BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 024006
(274 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2Q7D|A Chain A, Crystal Structure Of Human Inositol 1,3,4-Trisphosphate
56-Kinase (Itpk1) In Complex With Amppnp And Mn2+
pdb|2Q7D|B Chain B, Crystal Structure Of Human Inositol 1,3,4-Trisphosphate
56-Kinase (Itpk1) In Complex With Amppnp And Mn2+
Length = 346
Score = 99.0 bits (245), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 73/238 (30%), Positives = 109/238 (45%), Gaps = 8/238 (3%)
Query: 27 LEEYRQTHPEVTVLDPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIER-DASS 85
+EY HPE VLDP AI+ L +R + + + ++ P + +
Sbjct: 92 FQEYIDAHPETIVLDPLPAIRTLLDRSKSYELIRKIEAYMEDDRICSPPFMELTSLCGDD 151
Query: 86 IPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKKLEPPLVLQEFVNHGGVLFK 145
++ K GLT P + K VA G+ SHE+++ ++Q L ++PP V+Q F+NH VL+K
Sbjct: 152 TMRLLEKNGLTFPFICKTRVAHGT-NSHEMAIVFNQEGLNAIQPPCVVQNFINHNAVLYK 210
Query: 146 VYIVGEAIKVVRRFSLPDVTKQDLSTSAGVFRFPRVSC--XXXXXXXXXXXPCVAXXXXX 203
V++VGE+ VV+R SL + + + F VS V
Sbjct: 211 VFVVGESYTVVQRPSLKNFSAGTSDRESIFFNSHNVSKPESSSVLTELDKIEGVFERPSD 270
Query: 204 XXXXXXXXXXXXXXGLRLFNLDIIREHGTRDQFYVIDINYFPGYGKMPEYEHIFTDFL 261
G+ LF +DII + T Q VIDIN FPGY + E+ FTD L
Sbjct: 271 EVIRELSRALRQALGVSLFGIDIIINNQT-GQHAVIDINAFPGYEGVSEF---FTDLL 324
>pdb|2QB5|A Chain A, Crystal Structure Of Human Inositol 1,3,4-Trisphosphate
56-Kinase (Itpk1) In Complex With Adp And Mn2+
pdb|2QB5|B Chain B, Crystal Structure Of Human Inositol 1,3,4-Trisphosphate
56-Kinase (Itpk1) In Complex With Adp And Mn2+
Length = 347
Score = 98.6 bits (244), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 73/238 (30%), Positives = 109/238 (45%), Gaps = 8/238 (3%)
Query: 27 LEEYRQTHPEVTVLDPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIER-DASS 85
+EY HPE VLDP AI+ L +R + + + ++ P + +
Sbjct: 93 FQEYIDAHPETIVLDPLPAIRTLLDRSKSYELIRKIEAYMEDDRICSPPFMELTSLCGDD 152
Query: 86 IPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKKLEPPLVLQEFVNHGGVLFK 145
++ K GLT P + K VA G+ SHE+++ ++Q L ++PP V+Q F+NH VL+K
Sbjct: 153 TMRLLEKNGLTFPFICKTRVAHGT-NSHEMAIVFNQEGLNAIQPPCVVQNFINHNAVLYK 211
Query: 146 VYIVGEAIKVVRRFSLPDVTKQDLSTSAGVFRFPRVSC--XXXXXXXXXXXPCVAXXXXX 203
V++VGE+ VV+R SL + + + F VS V
Sbjct: 212 VFVVGESYTVVQRPSLKNFSAGTSDRESIFFNSHNVSKPESSSVLTELDKIEGVFERPSD 271
Query: 204 XXXXXXXXXXXXXXGLRLFNLDIIREHGTRDQFYVIDINYFPGYGKMPEYEHIFTDFL 261
G+ LF +DII + T Q VIDIN FPGY + E+ FTD L
Sbjct: 272 EVIRELSRALRQALGVSLFGIDIIINNQT-GQHAVIDINAFPGYEGVSEF---FTDLL 325
>pdb|2ODT|X Chain X, Structure Of Human Inositol 1,3,4-Trisphosphate 56-Kinase
Length = 328
Score = 98.2 bits (243), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 73/238 (30%), Positives = 107/238 (44%), Gaps = 8/238 (3%)
Query: 27 LEEYRQTHPEVTVLDPPYAIQHLHNRQSMLQCVADMNLSNSYGKV-DVPRQLVIERDASS 85
+EY HPE VLDP AI+ L +R + + + ++ P +
Sbjct: 82 FQEYIDAHPETIVLDPLPAIRTLLDRSKSYELIRKIEAYXEDDRICSPPFXELTSLCGDD 141
Query: 86 IPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKKLEPPLVLQEFVNHGGVLFK 145
++ K GLT P + K VA G+ SHE ++ ++Q L ++PP V+Q F+NH VL+K
Sbjct: 142 TXRLLEKNGLTFPFICKTRVAHGT-NSHEXAIVFNQEGLNAIQPPCVVQNFINHNAVLYK 200
Query: 146 VYIVGEAIKVVRRFSLPDVTKQDLSTSAGVFRFPRVSC--XXXXXXXXXXXPCVAXXXXX 203
V++VGE+ VV+R SL + + + F VS V
Sbjct: 201 VFVVGESYTVVQRPSLKNFSAGTSDRESIFFNSHNVSKPESSSVLTELDKIEGVFERPSD 260
