=36.68 Aligned_cols=50 Identities=26% Similarity=0.638 Sum_probs=35.4
Q ss_pred CCCcccccccccccccCCeeEEeCCCCccChhhHHHHHhcCC----CCccccccccC
Q 024005 206 TEDELTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQQG----TCPVCKLRAGS 258 (274)
Q Consensus 206 ~~e~~~C~ICLe~~~~~~~v~~lpCgH~FH~~CI~~WL~~~~----tCPlCR~~i~~ 258 (274)
++.+..|.+|... ++.+..-.|.-.||..|+.+=+.... .||.|+..-..
T Consensus 22 d~n~~~C~vC~~~---g~LL~CD~C~~~fH~~Cl~PpL~~~P~g~W~C~~C~~~~~~ 75 (88)
T 1fp0_A 22 DDSATICRVCQKP---GDLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVLPDL 75 (88)
T ss_dssp SSSSSCCSSSCSS---SCCEECTTSSCEECTTSSSTTCCCCCSSSCCCCSCCCCCSS
T ss_pred CCCCCcCcCcCCC---CCEEECCCCCCceecccCCCCCCCCcCCCcCCccccCCCcc
Confidence 3566789999865 45555555889999999987654422 59999765443
No 79
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=86.52 E-value=0.25 Score=41.12 Aligned_cols=46 Identities=30% Similarity=0.598 Sum_probs=33.7
Q ss_pred CcccccccccccccCCeeEEeCCCCccChhhHHHHHhcC----CCCccccccc
Q 024005 208 DELTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQQ----GTCPVCKLRA 256 (274)
Q Consensus 208 e~~~C~ICLe~~~~~~~v~~lpCgH~FH~~CI~~WL~~~----~tCPlCR~~i 256 (274)
.+..|.+|... |+.+..-.|...||..|+.+-+... -.||.|+..-
T Consensus 3 ~~~~C~~C~~~---g~ll~Cd~C~~~~H~~C~~p~l~~~p~~~W~C~~C~~~~ 52 (184)
T 3o36_A 3 NEDWCAVCQNG---GELLCCEKCPKVFHLSCHVPTLTNFPSGEWICTFCRDLS 52 (184)
T ss_dssp SCSSCTTTCCC---SSCEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSS
T ss_pred CCCccccCCCC---CeeeecCCCCcccCccccCCCCCCCCCCCEECccccCcc
Confidence 44579999854 5555555599999999998766543 2599998654
No 80
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=86.13 E-value=0.14 Score=43.61 Aligned_cols=47 Identities=28% Similarity=0.550 Sum_probs=33.3
Q ss_pred CCcccccccccccccCCeeEEeCCCCccChhhHHHHHhcC----CCCccccccc
Q 024005 207 EDELTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQQ----GTCPVCKLRA 256 (274)
Q Consensus 207 ~e~~~C~ICLe~~~~~~~v~~lpCgH~FH~~CI~~WL~~~----~tCPlCR~~i 256 (274)
..+..|.+|... ++.+..=.|...||..|+.+.+... =.||.|+..-
T Consensus 5 ~~~~~C~~C~~~---g~ll~Cd~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~~ 55 (207)
T 3u5n_A 5 PNEDWCAVCQNG---GDLLCCEKCPKVFHLTCHVPTLLSFPSGDWICTFCRDIG 55 (207)
T ss_dssp SSCSSBTTTCCC---EEEEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSS
T ss_pred CCCCCCCCCCCC---CceEEcCCCCCccCCccCCCCCCCCCCCCEEeCceeCcc
Confidence 355679999754 4444444489999999998766543 2699997644
No 81
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=85.00 E-value=0.23 Score=34.54 Aligned_cols=46 Identities=33% Similarity=0.733 Sum_probs=32.6
Q ss_pred CCcccccccccccccCCeeEEeCCCCccChhhHHHHHhcCC----CCcccccc
Q 024005 207 EDELTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQQG----TCPVCKLR 255 (274)
Q Consensus 207 ~e~~~C~ICLe~~~~~~~v~~lpCgH~FH~~CI~~WL~~~~----tCPlCR~~ 255 (274)
..+..|.||.+. ++.+..-.|...||..|+.+-+.... .||.|...
T Consensus 6 ~~~~~C~vC~~~---g~ll~CD~C~~~fH~~Cl~ppl~~~P~g~W~C~~C~~~ 55 (66)
T 1xwh_A 6 KNEDECAVCRDG---GELICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQA 55 (66)
T ss_dssp SCCCSBSSSSCC---SSCEECSSCCCEECTTTSSSCCSSCCSSCCCCHHHHHT
T ss_pred CCCCCCccCCCC---CCEEEcCCCChhhcccccCCCcCcCCCCCeECccccCc
Confidence 356689999864 45555555889999999986554322 59999653
No 82
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=84.41 E-value=0.21 Score=34.17 Aligned_cols=47 Identities=30% Similarity=0.670 Sum_probs=32.4
Q ss_pred CCcccccccccccccCCeeEEeCCCCccChhhHHHHHhcC----CCCccccccc
Q 024005 207 EDELTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQQ----GTCPVCKLRA 256 (274)
Q Consensus 207 ~e~~~C~ICLe~~~~~~~v~~lpCgH~FH~~CI~~WL~~~----~tCPlCR~~i 256 (274)
..+..|.||.+. ++.+..-.|...||..|+.+-+... =.||.|+...
T Consensus 7 ~~~~~C~vC~~~---g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~ 57 (61)
T 1mm2_A 7 HHMEFCRVCKDG---GELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCPA 57 (61)
T ss_dssp SSCSSCTTTCCC---SSCBCCSSSCCCBCSSSSSSCCSSCCSSCCCCTTTTTTC
T ss_pred CCCCcCCCCCCC---CCEEEcCCCCHHHcccccCCCcCcCCCCccCChhhcCch
Confidence 356689999863 4444445588999999998655432 2599997643
No 83
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=84.25 E-value=0.14 Score=34.47 Aligned_cols=45 Identities=31% Similarity=0.758 Sum_probs=31.4
Q ss_pred CCcccccccccccccCCeeEEeCCCCccChhhHHHHHhcCC----CCccccc
Q 024005 207 EDELTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQQG----TCPVCKL 254 (274)
Q Consensus 207 ~e~~~C~ICLe~~~~~~~v~~lpCgH~FH~~CI~~WL~~~~----tCPlCR~ 254 (274)
..+..|.+|... ++.+..-.|...||..|+.+-+.... .||.|+.
T Consensus 7 ~~~~~C~vC~~~---g~ll~Cd~C~~~~H~~Cl~ppl~~~p~g~W~C~~C~~ 55 (56)
T 2yql_A 7 GHEDFCSVCRKS---GQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQD 55 (56)
T ss_dssp SSCCSCSSSCCS---SCCEECSSSSCEECSSSSSSCCCSCCCSSCCCHHHHC
T ss_pred CCCCCCccCCCC---CeEEEcCCCCcceECccCCCCcCCCCCCceEChhhhC
Confidence 356689999874 45555555899999999986554322 4888853
No 84
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=83.82 E-value=0.59 Score=48.48 Aligned_cols=50 Identities=16% Similarity=0.141 Sum_probs=43.7
Q ss_pred CCcccccccccccccCCeeEEeCCC-CccChhhHHHHHhcCCCCccccccccCC
Q 024005 207 EDELTCTVCLEQVNVGEIVRSLPCL-HQFHANCIDPWLRQQGTCPVCKLRAGSG 259 (274)
Q Consensus 207 ~e~~~C~ICLe~~~~~~~v~~lpCg-H~FH~~CI~~WL~~~~tCPlCR~~i~~~ 259 (274)
-+...|+|-++-+..+ +.+|.| +.|-..+|.+||..+.+||.=|+++...
T Consensus 889 P~~F~cPIs~~lM~DP---VilpsG~~TydR~~I~~wl~~~~tdP~Tr~~L~~~ 939 (968)
T 3m62_A 889 PDEFLDPLMYTIMKDP---VILPASKMNIDRSTIKAHLLSDSTDPFNRMPLKLE 939 (968)
T ss_dssp CGGGBCTTTCSBCSSE---EECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCCGG
T ss_pred cHHhCCcchhhHHhCC---eEcCCCCEEECHHHHHHHHhcCCCCCCCCCCCCcc
Confidence 5677899999999877 789987 5899999999999999999999888653
No 85
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=83.37 E-value=0.12 Score=35.28 Aligned_cols=47 Identities=30% Similarity=0.706 Sum_probs=33.4
Q ss_pred CcccccccccccccCCeeEEeCCCCccChhhHHHHHhcCC----CCcccccccc
Q 024005 208 DELTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQQG----TCPVCKLRAG 257 (274)
Q Consensus 208 e~~~C~ICLe~~~~~~~v~~lpCgH~FH~~CI~~WL~~~~----tCPlCR~~i~ 257 (274)
.+..|.+|... ++.+..-.|...||..|+.+-+.... .||.|+....
T Consensus 4 ~~~~C~vC~~~---g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~~ 54 (60)
T 2puy_A 4 HEDFCSVCRKS---GQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQDQML 54 (60)
T ss_dssp CCSSCTTTCCC---SSCEECSSSSCEECGGGSSSCCSSCCCSCCCCHHHHHHHH
T ss_pred CCCCCcCCCCC---CcEEEcCCCCcCEECCcCCCCcCCCCCCceEChhccChhh
Confidence 45689999874 55555556999999999986554322 5999976543
No 86
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=82.93 E-value=0.4 Score=31.26 Aligned_cols=44 Identities=27% Similarity=0.652 Sum_probs=30.0
Q ss_pred cccccccccccCCeeEEeCCCCccChhhHHHHHhcC----CCCccccc
Q 024005 211 TCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQQ----GTCPVCKL 254 (274)
Q Consensus 211 ~C~ICLe~~~~~~~v~~lpCgH~FH~~CI~~WL~~~----~tCPlCR~ 254 (274)
.|.||...-..++.+..-.|...||..|+.+=+... =.||.|+.
T Consensus 2 ~C~vC~~~~~~~~ll~Cd~C~~~~H~~Cl~p~l~~~P~g~W~C~~C~~ 49 (51)
T 1f62_A 2 RCKVCRKKGEDDKLILCDECNKAFHLFCLRPALYEVPDGEWQCPACQP 49 (51)
T ss_dssp CCTTTCCSSCCSCCEECTTTCCEECHHHHCTTCCSCCSSCCSCTTTSC
T ss_pred CCCCCCCCCCCCCEEECCCCChhhCcccCCCCcCCCCCCcEECcCccc
Confidence 488998764444445555589999999997644332 24998864
No 87
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=82.74 E-value=0.42 Score=33.82 Aligned_cols=52 Identities=17% Similarity=0.356 Sum_probs=35.2
Q ss_pred CCcccccccccccccCCeeEEeCCCCccChhhHHHHHhc----CCCCccccccccC
Q 024005 207 EDELTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQ----QGTCPVCKLRAGS 258 (274)
Q Consensus 207 ~e~~~C~ICLe~~~~~~~v~~lpCgH~FH~~CI~~WL~~----~~tCPlCR~~i~~ 258 (274)
++...|.||........-+..-.|..-||..|+..-... .-.||.|+..+..
