Query 024006
Match_columns 274
No_of_seqs 153 out of 415
Neff 6.9
Searched_HMMs 46136
Date Fri Mar 29 08:14:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024006.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024006hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF05770 Ins134_P3_kin: Inosit 100.0 1.4E-71 2.9E-76 510.1 24.1 251 13-263 55-307 (307)
2 PLN02941 inositol-tetrakisphos 100.0 5.9E-64 1.3E-68 464.8 29.3 257 13-269 69-328 (328)
3 PF08443 RimK: RimK-like ATP-g 100.0 2.2E-27 4.8E-32 205.0 14.9 168 50-253 2-177 (190)
4 COG0189 RimK Glutathione synth 99.9 2.2E-26 4.8E-31 213.6 20.3 196 35-266 103-316 (318)
5 PRK10446 ribosomal protein S6 99.9 4.7E-26 1E-30 209.5 21.8 205 28-269 77-294 (300)
6 TIGR02144 LysX_arch Lysine bio 99.9 7.6E-25 1.7E-29 198.3 22.6 198 29-266 66-280 (280)
7 TIGR00768 rimK_fam alpha-L-glu 99.9 1E-22 2.3E-27 183.1 22.1 189 26-252 64-263 (277)
8 TIGR03103 trio_acet_GNAT GNAT- 99.9 9.9E-21 2.2E-25 187.4 22.0 189 39-251 285-528 (547)
9 PRK14570 D-alanyl-alanine synt 99.9 9.1E-21 2E-25 179.2 19.9 213 12-253 92-324 (364)
10 PRK01372 ddl D-alanine--D-alan 99.9 2.9E-20 6.2E-25 170.5 21.4 194 26-252 73-277 (304)
11 TIGR01205 D_ala_D_alaTIGR D-al 99.9 1.7E-19 3.6E-24 166.1 22.7 197 26-252 80-292 (315)
12 TIGR01380 glut_syn glutathione 99.8 7.4E-20 1.6E-24 169.6 18.0 195 26-267 99-310 (312)
13 PRK14572 D-alanyl-alanine synt 99.8 1.8E-19 3.9E-24 169.2 20.0 214 12-254 93-324 (347)
14 PF07478 Dala_Dala_lig_C: D-al 99.8 3.4E-20 7.3E-25 162.2 13.4 164 70-255 6-185 (203)
15 PRK12458 glutathione synthetas 99.8 2.3E-19 5.1E-24 168.1 20.0 190 35-268 113-328 (338)
16 PRK01966 ddl D-alanyl-alanine 99.8 5E-19 1.1E-23 165.3 21.8 211 12-253 86-309 (333)
17 PRK14569 D-alanyl-alanine synt 99.8 4.3E-19 9.3E-24 163.2 20.3 204 12-254 61-274 (296)
18 PRK05246 glutathione synthetas 99.8 1.8E-19 3.9E-24 167.2 17.7 194 26-266 100-314 (316)
19 PRK14568 vanB D-alanine--D-lac 99.8 3.5E-19 7.6E-24 166.9 19.3 208 11-253 94-318 (343)
20 PRK14571 D-alanyl-alanine synt 99.8 1.2E-18 2.6E-23 160.0 22.0 190 26-254 70-274 (299)
21 PRK14016 cyanophycin synthetas 99.8 2.5E-19 5.4E-24 182.7 18.7 189 40-251 203-453 (727)
22 TIGR02068 cya_phycin_syn cyano 99.8 3.4E-18 7.4E-23 177.3 20.8 187 41-250 203-451 (864)
23 TIGR02291 rimK_rel_E_lig alpha 99.8 5.6E-18 1.2E-22 156.9 19.8 194 40-248 26-273 (317)
24 KOG1057 Arp2/3 complex-interac 99.8 2E-19 4.4E-24 177.3 10.6 203 24-263 104-341 (1018)
25 PRK02471 bifunctional glutamat 99.8 8.2E-18 1.8E-22 171.7 21.5 200 37-250 474-731 (752)
26 TIGR01435 glu_cys_lig_rel glut 99.8 2.9E-17 6.4E-22 166.2 21.3 194 41-249 465-716 (737)
27 COG1181 DdlA D-alanine-D-alani 99.8 6.2E-17 1.3E-21 150.3 19.0 220 8-254 62-295 (317)
28 PRK14573 bifunctional D-alanyl 99.8 1.3E-16 2.8E-21 164.7 22.7 218 10-253 529-764 (809)
29 PF13535 ATP-grasp_4: ATP-gras 99.7 6.7E-16 1.5E-20 130.2 14.6 165 48-246 1-180 (184)
30 TIGR01161 purK phosphoribosyla 99.7 5.6E-15 1.2E-19 138.7 19.6 178 36-249 83-269 (352)
31 PRK12767 carbamoyl phosphate s 99.7 1.1E-14 2.4E-19 134.5 20.2 166 38-246 98-271 (326)
32 PRK06019 phosphoribosylaminoim 99.7 4E-15 8.8E-20 140.9 16.9 184 29-250 80-272 (372)
33 TIGR01142 purT phosphoribosylg 99.6 1.1E-14 2.4E-19 137.5 17.8 179 36-252 85-279 (380)
34 PLN02948 phosphoribosylaminoim 99.6 3.8E-14 8.3E-19 141.4 18.6 179 36-250 106-295 (577)
35 PRK06849 hypothetical protein; 99.6 8.5E-14 1.9E-18 132.3 19.6 169 38-246 103-277 (389)
36 PRK07206 hypothetical protein; 99.6 2.2E-13 4.7E-18 130.3 19.3 185 31-252 88-295 (416)
37 PRK05586 biotin carboxylase; V 99.6 1.5E-13 3.2E-18 133.2 17.9 178 36-248 99-296 (447)
38 PRK09288 purT phosphoribosylgl 99.5 2.6E-13 5.5E-18 128.9 17.1 179 36-252 98-292 (395)
39 PRK06524 biotin carboxylase-li 99.5 4E-13 8.7E-18 130.6 18.6 193 25-247 116-325 (493)
40 PRK12833 acetyl-CoA carboxylas 99.5 2.9E-13 6.2E-18 132.0 17.0 177 36-248 102-299 (467)
41 PRK08462 biotin carboxylase; V 99.5 8E-13 1.7E-17 127.9 18.6 184 27-248 93-298 (445)
42 TIGR01369 CPSaseII_lrg carbamo 99.5 8.4E-13 1.8E-17 139.9 20.1 174 36-246 653-842 (1050)
43 PRK05294 carB carbamoyl phosph 99.5 1.7E-12 3.6E-17 137.9 21.2 183 26-246 644-842 (1066)
44 PRK13790 phosphoribosylamine-- 99.5 3E-12 6.4E-17 121.8 20.7 193 23-247 39-252 (379)
45 PRK08654 pyruvate carboxylase 99.5 1.5E-12 3.2E-17 128.0 17.8 183 28-248 92-295 (499)
46 PF02655 ATP-grasp_3: ATP-gras 99.5 2.5E-13 5.4E-18 114.4 10.1 152 49-246 1-159 (161)
47 PRK08591 acetyl-CoA carboxylas 99.5 2E-12 4.4E-17 125.1 17.8 185 28-248 92-296 (451)
48 PLN02735 carbamoyl-phosphate s 99.5 2.1E-12 4.6E-17 137.1 19.0 188 25-246 667-877 (1102)
49 TIGR00514 accC acetyl-CoA carb 99.5 3.2E-12 6.9E-17 123.9 17.9 178 36-248 99-296 (449)
50 PRK08463 acetyl-CoA carboxylas 99.5 4.6E-12 9.9E-17 124.0 19.0 184 28-248 91-296 (478)
51 PRK07178 pyruvate carboxylase 99.5 2.3E-12 5E-17 125.8 16.5 185 27-248 90-295 (472)
52 PRK02186 argininosuccinate lya 99.4 4E-12 8.6E-17 132.8 18.3 171 41-249 97-281 (887)
53 PRK06111 acetyl-CoA carboxylas 99.4 1.2E-11 2.7E-16 119.4 18.3 177 36-247 99-295 (450)
54 TIGR01235 pyruv_carbox pyruvat 99.4 6.9E-12 1.5E-16 133.1 17.6 177 36-248 99-296 (1143)
55 PRK12815 carB carbamoyl phosph 99.4 1.3E-11 2.7E-16 131.2 19.4 175 35-246 653-840 (1068)
56 PRK00885 phosphoribosylamine-- 99.4 2.3E-11 4.9E-16 116.9 19.0 111 25-151 76-200 (420)
57 PLN02257 phosphoribosylamine-- 99.4 4.8E-11 1E-15 115.5 21.0 215 22-268 73-317 (434)
58 TIGR01369 CPSaseII_lrg carbamo 99.4 2.1E-11 4.6E-16 129.3 17.8 179 36-247 111-304 (1050)
59 PLN02735 carbamoyl-phosphate s 99.4 2.2E-11 4.7E-16 129.5 17.8 178 36-246 128-322 (1102)
60 PRK05294 carB carbamoyl phosph 99.4 2.1E-11 4.5E-16 129.6 17.5 176 36-246 112-305 (1066)
61 TIGR00877 purD phosphoribosyla 99.3 8.7E-11 1.9E-15 112.8 18.2 189 25-248 78-293 (423)
62 PRK13789 phosphoribosylamine-- 99.3 2.9E-10 6.2E-15 109.9 19.9 209 25-267 82-321 (426)
63 PRK12999 pyruvate carboxylase; 99.3 8.2E-11 1.8E-15 125.3 17.4 175 36-247 103-299 (1146)
64 PF15632 ATPgrasp_Ter: ATP-gra 99.3 4.3E-10 9.3E-15 105.0 19.4 169 26-246 82-282 (329)
65 COG0439 AccC Biotin carboxylas 99.3 9.3E-11 2E-15 113.4 15.1 184 26-246 90-294 (449)
66 PRK12815 carB carbamoyl phosph 99.3 1.3E-10 2.8E-15 123.5 17.5 182 36-252 112-308 (1068)
67 TIGR02712 urea_carbox urea car 99.2 3.6E-10 7.7E-15 121.1 18.6 177 36-248 98-295 (1201)
68 PF02786 CPSase_L_D2: Carbamoy 99.2 2E-10 4.4E-15 101.1 12.1 161 51-246 1-181 (211)
69 PF02750 Synapsin_C: Synapsin, 99.2 5.9E-10 1.3E-14 95.8 14.1 165 41-244 1-177 (203)
70 PRK06395 phosphoribosylamine-- 99.2 3E-09 6.5E-14 103.1 19.8 201 36-267 89-319 (435)
71 COG0458 CarB Carbamoylphosphat 99.2 8.1E-10 1.8E-14 104.4 15.3 178 38-246 103-291 (400)
72 PF02955 GSH-S_ATP: Prokaryoti 99.1 3E-10 6.6E-15 97.0 10.6 138 72-244 11-161 (173)
73 COG1821 Predicted ATP-utilizin 99.0 4E-09 8.7E-14 94.1 13.1 165 43-263 106-277 (307)
74 PF02222 ATP-grasp: ATP-grasp 99.0 2.1E-09 4.4E-14 91.9 9.2 152 70-249 5-165 (172)
75 COG0027 PurT Formate-dependent 99.0 1.4E-08 3.1E-13 93.0 14.7 188 25-252 89-292 (394)
76 PF14398 ATPgrasp_YheCD: YheC/ 99.0 2.2E-08 4.7E-13 91.0 15.5 192 31-253 3-241 (262)
77 PRK13278 purP 5-formaminoimida 98.9 1.5E-07 3.2E-12 89.1 19.3 195 37-267 109-350 (358)
78 PRK05784 phosphoribosylamine-- 98.9 1.2E-07 2.7E-12 93.1 18.5 110 25-151 83-217 (486)
79 PF14397 ATPgrasp_ST: Sugar-tr 98.8 1.3E-06 2.9E-11 80.3 22.4 195 41-250 16-265 (285)
80 COG2232 Predicted ATP-dependen 98.8 4.1E-08 8.9E-13 90.5 11.8 159 41-245 111-274 (389)
81 COG3919 Predicted ATP-grasp en 98.8 7.8E-08 1.7E-12 87.7 11.0 171 39-246 102-289 (415)
82 PRK13277 5-formaminoimidazole- 98.7 2.7E-07 5.9E-12 87.0 15.0 164 50-246 125-320 (366)
83 COG0026 PurK Phosphoribosylami 98.6 1.5E-06 3.3E-11 81.7 16.6 185 27-250 77-272 (375)
84 KOG0238 3-Methylcrotonyl-CoA c 98.6 1.1E-06 2.5E-11 85.0 15.0 174 36-245 95-289 (670)
85 PF03133 TTL: Tubulin-tyrosine 98.6 7.3E-08 1.6E-12 88.3 5.8 74 72-149 42-125 (292)
86 COG4770 Acetyl/propionyl-CoA c 98.5 1E-06 2.2E-11 86.3 12.5 175 35-245 98-293 (645)
87 COG1038 PycA Pyruvate carboxyl 98.4 2E-06 4.4E-11 87.0 12.0 174 35-244 104-298 (1149)
88 KOG3895 Synaptic vesicle prote 98.4 6.9E-07 1.5E-11 83.0 7.1 224 5-265 151-390 (488)
89 PF01071 GARS_A: Phosphoribosy 98.2 2.8E-06 6.1E-11 73.9 7.0 77 70-154 14-106 (194)
90 KOG0369 Pyruvate carboxylase [ 98.1 3.3E-05 7.1E-10 77.2 11.7 174 35-245 130-325 (1176)
91 COG0151 PurD Phosphoribosylami 97.9 0.00056 1.2E-08 65.5 15.6 180 69-268 114-316 (428)
92 PF14305 ATPgrasp_TupA: TupA-l 97.8 0.0043 9.3E-08 55.7 18.6 187 42-257 11-230 (239)
93 KOG0370 Multifunctional pyrimi 97.6 0.00025 5.4E-09 73.3 8.6 179 41-252 1023-1217(1435)
94 TIGR01016 sucCoAbeta succinyl- 97.3 0.0009 2E-08 63.9 8.3 90 53-153 6-117 (386)
95 KOG2156 Tubulin-tyrosine ligas 97.2 0.00064 1.4E-08 66.4 6.1 73 72-149 282-360 (662)
96 PRK00696 sucC succinyl-CoA syn 97.0 0.0025 5.5E-08 60.9 8.0 93 51-154 4-118 (388)
97 PF14243 DUF4343: Domain of un 96.0 0.3 6.5E-06 39.8 13.1 109 98-246 3-117 (130)
98 KOG0368 Acetyl-CoA carboxylase 95.8 0.17 3.7E-06 55.3 13.4 195 26-244 153-376 (2196)
99 PF13549 ATP-grasp_5: ATP-gras 95.4 0.015 3.2E-07 51.8 3.4 93 49-152 9-121 (222)
100 PF08442 ATP-grasp_2: ATP-gras 93.5 0.23 5E-06 43.5 6.5 82 54-144 6-108 (202)
101 PF14403 CP_ATPgrasp_2: Circul 93.5 0.27 5.8E-06 48.1 7.5 106 24-139 258-385 (445)
102 PF07065 D123: D123; InterPro 93.2 0.42 9.1E-06 44.4 8.1 92 131-251 152-245 (299)
103 KOG2157 Predicted tubulin-tyro 92.5 0.12 2.7E-06 51.1 3.7 56 94-152 197-270 (497)
104 PRK14046 malate--CoA ligase su 89.4 1.5 3.3E-05 42.2 7.9 88 54-152 7-116 (392)
105 COG1759 5-formaminoimidazole-4 87.8 0.77 1.7E-05 43.0 4.4 66 51-138 124-203 (361)
106 KOG2158 Tubulin-tyrosine ligas 86.9 0.43 9.2E-06 46.6 2.3 74 72-151 204-284 (565)
107 COG0045 SucC Succinyl-CoA synt 86.6 2.8 6.1E-05 40.2 7.5 87 54-149 7-111 (387)
108 KOG0237 Glycinamide ribonucleo 82.7 36 0.00078 34.8 13.4 78 69-153 119-209 (788)
109 PHA02117 glutathionylspermidin 81.4 5.8 0.00013 38.4 7.5 114 35-161 256-380 (397)
110 PLN02235 ATP citrate (pro-S)-l 72.9 11 0.00025 36.7 6.8 71 69-140 23-114 (423)
111 COG0754 Gsp Glutathionylspermi 70.4 8.8 0.00019 36.6 5.2 121 17-156 231-364 (387)
112 PLN00124 succinyl-CoA ligase [ 65.0 9.5 0.00021 37.2 4.5 62 53-125 33-105 (422)
113 PRK10507 bifunctional glutathi 55.9 29 0.00063 35.6 6.3 107 35-160 482-600 (619)
114 PF04174 CP_ATPgrasp_1: A circ 53.2 14 0.0003 34.9 3.3 27 218-246 67-93 (330)
115 COG1181 DdlA D-alanine-D-alani 51.5 1.5 3.2E-05 41.1 -3.5 110 36-160 36-159 (317)
116 KOG2157 Predicted tubulin-tyro 48.3 23 0.0005 35.3 4.1 38 219-258 377-414 (497)
117 PF14972 Mito_morph_reg: Mitoc 46.0 30 0.00065 29.3 3.8 34 11-44 3-41 (165)
118 PF01725 Ham1p_like: Ham1 fami 41.7 29 0.00062 29.9 3.3 57 204-268 47-108 (189)
119 KOG2983 Uncharacterized conser 41.0 1.2E+02 0.0025 28.1 7.0 86 131-249 165-256 (334)
120 PF04556 DpnII: DpnII restrict 37.7 48 0.001 30.7 4.2 34 211-246 179-218 (286)
121 PF10306 FLILHELTA: Hypothetic 37.1 5 0.00011 30.4 -1.9 15 7-21 23-37 (86)
122 PF07533 BRK: BRK domain; Int 33.8 14 0.00031 24.6 0.1 27 13-39 9-42 (46)
123 COG1222 RPT1 ATP-dependent 26S 33.0 26 0.00056 33.7 1.7 58 3-62 212-282 (406)
124 PF12058 DUF3539: Protein of u 31.9 29 0.00064 26.3 1.5 19 134-152 3-23 (88)
125 TIGR02049 gshA_ferroox glutama 31.3 1.5E+02 0.0033 28.6 6.4 59 98-159 258-340 (403)
126 PRK14676 hypothetical protein; 29.9 2.8E+02 0.0061 22.0 7.3 63 205-269 12-88 (117)
127 KOG0370 Multifunctional pyrimi 29.0 20 0.00043 38.6 0.2 172 42-245 489-671 (1435)
128 PRK14686 hypothetical protein; 28.1 3E+02 0.0066 21.8 7.1 62 205-268 10-87 (119)
129 COG5573 Predicted nucleic-acid 25.9 40 0.00086 27.7 1.4 24 222-246 112-140 (142)
130 PRK14681 hypothetical protein; 25.6 1.8E+02 0.004 24.5 5.4 63 205-268 48-126 (158)
131 PRK14679 hypothetical protein; 24.7 1.6E+02 0.0035 23.8 4.8 63 205-269 20-96 (128)
132 PRK14680 hypothetical protein; 24.5 1.5E+02 0.0034 24.1 4.7 62 205-268 11-88 (134)
133 PF08886 GshA: Glutamate-cyste 24.5 1.6E+02 0.0035 28.5 5.4 47 220-269 26-74 (404)
134 PF00764 Arginosuc_synth: Argi 24.2 1.4E+02 0.0029 29.0 4.9 57 11-76 106-164 (388)
135 PF07805 HipA_N: HipA-like N-t 24.0 2.4E+02 0.0052 20.2 5.3 36 203-240 42-77 (81)
136 KOG0726 26S proteasome regulat 22.5 44 0.00096 31.5 1.2 59 2-62 245-316 (440)
137 PRK14685 hypothetical protein; 22.3 1.8E+02 0.004 25.0 4.8 59 205-265 47-121 (177)
138 PF11039 DUF2824: Protein of u 22.1 2.1E+02 0.0045 23.7 4.8 43 218-267 46-90 (151)
139 PRK12497 hypothetical protein; 22.0 1.8E+02 0.0039 23.0 4.6 62 205-268 11-88 (119)
140 PHA02117 glutathionylspermidin 21.4 1.6E+02 0.0034 28.6 4.8 23 219-243 105-128 (397)
141 PF08886 GshA: Glutamate-cyste 21.1 2.9E+02 0.0063 26.8 6.3 59 98-159 261-343 (404)
142 TIGR01956 NusG_myco NusG famil 20.6 2E+02 0.0042 26.3 4.9 62 204-269 13-108 (258)
143 TIGR00252 conserved hypothetic 20.5 2.3E+02 0.0049 22.6 4.8 62 205-268 11-88 (119)
No 1
>PF05770 Ins134_P3_kin: Inositol 1, 3, 4-trisphosphate 5/6-kinase; InterPro: IPR008656 This entry represents inositol-tetrakisphosphate 1-kinase which is also called inositol 1,3,4-trisphosphate 5/6-kinase. Inositol-tetrakisphosphate 1-kinase can phosphorylate various inositol polyphosphate such as Ins(3,4,5,6)P4 or Ins(1,3,4)P3. This enzyme phosphorylates Ins(3,4,5,6)P4 at position 1 to form Ins(1,3,4,5,6)P5. This reaction is thought to have regulatory importance, since Ins(3,4,5,6)P4 is an inhibitor of plasma membrane Ca(2+)-activated Cl(-) channels, while Ins(1,3,4,5,6)P5 is not. It also phosphorylates Ins(1,3,4)P3 on O-5 and O-6 to form Ins(1,3,4,6)P4, an essential molecule in the hexakisphosphate (InsP6) pathway [, , , , ].; GO: 0000287 magnesium ion binding, 0005524 ATP binding, 0047325 inositol tetrakisphosphate 1-kinase activity, 0052725 inositol-1,3,4-trisphosphate 6-kinase activity, 0052726 inositol-1,3,4-trisphosphate 5-kinase activity, 0032957 inositol trisphosphate metabolic process, 0005622 intracellular; PDB: 1Z2P_X 1Z2O_X 1Z2N_X 2Q7D_A 2QB5_B 2ODT_X.
Probab=100.00 E-value=1.4e-71 Score=510.14 Aligned_cols=251 Identities=53% Similarity=0.933 Sum_probs=205.0
Q ss_pred eeeeccCcHHHHHHHHHHHHhCCCcEEeCcHHHHHHhcCHHHHHHHHHhccccCCCCCccCCCEEEEecCCCChhHHHHh
Q 024006 13 SFLMQLTGKEWRQILEEYRQTHPEVTVLDPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLK 92 (274)
Q Consensus 13 ~ilHK~~~~~~~~~l~~y~~~~P~v~Vidp~~ai~~l~dR~~~~~~L~~~~~~~~~~~I~~P~~~~~~~~~~~~~~~l~~ 92 (274)
+||||+||..|++++|+|.++||+++||||+++++.++||.+|++.|.++.......+|++|+++++.++.+++.+.+++
T Consensus 55 vIlHKltd~~~~~~l~~y~~~hP~v~viDp~~~i~~l~dR~~~~~~l~~l~~~~~~~~i~~P~~v~i~~~~~~~~~~l~~ 134 (307)
T PF05770_consen 55 VILHKLTDEDWVQQLEEYIKKHPEVVVIDPPDAIRPLLDRQSMLQVLSELELSEGDGRIRVPKFVVINSDAESLPELLKE 134 (307)
T ss_dssp EEEE--CHCHHHHHHHHHHHH-TTSEEET-HHHHHHHCCHHCCHHHHHHHHHHHTCTTEE-S-EEEESSSHCCHHHHHHC
T ss_pred EEEEeCCCHHHHHHHHHHHHHCCCeEEEcCHHHHHHHHCHHHHHHHHHHhhccccCCcccCCceEEEcCCHHHHHHHHHH
Confidence 79999999999999999999999999999999999999999999999987655556689999999997666778888899
Q ss_pred cCCCCcEEEeeCcCCCCccceeeEEEeChhhHhccCCCeEEEecccCCCeEEEEEEECCEEEEEEEecCCCCcccccccC
Q 024006 93 AGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKKLEPPLVLQEFVNHGGVLFKVYIVGEAIKVVRRFSLPDVTKQDLSTS 172 (274)
Q Consensus 93 ~~l~~P~VvKp~~a~Gs~~sh~m~iv~~~~~l~~l~~p~vvQefI~h~g~~~KV~VIG~~v~~~~R~S~p~~~~~~~~~~ 172 (274)
++++||+||||+.||||++||.|+||+++++|+++++|+++||||||+|++||||||||+++++.|+|+||++.++....
T Consensus 135 agL~fPlI~KPlvA~Gsa~SH~Maivf~~~gL~~L~~P~VlQeFVNHggvLfKVyVvGd~v~~v~R~SLpn~~~~~~~~~ 214 (307)
T PF05770_consen 135 AGLKFPLICKPLVACGSADSHKMAIVFNEEGLKDLKPPCVLQEFVNHGGVLFKVYVVGDKVFVVKRPSLPNVSSGKLDRE 214 (307)
T ss_dssp TTS-SSEEEEESB-SSTSCCCEEEEE-SGGGGTT--SSEEEEE----TTEEEEEEEETTEEEEEEEE------SSS-TCG
T ss_pred CCCcccEEeeehhhcCCccceEEEEEECHHHHhhcCCCEEEEEeecCCCEEEEEEEecCEEEEEECCCCCCCCccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999988776666
Q ss_pred CceeeecCcccccccCCcCCCC--ccccCCCChHHHHHHHHHHHHHhCCceeEEeEEEeCCCCCeEEEEeccCCCCCCCc
Q 024006 173 AGVFRFPRVSCAAASADDADLD--PCVAELPPRPLLERLAKELRRQLGLRLFNLDIIREHGTRDQFYVIDINYFPGYGKM 250 (274)
Q Consensus 173 ~g~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~lA~~~~~~lGl~l~G~Dvi~~~~~g~~~~ViDVN~fPg~~g~ 250 (274)
.+.|+|+++++.++.+....++ ++..++|+.+.++++|.++|++|||+|||||+|++++|+++|+||||||||||+|+
T Consensus 215 ~~~f~~~~vs~~~~~~~~~~~d~~~~~~~~p~~~~v~~la~~LR~~lgL~LFgfDvI~~~~t~~~~~VIDINyFPgY~~v 294 (307)
T PF05770_consen 215 EIFFDFHQVSKLESSSDLSDLDKDPSQVEMPPDELVEKLAKELRRALGLTLFGFDVIRENGTGGRYYVIDINYFPGYKKV 294 (307)
T ss_dssp GCCCEGGGTCSTTTSSGGGSBSS-TTTTTS--HHHHHHHHHHHHHHHT-SEEEEEEEEGCCT-SSEEEEEEEES--TTTS
T ss_pred ccceeccccCCccccCchhhcccCcccccCCCHHHHHHHHHHHHHHhCcceeeeEEEEEcCCCCcEEEEEeccCCCccCC
Confidence 7889999999888776665555 55567888899999999999999999999999999998448999999999999999
Q ss_pred ccchHHHHHHHHH
Q 024006 251 PEYEHIFTDFLLS 263 (274)
Q Consensus 251 ~~~~~~l~~~l~~ 263 (274)
|+|+++|+++|++
T Consensus 295 p~f~~~l~~~~~~ 307 (307)
T PF05770_consen 295 PDFESVLTDFILD 307 (307)
T ss_dssp CTHHHHHHHHHH-
T ss_pred CChHHHHHHHhhC
Confidence 9999999999974
No 2
>PLN02941 inositol-tetrakisphosphate 1-kinase
Probab=100.00 E-value=5.9e-64 Score=464.79 Aligned_cols=257 Identities=74% Similarity=1.180 Sum_probs=229.6
Q ss_pred eeeeccCcHHHHHHHHHHHHhCCCcEEeCcHHHHHHhcCHHHHHHHHHhccccCCCCCccCCCEEEEecCCCChhHHHHh
Q 024006 13 SFLMQLTGKEWRQILEEYRQTHPEVTVLDPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLK 92 (274)
Q Consensus 13 ~ilHK~~~~~~~~~l~~y~~~~P~v~Vidp~~ai~~l~dR~~~~~~L~~~~~~~~~~~I~~P~~~~~~~~~~~~~~~l~~ 92 (274)
+||||++++.|++.+++|.++||+++||||+++|+.++||+.|++.|+++++..+..+|++|+|+++.+.+.++....+.
T Consensus 69 vilhK~~~~~~~~~~~~~~~e~pgv~vidp~~ai~~~~dR~~~~~~L~~~~~~~~~~~i~~P~t~v~~~~~~al~~~~~~ 148 (328)
T PLN02941 69 VILHKLYGKEWRQQLEEYREKHPDVTVLDPPDAIQRLHNRQSMLQVVADLKLSDGYGSVGVPKQLVVYDDESSIPDAVAL 148 (328)
T ss_pred EEEEecCCHHHHHHHHHHHHHCCCcEEECCHHHHHHHHHHHHHHHHHHHcCCcccCCCCCCCCEEEEcCHHHHHHHHHHH
Confidence 79999999999999999999999999999999999999999999999998877777789999999996544334444567
Q ss_pred cCCCCcEEEeeCcCCCCccceeeEEEeChhhHhccCCCeEEEecccCCCeEEEEEEECCEEEEEEEecCCCCcccccccC
Q 024006 93 AGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKKLEPPLVLQEFVNHGGVLFKVYIVGEAIKVVRRFSLPDVTKQDLSTS 172 (274)
Q Consensus 93 ~~l~~P~VvKp~~a~Gs~~sh~m~iv~~~~~l~~l~~p~vvQefI~h~g~~~KV~VIG~~v~~~~R~S~p~~~~~~~~~~ 172 (274)
++++||+|+||+.||||++||+|++++++++|..++.|+++||||||+|+|||||||||++.++.|+|+|||+.++..+.
T Consensus 149 ~~l~~P~V~KPl~g~Gss~gh~m~lv~~~~~L~~l~~p~~lQEfVnh~g~d~RVfVvGd~v~~~~R~S~~n~~~~~~n~~ 228 (328)
T PLN02941 149 AGLKFPLVAKPLVADGSAKSHKMSLAYDQEGLSKLEPPLVLQEFVNHGGVLFKVYVVGDYVKCVRRFSLPDVSEEELSSA 228 (328)
T ss_pred hcCCCCEEEeecccCCCccccceEEecCHHHHHhcCCcEEEEEecCCCCEEEEEEEECCEEEEEEecCCccccccccccc
Confidence 89999999999999999999999999999999999999999999999999999999999998889999999985433345
Q ss_pred CceeeecCcccccccCCcCC---CCccccCCCChHHHHHHHHHHHHHhCCceeEEeEEEeCCCCCeEEEEeccCCCCCCC
Q 024006 173 AGVFRFPRVSCAAASADDAD---LDPCVAELPPRPLLERLAKELRRQLGLRLFNLDIIREHGTRDQFYVIDINYFPGYGK 249 (274)
Q Consensus 173 ~g~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~lA~~~~~~lGl~l~G~Dvi~~~~~g~~~~ViDVN~fPg~~g 249 (274)
.|.++|+++++.++.+.... +++...++|+++++++||.+++++||+++||||+|++.+++++|+|+||||||||++
T Consensus 229 ~G~~~f~~vs~~~~~~~~~~~~~~~~~~~~~p~~~~l~~La~~~r~alGl~l~GvDvI~~~~~~~~~~VidVN~fP~~k~ 308 (328)
T PLN02941 229 EGVLPFPRVSNAAASADDADNGGLDPEVAELPPRPFLEDLARELRRRLGLRLFNFDMIREHGTGDRYYVIDINYFPGYAK 308 (328)
T ss_pred ccccccccccccccccccccccccccccccCCChHHHHHHHHHHHHHhCCceEEEEEEeecCCCCceEEEEecCCCcccc
Confidence 67899999887766555544 556566788888999999999999999999999999976655799999999999999
Q ss_pred cccchHHHHHHHHHHHHhhc
Q 024006 250 MPEYEHIFTDFLLSLTQSRY 269 (274)
Q Consensus 250 ~~~~~~~l~~~l~~~~~~~~ 269 (274)
+|+|++.|+++|++++++++
T Consensus 309 ~p~~~~~l~~~~~~~~~~~~ 328 (328)
T PLN02941 309 MPGYETVLTDFLLSLVQKKY 328 (328)
T ss_pred CCchHHHHHHHHHHHHhcCC
Confidence 99999999999999998874
No 3
>PF08443 RimK: RimK-like ATP-grasp domain; InterPro: IPR013651 This ATP-grasp domain is found in the ribosomal S6 modification enzyme RimK []. It has an unusual nucleotide-binding fold referred to as palmate, or ATP-grasp fold. This domain is found in a number of enzymes of known structure as well as in urea amidolyase, tubulin-tyrosine ligase, and three enzymes of purine biosynthesis.; PDB: 1UC8_B 1UC9_A.
Probab=99.95 E-value=2.2e-27 Score=204.97 Aligned_cols=168 Identities=27% Similarity=0.456 Sum_probs=99.8
Q ss_pred cCHHHHHHHHHhccccCCCCCccCCCEEEEecCCCChhHHHHhcCCCCcEEEeeCcCCCCccceeeEEEeChhhHhcc--
Q 024006 50 HNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKKL-- 127 (274)
Q Consensus 50 ~dR~~~~~~L~~~~~~~~~~~I~~P~~~~~~~~~~~~~~~l~~~~l~~P~VvKp~~a~Gs~~sh~m~iv~~~~~l~~l-- 127 (274)
.||..+++.|++. ||++|+|.+.. +.++..+.+.+.+ +||+|+||..|+ .+.+|.++.+.+++.++
T Consensus 2 ~dK~~~~~~l~~~-------gipvP~t~~~~-~~~~~~~~~~~~~-~~p~ViKp~~g~---~G~gV~~i~~~~~~~~~l~ 69 (190)
T PF08443_consen 2 EDKLLTLQLLAKA-------GIPVPETRVTN-SPEEAKEFIEELG-GFPVVIKPLRGS---SGRGVFLINSPDELESLLD 69 (190)
T ss_dssp HBHHHHHHHHHHT-------T-----EEEES-SHHHHHHHHHHH---SSEEEE-SB----------EEEESHCHHHHHHH
T ss_pred CCHHHHHHHHHHC-------CcCCCCEEEEC-CHHHHHHHHHHhc-CCCEEEeeCCCC---CCCEEEEecCHHHHHHHHH
Confidence 5899999999996 89999999995 3334555566655 899999998853 57899999999887653
Q ss_pred -----CCCeEEEecccCCC-eEEEEEEECCEEEEEEEecCCCCcccccccCCceeeecCcccccccCCcCCCCccccCCC
Q 024006 128 -----EPPLVLQEFVNHGG-VLFKVYIVGEAIKVVRRFSLPDVTKQDLSTSAGVFRFPRVSCAAASADDADLDPCVAELP 201 (274)
Q Consensus 128 -----~~p~vvQefI~h~g-~~~KV~VIG~~v~~~~R~S~p~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (274)
+.++++|+||++.+ +|+||+|||++++++++++.++ ++|+++ .+.++ ..+... +
T Consensus 70 ~~~~~~~~~~~Q~fI~~~~g~d~Rv~Vig~~vv~a~~r~~~~---~d~r~n--------~~~g~-~~~~~~-------l- 129 (190)
T PF08443_consen 70 AFKRLENPILVQEFIPKDGGRDLRVYVIGGKVVGAYRRSSPE---GDFRTN--------LSRGG-KVEPYD-------L- 129 (190)
T ss_dssp -----TTT-EEEE----SS---EEEEEETTEEEEEEE------------------------------EE-----------
T ss_pred HHHhccCcceEeccccCCCCcEEEEEEECCEEEEEEEEecCc---ccchhh--------hccCc-eEEEec-------C-
Confidence 67999999999874 9999999999999887776442 234433 11111 111111 1
Q ss_pred ChHHHHHHHHHHHHHhCCceeEEeEEEeCCCCCeEEEEeccCCCCCCCcccc
Q 024006 202 PRPLLERLAKELRRQLGLRLFNLDIIREHGTRDQFYVIDINYFPGYGKMPEY 253 (274)
Q Consensus 202 ~~~~~~~lA~~~~~~lGl~l~G~Dvi~~~~~g~~~~ViDVN~fPg~~g~~~~ 253 (274)
.++++++|.+++++||++++|||++..+ + ++||+|||.+|||++++..
T Consensus 130 -~~e~~~~a~~~~~~lgl~~~giDi~~~~--~-~~~v~EvN~~~~~~~~~~~ 177 (190)
T PF08443_consen 130 -PEEIKELALKAARALGLDFAGIDILDTN--D-GPYVLEVNPNPGFRGIEEA 177 (190)
T ss_dssp --HHHHHHHHHHHHHTT-SEEEEEEEEET--T-EEEEEEEETT---TTHHHH
T ss_pred -CHHHHHHHHHHHHHhCCCEEEEEEEecC--C-CeEEEEecCCchHhHHHHH
Confidence 2568999999999999999999977654 2 5899999999999999664
No 4
>COG0189 RimK Glutathione synthase/Ribosomal protein S6 modification enzyme (glutaminyl transferase) [Coenzyme metabolism / Translation, ribosomal structure and biogenesis]
Probab=99.95 E-value=2.2e-26 Score=213.56 Aligned_cols=196 Identities=22% Similarity=0.297 Sum_probs=143.7
Q ss_pred CCcEEeCcHHHHHHhcCHHHHHHHHHhccccCCCCCccCCCEEEEecCCCChhHHHHhcCCCCcEEEeeCcCCCCcccee
Q 024006 35 PEVTVLDPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHE 114 (274)
Q Consensus 35 P~v~Vidp~~ai~~l~dR~~~~~~L~~~~~~~~~~~I~~P~~~~~~~~~~~~~~~l~~~~l~~P~VvKp~~a~Gs~~sh~ 114 (274)
-|++||||+++++.+.||..+++.|+.. ++|+|+|.++.+. ++... .....++||+|+||+.| | ++.+
T Consensus 103 ~G~~viN~p~~i~~~~nK~~~~~~l~~~-------~ipvP~T~i~~~~-~~~~~-~~~~~~g~pvVlKp~~G--s-~G~g 170 (318)
T COG0189 103 KGVPVINDPQSIRRCRNKLYTTQLLAKA-------GIPVPPTLITRDP-DEAAE-FVAEHLGFPVVLKPLDG--S-GGRG 170 (318)
T ss_pred cCCeEECCHHHHHhhhhHHHHHHHHHhc-------CCCCCCEEEEcCH-HHHHH-HHHHhcCCCEEEeeCCC--C-Cccc
Confidence 4799999999999999999999999985 8999999999633 23333 33456899999999995 4 8889
Q ss_pred eEEEeChh-hHhcc--------CCCeEEEecccCCCeEEEEEEECCEEE-E--EEEecCCCCcccccccCCceeeecCcc
Q 024006 115 LSLAYDQY-SLKKL--------EPPLVLQEFVNHGGVLFKVYIVGEAIK-V--VRRFSLPDVTKQDLSTSAGVFRFPRVS 182 (274)
Q Consensus 115 m~iv~~~~-~l~~l--------~~p~vvQefI~h~g~~~KV~VIG~~v~-~--~~R~S~p~~~~~~~~~~~g~~~~~~~~ 182 (274)
+..+.+.+ ++.++ ..++++||||+..++++|.++|||... + +++|-.. .++|++| .+
T Consensus 171 V~~v~~~d~~l~~~~e~~~~~~~~~~ivQeyi~~~~~~~rrivv~~~~~~~~y~~~R~~~---~~~~R~N--------~a 239 (318)
T COG0189 171 VFLVEDADPELLSLLETLTQEGRKLIIVQEYIPKAKRDDRRVLVGGGEVVAIYALARIPA---SGDFRSN--------LA 239 (318)
T ss_pred eEEecCCChhHHHHHHHHhccccceEehhhhcCcccCCcEEEEEeCCEEeEEeeeccccC---CCCceee--------cc
Confidence 99999998 76553 236999999999876667666666544 4 3344211 1234433 33
Q ss_pred cccccCCcCCCCccccCCCChHHHHHHHHHHHHHhCCceeEEeEEEeCCCCCeEEEEeccCCCCCCCc----cc--chHH
Q 024006 183 CAAASADDADLDPCVAELPPRPLLERLAKELRRQLGLRLFNLDIIREHGTRDQFYVIDINYFPGYGKM----PE--YEHI 256 (274)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~lA~~~~~~lGl~l~G~Dvi~~~~~g~~~~ViDVN~fPg~~g~----~~--~~~~ 256 (274)
++| .++...+ .+++++||.+++++||+.++|+||++++ +| +||+|||..|++++. ++ ....
T Consensus 240 ~Gg-~~e~~~l---------~~e~~elA~kaa~~lGl~~~GVDiie~~-~g--~~V~EVN~sP~~~~~i~~~~g~~~~~~ 306 (318)
T COG0189 240 RGG-RAEPCEL---------TEEEEELAVKAAPALGLGLVGVDIIEDK-DG--LYVTEVNVSPTGKGEIERVTGVNIAGL 306 (318)
T ss_pred ccc-cccccCC---------CHHHHHHHHHHHHHhCCeEEEEEEEecC-CC--cEEEEEeCCCccccchhhhcCCchHHH
Confidence 322 3444433 3567999999999999999999999984 34 899999999987772 33 2355
Q ss_pred HHHHHHHHHH
Q 024006 257 FTDFLLSLTQ 266 (274)
Q Consensus 257 l~~~l~~~~~ 266 (274)
+.+++.+.++
T Consensus 307 ~~~~ie~~~~ 316 (318)
T COG0189 307 IIDAIEKFVR 316 (318)
T ss_pred HHHHHHHHHh
Confidence 5555555544
No 5
>PRK10446 ribosomal protein S6 modification protein; Provisional
Probab=99.95 E-value=4.7e-26 Score=209.48 Aligned_cols=205 Identities=17% Similarity=0.253 Sum_probs=148.8
Q ss_pred HHHHHhCCCcEEeCcHHHHHHhcCHHHHHHHHHhccccCCCCCccCCCEEEEecCCCChhHHHHhcCCCCcEEEeeCcCC
Q 024006 28 EEYRQTHPEVTVLDPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVAD 107 (274)
Q Consensus 28 ~~y~~~~P~v~Vidp~~ai~~l~dR~~~~~~L~~~~~~~~~~~I~~P~~~~~~~~~~~~~~~l~~~~l~~P~VvKp~~a~ 107 (274)
++.++.. +++++|++.+++.++||..+.+.|++. ||++|++.++. +.+++.+.+.. -.+||+|+||..|+
T Consensus 77 ~~~le~~-g~~v~n~~~a~~~~~dK~~~~~~l~~~-------gip~P~t~~~~-~~~~~~~~~~~-~~~~P~VvKP~~g~ 146 (300)
T PRK10446 77 LRQFEML-GSYPLNESVAIARARDKLRSMQLLARQ-------GIDLPVTGIAH-SPDDTSDLIDM-VGGAPLVVKLVEGT 146 (300)
T ss_pred HHHHHHC-CCceecCHHHHHhhhcHHHHHHHHHHc-------CCCCCCEEEeC-CHHHHHHHHHH-hCCCCEEEEECCCC
Confidence 4445543 479999999999999999999999996 89999998874 22223332322 23799999999963
Q ss_pred CCccceeeEEEeChhhHhc-------cCCCeEEEecccC-CCeEEEEEEECCEEEEEEEecCCCCcccccccCCceeeec
Q 024006 108 GSAKSHELSLAYDQYSLKK-------LEPPLVLQEFVNH-GGVLFKVYIVGEAIKVVRRFSLPDVTKQDLSTSAGVFRFP 179 (274)
Q Consensus 108 Gs~~sh~m~iv~~~~~l~~-------l~~p~vvQefI~h-~g~~~KV~VIG~~v~~~~R~S~p~~~~~~~~~~~g~~~~~ 179 (274)
+|.++.++.+.+++.. .+.++++||||++ .|+|++|+|+|++++++.++..+. ++|+++
T Consensus 147 ---~g~GV~~v~~~~~~~~~~~~~~~~~~~~lvQe~I~~~~g~d~rv~vig~~~~~~~~r~~~~---~~~~~n------- 213 (300)
T PRK10446 147 ---QGIGVVLAETRQAAESVIDAFRGLNAHILVQEYIKEAQGCDIRCLVVGDEVVAAIERRAKE---GDFRSN------- 213 (300)
T ss_pred ---CcccEEEEcCHHHHHHHHHHHHhcCCCEEEEeeeccCCCceEEEEEECCEEEEEEEEecCC---Cchhhe-------
Confidence 5788999999877653 3668999999987 599999999999988765553211 122211
Q ss_pred CcccccccCCcCCCCccccCCCChHHHHHHHHHHHHHhCCceeEEeEEEeCCCCCeEEEEeccCCCCCCCcccc-----h
Q 024006 180 RVSCAAASADDADLDPCVAELPPRPLLERLAKELRRQLGLRLFNLDIIREHGTRDQFYVIDINYFPGYGKMPEY-----E 254 (274)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lA~~~~~~lGl~l~G~Dvi~~~~~g~~~~ViDVN~fPg~~g~~~~-----~ 254 (274)
... |....... ..++++++|.++.++||+.++|+|++.+. +| +||+|||..|||++++.. .
T Consensus 214 -~~~-g~~~~~~~---------l~~~~~~~a~~a~~alg~~~~gvD~~~~~-~g--~~vlEvN~~pg~~~~~~~~g~~~~ 279 (300)
T PRK10446 214 -LHR-GGAASVAS---------ITPQEREIAIKAARTMALDVAGVDILRAN-RG--PLVMEVNASPGLEGIEKTTGIDIA 279 (300)
T ss_pred -ecc-CCeeccCC---------CCHHHHHHHHHHHHHhCCCEEEEEEEEcC-CC--cEEEEEECCCChhhhHHHHCcCHH
Confidence 111 11111111 13568999999999999999999999874 34 689999999999988754 4
Q ss_pred HHHHHHHHHHHHhhc
Q 024006 255 HIFTDFLLSLTQSRY 269 (274)
Q Consensus 255 ~~l~~~l~~~~~~~~ 269 (274)
+.+.+++.+.+..++
T Consensus 280 ~~~~~~i~~~~~~~~ 294 (300)
T PRK10446 280 GKMIRWIERHATTEY 294 (300)
T ss_pred HHHHHHHHHhccccc
Confidence 666666666665555
No 6
>TIGR02144 LysX_arch Lysine biosynthesis enzyme LysX. The family of proteins found in this equivalog include the characterized LysX from Thermus thermophilus which is part of a well-organized lysine biosynthesis gene cluster. LysX is believed to carry out an ATP-dependent acylation of the amino group of alpha-aminoadipate in the prokaryotic version of the fungal AAA lysine biosynthesis pathway. No species having a sequence in this equivalog contains the elements of the more common diaminopimelate lysine biosythesis pathway, and none has been shown to be a lysine auxotroph. These sequences have mainly recieved the name of the related enzyme, "ribosomal protein S6 modification protein RimK". RimK has been characterized in E. coli, and acts by ATP-dependent condensation of S6 with glutamate residues.
Probab=99.94 E-value=7.6e-25 Score=198.30 Aligned_cols=198 Identities=19% Similarity=0.304 Sum_probs=147.3
Q ss_pred HHHHhCCCcEEeCcHHHHHHhcCHHHHHHHHHhccccCCCCCccCCCEEEEecCCCChhHHHHhcCCCCcEEEeeCcCCC
Q 024006 29 EYRQTHPEVTVLDPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADG 108 (274)
Q Consensus 29 ~y~~~~P~v~Vidp~~ai~~l~dR~~~~~~L~~~~~~~~~~~I~~P~~~~~~~~~~~~~~~l~~~~l~~P~VvKp~~a~G 108 (274)
...+. -+++++||+++++.+.||..+++.|+++ ||++|++..+. +.++..+.. ..++||+|+||..|+
T Consensus 66 ~~le~-~g~~~~n~~~~~~~~~dK~~~~~~l~~~-------gip~P~t~~~~-~~~~~~~~~--~~~~~P~vvKP~~g~- 133 (280)
T TIGR02144 66 RLLEA-LGVPVINSSHVIEACGDKIFTYLKLAKA-------GVPTPRTYLAF-DREAALKLA--EALGYPVVLKPVIGS- 133 (280)
T ss_pred HHHHH-CCCcEECcHHHHHHHhhHHHHHHHHHHC-------CcCCCCeEeeC-CHHHHHHHH--HHcCCCEEEEECcCC-
Confidence 33344 3689999999999999999999999986 89999998874 222233322 357899999999864
Q ss_pred CccceeeEEEeChhhHhcc-----------CCCeEEEecccCCCeEEEEEEECCEEEEE-EEecCCCCcccccccCCcee
Q 024006 109 SAKSHELSLAYDQYSLKKL-----------EPPLVLQEFVNHGGVLFKVYIVGEAIKVV-RRFSLPDVTKQDLSTSAGVF 176 (274)
Q Consensus 109 s~~sh~m~iv~~~~~l~~l-----------~~p~vvQefI~h~g~~~KV~VIG~~v~~~-~R~S~p~~~~~~~~~~~g~~ 176 (274)
++.++.++.+.+++.++ +.++++||||++.|++++++|+|+++.+. .|.+ .+++.+
T Consensus 134 --~g~gv~~v~~~~~l~~~~~~~~~~~~~~~~~~ivQefI~~~~~d~~v~vig~~~~~~~~r~~-~~~~~~--------- 201 (280)
T TIGR02144 134 --WGRLVALIRDKDELESLLEHKEVLGGSQHKLFYIQEYINKPGRDIRVFVIGDEAIAAIYRYS-NHWRTN--------- 201 (280)
T ss_pred --CcCCEEEECCHHHHHHHHHHHHhhcCCcCCeEEEEcccCCCCCceEEEEECCEEEEEEEEcC-Cchhhh---------
Confidence 46789999999876541 25799999999879999999999998765 4444 223221
Q ss_pred eecCcccccccCCcCCCCccccCCCChHHHHHHHHHHHHHhCCceeEEeEEEeCCCCCeEEEEeccCCCCCCCcc-----
Q 024006 177 RFPRVSCAAASADDADLDPCVAELPPRPLLERLAKELRRQLGLRLFNLDIIREHGTRDQFYVIDINYFPGYGKMP----- 251 (274)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lA~~~~~~lGl~l~G~Dvi~~~~~g~~~~ViDVN~fPg~~g~~----- 251 (274)
.+.++ ...... ..++++++|.++.+++|+.++|||++.+.+ | .++|+|||..|||.++.
T Consensus 202 ----~~~g~-~~~~~~---------~~~~~~~~a~~~~~~lg~~~~~vD~~~~~~-g-~~~v~EvN~~p~~~~~~~~~g~ 265 (280)
T TIGR02144 202 ----TARGG-KAEPCP---------LDEEVEELAVKAAEAVGGGVVAIDIFESKE-R-GLLVNEVNHVPEFKNSVRVTGV 265 (280)
T ss_pred ----hhcCC-ceeccC---------CCHHHHHHHHHHHHHhCCCeEEEEEEEcCC-C-CEEEEEEeCCcchhhhhHhhCC
Confidence 11111 111111 135689999999999999999999999753 3 48999999999999874
Q ss_pred cchHHHHHHHHHHHH
Q 024006 252 EYEHIFTDFLLSLTQ 266 (274)
Q Consensus 252 ~~~~~l~~~l~~~~~ 266 (274)
++.+.+.+++.++++
T Consensus 266 ~~~~~~~~~~~~~~~ 280 (280)
T TIGR02144 266 NVAGEILEYAVSLVK 280 (280)
T ss_pred CHHHHHHHHHHHhhC
Confidence 456888888877764
No 7
>TIGR00768 rimK_fam alpha-L-glutamate ligases, RimK family. This family, related to bacterial glutathione synthetases, contains at least two different alpha-L-glutamate ligases. One is RimK, as in E. coli, which adds additional Glu residues to the native Glu-Glu C-terminus of ribosomal protein S6, but not to Lys-Glu mutants. Most species with a member of this subfamily lack an S6 homolog ending in Glu-Glu, however. Members in Methanococcus jannaschii act instead as a tetrahydromethanopterin:alpha-l-glutamate ligase (MJ0620) and a gamma-F420-2:alpha-l-glutamate ligase (MJ1001).
Probab=99.91 E-value=1e-22 Score=183.09 Aligned_cols=189 Identities=20% Similarity=0.308 Sum_probs=139.9
Q ss_pred HHHHHHHhCCCcEEeCcHHHHHHhcCHHHHHHHHHhccccCCCCCccCCCEEEEecCCCChhHHHHhcCCCCcEEEeeCc
Q 024006 26 ILEEYRQTHPEVTVLDPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLV 105 (274)
Q Consensus 26 ~l~~y~~~~P~v~Vidp~~ai~~l~dR~~~~~~L~~~~~~~~~~~I~~P~~~~~~~~~~~~~~~l~~~~l~~P~VvKp~~ 105 (274)
.+.+..+. -+++++|++++++.+.||..+++.|++. ||++|++..+. +.+++.+.+ ..++||+|+||..
T Consensus 64 ~~~~~l~~-~g~~~~~~~~~~~~~~dK~~~~~~l~~~-------gi~~P~t~~~~-~~~~~~~~~--~~~~~p~vvKP~~ 132 (277)
T TIGR00768 64 AVARYLES-LGVPVINSSDAILNAGDKFLTSQLLAKA-------GLPQPRTGLAG-SPEEALKLI--EEIGFPVVLKPVF 132 (277)
T ss_pred HHHHHHHH-CCCeeeCCHHHHHHHhhHHHHHHHHHHC-------CCCCCCEEEeC-CHHHHHHHH--HhcCCCEEEEECc
Confidence 44555554 3689999999999999999999999986 89999998885 322333333 3467999999999
Q ss_pred CCCCccceeeEEEeChhhHhcc-------C---CCeEEEecccCC-CeEEEEEEECCEEEEEEEecCCCCcccccccCCc
Q 024006 106 ADGSAKSHELSLAYDQYSLKKL-------E---PPLVLQEFVNHG-GVLFKVYIVGEAIKVVRRFSLPDVTKQDLSTSAG 174 (274)
Q Consensus 106 a~Gs~~sh~m~iv~~~~~l~~l-------~---~p~vvQefI~h~-g~~~KV~VIG~~v~~~~R~S~p~~~~~~~~~~~g 174 (274)
|+ .+.++.++.+.+++..+ . .++++||||++. |.+++|+|+|++++++.++..+ ++|.++
T Consensus 133 g~---~g~gv~~i~~~~~l~~~~~~~~~~~~~~~~~lvQe~I~~~~~~~~rv~v~~~~~~~~~~r~~~----~~~~~n-- 203 (277)
T TIGR00768 133 GS---WGRLVSLARDKQAAETLLEHFEQLNGPQNLFYVQEYIKKPGGRDIRVFVVGDEVIAAIYRITS----GHWRTN-- 203 (277)
T ss_pred CC---CCCceEEEcCHHHHHHHHHHHHHhcccCCcEEEEeeecCCCCceEEEEEECCEEEEEEEEcCC----Cchhhh--
Confidence 64 36789999999887532 2 379999999976 5899999999999876555321 122211
Q ss_pred eeeecCcccccccCCcCCCCccccCCCChHHHHHHHHHHHHHhCCceeEEeEEEeCCCCCeEEEEeccCCCCCCCccc
Q 024006 175 VFRFPRVSCAAASADDADLDPCVAELPPRPLLERLAKELRRQLGLRLFNLDIIREHGTRDQFYVIDINYFPGYGKMPE 252 (274)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lA~~~~~~lGl~l~G~Dvi~~~~~g~~~~ViDVN~fPg~~g~~~ 252 (274)
...++ ...... ..++++++|.++.++||+.++|||++++. +| +++|+|||..||+.++..
T Consensus 204 ------~~~g~-~~~~~~---------l~~~~~~~a~~~~~~l~~~~~~vD~~~~~-~g-~~~viEiN~~p~~~~~~~ 263 (277)
T TIGR00768 204 ------LARGG-KAEPCP---------LTEEIEELAIKAAKALGLDVVGIDLLESE-DR-GLLVNEVNPNPEFKNSVK 263 (277)
T ss_pred ------hhcCC-eeeecC---------CCHHHHHHHHHHHHHhCCCeEEEEEEEcC-CC-CeEEEEEcCCcchhhhHH
Confidence 11111 111111 12568999999999999999999999986 44 589999999999988753
No 8
>TIGR03103 trio_acet_GNAT GNAT-family acetyltransferase TIGR03103. Members of this protein family belong to the GNAT family of acetyltransferases. Each is part of a conserved three-gene cassette sparsely distributed across at least twenty different species known so far, including alpha, beta, and gamma Proteobacteria, Mycobacterium, and Prosthecochloris, which is a member of the Chlorobi. The other two members of the cassette are a probable protease and an asparagine synthetase family protein.
Probab=99.87 E-value=9.9e-21 Score=187.43 Aligned_cols=189 Identities=15% Similarity=0.274 Sum_probs=133.4
Q ss_pred EeCcHHHHHHhcCHHHHHHHHHhccccCCCCCccCCCEEEEecCCCChhHHHHhcCCCCcEEEeeCcCCCCccceeeEE-
Q 024006 39 VLDPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSL- 117 (274)
Q Consensus 39 Vidp~~ai~~l~dR~~~~~~L~~~~~~~~~~~I~~P~~~~~~~~~~~~~~~l~~~~l~~P~VvKp~~a~Gs~~sh~m~i- 117 (274)
.++++.++..+.||..+.+.|++. ||++|++..+. +.++..+...+ ++ |+|+||..|+ ++.+|.+
T Consensus 285 ~~~s~~ai~~~~DK~~tk~lL~~a-------GIpVP~~~~~~-~~~~~~~~~~~--~G-~vVVKP~~G~---~G~Gv~v~ 350 (547)
T TIGR03103 285 ELTSAVAMSLCDDKRLTRRLVSEA-------GLQVPEQQLAG-NGEAVEAFLAE--HG-AVVVKPVRGE---QGKGISVD 350 (547)
T ss_pred CCCCHHHHHHhcCHHHHHHHHHHc-------CcCCCCEEEEC-CHHHHHHHHHH--hC-CEEEEECCCC---CCcCeEEe
Confidence 457889999999999999999996 89999999885 32234443433 34 7999998853 5788887
Q ss_pred EeChhhHhc-------cCCCeEEEecccCCCeEEEEEEECCEEEEEEEecCCCCccccc---c---------c---CCce
Q 024006 118 AYDQYSLKK-------LEPPLVLQEFVNHGGVLFKVYIVGEAIKVVRRFSLPDVTKQDL---S---------T---SAGV 175 (274)
Q Consensus 118 v~~~~~l~~-------l~~p~vvQefI~h~g~~~KV~VIG~~v~~~~R~S~p~~~~~~~---~---------~---~~g~ 175 (274)
+.++++|.+ ...++++|+|| .|.|+|++|||++++++++|-.|.+..+.. . . ..+.
T Consensus 351 v~~~~eL~~a~~~a~~~~~~vlvEe~i--~G~d~Rv~Vigg~vvaa~~R~~~~V~GDG~~ti~~Lie~~n~~~~~~~~~~ 428 (547)
T TIGR03103 351 VRTPDDLEAAIAKARQFCDRVLLERYV--PGEDLRLVVIDFEVVAAAVRRPPEVIGDGRSSIRDLIEKQSRRRAAATGGE 428 (547)
T ss_pred cCCHHHHHHHHHHHHhcCCcEEEEEec--cCCeEEEEEECCEEEEEEEecCcEEEeCCccCHHHHHHHHhcCccCCCCCc
Confidence 899988764 24589999999 599999999999999986664443211100 0 0 0000
Q ss_pred -----------------eee---------------cCcccccccCCcCCCCccccCCCChHHHHHHHHHHHHHhCCceeE
Q 024006 176 -----------------FRF---------------PRVSCAAASADDADLDPCVAELPPRPLLERLAKELRRQLGLRLFN 223 (274)
Q Consensus 176 -----------------~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lA~~~~~~lGl~l~G 223 (274)
+++ .|.+++|.. . +.. -...+..+++|.++++++||.++|
T Consensus 429 ~~i~~d~~~~~~l~~~g~~~~~V~~~G~~v~l~~~~Nl~tGg~~-~--dvt-----d~~~~~~~~~A~~aa~~~gl~~~G 500 (547)
T TIGR03103 429 SRIPLDAETERCLAEAGLDLDDVLPEGQRLRVRRTANLHTGGTI-H--DVT-----EQLHPDLREAAERAARALDIPVVG 500 (547)
T ss_pred CccCCCHHHHHHHHHcCCCccccCCCCCEEEEecCCcccCCCee-E--ecc-----cccCHHHHHHHHHHHHHhCCCeEE
Confidence 111 111111110 0 000 012467899999999999999999
Q ss_pred EeEEEeCCCCCeEEEEeccCCCCCCCcc
Q 024006 224 LDIIREHGTRDQFYVIDINYFPGYGKMP 251 (274)
Q Consensus 224 ~Dvi~~~~~g~~~~ViDVN~fPg~~g~~ 251 (274)
+|+|.++.+++.++|||||.-||+.+.+
T Consensus 501 vD~i~~~~~~p~~~iiEvN~~Pgl~~h~ 528 (547)
T TIGR03103 501 IDFLVPDVTGPDYVIIEANERPGLANHE 528 (547)
T ss_pred EEEEeccCCCCCeEEEEecCCccccccC
Confidence 9999976444458999999999999885
No 9
>PRK14570 D-alanyl-alanine synthetase A; Provisional
Probab=99.87 E-value=9.1e-21 Score=179.23 Aligned_cols=213 Identities=17% Similarity=0.290 Sum_probs=149.0
Q ss_pred eeeeeccCcHHHHHHHHHHHHhCCCcEEeCcH-HHHHHhcCHHHHHHHHHhccccCCCCCccCCCEEEEecCC-----CC
Q 024006 12 FSFLMQLTGKEWRQILEEYRQTHPEVTVLDPP-YAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDA-----SS 85 (274)
Q Consensus 12 ~~ilHK~~~~~~~~~l~~y~~~~P~v~Vidp~-~ai~~l~dR~~~~~~L~~~~~~~~~~~I~~P~~~~~~~~~-----~~ 85 (274)
|-+||=..+.+ ..+|.+++. -+++.+.+- .+...++||..+-+.|++. ||+||++..+.+.. ++
T Consensus 92 f~~lhG~~GEd--g~iqglle~-~giPy~Gs~~~asal~~DK~~tK~~l~~~-------GIpt~p~~~~~~~~~~~~~~~ 161 (364)
T PRK14570 92 FPIVHGRTGED--GAIQGFLKV-MDIPCVGAGILGSAISINKYFCKLLLKSF-------NIPLVPFIGFRKYDYFLDKEG 161 (364)
T ss_pred EEcCCCCCCCc--CHHHHHHHH-cCCCccCCCHHHHHHHHCHHHHHHHHHHc-------CCCCCCEEEEeccccccchHH
Confidence 66777666543 467788876 468888887 6999999999999999986 89999988874321 11
Q ss_pred hhHHHHhcCCCCcEEEeeCcCCCCccceeeEEEeChhhHhc-------cCCCeEEEecccCCCeEEEEEEECCEEEEEEE
Q 024006 86 IPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKK-------LEPPLVLQEFVNHGGVLFKVYIVGEAIKVVRR 158 (274)
Q Consensus 86 ~~~~l~~~~l~~P~VvKp~~a~Gs~~sh~m~iv~~~~~l~~-------l~~p~vvQefI~h~g~~~KV~VIG~~v~~~~R 158 (274)
..+.+ ...++||+|+||..+ || |.||.++.+.++|.. .+.++++||||. |+++.|.|+|+....+
T Consensus 162 ~~~~~-~~~lg~PviVKP~~~-Gs--S~Gv~~v~~~~el~~al~~a~~~~~~vlVEefI~--GrEi~v~Vlg~~~~~v-- 233 (364)
T PRK14570 162 IKKDI-KEVLGYPVIVKPAVL-GS--SIGINVAYNENQIEKCIEEAFKYDLTVVIEKFIE--AREIECSVIGNEQIKI-- 233 (364)
T ss_pred HHHHH-HHhcCCCEEEEeCCC-CC--CCcEEEeCCHHHHHHHHHHHHhCCCCEEEECCcC--CEEEEEEEECCCCceE--
Confidence 11112 245899999999885 44 568999999988864 356799999995 9999999999853111
Q ss_pred ecCCCCccccccc-CCceeeecCccc--cccc---CCcCCCCccccCCCChHHHHHHHHHHHHHhCCc-eeEEeEEEeCC
Q 024006 159 FSLPDVTKQDLST-SAGVFRFPRVSC--AAAS---ADDADLDPCVAELPPRPLLERLAKELRRQLGLR-LFNLDIIREHG 231 (274)
Q Consensus 159 ~S~p~~~~~~~~~-~~g~~~~~~~~~--~~~~---~~~~~~~~~~~~~~~~~~~~~lA~~~~~~lGl~-l~G~Dvi~~~~ 231 (274)
+|. .++.. ..++|+|..++. .+.. ..++.++++. .++++++|.++.++||+. ++.+|++++.+
T Consensus 234 --~~~---~Ei~~~~~~f~dy~~Ky~~~~~~~~~~~~Pa~l~~e~-----~~~i~~~A~~~~~aLg~~G~~RvDf~l~~~ 303 (364)
T PRK14570 234 --FTP---GEIVVQDFIFYDYDAKYSTIPGNSIVFNIPAHLDTKH-----LLDIKEYAFLTYKNLELRGMARIDFLIEKD 303 (364)
T ss_pred --eee---EEEEeCCCCccCHHHhcCCCCCCceEEECCCCCCHHH-----HHHHHHHHHHHHHHhCCcceEEEEEEEECC
Confidence 111 12111 124566654432 1111 0122233322 467999999999999997 56699999853
Q ss_pred CCCeEEEEeccCCCCCCCcccc
Q 024006 232 TRDQFYVIDINYFPGYGKMPEY 253 (274)
Q Consensus 232 ~g~~~~ViDVN~fPg~~g~~~~ 253 (274)
+| ++||+|||..||++....+
T Consensus 304 ~g-~~yvlEiNt~PG~t~~S~~ 324 (364)
T PRK14570 304 TG-LIYLNEINTIPGFTDISMF 324 (364)
T ss_pred CC-cEEEEEeeCCCCCCcccHH
Confidence 34 6899999999999887544
No 10
>PRK01372 ddl D-alanine--D-alanine ligase; Reviewed
Probab=99.86 E-value=2.9e-20 Score=170.54 Aligned_cols=194 Identities=17% Similarity=0.221 Sum_probs=138.3
Q ss_pred HHHHHHHhCCCcEEeCc-HHHHHHhcCHHHHHHHHHhccccCCCCCccCCCEEEEecCCCChhHHHHhcCCCCcEEEeeC
Q 024006 26 ILEEYRQTHPEVTVLDP-PYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPL 104 (274)
Q Consensus 26 ~l~~y~~~~P~v~Vidp-~~ai~~l~dR~~~~~~L~~~~~~~~~~~I~~P~~~~~~~~~~~~~~~l~~~~l~~P~VvKp~ 104 (274)
.++.+.+.. +++++.+ ..++..+.||..+.+.|.+. ||++|++..+.+. ++.... ...++||+|+||.
