Query 024006
Match_columns 274
No_of_seqs 153 out of 415
Neff 6.9
Searched_HMMs 29240
Date Mon Mar 25 16:33:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024006.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/024006hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2q7d_A Inositol-tetrakisphosph 100.0 9.2E-51 3.1E-55 379.6 29.7 258 13-274 66-340 (346)
2 1z2n_X Inositol 1,3,4-trisphos 100.0 2.2E-33 7.4E-38 256.6 28.1 246 13-269 58-322 (324)
3 3t7a_A Inositol pyrophosphate 100.0 3E-31 1E-35 241.2 18.0 210 24-267 71-312 (330)
4 1i7n_A Synapsin II; synapse, p 100.0 1.9E-29 6.4E-34 232.0 19.6 221 8-269 67-307 (309)
5 2p0a_A Synapsin-3, synapsin II 100.0 2.4E-28 8.2E-33 227.5 21.1 219 11-270 87-325 (344)
6 1pk8_A RAT synapsin I; ATP bin 100.0 1.1E-27 3.7E-32 227.4 19.6 222 7-269 178-419 (422)
7 4eg0_A D-alanine--D-alanine li 99.9 2.3E-22 7.7E-27 183.9 18.1 212 11-254 69-293 (317)
8 3r5x_A D-alanine--D-alanine li 99.9 5.2E-22 1.8E-26 179.8 17.8 207 27-268 73-302 (307)
9 1uc8_A LYSX, lysine biosynthes 99.9 8.7E-22 3E-26 174.7 17.1 187 25-251 63-260 (280)
10 3se7_A VANA; alpha-beta struct 99.9 1.7E-21 6E-26 180.5 19.0 191 26-251 107-316 (346)
11 4fu0_A D-alanine--D-alanine li 99.9 6.2E-22 2.1E-26 184.5 14.2 198 26-251 114-323 (357)
12 2fb9_A D-alanine:D-alanine lig 99.9 1.3E-20 4.6E-25 173.0 21.5 188 27-251 94-296 (322)
13 3tqt_A D-alanine--D-alanine li 99.9 5E-21 1.7E-25 180.0 19.0 213 11-253 102-329 (372)
14 1iow_A DD-ligase, DDLB, D-ALA\ 99.9 6.2E-21 2.1E-25 171.8 17.7 184 36-250 80-280 (306)
15 3k3p_A D-alanine--D-alanine li 99.9 5.4E-21 1.9E-25 180.4 17.7 211 10-251 122-347 (383)
16 1ehi_A LMDDL2, D-alanine:D-lac 99.9 2.8E-20 9.5E-25 174.6 21.6 198 26-250 110-326 (377)
17 2i87_A D-alanine-D-alanine lig 99.9 2.3E-20 7.7E-25 174.0 18.5 193 27-251 105-317 (364)
18 2pvp_A D-alanine-D-alanine lig 99.9 7.2E-20 2.5E-24 171.6 22.0 205 27-267 125-346 (367)
19 1e4e_A Vancomycin/teicoplanin 99.8 3.4E-20 1.2E-24 171.3 19.0 189 27-250 108-315 (343)
20 3i12_A D-alanine-D-alanine lig 99.8 2.3E-20 8E-25 174.4 17.7 207 11-251 102-326 (364)
21 3lwb_A D-alanine--D-alanine li 99.8 1.4E-20 4.8E-25 176.7 15.3 212 10-251 112-341 (373)
22 3e5n_A D-alanine-D-alanine lig 99.8 1.9E-20 6.5E-25 176.7 16.0 197 26-251 134-345 (386)
23 3ln6_A Glutathione biosynthesi 99.8 1.2E-19 4E-24 184.2 19.4 198 41-261 474-746 (750)
24 3ln7_A Glutathione biosynthesi 99.8 5.6E-19 1.9E-23 179.1 20.4 185 44-250 482-733 (757)
25 1gsa_A Glutathione synthetase; 99.7 4.4E-17 1.5E-21 146.5 12.6 192 26-265 100-313 (316)
26 3q2o_A Phosphoribosylaminoimid 99.7 1.4E-16 4.8E-21 149.4 15.5 175 39-249 100-283 (389)
27 3ax6_A Phosphoribosylaminoimid 99.7 5.7E-16 1.9E-20 144.4 19.0 182 29-249 79-266 (380)
28 3k5i_A Phosphoribosyl-aminoimi 99.7 5.6E-16 1.9E-20 146.6 16.2 183 36-251 108-298 (403)
29 3orq_A N5-carboxyaminoimidazol 99.7 2E-15 7E-20 141.3 17.7 172 39-249 98-279 (377)
30 3aw8_A PURK, phosphoribosylami 99.7 9.1E-16 3.1E-20 142.5 15.0 175 38-250 83-268 (369)
31 3vot_A L-amino acid ligase, BL 99.7 4.6E-15 1.6E-19 140.3 19.1 173 41-252 102-298 (425)
32 4dim_A Phosphoribosylglycinami 99.7 1.4E-15 4.7E-20 142.6 14.9 178 39-252 97-287 (403)
33 3df7_A Putative ATP-grAsp supe 99.6 1.9E-15 6.6E-20 137.9 14.7 165 24-248 84-252 (305)
34 4e4t_A Phosphoribosylaminoimid 99.6 4.8E-15 1.6E-19 141.1 16.7 187 27-250 111-309 (419)
35 2pn1_A Carbamoylphosphate synt 99.6 6.1E-15 2.1E-19 134.4 15.7 178 25-248 88-276 (331)
36 3eth_A Phosphoribosylaminoimid 99.6 1.5E-14 5.2E-19 135.1 18.3 175 38-250 66-248 (355)
37 1kjq_A GART 2, phosphoribosylg 99.6 4.1E-15 1.4E-19 138.7 12.5 177 36-250 97-288 (391)
38 2z04_A Phosphoribosylaminoimid 99.6 4.7E-15 1.6E-19 137.3 12.7 171 38-251 79-261 (365)
39 2dwc_A PH0318, 433AA long hypo 99.6 5.6E-15 1.9E-19 140.1 12.9 179 36-250 105-301 (433)
40 3ouz_A Biotin carboxylase; str 99.6 3E-14 1E-18 135.8 16.5 182 29-248 97-300 (446)
41 1ulz_A Pyruvate carboxylase N- 99.6 4E-14 1.4E-18 134.9 16.5 182 29-248 92-295 (451)
42 2ip4_A PURD, phosphoribosylami 99.6 3.7E-14 1.3E-18 133.8 16.1 181 36-249 85-286 (417)
43 4ffl_A PYLC; amino acid, biosy 99.6 2.8E-14 9.5E-19 132.2 14.8 161 29-247 81-247 (363)
44 2yw2_A Phosphoribosylamine--gl 99.6 5.2E-14 1.8E-18 133.0 16.3 190 26-249 77-292 (424)
45 1vkz_A Phosphoribosylamine--gl 99.6 6.3E-14 2.2E-18 132.5 16.6 180 38-250 93-295 (412)
46 3lp8_A Phosphoribosylamine-gly 99.6 1.2E-13 4E-18 132.3 18.3 209 26-268 98-336 (442)
47 2dzd_A Pyruvate carboxylase; b 99.6 6.4E-14 2.2E-18 134.0 16.0 184 27-248 96-300 (461)
48 2r85_A PURP protein PF1517; AT 99.6 3.1E-14 1.1E-18 129.3 13.0 177 34-247 83-290 (334)
49 3mjf_A Phosphoribosylamine--gl 99.5 7.7E-14 2.6E-18 133.0 16.1 210 25-267 81-320 (431)
50 2w70_A Biotin carboxylase; lig 99.5 9.2E-14 3.1E-18 132.3 16.6 182 28-248 92-296 (449)
51 2vpq_A Acetyl-COA carboxylase; 99.5 1.1E-13 3.8E-18 131.8 17.1 184 27-248 90-296 (451)
52 2yrx_A Phosphoribosylglycinami 99.5 1.4E-13 4.8E-18 131.4 16.7 188 26-249 98-313 (451)
53 2xcl_A Phosphoribosylamine--gl 99.5 8.2E-14 2.8E-18 131.5 14.5 190 26-249 77-292 (422)
54 3glk_A Acetyl-COA carboxylase 99.5 1.2E-13 4E-18 135.7 16.0 185 28-248 141-368 (540)
55 3jrx_A Acetyl-COA carboxylase 99.5 1.4E-13 4.9E-18 136.2 16.2 186 27-248 156-384 (587)
56 3vmm_A Alanine-anticapsin liga 99.5 3.3E-13 1.1E-17 130.4 18.2 181 27-246 117-332 (474)
57 2qk4_A Trifunctional purine bi 99.5 1.9E-13 6.7E-18 130.4 14.5 190 26-249 103-319 (452)
58 1a9x_A Carbamoyl phosphate syn 99.5 7.8E-13 2.7E-17 139.0 18.7 176 36-246 112-305 (1073)
59 1a9x_A Carbamoyl phosphate syn 99.5 3.4E-13 1.1E-17 141.8 14.2 181 27-246 650-847 (1073)
60 1w96_A ACC, acetyl-coenzyme A 99.5 6.5E-13 2.2E-17 130.4 15.0 179 37-248 158-375 (554)
61 3n6r_A Propionyl-COA carboxyla 99.4 3.7E-13 1.3E-17 135.4 10.4 184 27-248 91-296 (681)
62 3u9t_A MCC alpha, methylcroton 99.4 6E-13 2E-17 133.8 10.3 183 28-247 118-321 (675)
63 2qf7_A Pyruvate carboxylase pr 99.4 1.9E-12 6.3E-17 137.0 13.3 185 27-248 110-316 (1165)
64 3hbl_A Pyruvate carboxylase; T 99.4 5.1E-12 1.7E-16 133.5 16.0 182 27-247 94-297 (1150)
65 3va7_A KLLA0E08119P; carboxyla 99.3 5.6E-12 1.9E-16 133.7 13.1 184 27-247 120-324 (1236)
66 2pbz_A Hypothetical protein; N 99.1 6.2E-10 2.1E-14 102.5 11.3 169 35-246 82-271 (320)
67 2cqy_A Propionyl-COA carboxyla 98.9 8.9E-12 3E-16 95.3 -5.5 91 46-150 3-108 (108)
68 2r7k_A 5-formaminoimidazole-4- 98.9 1.5E-08 5.3E-13 94.6 11.9 176 34-246 107-316 (361)
69 3tig_A TTL protein; ATP-grAsp, 98.6 5E-07 1.7E-11 84.8 13.0 110 37-150 62-210 (380)
70 1wr2_A Hypothetical protein PH 98.4 1.2E-07 4.2E-12 83.0 4.4 93 49-152 19-130 (238)
71 3ufx_B Succinyl-COA synthetase 97.7 7.4E-05 2.5E-09 70.5 8.4 91 52-153 5-109 (397)
72 2nu8_B SCS-beta, succinyl-COA 97.7 7.3E-05 2.5E-09 70.3 7.5 93 50-153 3-117 (388)
73 2fp4_B Succinyl-COA ligase [GD 97.4 0.00027 9.2E-09 66.6 7.9 92 51-153 4-124 (395)
74 2io8_A Bifunctional glutathion 96.0 0.02 6.9E-07 56.8 9.2 108 34-160 481-600 (619)
75 3n6x_A Putative glutathionylsp 92.1 0.15 5.2E-06 48.9 5.2 112 25-152 297-438 (474)
76 3mwd_A ATP-citrate synthase; A 90.4 1.2 4.2E-05 41.9 9.6 98 54-153 10-128 (425)
77 2vob_A Trypanothione synthetas 81.2 2.3 8E-05 42.2 6.4 106 36-160 498-615 (652)
78 3pff_A ATP-citrate synthase; p 78.8 4.1 0.00014 41.6 7.4 98 54-153 10-128 (829)
79 3n6x_A Putative glutathionylsp 31.4 32 0.0011 32.7 3.5 24 218-243 141-164 (474)
80 3k1t_A Glutamate--cysteine lig 27.3 1E+02 0.0035 28.7 6.0 60 208-270 28-93 (432)
81 2xko_C PIPX, global nitrogen r 26.7 16 0.00056 26.7 0.4 19 134-152 4-24 (89)
82 3k1t_A Glutamate--cysteine lig 25.5 2.4E+02 0.0081 26.3 8.0 59 98-159 278-360 (432)
83 2v0f_A Chromodomain-helicase-D 24.3 23 0.0008 25.8 0.9 29 13-42 20-55 (87)
84 3n5b_B ASR0485 protein; PII, P 22.5 24 0.00082 26.8 0.6 24 129-152 22-47 (112)
No 1
>2q7d_A Inositol-tetrakisphosphate 1-kinase; inositol kinase, ITPK1, inositol 1,3,4-5/6 phosphate, inositol phosphate, inositolphosphate; HET: ANP; 1.60A {Homo sapiens} PDB: 2qb5_A* 2odt_X
Probab=100.00 E-value=9.2e-51 Score=379.61 Aligned_cols=258 Identities=32% Similarity=0.513 Sum_probs=214.3
Q ss_pred eeeeccCc------------HHHHHHHHHHHHhCCCcEEeCcHHHHHHhcCHHHHHHHHHhccccCCCCCccCCCEEEEe
Q 024006 13 SFLMQLTG------------KEWRQILEEYRQTHPEVTVLDPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIE 80 (274)
Q Consensus 13 ~ilHK~~~------------~~~~~~l~~y~~~~P~v~Vidp~~ai~~l~dR~~~~~~L~~~~~~~~~~~I~~P~~~~~~ 80 (274)
++|||+++ ..+.+.|++|...||+++|+||+++++++.||+.|++.|++........||++|+|++++
T Consensus 66 vvi~~l~~~~~ea~~~d~~~~~~~~~l~~~~~~~~gv~vinp~~ai~~~~dk~~~~~~L~k~~~~~~~~gIp~P~t~~~~ 145 (346)
T 2q7d_A 66 VIIHKLTDVILEADQNDSQSLELVHRFQEYIDAHPETIVLDPLPAIRTLLDRSKSYELIRKIEAYMEDDRICSPPFMELT 145 (346)
T ss_dssp EEEECCHHHHHHHHTTCHHHHHHHHHHHHHHHHCTTSEEESCHHHHHHTTBHHHHHHHHHHHHHHHCBTTEECCCEEEEC
T ss_pred EEEeCCcccccccccCchhHHHHHHHHHHHHHHCCCeEEcCCHHHHHHhhhHHHHHHHHHhhcccccCCCCCCCCEEEEe
Confidence 69999987 368899999999999999999999999999999999999986433344589999999996
Q ss_pred cC-CCChhHHHHhcCCCCcEEEeeCcCCCCccceeeEEEeChhhHhccCCCeEEEecccCCCeEEEEEEECCEEEEEEEe
Q 024006 81 RD-ASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKKLEPPLVLQEFVNHGGVLFKVYIVGEAIKVVRRF 159 (274)
Q Consensus 81 ~~-~~~~~~~l~~~~l~~P~VvKp~~a~Gs~~sh~m~iv~~~~~l~~l~~p~vvQefI~h~g~~~KV~VIG~~v~~~~R~ 159 (274)
+. .++..+.+...+++||+|+||+.|+||+ +|+|.++++.++|+.++.|+|+||||+|+|+||||||||+++++++|+
T Consensus 146 ~~~~~~~~~~~~~~~lg~P~VvKP~~g~Gs~-s~~v~~v~~~~~l~~~~~~~lvQefI~~~G~dirv~VvG~~v~~~~r~ 224 (346)
T 2q7d_A 146 SLCGDDTMRLLEKNGLTFPFICKTRVAHGTN-SHEMAIVFNQEGLNAIQPPCVVQNFINHNAVLYKVFVVGESYTVVQRP 224 (346)
T ss_dssp SCCCTTHHHHHHHTTCCSSEEEECSBCSSTT-CCEEEEECSGGGTTC--CCEEEEECCCCTTEEEEEEEETTEEEEEEEE
T ss_pred CCCHHHHHHHHHhcCCCCCEEEEecCCCcce-eeeeEEecCHHHHHhcCCCEEEEEeeCCCCeEEEEEEECCEEEEEEEe
Confidence 43 3456666666789999999999999997 999999999999999999999999999999999999999999999999
Q ss_pred cCCCCcccccccCCceeeecC--cccccccCCcCCCCc--cccCCCChHHHHHHHHHHHHHhCCceeEEeEEEeCCCCCe
Q 024006 160 SLPDVTKQDLSTSAGVFRFPR--VSCAAASADDADLDP--CVAELPPRPLLERLAKELRRQLGLRLFNLDIIREHGTRDQ 235 (274)
Q Consensus 160 S~p~~~~~~~~~~~g~~~~~~--~~~~~~~~~~~~~~~--~~~~~~~~~~~~~lA~~~~~~lGl~l~G~Dvi~~~~~g~~ 235 (274)
|+|+|..+. +..|+|+|.. ++++|+......+++ ...++++.++++++|.+++++||++++|||+|++.++| +
T Consensus 225 sl~~~~~~~--~~~~~~~f~s~~~~~~g~~~~~~~~~~~~~~~~~~~~~el~~lA~~a~~alGl~~~gvDii~~~~~g-~ 301 (346)
T 2q7d_A 225 SLKNFSAGT--SDRESIFFNSHNVSKPESSSVLTELDKIEGVFERPSDEVIRELSRALRQALGVSLFGIDIIINNQTG-Q 301 (346)
T ss_dssp CCCCCC------CCCCEEEEGGGTSSTTCCCGGGCCSCCCSCCCCCCHHHHHHHHHHHHHHHCCCEEEEEEEECTTTC-C
T ss_pred cCCCcCcCc--cccccccccceeeccCCccccccccccccccccCCChHHHHHHHHHHHHHhCCceEeeEEEeecCCC-C
Confidence 999887653 2456777765 566665433332221 12345667889999999999999999999999986455 6
Q ss_pred EEEEeccCCCCCCCcccchHHHHHHHHHHHHhhccccCC
Q 024006 236 FYVIDINYFPGYGKMPEYEHIFTDFLLSLTQSRYKKKSC 274 (274)
Q Consensus 236 ~~ViDVN~fPg~~g~~~~~~~l~~~l~~~~~~~~~~~~~ 274 (274)
+||+|||+||||+|++++..++.++|++++++++...+|
T Consensus 302 ~~VlEVN~~PG~~g~~~~~~~i~~~l~~~~~~~~~~~~~ 340 (346)
T 2q7d_A 302 HAVIDINAFPGYEGVSEFFTDLLNHIATVLQGQSTAMAA 340 (346)
T ss_dssp EEEEEEEESCCCTTCTTHHHHHHHHHHHHHHHHHTTCBC
T ss_pred EEEEEEeCCccccccchHHHHHHHHHHHHhhccCCCccc
Confidence 999999999999999999999999999999988865544
No 2
>1z2n_X Inositol 1,3,4-trisphosphate 5/6-kinase; inositol phosphate kinase, ATP-grAsp, transferase; HET: ADP; 1.20A {Entamoeba histolytica} PDB: 1z2o_X* 1z2p_X*
Probab=100.00 E-value=2.2e-33 Score=256.62 Aligned_cols=246 Identities=20% Similarity=0.410 Sum_probs=186.4
Q ss_pred eeeeccCcH--HHHHHHHHHHHhCCCcEEeCcHHHHHHhcCHHHHHHHHHhccccCCCCCccCCCEEEEecCCCChhHHH
Q 024006 13 SFLMQLTGK--EWRQILEEYRQTHPEVTVLDPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVV 90 (274)
Q Consensus 13 ~ilHK~~~~--~~~~~l~~y~~~~P~v~Vidp~~ai~~l~dR~~~~~~L~~~~~~~~~~~I~~P~~~~~~~~~~~~~~~l 90 (274)
+++|++++. ++.+.|+.+...+++++++||+++++.++||..+.+.|++. ||++|++..+++ .+++.+.+
T Consensus 58 ~v~~~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~~~~~~dK~~~~~~l~~~-------gi~~P~~~~~~~-~~~~~~~~ 129 (324)
T 1z2n_X 58 AIITKRTHPVGKMADEMRKYEKDHPKVLFLESSAIHDMMSSREEINALLIKN-------NIPIPNSFSVKS-KEEVIQLL 129 (324)
T ss_dssp EEEECCSCSSSHHHHHHHHHHHHCTTSEEETCHHHHHHHTBHHHHHHHHHHT-------TCCCSCEEEESS-HHHHHHHH
T ss_pred EEEEeccchHHHHHHHHHHHHHhCCCCeEeCCHHHHHHHhCHHHHHHHHHHC-------CCCCCCEEEeCC-HHHHHHHH
Confidence 578888764 67788888888888999999999999999999999999986 899999999853 22344444
Q ss_pred HhcCCCCcEEEeeCcCCCCccceeeEEEeChhhHhccCCCeEEEecccCCCeEEEEEEECCEEEEEEEecCCCCcccccc
Q 024006 91 LKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKKLEPPLVLQEFVNHGGVLFKVYIVGEAIKVVRRFSLPDVTKQDLS 170 (274)
Q Consensus 91 ~~~~l~~P~VvKp~~a~Gs~~sh~m~iv~~~~~l~~l~~p~vvQefI~h~g~~~KV~VIG~~v~~~~R~S~p~~~~~~~~ 170 (274)
...+++||+|+||..|+|+..++++.++.+.++|..++.++++||||++.|++++|+|+|+++.++.|++.+++..+...
T Consensus 130 ~~~~~~~P~vvKP~~g~g~~~s~gv~~v~~~~~l~~~~~~~lvqe~i~~~g~~~~v~v~g~~~~~~~~~~~~~~~~g~~~ 209 (324)
T 1z2n_X 130 QSKQLILPFIVKPENAQGTFNAHQMKIVLEQEGIDDIHFPCLCQHYINHNNKIVKVFCIGNTLKWQTRTSLPNVHRCGIK 209 (324)
T ss_dssp HTTCSCSSEEEEESBCSSSSGGGEEEEECSGGGGTTCCSSEEEEECCCCTTCEEEEEEETTEEEEEEECCCCCCCCSSCC
T ss_pred HHcCCCCCEEEeeCCCCCCccceeeEEEeCHHHHhhcCCCEEEEEccCCCCcEEEEEEECCEEEEEEecCcccccCCCcc
Confidence 44567899999999987777789999999999999889999999999988999999999999998888888776443211
Q ss_pred cCCceeeec----------Cccccc----ccCCc-CCC--CccccCCCChHHHHHHHHHHHHHhCCceeEEeEEEeCCCC
Q 024006 171 TSAGVFRFP----------RVSCAA----ASADD-ADL--DPCVAELPPRPLLERLAKELRRQLGLRLFNLDIIREHGTR 233 (274)
Q Consensus 171 ~~~g~~~~~----------~~~~~~----~~~~~-~~~--~~~~~~~~~~~~~~~lA~~~~~~lGl~l~G~Dvi~~~~~g 233 (274)
+ ..+|++. .+++.. +.... ..+ .+......+.++++++|.++.++||+.++|||++++.++|
T Consensus 210 ~-~~~~~~~~~~~~~~p~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~a~~~~~~lg~~~~~vD~~~~~~~g 288 (324)
T 1z2n_X 210 S-VDFNNQHLEDILSWPEGVIDKQDIIENSANRFGSKILEDPILLNLTSEAEMRDLAYKVRCALGVQLCGIDFIKENEQG 288 (324)
T ss_dssp E-EEEETTBGGGGGGSCTTSSCHHHHHHHHTTTTCCCBCSCTTTTTSCCHHHHHHHHHHHHHHHTCSEEEEEEECGGGCS
T ss_pred c-eeeccccchhhhccccccccccccccccccchhhccccCCccccCCCHHHHHHHHHHHHHHhCCcEEeeEEEEEcCCC
Confidence 0 1122222 001100 00000 000 0000011122579999999999999999999999974445
Q ss_pred CeEEEEeccCCCCCCCcccchHHHHHHHHHHHHhhc
Q 024006 234 DQFYVIDINYFPGYGKMPEYEHIFTDFLLSLTQSRY 269 (274)
Q Consensus 234 ~~~~ViDVN~fPg~~g~~~~~~~l~~~l~~~~~~~~ 269 (274)
++||+|||++|||++++++. .+.+++.+.++++.
T Consensus 289 -~~~vlEvN~~Pg~~~~~~~~-~i~~~l~~~~~~~~ 322 (324)
T 1z2n_X 289 -NPLVVDVNVFPSYGGKVDFD-WFVEKVALCYTEVA 322 (324)
T ss_dssp -SCEEEEEEESCCTTSCBCHH-HHHHHHHHHHHC--
T ss_pred -CEEEEEEcCCCCcCCCCCHH-HHHHHHHHHHHHhh
Confidence 68999999999999999998 88999999887654
No 3
>3t7a_A Inositol pyrophosphate kinase; ATP-grAsp fold, transferase; HET: ADP; 1.70A {Homo sapiens} PDB: 3t9a_A* 3t9b_A* 3t9c_A* 3t9d_A* 3t9e_A* 3t9f_A* 4gb4_A* 4hn2_A* 3t54_A* 3t99_A*
Probab=99.97 E-value=3e-31 Score=241.25 Aligned_cols=210 Identities=18% Similarity=0.230 Sum_probs=156.0
Q ss_pred HHHHHHHHHhCCCcEEeCcHHHHHHhcCHHHHHHHHHhccccCCCCCccCCCEEEEecCCC--------ChhHHHH--hc
Q 024006 24 RQILEEYRQTHPEVTVLDPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDAS--------SIPDVVL--KA 93 (274)
Q Consensus 24 ~~~l~~y~~~~P~v~Vidp~~ai~~l~dR~~~~~~L~~~~~~~~~~~I~~P~~~~~~~~~~--------~~~~~l~--~~ 93 (274)
.+...+|.+.. +.++||++.++..+.||..++++|++. |||+|++.++.++.. +..+.+. ..
T Consensus 71 l~kai~y~~lr-~p~~INd~~~q~~~~DK~~~~~iL~~~-------gIPtP~t~~~~rd~~~~~~~~~~e~~d~i~~~g~ 142 (330)
T 3t7a_A 71 LDKAVAYAKLR-NPFVINDLNMQYLIQDRREVYSILQAE-------GILLPRYAILNRDPNNPKECNLIEGEDHVEVNGE 142 (330)
T ss_dssp HHHHHHHHHHH-CCEESBCSTHHHHHTBHHHHHHHHHHT-------TCCCCCEEEECCBTTBGGGSSEEECSSEEEETTE
T ss_pred HHHHHHHHHHh-CCceeCCHHHHHHHHHHHHHHHHHHHc-------CCCCCCEEEEeCCCCCccccceeccchhhhhccc
Confidence 36788998842 349999999999999999999999995 899999999965431 0011111 23
Q ss_pred CCCCcEEEeeCcCCCCccceeeEEEeChhh---Hh-------------------ccCCCeEEEecccCCCeEEEEEEECC
Q 024006 94 GLTLPLVAKPLVADGSAKSHELSLAYDQYS---LK-------------------KLEPPLVLQEFVNHGGVLFKVYIVGE 151 (274)
Q Consensus 94 ~l~~P~VvKp~~a~Gs~~sh~m~iv~~~~~---l~-------------------~l~~p~vvQefI~h~g~~~KV~VIG~ 151 (274)
.+++|+|+||+.| | .|+++|.+.... .. .-+.++++||||+++|+|+||||||+
T Consensus 143 ~l~kPfVeKPv~G--s--dhni~iyyp~s~GgG~~RLfrki~n~sS~~~~~~~vr~~~~~i~QEFI~~~G~DIRv~vVG~ 218 (330)
T 3t7a_A 143 VFQKPFVEKPVSA--E--DHNVYIYYPTSAGGGSQRLFRKIGSRSSVYSPESNVRKTGSYIYEEFMPTDGTDVKVYTVGP 218 (330)
T ss_dssp EEESSEEEEESBT--T--CCCCEEECCGGGTCCEEEEEEEETTEEEEEESCCSCCSSSCEEEEECCCCSSEEEEEEEEST
T ss_pred cccCCeeEccccc--c--cCcceeecccccCCchhhhhhhhCCcccccChhhhhccCCcEEEEeccCCCCceEEEEEECC
Confidence 4679999999996 2 566666665532 10 12568999999999999999999999
Q ss_pred EEEEEEEecCCCCcccccccCCceeeecCcccccccCCcCCCCccccCCCChHHHHHHHHHHHHHhCCceeEEeEEEeCC
Q 024006 152 AIKVVRRFSLPDVTKQDLSTSAGVFRFPRVSCAAASADDADLDPCVAELPPRPLLERLAKELRRQLGLRLFNLDIIREHG 231 (274)
Q Consensus 152 ~v~~~~R~S~p~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lA~~~~~~lGl~l~G~Dvi~~~~ 231 (274)
+++++++|..|.. .++|++|. . .|..+....+ +++.+++|.++++++|++++|||+++++
T Consensus 219 ~vv~Am~R~sp~~-~G~~r~N~--------~-gG~~~~~v~L---------t~eek~iA~kaa~a~G~~v~GVDlLrs~- 278 (330)
T 3t7a_A 219 DYAHAEARKSPAL-DGKVERDS--------E-GKEVRYPVIL---------NAREKLIAWKVCLAFKQTVCGFDLLRAN- 278 (330)
T ss_dssp TCEEEEEEECTTS-SCBCCBCT--------T-SCBCCEECCC---------CHHHHHHHHHHHHHTTBSEEEEEEEEET-
T ss_pred EEEEEEEEeCCCC-CCcEEEcC--------C-CCceeeeecC---------CHHHHHHHHHHHHHhCCceEEEEEEEEC-
Confidence 9988755544421 12444431 1 2222233332 2467999999999999999999999985
Q ss_pred CCCeEEEEeccCCCCCCCcccchHHHHHHHHHHHHh
Q 024006 232 TRDQFYVIDINYFPGYGKMPEYEHIFTDFLLSLTQS 267 (274)
Q Consensus 232 ~g~~~~ViDVN~fPg~~g~~~~~~~l~~~l~~~~~~ 267 (274)
+ ++||+|||.+|-.|+..+|+..++..|.+.+-+
T Consensus 279 -~-~~~V~EVNg~~fvk~~~~yyd~~a~il~~~~~~ 312 (330)
T 3t7a_A 279 -G-QSYVCDVNGFSFVKNSMKYYDDCAKILGNIVMR 312 (330)
T ss_dssp -T-EEEEEEEEESCCCSSCHHHHHHHHHHHHHHHHH
T ss_pred -C-ccEEEEeCCCccccCchhHHHHHHHHHHHHHHH
Confidence 2 478999999999999999998888888887754
No 4
>1i7n_A Synapsin II; synapse, phosphorylation, neuropeptide; 1.90A {Rattus norvegicus} SCOP: c.30.1.5 d.142.1.3 PDB: 1i7l_A 1auv_A 1aux_A*
Probab=99.97 E-value=1.9e-29 Score=232.05 Aligned_cols=221 Identities=14% Similarity=0.197 Sum_probs=161.7
Q ss_pred hhhheeeeeccCcH-----HHHHHHHHHHHhCCCcEEeCcHHHHHHhcCH----HHHHHHHHhccccCCCCCccCCCEEE
Q 024006 8 FVVSFSFLMQLTGK-----EWRQILEEYRQTHPEVTVLDPPYAIQHLHNR----QSMLQCVADMNLSNSYGKVDVPRQLV 78 (274)
Q Consensus 8 ~~~~~~ilHK~~~~-----~~~~~l~~y~~~~P~v~Vidp~~ai~~l~dR----~~~~~~L~~~~~~~~~~~I~~P~~~~ 78 (274)
+-.-++|++..+.. .++ .+.++.+. -|++++|+++++.++.|| ..++++|.++++ .++|.|++..
T Consensus 67 ~~~D~vi~R~~~~~~~~~~~~r-~vl~~le~-~GvpviN~~~sI~~~~DK~~~~~~~~~~l~~~gi----~~~P~~~~~~ 140 (309)
T 1i7n_A 67 FRPDFVLIRQHAFGMAENEDFR-HLVIGMQY-AGLPSINSLESIYNFCDKPWVFAQMVAIFKTLGG----EKFPLIEQTY 140 (309)
T ss_dssp ECCSEEEECSCCCCSSTTCCCH-HHHHHHHH-TTCCEESCHHHHHHTSSHHHHHHHHHHHHHHHCT----TTSCBCCCEE
T ss_pred ccCCEEEEecccccccccchHH-HHHHHHHH-CCccccCCHHHHHHhCCccHHHHHHHHHHHhCCC----CCCCCCCEEe
Confidence 33345566655432 233 33445554 389999999999999999 678888888743 1458444443
Q ss_pred EecCCCChhHHHHhcCCCCcEEEeeCcCCCCccceeeEEEeChhhHhcc-------CCCeEEEecccCCCeEEEEEEECC
Q 024006 79 IERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKKL-------EPPLVLQEFVNHGGVLFKVYIVGE 151 (274)
Q Consensus 79 ~~~~~~~~~~~l~~~~l~~P~VvKp~~a~Gs~~sh~m~iv~~~~~l~~l-------~~p~vvQefI~h~g~~~KV~VIG~ 151 (274)
.+ +. .+.+ ..++||+|+||..| | ++.+|.++.++++++++ +..+++||||+ .|+|+||+|||+
T Consensus 141 ~~-~~---~~~~--~~~g~PvVvK~~~G--s-~G~GV~lv~~~~~~~~~~~~~~~~~~~~~vQefI~-~g~DiRv~VvGg 210 (309)
T 1i7n_A 141 YP-NH---REML--TLPTFPVVVKIGHA--H-SGMGKVKVENHYDFQDIASVVALTQTYATAEPFID-AKYDIRVQKIGN 210 (309)
T ss_dssp ES-SG---GGGS--SCCCSSEEEEESSC--S-TTTTEEEECSHHHHHHHHHHHHHHTCCEEEEECCC-EEEEEEEEEETT
T ss_pred eC-Ch---hhhh--hccCCCEEEEeCCC--C-ceeCeEEECCHHHHHHHHHHHhccCCeEEEEeecC-CCceEEEEEECC
Confidence 43 21 1212 34789999999994 4 78999999999888653 66789999999 799999999999
Q ss_pred EEEEEEEecCCCCcccccccCCceeeecCcccccccCCcCCCCccccCCCChHHHHHHHHHHHHHh-CCceeEEeEEEeC
Q 024006 152 AIKVVRRFSLPDVTKQDLSTSAGVFRFPRVSCAAASADDADLDPCVAELPPRPLLERLAKELRRQL-GLRLFNLDIIREH 230 (274)
Q Consensus 152 ~v~~~~R~S~p~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lA~~~~~~l-Gl~l~G~Dvi~~~ 230 (274)
++.+++|++.. ++|++|. . ++..+. ++.+++.+++|.++++++ |++++|||+|.+.
T Consensus 211 ~v~a~~Rr~~~----g~wrtN~--------~--~~~~e~---------~~l~~e~~~la~~A~~a~gGldi~GVDll~~~ 267 (309)
T 1i7n_A 211 NYKAYMRTSIS----GNWKTNT--------G--SAMLEQ---------IAMSDRYKLWVDACSEMFGGLDICAVKAVHGK 267 (309)
T ss_dssp EEEEEEEESSC----TTTSCSC--------C--CSSEEE---------ECCCHHHHHHHHHHTTGGGCCSEEEEEEEEET
T ss_pred EEEEEEEEcCC----CCCeecC--------C--cceeee---------cCCCHHHHHHHHHHHHHhCCCCEEEEEEEEcC
Confidence 99988999753 2455441 1 111111 223467899999999999 8999999999986
Q ss_pred CCCCeEEEEeccC--CCCCCCccc-chHHHHHHHHHHHHhhc
Q 024006 231 GTRDQFYVIDINY--FPGYGKMPE-YEHIFTDFLLSLTQSRY 269 (274)
Q Consensus 231 ~~g~~~~ViDVN~--fPg~~g~~~-~~~~l~~~l~~~~~~~~ 269 (274)
+| +++|+|||. +||++|.+. ....+++++.+.+++++
T Consensus 268 -~g-~~~V~EVN~~~~P~~~~~~~~~~~~ia~~ii~~~~~~~ 307 (309)
T 1i7n_A 268 -DG-KDYIFEVMDCSMPLIGEHQVEDRQLITDLVISKMNQLL 307 (309)
T ss_dssp -TS-CEEEEEEECTTCCCCSSCHHHHHHHHHHHHHHHHHHHC
T ss_pred -CC-CEEEEEECCCCCCCccchhhhhHHHHHHHHHHHHHHHc
Confidence 45 589999999 999998874 56788888888887765
No 5
>2p0a_A Synapsin-3, synapsin III; neurotransmitter release, schizophrenia, vesicle T structural genomics, structural genomics consortium, SGC, neuropeptide; HET: ANP; 1.90A {Homo sapiens}
Probab=99.96 E-value=2.4e-28 Score=227.47 Aligned_cols=219 Identities=13% Similarity=0.197 Sum_probs=160.9
Q ss_pred heeeeeccCcH-----HHHHHHHHHHHhCCCcEEeCcHHHHHHhcCH----HHHHHHHHhccccCCCCCccCCCEEEEec
Q 024006 11 SFSFLMQLTGK-----EWRQILEEYRQTHPEVTVLDPPYAIQHLHNR----QSMLQCVADMNLSNSYGKVDVPRQLVIER 81 (274)
Q Consensus 11 ~~~ilHK~~~~-----~~~~~l~~y~~~~P~v~Vidp~~ai~~l~dR----~~~~~~L~~~~~~~~~~~I~~P~~~~~~~ 81 (274)
-++|+...+.. .++ .+.++.+. -+++++|++++|.++.|| ..++++|.++++ .++|.|++...+
T Consensus 87 D~vi~R~~~~~~~~~~~yr-~vl~~le~-~GvpviN~~~sI~~~~DK~~v~~~~l~~l~~~gi----~~~P~~~~t~~~- 159 (344)
T 2p0a_A 87 DFILVRQHAYSMALGEDYR-SLVIGLQY-GGLPAVNSLYSVYNFCSKPWVFSQLIKIFHSLGP----EKFPLVEQTFFP- 159 (344)
T ss_dssp SEEEECSCSEEGGGTEECH-HHHHHHHH-TTCCEESCHHHHHHTTCHHHHHHHHHHHHHHHCT----TTSCBCCCEEES-
T ss_pred CEEEEeccccccccchhHH-HHHHHHHH-CCceecCCHHHHHhhCCchHHHHHHHHHHHHCCC----CCCCCCCEEecC-
Confidence 45566665532 233 44445554 389999999999999999 778888888743 145844444443
Q ss_pred CCCChhHHHHhcCCCCcEEEeeCcCCCCccceeeEEEeChhhHhcc-------CCCeEEEecccCCCeEEEEEEECCEEE
Q 024006 82 DASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKKL-------EPPLVLQEFVNHGGVLFKVYIVGEAIK 154 (274)
Q Consensus 82 ~~~~~~~~l~~~~l~~P~VvKp~~a~Gs~~sh~m~iv~~~~~l~~l-------~~p~vvQefI~h~g~~~KV~VIG~~v~ 154 (274)
+..++ ...++||+|+||..| | ++.+|.++.+.++++++ +..+++||||+ .|+|+||+|||+++.