T Consensus 16 ~~~~~C~~C~~~~~~~~mi~CD~C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~~~~k 71 (75)
T 2k16_A 16 NQIWICPGCNKPDDGSPMIGCDDCDDWYHWPCVGIMAAPPEEMQWFCPKCANKIKK 71 (75)
T ss_dssp CEEECBTTTTBCCSSCCEEECSSSSSEEEHHHHTCSSCCCSSSCCCCTTTHHHHCS
T ss_pred CCCcCCCCCCCCCCCCCEEEcCCCCcccccccCCCCccCCCCCCEEChhccCchhh
Confidence 355679999877543334444458999999998754432 3369999876643
No 88
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=81.80 E-value=0.38 Score=36.64 Aligned_cols=47 Identities=23% Similarity=0.533 Sum_probs=32.0
Q ss_pred CCcccccccccccccCCeeEEeCCCCccChhhHHHHHhc----CCCCcccc
Q 024005 207 EDELTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQ----QGTCPVCK 253 (274)
Q Consensus 207 ~e~~~C~ICLe~~~~~~~v~~lpCgH~FH~~CI~~WL~~----~~tCPlCR 253 (274)
.++..|.||.+.-...+.+..-.|...||..|+...+.. .-.||.|+
T Consensus 5 ~~~~~C~~C~~~g~~~~ll~C~~C~~~~H~~Cl~~~~~~~~~~~W~C~~C~ 55 (111)
T 2ysm_A 5 SSGANCAVCDSPGDLLDQFFCTTCGQHYHGMCLDIAVTPLKRAGWQCPECK 55 (111)
T ss_dssp CCCSCBTTTCCCCCTTTSEECSSSCCEECTTTTTCCCCTTTSTTCCCTTTC
T ss_pred CCCCCCcCCCCCCCCcCCeECCCCCCCcChHHhCCccccccccCccCCcCC
Confidence 356789999877333333566669999999999887542 22466654
No 89
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=81.47 E-value=1.1 Score=33.34 Aligned_cols=46 Identities=26% Similarity=0.656 Sum_probs=29.0
Q ss_pred CCcccccccccccccCCeeEEeC--CC-CccChhhHHHHHhc----CCCCccccccc
Q 024005 207 EDELTCTVCLEQVNVGEIVRSLP--CL-HQFHANCIDPWLRQ----QGTCPVCKLRA 256 (274)
Q Consensus 207 ~e~~~C~ICLe~~~~~~~v~~lp--Cg-H~FH~~CI~~WL~~----~~tCPlCR~~i 256 (274)
.+..-| ||..... ++-+..=. |. .-||..|+. |.. +-.||.|+..-
T Consensus 34 ~e~~yC-iC~~~~~-g~MI~CD~~dC~~~WfH~~CVg--l~~~p~g~W~Cp~C~~~~ 86 (91)
T 1weu_A 34 NEPTYC-LCHQVSY-GEMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQES 86 (91)
T ss_dssp CCCBCS-TTCCBCC-SCCCCCSCSSCSCCCCCSTTTT--CSSCCCSSCCCTTTCCCC
T ss_pred CCCcEE-ECCCCCC-CCEeEecCCCCCCCCEecccCC--cCcCCCCCEECcCccCcC
Confidence 344556 9988653 44444444 54 579999986 433 23699997643
No 90
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=81.06 E-value=1 Score=31.49 Aligned_cols=32 Identities=22% Similarity=0.440 Sum_probs=26.4
Q ss_pred CCcccccccccccccCCeeEEeCC-CCccChhhHHHH
Q 024005 207 EDELTCTVCLEQVNVGEIVRSLPC-LHQFHANCIDPW 242 (274)
Q Consensus 207 ~e~~~C~ICLe~~~~~~~v~~lpC-gH~FH~~CI~~W 242 (274)
++..-|.||.++ ..++.+.| +-.||..|..+-
T Consensus 6 ee~pWC~ICneD----AtlrC~gCdgDLYC~rC~rE~ 38 (67)
T 2d8v_A 6 SGLPWCCICNED----ATLRCAGCDGDLYCARCFREG 38 (67)
T ss_dssp CCCSSCTTTCSC----CCEEETTTTSEEECSSHHHHH
T ss_pred cCCCeeEEeCCC----CeEEecCCCCceehHHHHHHH
Confidence 566789999998 45788889 889999997764
No 91
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=79.13 E-value=0.49 Score=34.83 Aligned_cols=53 Identities=19% Similarity=0.385 Sum_probs=33.6
Q ss_pred CCccccccccccc--ccCCeeEEeCCCCccChhhHHHHHhc--CCCCccccccccCC
Q 024005 207 EDELTCTVCLEQV--NVGEIVRSLPCLHQFHANCIDPWLRQ--QGTCPVCKLRAGSG 259 (274)
Q Consensus 207 ~e~~~C~ICLe~~--~~~~~v~~lpCgH~FH~~CI~~WL~~--~~tCPlCR~~i~~~ 259 (274)
+++..|.||...- ..++.+..-.|.-.||..|+..-+.- .=.||.|......+
T Consensus 23 ~~~~~C~vC~~~~s~~~~~ll~CD~C~~~fH~~Cl~p~~vP~g~W~C~~C~~~~~~~ 79 (88)
T 2l43_A 23 DEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQSRARP 79 (88)
T ss_dssp CCCCCCSSCCSSSSCSEEEEEECSSSCCCCCHHHHTCSSCCSSCCCCHHHHHHTTSC
T ss_pred CCCCcCCcCCCCCCCCCCCEEECCCCCchhhcccCCCCccCCCceECccccCccchh
Confidence 4567899998763 22223333348889999998753211 22599997755443
No 92
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=78.47 E-value=0.64 Score=34.85 Aligned_cols=47 Identities=19% Similarity=0.355 Sum_probs=32.4
Q ss_pred CCcccccccccccccCCeeEEeCCCCccChhhHHHHHhc---CCCCccccc
Q 024005 207 EDELTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQ---QGTCPVCKL 254 (274)
Q Consensus 207 ~e~~~C~ICLe~~~~~~~v~~lpCgH~FH~~CI~~WL~~---~~tCPlCR~ 254 (274)
++...| ||-.....+..+..-.|..-||..|+..=+.. .-.||.|+.
T Consensus 26 ~d~vrC-iC~~~~~~~~mi~Cd~C~~w~H~~C~~~~~~~~p~~w~C~~C~~ 75 (98)
T 2lv9_A 26 TDVTRC-ICGFTHDDGYMICCDKCSVWQHIDCMGIDRQHIPDTYLCERCQP 75 (98)
T ss_dssp CCBCCC-TTSCCSCSSCEEEBTTTCBEEETTTTTCCTTSCCSSBCCTTTSS
T ss_pred CCCEEe-ECCCccCCCcEEEcCCCCCcCcCcCCCCCccCCCCCEECCCCcC
Confidence 344567 89877666655555669999999998653222 236999964
No 93
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=77.15 E-value=0.49 Score=35.12 Aligned_cols=50 Identities=26% Similarity=0.518 Sum_probs=34.6
Q ss_pred CCcccccccccccccCCeeEEeCCCCccChhhHHHHHhcCC----CCccccccc
Q 024005 207 EDELTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQQG----TCPVCKLRA 256 (274)
Q Consensus 207 ~e~~~C~ICLe~~~~~~~v~~lpCgH~FH~~CI~~WL~~~~----tCPlCR~~i 256 (274)
.+...|.||...-..++.+..-.|...||..|+.+=|.... .||.|+...
T Consensus 14 ~~~~~C~vC~~~~~~~~ll~CD~C~~~~H~~Cl~Ppl~~~P~g~W~C~~C~~~~ 67 (92)
T 2e6r_A 14 IDSYICQVCSRGDEDDKLLFCDGCDDNYHIFCLLPPLPEIPRGIWRCPKCILAE 67 (92)
T ss_dssp CCCCCCSSSCCSGGGGGCEECTTTCCEECSSSSSSCCSSCCSSCCCCHHHHHHH
T ss_pred cCCCCCccCCCcCCCCCEEEcCCCCchhccccCCCCcccCCCCCcCCccCcCcc
Confidence 45668999988754444444555999999999975443322 599997643
No 94
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=75.56 E-value=1.3 Score=31.40 Aligned_cols=49 Identities=27% Similarity=0.624 Sum_probs=32.9
Q ss_pred CcccccccccccccCCeeEEeCCCCccChhhHHHH------H---hcCCCCcccccccc
Q 024005 208 DELTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPW------L---RQQGTCPVCKLRAG 257 (274)
Q Consensus 208 e~~~C~ICLe~~~~~~~v~~lpCgH~FH~~CI~~W------L---~~~~tCPlCR~~i~ 257 (274)
+..-| ||...+..+.-+..-.|..-||..|+.-- + ...-.||.|+..-.
T Consensus 15 ~~~~C-~C~~~~~~~~MI~Cd~C~~WfH~~Cvgl~~~~~~~l~~~~~~~~C~~C~~~~~ 72 (76)
T 1wem_A 15 NALYC-ICRQPHNNRFMICCDRCEEWFHGDCVGISEARGRLLERNGEDYICPNCTILSG 72 (76)
T ss_dssp TCCCS-TTCCCCCSSCEEECSSSCCEEEHHHHSCCHHHHHHHHHHTCCCCCHHHHHHSC
T ss_pred CCCEE-ECCCccCCCCEEEeCCCCCcEeCeEEccchhhhhhccCCCCeEECcCCcCccC
Confidence 44556 89888764445555569999999998421 1 24568999976543
No 95
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=74.11 E-value=0.71 Score=38.71 Aligned_cols=52 Identities=21% Similarity=0.455 Sum_probs=36.7
Q ss_pred ccccccccccccCC----eeEEeCCCCccChhhHHH------HHh-----cCCCCccccccccCCCC
Q 024005 210 LTCTVCLEQVNVGE----IVRSLPCLHQFHANCIDP------WLR-----QQGTCPVCKLRAGSGWH 261 (274)
Q Consensus 210 ~~C~ICLe~~~~~~----~v~~lpCgH~FH~~CI~~------WL~-----~~~tCPlCR~~i~~~~~ 261 (274)
..|+||...|..++ -+..-.|..-||..|+.- -+. ..-.||.|+..-+..|.
T Consensus 3 ~~CpiC~k~Y~~~~~~~~MIqCd~C~~W~H~~Cvgi~~~~~e~~~~~pe~~~y~Cp~C~~~~~~~~~ 69 (183)
T 3lqh_A 3 NFCPLCDKCYDDDDYESKMMQCGKCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTERHPAEWR 69 (183)
T ss_dssp CBCTTTCCBCTTCCTTCCEEECTTTCCEEEGGGSSCCHHHHHHHHHSHHHHCCCCTTTCCSSSCHHH
T ss_pred CcCCCCcCccCCcccCCCeEECCCCCcccchhccccCHHHHHHhhcCCCCCeeECcCCCCCCCHHHH
Confidence 36999999988775 344455999999999632 121 14689999887665543
No 96
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=73.95 E-value=0.95 Score=30.84 Aligned_cols=49 Identities=22% Similarity=0.406 Sum_probs=33.3
Q ss_pred CCcccccccccccccC-CeeEEeCCCCccChhhHHHHHh-----cCCCCcccccc
Q 024005 207 EDELTCTVCLEQVNVG-EIVRSLPCLHQFHANCIDPWLR-----QQGTCPVCKLR 255 (274)
Q Consensus 207 ~e~~~C~ICLe~~~~~-~~v~~lpCgH~FH~~CI~~WL~-----~~~tCPlCR~~ 255 (274)
++...|+||...+..+ .-+..-.|..-||..|+.--.. ..-.||.|+.+
T Consensus 4 ~e~~~C~~C~~~~~~~~~mI~Cd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~k 58 (64)
T 1we9_A 4 GSSGQCGACGESYAADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSNK 58 (64)
T ss_dssp SSCCCCSSSCCCCCSSSCEEECSSSCCEEETTTTTCCTTGGGGCSSCCCHHHHTT
T ss_pred CCCCCCCCCCCccCCCCCEEEccCCCCCCCccccCcChhHhcCCCcEECCCCcCc
Confidence 4566899999887533 3444455889999999754221 23469999764
No 97
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=73.00 E-value=12 Score=27.59 Aligned_cols=51 Identities=24% Similarity=0.445 Sum_probs=35.1
Q ss_pred CcccccccccccccCC---eeE-EeCCCCccChhhHHHHHh-cCCCCccccccccC
Q 024005 208 DELTCTVCLEQVNVGE---IVR-SLPCLHQFHANCIDPWLR-QQGTCPVCKLRAGS 258 (274)
Q Consensus 208 e~~~C~ICLe~~~~~~---~v~-~lpCgH~FH~~CI~~WL~-~~~tCPlCR~~i~~ 258 (274)
....|-||=+++.... ... .--|+--.|..|.+-=.+ .+..||-|+.....
T Consensus 15 ~~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG~q~CpqCktrYkr 70 (93)
T 1weo_A 15 DGQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQCKTRYKR 70 (93)
T ss_dssp SSCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTSCSSCTTTCCCCCC
T ss_pred CCCccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHhccCccccccCCcccc
Confidence 4568999999975332 211 223777789999876443 46789999998863
No 98
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=72.91 E-value=3.1 Score=33.35 Aligned_cols=46 Identities=26% Similarity=0.491 Sum_probs=33.7
Q ss_pred CCCcccccccccccccCCeeEEeCCCCccChhhHHHHHh---------c--CCCCccccc
Q 024005 206 TEDELTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLR---------Q--QGTCPVCKL 254 (274)
Q Consensus 206 ~~e~~~C~ICLe~~~~~~~v~~lpCgH~FH~~CI~~WL~---------~--~~tCPlCR~ 254 (274)
+..+..|.+|-+. |+.+..-.|-..||..||.+=+. . .=.||.|+.
T Consensus 60 Dg~~d~C~vC~~G---G~LlcCD~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~~ 116 (142)
T 2lbm_A 60 DGMDEQCRWCAEG---GNLICCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICHP 116 (142)
T ss_dssp TSCBCSCSSSCCC---SSEEECSSSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTCC
T ss_pred CCCCCeecccCCC---CcEEeCCCCCCeeeHhhcCCCCChhhhhhcccCCCCCEeecccC
Confidence 3456789999876 66555556999999999997552 1 226999974
No 99
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=72.78 E-value=1.4 Score=36.93 Aligned_cols=44 Identities=30% Similarity=0.697 Sum_probs=31.6
Q ss_pred ccccccccccccCCeeEEeCCCCccChhhHHHHHhcC----CCCccccccc
Q 024005 210 LTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQQ----GTCPVCKLRA 256 (274)
Q Consensus 210 ~~C~ICLe~~~~~~~v~~lpCgH~FH~~CI~~WL~~~----~tCPlCR~~i 256 (274)
..|.+|.+. ++.+..-.|...||..|+.+=+... -.||.|+...
T Consensus 3 ~~C~~C~~~---g~ll~Cd~C~~~~H~~Cl~p~l~~~p~g~W~C~~C~~~~ 50 (189)
T 2ro1_A 3 TICRVCQKP---GDLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVLP 50 (189)
T ss_dssp CCBTTTCCC---SSCCCCTTTCCBCCSTTSTTCCSSCCCTTCCTTTTSCSC
T ss_pred CcCccCCCC---CceeECCCCCchhccccCCCCcccCCCCCCCCcCccCCC
Confidence 479999855 5555555588999999997655432 2599998654
No 100
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=72.78 E-value=0.57 Score=32.20 Aligned_cols=51 Identities=24% Similarity=0.540 Sum_probs=34.0
Q ss_pred Cccccccccccccc--CCeeEEeCCCCccChhhHHHHHh-------cCCCCccccccccC
Q 024005 208 DELTCTVCLEQVNV--GEIVRSLPCLHQFHANCIDPWLR-------QQGTCPVCKLRAGS 258 (274)
Q Consensus 208 e~~~C~ICLe~~~~--~~~v~~lpCgH~FH~~CI~~WL~-------~~~tCPlCR~~i~~ 258 (274)
++..|.||...... ++.+..-.|...||..|+.+-+. ..=.||.|+.....