T Consensus 73 ~~~~~le~~-gi~~~g~~~~~~~~~~dK~~~k~~l~~~-------gIp~p~~~~~~~~-~~~~~~--~~~~~~P~ivKP~ 141 (304)
T PRK01372 73 TIQGLLELL-GIPYTGSGVLASALAMDKLRTKLVWQAA-------GLPTPPWIVLTRE-EDLLAA--IDKLGLPLVVKPA 141 (304)
T ss_pred HHHHHHHHc-CCCccCCCHHHHHHHhCHHHHHHHHHHC-------CCCCCCEEEEeCc-chHHHH--HhhcCCCEEEeeC
Confidence 355666665 7888876 79999999999999999886 8999999998633 223332 2467999999999
Q ss_pred cCCCCccceeeEEEeChhhHhc-------cCCCeEEEecccCCCeEEEEEEECCEEEEEEEecCCCCcccccccCCceee
Q 024006 105 VADGSAKSHELSLAYDQYSLKK-------LEPPLVLQEFVNHGGVLFKVYIVGEAIKVVRRFSLPDVTKQDLSTSAGVFR 177 (274)
Q Consensus 105 ~a~Gs~~sh~m~iv~~~~~l~~-------l~~p~vvQefI~h~g~~~KV~VIG~~v~~~~R~S~p~~~~~~~~~~~g~~~ 177 (274)
.++| |.++.++.+.+++.+ ...++++||||+ |+++.|.|+|+++....+...+ .+.++
T Consensus 142 ~g~~---s~Gv~~v~~~~el~~~~~~~~~~~~~~lvEe~i~--G~E~~v~vi~~~~~~~~~~~~~----------~~~~~ 206 (304)
T PRK01372 142 REGS---SVGVSKVKEEDELQAALELAFKYDDEVLVEKYIK--GRELTVAVLGGKALPVIEIVPA----------GEFYD 206 (304)
T ss_pred CCCC---CCCEEEeCCHHHHHHHHHHHHhcCCcEEEEcccC--CEEEEEEEECCCccceEEEEec----------CCEEe
Confidence 9653 568999999988754 257899999995 9999999999987654433221 11233
Q ss_pred ecCcccccccCCc--CCCCccccCCCChHHHHHHHHHHHHHhCCc-eeEEeEEEeCCCCCeEEEEeccCCCCCCCccc
Q 024006 178 FPRVSCAAASADD--ADLDPCVAELPPRPLLERLAKELRRQLGLR-LFNLDIIREHGTRDQFYVIDINYFPGYGKMPE 252 (274)
Q Consensus 178 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~lA~~~~~~lGl~-l~G~Dvi~~~~~g~~~~ViDVN~fPg~~g~~~ 252 (274)
+......+..... ..++++ ..++++++|.++.++||+. +++||++++. +| ++||+|||..||+.+-..
T Consensus 207 ~~~~~~~g~~~~~~p~~~~~~-----~~~~l~~~a~~~~~~lg~~g~~~iD~~~~~-~g-~~~viEvN~~p~~~~~~~ 277 (304)
T PRK01372 207 YEAKYLAGGTQYICPAGLPAE-----IEAELQELALKAYRALGCRGWGRVDFMLDE-DG-KPYLLEVNTQPGMTSHSL 277 (304)
T ss_pred eeccccCCCeEEEeCCCCCHH-----HHHHHHHHHHHHHHHhCCcceEEEEEEEcC-CC-CEEEEEecCCCCCCcccH
Confidence 3222211111000 112211 1356889999999999996 6679999986 35 689999999999986433
No 11
>TIGR01205 D_ala_D_alaTIGR D-alanine--D-alanine ligase. but a number of antibiotic resistance proteins score above the trusted cutoff of this model.
Probab=99.85 E-value=1.7e-19 Score=166.13 Aligned_cols=197 Identities=16% Similarity=0.251 Sum_probs=134.6
Q ss_pred HHHHHHHhCCCcEEeCc-HHHHHHhcCHHHHHHHHHhccccCCCCCccCCCEEEEecCCCChhHH---HHhcCCCCcEEE
Q 024006 26 ILEEYRQTHPEVTVLDP-PYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDV---VLKAGLTLPLVA 101 (274)
Q Consensus 26 ~l~~y~~~~P~v~Vidp-~~ai~~l~dR~~~~~~L~~~~~~~~~~~I~~P~~~~~~~~~~~~~~~---l~~~~l~~P~Vv 101 (274)
.++...+.. +++++++ +.++..+.||..+.+.|++. ||++|++..+..+..+.... .....++||+|+
T Consensus 80 ~~~~~le~~-gip~~g~~~~~~~~~~dK~~~~~~l~~~-------gip~p~~~~~~~~~~~~~~~~~~~~~~~~~~P~vv 151 (315)
T TIGR01205 80 TIQGLLELM-GIPYTGSGVLASALSMDKLLTKLLWKAL-------GLPTPDYIVLTQNRASADELECEQVAEPLGFPVIV 151 (315)
T ss_pred HHHHHHHHc-CCCccCCCHHHHHHHHCHHHHHHHHHHC-------CCCCCCEEEEecccccchhhhHHHHHHhcCCCEEE
Confidence 445566653 6889886 89999999999999999986 89999999886222111110 112468999999
Q ss_pred eeCcCCCCccceeeEEEeChhhHhcc-------CCCeEEEecccCCCeEEEEEEEC-CEEEEE-EEecCCCCcccccccC
Q 024006 102 KPLVADGSAKSHELSLAYDQYSLKKL-------EPPLVLQEFVNHGGVLFKVYIVG-EAIKVV-RRFSLPDVTKQDLSTS 172 (274)
Q Consensus 102 Kp~~a~Gs~~sh~m~iv~~~~~l~~l-------~~p~vvQefI~h~g~~~KV~VIG-~~v~~~-~R~S~p~~~~~~~~~~ 172 (274)
||..++| |.++.++.+.++|... ..++++|||| +|+++.|.|+| ++.... .+....
T Consensus 152 KP~~~~~---s~Gv~~v~~~~el~~~~~~~~~~~~~~lvEe~i--~G~e~~v~vi~~~~~~~~~~~~~~~---------- 216 (315)
T TIGR01205 152 KPAREGS---SVGVSKVKSEEELQAALDEAFEYDEEVLVEQFI--KGRELEVSILGNEEALPIIEIVPEI---------- 216 (315)
T ss_pred EeCCCCC---ccCEEEECCHHHHHHHHHHHHhcCCcEEEEcCC--CCEEEEEEEECCCCccceEEecCCC----------
Confidence 9999643 5689999999888642 5689999999 49999999999 543222 111100
Q ss_pred CceeeecCcccccccC--CcCCCCccccCCCChHHHHHHHHHHHHHhCC-ceeEEeEEEeCCCCCeEEEEeccCCCCCCC
Q 024006 173 AGVFRFPRVSCAAASA--DDADLDPCVAELPPRPLLERLAKELRRQLGL-RLFNLDIIREHGTRDQFYVIDINYFPGYGK 249 (274)
Q Consensus 173 ~g~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~lA~~~~~~lGl-~l~G~Dvi~~~~~g~~~~ViDVN~fPg~~g 249 (274)
..++++......+... .+..++++. .++++++|.++.++||+ .+++||++++. +| +++|+|||..||+..
T Consensus 217 ~~~~~~~~~~~~~~~~~~~p~~l~~~~-----~~~i~~~a~~~~~~lg~~G~~~vD~~~~~-~g-~~~viEvN~~pg~~~ 289 (315)
T TIGR01205 217 EGFYDYEAKYLDGSTEYVIPAPLDEEL-----EEKIKELALKAYKALGCRGLARVDFFLDE-EG-EIYLNEINTIPGMTA 289 (315)
T ss_pred CCeeCcccccCCCCeeEEeCCCCCHHH-----HHHHHHHHHHHHHHhCCCceEEEEEEEeC-CC-CEEEEEeeCCCCCCC
Confidence 0022222211111100 111122211 35689999999999999 48899999985 34 689999999999987
Q ss_pred ccc
Q 024006 250 MPE 252 (274)
Q Consensus 250 ~~~ 252 (274)
...
T Consensus 290 ~s~ 292 (315)
T TIGR01205 290 ISL 292 (315)
T ss_pred ccH
Confidence 543
No 12
>TIGR01380 glut_syn glutathione synthetase, prokaryotic. This model was built using glutathione synthetases found in Gram-negative bacteria. This gene does not appear to be present in genomes of Gram-positive bacteria. Glutathione synthetase has an ATP-binding domain in the COOH terminus and catalyzes the second step in the glutathione biosynthesis pathway: ATP + gamma-L-glutamyl-L-cysteine + glycine = ADP + phosphate + glutathione. Glutathione is a tripeptide that functions as a reductant in many cellular reactions.
Probab=99.84 E-value=7.4e-20 Score=169.62 Aligned_cols=195 Identities=14% Similarity=0.211 Sum_probs=129.7
Q ss_pred HHHHHHHhCCCcEEeCcHHHHHHhcCHHHHHHHHHhccccCCCCCccCCCEEEEecCCCChhHHHHhcCCCCcEEEeeCc
Q 024006 26 ILEEYRQTHPEVTVLDPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLV 105 (274)
Q Consensus 26 ~l~~y~~~~P~v~Vidp~~ai~~l~dR~~~~~~L~~~~~~~~~~~I~~P~~~~~~~~~~~~~~~l~~~~l~~P~VvKp~~ 105 (274)
.+.++.+. -+++|+||+++++.+.||..+++.+ .++|+|.+.. +.+++.+.+...+ |+|+||+.
T Consensus 99 ~~l~~le~-~g~~viN~p~~i~~~~dK~~~~~~~-----------~~vP~T~v~~-~~~~~~~~~~~~g---~vVvKPl~ 162 (312)
T TIGR01380 99 YLLELADP-TGTLVINSPQGLRDANEKLFTLQFP-----------KVIPPTLVTR-DKAEIRAFLAEHG---DIVLKPLD 162 (312)
T ss_pred HHHHHHHh-CCCeEEeCHHHHHhhhhHHHHhhCc-----------CCCCCEEEeC-CHHHHHHHHHHcC---CEEEEECC
Confidence 34455554 3789999999999999999877652 2589998764 4334444454444 99999999
Q ss_pred CCCCccceeeEEEeCh-hhH-------hcc-CCCeEEEecccC-CCeEEEEEEECCEEEE-EEEecCCCCcccccccCCc
Q 024006 106 ADGSAKSHELSLAYDQ-YSL-------KKL-EPPLVLQEFVNH-GGVLFKVYIVGEAIKV-VRRFSLPDVTKQDLSTSAG 174 (274)
Q Consensus 106 a~Gs~~sh~m~iv~~~-~~l-------~~l-~~p~vvQefI~h-~g~~~KV~VIG~~v~~-~~R~S~p~~~~~~~~~~~g 174 (274)
|+ ++.++..+... ..+ ..+ ..|+++|+||+. .+.|+||+|||+++++ +.||..+. ++|+++
T Consensus 163 G~---~G~gv~~v~~~~~~~~~~~~~~~~~~~~~~~vQ~yI~~~~~~D~Rv~vv~g~vv~~ai~R~~~~---gd~r~N-- 234 (312)
T TIGR01380 163 GM---GGEGIFRLDPGDPNFNSILETMTQRGREPVMAQRYLPEIKEGDKRILLIDGEPIGAAVARIPAG---GEFRGN-- 234 (312)
T ss_pred CC---CCceEEEEcCCCccHHHHHHHHHhccCCcEEEEeccccccCCCEEEEEECCeEEEEEEEecCCC---CCcccc--
Confidence 63 57788877652 222 222 468999999986 4689999999999876 66553221 133332
Q ss_pred eeeecCcccccccCCcCCCCccccCCCChHHHHHHHHHHH---HHhCCceeEEeEEEeCCCCCeEEEEeccCC--CCCCC
Q 024006 175 VFRFPRVSCAAASADDADLDPCVAELPPRPLLERLAKELR---RQLGLRLFNLDIIREHGTRDQFYVIDINYF--PGYGK 249 (274)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lA~~~~---~~lGl~l~G~Dvi~~~~~g~~~~ViDVN~f--Pg~~g 249 (274)
...+| .....++ .++.+++|.++. +++|+.++|+|+| | ++++|||.. +||++
T Consensus 235 ------~~~Gg-~~~~~~l---------~~e~~~ia~~~~~~~~~~gl~~agVDii-----g--~~v~EvN~~~p~~~~~ 291 (312)
T TIGR01380 235 ------LAVGG-RGEATEL---------SERDREICADVAPELKRRGLLFVGIDVI-----G--GYLTEVNVTSPTGIRE 291 (312)
T ss_pred ------ccCCc-eeeccCC---------CHHHHHHHHHHHHHHHhcCCcEEEEEEe-----C--CEEEEEecCCcchHHH
Confidence 22222 2222221 245688998887 6779999999999 2 369999975 59988
Q ss_pred cccch-HHHHHHHHHHHHh
Q 024006 250 MPEYE-HIFTDFLLSLTQS 267 (274)
Q Consensus 250 ~~~~~-~~l~~~l~~~~~~ 267 (274)
+.... .-+.+.+.+++++
T Consensus 292 ~~~~~g~~ia~~i~d~l~~ 310 (312)
T TIGR01380 292 IDRQKGVNIAGMLWDAIEK 310 (312)
T ss_pred HHhhhCCCHHHHHHHHHHh
Confidence 86542 3344444444443
No 13
>PRK14572 D-alanyl-alanine synthetase A; Provisional
Probab=99.84 E-value=1.8e-19 Score=169.18 Aligned_cols=214 Identities=17% Similarity=0.179 Sum_probs=142.7
Q ss_pred eeeeeccCcHHHHHHHHHHHHhCCCcEEe-CcHHHHHHhcCHHHHHHHHHhccccCCCCCccCCCEEEEecCCC--ChhH
Q 024006 12 FSFLMQLTGKEWRQILEEYRQTHPEVTVL-DPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDAS--SIPD 88 (274)
Q Consensus 12 ~~ilHK~~~~~~~~~l~~y~~~~P~v~Vi-dp~~ai~~l~dR~~~~~~L~~~~~~~~~~~I~~P~~~~~~~~~~--~~~~ 88 (274)
|..+|.-.++. ..+|.+.+. -+++++ .+..+...++||..|-+.|++. ||++|++..+.+... ...+
T Consensus 93 f~~~hg~~gEd--g~iq~~le~-~gipy~Gs~~~a~~i~~DK~~~k~~l~~~-------GI~~p~~~~~~~~~~~~~~~~ 162 (347)
T PRK14572 93 FLGLHGGAGED--GRIQGFLDT-LGIPYTGSGVLASALAMDKTRANQIFLQS-------GQKVAPFFELEKLKYLNSPRK 162 (347)
T ss_pred EEecCCCCCCC--cHHHHHHHH-cCcCcCCCCHHHHHHHhCHHHHHHHHHHc-------CCCCCCEEEEEccccccChHH
Confidence 44455444322 135666664 357776 4588999999999999999986 899999998853221 1111
Q ss_pred HH-HhcCCCCcEEEeeCcCCCCccceeeEEEeChhhHhcc-------CCCeEEEecccCCCeEEEEEEECC----EEEEE
Q 024006 89 VV-LKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKKL-------EPPLVLQEFVNHGGVLFKVYIVGE----AIKVV 156 (274)
Q Consensus 89 ~l-~~~~l~~P~VvKp~~a~Gs~~sh~m~iv~~~~~l~~l-------~~p~vvQefI~h~g~~~KV~VIG~----~v~~~ 156 (274)
.+ ....++||+|+||..+ |+ |.++.++.++++|... +.++++|||| .|+++.|.|+|+ +....
T Consensus 163 ~~~~~~~l~~PvvVKP~~g-gs--S~GV~~v~~~~el~~a~~~~~~~~~~vlVEefI--~G~E~sv~vi~~~~~g~~~~~ 237 (347)
T PRK14572 163 TLLKLESLGFPQFLKPVEG-GS--SVSTYKITNAEQLMTLLALIFESDSKVMSQSFL--SGTEVSCGVLERYRGGKRNPI 237 (347)
T ss_pred HHHHHHhcCCCEEEecCCC-CC--CCCEEEECCHHHHHHHHHHHHhcCCCEEEEcCc--ccEEEEEEEEeCccCCCCCce
Confidence 11 1235899999999995 33 5789999999988642 5689999999 589999999973 21100
Q ss_pred EEecCCCCcccccccCCceeeecCcccccccC--CcCCCCccccCCCChHHHHHHHHHHHHHhCCc-eeEEeEEEeCCCC
Q 024006 157 RRFSLPDVTKQDLSTSAGVFRFPRVSCAAASA--DDADLDPCVAELPPRPLLERLAKELRRQLGLR-LFNLDIIREHGTR 233 (274)
Q Consensus 157 ~R~S~p~~~~~~~~~~~g~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~lA~~~~~~lGl~-l~G~Dvi~~~~~g 233 (274)
.+|- .++....++|+|...+..+... .+..++++. .++++++|.++.++||+. ++++|+++++ |
T Consensus 238 ---~l~~---~ei~~~~~~~d~~~ky~~~~~~~~~Pa~l~~~~-----~~~i~~~a~~~~~~Lg~~G~~rvD~~~~~--~ 304 (347)
T PRK14572 238 ---ALPA---TEIVPGGEFFDFESKYKQGGSEEITPARISDQE-----MKRVQELAIRAHESLGCKGYSRTDFIIVD--G 304 (347)
T ss_pred ---eccc---EEEecCCCccCHHHccCCCCeEEEECCCCCHHH-----HHHHHHHHHHHHHHhCCcceeEEEEEEEC--C
Confidence 0111 1122223456655544322111 112233222 357899999999999998 6679999973 3
Q ss_pred CeEEEEeccCCCCCCCcccch
Q 024006 234 DQFYVIDINYFPGYGKMPEYE 254 (274)
Q Consensus 234 ~~~~ViDVN~fPg~~g~~~~~ 254 (274)
++||+|||..||++...-++
T Consensus 305 -~~~vlEiNt~PG~t~~S~~p 324 (347)
T PRK14572 305 -EPHILETNTLPGMTETSLIP 324 (347)
T ss_pred -cEEEEeeeCCCCCCcccHHH
Confidence 58999999999999875443
No 14
>PF07478 Dala_Dala_lig_C: D-ala D-ala ligase C-terminus; InterPro: IPR011095 This entry represents the C-terminal, catalytic domain of the D-alanine--D-alanine ligase enzyme 6.3.2.4 from EC. D-Alanine is one of the central molecules of the cross-linking step of peptidoglycan assembly. There are three enzymes involved in the D-alanine branch of peptidoglycan biosynthesis: the pyridoxal phosphate-dependent D-alanine racemase (Alr), the ATP-dependent D-alanine: D-alanine ligase (Ddl), and the ATP-dependent D-alanine:D-alanine-adding enzyme (MurF) [].; GO: 0008716 D-alanine-D-alanine ligase activity; PDB: 3Q1K_D 3I12_C 1IOV_A 1IOW_A 2DLN_A 4EG0_B 3LWB_A 1EHI_B 2FB9_A 3V4Z_A ....
Probab=99.84 E-value=3.4e-20 Score=162.17 Aligned_cols=164 Identities=20% Similarity=0.340 Sum_probs=111.4
Q ss_pred CccCCCEEEEecCCCChhH-HHHhcCCCCcEEEeeCcCCCCccceeeEEEeChhhHhc-------cCCCeEEEecccCCC
Q 024006 70 KVDVPRQLVIERDASSIPD-VVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKK-------LEPPLVLQEFVNHGG 141 (274)
Q Consensus 70 ~I~~P~~~~~~~~~~~~~~-~l~~~~l~~P~VvKp~~a~Gs~~sh~m~iv~~~~~l~~-------l~~p~vvQefI~h~g 141 (274)
||+||+++++...+..... .-....++||+|+||..+ || |.|+.++++.++|.. ++.++++|||| +|
T Consensus 6 gI~tp~~~~~~~~~~~~~~~~~~~~~l~~P~~VKP~~~-Gs--S~Gi~~v~~~~el~~ai~~~~~~~~~vlVEefI--~G 80 (203)
T PF07478_consen 6 GIPTPPYVVVKKNEDDSDSIEKILEDLGFPLFVKPASE-GS--SIGISKVHNEEELEEAIEKAFKYDDDVLVEEFI--SG 80 (203)
T ss_dssp T-BB-SEEEEETTSHHHHHHHHHHHHHSSSEEEEESST-ST--TTTEEEESSHHHHHHHHHHHTTTHSEEEEEE----SS
T ss_pred CCCCCCEEEEecccccchhHHHHHhhcCCCEEEEECCC-Cc--cEEEEEcCCHHHHHHHHHHHhhhcceEEEEeee--cc
Confidence 9999999999644321110 012356899999999985 56 678899999998864 36789999999 79
Q ss_pred eEEEEEEECC---EEEEEEEecCCCCcccccccCCceeeecCcccc--cc--cCCcCCCCccccCCCChHHHHHHHHHHH
Q 024006 142 VLFKVYIVGE---AIKVVRRFSLPDVTKQDLSTSAGVFRFPRVSCA--AA--SADDADLDPCVAELPPRPLLERLAKELR 214 (274)
Q Consensus 142 ~~~KV~VIG~---~v~~~~R~S~p~~~~~~~~~~~g~~~~~~~~~~--~~--~~~~~~~~~~~~~~~~~~~~~~lA~~~~ 214 (274)
+++.|.|+|+ .+...... ....++|+|+.+... +. ...+..++++. .++++++|.++.
T Consensus 81 ~E~tv~vl~~~~~~~~~~~ei----------~~~~~~~d~~~Ky~~~~~~~~~~~pa~l~~~~-----~~~i~~~a~~a~ 145 (203)
T PF07478_consen 81 REFTVGVLGNGEPRVLPPVEI----------VFPSEFYDYEAKYQPADSETEYIIPADLSEEL-----QEKIKEIAKKAF 145 (203)
T ss_dssp EEEEEEEEESSSTEEEEEEEE----------EESSSEEEHHHHHSGCCSCEEEESS-SS-HHH-----HHHHHHHHHHHH
T ss_pred cceEEEEEecCCcccCceEEE----------EcCCCceehhheeccCCCceEEEecCCCCHHH-----HHHHHHHHHHHH
Confidence 9999999994 44332222 223467888776632 11 01112233222 467999999999
Q ss_pred HHhCCceeE-EeEEEeCCCCCeEEEEeccCCCCCCCcccchH
Q 024006 215 RQLGLRLFN-LDIIREHGTRDQFYVIDINYFPGYGKMPEYEH 255 (274)
Q Consensus 215 ~~lGl~l~G-~Dvi~~~~~g~~~~ViDVN~fPg~~g~~~~~~ 255 (274)
++||+.-++ +|+.+++ +| ++|++|||..||+.....++.
T Consensus 146 ~~lg~~~~~RiD~rv~~-~g-~~~~lEiNt~PGlt~~S~~p~ 185 (203)
T PF07478_consen 146 KALGCRGYARIDFRVDE-DG-KPYFLEINTIPGLTPTSLFPR 185 (203)
T ss_dssp HHTTTCSEEEEEEEEET-TT-EEEEEEEESS-G-STTSHHHH
T ss_pred HHHcCCCceeEEEEecc-CC-ceEEEeccCcccccCCCHHHH
Confidence 999998776 9999985 45 799999999999988766653
No 15
>PRK12458 glutathione synthetase; Provisional
Probab=99.84 E-value=2.3e-19 Score=168.09 Aligned_cols=190 Identities=16% Similarity=0.232 Sum_probs=131.5
Q ss_pred CCcEEeCcHHHHHHhcCHHHHHHHHHhccccCCCCCccCCCEEEEecCCCChhHHHHhcCCCC-cEEEeeCcCCCCccce
Q 024006 35 PEVTVLDPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTL-PLVAKPLVADGSAKSH 113 (274)
Q Consensus 35 P~v~Vidp~~ai~~l~dR~~~~~~L~~~~~~~~~~~I~~P~~~~~~~~~~~~~~~l~~~~l~~-P~VvKp~~a~Gs~~sh 113 (274)
.+++++|++++++.+.||+.+++. .+ +++|+|.+.. +.+.+.+.+.+ .++ |+|+||+.|. ++.
T Consensus 113 ~g~~viN~p~~i~~~~dK~~~~~l-~~---------~~vP~T~v~~-~~~~~~~~~~~--~~~~pvVvKPl~G~---gG~ 176 (338)
T PRK12458 113 DGVLVVNDPDGLRIANNKLYFQSF-PE---------EVRPTTHISR-NKEYIREFLEE--SPGDKMILKPLQGS---GGQ 176 (338)
T ss_pred CCCeEecCHHHHHhccCHHHHHhh-cc---------CCCCCEEEeC-CHHHHHHHHHH--cCCCeEEEEECCCC---Ccc
Confidence 579999999999999999986543 22 4689998774 33334343433 334 5999999964 577
Q ss_pred eeEEEeChhh--Hhc----c--CCCeEEEecccC-CCeEEEEEEECCEEE------EEEEecCCCCcccccccCCceeee
Q 024006 114 ELSLAYDQYS--LKK----L--EPPLVLQEFVNH-GGVLFKVYIVGEAIK------VVRRFSLPDVTKQDLSTSAGVFRF 178 (274)
Q Consensus 114 ~m~iv~~~~~--l~~----l--~~p~vvQefI~h-~g~~~KV~VIG~~v~------~~~R~S~p~~~~~~~~~~~g~~~~ 178 (274)
++.++.+.+. +.. + ..++++||||+. .+.|+||+|+|++++ ++.+|.... ++|+++
T Consensus 177 gV~~v~~~~~~~~~~ile~~~~~~~~ivQeyI~~~~~gDiRv~vv~g~~v~~~g~~~a~~R~~~~---~d~RsN------ 247 (338)
T PRK12458 177 GVFLIEKSAQSNLNQILEFYSGDGYVIAQEYLPGAEEGDVRILLLNGEPLERDGHYAAMRRVPAG---GDVRSN------ 247 (338)
T ss_pred CeEEEecCChhhHHHHHHHHhhCCCEEEEEcccCCCCCCEEEEEECCEEEeeccceeEEEEecCC---CCeeec------
Confidence 8888876542 322 1 568999999996 367999999999999 876664321 233322
Q ss_pred cCcccccccCCcCCCCccccCCCChHHHHHHHHHHHHHh---CCceeEEeEEEeCCCCCeEEEEeccC-CC-CCCCcc--
Q 024006 179 PRVSCAAASADDADLDPCVAELPPRPLLERLAKELRRQL---GLRLFNLDIIREHGTRDQFYVIDINY-FP-GYGKMP-- 251 (274)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lA~~~~~~l---Gl~l~G~Dvi~~~~~g~~~~ViDVN~-fP-g~~g~~-- 251 (274)
.+.+| .....+ + .++.+++|.++..+| ||.++|+|+|- + +|+|||. +| |+.++.
T Consensus 248 --~~~Gg-~~~~~~-------l--~~~~~~ia~~~~~~l~~~GL~~~gVDli~----~---~l~EIN~~sp~g~~~~~~~ 308 (338)
T PRK12458 248 --VHAGG-SVVKHT-------L--TKEELELCEAIRPKLVRDGLFFVGLDIVG----D---KLVEVNVFSPGGLTRINKL 308 (338)
T ss_pred --ccCCC-cccCcC-------C--CHHHHHHHHHHHHHHhhcCCeEEeEEEEC----C---EEEEEeCCCcchHHHHHHH
Confidence 12111 222222 2 356799999999888 99999999981 2 5899998 79 666643
Q ss_pred ---cchHHHHHHHHHHHHhh
Q 024006 252 ---EYEHIFTDFLLSLTQSR 268 (274)
Q Consensus 252 ---~~~~~l~~~l~~~~~~~ 268 (274)
++...+.++|++.++.+
T Consensus 309 ~g~d~a~~i~~~i~~~~~~~ 328 (338)
T PRK12458 309 NKIDFVEDIIEALERKVQRK 328 (338)
T ss_pred hCCCHHHHHHHHHHHHHhHH
Confidence 44678888888877544
No 16
>PRK01966 ddl D-alanyl-alanine synthetase A; Reviewed
Probab=99.83 E-value=5e-19 Score=165.28 Aligned_cols=211 Identities=17% Similarity=0.238 Sum_probs=144.6
Q ss_pred eeeeeccCcHHHHHHHHHHHHhCCCcEEeCc-HHHHHHhcCHHHHHHHHHhccccCCCCCccCCCEEEEecCCCC--hhH
Q 024006 12 FSFLMQLTGKEWRQILEEYRQTHPEVTVLDP-PYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASS--IPD 88 (274)
Q Consensus 12 ~~ilHK~~~~~~~~~l~~y~~~~P~v~Vidp-~~ai~~l~dR~~~~~~L~~~~~~~~~~~I~~P~~~~~~~~~~~--~~~ 88 (274)
|-++|=-.+.. ..+|.+.+. -+++.+-+ ..+...++||..+-+.|++. ||++|++..+.+.... ..+
T Consensus 86 f~~lhG~~ged--g~iq~lle~-~gipy~G~~~~a~~l~~DK~~~k~~l~~~-------GIp~p~~~~~~~~~~~~~~~~ 155 (333)
T PRK01966 86 FPVLHGPPGED--GTIQGLLEL-LGIPYVGCGVLASALSMDKILTKRLLAAA-------GIPVAPYVVLTRGDWEEASLA 155 (333)
T ss_pred EEccCCCCCCC--cHHHHHHHH-cCCCccCCCHHHHHHHhCHHHHHHHHHHc-------CCCCCCEEEEeccccchhhHH
Confidence 44455333322 246677765 46777754 78999999999999999986 8999999988543221 111
Q ss_pred HHHhcCCCCcEEEeeCcCCCCccceeeEEEeChhhHhc-------cCCCeEEEecccCCCeEEEEEEECCEEEEEEEecC
Q 024006 89 VVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKK-------LEPPLVLQEFVNHGGVLFKVYIVGEAIKVVRRFSL 161 (274)
Q Consensus 89 ~l~~~~l~~P~VvKp~~a~Gs~~sh~m~iv~~~~~l~~-------l~~p~vvQefI~h~g~~~KV~VIG~~v~~~~R~S~ 161 (274)
.+ ...++||+|+||..++ | |.++.++.+.++|.. .+.++++||||+ |+++.|.|+|+... . +
T Consensus 156 ~~-~~~~~~P~vVKP~~~g-s--S~Gv~~v~~~~el~~a~~~~~~~~~~vlvEefI~--G~E~~v~vl~~~~~----~-~ 224 (333)
T PRK01966 156 EI-EAKLGLPVFVKPANLG-S--SVGISKVKNEEELAAALDLAFEYDRKVLVEQGIK--GREIECAVLGNDPK----A-S 224 (333)
T ss_pred HH-HHhcCCCEEEEeCCCC-C--ccCEEEECCHHHHHHHHHHHHhcCCcEEEEcCcC--CEEEEEEEECCCCe----E-c
Confidence 11 2468999999999864 3 568999999998864 367899999995 89999999996211 1 1
Q ss_pred CCCcccccccCCceeeecCcccccccC--CcCCCCccccCCCChHHHHHHHHHHHHHhCCc-eeEEeEEEeCCCCCeEEE
Q 024006 162 PDVTKQDLSTSAGVFRFPRVSCAAASA--DDADLDPCVAELPPRPLLERLAKELRRQLGLR-LFNLDIIREHGTRDQFYV 238 (274)
Q Consensus 162 p~~~~~~~~~~~g~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~lA~~~~~~lGl~-l~G~Dvi~~~~~g~~~~V 238 (274)
|. .++....++|+|...+..+... .+..++++. .++++++|.++.++||+. ++.+|++++. +| ++||
T Consensus 225 ~~---~ei~~~~~~~d~~~ky~~~~~~~~~Pa~l~~~~-----~~~i~~~a~~~~~aLg~~G~~rvDf~~~~-~g-~~~v 294 (333)
T PRK01966 225 VP---GEIVKPDDFYDYEAKYLDGSAELIIPADLSEEL-----TEKIRELAIKAFKALGCSGLARVDFFLTE-DG-EIYL 294 (333)
T ss_pred cc---EEEecCCceEcHHHccCCCCceEEeCCCCCHHH-----HHHHHHHHHHHHHHhCCcceEEEEEEEcC-CC-CEEE
Confidence 11 1222223466665544322111 112233222 457899999999999996 6679999975 35 6899
Q ss_pred EeccCCCCCCCcccc
Q 024006 239 IDINYFPGYGKMPEY 253 (274)
Q Consensus 239 iDVN~fPg~~g~~~~ 253 (274)
+|||..||++...-+
T Consensus 295 lEiNt~Pg~t~~s~~ 309 (333)
T PRK01966 295 NEINTMPGFTPISMY 309 (333)
T ss_pred EEeeCCCCCCcccHH
Confidence 999999999876433
No 17
>PRK14569 D-alanyl-alanine synthetase A; Provisional
Probab=99.83 E-value=4.3e-19 Score=163.20 Aligned_cols=204 Identities=15% Similarity=0.162 Sum_probs=138.8
Q ss_pred eeeeeccCcHHHHHHHHHHHHhCCCcEEe-CcHHHHHHhcCHHHHHHHHHhccccCCCCCccCCCEEEEecCCCChhHHH
Q 024006 12 FSFLMQLTGKEWRQILEEYRQTHPEVTVL-DPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVV 90 (274)
Q Consensus 12 ~~ilHK~~~~~~~~~l~~y~~~~P~v~Vi-dp~~ai~~l~dR~~~~~~L~~~~~~~~~~~I~~P~~~~~~~~~~~~~~~l 90 (274)
|-.+|=-.+.. ..++...+.+ +++++ .++++...++||..+-+.|++. ||++|++..+.... .
T Consensus 61 f~~lhG~~ge~--~~i~~~le~~-gip~~Gs~~~a~~l~~DK~~~k~~l~~~-------gIptp~~~~~~~~~----~-- 124 (296)
T PRK14569 61 FVALHGEDGEN--GRVSALLEML-EIKHTSSSMKSSVITMDKMISKEILMHH-------RMPTPMAKFLTDKL----V-- 124 (296)
T ss_pred EEeCCCCCCCC--hHHHHHHHHc-CCCeeCCCHHHHHHHHCHHHHHHHHHHC-------CCCCCCeEEEchhh----h--
Confidence 45566444321 3455666653 56665 4669999999999999999986 89999998875221 1
Q ss_pred HhcCCCCcEEEeeCcCCCCccceeeEEEeChhhHhcc------CCCeEEEecccCCCeEEEEEEECCEEEEE-EEecCCC
Q 024006 91 LKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKKL------EPPLVLQEFVNHGGVLFKVYIVGEAIKVV-RRFSLPD 163 (274)
Q Consensus 91 ~~~~l~~P~VvKp~~a~Gs~~sh~m~iv~~~~~l~~l------~~p~vvQefI~h~g~~~KV~VIG~~v~~~-~R~S~p~ 163 (274)
....++||+|+||..++ | |.++.++.++++|... ..++++|||| .|+++.|.|+|+.+... +..+.
T Consensus 125 ~~~~~~~P~vVKP~~gg-s--s~Gv~~v~~~~eL~~a~~~~~~~~~~lvEefI--~G~E~tv~vl~~~~~~~~~i~~~-- 197 (296)
T PRK14569 125 AEDEISFPVAVKPSSGG-S--SIATFKVKSIQELKHAYEEASKYGEVMIEQWV--TGKEITVAIVNDEVYSSVWIEPQ-- 197 (296)
T ss_pred hHhhcCCCEEEEeCCCC-C--CcCeEEcCCHHHHHHHHHHHHhcCCEEEEccc--ccEEEEEEEECCcCcceEEEecC--
Confidence 12468999999999853 3 6789999999988642 2479999999 58999999999875432 22211
Q ss_pred CcccccccCCceeeecCccccccc-CCcCCCCccccCCCChHHHHHHHHHHHHHhCCc-eeEEeEEEeCCCCCeEEEEec
Q 024006 164 VTKQDLSTSAGVFRFPRVSCAAAS-ADDADLDPCVAELPPRPLLERLAKELRRQLGLR-LFNLDIIREHGTRDQFYVIDI 241 (274)
Q Consensus 164 ~~~~~~~~~~g~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~lA~~~~~~lGl~-l~G~Dvi~~~~~g~~~~ViDV 241 (274)
..++++.......+. ..+..++++ ..++++++|.++.++||+. ++++|++++. +| ++||+||
T Consensus 198 ---------~~~~~~~~k~~~~~~~~~P~~l~~~-----~~~~i~~~a~~~~~~Lg~~G~~rvD~~~~~-~g-~~~vlEI 261 (296)
T PRK14569 198 ---------NEFYDYESKYSGKSIYHSPSGLCEQ-----KELEVRQLAKKAYDLLGCSGHARVDFIYDD-RG-NFYIMEI 261 (296)
T ss_pred ---------CCcCChhhccCCCcEEEeCCCCCHH-----HHHHHHHHHHHHHHHhCCceEEEEEEEEcC-CC-CEEEEEe
Confidence 112232222211100 001112211 1457899999999999987 6679999975 34 6899999
Q ss_pred cCCCCCCCcccch
Q 024006 242 NYFPGYGKMPEYE 254 (274)
Q Consensus 242 N~fPg~~g~~~~~ 254 (274)
|..||++....++
T Consensus 262 N~~Pg~t~~s~~~ 274 (296)
T PRK14569 262 NSSPGMTDNSLSP 274 (296)
T ss_pred eCCCCCCCcCHHH
Confidence 9999998764443
No 18
>PRK05246 glutathione synthetase; Provisional
Probab=99.83 E-value=1.8e-19 Score=167.19 Aligned_cols=194 Identities=15% Similarity=0.199 Sum_probs=131.6
Q ss_pred HHHHHHHhCCCcEEeCcHHHHHHhcCHHHHHHHHHhccccCCCCCccCCCEEEEecCCCChhHHHHhcCCCCcEEEeeCc
Q 024006 26 ILEEYRQTHPEVTVLDPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLV 105 (274)
Q Consensus 26 ~l~~y~~~~P~v~Vidp~~ai~~l~dR~~~~~~L~~~~~~~~~~~I~~P~~~~~~~~~~~~~~~l~~~~l~~P~VvKp~~ 105 (274)
.+.++.+.. +++++|++++++.+.||+.+++.+. ++|+|.+.. +.+.+.+.+...+ |+|+||..
T Consensus 100 ~~l~~le~~-g~~v~N~p~~l~~~~dK~~~~~l~~-----------~vP~T~~~~-~~~~~~~~~~~~~---~vVlKP~~ 163 (316)
T PRK05246 100 YLLERAERP-GTLVVNKPQSLRDANEKLFTLWFPE-----------LMPPTLVTR-DKAEIRAFRAEHG---DIILKPLD 163 (316)
T ss_pred HHHHHHHhC-CCeEECCHHHHHhCccHHHHHhhhc-----------cCCCEEEeC-CHHHHHHHHHHCC---CEEEEECC
Confidence 444555543 8999999999999999999776521 589998764 3333445455444 99999999
Q ss_pred CCCCccceeeEEEeC-hhhH-------hcc-CCCeEEEecccCC-CeEEEEEEECCEEEE-EEEecCCCCcccccccCCc
Q 024006 106 ADGSAKSHELSLAYD-QYSL-------KKL-EPPLVLQEFVNHG-GVLFKVYIVGEAIKV-VRRFSLPDVTKQDLSTSAG 174 (274)
Q Consensus 106 a~Gs~~sh~m~iv~~-~~~l-------~~l-~~p~vvQefI~h~-g~~~KV~VIG~~v~~-~~R~S~p~~~~~~~~~~~g 174 (274)
|+ ++.++..+.. ..++ ... ..|+++|+||+.. +.|+||+|+|+++++ +.+|..+. ++|+++
T Consensus 164 G~---~G~gV~~i~~~~~~~~~~~~~l~~~~~~~~lvQ~~I~~~~~~D~Rv~vv~g~vv~~a~~R~~~~---~~~rtN-- 235 (316)
T PRK05246 164 GM---GGAGIFRVKADDPNLGSILETLTEHGREPVMAQRYLPEIKEGDKRILLVDGEPVGYALARIPAG---GETRGN-- 235 (316)
T ss_pred CC---CccceEEEeCCCccHHHHHHHHHHccCCeEEEEeccccCCCCCEEEEEECCEEhhheeEecCCC---CCcccC--
Confidence 63 5678888844 2222 223 4699999999864 679999999999987 65553221 133332
Q ss_pred eeeecCcccccccCCcCCCCccccCCCChHHHHHHHHHHH---HHhCCceeEEeEEEeCCCCCeEEEEeccCC-C-CCCC
Q 024006 175 VFRFPRVSCAAASADDADLDPCVAELPPRPLLERLAKELR---RQLGLRLFNLDIIREHGTRDQFYVIDINYF-P-GYGK 249 (274)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lA~~~~---~~lGl~l~G~Dvi~~~~~g~~~~ViDVN~f-P-g~~g 249 (274)
.+.+| .....+ + .++.+++|.++. +++|+.++|||++ | . ||+|||.+ | ||++
T Consensus 236 ------~~~Gg-~~~~~~-------l--~~~~~~ia~~~~~~l~~~gl~~~GVDli-----~-~-~l~EvN~~~p~~~~~ 292 (316)
T PRK05246 236 ------LAAGG-RGEATP-------L--TERDREICAAIGPELKERGLIFVGIDVI-----G-D-YLTEINVTSPTGIRE 292 (316)
T ss_pred ------ccCCc-eEeccC-------C--CHHHHHHHHHHHHHHHHhCCCEEEEEEe-----C-C-EEEEEeCCCchHHHH
Confidence 22222 222222 2 245688898888 5779999999999 2 2 59999976 6 8999
Q ss_pred cccc-----hHHHHHHHHHHHH
Q 024006 250 MPEY-----EHIFTDFLLSLTQ 266 (274)
Q Consensus 250 ~~~~-----~~~l~~~l~~~~~ 266 (274)
++.. ...+.+++++.+.
T Consensus 293 ~~~~tg~~ia~~i~~~~~~~~~ 314 (316)
T PRK05246 293 IERLTGVDIAGMLWDAIEAKLA 314 (316)
T ss_pred HHHHhCCCHHHHHHHHHHHHhh
Confidence 8765 3555555555443
No 19
>PRK14568 vanB D-alanine--D-lactate ligase; Provisional
Probab=99.83 E-value=3.5e-19 Score=166.93 Aligned_cols=208 Identities=19% Similarity=0.271 Sum_probs=143.9
Q ss_pred heeeeeccCcHHHHHHHHHHHHhCCCcEEe-CcHHHHHHhcCHHHHHHHHHhccccCCCCCccCCCEEEEecCCCChhHH
Q 024006 11 SFSFLMQLTGKEWRQILEEYRQTHPEVTVL-DPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDV 89 (274)
Q Consensus 11 ~~~ilHK~~~~~~~~~l~~y~~~~P~v~Vi-dp~~ai~~l~dR~~~~~~L~~~~~~~~~~~I~~P~~~~~~~~~~~~~~~ 89 (274)
-|-+||=..+.. ..+|.+.+. -+++.+ .++.+...++||..+.+.|+++ ||++|++..+.+.. +.
T Consensus 94 vf~~lhG~~ged--g~iq~lle~-~gipy~G~~~~asai~~DK~~~k~~l~~~-------GIp~p~~~~~~~~~-~~--- 159 (343)
T PRK14568 94 VFPVLHGKLGED--GAIQGLLEL-SGIPYVGCDIQSSALCMDKSLAYIVAKNA-------GIATPAFWTVTADE-RP--- 159 (343)
T ss_pred EEEcCCCCCCCc--hHHHHHHHH-cCCCccCCCHHHHHHHhCHHHHHHHHHHc-------CcCcCCEEEEECCc-hh---
Confidence 366667555542 456677765 456766 5678999999999999999986 89999999885332 11
Q ss_pred HHhcCCCCcEEEeeCcCCCCccceeeEEEeChhhHhc-------cCCCeEEEecccCCCeEEEEEEECCEE--EEEEEec
Q 024006 90 VLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKK-------LEPPLVLQEFVNHGGVLFKVYIVGEAI--KVVRRFS 160 (274)
Q Consensus 90 l~~~~l~~P~VvKp~~a~Gs~~sh~m~iv~~~~~l~~-------l~~p~vvQefI~h~g~~~KV~VIG~~v--~~~~R~S 160 (274)
....++||+|+||..+ || |.++.++.+.++|.. .+.++++||||+ |+++.|.|+|+.- ....
T Consensus 160 -~~~~l~~P~iVKP~~~-gs--S~Gv~~v~~~~eL~~a~~~a~~~~~~vlVEe~I~--G~E~sv~vl~~~~~~~~~~--- 230 (343)
T PRK14568 160 -DAATLTYPVFVKPARS-GS--SFGVSKVNSADELDYAIESARQYDSKVLIEEAVV--GSEVGCAVLGNGADLVVGE--- 230 (343)
T ss_pred -hhhhcCCCEEEEeCCC-CC--CCCEEEeCCHHHHHHHHHHHHhcCCcEEEECCcC--CEEEEEEEEcCCCCcceec---
Confidence 1246899999999986 34 679999999998864 356899999994 8999999998742 1110
Q ss_pred CCCCcccccccCCceeeecCcccc--cc----cCCcCCCCccccCCCChHHHHHHHHHHHHHhCCc-eeEEeEEEeCCCC
Q 024006 161 LPDVTKQDLSTSAGVFRFPRVSCA--AA----SADDADLDPCVAELPPRPLLERLAKELRRQLGLR-LFNLDIIREHGTR 233 (274)
Q Consensus 161 ~p~~~~~~~~~~~g~~~~~~~~~~--~~----~~~~~~~~~~~~~~~~~~~~~~lA~~~~~~lGl~-l~G~Dvi~~~~~g 233 (274)
..++...+++|+++..... +. ...+..++++. .++++++|.++.++||+. ++.+|++++. +|
T Consensus 231 -----~~~i~~~~~~~~~~~k~~~~~g~~~~~~~~Pa~l~~~~-----~~~i~~~a~~~~~~Lg~~G~~rvDf~l~~-~g 299 (343)
T PRK14568 231 -----VDQIRLSHGFFRIHQENEPEKGSENSTIIVPADISAEE-----RSRVQETAKAIYRALGCRGLARVDMFLQE-DG 299 (343)
T ss_pred -----ceEEecCCCccchhhhhccccCCCCeeEEeCCCCCHHH-----HHHHHHHHHHHHHHhCCCcEEEEEEEEeC-CC
Confidence 0011112345555433211 00 00112222221 357899999999999995 7779999985 45
Q ss_pred CeEEEEeccCCCCCCCcccc
Q 024006 234 DQFYVIDINYFPGYGKMPEY 253 (274)
Q Consensus 234 ~~~~ViDVN~fPg~~g~~~~ 253 (274)
++|++|||..||++....+
T Consensus 300 -~~~llEINt~Pg~t~~S~~ 318 (343)
T PRK14568 300 -TVVLNEVNTLPGFTSYSRY 318 (343)
T ss_pred -CEEEEEeeCCCCCCccCHH
Confidence 6899999999999876444
No 20
>PRK14571 D-alanyl-alanine synthetase A; Provisional
Probab=99.83 E-value=1.2e-18 Score=160.05 Aligned_cols=190 Identities=15% Similarity=0.216 Sum_probs=132.3
Q ss_pred HHHHHHHhCCCcEEeCc-HHHHHHhcCHHHHHHHHHhccccCCCCCccCCCEEEEecCCCChhHHHHhcCCCCcEEEeeC
Q 024006 26 ILEEYRQTHPEVTVLDP-PYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPL 104 (274)
Q Consensus 26 ~l~~y~~~~P~v~Vidp-~~ai~~l~dR~~~~~~L~~~~~~~~~~~I~~P~~~~~~~~~~~~~~~l~~~~l~~P~VvKp~ 104 (274)
.++.+.+.+ +++++.+ +.++..++||..+.+.|+. +|++|++..+.... ....++||+|+||.
T Consensus 70 ~~~~~le~~-gip~~G~~~~a~~i~~DK~~~k~~l~~--------~ip~p~~~~~~~~~-------~~~~l~~P~vvKP~ 133 (299)
T PRK14571 70 TLQAILDFL-GIRYTGSDAFSSMICFDKLLTYRFLKG--------TVEIPDFVEIKEFM-------KTSPLGYPCVVKPR 133 (299)
T ss_pred HHHHHHHHc-CCCccCCCHHHHHHHcCHHHHHHHHhc--------CCCCCCEEEEechh-------hhhhcCCCEEEecC
Confidence 466677664 6888865 8999999999999888763 69999998884211 12458999999999
Q ss_pred cCCCCccceeeEEEeChhhHhcc-------CCCeEEEecccCCCeEEEEEEECCE----EEEEEEecCCCCcccccccCC
Q 024006 105 VADGSAKSHELSLAYDQYSLKKL-------EPPLVLQEFVNHGGVLFKVYIVGEA----IKVVRRFSLPDVTKQDLSTSA 173 (274)
Q Consensus 105 ~a~Gs~~sh~m~iv~~~~~l~~l-------~~p~vvQefI~h~g~~~KV~VIG~~----v~~~~R~S~p~~~~~~~~~~~ 173 (274)
.++| |.++.++.+.++|... ..++++||||+ |+++.|.|+|+. +........ ..
T Consensus 134 ~g~~---s~Gv~~v~~~~el~~~~~~~~~~~~~vlVEeyI~--G~E~sv~vl~~~~~~~vl~~~e~~~----------~~ 198 (299)
T PRK14571 134 REGS---SIGVFICESDEEFQHALKEDLPRYGSVIVQEYIP--GREMTVSILETEKGFEVLPILELRP----------KR 198 (299)
T ss_pred CCCC---cCCEEEECCHHHHHHHHHHHHhhCCcEEEEcccc--ceEEEEEEEcCCCCeeeeceEEEec----------CC
Confidence 8653 5788899999888542 35799999995 999999999763 322221111 11
Q ss_pred ceeeecCcccccccC--CcCCCCccccCCCChHHHHHHHHHHHHHhCC-ceeEEeEEEeCCCCCeEEEEeccCCCCCCCc
Q 024006 174 GVFRFPRVSCAAASA--DDADLDPCVAELPPRPLLERLAKELRRQLGL-RLFNLDIIREHGTRDQFYVIDINYFPGYGKM 250 (274)
Q Consensus 174 g~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~lA~~~~~~lGl-~l~G~Dvi~~~~~g~~~~ViDVN~fPg~~g~ 250 (274)
+++++...+..+... .+..++++. .++++++|.++.++||+ .++++|+++++ | ++||+|||..||++..
T Consensus 199 ~~~~~~~k~~~g~~~~~~p~~l~~~~-----~~~i~~~a~~~~~~lg~~g~~rvD~~~~~--~-~~~viEiN~~Pg~~~~ 270 (299)
T PRK14571 199 RFYDYVAKYTKGETEFILPAPLNPEE-----ERLVKETALKAFVEAGCRGFGRVDGIFSD--G-RFYFLEINTVPGLTEL 270 (299)
T ss_pred CccccccccCCCCeeEEeCCCCCHHH-----HHHHHHHHHHHHHHhCCCceEEEEEEEEC--C-cEEEEEeeCCCCCCcc
Confidence 233333222211110 011222221 35688999999999998 58889999963 3 5899999999999987
Q ss_pred ccch
Q 024006 251 PEYE 254 (274)
Q Consensus 251 ~~~~ 254 (274)
..++
T Consensus 271 s~~~ 274 (299)
T PRK14571 271 SDLP 274 (299)
T ss_pred CHHH
Confidence 6543
No 21
>PRK14016 cyanophycin synthetase; Provisional
Probab=99.82 E-value=2.5e-19 Score=182.72 Aligned_cols=189 Identities=17% Similarity=0.293 Sum_probs=132.3
Q ss_pred eCcHHHHHHhcCHHHHHHHHHhccccCCCCCccCCCEEEEecCCCChhHHHHhcCCCCcEEEeeCcCCCCccceeeEE-E
Q 024006 40 LDPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSL-A 118 (274)
Q Consensus 40 idp~~ai~~l~dR~~~~~~L~~~~~~~~~~~I~~P~~~~~~~~~~~~~~~l~~~~l~~P~VvKp~~a~Gs~~sh~m~i-v 118 (274)
-++..++..+.||..+.+.|++. |||+|++..+. +.+++.+.. ..++||+|+||..|+ ++.+|.+ +
T Consensus 203 ~~s~~a~~i~~DK~~tk~lL~~~-------GIPvP~~~~v~-s~~~a~~~a--~~iG~PvVVKP~~G~---~G~GV~~~v 269 (727)
T PRK14016 203 QTSAIAVDIACDKELTKRLLAAA-------GVPVPEGRVVT-SAEDAWEAA--EEIGYPVVVKPLDGN---HGRGVTVNI 269 (727)
T ss_pred CCcHHHHHHhCCHHHHHHHHHHC-------CcCCCCeeEeC-CHHHHHHHH--HHcCCCEEEEECCCC---CCCceEEec
Confidence 67888999999999999999986 89999998875 322333322 357999999999853 5788998 8
Q ss_pred eChhhHhcc-------CCCeEEEecccCCCeEEEEEEECCEEEEEEEecCCCCcccccc------------c--CCce--
Q 024006 119 YDQYSLKKL-------EPPLVLQEFVNHGGVLFKVYIVGEAIKVVRRFSLPDVTKQDLS------------T--SAGV-- 175 (274)
Q Consensus 119 ~~~~~l~~l-------~~p~vvQefI~h~g~~~KV~VIG~~v~~~~R~S~p~~~~~~~~------------~--~~g~-- 175 (274)
.+++++.+. ..++++|+||+ |.+|||+|+|++++++.|+..+.+..+... . ..|.
T Consensus 270 ~~~~el~~a~~~a~~~~~~viVEe~I~--G~d~Rv~Vvgg~vvaa~~r~~~~v~GDG~~ti~~Li~~~n~~p~rg~~~~~ 347 (727)
T PRK14016 270 TTREEIEAAYAVASKESSDVIVERYIP--GKDHRLLVVGGKLVAAARREPPHVIGDGKHTIRELIEIVNQDPRRGEGHEK 347 (727)
T ss_pred CCHHHHHHHHHHHHHhCCeEEEEEecC--CceEEEEEECCEEEEEEEecCcEEecCCcccHHHHHHHhhcCccccccccC
Confidence 999887642 56899999995 999999999999999988865543211000 0 0000
Q ss_pred -------------------eeec---------------CcccccccCCcCCCCccccCCCChHHHHHHHHHHHHHhCCce
Q 024006 176 -------------------FRFP---------------RVSCAAASADDADLDPCVAELPPRPLLERLAKELRRQLGLRL 221 (274)
Q Consensus 176 -------------------~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lA~~~~~~lGl~l 221 (274)
++.+ +.+.+|. +.+ ... . ..++..++|.++++++|+++
T Consensus 348 ~l~~i~~d~~~~~~l~~~g~~~~sV~~~G~~v~l~~~~N~s~Gg~-~~d--~td---~--i~~~~~~~a~~aa~~~gl~~ 419 (727)
T PRK14016 348 PLTKIKLDDIALLELAKQGYTLDSVPPKGEKVYLRRNANLSTGGT-AID--VTD---E--VHPENAAIAERAAKIIGLDI 419 (727)
T ss_pred cccccCCCHHHHHHHHHcCCCccccCCCCCEEEEeccccccCCCe-eEe--ccc---c--cCHHHHHHHHHHHHhcCCCE
Confidence 0001 1111110 010 000 1 24568999999999999999
Q ss_pred eEEeEEEeCCC----CCeEEEEeccCCCCCCCcc
Q 024006 222 FNLDIIREHGT----RDQFYVIDINYFPGYGKMP 251 (274)
Q Consensus 222 ~G~Dvi~~~~~----g~~~~ViDVN~fPg~~g~~ 251 (274)
+|+|++.++-+ .....|+|||..||+....
T Consensus 420 ~GvDi~~~di~~p~~~~~~~iiEvN~sPgi~~~~ 453 (727)
T PRK14016 420 AGVDVVCEDISKPLEEQGGAIVEVNAAPGLRMHL 453 (727)
T ss_pred EEEEEEecCcccccccCCcEEEEEcCCcchhhcc
Confidence 99999996410 1136899999999998643
No 22
>TIGR02068 cya_phycin_syn cyanophycin synthetase. Cyanophycin synthesis is analogous to polyhydroxyalkanoic acid (PHA) biosynthesis, except that PHA polymers lack nitrogen and may be made under nitrogen-limiting conditions.
Probab=99.80 E-value=3.4e-18 Score=177.33 Aligned_cols=187 Identities=18% Similarity=0.295 Sum_probs=131.2
Q ss_pred CcHHHHHHhcCHHHHHHHHHhccccCCCCCccCCCEEEEecCCCChhHHHHhcCCCCcEEEeeCcCCCCccceeeEE-Ee
Q 024006 41 DPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSL-AY 119 (274)
Q Consensus 41 dp~~ai~~l~dR~~~~~~L~~~~~~~~~~~I~~P~~~~~~~~~~~~~~~l~~~~l~~P~VvKp~~a~Gs~~sh~m~i-v~ 119 (274)
|+..++..+.||..+.+.|++. |||+|++..+. +.+++.+.. ..++||+|+||..|+ .+.++.+ +.
T Consensus 203 ~s~ia~~ia~DK~~tk~lL~~~-------GIpvP~~~~~~-s~~ea~~~~--~~ig~PvVVKP~~g~---~G~GV~l~v~ 269 (864)
T TIGR02068 203 TSAIAVEIACDKDLTKEILSDA-------GVPVPEGTVVQ-SAEDAWEAA--QDLGYPVVIKPYDGN---HGRGVTINIL 269 (864)
T ss_pred CcHHHHHHHcCHHHHHHHHHHc-------CcCCCCEEEEC-CHHHHHHHH--HHcCCCEEEEECCCC---CccCEEEEeC
Confidence 6888999999999999999996 89999999885 322333333 347899999999853 4678888 89
Q ss_pred ChhhHhcc-------CCCeEEEecccCCCeEEEEEEECCEEEEEEEecCCCCccccccc--------C------Cc---e
Q 024006 120 DQYSLKKL-------EPPLVLQEFVNHGGVLFKVYIVGEAIKVVRRFSLPDVTKQDLST--------S------AG---V 175 (274)
Q Consensus 120 ~~~~l~~l-------~~p~vvQefI~h~g~~~KV~VIG~~v~~~~R~S~p~~~~~~~~~--------~------~g---~ 175 (274)
+++++.+. ..++++|+||+ |++|||+|+|++++++.+|-.|++..+...+ | .| .
T Consensus 270 s~~el~~a~~~a~~~~~~vlVEefI~--G~e~rvlVv~~~vvaa~~R~p~~V~GdG~~ti~eLi~~~n~~p~rg~~~~~~ 347 (864)
T TIGR02068 270 TRDEIESAYEAAVEESSGVIVERFIT--GRDHRLLVVGGKVVAVAERVPAHVIGDGVHTIEELIEQINTDPLRGDGHDKP 347 (864)
T ss_pred CHHHHHHHHHHHHhhCCcEEEEEecc--CCEEEEEEECCEEEEEEEecCCceecCccccHHHHHHHhccCcccCccccCC
Confidence 99887642 46899999994 8999999999999998777555543221100 0 00 0
Q ss_pred ------------------eee---------------cCcccccccCCcCCCCccccCCCChHHHHHHHHHHHHHhCCcee
Q 024006 176 ------------------FRF---------------PRVSCAAASADDADLDPCVAELPPRPLLERLAKELRRQLGLRLF 222 (274)
Q Consensus 176 ------------------~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lA~~~~~~lGl~l~ 222 (274)
+.. .|.+.+|. +.+ ... + ..+...++|.++++++||+++
T Consensus 348 l~~i~~d~~~~~~l~~~g~~~~sV~~~g~~v~l~~~~Nls~Gg~-~~d--~td---~--i~~~~~~~a~~aa~~~gl~i~ 419 (864)
T TIGR02068 348 LTKIRLDSTARLELAKQGLTLDSVPAKGRIVYLRATANLSTGGV-AID--RTD---E--IHPENAATAVRAAKIIGLDIA 419 (864)
T ss_pred ccccCCCHHHHHHHHHcCCCccccCCCCCEEEEeccccccCCCc-eEe--ccc---c--cCHHHHHHHHHHHHHhCCCeE
Confidence 000 11111111 000 001 1 135689999999999999999
Q ss_pred EEeEEEeCCC----CCeEEEEeccCCCCCCCc
Q 024006 223 NLDIIREHGT----RDQFYVIDINYFPGYGKM 250 (274)
Q Consensus 223 G~Dvi~~~~~----g~~~~ViDVN~fPg~~g~ 250 (274)
|+|++.++-+ +....|||||+.||+...
T Consensus 420 gvD~i~~di~~~~~~~~~~iiEvN~~p~~~~h 451 (864)
T TIGR02068 420 GVDIVTEDISRPLRDTDGAIVEVNAAPGLRMH 451 (864)
T ss_pred EEEEEecCCCCCccccCcEEEEEcCCcchhhc
Confidence 9999986311 113589999999998755
No 23
>TIGR02291 rimK_rel_E_lig alpha-L-glutamate ligase-related protein. Members of this protein family contain a region of homology to the RimK family of alpha-L-glutamate ligases (TIGR00768), various members of which modify the Glu-Glu C-terminus of ribosomal protein S6, or tetrahydromethanopterin, or a form of coenzyme F420 derivative. Members of this family are found so far in various Vibrio and Pseudomonas species and some other gamma and beta Proteobacteria. The function is unknown.
Probab=99.80 E-value=5.6e-18 Score=156.88 Aligned_cols=194 Identities=12% Similarity=0.072 Sum_probs=122.6
Q ss_pred eCcHHHHHHhcCHHHHHHHHHhccccCCCCCccCCCEEEEecCCCChhHHHHhcCCCC-cEEEeeCcCCCCccceeeEEE
Q 024006 40 LDPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTL-PLVAKPLVADGSAKSHELSLA 118 (274)
Q Consensus 40 idp~~ai~~l~dR~~~~~~L~~~~~~~~~~~I~~P~~~~~~~~~~~~~~~l~~~~l~~-P~VvKp~~a~Gs~~sh~m~iv 118 (274)
.|+-+....+.||+.+.++|.+. ||++|.|..+.+.+..... +.+.--++ |+|+||+.| | ++.++.++
T Consensus 26 ~N~r~~~~~~~DK~~t~~lL~~a-------glpvP~T~~~~s~~~~~~~-l~~~~~~~~~VVVKPl~G--s-~GrGI~~i 94 (317)
T TIGR02291 26 YNKRSLYPLVDDKLKTKIIAQAA-------GITVPELYGVIHNQAEVKT-IHNIVKDHPDFVIKPAQG--S-GGKGILVI 94 (317)
T ss_pred cCCchhccccccHHHHHHHHHHc-------CCCCCCEEEecCchhhHHH-HHHHHccCCCEEEEECCC--C-CccCeEEE
Confidence 45667888899999999999985 8999999988544333222 22221245 699999995 4 78899998
Q ss_pred eChhhH---------------h-----------ccCCC--eEEEecccCC-----------CeEEEEEEECCEEEEEEEe
Q 024006 119 YDQYSL---------------K-----------KLEPP--LVLQEFVNHG-----------GVLFKVYIVGEAIKVVRRF 159 (274)
Q Consensus 119 ~~~~~l---------------~-----------~l~~p--~vvQefI~h~-----------g~~~KV~VIG~~v~~~~R~ 159 (274)
.+.++. . .+..+ .++|||+... ..|+||+|+|+++.++++|
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ly~l~~~~~~~lvE~~i~~~~~~~~~~~~~v~diRV~vv~~~~vaa~~R 174 (317)
T TIGR02291 95 TSRKDGRYRKPSGATINKEEIERHVSNILAGLYSLGGKNDVALIEYRVKFDPCFDGFSYEGVPDIRIIVFKGYPVMAMMR 174 (317)
T ss_pred EeccccccccccccccchHHHHHHHHHHHHHHHhccCCCcEEEEEeeccCCcchhccccCCCCCEEEEEECCEEEEEEEE
Confidence 765321 1 12222 5666776322 3799999999999987555
Q ss_pred -cCC--CCcccccccCCcee---eecCc--ccccccCCcCCCCcc------ccCCCChHHHHHHHHHHHHHhCCceeEEe
Q 024006 160 -SLP--DVTKQDLSTSAGVF---RFPRV--SCAAASADDADLDPC------VAELPPRPLLERLAKELRRQLGLRLFNLD 225 (274)
Q Consensus 160 -S~p--~~~~~~~~~~~g~~---~~~~~--~~~~~~~~~~~~~~~------~~~~~~~~~~~~lA~~~~~~lGl~l~G~D 225 (274)
+.. +|..|- . ..|.. +..+. ...+.........|. ..+.|..+++.++|.++.+++|+.++|+|
T Consensus 175 ~~~~~~~~~tN~-~-~Gg~~~~vdl~tG~l~~~~~~~~~~~~HP~t~~~~~g~~ip~~~el~~la~~A~~~~g~~~~GvD 252 (317)
T TIGR02291 175 LPTRASDGKANL-H-QGAVGVGIDLATGKTIRAVWFNQPITHHPDTGKDLSGLQVPHWERLLELAASCWELTGLGYMGVD 252 (317)
T ss_pred ccCccCCccccc-c-cCCceeeeecCCCccccccccCCccccCCCcccccccCCChhHHHHHHHHHHHHHhcCCCeEEEE
Confidence 321 343321 0 01111 11000 000000000011111 12335557899999999999999999999
Q ss_pred EEEeCCCCCeEEEEeccCCCCCC
Q 024006 226 IIREHGTRDQFYVIDINYFPGYG 248 (274)
Q Consensus 226 vi~~~~~g~~~~ViDVN~fPg~~ 248 (274)
++++.++ .++|+|||..|||+
T Consensus 253 ii~~~~~--g~~VlEVN~~Pg~t 273 (317)
T TIGR02291 253 MVLDKEE--GPLVLELNARPGLA 273 (317)
T ss_pred EEEeCCC--CEEEEEeCCCCCCC
Confidence 9997533 48999999999998
No 24
>KOG1057 consensus Arp2/3 complex-interacting protein VIP1/Asp1, involved in regulation of actin cytoskeleton [Cytoskeleton]
Probab=99.80 E-value=2e-19 Score=177.29 Aligned_cols=203 Identities=23% Similarity=0.345 Sum_probs=152.3
Q ss_pred HHHHHHHHH-hCCCcEEeCcHHHHHHhcCHHHHHHHHHhccccCCCCCccCCCEEEEecCCCC-hhHH-H------HhcC
Q 024006 24 RQILEEYRQ-THPEVTVLDPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASS-IPDV-V------LKAG 94 (274)
Q Consensus 24 ~~~l~~y~~-~~P~v~Vidp~~ai~~l~dR~~~~~~L~~~~~~~~~~~I~~P~~~~~~~~~~~-~~~~-l------~~~~ 94 (274)
..+.++|.+ ++| .|||.+..++.+.||...|++|++. ||++|++.++.++..+ .... + .-.|
T Consensus 104 LdKAiaY~kLRnP--FviNdL~mQyll~DRR~Vy~iLe~~-------gI~~PRya~~nr~~pn~~~~~lie~eD~vEVnG 174 (1018)
T KOG1057|consen 104 LDKAVAYAKLRNP--FVINDLDMQYLLQDRREVYSILEAE-------GIPLPRYAILNRDPPNPKLCNLIEGEDHVEVNG 174 (1018)
T ss_pred hHHHHHHHHhcCC--eeeccccHHHHHHHHHHHHHHHHHc-------CCCCceeEeecCCCCChHHhhhhcCCCeEEEcc
Confidence 368899999 667 9999999999999999999999985 8999999998654321 1111 1 1123
Q ss_pred --CCCcEEEeeCcCCCCccceeeEEEeChhh-------Hhcc---------------CCCeEEEecccCCCeEEEEEEEC
Q 024006 95 --LTLPLVAKPLVADGSAKSHELSLAYDQYS-------LKKL---------------EPPLVLQEFVNHGGVLFKVYIVG 150 (274)
Q Consensus 95 --l~~P~VvKp~~a~Gs~~sh~m~iv~~~~~-------l~~l---------------~~p~vvQefI~h~g~~~KV~VIG 150 (274)
+.-|+|-||+.| +.|+++|.+..+. ++++ ...++++||++.+|.|.|||.||
T Consensus 175 evf~KPFVEKPVs~----EDHNIYIYYPsSaGGGsqrLFRKIgnRSS~y~P~~~vRkeGSyIYEeFMptdgtDVKvYTVG 250 (1018)
T KOG1057|consen 175 EVFQKPFVEKPVSA----EDHNIYIYYPSSAGGGSQRLFRKIGNRSSEYHPDSSVRKEGSYIYEEFMPTDGTDVKVYTVG 250 (1018)
T ss_pred eeccCCcccCCCCc----ccccEEEEecCCCCccHHHHHHHhcccccccCCccccccccceehhhhcCCCCccceEEeeC
Confidence 334999999996 7999999997732 3332 34699999999999999999999
Q ss_pred CEEEEE-EEecCCCCcccccccCCc-eeeecCcccccccCCcCCCCccccCCCChHHHHHHHHHHHHHhCCceeEEeEEE
Q 024006 151 EAIKVV-RRFSLPDVTKQDLSTSAG-VFRFPRVSCAAASADDADLDPCVAELPPRPLLERLAKELRRQLGLRLFNLDIIR 228 (274)
Q Consensus 151 ~~v~~~-~R~S~p~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lA~~~~~~lGl~l~G~Dvi~ 228 (274)
..+..+ .|+| |.++.-.-+..+| ...|+. .++ +..+.+|.+++-|++..++|||+++
T Consensus 251 p~YaHAEaRKS-PvvDGkV~Rns~GKEvRYpv------------------~Ls--~~EK~iA~KVciAF~Q~VCGFDLLR 309 (1018)
T KOG1057|consen 251 PDYAHAEARKS-PVVDGKVERNSDGKEVRYPV------------------ILN--SSEKQIARKVCIAFKQTVCGFDLLR 309 (1018)
T ss_pred cchhhhhhccC-ccccceeeecCCCceeecee------------------ecC--hhhHHHHhHHHhhccccccchHHhh
Confidence 997765 7877 4432211111111 111111 122 3348899999999999999999999
Q ss_pred eCCCCCeEEEEeccCCCCCCCcccchHHHHHHHHH
Q 024006 229 EHGTRDQFYVIDINYFPGYGKMPEYEHIFTDFLLS 263 (274)
Q Consensus 229 ~~~~g~~~~ViDVN~fPg~~g~~~~~~~l~~~l~~ 263 (274)
.+ | .-||||||.|.-.|+..+|+...+..|.+
T Consensus 310 a~--G-~SYVcDVNGfSFVKns~kYYDd~AkIL~~ 341 (1018)
T KOG1057|consen 310 AN--G-KSYVCDVNGFSFVKNSNKYYDDCAKILGK 341 (1018)
T ss_pred cC--C-ceEEEeccceeeeecchhhhHHHHHHHhh
Confidence 75 4 46999999999999999999888888773
No 25
>PRK02471 bifunctional glutamate--cysteine ligase/glutathione synthetase; Provisional
Probab=99.79 E-value=8.2e-18 Score=171.69 Aligned_cols=200 Identities=14% Similarity=0.172 Sum_probs=129.4
Q ss_pred cEEeCcHHHHHHhcCHHHHHHHHHhccccCCCCCccCCCEEEEecCCCChhHHHHhcCCCCcEEEeeCcCCCCccceeeE
Q 024006 37 VTVLDPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELS 116 (274)
Q Consensus 37 v~Vidp~~ai~~l~dR~~~~~~L~~~~~~~~~~~I~~P~~~~~~~~~~~~~~~l~~~~l~~P~VvKp~~a~Gs~~sh~m~ 116 (274)
..-.|+..+...+.||..|.+.|++. ||++|++.++. +.+++...+.. -.+||+|+||..|+ .|.++.