T Consensus 160 ~~~~~-----~~~~g~PvVvK~~~G--s-~G~GV~lve~~~~~~~~~~~~~~~~~~~~vQefI~-~g~DiRv~VVGg~vv 230 (344)
T 2p0a_A 160 NHKPM-----VTAPHFPVVVKLGHA--H-AGMGKIKVENQLDFQDITSVVAMAKTYATTEAFID-SKYDIRIQKIGSNYK 230 (344)
T ss_dssp SSTTC-----CCCSSSSEEEEESSC--C-TTTTEEEECSHHHHHHHHHHHHHHTCCEEEEECCC-EEEEEEEEEETTEEE
T ss_pred chhhh-----hhccCCCEEEEeCCC--C-ceeCeEEECCHHHHHHHHHHHhccCCeEEEEeccC-CCccEEEEEECCEEE
Confidence 22222 125789999999994 4 78999999999988742 56788999999 799999999999999
Q ss_pred EEEEecCCCCcccccccCCceeeecCcccccccCCcCCCCccccCCCChHHHHHHHHHHHHHh-CCceeEEeEEEeCCCC
Q 024006 155 VVRRFSLPDVTKQDLSTSAGVFRFPRVSCAAASADDADLDPCVAELPPRPLLERLAKELRRQL-GLRLFNLDIIREHGTR 233 (274)
Q Consensus 155 ~~~R~S~p~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lA~~~~~~l-Gl~l~G~Dvi~~~~~g 233 (274)
+++|++.. ++|++|. . ++..+. ++.+++.+++|.++++++ |++++|||+|.+. +|
T Consensus 231 a~~R~~~~----g~wrtN~--------~--~~~~e~---------~~l~~e~~~la~~Aa~a~gGldi~GVDll~~~-~G 286 (344)
T 2p0a_A 231 AYMRTSIS----GNWKANT--------G--SAMLEQ---------VAMTERYRLWVDSCSEMFGGLDICAVKAVHSK-DG 286 (344)
T ss_dssp EEEEEESS----SCSSTTS--------S--SEEEEE---------ECCCHHHHHHHHHHTTGGGCCSEEEEEEEEET-TS
T ss_pred EEEEecCC----CCCeecC--------C--ceEEEe---------eCCCHHHHHHHHHHHHHhCCCCEEEEEEEEcC-CC
Confidence 99999753 2455442 1 111111 223467899999999999 8999999999986 45
Q ss_pred CeEEEEeccC--CCCCCCccc-chHHHHHHHHHHHHhhcc
Q 024006 234 DQFYVIDINY--FPGYGKMPE-YEHIFTDFLLSLTQSRYK 270 (274)
Q Consensus 234 ~~~~ViDVN~--fPg~~g~~~-~~~~l~~~l~~~~~~~~~ 270 (274)
+++|+|||. .|||+|.+. ....+++++.+.++++.+
T Consensus 287 -~~~VlEVN~~~~P~~~~~~~~~~~~Ia~~ii~~i~~~~~ 325 (344)
T 2p0a_A 287 -RDYIIEVMDSSMPLIGEHVEEDRQLMADLVVSKMSQLPM 325 (344)
T ss_dssp -CEEEEEEECTTCCCCGGGHHHHHHHHHHHHHHHHHTCC-
T ss_pred -CEEEEEEcCCCCCcccchhhhHHHHHHHHHHHHHHHhcC
Confidence 589999999 999998885 457788888888877654
No 6
>1pk8_A RAT synapsin I; ATP binding, ATP grAsp, calcium (II) ION, membrane protein; HET: ATP; 2.10A {Rattus norvegicus} SCOP: c.30.1.5 d.142.1.3 PDB: 1px2_A*
Probab=99.95 E-value=1.1e-27 Score=227.42 Aligned_cols=222 Identities=12% Similarity=0.173 Sum_probs=162.0
Q ss_pred hhhhheeeeeccCcH-----HHHHHHHHHHHhCCCcEEeCcHHHHHHhcCH----HHHHHHHHhccccCCCCCccCCCEE
Q 024006 7 TFVVSFSFLMQLTGK-----EWRQILEEYRQTHPEVTVLDPPYAIQHLHNR----QSMLQCVADMNLSNSYGKVDVPRQL 77 (274)
Q Consensus 7 ~~~~~~~ilHK~~~~-----~~~~~l~~y~~~~P~v~Vidp~~ai~~l~dR----~~~~~~L~~~~~~~~~~~I~~P~~~ 77 (274)
.+-.-++|+...+.. .++ .+.++++. -+++++|++++|.++.|| ..++++|.++++ .++|.|.+.
T Consensus 178 ~~~~DaviiR~~~~~~~~~~~yr-~vlr~lE~-~GvpviNs~~sI~~~~DK~~vf~~~l~ll~~~gi----~~iP~t~~t 251 (422)
T 1pk8_A 178 SLKPDFVLIRQHAFSMARNGDYR-SLVIGLQY-AGIPSVNSLHSVYNFCDKPWVFAQMVRLHKKLGT----EEFPLIDQT 251 (422)
T ss_dssp EECCSEEEECSCSBCSSTTCBCH-HHHHHHHH-TTCCEESCHHHHHHTSSHHHHHHHHHHHHHHHCT----TTSCBCCCE
T ss_pred ccCCCEEEEeccccccccchhHH-HHHHHHHH-CCccccCCHHHHHHhCCccHHHHHHHHHHHhCCC----CCCCCCceE
Confidence 333445666665432 233 44445554 389999999999999999 577888888743 145744443
Q ss_pred EEecCCCChhHHHHhcCCCCcEEEeeCcCCCCccceeeEEEeChhhHhcc-------CCCeEEEecccCCCeEEEEEEEC
Q 024006 78 VIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKKL-------EPPLVLQEFVNHGGVLFKVYIVG 150 (274)
Q Consensus 78 ~~~~~~~~~~~~l~~~~l~~P~VvKp~~a~Gs~~sh~m~iv~~~~~l~~l-------~~p~vvQefI~h~g~~~KV~VIG 150 (274)
..+ +..++ + ..++||+|+||..| | ++.+|.++.+.++++++ +..+++||||+ .|+|+||+|||
T Consensus 252 ~~~-~~~~~---i--~~~g~PvVvKp~~G--S-~G~GV~lve~~~~l~~ii~~~~~~~~~~~vQEfI~-~g~DIRv~VVG 321 (422)
T 1pk8_A 252 FYP-NHKEM---L--SSTTYPVVVKMGHA--H-SGMGKVKVDNQHDFQDIASVVALTKTYATAEPFID-AKYDVRVQKIG 321 (422)
T ss_dssp EES-SGGGC---C--CCSSSSEEEEESSC--C-TTTTEEEECSHHHHHHHHHHHHHHTSCEEEEECCC-EEEEEEEEEET
T ss_pred ecC-chhhh---h--hccCCCEEEEeCCC--C-ceeCeEEeCCHHHHHHHHHHHhccCceEEEEeecC-CCceEEEEEEC
Confidence 343 21111 1 34789999999994 4 88999999999888753 56789999999 79999999999
Q ss_pred CEEEEEEEecCCCCcccccccCCceeeecCcccccccCCcCCCCccccCCCChHHHHHHHHHHHHHh-CCceeEEeEEEe
Q 024006 151 EAIKVVRRFSLPDVTKQDLSTSAGVFRFPRVSCAAASADDADLDPCVAELPPRPLLERLAKELRRQL-GLRLFNLDIIRE 229 (274)
Q Consensus 151 ~~v~~~~R~S~p~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lA~~~~~~l-Gl~l~G~Dvi~~ 229 (274)
+++++++|++.. ++|++|. . ++..+. ++.+++.+++|.++++++ |++++|||+|++
T Consensus 322 g~vva~~Rr~~~----g~WrtNv--------g--~g~~e~---------i~lt~e~~elA~kAaka~gGldiaGVDlL~s 378 (422)
T 1pk8_A 322 QNYKAYMRTSVS----GNWKTNT--------G--SAMLEQ---------IAMSDRYKLWVDTCSEIFGGLDICAVEALHG 378 (422)
T ss_dssp TEEEEEEEEESS----SCSSTTS--------S--CEEEEE---------ECCCHHHHHHHHHHTTGGGCCSEEEEEEEEE
T ss_pred CEEEEEEEEcCC----CCceecc--------C--ceeeee---------eCCCHHHHHHHHHHHHHhCCCCEEEEEEEEc
Confidence 999988999743 2455442 1 111111 223467899999999999 899999999998
Q ss_pred CCCCCeEEEEeccC--CCCCCCccc-chHHHHHHHHHHHHhhc
Q 024006 230 HGTRDQFYVIDINY--FPGYGKMPE-YEHIFTDFLLSLTQSRY 269 (274)
Q Consensus 230 ~~~g~~~~ViDVN~--fPg~~g~~~-~~~~l~~~l~~~~~~~~ 269 (274)
. +| +++|+|||. .||++|.+. ....+++++.+.++++.
T Consensus 379 ~-dG-~~~VlEVN~s~~P~~~g~~~~~~~~IA~~ii~~i~~~~ 419 (422)
T 1pk8_A 379 K-DG-RDHIIEVVGSSMPLIGDHQDEDKQLIVELVVNKMTQAL 419 (422)
T ss_dssp T-TS-CEEEEEEECTTCCCCTTCHHHHHHHHHHHHHHHHHCC-
T ss_pred C-CC-CEEEEEECCCCCCCccchhhhHHHHHHHHHHHHHHHhc
Confidence 6 44 589999999 999998885 46788889998888765
No 7
>4eg0_A D-alanine--D-alanine ligase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.65A {Burkholderia ambifaria} PDB: 4egq_A 4egj_A
Probab=99.89 E-value=2.3e-22 Score=183.88 Aligned_cols=212 Identities=14% Similarity=0.119 Sum_probs=140.1
Q ss_pred heeeeeccCcHHHHHHHHHHHHhCCCcEEe-CcHHHHHHhcCHHHHHHHHHhccccCCCCCccCCCEEEEecCCCChhHH
Q 024006 11 SFSFLMQLTGKEWRQILEEYRQTHPEVTVL-DPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDV 89 (274)
Q Consensus 11 ~~~ilHK~~~~~~~~~l~~y~~~~P~v~Vi-dp~~ai~~l~dR~~~~~~L~~~~~~~~~~~I~~P~~~~~~~~~~~~~~~ 89 (274)
-|.++|--.+.. ..++.+.+. -+++++ ++++++..++||..+.+.|++. ||++|++..+.+.. +..+.
T Consensus 69 v~~~~hg~~ge~--~~~~~~le~-~gip~~g~~~~~~~~~~dK~~~k~~l~~~-------Gip~p~~~~~~~~~-~~~~~ 137 (317)
T 4eg0_A 69 AFNALHGGYGEN--GQIQGALDF-YGIRYTGSGVLGSALGLDKFRTKLVWQQT-------GVPTPPFETVMRGD-DYAAR 137 (317)
T ss_dssp EEECCCSGGGTS--SHHHHHHHH-HTCEESSCCHHHHHHHHCHHHHHHHHHHT-------TCCCCCEEEEETTS-CHHHH
T ss_pred EEEcCCCCCCch--HHHHHHHHH-cCCCeeCcCHHHHHHHhCHHHHHHHHHHC-------CcCCCCEEEEECch-hHHHH
Confidence 355666554432 244555554 268888 6779999999999999999996 89999999996433 34332
Q ss_pred HH--hcCCCCcEEEeeCcCCCCccceeeEEEeChhhHhc-------cCCCeEEEecccCCCeEEEEEEECCEEEEEEEec
Q 024006 90 VL--KAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKK-------LEPPLVLQEFVNHGGVLFKVYIVGEAIKVVRRFS 160 (274)
Q Consensus 90 l~--~~~l~~P~VvKp~~a~Gs~~sh~m~iv~~~~~l~~-------l~~p~vvQefI~h~g~~~KV~VIG~~v~~~~R~S 160 (274)
.. ...++||+|+||..++ +|.++.++.+.++|.+ .+.++++||||++ |+++.|.|+|+++.......
T Consensus 138 ~~~~~~~~g~PvvvKP~~~~---~s~Gv~~v~~~~el~~a~~~~~~~~~~~lvEe~i~~-G~E~~v~vl~~~~~~~~~i~ 213 (317)
T 4eg0_A 138 ATDIVAKLGLPLFVKPASEG---SSVAVLKVKTADALPAALSEAATHDKIVIVEKSIEG-GGEYTACIAGDLDLPLIKIV 213 (317)
T ss_dssp HHHHHHHHCSCEEEEECC--------CCEEECSGGGHHHHHHHHTTTCSEEEEEECCCS-SEEEEEEEETTCCCCCEEEE
T ss_pred HHHHHHhcCCCEEEEeCCCC---CCCCEEEECCHHHHHHHHHHHHhCCCeEEEEcCCCC-CcEEEEEEECCcccceEEEe
Confidence 21 1347899999999864 4678899999988764 2568999999964 99999999999754322221
Q ss_pred CCCCcccccccCCceeeecCcccccccC--CcCCCCccccCCCChHHHHHHHHHHHHHhCCc-eeEEeEEEeCCCCCeEE
Q 024006 161 LPDVTKQDLSTSAGVFRFPRVSCAAASA--DDADLDPCVAELPPRPLLERLAKELRRQLGLR-LFNLDIIREHGTRDQFY 237 (274)
Q Consensus 161 ~p~~~~~~~~~~~g~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~lA~~~~~~lGl~-l~G~Dvi~~~~~g~~~~ 237 (274)
. ..++++|......+... .+..++++. .++++++|.++.++||+. ++++|++++. +| ++|
T Consensus 214 ~----------~~~~~~~~~k~~~g~~~~~~P~~l~~~~-----~~~l~~~a~~~~~~lg~~G~~~vD~~~~~-~g-~~~ 276 (317)
T 4eg0_A 214 P----------AGEFYDYHAKYVANDTQYLIPCGLPAEQ-----ETELKRIARRAFDVLGCTDWGRADFMLDA-AG-NAY 276 (317)
T ss_dssp C-------------------------CEEESSCSSCHHH-----HHHHHHHHHHHHHTTTCCSEEEEEEEECT-TC-CEE
T ss_pred e----------CCceechhhcccCCCeeEEcCCCCCHHH-----HHHHHHHHHHHHHHhCCCceEEEEEEEeC-CC-CEE
Confidence 1 12344444332211111 111222211 357899999999999997 8889999985 45 699
Q ss_pred EEeccCCCCCCCcccch
Q 024006 238 VIDINYFPGYGKMPEYE 254 (274)
Q Consensus 238 ViDVN~fPg~~g~~~~~ 254 (274)
|+|||..||++...-++
T Consensus 277 vlEiN~~pg~t~~s~~p 293 (317)
T 4eg0_A 277 FLEVNTAPGMTDHSLPP 293 (317)
T ss_dssp EEEEESSCCCSTTSHHH
T ss_pred EEEeeCCCCCCcccHHH
Confidence 99999999999875554
No 8
>3r5x_A D-alanine--D-alanine ligase; alpha-beta structure, cytosol, structural genomics, for structural genomics of infectious diseases, csgid; HET: MSE ATP; 2.00A {Bacillus anthracis} PDB: 3r23_A*
Probab=99.88 E-value=5.2e-22 Score=179.76 Aligned_cols=207 Identities=13% Similarity=0.208 Sum_probs=142.2
Q ss_pred HHHHHHhCCCcEEeCc-HHHHHHhcCHHHHHHHHHhccccCCCCCccCCCEEEEecCCCChhH-HHHhcCCCCcEEEeeC
Q 024006 27 LEEYRQTHPEVTVLDP-PYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPD-VVLKAGLTLPLVAKPL 104 (274)
Q Consensus 27 l~~y~~~~P~v~Vidp-~~ai~~l~dR~~~~~~L~~~~~~~~~~~I~~P~~~~~~~~~~~~~~-~l~~~~l~~P~VvKp~ 104 (274)
++.+.+. -++++++| +++++.++||..+.+.|++. ||++|++.++.+.+ +... .. ..++||+|+||.
T Consensus 73 ~~~~le~-~gi~~~g~~~~~~~~~~dK~~~~~~l~~~-------Gip~p~~~~~~~~~-~~~~~~~--~~~~~P~vvKP~ 141 (307)
T 3r5x_A 73 VQGTLES-LGIPYSGSNMLSSGICMDKNISKKILRYE-------GIETPDWIELTKME-DLNFDEL--DKLGFPLVVKPN 141 (307)
T ss_dssp HHHHHHH-HTCCBSSSCHHHHHHHHCHHHHHHHHHHT-------TCCCCCEEEEESSS-CCCHHHH--HHHCSSEEEEEC
T ss_pred HHHHHHH-cCCCeeCcCHHHHHHHcCHHHHHHHHHHC-------CCCCCCEEEEeChh-hhhHHHH--HhcCCCEEEEeC
Confidence 4445544 36788866 99999999999999999986 89999999996433 2322 22 246899999999
Q ss_pred cCCCCccceeeEEEeChhhHhcc-------CCCeEEEecccCCCeEEEEEEECCEEEEE-EEecCCCCcccccccCCcee
Q 024006 105 VADGSAKSHELSLAYDQYSLKKL-------EPPLVLQEFVNHGGVLFKVYIVGEAIKVV-RRFSLPDVTKQDLSTSAGVF 176 (274)
Q Consensus 105 ~a~Gs~~sh~m~iv~~~~~l~~l-------~~p~vvQefI~h~g~~~KV~VIG~~v~~~-~R~S~p~~~~~~~~~~~g~~ 176 (274)
.++ +|.++.++.+.+++.+. +.++++||||+ |++++|.|+|+++... .+... .+++
T Consensus 142 ~~~---~s~Gv~~v~~~~el~~~~~~~~~~~~~~lvee~i~--G~e~~v~v~~g~~~~~~~~~~~-----------~~~~ 205 (307)
T 3r5x_A 142 SGG---SSVGVKIVYDKDELISMLETVFEWDSEVVIEKYIK--GEEITCSIFDGKQLPIISIRHA-----------AEFF 205 (307)
T ss_dssp C-------CCCEEECSHHHHHHHHHHHHHHCSEEEEEECCC--SEEEEEEEETTEECCCEEEEEE-----------EEEE
T ss_pred CCC---CCCCEEEeCCHHHHHHHHHHHHhcCCCEEEECCcC--CEEEEEEEECCEEeeEEEEEcC-----------Cccc
Confidence 864 46789999999888643 67899999996 8999999999987432 21111 1122
Q ss_pred eecCcc-cccccCCcCCCCccccCCCChHHHHHHHHHHHHHhCCc-eeEEeEEEeCCCCCeEEEEeccCCCCCCCccc--
Q 024006 177 RFPRVS-CAAASADDADLDPCVAELPPRPLLERLAKELRRQLGLR-LFNLDIIREHGTRDQFYVIDINYFPGYGKMPE-- 252 (274)
Q Consensus 177 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~lA~~~~~~lGl~-l~G~Dvi~~~~~g~~~~ViDVN~fPg~~g~~~-- 252 (274)
++.... ..|....+..++++. .++++++|.++.++||+. ++++|+++++ | ++|++|||..||+.+..-
T Consensus 206 ~~~~~~~~~g~~~~p~~l~~~~-----~~~i~~~a~~~~~~lg~~G~~~vD~~~~~--g-~~~vlEiN~rpg~~~~s~~~ 277 (307)
T 3r5x_A 206 DYNAKYDDASTIEEVIELPAEL-----KERVNKASLACYKALKCSVYARVDMMVKD--G-IPYVMEVNTLPGMTQASLLP 277 (307)
T ss_dssp TTEEEEEEEEEEEEECCCCHHH-----HHHHHHHHHHHHHHTTCCSEEEEEEEEET--T-EEEEEEEESSCCCSTTSHHH
T ss_pred ChhhcCCCCCCeEecCCCCHHH-----HHHHHHHHHHHHHHhCCCceEEEEEEEEC--C-eEEEEEEcCCCCCCccCHHH
Confidence 222211 111111122222221 346899999999999999 8999999983 4 699999999999987533
Q ss_pred ---------chHHHHHHHHHHHHhh
Q 024006 253 ---------YEHIFTDFLLSLTQSR 268 (274)
Q Consensus 253 ---------~~~~l~~~l~~~~~~~ 268 (274)
+.+++.+.|...++++
T Consensus 278 ~~~~~~G~~~~~li~~ll~~a~~~~ 302 (307)
T 3r5x_A 278 KSADAAGIHYSKLLDMIIETSLRVR 302 (307)
T ss_dssp HHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHhH
Confidence 3455556665555544
No 9
>1uc8_A LYSX, lysine biosynthesis enzyme; alpha-aminoadipate pathway, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.00A {Thermus thermophilus} SCOP: c.30.1.6 d.142.1.7 PDB: 1uc9_A*
Probab=99.88 E-value=8.7e-22 Score=174.73 Aligned_cols=187 Identities=15% Similarity=0.212 Sum_probs=132.9
Q ss_pred HHHHHHHHhCCCcEEeCcHHHHHHhcCHHHHHHHHHhccccCCCCCccCCCEEEEecCCCChhHHHHhcCCCCcEEEeeC
Q 024006 25 QILEEYRQTHPEVTVLDPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPL 104 (274)
Q Consensus 25 ~~l~~y~~~~P~v~Vidp~~ai~~l~dR~~~~~~L~~~~~~~~~~~I~~P~~~~~~~~~~~~~~~l~~~~l~~P~VvKp~ 104 (274)
..++++.+.. +++++||+++++.++||..+.+.|++. ||++|++..+.+ .+++.+.+. .++||+|+||.
T Consensus 63 ~~~~~~l~~~-g~~~~~~~~~~~~~~dK~~~~~~l~~~-------gi~~p~~~~~~~-~~~~~~~~~--~~~~p~vvKp~ 131 (280)
T 1uc8_A 63 LAAARYLTAL-GIPVVNRPEVIEACGDKWATSVALAKA-------GLPQPKTALATD-REEALRLME--AFGYPVVLKPV 131 (280)
T ss_dssp HHHHHHHHHT-TCCEESCHHHHHHHHBHHHHHHHHHHT-------TCCCCCEEEESS-HHHHHHHHH--HHCSSEEEECS
T ss_pred HHHHHHHHHC-CCceeCCHHHHHHhCCHHHHHHHHHHc-------CcCCCCeEeeCC-HHHHHHHHH--HhCCCEEEEEC
Confidence 3555666653 678889999999999999999999986 899999998852 223333332 35799999999
Q ss_pred cCCCCccceeeEEEeChhhHhc----c-------CCCeEEEecccCCCeEEEEEEECCEEEEEEEecCCCCcccccccCC
Q 024006 105 VADGSAKSHELSLAYDQYSLKK----L-------EPPLVLQEFVNHGGVLFKVYIVGEAIKVVRRFSLPDVTKQDLSTSA 173 (274)
Q Consensus 105 ~a~Gs~~sh~m~iv~~~~~l~~----l-------~~p~vvQefI~h~g~~~KV~VIG~~v~~~~R~S~p~~~~~~~~~~~ 173 (274)
.++| |.++.++.+.+++.+ + +.++++||||+..+.+++++++|++++++..+...++ ..+
T Consensus 132 ~g~~---~~gv~~v~~~~el~~~~~~~~~~~~~~~~~~lvqe~i~~~~~e~~v~v~~~~~~~~~~~~~~~~-----~~~- 202 (280)
T 1uc8_A 132 IGSW---GRLLAXXXXXXXXXXXXXXKEVLGGFQHQLFYIQEYVEKPGRDIRVFVVGERAIAAIYRRSAHW-----ITN- 202 (280)
T ss_dssp BCCB---CSHHHHHHHHHC------------CTTTTCEEEEECCCCSSCCEEEEEETTEEEEEEEC--------------
T ss_pred CCCC---cccceecccccccchhhhhHhhhcccCCCcEEEEeccCCCCceEEEEEECCEEEEEEEEecCCc-----ccc-
Confidence 9653 567878888877653 1 4689999999877899999999999876543321222 211
Q ss_pred ceeeecCcccccccCCcCCCCccccCCCChHHHHHHHHHHHHHhCCceeEEeEEEeCCCCCeEEEEeccCCCCCCCcc
Q 024006 174 GVFRFPRVSCAAASADDADLDPCVAELPPRPLLERLAKELRRQLGLRLFNLDIIREHGTRDQFYVIDINYFPGYGKMP 251 (274)
Q Consensus 174 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lA~~~~~~lGl~l~G~Dvi~~~~~g~~~~ViDVN~fPg~~g~~ 251 (274)
++ ..+ ...+.. + .++++++|.++.++||+.++|+|++++.+ | ++++|||..||+.++.
T Consensus 203 ----~~---~g~-~~~p~~-------l--~~~~~~~~~~~~~~lg~g~~~vD~~~~~~-g--~~~iEiN~r~g~~~~~ 260 (280)
T 1uc8_A 203 ----TA---RGG-QAENCP-------L--TEEVARLSVKAAEAVGGGVVAVDLFESER-G--LLVNEVNHTMEFKNSV 260 (280)
T ss_dssp --------------CEECC-------C--CHHHHHHHHHHHHHTTCSEEEEEEEEETT-E--EEEEEEETTCCCTTHH
T ss_pred ----cc---CCc-cccCCC-------C--CHHHHHHHHHHHHHhCCCeEEEEEEEeCC-C--eEEEEEeCCCCccchh
Confidence 11 111 111111 1 24789999999999999999999999853 3 8999999999998764
No 10
>3se7_A VANA; alpha-beta structure, D-alanine-D-lactate ligase, ligase; HET: ATP; 3.07A {}
Probab=99.88 E-value=1.7e-21 Score=180.46 Aligned_cols=191 Identities=19% Similarity=0.273 Sum_probs=133.4
Q ss_pred HHHHHHHhCCCcEEeCc-HHHHHHhcCHHHHHHHHHhccccCCCCCccCCCEEEEecCCCChhHHHHhcCCCCcEEEeeC
Q 024006 26 ILEEYRQTHPEVTVLDP-PYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPL 104 (274)
Q Consensus 26 ~l~~y~~~~P~v~Vidp-~~ai~~l~dR~~~~~~L~~~~~~~~~~~I~~P~~~~~~~~~~~~~~~l~~~~l~~P~VvKp~ 104 (274)
.+|.+.+. -+++++.| +.++..++||..+.+.|++. ||++|++..+.+..... ...++||+|+||.
T Consensus 107 ~iq~~le~-~gip~~g~~~~a~~~~~dK~~~k~~l~~~-------Gip~p~~~~~~~~~~~~-----~~~lg~PvvvKP~ 173 (346)
T 3se7_A 107 AIQGLLEL-SGIPYVGCDIQSSALCMDKSLTYLVARSA-------GIATPNFWTVTADEKIP-----TDQLTYPVFVKPA 173 (346)
T ss_dssp HHHHHHHH-HCCCBSSCCHHHHHHHHSHHHHHHHHHHT-------TCBCCCEEEEETTSCCC-----TTTCCSSEEEEES
T ss_pred HHHHHHHH-cCCCeeCcCHHHHHHHhCHHHHHHHHHHc-------CcCcCCEEEEcCcHHHH-----HHhcCCCEEEEeC
Confidence 45556554 36777765 89999999999999999986 89999999996443111 2468999999999
Q ss_pred cCCCCccceeeEEEeChhhHhc-------cCCCeEEEecccCCCeEEEEEEECC----EEEEEEEecCCCCcccccccCC
Q 024006 105 VADGSAKSHELSLAYDQYSLKK-------LEPPLVLQEFVNHGGVLFKVYIVGE----AIKVVRRFSLPDVTKQDLSTSA 173 (274)
Q Consensus 105 ~a~Gs~~sh~m~iv~~~~~l~~-------l~~p~vvQefI~h~g~~~KV~VIG~----~v~~~~R~S~p~~~~~~~~~~~ 173 (274)
.++| |.++.++.++++|.. .+.++++||||+ |+++.|.|+|+ .+....+.. ...
T Consensus 174 ~~~~---s~Gv~~v~~~~el~~a~~~~~~~~~~vlvEe~I~--G~E~~v~vl~~~~~~~~~~~~e~~----------~~~ 238 (346)
T 3se7_A 174 RSGS---SFGVSKVAREEDLQGAVEAAREYDSKVLIEEAVI--GTEIGCAVMGNGPELITGEVDQIT----------LSH 238 (346)
T ss_dssp SCCT---TTTCEEECSHHHHHHHHHHHTTTCSEEEEEECCC--SEEEEEEEEEETTEEEECCCEEEC----------CC-
T ss_pred CCCC---CcCEEEECCHHHHHHHHHHHHhCCCcEEEEeCcC--CEEEEEEEEecCCCeEEEeeEEEe----------cCC
Confidence 8643 678999999988864 367899999996 99999999987 332222221 123
Q ss_pred ceeee----cCcccccccC--CcCCCCccccCCCChHHHHHHHHHHHHHhCCc-eeEEeEEEeCCCCCeEEEEeccCCCC
Q 024006 174 GVFRF----PRVSCAAASA--DDADLDPCVAELPPRPLLERLAKELRRQLGLR-LFNLDIIREHGTRDQFYVIDINYFPG 246 (274)
Q Consensus 174 g~~~~----~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~lA~~~~~~lGl~-l~G~Dvi~~~~~g~~~~ViDVN~fPg 246 (274)
++|+| ...+..+... .+..++++. .++++++|.++.++||+. ++++|++++. +| ++|++|||..||
T Consensus 239 ~~~d~~q~~~~ky~~~~~~~~~pa~l~~~~-----~~~i~~~a~~~~~~lg~~G~~~vD~~~~~-~g-~~~vlEiN~rPG 311 (346)
T 3se7_A 239 GFFKIHQESTPESGSDNSAVTVPADISTTS-----RSLVQDTAKAVYRALGCRGLSRVDLFLTE-DG-KVVLNEVNTFPG 311 (346)
T ss_dssp -------------CGGGSCEESSCCCCHHH-----HHHHHHHHHHHHHHHTCCEEEEEEEEECT-TS-CEEEEEEESSCC
T ss_pred CCcCcccchhccccCCCeeEEeCCCCCHHH-----HHHHHHHHHHHHHHhCCceEEEEEEEEeC-CC-CEEEEEEeCCCC
Confidence 45666 4333222111 111222211 357899999999999995 8889999985 35 699999999999
Q ss_pred CCCcc
Q 024006 247 YGKMP 251 (274)
Q Consensus 247 ~~g~~ 251 (274)
+++..
T Consensus 312 ~t~~s 316 (346)
T 3se7_A 312 MTSYS 316 (346)
T ss_dssp CSTTC
T ss_pred CCccc
Confidence 98764
No 11
>4fu0_A D-alanine--D-alanine ligase 7; vancomycin resistance, peptidoglycan synthesis, D-Ala:D-Ser ATP-grAsp domain; HET: ADP; 2.35A {Enterococcus faecalis}
Probab=99.87 E-value=6.2e-22 Score=184.47 Aligned_cols=198 Identities=17% Similarity=0.271 Sum_probs=139.4
Q ss_pred HHHHHHHhCCCcEEe-CcHHHHHHhcCHHHHHHHHHhccccCCCCCccCCCEEEEecCCCC-hhHHHHhcCCCCcEEEee
Q 024006 26 ILEEYRQTHPEVTVL-DPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASS-IPDVVLKAGLTLPLVAKP 103 (274)
Q Consensus 26 ~l~~y~~~~P~v~Vi-dp~~ai~~l~dR~~~~~~L~~~~~~~~~~~I~~P~~~~~~~~~~~-~~~~l~~~~l~~P~VvKp 103 (274)
.+|.+.+. -+++.+ -++.++..++||..+-+.|++. ||++|++..+.+...+ ..+. ....++||+|+||
T Consensus 114 ~~q~~le~-~gip~~G~~~~a~~~~~DK~~~k~~l~~~-------Gip~p~~~~~~~~~~~~~~~~-~~~~lg~PvvVKP 184 (357)
T 4fu0_A 114 TLQGIFEL-AGIPVVGCDTLSSALCMDKDRAHKLVSLA-------GISVPKSVTFKRFNEEAAMKE-IEANLTYPLFIKP 184 (357)
T ss_dssp HHHHHHHH-TTCCBSSCCHHHHHHHHCHHHHHHHHHHT-------TCBCCCEEEEEGGGHHHHHHH-HHHHCCSSEEEEE
T ss_pred HHHHHHHH-CCCcEECcCHHHHHHHhCHHHHHHHHHHC-------CCCCCCEEeecCCChHHHHHH-HHHhcCCCEEEEE
Confidence 46666665 356665 6788999999999999999986 8999999988543211 1111 1346899999999
Q ss_pred CcCCCCccceeeEEEeChhhHhc-------cCCCeEEEecccCCCeEEEEEEECCEEEEEEEecCCCCcccccccCCcee
Q 024006 104 LVADGSAKSHELSLAYDQYSLKK-------LEPPLVLQEFVNHGGVLFKVYIVGEAIKVVRRFSLPDVTKQDLSTSAGVF 176 (274)
Q Consensus 104 ~~a~Gs~~sh~m~iv~~~~~l~~-------l~~p~vvQefI~h~g~~~KV~VIG~~v~~~~R~S~p~~~~~~~~~~~g~~ 176 (274)
..++ + |.+|.++.++++|.+ .+.++++|+|| .|+++.|.|+|+....+. +- .+.....++|
T Consensus 185 ~~gg-~--s~Gv~~v~~~~el~~~~~~a~~~~~~vlvE~~i--~G~e~~v~vl~~~~~~~~----~v---~~~~~~~~~~ 252 (357)
T 4fu0_A 185 VRAG-S--SFGITKVIEKQELDAAIELAFEHDTEVIVEETI--NGFEVGCAVLGIDELIVG----RV---DEIELSSGFF 252 (357)
T ss_dssp TTCS-S--STTCEEESSHHHHHHHHHHHTTTCSEEEEEECC--CSEEEEEEEEESSSEEEC----CC---EEEEECHHHH
T ss_pred CCCC-C--CCceEEeccHHhHHHHHHHHhccCCeEEEEEec--CCEEEEEEEEecCCceEE----EE---EEEEcccccc
Confidence 8854 3 678999999999865 26689999999 599999999988632211 10 0111123345
Q ss_pred eecCccccccc--CCcCCCCccccCCCChHHHHHHHHHHHHHhCCc-eeEEeEEEeCCCCCeEEEEeccCCCCCCCcc
Q 024006 177 RFPRVSCAAAS--ADDADLDPCVAELPPRPLLERLAKELRRQLGLR-LFNLDIIREHGTRDQFYVIDINYFPGYGKMP 251 (274)
Q Consensus 177 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~lA~~~~~~lGl~-l~G~Dvi~~~~~g~~~~ViDVN~fPg~~g~~ 251 (274)
++..+...+.. ..+..++++. .++++++|.++.++||+. ++++|++++. +| ++||+|||..|||+...
T Consensus 253 d~~~k~~~~~~~~~~pa~l~~~~-----~~~i~~~A~~~~~aLg~~G~~~VDf~~~~-dg-~~~vlEvNt~PG~t~~S 323 (357)
T 4fu0_A 253 DYTEKYTLKSSKIYMPARIDAEA-----EKRIQEAAVTIYKALGCSGFSRVDMFYTP-SG-EIVFNEVNTIPGFTSHS 323 (357)
T ss_dssp TSCSBCSSCCEEEESSCSCCHHH-----HHHHHHHHHHHHHHTTCCEEEEEEEEECT-TC-CEEEEEEESSCCCSTTC
T ss_pred cccccccCCCceEecCCCCCHHH-----HHHHHHHHHHHHHHhCCcceEEEEEEEeC-CC-CEEEEEEeCCCCCCccc
Confidence 55544432211 1122333322 457899999999999997 7779999985 55 69999999999998654
No 12
>2fb9_A D-alanine:D-alanine ligase; 1.90A {Thermus caldophilus} PDB: 2zdh_A* 2yzg_A 2yzn_A* 2yzm_A* 2zdg_A* 2zdq_A*
Probab=99.87 E-value=1.3e-20 Score=173.02 Aligned_cols=188 Identities=15% Similarity=0.210 Sum_probs=135.0
Q ss_pred HHHHHHhCCCcEEeC-cHHHHHHhcCHHHHHHHHHhccccCCCCCccCCCEEEEecCCCChhHHHHhcCCCCcEEEeeCc
Q 024006 27 LEEYRQTHPEVTVLD-PPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLV 105 (274)
Q Consensus 27 l~~y~~~~P~v~Vid-p~~ai~~l~dR~~~~~~L~~~~~~~~~~~I~~P~~~~~~~~~~~~~~~l~~~~l~~P~VvKp~~ 105 (274)
++...+. -+++++. +++++..++||..+.+.|++. ||++|++..+.+.+++ . ..++||+|+||..