T Consensus 5 ~~~~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~~p~l~~~~~~p~~~W~C~~C~~~~~~ 64 (66)
T 2yt5_A 5 SSGVCTICQEEYSEAPNEMVICDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVFATTT 64 (66)
T ss_dssp CCCCBSSSCCCCCBTTBCEEECSSSCCEEETTTSSSCCCHHHHHSSCCCCCHHHHHTTSC
T ss_pred CCCCCCCCCCCCCCCCCCEEECCCCChHHHhhhCCCcccccccCCCCCEECCCCcCcccc
Confidence 56689999987432 34444455999999999886432 12369999765443
No 101
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=71.32 E-value=4.4 Score=30.73 Aligned_cols=45 Identities=22% Similarity=0.516 Sum_probs=28.8
Q ss_pred ccccccccccc------ccCCeeEEeCCCCccChhhHHH------HHhc-CCCCcccc
Q 024005 209 ELTCTVCLEQV------NVGEIVRSLPCLHQFHANCIDP------WLRQ-QGTCPVCK 253 (274)
Q Consensus 209 ~~~C~ICLe~~------~~~~~v~~lpCgH~FH~~CI~~------WL~~-~~tCPlCR 253 (274)
...|.+|+..- ..++.+..-.|+..||..|+.. .+.. .=.||.|+
T Consensus 5 ~~~C~~C~~~~~~~~~g~~~~Ll~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~ 62 (112)
T 3v43_A 5 IPICSFCLGTKEQNREKKPEELISCADCGNSGHPSCLKFSPELTVRVKALRWQCIECK 62 (112)
T ss_dssp CSSBTTTCCCTTCCTTSCCCCCEECTTTCCEECHHHHTCCHHHHHHHHTSCCCCTTTC
T ss_pred CccccccCCchhhCcCCCchhceEhhhcCCCCCCchhcCCHHHHHHhhccccccccCC
Confidence 44799998763 2234555566999999999952 2222 33577774
No 102
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=69.70 E-value=2.6 Score=29.64 Aligned_cols=46 Identities=28% Similarity=0.697 Sum_probs=29.1
Q ss_pred CcccccccccccccCCeeEEeC--CC-CccChhhHHHHHhcC----CCCcccccccc
Q 024005 208 DELTCTVCLEQVNVGEIVRSLP--CL-HQFHANCIDPWLRQQ----GTCPVCKLRAG 257 (274)
Q Consensus 208 e~~~C~ICLe~~~~~~~v~~lp--Cg-H~FH~~CI~~WL~~~----~tCPlCR~~i~ 257 (274)
+..-| ||..... ++-+..=. |. .-||..|+. |... -.||.|+..-.
T Consensus 15 ~~~~C-~C~~~~~-g~MI~CD~~~C~~~wfH~~Cvg--l~~~p~g~w~Cp~C~~~~~ 67 (71)
T 1wen_A 15 EPTYC-LCHQVSY-GEMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQESG 67 (71)
T ss_dssp SCCCS-TTCCCSC-SSEECCSCSSCSCCCEETTTTT--CSSCCSSCCCCTTTSSCSS
T ss_pred CCCEE-ECCCCCC-CCEeEeeCCCCCCccEecccCC--cCcCCCCCEECCCCCcccc
Confidence 45567 8987643 44433334 55 689999986 4332 36999976543
No 103
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=67.57 E-value=0.51 Score=34.69 Aligned_cols=54 Identities=22% Similarity=0.480 Sum_probs=35.8
Q ss_pred CCccccccccccccc--CCeeEEeCCCCccChhhHHHHHhc--------CCCCccccccccCCC
Q 024005 207 EDELTCTVCLEQVNV--GEIVRSLPCLHQFHANCIDPWLRQ--------QGTCPVCKLRAGSGW 260 (274)
Q Consensus 207 ~e~~~C~ICLe~~~~--~~~v~~lpCgH~FH~~CI~~WL~~--------~~tCPlCR~~i~~~~ 260 (274)
+++..|.||...-.. ++.+..=.|...||..|+.+-|.. .=.|+.|+.......
T Consensus 14 e~~~~C~vC~~~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~~~~~p~g~W~C~~C~~~~~~~~ 77 (88)
T 1wev_A 14 EMGLACVVCRQMTVASGNQLVECQECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCTRQMKRMA 77 (88)
T ss_dssp HHCCSCSSSCCCCCCTTCCEEECSSSCCEEETTTSSSCCCHHHHHCTTCCCCCHHHHHHHCCST
T ss_pred CCCCcCCCCCCCCCCCCCceEECCCCCCeEcCccCCCcccccccCCCCCCeeCccccchhhhhc
Confidence 356689999976432 233333448999999999875531 226999977655433
No 104
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=67.21 E-value=8.6 Score=27.92 Aligned_cols=38 Identities=29% Similarity=0.554 Sum_probs=28.9
Q ss_pred CcccccccccccccCCeeEEeC--CCCccChhhHHHHHhcC
Q 024005 208 DELTCTVCLEQVNVGEIVRSLP--CLHQFHANCIDPWLRQQ 246 (274)
Q Consensus 208 e~~~C~ICLe~~~~~~~v~~lp--CgH~FH~~CI~~WL~~~ 246 (274)
....|.+|.+.++...-+ .-| =.|.||..|-+..++++
T Consensus 14 a~l~CtlC~erLEdtHFV-QCPsv~~HkFCFpCsr~sIk~q 53 (93)
T 2cs3_A 14 GPLCCTICHERLEDTHFV-QCPSVPSHKFCFPCSRESIKAQ 53 (93)
T ss_dssp CSCCCSSSCSCCSSTTSE-ECSSCSSCEECHHHHHHHHHHH
T ss_pred CeeEeecchhhhccCcee-eCCCccCCeeeccccHHHHHhc
Confidence 567899999999866332 223 37999999999998763
No 105
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=64.75 E-value=1.6 Score=33.23 Aligned_cols=45 Identities=29% Similarity=0.647 Sum_probs=29.9
Q ss_pred ccccccccccc-cCCeeEEeCCCCccChhhHHHHHhcC----CCCccccc
Q 024005 210 LTCTVCLEQVN-VGEIVRSLPCLHQFHANCIDPWLRQQ----GTCPVCKL 254 (274)
Q Consensus 210 ~~C~ICLe~~~-~~~~v~~lpCgH~FH~~CI~~WL~~~----~tCPlCR~ 254 (274)
..|.||.+.-. .++.+..-.|...||..|+.+-|... =.||.|+.
T Consensus 62 ~~C~vC~~~~~~~~~ll~Cd~C~~~yH~~Cl~p~l~~~P~~~W~C~~C~~ 111 (112)
T 3v43_A 62 KTCSSCRDQGKNADNMLFCDSCDRGFHMECCDPPLTRMPKGMWICQICRP 111 (112)
T ss_dssp CCBTTTCCCCCTTCCCEECTTTCCEECGGGCSSCCSSCCSSCCCCTTTSC
T ss_pred CccccccCcCCCccceEEcCCCCCeeecccCCCCCCCCCCCCeECCCCCC
Confidence 36889986532 23333444489999999997755442 25999975
No 106
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=61.86 E-value=1.2 Score=34.81 Aligned_cols=49 Identities=18% Similarity=0.327 Sum_probs=32.0
Q ss_pred CcccccccccccccCC-eeEEeCCCCccChhhHHHHHhcCCCCccccccc
Q 024005 208 DELTCTVCLEQVNVGE-IVRSLPCLHQFHANCIDPWLRQQGTCPVCKLRA 256 (274)
Q Consensus 208 e~~~C~ICLe~~~~~~-~v~~lpCgH~FH~~CI~~WL~~~~tCPlCR~~i 256 (274)
+...|..|...|..-. ....-.||.+||..|..........|-.|-..+
T Consensus 18 ~~~~C~~C~~~Fs~~~RkHHCR~CG~ifC~~Cs~~~~~~vRVC~~C~~~~ 67 (120)
T 1y02_A 18 LEPSCKSCGAHFANTARKQTCLDCKKNFCMTCSSQVGNGPRLCLLCQRFR 67 (120)
T ss_dssp --CCCTTTCCCCSSGGGCEECTTTCCEECGGGEEC----CCEEHHHHHHH
T ss_pred ccCcccCcCCccccccccccCCCCCCeeCHHHhCCCCCCceECHHHHHHH
Confidence 4458999999987442 334456999999999776655566788885543
No 107
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=61.81 E-value=6.5 Score=36.41 Aligned_cols=47 Identities=23% Similarity=0.390 Sum_probs=30.5
Q ss_pred cccccccccccccCCeeEEeCCCCccC--hhhHHHHHhcC--CCCcccccccc
Q 024005 209 ELTCTVCLEQVNVGEIVRSLPCLHQFH--ANCIDPWLRQQ--GTCPVCKLRAG 257 (274)
Q Consensus 209 ~~~C~ICLe~~~~~~~v~~lpCgH~FH--~~CI~~WL~~~--~tCPlCR~~i~ 257 (274)
...|+|-...+. ..++...|.|.-| ..-+.....+. -.||+|.+.+.
T Consensus 249 SL~CPlS~~ri~--~PvRg~~C~HlQCFDl~sfL~~~~~~~~W~CPIC~k~~~ 299 (371)
T 3i2d_A 249 SLQCPISYTRMK--YPSKSINCKHLQCFDALWFLHSQLQIPTWQCPVCQIDIA 299 (371)
T ss_dssp ESBCTTTSSBCS--SEEEETTCCSSCCEEHHHHHHHHHHSCCCBCTTTCCBCC
T ss_pred eecCCCcccccc--ccCcCCcCCCcceECHHHHHHHhhcCCceeCCCCCcccC
Confidence 468998877776 4567788999744 33333332333 36999988763
No 108
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=61.39 E-value=6.1 Score=28.40 Aligned_cols=36 Identities=17% Similarity=0.207 Sum_probs=26.3
Q ss_pred CCcccccccccccccCC-eeEEeCCCCccChhhHHHH
Q 024005 207 EDELTCTVCLEQVNVGE-IVRSLPCLHQFHANCIDPW 242 (274)
Q Consensus 207 ~e~~~C~ICLe~~~~~~-~v~~lpCgH~FH~~CI~~W 242 (274)
.+...|.+|...|..-. ....-.||++||..|....
T Consensus 19 ~~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~~ 55 (84)
T 1z2q_A 19 EDAPACNGCGCVFTTTVRRHHCRNCGYVLCGDCSRHR 55 (84)
T ss_dssp TTCCBCTTTCCBCCTTSCCEECTTTCCEECTGGGCCE
T ss_pred CCCCCCcCcCCccccchhcccccCCCcEEChHHhCCe
Confidence 45668999999997543 2333459999999996553
No 109
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=60.45 E-value=5.9 Score=28.35 Aligned_cols=52 Identities=17% Similarity=0.382 Sum_probs=32.7
Q ss_pred CCcccccccccccccCC-eeEEeCCCCccChhhHHHHHh------cCCCCccccccccC
Q 024005 207 EDELTCTVCLEQVNVGE-IVRSLPCLHQFHANCIDPWLR------QQGTCPVCKLRAGS 258 (274)
Q Consensus 207 ~e~~~C~ICLe~~~~~~-~v~~lpCgH~FH~~CI~~WL~------~~~tCPlCR~~i~~ 258 (274)
.+...|.+|...|..-. ....-.||.+||..|....+. ....|-.|-..+..
T Consensus 17 ~~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~~~~l~~~~~~~RVC~~C~~~l~~ 75 (82)
T 2yw8_A 17 DEATHCRQCEKEFSISRRKHHCRNCGHIFCNTCSSNELALPSYPKPVRVCDSCHTLLLQ 75 (82)
T ss_dssp CCCCBCTTTCCBCBTTBCCEECTTTCCEECSGGGCEEECCTTCSSCEEECHHHHHHTTC
T ss_pred ccCCcccCcCCcccCccccccCCCCCCEEChHHhCCeeecCCCCCcCEECHHHHHHHHH
Confidence 34568999999997543 233345999999999754321 11246666554443
No 110
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=60.33 E-value=5.8 Score=30.18 Aligned_cols=48 Identities=29% Similarity=0.525 Sum_probs=30.8
Q ss_pred CCCcccccccccccccCCeeEEe--CCCCccChhhHHHHHhcCC----CCccccccccC
Q 024005 206 TEDELTCTVCLEQVNVGEIVRSL--PCLHQFHANCIDPWLRQQG----TCPVCKLRAGS 258 (274)
Q Consensus 206 ~~e~~~C~ICLe~~~~~~~v~~l--pCgH~FH~~CI~~WL~~~~----tCPlCR~~i~~ 258 (274)
.+++..|.+|.+. ++.+..- .|-..||..|+. |.... .||.|+-.+..
T Consensus 12 ~~~~~~C~~C~~~---G~ll~CD~~~Cp~~fH~~Cl~--L~~~P~g~W~Cp~c~C~~C~ 65 (107)
T 4gne_A 12 QMHEDYCFQCGDG---GELVMCDKKDCPKAYHLLCLN--LTQPPYGKWECPWHQCDECS 65 (107)
T ss_dssp CSSCSSCTTTCCC---SEEEECCSTTCCCEECTGGGT--CSSCCSSCCCCGGGBCTTTC
T ss_pred CCCCCCCCcCCCC---CcEeEECCCCCCcccccccCc--CCcCCCCCEECCCCCCCcCC
Confidence 3466789999842 4444443 487899999987 54322 48877654443
No 111
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=59.80 E-value=5.7 Score=30.91 Aligned_cols=34 Identities=21% Similarity=0.369 Sum_probs=24.7
Q ss_pred CcccccccccccccCC-eeEEeCCCCccChhhHHH
Q 024005 208 DELTCTVCLEQVNVGE-IVRSLPCLHQFHANCIDP 241 (274)
Q Consensus 208 e~~~C~ICLe~~~~~~-~v~~lpCgH~FH~~CI~~ 241 (274)
+...|.+|...|..-. ....-.||++||..|...
T Consensus 68 ~~~~C~~C~~~Fs~~~RrHHCR~CG~vfC~~Cs~~ 102 (125)
T 1joc_A 68 EVQNCMACGKGFSVTVRRHHCRQCGNIFCAECSAK 102 (125)
T ss_dssp GCCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCE
T ss_pred CCCCCcCcCCccccccccccCCCCCeEEChHHhCC
Confidence 4458999999987543 233455999999999544
No 112
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=59.35 E-value=7.8 Score=35.74 Aligned_cols=47 Identities=26% Similarity=0.480 Sum_probs=30.9
Q ss_pred cccccccccccccCCeeEEeCCCCc--cChhhHHHHHhcC--CCCcccccccc
Q 024005 209 ELTCTVCLEQVNVGEIVRSLPCLHQ--FHANCIDPWLRQQ--GTCPVCKLRAG 257 (274)
Q Consensus 209 ~~~C~ICLe~~~~~~~v~~lpCgH~--FH~~CI~~WL~~~--~tCPlCR~~i~ 257 (274)
...|+|=...+. ..++...|.|. |-..-+-....+. -.||+|.+.+.