T Consensus 474 ~t~~~s~~s~~~~~DK~~tk~lL~~~-------GIpvP~~~~~~-~~e~a~~~~~~-~~g~PvVVKP~~g~---~G~GV~ 541 (752)
T PRK02471 474 MTSKDNYISPLIMENKVVTKKILAEA-------GFPVPAGDEFT-SLEEALADYSL-FADKAIVVKPKSTN---FGLGIS 541 (752)
T ss_pred ccCCCHHHHHHHhhCHHHHHHHHHHC-------CcCCCCEEEEc-CHHHHHHHHHH-hcCCCEEEEECCCC---CcCCeE
Confidence 34567788888899999999999996 89999999885 32223332322 24899999999853 467888
Q ss_pred EEe---ChhhHhc-------cCCCeEEEecccCCCeEEEEEEECCEEEEEEEecCCCCccccccc--------CC----c
Q 024006 117 LAY---DQYSLKK-------LEPPLVLQEFVNHGGVLFKVYIVGEAIKVVRRFSLPDVTKQDLST--------SA----G 174 (274)
Q Consensus 117 iv~---~~~~l~~-------l~~p~vvQefI~h~g~~~KV~VIG~~v~~~~R~S~p~~~~~~~~~--------~~----g 174 (274)
++. +.+++.+ .+..+++|||| .|++|||+|||++++++.+|..+++..+...+ +. |
T Consensus 542 ~~~~~~~~eel~~A~~~a~~~~~~vlVEEfI--~G~E~Rv~Viggkvvaa~~R~pa~V~GDG~~tI~eLi~~~n~~p~Rg 619 (752)
T PRK02471 542 IFKEPASLEDYEKALEIAFREDSSVLVEEFI--VGTEYRFFVLDGKVEAVLLRVPANVVGDGIHTVRELVAQKNQDPLRG 619 (752)
T ss_pred EecCcCCHHHHHHHHHHHHhcCCcEEEEecc--cCCEEEEEEECCEEEEEEEEeCCccccCcHhhHHHHHHHhcCCcccc
Confidence 764 4555543 25679999999 59999999999999998777556554332111 10 0
Q ss_pred e-----------------------eeecCcccccccCCc---CCCCccc--cCC--CChHHHHHHHHHHHHHhCCceeEE
Q 024006 175 V-----------------------FRFPRVSCAAASADD---ADLDPCV--AEL--PPRPLLERLAKELRRQLGLRLFNL 224 (274)
Q Consensus 175 ~-----------------------~~~~~~~~~~~~~~~---~~~~~~~--~~~--~~~~~~~~lA~~~~~~lGl~l~G~ 224 (274)
. +.++++-..|..... +.++.+. ... .-.+..+++|.++++++|+.++|+
T Consensus 620 ~~~~~~l~~I~~d~~~~~~L~~qg~~l~sVp~~Ge~v~L~~~~NlstGg~~~dvtd~ih~~~~~lA~~aa~~igl~~~Gv 699 (752)
T PRK02471 620 TDHRTPLEKIQLGEIERLMLKQQGLTPDSIPKKGEIVYLRENSNISTGGDSIDMTDDMDDSYKQIAVKAAKALGAKICGV 699 (752)
T ss_pred CcccccccccccCHHHHHHHHHcCCCccccCCCCCEEEecCCCccCCCCeeEecccccCHHHHHHHHHHHHhcCCCEEEE
Confidence 0 011111000000000 0010000 001 124578999999999999999999
Q ss_pred eEEEeCCCC------CeEEEEeccCCCCCCCc
Q 024006 225 DIIREHGTR------DQFYVIDINYFPGYGKM 250 (274)
Q Consensus 225 Dvi~~~~~g------~~~~ViDVN~fPg~~g~ 250 (274)
|++.++-+. ..+.|||||+.||+..-
T Consensus 700 Dii~~di~~p~~~~~~~~~IiEvN~~P~l~mH 731 (752)
T PRK02471 700 DLIIPDLTQPASPEHPNYGIIELNFNPAMYMH 731 (752)
T ss_pred EEEeCCCcccccccCCCeEEEEecCCCchhhc
Confidence 999974211 14789999999996443
No 26
>TIGR01435 glu_cys_lig_rel glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type. gamma-glutamyltripeptides of the form gamma-Glu-Cys-X(aa). The N-terminal region is similar to proteobacterial glutamate-cysteine ligase. The C-terminal region is homologous to cyanophycin synthetase of cyanobacteria and, more distantly, to D-alanine-D-alanine ligases. Members of this family are found in Listeria and Enterococcus, Gram-positive lineages in which glutathione is produced (see PUBMED:8606174), and in Pasteurella multocida, a Proteobacterium. In Clostridium acetobutylicum, adjacent genes include separate proteins rather than a fusion protein.
Probab=99.77 E-value=2.9e-17 Score=166.20 Aligned_cols=194 Identities=13% Similarity=0.188 Sum_probs=124.5
Q ss_pred CcHHHHHHhcCHHHHHHHHHhccccCCCCCccCCCEEEEecCCCChhHHHHhcCC-CCcEEEeeCcCCCCccceeeEEEe
Q 024006 41 DPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGL-TLPLVAKPLVADGSAKSHELSLAY 119 (274)
Q Consensus 41 dp~~ai~~l~dR~~~~~~L~~~~~~~~~~~I~~P~~~~~~~~~~~~~~~l~~~~l-~~P~VvKp~~a~Gs~~sh~m~iv~ 119 (274)
|+..+...+.||..+-+.|++. |||+|.+.++.+.. +...... .+ +||+||||..++ .|.|+.++.
T Consensus 465 tS~ia~~i~~DK~~TK~iL~~a-------GIPVP~g~~~~~~~-~a~~~~~--~~~g~PVVVKP~~g~---~G~GVsi~~ 531 (737)
T TIGR01435 465 DNYVSPLIMENKVVTKKVLAEA-------GFRVPFGDEFSSQA-LALEAFS--LFENKAIVVKPKSTN---YGLGITIFK 531 (737)
T ss_pred ccHHHHHHhcCHHHHHHHHHHc-------CcCCCCEEEECCHH-HHHHHHH--HhcCCCEEEeeCCCC---CcCCeEEec
Confidence 4555678888999999999986 89999999885322 2222222 23 689999999853 366888877
Q ss_pred C---hhhHhc-------cCCCeEEEecccCCCeEEEEEEECCEEEEEEEecCCCCccccccc--------C------Cc-
Q 024006 120 D---QYSLKK-------LEPPLVLQEFVNHGGVLFKVYIVGEAIKVVRRFSLPDVTKQDLST--------S------AG- 174 (274)
Q Consensus 120 ~---~~~l~~-------l~~p~vvQefI~h~g~~~KV~VIG~~v~~~~R~S~p~~~~~~~~~--------~------~g- 174 (274)
+ .+++.+ .+..+++|||| .|++|||+|||+++.++.+|..+++..+...+ + .+
T Consensus 532 ~~~~~eel~~Al~~A~~~~~~VLVEefI--~G~EyRv~VIg~kvvaa~~R~Pa~ViGDG~~TI~eLI~~kN~~p~Rg~~~ 609 (737)
T TIGR01435 532 NGFTLEDFQEALNIAFSEDSSVIIEEFL--PGTEYRFFVLNDKVEAVLLRVPANVTGDGIHTVRELVAEKNTDPLRGTDH 609 (737)
T ss_pred CcCCHHHHHHHHHHHHhcCCeEEEEecc--cCCEEEEEEECCeEEEEEEECCCCEEECCHHHHHHHHHHhccCcccCCcc
Confidence 6 455543 25579999999 59999999999999998777666664432110 1 00
Q ss_pred ee-------------------eecCcccccccCCc---CCCCccc--cCCC--ChHHHHHHHHHHHHHhCCceeEEeEEE
Q 024006 175 VF-------------------RFPRVSCAAASADD---ADLDPCV--AELP--PRPLLERLAKELRRQLGLRLFNLDIIR 228 (274)
Q Consensus 175 ~~-------------------~~~~~~~~~~~~~~---~~~~~~~--~~~~--~~~~~~~lA~~~~~~lGl~l~G~Dvi~ 228 (274)
.. .++++-..|..... +.++.+. ...+ -.+..+++|.++++++|+.++|||+|.
T Consensus 610 ~~pl~~I~~d~~~~~L~~qg~tldsVp~~Ge~V~Lr~~aNlstGG~~iDvTd~ihp~~~~lA~~aa~algl~i~GVDii~ 689 (737)
T TIGR01435 610 RKPLEKITGPEETLMLKEQGLTIDSIPKKEQIVYLRENSNVSTGGDSIDMTDEMDDSYKQIAIRIATAVGAAICGVDLII 689 (737)
T ss_pred cCCcccccchHHHHHHHHcCCCccccCCCCCEEEEcCCCcccCCCceEecccccCHHHHHHHHHHHHhcCCCEEEEEEEe
Confidence 00 00111000000000 0011000 0111 135689999999999999999999998
Q ss_pred eCCCC------CeEEEEeccCCCCCCC
Q 024006 229 EHGTR------DQFYVIDINYFPGYGK 249 (274)
Q Consensus 229 ~~~~g------~~~~ViDVN~fPg~~g 249 (274)
++-+. ..+.|||||.-||+..
T Consensus 690 ~di~~p~~~~~~~~~iiEvN~~P~l~m 716 (737)
T TIGR01435 690 PDETIPDTDKHAIWGVIEANFNPAMHM 716 (737)
T ss_pred cCCCCCccccccceEEEEEcCCcchhh
Confidence 64221 1267999999999644
No 27
>COG1181 DdlA D-alanine-D-alanine ligase and related ATP-grasp enzymes [Cell envelope biogenesis, outer membrane]
Probab=99.75 E-value=6.2e-17 Score=150.34 Aligned_cols=220 Identities=20% Similarity=0.234 Sum_probs=158.7
Q ss_pred hhhheeeeeccCcH-HHHHHHHHHHHhCCCcEEeCcHHHHHHhcCHHHHHHHHHhccccCCCCCccCCCEEEEecCC-CC
Q 024006 8 FVVSFSFLMQLTGK-EWRQILEEYRQTHPEVTVLDPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDA-SS 85 (274)
Q Consensus 8 ~~~~~~ilHK~~~~-~~~~~l~~y~~~~P~v~Vidp~~ai~~l~dR~~~~~~L~~~~~~~~~~~I~~P~~~~~~~~~-~~ 85 (274)
+-+-|-++|-..+. ...|.+.++..- | +|.-|..+-...+||..+-+.+... +++++.++.+..++ .+
T Consensus 62 ~~vvfp~lhG~~gEDg~iqg~le~~gi-P--yvg~gv~~Sa~~mdk~~~K~~~~~~-------g~~~a~~~~~~~~~~~~ 131 (317)
T COG1181 62 ADVVFPVLHGPYGEDGTIQGLLELLGI-P--YVGKGVLASAGAMDKIVTKRLFKAE-------GLPVAPYVALTRDEYSS 131 (317)
T ss_pred CCEEEEeCCCCCCCCchHHHHHHHhCC-C--EecCchhhhhhcccHHHHHHHHHHC-------CCCccceeeeecccchh
Confidence 34557788888543 344555444443 6 8999999999999999877777765 89999999886432 22
Q ss_pred hhHHHHhcCCCCcEEEeeCcCCCCccceeeEEEeChhhHhc-------cCCCeEEEecccCCCeEEEEEEECCEEEEEEE
Q 024006 86 IPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKK-------LEPPLVLQEFVNHGGVLFKVYIVGEAIKVVRR 158 (274)
Q Consensus 86 ~~~~l~~~~l~~P~VvKp~~a~Gs~~sh~m~iv~~~~~l~~-------l~~p~vvQefI~h~g~~~KV~VIG~~v~~~~R 158 (274)
....-...+++||++|||... || |-++..+.+.++++. .+...++|+|++ |+.+.|-++|+.. ....
T Consensus 132 ~~~e~~~~~l~~p~~Vkp~~~-gS--Svg~~~v~~~~d~~~~~e~a~~~d~~vl~e~~~~--~rei~v~vl~~~~-~~~~ 205 (317)
T COG1181 132 VIVEEVEEGLGFPLFVKPARE-GS--SVGRSPVNVEGDLQSALELAFKYDRDVLREQGIT--GREIEVGVLGNDY-EEQA 205 (317)
T ss_pred HHHHHhhcccCCCEEEEcCCc-cc--eeeEEEeeeccchHHHHHHHHHhCCceeeccCCC--cceEEEEecCCcc-ccee
Confidence 211123568999999999884 66 778888888877764 378899999997 9999999999965 1111
Q ss_pred ecCCCCcccccccC-CceeeecCccccccc---CCcCCCCccccCCCChHHHHHHHHHHHHHhC-CceeEEeEEEeCCCC
Q 024006 159 FSLPDVTKQDLSTS-AGVFRFPRVSCAAAS---ADDADLDPCVAELPPRPLLERLAKELRRQLG-LRLFNLDIIREHGTR 233 (274)
Q Consensus 159 ~S~p~~~~~~~~~~-~g~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~lA~~~~~~lG-l~l~G~Dvi~~~~~g 233 (274)
++ .+++... ..+|+|...+..+.. ..++.++++. .++++++|.++.++|| ..+.++|++.+..+|
T Consensus 206 --l~---~~eI~~~~~~fydye~Ky~~~gg~~~~~pa~lt~~~-----~~~i~~lA~~a~~alg~~g~~rvDf~~~~~~g 275 (317)
T COG1181 206 --LP---LGEIPPKGEEFYDYEAKYLSTGGAQYDIPAGLTDEI-----HEEIKELALRAYKALGCLGLARVDFFVDDDEG 275 (317)
T ss_pred --cC---ceEEecCCCeEEeeeccccCCCCceeeCCCCCCHHH-----HHHHHHHHHHHHHhcCCCceEEEEEEEECCCC
Confidence 11 1233333 568888887654221 1112233333 5689999999999999 779999999997445
Q ss_pred CeEEEEeccCCCCCCCcccch
Q 024006 234 DQFYVIDINYFPGYGKMPEYE 254 (274)
Q Consensus 234 ~~~~ViDVN~fPg~~g~~~~~ 254 (274)
++|++|||..|||....-|+
T Consensus 276 -~~~l~EvNt~PG~t~~sl~P 295 (317)
T COG1181 276 -EFVLLEVNTNPGMTAMSLFP 295 (317)
T ss_pred -CEEEEEEeCCCCCcccccch
Confidence 69999999999998887765
No 28
>PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=99.75 E-value=1.3e-16 Score=164.75 Aligned_cols=218 Identities=15% Similarity=0.169 Sum_probs=148.6
Q ss_pred hheeeeeccCcHHHHHHHHHHHHhCCCcEEe-CcHHHHHHhcCHHHHHHHHHhccccCCCCCccCCCEEEEecCC--CCh
Q 024006 10 VSFSFLMQLTGKEWRQILEEYRQTHPEVTVL-DPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDA--SSI 86 (274)
Q Consensus 10 ~~~~ilHK~~~~~~~~~l~~y~~~~P~v~Vi-dp~~ai~~l~dR~~~~~~L~~~~~~~~~~~I~~P~~~~~~~~~--~~~ 86 (274)
+-|-+||=-.+.. ..+|.+.+.. +++.. .+..+...++||..+-+.|++. ||++|++..+.... .+.
T Consensus 529 ~vf~~lhG~~ged--g~iq~~le~~-gipy~Gs~~~asal~~DK~~~K~~l~~~-------GIpt~~~~~~~~~~~~~~~ 598 (809)
T PRK14573 529 VVLPILHGPFGED--GTMQGFLEII-GKPYTGPSLAFSAIAMDKVLTKRFASDV-------GVPVVPYQPLTLAGWKREP 598 (809)
T ss_pred EEEEcCCCCCCCC--hHHHHHHHHc-CCCeeCCCHHHHHHHcCHHHHHHHHHHC-------CCCCCCEEEEechhcccCh
Confidence 3466677665544 3567777653 35554 4788899999999999999986 89999999885321 111
Q ss_pred hHHH--HhcCCCCcEEEeeCcCCCCccceeeEEEeChhhHhc-------cCCCeEEEecccCCCeEEEEEEECCEEEEEE
Q 024006 87 PDVV--LKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKK-------LEPPLVLQEFVNHGGVLFKVYIVGEAIKVVR 157 (274)
Q Consensus 87 ~~~l--~~~~l~~P~VvKp~~a~Gs~~sh~m~iv~~~~~l~~-------l~~p~vvQefI~h~g~~~KV~VIG~~v~~~~ 157 (274)
...+ ....++||+|+||..+ || |.|+.++.++++|.+ .+.++++||||. +|+++.|.|+|+.-...
T Consensus 599 ~~~~~~~~~~lg~P~iVKP~~~-Gs--S~Gv~~v~~~~el~~a~~~a~~~~~~vlVEe~i~-~grEi~v~vl~~~~~~~- 673 (809)
T PRK14573 599 ELCLAHIVEAFSFPMFVKTAHL-GS--SIGVFEVHNVEELRDKISEAFLYDTDVFVEESRL-GSREIEVSCLGDGSSAY- 673 (809)
T ss_pred HHHHHHHHHhcCCCEEEeeCCC-CC--CCCEEEECCHHHHHHHHHHHHhcCCcEEEEeccC-CCEEEEEEEEeCCCCce-
Confidence 1111 1246899999999996 44 579999999998864 357899999986 57999999999863110
Q ss_pred EecCCCCcccccccCCceeeecCcccc-ccc----CCcCCCCccccCCCChHHHHHHHHHHHHHhCCcee-EEeEEEeCC
Q 024006 158 RFSLPDVTKQDLSTSAGVFRFPRVSCA-AAS----ADDADLDPCVAELPPRPLLERLAKELRRQLGLRLF-NLDIIREHG 231 (274)
Q Consensus 158 R~S~p~~~~~~~~~~~g~~~~~~~~~~-~~~----~~~~~~~~~~~~~~~~~~~~~lA~~~~~~lGl~l~-G~Dvi~~~~ 231 (274)
..+.+ .+.....++|+|...+.. +.. ..+..++++. .++++++|.++.++||+.-+ .+|++++.
T Consensus 674 ~~~~~----~e~~~~~~f~dy~~Ky~~~g~~~~~~~~Pa~l~~~~-----~~~i~~~a~~~~~aLg~~G~~riDf~v~~- 743 (809)
T PRK14573 674 VIAGP----HERRGSGGFIDYQEKYGLSGKSSAQIVFDLDLSKES-----QEQVLELAERIYRLLQGKGSCRIDFFLDE- 743 (809)
T ss_pred Eeccc----eEEccCCCeeCchhcccCCCCCceEEecCCCCCHHH-----HHHHHHHHHHHHHHhCCceEEEEEEEEcC-
Confidence 01111 112222357777665521 110 0122333332 46799999999999999955 49999975
Q ss_pred CCCeEEEEeccCCCCCCCcccc
Q 024006 232 TRDQFYVIDINYFPGYGKMPEY 253 (274)
Q Consensus 232 ~g~~~~ViDVN~fPg~~g~~~~ 253 (274)
+| ++|++|||..||++...-+
T Consensus 744 ~g-~~yv~EiNt~PG~t~~s~~ 764 (809)
T PRK14573 744 EG-NFWLSEMNPIPGMTEASPF 764 (809)
T ss_pred CC-CEEEEEeeCCCCCCcccHH
Confidence 35 6899999999999876443
No 29
>PF13535 ATP-grasp_4: ATP-grasp domain; PDB: 3VMM_A 3LN6_A 3LN7_B 2PN1_A 4DIM_A.
Probab=99.69 E-value=6.7e-16 Score=130.18 Aligned_cols=165 Identities=21% Similarity=0.347 Sum_probs=99.7
Q ss_pred HhcCHHHHHHHHHhccccCCCCCccCCCEEEEecCCCChhHHHHhcCCCCcEEEeeCcCCCCccceeeEEEeChhhHhcc
Q 024006 48 HLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKKL 127 (274)
Q Consensus 48 ~l~dR~~~~~~L~~~~~~~~~~~I~~P~~~~~~~~~~~~~~~l~~~~l~~P~VvKp~~a~Gs~~sh~m~iv~~~~~l~~l 127 (274)
++.||..|.+++.+. ||++|++..+.+ .+++.+... .++||+|+||..|.| |.++.++.++++|.+.
T Consensus 1 ~~~dK~~~~~~~~~~-------gv~~P~~~~~~~-~~~~~~~~~--~~~~p~vvKp~~g~g---s~gv~~~~~~~~l~~~ 67 (184)
T PF13535_consen 1 RCNDKYRMRELLKKA-------GVPVPKTRIVDS-EEELRAFAE--DLGFPFVVKPVDGSG---SRGVFIVHSPEELEAA 67 (184)
T ss_dssp -TCCHHHHHHHHHHH-------TS----EEEECS-HHHHHHHHH--HSSSSEEEEESS-ST---TTT-EEESSHHHHHHH
T ss_pred CCCCHHHHHHHHHHc-------CcCCCCEEEECC-HHHHHHHHH--HcCCCEEEEcCcccc---CCCEEEeCCHHHHHHH
Confidence 478999999999986 899999999853 233444333 356999999999754 5789999999998764
Q ss_pred -----------CCCeEEEecccCCCeEEEEEEECCEEEEE--EEecCCCCcccccccCCceeeecCcccccccCCcCCCC
Q 024006 128 -----------EPPLVLQEFVNHGGVLFKVYIVGEAIKVV--RRFSLPDVTKQDLSTSAGVFRFPRVSCAAASADDADLD 194 (274)
Q Consensus 128 -----------~~p~vvQefI~h~g~~~KV~VIG~~v~~~--~R~S~p~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 194 (274)
..++++||||+.....+.+++.++++++. .+... ... ... ..+ ...+. ....+
T Consensus 68 ~~~~~~~~~~~~~~~ivqe~i~g~e~~~~~~~~~G~~~~~~~~~~~~-~~~-~~~--~~~-------~~~~~---~~~~~ 133 (184)
T PF13535_consen 68 LAEIREDSPLGNGPVIVQEYIPGDEYSVDGVVDDGEVVFAGISRYVR-QSP-GHF--SGG-------VPTGY---SVPSE 133 (184)
T ss_dssp HHHHHHHHS-HSSSEEEEE---SEEEEEEEEEETTEEEEEEEEEEEE-EET-CCC--SSS-------EEEEE---EES--
T ss_pred HHHHHHhcccCCccEEEEEeeeeeeEEEEEEEEcceEEEEEEEEEec-ccc-ccc--ccc-------eeeee---ecccc
Confidence 35799999997333345556667776542 22211 100 000 000 00000 00000
Q ss_pred ccccCCCChHHHHHHHHHHHHHhCC--ceeEEeEEEeCCCCCeEEEEeccCCCC
Q 024006 195 PCVAELPPRPLLERLAKELRRQLGL--RLFNLDIIREHGTRDQFYVIDINYFPG 246 (274)
Q Consensus 195 ~~~~~~~~~~~~~~lA~~~~~~lGl--~l~G~Dvi~~~~~g~~~~ViDVN~fPg 246 (274)
.+..+++++++.++.+++|+ -++++|++.+.+ | +++++|||.-||
T Consensus 134 -----~~~~~~~~~~~~~~~~~~g~~~G~~~id~~~~~~-g-~~~~iEiN~R~~ 180 (184)
T PF13535_consen 134 -----PPLPEELRDLARKLLRALGYRNGFFHIDFIVDPD-G-ELYFIEINPRFG 180 (184)
T ss_dssp -----CEHHHHHHHHHHHHHHHHT--SEEEEEEEEEETC-C-EEEEEEEESS--
T ss_pred -----cccHHHHHHHHHHHHHHcCCceEEEEEEEEEeCC-C-CEEEEEECccCC
Confidence 11136789999999999999 578899999974 6 799999998776
No 30
>TIGR01161 purK phosphoribosylaminoimidazole carboxylase, PurK protein. Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, N5-carboxyaminoimidazole ribonucleotide synthetase, which hydrolyzes ATP and converts AIR to N5-CAIR. PurE converts N5-CAIR to CAIR. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP.
Probab=99.67 E-value=5.6e-15 Score=138.68 Aligned_cols=178 Identities=17% Similarity=0.267 Sum_probs=123.9
Q ss_pred CcEEeCcHHHHHHhcCHHHHHHHHHhccccCCCCCccCCCEEEEecCCCChhHHHHhcCCCCcEEEeeCcCCCCccceee
Q 024006 36 EVTVLDPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHEL 115 (274)
Q Consensus 36 ~v~Vidp~~ai~~l~dR~~~~~~L~~~~~~~~~~~I~~P~~~~~~~~~~~~~~~l~~~~l~~P~VvKp~~a~Gs~~sh~m 115 (274)
++++..+.++++.++||..+-+.|+++ ||++|++..+++ .+++.+.. ..++||+|+||..+ |+ ++.++
T Consensus 83 g~~~~p~~~~~~~~~dK~~~k~~l~~~-------gip~p~~~~~~~-~~~~~~~~--~~~g~P~vvKp~~~-g~-~g~Gv 150 (352)
T TIGR01161 83 GVKLFPSPDALAIIQDRLTQKQFLQKL-------GLPVPPFLVIKD-EEELDAAL--QELGFPVVLKARTG-GY-DGRGQ 150 (352)
T ss_pred CCeECCCHHHHHHhcCHHHHHHHHHHc-------CCCCCCccEeCC-HHHHHHHH--HHcCCCEEEEeCCC-CC-CCCCE
Confidence 467889999999999999999999886 899999999863 22333322 35789999999985 22 46799
Q ss_pred EEEeChhhHhcc-----CCCeEEEecccCCCeEEEEEEECC---EEEEEEEecCCCCcccccccCCceeeecCccccccc
Q 024006 116 SLAYDQYSLKKL-----EPPLVLQEFVNHGGVLFKVYIVGE---AIKVVRRFSLPDVTKQDLSTSAGVFRFPRVSCAAAS 187 (274)
Q Consensus 116 ~iv~~~~~l~~l-----~~p~vvQefI~h~g~~~KV~VIG~---~v~~~~R~S~p~~~~~~~~~~~g~~~~~~~~~~~~~ 187 (274)
.++.+++++... +.++++||||+ .|+++.|.++.+ ++.. .|-. +.....|...++.
T Consensus 151 ~~v~~~~el~~a~~~~~~~~~lvEe~I~-~~~E~sv~~~~~~~G~~~~-----~~~~---~~~~~~g~~~~~~------- 214 (352)
T TIGR01161 151 YRIRNEADLPQAAKELGDRECIVEEFVP-FERELSVIVARSADGETAF-----YPVV---ENIHQDGILRYVV------- 214 (352)
T ss_pred EEECCHHHHHHHHHhcCCCcEEEEecCC-CCeEEEEEEEEcCCCCEEE-----ECCc---ccEEeCCEEEEEE-------
Confidence 999999988653 34899999996 378888887632 3322 1110 1000112221110
Q ss_pred CCcCCCCccccCCCChHHHHHHHHHHHHHhCCc-eeEEeEEEeCCCCCeEEEEeccCCCCCCC
Q 024006 188 ADDADLDPCVAELPPRPLLERLAKELRRQLGLR-LFNLDIIREHGTRDQFYVIDINYFPGYGK 249 (274)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~lA~~~~~~lGl~-l~G~Dvi~~~~~g~~~~ViDVN~fPg~~g 249 (274)
.+..++++. .++++++|.++.++||+. ++++|++++. +| ++||+|||.-||=.|
T Consensus 215 -~p~~~~~~~-----~~~~~~~a~~i~~~l~~~G~~~ve~~~~~-dg-~~~v~EinpR~~~sg 269 (352)
T TIGR01161 215 -APAAVPDAI-----QARAEEIARRLMEELGYVGVLAVEMFVLP-DG-RLLINELAPRVHNSG 269 (352)
T ss_pred -CCCCCCHHH-----HHHHHHHHHHHHHHcCceeEEEEEEEEeC-CC-cEEEEEecCCCCCcC
Confidence 111222211 456899999999999996 7789999985 35 589999999998444
No 31
>PRK12767 carbamoyl phosphate synthase-like protein; Provisional
Probab=99.66 E-value=1.1e-14 Score=134.51 Aligned_cols=166 Identities=23% Similarity=0.328 Sum_probs=117.3
Q ss_pred EEeCcHHHHHHhcCHHHHHHHHHhccccCCCCCccCCCEEEEecCCCChhHHHHhcCCCCcEEEeeCcCCCCccceeeEE
Q 024006 38 TVLDPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSL 117 (274)
Q Consensus 38 ~Vidp~~ai~~l~dR~~~~~~L~~~~~~~~~~~I~~P~~~~~~~~~~~~~~~l~~~~l~~P~VvKp~~a~Gs~~sh~m~i 117 (274)
++.+++++++.+.||..|.+.|.+. ||++|++..+.+ .+++.+.+....++||+|+||..|+ +|.++.+
T Consensus 98 ~~~~~~~~~~~~~dK~~~~~~l~~~-------gip~p~~~~~~~-~~~~~~~~~~~~~~~P~viKP~~g~---~s~gv~~ 166 (326)
T PRK12767 98 VLVSSKEVIEICNDKWLTYEFLKEN-------GIPTPKSYLPES-LEDFKAALAKGELQFPLFVKPRDGS---ASIGVFK 166 (326)
T ss_pred EEeCCHHHHHHHhcHHHHHHHHHHc-------CCCCCCEEcccC-HHHHHhhhhcccCCCCEEEEeCCCC---CccCeEE
Confidence 5689999999999999999999996 899999988752 2223222223568999999998854 4678999
Q ss_pred EeChhhHhcc---CCCeEEEecccCCCeEEEEEEE---CCEEEE-EEEecCCCCcccccccCCceeeecCcccccccCCc
Q 024006 118 AYDQYSLKKL---EPPLVLQEFVNHGGVLFKVYIV---GEAIKV-VRRFSLPDVTKQDLSTSAGVFRFPRVSCAAASADD 190 (274)
Q Consensus 118 v~~~~~l~~l---~~p~vvQefI~h~g~~~KV~VI---G~~v~~-~~R~S~p~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 190 (274)
+.+.+++.+. ..++++|||| .|.++.+-++ ++++++ ..+..+.- ..|. .. ..
T Consensus 167 v~~~~el~~~~~~~~~~lvqeyi--~G~e~~v~~~~~~~G~~~~~~~~~~~~~--------~~g~-----~~------~~ 225 (326)
T PRK12767 167 VNDKEELEFLLEYVPNLIIQEFI--EGQEYTVDVLCDLNGEVISIVPRKRIEV--------RAGE-----TS------KG 225 (326)
T ss_pred eCCHHHHHHHHHhCCCeEEEecc--CCceEEEEEEEcCCCCEEEEEEeeeeee--------cCCc-----ee------EE
Confidence 9999998653 3589999999 5777776554 345543 23332210 0000 00 00
Q ss_pred CCCCccccCCCChHHHHHHHHHHHHHhCCc-eeEEeEEEeCCCCCeEEEEeccCCCC
Q 024006 191 ADLDPCVAELPPRPLLERLAKELRRQLGLR-LFNLDIIREHGTRDQFYVIDINYFPG 246 (274)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~lA~~~~~~lGl~-l~G~Dvi~~~~~g~~~~ViDVN~fPg 246 (274)
. .. +.+++.+++.++.++||++ ++++|+++++ | +++++|+|.-++
T Consensus 226 ~-------~~-~~~~i~~~~~~i~~~lg~~G~~~vd~~~~~--g-~~~viEiNpR~~ 271 (326)
T PRK12767 226 V-------TV-KDPELFKLAERLAEALGARGPLNIQCFVTD--G-EPYLFEINPRFG 271 (326)
T ss_pred E-------Ec-CCHHHHHHHHHHHHhcCCeeeEEEEEEEEC--C-eEEEEEEeCCCC
Confidence 0 00 1356899999999999996 7789999985 4 589999997544
No 32
>PRK06019 phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed
Probab=99.65 E-value=4e-15 Score=140.95 Aligned_cols=184 Identities=18% Similarity=0.226 Sum_probs=129.2
Q ss_pred HHHHhCCCcEEeCcHHHHHHhcCHHHHHHHHHhccccCCCCCccCCCEEEEecCCCChhHHHHhcCCCCcEEEeeCcCCC
Q 024006 29 EYRQTHPEVTVLDPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADG 108 (274)
Q Consensus 29 ~y~~~~P~v~Vidp~~ai~~l~dR~~~~~~L~~~~~~~~~~~I~~P~~~~~~~~~~~~~~~l~~~~l~~P~VvKp~~a~G 108 (274)
++++++ ..+..++++++.++||..+-+.|+++ ||++|++..+++ .+++.+.. ..++||+|+||..+ |
T Consensus 80 ~~l~~~--~~~~p~~~~~~~~~dK~~~k~~l~~~-------Gip~p~~~~v~s-~~~l~~~~--~~~g~P~vlKp~~~-g 146 (372)
T PRK06019 80 DALAAR--VPVPPGPDALAIAQDRLTEKQFLDKL-------GIPVAPFAVVDS-AEDLEAAL--ADLGLPAVLKTRRG-G 146 (372)
T ss_pred HHHhcC--CeeCcCHHHHHHhcCHHHHHHHHHHC-------CCCCCCceEeCC-HHHHHHHH--HHcCCcEEEEeCCC-C
Confidence 445554 46889999999999999999999986 899999999853 22333322 35899999999884 3
Q ss_pred CccceeeEEEeChhhHhcc-----CCCeEEEecccCCCeEEEEEEECC---EEEEEEEecCCCCcccccccCCceeeecC
Q 024006 109 SAKSHELSLAYDQYSLKKL-----EPPLVLQEFVNHGGVLFKVYIVGE---AIKVVRRFSLPDVTKQDLSTSAGVFRFPR 180 (274)
Q Consensus 109 s~~sh~m~iv~~~~~l~~l-----~~p~vvQefI~h~g~~~KV~VIG~---~v~~~~R~S~p~~~~~~~~~~~g~~~~~~ 180 (274)
+ +|+++.++.+++++... ..++++||||+ .++++.|.++.+ ++.. .|-. +-....|.+.++.
T Consensus 147 ~-~g~Gv~~v~~~~el~~a~~~~~~~~~ivEe~I~-~~~E~sv~~~~~~~G~~~~-----~p~~---e~~~~~gi~~~~~ 216 (372)
T PRK06019 147 Y-DGKGQWVIRSAEDLEAAWALLGSVPCILEEFVP-FEREVSVIVARGRDGEVVF-----YPLV---ENVHRNGILRTSI 216 (372)
T ss_pred c-CCCCeEEECCHHHHHHHHHhcCCCCEEEEecCC-CCeEEEEEEEECCCCCEEE-----eCCc---ccEEeCCEEEEEE
Confidence 3 57899999999988653 45899999996 378899887754 2321 1100 1001123332211
Q ss_pred cccccccCCcCCCCccccCCCChHHHHHHHHHHHHHhCCc-eeEEeEEEeCCCCCeEEEEeccCCCCCCCc
Q 024006 181 VSCAAASADDADLDPCVAELPPRPLLERLAKELRRQLGLR-LFNLDIIREHGTRDQFYVIDINYFPGYGKM 250 (274)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lA~~~~~~lGl~-l~G~Dvi~~~~~g~~~~ViDVN~fPg~~g~ 250 (274)
.+..++++. .++++++|.++.++||+. ++++|++++. +| ++||+|+|.-|+-.|.
T Consensus 217 --------~pa~~~~~~-----~~~~~~~a~~i~~~L~~~G~~~vEff~~~-dg-~~~v~EinpR~~~sg~ 272 (372)
T PRK06019 217 --------APARISAEL-----QAQAEEIASRIAEELDYVGVLAVEFFVTG-DG-ELLVNEIAPRPHNSGH 272 (372)
T ss_pred --------CCCCCCHHH-----HHHHHHHHHHHHHHcCccceeEEEEEEcC-CC-eEEEEEecCCccCccc
Confidence 111222222 467899999999999987 7789999974 45 6999999999986554
No 33
>TIGR01142 purT phosphoribosylglycinamide formyltransferase 2. This enzyme is an alternative to PurN (TIGR00639)
Probab=99.63 E-value=1.1e-14 Score=137.50 Aligned_cols=179 Identities=15% Similarity=0.216 Sum_probs=121.8
Q ss_pred CcEEeCcHHHHHHhcCHHHHHHHH-HhccccCCCCCccCCCEEEEecCCCChhHHHHhcCCCCcEEEeeCcCCCCcccee
Q 024006 36 EVTVLDPPYAIQHLHNRQSMLQCV-ADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHE 114 (274)
Q Consensus 36 ~v~Vidp~~ai~~l~dR~~~~~~L-~~~~~~~~~~~I~~P~~~~~~~~~~~~~~~l~~~~l~~P~VvKp~~a~Gs~~sh~ 114 (274)
++++..++++++.++||..+.+.+ .++ ||++|++..+.+ .+++.+.. ..++||+|+||..++ +|.+
T Consensus 85 g~~~~~~~~~~~~~~dK~~~~~~~~~~~-------gip~p~~~~~~~-~~~~~~~~--~~~g~P~VvKP~~g~---~s~g 151 (380)
T TIGR01142 85 GYFVVPNARATKLTMNREGIRRLAAEEL-------GLPTSRYMFADS-LDELREAV--EKIGYPCVVKPVMSS---SGKG 151 (380)
T ss_pred CCeeCCCHHHHHHhhCHHHHHHHHHHHC-------CCCCCCceEeCC-HHHHHHHH--HHcCCCEEEEECCCc---CCCC
Confidence 567788999999999999988875 565 899999998853 22333322 368999999999754 4678
Q ss_pred eEEEeChhhHhcc-----------CCCeEEEecccCCCeEEEEEEE---CCEEEEEEEecCCCCcccccccCCceeeecC
Q 024006 115 LSLAYDQYSLKKL-----------EPPLVLQEFVNHGGVLFKVYIV---GEAIKVVRRFSLPDVTKQDLSTSAGVFRFPR 180 (274)
Q Consensus 115 m~iv~~~~~l~~l-----------~~p~vvQefI~h~g~~~KV~VI---G~~v~~~~R~S~p~~~~~~~~~~~g~~~~~~ 180 (274)
+.++.++++|... +.++++||||+ .+.++.|.++ ++++... ....+.. ..+.+..
T Consensus 152 v~~v~~~~el~~~~~~~~~~~~~~~~~~ivEe~i~-~~~E~sv~~~~~~~g~~~~~--~~~~~~~------~~~~~~~-- 220 (380)
T TIGR01142 152 QSVVRGPEDIEKAWEYAQEGARGGAGRVIVEEFID-FDYEITLLTVRHVDGNTTFC--APIGHRQ------IDGDYHE-- 220 (380)
T ss_pred eEEECCHHHHHHHHHHHHhhccCCCCCEEEEEecC-CCEEEEEEEEEcCCCCEEEe--cCcceEE------eCCeeEE--
Confidence 9999999988542 35799999996 3688888877 2332211 1110100 0111110
Q ss_pred cccccccCCcCCCCccccCCCChHHHHHHHHHHHHHhCCc-eeEEeEEEeCCCCCeEEEEeccCCCCCCCccc
Q 024006 181 VSCAAASADDADLDPCVAELPPRPLLERLAKELRRQLGLR-LFNLDIIREHGTRDQFYVIDINYFPGYGKMPE 252 (274)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lA~~~~~~lGl~-l~G~Dvi~~~~~g~~~~ViDVN~fPg~~g~~~ 252 (274)
...+..++++. .++++++|.++.++||.. ++++|++.++ + .+||+|||.-||-.+...
T Consensus 221 ------~~~p~~l~~~~-----~~~i~~~a~~~~~~l~~~G~~~ie~~~~~-~--~~~viEinpR~~~~~~~~ 279 (380)
T TIGR01142 221 ------SWQPQEMSEKA-----LEEAQRIAKRITDALGGYGLFGVELFVKG-D--EVIFSEVSPRPHDTGMVT 279 (380)
T ss_pred ------EECCCCCCHHH-----HHHHHHHHHHHHHHcCCcceEEEEEEEEC-C--cEEEEEeecCCCCCceEE
Confidence 00111222221 356789999999999984 6789999974 2 489999999999776654
No 34
>PLN02948 phosphoribosylaminoimidazole carboxylase
Probab=99.60 E-value=3.8e-14 Score=141.38 Aligned_cols=179 Identities=13% Similarity=0.121 Sum_probs=125.4
Q ss_pred CcEEeCcHHHHHHhcCHHHHHHHHHhccccCCCCCccCCCEEEEecCCCChhHHHHhcCCCCcEEEeeCcCCCCccceee
Q 024006 36 EVTVLDPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHEL 115 (274)
Q Consensus 36 ~v~Vidp~~ai~~l~dR~~~~~~L~~~~~~~~~~~I~~P~~~~~~~~~~~~~~~l~~~~l~~P~VvKp~~a~Gs~~sh~m 115 (274)
++++..++++++.++||+.+-+.|.++ ||++|++..+.+ .+++.+.. ..++||+|+||..+ |+ +|.++
T Consensus 106 gi~v~ps~~al~i~~DK~~~K~~l~~~-------GIptp~~~~v~~-~~el~~~~--~~ig~P~VvKP~~g-gs-~g~Gv 173 (577)
T PLN02948 106 GVDVQPKSSTIRIIQDKYAQKVHFSKH-------GIPLPEFMEIDD-LESAEKAG--DLFGYPLMLKSRRL-AY-DGRGN 173 (577)
T ss_pred CCccCCCHHHHHHhcCHHHHHHHHHHC-------CcCCCCeEEeCC-HHHHHHHH--HhcCCcEEEEeCCC-CC-CCCCe
Confidence 456789999999999999999999986 899999998852 22333322 35899999999884 33 47789
Q ss_pred EEEeChhhHhcc-------CCCeEEEecccCCCeEEEEEEECC---EEEEEEEecCCCCcccccccCCceeeecCccccc
Q 024006 116 SLAYDQYSLKKL-------EPPLVLQEFVNHGGVLFKVYIVGE---AIKVVRRFSLPDVTKQDLSTSAGVFRFPRVSCAA 185 (274)
Q Consensus 116 ~iv~~~~~l~~l-------~~p~vvQefI~h~g~~~KV~VIG~---~v~~~~R~S~p~~~~~~~~~~~g~~~~~~~~~~~ 185 (274)
.++.++++|... +.++++|+||+ ..+++-|.|+++ ++.. .|.. +.....+.+.+..
T Consensus 174 ~~v~~~~eL~~a~~~~~~~~~~vlvEefI~-~~~EisV~v~r~~~G~i~~-----~p~~---E~~~~~~~~~~~~----- 239 (577)
T PLN02948 174 AVAKTEEDLSSAVAALGGFERGLYAEKWAP-FVKELAVMVARSRDGSTRC-----YPVV---ETIHKDNICHVVE----- 239 (577)
T ss_pred EEECCHHHHHHHHHHhhCCCCcEEEEecCC-CCeEEEEEEEECCCCCEEE-----ecCc---ccEEECCeeEEEE-----
Confidence 999999988542 45899999995 358999988853 2322 1211 1001111221100
Q ss_pred ccCCcCCCCccccCCCChHHHHHHHHHHHHHhCCc-eeEEeEEEeCCCCCeEEEEeccCCCCCCCc
Q 024006 186 ASADDADLDPCVAELPPRPLLERLAKELRRQLGLR-LFNLDIIREHGTRDQFYVIDINYFPGYGKM 250 (274)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~lA~~~~~~lGl~-l~G~Dvi~~~~~g~~~~ViDVN~fPg~~g~ 250 (274)
.+..++++. .++++++|.++.++||.. ++.+|++++. +| ++||+|||.-||..|.
T Consensus 240 ---~Pa~l~~~~-----~~~~~~~A~~~~~aLg~~Gv~~vEffv~~-dG-~v~v~EInpRpg~sGh 295 (577)
T PLN02948 240 ---APANVPWKV-----AKLATDVAEKAVGSLEGAGVFGVELFLLK-DG-QILLNEVAPRPHNSGH 295 (577)
T ss_pred ---ECCCCCHHH-----HHHHHHHHHHHHHHhCCCeEEEEEEEEcC-CC-cEEEEEEeCCCCCCCc
Confidence 122233322 467899999999999977 5679999975 45 6899999999996663
No 35
>PRK06849 hypothetical protein; Provisional
Probab=99.60 E-value=8.5e-14 Score=132.33 Aligned_cols=169 Identities=18% Similarity=0.273 Sum_probs=115.4
Q ss_pred EEeCcHHHHHHhcCHHHHHHHHHhccccCCCCCccCCCEEEEecCCCChhHHHHhcCCCCcEEEeeCcCCCCccceeeEE
Q 024006 38 TVLDPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSL 117 (274)
Q Consensus 38 ~Vidp~~ai~~l~dR~~~~~~L~~~~~~~~~~~I~~P~~~~~~~~~~~~~~~l~~~~l~~P~VvKp~~a~Gs~~sh~m~i 117 (274)
+...+.++++.++||..+.+.+.++ ||++|++..+++ .+++.+ +.....+||+|+||..++| ++++.+
T Consensus 103 v~~~~~~~~~~~~DK~~~~~~~~~~-------GipvP~t~~v~~-~~~l~~-~~~~~~~~P~vlKP~~~~~---~~~v~~ 170 (389)
T PRK06849 103 VLHFDFELLLLLHNKWEFAEQARSL-------GLSVPKTYLITD-PEAIRN-FMFKTPHTPYVLKPIYSRF---VRRVDL 170 (389)
T ss_pred EEcCCHHHHHHhhCHHHHHHHHHHc-------CCCCCCEEEeCC-HHHHHH-HhhcCCCCcEEEEeCcccC---CCeEEE
Confidence 3468899999999999999999986 899999999853 223332 2222248999999999754 457777
Q ss_pred EeChhhHhcc----CCCeEEEecccCCCeEEEEEEECCEEEEE-EEecCCCCcccccccCCceeeecCcccccccCCcCC
Q 024006 118 AYDQYSLKKL----EPPLVLQEFVNHGGVLFKVYIVGEAIKVV-RRFSLPDVTKQDLSTSAGVFRFPRVSCAAASADDAD 192 (274)
Q Consensus 118 v~~~~~l~~l----~~p~vvQefI~h~g~~~KV~VIG~~v~~~-~R~S~p~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 192 (274)
+.+++.+..+ ..|+++||||+......-.++.++++.+. .++. .... ..|. . ..
T Consensus 171 ~~~~~~l~~~~~~~~~~~ivQe~I~G~e~~~~~~~~~G~v~~~~~~~~--~~~~-----~~~~-----------~---~~ 229 (389)
T PRK06849 171 LPKEAALKELPISKDNPWVMQEFIQGKEYCSYSIVRSGELRAHSCYKP--EYCA-----GSGA-----------Q---IA 229 (389)
T ss_pred ecCHHHhcccccCCCCCeEEEEEecCCeEEEEEEEECCEEEEEEEeec--cccC-----CCCc-----------e---eE
Confidence 8888777765 35799999996333333445556776543 2211 1100 0000 0 00
Q ss_pred CCccccCCCChHHHHHHHHHHHHHhCCc-eeEEeEEEeCCCCCeEEEEeccCCCC
Q 024006 193 LDPCVAELPPRPLLERLAKELRRQLGLR-LFNLDIIREHGTRDQFYVIDINYFPG 246 (274)
Q Consensus 193 ~~~~~~~~~~~~~~~~lA~~~~~~lGl~-l~G~Dvi~~~~~g~~~~ViDVN~fPg 246 (274)
..+ . ..+++++++.++.++||++ .++||++.+. +| ++|++|||.=++
T Consensus 230 ~~~----~-~~~~l~~~~~~~~~~l~~~G~~~~df~~~~-~g-~~~~iEiNpR~~ 277 (389)
T PRK06849 230 FQP----I-NHPRIEEFVTHFVKELNYTGQISFDFIETE-NG-DAYPIECNPRTT 277 (389)
T ss_pred eEE----C-CcHHHHHHHHHHHHhcCceeEEEEEEEECC-CC-CEEEEEecCCCC
Confidence 000 0 1357899999999999999 7789999874 56 699999998776
No 36
>PRK07206 hypothetical protein; Provisional
Probab=99.57 E-value=2.2e-13 Score=130.30 Aligned_cols=185 Identities=18% Similarity=0.221 Sum_probs=123.2
Q ss_pred HHhCCCcEEeCcHHHHHHhcCHHHHHHHHHhccccCCCCCccCCCEEEEecCCCChhHHHHhcCCCC---cEEEeeCcCC
Q 024006 31 RQTHPEVTVLDPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTL---PLVAKPLVAD 107 (274)
Q Consensus 31 ~~~~P~v~Vidp~~ai~~l~dR~~~~~~L~~~~~~~~~~~I~~P~~~~~~~~~~~~~~~l~~~~l~~---P~VvKp~~a~ 107 (274)
+.++-+.++-++++++..++||+.|.+.|.++ ||++|++..+. +.++..+.+.. ++| |+|+||..|+
T Consensus 88 l~~~l~l~~~~~~~~~~~~~dK~~~r~~l~~~-------gi~~p~~~~~~-~~~e~~~~~~~--~g~~~~P~VvKP~~g~ 157 (416)
T PRK07206 88 LAEILTPQYSNDPALSSARRNKAEMINALAEA-------GLPAARQINTA-DWEEAEAWLRE--NGLIDRPVVIKPLESA 157 (416)
T ss_pred HHHhcCCCcCCChhhHHHhhCHHHHHHHHHHc-------CCCcccEEecC-CHHHHHHHHHh--cCCCCCCEEEeCCCCC
Confidence 34444556678999999999999999999986 89999999885 33334443433 455 9999999865
Q ss_pred CCccceeeEEEeChhhHhcc--------------CCCeEEEecccCCCeEEEEEEE--CCEEEE--EEEecCCCCccccc
Q 024006 108 GSAKSHELSLAYDQYSLKKL--------------EPPLVLQEFVNHGGVLFKVYIV--GEAIKV--VRRFSLPDVTKQDL 169 (274)
Q Consensus 108 Gs~~sh~m~iv~~~~~l~~l--------------~~p~vvQefI~h~g~~~KV~VI--G~~v~~--~~R~S~p~~~~~~~ 169 (274)
| |.++.++.+.++|++. ..++++||||+ |..|-|-++ ++++.. ..+..-...
T Consensus 158 g---s~gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~~lvEe~i~--G~E~sv~~~~~~G~~~~~~~~~~~~~~~----- 227 (416)
T PRK07206 158 G---SDGVFICPAKGDWKHAFNAILGKANKLGLVNETVLVQEYLI--GTEYVVNFVSLDGNHLVTEIVRYHKTSL----- 227 (416)
T ss_pred C---CCCEEEeCCHHHHHHHHHHHHhccccCCCCCCeEEEEEccc--cEEEEEEEEEECCEEEEEEeEEeeeccc-----
Confidence 4 5689999999987542 24799999995 777776444 556443 233211111
Q ss_pred ccCCceeeecCcccccccCCcCCCCccccCCCChHHHHHHHHHHHHHhCCc--eeEEeEEEeCCCCCeEEEEeccCCCCC
Q 024006 170 STSAGVFRFPRVSCAAASADDADLDPCVAELPPRPLLERLAKELRRQLGLR--LFNLDIIREHGTRDQFYVIDINYFPGY 247 (274)
Q Consensus 170 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lA~~~~~~lGl~--l~G~Dvi~~~~~g~~~~ViDVN~fPg~ 247 (274)
..+.+.+... .....+ .+..+++.+++.++.++||+. .+.+|++++. +| ++++|||.-||=
T Consensus 228 --~~~~~~~~~~-------~~~p~~-----~~~~~~i~~~~~~~~~alg~~~G~~h~E~~~~~-~g--~~liEin~R~~G 290 (416)
T PRK07206 228 --NSGSTVYDYD-------EFLDYS-----EPEYQELVDYTKQALDALGIKNGPAHAEVMLTA-DG--PRLIEIGARLDG 290 (416)
T ss_pred --CCCCceeccc-------ccCCcc-----HHHHHHHHHHHHHHHHHcCCccCCceEEEEEcC-CC--CEEEEECCccCC
Confidence 0111110000 000000 112457889999999999994 6779999975 34 689999999985
Q ss_pred CCccc
Q 024006 248 GKMPE 252 (274)
Q Consensus 248 ~g~~~ 252 (274)
...+.
T Consensus 291 ~~~~~ 295 (416)
T PRK07206 291 GLHPD 295 (416)
T ss_pred CCccc
Confidence 55553
No 37
>PRK05586 biotin carboxylase; Validated
Probab=99.56 E-value=1.5e-13 Score=133.22 Aligned_cols=178 Identities=12% Similarity=0.210 Sum_probs=119.3
Q ss_pred Cc-EEeCcHHHHHHhcCHHHHHHHHHhccccCCCCCccCCCEE--EEecCCCChhHHHHhcCCCCcEEEeeCcCCCCccc
Q 024006 36 EV-TVLDPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQL--VIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKS 112 (274)
Q Consensus 36 ~v-~Vidp~~ai~~l~dR~~~~~~L~~~~~~~~~~~I~~P~~~--~~~~~~~~~~~~l~~~~l~~P~VvKp~~a~Gs~~s 112 (274)
++ ++--+++++..++||..+-+.|.+. ||++|++. .+. +.+++.+.. ..++||+|+||..|+ +|
T Consensus 99 gi~~~g~s~~~~~~~~DK~~~k~~l~~~-------GIpvp~~~~~~~~-~~~e~~~~~--~~igyPvvvKP~~gg---gg 165 (447)
T PRK05586 99 NIVFIGPDSETIELMGNKSNAREIMIKA-------GVPVVPGSEGEIE-NEEEALEIA--KEIGYPVMVKASAGG---GG 165 (447)
T ss_pred CCcEECcCHHHHHhhCCHHHHHHHHHHC-------CCCCCCCcccccC-CHHHHHHHH--HHcCCCEEEEECCCC---CC
Confidence 44 4668899999999999999999886 89999874 333 222233322 358999999998854 47
Q ss_pred eeeEEEeChhhHhcc-------------CCCeEEEecccCCCeEEEEEEECCE---EEEEEEecCCCCcccccccCCcee
Q 024006 113 HELSLAYDQYSLKKL-------------EPPLVLQEFVNHGGVLFKVYIVGEA---IKVVRRFSLPDVTKQDLSTSAGVF 176 (274)
Q Consensus 113 h~m~iv~~~~~l~~l-------------~~p~vvQefI~h~g~~~KV~VIG~~---v~~~~R~S~p~~~~~~~~~~~g~~ 176 (274)
+++.++.++++|.+. +.++++||||+ +++.+.+.|+++. +.....+... +....
T Consensus 166 ~Gv~~v~~~~el~~a~~~~~~~~~~~~~~~~vivEe~i~-g~~ei~v~v~~d~~G~~~~~~~~~~~------~~~~~--- 235 (447)
T PRK05586 166 RGIRIVRSEEELIKAFNTAKSEAKAAFGDDSMYIEKFIE-NPKHIEFQILGDNYGNVVHLGERDCS------LQRRN--- 235 (447)
T ss_pred CeeEEECCHHHHHHHHHHHHHHHHHhcCCCeEEEEecCC-CCeEEEEEEEECCCCCEEEEeceecc------eEecc---
Confidence 899999999988542 35799999996 3478999888763 3322111000 00000
Q ss_pred eecCcccccccCCcCCCCccccCCCChHHHHHHHHHHHHHhCCceeE-EeEEEeCCCCCeEEEEeccCCCCCC
Q 024006 177 RFPRVSCAAASADDADLDPCVAELPPRPLLERLAKELRRQLGLRLFN-LDIIREHGTRDQFYVIDINYFPGYG 248 (274)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lA~~~~~~lGl~l~G-~Dvi~~~~~g~~~~ViDVN~fPg~~ 248 (274)
.... . .+....++++. .++++++|.++.++||+.-.+ +|++++. +| ++|++|||.-||-.
T Consensus 236 --~~~~--~-~~p~~~l~~~~-----~~~l~~~a~~i~~aLg~~g~~~vEf~~~~-~g-~~~~iEvNpR~~~~ 296 (447)
T PRK05586 236 --QKVL--E-EAPSPVMTEEL-----RKKMGEIAVKAAKAVNYKNAGTIEFLLDK-DG-NFYFMEMNTRIQVE 296 (447)
T ss_pred --cceE--E-EcCCCCCCHHH-----HHHHHHHHHHHHHHcCCcceeEEEEEEcC-CC-CEEEEEEECCCCCC
Confidence 0000 0 00000122111 356899999999999999766 9999985 45 68999999988744
No 38
>PRK09288 purT phosphoribosylglycinamide formyltransferase 2; Validated
Probab=99.54 E-value=2.6e-13 Score=128.87 Aligned_cols=179 Identities=16% Similarity=0.253 Sum_probs=120.4
Q ss_pred CcEEeCcHHHHHHhcCHHHHHHHHH-hccccCCCCCccCCCEEEEecCCCChhHHHHhcCCCCcEEEeeCcCCCCcccee
Q 024006 36 EVTVLDPPYAIQHLHNRQSMLQCVA-DMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHE 114 (274)
Q Consensus 36 ~v~Vidp~~ai~~l~dR~~~~~~L~-~~~~~~~~~~I~~P~~~~~~~~~~~~~~~l~~~~l~~P~VvKp~~a~Gs~~sh~ 114 (274)
++++..++++++.++||..+-+.|. ++ ||++|++..+++ .+++.+.. ..++||+|+||..+. +|.+
T Consensus 98 g~~~~~~~~a~~~~~dK~~~k~~l~~~~-------gip~p~~~~~~s-~~~l~~~~--~~~g~P~VvKP~~g~---~s~G 164 (395)
T PRK09288 98 GFNVVPTARATRLTMNREGIRRLAAEEL-------GLPTSPYRFADS-LEELRAAV--EEIGYPCVVKPVMSS---SGKG 164 (395)
T ss_pred CCeeCCCHHHHHHHhCHHHHHHHHHHhC-------CCCCCCceEECC-HHHHHHHH--HhcCCCEEEEeCCCc---CCCC
Confidence 6777788999999999999888884 54 899999998863 22333322 358999999998653 4678
Q ss_pred eEEEeChhhHhcc-----------CCCeEEEecccCCCeEEEEEEECCE---EEEEEEecCCCCcccccccCCceeeecC
Q 024006 115 LSLAYDQYSLKKL-----------EPPLVLQEFVNHGGVLFKVYIVGEA---IKVVRRFSLPDVTKQDLSTSAGVFRFPR 180 (274)
Q Consensus 115 m~iv~~~~~l~~l-----------~~p~vvQefI~h~g~~~KV~VIG~~---v~~~~R~S~p~~~~~~~~~~~g~~~~~~ 180 (274)
+.++.++++|.+. ..++++||||+ .|.++.|.++.+. .... ....+. . ..|.+..
T Consensus 165 v~~v~~~~el~~~~~~~~~~~~~~~~~~lvEefi~-~~~E~sv~~~~~~~~~~~~~--~~~~~~-----~-~~~~~~~-- 233 (395)
T PRK09288 165 QSVVRSPEDIEKAWEYAQEGGRGGAGRVIVEEFID-FDYEITLLTVRAVDGGTHFC--APIGHR-----Q-EDGDYRE-- 233 (395)
T ss_pred eEEECCHHHHHHHHHHHHhhccccCCCEEEEEecC-CCEEEEEEEEEcCCCCEEEe--cCcccE-----E-ECCEEEE--
Confidence 9999999888542 25899999996 4788888877432 2111 001111 0 0111110
Q ss_pred cccccccCCcCCCCccccCCCChHHHHHHHHHHHHHhCCc-eeEEeEEEeCCCCCeEEEEeccCCCCCCCccc
Q 024006 181 VSCAAASADDADLDPCVAELPPRPLLERLAKELRRQLGLR-LFNLDIIREHGTRDQFYVIDINYFPGYGKMPE 252 (274)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lA~~~~~~lGl~-l~G~Dvi~~~~~g~~~~ViDVN~fPg~~g~~~ 252 (274)
+ ..+..++++. .++++++|.++.++||.. ++.+|++++++ ++||+|+|.-||-.+...
T Consensus 234 -~-----~~p~~l~~~~-----~~~i~~~~~~~~~~L~~~G~~~ve~~~~~~---~~~viEinpR~~~~~~~~ 292 (395)
T PRK09288 234 -S-----WQPQPMSPAA-----LEEAQEIAKKVTDALGGRGLFGVELFVKGD---EVYFSEVSPRPHDTGMVT 292 (395)
T ss_pred -E-----ECCCCCCHHH-----HHHHHHHHHHHHHHcCCeeEEEEEEEEeCC---eEEEEEecCCCCCCccee
Confidence 0 0011222211 356789999999999965 55699999752 489999999999665543
No 39
>PRK06524 biotin carboxylase-like protein; Validated
Probab=99.54 E-value=4e-13 Score=130.61 Aligned_cols=193 Identities=14% Similarity=0.145 Sum_probs=124.0
Q ss_pred HHHHHHHHhCCCcEE-eCcHHHHHHhcCHHHHHHHHHhccccCCCCCccCCCEEEEec-CCCChhHHHHhcCCCCcEEEe
Q 024006 25 QILEEYRQTHPEVTV-LDPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIER-DASSIPDVVLKAGLTLPLVAK 102 (274)
Q Consensus 25 ~~l~~y~~~~P~v~V-idp~~ai~~l~dR~~~~~~L~~~~~~~~~~~I~~P~~~~~~~-~~~~~~~~l~~~~l~~P~VvK 102 (274)
..+|...+.. ++++ .=+.+++..++||..+-+.++++ ||++|++..... +.+++.......+++||+|+|
T Consensus 116 G~iQ~lLE~l-GIpy~gP~a~asai~mDK~~tK~l~~~a-------GIPtpp~~~~~~~~~eel~~~~~~~~IGyPvVVK 187 (493)
T PRK06524 116 EETEALARQA-GLEVMHPPAELRHRLDSKIVTTRLANEA-------GVPSVPHVLGRVDSYDELSALAHGAGLGDDLVVQ 187 (493)
T ss_pred HHHHHHHHHC-CCeEECcCHHHHHHhCCHHHHHHHHHHc-------CCCCCCcccccCCCHHHHHHHHHhccCCCcEEEE
Confidence 3566666653 4666 77788999999999999999875 899999987531 211222222223599999999
Q ss_pred eCcCCCCccceeeEEEeChhhHhcc-----C-CCeEEEecccCCCeEEEE--EEECCE-EEEE-EEecCCCCccccccc-
Q 024006 103 PLVADGSAKSHELSLAYDQYSLKKL-----E-PPLVLQEFVNHGGVLFKV--YIVGEA-IKVV-RRFSLPDVTKQDLST- 171 (274)
Q Consensus 103 p~~a~Gs~~sh~m~iv~~~~~l~~l-----~-~p~vvQefI~h~g~~~KV--~VIG~~-v~~~-~R~S~p~~~~~~~~~- 171 (274)
|..| || |+++.++.++++|..+ . ..+++|+||+ |+.+-| ++-++. +.+. .+..++-. ++..