T Consensus 94 i~~~le~-~gip~~g~~~~~~~~~~dK~~~k~~l~~~-------Gip~p~~~~~~~~~~~--~----~~~g~PvvvKP~~ 159 (322)
T 2fb9_A 94 VQGFLEL-LGKPYVGAGVAASALCMDKDLSKRVLAQA-------GVPVVPWVAVRKGEPP--V----VPFDPPFFVKPAN 159 (322)
T ss_dssp HHHHHHH-HTCCBSSCCHHHHHHHHCHHHHHHHHHHT-------TCCCCCEEEEETTSCC--C----CCSCSCEEEEETT
T ss_pred HHHHHHH-cCCCeeCcCHHHHHHHcCHHHHHHHHHHC-------CCCCCCEEEEECchhh--h----hccCCCEEEEeCC
Confidence 3444443 2577775 499999999999999999986 8999999998644321 1 1688999999999
Q ss_pred CCCCccceeeEEEeChhhHhcc-------CCCeEEEecccCCC-eEEEEEEECCE---EEEEEEecCCCCcccccccCCc
Q 024006 106 ADGSAKSHELSLAYDQYSLKKL-------EPPLVLQEFVNHGG-VLFKVYIVGEA---IKVVRRFSLPDVTKQDLSTSAG 174 (274)
Q Consensus 106 a~Gs~~sh~m~iv~~~~~l~~l-------~~p~vvQefI~h~g-~~~KV~VIG~~---v~~~~R~S~p~~~~~~~~~~~g 174 (274)
++| |.++.++.++++|... +.++++||||+ | +++.|.|+|++ +....+... ..+
T Consensus 160 g~~---s~Gv~~v~~~~el~~a~~~~~~~~~~vlvEe~I~--G~~E~~v~vl~~~~~~~~~~~ei~~----------~~~ 224 (322)
T 2fb9_A 160 TGS---SVGISRVERFQDLEAALALAFRYDEKAVVEKALS--PVRELEVGVLGNVFGEASPVGEVRY----------EAP 224 (322)
T ss_dssp CCT---TTTCEEESSHHHHHHHHHHHTTTCSEEEEEECCS--SCEEEEEEEESSSSCEEEEEEEEEE----------ECC
T ss_pred CCC---CCCEEEECCHHHHHHHHHHHHhcCCeEEEEeCCC--CCeeEEEEEEeCCCceEeeeEEEee----------CCC
Confidence 653 5689999999888642 56899999995 7 99999999985 333222211 123
Q ss_pred eeeecCcccccccC--CcCCCCccccCCCChHHHHHHHHHHHHHhCC-ceeEEeEEEeCCCCCeEEEEeccCCCCCCCcc
Q 024006 175 VFRFPRVSCAAASA--DDADLDPCVAELPPRPLLERLAKELRRQLGL-RLFNLDIIREHGTRDQFYVIDINYFPGYGKMP 251 (274)
Q Consensus 175 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~lA~~~~~~lGl-~l~G~Dvi~~~~~g~~~~ViDVN~fPg~~g~~ 251 (274)
+|+|......+... .+..++++. .++++++|.++.++||+ .++++|++++ +| ++|++|||..||+....
T Consensus 225 ~~~~~~k~~~g~~~~~~Pa~l~~~~-----~~~i~~~a~~~~~alg~~G~~~vD~~~~--~g-~~~vlEiN~rpg~t~~s 296 (322)
T 2fb9_A 225 FYDYETKYTPGRAELLIPAPLDPGT-----QETVQELALKAYKVLGVRGMARVDFFLA--EG-ELYLNELNTIPGFTPTS 296 (322)
T ss_dssp EEETTTEEECCEEEEESSCCCCTTH-----HHHHHHHHHHHHHHHTCCSEEEEEEEEE--TT-EEEEEEEESSCCCSSSC
T ss_pred ccCHHHcccCCCeEEEeCCCCCHHH-----HHHHHHHHHHHHHHhCCceEEEEEEEEE--CC-cEEEEEEECCCCCCccc
Confidence 44544433222110 122232221 45789999999999999 6889999998 35 69999999999998764
No 13
>3tqt_A D-alanine--D-alanine ligase; cell envelope; 1.88A {Coxiella burnetii}
Probab=99.87 E-value=5e-21 Score=179.97 Aligned_cols=213 Identities=11% Similarity=0.155 Sum_probs=138.3
Q ss_pred heeeeeccCcHHHHHHHHHHHHhCCCcEEe-CcHHHHHHhcCHHHHHHHHHhccccCCCCCccCCCEEEEecCCC-C-hh
Q 024006 11 SFSFLMQLTGKEWRQILEEYRQTHPEVTVL-DPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDAS-S-IP 87 (274)
Q Consensus 11 ~~~ilHK~~~~~~~~~l~~y~~~~P~v~Vi-dp~~ai~~l~dR~~~~~~L~~~~~~~~~~~I~~P~~~~~~~~~~-~-~~ 87 (274)
-|-+||=..+.. ..+|.+++. -+++++ .++.+...++||..+.+.|++. ||++|++..+.+.+. . ..
T Consensus 102 vf~~lhG~~gEd--g~iq~lle~-~gipy~G~~~~a~~~~~DK~~~k~~l~~~-------GIp~p~~~~~~~~~~~~~~~ 171 (372)
T 3tqt_A 102 VFPMVHGTQGED--GALQGLLEL-LNLPYVGANVQSSAVCMEKDLTKTVLRAG-------GIPVVDWHTLSPRDATEGVY 171 (372)
T ss_dssp EEECCCSTTTTS--SHHHHHHHH-TTCCBSSCCHHHHHHHHSHHHHHHHHHHT-------TCCBCCCEEECTTSCCTTHH
T ss_pred EEEcCCCCCCcC--HHHHHHHHH-cCCCeeCcCHHHHHHHhCHHHHHHHHHHC-------CcCCCCEEEEechhhhhhHH
Confidence 455566555432 145666665 367776 5688999999999999999986 899999999964332 1 11
Q ss_pred HHHHhcCCCCc-EEEeeCcCCCCccceeeEEEeChhhHhc-------cCCCeEEEecccCCCeEEEEEEECCEEEEEEEe
Q 024006 88 DVVLKAGLTLP-LVAKPLVADGSAKSHELSLAYDQYSLKK-------LEPPLVLQEFVNHGGVLFKVYIVGEAIKVVRRF 159 (274)
Q Consensus 88 ~~l~~~~l~~P-~VvKp~~a~Gs~~sh~m~iv~~~~~l~~-------l~~p~vvQefI~h~g~~~KV~VIG~~v~~~~R~ 159 (274)
... ...++|| +|+||..++ | |.+|.++.++++|.. .+.++++||||+ |+++.|.|+|+... +.
T Consensus 172 ~~~-~~~lg~P~vvVKP~~gg-s--s~Gv~~v~~~~eL~~a~~~a~~~~~~vlVEe~I~--G~E~~v~vl~~~~~---~~ 242 (372)
T 3tqt_A 172 QRL-LDRWGTSELFVKAVSLG-S--SVATLPVKTETEFTKAVKEVFRYDDRLMVEPRIR--GREIECAVLGNGAP---KA 242 (372)
T ss_dssp HHH-HHHC---CEEEEESSCC-S--GGGEEEECSHHHHHHHHHHHTTTCSCEEEEECCC--SEEEEEEEEESSSC---EE
T ss_pred HHH-HHhcCCCeEEEEECCCC-C--CCCEEEECCHHHHHHHHHHHHhcCCCEEEECCCC--CEEEEEEEEeCCCc---eE
Confidence 111 2458999 999999864 3 778999999998864 267899999996 89999999998621 11
Q ss_pred cCCCCcccccccCCceeeecCcccccc-c--CCcCCCCccccCCCChHHHHHHHHHHHHHhCCc-eeEEeEEEeCCCCCe
Q 024006 160 SLPDVTKQDLSTSAGVFRFPRVSCAAA-S--ADDADLDPCVAELPPRPLLERLAKELRRQLGLR-LFNLDIIREHGTRDQ 235 (274)
Q Consensus 160 S~p~~~~~~~~~~~g~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~lA~~~~~~lGl~-l~G~Dvi~~~~~g~~ 235 (274)
++ ..++....++|+|...+..+. . ..+..++++. .++++++|.++.++||+. ++++|++++. +| +
T Consensus 243 -~~---~~ei~~~~~~~d~~~ky~~g~~~~~~~Pa~l~~~~-----~~~i~~~a~~~~~aLg~~G~~rvDf~~~~-dg-~ 311 (372)
T 3tqt_A 243 -SL---PGEIIPHHDYYSYDAKYLDPNGATTTTSVDLSESV-----TKQIQQIAIDAFKMVHCSGMARVDFFVTP-NN-K 311 (372)
T ss_dssp -CC---CEEEECC---------------CEEESCCCCCHHH-----HHHHHHHHHHHHHHTTCCEEEEEEEEECT-TC-C
T ss_pred -ee---eEEEecCCCccchhhcccCCCceEEEeCCCCCHHH-----HHHHHHHHHHHHHHhCCccEEEEEEEEeC-CC-c
Confidence 11 112222345667665543221 1 1112233222 457899999999999998 7789999985 45 6
Q ss_pred EEEEeccCCCCCCCcccc
Q 024006 236 FYVIDINYFPGYGKMPEY 253 (274)
Q Consensus 236 ~~ViDVN~fPg~~g~~~~ 253 (274)
+|++|||..|||+...-+
T Consensus 312 ~~vlEINt~PG~t~~S~~ 329 (372)
T 3tqt_A 312 VLVNEINTIPGFTNISMY 329 (372)
T ss_dssp EEEEEEESSCCCSTTCHH
T ss_pred EEEEEEECCCCcCccCHH
Confidence 999999999999876433
No 14
>1iow_A DD-ligase, DDLB, D-ALA\:D-Ala ligase; glycogen phosphorylase, cell WALL, peptidoglycan synthesis, vancomycin, ADP binding; HET: ADP PHY; 1.90A {Escherichia coli} SCOP: c.30.1.2 d.142.1.1 PDB: 1iov_A* 2dln_A* 3v4z_A*
Probab=99.86 E-value=6.2e-21 Score=171.75 Aligned_cols=184 Identities=17% Similarity=0.240 Sum_probs=130.8
Q ss_pred CcEEe-CcHHHHHHhcCHHHHHHHHHhccccCCCCCccCCCEEEEecCCCChhHH-----H-HhcCCCCcEEEeeCcCCC
Q 024006 36 EVTVL-DPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDV-----V-LKAGLTLPLVAKPLVADG 108 (274)
Q Consensus 36 ~v~Vi-dp~~ai~~l~dR~~~~~~L~~~~~~~~~~~I~~P~~~~~~~~~~~~~~~-----l-~~~~l~~P~VvKp~~a~G 108 (274)
+++++ +++++++.++||..+.+.|++. ||++|++..+.+. +..+. . ....++||+|+||..|+
T Consensus 80 g~~~~g~~~~~~~~~~dK~~~~~~l~~~-------gi~~p~~~~~~~~--~~~~~~~~~~~~~~~~~~~p~vvKP~~g~- 149 (306)
T 1iow_A 80 GLPYTGSGVMASALSMDKLRSKLLWQGA-------GLPVAPWVALTRA--EFEKGLSDKQLAEISALGLPVIVKPSREG- 149 (306)
T ss_dssp TCCBSSCCHHHHHHHHCHHHHHHHHHHT-------TCCBCCEEEEEHH--HHHHCCCTHHHHHHHTTCSSEEEEETTCC-
T ss_pred CCCccCCCHHHHHHHcCHHHHHHHHHHC-------CCCCCCeEEEchh--hhhccchhhhhhHHhccCCCEEEEeCCCC-
Confidence 56766 8899999999999999999986 8999999988533 22210 0 12357899999999965
Q ss_pred CccceeeEEEeChhhHhc-------cCCCeEEEecccCCCeEEEEEEECCEEEEEEEecCCCCcccccccCCceeeecCc
Q 024006 109 SAKSHELSLAYDQYSLKK-------LEPPLVLQEFVNHGGVLFKVYIVGEAIKVVRRFSLPDVTKQDLSTSAGVFRFPRV 181 (274)
Q Consensus 109 s~~sh~m~iv~~~~~l~~-------l~~p~vvQefI~h~g~~~KV~VIG~~v~~~~R~S~p~~~~~~~~~~~g~~~~~~~ 181 (274)
+|.++.++.+.+++.. .+.++++||||+ |++++|.++|+++....+.... .+++++...
T Consensus 150 --~~~gv~~v~~~~el~~~~~~~~~~~~~~lvee~i~--g~e~~v~~~~g~~~~~~~~~~~----------~~~~~~~~~ 215 (306)
T 1iow_A 150 --SSVGMSKVVAENALQDALRLAFQHDEEVLIEKWLS--GPEFTVAILGEEILPSIRIQPS----------GTFYDYEAK 215 (306)
T ss_dssp --TTTTCEEESSGGGHHHHHHHHTTTCSEEEEEECCC--CCEEEEEEETTEECCCEEEECS----------SSSSCHHHH
T ss_pred --CCCCEEEeCCHHHHHHHHHHHHhhCCCEEEEeCcC--CEEEEEEEECCCccceEEEEeC----------CCeEchhhe
Confidence 3578999999988764 257899999996 8999999999987544333211 122222111
Q ss_pred ccccccC--CcCCCCccccCCCChHHHHHHHHHHHHHhCCc-eeEEeEEEeCCCCCeEEEEeccCCCCCCCc
Q 024006 182 SCAAASA--DDADLDPCVAELPPRPLLERLAKELRRQLGLR-LFNLDIIREHGTRDQFYVIDINYFPGYGKM 250 (274)
Q Consensus 182 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~lA~~~~~~lGl~-l~G~Dvi~~~~~g~~~~ViDVN~fPg~~g~ 250 (274)
...|... .+..++++. .++++++|.++.++||+. ++++|++++. +| +++++|||..||+.+.
T Consensus 216 ~~~g~~~~~~p~~l~~~~-----~~~i~~~a~~~~~~lg~~G~~~vD~~~~~-~g-~~~~iEiN~rpg~~~~ 280 (306)
T 1iow_A 216 FLSDETQYFCPAGLEASQ-----EANLQALVLKAWTTLGCKGWGRIDVMLDS-DG-QFYLLEANTSPGMTSH 280 (306)
T ss_dssp HTCSCCEEESSCCCCHHH-----HHHHHHHHHHHHHHHTCCSEEEEEEEECT-TS-CEEEEEEESSCCCSTT
T ss_pred ecCCCeeEEcCCCCCHHH-----HHHHHHHHHHHHHHcCCceEEEEEEEEcC-CC-CEEEEEecCCCCCCCC
Confidence 1111110 111122111 356889999999999997 8999999975 45 6899999999999875
No 15
>3k3p_A D-alanine--D-alanine ligase; D-alanyl-alanine synthetase, ATP-binding, cell shape, cell W biogenesis/degradation, magnesium, manganese; 2.23A {Streptococcus mutans}
Probab=99.86 E-value=5.4e-21 Score=180.39 Aligned_cols=211 Identities=16% Similarity=0.264 Sum_probs=135.6
Q ss_pred hheeeeeccCcHHHHHHHHHHHHhCCCcEEe-CcHHHHHHhcCHHHHHHHHHhccccCCCCC-ccCCCEEEEecCCC---
Q 024006 10 VSFSFLMQLTGKEWRQILEEYRQTHPEVTVL-DPPYAIQHLHNRQSMLQCVADMNLSNSYGK-VDVPRQLVIERDAS--- 84 (274)
Q Consensus 10 ~~~~ilHK~~~~~~~~~l~~y~~~~P~v~Vi-dp~~ai~~l~dR~~~~~~L~~~~~~~~~~~-I~~P~~~~~~~~~~--- 84 (274)
+-|-+||=-.+.. ..+|.+.+. -+++++ .++.+...++||..+.+.|++. | |++|++..+.+..+
T Consensus 122 ~vf~~lhG~~GEd--g~iq~lle~-~gipy~G~~~~a~~~~~DK~~~k~~l~~~-------G~Ipvp~~~~~~~~~~~~~ 191 (383)
T 3k3p_A 122 VVFPVLHGPMGED--GSIQGFLEV-LKMPYVGTNILSSSVAMDKITTNQVLESA-------TTIPQVAYVALIEGEPLES 191 (383)
T ss_dssp EEEEECCSTTTSS--SHHHHHHHH-TTCCBSSCCHHHHHHHHCHHHHHHHHHHH-------CCCCBCCEEEEETTSCHHH
T ss_pred EEEEcCCCCCcch--HHHHHHHHH-cCCCccCCCHHHHHHHhCHHHHHHHHHhC-------CCcCCCCEEEEeCccchhH
Confidence 4567777766532 135556655 356666 5789999999999999999996 8 99999999964331
Q ss_pred ChhHHHHhcCCCCcEEEeeCcCCCCccceeeEEEeChhhHhc-------cCCCeEEEecccCCCeEEEEEEECCEEEEEE
Q 024006 85 SIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKK-------LEPPLVLQEFVNHGGVLFKVYIVGEAIKVVR 157 (274)
Q Consensus 85 ~~~~~l~~~~l~~P~VvKp~~a~Gs~~sh~m~iv~~~~~l~~-------l~~p~vvQefI~h~g~~~KV~VIG~~v~~~~ 157 (274)
+..+ ....++||+|+||..++ + |.++.++.++++|.+ .+.++++||||+ |+++.|.|+|+....
T Consensus 192 ~~~~--~~~~lg~PvvVKP~~gg-s--s~GV~~v~~~~el~~al~~a~~~~~~vlVEe~I~--G~E~~v~vl~d~~~~-- 262 (383)
T 3k3p_A 192 KLAE--VEEKLIYPVFVKPANMG-S--SVGISKAENRTDLKQAIALALKYDSRVLIEQGVD--AREIEVGILGNTDVK-- 262 (383)
T ss_dssp HHHH--HHHHCCSSEEEEECC---------CEEESSHHHHHHHHHHHHHHCSEEEEEECCC--SEEEEEEEEESSSCE--
T ss_pred HHHH--HHHhcCCCEEEEeCCCC-C--CCCEEEECCHHHHHHHHHHHHhCCCeEEEEcCCC--CeEEEEEEEeCCCee--
Confidence 1112 12458999999999864 3 778999999998864 267899999995 999999999875211
Q ss_pred EecCCCCcccccccCCceeeecCcccccccC--CcCCCCccccCCCChHHHHHHHHHHHHHhCCc-eeEEeEEEeCCCCC
Q 024006 158 RFSLPDVTKQDLSTSAGVFRFPRVSCAAASA--DDADLDPCVAELPPRPLLERLAKELRRQLGLR-LFNLDIIREHGTRD 234 (274)
Q Consensus 158 R~S~p~~~~~~~~~~~g~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~lA~~~~~~lGl~-l~G~Dvi~~~~~g~ 234 (274)
.+.+ .++....++|+|...+..+... .+..++++. .++++++|.++.++||+. ++++|++++. +|
T Consensus 263 -~~~~----~ei~~~~~~~d~~~ky~~g~~~~~~Pa~l~~~~-----~~~i~~~a~~~~~aLg~~G~~~vDf~~~~-~g- 330 (383)
T 3k3p_A 263 -TTLP----GEIVKDVAFYDYEAKYIDNKITMAIPAEIDPVI-----VEKMRDYAATAFRTLGCCGLSRCDFFLTE-DG- 330 (383)
T ss_dssp -ECCC----EEEC-----------------CEESSCCCCHHH-----HHHHHHHHHHHHHHTTCCEEEEEEEEECT-TC-
T ss_pred -EEee----EEEecCCCccchhhcccCCCeeEEecCCCCHHH-----HHHHHHHHHHHHHHcCCceEEEEEEEEEC-CC-
Confidence 1111 1222234567776655322111 112222222 457899999999999998 7889999985 45
Q ss_pred eEEEEeccCCCCCCCcc
Q 024006 235 QFYVIDINYFPGYGKMP 251 (274)
Q Consensus 235 ~~~ViDVN~fPg~~g~~ 251 (274)
++|++|||..||++...
T Consensus 331 ~~~vlEINtrPG~t~~S 347 (383)
T 3k3p_A 331 KVYLNELNTMPGFTQWS 347 (383)
T ss_dssp CEEEEEEESSCCCC--C
T ss_pred CEEEEEeeCCCCCCccc
Confidence 69999999999988653
No 16
>1ehi_A LMDDL2, D-alanine:D-lactate ligase; ATP-binding. grAsp motif for ATP.; HET: ADP PHY; 2.38A {Leuconostoc mesenteroides} SCOP: c.30.1.2 d.142.1.1
Probab=99.86 E-value=2.8e-20 Score=174.60 Aligned_cols=198 Identities=17% Similarity=0.245 Sum_probs=138.7
Q ss_pred HHHHHHHhCCCcEEe-CcHHHHHHhcCHHHHHHHHHhccccCCCCCccCCCEEEEecCCC---ChhHHHHhcCCCCcEEE
Q 024006 26 ILEEYRQTHPEVTVL-DPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDAS---SIPDVVLKAGLTLPLVA 101 (274)
Q Consensus 26 ~l~~y~~~~P~v~Vi-dp~~ai~~l~dR~~~~~~L~~~~~~~~~~~I~~P~~~~~~~~~~---~~~~~l~~~~l~~P~Vv 101 (274)
.++...+. -+++++ ++++++..++||..+.+.|++. ||++|++..+.+..+ ...+.. ..++||+|+
T Consensus 110 ~~~~lle~-~gip~~G~~~~a~~~~~DK~~~k~~l~~~-------Gip~p~~~~~~~~~~~~~~~~~~~--~~~g~PvvV 179 (377)
T 1ehi_A 110 TLQGLFKL-LDKPYVGAPLRGHAVSFDKALTKELLTVN-------GIRNTKYIVVDPESANNWSWDKIV--AELGNIVFV 179 (377)
T ss_dssp HHHHHHHH-TTCCBSSCCHHHHHHHHSHHHHHHHHHTT-------TCCCCCEEEECTTGGGGCCHHHHH--HHHCSCEEE
T ss_pred HHHHHHHH-cCCCEeCcCHHHHHHHcCHHHHHHHHHHc-------CCCCCCEEEEeccccchHHHHHHH--HhcCCCEEE
Confidence 34555554 367877 9999999999999999999986 899999999864321 122222 246899999
Q ss_pred eeCcCCCCccceeeEEEeChhhHhc-------cCCCeEEEecccCCC-eEEEEEEECCE---EEEEEEecCCCCcccccc
Q 024006 102 KPLVADGSAKSHELSLAYDQYSLKK-------LEPPLVLQEFVNHGG-VLFKVYIVGEA---IKVVRRFSLPDVTKQDLS 170 (274)
Q Consensus 102 Kp~~a~Gs~~sh~m~iv~~~~~l~~-------l~~p~vvQefI~h~g-~~~KV~VIG~~---v~~~~R~S~p~~~~~~~~ 170 (274)
||..++| |.++.++.++++|.. .+.++++||||+ | +++.|.|+|+. +....+...... .
T Consensus 180 KP~~~~~---s~Gv~~v~~~~el~~a~~~~~~~~~~vlvEe~I~--G~~E~~v~vl~~~~~~~~~~~ei~~~~~-----~ 249 (377)
T 1ehi_A 180 KAANQGS---SVGISRVTNAEEYTEALSDSFQYDYKVLIEEAVN--GARELEVGVIGNDQPLVSEIGAHTVPNQ-----G 249 (377)
T ss_dssp EESSCCT---TTTEEEECSHHHHHHHHHHHTTTCSCEEEEECCC--CSCEEEEEEEESSSCEEEEEEEEECTTS-----S
T ss_pred EeCCCCC---CcCEEEeCCHHHHHHHHHHHHhcCCcEEEEcCCC--CCceEEEEEEcCCCcEEEeeEEEEecCC-----C
Confidence 9999643 568999999988864 256899999995 7 99999999984 544433321100 0
Q ss_pred cCCceeeecCccccc-cc--CCcCCCCccccCCCChHHHHHHHHHHHHHhCCc-eeEEeEEEeCCCCCeEEEEeccCCCC
Q 024006 171 TSAGVFRFPRVSCAA-AS--ADDADLDPCVAELPPRPLLERLAKELRRQLGLR-LFNLDIIREHGTRDQFYVIDINYFPG 246 (274)
Q Consensus 171 ~~~g~~~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~lA~~~~~~lGl~-l~G~Dvi~~~~~g~~~~ViDVN~fPg 246 (274)
...++|+|......+ .. ..+..++++. .++++++|.++.++||+. ++++|++++. +| ++||+|||..||
T Consensus 250 ~~~~~~d~~~k~~~g~~~~~~~Pa~l~~~~-----~~~i~~~a~~~~~alg~~G~~~vD~~~~~-~g-~~~vlEiN~rpg 322 (377)
T 1ehi_A 250 SGDGWYDYNNKFVDNSAVHFQIPAQLSPEV-----TKEVKQMALDAYKVLNLRGEARMDFLLDE-NN-VPYLGEPNTLPG 322 (377)
T ss_dssp SSSCCCCHHHHTTCCTTCEEESSCCCCHHH-----HHHHHHHHHHHHHHTTCCEEEEEEEEECT-TC-CEEEEEEESSCC
T ss_pred CcCceeCHHhcccCCCCeeEEeCCCCCHHH-----HHHHHHHHHHHHHHcCCCcEEEEEEEEeC-CC-CEEEEEEeCCCC
Confidence 013455554332212 11 0112222221 356899999999999998 8889999975 35 589999999999
Q ss_pred CCCc
Q 024006 247 YGKM 250 (274)
Q Consensus 247 ~~g~ 250 (274)
+.+.
T Consensus 323 ~t~~ 326 (377)
T 1ehi_A 323 FTNM 326 (377)
T ss_dssp CSTT
T ss_pred CCcc
Confidence 8875
No 17
>2i87_A D-alanine-D-alanine ligase; APO; 2.00A {Staphylococcus aureus subsp} PDB: 2i8c_A* 3n8d_A* 2i80_A*
Probab=99.85 E-value=2.3e-20 Score=173.97 Aligned_cols=193 Identities=18% Similarity=0.208 Sum_probs=130.8
Q ss_pred HHHHHHhCCCcEEeCc-HHHHHHhcCHHHHHHHHHhccccCCCCCccCCCEEEEecCCC------ChhHHHHhcCCCCcE
Q 024006 27 LEEYRQTHPEVTVLDP-PYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDAS------SIPDVVLKAGLTLPL 99 (274)
Q Consensus 27 l~~y~~~~P~v~Vidp-~~ai~~l~dR~~~~~~L~~~~~~~~~~~I~~P~~~~~~~~~~------~~~~~l~~~~l~~P~ 99 (274)
++...+. -+++++.| ++++..++||..+.+.|++. ||++|++..+.+... ++.+.. ..++||+
T Consensus 105 ~~~~le~-~gip~~g~~~~~~~~~~dK~~~k~~l~~~-------Gip~p~~~~~~~~~~~~~~~~~~~~~~--~~~g~Pv 174 (364)
T 2i87_A 105 IQGLFEV-LDVPYVGNGVLSAASSMDKLVMKQLFEHR-------GLPQLPYISFLRSEYEKYEHNILKLVN--DKLNYPV 174 (364)
T ss_dssp HHHHHHH-HTCCBSSCCHHHHHHHHSHHHHHHHHHHH-------TCCCCCEEEEEHHHHHHHHHHHHHHHH--HHCCSSE
T ss_pred HHHHHHH-cCCCccCCCHHHHHHHcCHHHHHHHHHHC-------CCCCCCEEEEechhhcccchhHHHHHH--HhcCCCE
Confidence 3444443 25777765 89999999999999999986 899999999853310 111111 3578999
Q ss_pred EEeeCcCCCCccceeeEEEeChhhHhc-------cCCCeEEEecccCCCeEEEEEEECCE---EEEEEEecCCCCccccc
Q 024006 100 VAKPLVADGSAKSHELSLAYDQYSLKK-------LEPPLVLQEFVNHGGVLFKVYIVGEA---IKVVRRFSLPDVTKQDL 169 (274)
Q Consensus 100 VvKp~~a~Gs~~sh~m~iv~~~~~l~~-------l~~p~vvQefI~h~g~~~KV~VIG~~---v~~~~R~S~p~~~~~~~ 169 (274)
|+||..++| |.+|.++.+.++|.. .+.++++||||+ |+++.|.|+|+. +....+ .
T Consensus 175 vvKP~~g~~---s~Gv~~v~~~~el~~a~~~~~~~~~~~lvEe~I~--G~E~~v~vl~~~~~~~~~~~e----------~ 239 (364)
T 2i87_A 175 FVKPANLGS---SVGISKCNNEAELKEGIKEAFQFDRKLVIEQGVN--AREIEVAVLGNDYPEATWPGE----------V 239 (364)
T ss_dssp EEEESSCSS---CTTCEEESSHHHHHHHHHHHHTTCSEEEEEECCC--CEEEEEEEEESSSCEECCCEE----------E
T ss_pred EEEeCCCCC---CCCEEEECCHHHHHHHHHHHHhcCCeEEEEeCcc--CeEEEEEEEcCCCcEEeeeEE----------E
Confidence 999999653 568999999988864 257899999996 899999999885 221111 1
Q ss_pred ccCCceeeecCcccccccC--CcCCCCccccCCCChHHHHHHHHHHHHHhCCc-eeEEeEEEeCCCCCeEEEEeccCCCC
Q 024006 170 STSAGVFRFPRVSCAAASA--DDADLDPCVAELPPRPLLERLAKELRRQLGLR-LFNLDIIREHGTRDQFYVIDINYFPG 246 (274)
Q Consensus 170 ~~~~g~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~lA~~~~~~lGl~-l~G~Dvi~~~~~g~~~~ViDVN~fPg 246 (274)
....++|+|......|... .+..++++. .++++++|.++.++||+. ++++|++++. +| ++||+|||..||
T Consensus 240 ~~~~~~~~~~~k~~~g~~~~~~pa~l~~~~-----~~~i~~~a~~~~~alg~~G~~~vD~~~~~-~g-~~~viEiN~rpg 312 (364)
T 2i87_A 240 VKDVAFYDYKSKYKDGKVQLQIPADLDEDV-----QLTLRNMALEAFKATDCSGLVRADFFVTE-DN-QIYINETNAMPG 312 (364)
T ss_dssp CCSCCC-----------CCEESSCSSCHHH-----HHHHHHHHHHHHHHTTCCEEEEEEEEECT-TC-CEEEEEEESSCC
T ss_pred ecCCCcCCHHHcccCCCeeEEeCCCCCHHH-----HHHHHHHHHHHHHHcCCCcEEEEEEEEec-CC-CEEEEEEeCCCC
Confidence 1122345554433222111 111222211 357899999999999995 8899999975 45 689999999999
Q ss_pred CCCcc
Q 024006 247 YGKMP 251 (274)
Q Consensus 247 ~~g~~ 251 (274)
++...
T Consensus 313 ~t~~s 317 (364)
T 2i87_A 313 FTAFS 317 (364)
T ss_dssp CSTTS
T ss_pred CCchh
Confidence 98653
No 18
>2pvp_A D-alanine-D-alanine ligase; 2.40A {Helicobacter pylori}
Probab=99.85 E-value=7.2e-20 Score=171.63 Aligned_cols=205 Identities=16% Similarity=0.155 Sum_probs=143.1
Q ss_pred HHHHHHhCCCcEEe-CcHHHHHHhcCHHHHHHHHHhccccCCCCCccCCCEEEEecCCC-ChhHHHHhcCCCCcEEEeeC
Q 024006 27 LEEYRQTHPEVTVL-DPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDAS-SIPDVVLKAGLTLPLVAKPL 104 (274)
Q Consensus 27 l~~y~~~~P~v~Vi-dp~~ai~~l~dR~~~~~~L~~~~~~~~~~~I~~P~~~~~~~~~~-~~~~~l~~~~l~~P~VvKp~ 104 (274)
++...+. -+++++ .+.+++..++||..+.+.|++. ||++|++..+.+.+. +..+ ...++||+|+||.
T Consensus 125 i~~~le~-~gip~~G~~~~a~~~~~DK~~~k~~l~~~-------Gip~p~~~~~~~~~~~~~~~---~~~lg~PvvVKP~ 193 (367)
T 2pvp_A 125 LASLLEF-YRIAFIGPRIEASVLSYNKYLTKLYAKDL-------GIKTLDYVLLNEKNRANALD---LMNFNFPFIVKPS 193 (367)
T ss_dssp HHHHHHH-TTCCEESCCHHHHHHHHSHHHHHHHHHHH-------TCBCCCCEEECTTTGGGHHH---HCCSCSCEEEEES
T ss_pred HHHHHHH-cCCCccCCCHHHHHHHcCHHHHHHHHHHC-------CcCCCCEEEEeCCchHHHHH---HhccCCCEEEEEC
Confidence 4555554 367776 7799999999999999999986 899999999864321 2222 3568999999999
Q ss_pred cCCCCccceeeEEEeChhhHhc-------cCCCeEEEecccCCC-eE---EEEEEECCEEEEE-EEecCCCCcccccccC
Q 024006 105 VADGSAKSHELSLAYDQYSLKK-------LEPPLVLQEFVNHGG-VL---FKVYIVGEAIKVV-RRFSLPDVTKQDLSTS 172 (274)
Q Consensus 105 ~a~Gs~~sh~m~iv~~~~~l~~-------l~~p~vvQefI~h~g-~~---~KV~VIG~~v~~~-~R~S~p~~~~~~~~~~ 172 (274)
.++| |.++.++.++++|.. .+.++++||||+ | ++ +.|.| ++++.+. .+.. + .
T Consensus 194 ~g~s---s~Gv~~v~~~~el~~a~~~~~~~~~~vlVEe~I~--G~~E~svi~v~v-~g~~~~~~~ei~-~---------~ 257 (367)
T 2pvp_A 194 NAGS---SLGVNVVKEEKELIYALDSAFEYSKEVLIEPFIQ--GVKEYNLAGCKI-KKDFCFSYIEEP-N---------K 257 (367)
T ss_dssp SCCT---TTTCEEESSTTSHHHHHHHHTTTCSCEEEEECCT--TCEEEEEEEEEE-TTEEEEEEEEET-T---------T
T ss_pred CCCC---CCCEEEECCHHHHHHHHHHHHhcCCcEEEEeCCC--CCceeeEEEEEE-CCEEEEEEEEEe-c---------C
Confidence 9643 568999999988764 267899999995 7 89 77888 8875432 2322 1 1
Q ss_pred CceeeecCcccccccC--CcCCCCccccCCCChHHHHHHHHHHHHHhCCc-eeEEeEEEeCCCCCeEEEEeccCCCCCCC
Q 024006 173 AGVFRFPRVSCAAASA--DDADLDPCVAELPPRPLLERLAKELRRQLGLR-LFNLDIIREHGTRDQFYVIDINYFPGYGK 249 (274)
Q Consensus 173 ~g~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~lA~~~~~~lGl~-l~G~Dvi~~~~~g~~~~ViDVN~fPg~~g 249 (274)
.++|+|......+... .+..++++. .++++++|.++.++||+. ++++|++++ +| ++|++|||..||+++
T Consensus 258 ~~~~d~~~ky~~g~~~~~~Pa~l~~~~-----~~~i~~~a~~~~~aLg~~G~~~vDf~~~--~g-~~~vlEiN~rpg~t~ 329 (367)
T 2pvp_A 258 QEFLDFKQKYLDFSRNKAPKASLSNAL-----EEQLKENFKKLYSDLFDGAIIRCDFFVI--EN-EVYLNEINPIPGSLA 329 (367)
T ss_dssp TEEECCCCSSCCSCCCSCCCCCCCHHH-----HHHHHHHHHHHHTTTSTTCCEEEEEEEE--TT-EEEEEEEESSCGGGG
T ss_pred CceEcccccccCCCeeEEecCCCCHHH-----HHHHHHHHHHHHHHcCCCCEEEEEEEEE--CC-eEEEEEEeCCCCCCc
Confidence 3456665544322111 112222211 357899999999999997 888999998 34 699999999999876
Q ss_pred cccchHHHHHHHHHHHHh
Q 024006 250 MPEYEHIFTDFLLSLTQS 267 (274)
Q Consensus 250 ~~~~~~~l~~~l~~~~~~ 267 (274)
..-++ -+.+.+.+++..
T Consensus 330 ~s~~p-~~~~l~~~li~~ 346 (367)
T 2pvp_A 330 NYLFD-DFKTTLENLAQS 346 (367)
T ss_dssp GGGSS-SHHHHHHHHHHH
T ss_pred ccccC-CHHHHHHHHHhC
Confidence 54433 344444444443
No 19
>1e4e_A Vancomycin/teicoplanin A-type resistance protein; ligase, cell WALL, antibiotic resistance, membrane, peptidog synthesis; HET: ADP PHY; 2.5A {Enterococcus faecium} SCOP: c.30.1.2 d.142.1.1 PDB: 1e4e_B*
Probab=99.85 E-value=3.4e-20 Score=171.31 Aligned_cols=189 Identities=16% Similarity=0.273 Sum_probs=133.5
Q ss_pred HHHHHHhCCCcEEe-CcHHHHHHhcCHHHHHHHHHhccccCCCCCccCCCEEEEecCCCChhHHHHhcCCCCcEEEeeCc
Q 024006 27 LEEYRQTHPEVTVL-DPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLV 105 (274)
Q Consensus 27 l~~y~~~~P~v~Vi-dp~~ai~~l~dR~~~~~~L~~~~~~~~~~~I~~P~~~~~~~~~~~~~~~l~~~~l~~P~VvKp~~ 105 (274)
++...+. -+++++ .+++++..++||..+.+.|++. ||++|++..+.+.++ ... ..++||+|+||..