T Consensus 215 SL~CPlS~~ri~--~P~Rg~~C~HlqCFDl~sfL~~~~~~~~W~CPiC~k~~~ 265 (360)
T 4fo9_A 215 SLMCPLGKMRLT--IPCRAVTCTHLQCFDAALYLQMNEKKPTWICPVCDKKAA 265 (360)
T ss_dssp ESBCTTTCSBCS--SEEEETTCCCCCCEEHHHHHHHHHHSCCCBCTTTCSBCC
T ss_pred eeeCCCccceec--cCCcCCCCCCCccCCHHHHHHHHhhCCCeECCCCCcccC
Confidence 457998877776 44677779997 4443333333333 36999998775
No 113
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=58.94 E-value=6.4 Score=28.75 Aligned_cols=50 Identities=16% Similarity=0.358 Sum_probs=33.0
Q ss_pred CcccccccccccccCC-eeEEeCCCCccChhhHHHHHh------cCCCCcccccccc
Q 024005 208 DELTCTVCLEQVNVGE-IVRSLPCLHQFHANCIDPWLR------QQGTCPVCKLRAG 257 (274)
Q Consensus 208 e~~~C~ICLe~~~~~~-~v~~lpCgH~FH~~CI~~WL~------~~~tCPlCR~~i~ 257 (274)
+...|.+|...|..-. ....-.||++||..|...+.. ....|-.|-..+.
T Consensus 19 ~~~~C~~C~~~F~~~~RrhhCr~CG~v~C~~Cs~~~~~l~~~~~~~RVC~~C~~~l~ 75 (90)
T 3t7l_A 19 EAPNCMNCQVKFTFTKRRHHCRACGKVFCGVCCNRKCKLQYLEKEARVCVVCYETIS 75 (90)
T ss_dssp GCCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEEEEETTTTEEEEECHHHHHHHH
T ss_pred cCCcCcCCCCcccchhhCccccCCCCEECCcccCCeeecCCCCCCCeECHHHHHHHH
Confidence 4568999999987543 333455999999999765431 1234666655443
No 114
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}
Probab=58.88 E-value=1.4 Score=31.61 Aligned_cols=44 Identities=27% Similarity=0.597 Sum_probs=28.8
Q ss_pred cccccccccccCCeeEEeCCCCccChhhHHHHHhcC-----CCCccccc
Q 024005 211 TCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQQ-----GTCPVCKL 254 (274)
Q Consensus 211 ~C~ICLe~~~~~~~v~~lpCgH~FH~~CI~~WL~~~-----~tCPlCR~ 254 (274)
.|.||...-..++.+..-.|...||..|+.+-|... =.||.|+.
T Consensus 28 ~C~vC~~~~d~~~ll~CD~C~~~yH~~Cl~PpL~~~P~g~~W~C~~C~~ 76 (77)
T 3shb_A 28 ACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 76 (77)
T ss_dssp SBTTTCCCSCGGGEEECTTTCCEEETTTSSSCCSSCCSSSCCCCTTTC-
T ss_pred cCCccCCCCCCcceeEeCCCCCccCcccCCCcccCCCCCCceECcCccc
Confidence 677777664444344444488999999998765432 25888865
No 115
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=58.77 E-value=6.8 Score=28.12 Aligned_cols=35 Identities=20% Similarity=0.304 Sum_probs=25.2
Q ss_pred CCcccccccccccccCC-eeEEeCCCCccChhhHHH
Q 024005 207 EDELTCTVCLEQVNVGE-IVRSLPCLHQFHANCIDP 241 (274)
Q Consensus 207 ~e~~~C~ICLe~~~~~~-~v~~lpCgH~FH~~CI~~ 241 (274)
.+...|.+|...|..-. ....-.||.+||..|...
T Consensus 12 ~~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~ 47 (84)
T 1x4u_A 12 NNFGNCTGCSATFSVLKKRRSCSNCGNSFCSRCCSF 47 (84)
T ss_dssp CCCSSCSSSCCCCCSSSCCEECSSSCCEECTTTSCE
T ss_pred CCCCcCcCcCCccccchhhhhhcCCCcEEChhhcCC
Confidence 34568999999986443 233455999999999543
No 116
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=57.70 E-value=2.9 Score=36.12 Aligned_cols=46 Identities=26% Similarity=0.570 Sum_probs=28.4
Q ss_pred cccccccccccccCCeeEEeCCCCccChhhHHHHHhc-----CCCCccccc
Q 024005 209 ELTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQ-----QGTCPVCKL 254 (274)
Q Consensus 209 ~~~C~ICLe~~~~~~~v~~lpCgH~FH~~CI~~WL~~-----~~tCPlCR~ 254 (274)
+..|.+|...-..++.+..-.|...||..|+.+=|.. .=.||.|+.
T Consensus 174 ~c~C~vC~~~~~~~~lL~CD~C~~~yH~~CL~PPL~~vP~G~~W~Cp~C~~ 224 (226)
T 3ask_A 174 VCACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 224 (226)
T ss_dssp TTSCSSSCCCCC--CCEECSSSCCEECSCC--CCCCSCCSSSCCCCGGGC-
T ss_pred CCCCcCCCCCCCCCCeEEcCCCCcceeCccCCCCcccCCCCCCCCCcCCcC
Confidence 4479999875444445555559999999999864433 125999965
No 117
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=55.40 E-value=7.4 Score=29.57 Aligned_cols=33 Identities=27% Similarity=0.473 Sum_probs=23.2
Q ss_pred ccccccccccc-------cCCeeEEeCCCCccChhhHHHH
Q 024005 210 LTCTVCLEQVN-------VGEIVRSLPCLHQFHANCIDPW 242 (274)
Q Consensus 210 ~~C~ICLe~~~-------~~~~v~~lpCgH~FH~~CI~~W 242 (274)
..|.||+..-. .++.+....|+..||..|+..+
T Consensus 2 ~~C~~C~~~~~~n~k~g~~~~Li~C~~C~~~~H~~Cl~~~ 41 (114)
T 2kwj_A 2 SYCDFCLGGSNMNKKSGRPEELVSCADCGRSGHPTCLQFT 41 (114)
T ss_dssp CCCSSSCCBTTBCTTTCCCCCCEECSSSCCEECTTTTTCC
T ss_pred CcCccCCCCccccccCCCCCCCeEeCCCCCccchhhCCCh
Confidence 36999987641 1234555669999999998754
No 118
>2o35_A Hypothetical protein DUF1244; helix bundle, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.12A {Sinorhizobium meliloti} SCOP: a.293.1.1
Probab=55.31 E-value=4.6 Score=30.40 Aligned_cols=12 Identities=42% Similarity=1.204 Sum_probs=10.8
Q ss_pred cChhhHHHHHhc
Q 024005 234 FHANCIDPWLRQ 245 (274)
Q Consensus 234 FH~~CI~~WL~~ 245 (274)
||.+|+.+|++-
T Consensus 43 FCRNCLskWy~~ 54 (105)
T 2o35_A 43 FCRNCLSNWYRE 54 (105)
T ss_dssp CCHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999999863
No 119
>3fyb_A Protein of unknown function (DUF1244); hydrocar degrading, structural genomics, PSI-2; HET: PEG; 1.80A {Alcanivorax borkumensis SK2}
Probab=55.17 E-value=4.7 Score=30.33 Aligned_cols=11 Identities=45% Similarity=1.174 Sum_probs=10.4
Q ss_pred cChhhHHHHHh
Q 024005 234 FHANCIDPWLR 244 (274)
Q Consensus 234 FH~~CI~~WL~ 244 (274)
||.+|+.+|++
T Consensus 42 FCRNCLskWy~ 52 (104)
T 3fyb_A 42 FCRNCLAKWLM 52 (104)
T ss_dssp CCHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999999986
No 120
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=55.14 E-value=9.9 Score=29.88 Aligned_cols=45 Identities=27% Similarity=0.496 Sum_probs=30.9
Q ss_pred CCcccccccccccccCCeeEEeCCCCccChhhHHHHH-----hc------CCCCccccc
Q 024005 207 EDELTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWL-----RQ------QGTCPVCKL 254 (274)
Q Consensus 207 ~e~~~C~ICLe~~~~~~~v~~lpCgH~FH~~CI~~WL-----~~------~~tCPlCR~ 254 (274)
..+..|.||-+. ++.+..=.|-..||..||.+=+ .. .=.|+.|+-
T Consensus 55 g~~~~C~vC~dG---G~LlcCd~Cpr~Fc~~Cl~~~lg~~~l~~i~~~~~~W~C~~C~~ 110 (129)
T 3ql9_A 55 GMDEQCRWCAEG---GNLICCDFCHNAFCKKCILRNLGRRELSTIMDENNQWYCYICHP 110 (129)
T ss_dssp SCBSSCTTTCCC---SEEEECSSSSCEEEHHHHHHHTCHHHHHHHTCTTSCCCCTTTCC
T ss_pred CCCCcCeecCCC---CeeEecCCCchhhhHHHhCCCcchhHHHHhccCCCCeEcCCcCC
Confidence 345679999876 5444444589999999999742 11 126999954
No 121
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=54.94 E-value=10 Score=26.73 Aligned_cols=48 Identities=21% Similarity=0.423 Sum_probs=31.4
Q ss_pred Ccccccccccccc-cCCeeEEeCCCCccChhhHHHHHh-----cCCCCccccccc
Q 024005 208 DELTCTVCLEQVN-VGEIVRSLPCLHQFHANCIDPWLR-----QQGTCPVCKLRA 256 (274)
Q Consensus 208 e~~~C~ICLe~~~-~~~~v~~lpCgH~FH~~CI~~WL~-----~~~tCPlCR~~i 256 (274)
+..-| ||...+. .+.-+..-.|..-||..|+.---. ..-.||.|+..-
T Consensus 11 ~~~~C-~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~~ 64 (79)
T 1wep_A 11 VPVYC-LCRQPYNVNHFMIECGLCQDWFHGSCVGIEEENAVDIDIYHCPDCEAVF 64 (79)
T ss_dssp CCCCS-TTSCSCCSSSCEEEBTTTCCEEEHHHHTCCHHHHTTCSBBCCTTTTTTS
T ss_pred CccEE-EcCCccCCCCceEEcCCCCCcEEeeecCcccccccCCCeEECCCccccc
Confidence 34456 9988875 334444555899999999852211 244799998654
No 122
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=54.11 E-value=2.6 Score=30.17 Aligned_cols=46 Identities=26% Similarity=0.543 Sum_probs=30.7
Q ss_pred cccccccccccccCCeeEEeCCCCccChhhHHHHHhc-----CCCCccccc
Q 024005 209 ELTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQ-----QGTCPVCKL 254 (274)
Q Consensus 209 ~~~C~ICLe~~~~~~~v~~lpCgH~FH~~CI~~WL~~-----~~tCPlCR~ 254 (274)
+..|.||...-..++.+..-.|...||..|+.+=|.. .=.||.|+.
T Consensus 26 ~c~C~vC~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 76 (77)
T 2e6s_A 26 SCSCRVCGGKHEPNMQLLCDECNVAYHIYCLNPPLDKVPEEEYWYCPSCKT 76 (77)
T ss_dssp SSSCSSSCCCCCSTTEEECSSSCCEEETTSSSSCCSSCCCSSCCCCTTTCC
T ss_pred CCCCcCcCCcCCCCCEEEcCCCCccccccccCCCccCCCCCCCcCCcCccC
Confidence 3378999875444555545558999999999854432 125888854
No 123
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=53.93 E-value=10 Score=26.53 Aligned_cols=48 Identities=21% Similarity=0.440 Sum_probs=31.0
Q ss_pred CCccccccccccc--ccCCeeEEeCCCCccChhhHHHHHhc--CCCCccccc
Q 024005 207 EDELTCTVCLEQV--NVGEIVRSLPCLHQFHANCIDPWLRQ--QGTCPVCKL 254 (274)
Q Consensus 207 ~e~~~C~ICLe~~--~~~~~v~~lpCgH~FH~~CI~~WL~~--~~tCPlCR~ 254 (274)
.++..|.||.+.- ..++.+..-.|.-.||..|+..-..- .=.||.|+.
T Consensus 14 ~~~~~C~vC~~~~s~~~~~ll~CD~C~~~~H~~Cl~~~~vP~g~W~C~~C~~ 65 (71)
T 2ku3_A 14 DEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQ 65 (71)
T ss_dssp CSSCSCSSSCCCCCCSSSCEEECSSSCCEEEHHHHTCSSCCSSCCCCHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCEEECCCCCCccccccCCCCcCCCCCcCCccCcC
Confidence 4667899998763 23333444448999999998753211 125888865
No 124
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=52.63 E-value=2.7 Score=34.22 Aligned_cols=48 Identities=19% Similarity=0.517 Sum_probs=31.5
Q ss_pred CCccccccccccccc-CCeeEEeCCCCccChhhHHHHH-----hcCCCCcccccc
Q 024005 207 EDELTCTVCLEQVNV-GEIVRSLPCLHQFHANCIDPWL-----RQQGTCPVCKLR 255 (274)
Q Consensus 207 ~e~~~C~ICLe~~~~-~~~v~~lpCgH~FH~~CI~~WL-----~~~~tCPlCR~~ 255 (274)
++..-| +|...... +.-+..-.|..-||..|+.--- ...-.||.|+..
T Consensus 6 ~~~~~C-~C~~~~~~~~~mi~Cd~C~~WfH~~Cv~~~~~~~~~~~~~~C~~C~~~ 59 (174)
T 2ri7_A 6 DTKLYC-ICKTPEDESKFYIGCDRCQNWYHGRCVGILQSEAELIDEYVCPQCQST 59 (174)
T ss_dssp -CCEET-TTTEECCTTSCEEECTTTCCEEEHHHHTCCHHHHTTCSSCCCHHHHHH
T ss_pred CCCcEe-eCCCCCCCCCCEeECCCCCchhChhhcCCchhhccCccCeecCCCcch
Confidence 355678 99887653 3344455589999999985211 124479999764
No 125
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=52.61 E-value=1.1 Score=34.36 Aligned_cols=49 Identities=18% Similarity=0.462 Sum_probs=33.3
Q ss_pred ccccccccccccCCeeEEeCCCCccChhhHHHHHhcCC----CCccccccccC
Q 024005 210 LTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQQG----TCPVCKLRAGS 258 (274)
Q Consensus 210 ~~C~ICLe~~~~~~~v~~lpCgH~FH~~CI~~WL~~~~----tCPlCR~~i~~ 258 (274)
..|.||...-..++.+..-.|...||..|+.+=|.... .||.|+..+..