T Consensus 188 P~~G-GS--S~GV~~Vkn~eELe~a~~~~~~~~~viVEe~I~--GrEitVev~vd~dG~Vv~~~~~e~vg~~---Ei~~y 259 (493)
T PRK06524 188 TPYG-DS--GSTTFFVRGQRDWDKYAGGIVGQPEIKVMKRIR--NVEVCIEACVTRHGTVIGPAMTSLVGYP---ELTPY 259 (493)
T ss_pred ECCC-CC--CcCEEEeCCHHHHHHHHHHhcCCCCEEEEeccC--cEEEEEEEEEeCCCCEEeccccccccce---EEEEc
Confidence 9963 34 8999999999998753 2 4589999995 787766 544432 3221 11111100 1100
Q ss_pred CCceeeecCcccccccCCcCCCCccccCCCChHHHHHHHHHHHHHh---CCc-eeEEeEEEeCCCCCeEEEEeccCCCCC
Q 024006 172 SAGVFRFPRVSCAAASADDADLDPCVAELPPRPLLERLAKELRRQL---GLR-LFNLDIIREHGTRDQFYVIDINYFPGY 247 (274)
Q Consensus 172 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lA~~~~~~l---Gl~-l~G~Dvi~~~~~g~~~~ViDVN~fPg~ 247 (274)
..|++.. ...++.++++. .++++++|.++.++| |+. ++++|++++.++| ++|++|||.=||=
T Consensus 260 r~G~~~~--------~i~PA~L~~ei-----~eeIqeiA~ka~~aL~~lG~~Gv~rVDFfvd~ddg-evYfnEINPR~~G 325 (493)
T PRK06524 260 RGGWCGN--------DIWPGALPPAQ-----TRKAREMVRKLGDVLSREGYRGYFEVDLLHDLDAD-ELYLGEVNPRLSG 325 (493)
T ss_pred cCCeEEE--------EEccCCCCHHH-----HHHHHHHHHHHHHHhhcCCCEEEEEEEEEEECCCC-eEEEEEEeCCccc
Confidence 1111110 00112333322 457899999999999 555 6679999985344 6999999998874
No 40
>PRK12833 acetyl-CoA carboxylase biotin carboxylase subunit; Provisional
Probab=99.53 E-value=2.9e-13 Score=132.04 Aligned_cols=177 Identities=20% Similarity=0.266 Sum_probs=120.5
Q ss_pred Cc-EEeCcHHHHHHhcCHHHHHHHHHhccccCCCCCccCCCEE--EEecCCCChhHHHHhcCCCCcEEEeeCcCCCCccc
Q 024006 36 EV-TVLDPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQL--VIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKS 112 (274)
Q Consensus 36 ~v-~Vidp~~ai~~l~dR~~~~~~L~~~~~~~~~~~I~~P~~~--~~~~~~~~~~~~l~~~~l~~P~VvKp~~a~Gs~~s 112 (274)
++ ++-.++++++.+.||..+-+.+.++ ||++|++. .+. +.++..+.. ..++||+|+||..|+ +|
T Consensus 102 gi~~igps~~ai~~~~DK~~~r~~l~~~-------GIp~~p~~~~~v~-~~~e~~~~~--~~igyPvvvKp~~gg---gg 168 (467)
T PRK12833 102 GLIFVGPDAQTIRTMGDKARARRTARRA-------GVPTVPGSDGVVA-SLDAALEVA--ARIGYPLMIKAAAGG---GG 168 (467)
T ss_pred CCCccCCCHHHHHHhcCHHHHHHHHHHc-------CCCCCCCcCcCcC-CHHHHHHHH--HHhCCCEEEEECCCC---CC
Confidence 44 3556789999999999999999986 89998775 443 222233322 358999999998864 46
Q ss_pred eeeEEEeChhhHhcc-------------CCCeEEEecccCCCeEEEEEEECCE--EEEE-EEe-cCCCCcccccccCCce
Q 024006 113 HELSLAYDQYSLKKL-------------EPPLVLQEFVNHGGVLFKVYIVGEA--IKVV-RRF-SLPDVTKQDLSTSAGV 175 (274)
Q Consensus 113 h~m~iv~~~~~l~~l-------------~~p~vvQefI~h~g~~~KV~VIG~~--v~~~-~R~-S~p~~~~~~~~~~~g~ 175 (274)
.+|.++.++++|.+. +.++++|+||+. |+.+-|-|+||. ++.. .|. +... .....
T Consensus 169 ~Gv~~v~~~~eL~~a~~~~~~~~~~~~~~~~vlvEefi~~-~~ei~v~v~~dg~~~~~~~~~~~~~~r-------~~~ki 240 (467)
T PRK12833 169 RGIRVAHDAAQLAAELPLAQREAQAAFGDGGVYLERFIAR-ARHIEVQILGDGERVVHLFERECSLQR-------RRQKI 240 (467)
T ss_pred CeEEEECCHHHHHHHHHHHHHHHHHhcCCCcEEEEecCCC-CEEEEEEEEeCCCcEEEEEEeeccccc-------CCccE
Confidence 799999999988641 457999999974 799999999874 3332 232 1100 00000
Q ss_pred eeecCcccccccCCcCCCCccccCCCChHHHHHHHHHHHHHhCCceeE-EeEEEeCCCCCeEEEEeccCCCCCC
Q 024006 176 FRFPRVSCAAASADDADLDPCVAELPPRPLLERLAKELRRQLGLRLFN-LDIIREHGTRDQFYVIDINYFPGYG 248 (274)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lA~~~~~~lGl~l~G-~Dvi~~~~~g~~~~ViDVN~fPg~~ 248 (274)
+. . +....++++. .+++.++|.++.++||+.-.+ +|++++.++| ++|++|||.-++-.
T Consensus 241 ~e--~-------~p~~~l~~~~-----~~~l~~~a~~~~~alg~~G~~~vEf~~~~~~g-~~~~iEvNpR~~~~ 299 (467)
T PRK12833 241 LE--E-------APSPSLTPAQ-----RDALCASAVRLARQVGYRGAGTLEYLFDDARG-EFYFIEMNTRIQVE 299 (467)
T ss_pred EE--E-------CCCCCCCHHH-----HHHHHHHHHHHHHHcCCcCcceEEEEEecCCC-CEEEEEEECCCCcc
Confidence 00 0 0001122211 357899999999999999554 9999985445 68999999988743
No 41
>PRK08462 biotin carboxylase; Validated
Probab=99.51 E-value=8e-13 Score=127.85 Aligned_cols=184 Identities=15% Similarity=0.233 Sum_probs=121.2
Q ss_pred HHHHHHhCCCcE-EeCcHHHHHHhcCHHHHHHHHHhccccCCCCCccCCCEE--EEecCCCChhHHHHhcCCCCcEEEee
Q 024006 27 LEEYRQTHPEVT-VLDPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQL--VIERDASSIPDVVLKAGLTLPLVAKP 103 (274)
Q Consensus 27 l~~y~~~~P~v~-Vidp~~ai~~l~dR~~~~~~L~~~~~~~~~~~I~~P~~~--~~~~~~~~~~~~l~~~~l~~P~VvKp 103 (274)
+++..+.+ +++ +-.++++++.+.||..|.+.|.+. ||++|++. .++ +.++..+.. ..++||+|+||
T Consensus 93 ~a~~~e~~-Gi~~~g~~~~~~~~~~dK~~~r~~l~~~-------gIp~pp~~~~~~~-~~~~~~~~~--~~~g~PvvvKP 161 (445)
T PRK08462 93 FVEICSHH-NIKFIGPSVEVMALMSDKSKAKEVMKRA-------GVPVIPGSDGALK-SYEEAKKIA--KEIGYPVILKA 161 (445)
T ss_pred HHHHHHHC-CCeEECcCHHHHHHhCCHHHHHHHHHHC-------CCCCCCCcccccC-CHHHHHHHH--HHcCCCEEEEe
Confidence 34444443 565 458889999999999999999986 89998864 232 222233322 35899999999
Q ss_pred CcCCCCccceeeEEEeChhhHhcc-------------CCCeEEEecccCCCeEEEEEEECCE---EEEE-EEe-cCCCCc
Q 024006 104 LVADGSAKSHELSLAYDQYSLKKL-------------EPPLVLQEFVNHGGVLFKVYIVGEA---IKVV-RRF-SLPDVT 165 (274)
Q Consensus 104 ~~a~Gs~~sh~m~iv~~~~~l~~l-------------~~p~vvQefI~h~g~~~KV~VIG~~---v~~~-~R~-S~p~~~ 165 (274)
..|+ +|.+|.++.++++|.+. +.++++||||+ +++.+.+.++|+. ++.. .|. +...
T Consensus 162 ~~g~---gs~Gv~~v~~~~eL~~~~~~~~~~~~~~~~~~~vlvEe~i~-g~~e~~v~v~~~~~g~~~~~g~~~~~~~~-- 235 (445)
T PRK08462 162 AAGG---GGRGMRVVEDESDLENLYLAAESEALSAFGDGTMYMEKFIN-NPRHIEVQILGDKHGNVIHVGERDCSLQR-- 235 (445)
T ss_pred CCCC---CCCCeEEECCHHHHHHHHHHHHHHHHhccCCCcEEEeccCC-CCeEEEEEEEECCCCCEEEEEecccccee--
Confidence 9864 46799999999988642 34699999996 3677899888653 2222 111 1100
Q ss_pred ccccccCCceeeecCcccccccCCcCCCCccccCCCChHHHHHHHHHHHHHhCCceeE-EeEEEeCCCCCeEEEEeccCC
Q 024006 166 KQDLSTSAGVFRFPRVSCAAASADDADLDPCVAELPPRPLLERLAKELRRQLGLRLFN-LDIIREHGTRDQFYVIDINYF 244 (274)
Q Consensus 166 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lA~~~~~~lGl~l~G-~Dvi~~~~~g~~~~ViDVN~f 244 (274)
....+ ... .....++++. .+++.++|.++.++||+.-++ +|++++.+ | ++||+|||.-
T Consensus 236 ------~~~~~----~~~----~p~~~l~~~~-----~~~i~~~a~~~~~alg~~G~~~ve~~~~~~-g-~~~viEiNpR 294 (445)
T PRK08462 236 ------RHQKL----IEE----SPAVVLDEKT-----RERLHETAIKAAKAIGYEGAGTFEFLLDSN-L-DFYFMEMNTR 294 (445)
T ss_pred ------cccce----EEE----cCCCCCCHHH-----HHHHHHHHHHHHHHcCCCCcceEEEEEeCC-C-CEEEEEEECC
Confidence 00000 000 0000122211 357899999999999998555 99999853 3 5899999998
Q ss_pred CCCC
Q 024006 245 PGYG 248 (274)
Q Consensus 245 Pg~~ 248 (274)
+|-.
T Consensus 295 ~~~~ 298 (445)
T PRK08462 295 LQVE 298 (445)
T ss_pred cCcC
Confidence 8743
No 42
>TIGR01369 CPSaseII_lrg carbamoyl-phosphate synthase, large subunit. In several thermophilic species (Methanobacterium thermoautotrophicum, Methanococcus jannaschii, Aquifex aeolicus), the large subunit appears split, at different points, into two separate genes.
Probab=99.51 E-value=8.4e-13 Score=139.86 Aligned_cols=174 Identities=15% Similarity=0.351 Sum_probs=119.2
Q ss_pred CcEEe-CcHHHHHHhcCHHHHHHHHHhccccCCCCCccCCCEEEEecCCCChhHHHHhcCCCCcEEEeeCcCCCCcccee
Q 024006 36 EVTVL-DPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHE 114 (274)
Q Consensus 36 ~v~Vi-dp~~ai~~l~dR~~~~~~L~~~~~~~~~~~I~~P~~~~~~~~~~~~~~~l~~~~l~~P~VvKp~~a~Gs~~sh~ 114 (274)
+++++ ++++++..+.||..+.+.|.++ ||++|++..+. +.+++.+.. ..++||+|+||..+. ++.+
T Consensus 653 Gi~i~G~s~~~i~~~~DK~~f~~lL~~~-------GIp~P~~~~v~-s~ee~~~~~--~~igyPvIVKP~~~~---Gg~g 719 (1050)
T TIGR01369 653 GVPILGTSPESIDRAEDREKFSELLDEL-------GIPQPKWKTAT-SVEEAVEFA--SEIGYPVLVRPSYVL---GGRA 719 (1050)
T ss_pred CCcEECCCHHHHHHHCCHHHHHHHHHHC-------CcCCCCeEEEC-CHHHHHHHH--HhcCCCEEEEECCCC---CCCC
Confidence 56665 7899999999999999999986 89999999885 333333322 357999999998864 4578
Q ss_pred eEEEeChhhHhcc---------CCCeEEEecccCCCeEEEE--EEECCEEEEE--EEecC-CCCcccccccCCceeeecC
Q 024006 115 LSLAYDQYSLKKL---------EPPLVLQEFVNHGGVLFKV--YIVGEAIKVV--RRFSL-PDVTKQDLSTSAGVFRFPR 180 (274)
Q Consensus 115 m~iv~~~~~l~~l---------~~p~vvQefI~h~g~~~KV--~VIG~~v~~~--~R~S~-p~~~~~~~~~~~g~~~~~~ 180 (274)
|.++.++++|... +.|+++||||+ +|..+-| ++-|+++.+. ++.-. .+...+ +....++
T Consensus 720 v~iv~~~eeL~~~l~~a~~~s~~~~vlVeefI~-~G~E~~Vd~l~d~g~v~i~~i~e~~~~~gv~sG-----ds~~~~P- 792 (1050)
T TIGR01369 720 MEIVYNEEELRRYLEEAVEVSPEHPVLIDKYLE-DAVEVDVDAVSDGEEVLIPGIMEHIEEAGVHSG-----DSTCVLP- 792 (1050)
T ss_pred eEEECCHHHHHHHHHHHHHhCCCCCEEEeecCC-CCeEEEEEEEEeCCEEEEEEEEEeecccCCcCC-----CceEEec-
Confidence 9999999998652 46899999996 3666655 4556666542 22211 000000 0000000
Q ss_pred cccccccCCcCCCCccccCCCChHHHHHHHHHHHHHhCCc-eeEEeEEEeCCCCCeEEEEeccCCCC
Q 024006 181 VSCAAASADDADLDPCVAELPPRPLLERLAKELRRQLGLR-LFNLDIIREHGTRDQFYVIDINYFPG 246 (274)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lA~~~~~~lGl~-l~G~Dvi~~~~~g~~~~ViDVN~fPg 246 (274)
...++++. .+++++++.++.++||+. ++++|+++++ + ++||||||.-++
T Consensus 793 ---------~~~l~~~~-----~~~i~~~a~ki~~aLgi~G~~~vqf~~~~--~-~~yvIEvNpR~s 842 (1050)
T TIGR01369 793 ---------PQTLSAEI-----VDRIKDIVRKIAKELNVKGLMNIQFAVKD--G-EVYVIEVNPRAS 842 (1050)
T ss_pred ---------CCCCCHHH-----HHHHHHHHHHHHHHCCCcceEEEEEEEEC--C-eEEEEEEeCCCC
Confidence 00111111 357899999999999987 5569999974 3 589999999886
No 43
>PRK05294 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=99.50 E-value=1.7e-12 Score=137.89 Aligned_cols=183 Identities=17% Similarity=0.309 Sum_probs=119.8
Q ss_pred HHHHHHHhCCCcEEe-CcHHHHHHhcCHHHHHHHHHhccccCCCCCccCCCEEEEecCCCChhHHHHhcCCCCcEEEeeC
Q 024006 26 ILEEYRQTHPEVTVL-DPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPL 104 (274)
Q Consensus 26 ~l~~y~~~~P~v~Vi-dp~~ai~~l~dR~~~~~~L~~~~~~~~~~~I~~P~~~~~~~~~~~~~~~l~~~~l~~P~VvKp~ 104 (274)
.+.+.+++ -+++++ .+++++..+.||..+.+.|.++ ||++|++..+.+ .++..+.. ..++||+|+||.
T Consensus 644 ~la~~le~-~Gi~ilg~s~~ai~~~~DK~~~~~~L~~~-------GIp~P~~~~~~s-~ee~~~~~--~~igyPvvVKP~ 712 (1066)
T PRK05294 644 KLAKALEA-AGVPILGTSPDAIDLAEDRERFSKLLEKL-------GIPQPPNGTATS-VEEALEVA--EEIGYPVLVRPS 712 (1066)
T ss_pred HHHHHHHH-CCCceeCCCHHHHHHhCCHHHHHHHHHHc-------CcCCCCeEEECC-HHHHHHHH--HhcCCCeEEEeC
Confidence 33344444 266665 6789999999999999999986 899999998853 22333322 357899999998
Q ss_pred cCCCCccceeeEEEeChhhHhcc---------CCCeEEEecccCCCeEEEEEEE--CCEEEE--EEEecCC-CCcccccc
Q 024006 105 VADGSAKSHELSLAYDQYSLKKL---------EPPLVLQEFVNHGGVLFKVYIV--GEAIKV--VRRFSLP-DVTKQDLS 170 (274)
Q Consensus 105 ~a~Gs~~sh~m~iv~~~~~l~~l---------~~p~vvQefI~h~g~~~KV~VI--G~~v~~--~~R~S~p-~~~~~~~~ 170 (274)
.+. +|.+|.++.++++|..+ +.|+++||||+.. +.+-|-++ |+.+.. .++.-.+ ....++
T Consensus 713 ~~~---Gg~Gv~iv~~~eeL~~~~~~a~~~s~~~~vlIEefI~G~-~E~sV~~v~dg~~v~i~~i~e~i~~~gv~~Gd-- 786 (1066)
T PRK05294 713 YVL---GGRAMEIVYDEEELERYMREAVKVSPDHPVLIDKFLEGA-IEVDVDAICDGEDVLIGGIMEHIEEAGVHSGD-- 786 (1066)
T ss_pred CCC---CCCcEEEECCHHHHHHHHHHHHhhCCCCcEEEEecCCCC-EEEEEEEEecCCeEEEeeeEEeeeeccccCCC--
Confidence 753 56799999999988642 4689999999633 15544444 443332 1221111 000000
Q ss_pred cCCceeeecCcccccccCCcCCCCccccCCCChHHHHHHHHHHHHHhCCc-eeEEeEEEeCCCCCeEEEEeccCCCC
Q 024006 171 TSAGVFRFPRVSCAAASADDADLDPCVAELPPRPLLERLAKELRRQLGLR-LFNLDIIREHGTRDQFYVIDINYFPG 246 (274)
Q Consensus 171 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lA~~~~~~lGl~-l~G~Dvi~~~~~g~~~~ViDVN~fPg 246 (274)
....+ ....++++ ..++++++|.++.++||+. ++++|+++++ + ++||+|||.-|+
T Consensus 787 ---s~~~~----------p~~~l~~~-----~~~~i~~~a~~i~~aLg~~G~~~vqf~~~~--~-~~yViEiNpR~s 842 (1066)
T PRK05294 787 ---SACSL----------PPQTLSEE-----IIEEIREYTKKLALELNVVGLMNVQFAVKD--D-EVYVIEVNPRAS 842 (1066)
T ss_pred ---CcEEe----------cCCCCCHH-----HHHHHHHHHHHHHHHcCCeeeEEEEEEEEC--C-eEEEEEEecCCC
Confidence 00000 00112211 1357899999999999996 6669999974 3 589999999876
No 44
>PRK13790 phosphoribosylamine--glycine ligase; Provisional
Probab=99.50 E-value=3e-12 Score=121.83 Aligned_cols=193 Identities=15% Similarity=0.147 Sum_probs=118.3
Q ss_pred HHHHHHHHHHhCCCcEEe-CcHHHHHHhcCHHHHHHHHHhccccCCCCCccCCCEEEEecCCCChhHHHHhcCCCCcEEE
Q 024006 23 WRQILEEYRQTHPEVTVL-DPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVA 101 (274)
Q Consensus 23 ~~~~l~~y~~~~P~v~Vi-dp~~ai~~l~dR~~~~~~L~~~~~~~~~~~I~~P~~~~~~~~~~~~~~~l~~~~l~~P~Vv 101 (274)
....+.++.+. -+++++ .+.++++.+.||..+-+.|+++ ||++|++..+. +.++..+.+ ..++||+|+
T Consensus 39 l~~~~~d~l~~-~Gi~~~g~s~~a~~l~~dK~~~k~~l~~~-------gIptp~~~~~~-~~~ea~~~~--~~~g~PvVv 107 (379)
T PRK13790 39 LIDGLADILRA-NGFKVFGPNKQAAQIEGSKLFAKKIMEKY-------NIPTADYKEVE-RKKDALTYI--ENCELPVVV 107 (379)
T ss_pred HHHHHHHHHHh-CCCcEECCCHHHHHHhCCHHHHHHHHHHC-------CCCCCCEEEEC-CHHHHHHHH--HhcCCCEEE
Confidence 34455666655 357666 5559999999999999999986 89999998875 322333333 357899999
Q ss_pred eeCcCCCCccceeeEEEeChhhHhcc---------CCCeEEEecccCCCeEEEEEEE--CCEEEEEEEecCCCCcccccc
Q 024006 102 KPLVADGSAKSHELSLAYDQYSLKKL---------EPPLVLQEFVNHGGVLFKVYIV--GEAIKVVRRFSLPDVTKQDLS 170 (274)
Q Consensus 102 Kp~~a~Gs~~sh~m~iv~~~~~l~~l---------~~p~vvQefI~h~g~~~KV~VI--G~~v~~~~R~S~p~~~~~~~~ 170 (274)
||..++ +|.++.++.+.+++.+. ..++++||||. |..+-|.++ |+.++. ++.+.. +
T Consensus 108 Kp~~~~---~gkGV~iv~~~~el~~a~~~~~~~~~~~~vlvEe~i~--G~E~sv~~~~~g~~~~~-----~~~~~~-~-- 174 (379)
T PRK13790 108 KKDGLA---AGKGVIIADTIEAARSAIEIMYGDEEEGTVVFETFLE--GEEFSLMTFVNGDLAVP-----FDCIAQ-D-- 174 (379)
T ss_pred EeCCCC---CCCCEEEECCHHHHHHHHHHHHhcCCCCeEEEEEccc--CceEEEEEEeeCCEEEe-----cccccc-c--
Confidence 998642 47899999999887531 34799999995 677776655 443321 100000 0
Q ss_pred cCCceeeecCccc-ccc--cCCcCCCCccccCCCChHHHHHHHHHHHHHh---CCceeE---EeEEEeCCCCCeEEEEec
Q 024006 171 TSAGVFRFPRVSC-AAA--SADDADLDPCVAELPPRPLLERLAKELRRQL---GLRLFN---LDIIREHGTRDQFYVIDI 241 (274)
Q Consensus 171 ~~~g~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~lA~~~~~~l---Gl~l~G---~Dvi~~~~~g~~~~ViDV 241 (274)
....|+...... ++. ......++++. .++..++++.++.++| |+.+.| +|++++. +| ++|+|+
T Consensus 175 -~kr~~~~d~g~~tgg~~~~~p~~~l~~~~----~~~~~~~i~~~~~~aL~~~g~~~~Gvl~~e~~lt~-~g--~~viEi 246 (379)
T PRK13790 175 -HKRAFDHDEGPNTGGMGAYCPVPHISDDV----LKLTNETIAQPIAKAMLNEGYQFFGVLYIGAILTK-DG--PKVIEF 246 (379)
T ss_pred -ccccccCCCCCcCCCCceEeeCCCCCHHH----HHHHHHHHHHHHHHHHHHcCCCceeEEEEEEEEeC-CC--eEEEEE
Confidence 000111110000 010 00000111111 0112378888888888 667677 5999974 34 899999
Q ss_pred cCCCCC
Q 024006 242 NYFPGY 247 (274)
Q Consensus 242 N~fPg~ 247 (274)
|.-||-
T Consensus 247 N~R~G~ 252 (379)
T PRK13790 247 NARFGD 252 (379)
T ss_pred EcccCC
Confidence 998874
No 45
>PRK08654 pyruvate carboxylase subunit A; Validated
Probab=99.48 E-value=1.5e-12 Score=128.04 Aligned_cols=183 Identities=10% Similarity=0.172 Sum_probs=122.7
Q ss_pred HHHHHhCCCcEEe-CcHHHHHHhcCHHHHHHHHHhccccCCCCCccCCCEEEE-ecCCCChhHHHHhcCCCCcEEEeeCc
Q 024006 28 EEYRQTHPEVTVL-DPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVI-ERDASSIPDVVLKAGLTLPLVAKPLV 105 (274)
Q Consensus 28 ~~y~~~~P~v~Vi-dp~~ai~~l~dR~~~~~~L~~~~~~~~~~~I~~P~~~~~-~~~~~~~~~~l~~~~l~~P~VvKp~~ 105 (274)
.+..+.. +++++ .++++++.+.||..+-+.+.+. |||+|++... -.+.++..+.. ..++||+|+||..
T Consensus 92 a~~~e~~-gi~~iGps~~~i~~~~DK~~~k~~l~~~-------GVpv~p~~~~~v~~~~e~~~~a--~~igyPvvIKp~~ 161 (499)
T PRK08654 92 AKACEKA-GIVFIGPSSDVIEAMGSKINAKKLMKKA-------GVPVLPGTEEGIEDIEEAKEIA--EEIGYPVIIKASA 161 (499)
T ss_pred HHHHHHC-CCcEECCCHHHHHHhCCHHHHHHHHHHc-------CcCCCCCcCcCCCCHHHHHHHH--HHhCCCEEEEeCC
Confidence 3344432 56655 5689999999999999999986 8999877643 11222333322 3579999999988
Q ss_pred CCCCccceeeEEEeChhhHhcc-------------CCCeEEEecccCCCeEEEEEEECCE---EEE-EEEe-cCCCCccc
Q 024006 106 ADGSAKSHELSLAYDQYSLKKL-------------EPPLVLQEFVNHGGVLFKVYIVGEA---IKV-VRRF-SLPDVTKQ 167 (274)
Q Consensus 106 a~Gs~~sh~m~iv~~~~~l~~l-------------~~p~vvQefI~h~g~~~KV~VIG~~---v~~-~~R~-S~p~~~~~ 167 (274)
|+ +|.+|.++.++++|.+. +.++++|+||+ +++.+.|-|+||. ++. ..|. |...
T Consensus 162 Gg---GG~Gv~iv~~~~eL~~a~~~~~~~a~~~f~~~~v~vE~~I~-~~r~ieVqvl~d~~G~vv~l~~recsiqr---- 233 (499)
T PRK08654 162 GG---GGIGMRVVYSEEELEDAIESTQSIAQSAFGDSTVFIEKYLE-KPRHIEIQILADKHGNVIHLGDRECSIQR---- 233 (499)
T ss_pred CC---CCCeEEEeCCHHHHHHHHHHHHHHHHHhCCCCeEEEEeCCC-CCcEEEEEEEEcCCCCEEEEeeecccccc----
Confidence 64 46799999999988542 35799999997 4678999888764 332 2332 2110
Q ss_pred ccccCCceeeecCcccccccCCcCCCCccccCCCChHHHHHHHHHHHHHhCCceeE-EeEEEeCCCCCeEEEEeccCCCC
Q 024006 168 DLSTSAGVFRFPRVSCAAASADDADLDPCVAELPPRPLLERLAKELRRQLGLRLFN-LDIIREHGTRDQFYVIDINYFPG 246 (274)
Q Consensus 168 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lA~~~~~~lGl~l~G-~Dvi~~~~~g~~~~ViDVN~fPg 246 (274)
. +... -..+....++++. .++++++|.++.+++|+.-+| ||++.++ | ++|++|||.-++
T Consensus 234 ----r------~qk~--ie~~Pa~~l~~~~-----~~~l~~~A~~l~~algy~g~gtVEfl~~~--g-~~yflEiNpRlq 293 (499)
T PRK08654 234 ----R------HQKL--IEEAPSPIMTPEL-----RERMGEAAVKAAKAINYENAGTVEFLYSN--G-NFYFLEMNTRLQ 293 (499)
T ss_pred ----C------ccce--EEECCCCCCCHHH-----HHHHHHHHHHHHHHcCCCCceEEEEEEEC--C-cEEEEEEECCCC
Confidence 0 0000 0000000122222 457899999999999999877 9999963 4 599999999887
Q ss_pred CC
Q 024006 247 YG 248 (274)
Q Consensus 247 ~~ 248 (274)
..
T Consensus 294 ve 295 (499)
T PRK08654 294 VE 295 (499)
T ss_pred CC
Confidence 54
No 46
>PF02655 ATP-grasp_3: ATP-grasp domain; InterPro: IPR003806 The ATP-grasp fold is one of several distinct ATP-binding folds, and is found in enzymes that catalyze the formation of amide bonds, catalyzing the ATP-dependent ligation of a carboxylate-containing molecule to an amino or thiol group-containing molecule []. This fold is found in many different enzyme families, including various peptide synthetases, biotin carboxylase, synapsin, succinyl-CoA synthetase, pyruvate phosphate dikinase, and glutathione synthetase, amongst others []. These enzymes contribute predominantly to macromolecular synthesis, using ATP-hydrolysis to activate their substrates. The ATP-grasp fold shares functional and structural similarities with the PIPK (phosphatidylinositol phosphate kinase) and protein kinase superfamilies. The ATP-grasp domain consists of two subdomains with different alpha+beta folds, which grasp the ATP molecule between them. Each subdomain provides a variable loop that forms part of the active site, with regions from other domains also contributing to the active site, even though these other domains are not conserved between the various ATP-grasp enzymes []. This entry describes a type of ATP-grasp fold that is found in a set of proteins of unknown function.; GO: 0005524 ATP binding, 0046872 metal ion binding; PDB: 3DF7_A.
Probab=99.47 E-value=2.5e-13 Score=114.38 Aligned_cols=152 Identities=22% Similarity=0.337 Sum_probs=78.6
Q ss_pred hcCHHHHHHHHHhccccCCCCCccCCCEEEEecCCCChhHHHHhcCCCCcEEEeeCcCCCCccceeeEEEeChhhHhcc-
Q 024006 49 LHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKKL- 127 (274)
Q Consensus 49 l~dR~~~~~~L~~~~~~~~~~~I~~P~~~~~~~~~~~~~~~l~~~~l~~P~VvKp~~a~Gs~~sh~m~iv~~~~~l~~l- 127 (274)
|.||+++++.|.++ +|++|.+...... ....+|+|+||..|+ ++.++.++.+.+++...
T Consensus 1 ~~dK~~~~~~L~~~-------gi~~P~~~~~~~~----------~~~~~~~viKp~~G~---Gg~~i~~~~~~~~~~~~~ 60 (161)
T PF02655_consen 1 CSDKLKTYKFLKEL-------GIPVPTTLRDSEP----------EPIDGPWVIKPRDGA---GGEGIRIVDSEDELEEFL 60 (161)
T ss_dssp -TSHHHHHHHHTTT--------S--------EES----------S--SSSEEEEESS----------B--SS--TTE---
T ss_pred CCCHHHHHHHHHcc-------CCCCCCccccccc----------cccCCcEEEEeCCCC---CCCCeEEECCchhhcccc
Confidence 57999999999986 8999954444211 123779999999976 45688899999887753
Q ss_pred CCCeEEEecccCCCeEEEEEEECCE----EEEEEEecCCCCcccccccCCceeeecCcccccccCCcCCCCccccCCCCh
Q 024006 128 EPPLVLQEFVNHGGVLFKVYIVGEA----IKVVRRFSLPDVTKQDLSTSAGVFRFPRVSCAAASADDADLDPCVAELPPR 203 (274)
Q Consensus 128 ~~p~vvQefI~h~g~~~KV~VIG~~----v~~~~R~S~p~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (274)
..-.++|||| .|..+.+.++.+. +.++-|..+.. ..+.|.|. ++ .. ... .+..
T Consensus 61 ~~~~i~Qe~i--~G~~~Sv~~l~~~~~~~~l~~~rq~i~~--------~~~~~~~~----G~-~~---~~~-----~~~~ 117 (161)
T PF02655_consen 61 NKLRIVQEFI--EGEPYSVSFLASGGGARLLGVNRQLIGN--------DDGRFRYC----GG-IV---PAD-----TPLK 117 (161)
T ss_dssp ----EEEE-----SEEEEEEEEE-SSSEEEEEEEEEEEET------------TEEE----EE-EE---S---------HH
T ss_pred ccceEEeeee--CCEEeEEEEEEeCCceEEEEechHhhcc--------ccceeeec----cc-cc---ccC-----CchH
Confidence 3334999999 5999999888543 33344443311 00001111 11 00 110 1125
Q ss_pred HHHHHHHHHHHHHh-CCc-eeEEeEEEeCCCCCeEEEEeccCCCC
Q 024006 204 PLLERLAKELRRQL-GLR-LFNLDIIREHGTRDQFYVIDINYFPG 246 (274)
Q Consensus 204 ~~~~~lA~~~~~~l-Gl~-l~G~Dvi~~~~~g~~~~ViDVN~fPg 246 (274)
++++++|.+++++| ||. ++|||+|.++ + ++||||||.=|+
T Consensus 118 ~~~~~~~~~i~~~l~gl~G~~giD~I~~~--~-~~~viEINPR~t 159 (161)
T PF02655_consen 118 EEIIELARRIAEALPGLRGYVGIDFILDD--G-GPYVIEINPRFT 159 (161)
T ss_dssp HHHHHHHHHHHTTSTT--EEEEEEEEESS----SEEEEEEESS--
T ss_pred HHHHHHHHHHHHHcCCCeeeEeEEEEEeC--C-cEEEEEEcCCCC
Confidence 67999999999999 998 8899999975 3 589999997553
No 47
>PRK08591 acetyl-CoA carboxylase biotin carboxylase subunit; Validated
Probab=99.47 E-value=2e-12 Score=125.09 Aligned_cols=185 Identities=12% Similarity=0.175 Sum_probs=119.4
Q ss_pred HHHHHhCCCcEE-eCcHHHHHHhcCHHHHHHHHHhccccCCCCCccCCCEE--EEecCCCChhHHHHhcCCCCcEEEeeC
Q 024006 28 EEYRQTHPEVTV-LDPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQL--VIERDASSIPDVVLKAGLTLPLVAKPL 104 (274)
Q Consensus 28 ~~y~~~~P~v~V-idp~~ai~~l~dR~~~~~~L~~~~~~~~~~~I~~P~~~--~~~~~~~~~~~~l~~~~l~~P~VvKp~ 104 (274)
++..+++ ++++ -.++++++.++||..|.+.|.++ ||++|++. .+. +.++..+.. ..++||+|+||.
T Consensus 92 ~~~~e~~-gi~~~g~~~~~~~~~~DK~~~r~~l~~~-------gIp~pp~~~~~v~-~~~~~~~~~--~~~g~PvvvKP~ 160 (451)
T PRK08591 92 AEICEDS-GFTFIGPSAETIRLMGDKVTAKATMKKA-------GVPVVPGSDGPVD-DEEEALAIA--KEIGYPVIIKAT 160 (451)
T ss_pred HHHHHHC-CCceECcCHHHHHHhcCHHHHHHHHHHc-------CCCCCCCcccccC-CHHHHHHHH--HHcCCCEEEEEC
Confidence 3334432 4554 47899999999999999999986 89998763 343 222233322 357899999998
Q ss_pred cCCCCccceeeEEEeChhhHhcc-------------CCCeEEEecccCCCeEEEEEEECCE---EEEEEEecCCCCcccc
Q 024006 105 VADGSAKSHELSLAYDQYSLKKL-------------EPPLVLQEFVNHGGVLFKVYIVGEA---IKVVRRFSLPDVTKQD 168 (274)
Q Consensus 105 ~a~Gs~~sh~m~iv~~~~~l~~l-------------~~p~vvQefI~h~g~~~KV~VIG~~---v~~~~R~S~p~~~~~~ 168 (274)
.|+ +|.++.++.++++|.+. +.++++||||+ +++.+-+-+++|. +....-+.. .
T Consensus 161 ~g~---gs~Gv~iv~~~~el~~~~~~~~~~~~~~~~~~~vlvEe~i~-g~~e~~v~v~~d~~g~~~~~~~~~~------~ 230 (451)
T PRK08591 161 AGG---GGRGMRVVRTEAELEKAFSMARAEAKAAFGNPGVYMEKYLE-NPRHIEIQVLADGHGNAIHLGERDC------S 230 (451)
T ss_pred CCC---CCceEEEECCHHHHHHHHHHHHHHHHHhcCCCCEEEEeCCC-CCcEEEEEEEEcCCCCEEEEecccc------c
Confidence 864 46789999999988642 34699999996 3677888777643 332211100 0
Q ss_pred cccCCceeeecCcccccccCCcCCCCccccCCCChHHHHHHHHHHHHHhCCcee-EEeEEEeCCCCCeEEEEeccCCCCC
Q 024006 169 LSTSAGVFRFPRVSCAAASADDADLDPCVAELPPRPLLERLAKELRRQLGLRLF-NLDIIREHGTRDQFYVIDINYFPGY 247 (274)
Q Consensus 169 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lA~~~~~~lGl~l~-G~Dvi~~~~~g~~~~ViDVN~fPg~ 247 (274)
..... .... .. + ....++++ ..++++++|.++.++||+.-. .+|++++. +| ++||+|||.-++-
T Consensus 231 ~~~~~-~~~~---~~-~---p~~~l~~~-----~~~~l~~~a~~~~~~lg~~G~~~vEf~~~~-~g-~~~viEINpR~~~ 295 (451)
T PRK08591 231 LQRRH-QKVL---EE-A---PSPAITEE-----LRRKIGEAAVKAAKAIGYRGAGTIEFLYEK-NG-EFYFIEMNTRIQV 295 (451)
T ss_pred ceecc-eeEE---EE-C---CCCCCCHH-----HHHHHHHHHHHHHHHcCCCceEEEEEEEcC-CC-CEEEEEEECCCCc
Confidence 00000 0000 00 0 00012221 146789999999999999844 49999985 34 6899999998864
Q ss_pred C
Q 024006 248 G 248 (274)
Q Consensus 248 ~ 248 (274)
.
T Consensus 296 ~ 296 (451)
T PRK08591 296 E 296 (451)
T ss_pred c
Confidence 3
No 48
>PLN02735 carbamoyl-phosphate synthase
Probab=99.47 E-value=2.1e-12 Score=137.06 Aligned_cols=188 Identities=15% Similarity=0.276 Sum_probs=126.3
Q ss_pred HHHHHHHHhCC--------Cc-EEeCcHHHHHHhcCHHHHHHHHHhccccCCCCCccCCCEEEEecCCCChhHHHHhcCC
Q 024006 25 QILEEYRQTHP--------EV-TVLDPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGL 95 (274)
Q Consensus 25 ~~l~~y~~~~P--------~v-~Vidp~~ai~~l~dR~~~~~~L~~~~~~~~~~~I~~P~~~~~~~~~~~~~~~l~~~~l 95 (274)
..+++++++++ ++ ++-.++++++.+.||..+-+.|.++ ||++|++..+.+ .++..+. ...+
T Consensus 667 ~~l~~~L~e~~~fa~~~~~gi~i~G~s~e~i~i~~DK~~~k~~l~~~-------GIp~p~~~~v~s-~eea~~~--a~~i 736 (1102)
T PLN02735 667 LPIQKYLDKNPPPSASGNGNVKIWGTSPDSIDAAEDRERFNAILNEL-------KIEQPKGGIARS-EADALAI--AKRI 736 (1102)
T ss_pred HHHHHHHHhccchhhhhcCCeEEECCCHHHHHHhcCHHHHHHHHHHc-------CCCCCCeeEeCC-HHHHHHH--HHhc
Confidence 45555555443 43 5568899999999999999999986 899999988753 2233332 2468
Q ss_pred CCcEEEeeCcCCCCccceeeEEEeChhhHhcc---------CCCeEEEecccCCCeEEEEEEECC---EEEE-EEEecCC
Q 024006 96 TLPLVAKPLVADGSAKSHELSLAYDQYSLKKL---------EPPLVLQEFVNHGGVLFKVYIVGE---AIKV-VRRFSLP 162 (274)
Q Consensus 96 ~~P~VvKp~~a~Gs~~sh~m~iv~~~~~l~~l---------~~p~vvQefI~h~g~~~KV~VIG~---~v~~-~~R~S~p 162 (274)
+||+|+||..+. +|.+|.++.++++|... +.|+++|+||+ +|+.+-|-+++| .+.. ..+....
T Consensus 737 GyPvvVKP~~g~---gG~G~~iV~~~eeL~~al~~a~~~~~~~~vlVEefI~-~g~Ei~V~vl~D~~G~vv~~~i~e~~~ 812 (1102)
T PLN02735 737 GYPVVVRPSYVL---GGRAMEIVYSDDKLKTYLETAVEVDPERPVLVDKYLS-DATEIDVDALADSEGNVVIGGIMEHIE 812 (1102)
T ss_pred CCCeEEEeCCCC---CCCcEEEECCHHHHHHHHHHHHHhcCCCCEEEEEecC-CcEEEEEEEEECCCCCEEEecceEeee
Confidence 999999998854 35699999999998642 35899999996 489999999975 2321 1111000
Q ss_pred CCcccccccCCceeeecCcccccccCCcCCCCccccCCCChHHHHHHHHHHHHHhCCc-eeEEeEEEeCCCCCeEEEEec
Q 024006 163 DVTKQDLSTSAGVFRFPRVSCAAASADDADLDPCVAELPPRPLLERLAKELRRQLGLR-LFNLDIIREHGTRDQFYVIDI 241 (274)
Q Consensus 163 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lA~~~~~~lGl~-l~G~Dvi~~~~~g~~~~ViDV 241 (274)
..|.....+.. ......++++. .++++++|.++.++||+. ++.+|++++. +| ++||+||
T Consensus 813 ---------~~gvhsGds~~----~~P~~~L~~e~-----~~~i~~~a~ki~~~L~~~G~~~vqf~v~~-dg-~~yviEi 872 (1102)
T PLN02735 813 ---------QAGVHSGDSAC----SLPTQTIPSSC-----LATIRDWTTKLAKRLNVCGLMNCQYAITP-SG-EVYIIEA 872 (1102)
T ss_pred ---------ccCccCCCccE----EecCCCCCHHH-----HHHHHHHHHHHHHHcCCcceeeEEEEEcC-CC-cEEEEEE
Confidence 00100000000 00001122221 356889999999999998 5559999964 34 5899999
Q ss_pred cCCCC
Q 024006 242 NYFPG 246 (274)
Q Consensus 242 N~fPg 246 (274)
|.-||
T Consensus 873 NpR~s 877 (1102)
T PLN02735 873 NPRAS 877 (1102)
T ss_pred eCCCC
Confidence 99998
No 49
>TIGR00514 accC acetyl-CoA carboxylase, biotin carboxylase subunit. This model represents the biotin carboxylase subunit found usually as a component of acetyl-CoA carboxylase. Acetyl-CoA carboxylase is designated EC 6.4.1.2 and this component, biotin carboxylase, has its own designation, EC 6.3.4.14. Homologous domains are found in eukaryotic forms of acetyl-CoA carboxylase and in a number of other carboxylases (e.g. pyruvate carboxylase), but seed members and trusted cutoff are selected so as to exclude these. In some systems, the biotin carboxyl carrier protein and this protein (biotin carboxylase) may be shared by different carboxyltransferases. However, this model is not intended to identify the biotin carboxylase domain of propionyl-coA carboxylase. The model should hit the full length of proteins, except for chloroplast transit peptides in plants. If it hits a domain only of a longer protein, there may be a problem with the identification.
Probab=99.46 E-value=3.2e-12 Score=123.95 Aligned_cols=178 Identities=12% Similarity=0.199 Sum_probs=116.3
Q ss_pred CcE-EeCcHHHHHHhcCHHHHHHHHHhccccCCCCCccCCCEE--EEecCCCChhHHHHhcCCCCcEEEeeCcCCCCccc
Q 024006 36 EVT-VLDPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQL--VIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKS 112 (274)
Q Consensus 36 ~v~-Vidp~~ai~~l~dR~~~~~~L~~~~~~~~~~~I~~P~~~--~~~~~~~~~~~~l~~~~l~~P~VvKp~~a~Gs~~s 112 (274)
+++ +-.++++++.++||..+.+.|.+. ||++|++. .++ +.+++.+.. ..++||+|+||..++ +|
T Consensus 99 Gi~~~g~~~~~~~~~~DK~~~r~~l~~~-------gip~pp~~~~~~~-~~~e~~~~~--~~ig~PvvvKP~~g~---gs 165 (449)
T TIGR00514 99 GFTFIGPSAESIRLMGDKVSAIETMKKA-------GVPCVPGSDGLVE-DEEENVRIA--KRIGYPVIIKATAGG---GG 165 (449)
T ss_pred CCcEECcCHHHHHHhCCHHHHHHHHHHC-------CCCCCCCcccCcC-CHHHHHHHH--HHhCCCEEEEeCCCC---CC
Confidence 455 457899999999999999999986 89998764 332 322232322 357899999999865 46
Q ss_pred eeeEEEeChhhHhcc-------------CCCeEEEecccCCCeEEEEEEECCE---EEEEEEecCCCCcccccccCCcee
Q 024006 113 HELSLAYDQYSLKKL-------------EPPLVLQEFVNHGGVLFKVYIVGEA---IKVVRRFSLPDVTKQDLSTSAGVF 176 (274)
Q Consensus 113 h~m~iv~~~~~l~~l-------------~~p~vvQefI~h~g~~~KV~VIG~~---v~~~~R~S~p~~~~~~~~~~~g~~ 176 (274)
.++.++.++++|... ..++++||||+ +++.+-+-|+++. +.....+ +. .....
T Consensus 166 ~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~vlvEe~i~-g~~e~~v~v~~d~~g~~~~~~~~---~~---~~~~~---- 234 (449)
T TIGR00514 166 RGMRVVREPDELVKSISMTRAEAKAAFGNDGVYIEKYIE-NPRHVEIQVLADKYGNAIYLGER---DC---SIQRR---- 234 (449)
T ss_pred CccEEECCHHHHHHHHHHHHHHHHHhCCCCCEEEEECCC-CCeEEEEEEEEcCCCCEEEEecc---cc---Cceec----
Confidence 799999999888542 34799999996 3678888777652 3222110 00 00000
Q ss_pred eecCcccccccCCcCCCCccccCCCChHHHHHHHHHHHHHhCCcee-EEeEEEeCCCCCeEEEEeccCCCCCC
Q 024006 177 RFPRVSCAAASADDADLDPCVAELPPRPLLERLAKELRRQLGLRLF-NLDIIREHGTRDQFYVIDINYFPGYG 248 (274)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lA~~~~~~lGl~l~-G~Dvi~~~~~g~~~~ViDVN~fPg~~ 248 (274)
+.... ..+....++++. .++++++|.++.++||+.-. .+|++++. +| ++||+|||.-+|-.
T Consensus 235 --~~~~~--~~~p~~~l~~~~-----~~~i~~~a~~~~~~lg~~G~~~vef~~~~-~g-~~~viEiNpR~~~~ 296 (449)
T TIGR00514 235 --HQKLL--EEAPSPALTPEL-----RRKMGDAAVKAAVSIGYRGAGTVEFLLDK-NG-EFYFMEMNTRIQVE 296 (449)
T ss_pred --ccceE--EECCCCCCCHHH-----HHHHHHHHHHHHHHCCCcceEEEEEEEeC-CC-CEEEEEEECCCCCC
Confidence 00000 000001122211 35788999999999999844 49999984 34 58999999888643
No 50
>PRK08463 acetyl-CoA carboxylase subunit A; Validated
Probab=99.45 E-value=4.6e-12 Score=123.98 Aligned_cols=184 Identities=10% Similarity=0.152 Sum_probs=121.0
Q ss_pred HHHHHhCCCcEEe-CcHHHHHHhcCHHHHHHHHHhccccCCCCCccCCCEEE-Ee-cCCCChhHHHHhcCCCCcEEEeeC
Q 024006 28 EEYRQTHPEVTVL-DPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLV-IE-RDASSIPDVVLKAGLTLPLVAKPL 104 (274)
Q Consensus 28 ~~y~~~~P~v~Vi-dp~~ai~~l~dR~~~~~~L~~~~~~~~~~~I~~P~~~~-~~-~~~~~~~~~l~~~~l~~P~VvKp~ 104 (274)
.+..+.+ +++++ .++++++.+.||..+.+.+.++ ||++|++.. .. .+.+++.+.. ..++||+|+||.
T Consensus 91 a~~~e~~-Gi~~iGps~~~i~~~~DK~~~k~~l~~~-------gIpvpp~~~~~~~~~~~~~~~~~--~~igyPvvvKP~ 160 (478)
T PRK08463 91 AKAVEDA-GIIFIGPKSEVIRKMGNKNIARYLMKKN-------GIPIVPGTEKLNSESMEEIKIFA--RKIGYPVILKAS 160 (478)
T ss_pred HHHHHHC-CCceecCCHHHHHhhCcHHHHHHHHHHc-------CCCCCCCccccCCCCHHHHHHHH--HHhCCCEEEEeC
Confidence 3334443 56665 6689999999999999999986 899977433 32 1222232322 358999999998
Q ss_pred cCCCCccceeeEEEeChhhHhcc-------------CCCeEEEecccCCCeEEEEEEECCE---EEEE-EEe-cCCCCcc
Q 024006 105 VADGSAKSHELSLAYDQYSLKKL-------------EPPLVLQEFVNHGGVLFKVYIVGEA---IKVV-RRF-SLPDVTK 166 (274)
Q Consensus 105 ~a~Gs~~sh~m~iv~~~~~l~~l-------------~~p~vvQefI~h~g~~~KV~VIG~~---v~~~-~R~-S~p~~~~ 166 (274)
.|+ +|.+|.++.++++|... +.++++|+||+ +++.+-+-|+|+. +... .|- +..
T Consensus 161 ~gg---Gg~Gv~iv~~~~eL~~a~~~~~~~a~~~~~~~~vlvEefI~-~~~~iev~v~~d~~g~v~~~~er~~s~~---- 232 (478)
T PRK08463 161 GGG---GGRGIRVVHKEEDLENAFESCKREALAYFNNDEVFMEKYVV-NPRHIEFQILGDNYGNIIHLCERDCSIQ---- 232 (478)
T ss_pred CCC---CCCceEEeCCHHHHHHHHHHHHHHHHHhcCCCcEEEEecCC-CCeEEEEEEEEcCCCCEEEEeccCCccc----
Confidence 864 46799999999988541 35799999997 3677888788764 3322 221 110
Q ss_pred cccccCCceeeecCcccccccCCcCCCCccccCCCChHHHHHHHHHHHHHhCCceeE-EeEEEeCCCCCeEEEEeccCCC
Q 024006 167 QDLSTSAGVFRFPRVSCAAASADDADLDPCVAELPPRPLLERLAKELRRQLGLRLFN-LDIIREHGTRDQFYVIDINYFP 245 (274)
Q Consensus 167 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lA~~~~~~lGl~l~G-~Dvi~~~~~g~~~~ViDVN~fP 245 (274)
.. +... ...+....++++. .++++++|.++.++||+.-+| +|++++. +| ++||+|||.=+
T Consensus 233 ----~~------~~~~--ie~~P~~~l~~~~-----~~~i~~~a~~~~~alg~~g~~~vEf~~~~-~~-~~y~iEiN~R~ 293 (478)
T PRK08463 233 ----RR------HQKV--IEIAPCPSISDNL-----RKTMGVTAVAAAKAVGYTNAGTIEFLLDD-YN-RFYFMEMNTRI 293 (478)
T ss_pred ----cc------cCce--EEECCCCCCCHHH-----HHHHHHHHHHHHHHcCCCCceeEEEEEcC-CC-CEEEEEEECCc
Confidence 00 0000 0000000122222 356789999999999999776 9999985 34 69999999888
Q ss_pred CCC
Q 024006 246 GYG 248 (274)
Q Consensus 246 g~~ 248 (274)
+-.
T Consensus 294 ~~~ 296 (478)
T PRK08463 294 QVE 296 (478)
T ss_pred CCC
Confidence 754
No 51
>PRK07178 pyruvate carboxylase subunit A; Validated
Probab=99.45 E-value=2.3e-12 Score=125.84 Aligned_cols=185 Identities=12% Similarity=0.174 Sum_probs=120.8
Q ss_pred HHHHHHhCCCcEEe-CcHHHHHHhcCHHHHHHHHHhccccCCCCCccCCCEEE--EecCCCChhHHHHhcCCCCcEEEee
Q 024006 27 LEEYRQTHPEVTVL-DPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLV--IERDASSIPDVVLKAGLTLPLVAKP 103 (274)
Q Consensus 27 l~~y~~~~P~v~Vi-dp~~ai~~l~dR~~~~~~L~~~~~~~~~~~I~~P~~~~--~~~~~~~~~~~l~~~~l~~P~VvKp 103 (274)
+.+..++. +++++ .++++++.+.||..+.+.|.+. ||++|++.. +. +.++..+. ...++||+|+||
T Consensus 90 ~a~~~e~~-Gi~~igps~~~i~~~~DK~~~r~~l~~~-------GIp~pp~~~~~~~-~~~e~~~~--~~~igyPvvvKp 158 (472)
T PRK07178 90 LAEICAER-GIKFIGPSAEVIRRMGDKTEARRAMIKA-------GVPVTPGSEGNLA-DLDEALAE--AERIGYPVMLKA 158 (472)
T ss_pred HHHHHHHc-CCCccCCCHHHHHHhcCHHHHHHHHHHC-------CCCCCCCcCcCCC-CHHHHHHH--HHHcCCcEEEEe
Confidence 33444443 56544 6689999999999999999986 899987753 22 22222222 246899999999
Q ss_pred CcCCCCccceeeEEEeChhhHhcc-------------CCCeEEEecccCCCeEEEEEEECCE---EEEE-EEecCCCCcc
Q 024006 104 LVADGSAKSHELSLAYDQYSLKKL-------------EPPLVLQEFVNHGGVLFKVYIVGEA---IKVV-RRFSLPDVTK 166 (274)
Q Consensus 104 ~~a~Gs~~sh~m~iv~~~~~l~~l-------------~~p~vvQefI~h~g~~~KV~VIG~~---v~~~-~R~S~p~~~~ 166 (274)
..|+ +|.+|.++.++++|.+. ..++++|+||+ +++.+-|-|+|+. +... .|. .
T Consensus 159 ~~gg---Gg~Gv~~v~~~~eL~~a~~~~~~~~~~~~~~~~v~iE~~i~-~~~eiev~v~~d~~G~~v~~~er~-~----- 228 (472)
T PRK07178 159 TSGG---GGRGIRRCNSREELEQNFPRVISEATKAFGSAEVFLEKCIV-NPKHIEVQILADSHGNVVHLFERD-C----- 228 (472)
T ss_pred CCCC---CCCCceEeCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEcCC-CCeEEEEEEEEECCCCEEEEEccc-c-----
Confidence 8864 46799999999988641 34799999996 5788888888653 3222 121 0
Q ss_pred cccccCCceeeecCcccccccCCcCCCCccccCCCChHHHHHHHHHHHHHhCCceeE-EeEEEeCCCCCeEEEEeccCCC
Q 024006 167 QDLSTSAGVFRFPRVSCAAASADDADLDPCVAELPPRPLLERLAKELRRQLGLRLFN-LDIIREHGTRDQFYVIDINYFP 245 (274)
Q Consensus 167 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lA~~~~~~lGl~l~G-~Dvi~~~~~g~~~~ViDVN~fP 245 (274)
..... +... ...+....++++. .++++++|.++.++||+.-.| +|++++.+ | ++|++|||.-+
T Consensus 229 -s~~~~------~~~~--~e~~P~~~l~~~~-----~~~i~~~a~~~~~aLg~~g~~~vEf~~d~~-g-~~y~iEiNpRl 292 (472)
T PRK07178 229 -SIQRR------NQKL--IEIAPSPQLTPEQ-----RAYIGDLAVRAAKAVGYENAGTVEFLLDAD-G-EVYFMEMNTRV 292 (472)
T ss_pred -ceEec------Ccce--EEECCCCCCCHHH-----HHHHHHHHHHHHHHcCCCceeEEEEEEeCC-C-CEEEEEEeCCc
Confidence 00000 0000 0000001222221 356889999999999998665 99999753 4 58999999888
Q ss_pred CCC
Q 024006 246 GYG 248 (274)
Q Consensus 246 g~~ 248 (274)
+-.
T Consensus 293 ~~~ 295 (472)
T PRK07178 293 QVE 295 (472)
T ss_pred CCC
Confidence 643
No 52
>PRK02186 argininosuccinate lyase; Provisional
Probab=99.44 E-value=4e-12 Score=132.80 Aligned_cols=171 Identities=19% Similarity=0.220 Sum_probs=116.0
Q ss_pred CcHHHHHHhcCHHHHHHHHHhccccCCCCCccCCCEEEEecCCCChhHHHHhcCCCCcEEEeeCcCCCCccceeeEEEeC
Q 024006 41 DPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYD 120 (274)
Q Consensus 41 dp~~ai~~l~dR~~~~~~L~~~~~~~~~~~I~~P~~~~~~~~~~~~~~~l~~~~l~~P~VvKp~~a~Gs~~sh~m~iv~~ 120 (274)
+++++++.++||..|-+.|++. ||++|++..+.+ .++..+.. ..++||+|+||..+. +|.++.++.+
T Consensus 97 ~~~ea~~~~~dK~~~r~~L~~~-------GIp~P~~~~v~~-~~e~~~~~--~~~~~PvVVKP~~g~---gS~GV~~v~~ 163 (887)
T PRK02186 97 ANTEAIRTCRDKKRLARTLRDH-------GIDVPRTHALAL-RAVALDAL--DGLTYPVVVKPRMGS---GSVGVRLCAS 163 (887)
T ss_pred CCHHHHHHhcCHHHHHHHHHHc-------CCCCCCEEEeCC-HHHHHHHH--HhCCCCEEEEeCCCC---CCCCeEEECC
Confidence 6789999999999999999986 899999998853 22333322 357999999999965 4568999999
Q ss_pred hhhHhcc--------CCCeEEEecccCCCeEEEEEEE--CCE--EEEEEEecCCCCcccccccCCceeeecCcccccccC
Q 024006 121 QYSLKKL--------EPPLVLQEFVNHGGVLFKVYIV--GEA--IKVVRRFSLPDVTKQDLSTSAGVFRFPRVSCAAASA 188 (274)
Q Consensus 121 ~~~l~~l--------~~p~vvQefI~h~g~~~KV~VI--G~~--v~~~~R~S~p~~~~~~~~~~~g~~~~~~~~~~~~~~ 188 (274)
.+++... ..++++||||+ |..|-|-++ ++. +.+..++.... .. .|. .. + ..
T Consensus 164 ~~el~~a~~~~~~~~~~~~lvEEfI~--G~E~sVe~i~~~g~~~i~~i~~k~~~~--------~~-~~v-e~----g-~~ 226 (887)
T PRK02186 164 VAEAAAHCAALRRAGTRAALVQAYVE--GDEYSVETLTVARGHQVLGITRKHLGP--------PP-HFV-EI----G-HD 226 (887)
T ss_pred HHHHHHHHHHHHhcCCCcEEEeeccc--CCcEEEEEEEECCcEEEEEEEeeecCC--------CC-CeE-Ee----c-cc
Confidence 9887542 56899999995 666666444 443 33344443210 00 010 00 0 00
Q ss_pred CcCCCCccccCCCChHHHHHHHHHHHHHhCCc--eeEEeEEEeCCCCCeEEEEeccCCCCCCC
Q 024006 189 DDADLDPCVAELPPRPLLERLAKELRRQLGLR--LFNLDIIREHGTRDQFYVIDINYFPGYGK 249 (274)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~lA~~~~~~lGl~--l~G~Dvi~~~~~g~~~~ViDVN~fPg~~g 249 (274)
.+..+++. ..+++.+++.++.++||+. .+++|+++++ + .++|+|||.-+|-..
T Consensus 227 ~P~~l~~~-----~~~~l~~~~~~~l~aLG~~~G~~hvE~~~t~-~--g~~liEIn~R~~G~~ 281 (887)
T PRK02186 227 FPAPLSAP-----QRERIVRTVLRALDAVGYAFGPAHTELRVRG-D--TVVIIEINPRLAGGM 281 (887)
T ss_pred cCCCCCHH-----HHHHHHHHHHHHHHHcCCCcCceEEEEEEEC-C--CEEEEEECCCCCCcc
Confidence 11112211 1356889999999999995 5789999974 3 489999999776433
No 53
>PRK06111 acetyl-CoA carboxylase biotin carboxylase subunit; Validated
Probab=99.41 E-value=1.2e-11 Score=119.42 Aligned_cols=177 Identities=12% Similarity=0.195 Sum_probs=114.0
Q ss_pred CcEEe-CcHHHHHHhcCHHHHHHHHHhccccCCCCCccCCCEE--EEecCCCChhHHHHhcCCCCcEEEeeCcCCCCccc
Q 024006 36 EVTVL-DPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQL--VIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKS 112 (274)
Q Consensus 36 ~v~Vi-dp~~ai~~l~dR~~~~~~L~~~~~~~~~~~I~~P~~~--~~~~~~~~~~~~l~~~~l~~P~VvKp~~a~Gs~~s 112 (274)
+++++ .+.++++.+.||..|.+.|.++ ||++|++. .++ +.+++.+.. ..++||+|+||..++ +|
T Consensus 99 g~~~~g~~~~~~~~~~dK~~~k~~l~~~-------gIp~p~~~~~~~~-~~~e~~~~~--~~~~~P~VvKP~~g~---gs 165 (450)
T PRK06111 99 GIVFIGPSADIIAKMGSKIEARRAMQAA-------GVPVVPGITTNLE-DAEEAIAIA--RQIGYPVMLKASAGG---GG 165 (450)
T ss_pred CCeEECCCHHHHHHhCCHHHHHHHHHHC-------CCCCCCCcCcCcC-CHHHHHHHH--HHhCCCEEEEeCCCC---CC
Confidence 45554 6689999999999999999986 89999863 232 322233322 357899999998864 46
Q ss_pred eeeEEEeChhhHhcc-------------CCCeEEEecccCCCeEEEEEEECC---EEEEEEEecCCCCcccccccCCcee
Q 024006 113 HELSLAYDQYSLKKL-------------EPPLVLQEFVNHGGVLFKVYIVGE---AIKVVRRFSLPDVTKQDLSTSAGVF 176 (274)
Q Consensus 113 h~m~iv~~~~~l~~l-------------~~p~vvQefI~h~g~~~KV~VIG~---~v~~~~R~S~p~~~~~~~~~~~g~~ 176 (274)
+++.++.+.++|.+. +.++++||||+ +++.+.+.++++ ++.....+..+ +.
T Consensus 166 ~Gv~iv~~~~el~~a~~~~~~~~~~~~~~~~~lvEe~i~-g~~e~~v~v~~~~~g~~~~~~~~~~~-~~----------- 232 (450)
T PRK06111 166 IGMQLVETEQELTKAFESNKKRAANFFGNGEMYIEKYIE-DPRHIEIQLLADTHGNTVYLWERECS-VQ----------- 232 (450)
T ss_pred ceEEEECCHHHHHHHHHHHHHHHHHhcCCCcEEEEcccC-CCcEEEEEEEEcCCCCEEEEEeeccc-cc-----------
Confidence 799999999887531 34799999996 346677766654 23322111100 00
Q ss_pred eecCcccccccCCcCCCCccccCCCChHHHHHHHHHHHHHhCCc-eeEEeEEEeCCCCCeEEEEeccCCCCC
Q 024006 177 RFPRVSCAAASADDADLDPCVAELPPRPLLERLAKELRRQLGLR-LFNLDIIREHGTRDQFYVIDINYFPGY 247 (274)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lA~~~~~~lGl~-l~G~Dvi~~~~~g~~~~ViDVN~fPg~ 247 (274)
..+...... +....++++ ..++++++|.++.++||+. ++.+|++++. +| ++||+|||.-|+-
T Consensus 233 ~~~~~~~~~--~p~~~~~~~-----~~~~i~~~a~~~~~~lg~~g~~~ve~~~~~-~g-~~~viEiN~R~~~ 295 (450)
T PRK06111 233 RRHQKVIEE--APSPFLDEE-----TRKAMGERAVQAAKAIGYTNAGTIEFLVDE-QK-NFYFLEMNTRLQV 295 (450)
T ss_pred ccccceEEe--cCCCCCCHH-----HHHHHHHHHHHHHHHcCCCCceeEEEEEcC-CC-CEEEEEEECCcCC
Confidence 000000000 000011111 1356889999999999997 5559999985 34 5899999998864
No 54
>TIGR01235 pyruv_carbox pyruvate carboxylase. This enzyme plays a role in gluconeogensis but not glycolysis.
Probab=99.40 E-value=6.9e-12 Score=133.11 Aligned_cols=177 Identities=12% Similarity=0.161 Sum_probs=119.9
Q ss_pred CcEEe-CcHHHHHHhcCHHHHHHHHHhccccCCCCCccCCCEEEE-ecCCCChhHHHHhcCCCCcEEEeeCcCCCCccce
Q 024006 36 EVTVL-DPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVI-ERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSH 113 (274)
Q Consensus 36 ~v~Vi-dp~~ai~~l~dR~~~~~~L~~~~~~~~~~~I~~P~~~~~-~~~~~~~~~~l~~~~l~~P~VvKp~~a~Gs~~sh 113 (274)
++.++ .++++++.+.||..+.+.+.+. ||++|++... -.+.++..+.. ..++||+|+||..|+ +|+
T Consensus 99 Gi~fiGps~e~i~~~~DK~~ar~la~~~-------GVPvpp~t~~~v~~~eea~~~a--e~iGyPvIVKP~~GG---GGr 166 (1143)
T TIGR01235 99 GIIFIGPKAEVMDQLGDKVAARNLAIKA-------GVPVVPGTDGPPETMEEVLDFA--AAIGYPVIIKASWGG---GGR 166 (1143)
T ss_pred CCcccCCCHHHHHHhcCHHHHHHHHHHc-------CCCCCCCcccCcCCHHHHHHHH--HHcCCCEEEEECCCC---CCC
Confidence 55555 5689999999999999999886 8999886532 12222233322 357999999998864 467
Q ss_pred eeEEEeChhhHhcc-------------CCCeEEEecccCCCeEEEEEEECCE---EEE-EEEe-cCCCCcccccccCCce
Q 024006 114 ELSLAYDQYSLKKL-------------EPPLVLQEFVNHGGVLFKVYIVGEA---IKV-VRRF-SLPDVTKQDLSTSAGV 175 (274)
Q Consensus 114 ~m~iv~~~~~l~~l-------------~~p~vvQefI~h~g~~~KV~VIG~~---v~~-~~R~-S~p~~~~~~~~~~~g~ 175 (274)
+|.++.++++|... +.++++|+||+ +++.+.|-|+||. ++. ..|- |... .
T Consensus 167 G~riV~~~eEL~~a~~~a~~ea~~~fg~~~vlIEefI~-g~reIeVqVlgD~~G~vv~l~eRdcsvqr--------r--- 234 (1143)
T TIGR01235 167 GMRVVRSEADVADAFQRAKSEAKAAFGNDEVYVEKLIE-RPRHIEVQLLGDKHGNVVHLFERDCSVQR--------R--- 234 (1143)
T ss_pred ccEEeCCHHHHHHHHHHHHHHHHHhcCCCcEEEEEcCC-CCeEEEEEEEEeCCCCEEEEEeccccccc--------c---
Confidence 99999999888542 35799999996 4788999999875 332 2332 1110 0
Q ss_pred eeecCcccccccCCcCCCCccccCCCChHHHHHHHHHHHHHhCCceeE-EeEEEeCCCCCeEEEEeccCCCCCC
Q 024006 176 FRFPRVSCAAASADDADLDPCVAELPPRPLLERLAKELRRQLGLRLFN-LDIIREHGTRDQFYVIDINYFPGYG 248 (274)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lA~~~~~~lGl~l~G-~Dvi~~~~~g~~~~ViDVN~fPg~~ 248 (274)
+.... ..+....++++. .+++.++|.++.+++|+.-+| ||++++. +| ++|++|||.-++..