T Consensus 108 ~~~~le~-~gip~~g~~~~~~~~~~dK~~~k~~l~~~-------Gip~p~~~~~~~~~~-~~~----~~~~~PvvvKP~~ 174 (343)
T 1e4e_A 108 IQGLFEL-SGIPFVGCDIQSSAICMDKSLTYIVAKNA-------GIATPAFWVINKDDR-PVA----ATFTYPVFVKPAR 174 (343)
T ss_dssp HHHHHHH-HTCCBSSCCHHHHHHHHSHHHHHHHHHHT-------TCBCCCEEEECTTCC-CCG----GGSCSCEEEEESS
T ss_pred HHHHHHH-cCCCccCCCHHHHHHHhCHHHHHHHHHHC-------CCCcCCEEEEechhh-hhh----hccCCCEEEEeCC
Confidence 4444443 257776 6799999999999999999986 899999999864322 211 4578999999999
Q ss_pred CCCCccceeeEEEeChhhHhc-------cCCCeEEEecccCCCeEEEEEEECCE----EEEEEEecCCCCcccccccCCc
Q 024006 106 ADGSAKSHELSLAYDQYSLKK-------LEPPLVLQEFVNHGGVLFKVYIVGEA----IKVVRRFSLPDVTKQDLSTSAG 174 (274)
Q Consensus 106 a~Gs~~sh~m~iv~~~~~l~~-------l~~p~vvQefI~h~g~~~KV~VIG~~----v~~~~R~S~p~~~~~~~~~~~g 174 (274)
++| |.+|.++.++++|.. .+.++++||||+ |+++.|.|+|+. +....+.. ...+
T Consensus 175 ~~~---s~Gv~~v~~~~el~~a~~~~~~~~~~~lvEe~I~--G~E~~v~vl~~~~~~~~~~~~ei~----------~~~~ 239 (343)
T 1e4e_A 175 SGS---SFGVKKVNSADELDYAIESARQYDSKILIEQAVS--GCEVGCAVLGNSAALVVGEVDQIR----------LQYG 239 (343)
T ss_dssp CCT---TTTCEEECSGGGHHHHHHHHTTTCSSEEEEECCC--SEEEEEEEEEETTCCEECCCEEEE----------ESSS
T ss_pred CCC---CCCEEEeCCHHHHHHHHHHHHhcCCcEEEEeCcC--CeEEEEEEEeCCCCeEEeeeEEEe----------eCCC
Confidence 653 568999999988764 257899999995 899999999765 22112211 1122
Q ss_pred eeeecCccc----ccccC--CcCCCCccccCCCChHHHHHHHHHHHHHhCCc-eeEEeEEEeCCCCCeEEEEeccCCCCC
Q 024006 175 VFRFPRVSC----AAASA--DDADLDPCVAELPPRPLLERLAKELRRQLGLR-LFNLDIIREHGTRDQFYVIDINYFPGY 247 (274)
Q Consensus 175 ~~~~~~~~~----~~~~~--~~~~~~~~~~~~~~~~~~~~lA~~~~~~lGl~-l~G~Dvi~~~~~g~~~~ViDVN~fPg~ 247 (274)
+|+|..... .|... .+..++++. .++++++|.++.++||+. ++++|++++. +| ++|++|||..||+
T Consensus 240 ~~~~~~k~~~~~~~g~~~~~~p~~l~~~~-----~~~i~~~a~~~~~alg~~G~~~vD~~~~~-~g-~~~viEiN~rpg~ 312 (343)
T 1e4e_A 240 IFRIHQEVEPEKGSENAVITVPADLSAEE-----RGRIQETVKKIYKTLGCRGLARVDMFLQD-NG-RIVLNEVNTLPGF 312 (343)
T ss_dssp CCCGGGSSSGGGCCSSEEECSSCSSCHHH-----HHHHHHHHHHHHHHTTCEEEEEEEEEECT-TC-CEEEEEEESSCCC
T ss_pred ccCHhhcccccCCCCCeeEEeCCCCCHHH-----HHHHHHHHHHHHHHcCCceEEEEEEEEeC-CC-CEEEEEeeCCCCC
Confidence 444443322 11110 111122111 357899999999999996 8899999975 45 6899999999999
Q ss_pred CCc
Q 024006 248 GKM 250 (274)
Q Consensus 248 ~g~ 250 (274)
+..
T Consensus 313 t~~ 315 (343)
T 1e4e_A 313 TSY 315 (343)
T ss_dssp STT
T ss_pred Ccc
Confidence 864
No 20
>3i12_A D-alanine-D-alanine ligase A; D-alanyl-alanine synthetase A, ADP binding protein, csgid, A binding, cell shape; HET: ADP; 2.20A {Salmonella typhimurium} PDB: 3q1k_A*
Probab=99.85 E-value=2.3e-20 Score=174.36 Aligned_cols=207 Identities=14% Similarity=0.244 Sum_probs=143.4
Q ss_pred heeeeeccCcHHHHHHHHHHHHhCCCcEEeCc-HHHHHHhcCHHHHHHHHHhccccCCCCCccCCCEEEEecCC---CCh
Q 024006 11 SFSFLMQLTGKEWRQILEEYRQTHPEVTVLDP-PYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDA---SSI 86 (274)
Q Consensus 11 ~~~ilHK~~~~~~~~~l~~y~~~~P~v~Vidp-~~ai~~l~dR~~~~~~L~~~~~~~~~~~I~~P~~~~~~~~~---~~~ 86 (274)
-|.+||-..+..- .+|.+.+. -+++++.| ..++..++||..+.+.|++. ||++|++..+.+.. .+.
T Consensus 102 vf~~lhG~~gEdg--~iq~~le~-~gip~~G~~~~a~~~~~DK~~~k~~l~~~-------Gip~p~~~~~~~~~~~~~~~ 171 (364)
T 3i12_A 102 IFPIVHGTLGEDG--SLQGMLRV-ANLPFVGSDVLSSAACMDKDVAKRLLRDA-------GLNIAPFITLTRTNRHAFSF 171 (364)
T ss_dssp EEECCCSTTTTSS--HHHHHHHH-TTCCBSSCCHHHHHHHHCHHHHHHHHHHT-------TCCBCCEEEEETTTGGGCCH
T ss_pred EEEeCCCCCCcCH--HHHHHHHH-cCCCccCCCHHHHHHHHCHHHHHHHHHHC-------CCCCCCEEEEEccccchhhH
Confidence 4555565554321 45566665 35777754 79999999999999999986 89999999996432 133
Q ss_pred hHHHHhcCCCCcEEEeeCcCCCCccceeeEEEeChhhHhc-------cCCCeEEEecccCCCeEEEEEEECCEE---EEE
Q 024006 87 PDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKK-------LEPPLVLQEFVNHGGVLFKVYIVGEAI---KVV 156 (274)
Q Consensus 87 ~~~l~~~~l~~P~VvKp~~a~Gs~~sh~m~iv~~~~~l~~-------l~~p~vvQefI~h~g~~~KV~VIG~~v---~~~ 156 (274)
.+.. ..++||+|+||..++| |.++.++.++++|.. .+.++++||||+ |+++.|.|+|+.. ...
T Consensus 172 ~~~~--~~lg~PvvVKP~~ggs---s~Gv~~v~~~~el~~a~~~a~~~~~~vlVEe~I~--G~E~~v~vl~~~~~~~~~~ 244 (364)
T 3i12_A 172 AEVE--SRLGLPLFVKPANQGS---SVGVSKVANEAQYQQAVALAFEFDHKVVVEQGIK--GREIECAVLGNDNPQASTC 244 (364)
T ss_dssp HHHH--HHHCSSEEEEETTCCT---TTTCEEESSHHHHHHHHHHHHHHCSEEEEEECCC--SEEEEEEEEESSSCEEEEE
T ss_pred HHHH--HhcCCCEEEEECCCCC---CcCeEEeCCHHHHHHHHHHHHhcCCcEEEEcCcC--CeEEEEEEEeCCCceEeee
Confidence 3322 3478999999998643 578999999988864 267899999995 7999999998862 222
Q ss_pred EEecCCCCcccccccCCceeeecCcccccc-c--CCcCCCCccccCCCChHHHHHHHHHHHHHhCCc-eeEEeEEEeCCC
Q 024006 157 RRFSLPDVTKQDLSTSAGVFRFPRVSCAAA-S--ADDADLDPCVAELPPRPLLERLAKELRRQLGLR-LFNLDIIREHGT 232 (274)
Q Consensus 157 ~R~S~p~~~~~~~~~~~g~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~lA~~~~~~lGl~-l~G~Dvi~~~~~ 232 (274)
.+. ....++|+|......+. . ..+..++++. .++++++|.++.++||+. ++++|++++. +
T Consensus 245 ~ei----------~~~~~~~~~~~ky~~~~~~~~~~Pa~l~~~~-----~~~i~~~a~~~~~alg~~G~~~vD~~~~~-~ 308 (364)
T 3i12_A 245 GEI----------VLNSEFYAYDTKYIDDNGAQVVVPAQIPSEV-----NDKIRAIAIQAYQTLGCAGMARVDVFLTA-D 308 (364)
T ss_dssp EEE----------ECCTTCC--TTTTSGGGGCEEESSCSSCHHH-----HHHHHHHHHHHHHHTTCCEEEEEEEEECT-T
T ss_pred EEE----------ecCCCccCHHHcccCCCceEEEeCCCCCHHH-----HHHHHHHHHHHHHHhCCceEEEEEEEEec-C
Confidence 111 11234556555432221 1 1112232222 457899999999999996 7789999985 3
Q ss_pred CCeEEEEeccCCCCCCCcc
Q 024006 233 RDQFYVIDINYFPGYGKMP 251 (274)
Q Consensus 233 g~~~~ViDVN~fPg~~g~~ 251 (274)
| ++|++|||..||++...
T Consensus 309 g-~~~vlEiN~~Pg~t~~s 326 (364)
T 3i12_A 309 N-EVVINEINTLPGFTNIS 326 (364)
T ss_dssp C-CEEEEEEESSCCCSTTC
T ss_pred C-CEEEEEeeCCCCCCCCC
Confidence 5 68999999999998764
No 21
>3lwb_A D-alanine--D-alanine ligase; DDL, D-alanyl--D-alanine ligase RV2981C, structural genomics, TB structural GENO consortium, TBSGC; 2.10A {Mycobacterium tuberculosis}
Probab=99.84 E-value=1.4e-20 Score=176.74 Aligned_cols=212 Identities=17% Similarity=0.191 Sum_probs=143.9
Q ss_pred hheeeeeccCcHHHHHHHHHHHHhCCCcEEeCc-HHHHHHhcCHHHHHHHHHhccccCCCCCccCCCEEEEecCCCC-hh
Q 024006 10 VSFSFLMQLTGKEWRQILEEYRQTHPEVTVLDP-PYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASS-IP 87 (274)
Q Consensus 10 ~~~~ilHK~~~~~~~~~l~~y~~~~P~v~Vidp-~~ai~~l~dR~~~~~~L~~~~~~~~~~~I~~P~~~~~~~~~~~-~~ 87 (274)
+-|-++|=..+.. ..+|.+.+. -+++++.| +.+...++||..|.+.|++. ||++|++..+.+.... ..
T Consensus 112 ~vfp~lhG~~gEd--g~iq~lle~-~gip~vG~~~~a~~~~~DK~~~k~~l~~~-------GIp~p~~~~~~~~~~~~~~ 181 (373)
T 3lwb_A 112 VVFPVLHGPYGED--GTIQGLLEL-AGVPYVGAGVLASAVGMDKEFTKKLLAAD-------GLPVGAYAVLRPPRSTLHR 181 (373)
T ss_dssp EEEECCEETTEEC--CHHHHHHHH-HTCCBSSSCHHHHHHHHBHHHHHHHHHHT-------TCCBCCEEEECTTCCCCCH
T ss_pred EEEECCCCCCCcc--HHHHHHHHH-cCCCccCCcHHHHHHHcCHHHHHHHHHHc-------CcCCCCEEEEECcccchhH
Confidence 3455566555432 134455554 25777776 89999999999999999986 8999999999644321 12
Q ss_pred HHHHhcCCCCcEEEeeCcCCCCccceeeEEEeChhhHhc-------cCCCeEEEecccCCCeEEEEEEECCEEEEEEEec
Q 024006 88 DVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKK-------LEPPLVLQEFVNHGGVLFKVYIVGEAIKVVRRFS 160 (274)
Q Consensus 88 ~~l~~~~l~~P~VvKp~~a~Gs~~sh~m~iv~~~~~l~~-------l~~p~vvQefI~h~g~~~KV~VIG~~v~~~~R~S 160 (274)
.. ...++||+|+||..++| |.++.++.++++|.. .+.++++||||+ |+++.|.|+|+.-.. .+.+
T Consensus 182 ~~--~~~lg~PvvVKP~~ggs---s~GV~~v~~~~eL~~a~~~a~~~~~~vlVEe~I~--G~E~~v~vl~~~~~~-~~~~ 253 (373)
T 3lwb_A 182 QE--CERLGLPVFVKPARGGS---SIGVSRVSSWDQLPAAVARARRHDPKVIVEAAIS--GRELECGVLEMPDGT-LEAS 253 (373)
T ss_dssp HH--HHHHCSCEEEEESBCST---TTTCEEECSGGGHHHHHHHHHTTCSSEEEEECCE--EEEEEEEEEECTTSC-EEEC
T ss_pred HH--HHhcCCCEEEEeCCCCC---CCCEEEeCCHHHHHHHHHHHHhcCCCEEEeCCCC--CeEEEEEEEECCCCc-eEEe
Confidence 22 34578999999999643 678999999998864 267899999996 899999999875210 0011
Q ss_pred CCCCcccccccC--Cc----eeeecCcccccccC--CcCCCCccccCCCChHHHHHHHHHHHHHhCCc-eeEEeEEEeCC
Q 024006 161 LPDVTKQDLSTS--AG----VFRFPRVSCAAASA--DDADLDPCVAELPPRPLLERLAKELRRQLGLR-LFNLDIIREHG 231 (274)
Q Consensus 161 ~p~~~~~~~~~~--~g----~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~lA~~~~~~lGl~-l~G~Dvi~~~~ 231 (274)
+. .++... .+ +|+|......+... .+..++++. .++++++|.++.++||+. ++++|++++.
T Consensus 254 -~~---~ei~~~~~~~~~~~~~d~~~ky~~~~~~~~~Pa~l~~~~-----~~~i~~~a~~~~~aLg~~G~~~vDf~~~~- 323 (373)
T 3lwb_A 254 -TL---GEIRVAGVRGREDSFYDFATKYLDDAAELDVPAKVDDQV-----AEAIRQLAIRAFAAIDCRGLARVDFFLTD- 323 (373)
T ss_dssp -CC---EEEECCSTTCSEESSSCHHHHHTCTTCEEESSCCCCHHH-----HHHHHHHHHHHHHHTTCCSEEEEEEEEET-
T ss_pred -ee---eEEEccCCCCccccccchhhcccCCCceEEeCCCCCHHH-----HHHHHHHHHHHHHHhCCccEEEEEEEEEC-
Confidence 10 111111 22 55555443222110 122233222 457899999999999996 8889999986
Q ss_pred CCCeEEEEeccCCCCCCCcc
Q 024006 232 TRDQFYVIDINYFPGYGKMP 251 (274)
Q Consensus 232 ~g~~~~ViDVN~fPg~~g~~ 251 (274)
+| + |++|||..||++...
T Consensus 324 dg-~-~vlEIN~~PG~t~~S 341 (373)
T 3lwb_A 324 DG-P-VINEINTMPGFTTIS 341 (373)
T ss_dssp TE-E-EEEEEESSCCCSTTS
T ss_pred CC-C-EEEEecCCCCCCccc
Confidence 45 6 999999999988754
No 22
>3e5n_A D-alanine-D-alanine ligase A; bacterial blight; 2.00A {Xanthomonas oryzae PV} PDB: 3r5f_A* 3rfc_A*
Probab=99.84 E-value=1.9e-20 Score=176.67 Aligned_cols=197 Identities=14% Similarity=0.264 Sum_probs=132.1
Q ss_pred HHHHHHHhCCCcEEe-CcHHHHHHhcCHHHHHHHHHhccccCCCCCccCCCEEEEecCC---CChhHHHHhcCCCCcEEE
Q 024006 26 ILEEYRQTHPEVTVL-DPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDA---SSIPDVVLKAGLTLPLVA 101 (274)
Q Consensus 26 ~l~~y~~~~P~v~Vi-dp~~ai~~l~dR~~~~~~L~~~~~~~~~~~I~~P~~~~~~~~~---~~~~~~l~~~~l~~P~Vv 101 (274)
.+|...+. -+++++ .++.+...++||..+.+.|++. ||++|++..+.+.. .+..+.. ..++||+|+
T Consensus 134 ~iq~lle~-~gipy~G~~~~a~~~~~DK~~~k~~l~~~-------GIp~p~~~~~~~~~~~~~~~~~~~--~~lg~PvvV 203 (386)
T 3e5n_A 134 SLQGLLRM-ANLPFVGSGVLGSAVAMDKDMAKRVLRDA-------RLAVAPFVCFDRHTAAHADVDTLI--AQLGLPLFV 203 (386)
T ss_dssp HHHHHHHH-TTCCBSSCCHHHHHHHHBHHHHHHHHHHT-------TCCBCCEEEEEHHHHTTCCHHHHH--HHHCSSEEE
T ss_pred HHHHHHHH-cCCCccCCCHHHHHHHhCHHHHHHHHHHC-------CCCCCCEEEEeCcccchhhHHHHH--HhcCCCEEE
Confidence 45666665 356665 6789999999999999999986 89999999985322 1333322 347899999
Q ss_pred eeCcCCCCccceeeEEEeChhhHhc-------cCCCeEEEecccCCCeEEEEEEECCEEEEEEEecCCCCcccccccCCc
Q 024006 102 KPLVADGSAKSHELSLAYDQYSLKK-------LEPPLVLQEFVNHGGVLFKVYIVGEAIKVVRRFSLPDVTKQDLSTSAG 174 (274)
Q Consensus 102 Kp~~a~Gs~~sh~m~iv~~~~~l~~-------l~~p~vvQefI~h~g~~~KV~VIG~~v~~~~R~S~p~~~~~~~~~~~g 174 (274)
||..++| |.++.++.++++|.+ .+.++++||||+ |+++.|.|+|+....+. ..+++....+
T Consensus 204 KP~~ggs---s~Gv~~v~~~~el~~a~~~a~~~~~~vlVEe~I~--G~E~~v~vl~~~~~~~~-------~~gei~~~~~ 271 (386)
T 3e5n_A 204 KPANQGS---SVGVSQVRTADAFAAALALALAYDHKVLVEAAVA--GREIECAVLGNAVPHAS-------VCGEVVVHDA 271 (386)
T ss_dssp EESBSCS---STTCEEECSGGGHHHHHHHHTTTCSEEEEEECCC--SEEEEEEEECSSSCEEE-------EEEEECC---
T ss_pred EECCCCc---CCCEEEECCHHHHHHHHHHHHhCCCcEEEEcCCC--CeEEEEEEEeCCCceEE-------EeEEEEeCCc
Confidence 9999653 578999999998864 256899999995 89999999988631110 0001111233
Q ss_pred eeeecCcccccc-c--CCcCCCCccccCCCChHHHHHHHHHHHHHhCCc-eeEEeEEEeCCCCCeEEEEeccCCCCCCCc
Q 024006 175 VFRFPRVSCAAA-S--ADDADLDPCVAELPPRPLLERLAKELRRQLGLR-LFNLDIIREHGTRDQFYVIDINYFPGYGKM 250 (274)
Q Consensus 175 ~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~lA~~~~~~lGl~-l~G~Dvi~~~~~g~~~~ViDVN~fPg~~g~ 250 (274)
+|+|......+. . ..+..++++. .++++++|.++.++||+. ++++|++++. +| ++|++|||..||++..
T Consensus 272 ~~d~~~ky~~~~~~~~~~Pa~l~~~~-----~~~i~~~a~~~~~aLg~~G~~~vDf~~~~-dg-~~~vlEiN~~PG~t~~ 344 (386)
T 3e5n_A 272 FYSYATKYISEHGAEIVIPADIDAQT-----QQRIQQIAVQAYQALGCAGMARVDVFLCA-DG-RIVINEVNTLPGFTRI 344 (386)
T ss_dssp --------------CEESSCSSCHHH-----HHHHHHHHHHHHHHHTCCSEEEEEEEECT-TC-CEEEEEEESSCCCSTT
T ss_pred ccchhcccCCCCCeEEEECCCCCHHH-----HHHHHHHHHHHHHHhCCccEEEEEEEEEC-CC-cEEEEEeECCCCCCcc
Confidence 556555432211 0 0112222222 357899999999999998 7789999985 35 6999999999999876
Q ss_pred c
Q 024006 251 P 251 (274)
Q Consensus 251 ~ 251 (274)
.
T Consensus 345 S 345 (386)
T 3e5n_A 345 S 345 (386)
T ss_dssp C
T ss_pred C
Confidence 3
No 23
>3ln6_A Glutathione biosynthesis bifunctional protein GSH; gamma-glutamyl cysteine ligase domain, ATP-grAsp domain, HYB enzyme; 2.95A {Streptococcus agalactiae serogroup V}
Probab=99.83 E-value=1.2e-19 Score=184.17 Aligned_cols=198 Identities=15% Similarity=0.193 Sum_probs=134.5
Q ss_pred CcHHHHHHhcCHHHHHHHHHhccccCCCCCccCCCEEEEecCCCChhHHHHhcCCCCcEEEeeCcCCCCccceeeEEEe-
Q 024006 41 DPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAY- 119 (274)
Q Consensus 41 dp~~ai~~l~dR~~~~~~L~~~~~~~~~~~I~~P~~~~~~~~~~~~~~~l~~~~l~~P~VvKp~~a~Gs~~sh~m~iv~- 119 (274)
++..++..+.||..+.+.|++. |||+|++.++.+ .++..+.+. ..++||+|+||..|+ .|.||.++.
T Consensus 474 ~~~~a~~~~~DK~~tk~lL~~~-------GIPvP~~~~~~~-~~ea~~~~~-~~~g~PvVVKP~~G~---~G~GV~iv~~ 541 (750)
T 3ln6_A 474 DNYIVPLAMANKVVTKKILDEK-------HFPTPFGDEFTD-RKEALNYFS-QIQDKPIVVKPKSTN---FGLGISIFKT 541 (750)
T ss_dssp SCTHHHHHTTTSHHHHHHHHHT-------TCCCCCCCCEET-TTTHHHHHH-HSSSSCEEEEETTCC---SSSSCEEESS
T ss_pred CHHHHHHHHhCHHHHHHHHHHC-------CcCCCCEEEECC-HHHHHHHHH-HhcCCcEEEEeCCCC---CCCCEEEEeC
Confidence 4555677778999999999996 899999998863 334433332 357899999998854 366999998
Q ss_pred --ChhhHhc-------cCCCeEEEecccCCCeEEEEEEECCEEEEEEEecCCCCcccc---------------ccc----
Q 024006 120 --DQYSLKK-------LEPPLVLQEFVNHGGVLFKVYIVGEAIKVVRRFSLPDVTKQD---------------LST---- 171 (274)
Q Consensus 120 --~~~~l~~-------l~~p~vvQefI~h~g~~~KV~VIG~~v~~~~R~S~p~~~~~~---------------~~~---- 171 (274)
+.+++.+ .+.++++||||+ |++++|+|+|++++++.++..+.+..+. ++.
T Consensus 542 ~~s~eel~~a~~~~~~~~~~vlVEefI~--G~E~~v~Vvgg~vvaa~~r~p~~v~GdG~~tI~eLI~~~n~dp~rg~~~~ 619 (750)
T 3ln6_A 542 SANLASYEKAIDIAFTEDSAILVEEYIE--GTEYRFFVLEGDCIAVLLRVAANVVGDGIHTISQLVKLKNQNPLRGYDHR 619 (750)
T ss_dssp CCCHHHHHHHHHHHHHHCSEEEEEECCC--SEEEEEEEETTEEEEEEEEECCEEECCTTCCHHHHHHHHTTCTTEESSSC
T ss_pred CCCHHHHHHHHHHHHhhCCcEEEEeccC--CCEEEEEEECCEEEEEEEEecceEecCCccCHHHHHHhhccCcccccccc
Confidence 7777653 267899999996 8999999999999988666444432110 000
Q ss_pred ---------------------------CCcee----eecCcccccccCCcCCCCccccCCCChHHHHHHHHHHHHHhCCc
Q 024006 172 ---------------------------SAGVF----RFPRVSCAAASADDADLDPCVAELPPRPLLERLAKELRRQLGLR 220 (274)
Q Consensus 172 ---------------------------~~g~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lA~~~~~~lGl~ 220 (274)
..|.. .-.|.+.+|. +.+ ... + ..++++++|.++++++|+.
T Consensus 620 ~~l~~i~~d~~~~~~l~~~g~~~~~V~~~Ge~v~L~~~~Nls~Gg~-~~d--~td---~--i~p~~~~~a~~aa~~igl~ 691 (750)
T 3ln6_A 620 SPLEVIELGEVEQLMLEQQGYTVNSIPPEGTKIELRRNSNISTGGD-SID--VTN---T--MDPTYKQLAAEMAEAMGAW 691 (750)
T ss_dssp CSEECCCCCHHHHHHHHHTTCCSSCCCCTTCEEESCSSCCTTTTCE-EEE--CTT---T--SCHHHHHHHHHHHHHHTCS
T ss_pred CccccccccHHHHHHHHHcCCCccccCCCCCEEEEeecccccCCCc-eee--ccc---c--CCHHHHHHHHHHHHHhCCC
Confidence 00000 0011222111 111 000 1 2467899999999999999
Q ss_pred eeEEeEEEeC-------CCCCeEEEEeccCCCCCCCc--------ccchHHHHHHH
Q 024006 221 LFNLDIIREH-------GTRDQFYVIDINYFPGYGKM--------PEYEHIFTDFL 261 (274)
Q Consensus 221 l~G~Dvi~~~-------~~g~~~~ViDVN~fPg~~g~--------~~~~~~l~~~l 261 (274)
++|||++.++ ..+ .++|||||.-||+.+. .+....+++++
T Consensus 692 ~~GvDli~~di~~~~~~~~~-~~~iiEvN~~pg~~~h~~p~~g~~~~v~~~ii~~l 746 (750)
T 3ln6_A 692 VCGVDLIIPNATQAYSKDKK-NATCIELNFNPLMYMHTYCQEGPGQSITPRILAKL 746 (750)
T ss_dssp SCEEEEEESCSSSCCCTTTT-CCEEEEEESSCCCHHHHSCSBSCCCCCHHHHHHHH
T ss_pred eEEEEEEecCccccccccCC-CeEEEEEcCCcchhhhcCcccCCCCcHHHHHHHHh
Confidence 9999999974 123 4799999999998766 24445555544
No 24
>3ln7_A Glutathione biosynthesis bifunctional protein GSH; gamma-glutamylcysteine ligase domain, ATP-grAsp domain, HYBR enzyme, ATP-binding; 3.20A {Pasteurella multocida}
Probab=99.82 E-value=5.6e-19 Score=179.15 Aligned_cols=185 Identities=12% Similarity=0.185 Sum_probs=126.5
Q ss_pred HHHHHhcCHHHHHHHHHhccccCCCCCccCCCEEEEecCCCChhHHHHhcCCCCcEEEeeCcCCCCccceeeEEE----e
Q 024006 44 YAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLA----Y 119 (274)
Q Consensus 44 ~ai~~l~dR~~~~~~L~~~~~~~~~~~I~~P~~~~~~~~~~~~~~~l~~~~l~~P~VvKp~~a~Gs~~sh~m~iv----~ 119 (274)
.++..+.||..+.+.|++. |||+|++..+.+ .++..+.+ ...++||+|+||..|+ .|.||.++ .
T Consensus 482 ~aa~~~~DK~~tk~lL~~~-------GIPvP~~~~~~~-~~ea~~~~-~~~~g~PvVVKP~~g~---~G~GV~iv~~~v~ 549 (757)
T 3ln7_A 482 ISPLIMENKVVTKKVLQKA-------GFNVPQSVEFTS-LEKAVASY-ALFENRAVVIKPKSTN---YGLGITIFQQGVQ 549 (757)
T ss_dssp HHHHHHHHSHHHHHHHHHH-------TCCCCCEEEESC-HHHHHHGG-GGSSSSCEEEEESSCS---TTTTCEECSSCCC
T ss_pred HHHHHhcCHHHHHHHHHHC-------CcCCCCEEEECC-HHHHHHHH-HHhcCCCEEEEeCCCC---CCCCeEEecCCCC
Confidence 4567777999999999996 899999998852 22221211 1468999999999864 36789988 7
Q ss_pred ChhhHhc-------cCCCeEEEecccCCCeEEEEEEECCEEEEEEEecCCCCcccc---------------ccc------
Q 024006 120 DQYSLKK-------LEPPLVLQEFVNHGGVLFKVYIVGEAIKVVRRFSLPDVTKQD---------------LST------ 171 (274)
Q Consensus 120 ~~~~l~~-------l~~p~vvQefI~h~g~~~KV~VIG~~v~~~~R~S~p~~~~~~---------------~~~------ 171 (274)
+.+++.+ .+.++++|||| .|++++|+|+|++++++.++..+++..+. ++.
T Consensus 550 ~~eel~~al~~a~~~~~~vlVEefI--~G~Ei~v~Vlggkvvaai~R~p~~VvGDG~~ti~eLi~~~n~~p~rg~~~~~~ 627 (757)
T 3ln7_A 550 NREDFAKALEIAFREDKEVMVEDYL--VGTEYRFFVLGDETLAVLLRVPANVVGDSVHSVAELVAMKNDHPLRGDGSRTP 627 (757)
T ss_dssp CHHHHHHHHHHHHHHCSSEEEEECC--CSEEEEEEEETTEEEEEEEECCSEEEGGGCCCHHHHHHHHHTSTTEECSSSSS
T ss_pred CHHHHHHHHHHHHhcCCcEEEEEcC--CCcEEEEEEECCEEEEEEEEecccccCCCcccHHHHHHhhcccccccccccCc
Confidence 8887754 26789999999 48999999999999998666544332110 000
Q ss_pred -------------------------CCcee----eecCcccccccCCcCCCCccccCCCChHHHHHHHHHHHHHhCCcee
Q 024006 172 -------------------------SAGVF----RFPRVSCAAASADDADLDPCVAELPPRPLLERLAKELRRQLGLRLF 222 (274)
Q Consensus 172 -------------------------~~g~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lA~~~~~~lGl~l~ 222 (274)
..|.. .-.|.+.+|. +.+ ... ..++..+++|.++++++|+.++
T Consensus 628 l~~I~ld~~~~~~L~~~g~~~d~Vp~~Ge~v~L~~~~Nls~GG~-~~d--vtd-----~i~p~~~~~a~~aa~~lGl~~~ 699 (757)
T 3ln7_A 628 LKKIALGEIEQLQLKEQGLTIDSIPAKDQLVQLRANSNISTGGD-SID--MTD-----EMHESYKQLAVGITKAMGAAVC 699 (757)
T ss_dssp EECCCCCHHHHHHHHHHTCCSSSCCCSSCEEECCSSCCGGGTCC-EEE--CTT-----TSCHHHHHHHHHHHHHHTCSEE
T ss_pred cccccccHHHHHHHHHcCCCccccCCCCCEEEeecccccccCcc-cee--ccc-----cCCHHHHHHHHHHHHHhCCCEE
Confidence 01110 0112222221 111 100 1246789999999999999999
Q ss_pred EEeEEEeCC------CCCeEEEEeccCCCCCCCc
Q 024006 223 NLDIIREHG------TRDQFYVIDINYFPGYGKM 250 (274)
Q Consensus 223 G~Dvi~~~~------~g~~~~ViDVN~fPg~~g~ 250 (274)
|+|++.++- .++.+.|||||.-||+.+.
T Consensus 700 GvDli~~di~~p~~~~~~~~~iiEvN~~P~~~~h 733 (757)
T 3ln7_A 700 GVDLIIPDLKQPATPNLTSWGVIEANFNPMMMMH 733 (757)
T ss_dssp EEEEEESCSSSCCCSSTTTCEEEEEESSCCHHHH
T ss_pred EEEEEecCccccccccCCCeEEEEEcCCcchhhh
Confidence 999999741 1114789999999997665
No 25
>1gsa_A Glutathione synthetase; ligase; HET: ADP GSH; 2.00A {Escherichia coli} SCOP: c.30.1.3 d.142.1.1 PDB: 1gsh_A 2glt_A 1glv_A
Probab=99.71 E-value=4.4e-17 Score=146.52 Aligned_cols=192 Identities=13% Similarity=0.124 Sum_probs=127.0
Q ss_pred HHHHHHHhCCCcEEeCcHHHHHHhcCHHHHHHHHHhccccCCCCCccCCCEEEEecCCCChhHHHHhcCCCCcEEEeeCc
Q 024006 26 ILEEYRQTHPEVTVLDPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLV 105 (274)
Q Consensus 26 ~l~~y~~~~P~v~Vidp~~ai~~l~dR~~~~~~L~~~~~~~~~~~I~~P~~~~~~~~~~~~~~~l~~~~l~~P~VvKp~~ 105 (274)
.+.+..+. -+++++||++++..+.||+.+.+.|+ ++|++..++ +.+++.+.+.. ++ |+|+||..
T Consensus 100 ~~~~~l~~-~g~~~~~~~~~~~~~~dK~~~~~~l~-----------~~P~t~~~~-~~~~~~~~~~~--~~-p~vvKP~~ 163 (316)
T 1gsa_A 100 YILERAEE-KGTLIVNKPQSLRDCNEKLFTAWFSD-----------LTPETLVTR-NKAQLKAFWEK--HS-DIILKPLD 163 (316)
T ss_dssp HHHHHHHH-TTCEEESCHHHHHHCCTTGGGGGGTT-----------TSCCEEEES-CHHHHHHHHHH--HS-SEEEECSS
T ss_pred HHHHHHHH-cCCeEecCHHHHHhhhhHHHHHhhhh-----------cCCCeEEeC-CHHHHHHHHHH--cC-CEEEEECC
Confidence 34444444 36789999999999999998777643 799998885 32233333333 34 99999999
Q ss_pred CCCCccceeeEEEe-ChhhHhc-------c-CCCeEEEecccCC-CeEEEEEEECCEEEE-E-EEecCCCCcccccccCC
Q 024006 106 ADGSAKSHELSLAY-DQYSLKK-------L-EPPLVLQEFVNHG-GVLFKVYIVGEAIKV-V-RRFSLPDVTKQDLSTSA 173 (274)
Q Consensus 106 a~Gs~~sh~m~iv~-~~~~l~~-------l-~~p~vvQefI~h~-g~~~KV~VIG~~v~~-~-~R~S~p~~~~~~~~~~~ 173 (274)
|+ +|.++.++. +.+++.. . ..++++||||+.. +.+++++++|+++.+ + .|.+.. +++..+
T Consensus 164 g~---~g~Gv~~v~~~~~~l~~~~~~~~~~~~~~~lvqe~i~~~~~~~~~v~~~~g~~~~~~~~r~~~~----~~~~~~- 235 (316)
T 1gsa_A 164 GM---GGASIFRVKEGDPNLGVIAETLTEHGTRYCMAQNYLPAIKDGDKRVLVVDGEPVPYCLARIPQG----GETRGN- 235 (316)
T ss_dssp CC---TTTTCEEECTTCTTHHHHHHHHTTTTTSCEEEEECCGGGGGCEEEEEEETTEECSEEEEEECCS----SCSCCC-
T ss_pred CC---CcccEEEecCChHHHHHHHHHHHhcCCceEEEecccCCCCCCCEEEEEECCEEeeeEEEEeCCC----CCceeE-
Confidence 64 467899998 7766543 2 3689999999863 799999999999875 4 444321 122211
Q ss_pred ceeeecCcccccccCCcCCCCccccCCCChHHHHHHHHHHHHH---hCCceeEEeEEEeCCCCCeEEEEeccC-C-CCCC
Q 024006 174 GVFRFPRVSCAAASADDADLDPCVAELPPRPLLERLAKELRRQ---LGLRLFNLDIIREHGTRDQFYVIDINY-F-PGYG 248 (274)
Q Consensus 174 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lA~~~~~~---lGl~l~G~Dvi~~~~~g~~~~ViDVN~-f-Pg~~ 248 (274)
...++. ..... + .++++++|.++.++ +|+.++|+|++ | . |++|||. + |||.