T Consensus 59 ~~C~~C~~~~~~~~ll~Cd~C~~~yH~~Cl~ppl~~~P~g~W~C~~C~~~~~~ 111 (114)
T 2kwj_A 59 KSCILCGTSENDDQLLFCDDCDRGYHMYCLNPPVAEPPEGSWSCHLCWELLKE 111 (114)
T ss_dssp CCCTTTTCCTTTTTEEECSSSCCEEETTTSSSCCSSCCSSCCCCHHHHHHHHH
T ss_pred CccCcccccCCCCceEEcCCCCccccccccCCCccCCCCCCeECccccchhhc
Confidence 36888887655455555556999999999986443322 49988765544
No 126
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=51.51 E-value=9.6 Score=26.14 Aligned_cols=34 Identities=24% Similarity=0.577 Sum_probs=23.4
Q ss_pred CCcccccccccccccCC-eeEEe-CCCCccChhhHH
Q 024005 207 EDELTCTVCLEQVNVGE-IVRSL-PCLHQFHANCID 240 (274)
Q Consensus 207 ~e~~~C~ICLe~~~~~~-~v~~l-pCgH~FH~~CI~ 240 (274)
+....|.+|...+..++ -+..- .|..-||..|+.
T Consensus 6 ~~~~~C~~C~~p~~~~~~mI~CD~~C~~WfH~~Cvg 41 (65)
T 2vpb_A 6 DPVYPCGICTNEVNDDQDAILCEASCQKWFHRICTG 41 (65)
T ss_dssp ---CBCTTTCSBCCTTSCEEEBTTTTCCEEEHHHHT
T ss_pred CCcCcCccCCCccCCCCCeEecccCccccCchhccC
Confidence 35568999999887554 33444 688999999963
No 127
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=51.40 E-value=2.7 Score=29.42 Aligned_cols=44 Identities=27% Similarity=0.621 Sum_probs=28.5
Q ss_pred cccccccccccCCeeEEeCCCCccChhhHHHHHhc-----CCCCccccc
Q 024005 211 TCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQ-----QGTCPVCKL 254 (274)
Q Consensus 211 ~C~ICLe~~~~~~~v~~lpCgH~FH~~CI~~WL~~-----~~tCPlCR~ 254 (274)
.|.||...-..++.+..-.|...||..|+.+=|.. .=.||.|+.
T Consensus 20 ~C~~C~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 68 (70)
T 3asl_A 20 ACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 68 (70)
T ss_dssp SBTTTCCCSCGGGEEECTTTCCEEEGGGSSSCCSSCCSSSCCCCTTTSC
T ss_pred CCcCCCCcCCCCCEEEcCCCCCceecccCCCCcCCCCCCCCcCCcCccC
Confidence 67788765444444444448899999999864433 225888864
No 128
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=50.73 E-value=8.4 Score=27.48 Aligned_cols=40 Identities=18% Similarity=0.394 Sum_probs=29.0
Q ss_pred CcccccccccccccCCeeEEeCCCCccChhhHHHHHhcCCCCccccccccC
Q 024005 208 DELTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQQGTCPVCKLRAGS 258 (274)
Q Consensus 208 e~~~C~ICLe~~~~~~~v~~lpCgH~FH~~CI~~WL~~~~tCPlCR~~i~~ 258 (274)
....|..|-..+. ++.+ ..-+..||.+| ..|-.|+..+..
T Consensus 24 ~~~~C~~C~~~I~-~~~v--~a~~~~~H~~C--------F~C~~C~~~L~~ 63 (90)
T 2dar_A 24 RTPMCAHCNQVIR-GPFL--VALGKSWHPEE--------FNCAHCKNTMAY 63 (90)
T ss_dssp CCCBBSSSCCBCC-SCEE--EETTEEECTTT--------CBCSSSCCBCSS
T ss_pred CCCCCccCCCEec-ceEE--EECCccccccC--------CccCCCCCCCCC
Confidence 4568999999885 4333 33578899888 368899888864
No 129
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}
Probab=50.68 E-value=2.5 Score=31.96 Aligned_cols=48 Identities=23% Similarity=0.481 Sum_probs=31.6
Q ss_pred ccccccccccccCC-eeEEe-CCCCccChhhHHHH------Hh----cCCCCcccccccc
Q 024005 210 LTCTVCLEQVNVGE-IVRSL-PCLHQFHANCIDPW------LR----QQGTCPVCKLRAG 257 (274)
Q Consensus 210 ~~C~ICLe~~~~~~-~v~~l-pCgH~FH~~CI~~W------L~----~~~tCPlCR~~i~ 257 (274)
..|.||...+.... -+..- .|..-||..|+.-- +. .+-.||.|+..-.
T Consensus 4 ~~C~iC~~p~~~~~~mi~Cdd~C~~WfH~~CVglt~~~~~~i~~~~~~~~~Cp~C~~~~~ 63 (105)
T 2xb1_A 4 YPCGACRSEVNDDQDAILCEASCQKWFHRECTGMTESAYGLLTTEASAVWACDLCLKTKE 63 (105)
T ss_dssp CBCTTTCSBCCTTSCEEECTTTTCCEEEGGGTTCCHHHHHHHHHCTTEEECCHHHHHTTT
T ss_pred CCCCCCCCccCCCCCEEEecCCcccccccccCCcCHHHHHhhccCCCCCEECccccCcCC
Confidence 46999999986543 33333 58889999997421 10 2347999977544
No 130
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=49.76 E-value=12 Score=27.20 Aligned_cols=52 Identities=21% Similarity=0.328 Sum_probs=34.8
Q ss_pred CcccccccccccccCC-eeEEeCCCCccChhhHHHHH-------hcCCCCccccccccCC
Q 024005 208 DELTCTVCLEQVNVGE-IVRSLPCLHQFHANCIDPWL-------RQQGTCPVCKLRAGSG 259 (274)
Q Consensus 208 e~~~C~ICLe~~~~~~-~v~~lpCgH~FH~~CI~~WL-------~~~~tCPlCR~~i~~~ 259 (274)
+...|.+|...|..-. ....-.||.+||..|....+ +....|-.|-..+...
T Consensus 8 ~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~~~~lp~~g~~~~RVC~~C~~~l~~~ 67 (88)
T 1wfk_A 8 MESRCYGCAVKFTLFKKEYGCKNCGRAFCNGCLSFSALVPRAGNTQQKVCKQCHTILTRG 67 (88)
T ss_dssp CCSBCTTTCCBCCSSSCEEECSSSCCEEETTTSCEEEEETTTTSEEEEECHHHHHHHHHC
T ss_pred cCCCCcCcCCcccCccccccCCCCCCEEChhHcCCceeccccCCCcCEECHHHHHHHHhc
Confidence 4558999999987543 33345599999999976532 1234588886665443
No 131
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=48.93 E-value=12 Score=26.13 Aligned_cols=31 Identities=13% Similarity=0.268 Sum_probs=23.0
Q ss_pred ccccccccccccCC-eeEEeCCCCccChhhHH
Q 024005 210 LTCTVCLEQVNVGE-IVRSLPCLHQFHANCID 240 (274)
Q Consensus 210 ~~C~ICLe~~~~~~-~v~~lpCgH~FH~~CI~ 240 (274)
..|.+|...|..-. ....-.||.+||..|..
T Consensus 12 ~~C~~C~~~F~~~~RrHHCR~CG~v~C~~Cs~ 43 (73)
T 1vfy_A 12 DACMICSKKFSLLNRKHHCRSCGGVFCQEHSS 43 (73)
T ss_dssp SBCTTTCCBCBTTBCCEECTTTCCEECGGGSC
T ss_pred CcccCCCCccCCccccccCCCCCEEEcccccC
Confidence 47999999987543 23334599999999964
No 132
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=48.49 E-value=8.4 Score=32.58 Aligned_cols=33 Identities=15% Similarity=0.335 Sum_probs=24.2
Q ss_pred cccccccccccccCC-eeEEeCCCCccChhhHHH
Q 024005 209 ELTCTVCLEQVNVGE-IVRSLPCLHQFHANCIDP 241 (274)
Q Consensus 209 ~~~C~ICLe~~~~~~-~v~~lpCgH~FH~~CI~~ 241 (274)
...|.+|...|..-. ....-.||++||..|...
T Consensus 161 ~~~C~~C~~~F~~~~rrhhCr~CG~v~C~~Cs~~ 194 (220)
T 1dvp_A 161 GRVCHRCRVEFTFTNRKHHCRNCGQVFCGQCTAK 194 (220)
T ss_dssp CSBCTTTCCBCCSSSCCEECTTTCCEECSTTSCE
T ss_pred CCccCCCCCccCCcccccccCCcCCEEChHHhCC
Confidence 358999999987443 333445999999999654
No 133
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=48.03 E-value=8.8 Score=32.76 Aligned_cols=50 Identities=18% Similarity=0.346 Sum_probs=32.5
Q ss_pred cccccccccccccCC-eeEEeCCCCccChhhHHHHHh--------cCCCCccccccccC
Q 024005 209 ELTCTVCLEQVNVGE-IVRSLPCLHQFHANCIDPWLR--------QQGTCPVCKLRAGS 258 (274)
Q Consensus 209 ~~~C~ICLe~~~~~~-~v~~lpCgH~FH~~CI~~WL~--------~~~tCPlCR~~i~~ 258 (274)
...|.+|...|..-. ....-.||++||..|-..... ....|-.|-..+..
T Consensus 164 ~~~C~~C~~~F~~~~RrhHCR~CG~v~C~~Cs~~~~~~p~~~~~~~~RVC~~C~~~l~~ 222 (226)
T 3zyq_A 164 AEECHRCRVQFGVMTRKHHCRACGQIFCGKCSSKYSTIPKFGIEKEVRVCEPCYEQLNR 222 (226)
T ss_dssp CSBCTTTCCBCBTTBCCEECTTTCCEECTTTCCEEEEEGGGTEEEEEEECHHHHHHHCC
T ss_pred CCCCcCcCCCCCccccccccCCCcCEeChhhcCCcccCCCCCCCCCCEeCHHHHHHhhh
Confidence 348999999987543 233455999999999765321 12357777555543
No 134
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=47.10 E-value=8 Score=30.52 Aligned_cols=33 Identities=21% Similarity=0.372 Sum_probs=24.1
Q ss_pred Ccccccccccccc-c-CCeeEEeCCCCccChhhHH
Q 024005 208 DELTCTVCLEQVN-V-GEIVRSLPCLHQFHANCID 240 (274)
Q Consensus 208 e~~~C~ICLe~~~-~-~~~v~~lpCgH~FH~~CI~ 240 (274)
.+..|.+|...+. . +.......|.|.+|..|-.
T Consensus 54 ~~~~C~~C~~~~g~l~~~g~~C~~C~~~VC~~C~~ 88 (134)
T 1zbd_B 54 GVNRCILCGEQLGMLGSASVVCEDCKKNVCTKCGV 88 (134)
T ss_dssp SSSBCSSSCCBCSTTSCCEEECTTTCCEEETTSEE
T ss_pred CCccccccCCCcccccCCCCCCCCCCcccccccCC
Confidence 4568999999983 2 2344556699999998854
No 135
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=47.02 E-value=4 Score=37.70 Aligned_cols=50 Identities=14% Similarity=0.189 Sum_probs=0.0
Q ss_pred CCcccccccccccccCC-eeEEeCCCCccChhhHHHHHh-------cCCCCccccccc
Q 024005 207 EDELTCTVCLEQVNVGE-IVRSLPCLHQFHANCIDPWLR-------QQGTCPVCKLRA 256 (274)
Q Consensus 207 ~e~~~C~ICLe~~~~~~-~v~~lpCgH~FH~~CI~~WL~-------~~~tCPlCR~~i 256 (274)
.+...|.+|...|..-. ...+-.||++||..|-..++. ....|-.|-..+
T Consensus 373 ~~~~~c~~c~~~f~~~~r~h~Cr~Cg~~~C~~Cs~~~~~~~~~~~~~~rvC~~C~~~l 430 (434)
T 3mpx_A 373 THVMMCMNCGCDFSLTLRRHHCHACGKIVCRNCSRNKYPLKYLKDRMAKVCDGCFGEL 430 (434)
T ss_dssp ----------------------------------------------------------
T ss_pred ccCCcCCCcCCCCCCcchhhhcccCcCEeehhhCCCeeeCCCCCCCcCEecHHHHHHH
Confidence 34568999999886442 233456999999999877642 134577775544
No 136
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=46.98 E-value=7 Score=26.54 Aligned_cols=42 Identities=19% Similarity=0.405 Sum_probs=27.7
Q ss_pred cccccccccccCCeeEEeCCCCccChhhHHHHHhcCCCCccc
Q 024005 211 TCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQQGTCPVC 252 (274)
Q Consensus 211 ~C~ICLe~~~~~~~v~~lpCgH~FH~~CI~~WL~~~~tCPlC 252 (274)
.|--|+..+........-.|++.||.+|=.---..-..||-|
T Consensus 17 ~C~~C~~~~~~~~~y~C~~C~~~FC~dCD~fiHe~Lh~CPgC 58 (59)
T 1z60_A 17 FCYGCQGELKDQHVYVCAVCQNVFCVDCDVFVHDSLHSCPGC 58 (59)
T ss_dssp EETTTTEECTTSEEECCTTTTCCBCHHHHHTTTTTSCSSSTT
T ss_pred cccccCcccCCCccEECCccCcCcccchhHHHHhhccCCcCC
Confidence 599999988643222234499999999932222344579988
No 137
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*
Probab=44.43 E-value=4.1 Score=27.50 Aligned_cols=43 Identities=28% Similarity=0.683 Sum_probs=26.2
Q ss_pred CcccccccccccccCCeeEEeC--CC-CccChhhHHHHHhcC----CCCccccc
Q 024005 208 DELTCTVCLEQVNVGEIVRSLP--CL-HQFHANCIDPWLRQQ----GTCPVCKL 254 (274)
Q Consensus 208 e~~~C~ICLe~~~~~~~v~~lp--Cg-H~FH~~CI~~WL~~~----~tCPlCR~ 254 (274)
+..-| ||..... ++-+..=. |. .-||..|+. |... -.||.|+.