T Consensus 235 ---~qk~i--e~aPa~~L~~e~-----r~~I~~~A~kla~aLgy~G~gtVEFlvd~-dg-~~yfIEVNPRiqve 296 (1143)
T TIGR01235 235 ---HQKVV--EVAPAPYLSREV-----RDEIAEYAVKLAKAVNYINAGTVEFLVDN-DG-KFYFIEVNPRIQVE 296 (1143)
T ss_pred ---CceEE--EEeCCCCCCHHH-----HHHHHHHHHHHHHHcCCcceEEEEEEEeC-CC-cEEEEEeecCCCcc
Confidence 00000 000001122211 357889999999999988666 9999985 34 68999999998743
No 55
>PRK12815 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=99.40 E-value=1.3e-11 Score=131.17 Aligned_cols=175 Identities=17% Similarity=0.348 Sum_probs=119.3
Q ss_pred CCcEEe-CcHHHHHHhcCHHHHHHHHHhccccCCCCCccCCCEEEEecCCCChhHHHHhcCCCCcEEEeeCcCCCCccce
Q 024006 35 PEVTVL-DPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSH 113 (274)
Q Consensus 35 P~v~Vi-dp~~ai~~l~dR~~~~~~L~~~~~~~~~~~I~~P~~~~~~~~~~~~~~~l~~~~l~~P~VvKp~~a~Gs~~sh 113 (274)
.++.++ .+++++..+.||..+.+.|.++ ||++|++..+.+ .+++.+.. ..++||+|+||..+. ++.
T Consensus 653 ~Gi~ilG~s~e~i~~~~DK~~f~~ll~~~-------GIp~P~~~~~~s-~ee~~~~~--~~igyPvVVKP~~~~---Gg~ 719 (1068)
T PRK12815 653 AGLTILGTSPDTIDRLEDRDRFYQLLDEL-------GLPHVPGLTATD-EEEAFAFA--KRIGYPVLIRPSYVI---GGQ 719 (1068)
T ss_pred CCCeEECCcHHHHHHHcCHHHHHHHHHHc-------CcCCCCeEEeCC-HHHHHHHH--HhcCCCEEEEeCCCC---CCC
Confidence 356654 6799999999999999999986 899999998853 22333322 458999999998854 468
Q ss_pred eeEEEeChhhHhcc-------CCCeEEEecccCCCeEEEEEEECC--EEEE--EEEecCCCCcccccccCCceeeecCcc
Q 024006 114 ELSLAYDQYSLKKL-------EPPLVLQEFVNHGGVLFKVYIVGE--AIKV--VRRFSLPDVTKQDLSTSAGVFRFPRVS 182 (274)
Q Consensus 114 ~m~iv~~~~~l~~l-------~~p~vvQefI~h~g~~~KV~VIG~--~v~~--~~R~S~p~~~~~~~~~~~g~~~~~~~~ 182 (274)
+|.++.++++|..+ ..|+++|||| .|.++-|-++.| .+.. .+.... ..|. +...
T Consensus 720 gv~iv~~~eeL~~~l~~~~s~~~~vlIeefI--~G~E~~Vd~i~dg~~v~i~~i~e~~e----------~~gv---~sGd 784 (1068)
T PRK12815 720 GMAVVYDEPALEAYLAENASQLYPILIDQFI--DGKEYEVDAISDGEDVTIPGIIEHIE----------QAGV---HSGD 784 (1068)
T ss_pred CEEEECCHHHHHHHHHHhhcCCCCEEEEEee--cCceEEEEEEEcCCceEEeeEEEEee----------ccCC---cCCC
Confidence 99999999988652 5689999999 577777777743 3322 111100 0010 0000
Q ss_pred cccccCCcCCCCccccCCCChHHHHHHHHHHHHHhCCc-eeEEeEEEeCCCCCeEEEEeccCCCC
Q 024006 183 CAAASADDADLDPCVAELPPRPLLERLAKELRRQLGLR-LFNLDIIREHGTRDQFYVIDINYFPG 246 (274)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~lA~~~~~~lGl~-l~G~Dvi~~~~~g~~~~ViDVN~fPg 246 (274)
. .....+..++++ ..+++++++.++.++||+. ++++|+++++ + .+||+|||.-+|
T Consensus 785 s-~~v~pp~~l~~~-----~~~~i~~~a~ki~~~L~~~G~~niqf~v~~--~-~~yviEiNpR~s 840 (1068)
T PRK12815 785 S-IAVLPPQSLSEE-----QQEKIRDYAIKIAKKLGFRGIMNIQFVLAN--D-EIYVLEVNPRAS 840 (1068)
T ss_pred e-eEEECCCCCCHH-----HHHHHHHHHHHHHHHcCCccEEEEEEEEEC--C-cEEEEEEeCCCC
Confidence 0 000001112211 1467899999999999988 6679999974 3 589999999987
No 56
>PRK00885 phosphoribosylamine--glycine ligase; Provisional
Probab=99.40 E-value=2.3e-11 Score=116.93 Aligned_cols=111 Identities=13% Similarity=0.095 Sum_probs=82.5
Q ss_pred HHHHHHHHhCCCcEEe-CcHHHHHHhcCHHHHHHHHHhccccCCCCCccCCCEEEEecCCCChhHHHHhcCCCCcEEEee
Q 024006 25 QILEEYRQTHPEVTVL-DPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKP 103 (274)
Q Consensus 25 ~~l~~y~~~~P~v~Vi-dp~~ai~~l~dR~~~~~~L~~~~~~~~~~~I~~P~~~~~~~~~~~~~~~l~~~~l~~P~VvKp 103 (274)
..+.+..++ -+++++ .+.++++.+.||..|-+.|++. ||++|++..+. +.+++.+.+ ..++||+|+||
T Consensus 76 ~~~~~~l~~-~gi~~~g~~~~~~~~~~dK~~~k~~l~~~-------gip~p~~~~~~-~~~~~~~~~--~~~~~P~VvKP 144 (420)
T PRK00885 76 AGIVDAFRA-AGLPIFGPTKAAAQLEGSKAFAKDFMARY-------GIPTAAYETFT-DAEEALAYL--DEKGAPIVVKA 144 (420)
T ss_pred HHHHHHHHH-CCCcEECcCHHHHHHHcCHHHHHHHHHHc-------CCCCCCeEEeC-CHHHHHHHH--HHcCCCEEEEe
Confidence 344444444 366766 5678999999999999999986 89999999885 322333323 34789999999
Q ss_pred CcCCCCccceeeEEEeChhhHhcc-------------CCCeEEEecccCCCeEEEEEEECC
Q 024006 104 LVADGSAKSHELSLAYDQYSLKKL-------------EPPLVLQEFVNHGGVLFKVYIVGE 151 (274)
Q Consensus 104 ~~a~Gs~~sh~m~iv~~~~~l~~l-------------~~p~vvQefI~h~g~~~KV~VIG~ 151 (274)
..++ +|.++.++.+++++.+. ..++++||||+ |..+.|.++.+
T Consensus 145 ~~~~---gs~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~vlvEe~i~--G~E~sv~~~~~ 200 (420)
T PRK00885 145 DGLA---AGKGVVVAMTLEEAKAAVDDMLAGNKFGDAGARVVIEEFLD--GEEASFFAFVD 200 (420)
T ss_pred CCCC---CCCcEEEeCCHHHHHHHHHHHhhcccccCCCCeEEEEEccC--CcEEEEEEEEC
Confidence 8754 46689999999887531 24799999995 78999888743
No 57
>PLN02257 phosphoribosylamine--glycine ligase
Probab=99.39 E-value=4.8e-11 Score=115.55 Aligned_cols=215 Identities=12% Similarity=0.071 Sum_probs=130.2
Q ss_pred HHHHHHHHHHHhCCCcEEe-CcHHHHHHhcCHHHHHHHHHhccccCCCCCccCCCEEEEecCCCChhHHHHhcCCCCcEE
Q 024006 22 EWRQILEEYRQTHPEVTVL-DPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLV 100 (274)
Q Consensus 22 ~~~~~l~~y~~~~P~v~Vi-dp~~ai~~l~dR~~~~~~L~~~~~~~~~~~I~~P~~~~~~~~~~~~~~~l~~~~l~~P~V 100 (274)
+....+.++++.+ +++++ -+.++++...||..+-+.|.++ |||+|++..+. +.+++.+.+ ..++||+|
T Consensus 73 ~lv~~~~d~l~~~-Gi~~~Gps~~aa~l~~dK~~~K~~l~~~-------GIptp~~~~~~-~~~e~~~~~--~~~g~PvV 141 (434)
T PLN02257 73 PLVAGLADDLVKA-GIPTFGPSAEAAALEGSKNFMKDLCDKY-------KIPTAKYETFT-DPAAAKKYI--KEQGAPIV 141 (434)
T ss_pred HHHHHHHHHHHHC-CCCEECChHHHHHHHcCHHHHHHHHHHc-------CCCCCCeEEeC-CHHHHHHHH--HHcCCCEE
Confidence 3445666666553 56655 6678999999999999999986 89999998885 333333333 35789999
Q ss_pred EeeCcCCCCccceeeEEEeChhhHhcc-------------CCCeEEEecccCCCeEEEEEEECC--EEEEEEEecCCCCc
Q 024006 101 AKPLVADGSAKSHELSLAYDQYSLKKL-------------EPPLVLQEFVNHGGVLFKVYIVGE--AIKVVRRFSLPDVT 165 (274)
Q Consensus 101 vKp~~a~Gs~~sh~m~iv~~~~~l~~l-------------~~p~vvQefI~h~g~~~KV~VIG~--~v~~~~R~S~p~~~ 165 (274)
+||..++ .|.+|.++.+.+++.+. ..++++|||| .|.++-|.++.| .++.. ..+
T Consensus 142 VKp~~~~---~GkGV~iv~~~~el~~a~~~~~~~~~fg~~~~~vlIEefi--~G~E~Sv~~~~dG~~~~pl----~~~-- 210 (434)
T PLN02257 142 VKADGLA---AGKGVVVAMTLEEAYEAVDSMLVKGAFGSAGSEVVVEEFL--DGEEASFFALVDGENAIPL----ESA-- 210 (434)
T ss_pred EEcCCCC---CCCCEEEECCHHHHHHHHHHHHhhhhccCCCCeEEEEECC--CCCEEEEEEEECCCcEEEE----Eee--
Confidence 9998542 46799999999876431 3579999999 488999977633 22211 001
Q ss_pred ccccccCCceeeecCcccccccCCcCCCCccccCCCChHH----HHHHHH---HHHHHhCCceeE---EeEEEeCCCCCe
Q 024006 166 KQDLSTSAGVFRFPRVSCAAASADDADLDPCVAELPPRPL----LERLAK---ELRRQLGLRLFN---LDIIREHGTRDQ 235 (274)
Q Consensus 166 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~lA~---~~~~~lGl~l~G---~Dvi~~~~~g~~ 235 (274)
.....+|+++.....+.. ....|.. .++ .+. .++++. +..++.|+.+.| +|++++..+| .
T Consensus 211 ----~dhkr~~d~d~g~ntggm---g~~sp~p-~l~-~~~~~~i~~~i~~~~~~al~~~g~~y~Gvl~ve~ml~~~~g-~ 280 (434)
T PLN02257 211 ----QDHKRVGDGDTGPNTGGM---GAYSPAP-VLT-PELESKVMETIIYPTVKGMAAEGCKFVGVLYAGLMIEKKSG-L 280 (434)
T ss_pred ----eecccccCCCCCCCCCCC---eeEecCC-CCC-HHHHHHHHHHHHHHHHHHHHHcCCCcEEEEEEEEEEEcCCC-C
Confidence 001122333332211100 0011100 011 122 233332 334578888776 8999872234 4
Q ss_pred EEEEeccCCCCCCCc----ccchHHHHHHHHHHHHhh
Q 024006 236 FYVIDINYFPGYGKM----PEYEHIFTDFLLSLTQSR 268 (274)
Q Consensus 236 ~~ViDVN~fPg~~g~----~~~~~~l~~~l~~~~~~~ 268 (274)
++|+|+|.-||...- +.....|.+.+...+..+
T Consensus 281 p~vLE~N~R~Gdpe~~~~l~~l~~Dl~~~~~~~~~g~ 317 (434)
T PLN02257 281 PKLLEYNVRFGDPECQVLMMRLESDLAQVLLAACKGE 317 (434)
T ss_pred EEEEEEECCCCCCchheEehhhcCCHHHHHHHHHcCC
Confidence 899999999996422 233455666776666553
No 58
>TIGR01369 CPSaseII_lrg carbamoyl-phosphate synthase, large subunit. In several thermophilic species (Methanobacterium thermoautotrophicum, Methanococcus jannaschii, Aquifex aeolicus), the large subunit appears split, at different points, into two separate genes.
Probab=99.36 E-value=2.1e-11 Score=129.33 Aligned_cols=179 Identities=16% Similarity=0.281 Sum_probs=118.8
Q ss_pred CcEEe-CcHHHHHHhcCHHHHHHHHHhccccCCCCCccCCCEEEEecCCCChhHHHHhcCCCCcEEEeeCcCCCCcccee
Q 024006 36 EVTVL-DPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHE 114 (274)
Q Consensus 36 ~v~Vi-dp~~ai~~l~dR~~~~~~L~~~~~~~~~~~I~~P~~~~~~~~~~~~~~~l~~~~l~~P~VvKp~~a~Gs~~sh~ 114 (274)
++.++ .++++++.+.||..+.+.|.++ |+++|++..+++ .++..+.. ..++||+|+||..+. +|.+
T Consensus 111 Gv~~~G~~~~ai~~~~DK~~~k~~l~~~-------Gipvp~~~~v~s-~~e~~~~~--~~igyPvIVKP~~g~---gg~G 177 (1050)
T TIGR01369 111 GVEVLGTPVEAIKKAEDRELFREAMKEI-------GEPVPESEIAHS-VEEALAAA--KEIGYPVIVRPAFTL---GGTG 177 (1050)
T ss_pred CCEEECCCHHHHHHhCCHHHHHHHHHHC-------CCCCCCeeecCC-HHHHHHHH--HHhCCCeEEECCCCC---CCCC
Confidence 56665 7899999999999999999986 899999998853 22233322 357999999998753 4678
Q ss_pred eEEEeChhhHhcc-----C----CCeEEEecccCCC-eEEEEEEECCE---EEEEEEecCCCCcccccccCCceeeecCc
Q 024006 115 LSLAYDQYSLKKL-----E----PPLVLQEFVNHGG-VLFKVYIVGEA---IKVVRRFSLPDVTKQDLSTSAGVFRFPRV 181 (274)
Q Consensus 115 m~iv~~~~~l~~l-----~----~p~vvQefI~h~g-~~~KV~VIG~~---v~~~~R~S~p~~~~~~~~~~~g~~~~~~~ 181 (274)
+.++.++++|... . .++++||||+ | +.+-+-|++|. +... .+.-++.+....+.+ ..
T Consensus 178 v~iv~~~eeL~~~~~~~~~~s~~~~vlVEe~I~--G~~Eiev~v~rd~~g~~~~~--~~~e~~~p~gvh~g~------~i 247 (1050)
T TIGR01369 178 GGIAYNREELKEIAERALSASPINQVLVEKSLA--GWKEIEYEVMRDSNDNCITV--CNMENFDPMGVHTGD------SI 247 (1050)
T ss_pred eEEECCHHHHHHHHHHHHhcCCCCcEEEEEccc--CceEEEEEEEEeCCCCEEEE--eeceeccCcceecCc------eE
Confidence 8999999988653 1 5799999995 5 67888777542 2211 111111110000000 00
Q ss_pred ccccccCCcCCCCccccCCCChHHHHHHHHHHHHHhCCc-eeEEeEEEeCCCCCeEEEEeccCCCCC
Q 024006 182 SCAAASADDADLDPCVAELPPRPLLERLAKELRRQLGLR-LFNLDIIREHGTRDQFYVIDINYFPGY 247 (274)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lA~~~~~~lGl~-l~G~Dvi~~~~~g~~~~ViDVN~fPg~ 247 (274)
.. .....+++. ..++++++|.++.++||+. .+.+|+.++.++| ++||+|||.-++-
T Consensus 248 ~v----~Pa~tl~~~-----~~~~l~~~a~~i~~~Lg~~G~~~Vef~l~~~~g-~~~viEiNPR~~~ 304 (1050)
T TIGR01369 248 VV----APSQTLTDK-----EYQMLRDASIKIIRELGIEGGCNVQFALNPDSG-RYYVIEVNPRVSR 304 (1050)
T ss_pred EE----ecCCCCCHH-----HHHHHHHHHHHHHHHcCCcceeEEEEEEECCCC-cEEEEEeecCcCc
Confidence 00 000011111 1346899999999999998 4569999985445 7999999977763
No 59
>PLN02735 carbamoyl-phosphate synthase
Probab=99.36 E-value=2.2e-11 Score=129.49 Aligned_cols=178 Identities=13% Similarity=0.241 Sum_probs=116.8
Q ss_pred CcEE-eCcHHHHHHhcCHHHHHHHHHhccccCCCCCccCCCEEEEecCCCChhHHHHhcCCC-CcEEEeeCcCCCCccce
Q 024006 36 EVTV-LDPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLT-LPLVAKPLVADGSAKSH 113 (274)
Q Consensus 36 ~v~V-idp~~ai~~l~dR~~~~~~L~~~~~~~~~~~I~~P~~~~~~~~~~~~~~~l~~~~l~-~P~VvKp~~a~Gs~~sh 113 (274)
++++ -.+++++..++||..+-+.|.+. ||++|++..+.+ .++..+.. ..++ ||+|+||..+.| +.
T Consensus 128 GI~~~G~~~~ai~~~~DK~~~k~~l~~~-------GIpvp~~~~v~s-~eea~~~~--~~iG~yPvVVKP~~~~G---G~ 194 (1102)
T PLN02735 128 GVELIGAKLDAIKKAEDRELFKQAMEKI-------GLKTPPSGIATT-LDECFEIA--EDIGEFPLIIRPAFTLG---GT 194 (1102)
T ss_pred CCEEECCCHHHHHHhcCHHHHHHHHHHC-------CCCCCCeeEeCC-HHHHHHHH--HHhCCCCEEEEeCCCCC---CC
Confidence 4444 46889999999999999999986 899999998853 22233322 3466 999999988544 44
Q ss_pred eeEEEeChhhHhcc---------CCCeEEEecccCCC-eEEEEEEECCE---EEEEEEecCCCCcccccccCCceeeecC
Q 024006 114 ELSLAYDQYSLKKL---------EPPLVLQEFVNHGG-VLFKVYIVGEA---IKVVRRFSLPDVTKQDLSTSAGVFRFPR 180 (274)
Q Consensus 114 ~m~iv~~~~~l~~l---------~~p~vvQefI~h~g-~~~KV~VIG~~---v~~~~R~S~p~~~~~~~~~~~g~~~~~~ 180 (274)
++.++.++++|... ..++++||||. | +.|-|-|++|. +... .+.-+++.....+.+ .
T Consensus 195 Gv~iv~n~eEL~~a~~~a~~~s~~~~VLVEe~I~--G~kE~ev~Vl~D~~g~~i~v--~~ie~~dp~gvh~G~------s 264 (1102)
T PLN02735 195 GGGIAYNKEEFETICKAGLAASITSQVLVEKSLL--GWKEYELEVMRDLADNVVII--CSIENIDPMGVHTGD------S 264 (1102)
T ss_pred ceEEECCHHHHHHHHHHHHhcCCCCeEEEEEecC--CCeEEEEEEEEcCCCCEEEE--eeEEEEcCCccccCC------E
Confidence 78899999998652 45799999995 5 78999999762 2211 111011000000000 0
Q ss_pred cccccccCCcCCCCccccCCCChHHHHHHHHHHHHHhCCc--eeEEeEEEeCCCCCeEEEEeccCCCC
Q 024006 181 VSCAAASADDADLDPCVAELPPRPLLERLAKELRRQLGLR--LFNLDIIREHGTRDQFYVIDINYFPG 246 (274)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lA~~~~~~lGl~--l~G~Dvi~~~~~g~~~~ViDVN~fPg 246 (274)
.. ......++++. .++++++|.++.++||+. .+.+|++++..+| ++||+|||.-+|
T Consensus 265 ~~----vaPa~tL~~~~-----~q~l~~~A~ki~~aLgi~~G~~nVqf~l~~~~g-~~~ViEVNPR~s 322 (1102)
T PLN02735 265 IT----VAPAQTLTDKE-----YQRLRDYSVAIIREIGVECGGSNVQFAVNPVDG-EVMIIEMNPRVS 322 (1102)
T ss_pred EE----EEeCCCCCHHH-----HHHHHHHHHHHHHHhCCCcCceEEEEEEECCCC-cEEEEEecCCCC
Confidence 00 00000122111 357899999999999994 7789999984345 699999995444
No 60
>PRK05294 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=99.36 E-value=2.1e-11 Score=129.64 Aligned_cols=176 Identities=15% Similarity=0.248 Sum_probs=118.4
Q ss_pred CcEEe-CcHHHHHHhcCHHHHHHHHHhccccCCCCCccCCCEEEEecCCCChhHHHHhcCCCCcEEEeeCcCCCCcccee
Q 024006 36 EVTVL-DPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHE 114 (274)
Q Consensus 36 ~v~Vi-dp~~ai~~l~dR~~~~~~L~~~~~~~~~~~I~~P~~~~~~~~~~~~~~~l~~~~l~~P~VvKp~~a~Gs~~sh~ 114 (274)
++.++ -++++++.+.||..+.+.|.++ ||++|++..+++ .+++.+.. ..++||+|+||..|. ++.+
T Consensus 112 Gv~~~g~~~~~i~~~~DK~~~k~~l~~~-------Gipvp~~~~v~s-~~e~~~~~--~~ig~PvVVKP~~g~---gg~G 178 (1066)
T PRK05294 112 GVELIGAKLEAIDKAEDRELFKEAMKKI-------GLPVPRSGIAHS-MEEALEVA--EEIGYPVIIRPSFTL---GGTG 178 (1066)
T ss_pred CCEEECCCHHHHHHhcCHHHHHHHHHHC-------CcCCCCeeeeCC-HHHHHHHH--HHcCCCeEEEcCCCC---CCCC
Confidence 46665 5789999999999999999986 899999999853 22333322 357899999998754 5678
Q ss_pred eEEEeChhhHhcc---------CCCeEEEecccCCC-eEEEEEEECCE---EEEEEEecCCCCcccccccCCceeeecCc
Q 024006 115 LSLAYDQYSLKKL---------EPPLVLQEFVNHGG-VLFKVYIVGEA---IKVVRRFSLPDVTKQDLSTSAGVFRFPRV 181 (274)
Q Consensus 115 m~iv~~~~~l~~l---------~~p~vvQefI~h~g-~~~KV~VIG~~---v~~~~R~S~p~~~~~~~~~~~g~~~~~~~ 181 (274)
+.++.++++|... ..++++||||+ | +.+-+-|+.|. +..+. +.-+++... .|..
T Consensus 179 v~iv~~~eeL~~a~~~~~~~s~~~~vlvEe~I~--G~~Eisv~v~rd~~g~~~~~~--~~e~~dp~g---------ih~g 245 (1066)
T PRK05294 179 GGIAYNEEELEEIVERGLDLSPVTEVLIEESLL--GWKEYEYEVMRDKNDNCIIVC--SIENIDPMG---------VHTG 245 (1066)
T ss_pred eEEECCHHHHHHHHHHHHhhCCCCeEEEEEccc--CceEEEEEEEEcCCCCEEEEe--eeeeccccc---------eecC
Confidence 9999999988642 24799999995 5 67888777542 32211 111111000 0100
Q ss_pred ccccc-cCCcC-CCCccccCCCChHHHHHHHHHHHHHhCCc--eeEEeEEEeCCCCCeEEEEeccCCCC
Q 024006 182 SCAAA-SADDA-DLDPCVAELPPRPLLERLAKELRRQLGLR--LFNLDIIREHGTRDQFYVIDINYFPG 246 (274)
Q Consensus 182 ~~~~~-~~~~~-~~~~~~~~~~~~~~~~~lA~~~~~~lGl~--l~G~Dvi~~~~~g~~~~ViDVN~fPg 246 (274)
+. ...++ .+++. ..++++++|.++.++||+. .+.+|+.++.++| ++||+|||.-++
T Consensus 246 ---~~~~~~Pa~~l~~~-----~~~~l~~~a~ki~~aLg~~~G~~~vef~~~~~~g-~~~viEiNPR~~ 305 (1066)
T PRK05294 246 ---DSITVAPAQTLTDK-----EYQMLRDASIAIIREIGVETGGCNVQFALNPKDG-RYIVIEMNPRVS 305 (1066)
T ss_pred ---CeEEEeCCCCCCHH-----HHHHHHHHHHHHHHHcCCccCceEEEEEEECCCC-cEEEEEeecCCC
Confidence 00 00000 11111 1356899999999999998 6779999985445 699999996665
No 61
>TIGR00877 purD phosphoribosylamine--glycine ligase. This enzyme appears as a monofunctional protein in prokaryotes but as part of a larger, multidomain protein in eukaryotes.
Probab=99.32 E-value=8.7e-11 Score=112.76 Aligned_cols=189 Identities=12% Similarity=0.115 Sum_probs=115.5
Q ss_pred HHHHHHHHhCCCcEEe-CcHHHHHHhcCHHHHHHHHHhccccCCCCCccCCCEEEEecCCCChhHHHHhcCCCCc-EEEe
Q 024006 25 QILEEYRQTHPEVTVL-DPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLP-LVAK 102 (274)
Q Consensus 25 ~~l~~y~~~~P~v~Vi-dp~~ai~~l~dR~~~~~~L~~~~~~~~~~~I~~P~~~~~~~~~~~~~~~l~~~~l~~P-~VvK 102 (274)
..+.+..+++ +++++ .+.++++.++||..|-+.|++. ||++|++..+. +.+++.+.+ ..++|| +|+|
T Consensus 78 ~~~~~~l~~~-gi~~~g~~~~~~~~~~dK~~~k~~l~~~-------gIp~p~~~~~~-~~~~~~~~~--~~~g~P~~VvK 146 (423)
T TIGR00877 78 LGLVDALEEA-GIPVFGPTKEAAQLEGSKAFAKDFMKRY-------GIPTAEYEVFT-DPEEALSYI--QEKGAPAIVVK 146 (423)
T ss_pred HHHHHHHHHC-CCeEECCCHHHHHHHCCHHHHHHHHHHC-------CCCCCCeEEEC-CHHHHHHHH--HhcCCCeEEEE
Confidence 3444555553 46655 6788999999999999999986 89999999885 322333333 357899 9999
Q ss_pred eCcCCCCccceeeEEEeChhhHhcc------------CCCeEEEecccCCCeEEEEEEE--CCEEEEE--EEecCCCCcc
Q 024006 103 PLVADGSAKSHELSLAYDQYSLKKL------------EPPLVLQEFVNHGGVLFKVYIV--GEAIKVV--RRFSLPDVTK 166 (274)
Q Consensus 103 p~~a~Gs~~sh~m~iv~~~~~l~~l------------~~p~vvQefI~h~g~~~KV~VI--G~~v~~~--~R~S~p~~~~ 166 (274)
|..++ +|.++.++.+.+++... ..++++||||+ |..+-|.++ |+.+... .|.--..+.
T Consensus 147 p~~~~---gg~Gv~~v~~~~el~~~~~~~~~~~~g~~~~~~lvEe~i~--G~E~sv~~~~dg~~~~~~~~~~~~~~~~~- 220 (423)
T TIGR00877 147 ADGLA---AGKGVIVAKTNEEAIKAVEEILEQKFGDAGERVVIEEFLD--GEEVSLLAFVDGKTVIPMPPAQDHKRALE- 220 (423)
T ss_pred ECCCC---CCCCEEEECCHHHHHHHHHHHHHHhcCCCCCeEEEEECcc--CceEEEEEEEcCCeEEeceeeeeeeeccc-
Confidence 97754 45789999999887541 24799999995 788888777 4433321 111000000
Q ss_pred cccccCCceeeecCcccccccCCcCCCCccccCCCC---hHHHHHHHHHHHHHh---CC---ceeEEeEEEeCCCCCeEE
Q 024006 167 QDLSTSAGVFRFPRVSCAAASADDADLDPCVAELPP---RPLLERLAKELRRQL---GL---RLFNLDIIREHGTRDQFY 237 (274)
Q Consensus 167 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~lA~~~~~~l---Gl---~l~G~Dvi~~~~~g~~~~ 237 (274)
. ..+. +. ++ ...+.|.. .++. .+..++++..+.++| |+ -++.+|+++++ +| ++
T Consensus 221 ~----~~~~---~~---g~----~~~~~p~~-~~~~~~~~~~~~~i~~~~~~aL~~~~~~~~G~~~ie~~~t~-~g--~~ 282 (423)
T TIGR00877 221 G----DKGP---NT---GG----MGAYSPAP-VFTEEVEKRIAEEIVEPTVKGMRKEGTPYKGVLYAGLMLTK-EG--PK 282 (423)
T ss_pred C----CCCC---CC---CC----CceecCCC-CCCHHHHHHHHHHHHHHHHHHHHHhCCCcEeEEEEEEEEEC-CC--cE
Confidence 0 0000 00 00 00011100 1111 122345666666666 33 35669999975 34 79
Q ss_pred EEeccCCCCCC
Q 024006 238 VIDINYFPGYG 248 (274)
Q Consensus 238 ViDVN~fPg~~ 248 (274)
++|+|.-||-.
T Consensus 283 viEin~R~g~~ 293 (423)
T TIGR00877 283 VLEFNCRFGDP 293 (423)
T ss_pred EEEEEccCCCc
Confidence 99999999844
No 62
>PRK13789 phosphoribosylamine--glycine ligase; Provisional
Probab=99.29 E-value=2.9e-10 Score=109.91 Aligned_cols=209 Identities=14% Similarity=0.183 Sum_probs=121.0
Q ss_pred HHHHHHHHhCCCcEEeCcH-HHHHHhcCHHHHHHHHHhccccCCCCCccCCCEEEEecCCCChhHHHHhcCCCCcEEEee
Q 024006 25 QILEEYRQTHPEVTVLDPP-YAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKP 103 (274)
Q Consensus 25 ~~l~~y~~~~P~v~Vidp~-~ai~~l~dR~~~~~~L~~~~~~~~~~~I~~P~~~~~~~~~~~~~~~l~~~~l~~P~VvKp 103 (274)
+.+.+..++ -+++++-|. .+.+...||..+-+.|.++ |||+|++..+. +.+++.+.+ ..++||+|+||
T Consensus 82 ~glad~~~~-~Gip~~Gp~~~aa~le~dK~~~K~~l~~~-------gIpt~~~~~~~-~~~ea~~~~--~~~~~PvVVKp 150 (426)
T PRK13789 82 AGFADWAAE-LGIPCFGPDSYCAQVEGSKHFAKSLMKEA-------KIPTASYKTFT-EYSSSLSYL--ESEMLPIVIKA 150 (426)
T ss_pred HHHHHHHHH-cCCCcCCCHHHHHHHHcCHHHHHHHHHHc-------CCCCCCeEeeC-CHHHHHHHH--HhcCCCEEEEe
Confidence 334444443 256666554 4667788999999999986 89999998885 333333333 24789999999
Q ss_pred CcCCCCccceeeEEEeChhhHhcc-------------CCCeEEEecccCCCeEEEEEEECCE--EEEEEEecCCCCcccc
Q 024006 104 LVADGSAKSHELSLAYDQYSLKKL-------------EPPLVLQEFVNHGGVLFKVYIVGEA--IKVVRRFSLPDVTKQD 168 (274)
Q Consensus 104 ~~a~Gs~~sh~m~iv~~~~~l~~l-------------~~p~vvQefI~h~g~~~KV~VIG~~--v~~~~R~S~p~~~~~~ 168 (274)
..++ .|.+|.++.+.+++.+. +..+++|||| .|.++-|.++.+. ++. +|-.. +
T Consensus 151 ~~~~---~gkGV~vv~~~eel~~a~~~~~~~~~~g~~~~~vlIEEfl--~G~E~Sv~~~~dg~~~~~-----lp~~~--d 218 (426)
T PRK13789 151 DGLA---AGKGVTVATEKKMAKRALKEIFKDKKFGQSGNQVVIEEFM--EGQEASIFAISDGDSYFL-----LPAAQ--D 218 (426)
T ss_pred CCCC---CCCcEEEECCHHHHHHHHHHHHhhccccCCCCeEEEEECc--CCeEEEEEEEECCCEEEE-----ccceE--e
Confidence 8542 47899999999877541 1269999999 5899999888543 321 22100 0
Q ss_pred cccCCceeeecCcccc---cccCCcCC-CCccccCCCChHHH-HHHHHHHHHH---hCCce---eEEeEEEeCCCCCeEE
Q 024006 169 LSTSAGVFRFPRVSCA---AASADDAD-LDPCVAELPPRPLL-ERLAKELRRQ---LGLRL---FNLDIIREHGTRDQFY 237 (274)
Q Consensus 169 ~~~~~g~~~~~~~~~~---~~~~~~~~-~~~~~~~~~~~~~~-~~lA~~~~~~---lGl~l---~G~Dvi~~~~~g~~~~ 237 (274)
....|+.+..... ++.. +.. ++++. .+++ ++++..+.++ +|+.+ +.+|++++. +| +++
T Consensus 219 ---~k~~~d~d~g~~tggmg~~~-P~p~~~~~~-----~~~i~~~i~~~~~~~l~~~g~~~~Gvl~~e~~it~-~g-~~~ 287 (426)
T PRK13789 219 ---HKRAFDGDQGPNTGGMGAYC-PAPVITEAI-----LQKVKERIFDPMFDDFRKKGHPYRGLLYAGLMISP-EG-EPK 287 (426)
T ss_pred ---cccccCCCCCCCCCCceEEe-eCCCCCHHH-----HHHHHHHHHHHHHHHHHHhCCCceEEEEEEEEEcC-CC-CEE
Confidence 0011111111100 0000 000 11111 1223 2355555544 46554 558999975 34 589
Q ss_pred EEeccCCCCCCCc----ccchHHHHHHHHHHHHh
Q 024006 238 VIDINYFPGYGKM----PEYEHIFTDFLLSLTQS 267 (274)
Q Consensus 238 ViDVN~fPg~~g~----~~~~~~l~~~l~~~~~~ 267 (274)
|+|+|.-||-..- +.....|.+.+...+..
T Consensus 288 vlE~n~R~Gdpe~~~ll~~l~~dl~~~~~~~~~g 321 (426)
T PRK13789 288 VVEFNCRFGDPETQCVLAMLDGDLLELLYAASTG 321 (426)
T ss_pred EEEEecCCCCcHhhhhhccCCCCHHHHHHHHHcC
Confidence 9999999995222 22234455566555554
No 63
>PRK12999 pyruvate carboxylase; Reviewed
Probab=99.29 E-value=8.2e-11 Score=125.31 Aligned_cols=175 Identities=15% Similarity=0.206 Sum_probs=117.2
Q ss_pred CcEE-eCcHHHHHHhcCHHHHHHHHHhccccCCCCCccCCCEEE--EecCCCChhHHHHhcCCCCcEEEeeCcCCCCccc
Q 024006 36 EVTV-LDPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLV--IERDASSIPDVVLKAGLTLPLVAKPLVADGSAKS 112 (274)
Q Consensus 36 ~v~V-idp~~ai~~l~dR~~~~~~L~~~~~~~~~~~I~~P~~~~--~~~~~~~~~~~l~~~~l~~P~VvKp~~a~Gs~~s 112 (274)
++.+ -.++++++.+.||..+.+.+.++ ||++|++.. +. +.+++.+.. ..++||+|+||..|+ +|
T Consensus 103 Gi~fiGps~eai~~~~DK~~~r~~l~~~-------GVPv~P~~~~~v~-s~eea~~~a--~~iGyPvVVKP~~Gg---GG 169 (1146)
T PRK12999 103 GITFIGPTAEVLRLLGDKVAARNAAIKA-------GVPVIPGSEGPID-DIEEALEFA--EEIGYPIMLKASAGG---GG 169 (1146)
T ss_pred CCcccCCCHHHHHHhCCHHHHHHHHHHC-------CCCCCCCcccCCC-CHHHHHHHH--HHhCCCEEEEECCCC---CC
Confidence 4554 46789999999999999999886 899876553 33 322333322 358999999999865 46
Q ss_pred eeeEEEeChhhHhcc-------------CCCeEEEecccCCCeEEEEEEECCE---EEEE-EEe-cCCCCcccccccCCc
Q 024006 113 HELSLAYDQYSLKKL-------------EPPLVLQEFVNHGGVLFKVYIVGEA---IKVV-RRF-SLPDVTKQDLSTSAG 174 (274)
Q Consensus 113 h~m~iv~~~~~l~~l-------------~~p~vvQefI~h~g~~~KV~VIG~~---v~~~-~R~-S~p~~~~~~~~~~~g 174 (274)
++|.++.++++|... +.++++|+||+ +++.+.|-++||. ++.. .|- |.. ..
T Consensus 170 rGv~vV~~~eEL~~a~~~a~~ea~~~fg~~~vlVEefI~-g~~~ieVqvl~D~~G~vv~l~erdcsvq--------rr-- 238 (1146)
T PRK12999 170 RGMRIVRSEEELEEAFERAKREAKAAFGNDEVYLEKYVE-NPRHIEVQILGDKHGNVVHLYERDCSVQ--------RR-- 238 (1146)
T ss_pred CCeEEeCCHHHHHHHHHHHHHHHHhhcCCCcEEEecCCC-CCeEEEEEEEEECCCCEEEEEcccccee--------ec--
Confidence 899999999988542 35799999997 4577888888753 3222 221 110 00
Q ss_pred eeeecCcccccccCCcCCCCccccCCCChHHHHHHHHHHHHHhCCceeE-EeEEEeCCCCCeEEEEeccCCCCC
Q 024006 175 VFRFPRVSCAAASADDADLDPCVAELPPRPLLERLAKELRRQLGLRLFN-LDIIREHGTRDQFYVIDINYFPGY 247 (274)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lA~~~~~~lGl~l~G-~Dvi~~~~~g~~~~ViDVN~fPg~ 247 (274)
+.... ..+....++++. .+++.++|.++.+++|+.-+| +|++++.+ | ++|++|||.-++.
T Consensus 239 ----~qk~i--e~aP~~~L~~~~-----~~~l~~~A~kl~~algy~G~gtVEflvd~d-g-~~yfIEINpRlqv 299 (1146)
T PRK12999 239 ----HQKVV--EIAPAPGLSEEL-----RERICEAAVKLARAVGYVNAGTVEFLVDAD-G-NFYFIEVNPRIQV 299 (1146)
T ss_pred ----CccEE--EEcCCCCCCHHH-----HHHHHHHHHHHHHHcCCCceEEEEEEEECC-C-CEEEEEEECCCCC
Confidence 00000 000000122211 356889999999999998766 99999853 4 5899999988864
No 64
>PF15632 ATPgrasp_Ter: ATP-grasp in the biosynthetic pathway with Ter operon
Probab=99.28 E-value=4.3e-10 Score=105.04 Aligned_cols=169 Identities=21% Similarity=0.327 Sum_probs=120.6
Q ss_pred HHHHHHHhCCCcEEe--CcHHHHHHhcCHHHHHHHHHhccccCCCCCccCCCEEEEecCCCChhHHHHhcCCCCc---EE
Q 024006 26 ILEEYRQTHPEVTVL--DPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLP---LV 100 (274)
Q Consensus 26 ~l~~y~~~~P~v~Vi--dp~~ai~~l~dR~~~~~~L~~~~~~~~~~~I~~P~~~~~~~~~~~~~~~l~~~~l~~P---~V 100 (274)
.-++|.+. |+.++ -+.+++..+.||.++++.+++. +|++|++..++ +.+++..+. +.+++| +.
T Consensus 82 ~r~~F~a~--Gv~l~~~~~~~~l~~~~dK~~~y~~~~~~-------~ipvp~~~~v~-t~~el~~a~--~~l~~~~~~~C 149 (329)
T PF15632_consen 82 HRDEFEAL--GVKLLTASSAETLELADDKAAFYEFMEAN-------GIPVPPYWRVR-TADELKAAY--EELRFPGQPLC 149 (329)
T ss_pred HHHHHHHh--CCEEEecCCHHHHHHHhhHHHHHHHHHhC-------CCCCCCEEEeC-CHHHHHHHH--HhcCCCCceEE
Confidence 33444444 55444 4589999999999999999985 89999999995 433444433 345555 99
Q ss_pred EeeCcCCCCccceeeEEEe-ChhhHhcc----------------------CCCeEEEecccCCCeEEEEEEE--CCEEE-
Q 024006 101 AKPLVADGSAKSHELSLAY-DQYSLKKL----------------------EPPLVLQEFVNHGGVLFKVYIV--GEAIK- 154 (274)
Q Consensus 101 vKp~~a~Gs~~sh~m~iv~-~~~~l~~l----------------------~~p~vvQefI~h~g~~~KV~VI--G~~v~- 154 (274)
+||..|. ++.|..++. +.+.++.+ -.|++++||+ +|.+|.|=|+ ++++.
T Consensus 150 vKP~~g~---gg~GFr~l~~~~~~l~~l~~~~~~~i~~~~~~~~l~~~~~~~~llvMeyL--~G~EySVD~l~~~G~via 224 (329)
T PF15632_consen 150 VKPAVGI---GGRGFRVLDESRDELDALFEPDSRRISLDELLAALQRSEEFPPLLVMEYL--PGPEYSVDCLADEGRVIA 224 (329)
T ss_pred EecccCC---CcceEEEEccCcchHHHhcCCCcceeCHHHHHHHHhccCCCCCcEEecCC--CCCeEEEEEEecCCEEEE
Confidence 9999975 456888888 44444322 3579999999 5888888777 44565
Q ss_pred EEEEecCCCCcccccccCCceeeecCcccccccCCcCCCCccccCCCChHHHHHHHHHHHHHhCCc-eeEEeEEEeCCCC
Q 024006 155 VVRRFSLPDVTKQDLSTSAGVFRFPRVSCAAASADDADLDPCVAELPPRPLLERLAKELRRQLGLR-LFNLDIIREHGTR 233 (274)
Q Consensus 155 ~~~R~S~p~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lA~~~~~~lGl~-l~G~Dvi~~~~~g 233 (274)
++-|+.. .. . . . +...+.+.++|.++++.+||+ +++|++-.|. +|
T Consensus 225 aV~R~K~-G~-~---------------q---------~-------l~~~~~l~e~a~~l~~~~~l~g~~NiQ~r~d~-~g 270 (329)
T PF15632_consen 225 AVPRRKL-GR-R---------------Q---------V-------LENDEELIELARRLAEAFGLDGLFNIQFRYDE-DG 270 (329)
T ss_pred EEEEEec-Cc-e---------------e---------E-------EEECHHHHHHHHHHHHHhCCCceEEEEEEEcC-CC
Confidence 4566643 10 0 0 0 001356899999999999999 7899999975 45
Q ss_pred CeEEEEeccCCCC
Q 024006 234 DQFYVIDINYFPG 246 (274)
Q Consensus 234 ~~~~ViDVN~fPg 246 (274)
.++++|||.=|+
T Consensus 271 -~p~LLEINpR~s 282 (329)
T PF15632_consen 271 -NPKLLEINPRPS 282 (329)
T ss_pred -CEEEEEeCCCCc
Confidence 589999999886
No 65
>COG0439 AccC Biotin carboxylase [Lipid metabolism]
Probab=99.27 E-value=9.3e-11 Score=113.42 Aligned_cols=184 Identities=16% Similarity=0.224 Sum_probs=120.3
Q ss_pred HHHHHHHhCCCcEEeCc-HHHHHHhcCHHHHHHHHHhccccCCCCCccCCCEEEEe-cCCCChhHHHHhcCCCCcEEEee
Q 024006 26 ILEEYRQTHPEVTVLDP-PYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIE-RDASSIPDVVLKAGLTLPLVAKP 103 (274)
Q Consensus 26 ~l~~y~~~~P~v~Vidp-~~ai~~l~dR~~~~~~L~~~~~~~~~~~I~~P~~~~~~-~~~~~~~~~l~~~~l~~P~VvKp 103 (274)
.+.+-.++ .++.++-| +++++.+.||.+|-+.+.+. |+|+|+...-. .+.++..+.. ..++||+|+||
T Consensus 90 ~fae~~~~-~gl~fiGP~~~~i~~mgdK~~ar~~~~~a-------GVP~vpgs~~~~~~~ee~~~~a--~~iGyPVivKa 159 (449)
T COG0439 90 AFAEACAE-AGLTFIGPSAEAIRRMGDKITARRLMAKA-------GVPVVPGSDGAVADNEEALAIA--EEIGYPVIVKA 159 (449)
T ss_pred HHHHHHHH-cCCeeeCcCHHHHHHhhhHHHHHHHHHHc-------CCCcCCCCCCCcCCHHHHHHHH--HHcCCCEEEEE
Confidence 44455555 34777776 46778888999999999886 88888876210 1112233333 34669999999
Q ss_pred CcCCCCccceeeEEEeChhhHhcc------------CCC-eEEEecccCCCeEEEEEEECCEE---EE-EEEe-cCCCCc
Q 024006 104 LVADGSAKSHELSLAYDQYSLKKL------------EPP-LVLQEFVNHGGVLFKVYIVGEAI---KV-VRRF-SLPDVT 165 (274)
Q Consensus 104 ~~a~Gs~~sh~m~iv~~~~~l~~l------------~~p-~vvQefI~h~g~~~KV~VIG~~v---~~-~~R~-S~p~~~ 165 (274)
..|+ +|.||.++.+.++|.+. ..| +++|+||+. .+-+=+-|+||.. +. ..|- |+.-.
T Consensus 160 ~~Gg---Gg~G~r~v~~~~el~~a~~~~~~ea~~~fg~~~v~iEk~i~~-~rhievqv~gD~~g~~i~l~eRdcsiqrr- 234 (449)
T COG0439 160 AAGG---GGRGMRVVRNEEELEAAFEAARGEAEAAFGNPRVYLEKFIEG-PRHIEVQVLGDGHGNVIHLGERDCSIQRR- 234 (449)
T ss_pred CCCC---CcccEEEECCHHHHHHHHHHHHHHHHHhcCCCcEEeeeeccC-CceEEEEEEEcCcccEEEEEeccCCCcCC-
Confidence 8865 46799999999998652 344 999999984 5556788898874 22 2444 33210
Q ss_pred ccccccCCceeeecCcccccccCCcCCCCccccCCCChHHHHHHHHHHHHHhCCceeE-EeEEEeCCCCCeEEEEeccCC
Q 024006 166 KQDLSTSAGVFRFPRVSCAAASADDADLDPCVAELPPRPLLERLAKELRRQLGLRLFN-LDIIREHGTRDQFYVIDINYF 244 (274)
Q Consensus 166 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lA~~~~~~lGl~l~G-~Dvi~~~~~g~~~~ViDVN~f 244 (274)
. ..+ ...+....++++. .+.+.+.|.++.+.+|..-+| +.++.+. +| ++|++|+|.=
T Consensus 235 -------~-----qkv---ieeapsp~~~~e~-----r~~i~~~a~~a~~~~gY~gagtvEfl~~~-~~-~~yfiEmN~R 292 (449)
T COG0439 235 -------H-----QKV---IEEAPSPLLTEEL-----REKIGEAAVRAAKLIGYRGAGTVEFLYDS-NG-EFYFIEMNTR 292 (449)
T ss_pred -------c-----cce---eeecCCCCCCHHH-----HHHHHHHHHHHHHhcCCCCCceEEEEEeC-CC-CEEEEEEecc
Confidence 0 000 0000001111111 345778889999999999998 9999986 45 5899999975
Q ss_pred CC
Q 024006 245 PG 246 (274)
Q Consensus 245 Pg 246 (274)
=+
T Consensus 293 lq 294 (449)
T COG0439 293 LQ 294 (449)
T ss_pred cc
Confidence 54
No 66
>PRK12815 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=99.27 E-value=1.3e-10 Score=123.51 Aligned_cols=182 Identities=16% Similarity=0.266 Sum_probs=118.7
Q ss_pred CcEEe-CcHHHHHHhcCHHHHHHHHHhccccCCCCCccCCCEEEEecCCCChhHHHHhcCCCCcEEEeeCcCCCCcccee
Q 024006 36 EVTVL-DPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHE 114 (274)
Q Consensus 36 ~v~Vi-dp~~ai~~l~dR~~~~~~L~~~~~~~~~~~I~~P~~~~~~~~~~~~~~~l~~~~l~~P~VvKp~~a~Gs~~sh~ 114 (274)
++.++ -++++++.+.||..+-+.|.++ ||++|++..+.+ .+++.+.. ..++||+|+||..+. ++.+
T Consensus 112 gv~l~g~~~~~i~~~~DK~~~k~~l~~~-------GIpvp~~~~v~s-~ee~~~~~--~~igyPvVVKP~~g~---gG~G 178 (1068)
T PRK12815 112 GVELLGTNIEAIQKGEDRERFRALMKEL-------GEPVPESEIVTS-VEEALAFA--EKIGFPIIVRPAYTL---GGTG 178 (1068)
T ss_pred CCEEECCCHHHHHHhcCHHHHHHHHHHc-------CcCCCCceeeCC-HHHHHHHH--HHcCCCEEEEECcCC---CCCc
Confidence 56665 6789999999999999999986 899999998853 22333322 357899999999754 4567
Q ss_pred eEEEeChhhHhcc---------CCCeEEEecccCCC-eEEEEEEECCE---EEEEEEecCCCCcccccccCCceeeecCc
Q 024006 115 LSLAYDQYSLKKL---------EPPLVLQEFVNHGG-VLFKVYIVGEA---IKVVRRFSLPDVTKQDLSTSAGVFRFPRV 181 (274)
Q Consensus 115 m~iv~~~~~l~~l---------~~p~vvQefI~h~g-~~~KV~VIG~~---v~~~~R~S~p~~~~~~~~~~~g~~~~~~~ 181 (274)
+.++.++++|.+. ..++++||||+ | +++-|-|+.|. +.... +.-++....+.+ | ++.
T Consensus 179 v~iv~~~eEL~~a~~~~~~~s~~~~vLVEe~I~--G~~E~sv~v~rD~~g~~~~~~--~~e~~~p~gi~t--G----~s~ 248 (1068)
T PRK12815 179 GGIAENLEELEQLFKQGLQASPIHQCLLEESIA--GWKEIEYEVMRDRNGNCITVC--NMENIDPVGIHT--G----DSI 248 (1068)
T ss_pred eEEECCHHHHHHHHHHHHhcCCCCeEEEEEccC--CCeEEEEEEEEcCCCCEEEEE--eceecccccccC--C----ceE
Confidence 8899999988652 24799999995 5 68888888653 32211 111111110000 0 000
Q ss_pred ccccccCCcCCCCccccCCCChHHHHHHHHHHHHHhCCc-eeEEeEEEeCCCCCeEEEEeccCCCCCCCccc
Q 024006 182 SCAAASADDADLDPCVAELPPRPLLERLAKELRRQLGLR-LFNLDIIREHGTRDQFYVIDINYFPGYGKMPE 252 (274)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lA~~~~~~lGl~-l~G~Dvi~~~~~g~~~~ViDVN~fPg~~g~~~ 252 (274)
.. .....+++. ..++++++|.++.++||+. .+.+|+.++.++| +++|+||| |.+.+...
T Consensus 249 ~v----~Pa~~l~~~-----~~~~l~~~a~ki~~~Lg~~G~~~vef~l~~~~g-~~~ViEIN--PR~~~s~~ 308 (1068)
T PRK12815 249 VV----APSQTLTDD-----EYQMLRSASLKIISALGVVGGCNIQFALDPKSK-QYYLIEVN--PRVSRSSA 308 (1068)
T ss_pred EE----ecCCCCCHH-----HHHHHHHHHHHHHHHcCCCCceEEEEEEECCCC-cEEEEEEe--cCcccchh
Confidence 00 000011111 1346899999999999996 5569999986444 69999999 44444433
No 67
>TIGR02712 urea_carbox urea carboxylase. Members of this family are ATP-dependent urea carboxylase, including characterized members from Oleomonas sagaranensis (alpha class Proteobacterium) and yeasts such as Saccharomyces cerevisiae. The allophanate hydrolase domain of the yeast enzyme is not included in this model and is represented by an adjacent gene in Oleomonas sagaranensis. The fusion of urea carboxylase and allophanate hydrolase is designated urea amidolyase. The enzyme from Oleomonas sagaranensis was shown to be highly active on acetamide and formamide as well as urea.
Probab=99.23 E-value=3.6e-10 Score=121.06 Aligned_cols=177 Identities=15% Similarity=0.203 Sum_probs=117.9
Q ss_pred CcEE-eCcHHHHHHhcCHHHHHHHHHhccccCCCCCccCCC-EEEEecCCCChhHHHHhcCCCCcEEEeeCcCCCCccce
Q 024006 36 EVTV-LDPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPR-QLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSH 113 (274)
Q Consensus 36 ~v~V-idp~~ai~~l~dR~~~~~~L~~~~~~~~~~~I~~P~-~~~~~~~~~~~~~~l~~~~l~~P~VvKp~~a~Gs~~sh 113 (274)
++.+ -.++++++.+.||..+-+.+.++ ||++|+ +.+++ +.+++.+. ...++||+|+||..++ +|.
T Consensus 98 Gi~~iGps~ea~~~~~DK~~ar~ll~~~-------GVPt~p~~~lv~-s~dea~~~--a~~igyPvVVKP~~gg---GG~ 164 (1201)
T TIGR02712 98 GIVFVGPTPEQIRKFGLKHTARELAEAA-------GVPLLPGTGLLS-SLDEALEA--AKEIGYPVMLKSTAGG---GGI 164 (1201)
T ss_pred CCcEECCCHHHHHHhcCHHHHHHHHHHC-------CCCCCCceeecC-CHHHHHHH--HHhcCCeEEEEECCCC---CCC
Confidence 4544 46689999999999999999886 899855 54554 32233332 2457999999998864 467
Q ss_pred eeEEEeChhhHhcc-------------CCCeEEEecccCCCeEEEEEEECC---EEEEE-EEe-cCCCCcccccccCCce
Q 024006 114 ELSLAYDQYSLKKL-------------EPPLVLQEFVNHGGVLFKVYIVGE---AIKVV-RRF-SLPDVTKQDLSTSAGV 175 (274)
Q Consensus 114 ~m~iv~~~~~l~~l-------------~~p~vvQefI~h~g~~~KV~VIG~---~v~~~-~R~-S~p~~~~~~~~~~~g~ 175 (274)
+|.++.++++|... +.++++||||+ +|+.+-|.+++| ++.+. .|- +.. ... .
T Consensus 165 GV~iv~~~eEL~~a~~~~~~~~~~~f~~~~vlVEefI~-g~~eveV~v~~Dg~g~vv~lg~rd~s~q--------r~~-~ 234 (1201)
T TIGR02712 165 GMQKCDSAAELAEAFETVKRLGESFFGDAGVFLERFVE-NARHVEVQIFGDGKGKVVALGERDCSLQ--------RRN-Q 234 (1201)
T ss_pred CEEEECCHHHHHHHHHHHHHHHHHhcCCCcEEEEecCC-CCEEEEEEEEECCCCeEEEeeEEEeeeE--------ecC-c
Confidence 99999999988631 34699999997 478899988875 33332 221 110 000 0
Q ss_pred eeecCcccccccCCcCCCCccccCCCChHHHHHHHHHHHHHhCCceeE-EeEEEeCCCCCeEEEEeccCCCCCC
Q 024006 176 FRFPRVSCAAASADDADLDPCVAELPPRPLLERLAKELRRQLGLRLFN-LDIIREHGTRDQFYVIDINYFPGYG 248 (274)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lA~~~~~~lGl~l~G-~Dvi~~~~~g~~~~ViDVN~fPg~~ 248 (274)
. .+.. .....++++ ..+++.++|.++.++||+.-++ +|++++.++| ++||+|||.=++-.
T Consensus 235 k---~vee----~Pap~l~~~-----~~~~l~~~a~~l~~aLgy~G~~~VEfild~~~g-~~y~lEVNpRlq~~ 295 (1201)
T TIGR02712 235 K---VVEE----TPAPNLPPE-----TRQALLAAAERLGEAVNYRSAGTVEFIYDEARD-EFYFLEVNTRLQVE 295 (1201)
T ss_pred c---EEEE----cCCCCCCHH-----HHHHHHHHHHHHHHhcCccceEEEEEEEECCCC-CEEEEEEECCcCcc
Confidence 0 0000 000011111 1357889999999999998555 9999986444 68999999988643
No 68
>PF02786 CPSase_L_D2: Carbamoyl-phosphate synthase L chain, ATP binding domain; InterPro: IPR005479 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the ATP-binding domain found in the large subunit of carbamoyl phosphate synthase, as well as in related proteins.; GO: 0003824 catalytic activity, 0005524 ATP binding, 0008152 metabolic process; PDB: 3U9S_A 3U9T_A 2C00_B 2VQD_A 1W96_B 1W93_A 1M6V_C 1CS0_C 1C30_E 1C3O_G ....
Probab=99.20 E-value=2e-10 Score=101.10 Aligned_cols=161 Identities=16% Similarity=0.275 Sum_probs=101.2
Q ss_pred CHHHHHHHHHhccccCCCCCccCCCEEEE-ecCCCChhHHHHhcCCCCcEEEeeCcCCCCccceeeEEEeChhhHhcc--
Q 024006 51 NRQSMLQCVADMNLSNSYGKVDVPRQLVI-ERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKKL-- 127 (274)
Q Consensus 51 dR~~~~~~L~~~~~~~~~~~I~~P~~~~~-~~~~~~~~~~l~~~~l~~P~VvKp~~a~Gs~~sh~m~iv~~~~~l~~l-- 127 (274)
||.+..+.+.++ ++|+|+.... -.+.++..+.. ..++||+++||..|+ ++.+|.+++++++|.+.
T Consensus 1 Dk~~~~~~~~~~-------gvp~~pg~~~~~~~~eea~~~a--~~iGyPVliKas~gg---GG~gm~iv~~~~eL~~~~~ 68 (211)
T PF02786_consen 1 DKIRFRKLAKKL-------GVPVPPGSTVPISSVEEALEFA--EEIGYPVLIKASAGG---GGRGMRIVHNEEELEEAFE 68 (211)
T ss_dssp SHHHHHHHHHHT-------T-BBSSBESSSBSSHHHHHHHH--HHH-SSEEEEETTSS---TTTSEEEESSHHHHHHHHH
T ss_pred CHHHHHHHHHHC-------CCCcCCCCCCCCCCHHHHHHHH--HhcCCceEEeecccc---cccccccccchhhhhhhhh
Confidence 788888888886 8888887655 11222233322 347999999998864 47799999999998652
Q ss_pred -----------CCCeEEEecccCCCeEEEEEEECCE---EEE-EEEe-cCCCCcccccccCCceeeecCcccccccCCcC
Q 024006 128 -----------EPPLVLQEFVNHGGVLFKVYIVGEA---IKV-VRRF-SLPDVTKQDLSTSAGVFRFPRVSCAAASADDA 191 (274)
Q Consensus 128 -----------~~p~vvQefI~h~g~~~KV~VIG~~---v~~-~~R~-S~p~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 191 (274)
+.++++++|+. +.+.+-|=||+|. +.+ ..|- +.+- +.++ .+. .+...
T Consensus 69 ~~~~~s~~~fg~~~v~iek~i~-~~reiEvqvi~D~~gn~~~~~~~e~~~~~-hs~d-----------si~----~~P~~ 131 (211)
T PF02786_consen 69 RAQRESPAAFGDGPVLIEKFIE-GAREIEVQVIRDGKGNVVHLGERECSEQR-HSQD-----------SIE----EAPAQ 131 (211)
T ss_dssp HHHHHHHHHHSTS-EEEEE--S-SEEEEEEEEEEETTSEEEEEEEEEEEEEE-TTEE-----------EEE----EES-S
T ss_pred hccccCccccccceEEEeeehh-hhhhhhhhhhhccccceeeeeeecccccc-cccc-----------cee----Eeecc
Confidence 67999999996 4578888888763 332 3443 2211 1110 000 00111
Q ss_pred CCCccccCCCChHHHHHHHHHHHHHhCCceeE-EeEEEeCCCCCeEEEEeccCCCC
Q 024006 192 DLDPCVAELPPRPLLERLAKELRRQLGLRLFN-LDIIREHGTRDQFYVIDINYFPG 246 (274)
Q Consensus 192 ~~~~~~~~~~~~~~~~~lA~~~~~~lGl~l~G-~Dvi~~~~~g~~~~ViDVN~fPg 246 (274)
.++++. .+.+++.|.++++++|+.=.| |-++++..++ ++||+|+|..-+
T Consensus 132 ~L~~~~-----~~~l~~~a~~ia~~l~~~G~~tvef~~~~~~~-~~y~lEvNpR~~ 181 (211)
T PF02786_consen 132 TLSDEE-----RQKLREAAKKIARALGYVGAGTVEFAVDPDDG-EFYFLEVNPRLQ 181 (211)
T ss_dssp SS-HHH-----HHHHHHHHHHHHHHTT-EEEEEEEEEEETTTT-EEEEEEEESS--
T ss_pred ccchHH-----HHHHHHHHHHHHHhhCeeecceEEEEEccCcc-ceeeecccCCCC
Confidence 222221 357889999999999999666 9999996445 899999998765
No 69
>PF02750 Synapsin_C: Synapsin, ATP binding domain; InterPro: IPR020898 The synapsins are a family of neuron-specific phosphoproteins that coat synaptic vesicles and are involved in the binding between these vesicles and the cytoskeleton (including actin filaments). The family comprises 5 homologous proteins Ia, Ib, IIa, IIb and III. Synapsins I, II, and III are encoded by 3 different genes. The a and b isoforms of synapsin I and II are splice variants of the primary transcripts []. Synapsin I is mainly associated with regulation of neurotransmitter release from presynaptic neuron terminals []. Synapsin II, as well as being involved in neurotransmitter release, has a role in the synaptogenesis and synaptic plasticity responsible for long term potentiation []. Recent studies implicate synapsin III with a developmental role in neurite elongation and synapse formation that is distinct from the functions of synapsins I and II []. Structurally, synapsins are multidomain proteins, of which 3 domains are common to all the mammalian forms. The N-terminal `A' domain is ~30 residues long and contains a serine residue that serves as an acceptor site for protein kinase-mediated phosphorylation. This is followed by the `B' linker domain, which is ~80 residues long and is relatively poorly conserved. Domain `C' is the longest, spanning approximately 300 residues. This domain is highly conserved across all the synapsins (including those from Drosophila) and is possessed by all splice variants. The remaining six domains, D-I, are not shared by all the synapsins and differ both between the primary transcripts and the splice variants. This entry represent the ATP-grasp fold found in synapsins, which is responsible for Ca dependent ATP binding. ; PDB: 1PX2_A 1PK8_F 1AUV_B 1AUX_A 2P0A_A 1I7N_A 1I7L_A.
Probab=99.19 E-value=5.9e-10 Score=95.84 Aligned_cols=165 Identities=14% Similarity=0.198 Sum_probs=99.8
Q ss_pred CcHHHHHHhcCHH----HHHHHHHhccccCCCCCccCCCEEEEecCCCChhHHHHhcCCCCcEEEeeCcCCCCccceeeE
Q 024006 41 DPPYAIQHLHNRQ----SMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELS 116 (274)
Q Consensus 41 dp~~ai~~l~dR~----~~~~~L~~~~~~~~~~~I~~P~~~~~~~~~~~~~~~l~~~~l~~P~VvKp~~a~Gs~~sh~m~ 116 (274)
|++.+++...||- .++++-.+++. ..+|.=.+.... +..++. ..-+||+|+|--.++ .+-|-.
T Consensus 1 NSL~Siynf~dKpWvF~qLi~i~~~lG~----e~FPLieQt~yp-nh~em~-----s~~~fPvVvKvG~~h---~G~GKv 67 (203)
T PF02750_consen 1 NSLHSIYNFCDKPWVFAQLIKIQKRLGP----EKFPLIEQTYYP-NHREML-----SAPRFPVVVKVGHAH---AGMGKV 67 (203)
T ss_dssp S-HHHHHHTTSHHHHHHHHHHHHHHHHT----TTS-B---EEES-SGGGGC-----S-SSSSEEEEESS-S---TTTTEE
T ss_pred CcccchhhhcCCcHHHHHHHHHHHHhCC----cccccceeeecC-Chhhhc-----cCCCCCEEEEEcccc---CceeEE
Confidence 7899999999994 23333233321 134322222221 111221 235899999954433 234556
Q ss_pred EEeChhhHhcc-------CCCeEEEecccCCCeEEEEEEECCEEEEEEEecCCCCcccccccCCceeeecCcccccccCC
Q 024006 117 LAYDQYSLKKL-------EPPLVLQEFVNHGGVLFKVYIVGEAIKVVRRFSLPDVTKQDLSTSAGVFRFPRVSCAAASAD 189 (274)
Q Consensus 117 iv~~~~~l~~l-------~~p~vvQefI~h~g~~~KV~VIG~~v~~~~R~S~p~~~~~~~~~~~g~~~~~~~~~~~~~~~ 189 (274)
.+.|...+.++ +.=+-++.||+ .-.|++|--||+.+.+.+|+|+.. .|+++.|.--+.
T Consensus 68 kv~n~~~~qDi~sll~~~~~Y~T~EPfId-~kyDirvqkIG~~ykA~~R~sis~----nWK~N~gsa~lE---------- 132 (203)
T PF02750_consen 68 KVDNQQDFQDIASLLAITKDYATTEPFID-AKYDIRVQKIGNNYKAYMRTSISG----NWKANTGSAMLE---------- 132 (203)
T ss_dssp EE-SHHHHHHHHHHHHHHTS-EEEEE----EEEEEEEEEETTEEEEEEEEESSS----TSSTTSSSEEEE----------
T ss_pred EEccHHHHHHHHHHHHhcCceEEeecccc-ceeEEEEEEEcCeEEEEEEccccc----cccccccchhee----------
Confidence 89999888764 55678899995 478999999999999999999742 466554321111
Q ss_pred cCCCCccccCCCChHHHHHHHHHHHHHh-CCceeEEeEEEeCCCCCeEEEEeccCC
Q 024006 190 DADLDPCVAELPPRPLLERLAKELRRQL-GLRLFNLDIIREHGTRDQFYVIDINYF 244 (274)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~lA~~~~~~l-Gl~l~G~Dvi~~~~~g~~~~ViDVN~f 244 (274)
..+.++..+.-..++++.+ ||+++++|.|... +| +.||+|||-.
T Consensus 133 ---------qi~~~~ryk~Wvd~~s~lfGGlDI~~v~ai~~k-dG-ke~Iievnds 177 (203)
T PF02750_consen 133 ---------QIAMTERYKLWVDECSELFGGLDICAVDAIHGK-DG-KEYIIEVNDS 177 (203)
T ss_dssp ---------EE---HHHHHHHHHHGGGGG--SEEEEEEEEET-TS--EEEEEEE-T
T ss_pred ---------ecCCChHHHHHHHHHHHHcCCccEEEEEEEEcC-CC-CEEEEEecCC
Confidence 1123456788889999999 9999999999986 67 5799999965
No 70
>PRK06395 phosphoribosylamine--glycine ligase; Provisional
Probab=99.17 E-value=3e-09 Score=103.13 Aligned_cols=201 Identities=12% Similarity=0.104 Sum_probs=117.9
Q ss_pred CcEEe-CcHHHHHHhcCHHHHHHHHHhccccCCCCCccCCCEE-EEecCCCChhHHHHhcCCCCcEEEeeCcCCCCccce
Q 024006 36 EVTVL-DPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQL-VIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSH 113 (274)
Q Consensus 36 ~v~Vi-dp~~ai~~l~dR~~~~~~L~~~~~~~~~~~I~~P~~~-~~~~~~~~~~~~l~~~~l~~P~VvKp~~a~Gs~~sh 113 (274)
+++++ .+.++++.+.||..|.+.|.++ +|++|++. ...+. ++..... ..++||+|+||..+. +|.