T Consensus 236 -------~~~gg~-~~~~~-------~--~~~~~~~a~~~~~~l~~~g~~~~~vD~~-----g-~-~~iEvN~r~~~~~~ 291 (316)
T 1gsa_A 236 -------LAAGGR-GEPRP-------L--TESDWKIARQIGPTLKEKGLIFVGLDII-----G-D-RLTEINVTSPTCIR 291 (316)
T ss_dssp -------GGGTCE-EEEEE-------C--CHHHHHHHHHHHHHHHHTTCCEEEEEEE-----T-T-EEEEEECSSCCCHH
T ss_pred -------EccCCc-cccCC-------C--CHHHHHHHHHHHHHHHhCCCcEEEEEec-----C-C-EEEEEcCCCCcchH
Confidence 111111 11111 1 24578899988877 59999999998 4 3 7999999 5 5876
Q ss_pred Ccc-----cchHHHHHHHHHHH
Q 024006 249 KMP-----EYEHIFTDFLLSLT 265 (274)
Q Consensus 249 g~~-----~~~~~l~~~l~~~~ 265 (274)
.+. ++.+.+.+++...+
T Consensus 292 ~~~~~~g~~~~~~~~~~~~~~~ 313 (316)
T 1gsa_A 292 EIEAEFPVSITGMLMDAIEARL 313 (316)
T ss_dssp HHHHHSSCCHHHHHHHHHHHHT
T ss_pred HHHHhhCcCHHHHHHHHHHHHh
Confidence 543 23444555554433
No 26
>3q2o_A Phosphoribosylaminoimidazole carboxylase, ATPase; carboxylates, ATP binding, lyase; 1.96A {Bacillus anthracis} PDB: 3qff_A* 3r5h_A*
Probab=99.71 E-value=1.4e-16 Score=149.41 Aligned_cols=175 Identities=12% Similarity=0.154 Sum_probs=125.2
Q ss_pred EeCcHHHHHHhcCHHHHHHHHHhccccCCCCCccCCCEEEEecCCCChhHHHHhcCCCCcEEEeeCcCCCCccceeeEEE
Q 024006 39 VLDPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLA 118 (274)
Q Consensus 39 Vidp~~ai~~l~dR~~~~~~L~~~~~~~~~~~I~~P~~~~~~~~~~~~~~~l~~~~l~~P~VvKp~~a~Gs~~sh~m~iv 118 (274)
+-.++++++.+.||..+.+.|+++ ||++|++..+.+ .+++.+... .++||+|+||..++|+ +.+|.++
T Consensus 100 ~~~~~~~~~~~~dK~~~k~~l~~~-------Gip~p~~~~~~~-~~~~~~~~~--~~g~P~vvKp~~~~~~--g~Gv~~v 167 (389)
T 3q2o_A 100 LPQGSQLLSKTQNRFTEKNAIEKA-------GLPVATYRLVQN-QEQLTEAIA--ELSYPSVLKTTTGGYD--GKGQVVL 167 (389)
T ss_dssp CTTCSHHHHHTTSHHHHHHHHHHT-------TCCCCCEEEESS-HHHHHHHHH--HHCSSEEEEESSCCSS--SCCEEEE
T ss_pred cCCCHHHHHHhcCHHHHHHHHHHC-------CCCCCCeEEECC-HHHHHHHHH--hcCCCEEEEeCCCCCC--CCCeEEE
Confidence 668899999999999999999986 899999998853 223333332 4689999999886433 6899999
Q ss_pred eChhhHhcc-----CCCeEEEecccCCCeEEEEEEECC---EEEEEEEecCCCCcccccccCCceeeecCcccccccCCc
Q 024006 119 YDQYSLKKL-----EPPLVLQEFVNHGGVLFKVYIVGE---AIKVVRRFSLPDVTKQDLSTSAGVFRFPRVSCAAASADD 190 (274)
Q Consensus 119 ~~~~~l~~l-----~~p~vvQefI~h~g~~~KV~VIG~---~v~~~~R~S~p~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 190 (274)
.++++|.+. +.++++||||+ +++++.|.++++ ++.+ .|.. +.....|.+.... .+
T Consensus 168 ~~~~el~~~~~~~~~~~~lvEe~i~-g~~E~~v~~~~~~~G~~~~-----~~~~---e~~~~~g~~~~~~--------~p 230 (389)
T 3q2o_A 168 RSEADVDEARKLANAAECILEKWVP-FEKEVSVIVIRSVSGETKV-----FPVA---ENIHVNNILHESI--------VP 230 (389)
T ss_dssp SSGGGHHHHHHHHHHSCEEEEECCC-CSEEEEEEEEECTTCCEEE-----CCCE---EEEEETTEEEEEE--------ES
T ss_pred CCHHHHHHHHHhcCCCCEEEEeccc-CceEEEEEEEEcCCCCEEE-----ecCe---eeEEcCCceEEEE--------CC
Confidence 999998753 57999999996 359999999965 3322 1110 0000112221000 01
Q ss_pred CCCCccccCCCChHHHHHHHHHHHHHhCCc-eeEEeEEEeCCCCCeEEEEeccCCCCCCC
Q 024006 191 ADLDPCVAELPPRPLLERLAKELRRQLGLR-LFNLDIIREHGTRDQFYVIDINYFPGYGK 249 (274)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~lA~~~~~~lGl~-l~G~Dvi~~~~~g~~~~ViDVN~fPg~~g 249 (274)
..++++. .++++++|.++.++||+. ++++|++++. +| ++||+|||.-||-.+
T Consensus 231 ~~l~~~~-----~~~~~~~a~~~~~~lg~~G~~~ve~~~~~-dg-~~~viEiNpR~~~s~ 283 (389)
T 3q2o_A 231 ARITEEL-----SQKAIAYAKVLADELELVGTLAVEMFATA-DG-EIYINELAPRPHNSG 283 (389)
T ss_dssp CSSCHHH-----HHHHHHHHHHHHHHTTCCEEEEEEEEECT-TS-CEEEEEEESSCCGGG
T ss_pred CCCCHHH-----HHHHHHHHHHHHHHcCCeeEEEEEEEEeC-CC-CEEEEEeeCCCCCch
Confidence 1222222 457899999999999998 8889999985 35 699999999999664
No 27
>3ax6_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, riken structural genomics/proteomics in RSGI, ATP grAsp, ATP binding; HET: ADP; 2.20A {Thermotoga maritima}
Probab=99.70 E-value=5.7e-16 Score=144.42 Aligned_cols=182 Identities=12% Similarity=0.152 Sum_probs=124.9
Q ss_pred HHHHhCCCcEEeCcHHHHHHhcCHHHHHHHHHhccccCCCCCccCCCEEEEecCCCChhHHHHhcCCCCcEEEeeCcCCC
Q 024006 29 EYRQTHPEVTVLDPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADG 108 (274)
Q Consensus 29 ~y~~~~P~v~Vidp~~ai~~l~dR~~~~~~L~~~~~~~~~~~I~~P~~~~~~~~~~~~~~~l~~~~l~~P~VvKp~~a~G 108 (274)
+++++ -++++.+++++++.++||..+.+.|++. ||++|++..+++.+ +. ...++||+|+||..++
T Consensus 79 ~~l~~-~gi~~~~~~~~~~~~~dK~~~~~~l~~~-------gip~p~~~~~~~~~----~~--~~~~~~P~vvKp~~~~- 143 (380)
T 3ax6_A 79 KKLYN-EGYKIHPSPYTLEIIQDKFVQKEFLKKN-------GIPVPEYKLVKDLE----SD--VREFGFPVVQKARKGG- 143 (380)
T ss_dssp HHHHH-TTCEESSCHHHHHHHHSHHHHHHHHHHT-------TCCCCCEEECSSHH----HH--HHTTCSSEEEEESCCC-
T ss_pred HHHHH-CCCeECCCHHHHHHhcCHHHHHHHHHHc-------CCCCCCeEEeCCHH----HH--HHhcCCCEEEEecCCC-
Confidence 34444 3677889999999999999999999986 89999999885221 12 2357899999999853
Q ss_pred CccceeeEEEeChhhHhcc-CCCeEEEecccCCCeEEEEEEECC---EEEEE-EEecCCCCcccccccCCceeeecCccc
Q 024006 109 SAKSHELSLAYDQYSLKKL-EPPLVLQEFVNHGGVLFKVYIVGE---AIKVV-RRFSLPDVTKQDLSTSAGVFRFPRVSC 183 (274)
Q Consensus 109 s~~sh~m~iv~~~~~l~~l-~~p~vvQefI~h~g~~~KV~VIG~---~v~~~-~R~S~p~~~~~~~~~~~g~~~~~~~~~ 183 (274)
-+|.++.++.+.+++... +.++++||||+. |+++.|.++++ ++... ..... + ....+.++.. .
T Consensus 144 -y~g~Gv~~v~~~~el~~~~~~~~lvEe~i~~-g~e~sv~~~~~~~G~~~~~~~~~~~--~-----~~~~~~~~~~--~- 211 (380)
T 3ax6_A 144 -YDGRGVFIIKNEKDLENAIKGETYLEEFVEI-EKELAVMVARNEKGEIACYPVVEMY--F-----DEDANICDTV--I- 211 (380)
T ss_dssp ------EEEECSGGGGGGCCCSSEEEEECCCE-EEEEEEEEEECSSCCEEEEEEEEEC---------------CEE--E-
T ss_pred -CCCCCeEEECCHHHHHHHhcCCEEEEeccCC-CeeEEEEEEECCCCCEEEECCeeee--e-----cccCCeeEEE--E-
Confidence 136789999999998764 478999999963 89999999975 44332 11111 0 0011111100 0
Q ss_pred ccccCCcCCCCccccCCCChHHHHHHHHHHHHHhCCc-eeEEeEEEeCCCCCeEEEEeccCCCCCCC
Q 024006 184 AAASADDADLDPCVAELPPRPLLERLAKELRRQLGLR-LFNLDIIREHGTRDQFYVIDINYFPGYGK 249 (274)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~lA~~~~~~lGl~-l~G~Dvi~~~~~g~~~~ViDVN~fPg~~g 249 (274)
.+..++++. .++++++|.++.++||+. ++++|++++. +| +++++|+|.-||..+
T Consensus 212 -----~p~~l~~~~-----~~~~~~~a~~~~~~lg~~G~~~vd~~~~~-~g-~~~viEiN~R~~~~~ 266 (380)
T 3ax6_A 212 -----APARIEEKY-----SKIAREIATSVVEALEGVGIFGIEMFLTK-QG-EILVNEIAPRPHNSG 266 (380)
T ss_dssp -----ESCSSCHHH-----HHHHHHHHHHHHHHHTCCEEEEEEEEEET-TS-CEEEEEEESSCCGGG
T ss_pred -----CCCCCCHHH-----HHHHHHHHHHHHHHCCCeEEEEEEEEEeC-CC-cEEEEEecCCCCCCc
Confidence 011122211 356899999999999996 7889999985 45 589999999999755
No 28
>3k5i_A Phosphoribosyl-aminoimidazole carboxylase; purine biosynthesis, ATP-grAsp, lyase; HET: NHE ADP AIR; 2.00A {Aspergillus clavatus} PDB: 3k5h_A*
Probab=99.68 E-value=5.6e-16 Score=146.58 Aligned_cols=183 Identities=13% Similarity=0.148 Sum_probs=127.9
Q ss_pred CcEEeCcHHHHHHhcCHHHHHHHHHhccccCCCCCccCCCEEEEec-CCCChhHHHHhcCCCCcEEEeeCcCCCCcccee
Q 024006 36 EVTVLDPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIER-DASSIPDVVLKAGLTLPLVAKPLVADGSAKSHE 114 (274)
Q Consensus 36 ~v~Vidp~~ai~~l~dR~~~~~~L~~~~~~~~~~~I~~P~~~~~~~-~~~~~~~~l~~~~l~~P~VvKp~~a~Gs~~sh~ 114 (274)
++++..++++++.++||..+.+.|+++ ||++|++..+.. +.+++.+.. ..++||+|+||..++ .++.+
T Consensus 108 g~~v~p~~~a~~~~~dK~~~k~~l~~~-------Gip~p~~~~~~~~~~~~~~~~~--~~~g~P~VvKp~~gg--~~g~G 176 (403)
T 3k5i_A 108 EVKIEPSWQAIRTIQNKFNQKEHLRKY-------GIPMAEHRELVENTPAELAKVG--EQLGYPLMLKSKTMA--YDGRG 176 (403)
T ss_dssp TSEESSCHHHHHHHTSHHHHHHHHHTT-------TCCBCCEEEESSCCHHHHHHHH--HHHCSSEEEEESSSC--CTTTT
T ss_pred CCccCcCHHHHHHhcCHHHHHHHHHHC-------CcCCCCEEEEcCCCHHHHHHHH--HHhCCCEEEEeCCCC--cCCCC
Confidence 678999999999999999999999886 899999998852 222333322 247899999998753 13679
Q ss_pred eEEEeChhhHhcc-----CCCeEEEecccCCCeEEEEEEECCEEEEEEEecCCCCcccccccCCceeeecCcccccccCC
Q 024006 115 LSLAYDQYSLKKL-----EPPLVLQEFVNHGGVLFKVYIVGEAIKVVRRFSLPDVTKQDLSTSAGVFRFPRVSCAAASAD 189 (274)
Q Consensus 115 m~iv~~~~~l~~l-----~~p~vvQefI~h~g~~~KV~VIG~~v~~~~R~S~p~~~~~~~~~~~g~~~~~~~~~~~~~~~ 189 (274)
+.++.+++++.+. +.++++||||+ .|+++.|.++++.--. + ..|.. +.....|.+.... .
T Consensus 177 v~~v~~~~el~~a~~~~~~~~~lvEe~i~-~~~E~sv~v~~~~~g~--~-~~p~~---~~~~~~g~~~~~~--------~ 241 (403)
T 3k5i_A 177 NFRVNSQDDIPEALEALKDRPLYAEKWAY-FKMELAVIVVKTKDEV--L-SYPTV---ETVQEDSICKLVY--------A 241 (403)
T ss_dssp EEEECSTTSHHHHHHHTTTSCEEEEECCC-EEEEEEEEEEECSSCE--E-ECCCE---EEEEETTEEEEEE--------E
T ss_pred EEEECCHHHHHHHHHhcCCCcEEEecCCC-CCeEEEEEEEEcCCCE--E-EeCCe---eeEEeCCEEEEEE--------e
Confidence 9999999887653 56899999995 3799999999763110 0 02210 0000122221100 0
Q ss_pred cCC-CCccccCCCChHHHHHHHHHHHHHhCCc-eeEEeEEEeCCCCCeEEEEeccCCCCCCCcc
Q 024006 190 DAD-LDPCVAELPPRPLLERLAKELRRQLGLR-LFNLDIIREHGTRDQFYVIDINYFPGYGKMP 251 (274)
Q Consensus 190 ~~~-~~~~~~~~~~~~~~~~lA~~~~~~lGl~-l~G~Dvi~~~~~g~~~~ViDVN~fPg~~g~~ 251 (274)
+.. ++++. .++++++|.++.++||+. ++++|++++. +| +++|+|||.-||-.|..
T Consensus 242 Pa~~l~~~~-----~~~~~~~a~~i~~~Lg~~G~~~ve~~~~~-dg-~~~v~EiNpR~~~sg~~ 298 (403)
T 3k5i_A 242 PARNVSDAI-----NQKAQELARKAVAAFDGKGVFGVEMFLLE-DD-SIMLCEIASRIHNSGHY 298 (403)
T ss_dssp SCSSCCHHH-----HHHHHHHHHHHHHTSCCSEEEEEEEEEET-TS-CEEEEEEESSCCGGGTT
T ss_pred CCCCCCHHH-----HHHHHHHHHHHHHHcCCeeEEEEEEEEeC-CC-cEEEEEeecCCCCCCce
Confidence 111 22221 356889999999999997 7889999985 35 69999999999987543
No 29
>3orq_A N5-carboxyaminoimidazole ribonucleotide synthetas; ATP-grAsp superfamily, ligase,biosynthetic protein; HET: MSE ADP; 2.23A {Staphylococcus aureus subsp} PDB: 3orr_A
Probab=99.66 E-value=2e-15 Score=141.34 Aligned_cols=172 Identities=15% Similarity=0.207 Sum_probs=122.8
Q ss_pred EeCcHHHHHHhcCHHHHHHHHHhccccCCCCCccCCCEEEEecCCCChhHHHHhcCCCCcEEEeeCcCCCCccceeeEEE
Q 024006 39 VLDPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLA 118 (274)
Q Consensus 39 Vidp~~ai~~l~dR~~~~~~L~~~~~~~~~~~I~~P~~~~~~~~~~~~~~~l~~~~l~~P~VvKp~~a~Gs~~sh~m~iv 118 (274)
+..++++++.++||..+.+.|+++ ||++|++..+. +.+++.+.. ..++||+|+||..+ |+ +++++.++
T Consensus 98 v~p~~~~~~~~~dK~~~k~~l~~~-------Gip~p~~~~~~-~~~~~~~~~--~~~g~P~vvKp~~g-g~-~g~Gv~~v 165 (377)
T 3orq_A 98 IPQGYQAIQLLQDRLTEKETLKSA-------GTKVVPFISVK-ESTDIDKAI--ETLGYPFIVKTRFG-GY-DGKGQVLI 165 (377)
T ss_dssp CTTTTHHHHHHHSHHHHHHHHHHT-------TCCBCCEEEEC-SSTHHHHHH--HHTCSSEEEEESSS-CC-TTTTEEEE
T ss_pred CCCCHHHHHHhcCHHHHHHHHHHC-------CCCCCCeEEEC-CHHHHHHHH--HHcCCCEEEEeCCC-CC-CCCCeEEE
Confidence 457889999999999999999886 89999999885 333444433 34789999999885 22 57889999
Q ss_pred eChhhHhcc-----CCCeEEEecccCCC-eEEEEEEE-C--CEEEEEEEecCCCCcccccccCCceeeecCcccccccCC
Q 024006 119 YDQYSLKKL-----EPPLVLQEFVNHGG-VLFKVYIV-G--EAIKVVRRFSLPDVTKQDLSTSAGVFRFPRVSCAAASAD 189 (274)
Q Consensus 119 ~~~~~l~~l-----~~p~vvQefI~h~g-~~~KV~VI-G--~~v~~~~R~S~p~~~~~~~~~~~g~~~~~~~~~~~~~~~ 189 (274)
.+++++.+. +.++++||||+ | +++.|.++ + +++.+ .|-. +.....|.+... . .
T Consensus 166 ~~~~el~~a~~~~~~~~~ivEe~i~--g~~E~sv~~~~~~~g~~~~-----~~~~---e~~~~~g~~~~~--~------~ 227 (377)
T 3orq_A 166 NNEKDLQEGFKLIETSECVAEKYLN--IKKEVSLTVTRGNNNQITF-----FPLQ---ENEHRNQILFKT--I------V 227 (377)
T ss_dssp CSTTSHHHHHHHHTTSCEEEEECCC--EEEEEEEEEEECGGGCEEE-----CCCE---EEEEETTEEEEE--E------E
T ss_pred CCHHHHHHHHHhcCCCcEEEEccCC--CCEEEEEEEEEeCCCCEEE-----ECCE---eEEEECCEEEEE--E------C
Confidence 999888652 57899999995 6 89999999 3 23332 1110 000011222100 0 0
Q ss_pred cCCCCccccCCCChHHHHHHHHHHHHHhCCc-eeEEeEEEeCCCCCeEEEEeccCCCCCCC
Q 024006 190 DADLDPCVAELPPRPLLERLAKELRRQLGLR-LFNLDIIREHGTRDQFYVIDINYFPGYGK 249 (274)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~lA~~~~~~lGl~-l~G~Dvi~~~~~g~~~~ViDVN~fPg~~g 249 (274)
+..+ ++.++++++|.++.++||+. ++++|++++. +| ++||+|||.-||-.|
T Consensus 228 Pa~l-------~~~~~~~~~a~~i~~~lg~~G~~~ve~~~~~-~g-~~~v~EinpR~~~sg 279 (377)
T 3orq_A 228 PARI-------DKTAEAKEQVNKIIQSIHFIGTFTVEFFIDS-NN-QLYVNEIAPRPHNSG 279 (377)
T ss_dssp SCSS-------CCHHHHHHHHHHHHTTSCCCEEEEEEEEEET-TC-CEEEEEEESSCCGGG
T ss_pred CCCC-------CHHHHHHHHHHHHHHHCCCeEEEEEEEEEeC-CC-cEEEEEeeCCcCCCC
Confidence 1111 12467899999999999998 8899999985 34 699999999999443
No 30
>3aw8_A PURK, phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, riken structural genomics/proteomics in RSGI, ATP grAsp; HET: AMP; 2.60A {Thermus thermophilus}
Probab=99.66 E-value=9.1e-16 Score=142.51 Aligned_cols=175 Identities=13% Similarity=0.150 Sum_probs=122.2
Q ss_pred EEeCcHHHHHHhcCHHHHHHHHHhccccCCCCCccCCCEEEEecCCCChhHHHHhcCCCCcEEEeeCcCC-CCccceeeE
Q 024006 38 TVLDPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVAD-GSAKSHELS 116 (274)
Q Consensus 38 ~Vidp~~ai~~l~dR~~~~~~L~~~~~~~~~~~I~~P~~~~~~~~~~~~~~~l~~~~l~~P~VvKp~~a~-Gs~~sh~m~ 116 (274)
++-++.++++.++||..+.+.|++. ||++|++..++ +.+++.+. ...++||+|+||..++ | +.++.
T Consensus 83 ~~g~~~~~~~~~~dK~~~k~~l~~~-------gip~p~~~~~~-~~~~~~~~--~~~~g~P~vvKp~~~~~~---g~Gv~ 149 (369)
T 3aw8_A 83 PLYPPAKALEVAQDRLREKTFFQGL-------GVPTPPFHPVD-GPEDLEEG--LKRVGLPALLKTRRGGYD---GKGQA 149 (369)
T ss_dssp CBSSCHHHHHHHTCHHHHHHHHHHH-------TCCCCCEEEES-SHHHHHHH--HTTTCSSEEEEECCC---------EE
T ss_pred CcCCCHHHHHHhcCHHHHHHHHHHC-------CCCCCCceeeC-CHHHHHHH--HHHcCCCEEEEEcCCCCC---cceEE
Confidence 6789999999999999999999986 89999999885 22223332 2458899999999864 3 56899
Q ss_pred EEeChhhHhcc-----CCCeEEEecccCCCeEEEEEEECC---EEEEEEEecCCCCcccccccCCceeeecCcccccccC
Q 024006 117 LAYDQYSLKKL-----EPPLVLQEFVNHGGVLFKVYIVGE---AIKVVRRFSLPDVTKQDLSTSAGVFRFPRVSCAAASA 188 (274)
Q Consensus 117 iv~~~~~l~~l-----~~p~vvQefI~h~g~~~KV~VIG~---~v~~~~R~S~p~~~~~~~~~~~g~~~~~~~~~~~~~~ 188 (274)
++.+++++.+. ..++++||||+. |+++.|.++++ ++... +-. ..+. ..++++...
T Consensus 150 ~v~~~~el~~~~~~~~~~~~lvEe~i~~-g~e~sv~~~~d~~G~~~~~-----~~~--~~~~-~~~~~~~~~-------- 212 (369)
T 3aw8_A 150 LVRTEEEALEALKALGGRGLILEGFVPF-DREVSLLAVRGRTGEVAFY-----PLV--ENRH-WGGILRLSL-------- 212 (369)
T ss_dssp EECSHHHHHHHHTTTCSSSEEEEECCCC-SEEEEEEEEECTTSCEEEC-----CCE--EEEE-ETTEEEEEE--------
T ss_pred EECCHHHHHHHHHhcCCCcEEEEEcCCC-CEEEEEEEEECCCCCEEEE-----CCe--eeee-eCCEEEEEE--------
Confidence 99999888653 468999999963 89999999974 44331 100 0010 112222100
Q ss_pred CcCC-CCccccCCCChHHHHHHHHHHHHHhCCc-eeEEeEEEeCCCCCeEEEEeccCCCCCCCc
Q 024006 189 DDAD-LDPCVAELPPRPLLERLAKELRRQLGLR-LFNLDIIREHGTRDQFYVIDINYFPGYGKM 250 (274)
Q Consensus 189 ~~~~-~~~~~~~~~~~~~~~~lA~~~~~~lGl~-l~G~Dvi~~~~~g~~~~ViDVN~fPg~~g~ 250 (274)
.+.. ++++. .++++++|.++.++||+. ++++|++.+. | +++++|+|.-||..+.
T Consensus 213 ~p~~~l~~~~-----~~~~~~~a~~~~~~lg~~G~~~vd~~~~~--~-~~~viEiN~R~~~~~~ 268 (369)
T 3aw8_A 213 APAPGASEAL-----QKKAEAYALRAMEALDYVGVLALEFFQVG--E-ELLFNEMAPRVHNSGH 268 (369)
T ss_dssp ESCTTCCHHH-----HHHHHHHHHHHHHHHTCCEEEEEEEEEET--T-EEEEEEEESSCCGGGT
T ss_pred CCCCCCCHHH-----HHHHHHHHHHHHHHCCCeeEEEEEEEEEC--C-cEEEEEEeCCcCCccc
Confidence 0111 22211 356899999999999998 7889999985 4 6899999999997554
No 31
>3vot_A L-amino acid ligase, BL00235; ATP-grAsp motif, ATP-binding; HET: ADP PG4; 1.80A {Bacillus licheniformis}
Probab=99.65 E-value=4.6e-15 Score=140.34 Aligned_cols=173 Identities=17% Similarity=0.203 Sum_probs=117.3
Q ss_pred CcHHHHHHhcCHHHHHHHHHhccccCCCCCccCCCEEEEecCCCChhHHHHhcCCCCcEEEeeCcCCCCccceeeEEEeC
Q 024006 41 DPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYD 120 (274)
Q Consensus 41 dp~~ai~~l~dR~~~~~~L~~~~~~~~~~~I~~P~~~~~~~~~~~~~~~l~~~~l~~P~VvKp~~a~Gs~~sh~m~iv~~ 120 (274)
.++++++.++||..|-+.|++. ||++|++..+++. +++ ....++||+|+||..|+ +|.+|.++.+
T Consensus 102 ~~~~~~~~~~dK~~~k~~l~~~-------gip~p~~~~~~~~-~~~----~~~~~g~P~vvKp~~g~---gs~Gv~~v~~ 166 (425)
T 3vot_A 102 LPFTTMENCRNKNKTRSILQQN-------GLNTPVFHEFHTL-ADL----ENRKLSYPLVVKPVNGF---SSQGVVRVDD 166 (425)
T ss_dssp CCHHHHHHHHCHHHHHHHHHHT-------TCCCCCEEEESSG-GGG----TTCCCCSSEEEEESCC--------CEEECS
T ss_pred CCHHHHHHhhCHHHHHHHHHHC-------CCCCCceeccCcH-HHH----HHhhcCCcEEEEECCCC---CCCCceEech
Confidence 5789999999999999999986 8999999998532 222 23578999999998854 4779999999
Q ss_pred hhhHhcc------------------CCCeEEEecccCCCeEEEEEEE--CCEEEE--EEEecCCCCcccccccCCceeee
Q 024006 121 QYSLKKL------------------EPPLVLQEFVNHGGVLFKVYIV--GEAIKV--VRRFSLPDVTKQDLSTSAGVFRF 178 (274)
Q Consensus 121 ~~~l~~l------------------~~p~vvQefI~h~g~~~KV~VI--G~~v~~--~~R~S~p~~~~~~~~~~~g~~~~ 178 (274)
+++|.+. +.++++||||+ |..|-|.++ ++++.. ..++.... +.+..
T Consensus 167 ~~el~~a~~~~~~~~~~~~~~~~~~~~~~lvEe~i~--G~e~sv~~~~~~g~~~~~~~~~~~~~~----------~~~~~ 234 (425)
T 3vot_A 167 RKELEEAVRKVEAVNQRDLNRFVHGKTGIVAEQFID--GPEFAIETLSIQGNVHVLSIGYKGNSK----------GPFFE 234 (425)
T ss_dssp HHHHHHHHHHHHHHTTSSHHHHHTTCCCEEEEECCC--SCEEEEEEEEETTEEEEEEEEEEECCC----------CSBCC
T ss_pred HHHHHHHHHHHHhhhhhhhhhhccCCCcEEEEEEec--CcEEEEEEEEeCCcEEEEeEEEEeccC----------CCccc
Confidence 9887541 46799999995 777776444 566543 23332110 00000
Q ss_pred cCcccccccCCcCCCCccccCCCChHHHHHHHHHHHHHhCCc--eeEEeEEEeCCCCCeEEEEeccCCCCCCCccc
Q 024006 179 PRVSCAAASADDADLDPCVAELPPRPLLERLAKELRRQLGLR--LFNLDIIREHGTRDQFYVIDINYFPGYGKMPE 252 (274)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lA~~~~~~lGl~--l~G~Dvi~~~~~g~~~~ViDVN~fPg~~g~~~ 252 (274)
.... ..+..++++. .+++.++|.++.++||+. ++.+|++++. +| ++|++|+|.-||-.+++.
T Consensus 235 ~~~~-----~~Pa~l~~~~-----~~~i~~~~~~~~~alg~~~G~~~ve~~~~~-dG-~~~~iEiN~R~gG~~~~~ 298 (425)
T 3vot_A 235 EGVY-----IAPAQLKEET-----RLAIVKEVTGAVSALGIHQGPAHTELRLDK-DG-TPYVIEVGARIGGSGVSH 298 (425)
T ss_dssp CCEE-----EESCCCCHHH-----HHHHHHHHHHHHHHTTCCSEEEEEEEEECT-TC-CEEEEEEESSCGGGGHHH
T ss_pred cceE-----eecccCCHHH-----HHHHHHHHHHHHHHcCCCcceEEEEEEEEe-CC-cEEEEEEecCCCCCCchH
Confidence 0000 0111222221 356889999999999984 7889999985 45 689999999998766554
No 32
>4dim_A Phosphoribosylglycinamide synthetase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, ligase; 2.61A {Anaerococcus prevotii}
Probab=99.65 E-value=1.4e-15 Score=142.59 Aligned_cols=178 Identities=19% Similarity=0.251 Sum_probs=118.7
Q ss_pred EeCcHHHHHHhcCHHHHHHHHHhccccCCCCCccCCCEEEEecCCCChhHHHHhcCCCCcEEEeeCcCCCCccceeeEEE
Q 024006 39 VLDPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLA 118 (274)
Q Consensus 39 Vidp~~ai~~l~dR~~~~~~L~~~~~~~~~~~I~~P~~~~~~~~~~~~~~~l~~~~l~~P~VvKp~~a~Gs~~sh~m~iv 118 (274)
+-+++++++.+.||..+.+.|++. ||++|++..++ +.++..+.. ..++||+|+||..|+ +|.+|.++
T Consensus 97 ~g~~~~~~~~~~dK~~~~~~l~~~-------gip~p~~~~~~-~~~~~~~~~--~~~g~P~vvKp~~g~---gg~Gv~~v 163 (403)
T 4dim_A 97 VGLNEEAAIMCGDKYKMKEAFKKY-------NVNTARHFVVR-NENELKNAL--ENLKLPVIVKATDLQ---GSKGIYIA 163 (403)
T ss_dssp SSCCHHHHHHHHCHHHHHHHHHHH-------TCCCCCEECCC-SHHHHHHHH--HTSCSSEEEECSCC--------CEEE
T ss_pred CCCCHHHHHHHhCHHHHHHHHHHc-------CCCCCCEEEeC-CHHHHHHHH--hcCCCCEEEEECCCC---CCCCEEEE
Confidence 368899999999999999999986 89999998775 222233322 368999999999864 46799999
Q ss_pred eChhhHhcc---------CCCeEEEecccCCCeEEEE--EEECCEEEEEEEecCCCCcccccccCCceeeecCccccccc
Q 024006 119 YDQYSLKKL---------EPPLVLQEFVNHGGVLFKV--YIVGEAIKVVRRFSLPDVTKQDLSTSAGVFRFPRVSCAAAS 187 (274)
Q Consensus 119 ~~~~~l~~l---------~~p~vvQefI~h~g~~~KV--~VIG~~v~~~~R~S~p~~~~~~~~~~~g~~~~~~~~~~~~~ 187 (274)
.++++|.+. +.++++||||+ |..+-| ++.++++....... +... .+.+. ... + .
T Consensus 164 ~~~~el~~~~~~~~~~~~~~~~lvEe~i~--g~e~sv~~~~~~g~~~~~~~~~--~~~~------~~~~~---~~~-~-~ 228 (403)
T 4dim_A 164 KKEEEAIDGFNETMNLTKRDYCIVEEFIE--GYEFGAQAFVYKNDVLFVMPHG--DETY------MSHTA---VPV-G-H 228 (403)
T ss_dssp SSHHHHHHHHHHHHHHCSSSCCEEEECCC--SEEEEEEEEEETTEEEEEEEEE--EEEE------ESSSE---EEE-E-E
T ss_pred CCHHHHHHHHHHHHhcCcCCcEEEEEccC--CcEEEEEEEEECCEEEEEEEec--ceec------cCCCC---cce-e-E
Confidence 999988642 46899999996 565555 44577766432110 0000 00000 000 0 0
Q ss_pred CCcCCCCccccCCCChHHHHHHHHHHHHHhCCc--eeEEeEEEeCCCCCeEEEEeccCCCCCCCccc
Q 024006 188 ADDADLDPCVAELPPRPLLERLAKELRRQLGLR--LFNLDIIREHGTRDQFYVIDINYFPGYGKMPE 252 (274)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~lA~~~~~~lGl~--l~G~Dvi~~~~~g~~~~ViDVN~fPg~~g~~~ 252 (274)
..+..++++. .+++.++|.++.++||+. .+++|+++++ | ++|++|||.-||-.+++.
T Consensus 229 ~~p~~l~~~~-----~~~l~~~a~~~~~~lg~~gg~~~ve~~~~~--~-~~~~iEiN~R~~~~~~~~ 287 (403)
T 4dim_A 229 YVPLDVKDDI-----IEKTKTEVKKAIKALGLNNCAVNVDMILKD--N-EVYIIELTGRVGANCLPE 287 (403)
T ss_dssp EESCCSCHHH-----HHHHHHHHHHHHHHHTCCSEEEEEEEEEET--T-EEEEEEEESSCCSTTHHH
T ss_pred EeCCCCCHHH-----HHHHHHHHHHHHHHcCCCCCcEEEEEEEEC--C-cEEEEEEcCCCCCCcHHH
Confidence 0111222221 456889999999999998 5789999973 4 699999999999876554
No 33
>3df7_A Putative ATP-grAsp superfamily protein; putative protein, PSI-II, nysgrc., structural genomics, protein structure initiative; 1.87A {Archaeoglobus fulgidus}
Probab=99.64 E-value=1.9e-15 Score=137.92 Aligned_cols=165 Identities=19% Similarity=0.231 Sum_probs=115.1
Q ss_pred HHHHHHHHHhCCCcEEeCcHHHHHHhcCHHHHHHHHHhccccCCCCCccCCCEEEEecCCCChhHHHHhcCCCCcEEEee
Q 024006 24 RQILEEYRQTHPEVTVLDPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKP 103 (274)
Q Consensus 24 ~~~l~~y~~~~P~v~Vidp~~ai~~l~dR~~~~~~L~~~~~~~~~~~I~~P~~~~~~~~~~~~~~~l~~~~l~~P~VvKp 103 (274)
.+.+.+..+. ++.++.+++++++.++||..+.+.|++ ||++|++.. ..++||+|+||
T Consensus 84 l~~~~~~l~~-~g~~~g~~~~~~~~~~dK~~~~~~l~~--------Gip~p~~~~--------------~~~~~P~vvKP 140 (305)
T 3df7_A 84 LYTLTKKAEK-YCENLGSSSRAIAVTSDKWELYKKLRG--------EVQVPQTSL--------------RPLDCKFIIKP 140 (305)
T ss_dssp HHHHHHHHHT-TSEESSCCHHHHHHHTSHHHHHHHHTT--------TSCCCCEES--------------SCCSSSEEEEE
T ss_pred HHHHHHHHHh-cCCccCCCHHHHHHhcCHHHHHHHHHh--------CCCCCCEec--------------ccCCCCEEEEe
Confidence 3445555555 557899999999999999999999876 588999873 24789999999
Q ss_pred CcCCCCccceeeEEEeChhhHhccCCCeEEEecccCCCeEEEEEEECC-EEEEEEEe-cCCCCcccccccCCceeeecCc
Q 024006 104 LVADGSAKSHELSLAYDQYSLKKLEPPLVLQEFVNHGGVLFKVYIVGE-AIKVVRRF-SLPDVTKQDLSTSAGVFRFPRV 181 (274)
Q Consensus 104 ~~a~Gs~~sh~m~iv~~~~~l~~l~~p~vvQefI~h~g~~~KV~VIG~-~v~~~~R~-S~p~~~~~~~~~~~g~~~~~~~ 181 (274)
..|+ +|.++.++.+ .+.++++||||+ |+++.|.++++ .+....+. ... + . +.+..
T Consensus 141 ~~g~---gs~Gv~~v~~------~~~~~lvEe~I~--G~e~sv~v~~g~~~~~~~~~~~~~-----~---~---~~~~g- 197 (305)
T 3df7_A 141 RTAC---AGEGIGFSDE------VPDGHIAQEFIE--GINLSVSLAVGEDVKCLSVNEQII-----N---N---FRYAG- 197 (305)
T ss_dssp SSCC-------CBCCSS------CCTTEEEEECCC--SEEEEEEEEESSSEEEEEEEEEEE-----E---T---TEEEE-
T ss_pred CCCC---CCCCEEEEec------CCCCEEEEeccC--CcEEEEEEEeCCeEEEEEEeeEec-----c---C---ceecc-
Confidence 9965 3567888777 567899999996 99999999954 34332211 100 0 0 11110
Q ss_pred ccccccCCcCCCCccccCCCChHHHHHHHHHHHHHh-CCc-eeEEeEEEeCCCCCeEEEEeccCCCCCC
Q 024006 182 SCAAASADDADLDPCVAELPPRPLLERLAKELRRQL-GLR-LFNLDIIREHGTRDQFYVIDINYFPGYG 248 (274)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lA~~~~~~l-Gl~-l~G~Dvi~~~~~g~~~~ViDVN~fPg~~ 248 (274)
+ ..+..++++. .++++++|.++.++| |+. ++|+|++++ | ++|++|||.-||..
T Consensus 198 ---~--~~p~~l~~~~-----~~~i~~~a~~~~~~l~g~~G~~~vD~~~~---~-~~~viEiNpR~~~~ 252 (305)
T 3df7_A 198 ---A--VVPARISDEV-----KREVVEEAVRAVECVEGLNGYVGVDIVYS---D-QPYVIEINARLTTP 252 (305)
T ss_dssp ---E--EESCCCCHHH-----HHHHHHHHHHHHTTSTTCCEEEEEEEEES---S-SEEEEEEESSCCGG
T ss_pred ---c--cccCCCCHHH-----HHHHHHHHHHHHHHcCCCcCceEEEEEEC---C-CEEEEEEcCCCCCC
Confidence 0 0111222211 367899999999999 976 778999994 3 48999999999974
No 34
>4e4t_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.55A {Burkholderia ambifaria} PDB: 3uvz_A
Probab=99.63 E-value=4.8e-15 Score=141.05 Aligned_cols=187 Identities=13% Similarity=0.108 Sum_probs=127.3
Q ss_pred HHHHHHhCCCcEEeCcHHHHHHhcCHHHHHHHHHhccccCCCCCccCCCEEEEecCCCChhHHHHh--cCCCCcEEEeeC
Q 024006 27 LEEYRQTHPEVTVLDPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLK--AGLTLPLVAKPL 104 (274)
Q Consensus 27 l~~y~~~~P~v~Vidp~~ai~~l~dR~~~~~~L~~~~~~~~~~~I~~P~~~~~~~~~~~~~~~l~~--~~l~~P~VvKp~ 104 (274)
+.+++++. .++..++++++.+.||..+-+.|+++ ||++|++..+++. +++.+...+ ..+ ||+|+||.
T Consensus 111 ~~~~l~~~--~~vgp~~~a~~~~~dK~~~k~~l~~~-------Gip~p~~~~v~~~-~e~~~~~~~~~~~~-~P~VvKp~ 179 (419)
T 4e4t_A 111 SLDFLART--TFVAPAGRCVAVAQDRIAEKRFIEAS-------GVPVAPHVVIESA-AALAALDDAALDAV-LPGILKTA 179 (419)
T ss_dssp HHHHHHTT--SEESSCHHHHHHHTCHHHHHHHHHHT-------TCCBCCEEEECSH-HHHHTSCHHHHHTT-CSEEEEES
T ss_pred HHHHHHcc--CCcCCCHHHHHHhcCHHHHHHHHHHc-------CcCCCCeEEECCH-HHHHHHHHhhcccc-CCEEEEec
Confidence 33445554 48899999999999999999999886 8999999988522 122211111 017 99999998
Q ss_pred cCCCCccceeeEEEeChhhHhcc-----CCCeEEEecccCCCeEEEEEEECC---EEEEEEEecCCCCcccccccCCcee
Q 024006 105 VADGSAKSHELSLAYDQYSLKKL-----EPPLVLQEFVNHGGVLFKVYIVGE---AIKVVRRFSLPDVTKQDLSTSAGVF 176 (274)
Q Consensus 105 ~a~Gs~~sh~m~iv~~~~~l~~l-----~~p~vvQefI~h~g~~~KV~VIG~---~v~~~~R~S~p~~~~~~~~~~~g~~ 176 (274)
.+ |+ ++.++.++.+++++... +.++++||||+. ++++.|.++++ ++.. .|-. +....+|.+
T Consensus 180 ~~-g~-~G~Gv~~v~~~~el~~a~~~~~~~~~lvEe~i~~-~~Eisv~v~~~~~G~~~~-----~~~~---e~~~~~g~~ 248 (419)
T 4e4t_A 180 RL-GY-DGKGQVRVSTAREARDAHAALGGVPCVLEKRLPL-KYEVSALIARGADGRSAA-----FPLA---QNVHHNGIL 248 (419)
T ss_dssp SS-CC-TTTTEEEECSHHHHHHHHHHTTTCCEEEEECCCE-EEEEEEEEEECTTSCEEE-----CCCE---EEEEETTEE
T ss_pred CC-CC-CCCceEEECCHHHHHHHHHhcCCCcEEEeecCCC-CeEEEEEEEEcCCCCEEE-----EeCe---EEEeeCCeE
Confidence 42 33 47899999999988653 578999999963 78999999953 2321 1110 000011222
Q ss_pred eecCcccccccCCcCC-CCccccCCCChHHHHHHHHHHHHHhCCc-eeEEeEEEeCCCCCeEEEEeccCCCCCCCc
Q 024006 177 RFPRVSCAAASADDAD-LDPCVAELPPRPLLERLAKELRRQLGLR-LFNLDIIREHGTRDQFYVIDINYFPGYGKM 250 (274)
Q Consensus 177 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~lA~~~~~~lGl~-l~G~Dvi~~~~~g~~~~ViDVN~fPg~~g~ 250 (274)
...- .+.. ++++. .++++++|.++.++||+. ++++|++++. +| ++||+|||.-||-.+.