T Consensus 9 e~~~C-~C~~~~~-g~mi~CD~cdC~~~wfH~~Cvg--l~~~p~g~w~C~~C~~ 58 (60)
T 2vnf_A 9 EPTYC-LCHQVSY-GEMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQ 58 (60)
T ss_dssp CCEET-TTTEECC-SEEEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred CCCEE-ECCCcCC-CCEEEeCCCCCCCceEehhcCC--CCcCCCCCEECcCccC
Confidence 34456 9987643 43333333 44 679999987 4332 25898864
No 138
>2jvx_A NF-kappa-B essential modulator; CCHC classical zinc finger, NEMO zinc finger, beta-BETA- alpha fold, coiled coil, cytoplasm, disease mutation; NMR {Synthetic} PDB: 2jvy_A
Probab=42.49 E-value=6 Score=22.82 Aligned_cols=13 Identities=31% Similarity=0.728 Sum_probs=9.2
Q ss_pred CCCCccccccccC
Q 024005 246 QGTCPVCKLRAGS 258 (274)
Q Consensus 246 ~~tCPlCR~~i~~ 258 (274)
+..||+|+..++.
T Consensus 3 k~~CpvCk~q~Pd 15 (28)
T 2jvx_A 3 DFCCPKCQYQAPD 15 (28)
T ss_dssp CEECTTSSCEESS
T ss_pred cccCccccccCcC
Confidence 3468999887654
No 139
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=41.39 E-value=13 Score=25.37 Aligned_cols=42 Identities=12% Similarity=0.097 Sum_probs=18.7
Q ss_pred CcccccccccccccCCeeEEeCCCCccCh-hhHHHHHhcCCCCcccc
Q 024005 208 DELTCTVCLEQVNVGEIVRSLPCLHQFHA-NCIDPWLRQQGTCPVCK 253 (274)
Q Consensus 208 e~~~C~ICLe~~~~~~~v~~lpCgH~FH~-~CI~~WL~~~~tCPlCR 253 (274)
+-..|..|...+..+. ....=+..||. .|..+- ....|-.|.
T Consensus 26 ~CF~C~~C~~~L~~~~--~~~~~g~~yC~~~cy~~~--f~~~C~~C~ 68 (76)
T 1iml_A 26 PCLKCEKCGKTLTSGG--HAEHEGKPYCNHPCYSAM--FGPKGFGRG 68 (76)
T ss_dssp TTCBCTTTCCBCCTTT--EEEETTEEEETTTHHHHH--SSCCCSSCC
T ss_pred CCCCccccCccCCCCc--eECcCCeEeeCHHHHHHH--hCccCCCcC
Confidence 3445666665554431 11223444555 354332 233455553
No 140
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=40.28 E-value=5.2 Score=30.12 Aligned_cols=45 Identities=18% Similarity=0.561 Sum_probs=29.4
Q ss_pred cccccccccccCCeeEEeCCCCccChhhHHHHHhc----CCCCcccccc
Q 024005 211 TCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQ----QGTCPVCKLR 255 (274)
Q Consensus 211 ~C~ICLe~~~~~~~v~~lpCgH~FH~~CI~~WL~~----~~tCPlCR~~ 255 (274)
.|.+|...-.....+..-.|...||..|+.+=+.. .-.||.|+..
T Consensus 56 ~C~~C~~~~~~~~ll~Cd~C~~~yH~~Cl~ppl~~~P~g~W~C~~C~~c 104 (111)
T 2ysm_A 56 VCQNCKQSGEDSKMLVCDTCDKGYHTFCLQPVMKSVPTNGWKCKNCRIC 104 (111)
T ss_dssp CCTTTCCCSCCTTEEECSSSCCEEEGGGSSSCCSSCCSSCCCCHHHHCC
T ss_pred cccccCccCCCCCeeECCCCCcHHhHHhcCCccccCCCCCcCCcCCcCc
Confidence 57788766443334444458999999999864443 2258888553
No 141
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A*
Probab=39.70 E-value=5.5 Score=26.81 Aligned_cols=43 Identities=30% Similarity=0.703 Sum_probs=27.0
Q ss_pred CcccccccccccccCCeeEEeC--CC-CccChhhHHHHHhc----CCCCccccc
Q 024005 208 DELTCTVCLEQVNVGEIVRSLP--CL-HQFHANCIDPWLRQ----QGTCPVCKL 254 (274)
Q Consensus 208 e~~~C~ICLe~~~~~~~v~~lp--Cg-H~FH~~CI~~WL~~----~~tCPlCR~ 254 (274)
+..-| ||..... ++-+..=. |. .-||..|+. |.. +-.||.|+.
T Consensus 8 e~~yC-~C~~~~~-g~mi~CD~~~C~~~wfH~~Cvg--l~~~p~~~w~Cp~C~~ 57 (59)
T 3c6w_A 8 EPTYC-LCHQVSY-GEMIGCDNPDCPIEWFHFACVD--LTTKPKGKWFCPRCVQ 57 (59)
T ss_dssp CCEET-TTTEECC-SEEEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred CCcEE-ECCCCCC-CCeeEeeCCCCCCCCEecccCC--cccCCCCCEECcCccC
Confidence 34456 9987643 54444444 55 689999987 433 235998864
No 142
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A*
Probab=39.59 E-value=21 Score=23.01 Aligned_cols=43 Identities=19% Similarity=0.313 Sum_probs=27.5
Q ss_pred cccccccccccCC-eeEEe-CCCCccChhhHHHH----HhcCCCCcccc
Q 024005 211 TCTVCLEQVNVGE-IVRSL-PCLHQFHANCIDPW----LRQQGTCPVCK 253 (274)
Q Consensus 211 ~C~ICLe~~~~~~-~v~~l-pCgH~FH~~CI~~W----L~~~~tCPlCR 253 (274)
.|.+|...+..++ -+..- .|..-||..|+.-- ...+-.||.|+
T Consensus 4 ~cc~C~~p~~~~~~mI~Cd~~C~~WfH~~Cvgl~~~~~~~~~~~C~~C~ 52 (52)
T 2kgg_A 4 AAQNCQRPCKDKVDWVQCDGGCDEWFHQVCVGVSPEMAENEDYICINCA 52 (52)
T ss_dssp SCTTCCCCCCTTCCEEECTTTTCCEEETTTTTCCHHHHHHSCCCCSCC-
T ss_pred cCCCCcCccCCCCcEEEeCCCCCccCcccccCCCccccCCCCEECCCCC
Confidence 5788988875443 33334 58888999996421 12456788885
No 143
>2l9u_A Receptor tyrosine-protein kinase ERBB-3; transmenbrane dimer, membrane protein, EGFR; NMR {Homo sapiens}
Probab=38.20 E-value=26 Score=21.15 Aligned_cols=6 Identities=50% Similarity=1.242 Sum_probs=3.5
Q ss_pred HHHHHh
Q 024005 47 LLFMIL 52 (274)
Q Consensus 47 ~~~~~~ 52 (274)
++||+|
T Consensus 18 vif~~l 23 (40)
T 2l9u_A 18 VIFMML 23 (40)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 466665
No 144
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=38.01 E-value=36 Score=23.33 Aligned_cols=38 Identities=16% Similarity=0.207 Sum_probs=27.6
Q ss_pred cccccccccccccCCeeEEeCCCCccChhhHHHHHhcCCCCcccccccc
Q 024005 209 ELTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQQGTCPVCKLRAG 257 (274)
Q Consensus 209 ~~~C~ICLe~~~~~~~v~~lpCgH~FH~~CI~~WL~~~~tCPlCR~~i~ 257 (274)
...|.-|-+.+.. + ....-+..||.+|. .|-.|+..+.
T Consensus 15 ~~~C~~C~~~I~~-~--~~~a~~~~~H~~CF--------~C~~C~~~L~ 52 (79)
T 1x62_A 15 LPMCDKCGTGIVG-V--FVKLRDRHRHPECY--------VCTDCGTNLK 52 (79)
T ss_dssp CCCCSSSCCCCCS-S--CEECSSCEECTTTT--------SCSSSCCCHH
T ss_pred CCccccCCCCccC-c--EEEECcceeCcCcC--------eeCCCCCCCC
Confidence 4589999988774 3 23335788998884 5888888775
No 145
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=37.74 E-value=20 Score=24.44 Aligned_cols=41 Identities=24% Similarity=0.458 Sum_probs=30.2
Q ss_pred cccccccccccccCCeeEEeCCCCccChhhHHHHHhcCCCCccccccccCC
Q 024005 209 ELTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQQGTCPVCKLRAGSG 259 (274)
Q Consensus 209 ~~~C~ICLe~~~~~~~v~~lpCgH~FH~~CI~~WL~~~~tCPlCR~~i~~~ 259 (274)
...|..|-+.+..++.+. .-+..||.+| ..|..|+..+...
T Consensus 9 ~~~C~~C~~~I~~~~~v~--a~~~~~H~~C--------F~C~~C~~~L~~~ 49 (76)
T 2cu8_A 9 ASKCPKCDKTVYFAEKVS--SLGKDWHKFC--------LKCERCSKTLTPG 49 (76)
T ss_dssp CCBCTTTCCBCCTTTEEE--ETTEEEETTT--------CBCSSSCCBCCTT
T ss_pred CCCCcCCCCEeECCeEEE--ECCeEeeCCC--------CCCCCCCCccCCC
Confidence 347999999988666543 3477889887 3588998888643
No 146
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=36.05 E-value=9.6 Score=22.94 Aligned_cols=9 Identities=22% Similarity=1.006 Sum_probs=4.1
Q ss_pred ccccccccc
Q 024005 210 LTCTVCLEQ 218 (274)
Q Consensus 210 ~~C~ICLe~ 218 (274)
..|+||+.+
T Consensus 6 FiCP~C~~~ 14 (34)
T 3mjh_B 6 FICPQCMKS 14 (34)
T ss_dssp EECTTTCCE
T ss_pred cCCcHHHHH
Confidence 345555443
No 147
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=35.56 E-value=23 Score=28.50 Aligned_cols=46 Identities=22% Similarity=0.481 Sum_probs=30.9
Q ss_pred Ccccccccccccc--cCCeeEEeCCCCccChhhHHHHHhcCC--CCccccc
Q 024005 208 DELTCTVCLEQVN--VGEIVRSLPCLHQFHANCIDPWLRQQG--TCPVCKL 254 (274)
Q Consensus 208 e~~~C~ICLe~~~--~~~~v~~lpCgH~FH~~CI~~WL~~~~--tCPlCR~ 254 (274)
++..|.+|...|. .+.......|.|.+|..|- .|+.... .|-+|..
T Consensus 67 ~~~~C~~C~~~fg~l~~~g~~C~~C~~~VC~~C~-~~~~~~~~W~C~vC~k 116 (153)
T 2zet_C 67 NETHCARCLQPYRLLLNSRRQCLECSLFVCKSCS-HAHPEEQGWLCDPCHL 116 (153)
T ss_dssp GGTBCTTTCCBGGGCSSCCEECTTTCCEECGGGE-ECCSSSSSCEEHHHHH
T ss_pred CCccchhhcCccccccCCCCcCCCCCchhhcccc-cccCCCCcEeeHHHHH
Confidence 4678999999863 3345556669999999996 2443322 3666654
No 148
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*
Probab=34.21 E-value=25 Score=32.69 Aligned_cols=45 Identities=16% Similarity=0.446 Sum_probs=32.1
Q ss_pred CCcccccccccccccCCeeEEe--CCCCccChhhHHHHHhc----------CCCCccccc
Q 024005 207 EDELTCTVCLEQVNVGEIVRSL--PCLHQFHANCIDPWLRQ----------QGTCPVCKL 254 (274)
Q Consensus 207 ~e~~~C~ICLe~~~~~~~v~~l--pCgH~FH~~CI~~WL~~----------~~tCPlCR~ 254 (274)
..+.-|.||-+. ++.+..- .|...||..||+.++.. .=.|=+|.-
T Consensus 91 G~~~yCr~C~~G---g~l~~Cdn~~C~r~FC~~Ci~~n~g~~~~~~i~~~d~W~Cf~C~p 147 (386)
T 2pv0_B 91 GYQSYCSICCSG---ETLLICGNPDCTRCYCFECVDSLVGPGTSGKVHAMSNWVCYLCLP 147 (386)
T ss_dssp SSBCSCTTTCCC---SSCEECCSTTCCCEECHHHHHHHTCTTHHHHHHHCSSCCCTTTSS
T ss_pred CCcccceEcCCC---CeEEEeCCCCCCcchHHHHHHHhcChhHHHHhhccCCceEEEcCC
Confidence 346688999765 4555555 69999999999999832 225877753
No 149
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=33.28 E-value=41 Score=23.31 Aligned_cols=41 Identities=22% Similarity=0.529 Sum_probs=30.1
Q ss_pred CcccccccccccccCCeeEEeCCCCccChhhHHHHHhcCCCCccccccccC
Q 024005 208 DELTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQQGTCPVCKLRAGS 258 (274)
Q Consensus 208 e~~~C~ICLe~~~~~~~v~~lpCgH~FH~~CI~~WL~~~~tCPlCR~~i~~ 258 (274)
....|.-|-..+..++.+.. -+..||.+| ..|-.|+..+..