T Consensus 89 Gi~v~gps~~~a~~e~dK~~~k~~l~~~-------gIptp~~~~~~~~~-~e~~~~~--~~~~~PvVVKP~~~s---ggk 155 (435)
T PRK06395 89 GIKVASPTMEAAMIETSKMFMRYLMERH-------NIPGNINFNACFSE-KDAARDY--ITSMKDVAVKPIGLT---GGK 155 (435)
T ss_pred CCcEECCCHHHHHHhhCHHHHHHHHHHC-------CcCCCcccceeCCh-HHHHHHH--HhhCCCEEEEeCCCC---CCC
Confidence 67776 8899999999999999999986 89998554 44322 2222222 345899999997754 566
Q ss_pred eeEEEeCh----hh-Hh------ccCCCeEEEecccCCCeEEEEEEE--CCEEEEEEEecCCCCcccccc-cCCceeeec
Q 024006 114 ELSLAYDQ----YS-LK------KLEPPLVLQEFVNHGGVLFKVYIV--GEAIKVVRRFSLPDVTKQDLS-TSAGVFRFP 179 (274)
Q Consensus 114 ~m~iv~~~----~~-l~------~l~~p~vvQefI~h~g~~~KV~VI--G~~v~~~~R~S~p~~~~~~~~-~~~g~~~~~ 179 (274)
+|.++.+. ++ +. +...++++|||+ .|.+|-|.++ |+.++. +|-. .+.+ ..+|.+- +
T Consensus 156 GV~v~~~~~~~~~ea~~~~~~~~~~~~~viIEEfl--~G~E~Svd~~~dg~~~~~-----l~~~--~d~~r~~~~d~g-p 225 (435)
T PRK06395 156 GVKVTGEQLNSVDEAIRYAIEILDRDGVVLIEKKM--TGEEFSLQAFSDGKHLSF-----MPIV--QDYKRAYEGDHG-P 225 (435)
T ss_pred CeEEecCchhhHHHHHHHHHHHhCCCCcEEEEeec--CCceEEEEEEEcCCeEEE-----eccc--ceeeecccCCCC-C
Confidence 88888532 22 22 123579999999 4778877555 666532 1110 0000 0011000 0
Q ss_pred CcccccccCCc----CCCCccccCCCChHHHHHHHHHHHHHhCCc------eeEEeEEEeCCCCCeEEEEeccCCCCCCC
Q 024006 180 RVSCAAASADD----ADLDPCVAELPPRPLLERLAKELRRQLGLR------LFNLDIIREHGTRDQFYVIDINYFPGYGK 249 (274)
Q Consensus 180 ~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~lA~~~~~~lGl~------l~G~Dvi~~~~~g~~~~ViDVN~fPg~~g 249 (274)
+-.-.|+.++. ..++++. .+++++++.++.++|+.+ +..+++++++ +| ++|||+|.=+|=-.
T Consensus 226 ~tGgmG~~s~~~~~~p~l~~~~-----~~~i~~i~~~~~~~l~~~~~~~~G~l~~~~~lt~-~g--p~ViE~n~R~gdpe 297 (435)
T PRK06395 226 NTGGMGSISDRDFSLPFLSKDA-----PERAKHILNDIIRAMKDENNPFKGIMYGQFMDTP-NG--VKVIEINARFADPE 297 (435)
T ss_pred ccCCCccccCCCCCCCCCCHHH-----HHHHHHHHHHHHHHHHhcCCceEEEEEEEEEEeC-CC--cEEEEEeCCCCCcc
Confidence 00001111100 0011111 345688999999999953 3458999964 34 79999999888221
Q ss_pred ----cccchHHHHHHHHHHHHh
Q 024006 250 ----MPEYEHIFTDFLLSLTQS 267 (274)
Q Consensus 250 ----~~~~~~~l~~~l~~~~~~ 267 (274)
++.....|.+.+...+..
T Consensus 298 ~~~il~~l~~d~~~~~~~~~~g 319 (435)
T PRK06395 298 GINVLYLLKSDFVETLHQIYSG 319 (435)
T ss_pred HHhhhhhcccCHHHHHHHHhcC
Confidence 123345556666655554
No 71
>COG0458 CarB Carbamoylphosphate synthase large subunit (split gene in MJ) [Amino acid transport and metabolism / Nucleotide transport and metabolism]
Probab=99.17 E-value=8.1e-10 Score=104.41 Aligned_cols=178 Identities=17% Similarity=0.303 Sum_probs=111.1
Q ss_pred EEeCcHHHHHHhcCHHHHHHHHHhccccCCCCCccCCCEEEEecCCCChhHHHHhcCCCCcEEEeeCcCCCCccceeeEE
Q 024006 38 TVLDPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSL 117 (274)
Q Consensus 38 ~Vidp~~ai~~l~dR~~~~~~L~~~~~~~~~~~I~~P~~~~~~~~~~~~~~~l~~~~l~~P~VvKp~~a~Gs~~sh~m~i 117 (274)
+|..++++|+.+.||+++.+.++++ ++++| +.... ..++..+ ....++||+|+||..+- ++.+..+
T Consensus 103 vvgs~~eaI~iaeDr~~fke~m~ei-------gi~~P-~~~~~-~~~e~~~--~~~~ig~PvIVrP~~~l---GG~G~~i 168 (400)
T COG0458 103 VVGSDPEAIEIAEDKKLFKEAMREI-------GIPVP-SRIAH-SVEEADE--IADEIGYPVIVKPSFGL---GGSGGGI 168 (400)
T ss_pred EEecCHHHhhhhhhHHHHHHHHHHc-------CCCCC-ccccc-cHHHHhh--hHhhcCCCEEEecCcCC---CCCceeE
Confidence 5789999999999999999999997 89999 33332 2112222 12468899999998864 3457889
Q ss_pred EeChhhHhcc---------CCCeEEEecccCCCeEEEEEEECCEEE-EEEEecCCCCcccccccCCceeeecCccccccc
Q 024006 118 AYDQYSLKKL---------EPPLVLQEFVNHGGVLFKVYIVGEAIK-VVRRFSLPDVTKQDLSTSAGVFRFPRVSCAAAS 187 (274)
Q Consensus 118 v~~~~~l~~l---------~~p~vvQefI~h~g~~~KV~VIG~~v~-~~~R~S~p~~~~~~~~~~~g~~~~~~~~~~~~~ 187 (274)
+.|+++|..+ -.++++||+|. ++..+..-|+-|.-. +..--+.-|+++..+.+.+. +.-+.+
T Consensus 169 ~~n~eel~~~~~~~l~~s~~~~vl~eesi~-G~ke~e~ev~rd~~~n~ivvc~men~dp~gvhtgds------i~vapa- 240 (400)
T COG0458 169 AYNEEELEEIIEEGLRASPVEEVLIEESII-GWKEFEYEVVRDGKDNCIVVCNMENLDPMGVHTGDS------ITVAPA- 240 (400)
T ss_pred EeCHHHHHHHHHhccccCccccceeeeeec-CceEEEEEEEEeCCCCEEEEEeCCccccccccccce------eeeccc-
Confidence 9999998763 24689999996 456666666533311 01111122222221111110 000000
Q ss_pred CCcCCCCccccCCCChHHHHHHHHHHHHHhCCc-eeEEeEEEeCCCCCeEEEEeccCCCC
Q 024006 188 ADDADLDPCVAELPPRPLLERLAKELRRQLGLR-LFNLDIIREHGTRDQFYVIDINYFPG 246 (274)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~lA~~~~~~lGl~-l~G~Dvi~~~~~g~~~~ViDVN~fPg 246 (274)
+.-.|. ....++..+.++.+.+|+. =..+++.++.+++ ++||+|+|.=+|
T Consensus 241 --qtl~d~------eyq~~r~~~~~iir~igi~G~~niQ~av~~~~~-~~~viEvNpRvS 291 (400)
T COG0458 241 --QTLTDK------EYQMLRDAAIKVIREIGIEGGCNIQFAVDPGGG-ELYVIEINPRVS 291 (400)
T ss_pred --cccccH------HHHHHHHHHHHHHHHhcccCCCceeEEEcCCCc-eEEEEEecCCcC
Confidence 000010 1234566899999999999 1129999988666 899999996555
No 72
>PF02955 GSH-S_ATP: Prokaryotic glutathione synthetase, ATP-grasp domain; InterPro: IPR004218 Prokaryotic glutathione synthetase 6.3.2.3 from EC (glutathione synthase) catalyses the conversion of gamma-L-glutamyl-L-cysteine and glycine to orthophosphate and glutathione in the presence of ATP. This is the second step in glutathione biosynthesis. The enzyme is inhibited by 7,8-dihydrofolate, methotrexate and trimethoprim. This is the ATP-binding domain of the enzyme.; GO: 0004363 glutathione synthase activity, 0005524 ATP binding, 0006750 glutathione biosynthetic process; PDB: 1GLV_A 1GSA_A 1GSH_A 2GLT_A.
Probab=99.15 E-value=3e-10 Score=97.02 Aligned_cols=138 Identities=22% Similarity=0.308 Sum_probs=74.4
Q ss_pred cCCCEEEEecCCCChhHHHHhcCCCCcEEEeeCcCCCCccceeeEEEeCh-hhHhc--------cCCCeEEEecccC-CC
Q 024006 72 DVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQ-YSLKK--------LEPPLVLQEFVNH-GG 141 (274)
Q Consensus 72 ~~P~~~~~~~~~~~~~~~l~~~~l~~P~VvKp~~a~Gs~~sh~m~iv~~~-~~l~~--------l~~p~vvQefI~h-~g 141 (274)
.+|+|.+.. +.+.+.+.+++.+ -+|+||+.|+| +.++..+... ..+.. -..|+++|+|++. ..
T Consensus 11 ~~P~T~vs~-~~~~i~~f~~~~~---~~VlKPl~g~g---G~gV~~i~~~~~n~~~i~e~~~~~~~~~~mvQ~flp~i~~ 83 (173)
T PF02955_consen 11 LIPPTLVSR-DKEEIRAFIEEHG---DIVLKPLDGMG---GRGVFRISRDDPNLNSILETLTKNGERPVMVQPFLPEIKE 83 (173)
T ss_dssp CS--EEEES--HHHHHHHHHHHS---SEEEEESS--T---TTT-EEE-TT-TTHHHHHHHHTTTTTS-EEEEE--GGGGG
T ss_pred cCcCEEEEC-CHHHHHHHHHHCC---CEEEEECCCCC---CcCEEEEcCCCCCHHHHHHHHHhcCCccEEEEeccccccC
Confidence 369898875 4445666666665 39999999764 5567766663 22221 2468999999995 22
Q ss_pred eEEEEEEECCEEEEEEEecCCCCcccccccCCceeeecCcccccccCCcCCCCccccCCCChHHHHHHHHHHHHHh---C
Q 024006 142 VLFKVYIVGEAIKVVRRFSLPDVTKQDLSTSAGVFRFPRVSCAAASADDADLDPCVAELPPRPLLERLAKELRRQL---G 218 (274)
Q Consensus 142 ~~~KV~VIG~~v~~~~R~S~p~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lA~~~~~~l---G 218 (274)
-|.|+++++++...+.||-.. .++++.+ ... |++.....+ +++..++|.++...| |
T Consensus 84 GDkRii~~nG~~~~av~R~P~---~gd~R~N--------~~~-Gg~~~~~~l---------t~~e~~i~~~i~~~L~~~G 142 (173)
T PF02955_consen 84 GDKRIILFNGEPSHAVRRIPA---KGDFRSN--------LAA-GGSAEPAEL---------TEREREICEQIGPKLREDG 142 (173)
T ss_dssp -EEEEEEETTEE-SEEEEE-----SS-S-----------GGG-TSCEEEEE-----------HHHHHHHHHHHHHHHHTT
T ss_pred CCEEEEEECCEEhHHeecCCC---CCCceee--------ecc-CCceeecCC---------CHHHHHHHHHHHHHHhhcC
Confidence 389999999998877555321 1233322 122 222222222 234567777766665 8
Q ss_pred CceeEEeEEEeCCCCCeEEEEeccCC
Q 024006 219 LRLFNLDIIREHGTRDQFYVIDINYF 244 (274)
Q Consensus 219 l~l~G~Dvi~~~~~g~~~~ViDVN~f 244 (274)
+-++|+|+| |+ ++.|||.+
T Consensus 143 l~f~GiDvi-----g~--~l~EiNvt 161 (173)
T PF02955_consen 143 LLFVGIDVI-----GD--KLTEINVT 161 (173)
T ss_dssp --EEEEEEE-----TT--EEEEEE-S
T ss_pred cEEEEEecc-----cc--ceEEEecc
Confidence 999999999 22 68899975
No 73
>COG1821 Predicted ATP-utilizing enzyme (ATP-grasp superfamily) [General function prediction only]
Probab=99.04 E-value=4e-09 Score=94.07 Aligned_cols=165 Identities=21% Similarity=0.208 Sum_probs=98.9
Q ss_pred HHHHHHhcCHHHHHHHHHhccccCCCCCccCCCEEEEecCCCChhHHHHhcCCCCcEEEeeCcCCCCccceeeEEEeChh
Q 024006 43 PYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQY 122 (274)
Q Consensus 43 ~~ai~~l~dR~~~~~~L~~~~~~~~~~~I~~P~~~~~~~~~~~~~~~l~~~~l~~P~VvKp~~a~Gs~~sh~m~iv~~~~ 122 (274)
++|++.+-||+.++..|.. .+++|.+...- ...--.|+||..|||+. ++....+..
T Consensus 106 ~~Ai~v~aDK~lty~aLr~--------aV~~p~t~e~~-------------~~~~k~ViKp~dgCgge---~i~~~~~~p 161 (307)
T COG1821 106 PRAIRVAADKRLTYKALRD--------AVKQPPTREWA-------------EEPKKYVIKPADGCGGE---GILFGRDFP 161 (307)
T ss_pred HHHHhHhhhHHHHHHHHhh--------hccCCCccccc-------------cCCceEEecccccCCcc---eeeccCCCc
Confidence 7899999999999999987 47888876431 12226899999999773 333333322
Q ss_pred hHhccCCCeEEEecccCCCeEEEE-EEECCEEEEEEEecCCCCcccccccCCcee-eecCcccccccCCcCCCCccccCC
Q 024006 123 SLKKLEPPLVLQEFVNHGGVLFKV-YIVGEAIKVVRRFSLPDVTKQDLSTSAGVF-RFPRVSCAAASADDADLDPCVAEL 200 (274)
Q Consensus 123 ~l~~l~~p~vvQefI~h~g~~~KV-~VIG~~v~~~~R~S~p~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~ 200 (274)
+ -+++||||+ |.-+.| ..+|+++. |- ..|+ +.-.| .+.-.+.++. +.++.+
T Consensus 162 d------~~i~qEfIe--G~~lSVSL~~GEkv~-------pL-svNr---Qfi~~~~~~~~y~gg~----~pi~he---- 214 (307)
T COG1821 162 D------IEIAQEFIE--GEHLSVSLSVGEKVL-------PL-SVNR---QFIIFAGSELVYNGGR----TPIDHE---- 214 (307)
T ss_pred c------hhhHHHhcC--CcceEEEEecCCccc-------cc-eech---hhhhhccceeeeccCc----CCCCcH----
Confidence 2 289999996 444444 45588883 31 1111 11111 1111222221 122211
Q ss_pred CChHHHHHHHHHHHHHhC-Cc-eeEEeEEEeCCCCCeEEEEeccCCCC--CCCccc-chHHHHHHHHH
Q 024006 201 PPRPLLERLAKELRRQLG-LR-LFNLDIIREHGTRDQFYVIDINYFPG--YGKMPE-YEHIFTDFLLS 263 (274)
Q Consensus 201 ~~~~~~~~lA~~~~~~lG-l~-l~G~Dvi~~~~~g~~~~ViDVN~fPg--~~g~~~-~~~~l~~~l~~ 263 (274)
..++.-+.|.++.+.++ |+ ++|+|++.. + .+||||||.-|. +=|+.. +.+-+.+.|.+
T Consensus 215 -~k~~~~~~Ai~aVeci~Gl~GYVGVDlVls--D--~pYvIEINpR~TTp~vg~sr~~~~sv~~LLl~ 277 (307)
T COG1821 215 -LKREAFEEAIRAVECIPGLNGYVGVDLVLS--D--EPYVIEINPRPTTPTVGLSRVTPESVAELLLE 277 (307)
T ss_pred -HHHHHHHHHHHHHHhhccccceeeEEEEec--C--CcEEEEecCCCCcceeeeeccccHHHHHHHhc
Confidence 23456677877777776 77 889999996 2 479999999886 333332 23444444443
No 74
>PF02222 ATP-grasp: ATP-grasp domain; InterPro: IPR003135 The ATP-grasp domain has an unusual nucleotide-binding fold, also referred to as palmate, and is found in a superfamily of enzymes including D-alanine-D-alanine ligase, glutathione synthetase, biotin carboxylase, and carbamoyl phosphate synthetase, the ribosomal protein S6 modification enzyme (RimK), urea amidolyase, tubulin-tyrosine ligase, and three enzymes of purine biosynthesis. This family does not contain all known ATP-grasp domain members. All the enzymes of this family possess ATP-dependent carboxylate-amine ligase activity, and their catalytic mechanisms are likely to include acylphosphate intermediates.; PDB: 3K5H_C 3K5I_C 3AX6_A 3Q2O_B 3QFF_B 3R5H_A 3ORQ_B 3ORR_B 4E4T_B 2Z04_A ....
Probab=98.99 E-value=2.1e-09 Score=91.89 Aligned_cols=152 Identities=16% Similarity=0.234 Sum_probs=94.3
Q ss_pred CccCCCEEEEecCCCChhHHHHhcCCCCcEEEeeCcCCCCccceeeEEEeChhhHhcc-----CCCeEEEecccCCCeEE
Q 024006 70 KVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKKL-----EPPLVLQEFVNHGGVLF 144 (274)
Q Consensus 70 ~I~~P~~~~~~~~~~~~~~~l~~~~l~~P~VvKp~~a~Gs~~sh~m~iv~~~~~l~~l-----~~p~vvQefI~h~g~~~ 144 (274)
||++|+|..+.+ .+++.+.+ ..++||+|+|+..+ |. .++|..++.+++++... ..++++|+||+. .+++
T Consensus 5 gip~~~~~~i~~-~~~l~~a~--~~iG~P~vlK~~~~-GY-DGkGq~~i~~~~dl~~a~~~~~~~~~ilE~~v~f-~~Ei 78 (172)
T PF02222_consen 5 GIPTAPYATIDS-LEDLEEAA--ESIGFPAVLKTRRG-GY-DGKGQFVIRSEEDLEKAWQELGGGPCILEEFVPF-DREI 78 (172)
T ss_dssp T--B-EEEEESS-HHHHHHHH--HHHTSSEEEEESSS-SC-TTTTEEEESSGGGHHHHHHHTTTSCEEEEE---E-SEEE
T ss_pred CCCCCCeEEECC-HHHHHHHH--HHcCCCEEEEccCc-Cc-CCCccEEECCHHHHHHHHHhcCCCcEEEEeccCC-cEEE
Confidence 899999999963 33454433 35799999998884 34 68999999999998763 679999999984 6677
Q ss_pred EEEEECCE---EEEEEEecCCCCcccccccCCceeeecCcccccccCCcCCCCccccCCCChHHHHHHHHHHHHHhCCc-
Q 024006 145 KVYIVGEA---IKVVRRFSLPDVTKQDLSTSAGVFRFPRVSCAAASADDADLDPCVAELPPRPLLERLAKELRRQLGLR- 220 (274)
Q Consensus 145 KV~VIG~~---v~~~~R~S~p~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lA~~~~~~lGl~- 220 (274)
-|.|+-+. +.. -+..-|.. .+|.....- .++.+++.+ .++.+++|.++.++|+.-
T Consensus 79 SvivaR~~~G~~~~--yp~~en~~------~~~il~~s~--------~Pa~i~~~~-----~~~a~~ia~~i~~~l~~vG 137 (172)
T PF02222_consen 79 SVIVARDQDGEIRF--YPPVENVH------RDGILHESI--------APARISDEV-----EEEAKEIARKIAEALDYVG 137 (172)
T ss_dssp EEEEEEETTSEEEE--EEEEEEEE------ETTEEEEEE--------ESCSS-HHH-----HHHHHHHHHHHHHHHTSSE
T ss_pred EEEEEEcCCCCEEE--EcCceEEE------ECCEEEEEE--------CCCCCCHHH-----HHHHHHHHHHHHHHcCcEE
Confidence 87776221 111 11000110 112221111 112233322 467899999999999987
Q ss_pred eeEEeEEEeCCCCCeEEEEeccCCCCCCC
Q 024006 221 LFNLDIIREHGTRDQFYVIDINYFPGYGK 249 (274)
Q Consensus 221 l~G~Dvi~~~~~g~~~~ViDVN~fPg~~g 249 (274)
++++.+.+.. +|++.||.|+-.=|.-.|
T Consensus 138 v~~VE~Fv~~-~g~~v~vNEiaPRpHnSG 165 (172)
T PF02222_consen 138 VLAVEFFVTK-DGDEVLVNEIAPRPHNSG 165 (172)
T ss_dssp EEEEEEEEET-TSTEEEEEEEESS--GGG
T ss_pred EEEEEEEEec-CCCEEEEEeccCCccCcc
Confidence 8899999985 454599999987776554
No 75
>COG0027 PurT Formate-dependent phosphoribosylglycinamide formyltransferase (GAR transformylase) [Nucleotide transport and metabolism]
Probab=98.98 E-value=1.4e-08 Score=93.04 Aligned_cols=188 Identities=19% Similarity=0.271 Sum_probs=120.6
Q ss_pred HHHHHHHHhCCCcEEeCcHHHHHHhcCHHHHHHHHHhccccCCCCCccCCCEEEEecCCCChhHHHHhcCCCCcEEEeeC
Q 024006 25 QILEEYRQTHPEVTVLDPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPL 104 (274)
Q Consensus 25 ~~l~~y~~~~P~v~Vidp~~ai~~l~dR~~~~~~L~~~~~~~~~~~I~~P~~~~~~~~~~~~~~~l~~~~l~~P~VvKp~ 104 (274)
..|.+..+. |..|+=...+.+..|||.. +++|+.-.+ |+||-++...++ .+++.+. -..++||+||||+
T Consensus 89 d~L~elE~~--G~~VVP~ArAt~ltMnReg-iRrlAAeeL-----glpTs~Y~fa~s-~~e~~~a--~~~iGfPcvvKPv 157 (394)
T COG0027 89 DALVELEEE--GYTVVPNARATKLTMNREG-IRRLAAEEL-----GLPTSKYRFADS-LEELRAA--VEKIGFPCVVKPV 157 (394)
T ss_pred HHHHHHHhC--CceEccchHHHHhhhcHHH-HHHHHHHHh-----CCCCcccccccc-HHHHHHH--HHHcCCCeecccc
Confidence 466666666 6789999999999999988 444433222 889988888752 2234332 3468999999999
Q ss_pred cCCCCccceeeEEEeChhhHhcc-----------CCCeEEEecccCCCeEEEEEEECCEEEEEEEecCCCCcccccccCC
Q 024006 105 VADGSAKSHELSLAYDQYSLKKL-----------EPPLVLQEFVNHGGVLFKVYIVGEAIKVVRRFSLPDVTKQDLSTSA 173 (274)
Q Consensus 105 ~a~Gs~~sh~m~iv~~~~~l~~l-----------~~p~vvQefI~h~g~~~KV~VIG~~v~~~~R~S~p~~~~~~~~~~~ 173 (274)
.+ +.+||=+++.+++++.+. ..-+++++||+- ||-+-.+ ..|..-++
T Consensus 158 MS---SSGkGqsvv~~~e~ve~AW~~A~~g~R~~~~RVIVE~fv~f---d~EiTlL------tvr~~~~~---------- 215 (394)
T COG0027 158 MS---SSGKGQSVVRSPEDVEKAWEYAQQGGRGGSGRVIVEEFVKF---DFEITLL------TVRAVDGT---------- 215 (394)
T ss_pred cc---cCCCCceeecCHHHHHHHHHHHHhcCCCCCCcEEEEEEecc---eEEEEEE------EEEEecCC----------
Confidence 93 358999999999998753 446999999964 4443322 11111111
Q ss_pred ceeeecCcccccccCCcCCCCccc--cCCCC--hHHHHHHHHHHHHHhCCc-eeEEeEEEeCCCCCeEEEEeccCCCCCC
Q 024006 174 GVFRFPRVSCAAASADDADLDPCV--AELPP--RPLLERLAKELRRQLGLR-LFNLDIIREHGTRDQFYVIDINYFPGYG 248 (274)
Q Consensus 174 g~~~~~~~~~~~~~~~~~~~~~~~--~~~~~--~~~~~~lA~~~~~~lGl~-l~G~Dvi~~~~~g~~~~ViDVN~fPg~~ 248 (274)
+.|+-+-. -...+.++-++. ..|+. .++-+.+|+++.++||.. +||+.+.+. ||+.++-||-.-|.=+
T Consensus 216 ~~Fc~PIG----Hrq~dgdY~ESWQP~~mS~~al~~A~~IA~~vt~aLGG~GiFGVElfv~---gDeV~FsEVSPRPHDT 288 (394)
T COG0027 216 GSFCAPIG----HRQEDGDYRESWQPQEMSEAALEEAQSIAKRVTDALGGRGLFGVELFVK---GDEVIFSEVSPRPHDT 288 (394)
T ss_pred CCcCCCcc----cccCCCChhcccCccccCHHHHHHHHHHHHHHHHhhcCccceeEEEEEe---CCEEEEeecCCCCCCC
Confidence 01110000 000011110100 11211 245678999999999876 999999995 4579999999999987
Q ss_pred Cccc
Q 024006 249 KMPE 252 (274)
Q Consensus 249 g~~~ 252 (274)
|+-.
T Consensus 289 GmVT 292 (394)
T COG0027 289 GMVT 292 (394)
T ss_pred ceEE
Confidence 7654
No 76
>PF14398 ATPgrasp_YheCD: YheC/D like ATP-grasp
Probab=98.97 E-value=2.2e-08 Score=90.97 Aligned_cols=192 Identities=16% Similarity=0.244 Sum_probs=115.3
Q ss_pred HHhCCCcEEeCcHHHHHHhcCHHHHHHHHHhccccCCCCCccCCCEEEEecCCCChhHHHHhcCCCCcEEEeeCcCCCCc
Q 024006 31 RQTHPEVTVLDPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSA 110 (274)
Q Consensus 31 ~~~~P~v~Vidp~~ai~~l~dR~~~~~~L~~~~~~~~~~~I~~P~~~~~~~~~~~~~~~l~~~~l~~P~VvKp~~a~Gs~ 110 (274)
+++++++++.|| ...||+.+++.|.+... ..-..|.|..+. +.+++.+.|...+ -+++||..|+
T Consensus 3 ~k~~~~i~~~n~-----~~~~Kw~v~~~L~~~~~----l~~~LP~T~~~~-~~~~l~~~L~~y~---~vylKP~~Gs--- 66 (262)
T PF14398_consen 3 LKKQKGIPFFNP-----GFFDKWEVYKALSRDPE----LRPYLPETELLT-SFEDLREMLNKYK---SVYLKPDNGS--- 66 (262)
T ss_pred hHhcCCCEEeCC-----CCCCHHHHHHHHHcCCc----chhhCCCceEcC-CHHHHHHHHHHCC---EEEEEeCCCC---
Confidence 567789999999 45899999999987421 123489998885 3334555565554 7899999854
Q ss_pred cceeeEEEeChh-h---------------------Hhc-----c-CCCeEEEecccC---C--CeEEEEEEE--C--CE-
Q 024006 111 KSHELSLAYDQY-S---------------------LKK-----L-EPPLVLQEFVNH---G--GVLFKVYIV--G--EA- 152 (274)
Q Consensus 111 ~sh~m~iv~~~~-~---------------------l~~-----l-~~p~vvQefI~h---~--g~~~KV~VI--G--~~- 152 (274)
.+.++..+...+ + +.. + ..++++||.|+- + -.|+||.|- | ..
T Consensus 67 ~G~gI~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~yIiQq~I~l~~~~gr~fD~RvlvqK~~~G~W~ 146 (262)
T PF14398_consen 67 KGKGIIRIEKKGGGYRIQYRNKKKNVRRTFSSLEELEQFLKELLGKRRYIIQQGIPLATYDGRPFDFRVLVQKNGSGKWQ 146 (262)
T ss_pred CCccEEEEEEeCCEEEEEEccCCceeEEEeCCHHHHHHHHHHhcCCCcEEEeCCccccccCCCeEEEEEEEEECCCCCEE
Confidence 344544333321 1 111 1 458999999984 3 469999998 2 22
Q ss_pred EEE-EEEecCCCCcccccccCCceeeecCcccccccCCcCC-CCccccC-CCChHHHH----HHHHHHHHHhCC--ceeE
Q 024006 153 IKV-VRRFSLPDVTKQDLSTSAGVFRFPRVSCAAASADDAD-LDPCVAE-LPPRPLLE----RLAKELRRQLGL--RLFN 223 (274)
Q Consensus 153 v~~-~~R~S~p~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~----~lA~~~~~~lGl--~l~G 223 (274)
+.+ +.|...++ .+.++ ++++|....... +... .+ ....+++. .+|..+.+.+|. .-+|
T Consensus 147 vtg~~~Rva~~~----~ivTN--------~~~GG~~~~~~~~l~~~-~~~~~~~~~l~~~a~~ia~~le~~~~~~~gElG 213 (262)
T PF14398_consen 147 VTGIVARVAKPG----SIVTN--------LSQGGTALPFEEVLRQS-EEAEKIREELEDLALEIAQALEKHFGGHLGELG 213 (262)
T ss_pred EEEEEEEEcCCC----Cceec--------cCCCceecCHHHHHHhh-hhHHHHHHHHHHHHHHHHHHHHHhcCCceeEEE
Confidence 333 47776543 11111 222221100000 0000 00 00122344 455566666674 5679
Q ss_pred EeEEEeCCCCCeEEEEeccCCCCCCCcccc
Q 024006 224 LDIIREHGTRDQFYVIDINYFPGYGKMPEY 253 (274)
Q Consensus 224 ~Dvi~~~~~g~~~~ViDVN~fPg~~g~~~~ 253 (274)
+|+.+|. +| +++++|||+-||-..+...
T Consensus 214 iDl~iD~-~g-~iWliEvN~kP~~~~~~~~ 241 (262)
T PF14398_consen 214 IDLGIDK-NG-KIWLIEVNSKPGKFDFRDI 241 (262)
T ss_pred EEEEEcC-CC-CEEEEEEeCCCCcchhhcc
Confidence 9999996 56 7999999999997777765
No 77
>PRK13278 purP 5-formaminoimidazole-4-carboxamide-1-(beta)-D-ribofuranosyl 5'-monophosphate synthetase; Provisional
Probab=98.91 E-value=1.5e-07 Score=89.15 Aligned_cols=195 Identities=15% Similarity=0.219 Sum_probs=113.2
Q ss_pred cEEeCcHHHHHHhcCHHHHHHHHHhccccCCCCCccCCCEEEEecCCCChhHHHHhcCCCCcEEEeeCcCCCCccceeeE
Q 024006 37 VTVLDPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELS 116 (274)
Q Consensus 37 v~Vidp~~ai~~l~dR~~~~~~L~~~~~~~~~~~I~~P~~~~~~~~~~~~~~~l~~~~l~~P~VvKp~~a~Gs~~sh~m~ 116 (274)
+++.=..++++...||..+-+.|.++ ||++|+++ + +. ..+.||+|+||..| .++.++.
T Consensus 109 ~p~~gn~~~l~~e~dK~~~k~~L~~a-------GIp~p~~~--~-~~---------~~i~~PvIVKp~~g---~ggkGv~ 166 (358)
T PRK13278 109 VPMFGNREILRWEADRDKERKLLEEA-------GIRIPRKY--E-SP---------EDIDRPVIVKLPGA---KGGRGYF 166 (358)
T ss_pred CCcCCCHHHHHHhcCHHHHHHHHHHc-------CCCCCCEe--C-CH---------HHcCCCEEEEeCCC---CCCCCeE
Confidence 45655777899999999999999986 89999973 2 11 12579999999654 3578999
Q ss_pred EEeChhhHhcc------------CCCeEEEecccCCCeEEEE--EEE--CCE--EEEEEEecCCCCcccccccCCceeee
Q 024006 117 LAYDQYSLKKL------------EPPLVLQEFVNHGGVLFKV--YIV--GEA--IKVVRRFSLPDVTKQDLSTSAGVFRF 178 (274)
Q Consensus 117 iv~~~~~l~~l------------~~p~vvQefI~h~g~~~KV--~VI--G~~--v~~~~R~S~p~~~~~~~~~~~g~~~~ 178 (274)
++.+++++.+. ...+++||||. |..|-+ |+- -++ +.+.-||-..|. ++.+..
T Consensus 167 i~~s~~El~~~~~~l~~~~~~~~~~~~iIEEfI~--G~e~sv~~f~s~~~~~~e~l~id~r~~~~~--------d~~~r~ 236 (358)
T PRK13278 167 IAKSPEEFKEKIDKLIERGLITEVEEAIIQEYVV--GVPYYFHYFYSPIKNRLELLGIDRRYESNI--------DGLVRI 236 (358)
T ss_pred EeCCHHHHHHHHHHHHhccccCCCCeEEEEecCC--CcEEEEEEEEeccCCeEEEEeeceeeeecc--------cceeec
Confidence 99999887531 46799999995 666554 443 244 334444433331 122221
Q ss_pred cCcccccc-----cCCcCCCCccccCCCChHHHHHHHHHHHHH----h--CCc-eeEEeEEEeCCCCCeEEEEeccCCC-
Q 024006 179 PRVSCAAA-----SADDADLDPCVAELPPRPLLERLAKELRRQ----L--GLR-LFNLDIIREHGTRDQFYVIDINYFP- 245 (274)
Q Consensus 179 ~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~lA~~~~~~----l--Gl~-l~G~Dvi~~~~~g~~~~ViDVN~fP- 245 (274)
+...+... ....... |....-...+.+.+++.++.++ + |+. -|++|++++. ++ +++|+|||.=+
T Consensus 237 p~~~~~~~~~~p~~v~~Gn~-P~~~resll~~v~~~~~~~v~a~~~~~~~~~~Gp~~ie~~~~~-d~-~~~V~Eis~R~~ 313 (358)
T PRK13278 237 PAKDQLELGIDPTYVVVGNI-PVVLRESLLPQVFEYGERFVETSKELVPPGMIGPFCLESVVTD-NL-EIVVFEISARIV 313 (358)
T ss_pred cchhhhhcccCCceeEecce-eccchHhHHHHHHHHHHHHHHHHHHhcCccccCCceEEEEEcC-CC-CEEEEEEeCccc
Confidence 11100000 0000000 0000000123444555555555 5 433 5679999975 34 58999999988
Q ss_pred C-----CCCcccch-----------HHHHHHHHHHHHh
Q 024006 246 G-----YGKMPEYE-----------HIFTDFLLSLTQS 267 (274)
Q Consensus 246 g-----~~g~~~~~-----------~~l~~~l~~~~~~ 267 (274)
| +.|.| |. ..++..|+..+++
T Consensus 314 ggtn~~~~~s~-y~~~~~~~~~~~grria~ei~~a~~~ 350 (358)
T PRK13278 314 AGTNLYMNGSP-YSYLYWDEPMSMGRRIAREIKLALEK 350 (358)
T ss_pred CCccceeCCCc-chheecCCcccHHHHHHHHHHHHHhh
Confidence 4 44566 43 4455555555543
No 78
>PRK05784 phosphoribosylamine--glycine ligase; Provisional
Probab=98.89 E-value=1.2e-07 Score=93.13 Aligned_cols=110 Identities=13% Similarity=0.155 Sum_probs=75.7
Q ss_pred HHHHHHHHhCCCcEEe-CcHHHHHHhcCHHHHHHHHHhccccCCCCCccCC-CEEEEecCCCChhHHHHhcCCCCcEEEe
Q 024006 25 QILEEYRQTHPEVTVL-DPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVP-RQLVIERDASSIPDVVLKAGLTLPLVAK 102 (274)
Q Consensus 25 ~~l~~y~~~~P~v~Vi-dp~~ai~~l~dR~~~~~~L~~~~~~~~~~~I~~P-~~~~~~~~~~~~~~~l~~~~l~~P~VvK 102 (274)
+.+.+..++ -+++++ .+.++.+...||..|-+.|.++ +|++| ++..++ +.+++.+.+. . .+|+|+|
T Consensus 83 ~glad~l~~-~Gi~v~Gps~~aa~le~dK~~~K~~l~~~-------gIpt~~~~~~~~-~~~ea~~~~~--~-~~PvVVK 150 (486)
T PRK05784 83 AGVADVLRE-EGFPVFGASSKCARIEKSKVWARELMWKY-------SIPGRLRYKVFY-DVEEAAKFIE--Y-GGSVAIK 150 (486)
T ss_pred HHHHHHHHh-CCCCEECCcHHHHHHhcCHHHHHHHHHHc-------CcCCCccceEeC-CHHHHHHHHh--h-cCCEEEe
Confidence 344444444 356554 7778899999999988888885 89997 566664 3333333332 2 3699999
Q ss_pred eCcCCCCccceeeEEEeChhh---------H----hc----------cCCCeEEEecccCCCeEEEEEEECC
Q 024006 103 PLVADGSAKSHELSLAYDQYS---------L----KK----------LEPPLVLQEFVNHGGVLFKVYIVGE 151 (274)
Q Consensus 103 p~~a~Gs~~sh~m~iv~~~~~---------l----~~----------l~~p~vvQefI~h~g~~~KV~VIG~ 151 (274)
|..+. .|.+|.++.+.++ + +. .+.++++|||+. |..+-|.++.|
T Consensus 151 P~~~a---ggkGV~iv~~~~e~~~~~~~ea~~~a~~~~~~~~~~~g~~~~~VlIEEfL~--G~E~SV~al~d 217 (486)
T PRK05784 151 PARQA---GGKGVKVIADLQAYLSQEKREALTKSVNDIKEGSAYYKDVEPKILVEEKVD--GVEYTLQVLTD 217 (486)
T ss_pred eCCCC---CCCCEEEECChhHhcchhHHHHHHHHHHHHHHhHhhccCCCCeEEEEEccC--CeEEEEEEEEC
Confidence 97743 5679999998652 1 11 135799999994 88999888843
No 79
>PF14397 ATPgrasp_ST: Sugar-transfer associated ATP-grasp
Probab=98.84 E-value=1.3e-06 Score=80.28 Aligned_cols=195 Identities=17% Similarity=0.203 Sum_probs=115.8
Q ss_pred CcHHHHHHhcCHHHHHHHHHhccccCCCCCccCCCEEEE-ecC------C---CChhHHHHhcCCCCcEEEeeCcCCCCc
Q 024006 41 DPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVI-ERD------A---SSIPDVVLKAGLTLPLVAKPLVADGSA 110 (274)
Q Consensus 41 dp~~ai~~l~dR~~~~~~L~~~~~~~~~~~I~~P~~~~~-~~~------~---~~~~~~l~~~~l~~P~VvKp~~a~Gs~ 110 (274)
||.+....+.||..+.+++.+. ||++|+.+.. .+. . +++.+.+.. ....++|+||..| |
T Consensus 16 N~~~~~~l~~DK~~~~~l~~~~-------gi~vP~~i~~~~~~~~~~~~~~~~~~l~~~l~~-~~~~~~viKP~~G--~- 84 (285)
T PF14397_consen 16 NPREYYPLLDDKLLFKQLFRDY-------GIPVPEAIFNVGRDYFDLREQHSIEDLEEFLRK-HAPDRFVIKPANG--S- 84 (285)
T ss_pred CchhhccccCCHHHHHHHHHHh-------cCCCCceEEeccceEEecccccCHHHHHHHHHh-ccCCcEEEEeCCC--C-
Confidence 7889999999999999999886 8889984331 111 1 122222322 2247999999874 4
Q ss_pred cceeeEEEeChhh---------Hh----ccC-CCeEEEecccC----------CCeEEEEEEE-CC---EEE-EEEEecC
Q 024006 111 KSHELSLAYDQYS---------LK----KLE-PPLVLQEFVNH----------GGVLFKVYIV-GE---AIK-VVRRFSL 161 (274)
Q Consensus 111 ~sh~m~iv~~~~~---------l~----~l~-~p~vvQefI~h----------~g~~~KV~VI-G~---~v~-~~~R~S~ 161 (274)
+++|+.++...++ +. ... ..+++||+|.- +=-++||.++ .+ ++. +..|-+.
T Consensus 85 ~G~Gi~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~liqe~i~qh~~~~~~~~~svnTiRvvT~~~~~~~~~~~a~lRlg~ 164 (285)
T PF14397_consen 85 GGKGILVIDRRDGSEINRDISALYAGLESLGGKDYLIQERIEQHPELAALSPSSVNTIRVVTFLDDGEVEVLMAMLRLGR 164 (285)
T ss_pred CccCEEEEEeecCcccccchhHHHHHHHhcCCccEEEEecccCCHHHHhhCCCCCCcEEEEEEEeCCeeEEEEEEEEeCC
Confidence 5778887766542 11 112 27999999863 1246898877 32 333 3467652
Q ss_pred CCCcccccccCCcee---eecCc-ccc-cccCCcCC--CCccc------cCCCChHHHHHHHHHHHHHh-CCceeEEeEE
Q 024006 162 PDVTKQDLSTSAGVF---RFPRV-SCA-AASADDAD--LDPCV------AELPPRPLLERLAKELRRQL-GLRLFNLDII 227 (274)
Q Consensus 162 p~~~~~~~~~~~g~~---~~~~~-~~~-~~~~~~~~--~~~~~------~~~~~~~~~~~lA~~~~~~l-Gl~l~G~Dvi 227 (274)
.....+.+.+ .|.. +.... ... +....... ..|+. ..+|.-+++.++|.++++.+ ++.+.|.|+.
T Consensus 165 ~~~~~DN~~~-Ggi~~~ID~~tGl~~~~~~~~~~~~~~~HPdTg~~~~g~~IP~w~~~~~l~~~~~~~~p~~~~iGWDva 243 (285)
T PF14397_consen 165 GGSGVDNFHQ-GGIGVGIDLATGLGRFAGYDQDGERYEHHPDTGAPFSGFQIPNWDEILELAKEAHRKFPGLGYIGWDVA 243 (285)
T ss_pred CCCcccccCC-CCEEEEEecCCCccccccccCCCCEeeeCCCCCCccCCccCCCHHHHHHHHHHHHHHCCCCCeEEEEEE
Confidence 2111111111 1211 11111 000 00000011 11221 24566678899999998765 7999999999
Q ss_pred EeCCCCCeEEEEeccCC--CCCCCc
Q 024006 228 REHGTRDQFYVIDINYF--PGYGKM 250 (274)
Q Consensus 228 ~~~~~g~~~~ViDVN~f--Pg~~g~ 250 (274)
++. +| +++||.|+. ||+.-.
T Consensus 244 it~-~G--p~llE~N~~~~pgl~~~ 265 (285)
T PF14397_consen 244 ITE-DG--PVLLEGNARWDPGLMIQ 265 (285)
T ss_pred EcC-CC--cEEEEeeCCCCCCcHhh
Confidence 986 45 799999999 998755
No 80
>COG2232 Predicted ATP-dependent carboligase related to biotin carboxylase [General function prediction only]
Probab=98.82 E-value=4.1e-08 Score=90.50 Aligned_cols=159 Identities=23% Similarity=0.295 Sum_probs=99.6
Q ss_pred CcHHHHHHhcCHHHHHHHHHhccccCCCCCccCCCEEEEecCCCChhHHHHhcCCCCcEEEeeCcCCCCccceeeEEEeC
Q 024006 41 DPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYD 120 (274)
Q Consensus 41 dp~~ai~~l~dR~~~~~~L~~~~~~~~~~~I~~P~~~~~~~~~~~~~~~l~~~~l~~P~VvKp~~a~Gs~~sh~m~iv~~ 120 (274)
||-..+..+-+|.+.++.|..+ |++.|...-++ .+ ..-.+++|.||+.|+|.. +-++.-
T Consensus 111 ~P~~~v~~~snk~~~~r~l~~l-------gmp~p~~~~~e--------~~--~~gekt~IlKPv~GaGG~----~el~~~ 169 (389)
T COG2232 111 EPEVKVVEASNKLKFYRKLEVL-------GMPEPSEKKIE--------PL--EEGEKTLILKPVSGAGGL----VELVKF 169 (389)
T ss_pred CcHHHHHHHHHHHhhhhhhhhc-------CCCCChhhhhh--------hh--hhcceeeEEeeccCCCce----eeeccc
Confidence 4555888999999999999887 67777543331 11 112559999999986552 333322
Q ss_pred hhhHhccCCCeEEEecccCCCeEEEEEEECCE----EEEEEEecCCCCcccccccCCceeeecCcccccccCCcCCCCcc
Q 024006 121 QYSLKKLEPPLVLQEFVNHGGVLFKVYIVGEA----IKVVRRFSLPDVTKQDLSTSAGVFRFPRVSCAAASADDADLDPC 196 (274)
Q Consensus 121 ~~~l~~l~~p~vvQefI~h~g~~~KV~VIG~~----v~~~~R~S~p~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 196 (274)
.++.. ..++++|||| .|+-..|-+|++. ..++-+.-+ ++ .....+.|.| ++ .+.|.
T Consensus 170 ~Ee~~--~~~~i~Qefi--~G~p~Svs~is~g~~a~~la~N~QiI-~~----~~~~~~~f~Y----~G-------NlTP~ 229 (389)
T COG2232 170 DEEDP--PPGFIFQEFI--EGRPVSVSFISNGSDALTLAVNDQII-DG----LRGEYSQFVY----KG-------NLTPF 229 (389)
T ss_pred ccccC--Ccceehhhhc--CCceeEEEEEecCcceEEEEEeeeee-cc----ccccccccee----cc-------CcCCC
Confidence 22222 3789999999 5999999999773 333322211 11 0111222322 11 11121
Q ss_pred ccCCCChHHHHHHHHHHHHHhCCc-eeEEeEEEeCCCCCeEEEEeccCCC
Q 024006 197 VAELPPRPLLERLAKELRRQLGLR-LFNLDIIREHGTRDQFYVIDINYFP 245 (274)
Q Consensus 197 ~~~~~~~~~~~~lA~~~~~~lGl~-l~G~Dvi~~~~~g~~~~ViDVN~fP 245 (274)
..+ ..+++++||..+...|||- .-|+|++..+ .| +||||||.-+
T Consensus 230 ~~~--~~ee~e~la~elV~~lgL~GsnGVDfvl~d-~g--pyViEVNPR~ 274 (389)
T COG2232 230 PYE--EVEEAERLAEELVEELGLVGSNGVDFVLND-KG--PYVIEVNPRI 274 (389)
T ss_pred cch--hhHHHHHHHHHHHHHhccccccccceEeec-CC--cEEEEecCcc
Confidence 111 1257899999999999998 5689999975 34 7999999544
No 81
>COG3919 Predicted ATP-grasp enzyme [General function prediction only]
Probab=98.75 E-value=7.8e-08 Score=87.71 Aligned_cols=171 Identities=17% Similarity=0.243 Sum_probs=107.7
Q ss_pred EeCcHHHHHHhcCHHHHHHHHHhccccCCCCCccCCCEEEEecCCCChhHHHHhcCCCCcEEEeeCcCCCC-ccce-eeE
Q 024006 39 VLDPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGS-AKSH-ELS 116 (274)
Q Consensus 39 Vidp~~ai~~l~dR~~~~~~L~~~~~~~~~~~I~~P~~~~~~~~~~~~~~~l~~~~l~~P~VvKp~~a~Gs-~~sh-~m~ 116 (274)
++=+.+..+-+.+|=..|++-+++ |++.|+|+.+++..+ . .-..+.||+|.||-.|+|. ..++ +..
T Consensus 102 ~lp~w~~l~wlceKPllY~ra~el-------gl~~P~Ty~v~S~~d-~----~~~el~FPvILKP~mgg~~~~~araKa~ 169 (415)
T COG3919 102 PLPDWALLRWLCEKPLLYNRAEEL-------GLPYPKTYLVNSEID-T----LVDELTFPVILKPGMGGSVHFEARAKAF 169 (415)
T ss_pred CCCcHHHHHHHhhCcHHHHHHHHh-------CCCCcceEEecchhh-h----hhhheeeeEEecCCCCCcceeehhhhee
Confidence 344566777777887888887776 899999999974332 2 1246999999999996432 2222 234
Q ss_pred EEeChhhHhcc---------CCCeEEEecccCCCeEEEEE---EE-CCEEEE-EEEecCCCCcccccccCCceeeecCcc
Q 024006 117 LAYDQYSLKKL---------EPPLVLQEFVNHGGVLFKVY---IV-GEAIKV-VRRFSLPDVTKQDLSTSAGVFRFPRVS 182 (274)
Q Consensus 117 iv~~~~~l~~l---------~~p~vvQefI~h~g~~~KV~---VI-G~~v~~-~~R~S~p~~~~~~~~~~~g~~~~~~~~ 182 (274)
.+.+.++++.. ...+++||||+.+|.--++| +- |..|.- ..||-. . +
T Consensus 170 ~a~d~ee~k~a~~~a~eeigpDnvvvQe~IPGGgE~qfsyaAlw~~g~pvaeftarr~r-q------------y------ 230 (415)
T COG3919 170 TAADNEEMKLALHRAYEEIGPDNVVVQEFIPGGGENQFSYAALWDKGHPVAEFTARRLR-Q------------Y------ 230 (415)
T ss_pred eccCHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccchHHHHHhCCCchhhhhcchhh-c------------C------
Confidence 55566666531 34699999999776543332 22 222210 122211 0 0
Q ss_pred cccccCCcCCCCccccCCCChHHHHHHHHHHHHHhCCc-eeEEeEEEeCCCCCeEEEEeccCCCC
Q 024006 183 CAAASADDADLDPCVAELPPRPLLERLAKELRRQLGLR-LFNLDIIREHGTRDQFYVIDINYFPG 246 (274)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~lA~~~~~~lGl~-l~G~Dvi~~~~~g~~~~ViDVN~fPg 246 (274)
..+..+.....+.+++..+-+.|+++-+..+-+ +.-||+=.|.++| .+.++|||.-|+
T Consensus 231 -----Pvdfgytst~vevvDn~Q~i~aar~~L~si~htGlvevefK~D~RDG-s~KlldvNpRpw 289 (415)
T COG3919 231 -----PVDFGYTSTVVEVVDNQQVIQAARDFLESIEHTGLVEVEFKYDPRDG-SYKLLDVNPRPW 289 (415)
T ss_pred -----CcccccccEEEEecCcHHHHHHHHHHHHhhcccceEEEEEEecCCCC-ceeEEeecCCCc
Confidence 001111222334555566677777777777777 5569999998888 699999999997
No 82
>PRK13277 5-formaminoimidazole-4-carboxamide-1-(beta)-D-ribofuranosyl 5'-monophosphate synthetase-like protein; Provisional
Probab=98.75 E-value=2.7e-07 Score=86.97 Aligned_cols=164 Identities=13% Similarity=0.158 Sum_probs=95.2
Q ss_pred cCHHHHHHHHHhccccCCCCCccCCCEEEEecCCCChhHHHHhcCCCCcEEEeeCcCCCCccceeeEEEeChhhHhcc--
Q 024006 50 HNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKKL-- 127 (274)
Q Consensus 50 ~dR~~~~~~L~~~~~~~~~~~I~~P~~~~~~~~~~~~~~~l~~~~l~~P~VvKp~~a~Gs~~sh~m~iv~~~~~l~~l-- 127 (274)
+||..+++.|++. ||++|+++.- . ..+.||+||||..|.|. .|.+..++.+.++|...
T Consensus 125 ~dKk~~yk~L~~a-------GI~~Pk~~~~---p---------~eId~PVIVKp~~asG~-~srG~f~a~s~eEl~~~a~ 184 (366)
T PRK13277 125 TGEKNYYWLLEKA-------GIPYPKLFKD---P---------EEIDRPVIVKLPEAKRR-LERGFFTASSYEDFYEKSE 184 (366)
T ss_pred cCHHHHHHHHHHc-------CCCCceeecC---c---------cccCccEEEEECCCCCc-cccCeEeeCCHHHHHHHHH
Confidence 4556677888875 8999988752 1 24789999999997653 37899999999988642
Q ss_pred ---C---------CCeEEEecccCCCeEEE--EEEE--CC--EEEEEEEecCCCCcccccccCCceeeecCcccccc---
Q 024006 128 ---E---------PPLVLQEFVNHGGVLFK--VYIV--GE--AIKVVRRFSLPDVTKQDLSTSAGVFRFPRVSCAAA--- 186 (274)
Q Consensus 128 ---~---------~p~vvQefI~h~g~~~K--V~VI--G~--~v~~~~R~S~p~~~~~~~~~~~g~~~~~~~~~~~~--- 186 (274)
+ ..+++||||. |..|- +|+- -+ ...+..||-..|+ +|+...+...+...
T Consensus 185 ~l~~~g~I~~~~~~~~iIQEyI~--G~ey~~d~F~s~l~g~ve~l~id~R~esn~--------dg~~r~pa~~ql~~~~~ 254 (366)
T PRK13277 185 ELIKAGVIDREDLKNARIEEYVI--GAHFNFNYFYSPIRDRLELLGIDRRIQSNL--------DGFVRLPAPQQLKLNEE 254 (366)
T ss_pred hhhhcCcccccccccceeEeccC--CCEEEEEEEEeccCCcEEEEEEeecccccc--------ccccccChhhhhhcccC
Confidence 1 2357999996 55443 4543 45 2334444322232 22222211101000
Q ss_pred --cCCcCCCCccccCCCChHHHHHHHHHHHHHhC-------CceeEEeEEEeCCCCCeEEEEeccCCCC
Q 024006 187 --SADDADLDPCVAELPPRPLLERLAKELRRQLG-------LRLFNLDIIREHGTRDQFYVIDINYFPG 246 (274)
Q Consensus 187 --~~~~~~~~~~~~~~~~~~~~~~lA~~~~~~lG-------l~l~G~Dvi~~~~~g~~~~ViDVN~fPg 246 (274)
...... .|....-...+.+.+++.++.++++ .--|.+|.++++ ++ .++|+|||.=.|
T Consensus 255 p~~vv~G~-~p~t~rEslle~v~e~ger~v~a~~~~~~pg~iGpf~lQ~iv~~-d~-~~~V~EInpR~g 320 (366)
T PRK13277 255 PRYIEVGH-EPATIRESLLEKVFEIGEKFVEATKELYPPGIIGPFTLQTIVTP-DL-DFVVYDVAPRIG 320 (366)
T ss_pred CceEEEcC-ccccchHHHHHHHHHHHHHHHHHhhhhcCcccccceEEEEEEcC-CC-cEEEEEEcCCcC
Confidence 000000 0001000123567788888888877 335669989875 34 689999996433
No 83
>COG0026 PurK Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) [Nucleotide transport and metabolism]
Probab=98.65 E-value=1.5e-06 Score=81.66 Aligned_cols=185 Identities=17% Similarity=0.162 Sum_probs=123.9
Q ss_pred HHHHHHhCCCcEEeCcHHHHHHhcCHHHHHHHHHhccccCCCCCccCCCEEEEecCCCChhHHHHhcCCCCcEEEeeCcC
Q 024006 27 LEEYRQTHPEVTVLDPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVA 106 (274)
Q Consensus 27 l~~y~~~~P~v~Vidp~~ai~~l~dR~~~~~~L~~~~~~~~~~~I~~P~~~~~~~~~~~~~~~l~~~~l~~P~VvKp~~a 106 (274)
.-++++.+ +.|.=++++++...||+..=+.|.++ |+++|+|..+++. +++.+.+. .++||.|+|...|
T Consensus 77 aL~~l~~~--~~v~p~~~~l~~~qdR~~eK~~l~~~-------Gi~va~~~~v~~~-~el~~~~~--~~g~p~VlKtr~g 144 (375)
T COG0026 77 ALEKLAAS--VKVFPSPDALRIAQDRLVEKQFLDKA-------GLPVAPFQVVDSA-EELDAAAA--DLGFPAVLKTRRG 144 (375)
T ss_pred HHHHHHhh--cCcCCCHHHHHHHhhHHHHHHHHHHc-------CCCCCCeEEeCCH-HHHHHHHH--HcCCceEEEeccc
Confidence 33444443 55666899999999999988888886 8999999999633 35555454 4679999999885
Q ss_pred CCCccceeeEEEeChhhHhc-------cCCCeEEEecccCCCeEEEEEEE---CCEEEEEEEecCCCCcccccccCCcee
Q 024006 107 DGSAKSHELSLAYDQYSLKK-------LEPPLVLQEFVNHGGVLFKVYIV---GEAIKVVRRFSLPDVTKQDLSTSAGVF 176 (274)
Q Consensus 107 ~Gs~~sh~m~iv~~~~~l~~-------l~~p~vvQefI~h~g~~~KV~VI---G~~v~~~~R~S~p~~~~~~~~~~~g~~ 176 (274)
|= +++|-.++.+++++.. ...| ++++||+- .+++.|.+. .+++. ..+..-|+. .+|++
T Consensus 145 -GY-DGkGQ~~i~~~~~~~~~~~~~~~~~~~-vlE~fV~F-~~EiSvi~aR~~~G~~~--~yP~~eN~h------~~gIl 212 (375)
T COG0026 145 -GY-DGKGQWRIRSDADLELRAAGLAEGGVP-VLEEFVPF-EREISVIVARSNDGEVA--FYPVAENVH------RNGIL 212 (375)
T ss_pred -cc-cCCCeEEeeCcccchhhHhhhhccCce-eEEeeccc-ceEEEEEEEEcCCCCEE--Eecccceee------ecCEE
Confidence 44 7889999998877654 1334 99999974 556777666 11221 111111211 12332
Q ss_pred eecCcccccccCCcCCCCccccCCCChHHHHHHHHHHHHHhCCc-eeEEeEEEeCCCCCeEEEEeccCCCCCCCc
Q 024006 177 RFPRVSCAAASADDADLDPCVAELPPRPLLERLAKELRRQLGLR-LFNLDIIREHGTRDQFYVIDINYFPGYGKM 250 (274)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lA~~~~~~lGl~-l~G~Dvi~~~~~g~~~~ViDVN~fPg~~g~ 250 (274)
.+.-. ++.+++. .++..+++|.++.+.|+.- ++|+-+.+.. +| +++|.|+=.=|.=.|-
T Consensus 213 ~~sia--------Pa~i~~~-----~~~~A~~~a~~i~~~L~yvGVl~vE~Fv~~-dg-~llvNEiAPRvHNSGH 272 (375)
T COG0026 213 RTSIA--------PARIPDD-----LQAQAEEMAKKIAEELDYVGVLAVEFFVTP-DG-ELLVNEIAPRVHNSGH 272 (375)
T ss_pred EEEEe--------cCcCCHH-----HHHHHHHHHHHHHHHcCceEEEEEEEEEEC-CC-cEEEeeccCCCCCccc
Confidence 21111 1122211 1456789999999999987 8899999876 44 6999999888875543
No 84
>KOG0238 consensus 3-Methylcrotonyl-CoA carboxylase, biotin-containing subunit/Propionyl-CoA carboxylase, alpha chain/Acetyl-CoA carboxylase, biotin carboxylase subunit [Lipid transport and metabolism; Amino acid transport and metabolism]
Probab=98.61 E-value=1.1e-06 Score=84.98 Aligned_cols=174 Identities=16% Similarity=0.267 Sum_probs=113.5
Q ss_pred CcEEeCc-HHHHHHhcCHHHHHHHHHhccccCCCCCcc-CCCEEEEecCCCChhHHHHhcCCCCcEEEeeCcCCCCccce
Q 024006 36 EVTVLDP-PYAIQHLHNRQSMLQCVADMNLSNSYGKVD-VPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSH 113 (274)
Q Consensus 36 ~v~Vidp-~~ai~~l~dR~~~~~~L~~~~~~~~~~~I~-~P~~~~~~~~~~~~~~~l~~~~l~~P~VvKp~~a~Gs~~sh 113 (274)
++.+|-| +++|+.+-||..+-++..+. ++| +|-+--...+.+++.+ ....++||+++|+..|+ ++.
T Consensus 95 Gi~FiGP~~~aIrdMG~K~~sk~im~~A-------gVp~vpG~~g~~qs~e~~~~--~a~eIgyPvMiKa~~GG---GGk 162 (670)
T KOG0238|consen 95 GITFIGPPPSAIRDMGDKSTSKQIMKAA-------GVPLVPGYHGEDQSDEEAKK--VAREIGYPVMIKATAGG---GGK 162 (670)
T ss_pred CCeEECCCHHHHHHhcchHHHHHHHHhc-------CCccccCcccccccHHHHHH--HHHhcCCcEEEEeccCC---CCc
Confidence 5666665 57899999999888887775 666 4443222112222222 23579999999998865 367
Q ss_pred eeEEEeChhhHhcc-------------CCCeEEEecccCCCeEEEEEEECCEEE---EE-EEe-cCCCCcccccccCCce
Q 024006 114 ELSLAYDQYSLKKL-------------EPPLVLQEFVNHGGVLFKVYIVGEAIK---VV-RRF-SLPDVTKQDLSTSAGV 175 (274)
Q Consensus 114 ~m~iv~~~~~l~~l-------------~~p~vvQefI~h~g~~~KV~VIG~~v~---~~-~R~-S~p~~~~~~~~~~~g~ 175 (274)
+|.++.+++++.+. +..++++.||+ +.|-+-|-|.||+.- +- +|- |+ ...
T Consensus 163 GMria~~~~ef~~~~~~ak~Ea~~sFGdd~~llEkfi~-npRHiEvQv~gD~hGnav~l~ERdCSv--------QRR--- 230 (670)
T KOG0238|consen 163 GMRIAWSEEEFEEGLESAKQEAAKSFGDDGMLLEKFID-NPRHIEVQVFGDKHGNAVHLGERDCSV--------QRR--- 230 (670)
T ss_pred ceEeecChHHHHHHHHHHHHHHHhhcCcchhhHHHhcc-CCceEEEEEEecCCCcEEEecccccch--------hhh---
Confidence 99999999887542 55799999998 467788999999842 21 222 21 000
Q ss_pred eeecCcccccccCCcCCCCccccCCCChHHHHHHHHHHHHHhCCceeE-EeEEEeCCCCCeEEEEeccCCC
Q 024006 176 FRFPRVSCAAASADDADLDPCVAELPPRPLLERLAKELRRQLGLRLFN-LDIIREHGTRDQFYVIDINYFP 245 (274)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lA~~~~~~lGl~l~G-~Dvi~~~~~g~~~~ViDVN~fP 245 (274)
+++- -..+.-..++++ ....+.+.|.++++++|..-+| +.+|.|.+ + .+|++|.|.-=
T Consensus 231 ---nQKi--iEEaPap~l~~e-----~R~~lgeaAv~aa~avgY~~aGTVEFi~D~~-~-~FyFmEmNTRL 289 (670)
T KOG0238|consen 231 ---NQKI--IEEAPAPNLPEE-----TRRALGEAAVRAAKAVGYVGAGTVEFIVDSK-D-NFYFMEMNTRL 289 (670)
T ss_pred ---hhhh--hhcCCCCCCCHH-----HHHHHHHHHHHHHHhhCCcccceEEEEEcCC-C-cEEEEEeecee
Confidence 0000 000000011111 1346789999999999999999 99999974 4 69999999743
No 85
>PF03133 TTL: Tubulin-tyrosine ligase family; InterPro: IPR004344 Tubulins and microtubules are subjected to several post-translational modifications of which the reversible detyrosination/tyrosination of the carboxy-terminal end of most alpha-tubulins has been extensively analysed. This modification cycle involves a specific carboxypeptidase and the activity of the tubulin-tyrosine ligase (TTL) []. Tubulin-tyrosine ligase (TTL) catalyses the ATP-dependent post-translational addition of a tyrosine to the carboxy terminal end of detyrosinated alpha-tubulin. The true physiological function of TTL has so far not been established. In normally cycling cells, the tyrosinated form of tubulin predominates. However, in breast cancer cells, the detyrosinated form frequently predominates, with a correlation to tumour aggressiveness []. 3-nitrotyrosine has been shown to be incorporated, by TTL, into the carboxy terminal end of detyrosinated alpha-tubulin. This reaction is not reversible by the carboxypeptidase enzyme. Cells cultured in 3-nitrotyrosine rich medium showed evidence of altered microtubule structure and function, including altered cell morphology, epithelial barrier dysfunction, and apoptosis [].; GO: 0004835 tubulin-tyrosine ligase activity, 0006464 protein modification process; PDB: 3TII_A 3TIN_A 3TIG_A.