Query: 204 XXXXXXXXXXXXXXGLRLFNLDIIREHGTRDQFYVIDINYFPGYGKMPEYEHIFTDFL 261
G+ LF +DII + T Q VIDIN FPGY + E+ FTD L
Sbjct: 261 EVIRELSRALRQALGVSLFGIDIIINNQT-GQHAVIDINAFPGYEGVSEF---FTDLL 314
>pdb|1Z2N|X Chain X, Inositol 1,3,4-trisphosphate 5/6-kinase Complexed Mg2+/adp
pdb|1Z2O|X Chain X, Inositol 1,3,4-Trisphosphate 56-Kinase In Complex With
Mg2+ADPINS(1,3,4,6)P4
pdb|1Z2P|X Chain X, Inositol 1,3,4-Trisphosphate 56-Kinase In Complex With
Mg2+AMP- PcpINS(1,3,4)P3
Length = 324
Score = 60.8 bits (146), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 51/256 (19%), Positives = 104/256 (40%), Gaps = 25/256 (9%)
Query: 27 LEEYRQTHPEVTVLDPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSI 86
+ +Y + HP+V L+ +H+ S + + + + N+ + +P + + +
Sbjct: 74 MRKYEKDHPKVLFLESSA----IHDMMSSREEINALLIKNN---IPIPNSFSV-KSKEEV 125
Query: 87 PDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKKLEPPLVLQEFVNHGGVLFKV 146
++ L LP + KP A G+ +H++ + +Q + + P + Q ++NH + KV
Sbjct: 126 IQLLQSKQLILPFIVKPENAQGTFNAHQMKIVLEQEGIDDIHFPCLCQHYINHNNKIVKV 185
Query: 147 YIVGEAIKVVRRFSLPDVTK-------------QD-LSTSAGVFRFPRV--SCXXXXXXX 190
+ +G +K R SLP+V + +D LS GV + +
Sbjct: 186 FCIGNTLKWQTRTSLPNVHRCGIKSVDFNNQHLEDILSWPEGVIDKQDIIENSANRFGSK 245
Query: 191 XXXXPCVAXXXXXXXXXXXXXXXXXXXGLRLFNLDIIREHGTRDQFYVIDINYFPGYGKM 250
P + G++L +D I+E+ + V+D+N FP YG
Sbjct: 246 ILEDPILLNLTSEAEMRDLAYKVRCALGVQLCGIDFIKENEQGNPL-VVDVNVFPSYGGK 304
Query: 251 PEYEHIFTDFLLSLTQ 266
+++ L T+
Sbjct: 305 VDFDWFVEKVALCYTE 320
>pdb|3EDY|A Chain A, Crystal Structure Of The Precursor Form Of Human
Tripeptidyl-Peptidase 1
Length = 544
Score = 29.6 bits (65), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 37/140 (26%), Positives = 64/140 (45%), Gaps = 19/140 (13%)
Query: 47 QHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVA 106
Q++ ++Q V+D + S YGK L +E ++ D+V + LTL V K L+A
Sbjct: 37 QNVERLSELVQAVSDPS-SPQYGKY-----LTLE----NVADLVRPSPLTLHTVQKWLLA 86
Query: 107 DGSAKSHELSLAYD----QYSLKKLEPPLVLQEFVNHGGVLFKVYIVGEAIKVVRRFSLP 162
G+ K H + + D S+++ E L EF ++ G + ++V + + LP
Sbjct: 87 AGAQKCHSV-ITQDFLTCWLSIRQAELLLPGAEFHHYVGGPTETHVV----RSPHPYQLP 141
Query: 163 DVTKQDLSTSAGVFRFPRVS 182
+ G+ RFP S
Sbjct: 142 QALAPHVDFVGGLHRFPPTS 161
>pdb|3EE6|A Chain A, Crystal Structure Analysis Of Tripeptidyl Peptidase -I
pdb|3EE6|B Chain B, Crystal Structure Analysis Of Tripeptidyl Peptidase -I
Length = 571
Score = 29.3 bits (64), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 37/140 (26%), Positives = 64/140 (45%), Gaps = 19/140 (13%)
Query: 47 QHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVA 106
Q++ ++Q V+D + S YGK L +E ++ D+V + LTL V K L+A
Sbjct: 56 QNVERLSELVQAVSDPS-SPQYGKY-----LTLE----NVADLVRPSPLTLHTVQKWLLA 105
Query: 107 DGSAKSHELSLAYD----QYSLKKLEPPLVLQEFVNHGGVLFKVYIVGEAIKVVRRFSLP 162
G+ K H + + D S+++ E L EF ++ G + ++V + + LP
Sbjct: 106 AGAQKCHSV-ITQDFLTCWLSIRQAELLLPGAEFHHYVGGPTETHVV----RSPHPYQLP 160
Query: 163 DVTKQDLSTSAGVFRFPRVS 182
+ G+ RFP S
Sbjct: 161 QALAPHVDFVGGLHRFPPTS 180
>pdb|1LLW|A Chain A, Structural Studies On The Synchronization Of Catalytic
Centers In Glutamate Synthase: Complex With
2-Oxoglutarate
pdb|1LLZ|A Chain A, Structural Studies On The Synchronization Of Catalytic
Centers In Glutamate Synthase: Reduced Enzyme