T Consensus 14 ~~~~C~~C~~~I~~~~~v~a--~~~~wH~~C--------F~C~~C~~~L~~ 54 (80)
T 2dj7_A 14 GPSHCAGCKEEIKHGQSLLA--LDKQWHVSC--------FKCQTCSVILTG 54 (80)
T ss_dssp SCSCCTTTCCCCSSSCCEEE--TTEEECTTT--------CBCSSSCCBCSS
T ss_pred CCCCCcCcCCeeCCCeEEEE--CCccccccc--------CCcCcCCCCcCC
Confidence 34579999998876665443 467889887 468889888763
No 150
>1zfo_A LAsp-1; LIM domain, zinc-finger, metal-binding protein; NMR {Sus scrofa} SCOP: g.39.1.4
Probab=33.02 E-value=15 Score=21.15 Aligned_cols=26 Identities=27% Similarity=0.400 Sum_probs=18.3
Q ss_pred cccccccccccCCeeEEeCCCCccChhh
Q 024005 211 TCTVCLEQVNVGEIVRSLPCLHQFHANC 238 (274)
Q Consensus 211 ~C~ICLe~~~~~~~v~~lpCgH~FH~~C 238 (274)
.|+.|-..+-..+.+. --|..||..|
T Consensus 5 ~C~~C~k~Vy~~Ek~~--~~g~~~Hk~C 30 (31)
T 1zfo_A 5 NCARCGKIVYPTEKVN--CLDKFWHKAC 30 (31)
T ss_dssp BCSSSCSBCCGGGCCC--SSSSCCCGGG
T ss_pred cCCccCCEEecceeEE--ECCeEecccC
Confidence 6888888776555433 3477888887
No 151
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=31.43 E-value=82 Score=21.93 Aligned_cols=41 Identities=17% Similarity=0.273 Sum_probs=29.3
Q ss_pred CcccccccccccccCCeeEEeCCCCccChhhHHHHHhcCCCCccccccccCC
Q 024005 208 DELTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQQGTCPVCKLRAGSG 259 (274)
Q Consensus 208 e~~~C~ICLe~~~~~~~v~~lpCgH~FH~~CI~~WL~~~~tCPlCR~~i~~~ 259 (274)
....|.-|-+.+.. +. ...-+..||.+| ..|-.|+..+...
T Consensus 24 ~~~~C~~C~~~I~~-~~--~~a~~~~~H~~C--------F~C~~C~~~L~~~ 64 (89)
T 1x64_A 24 RMPLCDKCGSGIVG-AV--VKARDKYRHPEC--------FVCADCNLNLKQK 64 (89)
T ss_dssp SCCBCTTTCCBCCS-CC--EESSSCEECTTT--------CCCSSSCCCTTTS
T ss_pred cCCCcccCCCEecc-cE--EEECCceECccC--------CEecCCCCCCCCC
Confidence 34579999988774 22 333678899988 3588898888653
No 152
>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger, histone binding, chromosomal protein, DNA damag repair, DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens} PDB: 3a1a_A*
Probab=30.95 E-value=27 Score=28.40 Aligned_cols=36 Identities=22% Similarity=0.481 Sum_probs=25.8
Q ss_pred CCcccccccccccccCCeeEEe--CCCCccChhhHHHHHhc
Q 024005 207 EDELTCTVCLEQVNVGEIVRSL--PCLHQFHANCIDPWLRQ 245 (274)
Q Consensus 207 ~e~~~C~ICLe~~~~~~~v~~l--pCgH~FH~~CI~~WL~~ 245 (274)
..+.-|.||-+. ++.+..- .|...||.+||+.++..
T Consensus 77 G~~~yC~wC~~G---g~l~~Cdn~~C~r~FC~~CI~~nvG~ 114 (159)
T 3a1b_A 77 GYQSYCTICCGG---REVLMCGNNNCCRCFCVECVDLLVGP 114 (159)
T ss_dssp SSBSSCTTTSCC---SEEEECSSTTTCCEEEHHHHHHHTCT
T ss_pred CCcceeeEecCC---CeEEeeCCCCCCCchhHHHHHHhcCH
Confidence 346689999864 4333333 48899999999998743
No 153
>2rqw_B 24-meric peptide from serine/threonine-protein KI STE20; BEM1P, STE20P, SH3CI, PRR, cytoplasm, cytoskeleton, SH3 DOMA cycle; NMR {Saccharomyces cerevisiae}
Probab=30.17 E-value=16 Score=20.54 Aligned_cols=11 Identities=36% Similarity=0.619 Sum_probs=8.6
Q ss_pred CCCcCcccccc
Q 024005 18 GFIPERRTVRI 28 (274)
Q Consensus 18 ~~~~~~~~~~~ 28 (274)
-|||-||+=+-
T Consensus 7 KFiPsRPAPKP 17 (26)
T 2rqw_B 7 KFIPSRPAPKP 17 (26)
T ss_dssp SSCCSSCCCCC
T ss_pred ccccCCCCCCC
Confidence 59999998553
No 154
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=29.59 E-value=44 Score=22.83 Aligned_cols=42 Identities=26% Similarity=0.566 Sum_probs=29.8
Q ss_pred cccccccccccccCCeeEEeCCCCccChhhHHHHHhcCCCCccccccccCC
Q 024005 209 ELTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQQGTCPVCKLRAGSG 259 (274)
Q Consensus 209 ~~~C~ICLe~~~~~~~v~~lpCgH~FH~~CI~~WL~~~~tCPlCR~~i~~~ 259 (274)
...|..|-..+..++.+. ..-+..||.+|. .|-.|+..+..+
T Consensus 15 ~~~C~~C~~~I~~~~~~~-~a~~~~~H~~CF--------~C~~C~~~L~~~ 56 (82)
T 1x63_A 15 SPKCKGCFKAIVAGDQNV-EYKGTVWHKDCF--------TCSNCKQVIGTG 56 (82)
T ss_dssp SCBCSSSCCBCCSSSCEE-ECSSCEEETTTC--------CCSSSCCCCTTS
T ss_pred CCcCccCCcccccCceEE-EECccccccccC--------chhhCCCccCCC
Confidence 357999999887655432 235778998873 588888887654
No 155
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=26.83 E-value=61 Score=22.39 Aligned_cols=43 Identities=28% Similarity=0.419 Sum_probs=30.6
Q ss_pred CcccccccccccccCCeeEEeCCCCccChhhHHHHHhcCCCCccccccccCCC
Q 024005 208 DELTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQQGTCPVCKLRAGSGW 260 (274)
Q Consensus 208 e~~~C~ICLe~~~~~~~v~~lpCgH~FH~~CI~~WL~~~~tCPlCR~~i~~~~ 260 (274)
....|..|-..+...+.+. .-+..||.+| ..|-.|+..+....
T Consensus 14 ~~~~C~~C~~~I~~~e~v~--a~~~~wH~~C--------F~C~~C~~~L~~~~ 56 (82)
T 2co8_A 14 AGDLCALCGEHLYVLERLC--VNGHFFHRSC--------FRCHTCEATLWPGG 56 (82)
T ss_dssp SSCBCSSSCCBCCTTTBCC--BTTBCCBTTT--------CBCSSSCCBCCTTS
T ss_pred CCCCCcccCCCcccceEEE--ECCCeeCCCc--------CEEcCCCCCcCCCc
Confidence 3457999999886555443 3477899888 45888888776543
No 156
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=26.75 E-value=45 Score=25.03 Aligned_cols=52 Identities=13% Similarity=0.045 Sum_probs=35.8
Q ss_pred CcccccccccccccCCeeEEeCCCCccChhhHHHHHhcCCCCccccccccCC
Q 024005 208 DELTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQQGTCPVCKLRAGSG 259 (274)
Q Consensus 208 e~~~C~ICLe~~~~~~~v~~lpCgH~FH~~CI~~WL~~~~tCPlCR~~i~~~ 259 (274)
+-..|..|-..+..........=+..||..|..+-+..+..|-.|...|...
T Consensus 31 ~CF~C~~C~~~L~~~~~~~~~~~g~~yC~~cy~~~f~~~~~C~~C~~~I~~~ 82 (122)
T 1m3v_A 31 RCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFGNSGAGGSGGHMGSGG 82 (122)
T ss_dssp HHHCCSSSCCCTTTSEECCEEETTEEECHHHHHHHHCCCCSSSCSSCCSCCE
T ss_pred hCCCcCCCCCcccccCCeEEEECCeeecHHHHHHHcCCCCccccCCCCcCch
Confidence 3468888988875211112333567899999888766666899999988753
No 157
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=26.51 E-value=54 Score=21.59 Aligned_cols=38 Identities=16% Similarity=0.417 Sum_probs=26.1
Q ss_pred ccccccccccccCCeeEEeCCCCccChhhHHHHHhcCCCCccccccccC
Q 024005 210 LTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQQGTCPVCKLRAGS 258 (274)
Q Consensus 210 ~~C~ICLe~~~~~~~v~~lpCgH~FH~~CI~~WL~~~~tCPlCR~~i~~ 258 (274)
..|..|-..+.. +. ...-+..||.+| ..|-.|+.++..
T Consensus 6 ~~C~~C~~~I~~-~~--~~a~~~~~H~~C--------F~C~~C~~~L~~ 43 (70)
T 2d8z_A 6 SGCVQCKKPITT-GG--VTYREQPWHKEC--------FVCTACRKQLSG 43 (70)
T ss_dssp CBCSSSCCBCCS-SE--EESSSSEEETTT--------SBCSSSCCBCTT
T ss_pred CCCcccCCeecc-ce--EEECccccCCCC--------CccCCCCCcCCc
Confidence 368888888763 32 333577888877 358888887753
No 158
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=26.11 E-value=9.9 Score=28.85 Aligned_cols=25 Identities=24% Similarity=0.460 Sum_probs=15.9
Q ss_pred EeCCCCccChhhHHHHHhcCCCCccccccc
Q 024005 227 SLPCLHQFHANCIDPWLRQQGTCPVCKLRA 256 (274)
Q Consensus 227 ~lpCgH~FH~~CI~~WL~~~~tCPlCR~~i 256 (274)
+..||+.|. .=+.....||.|+..-
T Consensus 70 C~~CG~~F~-----~~~~kPsrCP~CkSe~ 94 (105)
T 2gmg_A 70 CRKCGFVFK-----AEINIPSRCPKCKSEW 94 (105)
T ss_dssp BTTTCCBCC-----CCSSCCSSCSSSCCCC
T ss_pred hhhCcCeec-----ccCCCCCCCcCCCCCc
Confidence 456888881 1123456799998743
No 159
>1jdm_A Sarcolipin; helix, membrane protein; NMR {Synthetic} SCOP: j.35.1.1
Probab=25.11 E-value=57 Score=18.82 Aligned_cols=25 Identities=32% Similarity=0.486 Sum_probs=16.9
Q ss_pred cccCcchhHHHHHHHHHHHHhccCC
Q 024005 32 RPVNSNSLAFLVTVLLLFMILNSHQ 56 (274)
Q Consensus 32 ~~~~~~~~~~l~~~~~~~~~~~~~~ 56 (274)
|-.=.|..+.|+++++...++-|-|
T Consensus 6 qELf~NFt~vLI~vlLi~llVrsyq 30 (31)
T 1jdm_A 6 RELFLNFTIVLITVILMWLLVRSYQ 30 (31)
T ss_dssp SSSHHHHHHHHHHHHHHHHHTTSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3444577788888888777765543
No 160
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=24.78 E-value=53 Score=21.75 Aligned_cols=41 Identities=27% Similarity=0.413 Sum_probs=27.7
Q ss_pred ccccccccccccCCeeEEeCCCCccChhhHHHHHhcCCCCccccccccCC
Q 024005 210 LTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQQGTCPVCKLRAGSG 259 (274)
Q Consensus 210 ~~C~ICLe~~~~~~~v~~lpCgH~FH~~CI~~WL~~~~tCPlCR~~i~~~ 259 (274)
..|.-|-..+..++.+ ...-+..||.+| .+|-.|+.++...
T Consensus 6 ~~C~~C~~~I~~~~~~-~~a~~~~~H~~C--------F~C~~C~~~L~~~ 46 (72)
T 1wyh_A 6 SGCSACGETVMPGSRK-LEYGGQTWHEHC--------FLCSGCEQPLGSR 46 (72)
T ss_dssp CBCSSSCCBCCSSSCE-ECSTTCCEETTT--------CBCTTTCCBTTTS
T ss_pred CCCccCCCccccCccE-EEECccccCccc--------CeECCCCCcCCCC
Confidence 4789998887754332 233577888877 3588888877653
No 161
>3f6q_B LIM and senescent cell antigen-like-containing domain protein 1; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 2kbx_B 3ixe_B
Probab=24.45 E-value=30 Score=22.85 Aligned_cols=42 Identities=21% Similarity=0.470 Sum_probs=30.2
Q ss_pred cccccccccccccCCeeEEeCCCCccChhhHHHHHhcCCCCccccccccCC
Q 024005 209 ELTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQQGTCPVCKLRAGSG 259 (274)
Q Consensus 209 ~~~C~ICLe~~~~~~~v~~lpCgH~FH~~CI~~WL~~~~tCPlCR~~i~~~ 259 (274)
...|.-|-..+...+.+.. .-+..||..|. .|-.|+..+..+
T Consensus 11 ~~~C~~C~~~i~~~e~~~~-~~~~~~H~~CF--------~C~~C~~~L~~~ 52 (72)
T 3f6q_B 11 SATCERCKGGFAPAEKIVN-SNGELYHEQCF--------VCAQCFQQFPEG 52 (72)
T ss_dssp TCBCTTTCCBCCTTCEEEE-ETTEEEETTTS--------SCTTTCCCCGGG
T ss_pred CccchhcCccccCCceEEE-eCcCeeCcCCC--------cccCCCCCCCCC
Confidence 4479999999886655432 34667888884 588898887654
No 162
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}
Probab=24.11 E-value=34 Score=23.43 Aligned_cols=47 Identities=17% Similarity=0.431 Sum_probs=30.0
Q ss_pred CCcccccccccccccCCeeEEeCCCCccChhhHHHHHh---cCCCCccccc
Q 024005 207 EDELTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLR---QQGTCPVCKL 254 (274)
Q Consensus 207 ~e~~~C~ICLe~~~~~~~v~~lpCgH~FH~~CI~~WL~---~~~tCPlCR~ 254 (274)
.+...| ||......+.-+..-.|..-||..|+.---. ..-.||.|+.