Probab=98.58 E-value=7.3e-08 Score=88.28 Aligned_cols=74 Identities=18% Similarity=0.326 Sum_probs=36.1
Q ss_pred cCCCEEEEecCCCChhHHHHhcCCCCcEEEeeCcCCCCccceeeEEEeChhhHhc----cCCCeEEEecccC----CCe-
Q 024006 72 DVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKK----LEPPLVLQEFVNH----GGV- 142 (274)
Q Consensus 72 ~~P~~~~~~~~~~~~~~~l~~~~l~~P~VvKp~~a~Gs~~sh~m~iv~~~~~l~~----l~~p~vvQefI~h----~g~- 142 (274)
..|.+..+..+..+....... .-.--+|+||..+ + .+.|+.++.+.+++.+ ...++|+|+||+. +|+
T Consensus 42 ~~p~t~~l~~~~~~~~~~~~~-~~~~~wI~KP~~~--~-rG~GI~l~~~~~~i~~~~~~~~~~~vvQkYI~~PlLi~grK 117 (292)
T PF03133_consen 42 FYPETFILPQDYKEFLKYFEK-NPKNLWIVKPSNG--S-RGRGIKLFNNLEQILRFSKNKNQPYVVQKYIENPLLIDGRK 117 (292)
T ss_dssp -------HHHHHHHHHHHHHT-TS---EEEEES----------EEEES-HHHHHCCHCCTTS-EEEEE--SSB--BTTB-
T ss_pred CCcceEecHHHHHHHHHHHhc-CCCCEEEEecccc--C-CCCCceecCCHHHHHHHhhhhhhhhhhhhccCCCeEEeeee
Confidence 467777774332222222221 1123599999874 3 6889999999999885 4778999999985 454
Q ss_pred -EEEEEEE
Q 024006 143 -LFKVYIV 149 (274)
Q Consensus 143 -~~KV~VI 149 (274)
|+|+||+
T Consensus 118 FDlR~yvl 125 (292)
T PF03133_consen 118 FDLRVYVL 125 (292)
T ss_dssp EEEEEEEE
T ss_pred EEEEEEEE
Confidence 8999988
No 86
>COG4770 Acetyl/propionyl-CoA carboxylase, alpha subunit [Lipid metabolism]
Probab=98.53 E-value=1e-06 Score=86.28 Aligned_cols=175 Identities=14% Similarity=0.211 Sum_probs=113.3
Q ss_pred CCcEEeCc-HHHHHHhcCHHHHHHHHHhccccCCCCCcc-CCCEEEEecCCCChhHHHHhcCCCCcEEEeeCcCCCCccc
Q 024006 35 PEVTVLDP-PYAIQHLHNRQSMLQCVADMNLSNSYGKVD-VPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKS 112 (274)
Q Consensus 35 P~v~Vidp-~~ai~~l~dR~~~~~~L~~~~~~~~~~~I~-~P~~~~~~~~~~~~~~~l~~~~l~~P~VvKp~~a~Gs~~s 112 (274)
-+++.|-| +++|+.+-||...=++..+. |+| +|-+.=...+.+.+.. ....++||+.+|...|+ ++
T Consensus 98 aGlvfIGP~~~aI~aMGdK~~AK~l~~~A-------gVp~VPG~~g~~qd~~~~~~--~A~eiGyPVlIKAsaGG---GG 165 (645)
T COG4770 98 AGLVFIGPSAGAIRAMGDKIAAKKLAAEA-------GVPTVPGYHGPIQDAAELVA--IAEEIGYPVLIKASAGG---GG 165 (645)
T ss_pred CCcEEECCCHHHHHHhccHHHHHHHHHHc-------CCCccCCCCCcccCHHHHHH--HHHhcCCcEEEEeccCC---CC
Confidence 47777765 57899999999866666664 565 4544322112111211 23468999999998764 46
Q ss_pred eeeEEEeChhhHhcc-------------CCCeEEEecccCCCeEEEEEEECCEE----EEEEEe-cCCCCcccccccCCc
Q 024006 113 HELSLAYDQYSLKKL-------------EPPLVLQEFVNHGGVLFKVYIVGEAI----KVVRRF-SLPDVTKQDLSTSAG 174 (274)
Q Consensus 113 h~m~iv~~~~~l~~l-------------~~p~vvQefI~h~g~~~KV~VIG~~v----~~~~R~-S~p~~~~~~~~~~~g 174 (274)
.+|-++.+++++.+. +..++++.|+.. -|-+-+-|+||+. +.-+|- |+ +..+
T Consensus 166 KGMRvv~~~~e~~e~l~sarrEA~asFGddrv~iEkyl~~-PRHIEiQV~aD~HGNvv~LgERdCSl--------QRRh- 235 (645)
T COG4770 166 KGMRVVETPEEFAEALESARREAKASFGDDRVFIEKYLDK-PRHIEIQVFADQHGNVVHLGERDCSL--------QRRH- 235 (645)
T ss_pred CceEeecCHHHHHHHHHHHHHHHHhhcCCceEehhhhcCC-CceEEEEEEecCCCCEEEeeccccch--------hhhc-
Confidence 799999999887542 567999999984 5667888898883 222333 32 1000
Q ss_pred eeeecCcccccccCCcCCCCccccCCCChHHHHHHHHHHHHHhCCceeE-EeEEEeCCCCCeEEEEeccCCC
Q 024006 175 VFRFPRVSCAAASADDADLDPCVAELPPRPLLERLAKELRRQLGLRLFN-LDIIREHGTRDQFYVIDINYFP 245 (274)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lA~~~~~~lGl~l~G-~Dvi~~~~~g~~~~ViDVN~fP 245 (274)
+.+- ..+...-++++. .+.|-+-|.+++++.|..=+| |-+|++.+ + .+|++|+|+-=
T Consensus 236 ----QKVI---EEAPaP~l~~~~-----R~amg~aAv~~a~avgY~gAGTVEFivd~~-~-~f~FlEMNTRL 293 (645)
T COG4770 236 ----QKVI---EEAPAPFLTEET-----REAMGEAAVAAAKAVGYVGAGTVEFIVDAD-G-NFYFLEMNTRL 293 (645)
T ss_pred ----chhh---hcCCCCCCCHHH-----HHHHHHHHHHHHHhcCCCcCceEEEEEcCC-C-cEEEEEeecce
Confidence 0000 000001122221 356789999999999999999 99999974 4 49999999643
No 87
>COG1038 PycA Pyruvate carboxylase [Energy production and conversion]
Probab=98.43 E-value=2e-06 Score=87.00 Aligned_cols=174 Identities=16% Similarity=0.244 Sum_probs=111.9
Q ss_pred CCcEEeCc-HHHHHHhcCHHHHHHHHHhccccCCCCCccC-CCEEEEecCCCChhHHHHhcCCCCcEEEeeCcCCCCccc
Q 024006 35 PEVTVLDP-PYAIQHLHNRQSMLQCVADMNLSNSYGKVDV-PRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKS 112 (274)
Q Consensus 35 P~v~Vidp-~~ai~~l~dR~~~~~~L~~~~~~~~~~~I~~-P~~~~~~~~~~~~~~~l~~~~l~~P~VvKp~~a~Gs~~s 112 (274)
-|+..|-| ++.++.+-||.+.-..-.+. ++|+ |.+--.-.+.++..+ + ..+.+||+++|-.+|+ ++
T Consensus 104 aGI~FIGP~~e~ld~~GdKv~Ar~~A~~a-------gvPvipgt~~~~~~~ee~~~-f-a~~~gyPvmiKA~~GG---GG 171 (1149)
T COG1038 104 AGITFIGPKPEVLDMLGDKVKARNAAIKA-------GVPVIPGTDGPIETIEEALE-F-AEEYGYPVMIKAAAGG---GG 171 (1149)
T ss_pred cCCEEeCCCHHHHHHhccHHHHHHHHHHc-------CCCccCCCCCCcccHHHHHH-H-HHhcCCcEEEEEccCC---Cc
Confidence 37777776 67788889998754444443 4442 221100001112222 2 2467999999998864 47
Q ss_pred eeeEEEeChhhHhcc-------------CCCeEEEecccCCCeEEEEEEECCE----EEEEEEe-cCCCCcccccccCCc
Q 024006 113 HELSLAYDQYSLKKL-------------EPPLVLQEFVNHGGVLFKVYIVGEA----IKVVRRF-SLPDVTKQDLSTSAG 174 (274)
Q Consensus 113 h~m~iv~~~~~l~~l-------------~~p~vvQefI~h~g~~~KV~VIG~~----v~~~~R~-S~p~~~~~~~~~~~g 174 (274)
+||-+|.++++|.+. +..++++.||. +.+-+-|-++||+ |+-.+|- |. ...
T Consensus 172 RGMR~vr~~~~l~~~~~~AksEAkaAFG~~eVyvEk~ve-~pkHIEVQiLgD~~GnvvHLfERDCSv--------QRR-- 240 (1149)
T COG1038 172 RGMRVVRSEADLAEAFERAKSEAKAAFGNDEVYVEKLVE-NPKHIEVQILGDTHGNVVHLFERDCSV--------QRR-- 240 (1149)
T ss_pred cceeeecCHHHHHHHHHHHHHHHHHhcCCCcEEhhhhhc-CcceeEEEEeecCCCCEEEEeecccch--------hhc--
Confidence 899999999988642 56799999998 4667899999988 3334554 32 111
Q ss_pred eeeecCcccccccCCcCCCCccccCCCChHHHHHHHHHHHHHhCCceeE-EeEEEeCCCCCeEEEEeccCC
Q 024006 175 VFRFPRVSCAAASADDADLDPCVAELPPRPLLERLAKELRRQLGLRLFN-LDIIREHGTRDQFYVIDINYF 244 (274)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lA~~~~~~lGl~l~G-~Dvi~~~~~g~~~~ViDVN~f 244 (274)
|++- -..+.-..++++. ..++-+-|.++++..|..-+| +.++++++ | ++|+||||.-
T Consensus 241 ----hQKV--VE~APa~~L~~~~-----R~~ic~~Avkla~~~~Y~~AGTvEFLvd~~-~-~fyFIEvNPR 298 (1149)
T COG1038 241 ----HQKV--VEVAPAPYLSPEL-----RDEICDDAVKLARNIGYINAGTVEFLVDED-G-KFYFIEVNPR 298 (1149)
T ss_pred ----ccee--EEecCCCCCCHHH-----HHHHHHHHHHHHHHcCCcccceEEEEEcCC-C-cEEEEEecCc
Confidence 0100 0001111233332 356778999999999999999 99999974 4 5899999953
No 88
>KOG3895 consensus Synaptic vesicle protein Synapsin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.39 E-value=6.9e-07 Score=83.01 Aligned_cols=224 Identities=13% Similarity=0.212 Sum_probs=132.9
Q ss_pred hhhhhhheeeeeccCc-----HHHHHHHHHHHHhCCCcEEeCcHHHHHHhcCHHHHHHHHHhccccCCCCCccCCCEEEE
Q 024006 5 LRTFVVSFSFLMQLTG-----KEWRQILEEYRQTHPEVTVLDPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVI 79 (274)
Q Consensus 5 ~~~~~~~~~ilHK~~~-----~~~~~~l~~y~~~~P~v~Vidp~~ai~~l~dR~~~~~~L~~~~~~~~~~~I~~P~~~~~ 79 (274)
.|+|--+|.+|-.--. .+.+.....+.-. +++.+|++.+++..+||--...-|.++..+.....+|.=.....
T Consensus 151 ~RsfkPdfVlirqhA~~mA~~~d~rslvig~qya--giP~vNSl~SvynFcdkpwvf~Qlvki~~slG~e~fPli~qt~y 228 (488)
T KOG3895|consen 151 VRSFKPDFVLIRQHAFSMALNEDYRSLVIGLQYA--GIPSVNSLTSVYNFCDKPWVFAQLVKITKSLGPEKFPLIEQTFY 228 (488)
T ss_pred eeeccCCEEEEcccchhhccccchHHHHHHHHhc--CCcccchhHHHHHhccchHHHHHHHHHHHhcCccccccceeeec
Confidence 3777778877743322 2334445555545 78999999999999999544433433222222123432222222
Q ss_pred ecCCCChhHHHHhcCCCCcEEEeeCcCCCCccceeeEEEeChhhHhcc-------CCCeEEEecccCCCeEEEEEEECCE
Q 024006 80 ERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKKL-------EPPLVLQEFVNHGGVLFKVYIVGEA 152 (274)
Q Consensus 80 ~~~~~~~~~~l~~~~l~~P~VvKp~~a~Gs~~sh~m~iv~~~~~l~~l-------~~p~vvQefI~h~g~~~KV~VIG~~ 152 (274)
... +.+. ..-.||+|||--.|+ .+-|-..|.|.++|.++ +.-.-+|.||+ .-.|+||--||..
T Consensus 229 PnH-----K~m~-s~~tyPvVVkvghah---sGmGKiKV~Nh~dfqDi~svval~~Tyat~epFiD-aKYDiriQKIG~n 298 (488)
T KOG3895|consen 229 PNH-----KEML-SQPTYPVVVKVGHAH---SGMGKIKVENHEDFQDIASVVALTKTYATAEPFID-AKYDIRIQKIGHN 298 (488)
T ss_pred CCc-----hhhc-cCCCCcEEEEecccc---cccceeeecchhhhHhHHHHHHHHhhhhhcccccc-ccceeehhhhhhh
Confidence 111 1111 234699999965553 23455677888888764 55567899997 4679999999999
Q ss_pred EEEEEEecCCCCcccccccCCceeeecCcccccccCCcCCCCccccCCCChHHHHHHHHHHHHHh-CCceeEEeEEEeCC
Q 024006 153 IKVVRRFSLPDVTKQDLSTSAGVFRFPRVSCAAASADDADLDPCVAELPPRPLLERLAKELRRQL-GLRLFNLDIIREHG 231 (274)
Q Consensus 153 v~~~~R~S~p~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lA~~~~~~l-Gl~l~G~Dvi~~~~ 231 (274)
+.+++|+|+- +.|++|.|.--...++ ..+.-+.-...+.+.+ ||+++.+|.+...
T Consensus 299 YKaymRtsIs----gnWKtNtGSamLEQIa-------------------mseRyklwvdtcse~fGgldICav~alhsK- 354 (488)
T KOG3895|consen 299 YKAYMRTSIS----GNWKTNTGSAMLEQIA-------------------MSERYKLWVDTCSEMFGGLDICAVKALHSK- 354 (488)
T ss_pred HHHHhhhhhc----cCcccCchHHHHHHHH-------------------HHHHHHHHHHHHHHhcCCcceEEeeeeecc-
Confidence 9999999974 2466554311100110 0123345556666666 5889999999875
Q ss_pred CCCeEEEEeccC--CCCCCCcc-cchHHHHHHHHHHH
Q 024006 232 TRDQFYVIDINY--FPGYGKMP-EYEHIFTDFLLSLT 265 (274)
Q Consensus 232 ~g~~~~ViDVN~--fPg~~g~~-~~~~~l~~~l~~~~ 265 (274)
+| +=||+|||- .|=+.... +-..++.+.+..++
T Consensus 355 dG-rd~i~eV~d~smpliGeh~eeDrql~~~Lvvskm 390 (488)
T KOG3895|consen 355 DG-RDYIIEVMDSSMPLIGEHQEEDRQLISELVVSKM 390 (488)
T ss_pred cc-hhheeeeccccccccccchhHHHHHHHHHHHHHh
Confidence 56 458999996 44444332 22344444444443
No 89
>PF01071 GARS_A: Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain; InterPro: IPR020561 Phosphoribosylglycinamide synthetase (6.3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: ATP + 5-phosphoribosylamine + glycine = ADP + Pi + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART. This entry represents the A-domain of the enzyme, and is related to the ATP-grasp domain of biotin carboxylase/carbamoyl phosphate synthetase.; PDB: 1GSO_A 3LP8_A 2IP4_A 1VKZ_A 2QK4_A 2XD4_A 2XCL_A 3MJF_A 2YRW_A 2YS6_A ....
Probab=98.24 E-value=2.8e-06 Score=73.87 Aligned_cols=77 Identities=18% Similarity=0.288 Sum_probs=51.6
Q ss_pred CccCCCEEEEecCCCChhHHHHhcCCCCcE-EEeeCcCCCCccceeeEEEeChhhHhc----c---------CCCeEEEe
Q 024006 70 KVDVPRQLVIERDASSIPDVVLKAGLTLPL-VAKPLVADGSAKSHELSLAYDQYSLKK----L---------EPPLVLQE 135 (274)
Q Consensus 70 ~I~~P~~~~~~~~~~~~~~~l~~~~l~~P~-VvKp~~a~Gs~~sh~m~iv~~~~~l~~----l---------~~p~vvQe 135 (274)
+|||+++.... +.+++.+.++.. .+|. |+|+. |-+.+.++.|+.+.++..+ + ..++++||
T Consensus 14 ~IPTa~~~~f~-~~~~A~~~l~~~--~~p~~ViKad---Gla~GKGV~i~~~~~eA~~~l~~~~~~~~fg~~~~~vvIEE 87 (194)
T PF01071_consen 14 GIPTAKYKVFT-DYEEALEYLEEQ--GYPYVVIKAD---GLAAGKGVVIADDREEALEALREIFVDRKFGDAGSKVVIEE 87 (194)
T ss_dssp T-SB--EEEES-SHHHHHHHHHHH--SSSEEEEEES---SSCTTTSEEEESSHHHHHHHHHHHHTSSTTCCCGSSEEEEE
T ss_pred CCCCCCeeEEC-CHHHHHHHHHhc--CCCceEEccC---CCCCCCEEEEeCCHHHHHHHHHHhccccccCCCCCcEEEEe
Confidence 89999999885 444556666554 5677 99964 4556789999999865432 1 35799999
Q ss_pred cccCCCeEEEEEEE--CCEEE
Q 024006 136 FVNHGGVLFKVYIV--GEAIK 154 (274)
Q Consensus 136 fI~h~g~~~KV~VI--G~~v~ 154 (274)
|+ .|..+.++++ |+.+.
T Consensus 88 ~l--~G~E~S~~a~~dG~~~~ 106 (194)
T PF01071_consen 88 FL--EGEEVSLFALTDGKNFV 106 (194)
T ss_dssp -----SEEEEEEEEEESSEEE
T ss_pred cc--CCeEEEEEEEEcCCeEE
Confidence 99 6999998777 66653
No 90
>KOG0369 consensus Pyruvate carboxylase [Energy production and conversion]
Probab=98.09 E-value=3.3e-05 Score=77.21 Aligned_cols=174 Identities=16% Similarity=0.266 Sum_probs=109.2
Q ss_pred CCcEEeCc-HHHHHHhcCHHHHHHHHHhccccCCCCCccC-CCEE-EEecCCCChhHHHHhcCCCCcEEEeeCcCCCCcc
Q 024006 35 PEVTVLDP-PYAIQHLHNRQSMLQCVADMNLSNSYGKVDV-PRQL-VIERDASSIPDVVLKAGLTLPLVAKPLVADGSAK 111 (274)
Q Consensus 35 P~v~Vidp-~~ai~~l~dR~~~~~~L~~~~~~~~~~~I~~-P~~~-~~~~~~~~~~~~l~~~~l~~P~VvKp~~a~Gs~~ 111 (274)
-++..|-| ++-+..+-||.+.-++-.+. |+|+ |-+- -++ ..++..+..+ ..++|+|.|...|+ +
T Consensus 130 AGi~fiGPspeVi~~mGDKv~AR~~Ai~a-------gVpvVPGTpgPit-t~~EA~eF~k--~yG~PvI~KAAyGG---G 196 (1176)
T KOG0369|consen 130 AGIRFIGPSPEVIDSMGDKVAARAIAIEA-------GVPVVPGTPGPIT-TVEEALEFVK--EYGLPVIIKAAYGG---G 196 (1176)
T ss_pred cCceEeCCCHHHHHHhhhHHHHHHHHHHc-------CCCccCCCCCCcc-cHHHHHHHHH--hcCCcEEEeecccC---C
Confidence 46777766 56778888888755554444 3431 2110 010 1123334333 46789999987754 5
Q ss_pred ceeeEEEeChhhHhcc-------------CCCeEEEecccCCCeEEEEEEECCE----EEEEEEe-cCCCCcccccccCC
Q 024006 112 SHELSLAYDQYSLKKL-------------EPPLVLQEFVNHGGVLFKVYIVGEA----IKVVRRF-SLPDVTKQDLSTSA 173 (274)
Q Consensus 112 sh~m~iv~~~~~l~~l-------------~~p~vvQefI~h~g~~~KV~VIG~~----v~~~~R~-S~p~~~~~~~~~~~ 173 (274)
+++|.++..-+++++. +..+.++.|++. -+-+-|-.+||+ ++-++|- |. ...
T Consensus 197 GRGmRvVr~~e~vee~f~Ra~SEA~aaFGnG~~FvEkF~ek-PrHIEvQllgD~~GNvvHLyERDCSv--------QRR- 266 (1176)
T KOG0369|consen 197 GRGMRVVRSGEDVEEAFQRAYSEALAAFGNGTLFVEKFLEK-PRHIEVQLLGDKHGNVVHLYERDCSV--------QRR- 266 (1176)
T ss_pred CcceEEeechhhHHHHHHHHHHHHHHhcCCceeeHHhhhcC-cceeEEEEecccCCCEEEEeecccch--------hhh-
Confidence 7899999998877542 667999999985 556788899988 3334444 21 001
Q ss_pred ceeeecCcccccccCCcCCCCccccCCCChHHHHHHHHHHHHHhCCceeE-EeEEEeCCCCCeEEEEeccCCC
Q 024006 174 GVFRFPRVSCAAASADDADLDPCVAELPPRPLLERLAKELRRQLGLRLFN-LDIIREHGTRDQFYVIDINYFP 245 (274)
Q Consensus 174 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lA~~~~~~lGl~l~G-~Dvi~~~~~g~~~~ViDVN~fP 245 (274)
|++- -..+.-..+++++ .+.+-.-|.++++..|..-+| +.+++|.. | ++|+||||.-=
T Consensus 267 -----HQKV--VEiAPA~~Lp~~v-----R~~~~~davklAk~vgY~NAGTvEFLvD~~-g-~hYFIEvN~Rl 325 (1176)
T KOG0369|consen 267 -----HQKV--VEIAPAKTLPPEV-----RDAILTDAVKLAKHVGYENAGTVEFLVDQK-G-RHYFIEVNPRL 325 (1176)
T ss_pred -----hcce--eEecccccCCHHH-----HHHHHHHHHHHHHHhCcccCCceEEEEccC-C-CEEEEEecCce
Confidence 1100 0000111233333 345667889999999999999 99999974 5 57999999643
No 91
>COG0151 PurD Phosphoribosylamine-glycine ligase [Nucleotide transport and metabolism]
Probab=97.88 E-value=0.00056 Score=65.54 Aligned_cols=180 Identities=18% Similarity=0.235 Sum_probs=99.6
Q ss_pred CCccCCCEEEEecCCCChhHHHHhcCCCCcEEEeeCcCCCCccceeeEEEeChhhHhcc-------------CCCeEEEe
Q 024006 69 GKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKKL-------------EPPLVLQE 135 (274)
Q Consensus 69 ~~I~~P~~~~~~~~~~~~~~~l~~~~l~~P~VvKp~~a~Gs~~sh~m~iv~~~~~l~~l-------------~~p~vvQe 135 (274)
.+||++.+-..+ +.+++..++.+ .+.|+|+||. |=+.+-++.|+.+.++..+. ...+|++|
T Consensus 114 ~~IPta~y~~f~-~~e~a~ayi~~--~g~piVVKad---GLaaGKGV~V~~~~eeA~~a~~~~l~~~~fg~~g~~VVIEE 187 (428)
T COG0151 114 YGIPTAEYEVFT-DPEEAKAYIDE--KGAPIVVKAD---GLAAGKGVIVAMTLEEAEAAVDEMLEGNAFGSAGARVVIEE 187 (428)
T ss_pred cCCCcccccccC-CHHHHHHHHHH--cCCCEEEecc---cccCCCCeEEcCCHHHHHHHHHHHHhhccccCCCCcEEEEe
Confidence 489999998886 55556565644 6789999973 33356689999998665431 14599999
Q ss_pred cccCCCeEEEEEEE--CCEEEEEEEecCCCCcccccccC-CceeeecCcccccccCCcCCCCccccCCCChHHHHHHHHH
Q 024006 136 FVNHGGVLFKVYIV--GEAIKVVRRFSLPDVTKQDLSTS-AGVFRFPRVSCAAASADDADLDPCVAELPPRPLLERLAKE 212 (274)
Q Consensus 136 fI~h~g~~~KV~VI--G~~v~~~~R~S~p~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lA~~ 212 (274)
|. .|..+.++++ |+.+.- +| .+.+-+.. +|.-- ++-.-.|+.+...-++++..+...++-++..+..
T Consensus 188 fL--~GeE~S~~a~~DG~~v~p-----~p--~aQDhKra~dgD~G-PNTGGMGaysp~P~~t~e~~~~~~~~Iv~ptv~g 257 (428)
T COG0151 188 FL--DGEEFSLQAFVDGKTVIP-----MP--TAQDHKRAYDGDTG-PNTGGMGAYSPAPFITDEVVERAVEEIVEPTVEG 257 (428)
T ss_pred cc--cceEEEEEEEEcCCeEEE-----Cc--cccccccccCCCCC-CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 99 5888887666 777731 22 11111110 00000 1111112222111111111000011223445566
Q ss_pred HHHHhCCceeEE---eEEEeCCCCCeEEEEeccCCCCCCC----cccchHHHHHHHHHHHHhh
Q 024006 213 LRRQLGLRLFNL---DIIREHGTRDQFYVIDINYFPGYGK----MPEYEHIFTDFLLSLTQSR 268 (274)
Q Consensus 213 ~~~~lGl~l~G~---Dvi~~~~~g~~~~ViDVN~fPg~~g----~~~~~~~l~~~l~~~~~~~ 268 (274)
+.+. |..+-|| =++.+. +| ++|||.|.-.|==. ++.....|.+.+...+..+
T Consensus 258 m~~E-G~~f~GvLy~glMlt~-~G--PkViEfN~RFGDPEtq~vL~~l~sdl~~~~~a~~~g~ 316 (428)
T COG0151 258 MAKE-GYPFRGVLYAGLMLTA-DG--PKVIEFNARFGDPETQVVLPLLESDLVELLLAAVDGK 316 (428)
T ss_pred HHHc-CCCceEEEEeEEEEcC-CC--cEEEEEecccCChhHHHHHHhccccHHHHHHHHHhCC
Confidence 6666 7777773 445554 45 79999999888222 2233455667777666653
No 92
>PF14305 ATPgrasp_TupA: TupA-like ATPgrasp
Probab=97.77 E-value=0.0043 Score=55.72 Aligned_cols=187 Identities=16% Similarity=0.222 Sum_probs=105.9
Q ss_pred cHHHHHHhcCHHHHHHHHHhccccCCCCCccCCCEEEEecCCCChhHHHHhcCCCCcEEEeeCcCCCCccceeeEEEeCh
Q 024006 42 PPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQ 121 (274)
Q Consensus 42 p~~ai~~l~dR~~~~~~L~~~~~~~~~~~I~~P~~~~~~~~~~~~~~~l~~~~l~~P~VvKp~~a~Gs~~sh~m~iv~~~ 121 (274)
.-.-...+.||+..-.-+++... ....|+..-+.++.+++ ....|.-++|+||..|||+ ..++.+.
T Consensus 11 ~~~~~~~~~DK~~VR~yv~~~~g-----~~~l~pll~v~~~~~~i----~~~~Lp~~fViK~nhgsg~-----~~i~~dk 76 (239)
T PF14305_consen 11 RNPLFTKLADKYAVREYVEEKIG-----EEYLPPLLGVYDNPDDI----DFDSLPDKFVIKPNHGSGS-----NIIVRDK 76 (239)
T ss_pred CCccceecchHHHHHHHHHHhCC-----CceECceeecCCChhhh----hhhcCCCCEEEEEecCCCc-----EEEEeCC
Confidence 33456678899998888877421 23444454443232222 2345778999999997764 3344433
Q ss_pred -----hhHh----c-----------------cCCCeEEEecccCC-C---eEEEEEEECCEEEEEEEecCCCCccccccc
Q 024006 122 -----YSLK----K-----------------LEPPLVLQEFVNHG-G---VLFKVYIVGEAIKVVRRFSLPDVTKQDLST 171 (274)
Q Consensus 122 -----~~l~----~-----------------l~~p~vvQefI~h~-g---~~~KV~VIG~~v~~~~R~S~p~~~~~~~~~ 171 (274)
+.+. . +.+-+++++|+... | .|||+||.++++....--+-.. +.-
T Consensus 77 ~~~d~~~~~~~~~~wl~~~~~~~~~E~~Y~~i~prIivE~~l~~~~~~~~~DYKf~cF~G~~~~i~v~~~r~---~~~-- 151 (239)
T PF14305_consen 77 SKLDIEEAKKKLNRWLKKDYYYQSREWHYKNIKPRIIVEELLEDEDGKIPRDYKFFCFNGKPKFIQVDSDRF---GNH-- 151 (239)
T ss_pred cccCHHHHHHHHHHHhhhccccccccccCcCCCceEEEEeccccCCCCCcceEEEEEECCEEEEEEEEeCCC---CCe--
Confidence 1111 0 14458999999975 5 6999999999755432222110 000
Q ss_pred CCceee--ecCcccccccCCcCCCCccccCCC-ChHHHHHHHHHHHHHhCCceeEEeEEEeCCCCCeEEEEeccCCCCCC
Q 024006 172 SAGVFR--FPRVSCAAASADDADLDPCVAELP-PRPLLERLAKELRRQLGLRLFNLDIIREHGTRDQFYVIDINYFPGYG 248 (274)
Q Consensus 172 ~~g~~~--~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~lA~~~~~~lGl~l~G~Dvi~~~~~g~~~~ViDVN~fPg~~ 248 (274)
...+|+ +....-.+... .....+.| .-++|.++|.++++- ..+.-||+-..+ | ++|+=|+=.+||=.
T Consensus 152 ~~~~yd~dw~~l~~~~~~~-----~~~~~~kP~~l~emi~iA~~Ls~~--f~fvRVDlY~~~--~-~iyFGElTf~p~~G 221 (239)
T PF14305_consen 152 KRNFYDRDWNRLPFRSDYP-----PDEDIPKPKNLEEMIEIAEKLSKG--FPFVRVDLYNVD--G-KIYFGELTFTPGAG 221 (239)
T ss_pred EEEEECcccCCCccccCCC-----CCCCCCCChhHHHHHHHHHHHccC--CCEEEEEEEEeC--C-cEEEEeeecCCCCc
Confidence 011121 01110000000 11111222 246788999999886 567889999864 3 58999999999966
Q ss_pred CcccchHHH
Q 024006 249 KMPEYEHIF 257 (274)
Q Consensus 249 g~~~~~~~l 257 (274)
-.+-++...
T Consensus 222 ~~~~~p~e~ 230 (239)
T PF14305_consen 222 FEPFFPPEW 230 (239)
T ss_pred CCCCCCHHH
Confidence 554444333
No 93
>KOG0370 consensus Multifunctional pyrimidine synthesis protein CAD (includes carbamoyl-phophate synthetase, aspartate transcarbamylase, and glutamine amidotransferase) [General function prediction only]
Probab=97.58 E-value=0.00025 Score=73.29 Aligned_cols=179 Identities=21% Similarity=0.305 Sum_probs=113.3
Q ss_pred CcHHHHHHhcCHHHHHHHHHhccccCCCCCccCCCEEEEecCCCChhHHHHhcCCCCcEEEeeCcCCCCccceeeEEEeC
Q 024006 41 DPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYD 120 (274)
Q Consensus 41 dp~~ai~~l~dR~~~~~~L~~~~~~~~~~~I~~P~~~~~~~~~~~~~~~l~~~~l~~P~VvKp~~a~Gs~~sh~m~iv~~ 120 (274)
-+++.|..+-||++-.+.|.++ +|..|.+-.+++ -++... .. ..++||+++.|.--- .+-.|.++++
T Consensus 1023 TsP~~ID~AEnR~kFS~~Ld~i-------~v~Qp~Wkelt~-~~eA~~-F~-~~VgYP~lvRPSYVL---SGaAMnv~~~ 1089 (1435)
T KOG0370|consen 1023 TSPEMIDSAENRFKFSRMLDSI-------GVDQPAWKELTS-LEEAKK-FA-EKVGYPVLVRPSYVL---SGAAMNVVYS 1089 (1435)
T ss_pred CChHhhhhhhhHHHHHHHHHHc-------CCCchhhhhhcc-HHHHHH-HH-HhcCCceEeccccee---cchhhhhhhc
Confidence 4678999999999999999986 888999887752 222322 22 368999999995421 1336999999
Q ss_pred hhhHhcc---------CCCeEEEecccCCCeEEEEEEECCE-EEEEEEecCCCCcccccccCCceeeecCcccccccCCc
Q 024006 121 QYSLKKL---------EPPLVLQEFVNHGGVLFKVYIVGEA-IKVVRRFSLPDVTKQDLSTSAGVFRFPRVSCAAASADD 190 (274)
Q Consensus 121 ~~~l~~l---------~~p~vvQefI~h~g~~~KV~VIG~~-v~~~~R~S~p~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 190 (274)
+++|+.. +.|+++-.||+ +++++-|=.|+.. -..+.-.|..- .+.|. |+. .+.-...+
T Consensus 1090 ~~dl~~~L~~A~~vs~dhPVVisKfie-~AkEidvDAVa~~G~~~~haiSEHv-------EnAGV---HSG-DAtlv~Pp 1157 (1435)
T KOG0370|consen 1090 ESDLKSYLEQASAVSPDHPVVISKFIE-GAKEIDVDAVASDGKVLVHAISEHV-------ENAGV---HSG-DATLVLPP 1157 (1435)
T ss_pred HHHHHHHHHHHhhcCCCCCEEhHHhhc-ccceechhhhccCCeEEEEehhhhh-------hcccc---cCC-ceeEeCCc
Confidence 9999753 67999999998 5677666444222 11122222210 01110 000 00000001
Q ss_pred CCCCccccCCCChHHHHHHHHHHHHHhCCc-eeEEeEEEeCCCCCeEEEEecc-----CCCCCCCccc
Q 024006 191 ADLDPCVAELPPRPLLERLAKELRRQLGLR-LFNLDIIREHGTRDQFYVIDIN-----YFPGYGKMPE 252 (274)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~lA~~~~~~lGl~-l~G~Dvi~~~~~g~~~~ViDVN-----~fPg~~g~~~ 252 (274)
.+++++. -+.+++++.+++++|.++ -|.+-+|..+ +++.|||.| .||-....-+
T Consensus 1158 q~l~~~t-----~~rik~i~~ki~~a~~itGPfN~Q~i~k~---n~lkVIECN~RaSRSFPFvSKtlg 1217 (1435)
T KOG0370|consen 1158 QDLSADT-----LERIKDIAAKVAKALKITGPFNMQIIAKD---NELKVIECNVRASRSFPFVSKTLG 1217 (1435)
T ss_pred hhcCHHH-----HHHHHHHHHHHHHHhcccCCceEEEEecC---CeEEEEEeeeeeeccccceehhcC
Confidence 1122211 356899999999999998 6789999853 368999999 4666555443
No 94
>TIGR01016 sucCoAbeta succinyl-CoA synthetase, beta subunit. This family contains a split seen both in a maximum parsimony tree (which ignores gaps) and in the gap pattern near position 85 of the seed alignment. Eukaryotic and most bacterial sequences are longer and contain a region similar to TXQTXXXG. Sequences from Deinococcus radiodurans, Mycobacterium tuberculosis, Streptomyces coelicolor, and the Archaea are 6 amino acids shorter in that region and contain a motif resembling [KR]G
Probab=97.30 E-value=0.0009 Score=63.95 Aligned_cols=90 Identities=20% Similarity=0.238 Sum_probs=62.0
Q ss_pred HHHHHHHHhccccCCCCCccCCCEEEEecCCCChhHHHHhcCCC-CcEEEeeCcC-CCCccceeeEEEeChhhHhcc---
Q 024006 53 QSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLT-LPLVAKPLVA-DGSAKSHELSLAYDQYSLKKL--- 127 (274)
Q Consensus 53 ~~~~~~L~~~~~~~~~~~I~~P~~~~~~~~~~~~~~~l~~~~l~-~P~VvKp~~a-~Gs~~sh~m~iv~~~~~l~~l--- 127 (274)
+.+-++|++. ||++|++.++. +.++..+.. ..++ ||+|+||..- +|...+.++.++.+++++.+.
T Consensus 6 ~~aK~ll~~~-------GIpvp~~~~~~-~~~ea~~~~--~~ig~~PvVvK~~~~~ggkg~~GGV~~~~~~~e~~~a~~~ 75 (386)
T TIGR01016 6 YQAKQIFAKY-------GIPVPRGYVAT-SVEEAEEIA--AKLGAGPVVVKAQVHAGGRGKAGGVKVAKSKEEARAAAEK 75 (386)
T ss_pred HHHHHHHHHc-------CCCCCCceeeC-CHHHHHHHH--HHhCCCcEEEEecccCCCCccCceEEEeCCHHHHHHHHHH
Confidence 4455667775 89999999885 333333323 2467 9999999721 133345689999988776431
Q ss_pred --C---------------CCeEEEecccCCCeEEEEEEECCEE
Q 024006 128 --E---------------PPLVLQEFVNHGGVLFKVYIVGEAI 153 (274)
Q Consensus 128 --~---------------~p~vvQefI~h~g~~~KV~VIG~~v 153 (274)
. ..+++|||+++ |+++-|.+++|+.
T Consensus 76 l~~~~~~~~~~~~~g~~~~~vlVEe~v~~-g~E~~v~i~~d~~ 117 (386)
T TIGR01016 76 LLGKELVTNQTDPLGQPVNKILIEEATDI-DKEYYLSIVIDRS 117 (386)
T ss_pred HhccceeecccCCCCCEeeEEEEEECccC-CceEEEEEEEcCC
Confidence 1 14899999963 8899999998863
No 95
>KOG2156 consensus Tubulin-tyrosine ligase-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.20 E-value=0.00064 Score=66.43 Aligned_cols=73 Identities=21% Similarity=0.373 Sum_probs=49.5
Q ss_pred cCCCEEEEecCCCChhHHHHhcCCCCcEEEeeCcCCCCccceeeEEEeChhhHhccCCCeEEEecccC------CCeEEE
Q 024006 72 DVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKKLEPPLVLQEFVNH------GGVLFK 145 (274)
Q Consensus 72 ~~P~~~~~~~~~~~~~~~l~~~~l~~P~VvKp~~a~Gs~~sh~m~iv~~~~~l~~l~~p~vvQefI~h------~g~~~K 145 (274)
..|++.++..|.+++.+...+..-.. +||||-. |+.+-|+.++.....+. -+.|++||+||.. +-.|++
T Consensus 282 fmPrtyilP~d~e~lrk~w~~nasr~-wIVkppa---saRg~gIrv~~kw~q~p-k~rpLvvQ~yieRP~ling~KFDlr 356 (662)
T KOG2156|consen 282 FMPRTYILPADREELRKYWEKNASRL-WIVKPPA---SARGIGIRVINKWSQFP-KDRPLVVQKYIERPLLINGSKFDLR 356 (662)
T ss_pred ccceeeeccccHHHHHHHHhhCcccc-EEecCcc---cccCcceEeccchhhCC-CcccHHHHHHhhcceeecCcceeEE
Confidence 47888888545545555554432233 8888866 34556888888777665 3679999999865 346888
Q ss_pred EEEE
Q 024006 146 VYIV 149 (274)
Q Consensus 146 V~VI 149 (274)
+||+
T Consensus 357 lYv~ 360 (662)
T KOG2156|consen 357 LYVV 360 (662)
T ss_pred EEEE
Confidence 8776
No 96
>PRK00696 sucC succinyl-CoA synthetase subunit beta; Provisional
Probab=96.99 E-value=0.0025 Score=60.92 Aligned_cols=93 Identities=18% Similarity=0.181 Sum_probs=65.0
Q ss_pred CHHHHHHHHHhccccCCCCCccCCCEEEEecCCCChhHHHHhcCC-CCcEEEeeCcC-CCCccceeeEEEeChhhHhcc-
Q 024006 51 NRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGL-TLPLVAKPLVA-DGSAKSHELSLAYDQYSLKKL- 127 (274)
Q Consensus 51 dR~~~~~~L~~~~~~~~~~~I~~P~~~~~~~~~~~~~~~l~~~~l-~~P~VvKp~~a-~Gs~~sh~m~iv~~~~~l~~l- 127 (274)
+-+.+-++|++. |||+|++.++. +.++..+.. ..+ +||+|+||..- +|.+.+.++.+..+++++.+.
T Consensus 4 ~e~~ak~lL~~~-------gIpvp~~~~~~-~~~ea~~~a--~~i~g~PvVvK~~~~~ggk~~~GGV~l~~~~~e~~~a~ 73 (388)
T PRK00696 4 HEYQAKELFAKY-------GVPVPRGIVAT-TPEEAVEAA--EELGGGVWVVKAQVHAGGRGKAGGVKLAKSPEEAREFA 73 (388)
T ss_pred CHHHHHHHHHHc-------CCCCCCCeeeC-CHHHHHHHH--HHcCCCcEEEEEeeCCCCCcccccEEEcCCHHHHHHHH
Confidence 445666777775 89999999885 333333322 246 89999999642 344567899999888776431
Q ss_pred -----C-----------C---CeEEEecccCCCeEEEEEEECCEEE
Q 024006 128 -----E-----------P---PLVLQEFVNHGGVLFKVYIVGEAIK 154 (274)
Q Consensus 128 -----~-----------~---p~vvQefI~h~g~~~KV~VIG~~v~ 154 (274)
. . .+++|+|+++ |.++-+.+..|..+
T Consensus 74 ~~i~~~~~~~~~~~~~g~~~~gvlVe~~~~~-~~E~~vg~~~D~~f 118 (388)
T PRK00696 74 KQILGMTLVTHQTGPKGQPVNKVLVEEGADI-AKEYYLSIVLDRAT 118 (388)
T ss_pred HHhhccceeeeccCCCCCEEeEEEEEeccCC-CceEEEEEEEcCCC
Confidence 1 1 2899999964 78888888877643
No 97
>PF14243 DUF4343: Domain of unknown function (DUF4343)
Probab=95.98 E-value=0.3 Score=39.76 Aligned_cols=109 Identities=18% Similarity=0.176 Sum_probs=65.7
Q ss_pred cEEEeeCcCCCCccceeeEEEeChhhHhc-----cCCCeEEEecccCCCeEEEEEEECCEEEEEEEecCCCCcccccccC
Q 024006 98 PLVAKPLVADGSAKSHELSLAYDQYSLKK-----LEPPLVLQEFVNHGGVLFKVYIVGEAIKVVRRFSLPDVTKQDLSTS 172 (274)
Q Consensus 98 P~VvKp~~a~Gs~~sh~m~iv~~~~~l~~-----l~~p~vvQefI~h~g~~~KV~VIG~~v~~~~R~S~p~~~~~~~~~~ 172 (274)
|+-+||..-. ..-.=.++...++|.. -+.++++.|.++ =..++|+||+.+++++..+-.- +
T Consensus 3 ~~FiKP~~~~---K~F~g~V~~~~~dl~~~~~~~~~~~V~vSe~v~-~~~E~R~fi~~g~vv~~s~Y~~------~---- 68 (130)
T PF14243_consen 3 PVFIKPPDDD---KSFTGRVFRSGEDLIGFGSLDPDTPVLVSEVVE-IESEWRCFIVDGEVVTGSPYRG------D---- 68 (130)
T ss_pred CeEeCCCCCC---CcceeEEEcchhhccccCCCCCCceEEEeceEe-eeeeEEEEEECCEEEEEeecCC------C----
Confidence 7788987721 2222224444555543 267899999996 4789999999999986544311 0
Q ss_pred CceeeecCcccccccCCcCCCCccccCCCChHHHHHHHHHHHH-HhCCceeEEeEEEeCCCCCeEEEEeccCCCC
Q 024006 173 AGVFRFPRVSCAAASADDADLDPCVAELPPRPLLERLAKELRR-QLGLRLFNLDIIREHGTRDQFYVIDINYFPG 246 (274)
Q Consensus 173 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lA~~~~~-~lGl~l~G~Dvi~~~~~g~~~~ViDVN~fPg 246 (274)
..+. ++.+.+......+.+ ...-..|.+|+=+.. +| ..+|||+|.+=+
T Consensus 69 ------------------~~~~------~~~~~~~~~~~~~~~~~~~p~~~vlDvg~~~-~G-~~~lVE~N~~~~ 117 (130)
T PF14243_consen 69 ------------------WDLE------PDPDVVAFAIQALAAAWTLPPAYVLDVGVTD-DG-GWALVEANDGWS 117 (130)
T ss_pred ------------------cccC------CCHHHHHHHHHHHHhcccCCCeEEEEEEEeC-CC-CEEEEEecCccc
Confidence 0000 012223333333332 445567889999875 45 589999997654
No 98
>KOG0368 consensus Acetyl-CoA carboxylase [Lipid transport and metabolism]
Probab=95.79 E-value=0.17 Score=55.32 Aligned_cols=195 Identities=14% Similarity=0.202 Sum_probs=114.2
Q ss_pred HHHHHHHhCCCcEEeCcHH-HHHHhcCHHHHHHHHHhccccC---CCCCccCCCEE------EEec---------CCCCh
Q 024006 26 ILEEYRQTHPEVTVLDPPY-AIQHLHNRQSMLQCVADMNLSN---SYGKVDVPRQL------VIER---------DASSI 86 (274)
Q Consensus 26 ~l~~y~~~~P~v~Vidp~~-ai~~l~dR~~~~~~L~~~~~~~---~~~~I~~P~~~------~~~~---------~~~~~ 86 (274)
.|-+-++.|. +..|-|+. ++.-+-||..+.-+-...+.+. ...++.++... .+.. +.++.
T Consensus 153 ~LPe~L~~~~-IiFiGPP~~aM~sLGDKI~STIvAQsa~vPtlpWSGS~v~~~~~~~~~~~v~Vpedly~Kacv~~~eeg 231 (2196)
T KOG0368|consen 153 ELPERLSANG-IIFIGPPASAMRALGDKIASTIIAQSAGVPTLPWSGSGVKVEHIEDKTNLVSVPEDLYEKACVRNVEEG 231 (2196)
T ss_pred chHHHHHhcC-cEEECCchHHHHHhcchHHHHHHHHhcCCCcccccCCcceeeeecccCCeEecCHHHhhhhhcCCHHHH
Confidence 4455556544 88888775 5677889987555544443221 11244444332 1110 11122
Q ss_pred hHHHHhcCCCCcEEEeeCcCCCCccceeeEEEeChhhHhcc---------CCCeEEEecccCCCeEEEEEEECCEEEEEE
Q 024006 87 PDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKKL---------EPPLVLQEFVNHGGVLFKVYIVGEAIKVVR 157 (274)
Q Consensus 87 ~~~l~~~~l~~P~VvKp~~a~Gs~~sh~m~iv~~~~~l~~l---------~~p~vvQefI~h~g~~~KV~VIG~~v~~~~ 157 (274)
.++ ...++||+.+|-..|+| +-|+--+.+.++++.+ +.|+.+-.-.. ++|-+-|-.++|++--+.
T Consensus 232 Lea--ae~IGfPvMIKASEGGG---GKGIRkv~n~ddF~~lf~qv~~EvPGSPIFlMK~a~-~ARHlEVQlLaDqYGn~I 305 (2196)
T KOG0368|consen 232 LEA--AEKIGFPVMIKASEGGG---GKGIRKVENEDDFKALFKQVQNEVPGSPIFLMKLAD-QARHLEVQLLADQYGNVI 305 (2196)
T ss_pred HHH--HHhcCCceEEEeccCCC---CcceeeccchHHHHHHHHHHHhhCCCCceeeeeccc-CcceeeeehhhhhcCCEe
Confidence 222 23489999999999764 4578888999998764 56887777775 477788888888862110
Q ss_pred EecCCCCcccccccCCceeeecCcccccccCCcCCCCccccCCCChHHHHHHHHHHHHHhCCceeE-EeEEEeCCCCCeE
Q 024006 158 RFSLPDVTKQDLSTSAGVFRFPRVSCAAASADDADLDPCVAELPPRPLLERLAKELRRQLGLRLFN-LDIIREHGTRDQF 236 (274)
Q Consensus 158 R~S~p~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lA~~~~~~lGl~l~G-~Dvi~~~~~g~~~ 236 (274)
--...| +.+... |++-- . ..+..+.| ....++|++.|.++++..|--=+| +..+...++| +|
T Consensus 306 sLfgRD---CSiQRR------hQKII--E-EAPatIap----~etf~~Me~~AvrLak~VGYvSAGTVEYLYsp~d~-~f 368 (2196)
T KOG0368|consen 306 SLFGRD---CSIQRR------HQKII--E-EAPATIAP----PETFKKMEQAAVRLAKLVGYVSAGTVEYLYSPDDG-EY 368 (2196)
T ss_pred Eeeccc---chHHHH------HHHHH--h-hCCcccCC----HHHHHHHHHHHHHHHHhhcceecceEEEEEecCCC-cE
Confidence 000000 000000 00000 0 00001100 001357999999999999999999 9999987676 89
Q ss_pred EEEeccCC
Q 024006 237 YVIDINYF 244 (274)
Q Consensus 237 ~ViDVN~f 244 (274)
|++|.|.-
T Consensus 369 yFLELNPR 376 (2196)
T KOG0368|consen 369 YFLELNPR 376 (2196)
T ss_pred EEEecCcc
Confidence 99999953
No 99
>PF13549 ATP-grasp_5: ATP-grasp domain; PDB: 1WR2_A.
Probab=95.39 E-value=0.015 Score=51.77 Aligned_cols=93 Identities=15% Similarity=0.188 Sum_probs=47.4
Q ss_pred hcCHHHHHHHHHhccccCCCCCccCCCEEEEecCCCChhHHHHhcCCCCcEEEeeCcC---CCCccceeeEE-EeChhhH
Q 024006 49 LHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVA---DGSAKSHELSL-AYDQYSL 124 (274)
Q Consensus 49 l~dR~~~~~~L~~~~~~~~~~~I~~P~~~~~~~~~~~~~~~l~~~~l~~P~VvKp~~a---~Gs~~sh~m~i-v~~~~~l 124 (274)
.++-..+.++|+.. ||++|++.++. +.++..+. ...++||+++|-... |=| +..++.+ +.+++++
T Consensus 9 ~L~e~e~~~lL~~y-------GI~~~~~~~~~-~~~ea~~~--a~~ig~PvvlKi~sp~i~HKs-d~GgV~L~l~~~~~v 77 (222)
T PF13549_consen 9 WLTEAEAKELLAAY-------GIPVPPTRLVT-SAEEAVAA--AEEIGFPVVLKIVSPDIAHKS-DVGGVRLNLNSPEEV 77 (222)
T ss_dssp EE-HHHHHHHHHTT-------T------EEES-SHHHHHHH--HHHH-SSEEEEEE-TT---HH-HHT-EEEEE-SHHHH
T ss_pred ccCHHHHHHHHHHc-------CcCCCCeeEeC-CHHHHHHH--HHHhCCCEEEEEecCCCCcCC-CCCcEEECCCCHHHH
Confidence 34556778888885 99999999985 32233332 235799999998754 222 3445766 6677766
Q ss_pred hcc----------------CCCeEEEecccCCCeEEEEEEECCE
Q 024006 125 KKL----------------EPPLVLQEFVNHGGVLFKVYIVGEA 152 (274)
Q Consensus 125 ~~l----------------~~p~vvQefI~h~g~~~KV~VIG~~ 152 (274)
+.. -..+++|+.++++|.++-|.+.-|-
T Consensus 78 ~~a~~~l~~~~~~~~p~~~~~gvlVq~m~~~~g~El~vG~~~Dp 121 (222)
T PF13549_consen 78 REAFERLRERVAAHHPGARIDGVLVQEMAPSGGRELIVGVRRDP 121 (222)
T ss_dssp HHHHHHHHHHHHHH-TT----EEEEEE------EEEEEEEEEET
T ss_pred HHHHHHHHHHHHHhCCCCccceEEEEEcccCCcEEEEEEEEECC
Confidence 431 1259999999877888887665444
No 100
>PF08442 ATP-grasp_2: ATP-grasp domain; InterPro: IPR013650 The ATP-grasp superfamily currently includes 17 groups of enzymes, catalyzing ATP-dependent ligation of a carboxylate containing molecule to an amino or thiol group-containing molecule []. They contribute predominantly to macromolecular synthesis. ATP-hydrolysis is used to activate a substrate. For example, DD-ligase transfers phosphate from ATP to D-alanine on the first step of catalysis. On the second step the resulting acylphosphate is attacked by a second D-alanine to produce a DD dipeptide following phosphate elimination []. The ATP-grasp domain contains three conserved motifs, corresponding to the phosphate binding loop and the Mg(2+) binding site []. The fold is characterised by two alpha-beta subdomains that grasp the ATP molecule between them. Each subdomain provides a variable loop that forms a part of the active site, completed by region of other domains not conserved between the various ATP-grasp enzymes []. The ATP-grasp domain represented by this entry is found primarily in succinyl-CoA synthetases (6.2.1.5 from EC).; PDB: 3PFF_A 3MWD_A 3MWE_A 1CQI_E 1SCU_B 2NU9_G 2NU6_E 1CQJ_E 2NU7_B 1JLL_E ....
Probab=93.47 E-value=0.23 Score=43.51 Aligned_cols=82 Identities=22% Similarity=0.331 Sum_probs=45.4
Q ss_pred HHHHHHHhccccCCCCCccCCCEEEEecCCCChhHHHHhcCCCCcEEEeeCc-CCCCccceeeEEEeChhhHhcc-----
Q 024006 54 SMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLV-ADGSAKSHELSLAYDQYSLKKL----- 127 (274)
Q Consensus 54 ~~~~~L~~~~~~~~~~~I~~P~~~~~~~~~~~~~~~l~~~~l~~P~VvKp~~-a~Gs~~sh~m~iv~~~~~l~~l----- 127 (274)
..-++|++. ||++|++.++.+ .++..+...+.+ ..++|+|+.. ++|--.+-++-++.++++..+.
T Consensus 6 qaK~ll~~~-------gi~vp~g~~a~s-~eea~~~~~~l~-~~~~VvKaQvl~GgRGK~GgVk~~~s~~ea~~~a~~ml 76 (202)
T PF08442_consen 6 QAKELLRKY-------GIPVPRGVVATS-PEEAREAAKELG-GKPLVVKAQVLAGGRGKAGGVKIAKSPEEAKEAAKEML 76 (202)
T ss_dssp HHHHHHHCT-------T----SEEEESS-HHHHHHHHHHHT-TSSEEEEE-SSSSTTTTTTCEEEESSHHHHHHHHHTTT
T ss_pred HHHHHHHHc-------CCCCCCeeecCC-HHHHHHHHHHhC-CCcEEEEEeEeecCcccCCceeecCCHHHHHHHHHHHh
Confidence 344566664 899999999963 333444343333 2378999944 3455556788899999876542
Q ss_pred ----C-----------CCeEEEecccCCCeEE
Q 024006 128 ----E-----------PPLVLQEFVNHGGVLF 144 (274)
Q Consensus 128 ----~-----------~p~vvQefI~h~g~~~ 144 (274)
. .-++++|+++|..-.|
T Consensus 77 g~~l~T~Qtg~~G~~v~~vlvee~v~~~~E~Y 108 (202)
T PF08442_consen 77 GKTLKTKQTGPKGEKVNKVLVEEFVDIKREYY 108 (202)
T ss_dssp TSEEE-TTSTTTEEEE--EEEEE---CCEEEE
T ss_pred CCceEeeecCCCCCEeeEEEEEecCccCceEE
Confidence 1 1279999998854433
No 101
>PF14403 CP_ATPgrasp_2: Circularly permuted ATP-grasp type 2
Probab=93.47 E-value=0.27 Score=48.13 Aligned_cols=106 Identities=19% Similarity=0.312 Sum_probs=63.1
Q ss_pred HHHHHHHHHhCCCcEEeCcHHHHHHhcCHHHHHHHHHh-c--c-ccCC---CCCccCCCEEEEec-------CCCChhH-
Q 024006 24 RQILEEYRQTHPEVTVLDPPYAIQHLHNRQSMLQCVAD-M--N-LSNS---YGKVDVPRQLVIER-------DASSIPD- 88 (274)
Q Consensus 24 ~~~l~~y~~~~P~v~Vidp~~ai~~l~dR~~~~~~L~~-~--~-~~~~---~~~I~~P~~~~~~~-------~~~~~~~- 88 (274)
...+++|... .+++++|+ +.+.++||.. ...|.. . . ++.. ...=.+|-|..++. ...++.+
T Consensus 258 ~~li~Ay~~~--av~~vgsf-rs~l~hnK~i-FaiL~d~~~~~~Lt~ee~~~I~~HvP~T~~l~~~~~~~~g~~~dL~~~ 333 (445)
T PF14403_consen 258 QPLIQAYRDG--AVCMVGSF-RSQLLHNKII-FAILHDERTTAFLTAEERAFIRRHVPWTRLLTAGRTTYQGEDVDLVEF 333 (445)
T ss_pred hHHHHHHhcC--CeEEecch-hhhhhhhhHH-HHHhcChhhcccCCHHHHHHHHHhCCceEEEcCccccccccchhHHHH
Confidence 3456677766 78999999 5567788864 333321 0 0 1100 01124888988854 1222322
Q ss_pred HHHhcCCCCcEEEeeCcCCCCccceeeEEE--eChhhHhc-----cCCCeEEEecccC
Q 024006 89 VVLKAGLTLPLVAKPLVADGSAKSHELSLA--YDQYSLKK-----LEPPLVLQEFVNH 139 (274)
Q Consensus 89 ~l~~~~l~~P~VvKp~~a~Gs~~sh~m~iv--~~~~~l~~-----l~~p~vvQefI~h 139 (274)
.+.... -+|+||..+. +||||++= .++++++. ++.|+|+|||+.-
T Consensus 334 ~~a~r~---~lVLKP~D~Y---gg~GV~~G~e~~~eeW~~~l~~a~~~~yilQe~v~~ 385 (445)
T PF14403_consen 334 AIANRD---RLVLKPNDEY---GGKGVYIGWETSPEEWEAALEEAAREPYILQEYVRP 385 (445)
T ss_pred HHhchh---cEEecccccc---CCCCeEECCcCCHHHHHHHHHHHhcCCcEEEEEecC
Confidence 233333 7999999976 45677653 44455543 4779999999975
No 102
>PF07065 D123: D123; InterPro: IPR009772 This family contains a number of eukaryotic D123 proteins approximately 330 residues long. It has been shown that mutated variants of D123 exhibit temperature-dependent differences in their degradation rate [].
Probab=93.24 E-value=0.42 Score=44.43 Aligned_cols=92 Identities=16% Similarity=0.349 Sum_probs=62.4
Q ss_pred eEEEecccC-CCeEEEEEEECCEEEEEEEecCCCCcccccccCCceeeecCcccccccCCcCCCCccccCCCChHHHHHH
Q 024006 131 LVLQEFVNH-GGVLFKVYIVGEAIKVVRRFSLPDVTKQDLSTSAGVFRFPRVSCAAASADDADLDPCVAELPPRPLLERL 209 (274)
Q Consensus 131 ~vvQefI~h-~g~~~KV~VIG~~v~~~~R~S~p~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 209 (274)
+++.+|++- .+..|||||-+.++++.-.|-. +. |. ... ....++ ...+.+.
T Consensus 152 LvLrkw~~l~p~~EFRcFV~~~~LiaISQr~~-~~-----------~~--~L~---------~~~~~I-----~~~I~~F 203 (299)
T PF07065_consen 152 LVLRKWVNLNPSMEFRCFVRNRKLIAISQRDL-NY-----------YD--FLE---------ELKEEI-----RSKIQEF 203 (299)
T ss_pred EEEeccccCCccceEEEEEECCEEEEEecccc-cc-----------cH--HHH---------HHHHHH-----HHHHHHH
Confidence 788999984 5999999999999988644433 21 11 000 000000 1234444
Q ss_pred H-HHHHHHhCCceeEEeEEEeCCCCCeEEEEeccCCCCCCCcc
Q 024006 210 A-KELRRQLGLRLFNLDIIREHGTRDQFYVIDINYFPGYGKMP 251 (274)
Q Consensus 210 A-~~~~~~lGl~l~G~Dvi~~~~~g~~~~ViDVN~fPg~~g~~ 251 (274)
. ..+...+.++=|-|||.++...+ +.++||+|.|-+-++--
T Consensus 204 ~~~~I~~~~~~~~~v~DVyi~~~~~-~v~LID~NPf~~~Td~l 245 (299)
T PF07065_consen 204 FEEHIKPKFPLDNYVFDVYITRDKD-KVWLIDFNPFGPRTDPL 245 (299)
T ss_pred HHHHHHhhCCCCCEEEEEEEcCCCC-eEEEEEecCCcccCccc
Confidence 4 56788899999999999987433 79999999999855443
No 103
>KOG2157 consensus Predicted tubulin-tyrosine ligase [Posttranslational modification, protein turnover, chaperones]
Probab=92.47 E-value=0.12 Score=51.05 Aligned_cols=56 Identities=13% Similarity=0.230 Sum_probs=42.4
Q ss_pred CCCCcEEEeeCcCCCCccceeeEEEeChhhHhcc------------CCCeEEEecccCC----Ce--EEEEEEECCE
Q 024006 94 GLTLPLVAKPLVADGSAKSHELSLAYDQYSLKKL------------EPPLVLQEFVNHG----GV--LFKVYIVGEA 152 (274)
Q Consensus 94 ~l~~P~VvKp~~a~Gs~~sh~m~iv~~~~~l~~l------------~~p~vvQefI~h~----g~--~~KV~VIG~~ 152 (274)
+-..+.|+||.. .+.+.|+.++.+.+.+.+. +..+++|-||+++ |. |+|.||+=..
T Consensus 197 ~~~~~wIvKP~~---~srg~GI~~~~~l~~l~~~~~~~~~~~s~~~~~~~vv~~yi~~plli~~~KfDlR~~vlvt~ 270 (497)
T KOG2157|consen 197 SERSWWIVKPAS---KSRGRGIFLFNTLSDLQAIVDSFDSFISENNDEGYVVSAYIDRPLLIGGHKFDLRQYVLVTH 270 (497)
T ss_pred cccceEEecccc---ccccceeEEecchhhhhhhhhcccccccccccccceeeeeccCccccCCceeeeeEEEEeec
Confidence 457799999955 4578999999988876543 4568999999983 43 6688887544
No 104
>PRK14046 malate--CoA ligase subunit beta; Provisional
Probab=89.41 E-value=1.5 Score=42.20 Aligned_cols=88 Identities=13% Similarity=0.040 Sum_probs=58.0
Q ss_pred HHHHHHHhccccCCCCCccCCCEEEEecCCCChhHHHHhcCCCCc-EEEeeCc-CCCCccceeeEEEeChhhHhcc----
Q 024006 54 SMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLP-LVAKPLV-ADGSAKSHELSLAYDQYSLKKL---- 127 (274)
Q Consensus 54 ~~~~~L~~~~~~~~~~~I~~P~~~~~~~~~~~~~~~l~~~~l~~P-~VvKp~~-a~Gs~~sh~m~iv~~~~~l~~l---- 127 (274)
..-++|++. ||++|++.++. +.++..+.. ..++|| +|+|... .+|-..+.++.+..+++++.+.
T Consensus 7 eak~lL~~y-------GIpvp~~~~~~-~~~ea~~~a--~~lg~p~~VvK~qv~~g~Rgk~GGV~l~~~~~e~~~a~~~l 76 (392)
T PRK14046 7 QAKELLASF-------GVAVPRGALAY-SPEQAVYRA--RELGGWHWVVKAQIHSGARGKAGGIKLCRTYNEVRDAAEDL 76 (392)
T ss_pred HHHHHHHHc-------CCCCCCceEEC-CHHHHHHHH--HHcCCCcEEEEeeeccCCCCcCCeEEEECCHHHHHHHHHHH
Confidence 445667764 99999999885 332333322 357885 5999743 3355577888888888776532
Q ss_pred -C----------C-----CeEEEecccCCCeEEEEEEECCE
Q 024006 128 -E----------P-----PLVLQEFVNHGGVLFKVYIVGEA 152 (274)
Q Consensus 128 -~----------~-----p~vvQefI~h~g~~~KV~VIG~~ 152 (274)
+ . .+++|+++++ ++++-+-+.=|.
T Consensus 77 l~~~~~~~~~~~~g~~v~~vlVe~~~~~-~~E~ylgi~~D~ 116 (392)
T PRK14046 77 LGKKLVTHQTGPEGKPVQRVYVETADPI-ERELYLGFVLDR 116 (392)
T ss_pred hcchhhhhccCCCCCeeeeEEEEEecCC-CcEEEEEEEECC
Confidence 1 1 2899999975 667776665554
No 105
>COG1759 5-formaminoimidazole-4-carboxamide-1-beta-D-ribofuranosyl 5'-monophosphate synthetase (purine biosynthesis) [Nucleotide transport and metabolism]
Probab=87.84 E-value=0.77 Score=42.98 Aligned_cols=66 Identities=12% Similarity=0.196 Sum_probs=45.0
Q ss_pred CHHHHHHHHHhccccCCCCCccCCCEEEEecCCCChhHHHHhcCCCCcEEEeeCcCCCCccceeeEEEeChhhHhcc---
Q 024006 51 NRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKKL--- 127 (274)
Q Consensus 51 dR~~~~~~L~~~~~~~~~~~I~~P~~~~~~~~~~~~~~~l~~~~l~~P~VvKp~~a~Gs~~sh~m~iv~~~~~l~~l--- 127 (274)
||..-+..|++. ||+.|+-.. +.+ .+.-|+|||...|- ++++-.++.+.+++.+.
T Consensus 124 ~~~~~~~lLekA-------gi~~P~~~~---~Pe---------eIdr~VIVK~pgAk---ggRGyFiA~s~eef~ek~e~ 181 (361)
T COG1759 124 DRKLEYKLLEKA-------GLRIPKKYK---SPE---------EIDRPVIVKLPGAK---GGRGYFIASSPEEFYEKAER 181 (361)
T ss_pred chhhHHHHHHHc-------CCCCCcccC---ChH---------HcCCceEEecCCcc---CCceEEEEcCHHHHHHHHHH
Confidence 455566777774 888997532 121 23449999998875 48899999999887541
Q ss_pred --C---------CCeEEEeccc
Q 024006 128 --E---------PPLVLQEFVN 138 (274)
Q Consensus 128 --~---------~p~vvQefI~ 138 (274)
+ ....+||||-
T Consensus 182 l~~~gvi~~edlkna~IeEYv~ 203 (361)
T COG1759 182 LLKRGVITEEDLKNARIEEYVV 203 (361)
T ss_pred HHHcCCcchhhhhhceeeEEee
Confidence 1 1467888884
No 106
>KOG2158 consensus Tubulin-tyrosine ligase-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=86.89 E-value=0.43 Score=46.64 Aligned_cols=74 Identities=15% Similarity=0.114 Sum_probs=44.6
Q ss_pred cCCCEEEEecCCCChhHHHHhcCCCCcEEEeeCcCCCCccceeeEEEeChhhHhccCCCeEEEecccC-------CCeEE
Q 024006 72 DVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKKLEPPLVLQEFVNH-------GGVLF 144 (274)
Q Consensus 72 ~~P~~~~~~~~~~~~~~~l~~~~l~~P~VvKp~~a~Gs~~sh~m~iv~~~~~l~~l~~p~vvQefI~h-------~g~~~ 144 (274)
.-|++..+..+..++.+.-. .++-|+||||..|+ .+.+++++.+......++. .++||||-. =-.|+
T Consensus 204 fyp~sw~lPa~l~df~a~~~--~~KrtfivkpDsga---qg~giylisDir~~g~~Q~-~~vQeyV~~pLli~dkyKfd~ 277 (565)
T KOG2158|consen 204 FYPTSWRLPAPLCDFPASTE--IMKRTFIVKPDSGA---QGSGIYLISDIREKGEYQN-KKVQEYVTYPLLISDKYKFDQ 277 (565)
T ss_pred CCCccccCchHHHHHHHHHH--HhcccEEECCCCCC---CCcceeeechhhhhhHHHH-HHHHHHhcccccccccceeee
Confidence 35666555333333433222 23449999999875 4558999866655544443 678888743 23577
Q ss_pred EEEEECC
Q 024006 145 KVYIVGE 151 (274)
Q Consensus 145 KV~VIG~ 151 (274)
|||++=.
T Consensus 278 rvy~lik 284 (565)
T KOG2158|consen 278 RVYSLIK 284 (565)
T ss_pred eeeeeee
Confidence 8887743
No 107
>COG0045 SucC Succinyl-CoA synthetase, beta subunit [Energy production and conversion]
Probab=86.60 E-value=2.8 Score=40.19 Aligned_cols=87 Identities=22% Similarity=0.231 Sum_probs=56.0
Q ss_pred HHHHHHHhccccCCCCCccCCCEEEEecCCCChhHHHHhcCCCCcEEEeeCc-CCCCccceeeEEEeChhhHhcc-----
Q 024006 54 SMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLV-ADGSAKSHELSLAYDQYSLKKL----- 127 (274)
Q Consensus 54 ~~~~~L~~~~~~~~~~~I~~P~~~~~~~~~~~~~~~l~~~~l~~P~VvKp~~-a~Gs~~sh~m~iv~~~~~l~~l----- 127 (274)
..-++|.+. |||+|+..++.+. ++..+...+.+ ..|+|+|+.. ++|--.+-++-++.+.++..+.