T Consensus 249 ~~~~--------~Pa~~l~~~~-----~~~~~~~a~~i~~~lg~~G~~~vE~~~~~-dG-~~~v~EiNpR~~~sg~ 309 (419)
T 4e4t_A 249 ALTI--------VPAPAADTAR-----VEEAQQAAVRIADTLGYVGVLCVEFFVLE-DG-SFVANEMAPRPHNSGH 309 (419)
T ss_dssp EEEE--------ESCTTCCHHH-----HHHHHHHHHHHHHHHTCCEEEEEEEEEET-TC-CEEEEEEESSCCGGGT
T ss_pred EEEE--------cCCCCCCHHH-----HHHHHHHHHHHHHHCCCeeEEEEEEEEeC-CC-CEEEEEEeCCCCCCCC
Confidence 1100 0111 22221 357889999999999998 8889999985 45 6899999999996543
No 35
>2pn1_A Carbamoylphosphate synthase large subunit; ZP_00538348.1, ATP-grAsp domain, carbamoylphosphate synthase subunit (split gene in MJ); 2.00A {Exiguobacterium sibiricum}
Probab=99.62 E-value=6.1e-15 Score=134.35 Aligned_cols=178 Identities=20% Similarity=0.215 Sum_probs=108.2
Q ss_pred HHHHHHHHhCCCcE-EeCcHHHHHHhcCHHHHHHHHHhccccCCCCCccCCCEEEEecCCCChhHHHHhcCCCCcEEEee
Q 024006 25 QILEEYRQTHPEVT-VLDPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKP 103 (274)
Q Consensus 25 ~~l~~y~~~~P~v~-Vidp~~ai~~l~dR~~~~~~L~~~~~~~~~~~I~~P~~~~~~~~~~~~~~~l~~~~l~~P~VvKp 103 (274)
..+.+.++. .+++ +.+++++++.+.||+.+.+.|++. ||++|++.... +++.+.+....++||+|+||
T Consensus 88 a~~~~~l~~-~g~~~~~~~~~~~~~~~dK~~~~~~l~~~-------gip~p~~~~~~---~~~~~~~~~~~~~~P~vvKp 156 (331)
T 2pn1_A 88 AQATERFQA-IGVTVIVSPYAACELCFDKYTMYEYCLRQ-------GIAHARTYATM---ASFEEALAAGEVQLPVFVKP 156 (331)
T ss_dssp HHTHHHHHT-TTCEECCCCHHHHHHHHBHHHHHHHHHHH-------TCCCCCEESSH---HHHHHHHHTTSSCSCEEEEE
T ss_pred HHHHHHHHh-CCcEEecCCHHHHHHhhCHHHHHHHHHHc-------CCCCCcEEecH---HHhhhhhhcccCCCCEEEEe
Confidence 344445554 4665 468899999999999999999986 89999986531 12223232246899999999
Q ss_pred CcCCCCccceeeEEEeChhhHhcc---CCCeEEEecccCCCeEEEEEEEC----CEEE-EEEEecCCCCcccccccCCce
Q 024006 104 LVADGSAKSHELSLAYDQYSLKKL---EPPLVLQEFVNHGGVLFKVYIVG----EAIK-VVRRFSLPDVTKQDLSTSAGV 175 (274)
Q Consensus 104 ~~a~Gs~~sh~m~iv~~~~~l~~l---~~p~vvQefI~h~g~~~KV~VIG----~~v~-~~~R~S~p~~~~~~~~~~~g~ 175 (274)
..|+ +|.++.++.+.+++... ..++++||||+ |.++.|.+++ +++. ...+.... . ..|.
T Consensus 157 ~~g~---g~~gv~~v~~~~el~~~~~~~~~~lvee~i~--G~e~~v~~~~d~~~G~~~~~~~~~~~~-~-------~~g~ 223 (331)
T 2pn1_A 157 RNGS---ASIEVRRVETVEEVEQLFSKNTDLIVQELLV--GQELGVDAYVDLISGKVTSIFIKEKLT-M-------RAGE 223 (331)
T ss_dssp SBC--------------------------CEEEEECCC--SEEEEEEEEECTTTCCEEEEEEEEEEE-E-------ETTE
T ss_pred CCCC---CCCCeEEeCCHHHHHHHHHhCCCeEEEecCC--CcEEEEEEEEecCCCeEEEEEEEEEEE-e-------cCCc
Confidence 9865 36789999999888764 46899999995 7999998886 3444 33333210 0 0111
Q ss_pred eeecCcccccccCCcCCCCccccCCCChHHHHHHHHHHHHHhCCc-eeEEeEEEeCCCCCeEEEEeccC-CCCCC
Q 024006 176 FRFPRVSCAAASADDADLDPCVAELPPRPLLERLAKELRRQLGLR-LFNLDIIREHGTRDQFYVIDINY-FPGYG 248 (274)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lA~~~~~~lGl~-l~G~Dvi~~~~~g~~~~ViDVN~-fPg~~ 248 (274)
... + . + +..+++.++|.++.++||+. ++++|++.+ +| +++++|||. +||..
T Consensus 224 ~~~---~------~-----~-----~~~~~~~~~~~~~~~~lg~~G~~~vd~~~~--~g-~~~~iEiN~R~~g~~ 276 (331)
T 2pn1_A 224 TDK---S------R-----S-----VLRDDVFELVEHVLDGSGLVGPLDFDLFDV--AG-TLYLSEINPRFGGGY 276 (331)
T ss_dssp EEE---E------E-----E-----ECCHHHHHHHHHHHTTTCCCEEEEEEEEEE--TT-EEEEEEEESSCCTTH
T ss_pred eeE---e------E-----E-----eccHHHHHHHHHHHHHhCCcceEEEEEEEc--CC-CEEEEEEeCCCCCch
Confidence 100 0 0 0 01356899999999999995 778999964 34 689999999 56653
No 36
>3eth_A Phosphoribosylaminoimidazole carboxylase ATPase subunit; ATP-grAsp, purine biosynthesis, antimicrobial, ATP-binding, decarboxylase, lyase; HET: ATP; 1.60A {Escherichia coli} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1b6r_A* 3etj_A* 1b6s_A*
Probab=99.62 E-value=1.5e-14 Score=135.06 Aligned_cols=175 Identities=9% Similarity=0.043 Sum_probs=126.0
Q ss_pred EEeCcHHHHHHhcCHHHHHHHHHhccccCCCCCccCCCEEEEecCCCChhHHHHhcCCCCcEEEeeCcCCCCccceeeEE
Q 024006 38 TVLDPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSL 117 (274)
Q Consensus 38 ~Vidp~~ai~~l~dR~~~~~~L~~~~~~~~~~~I~~P~~~~~~~~~~~~~~~l~~~~l~~P~VvKp~~a~Gs~~sh~m~i 117 (274)
.|..++++++.++||..+-+.|+++ |||+|++..++ +.+++.+... .++||+|+||..+ |+ +++++.+
T Consensus 66 ~v~p~~~a~~~~~DK~~~k~~l~~~-------GIptp~~~~v~-~~~e~~~~~~--~~G~P~VvKp~~~-G~-~GkGv~~ 133 (355)
T 3eth_A 66 PAFVNRDVFPIIADRLTQKQLFDKL-------HLPTAPWQLLA-ERSEWPAVFD--RLGELAIVKRRTG-GY-DGRGQWR 133 (355)
T ss_dssp TTBTTTTHHHHHHSHHHHHHHHHHT-------TCCBCCEEEEC-CGGGHHHHHH--HHCSEEEEEESSS-CC-TTTTEEE
T ss_pred CcCCCHHHHHHhcCHHHHHHHHHHC-------ccCCCCEEEEC-CHHHHHHHHH--HcCCCEEEEecCC-CC-CCCeEEE
Confidence 6888999999999999999999886 89999999885 3334444333 4789999999884 44 5789999
Q ss_pred EeC--hhhHhc--cCCCeEEEecccCCCeEEEEEEECC---EEEEEEEecCCCCcccccccCCceeeecCcccccccCCc
Q 024006 118 AYD--QYSLKK--LEPPLVLQEFVNHGGVLFKVYIVGE---AIKVVRRFSLPDVTKQDLSTSAGVFRFPRVSCAAASADD 190 (274)
Q Consensus 118 v~~--~~~l~~--l~~p~vvQefI~h~g~~~KV~VIG~---~v~~~~R~S~p~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 190 (274)
+.+ ++++.+ ++ ++++||||+ .++++-|.++++ ++.. .|-. +.....|.+.... .+
T Consensus 134 v~~~~~~el~~a~~~-~vivEe~I~-~~~Eisv~v~~~~~G~~~~-----~p~~---e~~~~~g~~~~~~--------~p 195 (355)
T 3eth_A 134 LRANETEQLPAECYG-ECIVEQGIN-FSGEVSLVGARGFDGSTVF-----YPLT---HNLHQDGILRTSV--------AF 195 (355)
T ss_dssp EETTCGGGSCGGGTT-TEEEEECCC-CSEEEEEEEEECTTSCEEE-----CCCE---EEEEETTEEEEEE--------EC
T ss_pred EcCCCHHHHHHHhhC-CEEEEEccC-CCcEEEEEEEEcCCCCEEE-----ECCE---EEEeeCCeEEEEE--------CC
Confidence 999 888865 24 799999997 489999999853 3322 1210 1001122222110 01
Q ss_pred CCCCccccCCCChHHHHHHHHHHHHHhCCc-eeEEeEEEeCCCCCeEEEEeccCCCCCCCc
Q 024006 191 ADLDPCVAELPPRPLLERLAKELRRQLGLR-LFNLDIIREHGTRDQFYVIDINYFPGYGKM 250 (274)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~lA~~~~~~lGl~-l~G~Dvi~~~~~g~~~~ViDVN~fPg~~g~ 250 (274)
..++++. .++++++|.++.++||+. ++++|+++++ + ++||+|||.-||-.|.
T Consensus 196 a~l~~~~-----~~~~~~~a~~i~~aLg~~G~~~vEf~~~~--~-~~~v~EinpR~~~sg~ 248 (355)
T 3eth_A 196 PQANAQQ-----QARAEEMLSAIMQELGYVGVMAMECFVTP--Q-GLLINELAPRVHNSGH 248 (355)
T ss_dssp SSCCHHH-----HHHHHHHHHHHHHHHTCCEEEEEEEEEET--T-EEEEEEEESSCCGGGT
T ss_pred CCCCHHH-----HHHHHHHHHHHHHHCCCeeEEEEEEEEEC--C-cEEEEEeeCCCCCCcc
Confidence 1223222 456899999999999997 7889999984 3 6999999999997554
No 37
>1kjq_A GART 2, phosphoribosylglycinamide formyltransferase 2, 5'-; ATP-grAsp, purine biosynthesis, nucleotide; HET: ADP MPO; 1.05A {Escherichia coli} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1kj9_A* 1kji_A* 1kjj_A* 1kj8_A* 1eyz_A* 1ez1_A*
Probab=99.60 E-value=4.1e-15 Score=138.69 Aligned_cols=177 Identities=13% Similarity=0.208 Sum_probs=120.9
Q ss_pred CcEEeCcHHHHHHhcCHHHHHHHH-HhccccCCCCCccCCCEEEEecCCCChhHHHHhcCCCCcEEEeeCcCCCCcccee
Q 024006 36 EVTVLDPPYAIQHLHNRQSMLQCV-ADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHE 114 (274)
Q Consensus 36 ~v~Vidp~~ai~~l~dR~~~~~~L-~~~~~~~~~~~I~~P~~~~~~~~~~~~~~~l~~~~l~~P~VvKp~~a~Gs~~sh~ 114 (274)
++++.+++++++.+.||..+.+.| ++. ||++|++..+. +.+++.+.+. .++||+|+||..++ +|.+
T Consensus 97 gi~~~~~~~~~~~~~dK~~~~~~l~~~~-------gip~p~~~~~~-~~~~~~~~~~--~~g~P~vvKp~~g~---gg~G 163 (391)
T 1kjq_A 97 GLNVVPCARATKLTMNREGIRRLAAEEL-------QLPTSTYRFAD-SESLFREAVA--DIGYPCIVKPVMSS---SGKG 163 (391)
T ss_dssp TCEESSCHHHHHHHHSHHHHHHHHHTTS-------CCCBCCEEEES-SHHHHHHHHH--HHCSSEEEEESCC------CC
T ss_pred CCCcCCCHHHHHHhhCHHHHHHHHHHhC-------CCCCCCeeeeC-CHHHHHHHHH--hcCCCEEEEeCCCC---CCCC
Confidence 567889999999999999999998 665 89999999885 2223333332 36899999998753 4678
Q ss_pred eEEEeChhhHhcc-----------CCCeEEEecccCCCeEEEEEEECC--EEEEEEEecCCCCcccccccCCceeeecCc
Q 024006 115 LSLAYDQYSLKKL-----------EPPLVLQEFVNHGGVLFKVYIVGE--AIKVVRRFSLPDVTKQDLSTSAGVFRFPRV 181 (274)
Q Consensus 115 m~iv~~~~~l~~l-----------~~p~vvQefI~h~g~~~KV~VIG~--~v~~~~R~S~p~~~~~~~~~~~g~~~~~~~ 181 (274)
|.++.+++++.+. +.++++||||+. |.++.|.++++ .+.. .+.. +... ..+.+. ..
T Consensus 164 v~~v~~~~el~~~~~~~~~~~~~~~~~~lvEe~i~~-g~E~sv~~~~~~~g~~~-----~~~~--~~~~-~~~~~~--~~ 232 (391)
T 1kjq_A 164 QTFIRSAEQLAQAWKYAQQGGRAGAGRVIVEGVVKF-DFEITLLTVSAVDGVHF-----CAPV--GHRQ-EDGDYR--ES 232 (391)
T ss_dssp CEEECSGGGHHHHHHHHHHHSGGGCCCEEEEECCCC-SEEEEEEEEEETTEEEE-----CCCE--EEEE-ETTEEE--EE
T ss_pred eEEECCHHHHHHHHHHHHhhcccCCCCEEEEEecCC-CeEEEEEEEEeCCCeEE-----ccCc--ceEE-ECCEEE--EE
Confidence 9999999887531 468999999974 89999988853 3211 1100 0000 011111 00
Q ss_pred ccccccCCcCCCCccccCCCChHHHHHHHHHHHHHhCCc-eeEEeEEEeCCCCCeEEEEeccCCCCCCCc
Q 024006 182 SCAAASADDADLDPCVAELPPRPLLERLAKELRRQLGLR-LFNLDIIREHGTRDQFYVIDINYFPGYGKM 250 (274)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lA~~~~~~lGl~-l~G~Dvi~~~~~g~~~~ViDVN~fPg~~g~ 250 (274)
.+ +..++++. .++++++|.++.++||+. ++++|++++.+ ++|++|+|.-||..+.
T Consensus 233 ~~------p~~l~~~~-----~~~~~~~a~~~~~~lg~~G~~~ve~~~~~~---~~~viEiN~R~~~~~~ 288 (391)
T 1kjq_A 233 WQ------PQQMSPLA-----LERAQEIARKVVLALGGYGLFGVELFVCGD---EVIFSEVSPRPHDTGM 288 (391)
T ss_dssp EE------CCCCCHHH-----HHHHHHHHHHHHHHHCSSEEEEEEEEEETT---EEEEEEEESSCCGGGG
T ss_pred Ee------CCCCCHHH-----HHHHHHHHHHHHHHcCCeeEEEEEEEEeCC---cEEEEEEECCCCCCcc
Confidence 00 11122211 356899999999999994 77899999852 5899999999996654
No 38
>2z04_A Phosphoribosylaminoimidazole carboxylase ATPase subunit; purine nucleotide biosynthetic pathway, structural genomics, NPPSFA; 2.35A {Aquifex aeolicus}
Probab=99.60 E-value=4.7e-15 Score=137.35 Aligned_cols=171 Identities=16% Similarity=0.181 Sum_probs=100.3
Q ss_pred EEeCcHHHHHHhcCHHHHHHHHHhccccCCCCCccCCCEEEEecCCCChhHHHHhcCCCCcEEEeeCcCC-CCccceeeE
Q 024006 38 TVLDPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVAD-GSAKSHELS 116 (274)
Q Consensus 38 ~Vidp~~ai~~l~dR~~~~~~L~~~~~~~~~~~I~~P~~~~~~~~~~~~~~~l~~~~l~~P~VvKp~~a~-Gs~~sh~m~ 116 (274)
++.+++++++.+.||..+.+.|++. ||++|++..++ . +++.+.+ ..++||+|+||..++ | |.++.
T Consensus 79 ~~g~~~~~~~~~~dK~~~~~~l~~~-------gip~p~~~~~~-~-~~~~~~~--~~~~~P~vvKp~~~~~~---g~Gv~ 144 (365)
T 2z04_A 79 KLIPNPQALYVKKSRIREKLFLKKH-------GFPVPEFLVIK-R-DEIIDAL--KSFKLPVVIKAEKLGYD---GKGQY 144 (365)
T ss_dssp TBSSCTHHHHHHTCHHHHHHHHHTT-------TCCCCCEEEC------------------CEEEECC-------------
T ss_pred hcCCCHHHHHHhhCHHHHHHHHHHc-------CCCCCCEEEEc-H-HHHHHHH--HhcCCCEEEEEcCCCcC---CCCeE
Confidence 6778999999999999999999986 89999999875 2 2333322 347899999999864 4 46889
Q ss_pred EEeChhhHhcc------CCCeEEEecccCCCeEEEEEEECC---EEEEE-EEecCCCCcccccccCCceeeecCcccccc
Q 024006 117 LAYDQYSLKKL------EPPLVLQEFVNHGGVLFKVYIVGE---AIKVV-RRFSLPDVTKQDLSTSAGVFRFPRVSCAAA 186 (274)
Q Consensus 117 iv~~~~~l~~l------~~p~vvQefI~h~g~~~KV~VIG~---~v~~~-~R~S~p~~~~~~~~~~~g~~~~~~~~~~~~ 186 (274)
++.+.+++.+. +.++++||||+. |+++.|.++++ ++... .... +. ..+.++..
T Consensus 145 ~v~~~~el~~~~~~~~~~~~~lvEe~i~~-g~e~sv~~~~d~~G~~~~~~~~~~--------~~-~~~~~~~~------- 207 (365)
T 2z04_A 145 RIKKLEDANQVVKNHDKEESFIIEEFVKF-EAEISCIGVRDREGKTYFYPQPFN--------KH-EEGILIYN------- 207 (365)
T ss_dssp --------------------CEEEECCCC-SEEEEEEEEECTTCCEEECCEEEE--------EE-ETTEEEEE-------
T ss_pred EECCHHHHHHHHHHhccCCCEEEEccCCC-CEEEEEEEEECCCCCEEEECCEEE--------EE-eCCEeEEE-------
Confidence 99999887653 468999999964 89999999963 44321 1110 00 11222210
Q ss_pred cCCcCCCCccccCCCChHHHHHHHHHHHHHhCCc-eeEEeEEEeCCCCCeEEEEeccCCCCCCCcc
Q 024006 187 SADDADLDPCVAELPPRPLLERLAKELRRQLGLR-LFNLDIIREHGTRDQFYVIDINYFPGYGKMP 251 (274)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~lA~~~~~~lGl~-l~G~Dvi~~~~~g~~~~ViDVN~fPg~~g~~ 251 (274)
..|. .+ .++++++|.++.++||+. ++++|++++. +| +++++|+|.-||..+..
T Consensus 208 ------~~p~--~~--~~~~~~~~~~~~~~lg~~G~~~vd~~~~~-~g-~~~~iEiN~R~~~~~~~ 261 (365)
T 2z04_A 208 ------YVPY--AK--LKEAEEITKRLMELLDIVGVFTVEFFLLK-DG-RVLINEFAPRVHNTGHW 261 (365)
T ss_dssp ------EEEE--EC--CHHHHHHHHHHHHHTTCCEEEEEEEEECT-TS-CEEEEEEESSCCGGGTT
T ss_pred ------ECCH--hH--HHHHHHHHHHHHHHcCCEEEEEEEEEEeC-CC-cEEEEEeccCcCCCceE
Confidence 0010 01 357899999999999997 7789999975 45 58999999999876543
No 39
>2dwc_A PH0318, 433AA long hypothetical phosphoribosylglycinamide transferase; purine ribonucleotide biosynthesis; HET: ADP; 1.70A {Pyrococcus horikoshii} PDB: 2czg_A*
Probab=99.60 E-value=5.6e-15 Score=140.11 Aligned_cols=179 Identities=13% Similarity=0.156 Sum_probs=117.8
Q ss_pred CcEEeCcHHHHHHhcCHHHHHHHH-HhccccCCCCCccCCCEEEEecCCCChhHHHHhcCCCCcEEEeeCcCCCCcccee
Q 024006 36 EVTVLDPPYAIQHLHNRQSMLQCV-ADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHE 114 (274)
Q Consensus 36 ~v~Vidp~~ai~~l~dR~~~~~~L-~~~~~~~~~~~I~~P~~~~~~~~~~~~~~~l~~~~l~~P~VvKp~~a~Gs~~sh~ 114 (274)
++++.+++++++.+.||..+.+.| ++. ||++|++..+. +.+++.+.+. .++||+|+||..++ +|.+
T Consensus 105 gi~~~~~~~~~~~~~dK~~~k~~l~~~~-------gip~p~~~~~~-~~~~~~~~~~--~~g~P~vvKp~~g~---gg~G 171 (433)
T 2dwc_A 105 GYFVVPNARATWIAMHRERLRETLVKEA-------KVPTSRYMYAT-TLDELYEACE--KIGYPCHTKAIMSS---SGKG 171 (433)
T ss_dssp TCCBSSCHHHHHHHHCHHHHHHHHHHTS-------CCCCCCEEEES-SHHHHHHHHH--HHCSSEEEEECCC--------
T ss_pred CCeeCCCHHHHHHhhCHHHHHHHHHHhc-------CCCCCCeeEeC-CHHHHHHHHH--hcCCCEEEEECCCc---CCCC
Confidence 556789999999999999999998 675 89999999885 2223333332 36899999998753 4778
Q ss_pred eEEEeChhhHhcc-----------CCCeEEEecccCCCeEEEEEEEC-----CEEEEEEEecCCCCcccccccCCceeee
Q 024006 115 LSLAYDQYSLKKL-----------EPPLVLQEFVNHGGVLFKVYIVG-----EAIKVVRRFSLPDVTKQDLSTSAGVFRF 178 (274)
Q Consensus 115 m~iv~~~~~l~~l-----------~~p~vvQefI~h~g~~~KV~VIG-----~~v~~~~R~S~p~~~~~~~~~~~g~~~~ 178 (274)
+.++.+++++.+. +.++++||||+. |.++.|.+++ +++....-....+. . ..+.+.
T Consensus 172 v~~v~~~~el~~~~~~~~~~~~~~~~~~lvEe~i~~-g~E~sv~~~~~~~~~G~~~~~~~~~~~~~-----~-~~~~~~- 243 (433)
T 2dwc_A 172 SYFVKGPEDIPKAWEEAKTKARGSAEKIIVEEHIDF-DVEVTELAVRHFDENGEIVTTFPKPVGHY-----Q-IDGDYH- 243 (433)
T ss_dssp -EEECSGGGHHHHHHC---------CCEEEEECCCC-SEEEEECCEEEECTTSCEEEEEECCEEEE-----E-SSSSEE-
T ss_pred eEEECCHHHHHHHHHHHHhhcccCCCCEEEEccCCC-CeeEEEEEEecccCCCCEeEEEecccceE-----E-EcCEEE-
Confidence 9999999887542 368999999964 8999998874 33211111110000 0 011111
Q ss_pred cCcccccccCCcCCCCccccCCCChHHHHHHHHHHHHHhCCc-eeEEeEEEeCCCCCeEEEEeccCCCCCCCc
Q 024006 179 PRVSCAAASADDADLDPCVAELPPRPLLERLAKELRRQLGLR-LFNLDIIREHGTRDQFYVIDINYFPGYGKM 250 (274)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lA~~~~~~lGl~-l~G~Dvi~~~~~g~~~~ViDVN~fPg~~g~ 250 (274)
.... +..++++. .++++++|.++.++||+. ++++|++++.+ ++|++|+|.-||..+.
T Consensus 244 -~~~~------p~~l~~~~-----~~~i~~~a~~~~~~lg~~G~~~ve~~~~~~---~~~viEiN~R~~~~~~ 301 (433)
T 2dwc_A 244 -ASWQ------PAEISEKA-----EREVYRIAKRITDVLGGLGIFGVEMFVKGD---KVWANEVSPRPHDTGM 301 (433)
T ss_dssp -EEEE------SCCCCHHH-----HHHHHHHHHHHHHHHCSSEECEEEEEEETT---EEEEEEEESSCCGGGG
T ss_pred -EEEc------CCCCCHHH-----HHHHHHHHHHHHHHcCCeeEEEEEEEEeCC---cEEEEEEeCCcCCCcc
Confidence 0000 11122211 356899999999999994 77899999852 5899999999997654
No 40
>3ouz_A Biotin carboxylase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta fold, cytosol, LIG; HET: MSE ADP SRT TLA; 1.90A {Campylobacter jejuni subsp} PDB: 3ouu_A*
Probab=99.58 E-value=3e-14 Score=135.76 Aligned_cols=182 Identities=14% Similarity=0.217 Sum_probs=123.8
Q ss_pred HHHHhCCCcEEe-CcHHHHHHhcCHHHHHHHHHhccccCCCCCccCCCEE--EEecCCCChhHHHHhcCCCCcEEEeeCc
Q 024006 29 EYRQTHPEVTVL-DPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQL--VIERDASSIPDVVLKAGLTLPLVAKPLV 105 (274)
Q Consensus 29 ~y~~~~P~v~Vi-dp~~ai~~l~dR~~~~~~L~~~~~~~~~~~I~~P~~~--~~~~~~~~~~~~l~~~~l~~P~VvKp~~ 105 (274)
+..++ -+++++ .++++++.+.||..+.+.|++. ||++|++. .+. +.+++.+.. ..++||+|+||..
T Consensus 97 ~~~~~-~g~~~~g~~~~~~~~~~dK~~~~~~l~~~-------Gip~p~~~~~~~~-~~~e~~~~~--~~~g~PvvvKp~~ 165 (446)
T 3ouz_A 97 EICAK-HNIKFIGPSVEAMNLMSDKSKAKQVMQRA-------GVPVIPGSDGALA-GAEAAKKLA--KEIGYPVILKAAA 165 (446)
T ss_dssp HHHHH-TTCEESSCCHHHHHHHHSHHHHHHHHHHT-------TCCBCSBCSSSCC-SHHHHHHHH--HHHCSSEEEEETT
T ss_pred HHHHH-CCCceECcCHHHHHHhCCHHHHHHHHHHc-------CCCcCCCcccCCC-CHHHHHHHH--HHhCCCEEEEECC
Confidence 33444 367877 8899999999999999999986 89999986 443 222333323 3478999999998
Q ss_pred CCCCccceeeEEEeChhhHhcc-------------CCCeEEEecccCCCeEEEEEEECCE---EEEE-EEe-cCCCCccc
Q 024006 106 ADGSAKSHELSLAYDQYSLKKL-------------EPPLVLQEFVNHGGVLFKVYIVGEA---IKVV-RRF-SLPDVTKQ 167 (274)
Q Consensus 106 a~Gs~~sh~m~iv~~~~~l~~l-------------~~p~vvQefI~h~g~~~KV~VIG~~---v~~~-~R~-S~p~~~~~ 167 (274)
|+ ++.+|.++.+++++.+. +.++++||||+ +++++.|.++++. ++.. .|. +..
T Consensus 166 g~---gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEe~i~-g~~e~~v~v~~d~~g~~~~~~~~~~~~~----- 236 (446)
T 3ouz_A 166 GG---GGRGMRVVENEKDLEKAYWSAESEAMTAFGDGTMYMEKYIQ-NPRHIEVQVIGDSFGNVIHVGERDCSMQ----- 236 (446)
T ss_dssp CC---TTCSEEEECSGGGHHHHHHHHHHHHHHHHSCCCEEEEECCS-SCEEEEEEEEECTTSCEEEEEEEEEEEE-----
T ss_pred CC---CCCCEEEECCHHHHHHHHHHHHHHHHHhcCCCCEEEEeCCC-CCcEEEEEEEEcCCCCEEEEeeceeeee-----
Confidence 64 46789999999887642 57899999996 2389999999653 3332 222 110
Q ss_pred ccccCCceeeecCcccccccCCcCCCCccccCCCChHHHHHHHHHHHHHhCCce-eEEeEEEeCCCCCeEEEEeccCCCC
Q 024006 168 DLSTSAGVFRFPRVSCAAASADDADLDPCVAELPPRPLLERLAKELRRQLGLRL-FNLDIIREHGTRDQFYVIDINYFPG 246 (274)
Q Consensus 168 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lA~~~~~~lGl~l-~G~Dvi~~~~~g~~~~ViDVN~fPg 246 (274)
... ... ........++++. .+++.++|.++.++||+.- +++|++++. +| ++|++|||.-||
T Consensus 237 ---~~~------~~~--~~~~p~~~l~~~~-----~~~l~~~a~~~~~~lg~~G~~~ve~~~~~-~g-~~~~iEiNpR~~ 298 (446)
T 3ouz_A 237 ---RRH------QKL--IEESPAILLDEKT-----RTRLHETAIKAAKAIGYEGAGTFEFLVDK-NL-DFYFIEMNTRLQ 298 (446)
T ss_dssp ---ETT------EEE--EEEESCTTSCHHH-----HHHHHHHHHHHHHHTTCCEEEEEEEEECT-TC-CEEEEEEESSCC
T ss_pred ---ecC------ceE--EEECCCCCCCHHH-----HHHHHHHHHHHHHHcCCCCceEEEEEEeC-CC-CEEEEEeECCCC
Confidence 000 000 0000000122111 3578899999999999984 559999986 34 699999999997
Q ss_pred CC
Q 024006 247 YG 248 (274)
Q Consensus 247 ~~ 248 (274)
-.
T Consensus 299 g~ 300 (446)
T 3ouz_A 299 VE 300 (446)
T ss_dssp TT
T ss_pred Cc
Confidence 43
No 41
>1ulz_A Pyruvate carboxylase N-terminal domain; biotin carboxylase; 2.20A {Aquifex aeolicus} SCOP: b.84.2.1 c.30.1.1 d.142.1.2
Probab=99.57 E-value=4e-14 Score=134.89 Aligned_cols=182 Identities=12% Similarity=0.189 Sum_probs=122.4
Q ss_pred HHHHhCCCcEEe-CcHHHHHHhcCHHHHHHHHHhccccCCCCCccCCCEE--EEecCCCChhHHHHhcCCCCcEEEeeCc
Q 024006 29 EYRQTHPEVTVL-DPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQL--VIERDASSIPDVVLKAGLTLPLVAKPLV 105 (274)
Q Consensus 29 ~y~~~~P~v~Vi-dp~~ai~~l~dR~~~~~~L~~~~~~~~~~~I~~P~~~--~~~~~~~~~~~~l~~~~l~~P~VvKp~~ 105 (274)
+..+. -+++++ +++++++.+.||..+.+.|++. ||++|++. .++ +.+++.+.+. .++||+|+||..
T Consensus 92 ~~~~~-~gi~~~g~~~~~~~~~~dK~~~k~~l~~~-------gip~p~~~~~~~~-~~~~~~~~~~--~~g~PvvvKp~~ 160 (451)
T 1ulz_A 92 KMCEE-AGITFIGPHWKVIELMGDKARSKEVMKKA-------GVPVVPGSDGVLK-SLEEAKALAR--EIGYPVLLKATA 160 (451)
T ss_dssp HHHHH-TTCEESSSCHHHHHHHHSHHHHHHHHHHT-------TCCBCCBCSSSCC-CHHHHHHHHH--HHCSSEEEEECS
T ss_pred HHHHH-CCCeEECcCHHHHHHhcCHHHHHHHHHHc-------CCCCCCCcccccC-CHHHHHHHHH--HcCCCEEEEECC
Confidence 33443 367776 6799999999999999999986 89999986 443 2223333332 368999999998
Q ss_pred CCCCccceeeEEEeChhhHhcc-------------CCCeEEEecccCCCeEEEEEEECC---EEEEE-EEecCCCCcccc
Q 024006 106 ADGSAKSHELSLAYDQYSLKKL-------------EPPLVLQEFVNHGGVLFKVYIVGE---AIKVV-RRFSLPDVTKQD 168 (274)
Q Consensus 106 a~Gs~~sh~m~iv~~~~~l~~l-------------~~p~vvQefI~h~g~~~KV~VIG~---~v~~~-~R~S~p~~~~~~ 168 (274)
++ +|.+|.++.+++++.+. +.++++||||+ +++++.|.++++ ++... .|.. + +
T Consensus 161 g~---gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEe~i~-g~~e~~v~v~~~~~G~~~~~~~~~~-~-~---- 230 (451)
T 1ulz_A 161 GG---GGRGIRICRNEEELVKNYEQASREAEKAFGRGDLLLEKFIE-NPKHIEYQVLGDKHGNVIHLGERDC-S-I---- 230 (451)
T ss_dssp SS---SCCSCEEESSHHHHHHHHHHHHHHHHHTTSCCCEEEEECCC-SCEEEEEEEEECTTSCEEEEEEEEE-E-E----
T ss_pred CC---CCccEEEeCCHHHHHHHHHHHHHHHHHhcCCCeEEEEEccc-CCeEEEEEEEEcCCCCEEEEeeeec-c-c----
Confidence 64 46789999999887541 46899999996 248999998874 34332 2221 0 0
Q ss_pred cccCCceeeecCcccccccCCcC-CCCccccCCCChHHHHHHHHHHHHHhCCc-eeEEeEEEeCCCCCeEEEEeccCCCC
Q 024006 169 LSTSAGVFRFPRVSCAAASADDA-DLDPCVAELPPRPLLERLAKELRRQLGLR-LFNLDIIREHGTRDQFYVIDINYFPG 246 (274)
Q Consensus 169 ~~~~~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~lA~~~~~~lGl~-l~G~Dvi~~~~~g~~~~ViDVN~fPg 246 (274)
..... .... . .+. .++++. .++++++|.++.++||+. ++++|++++. +| +++++|+|.-||
T Consensus 231 -~~~~~-~~~~-----~---~P~~~l~~~~-----~~~i~~~a~~~~~~lg~~G~~~ve~~~~~-~g-~~~viEiN~R~~ 293 (451)
T 1ulz_A 231 -QRRNQ-KLVE-----I---APSLILTPEK-----REYYGNIVTKAAKEIGYYNAGTMEFIADQ-EG-NLYFIEMNTRIQ 293 (451)
T ss_dssp -EETTE-EEEE-----E---ESCSSCCHHH-----HHHHHHHHHHHHHHTTCCEEEEEEEEECT-TC-CEEEEEEECSCC
T ss_pred -ccccc-ccee-----E---CCcccCCHHH-----HHHHHHHHHHHHHHcCCCcceEEEEEEeC-CC-CEEEEEeeCCCC
Confidence 00000 0000 0 001 122111 356889999999999998 4569999975 35 589999999887
Q ss_pred CC
Q 024006 247 YG 248 (274)
Q Consensus 247 ~~ 248 (274)
-.
T Consensus 294 ~~ 295 (451)
T 1ulz_A 294 VE 295 (451)
T ss_dssp TT
T ss_pred cc
Confidence 44
No 42
>2ip4_A PURD, phosphoribosylamine--glycine ligase; GAR synthetase, purine nucleotid structural genomics, NPPSFA; 2.80A {Thermus thermophilus}
Probab=99.57 E-value=3.7e-14 Score=133.80 Aligned_cols=181 Identities=15% Similarity=0.110 Sum_probs=116.3
Q ss_pred CcEEe-CcHHHHHHhcCHHHHHHHHHhccccCCCCCccCCCEEEEecCCCChhHHHHhcCCCCcEEEeeCcCCCCcccee
Q 024006 36 EVTVL-DPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHE 114 (274)
Q Consensus 36 ~v~Vi-dp~~ai~~l~dR~~~~~~L~~~~~~~~~~~I~~P~~~~~~~~~~~~~~~l~~~~l~~P~VvKp~~a~Gs~~sh~ 114 (274)
+++++ ++.++++.+.||..+.+.|++. ||++|++..++ +.+++.+.+. .++||+|+||..++ +|.+
T Consensus 85 gi~~~g~~~~~~~~~~dK~~~~~~l~~~-------gip~p~~~~~~-~~~~~~~~~~--~~~~P~vvKp~~~~---gg~G 151 (417)
T 2ip4_A 85 GLLLFGPTQKAAMIEGSKAFAKGLMERY-------GIPTARYRVFR-EPLEALAYLE--EVGVPVVVKDSGLA---AGKG 151 (417)
T ss_dssp TCCEESCCHHHHHHHHCHHHHHHHHHHT-------CCCBCCEEEES-SHHHHHHHHH--HHCSSEEEECTTSC---SSTT
T ss_pred CCCEECccHHHHHHHcCHHHHHHHHHHc-------CCCCCCeeeeC-CHHHHHHHHH--HcCCCEEEEECCCC---CCCC
Confidence 56777 8999999999999999999986 89999998885 3223333332 36899999998864 4678
Q ss_pred eEEEeChhhHhcc---------CCCeEEEecccCCCeEEEEEEEC--CEEEEE--EEecCCCCcccccccCCceeeecCc
Q 024006 115 LSLAYDQYSLKKL---------EPPLVLQEFVNHGGVLFKVYIVG--EAIKVV--RRFSLPDVTKQDLSTSAGVFRFPRV 181 (274)
Q Consensus 115 m~iv~~~~~l~~l---------~~p~vvQefI~h~g~~~KV~VIG--~~v~~~--~R~S~p~~~~~~~~~~~g~~~~~~~ 181 (274)
|.++.+++++.+. +.++++||||+ |.++.|.+++ +.++.. .|..-+.. + +....+..