T Consensus 17 ~~~~~C-iC~~~~~~~~MIqCd~C~~WfH~~Cvgi~~~~~~~~~~C~~C~~ 66 (68)
T 3o70_A 17 QGLVTC-FCMKPFAGRPMIECNECHTWIHLSCAKIRKSNVPEVFVCQKCRD 66 (68)
T ss_dssp TTCCCS-TTCCCCTTCCEEECTTTCCEEETTTTTCCTTSCCSSCCCHHHHT
T ss_pred CCceEe-ECCCcCCCCCEEECCCCCccccccccCcCcccCCCcEECCCCCC
Confidence 355678 9988766333444555899999999753211 2336888854
No 163
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=24.08 E-value=54 Score=21.70 Aligned_cols=41 Identities=20% Similarity=0.438 Sum_probs=27.4
Q ss_pred ccccccccccccCCeeEEeCCCCccChhhHHHHHhcCCCCccccccccCC
Q 024005 210 LTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQQGTCPVCKLRAGSG 259 (274)
Q Consensus 210 ~~C~ICLe~~~~~~~v~~lpCgH~FH~~CI~~WL~~~~tCPlCR~~i~~~ 259 (274)
..|..|-..+...+.+.. .-+..||.+|. .|-.|+..+...
T Consensus 6 ~~C~~C~~~I~~~~~~~~-a~~~~~H~~CF--------~C~~C~~~L~~~ 46 (72)
T 1x4k_A 6 SGCQECKKTIMPGTRKME-YKGSSWHETCF--------ICHRCQQPIGTK 46 (72)
T ss_dssp CCBSSSCCCCCSSSCEEE-ETTEEEETTTT--------CCSSSCCCCCSS
T ss_pred CCCccCCCcccCCceEEE-ECcCeecccCC--------cccccCCccCCC
Confidence 379999888876543322 24667888773 588888777654
No 164
>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=23.79 E-value=1.4e+02 Score=20.83 Aligned_cols=42 Identities=29% Similarity=0.578 Sum_probs=28.2
Q ss_pred CcccccccccccccCCeeEEeCCCCccChhhHHHHHhcCCCCccccccccCC
Q 024005 208 DELTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQQGTCPVCKLRAGSG 259 (274)
Q Consensus 208 e~~~C~ICLe~~~~~~~v~~lpCgH~FH~~CI~~WL~~~~tCPlCR~~i~~~ 259 (274)
....|.-|-..+...+.+ ..-+..||.+|. .|-.|+..+...
T Consensus 14 ~~~~C~~C~~~I~~~~~v--~a~~~~~H~~CF--------~C~~C~~~L~~~ 55 (91)
T 2d8y_A 14 ARETCVECQKTVYPMERL--LANQQVFHISCF--------RCSYCNNKLSLG 55 (91)
T ss_dssp SSCBCTTTCCBCCTTSEE--ECSSSEEETTTC--------BCTTTCCBCCTT
T ss_pred CCCcCccCCCccCCceeE--EECCCEECCCCC--------eeCCCCCCCCCC
Confidence 345788888888765543 345777888773 477777776654
No 165
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=23.73 E-value=66 Score=22.39 Aligned_cols=48 Identities=19% Similarity=0.445 Sum_probs=31.8
Q ss_pred CcccccccccccccCCeeEEe--CCCCccChhhHHHHH---------hcCCCCccccccc
Q 024005 208 DELTCTVCLEQVNVGEIVRSL--PCLHQFHANCIDPWL---------RQQGTCPVCKLRA 256 (274)
Q Consensus 208 e~~~C~ICLe~~~~~~~v~~l--pCgH~FH~~CI~~WL---------~~~~tCPlCR~~i 256 (274)
+...| ||-.....+.-+..- .|..-||..|+.--- ..+-.||.|+..-
T Consensus 15 ~~~~C-iC~~~~~~g~MI~CD~~~C~~W~H~~CVgi~~~~~~~~~~~~~~~~C~~C~~~~ 73 (78)
T 1wew_A 15 IKVRC-VCGNSLETDSMIQCEDPRCHVWQHVGCVILPDKPMDGNPPLPESFYCEICRLTS 73 (78)
T ss_dssp CCCCC-SSCCCCCCSCEEECSSTTTCCEEEHHHHSCCCTTTCSCSCSCSSCCCHHHHHCC
T ss_pred CCEEe-ECCCcCCCCCEEEECCccCCccccCEEEccccccccccccCCCCEECCCCCccc
Confidence 45567 898875555555555 699999999984211 1244699997643
No 166
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Probab=23.67 E-value=53 Score=21.41 Aligned_cols=38 Identities=18% Similarity=0.335 Sum_probs=27.4
Q ss_pred ccccccccccccCCeeEEeCCCCccChhhHHHHHhcCCCCccccccccC
Q 024005 210 LTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQQGTCPVCKLRAGS 258 (274)
Q Consensus 210 ~~C~ICLe~~~~~~~v~~lpCgH~FH~~CI~~WL~~~~tCPlCR~~i~~ 258 (274)
..|..|-..+. ++ ....-+..||.+| ..|-.|+.++..
T Consensus 6 ~~C~~C~~~I~-~~--~~~a~~~~~H~~C--------F~C~~C~~~L~~ 43 (66)
T 1nyp_A 6 PICGACRRPIE-GR--VVNAMGKQWHVEH--------FVCAKCEKPFLG 43 (66)
T ss_dssp CEETTTTEECC-SC--EECCTTSBEETTT--------CBCTTTCCBCSS
T ss_pred CCCcccCCEec-ce--EEEECccccccCc--------CEECCCCCCCCC
Confidence 47999988887 43 2334577889887 358889888764
No 167
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=22.92 E-value=35 Score=23.41 Aligned_cols=49 Identities=20% Similarity=0.293 Sum_probs=31.6
Q ss_pred CCcccccccccccccCC-eeEEeCCCCccChhhHHHHH----hcCCCCccccccc
Q 024005 207 EDELTCTVCLEQVNVGE-IVRSLPCLHQFHANCIDPWL----RQQGTCPVCKLRA 256 (274)
Q Consensus 207 ~e~~~C~ICLe~~~~~~-~v~~lpCgH~FH~~CI~~WL----~~~~tCPlCR~~i 256 (274)
++...| ||......++ -+..-.|..-||..|+.--- ...-.||.|+..-
T Consensus 14 ~~~~~C-~C~~~~~~g~~mI~Cd~C~~W~H~~Cvg~~~~~~~~~~~~C~~C~~~~ 67 (72)
T 1wee_A 14 NWKVDC-KCGTKDDDGERMLACDGCGVWHHTRCIGINNADALPSKFLCFRCIELS 67 (72)
T ss_dssp SSEECC-TTCCCSCCSSCEEECSSSCEEEETTTTTCCTTSCCCSCCCCHHHHHHC
T ss_pred CcceEe-eCCCccCCCCcEEECCCCCCccCCeeeccCccccCCCcEECCCccCCC
Confidence 345678 7988765553 44445588889999975321 1234699997643
No 168
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=22.21 E-value=72 Score=21.33 Aligned_cols=42 Identities=21% Similarity=0.421 Sum_probs=28.8
Q ss_pred cccccccccccccCCeeEEeCCCCccChhhHHHHHhcCCCCccccccccCC
Q 024005 209 ELTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQQGTCPVCKLRAGSG 259 (274)
Q Consensus 209 ~~~C~ICLe~~~~~~~v~~lpCgH~FH~~CI~~WL~~~~tCPlCR~~i~~~ 259 (274)
...|.-|-..+...+.+.. .-+..||.+| ..|-.|+.++..+
T Consensus 11 ~~~C~~C~~~I~~~~~~~~-a~~~~~H~~C--------F~C~~C~~~L~~~ 52 (77)
T 1g47_A 11 SATCERCKGGFAPAEKIVN-SNGELYHEQC--------FVCAQCFQQFPEG 52 (77)
T ss_dssp CCBCSSSCCBCCSTTTCEE-ETTEEECTTT--------CCCTTTCCCCGGG
T ss_pred CCCchhcCCccCCCceEEE-eCccEecccc--------CeECCCCCCCCCC
Confidence 4579999998875444322 2467788877 3588888877654
No 169
>1a7i_A QCRP2 (LIM1); LIM domain containing proteins, metal-binding protein, zinc finger; NMR {Coturnix japonica} SCOP: g.39.1.3 g.39.1.3 PDB: 2o10_A
Probab=21.83 E-value=34 Score=23.47 Aligned_cols=40 Identities=30% Similarity=0.486 Sum_probs=26.7
Q ss_pred ccccccccccccCCeeEEeCCCCccChhhHHHHHhcCCCCccccccccCC
Q 024005 210 LTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQQGTCPVCKLRAGSG 259 (274)
Q Consensus 210 ~~C~ICLe~~~~~~~v~~lpCgH~FH~~CI~~WL~~~~tCPlCR~~i~~~ 259 (274)
..|..|-..+..++.+. .-+..||.+|. .|-.|+..+...
T Consensus 8 ~~C~~C~~~I~~~~~~~--a~~~~~H~~CF--------~C~~C~~~L~~~ 47 (81)
T 1a7i_A 8 NKCGACGRTVYHAEEVQ--CDGRSFHRCCF--------LCMVCRKNLDST 47 (81)
T ss_dssp CBCSSSCCBCSSTTEEE--ETTEEEESSSE--------ECSSSCCEECSS
T ss_pred CcCcCcCccccCceeEE--eCCcccccccC--------ccCCCCCCCCCC
Confidence 46888888876555432 25677887773 477787777554
No 170
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=21.65 E-value=69 Score=21.21 Aligned_cols=40 Identities=23% Similarity=0.462 Sum_probs=27.5
Q ss_pred cccccccccccc--CCeeEEeCCCCccChhhHHHHHhcCCCCccccccccC
Q 024005 210 LTCTVCLEQVNV--GEIVRSLPCLHQFHANCIDPWLRQQGTCPVCKLRAGS 258 (274)
Q Consensus 210 ~~C~ICLe~~~~--~~~v~~lpCgH~FH~~CI~~WL~~~~tCPlCR~~i~~ 258 (274)
..|.-|-+.+.. .+.+ ...-+..||.+|. .|-.|+..+..
T Consensus 6 ~~C~~C~~~I~~~~~~~~-~~a~~~~wH~~CF--------~C~~C~~~L~~ 47 (72)
T 1x4l_A 6 SGCAGCTNPISGLGGTKY-ISFEERQWHNDCF--------NCKKCSLSLVG 47 (72)
T ss_dssp CSBTTTTBCCCCSSSCSC-EECSSCEECTTTC--------BCSSSCCBCTT
T ss_pred CCCcCCCccccCCCCcce-EEECCcccCcccC--------EeccCCCcCCC
Confidence 479999888774 2232 2335788998883 68888887753
No 171
>2l3k_A Rhombotin-2, linker, LIM domain-binding protein 1; LMO2(LIM2)-LDB1(LID), chimera, fusion protein, oncoprotein; NMR {Mus musculus} PDB: 2l6y_B 2l6z_C
Probab=21.61 E-value=1.2e+02 Score=22.57 Aligned_cols=37 Identities=19% Similarity=0.363 Sum_probs=26.2
Q ss_pred CCcccccccccccccCCeeEEeCCCCccChhhHHHHHh
Q 024005 207 EDELTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLR 244 (274)
Q Consensus 207 ~e~~~C~ICLe~~~~~~~v~~lpCgH~FH~~CI~~WL~ 244 (274)
.+-..|..|-..+..++.. ...=+..||..|..+.+.
T Consensus 34 ~~CF~C~~C~~~L~~g~~f-~~~~g~~yC~~cy~~~~~ 70 (123)
T 2l3k_A 34 LECFKCAACQKHFSVGDRY-LLINSDIVCEQDIYEWTK 70 (123)
T ss_dssp TTTCBCTTTCCBCCTTCEE-EECSSSEEEGGGHHHHHH
T ss_pred cccCccccCCCCCCCCCcE-EeeCCEEEcHHHhHHHhc
Confidence 3566899998888655443 333577889999888764
No 172
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=21.60 E-value=83 Score=21.50 Aligned_cols=40 Identities=13% Similarity=0.349 Sum_probs=28.7
Q ss_pred cccccccccccccCCeeEEeCCCCccChhhHHHHHhcCCCCccccccccCC
Q 024005 209 ELTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQQGTCPVCKLRAGSG 259 (274)
Q Consensus 209 ~~~C~ICLe~~~~~~~v~~lpCgH~FH~~CI~~WL~~~~tCPlCR~~i~~~ 259 (274)
...|.-|-..+. ++.+ ..-+..||.+| .+|-.|+..+...
T Consensus 15 ~~~C~~C~~~I~-~~~v--~a~~~~~H~~C--------F~C~~C~~~L~~~ 54 (79)
T 2cor_A 15 KYICQKCHAIID-EQPL--IFKNDPYHPDH--------FNCANCGKELTAD 54 (79)
T ss_dssp CCBCTTTCCBCC-SCCC--CCSSSCCCTTT--------SBCSSSCCBCCTT
T ss_pred CCCCccCCCEec-ceEE--EECcceeCCCC--------CEeCCCCCccCCC
Confidence 457999988877 3322 33577889887 4688998888754
No 173
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=20.30 E-value=57 Score=21.53 Aligned_cols=39 Identities=21% Similarity=0.539 Sum_probs=26.1
Q ss_pred ccccccccccccCCeeEEeCCCCccChhhHHHHHhcCCCCccccccccCC
Q 024005 210 LTCTVCLEQVNVGEIVRSLPCLHQFHANCIDPWLRQQGTCPVCKLRAGSG 259 (274)
Q Consensus 210 ~~C~ICLe~~~~~~~v~~lpCgH~FH~~CI~~WL~~~~tCPlCR~~i~~~ 259 (274)
..|..|-+.+. ++.+ ..-+..||.+|. .|-.|+..+...
T Consensus 6 ~~C~~C~~~I~-~~~~--~a~~~~~H~~CF--------~C~~C~~~L~~~ 44 (70)
T 2d8x_A 6 SGCHQCGEFII-GRVI--KAMNNSWHPECF--------RCDLCQEVLADI 44 (70)
T ss_dssp SBCSSSCCBCC-SCCE--EETTEEECTTTS--------BCSSSCCBCSSS
T ss_pred CcCccCCCEec-ceEE--EECcccccccCC--------EeCCCCCcCCCC
Confidence 46888888776 3322 224677888773 588888877654
Done!