T Consensus 7 qaKelf~~~-------GiPvp~g~v~~s~-eea~~~a~~lg-~~~~VvKaQV~aGGRGKaGGVk~~~s~~ea~~~a~~~l 77 (387)
T COG0045 7 QAKELFAKY-------GIPVPPGYVATSP-EEAEEAAKELG-GGPVVVKAQVHAGGRGKAGGVKLAKSPEEAKEAAEEIL 77 (387)
T ss_pred HHHHHHHHc-------CCCCCCceeeeCH-HHHHHHHHHhC-CCcEEEEeeeeecCccccCceEEeCCHHHHHHHHHHHh
Confidence 445567775 9999999888533 23333223322 2799999954 3344456789999999876542
Q ss_pred C----C--------CeEEEecccCCCeEEEEEEE
Q 024006 128 E----P--------PLVLQEFVNHGGVLFKVYIV 149 (274)
Q Consensus 128 ~----~--------p~vvQefI~h~g~~~KV~VI 149 (274)
. . -++++|+++|..++|=+-++
T Consensus 78 g~~~q~~~~G~~v~~vlvee~~~~~~~E~Ylsiv 111 (387)
T COG0045 78 GKNYQTDIKGEPVNKVLVEEAVDIIKKEYYLSIV 111 (387)
T ss_pred CcccccCcCCceeeEEEEEecCCCccceEEEEEE
Confidence 2 1 27999999976545554444
No 108
>KOG0237 consensus Glycinamide ribonucleotide synthetase (GARS)/Aminoimidazole ribonucleotide synthetase (AIRS) [Nucleotide transport and metabolism]
Probab=82.65 E-value=36 Score=34.77 Aligned_cols=78 Identities=17% Similarity=0.218 Sum_probs=53.7
Q ss_pred CCccCCCEEEEecCCCChhHHHHhcCCCCcEEEeeCcCCCCccceeeEEEeChhhH-hc------------cCCCeEEEe
Q 024006 69 GKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSL-KK------------LEPPLVLQE 135 (274)
Q Consensus 69 ~~I~~P~~~~~~~~~~~~~~~l~~~~l~~P~VvKp~~a~Gs~~sh~m~iv~~~~~l-~~------------l~~p~vvQe 135 (274)
.+|||-.+...+ +++++...++.. --.++|+| |+|-+-+-++.+..+.++. +. ....++++|
T Consensus 119 ~~IPTA~y~~ft-~~e~a~sfi~~~-~~~~~ViK---AdGLAAGKGViv~~~~~EA~eAv~sIl~~~~fg~AG~tvViEE 193 (788)
T KOG0237|consen 119 HNIPTAKYKTFT-DPEEAKSFIQSA-TDKALVIK---ADGLAAGKGVIVAKSKEEAFEAVDSILVKKVFGSAGKTVVIEE 193 (788)
T ss_pred cCCCcceeeeeC-CHHHHHHHHHhC-CCcceEEe---ecccccCCceEeeccHHHHHHHHHHHHhhhhhccccceEehhh
Confidence 489999998885 444454545443 24689999 6777778899998888542 21 245699999
Q ss_pred cccCCCeEEEEEEECCEE
Q 024006 136 FVNHGGVLFKVYIVGEAI 153 (274)
Q Consensus 136 fI~h~g~~~KV~VIG~~v 153 (274)
|.+ |.+..++..=|-.
T Consensus 194 ~LE--GeEvS~laftDG~ 209 (788)
T KOG0237|consen 194 LLE--GEEVSFLAFTDGY 209 (788)
T ss_pred hcC--cceEEEEEEecCc
Confidence 994 7777776664443
No 109
>PHA02117 glutathionylspermidine synthase domain-containing protein
Probab=81.45 E-value=5.8 Score=38.38 Aligned_cols=114 Identities=18% Similarity=0.251 Sum_probs=66.3
Q ss_pred CCcEEeCcHHHHHHhcCHHHHHHHHHhccccCCCCCccCCCEEEEecCCCChhHHHHhcCCCCcEEEeeCcCCCCcccee
Q 024006 35 PEVTVLDPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHE 114 (274)
Q Consensus 35 P~v~Vidp~~ai~~l~dR~~~~~~L~~~~~~~~~~~I~~P~~~~~~~~~~~~~~~l~~~~l~~P~VvKp~~a~Gs~~sh~ 114 (274)
.++.+|||+-++- +.+|.. +.+|-++-. .+ +--.|.+..- + ....+..... +-..|.||..| -++.+
T Consensus 256 ~~~~~ieP~wk~l-lsnKal-LalLW~l~p--~h-p~LLpay~~~--d-~~~~~~~~~~--~~~yV~KPi~g---REG~n 322 (397)
T PHA02117 256 SQTRFIEPAWKMM-LSNKGL-LALLYERYP--DC-PWLVPAYVED--D-FDRENLFTLE--NPKYVSKPLLS---REGNN 322 (397)
T ss_pred CCcEEechhHHhH-hccHHH-HHHHHHhcC--CC-cccccccccc--c-ccccchhccc--cCCEEeccCCC---cCCCC
Confidence 5699999996553 346643 566665421 11 2233332210 1 0010000000 11499999995 36778
Q ss_pred eEEEeChhhHhc----c-CCCeEEEecccC---CCe--EEEEEEECCEEEEE-EEecC
Q 024006 115 LSLAYDQYSLKK----L-EPPLVLQEFVNH---GGV--LFKVYIVGEAIKVV-RRFSL 161 (274)
Q Consensus 115 m~iv~~~~~l~~----l-~~p~vvQefI~h---~g~--~~KV~VIG~~v~~~-~R~S~ 161 (274)
|.|+.+...+.+ + +.++|+|+|++= +|. .+=+++|||+..+. .|.+.
T Consensus 323 V~i~~~g~~~~~~~g~y~~~~~IyQ~~~~Lp~f~g~~~~iGsw~vg~~~aGlgiRe~~ 380 (397)
T PHA02117 323 IHIFEYGGESEDTDGNYAEEPRVVQQLIEWGRFDGCYPMIGVWMVGSEAAGLCIREDD 380 (397)
T ss_pred EEEEECCeEEeccCCCCCCCCeEEEEccCCcccCCcEEEEEEEEECCEeeEEEEecCC
Confidence 999866433322 2 578999999984 333 57889999998875 77753
No 110
>PLN02235 ATP citrate (pro-S)-lyase
Probab=72.90 E-value=11 Score=36.67 Aligned_cols=71 Identities=21% Similarity=0.331 Sum_probs=44.9
Q ss_pred CCccCCCEEEE-ecCCCChhHHHHh-cCCCC-cEEEeeCcC-CCCccceeeEEEeChhhHhcc-----CC----------
Q 024006 69 GKVDVPRQLVI-ERDASSIPDVVLK-AGLTL-PLVAKPLVA-DGSAKSHELSLAYDQYSLKKL-----EP---------- 129 (274)
Q Consensus 69 ~~I~~P~~~~~-~~~~~~~~~~l~~-~~l~~-P~VvKp~~a-~Gs~~sh~m~iv~~~~~l~~l-----~~---------- 129 (274)
.||++|+..++ . +.++..+...+ ..++. ++|+|+..- +|--.+-++-++.+.++..+. +.
T Consensus 23 ~gipvP~~~v~~~-~~ee~~~~~~~~~~l~~~~~VVKaQvl~GgRGKaGGVk~~~s~~Ea~~~a~~~Lg~~l~t~g~~G~ 101 (423)
T PLN02235 23 AGIDLPIRSAQVT-ESTDFNELANKEPWLSSTKLVVKPDMLFGKRGKSGLVALNLDLAQVATFVKERLGKEVEMGGCKGP 101 (423)
T ss_pred CCCCCCCCeeccC-CHHHHHHHHHhhhhhCCCcEEEEcccccCCCcccCceEEeCCHHHHHHHHHHHhCCceEecCCCcc
Confidence 48999999888 5 33333333322 12555 469999553 344456778899999887542 11
Q ss_pred --CeEEEecccCC
Q 024006 130 --PLVLQEFVNHG 140 (274)
Q Consensus 130 --p~vvQefI~h~ 140 (274)
-++++|+++|.
T Consensus 102 v~~vLVEe~v~i~ 114 (423)
T PLN02235 102 ITTFIVEPFVPHD 114 (423)
T ss_pred EeEEEEEecCCCc
Confidence 25778888774
No 111
>COG0754 Gsp Glutathionylspermidine synthase [Amino acid transport and metabolism]
Probab=70.36 E-value=8.8 Score=36.59 Aligned_cols=121 Identities=20% Similarity=0.184 Sum_probs=65.5
Q ss_pred ccCcHHHH--HHHHHHHHhCCCcEEeCcHHHHHHhcCHHHHHHHHHhccccCCCCCccCCCEEEEecCCCChhHHHHhcC
Q 024006 17 QLTGKEWR--QILEEYRQTHPEVTVLDPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAG 94 (274)
Q Consensus 17 K~~~~~~~--~~l~~y~~~~P~v~Vidp~~ai~~l~dR~~~~~~L~~~~~~~~~~~I~~P~~~~~~~~~~~~~~~l~~~~ 94 (274)
|++.-+|+ +.+..-+ +.+++.+|+|+=.+ ++-||. ++.+|-+.- ++.+--.|.+..- +. ..+.+
T Consensus 231 KlypwE~m~~e~~~~~l-~~~~~~~lEPaWk~-ilsNK~-lLplLW~~f---PnHp~LL~t~F~~--~~--~~~~~---- 296 (387)
T COG0754 231 KLYPWEDMLREELAQNL-ENARTIFLEPAWKS-ILSNKA-LLPLLWERF---PNHPNLLPTYFEP--DD--EEKLG---- 296 (387)
T ss_pred hhcCHHHHHHHHHHHHh-cCCCcEEechhHHH-Hhcccc-HHHHHHHhC---CCCcccccccCCC--Cc--cccch----
Confidence 45544443 3333333 44899999998443 333554 466666631 1112233333222 11 11111
Q ss_pred CCCcEEEeeCcCCCCccceeeEEEeCh-hhHhcc-----CCCeEEEecccCCCeEEEE-----EEECCEEEEE
Q 024006 95 LTLPLVAKPLVADGSAKSHELSLAYDQ-YSLKKL-----EPPLVLQEFVNHGGVLFKV-----YIVGEAIKVV 156 (274)
Q Consensus 95 l~~P~VvKp~~a~Gs~~sh~m~iv~~~-~~l~~l-----~~p~vvQefI~h~g~~~KV-----~VIG~~v~~~ 156 (274)
---|.||+.| -++-++.|+.+. +.+... +.++|+|||.+-+...-+= +||||...+.
T Consensus 297 --~~yv~KPl~g---REGaNv~i~~~~~~~~~~~~G~Yg~eg~IyQe~~~Lpk~~~~Y~~vgSw~v~d~~cG~ 364 (387)
T COG0754 297 --ESYVRKPLFG---REGANVSIFEDAGKVLDKADGPYGEEGMIYQEFYPLPKFGDSYYQVGSWVVGDEACGI 364 (387)
T ss_pred --hhhhcccccc---ccCCCeeEEecCCceeecCCCCccccchhhhhhccCcccCCeeEEEEEEEECccccee
Confidence 1269999995 256689999884 444443 5578999999864322232 4556665543
No 112
>PLN00124 succinyl-CoA ligase [GDP-forming] subunit beta; Provisional
Probab=64.98 E-value=9.5 Score=37.21 Aligned_cols=62 Identities=10% Similarity=0.130 Sum_probs=37.2
Q ss_pred HHHHHHHHhccccCCCCCccCCCEEEEecCCCChhHHHHhcCC---CCcEEEeeCcC-CCCccc-------eeeEEEeCh
Q 024006 53 QSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGL---TLPLVAKPLVA-DGSAKS-------HELSLAYDQ 121 (274)
Q Consensus 53 ~~~~~~L~~~~~~~~~~~I~~P~~~~~~~~~~~~~~~l~~~~l---~~P~VvKp~~a-~Gs~~s-------h~m~iv~~~ 121 (274)
+..-++|++. ||++|+..++. +.++..+... .+ ++|+|+|...- +|--.+ -++.+..+
T Consensus 33 yqaK~LL~~~-------GIpvp~~~va~-t~eea~~aa~--~l~~~~~pvVvKaqv~~GGRGka~hKs~~~GGV~l~~~- 101 (422)
T PLN00124 33 YQGAELMSKY-------GVNVPKGAAAS-SLDEVKKALE--KMFPDEGEVVVKSQILAGGRGLGTFKNGLKGGVHIVKK- 101 (422)
T ss_pred HHHHHHHHHc-------CCCCCCceeeC-CHHHHHHHHH--HhcccCCcEEEEEEeccCCccccccccccCCeEEECCH-
Confidence 4556777775 99999999885 3323333222 34 68999999742 233222 34556655
Q ss_pred hhHh
Q 024006 122 YSLK 125 (274)
Q Consensus 122 ~~l~ 125 (274)
+++.
T Consensus 102 eea~ 105 (422)
T PLN00124 102 DKAE 105 (422)
T ss_pred HHHH
Confidence 5554
No 113
>PRK10507 bifunctional glutathionylspermidine amidase/glutathionylspermidine synthetase; Provisional
Probab=55.94 E-value=29 Score=35.61 Aligned_cols=107 Identities=18% Similarity=0.270 Sum_probs=65.4
Q ss_pred CCcEEeCcHHHHHHhcCHHHHHHHHHhccccCCCCCccCCCEEEEecCCCChhHHHHhcCCCCcEEEeeCcCCCCcccee
Q 024006 35 PEVTVLDPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHE 114 (274)
Q Consensus 35 P~v~Vidp~~ai~~l~dR~~~~~~L~~~~~~~~~~~I~~P~~~~~~~~~~~~~~~l~~~~l~~P~VvKp~~a~Gs~~sh~ 114 (274)
+.+.+|+|+-++- +.||. +|-+|.++-. .+ +--.|.+... + .. + .+-..|.||+.| -++.+
T Consensus 482 ~~~~~iEP~Wk~l-lsNKa-iLplLW~l~p--~H-p~LLpayfe~--d----~~-l----~~~~yV~KPi~G---REG~n 542 (619)
T PRK10507 482 PEVLVFEPLWTVI-PGNKA-ILPVLWSLFP--HH-RYLLDTDFTV--N----DE-L----VKTGYAVKPIAG---RCGSN 542 (619)
T ss_pred CceEEEcccHHhh-cccHH-HHHHHHHhCC--CC-cccccccccC--C----cc-c----ccCCeEeccCCC---cCCCC
Confidence 6799999996554 34654 4666666421 11 2233333211 1 11 1 112599999995 36778
Q ss_pred eEEEeCh-hhHhc----c-CCCeEEEecccC---CC--eEEEEEEECCEEEEE-EEec
Q 024006 115 LSLAYDQ-YSLKK----L-EPPLVLQEFVNH---GG--VLFKVYIVGEAIKVV-RRFS 160 (274)
Q Consensus 115 m~iv~~~-~~l~~----l-~~p~vvQefI~h---~g--~~~KV~VIG~~v~~~-~R~S 160 (274)
|.|+.+. ..+.+ + +.++|+|+|++= +| ..+=+++|||+..+. .|.+
T Consensus 543 V~i~~~~g~~~~~~~g~y~~~~~IyQ~~~~LP~f~~~~~~iGsw~vgg~~aG~giRed 600 (619)
T PRK10507 543 IDLVSHQEEVLDKTSGKFAEQKNIYQQLWCLPKVDGKYIQVCTFTVGGNYGGTCLRGD 600 (619)
T ss_pred EEEEeCCCcEeeccCCCCCCCCeEEEEeccCcccCCCEEEEEEEEECCEEEEEEEecC
Confidence 9999763 22222 2 567999999984 22 246789999998876 7765
No 114
>PF04174 CP_ATPgrasp_1: A circularly permuted ATPgrasp ; InterPro: IPR007302 This is a domain of unknown function. It sometimes occurs in combination with IPR007296 from INTERPRO) and (IPR007297 from INTERPRO).; PDB: 3N6X_A.
Probab=53.22 E-value=14 Score=34.94 Aligned_cols=27 Identities=19% Similarity=0.391 Sum_probs=18.8
Q ss_pred CCceeEEeEEEeCCCCCeEEEEeccCCCC
Q 024006 218 GLRLFNLDIIREHGTRDQFYVIDINYFPG 246 (274)
Q Consensus 218 Gl~l~G~Dvi~~~~~g~~~~ViDVN~fPg 246 (274)
-+.++|+|++++. +| +++|+|.|.-.+
T Consensus 67 ~~~~~g~Dl~r~~-dG-~w~VleDn~~~P 93 (330)
T PF04174_consen 67 RLHFYGADLVRDP-DG-RWRVLEDNTRAP 93 (330)
T ss_dssp S-SEEEEEEEE-S-SS--EEEEEEE-SS-
T ss_pred EEEEEEEeeeECC-CC-CEEEEEecCCCC
Confidence 4889999999986 56 699999996543
No 115
>COG1181 DdlA D-alanine-D-alanine ligase and related ATP-grasp enzymes [Cell envelope biogenesis, outer membrane]
Probab=51.46 E-value=1.5 Score=41.12 Aligned_cols=110 Identities=16% Similarity=0.146 Sum_probs=60.7
Q ss_pred CcEEeCcHHHHHHhcCHHHHHHHHHhccccCCCCCccCCCEEEEecCCCChhHHHHhcCCCCcEEEeeCcCCCCccceee
Q 024006 36 EVTVLDPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHEL 115 (274)
Q Consensus 36 ~v~Vidp~~ai~~l~dR~~~~~~L~~~~~~~~~~~I~~P~~~~~~~~~~~~~~~l~~~~l~~P~VvKp~~a~Gs~~sh~m 115 (274)
++.-+|.-.......++..+.+.+.+. ++..|.-.-. ..++...+.+.+ -+++|.|.||..| | +-.|
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~vvfp~lhG~-~gEDg~iqg~le-~~giPyvg~gv~~--S--a~~m 102 (317)
T COG1181 36 DVTPVDITEAGLWMLDKEVTKRVLQKA-------DVVFPVLHGP-YGEDGTIQGLLE-LLGIPYVGKGVLA--S--AGAM 102 (317)
T ss_pred eeEEEeccccceEEeccccchhhcccC-------CEEEEeCCCC-CCCCchHHHHHH-HhCCCEecCchhh--h--hhcc
Confidence 455555555666666665554444442 3333322111 122223333332 3689999999995 3 2234
Q ss_pred EEEeC-----hhhHhcc-------C--CCeEEEecccCCCeEEEEEEECCEEEEEEEec
Q 024006 116 SLAYD-----QYSLKKL-------E--PPLVLQEFVNHGGVLFKVYIVGEAIKVVRRFS 160 (274)
Q Consensus 116 ~iv~~-----~~~l~~l-------~--~p~vvQefI~h~g~~~KV~VIG~~v~~~~R~S 160 (274)
..+.. .+++... . .+.++|+|+ .|.+|++||.+++..++.=++
T Consensus 103 dk~~~K~~~~~~g~~~a~~~~~~~~~~~~~~~e~~~--~~l~~p~~Vkp~~~gSSvg~~ 159 (317)
T COG1181 103 DKIVTKRLFKAEGLPVAPYVALTRDEYSSVIVEEVE--EGLGFPLFVKPAREGSSVGRS 159 (317)
T ss_pred cHHHHHHHHHHCCCCccceeeeecccchhHHHHHhh--cccCCCEEEEcCCccceeeEE
Confidence 43333 3344332 1 356667777 588899999999988764443
No 116
>KOG2157 consensus Predicted tubulin-tyrosine ligase [Posttranslational modification, protein turnover, chaperones]
Probab=48.33 E-value=23 Score=35.30 Aligned_cols=38 Identities=16% Similarity=0.384 Sum_probs=30.3
Q ss_pred CceeEEeEEEeCCCCCeEEEEeccCCCCCCCcccchHHHH
Q 024006 219 LRLFNLDIIREHGTRDQFYVIDINYFPGYGKMPEYEHIFT 258 (274)
Q Consensus 219 l~l~G~Dvi~~~~~g~~~~ViDVN~fPg~~g~~~~~~~l~ 258 (274)
-.+||+|+++|+ .+ .+|.||||++|.++.-......+.
T Consensus 377 FElyG~DfliD~-~l-kpwLiEiNssP~~~~t~~~d~~l~ 414 (497)
T KOG2157|consen 377 FELYGFDFLIDE-AL-KPWLIEINASPDLTQTTKNDARLK 414 (497)
T ss_pred hhhhCcceeecC-CC-CeEEEEeecCCcccccchhhhHHH
Confidence 468999999997 45 689999999999988776544333
No 117
>PF14972 Mito_morph_reg: Mitochondrial morphogenesis regulator
Probab=45.97 E-value=30 Score=29.32 Aligned_cols=34 Identities=12% Similarity=0.231 Sum_probs=28.8
Q ss_pred heeeeeccCcH-----HHHHHHHHHHHhCCCcEEeCcHH
Q 024006 11 SFSFLMQLTGK-----EWRQILEEYRQTHPEVTVLDPPY 44 (274)
Q Consensus 11 ~~~ilHK~~~~-----~~~~~l~~y~~~~P~v~Vidp~~ 44 (274)
.++|||-++|- ++...|++.++...+++||.|..
T Consensus 3 ~~~vI~evYd~ena~e~FE~eLe~ALe~~~~~IVIEP~~ 41 (165)
T PF14972_consen 3 DCAVIREVYDGENAHEQFEAELERALEAKVSYIVIEPTR 41 (165)
T ss_pred cEEEEehHhcCcchHHHHHHHHHHHHHhCCCEEEECCcc
Confidence 57899999984 34569999999999999999974
No 118
>PF01725 Ham1p_like: Ham1 family; InterPro: IPR002637 This family contains the Saccharomyces cerevisiae (Baker's yeast) HAM1 protein P47119 from SWISSPROT and other hypothetical archaeal, bacterial and Caenorhabditis elegans proteins. S. cerevisiae HAM1 protects against the mutagenic effects of the base analog 6-N-hydroxylaminopurine (HAP) which can be a natural product of monooxygenase activity on adenine. HAM1 protein protects the cell from HAP, either on the level of deoxynucleoside triphosphate or the DNA level by a yet unidentified set of reactions [].; GO: 0016787 hydrolase activity; PDB: 3TQU_A 1VP2_B 3S86_D 1B78_A 2MJP_B 2Q16_A 2PYU_A 1K7K_A 2ZTI_A 2DVP_A ....
Probab=41.71 E-value=29 Score=29.87 Aligned_cols=57 Identities=25% Similarity=0.236 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHhCCceeEEeEEEeCCCCCeEEEEeccCCCC-----CCCcccchHHHHHHHHHHHHhh
Q 024006 204 PLLERLAKELRRQLGLRLFNLDIIREHGTRDQFYVIDINYFPG-----YGKMPEYEHIFTDFLLSLTQSR 268 (274)
Q Consensus 204 ~~~~~lA~~~~~~lGl~l~G~Dvi~~~~~g~~~~ViDVN~fPg-----~~g~~~~~~~l~~~l~~~~~~~ 268 (274)
+-...=|+.+++.+|.- +|.|+ +| ++|--.|.||| |-|-..-...-.+.|++.++..
T Consensus 47 enA~~KA~~~~~~~~~p-----vi~dD-SG--L~v~aL~g~PG~~s~r~~g~~~~~~~~~~~ll~~l~~~ 108 (189)
T PF01725_consen 47 ENALIKAKAAAQQLGKP-----VIADD-SG--LEVDALNGFPGVYSARFAGPEATDEEGNEKLLKLLSGL 108 (189)
T ss_dssp HHHHHHHHHHHHHHSSS-----EEEEE-EE--EEEGGGTTTBGGGHCCCC-TTS-HHHHHHHHHHHTTTS
T ss_pred HHHHHHHHHHHHHhCCC-----EEEeC-cE--EeHhhhCCCcCCceEEEecCCCCHHHHHHHHHHHhcCC
Confidence 33455668888888877 56663 66 66666999999 3333333666777888877664
No 119
>KOG2983 consensus Uncharacterized conserved protein [Function unknown]
Probab=41.04 E-value=1.2e+02 Score=28.14 Aligned_cols=86 Identities=19% Similarity=0.367 Sum_probs=52.4
Q ss_pred eEEEeccc-CCCeEEEEEEECCEEEEEEEecCCCCcccccccCCceeeecCcccccccCCcCCCCccccCCCChHHHHHH
Q 024006 131 LVLQEFVN-HGGVLFKVYIVGEAIKVVRRFSLPDVTKQDLSTSAGVFRFPRVSCAAASADDADLDPCVAELPPRPLLERL 209 (274)
Q Consensus 131 ~vvQefI~-h~g~~~KV~VIG~~v~~~~R~S~p~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 209 (274)
+++-+.-+ |++..|||||=.++.++...|-..|. |++ .. + ..+.++.+
T Consensus 165 LvLrkWc~l~p~~EFRcFVKsn~lvg~~QRd~tny-----------Yd~--l~---------e---------~kd~~k~l 213 (334)
T KOG2983|consen 165 LVLRKWCPLKPEMEFRCFVKSNELVGICQRDVTNY-----------YDV--LL---------E---------EKDLLKGL 213 (334)
T ss_pred hhHhhhcCCCcCceEEEEEeccceeeeeeccchhH-----------HHH--HH---------H---------HHHHHHHH
Confidence 45555555 57999999999999988655533221 110 00 0 01234444
Q ss_pred HHHHHH-----HhCCceeEEeEEEeCCCCCeEEEEeccCCCCCCC
Q 024006 210 AKELRR-----QLGLRLFNLDIIREHGTRDQFYVIDINYFPGYGK 249 (274)
Q Consensus 210 A~~~~~-----~lGl~l~G~Dvi~~~~~g~~~~ViDVN~fPg~~g 249 (274)
...+.+ .+-=.-|-||+-++.. + +.++||+|.|=|-+.
T Consensus 214 I~eff~d~i~~kF~dedfvfDVYi~k~-~-kv~lID~Npf~~~Td 256 (334)
T KOG2983|consen 214 IEEFFKDKILFKFPDEDFVFDVYITKE-R-KVWLIDFNPFCGSTD 256 (334)
T ss_pred HHHHHHhhhhccCCCCCeeEEEEecCC-C-cEEEEeccCccCccc
Confidence 433333 3444457799998864 4 789999999988444
No 120
>PF04556 DpnII: DpnII restriction endonuclease; InterPro: IPR007637 There are four classes of restriction endonucleases: types I, II,III and IV. All types of enzymes recognise specific short DNA sequences and carry out the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. They differ in their recognition sequence, subunit composition, cleavage position, and cofactor requirements [, ], as summarised below: Type I enzymes (3.1.21.3 from EC) cleave at sites remote from recognition site; require both ATP and S-adenosyl-L-methionine to function; multifunctional protein with both restriction and methylase (2.1.1.72 from EC) activities. Type II enzymes (3.1.21.4 from EC) cleave within or at short specific distances from recognition site; most require magnesium; single function (restriction) enzymes independent of methylase. Type III enzymes (3.1.21.5 from EC) cleave at sites a short distance from recognition site; require ATP (but doesn't hydrolyse it); S-adenosyl-L-methionine stimulates reaction but is not required; exists as part of a complex with a modification methylase methylase (2.1.1.72 from EC). Type IV enzymes target methylated DNA. Type II restriction endonucleases (3.1.21.4 from EC) are components of prokaryotic DNA restriction-modification mechanisms that protect the organism against invading foreign DNA. These site-specific deoxyribonucleases catalyse the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. Of the 3000 restriction endonucleases that have been characterised, most are homodimeric or tetrameric enzymes that cleave target DNA at sequence-specific sites close to the recognition site. For homodimeric enzymes, the recognition site is usually a palindromic sequence 4-8 bp in length. Most enzymes require magnesium ions as a cofactor for catalysis. Although they can vary in their mode of recognition, many restriction endonucleases share a similar structural core comprising four beta-strands and one alpha-helix, as well as a similar mechanism of cleavage, suggesting a common ancestral origin []. However, there is still considerable diversity amongst restriction endonucleases [, ]. The target site recognition process triggers large conformational changes of the enzyme and the target DNA, leading to the activation of the catalytic centres. Like other DNA binding proteins, restriction enzymes are capable of non-specific DNA binding as well, which is the prerequisite for efficient target site location by facilitated diffusion. Non-specific binding usually does not involve interactions with the bases but only with the DNA backbone []. This entry is found in type II restriction enzymes such as DpmII (3.1.21.4 from EC), which recognises the double-stranded unmethylated sequence GATC and cleave before G-1 [], where it encompasess the full length of the protein. It is also found in a number of proteins of unknown function, where it is located adjacent to a DNA adenine-specific methyltransferase domain (IPR012327 from INTERPRO).; GO: 0003677 DNA binding, 0009036 Type II site-specific deoxyribonuclease activity, 0009307 DNA restriction-modification system
Probab=37.67 E-value=48 Score=30.72 Aligned_cols=34 Identities=21% Similarity=0.604 Sum_probs=26.1
Q ss_pred HHHHHHhCCce------eEEeEEEeCCCCCeEEEEeccCCCC
Q 024006 211 KELRRQLGLRL------FNLDIIREHGTRDQFYVIDINYFPG 246 (274)
Q Consensus 211 ~~~~~~lGl~l------~G~Dvi~~~~~g~~~~ViDVN~fPg 246 (274)
..+.+.+|.++ =-||+++.. ++..|+||+|++-|
T Consensus 179 ~~i~~~~~~d~~~~k~~KrFDFvi~~--~~k~y~IE~NFY~~ 218 (286)
T PF04556_consen 179 SEIKEKWGIDLSVGKSEKRFDFVIKT--NKKIYLIETNFYGS 218 (286)
T ss_pred HHHHHHhCCcccCCCCceEEEEEEEc--CCEEEEEEEeeecC
Confidence 44556677777 459999964 34799999999988
No 121
>PF10306 FLILHELTA: Hypothetical protein FLILHELTA; InterPro: IPR018811 This entry represents a family of conserved proteins found in fungi. They contain a characteristic FL(I)LHE(L)TA sequence motif, where the bracketed residues are I, L or V. Their function is not known.
Probab=37.12 E-value=5 Score=30.41 Aligned_cols=15 Identities=27% Similarity=0.461 Sum_probs=12.8
Q ss_pred hhhhheeeeeccCcH
Q 024006 7 TFVVSFSFLMQLTGK 21 (274)
Q Consensus 7 ~~~~~~~ilHK~~~~ 21 (274)
+.++||.|||-+|-.
T Consensus 23 ShitSFlILHEiTAI 37 (86)
T PF10306_consen 23 SHITSFLILHEITAI 37 (86)
T ss_pred HHHHHHHHHHHHHHH
Confidence 578999999999963
No 122
>PF07533 BRK: BRK domain; InterPro: IPR006576 BRK is a domain of unknown function found only in the metazoa and in association with CHROMO domain (IPR000953 from INTERPRO) and DEAD/DEAH box helicase domain (IPR011545 from INTERPRO).; GO: 0005515 protein binding, 0016817 hydrolase activity, acting on acid anhydrides; PDB: 2DL6_A 2CKA_A 2V0F_A 2V0E_A 2CKC_A.
Probab=33.84 E-value=14 Score=24.58 Aligned_cols=27 Identities=37% Similarity=0.485 Sum_probs=18.0
Q ss_pred eeeeccCcH-----H--HHHHHHHHHHhCCCcEE
Q 024006 13 SFLMQLTGK-----E--WRQILEEYRQTHPEVTV 39 (274)
Q Consensus 13 ~ilHK~~~~-----~--~~~~l~~y~~~~P~v~V 39 (274)
.++|+-|+. + ..+.|.+|++.||+.-|
T Consensus 9 ~Vi~~~tGk~l~G~~AP~~~~L~~WL~~~P~y~V 42 (46)
T PF07533_consen 9 PVINRKTGKRLTGDEAPKLKELEEWLEEHPGYEV 42 (46)
T ss_dssp -EEETTTTEEE-CCCS-BCCCHHHHHHH-TTEEE
T ss_pred EeEECCCCCCcccccCcCHHHHHHHHHHCcCcee
Confidence 467777764 2 35789999999998443
No 123
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=33.05 E-value=26 Score=33.73 Aligned_cols=58 Identities=26% Similarity=0.406 Sum_probs=42.6
Q ss_pred hhhhhhhhheeeeeccCcH--HHHHHHHHHHH-hCCCcEEeCcHHHHHHh-------cCHH---HHHHHHHhc
Q 024006 3 TFLRTFVVSFSFLMQLTGK--EWRQILEEYRQ-THPEVTVLDPPYAIQHL-------HNRQ---SMLQCVADM 62 (274)
Q Consensus 3 ~~~~~~~~~~~ilHK~~~~--~~~~~l~~y~~-~~P~v~Vidp~~ai~~l-------~dR~---~~~~~L~~~ 62 (274)
||+| |+++-++||.-+. ..++.+=++.+ +-|.+++||-++||-.- -||. .|+++|.++
T Consensus 212 tFIr--vvgSElVqKYiGEGaRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~ql 282 (406)
T COG1222 212 TFIR--VVGSELVQKYIGEGARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQL 282 (406)
T ss_pred eEEE--eccHHHHHHHhccchHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhc
Confidence 5665 6778888888764 55666666665 55889999999999653 3443 688999886
No 124
>PF12058 DUF3539: Protein of unknown function (DUF3539); InterPro: IPR021926 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are about 90 amino acids in length. This protein has a conserved NHP sequence motif. ; PDB: 3N5B_B 2XKO_C 2XG8_F.
Probab=31.87 E-value=29 Score=26.31 Aligned_cols=19 Identities=37% Similarity=0.786 Sum_probs=15.7
Q ss_pred EecccCC--CeEEEEEEECCE
Q 024006 134 QEFVNHG--GVLFKVYIVGEA 152 (274)
Q Consensus 134 QefI~h~--g~~~KV~VIG~~ 152 (274)
+.|+||+ |-+|+|..+|+.
T Consensus 3 E~YLNHPtFGlLy~Vc~~~e~ 23 (88)
T PF12058_consen 3 ETYLNHPTFGLLYRVCPVDEG 23 (88)
T ss_dssp --EEEETTTEEEEEEEEECTT
T ss_pred cccccCCccchheeeeeCCCc
Confidence 6799997 999999999886
No 125
>TIGR02049 gshA_ferroox glutamate--cysteine ligase, T. ferrooxidans family. This family consists of a rare family of glutamate--cysteine ligases, demonstrated first in Thiobacillus ferrooxidans and present in a few other Proteobacteria. It is the first of two enzymes for glutathione biosynthesis. It is also called gamma-glutamylcysteine synthetase.
Probab=31.34 E-value=1.5e+02 Score=28.63 Aligned_cols=59 Identities=20% Similarity=0.214 Sum_probs=39.4
Q ss_pred cE-EEeeCcCCCCccceeeEEEeChhhHhccC----------------CCeEEEecccCCCe------EEEEEEECCEEE
Q 024006 98 PL-VAKPLVADGSAKSHELSLAYDQYSLKKLE----------------PPLVLQEFVNHGGV------LFKVYIVGEAIK 154 (274)
Q Consensus 98 P~-VvKp~~a~Gs~~sh~m~iv~~~~~l~~l~----------------~p~vvQefI~h~g~------~~KV~VIG~~v~ 154 (274)
|+ |||... |+ .+-++..+.+.+++..++ ..+++||=|...-+ +==||.||..|+
T Consensus 258 PfViVKADa--GT-YGMGImtv~~~~ev~~LNrK~RnKM~~~Keg~~V~~VIiQEGV~T~E~~~~avAEPVVYmid~~vv 334 (403)
T TIGR02049 258 PYVIVKADA--GT-YGMGIMTATSGEEVLGLNRKERNKMAKVKEGLEVSEVIIQEGVYTFEMFNEAVAEPVVYMIGRTVT 334 (403)
T ss_pred CeEEEEcCC--CC-CCceEEEecCHHHHHHhhhhhhhhcccccCCCccceEEEecCcceeeeeCCcccCceEEEECCEEe
Confidence 65 778666 34 666788888888876541 13899998765222 223788888888
Q ss_pred EE-EEe
Q 024006 155 VV-RRF 159 (274)
Q Consensus 155 ~~-~R~ 159 (274)
+. .|.
T Consensus 335 ggfYRv 340 (403)
T TIGR02049 335 GGFYRV 340 (403)
T ss_pred EEEEEe
Confidence 75 554
No 126
>PRK14676 hypothetical protein; Provisional
Probab=29.89 E-value=2.8e+02 Score=21.96 Aligned_cols=63 Identities=8% Similarity=0.052 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHhCCcee--------E-EeEEEeCCCCCeEEEEeccCCCCCCCccc-c----hHHHHHHHHHHHHhhc
Q 024006 205 LLERLAKELRRQLGLRLF--------N-LDIIREHGTRDQFYVIDINYFPGYGKMPE-Y----EHIFTDFLLSLTQSRY 269 (274)
Q Consensus 205 ~~~~lA~~~~~~lGl~l~--------G-~Dvi~~~~~g~~~~ViDVN~fPg~~g~~~-~----~~~l~~~l~~~~~~~~ 269 (274)
.-+++|.+.-+.-|..+. | +|||... |+.+++|||-+-.+|..-.. . ...+......++.+++
T Consensus 12 ~gE~~A~~~L~~~Gy~Il~rN~r~~~GEIDiIa~~--~~~lVFVEVKt~~~~g~~~eaV~~~K~~ri~~aA~~yL~~~~ 88 (117)
T PRK14676 12 TAEEAVARIYDRSGRPVAARRWRGVSGEIDLIARE--GAEVIFIEVKKSKSHAAAAARLSRRQMDRIYGAASEFLAGEP 88 (117)
T ss_pred HHHHHHHHHHHHCCCEEeeeecCCCCCeEEEEEee--CCEEEEEEEeeCCCCCChhHcCCHHHHHHHHHHHHHHHHhCC
Confidence 357788888888888764 5 9999975 34799999998666553222 1 1445555666665444
No 127
>KOG0370 consensus Multifunctional pyrimidine synthesis protein CAD (includes carbamoyl-phophate synthetase, aspartate transcarbamylase, and glutamine amidotransferase) [General function prediction only]
Probab=28.98 E-value=20 Score=38.57 Aligned_cols=172 Identities=15% Similarity=0.252 Sum_probs=84.8
Q ss_pred cHHHHHHhcCHHHHHHHHHhccccCCCCCccCCCEEEEecCCCChhHHH-HhcCCCCcEEEeeCcCCCCccceeeEEEeC
Q 024006 42 PPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVV-LKAGLTLPLVAKPLVADGSAKSHELSLAYD 120 (274)
Q Consensus 42 p~~ai~~l~dR~~~~~~L~~~~~~~~~~~I~~P~~~~~~~~~~~~~~~l-~~~~l~~P~VvKp~~a~Gs~~sh~m~iv~~ 120 (274)
|.+.+...-||..-.+.|.+. +.++-++...+ .+.+++ ....++||+|+....+-|. -+=....|
T Consensus 489 ~i~ti~ttedr~lfa~am~ei-------~e~ia~s~a~~----sie~al~aae~l~ypvivRaayalgg---lgSgfa~n 554 (1435)
T KOG0370|consen 489 PIQTIITTEDRDLFARALNEI-------NEKIAPSEAVS----TIEEALEAAERLGYPVIVRAAYALGG---LGSGFANN 554 (1435)
T ss_pred CcccceeeccHHHHHHHHHhh-------cccccchhhHh----HHHHHHHHHHhcCcHHHHHHHHHhcC---cccccccc
Confidence 556666667777666666664 33333333322 122222 2356899999998665333 12235678
Q ss_pred hhhHhcc-------CCCeEEEecccCCCe-EEEEEEECCEEEE-EEEecCCCCcccccccCCceeeecCcccccccCCcC
Q 024006 121 QYSLKKL-------EPPLVLQEFVNHGGV-LFKVYIVGEAIKV-VRRFSLPDVTKQDLSTSAGVFRFPRVSCAAASADDA 191 (274)
Q Consensus 121 ~~~l~~l-------~~p~vvQefI~h~g~-~~KV~VIG~~v~~-~~R~S~p~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 191 (274)
+++|.++ .+.++++.=+. |+ .+-.=|+-|.+-- ..-...-|+++..+.+.+...--+ ..
T Consensus 555 ~eeL~~l~~~a~a~s~QilvekSlk--GwkevEyevvrDa~~nciTvcnmen~DplgihtGdSiVvap----------sq 622 (1435)
T KOG0370|consen 555 EEELQDLAAQALALSPQILVEKSLK--GWKEVEYEVVRDAYDNCITVCNMENFDPLGIHTGDSIVVAP----------SQ 622 (1435)
T ss_pred HHHHHHHHhhccccCceeeehhhhc--cccceEEEEEeccccchhhhcCCcccCcceeeccceEEEee----------cc
Confidence 8988765 33466666553 33 2333344443311 111112233222111111110000 00
Q ss_pred CCCccccCCCChHHHHHHHHHHHHHhCCc-eeEEeEEEeCCCCCeEEEEeccCCC
Q 024006 192 DLDPCVAELPPRPLLERLAKELRRQLGLR-LFNLDIIREHGTRDQFYVIDINYFP 245 (274)
Q Consensus 192 ~~~~~~~~~~~~~~~~~lA~~~~~~lGl~-l~G~Dvi~~~~~g~~~~ViDVN~fP 245 (274)
.++.+ ....++..|.++-+.||.- =+.+-...+..+ -+|+|||||+-=
T Consensus 623 tlsd~-----ey~mlrttaikVirhlgvvGEcniQyaL~p~s-~~y~IiEVNarL 671 (1435)
T KOG0370|consen 623 TLSDE-----EYQMLRTTAIKVIRHLGVVGECNIQYALNPYS-LEYRIIEVNARL 671 (1435)
T ss_pred ccChH-----HHHHHHhcchhheeccCCcccccceeeecccc-eeEEEEEEEeEE
Confidence 11100 0234677788888888864 223555555433 379999999643
No 128
>PRK14686 hypothetical protein; Provisional
Probab=28.14 E-value=3e+02 Score=21.76 Aligned_cols=62 Identities=15% Similarity=0.253 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHhCCcee--------E-EeEEEeCCCCCeEEEEeccCCCC--CCCc-ccc----hHHHHHHHHHHHHhh
Q 024006 205 LLERLAKELRRQLGLRLF--------N-LDIIREHGTRDQFYVIDINYFPG--YGKM-PEY----EHIFTDFLLSLTQSR 268 (274)
Q Consensus 205 ~~~~lA~~~~~~lGl~l~--------G-~Dvi~~~~~g~~~~ViDVN~fPg--~~g~-~~~----~~~l~~~l~~~~~~~ 268 (274)
.-+++|.+--+..|..+. | +|||... |+.+++|||-+=.+ |..- +.. ...+......++..+
T Consensus 10 ~gE~~A~~~L~~~Gy~il~rN~r~~~GEIDlIa~~--~~~lvFVEVKtR~~~~~g~~~eaV~~~K~~rl~~aA~~yl~~~ 87 (119)
T PRK14686 10 EGEDLAVEFLIKKGYTILERNYRFQKAEIDIIAQK--GNILVIVEVKTRSSSDFGNPQDFVKPKKIQLLVKAVNHYIEDK 87 (119)
T ss_pred HHHHHHHHHHHHCCCEEEEEEecCCCCcEEEEECc--CCEEEEEEEEecCCCCCCChhHcCCHHHHHHHHHHHHHHHHhC
Confidence 457888888888888764 5 9999875 34899999998654 3321 112 144555555556443
No 129
>COG5573 Predicted nucleic-acid-binding protein, contains PIN domain [General function prediction only]
Probab=25.86 E-value=40 Score=27.71 Aligned_cols=24 Identities=21% Similarity=0.326 Sum_probs=19.0
Q ss_pred eEEeEEEeCCCCCeEEEEe-----ccCCCC
Q 024006 222 FNLDIIREHGTRDQFYVID-----INYFPG 246 (274)
Q Consensus 222 ~G~Dvi~~~~~g~~~~ViD-----VN~fPg 246 (274)
+|.|++.+++-. ...++| ||.|+|
T Consensus 112 aGa~vLySEDmQ-~gl~i~~~l~iVNPF~~ 140 (142)
T COG5573 112 AGADVLYSEDMQ-DGLVIEQQLTIVNPFRS 140 (142)
T ss_pred cCCceeechhcc-CCeeecccceEeCCCCC
Confidence 578999987655 357999 999997
No 130
>PRK14681 hypothetical protein; Provisional
Probab=25.59 E-value=1.8e+02 Score=24.46 Aligned_cols=63 Identities=16% Similarity=0.183 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHhCCcee--------E-EeEEEeCCCCCeEEEEeccCCCCCC-Cccc--c----hHHHHHHHHHHHHhh
Q 024006 205 LLERLAKELRRQLGLRLF--------N-LDIIREHGTRDQFYVIDINYFPGYG-KMPE--Y----EHIFTDFLLSLTQSR 268 (274)
Q Consensus 205 ~~~~lA~~~~~~lGl~l~--------G-~Dvi~~~~~g~~~~ViDVN~fPg~~-g~~~--~----~~~l~~~l~~~~~~~ 268 (274)
..+++|.+--+.-|..+. | +|||...+++ .+++|||-+-.+-. |.+. + ...|......|+.+.
T Consensus 48 ~gE~~Aa~~L~~~Gy~IL~rN~R~~~GEIDIIa~d~~~-~LVFVEVKtR~~~~~g~p~eaVt~~Kqrrl~raA~~yL~~~ 126 (158)
T PRK14681 48 LGEQYAAAWLEEHGWTTLSRNWHCRYGELDIVALNPEY-TIVFVEVKTRRSMHYGYPQEAVTAAKQHNLRKAACDWLLER 126 (158)
T ss_pred HHHHHHHHHHHHCCCEEEEEEEeCCCCcEEEEEEcCCc-eEEEEEEEeccCCCCCChHHcCCHHHHHHHHHHHHHHHHhC
Confidence 456788888888888764 5 9999976433 79999999865422 2221 1 245666666666543
No 131
>PRK14679 hypothetical protein; Provisional
Probab=24.67 E-value=1.6e+02 Score=23.81 Aligned_cols=63 Identities=13% Similarity=0.066 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHhCCcee--------E-EeEEEeCCCCCeEEEEeccCCCCCCCc-ccc----hHHHHHHHHHHHHhhc
Q 024006 205 LLERLAKELRRQLGLRLF--------N-LDIIREHGTRDQFYVIDINYFPGYGKM-PEY----EHIFTDFLLSLTQSRY 269 (274)
Q Consensus 205 ~~~~lA~~~~~~lGl~l~--------G-~Dvi~~~~~g~~~~ViDVN~fPg~~g~-~~~----~~~l~~~l~~~~~~~~ 269 (274)
.-+++|.+.-+.-|..+. | +|||... |+.+++|||=+-.+...- +.. ...+......|+.+..
T Consensus 20 ~gE~~A~~~L~~~Gy~Il~rN~r~~~GEIDiIa~~--~~~lVFVEVKtR~~~~~~~eaV~~~K~~ri~~aA~~yL~~~~ 96 (128)
T PRK14679 20 SAEGLALLALMLKGYRPLARRFAAAGGEIDLIVRR--GRTIAFVEVKARATLDAAATAIDARKRARFSRAARAWLARHP 96 (128)
T ss_pred HHHHHHHHHHHHCCCEEEeeeccCCCCeEEEEEEe--CCEEEEEEEEecCCCCChhhcCCHHHHHHHHHHHHHHHHhCC
Confidence 457788888888898875 5 9999975 348999999987765421 112 1555566666664443
No 132
>PRK14680 hypothetical protein; Provisional
Probab=24.54 E-value=1.5e+02 Score=24.11 Aligned_cols=62 Identities=18% Similarity=0.191 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHhCCcee--------E-EeEEEeCCCCCeEEEEeccCCCC--CCCc-ccc----hHHHHHHHHHHHHhh
Q 024006 205 LLERLAKELRRQLGLRLF--------N-LDIIREHGTRDQFYVIDINYFPG--YGKM-PEY----EHIFTDFLLSLTQSR 268 (274)
Q Consensus 205 ~~~~lA~~~~~~lGl~l~--------G-~Dvi~~~~~g~~~~ViDVN~fPg--~~g~-~~~----~~~l~~~l~~~~~~~ 268 (274)
.-+++|.+--+.-|..+. | +|||... |+.+++|||-+--+ |..- +.+ ...+......++.+.
T Consensus 11 ~gE~~A~~~L~~~Gy~Il~rN~r~~~GEIDiIa~~--~~~lVFVEVKtR~~~~~g~p~eaV~~~K~~ri~raA~~yL~~~ 88 (134)
T PRK14680 11 HGEDAAAALLQRTGHRILARNWRHGGLELDIVCED--GDTIVFVEVKTRAAHGLTSPTDALTHSKRHRLIRAARAWLAAH 88 (134)
T ss_pred HHHHHHHHHHHHCCCEEEEeecCCCCCeEEEEEEe--CCEEEEEEEEecCCCCCCChHHhCCHHHHHHHHHHHHHHHHhC
Confidence 457788888888888764 5 9999975 34799999998543 3221 111 144555556666443
No 133
>PF08886 GshA: Glutamate-cysteine ligase; InterPro: IPR011718 This entry represents a rare family of glutamate--cysteine ligases, demonstrated first in Thiobacillus ferrooxidans and present in a few other Proteobacteria []. It is the first of two enzymes for glutathione biosynthesis. It is also called gamma-glutamylcysteine synthetase.; PDB: 3K1T_A.
Probab=24.54 E-value=1.6e+02 Score=28.54 Aligned_cols=47 Identities=13% Similarity=0.238 Sum_probs=29.4
Q ss_pred ceeEEeEEEeCCCCCeEEEEeccCCCC-CCCcc-cchHHHHHHHHHHHHhhc
Q 024006 220 RLFNLDIIREHGTRDQFYVIDINYFPG-YGKMP-EYEHIFTDFLLSLTQSRY 269 (274)
Q Consensus 220 ~l~G~Dvi~~~~~g~~~~ViDVN~fPg-~~g~~-~~~~~l~~~l~~~~~~~~ 269 (274)
-+..+|+-- . |-++.=+|.|.||| |-++. ++..+..+++.+.+++-+
T Consensus 26 fY~SVDlRn-a--GfKlAPVDtNLFPaGfNNL~~~~~plavqa~~~aiek~c 74 (404)
T PF08886_consen 26 FYSSVDLRN-A--GFKLAPVDTNLFPAGFNNLNPEFLPLAVQAAMAAIEKIC 74 (404)
T ss_dssp SEEEEEEEE----SS-EEEEEEESS---GGGS-GGGHHHHHHHHHHHHHHHS
T ss_pred ceEEEEecc-c--CCccccccccCCcCcccCCCHHHHHHHHHHHHHHHHHhC
Confidence 344599654 3 34789999999998 77664 455666777777776644
No 134
>PF00764 Arginosuc_synth: Arginosuccinate synthase; InterPro: IPR001518 Argininosuccinate synthase (6.3.4.5 from EC) (AS) is a urea cycle enzyme that catalyzes the penultimate step in arginine biosynthesis: the ATP-dependent ligation of citrulline to aspartate to form argininosuccinate, AMP and pyrophosphate [, ]. In humans, a defect in the AS gene causes citrullinemia, a genetic disease characterised by severe vomiting spells and mental retardation. AS is a homotetrameric enzyme of chains of about 400 amino-acid residues. An arginine seems to be important for the enzyme's catalytic mechanism. The sequences of AS from various prokaryotes, archaebacteria and eukaryotes show significant similarity.; GO: 0004055 argininosuccinate synthase activity, 0005524 ATP binding, 0006526 arginine biosynthetic process; PDB: 1K97_A 1KP2_A 1K92_A 1KP3_A 2NZ2_A 1VL2_A 1J1Z_D 1KOR_C 1J20_D 1KH2_C ....
Probab=24.15 E-value=1.4e+02 Score=29.00 Aligned_cols=57 Identities=19% Similarity=0.184 Sum_probs=37.6
Q ss_pred heeeeeccCcHHH-HHHHHHHHH-hCCCcEEeCcHHHHHHhcCHHHHHHHHHhccccCCCCCccCCCE
Q 024006 11 SFSFLMQLTGKEW-RQILEEYRQ-THPEVTVLDPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQ 76 (274)
Q Consensus 11 ~~~ilHK~~~~~~-~~~l~~y~~-~~P~v~Vidp~~ai~~l~dR~~~~~~L~~~~~~~~~~~I~~P~~ 76 (274)
..+|.|--|++-. +-+++.+.+ ..|++.|+-|..-.... |..++..+++. ||++|.+
T Consensus 106 a~~vaHG~TgkGNDqvRFe~~~~al~P~l~viaP~Rd~~~~--R~~~i~ya~~~-------gIpv~~~ 164 (388)
T PF00764_consen 106 ADAVAHGCTGKGNDQVRFELSIRALAPELKVIAPWRDWEFS--REEEIEYAKKH-------GIPVPVT 164 (388)
T ss_dssp -SEEE----TTSSHHHHHHHHHHHHSTTSEEE-GGGHHHHH--HHHHHHHHHHT-------T----SS
T ss_pred CeEEeccCCcCCCchhHHHHHHHHhCcCCcEecccchhhhh--HHHHHHHHHHc-------CCCCCCC
Confidence 3578888887643 448887776 88999999999988877 88999999886 6777654
No 135
>PF07805 HipA_N: HipA-like N-terminal domain; InterPro: IPR012894 The members of this entry contain a region that is found towards the N terminus of the HipA protein expressed by various bacterial species (for example P23874 from SWISSPROT). This protein is known to be involved in high-frequency persistence to the lethal effects of inhibition of either DNA or peptidoglycan synthesis []. When expressed alone, it is toxic to bacterial cells [], but it is usually tightly associated with HipB [], and the HipA-HipB complex may be involved in autoregulation of the hip operon. The hip proteins may be involved in cell division control and may interact with cell division genes or their products []. ; PDB: 2WIU_C 3HZI_A 3DNT_B 3FBR_A 3DNU_A 3DNV_A.
Probab=24.01 E-value=2.4e+02 Score=20.20 Aligned_cols=36 Identities=17% Similarity=0.115 Sum_probs=23.4
Q ss_pred hHHHHHHHHHHHHHhCCceeEEeEEEeCCCCCeEEEEe
Q 024006 203 RPLLERLAKELRRQLGLRLFNLDIIREHGTRDQFYVID 240 (274)
Q Consensus 203 ~~~~~~lA~~~~~~lGl~l~G~Dvi~~~~~g~~~~ViD 240 (274)
....+.++.++++++|++..-..++...+ .++++++
T Consensus 42 ~~~nE~~~~~lA~~~Gi~v~~~~l~~~~~--~~~l~v~ 77 (81)
T PF07805_consen 42 LVENEYACMRLARAAGIPVPETRLIRFGD--RPALAVE 77 (81)
T ss_dssp HHHHHHHHHHHHHHTT-----EEEEEETT--EEEEEEE
T ss_pred hHHHHHHHHHHHHHcCCCcCceEEEEECC--eEEEEEe
Confidence 45678999999999999999999987653 2455554
No 136
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=22.53 E-value=44 Score=31.54 Aligned_cols=59 Identities=25% Similarity=0.386 Sum_probs=39.0
Q ss_pred chhhhhhhhheeeeeccCc--HHHHHHHHHHH-HhCCCcEEeCcHHHHHHhc----C---H---HHHHHHHHhc
Q 024006 2 VTFLRTFVVSFSFLMQLTG--KEWRQILEEYR-QTHPEVTVLDPPYAIQHLH----N---R---QSMLQCVADM 62 (274)
Q Consensus 2 ~~~~~~~~~~~~ilHK~~~--~~~~~~l~~y~-~~~P~v~Vidp~~ai~~l~----d---R---~~~~~~L~~~ 62 (274)
.|||| |+.+-+|+|-.+ ...++++=+-. +.-|.+++||-+++|-.=+ . | ..|+.+|.++
T Consensus 245 ATFlR--vvGseLiQkylGdGpklvRqlF~vA~e~apSIvFiDEIdAiGtKRyds~SggerEiQrtmLELLNQl 316 (440)
T KOG0726|consen 245 ATFLR--VVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQL 316 (440)
T ss_pred hhhhh--hhhHHHHHHHhccchHHHHHHHHHHHhcCCceEEeehhhhhccccccCCCccHHHHHHHHHHHHHhc
Confidence 47888 567778888875 35555444444 4668999999999985421 1 1 1467777665
No 137
>PRK14685 hypothetical protein; Provisional
Probab=22.29 E-value=1.8e+02 Score=25.00 Aligned_cols=59 Identities=15% Similarity=0.206 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHhCCcee--------E-EeEEEeCCCCCeEEEEeccCCCC--CCCc-ccc----hHHHHHHHHHHH
Q 024006 205 LLERLAKELRRQLGLRLF--------N-LDIIREHGTRDQFYVIDINYFPG--YGKM-PEY----EHIFTDFLLSLT 265 (274)
Q Consensus 205 ~~~~lA~~~~~~lGl~l~--------G-~Dvi~~~~~g~~~~ViDVN~fPg--~~g~-~~~----~~~l~~~l~~~~ 265 (274)
.-+++|..--+.-|+.+. | +|||... |+.+++|||=+--+ |..- +.+ ...|......++
T Consensus 47 ~gE~~Aa~yL~~~Gy~IL~RN~R~~~GEIDIIA~d--g~~LVFVEVKtR~~~~~g~a~eaVt~~KqrRI~raA~~yL 121 (177)
T PRK14685 47 AYESAALRWLARQGLRPLARNLRCRAGEIDLAMRD--GEVLVLVEVRARAHAGYGGAAASIGASKQGRLARAAALLL 121 (177)
T ss_pred HHHHHHHHHHHHCCCEEeEeeecCCCCcEEEEEec--CCEEEEEEEeECCCCCCCChHHcCCHHHHHHHHHHHHHHH
Confidence 457888888888888764 5 9999875 34799999987543 4432 222 144555556665
No 138
>PF11039 DUF2824: Protein of unknown function (DUF2824); InterPro: IPR022568 This family of proteins has no known function. Members of the family are found in P22-like viruses and bacteria. Some of the phage members have been annotated as head assembly proteins, but this has not been confirmed.
Probab=22.08 E-value=2.1e+02 Score=23.69 Aligned_cols=43 Identities=21% Similarity=0.279 Sum_probs=30.9
Q ss_pred CCceeEEeEEEeCCCCCeEEEEecc--CCCCCCCcccchHHHHHHHHHHHHh
Q 024006 218 GLRLFNLDIIREHGTRDQFYVIDIN--YFPGYGKMPEYEHIFTDFLLSLTQS 267 (274)
Q Consensus 218 Gl~l~G~Dvi~~~~~g~~~~ViDVN--~fPg~~g~~~~~~~l~~~l~~~~~~ 267 (274)
|+.+.||==+.+- .+.++|+- |-|||+| +.......+++|+-.
T Consensus 46 g~~l~Gi~~v~~i----~~~~vecHa~y~P~fRG---~a~~~~~~F~kwlL~ 90 (151)
T PF11039_consen 46 GGQLGGIVYVEEI----QPSVVECHAMYDPGFRG---YALEIGRLFCKWLLE 90 (151)
T ss_pred ceEEEEEEEEEEE----eeeeEEEEeeeccccch---hHHHHHHHHHHHHhc
Confidence 7888887666553 34677775 7899999 555566688888855
No 139
>PRK12497 hypothetical protein; Reviewed
Probab=22.04 E-value=1.8e+02 Score=22.96 Aligned_cols=62 Identities=16% Similarity=0.243 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHhCCcee--------E-EeEEEeCCCCCeEEEEeccCCCC--CCC-cccc----hHHHHHHHHHHHHhh
Q 024006 205 LLERLAKELRRQLGLRLF--------N-LDIIREHGTRDQFYVIDINYFPG--YGK-MPEY----EHIFTDFLLSLTQSR 268 (274)
Q Consensus 205 ~~~~lA~~~~~~lGl~l~--------G-~Dvi~~~~~g~~~~ViDVN~fPg--~~g-~~~~----~~~l~~~l~~~~~~~ 268 (274)
.-+++|.+--+..|..+. | +|||... ++.+++|||-+--+ |.. .+.. ...+......|+.+.
T Consensus 11 ~gE~~A~~~L~~~Gy~Il~rN~r~~~GEIDiIa~~--~~~lvFVEVK~R~~~~~g~~~eav~~~K~~ri~~aA~~yL~~~ 88 (119)
T PRK12497 11 AGEDLAARYLESKGLRILARNFRCRFGEIDLIARD--GDTLVFVEVKTRRSDRFGGAAEAVTPRKQRRLRRAAQLWLARH 88 (119)
T ss_pred HHHHHHHHHHHHCCCEEEcceecCCCCcEeeeEEe--CCEEEEEEEEeccCCCCCCHHHcCCHHHHHHHHHHHHHHHHhC
Confidence 356777777777787754 5 9999975 34799999998665 322 1122 145566666666555
No 140
>PHA02117 glutathionylspermidine synthase domain-containing protein
Probab=21.44 E-value=1.6e+02 Score=28.59 Aligned_cols=23 Identities=17% Similarity=0.277 Sum_probs=18.9
Q ss_pred CceeE-EeEEEeCCCCCeEEEEeccC
Q 024006 219 LRLFN-LDIIREHGTRDQFYVIDINY 243 (274)
Q Consensus 219 l~l~G-~Dvi~~~~~g~~~~ViDVN~ 243 (274)
.+++| ||+..+. +| .+.++|.|+
T Consensus 105 ~slyGRfDfa~dg-~g-~~KllE~NA 128 (397)
T PHA02117 105 WGLYGRFDLIMTP-NG-GPKMLEYNA 128 (397)
T ss_pred CcEEEEEEEEEcC-CC-CeEEEEecC
Confidence 47999 9999984 34 589999995
No 141
>PF08886 GshA: Glutamate-cysteine ligase; InterPro: IPR011718 This entry represents a rare family of glutamate--cysteine ligases, demonstrated first in Thiobacillus ferrooxidans and present in a few other Proteobacteria []. It is the first of two enzymes for glutathione biosynthesis. It is also called gamma-glutamylcysteine synthetase.; PDB: 3K1T_A.
Probab=21.06 E-value=2.9e+02 Score=26.81 Aligned_cols=59 Identities=17% Similarity=0.128 Sum_probs=35.6
Q ss_pred c-EEEeeCcCCCCccceeeEEEeChhhHhcc-----------C-----CCeEEEecccCC----C--eEEEEEEECCEEE
Q 024006 98 P-LVAKPLVADGSAKSHELSLAYDQYSLKKL-----------E-----PPLVLQEFVNHG----G--VLFKVYIVGEAIK 154 (274)
Q Consensus 98 P-~VvKp~~a~Gs~~sh~m~iv~~~~~l~~l-----------~-----~p~vvQefI~h~----g--~~~KV~VIG~~v~ 154 (274)
| +|||... |+ .+-|+..|.+.+++..+ + ..+++||=|..- + .+-=||.||.+|+
T Consensus 261 PfV~VKAD~--GT-YGMGImtV~~~~ev~~LNrK~RnKM~~~Keg~~v~~VIIQEGV~T~E~~~~avAEPVVYmid~~vv 337 (404)
T PF08886_consen 261 PFVFVKADA--GT-YGMGIMTVKSGDEVLGLNRKQRNKMSVIKEGLEVSEVIIQEGVYTFERFNDAVAEPVVYMIDRYVV 337 (404)
T ss_dssp --EEEEEE---GG-G-EEEEEESSGGGGSS--HHHHHHHH-SSSSS---EEEEEE-----EEETTEEEEEEEEEETTEEE
T ss_pred ceEEEEcCC--CC-CCceEEEecCHHHHHHHhHHHhhhhhhhcCCCccceeEEecCcchhhhhCCccccceEEEECCEEE
Confidence 5 4789766 34 67788889999988654 1 248999988752 1 2344899999988
Q ss_pred EE-EEe
Q 024006 155 VV-RRF 159 (274)
Q Consensus 155 ~~-~R~ 159 (274)
+- .|.
T Consensus 338 ggfyRv 343 (404)
T PF08886_consen 338 GGFYRV 343 (404)
T ss_dssp EEEEEE
T ss_pred EEEEEe
Confidence 75 555
No 142
>TIGR01956 NusG_myco NusG family protein. This model represents a family of Mycoplasma proteins orthologous to the bacterial transcription termination/antitermination factor NusG. These sequences from Mycoplasma are notably diverged (long branches in a Neighbor-joining phylogenetic tree) from the bacterial species. And although NusA and ribosomal protein S10 (NusE) appear to be present, NusB may be absent in Mycoplasmas calling into question whether these species have a functional Nus system including this family as a member.
Probab=20.58 E-value=2e+02 Score=26.35 Aligned_cols=62 Identities=19% Similarity=0.128 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHhCCceeEEeEEEeC-----------CC--------------------CCe---EEEEeccCCCCCCC
Q 024006 204 PLLERLAKELRRQLGLRLFNLDIIREH-----------GT--------------------RDQ---FYVIDINYFPGYGK 249 (274)
Q Consensus 204 ~~~~~lA~~~~~~lGl~l~G~Dvi~~~-----------~~--------------------g~~---~~ViDVN~fPg~~g 249 (274)
..+.+--.+-.+++|+.-+=+|+.+.. .+ | + ..+.|-|.||||==
T Consensus 13 ~kV~~~l~~kv~~~~~ed~i~~v~Vp~e~~ve~~v~e~k~~~~p~~~k~~~~~~w~~~~~g-k~~k~k~~er~~fPGYI~ 91 (258)
T TIGR01956 13 DEVIENIKAKVRALGLENYISDFKILKEREIEEKVFEPKNGQAPRSMKNTATTKWETLDET-KYKKTKISEKNKYNGYIY 91 (258)
T ss_pred HHHHHHHHHHHHhCCCccEEEEEEEeeeEEEEEEEEEeecCcccccccccccccceeccCC-ccccEEEEEeeecCcEEE
Confidence 344444455557899997777887741 11 3 3 58999999999632
Q ss_pred cccchHHHHHHHHHHHHhhc
Q 024006 250 MPEYEHIFTDFLLSLTQSRY 269 (274)
Q Consensus 250 ~~~~~~~l~~~l~~~~~~~~ 269 (274)
+.- .+.+..|..+|..+
T Consensus 92 IkM---~m~d~~W~~VRnt~ 108 (258)
T TIGR01956 92 IKM---IMTEDAWFLIRNTE 108 (258)
T ss_pred EEE---EecccHhhheecCC
Confidence 221 13444455554433
No 143
>TIGR00252 conserved hypothetical protein TIGR00252. the scores for Mycobacterium tuberculosis and Treponema pallidum are low considering the alignment
Probab=20.46 E-value=2.3e+02 Score=22.60 Aligned_cols=62 Identities=18% Similarity=0.232 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHhCCcee--------E-EeEEEeCCCCCeEEEEeccCCCC--CCCc-ccc----hHHHHHHHHHHHHhh
Q 024006 205 LLERLAKELRRQLGLRLF--------N-LDIIREHGTRDQFYVIDINYFPG--YGKM-PEY----EHIFTDFLLSLTQSR 268 (274)
Q Consensus 205 ~~~~lA~~~~~~lGl~l~--------G-~Dvi~~~~~g~~~~ViDVN~fPg--~~g~-~~~----~~~l~~~l~~~~~~~ 268 (274)
.-+++|.+--+.-|..+. | +|||... |+.+++|||-+-.+ |..- +.. ...+......++.++
T Consensus 11 ~gE~~A~~~L~~~Gy~Il~rN~r~~~GEIDiIa~~--~~~lvFVEVK~R~~~~~g~~~eaV~~~K~~ri~~aA~~yL~~~ 88 (119)
T TIGR00252 11 AGESQARAWLEQKGLKFIAANWNSPWGEIDLIMHD--TKTIAFVEVRTRSGGNYGGALLSVNARKQEKILQTANLWLASQ 88 (119)
T ss_pred HHHHHHHHHHHHCCCEEeEEEecCCCCcEEEEEee--CCEEEEEEEEecCCCCCCChHHcCCHHHHHHHHHHHHHHHHhC
Confidence 357777777777887753 5 9999975 34799999998543 3321 122 245566666666544
Done!