T Consensus 152 v~~v~~~~el~~~~~~~~~~~~~~~~lvEe~i~--g~E~sv~~~~~G~~~~~~~~~~~~~~~~---~-----~~~~~~~g 221 (417)
T 2ip4_A 152 VTVAFDLHQAKQAVANILNRAEGGEVVVEEYLE--GEEATVLALTDGETILPLLPSQDHKRLL---D-----GDQGPMTG 221 (417)
T ss_dssp CEEESCHHHHHHHHHHHTTSSSCCCEEEEECCC--SCEEEEEEEESSSCEEECCCBEECCEEE---T-----TTEEEECS
T ss_pred EEEeCCHHHHHHHHHHHHhhccCCeEEEEECcc--CcEEEEEEEEeCCEEEEcchheechhhc---c-----CCCCCcCC
Confidence 9999999887642 26899999996 8899999884 334321 12211000 0 00000000
Q ss_pred ccccccCCcCCCCccccCCCChHHH-HHHHHHHHHHh---CCc---eeEEeEEEeCCCCCeEEEEeccCCCCCCC
Q 024006 182 SCAAASADDADLDPCVAELPPRPLL-ERLAKELRRQL---GLR---LFNLDIIREHGTRDQFYVIDINYFPGYGK 249 (274)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~lA~~~~~~l---Gl~---l~G~Dvi~~~~~g~~~~ViDVN~fPg~~g 249 (274)
.. +.. .+..++++. .+++ ++++.++.++| |+. ++++|++++. +| ++++|+|.-||-.+
T Consensus 222 ~~-~~~-~p~~l~~~~-----~~~~~~~~~~~~~~~l~~~g~~~~G~~~ve~~~~~-~g--~~viEiN~R~g~~~ 286 (417)
T 2ip4_A 222 GM-GAV-APYPMDEAT-----LRRVEEEILGPLVRGLRAEGVVYRGVVYAGLMLTR-EG--PKVLEFNARFGDPE 286 (417)
T ss_dssp CS-EEE-ESCCCCHHH-----HHHHHHHTHHHHHHHHHHTTCCCCEEEEEEEEECS-SC--EEEEEEESSCCTTH
T ss_pred CC-eee-eCCCCCHHH-----HHHHHHHHHHHHHHHHHHcCCCceEEEEEEEEEeC-CC--eEEEEEecCCCCcH
Confidence 00 000 011122111 2233 55677777776 555 4569999975 44 89999999999543
No 43
>4ffl_A PYLC; amino acid, biosynthesis of pyrrolysine, isopeptide bond for ATP-grAsp fold, ligase, ATP-binding, L-lysine and 3R-methyl ornithine; HET: LYS ADP ATP; 1.50A {Methanosarcina barkeri} PDB: 4ffm_A* 4ffn_A* 4ffo_A* 4ffp_A* 4ffr_A*
Probab=99.57 E-value=2.8e-14 Score=132.18 Aligned_cols=161 Identities=23% Similarity=0.394 Sum_probs=113.1
Q ss_pred HHHHhCCCcEEeCcHHHHHHhcCHHHHHHHHHhccccCCCCCccCCCEEEEecCCCChhHHHHhcCCCCcEEEeeCcCCC
Q 024006 29 EYRQTHPEVTVLDPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADG 108 (274)
Q Consensus 29 ~y~~~~P~v~Vidp~~ai~~l~dR~~~~~~L~~~~~~~~~~~I~~P~~~~~~~~~~~~~~~l~~~~l~~P~VvKp~~a~G 108 (274)
....+.-++++..++++++.++||..+-+.|+++ |||+|.+ ..++||+|+||..++
T Consensus 81 ~~~~~~~~~~~g~~~~a~~~~~dK~~~k~~l~~~-------gip~~~~----------------~~ig~P~vvKp~~g~- 136 (363)
T 4ffl_A 81 NSIKEKFSCPVLFDFEAYRISRDKKKSKDYFKSI-------GVPTPQD----------------RPSKPPYFVKPPCES- 136 (363)
T ss_dssp HHHGGGCSSCBCCCHHHHHHHTSHHHHHHHHHHT-------TCCCCCB----------------SCSSSCEEEECSSCC-
T ss_pred HHHHHHCCCccCCCHHHHHHhhCHHHHHHHHHhc-------CCCCCCc----------------eecCCCEEEEECCCC-
Confidence 3334445677889999999999999999999986 8899864 136899999998864
Q ss_pred CccceeeEEEeChhhHhccCCCeEEEecccCCCeEEEEEEECCE--EEEE--EEecCCCCcccccccCCceeeecCcccc
Q 024006 109 SAKSHELSLAYDQYSLKKLEPPLVLQEFVNHGGVLFKVYIVGEA--IKVV--RRFSLPDVTKQDLSTSAGVFRFPRVSCA 184 (274)
Q Consensus 109 s~~sh~m~iv~~~~~l~~l~~p~vvQefI~h~g~~~KV~VIG~~--v~~~--~R~S~p~~~~~~~~~~~g~~~~~~~~~~ 184 (274)
++.+|.++.+.+++.....++++|||| .|..+-|.+++|. .... .+...++ ...+
T Consensus 137 --g~~gv~~v~~~~~~~~~~~~~~~ee~i--~g~e~sv~~~~d~~~~~~~~~~~~~~~~----------------~~~~- 195 (363)
T 4ffl_A 137 --SSVGARIIYDDKDLEGLEPDTLVEEYV--EGEVVSLEVVGDGSHFAVVKETLVHIDE----------------TYDC- 195 (363)
T ss_dssp --TTTTCEEEC------CCCTTCEEEECC--CSEEEEEEEEEESSCEEECCCEEEEECT----------------TSCE-
T ss_pred --CCcCeEEeccHHHhhhhccchhhhhhc--cCcEEEEEEEEECCeEEEEEEEEeccCC----------------cccc-
Confidence 467899999999999999999999999 5899999888653 2211 1111000 0000
Q ss_pred cccCCcCCCCccccCCCChHHHHHHHHHHHHHhCCc-eeEEeEEEeCCCCCeEEEEeccC-CCCC
Q 024006 185 AASADDADLDPCVAELPPRPLLERLAKELRRQLGLR-LFNLDIIREHGTRDQFYVIDINY-FPGY 247 (274)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~lA~~~~~~lGl~-l~G~Dvi~~~~~g~~~~ViDVN~-fPg~ 247 (274)
+ . ..+.+..++++++|.++.++||+. ++++|+++++ + .+||+|+|. |||.
T Consensus 196 ~------~----~~p~~~~~~~~~~a~~~~~~l~~~G~~~vef~~~~-~--~~~viEiN~R~~g~ 247 (363)
T 4ffl_A 196 H------M----VTPLPANPLFRQISHDLAANLPLKGIMDVEAIFGP-K--GLRVIEIDARFPSQ 247 (363)
T ss_dssp E------E----EEECCCCHHHHHHHHHHHHTTTCEEEEEEEEEEET-T--EEEEEEEECSCCSS
T ss_pred e------e----ecchhHHHHHHHHHHHHHHhCCccceeeeeeEEeC-C--eEEEEEEeCCCCCC
Confidence 0 0 001122467899999999999998 6679999985 2 589999999 7884
No 44
>2yw2_A Phosphoribosylamine--glycine ligase; glycinamide ribonucleotide synthetase, GAR synthetase, ATP B purine nucleotide biosynthetic pathway; HET: ATP; 1.80A {Aquifex aeolicus} PDB: 2yya_A
Probab=99.56 E-value=5.2e-14 Score=132.97 Aligned_cols=190 Identities=12% Similarity=0.074 Sum_probs=120.4
Q ss_pred HHHHHHHhCCCcEEe-CcHHHHHHhcCHHHHHHHHHhccccCCCCCccCCCEEEEecCCCChhHHHHhcCCCCcEEEeeC
Q 024006 26 ILEEYRQTHPEVTVL-DPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPL 104 (274)
Q Consensus 26 ~l~~y~~~~P~v~Vi-dp~~ai~~l~dR~~~~~~L~~~~~~~~~~~I~~P~~~~~~~~~~~~~~~l~~~~l~~P~VvKp~ 104 (274)
.+.+..+. -+++++ +++++++.+.||..+.+.|++. ||++|++..++ +.+++.+.+. .++||+|+||.
T Consensus 77 ~~~~~l~~-~gi~~~g~~~~~~~~~~dK~~~k~~l~~~-------gip~p~~~~~~-~~~~~~~~~~--~~~~PvvvKp~ 145 (424)
T 2yw2_A 77 GIVDEFEK-RGLKIFGPNKEAAKLEGSKAFAKTFMKKY-------GIPTARYEVFT-DFEKAKEYVE--KVGAPIVVKAD 145 (424)
T ss_dssp THHHHHHH-TTCCEESCCTTTTHHHHCHHHHHHHHHHT-------TCCBCCEEEES-CHHHHHHHHH--HHCSSEEEEES
T ss_pred HHHHHHHH-CCCcEECcCHHHHHHHhCHHHHHHHHHHc-------CCCCCCeEEEC-CHHHHHHHHH--HcCCcEEEEeC
Confidence 34444444 367777 8899999999999999999986 89999998885 3223333332 36899999998
Q ss_pred cCCCCccceeeEEEeChhhHhcc-------------CCCeEEEecccCCCeEEEEEEE--CCEEEEE--EEecCCCCccc
Q 024006 105 VADGSAKSHELSLAYDQYSLKKL-------------EPPLVLQEFVNHGGVLFKVYIV--GEAIKVV--RRFSLPDVTKQ 167 (274)
Q Consensus 105 ~a~Gs~~sh~m~iv~~~~~l~~l-------------~~p~vvQefI~h~g~~~KV~VI--G~~v~~~--~R~S~p~~~~~ 167 (274)
.++ +|.+|.++.+.+++.+. +.++++||||+ |.++.|.++ |+.++.. .|..-+.+
T Consensus 146 ~g~---gg~Gv~~v~~~~el~~~~~~~~~~~~~g~~~~~~lvEe~i~--g~E~sv~~~~~G~~~~~~~~~~~~~~~~--- 217 (424)
T 2yw2_A 146 GLA---AGKGAVVCETVEKAIETLDRFLNKKIFGKSSERVVIEEFLE--GEEASYIVMINGDRYVPLPTSQDHKRLL--- 217 (424)
T ss_dssp SCC---TTCSEEEESSHHHHHHHHHHHHTSCTTGGGGSSEEEEECCC--SEEEEEEEEEETTEEEECCCBEECCEEE---
T ss_pred CCC---CCCCEEEECCHHHHHHHHHHHHhhhhccCCCCeEEEEECCC--CcEEEEEEEEcCCEEEeecceeeccccc---
Confidence 864 46789999999887642 25899999996 889998887 4444321 12110000
Q ss_pred ccccCCceeeecCcccccccCCcCC-CCccccCCCChHHH-HHHHHHHHHHh---CCce---eEEeEEEeCCCCCeEEEE
Q 024006 168 DLSTSAGVFRFPRVSCAAASADDAD-LDPCVAELPPRPLL-ERLAKELRRQL---GLRL---FNLDIIREHGTRDQFYVI 239 (274)
Q Consensus 168 ~~~~~~g~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~~lA~~~~~~l---Gl~l---~G~Dvi~~~~~g~~~~Vi 239 (274)
+ +....+.... +.. .+.. ++++. .+++ ++++.++.++| |+.+ +++|++++. +| ++++
T Consensus 218 ~-----~~~~~~~g~~-~~~-~p~~~l~~~~-----~~~~~~~~~~~~~~~l~~~g~~~~G~~~ve~~~~~-~g--~~vi 282 (424)
T 2yw2_A 218 D-----EDKGPNTGGM-GAY-SPTPVINEEV-----EKRIREEIVERVIKGLKEEGIYYRGFLYAGLMITK-EG--PKVL 282 (424)
T ss_dssp T-----TTEEEECSCS-EEE-ESCTTSCHHH-----HHHHHHHTHHHHHHHHHHHTCCCEEEEEEEEEEET-TE--EEEE
T ss_pred c-----CCCCCCCCCC-eeE-CCCccCCHHH-----HHHHHHHHHHHHHHHHHHcCCCceeEEEEEEEEeC-CC--cEEE
Confidence 0 0000000000 000 0111 22111 2233 46777777776 6654 459999985 34 8999
Q ss_pred eccCCCCCCC
Q 024006 240 DINYFPGYGK 249 (274)
Q Consensus 240 DVN~fPg~~g 249 (274)
|+|.-||-.+
T Consensus 283 EiN~R~g~~~ 292 (424)
T 2yw2_A 283 EFNVRLGDPE 292 (424)
T ss_dssp EEESSCCTTT
T ss_pred EEecCCCCcH
Confidence 9999999544
No 45
>1vkz_A Phosphoribosylamine--glycine ligase; TM1250, structural GENO JCSG, protein structure initiative, PSI, joint center for S genomics; 2.30A {Thermotoga maritima} SCOP: b.84.2.1 c.30.1.1 d.142.1.2
Probab=99.56 E-value=6.3e-14 Score=132.45 Aligned_cols=180 Identities=12% Similarity=0.119 Sum_probs=118.7
Q ss_pred EEeCcHHHHHHhcCHHHHHHHHHhccccCCCCCccCCCEEEEecCCCChhHHHHhcCCCCcEEEeeCcCCCCccceeeEE
Q 024006 38 TVLDPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSL 117 (274)
Q Consensus 38 ~Vidp~~ai~~l~dR~~~~~~L~~~~~~~~~~~I~~P~~~~~~~~~~~~~~~l~~~~l~~P~VvKp~~a~Gs~~sh~m~i 117 (274)
++-.++++++.+.||..+.+.|++. ||++|++..++ +.+++.+.+ ..++||+|+||..++ +|.+|.+
T Consensus 93 ~~g~~~~~~~~~~dK~~~k~~l~~~-------gip~p~~~~~~-~~~e~~~~~--~~~g~PvvvKp~~~~---gg~Gv~~ 159 (412)
T 1vkz_A 93 VFGPVKEVARLEGSKVYAKRFMKKY-------GIRTARFEVAE-TPEELREKI--KKFSPPYVIKADGLA---RGKGVLI 159 (412)
T ss_dssp BSSCCHHHHHHHHCHHHHHHHHHHT-------TCCCCCEEEES-SHHHHHHHH--TTSCSSEEEEESSCC---SSCCEEE
T ss_pred hhCCCHHHHHHhcCHHHHHHHHHHc-------CCCCCCEEEEC-CHHHHHHHH--HhcCCCEEEEeCCCC---CCCCEEE
Confidence 4568999999999999999999996 89999998885 322333322 358999999999864 4678999
Q ss_pred EeChhhHhcc-----------C--CCeEEEecccCCCeEEEEEEE--CCEEEEEEEecCCCCcccccccCCceeeecCcc
Q 024006 118 AYDQYSLKKL-----------E--PPLVLQEFVNHGGVLFKVYIV--GEAIKVVRRFSLPDVTKQDLSTSAGVFRFPRVS 182 (274)
Q Consensus 118 v~~~~~l~~l-----------~--~p~vvQefI~h~g~~~KV~VI--G~~v~~~~R~S~p~~~~~~~~~~~g~~~~~~~~ 182 (274)
+.+++++.+. . .++++||||+ |+++.|.++ |+.+..... ..... ..+.+....
T Consensus 160 v~~~~el~~a~~~~~~~~~~~g~~~~vlvEe~i~--G~E~sv~~~~dg~~~~~~~~-------~~~~~---~~~~~~~~~ 227 (412)
T 1vkz_A 160 LDSKEETIEKGSKLIIGELIKGVKGPVVIDEFLA--GNELSAMAVVNGRNFVILPF-------VRDYK---RLMDGDRGP 227 (412)
T ss_dssp ESSHHHHHHHHHHHHHTSSSTTCCSCEEEEECCC--SEEEEEEEEEETTEEEECCC-------CEECC---EEETTTEEE
T ss_pred ECCHHHHHHHHHHHHhhccccCCCCeEEEEECCc--CcEEEEEEEECCCEEEEeee-------eEeee---eccCCCCCC
Confidence 9999887541 1 3899999996 899999988 333322110 00000 000000000
Q ss_pred cccccC--CcCCCCccccCCCChHHHHHHHHHHHHHh-----CC-ceeEEeEEEeCCCCCeEEEEeccCCCCCCCc
Q 024006 183 CAAASA--DDADLDPCVAELPPRPLLERLAKELRRQL-----GL-RLFNLDIIREHGTRDQFYVIDINYFPGYGKM 250 (274)
Q Consensus 183 ~~~~~~--~~~~~~~~~~~~~~~~~~~~lA~~~~~~l-----Gl-~l~G~Dvi~~~~~g~~~~ViDVN~fPg~~g~ 250 (274)
..+... .+..++++. .++++++|.++.++| +. .++++|++++. +| +||+|+|.-||-.+.
T Consensus 228 ~~g~~~~~~P~~l~~~~-----~~~i~~~a~~~~~~l~~~g~~~~G~~~ve~~~~~-~g--~~viEiN~R~g~~~~ 295 (412)
T 1vkz_A 228 NTGGMGSWGPVEIPSDT-----IKKIEELFDKTLWGVEKEGYAYRGFLYLGLMLHD-GD--PYILEYNVRLGDPET 295 (412)
T ss_dssp ECSCSEEEECCCCCHHH-----HHHHHHHHHHHHHHHHHTTCCCEEEEEEEEEEET-TE--EEEEEEESSCCTTHH
T ss_pred CCCCceEEECCCCCHHH-----HHHHHHHHHHHHHHHHhcCCCcEEEEEEEEEEEC-CC--cEEEEEecCCCCCcc
Confidence 000000 011122221 346789999999999 44 35569999985 34 899999999986654
No 46
>3lp8_A Phosphoribosylamine-glycine ligase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography; 2.15A {Ehrlichia chaffeensis}
Probab=99.56 E-value=1.2e-13 Score=132.27 Aligned_cols=209 Identities=10% Similarity=0.048 Sum_probs=132.0
Q ss_pred HHHHHHHhCCCcEEe-CcHHHHHHhcCHHHHHHHHHhccccCCCCCccCCCEEEEecCCCChhHHHHhcCCCCcEEEeeC
Q 024006 26 ILEEYRQTHPEVTVL-DPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPL 104 (274)
Q Consensus 26 ~l~~y~~~~P~v~Vi-dp~~ai~~l~dR~~~~~~L~~~~~~~~~~~I~~P~~~~~~~~~~~~~~~l~~~~l~~P~VvKp~ 104 (274)
.+.+..++ -+++++ .+.++++.+.||..+.+.|++. |||+|++..++ +.++..+.+. .++||+|+||.
T Consensus 98 ~~~~~l~~-~Gi~~~Gp~~~a~~~~~dK~~~k~~l~~~-------GIp~p~~~~~~-~~~ea~~~~~--~~g~PvVvKp~ 166 (442)
T 3lp8_A 98 GLSDALTE-EGILVFGPSKAAARLESSKGFTKELCMRY-------GIPTAKYGYFV-DTNSAYKFID--KHKLPLVVKAD 166 (442)
T ss_dssp THHHHHHH-TTCEEESCCHHHHHHHHCHHHHHHHHHHH-------TCCBCCEEEES-SHHHHHHHHH--HSCSSEEEEES
T ss_pred HHHHHHHh-cCCcEecCCHHHHHHhhCHHHHHHHHHHC-------CCCCCCEEEEC-CHHHHHHHHH--HcCCcEEEeEC
Confidence 45555555 378887 9999999999999999999986 89999999885 3223333333 47899999998
Q ss_pred cCCCCccceeeEEEeChhhHhcc-------------CCCeEEEecccCCCeEEEEEEEC--CEEEE--EEEecCCCCccc
Q 024006 105 VADGSAKSHELSLAYDQYSLKKL-------------EPPLVLQEFVNHGGVLFKVYIVG--EAIKV--VRRFSLPDVTKQ 167 (274)
Q Consensus 105 ~a~Gs~~sh~m~iv~~~~~l~~l-------------~~p~vvQefI~h~g~~~KV~VIG--~~v~~--~~R~S~p~~~~~ 167 (274)
.+. ++.++.++.+.+++.+. ..++++||||+ |.++.|.++. +.+.. ..+.--+.+
T Consensus 167 ~~~---gg~GV~iv~~~eel~~a~~~~~~~~~~g~~~~~vlvEe~i~--G~E~sv~~~~dg~~~~~~~~~~~~~~~~--- 238 (442)
T 3lp8_A 167 GLA---QGKGTVICHTHEEAYNAVDAMLVHHKFGEAGCAIIIEEFLE--GKEISFFTLVDGSNPVILGVAQDYKTIG--- 238 (442)
T ss_dssp SCC---TTTSEEEESSHHHHHHHHHHHHTSCTTGGGGSSEEEEECCC--SEEEEEEEEEESSCEEEEEEEEECCEEE---
T ss_pred CCC---CCCeEEEeCCHHHHHHHHHHHHhhcccCCCCCeEEEEEeec--CcEEEEEEEECCCeEEEeEEeEeeeecc---
Confidence 753 56799999999887531 25899999996 8999998884 34432 122211100
Q ss_pred ccccCCceeeecCcccccccCCcCC-CCccccCCCChHHHHHH----HHHHHHHhCCceeE---EeEEEeCCCCCeEEEE
Q 024006 168 DLSTSAGVFRFPRVSCAAASADDAD-LDPCVAELPPRPLLERL----AKELRRQLGLRLFN---LDIIREHGTRDQFYVI 239 (274)
Q Consensus 168 ~~~~~~g~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l----A~~~~~~lGl~l~G---~Dvi~~~~~g~~~~Vi 239 (274)
+ +....+... .+... +.. ++++. .+++.+. +.++.+++|+.+.| +|++++. +| ++|+
T Consensus 239 ~-----~~~g~~~gg-~g~~~-P~~~l~~~~-----~~~i~~~i~~~a~~~~~a~g~~~~G~~~ve~~~~~-~g--~~vi 303 (442)
T 3lp8_A 239 D-----NNKGPNTGG-MGSYS-KPNIITQEM-----EHIIIQKIIYPTIKAMFNMNIQFRGLLFAGIIIKK-NE--PKLL 303 (442)
T ss_dssp G-----GGEEEECSC-SEEEE-CTTSSCHHH-----HHHHHHHTHHHHHHHHHHTTCCCEEEEEEEEEEET-TE--EEEE
T ss_pred c-----CCCCCCCCC-cEEEe-eCCCCCHHH-----HHHHHHHHHHHHHHHHHHcCCCceeEEEEEEEEeC-CC--eEEE
Confidence 0 000000000 00000 111 22211 2344444 67777999996555 9999985 33 8999
Q ss_pred eccCCCCCCCccc----chHHHHHHHHHHHHhh
Q 024006 240 DINYFPGYGKMPE----YEHIFTDFLLSLTQSR 268 (274)
Q Consensus 240 DVN~fPg~~g~~~----~~~~l~~~l~~~~~~~ 268 (274)
|+|.-||-...+. +...|.+.+...+..+
T Consensus 304 EiN~R~g~~~~~~~~~~~~~dl~~~~~~~~~G~ 336 (442)
T 3lp8_A 304 EYNVRFGDPETQSILPRLNSDFLKLLSLTAKGK 336 (442)
T ss_dssp EEESSCCTTHHHHHGGGBCSCHHHHHHHHHHTC
T ss_pred EEecCCCCCchhhhHHHhCCCHHHHHHHHHcCC
Confidence 9999999332221 2234556666655543
No 47
>2dzd_A Pyruvate carboxylase; biotin carboxylase, ligase; 2.40A {Geobacillus thermodenitrificans}
Probab=99.55 E-value=6.4e-14 Score=133.95 Aligned_cols=184 Identities=11% Similarity=0.175 Sum_probs=123.2
Q ss_pred HHHHHHhCCCcEEe-CcHHHHHHhcCHHHHHHHHHhccccCCCCCccCCCEE--EEecCCCChhHHHHhcCCCCcEEEee
Q 024006 27 LEEYRQTHPEVTVL-DPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQL--VIERDASSIPDVVLKAGLTLPLVAKP 103 (274)
Q Consensus 27 l~~y~~~~P~v~Vi-dp~~ai~~l~dR~~~~~~L~~~~~~~~~~~I~~P~~~--~~~~~~~~~~~~l~~~~l~~P~VvKp 103 (274)
+.+..++ -+++++ +++++++.+.||..+.+.|++. ||++|++. .++ +.+++.+.+. .++||+|+||
T Consensus 96 ~~~~~~~-~gi~~~g~~~~~~~~~~dK~~~k~~l~~~-------Gip~p~~~~~~~~-~~~~~~~~~~--~~g~PvvvKp 164 (461)
T 2dzd_A 96 FAKRCRE-EGIIFIGPNENHLDMFGDKVKARHAAVNA-------GIPVIPGSDGPVD-GLEDVVAFAE--AHGYPIIIKA 164 (461)
T ss_dssp HHHHHHH-TTCEESSCCHHHHHHTTSHHHHHHHHHHT-------TCCBCCBCSSCCS-SHHHHHHHHH--HHCSCEEEEE
T ss_pred HHHHHHH-cCCEEECCCHHHHHHhhCHHHHHHHHHHc-------CCCCCCCcccCcC-CHHHHHHHHH--hcCCcEEEEe
Confidence 3344444 367765 7799999999999999999986 89999986 443 2223333232 3689999999
Q ss_pred CcCCCCccceeeEEEeChhhHhcc-------------CCCeEEEecccCCCeEEEEEEECC---EEEEE-EEecCCCCcc
Q 024006 104 LVADGSAKSHELSLAYDQYSLKKL-------------EPPLVLQEFVNHGGVLFKVYIVGE---AIKVV-RRFSLPDVTK 166 (274)
Q Consensus 104 ~~a~Gs~~sh~m~iv~~~~~l~~l-------------~~p~vvQefI~h~g~~~KV~VIG~---~v~~~-~R~S~p~~~~ 166 (274)
..++ +|.+|.++.+++++.+. +.++++||||+ +++++.|.++++ +++.. .|.. +.
T Consensus 165 ~~g~---gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEe~i~-g~~e~~v~v~~~~~G~~~~~~~~~~-~~--- 236 (461)
T 2dzd_A 165 ALGG---GGRGMRIVRSKSEVKEAFERAKSEAKAAFGSDEVYVEKLIE-NPKHIEVQILGDYEGNIVHLYERDC-SV--- 236 (461)
T ss_dssp STTC---SSSSEEEECCGGGHHHHHHHHHHHHHHHTSCCCEEEEECCC-SCEEEEEEEEECTTCCEEEEEEEEE-EE---
T ss_pred CCCC---CCCCEEEeCCHHHHHHHHHHHHHHHHhhcCCCcEEEEECCC-CCeEEEEEEEEcCCCCEEEEEeccc-cc---
Confidence 9864 46789999999887542 46899999996 348899988865 24433 2211 00
Q ss_pred cccccCCceeeecCcccccccCCcCCCCccccCCCChHHHHHHHHHHHHHhCCceeE-EeEEEeCCCCCeEEEEeccCCC
Q 024006 167 QDLSTSAGVFRFPRVSCAAASADDADLDPCVAELPPRPLLERLAKELRRQLGLRLFN-LDIIREHGTRDQFYVIDINYFP 245 (274)
Q Consensus 167 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lA~~~~~~lGl~l~G-~Dvi~~~~~g~~~~ViDVN~fP 245 (274)
.+.......+ + ....++++. .+++.++|.++.+++|+..++ +|++++. | +++++|+|.-|
T Consensus 237 --~~~~~~~~~~---~------P~~~l~~~~-----~~~i~~~a~~~~~~lg~~g~~~ve~~~~~--~-~~~viEiN~R~ 297 (461)
T 2dzd_A 237 --QRRHQKVVEV---A------PSVSLSDEL-----RQRICEAAVQLMRSVGYVNAGTVEFLVSG--D-EFYFIEVNPRI 297 (461)
T ss_dssp --EETTEEEEEE---E------SCTTSCHHH-----HHHHHHHHHHHHHHTTCCEEEEEEEEEET--T-EEEEEEEESSC
T ss_pred --cccccceEEE---C------CcccCCHHH-----HHHHHHHHHHHHHHcCCCcceEEEEEEeC--C-CEEEEEEECCC
Confidence 0000000000 0 000122111 356889999999999999765 9999985 3 68999999999
Q ss_pred CCC
Q 024006 246 GYG 248 (274)
Q Consensus 246 g~~ 248 (274)
|..
T Consensus 298 ~~~ 300 (461)
T 2dzd_A 298 QVE 300 (461)
T ss_dssp CGG
T ss_pred CCc
Confidence 753
No 48
>2r85_A PURP protein PF1517; ATP-grAsp superfamily, unknown function; HET: AMP; 1.70A {Pyrococcus furiosus} SCOP: c.30.1.8 d.142.1.9 PDB: 2r84_A* 2r86_A* 2r87_A*
Probab=99.55 E-value=3.1e-14 Score=129.32 Aligned_cols=177 Identities=19% Similarity=0.221 Sum_probs=110.3
Q ss_pred CCCcEEeCcHHHHHHhcCHHHHHHHHHhccccCCCCCccCCCEEEEecCCCChhHHHHhcCCCCcEEEeeCcCCCCccce
Q 024006 34 HPEVTVLDPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSH 113 (274)
Q Consensus 34 ~P~v~Vidp~~ai~~l~dR~~~~~~L~~~~~~~~~~~I~~P~~~~~~~~~~~~~~~l~~~~l~~P~VvKp~~a~Gs~~sh 113 (274)
.-+++++++.++++.++||..+.+.|++. ||++|++ ++ +. ..+.||+|+||..++ +|.
T Consensus 83 ~~g~~~~~~~~~~~~~~dK~~~~~~l~~~-------gip~p~~--~~-~~---------~~l~~P~vvKP~~g~---~s~ 140 (334)
T 2r85_A 83 NMKVPYFGNKRVLRWESDRNLERKWLKKA-------GIRVPEV--YE-DP---------DDIEKPVIVKPHGAK---GGK 140 (334)
T ss_dssp TCCSCBBSCTTHHHHHHSHHHHHHHHHHT-------TCCCCCB--CS-CG---------GGCCSCEEEEECC-------T
T ss_pred HcCCCccCCHHHHHHHHhHHHHHHHHHHc-------CCCCCCc--cC-Ch---------HHcCCCEEEEeCCCC---CCC
Confidence 35778889999999999999999999986 8999998 32 21 125699999999965 467
Q ss_pred eeEEEeChhhHhcc----------C--CCeEEEecccCCCeEEEEEE----ECCEEEE--E-EEecCC-C-C---ccc-c
Q 024006 114 ELSLAYDQYSLKKL----------E--PPLVLQEFVNHGGVLFKVYI----VGEAIKV--V-RRFSLP-D-V---TKQ-D 168 (274)
Q Consensus 114 ~m~iv~~~~~l~~l----------~--~p~vvQefI~h~g~~~KV~V----IG~~v~~--~-~R~S~p-~-~---~~~-~ 168 (274)
++.++.+++++... . .++++||||+ |..+-+.+ +++++.. . .|.... + + ... .
T Consensus 141 Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~lvee~i~--G~e~~~~~~~~~~~~~v~~~~~~g~~~~~~~~~~~~~~~~~ 218 (334)
T 2r85_A 141 GYFLAKDPEDFWRKAEKFLGIKRKEDLKNIQIQEYVL--GVPVYPHYFYSKVREELELMSIDRRYESNVDAIGRIPAKDQ 218 (334)
T ss_dssp TCEEESSHHHHHHHHHHHHCCCSGGGCCSEEEEECCC--CEEEEEEEEEETTTTEEEEEEEEEEEEEEGGGGGGSCHHHH
T ss_pred CEEEECCHHHHHHHHHHHHhhcccCCCCcEEEEeccC--CceeEEEEeecCcCceeeeeeeccEEEeccCcccccccccc
Confidence 89999999887542 2 6899999995 66665322 2222111 1 111110 0 0 000 0
Q ss_pred cccCCceeeecCcccccccCCcCCCCccccCCCChHHHHHHHHHHHHHh-----CCc-eeEEeEEEeCCCCCeEEEEecc
Q 024006 169 LSTSAGVFRFPRVSCAAASADDADLDPCVAELPPRPLLERLAKELRRQL-----GLR-LFNLDIIREHGTRDQFYVIDIN 242 (274)
Q Consensus 169 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lA~~~~~~l-----Gl~-l~G~Dvi~~~~~g~~~~ViDVN 242 (274)
+..+.+. .....|.. +..++++. .++++++|.++.++| +.. ++++|++++. +| ++|++|||
T Consensus 219 ~~~~~~~----~~~~~g~~--p~~l~~~~-----~~~i~~~a~~~~~~l~~~~~~~~G~~~vd~~~~~-~g-~~~viEiN 285 (334)
T 2r85_A 219 LEFDMDI----TYTVIGNI--PIVLRESL-----LMDVIEAGERVVKAAEELMGGLWGPFCLEGVFTP-DL-EFVVFEIS 285 (334)
T ss_dssp TTSCCCC----CEEEEEEE--ECCCCGGG-----HHHHHHHHHHHHHHHHHHSSCCCEEEEEEEEECT-TS-CEEEEEEE
T ss_pred cccccCC----ceeeeCCC--CcccCHHH-----HHHHHHHHHHHHHHHHhhcccccccEEEEEEECC-CC-CEEEEEEe
Confidence 0000000 00000000 11222221 467899999999999 555 7789999975 34 58999999
Q ss_pred CCCCC
Q 024006 243 YFPGY 247 (274)
Q Consensus 243 ~fPg~ 247 (274)
.-||-
T Consensus 286 ~R~g~ 290 (334)
T 2r85_A 286 ARIVA 290 (334)
T ss_dssp CSCCG
T ss_pred CCcCC
Confidence 99987
No 49
>3mjf_A Phosphoribosylamine--glycine ligase; structural genomics, CEN structural genomics of infectious diseases, csgid; HET: MSE PGE; 1.47A {Yersinia pestis} PDB: 1gso_A
Probab=99.55 E-value=7.7e-14 Score=133.04 Aligned_cols=210 Identities=13% Similarity=0.036 Sum_probs=130.3
Q ss_pred HHHHHHHHhCCCcEEe-CcHHHHHHhcCHHHHHHHHHhccccCCCCCccCCCEEEEecCCCChhHHHHhcCCCCcEEEee
Q 024006 25 QILEEYRQTHPEVTVL-DPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKP 103 (274)
Q Consensus 25 ~~l~~y~~~~P~v~Vi-dp~~ai~~l~dR~~~~~~L~~~~~~~~~~~I~~P~~~~~~~~~~~~~~~l~~~~l~~P~VvKp 103 (274)
..+.+..++ -+++++ .+.++++.+.||..+.+.|++. |||+|++..++ +.++..+.+. .++||+|+||
T Consensus 81 ~~~~~~l~~-~Gi~~~Gp~~~a~~~~~dK~~~k~~l~~~-------GIptp~~~~~~-~~~ea~~~~~--~~g~PvVvKp 149 (431)
T 3mjf_A 81 IGVVDAFRA-AGLAIFGPTQAAAQLEGSKAFTKDFLARH-------NIPSAEYQNFT-DVEAALAYVR--QKGAPIVIKA 149 (431)
T ss_dssp TTHHHHHHH-TTCCEESCCHHHHHHHHCHHHHHHHHHHT-------TCSBCCEEEES-CHHHHHHHHH--HHCSSEEEEE
T ss_pred HHHHHHHHh-cCCCeeCCCHHHHHHhhCHHHHHHHHHHc-------CCCCCCeEeeC-CHHHHHHHHH--HcCCeEEEEE
Confidence 445555555 367777 9999999999999999999986 89999999885 3233333333 3689999999
Q ss_pred CcCCCCccceeeEEEeChhhHhcc-------------CCCeEEEecccCCCeEEEEEEECC--EEEEEEEecCCCCcccc
Q 024006 104 LVADGSAKSHELSLAYDQYSLKKL-------------EPPLVLQEFVNHGGVLFKVYIVGE--AIKVVRRFSLPDVTKQD 168 (274)
Q Consensus 104 ~~a~Gs~~sh~m~iv~~~~~l~~l-------------~~p~vvQefI~h~g~~~KV~VIG~--~v~~~~R~S~p~~~~~~ 168 (274)
..+. .+.++.++.+.+++.+. ..++++||||+ |.++.|.++.| .+... +-. .+
T Consensus 150 ~~~~---gg~GV~iv~~~~el~~a~~~~~~~~~~g~~~~~vlvEe~i~--G~E~sv~~~~dg~~~~~~-----~~~--~~ 217 (431)
T 3mjf_A 150 DGLA---AGKGVIVAMTQEEAETAVNDMLAGNAFGDAGHRIVVEEFLD--GEEASFIVMVDGENVLPM-----ATS--QD 217 (431)
T ss_dssp SSSC---TTCSEEEECSHHHHHHHHHHHHTTHHHHCCCCCEEEEECCC--SEEEEEEEEEESSCEEEC-----CCB--EE
T ss_pred CCCC---CCCcEEEeCCHHHHHHHHHHHHhhccccCCCCeEEEEEeeC--CcEEEEEEEEcCCEEEEE-----Eee--Ee
Confidence 8753 57799999999887532 35899999996 89999998843 44321 100 00
Q ss_pred cccCCceeeecCcccccccC--CcCC-CCccccCCCChHHHHHH----HHHHHHHhCCceeE---EeEEEeCCCCCeEEE
Q 024006 169 LSTSAGVFRFPRVSCAAASA--DDAD-LDPCVAELPPRPLLERL----AKELRRQLGLRLFN---LDIIREHGTRDQFYV 238 (274)
Q Consensus 169 ~~~~~g~~~~~~~~~~~~~~--~~~~-~~~~~~~~~~~~~~~~l----A~~~~~~lGl~l~G---~Dvi~~~~~g~~~~V 238 (274)
. ...++++.....+... .+.. ++++. .+++.+. +.++.+++|+.+.| +|++.+. +| ++++
T Consensus 218 ~---~~~~~~~~g~~~gg~g~~~P~~~l~~~~-----~~~i~~~i~~~~~~~~~~~g~~~~G~~~ve~~~~~-~g-~~~v 287 (431)
T 3mjf_A 218 H---KRVGDGDTGPNTGGMGAYSPAPVVTDDV-----HQRVMDQVIWPTVRGMAAEGNIYTGFLYAGLMISA-DG-QPKV 287 (431)
T ss_dssp C---CEEETTTEEEECSCSEEEESCTTSCHHH-----HHHHHHHTHHHHHHHHHHTTCCCEEEEEEEEEECT-TS-CEEE
T ss_pred c---eecccCCCCCCCCCceEEeeCCCCCHHH-----HHHHHHHHHHHHHHHHHHcCCCcEEEEEEEEEEeC-CC-CeEE
Confidence 0 0011111000000000 0111 22111 1223332 45666888997655 9999985 44 5899
Q ss_pred EeccCCCCCCCcc----cchHHHHHHHHHHHHh
Q 024006 239 IDINYFPGYGKMP----EYEHIFTDFLLSLTQS 267 (274)
Q Consensus 239 iDVN~fPg~~g~~----~~~~~l~~~l~~~~~~ 267 (274)
+|+|.-||....+ .....|.+.+...+..