pdb|1LM1|A Chain A, Structural Studies On The Synchronization Of Catalytic
Centers In Glutamate Synthase: Native Enzyme
pdb|1OFD|A Chain A, Glutamate Synthase From Synechocystis Sp In Complex With
2-Oxoglutarate At 2.0 Angstrom Resolution
pdb|1OFD|B Chain B, Glutamate Synthase From Synechocystis Sp In Complex With
2-Oxoglutarate At 2.0 Angstrom Resolution
pdb|1OFE|A Chain A, Glutamate Synthase From Synechocystis Sp In Complex With
2-Oxoglutarate And L-Don At 2.45 Angstrom Resolution
pdb|1OFE|B Chain B, Glutamate Synthase From Synechocystis Sp In Complex With
2-Oxoglutarate And L-Don At 2.45 Angstrom Resolution
Length = 1520
Score = 29.3 bits (64), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 29/119 (24%), Positives = 54/119 (45%), Gaps = 3/119 (2%)
Query: 17 QLTGKEWRQILEEYRQTHPEVTVLDPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQ 76
QL GK+ + + R++ P VT++ PP +++ + + Q + D++ N +V V +
Sbjct: 978 QLPGKKVSEYIAMLRRSKPGVTLISPP-PHHDIYSIEDLAQLIYDLHQINPEAQVSV--K 1034
Query: 77 LVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKKLEPPLVLQE 135
LV E +I V KA + ++ G++ + A + L E VL E
Sbjct: 1035 LVAEIGIGTIAAGVAKANADIIQISGHDGGTGASPLSSIKHAGSPWELGVTEVHRVLME 1093
>pdb|2EXU|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae
Transcription Elongation Factors Spt4-Spt5ngn Domain
Length = 200
Score = 29.3 bits (64), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 11/35 (31%), Positives = 22/35 (62%)
Query: 71 VDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLV 105
++ P+Q VIE+ + +PD+ + L +P+ PL+
Sbjct: 154 IEAPKQSVIEKFCNGVPDIYISQKLLIPVQELPLL 188
>pdb|1YZ4|A Chain A, Crystal Structure Of Dusp15
pdb|1YZ4|B Chain B, Crystal Structure Of Dusp15
Length = 160
Score = 28.5 bits (62), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 10/30 (33%), Positives = 18/30 (60%)
Query: 6 RTFVVSFSFLMQLTGKEWRQILEEYRQTHP 35
R+ + +++M +TG WR +LE + T P
Sbjct: 97 RSTTIVTAYVMTVTGLGWRDVLEAIKATRP 126
>pdb|1CNZ|A Chain A, 3-Isopropylmalate Dehydrogenase (Ipmdh) From Salmonella
Typhimurium
pdb|1CNZ|B Chain B, 3-Isopropylmalate Dehydrogenase (Ipmdh) From Salmonella
Typhimurium
Length = 363
Score = 28.5 bits (62), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 27/131 (20%), Positives = 56/131 (42%), Gaps = 23/131 (17%)
Query: 23 WRQILEEYRQTHPEVTVLDPPYAIQHLHNRQSMLQCVAD------MNLSNSYGKVDVPRQ 76
WR+I+ + +T+P+V + H++ + +Q + D + SN +G +
Sbjct: 205 WREIVNDVAKTYPDVE-------LAHMYIDNATMQLIKDPSQFDVLLCSNLFGDILSDEC 257
Query: 77 LVIERDASSIPDVVLK---------AGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKKL 127
+I +P L AG + P +A +A+ A+ L+L +YSL
Sbjct: 258 AMITGSMGMLPSASLNEQGFGLYEPAGGSAPDIAGKNIANPIAQILSLALLL-RYSLDAN 316
Query: 128 EPPLVLQEFVN 138
+ +++ +N
Sbjct: 317 DAATAIEQAIN 327
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.139 0.414
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,148,278
Number of Sequences: 62578
Number of extensions: 260420
Number of successful extensions: 672
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 656
Number of HSP's gapped (non-prelim): 17
length of query: 274
length of database: 14,973,337
effective HSP length: 97
effective length of query: 177
effective length of database: 8,903,271
effective search space: 1575878967
effective search space used: 1575878967
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 51 (24.3 bits)