T Consensus 288 iEiN~R~G~~~~~~i~~~~g~dl~~~~~~~~~G 320 (431)
T 3mjf_A 288 IEFNCRFGDPETQPIMLRMRSDLVELCLAGTQG 320 (431)
T ss_dssp EEECGGGSTTTHHHHHHHBCSCHHHHHHHHHTT
T ss_pred EEEecCCCCcHHHHHHHHHCCCHHHHHHHHHcC
Confidence 9999999944433 1223345555555544
No 50
>2w70_A Biotin carboxylase; ligase, ATP-binding, fatty acid biosynthesis, nucleotide-BIN lipid synthesis, ATP-grAsp domain, fragment screening; HET: L22; 1.77A {Escherichia coli} PDB: 1bnc_A 2j9g_A* 2v58_A* 2v59_A* 2v5a_A* 2vr1_A* 2w6m_A* 1dv1_A* 2w6o_A* 2w6n_A* 2w6q_A* 2w6z_A* 2w6p_A* 2w71_A* 3jzf_A* 3jzi_A* 3rv3_A* 3rup_A* 1dv2_A* 3rv4_A* ...
Probab=99.55 E-value=9.2e-14 Score=132.30 Aligned_cols=182 Identities=10% Similarity=0.153 Sum_probs=122.9
Q ss_pred HHHHHhCCCcEEe-CcHHHHHHhcCHHHHHHHHHhccccCCCCCccCCCEE--EEecCCCCh-hHHHHhcCCCCcEEEee
Q 024006 28 EEYRQTHPEVTVL-DPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQL--VIERDASSI-PDVVLKAGLTLPLVAKP 103 (274)
Q Consensus 28 ~~y~~~~P~v~Vi-dp~~ai~~l~dR~~~~~~L~~~~~~~~~~~I~~P~~~--~~~~~~~~~-~~~l~~~~l~~P~VvKp 103 (274)
.+..++ -+++++ .++++++.+.||..+.+.|++. ||++|++. .++ +.+++ .+.+. .++||+|+||
T Consensus 92 ~~~~e~-~gi~~~g~~~~~~~~~~dK~~~k~~l~~~-------gip~p~~~~~~~~-~~~~~~~~~~~--~~g~PvvvKp 160 (449)
T 2w70_A 92 AEQVER-SGFIFIGPKAETIRLMGDKVSAIAAMKKA-------GVPCVPGSDGPLG-DDMDKNRAIAK--RIGYPVIIKA 160 (449)
T ss_dssp HHHHHH-TTCEESSSCHHHHHHHHSHHHHHHHHHHH-------TCCBCSBCSSCCC-SCHHHHHHHHH--HHCSSEEEEE
T ss_pred HHHHHH-cCCceECCCHHHHHHhcCHHHHHHHHHHc-------CCCcCCCcccccC-CHHHHHHHHHH--HhCCcEEEEE
Confidence 344444 367766 5799999999999999999986 89999986 554 33233 33333 3689999999
Q ss_pred CcCCCCccceeeEEEeChhhHhcc-------------CCCeEEEecccCCCeEEEEEEECC---EEEEE-EEecCCCCcc
Q 024006 104 LVADGSAKSHELSLAYDQYSLKKL-------------EPPLVLQEFVNHGGVLFKVYIVGE---AIKVV-RRFSLPDVTK 166 (274)
Q Consensus 104 ~~a~Gs~~sh~m~iv~~~~~l~~l-------------~~p~vvQefI~h~g~~~KV~VIG~---~v~~~-~R~S~p~~~~ 166 (274)
..++ +|.++.++.+++++.+. +.++++||||+ +++++.|.++++ ++... .|.. + .
T Consensus 161 ~~g~---gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEe~i~-g~~e~~v~~~~~~~G~~~~~~~~~~-~-~-- 232 (449)
T 2w70_A 161 SGGG---GGRGMRVVRGDAELAQSISMTRAEAKAAFSNDMVYMEKYLE-NPRHVEIQVLADGQGNAIYLAERDC-S-M-- 232 (449)
T ss_dssp TTCC---TTTTCEEECSHHHHHHHHHHHHHHHHHHHSCCCEEEEECCS-SCEEEEEEEEECTTSCEEEEEEEEE-E-E--
T ss_pred CCCC---CCCCEEEeCCHHHHHHHHHHHHHHHHhhcCCCcEEEEeccC-CCeEEEEEEEEcCCCCEEEEeceec-c-c--
Confidence 9864 46789999999887542 56899999996 348999988863 34433 3311 0 0
Q ss_pred cccccCCceeeecCcccccccCCcC-CCCccccCCCChHHHHHHHHHHHHHhCCc-eeEEeEEEeCCCCCeEEEEeccCC
Q 024006 167 QDLSTSAGVFRFPRVSCAAASADDA-DLDPCVAELPPRPLLERLAKELRRQLGLR-LFNLDIIREHGTRDQFYVIDINYF 244 (274)
Q Consensus 167 ~~~~~~~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~lA~~~~~~lGl~-l~G~Dvi~~~~~g~~~~ViDVN~f 244 (274)
.+ .. ..... . .+. .++++. .++++++|.++.++||+. ++++|++++. | +++++|+|.-
T Consensus 233 --~~-~~-~~~~~-----~---~p~~~l~~~~-----~~~i~~~a~~~~~~lg~~G~~~ve~~~~~--~-~~~viEiN~R 292 (449)
T 2w70_A 233 --QR-RH-QKVVE-----E---APAPGITPEL-----RRYIGERCAKACVDIGYRGAGTFEFLFEN--G-EFYFIEMNTR 292 (449)
T ss_dssp --EE-TT-EEEEE-----E---ESCTTCCHHH-----HHHHHHHHHHHHHHHTCCEEEEEEEEEET--T-EEEEEEEECS
T ss_pred --cc-CC-cceee-----e---CCcccCCHHH-----HHHHHHHHHHHHHHcCCCceEEEEEEEEC--C-CEEEEEEECC
Confidence 00 00 00000 0 001 122211 356889999999999998 5669999985 3 6899999998
Q ss_pred CCCC
Q 024006 245 PGYG 248 (274)
Q Consensus 245 Pg~~ 248 (274)
||-.
T Consensus 293 ~~~~ 296 (449)
T 2w70_A 293 IQVE 296 (449)
T ss_dssp CCTT
T ss_pred CCcc
Confidence 8743
No 51
>2vpq_A Acetyl-COA carboxylase; bacteria, ATP-grAsp domain, biotin carboxylase, ligase; HET: ANP; 2.1A {Staphylococcus aureus}
Probab=99.55 E-value=1.1e-13 Score=131.76 Aligned_cols=184 Identities=14% Similarity=0.206 Sum_probs=123.2
Q ss_pred HHHHHHhCCCcEEeC-cHHHHHHhcCHHHHHHHHHhccccCCCCCccCCCEE--EEecCCCChhHHHHhcCCCCcEEEee
Q 024006 27 LEEYRQTHPEVTVLD-PPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQL--VIERDASSIPDVVLKAGLTLPLVAKP 103 (274)
Q Consensus 27 l~~y~~~~P~v~Vid-p~~ai~~l~dR~~~~~~L~~~~~~~~~~~I~~P~~~--~~~~~~~~~~~~l~~~~l~~P~VvKp 103 (274)
+.+..+. -+++++. +.++++.+.||..+.+.|++. ||++|++. .++ +.+++.+.+. .++||+|+||
T Consensus 90 ~~~~~~~-~gi~~~g~~~~~~~~~~dK~~~k~~l~~~-------gip~p~~~~~~~~-~~~~~~~~~~--~~g~PvvvKp 158 (451)
T 2vpq_A 90 FAELCEA-CQLKFIGPSYQSIQKMGIKDVAKAEMIKA-------NVPVVPGSDGLMK-DVSEAKKIAK--KIGYPVIIKA 158 (451)
T ss_dssp HHHHHHT-TTCEESSSCHHHHHHHHSHHHHHHHHHHT-------TCCBCSBCSSCBS-CHHHHHHHHH--HHCSSEEEEE
T ss_pred HHHHHHH-cCCeEECCCHHHHHHhcCHHHHHHHHHHc-------CCCcCCCcccCcC-CHHHHHHHHH--hcCCcEEEEE
Confidence 3444443 4788776 589999999999999999986 89998865 453 2223333332 3689999999
Q ss_pred CcCCCCccceeeEEEeChhhHhcc-------------CCCeEEEecccCCCeEEEEEEECC---EEEEE-EEe-cCCCCc
Q 024006 104 LVADGSAKSHELSLAYDQYSLKKL-------------EPPLVLQEFVNHGGVLFKVYIVGE---AIKVV-RRF-SLPDVT 165 (274)
Q Consensus 104 ~~a~Gs~~sh~m~iv~~~~~l~~l-------------~~p~vvQefI~h~g~~~KV~VIG~---~v~~~-~R~-S~p~~~ 165 (274)
..++ +|.+|.++.+++++.+. +.++++||||+. ++++.|.++++ ++... .|. +..
T Consensus 159 ~~g~---gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEe~i~g-~~e~~v~v~~~~~G~~~~~~~~~~~~~--- 231 (451)
T 2vpq_A 159 TAGG---GGKGIRVARDEKELETGFRMTEQEAQTAFGNGGLYMEKFIEN-FRHIEIQIVGDSYGNVIHLGERDCTIQ--- 231 (451)
T ss_dssp TTCC---TTCSEEEESSHHHHHHHHHHHHHHHHHHHSCCCEEEEECCCS-EEEEEEEEEECTTSCEEEEEEEEEEEE---
T ss_pred CCCC---CCCCEEEeCCHHHHHHHHHHHHHHHHhhcCCCcEEEEEecCC-CeEEEEEEEEcCCCCEEEEeccccchh---
Confidence 9864 46789999999887541 468999999962 37899988864 34433 222 110
Q ss_pred ccccccCCceeeecCcccccccCCcCC-CCccccCCCChHHHHHHHHHHHHHhCCce-eEEeEEEeCCCCCeEEEEeccC
Q 024006 166 KQDLSTSAGVFRFPRVSCAAASADDAD-LDPCVAELPPRPLLERLAKELRRQLGLRL-FNLDIIREHGTRDQFYVIDINY 243 (274)
Q Consensus 166 ~~~~~~~~g~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~lA~~~~~~lGl~l-~G~Dvi~~~~~g~~~~ViDVN~ 243 (274)
+....... . .+.. ++++. .++++++|.++.++||+.- +++|++++..+| ++||+|+|.
T Consensus 232 ----~~~~~~~~-------~---~P~~~l~~~~-----~~~i~~~a~~~~~~lg~~G~~~ve~~~~~~~g-~~~viEiN~ 291 (451)
T 2vpq_A 232 ----RRMQKLVE-------E---APSPILDDET-----RREMGNAAVRAAKAVNYENAGTIEFIYDLNDN-KFYFMEMNT 291 (451)
T ss_dssp ----ETTEEEEE-------E---ESCTTCCHHH-----HHHHHHHHHHHHHHTTCCEEEEEEEEEETTTT-EEEEEEEEC
T ss_pred ----ccccceEE-------E---cCCCCCCHHH-----HHHHHHHHHHHHHHcCCcceEEEEEEEECCCC-CEEEEEeeC
Confidence 00000000 0 0111 22111 3568899999999999984 459999982245 699999999
Q ss_pred CCCCC
Q 024006 244 FPGYG 248 (274)
Q Consensus 244 fPg~~ 248 (274)
-||-.
T Consensus 292 R~~~~ 296 (451)
T 2vpq_A 292 RIQVE 296 (451)
T ss_dssp SCCTT
T ss_pred CCCCc
Confidence 99754
No 52
>2yrx_A Phosphoribosylglycinamide synthetase; glycinamide ribonucleotide synthetase, GAR synthetase; HET: AMP; 1.90A {Geobacillus kaustophilus} PDB: 2yrw_A* 2ys6_A* 2ys7_A
Probab=99.54 E-value=1.4e-13 Score=131.44 Aligned_cols=188 Identities=10% Similarity=0.066 Sum_probs=117.2
Q ss_pred HHHHHHHhCCCcEEe-CcHHHHHHhcCHHHHHHHHHhccccCCCCCccCCCEEEEecCCCChhHHHHhcCCCCcEEEeeC
Q 024006 26 ILEEYRQTHPEVTVL-DPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPL 104 (274)
Q Consensus 26 ~l~~y~~~~P~v~Vi-dp~~ai~~l~dR~~~~~~L~~~~~~~~~~~I~~P~~~~~~~~~~~~~~~l~~~~l~~P~VvKp~ 104 (274)
.+.+..++ -+++++ .++++++.+.||..+.+.|++. ||++|++..++ +.+++.+.+. .++||+|+||.
T Consensus 98 ~~~~~l~~-~gi~~~g~~~~~~~~~~dK~~~k~~l~~~-------gip~p~~~~~~-~~~~~~~~~~--~~~~PvVvKp~ 166 (451)
T 2yrx_A 98 GIVDRFMA-EGLRIFGPSQRAALIEGSKAFAKELMKKY-------GIPTADHAAFT-SYEEAKAYIE--QKGAPIVIKAD 166 (451)
T ss_dssp THHHHHHH-TTCCEESCCHHHHHHHHCHHHHHHHHHHT-------TCCBCCEEEES-CHHHHHHHHH--HHCSSEEEEEC
T ss_pred HHHHHHHH-CCCCEeCccHHHHHHhhCHHHHHHHHHHc-------CCCCCCeEEEC-CHHHHHHHHH--hcCCcEEEEeC
Confidence 34444444 367777 7889999999999999999986 89999998885 3223333333 36899999999
Q ss_pred cCCCCccceeeEEEeChhhHhcc-------------CCCeEEEecccCCCeEEEEEEE--CCEEEEE--EEecCCCCccc
Q 024006 105 VADGSAKSHELSLAYDQYSLKKL-------------EPPLVLQEFVNHGGVLFKVYIV--GEAIKVV--RRFSLPDVTKQ 167 (274)
Q Consensus 105 ~a~Gs~~sh~m~iv~~~~~l~~l-------------~~p~vvQefI~h~g~~~KV~VI--G~~v~~~--~R~S~p~~~~~ 167 (274)
.++ ++.++.++.+++++... ..++++||||+ |.++.|.++ |+.+... .|..
T Consensus 167 ~~~---gg~Gv~~v~~~~el~~~~~~~~~~~~~g~~~~~~lvEe~i~--G~E~sv~~~~dG~~~~~~~~~~~~------- 234 (451)
T 2yrx_A 167 GLA---AGKGVTVAQTVEEALAAAKAALVDGQFGTAGSQVVIEEYLE--GEEFSFMAFVNGEKVYPLAIAQDH------- 234 (451)
T ss_dssp C-------CCEEEESSHHHHHHHHHHHHHHSCCBTTBCCEEEEECCC--SEEEEEEEEEETTEEEECCCBEEC-------
T ss_pred CCC---CCCcEEEECCHHHHHHHHHHHHhccccCCCCCeEEEEECCc--CcEEEEEEEEcCCEEEEeeeEEec-------
Confidence 864 46789999999887531 26899999996 899999887 4433321 1110
Q ss_pred ccccCCceeeecCcccccccC--CcCC-CCccccCCCChHHH-HHHHHHHHHHh---CCce---eEEeEEEeCCCCCeEE
Q 024006 168 DLSTSAGVFRFPRVSCAAASA--DDAD-LDPCVAELPPRPLL-ERLAKELRRQL---GLRL---FNLDIIREHGTRDQFY 237 (274)
Q Consensus 168 ~~~~~~g~~~~~~~~~~~~~~--~~~~-~~~~~~~~~~~~~~-~~lA~~~~~~l---Gl~l---~G~Dvi~~~~~g~~~~ 237 (274)
...+++......+... .+.. ++++. .+++ ++++.++.++| |+.+ +++|++++. +| ++
T Consensus 235 -----~~~~~~~~~~~~g~~~~~~p~~~l~~~~-----~~~~~~~~~~~~~~~l~~~g~~~~G~~~ve~~~~~-~g--~~ 301 (451)
T 2yrx_A 235 -----KRAYDGDEGPNTGGMGAYSPVPQISDEM-----MDAALEAILRPAAKALAAEGRPFLGVLYAGLMATA-NG--PK 301 (451)
T ss_dssp -----CEEETTTEEEECSCSEEEESCTTSCHHH-----HHHHHHHTHHHHHHHHHHTTCCCEEEEEEEEEEET-TE--EE
T ss_pred -----cccccCCCCCCCCCCeEEccCCCCCHHH-----HHHHHHHHHHHHHHHHHHcCCCceeEEEEEEEEeC-CC--cE
Confidence 0001000000000000 0111 22111 2233 55677777765 6654 558999985 34 89
Q ss_pred EEeccCCCCCCC
Q 024006 238 VIDINYFPGYGK 249 (274)
Q Consensus 238 ViDVN~fPg~~g 249 (274)
|+|+|.-||-.+
T Consensus 302 viEiN~R~g~~~ 313 (451)
T 2yrx_A 302 VIEFNARFGDPE 313 (451)
T ss_dssp EEEEESSCCTTH
T ss_pred EEEEecCCCCcH
Confidence 999999999554
No 53
>2xcl_A Phosphoribosylamine--glycine ligase; GAR-SYN, ATP-grAsp, metal binding; HET: ANP; 2.10A {Bacillus subtilis} PDB: 2xd4_A*
Probab=99.53 E-value=8.2e-14 Score=131.50 Aligned_cols=190 Identities=13% Similarity=0.094 Sum_probs=120.3
Q ss_pred HHHHHHHhCCCcEEe-CcHHHHHHhcCHHHHHHHHHhccccCCCCCccCCCEEEEecCCCChhHHHHhcCCCCcEEEeeC
Q 024006 26 ILEEYRQTHPEVTVL-DPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPL 104 (274)
Q Consensus 26 ~l~~y~~~~P~v~Vi-dp~~ai~~l~dR~~~~~~L~~~~~~~~~~~I~~P~~~~~~~~~~~~~~~l~~~~l~~P~VvKp~ 104 (274)
.+.+..+. -+++++ ++.++++.+.||..+.+.|++. ||++|++..++ +.+++.+.+. .++||+|+||.
T Consensus 77 ~~~~~l~~-~gi~~~g~~~~~~~~~~dK~~~k~~l~~~-------gip~p~~~~~~-~~~~~~~~~~--~~~~P~vvKp~ 145 (422)
T 2xcl_A 77 GLVDEFEK-AGLHVFGPSKAAAIIEGSKQFAKDLMKKY-------DIPTAEYETFT-SFDEAKAYVQ--EKGAPIVIKAD 145 (422)
T ss_dssp THHHHHHH-TTCCEESCCTTTTHHHHCHHHHHHHHHHT-------TCCBCCEEEES-CHHHHHHHHH--HHCSSEEEEES
T ss_pred HHHHHHHH-CCCCEECcCHHHHHHhcCHHHHHHHHHHc-------CCCCCCeEEEC-CHHHHHHHHH--hcCCCEEEEeC
Confidence 34444444 367777 8999999999999999999986 89999998885 3223333333 36899999998
Q ss_pred cCCCCccceeeEEEeChhhHhcc-------------CCCeEEEecccCCCeEEEEEEE--CCEEEEE--EEecCCCCccc
Q 024006 105 VADGSAKSHELSLAYDQYSLKKL-------------EPPLVLQEFVNHGGVLFKVYIV--GEAIKVV--RRFSLPDVTKQ 167 (274)
Q Consensus 105 ~a~Gs~~sh~m~iv~~~~~l~~l-------------~~p~vvQefI~h~g~~~KV~VI--G~~v~~~--~R~S~p~~~~~ 167 (274)
.++ +|.++.++.+.+++... ..++++||||+ |.++.|.++ |+.++.. .|..-..+
T Consensus 146 ~~~---~g~Gv~~v~~~~el~~~~~~~~~~~~~g~~~~~~lvEe~i~--g~E~sv~~~~dG~~~~~~~~~~~~~~~~--- 217 (422)
T 2xcl_A 146 GLA---AGKGVTVAMTEEEAIACLHDFLEDEKFGDASASVVIEEYLS--GEEFSLMAFVKGEKVYPMVIAQDHKRAF--- 217 (422)
T ss_dssp SCG---GGTCEEEESSHHHHHHHHHHHHTSCTTGGGGSSEEEEECCC--SEEEEEEEEEETTEEEECCCBEEEEEEE---
T ss_pred CCC---CCCcEEEECCHHHHHHHHHHHHhhhhccCCCCeEEEEECCc--CcEEEEEEEEcCCEEEecceeeeeehhc---
Confidence 853 57799999999887541 26899999996 899999888 4443321 11100000
Q ss_pred ccccCCceeeecCcccccccCCcCC-CCccccCCCChHHH-HHHHHHHHHHh---CCce---eEEeEEEeCCCCCeEEEE
Q 024006 168 DLSTSAGVFRFPRVSCAAASADDAD-LDPCVAELPPRPLL-ERLAKELRRQL---GLRL---FNLDIIREHGTRDQFYVI 239 (274)
Q Consensus 168 ~~~~~~g~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~~lA~~~~~~l---Gl~l---~G~Dvi~~~~~g~~~~Vi 239 (274)
+. ..+. + .... +.. .+.. ++++. .+++ ++++.++.++| |+.+ +++|++++. +| ++|+
T Consensus 218 ~~--~~~~-~--~g~~-~~~-~p~~~l~~~~-----~~~~~~~~~~~~~~~l~~~g~~~~G~~~vd~~~~~-~g--~~vi 282 (422)
T 2xcl_A 218 DG--DKGP-N--TGGM-GAY-SPVPQISEET-----VRHAVETIVKPAAKAMVQEGRSFTGVLYAGLMLTE-NG--SKVI 282 (422)
T ss_dssp GG--GEEE-E--EEEE-EEE-ESCTTSCHHH-----HHHHHHHTHHHHHHHHHHTTCCCEEEEEEEEEEET-TE--EEEE
T ss_pred CC--CCCC-C--CCCC-eeE-ccCCCCCHHH-----HHHHHHHHHHHHHHHHHHcCCCcEEEEEeeEEEeC-CC--cEEE
Confidence 00 0000 0 0000 000 0111 22111 1223 34777777776 6665 558999985 34 8999
Q ss_pred eccCCCCCCC
Q 024006 240 DINYFPGYGK 249 (274)
Q Consensus 240 DVN~fPg~~g 249 (274)
|+|.-||-.+
T Consensus 283 EiN~R~g~~~ 292 (422)
T 2xcl_A 283 EFNARFGDPE 292 (422)
T ss_dssp EEESSCCTTT
T ss_pred EEecCCCCcH
Confidence 9999999655
No 54
>3glk_A Acetyl-COA carboxylase 2; ATP binding, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase, lipid synthesis, manganese; 2.10A {Homo sapiens} PDB: 3gid_A 2hjw_A 2yl2_A
Probab=99.53 E-value=1.2e-13 Score=135.66 Aligned_cols=185 Identities=14% Similarity=0.137 Sum_probs=118.5
Q ss_pred HHHHHhCCCcEEe-CcHHHHHHhcCHHHHHHHHHhccccCCCCCccCCCEEE--E--ec---------------------
Q 024006 28 EEYRQTHPEVTVL-DPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLV--I--ER--------------------- 81 (274)
Q Consensus 28 ~~y~~~~P~v~Vi-dp~~ai~~l~dR~~~~~~L~~~~~~~~~~~I~~P~~~~--~--~~--------------------- 81 (274)
++..+. -+++++ .++++++.+.||..+.+.|.+. |||+|++.. + +.
T Consensus 141 a~~le~-~Gi~~iGp~~~ai~~~~DK~~~k~ll~~~-------GVPvp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (540)
T 3glk_A 141 PELLCK-NGVAFLGPPSEAMWALGDKIASTVVAQTL-------QVPTLPWSGSGLTVEWTEDDLQQGKRISVPEDVYDKG 212 (540)
T ss_dssp HHHHHH-TTCEESSCCHHHHC---CHHHHHHHHHHT-------TCCBCCBTTTTCCCCCCCTTC----CCCCCHHHHHHT
T ss_pred HHHHHH-cCCceeCCCHHHHHHhCCHHHHHHHHHHc-------CCCCCCccccccccccccccccccccccccccccccc
Confidence 344444 378888 8999999999999999999986 899998765 0 00
Q ss_pred CCCChhHHH-HhcCCCCcEEEeeCcCCCCccceeeEEEeChhhHhcc---------CCCeEEEecccCCCeEEEEEEECC
Q 024006 82 DASSIPDVV-LKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKKL---------EPPLVLQEFVNHGGVLFKVYIVGE 151 (274)
Q Consensus 82 ~~~~~~~~l-~~~~l~~P~VvKp~~a~Gs~~sh~m~iv~~~~~l~~l---------~~p~vvQefI~h~g~~~KV~VIG~ 151 (274)
...+..+.. ....++||+|+||..|+ +|.+|.++.++++|.+. +.++++||||+ +++.+.|-|++|
T Consensus 213 ~v~s~~ea~~~a~~igyPvVVKp~~gg---GG~Gv~iv~~~~eL~~a~~~~~~~~~~~~vlVEe~I~-g~rei~V~vl~d 288 (540)
T 3glk_A 213 CVKDVDEGLEAAERIGFPLMIKASEGG---GGKGIRKAESAEDFPILFRQVQSEIPGSPIFLMKLAQ-HARHLEVQILAD 288 (540)
T ss_dssp SCCSHHHHHHHHHHHCSSEEEEETTCC-------EEEECSTTTHHHHHHHHHHHSTTCCEEEEECCS-SEEEEEEEEEEC
T ss_pred CcCCHHHHHHHHHhcCCcEEEEECCCC---CCCCEEEECCHHHHHHHHHHHHhhccCCCEEEEEecC-CCcEEEEEEEEc
Confidence 011121111 12347899999999864 46799999999888642 56899999995 239999999986
Q ss_pred E---EEEE-EEe-cCCCCcccccccCCceeeecCcccccccCCcCC-CCccccCCCChHHHHHHHHHHHHHhCCc-eeEE
Q 024006 152 A---IKVV-RRF-SLPDVTKQDLSTSAGVFRFPRVSCAAASADDAD-LDPCVAELPPRPLLERLAKELRRQLGLR-LFNL 224 (274)
Q Consensus 152 ~---v~~~-~R~-S~p~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~lA~~~~~~lGl~-l~G~ 224 (274)
. ++.. .|. +... .+...... .+.. ++++. .+++.++|.++.+++|+. .+++
T Consensus 289 ~~G~vv~l~~rd~s~qr--------------~~~k~ie~---~Pa~~l~~~~-----~~~l~~~a~~~~~alG~~G~~~V 346 (540)
T 3glk_A 289 QYGNAVSLFGRDCSIQR--------------RHQKIVEE---APATIAPLAI-----FEFMEQCAIRLAKTVGYVSAGTV 346 (540)
T ss_dssp TTSCEEEEEEEEEEEC-----------------CCSEEE---ESCTTSCHHH-----HHHHHHHHHHHHHHHTCCEEEEE
T ss_pred CCCCEEEEeceeeeeee--------------cccceEEe---cCCCCCCHHH-----HHHHHHHHHHHHHHcCCccceEE
Confidence 3 4332 332 2110 01000000 0111 12211 456889999999999997 4559
Q ss_pred eEEEeCCCCCeEEEEeccCCCCCC
Q 024006 225 DIIREHGTRDQFYVIDINYFPGYG 248 (274)
Q Consensus 225 Dvi~~~~~g~~~~ViDVN~fPg~~ 248 (274)
|++++. +| ++|++|+|.-||-.
T Consensus 347 Ef~~d~-dg-~~~~lEiNpR~~~~ 368 (540)
T 3glk_A 347 EYLYSQ-DG-SFHFLELNPRLQVE 368 (540)
T ss_dssp EEEEET-TS-CEEEEEEECSCCTT
T ss_pred EEEEcC-CC-CEEEEEEECCCCCc
Confidence 999985 45 69999999999843
No 55
>3jrx_A Acetyl-COA carboxylase 2; BC domain, soraphen A, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase, lipid synthesis; HET: S1A; 2.50A {Homo sapiens} PDB: 3jrw_A*
Probab=99.52 E-value=1.4e-13 Score=136.19 Aligned_cols=186 Identities=15% Similarity=0.152 Sum_probs=124.9
Q ss_pred HHHHHHhCCCcEEe-CcHHHHHHhcCHHHHHHHHHhccccCCCCCccCCCEEE--E--ec--------------------
Q 024006 27 LEEYRQTHPEVTVL-DPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLV--I--ER-------------------- 81 (274)
Q Consensus 27 l~~y~~~~P~v~Vi-dp~~ai~~l~dR~~~~~~L~~~~~~~~~~~I~~P~~~~--~--~~-------------------- 81 (274)
+++..+. -+++++ .++++++.+.||..+.+.+.+. |||+|++.. + +.
T Consensus 156 ~a~~le~-~Gi~~iGp~~~ai~~~~DK~~ak~ll~~a-------GVPvpp~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 227 (587)
T 3jrx_A 156 LPELLCK-NGVAFLGPPSEAMWALGDKIASTVVAQTL-------QVPTLPWSGSGLTVEWTEDDLQQGKRISVPEDVYDK 227 (587)
T ss_dssp HHHHHHT-TTCEESSCCHHHHHHHCSHHHHHHHHHHT-------TCCBCCBTTTTCCCCC------CCCCCCCCHHHHHT
T ss_pred HHHHHHH-CCCCeeCCCHHHHHHhCCHHHHHHHHHHc-------CCCCCCeecccccccccccccccccccccchhhccc
Confidence 3344444 478888 8999999999999999999986 899998754 0 00
Q ss_pred -CCCChhHHH-HhcCCCCcEEEeeCcCCCCccceeeEEEeChhhHhcc---------CCCeEEEecccCCCeEEEEEEEC
Q 024006 82 -DASSIPDVV-LKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKKL---------EPPLVLQEFVNHGGVLFKVYIVG 150 (274)
Q Consensus 82 -~~~~~~~~l-~~~~l~~P~VvKp~~a~Gs~~sh~m~iv~~~~~l~~l---------~~p~vvQefI~h~g~~~KV~VIG 150 (274)
...+..+.. ....++||+|+||..|+ ++.+|.++.++++|.+. +.++++|+||+ +++.+.|-|++
T Consensus 228 ~~v~s~eea~~~a~~iGyPvVVKp~~Gg---GGkGv~iV~s~eEL~~a~~~a~~~~~~~~vlVEeyI~-g~rei~V~vl~ 303 (587)
T 3jrx_A 228 GCVKDVDEGLEAAERIGFPLMIKASEGG---GGKGIRKAESAEDFPILFRQVQSEIPGSPIFLMKLAQ-HARHLEVQILA 303 (587)
T ss_dssp TSCCSHHHHHHHHHHHCSSEEEEETTCC---SSSSEEEECSTTTHHHHHHHHHHHSTTCCEEEEECCC-SCEEEEEEEEE
T ss_pred cccCCHHHHHHHHHhcCCeEEEEeCCCC---CCCCeEEeCCHHHHHHHHHHHHhhccCCCEEEEEecC-CCcEEEEEEEE
Confidence 011121111 12347899999999865 46789999999887642 57899999995 24999999998
Q ss_pred CE---EEEE-EEe-cCCCCcccccccCCceeeecCcccccccCCcCC-CCccccCCCChHHHHHHHHHHHHHhCCc-eeE
Q 024006 151 EA---IKVV-RRF-SLPDVTKQDLSTSAGVFRFPRVSCAAASADDAD-LDPCVAELPPRPLLERLAKELRRQLGLR-LFN 223 (274)
Q Consensus 151 ~~---v~~~-~R~-S~p~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~lA~~~~~~lGl~-l~G 223 (274)
|. ++.. .|. |.. ..+...... .+.. ++++. .+++.++|.++.+++|+. .++
T Consensus 304 D~~G~vv~l~~rd~siq--------------rr~qk~ie~---aPa~~l~~~~-----~~~i~~~A~~~a~alGy~G~~~ 361 (587)
T 3jrx_A 304 DQYGNAVSLFGRDCSIQ--------------RRHQKIVEE---APATIAPLAI-----FEFMEQCAIRLAKTVGYVSAGT 361 (587)
T ss_dssp CSSSCEEEEEEEEEEEE--------------SSSCEEEEE---ESCCSSCHHH-----HHHHHHHHHHHHHHHTCCEEEE
T ss_pred cCCCCEEEEeeeecccc--------------ccccceeEe---cCCCCCCHHH-----HHHHHHHHHHHHHHcCCcceeE
Confidence 74 3332 332 211 000000000 0111 12221 457889999999999997 445
Q ss_pred EeEEEeCCCCCeEEEEeccCCCCCC
Q 024006 224 LDIIREHGTRDQFYVIDINYFPGYG 248 (274)
Q Consensus 224 ~Dvi~~~~~g~~~~ViDVN~fPg~~ 248 (274)
+|++++. +| ++|++|+|.-|+-.
T Consensus 362 VEfl~d~-dG-~~yflEINpRl~~e 384 (587)
T 3jrx_A 362 VEYLYSQ-DG-SFHFLELNPRLQVE 384 (587)
T ss_dssp EEEEECS-SS-CEEEEEEESSCCTT
T ss_pred EEEEEeC-CC-CEEEEEEeCCCCCc
Confidence 9999975 45 69999999999843
No 56
>3vmm_A Alanine-anticapsin ligase BACD; ATP-grAsp domain, amino acid ligase, ATP binding; HET: ADP P0D; 2.50A {Bacillus subtilis}
Probab=99.52 E-value=3.3e-13 Score=130.43 Aligned_cols=181 Identities=14% Similarity=0.148 Sum_probs=120.8
Q ss_pred HHHHHHhCCCcEEeCcHHHHHHhcCHHHHHHHHHhccccCCCCCccCCCEEEEecCCCChhHHHHhcCCCCcEEEeeCcC
Q 024006 27 LEEYRQTHPEVTVLDPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVA 106 (274)
Q Consensus 27 l~~y~~~~P~v~Vidp~~ai~~l~dR~~~~~~L~~~~~~~~~~~I~~P~~~~~~~~~~~~~~~l~~~~l~~P~VvKp~~a 106 (274)
+.+..+.. +++ -+++++++.+.||..+.+.|++. ||++|++..+++ .++..+.. ..++||+|+||..|
T Consensus 117 ~a~~~e~~-Gi~-g~~~~ai~~~~DK~~~k~~l~~~-------GIpvp~~~~v~s-~ee~~~~~--~~lg~PvVVKP~~g 184 (474)
T 3vmm_A 117 MAKACERL-GLR-GAGVQAAENARDKNKMRDAFNKA-------GVKSIKNKRVTT-LEDFRAAL--EEIGTPLILKPTYL 184 (474)
T ss_dssp HHHHHHHT-TCC-CSCHHHHHHTTCHHHHHHHHHHT-------TSCCCCEEEECS-HHHHHHHH--HHSCSSEEEEESSC
T ss_pred HHHHHHHc-CCC-CCCHHHHHHhhCHHHHHHHHHHc-------CCCCCCeEEECC-HHHHHHHH--HHcCCCEEEEECCC
Confidence 33444442 455 78999999999999999999986 899999988853 22333322 35899999999986
Q ss_pred CCCccceeeEEEeChhhHhcc-------------------CCCeEEEecccCCC------------eEEEEEEECCEEEE
Q 024006 107 DGSAKSHELSLAYDQYSLKKL-------------------EPPLVLQEFVNHGG------------VLFKVYIVGEAIKV 155 (274)
Q Consensus 107 ~Gs~~sh~m~iv~~~~~l~~l-------------------~~p~vvQefI~h~g------------~~~KV~VIG~~v~~ 155 (274)
+ +|.+|.++.++++|.+. +.++++||||+..- ..+.+++.+++...
T Consensus 185 ~---gg~Gv~iv~~~eel~~a~~~~~~~~~~~~~~~a~~~~~~vlVEe~I~G~e~~~~q~~~~~~e~sv~~v~~dg~~~~ 261 (474)
T 3vmm_A 185 A---SSIGVTLITDTETAEDEFNRVNDYLKSINVPKAVTFEAPFIAEEFLQGEYGDWYQTEGYSDYISIEGIMADGEYFP 261 (474)
T ss_dssp C---TTTTCEEECCTTSHHHHHHHHHHHHTTSCCCTTCCCSCSEEEEECCCBCHHHHCSSSSSCSEEEEEEEEETTEEEE
T ss_pred C---cCceEEEECCHHHHHHHHHHHHHHHhhccccccccCCCeEEEEeCCCCceeeeeecccccceeEEEEEEECCeEEE
Confidence 5 35689999999887531 46899999997321 22444666666543
Q ss_pred E--EEecCCCCcccccccCCceeeecCcccccccCCcCCCCccccCCCChHHHHHHHHHHHHHhCCceeE--EeEEEeCC
Q 024006 156 V--RRFSLPDVTKQDLSTSAGVFRFPRVSCAAASADDADLDPCVAELPPRPLLERLAKELRRQLGLRLFN--LDIIREHG 231 (274)
Q Consensus 156 ~--~R~S~p~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lA~~~~~~lGl~l~G--~Dvi~~~~ 231 (274)
. .++. +.. .. . ..... .+..++++. .+++.++|.++.+++|+.-.+ +|++++.
T Consensus 262 v~i~~~~-~~~---~~--~------~~~~~-----~Pa~l~~~~-----~~~l~~~a~~~~~alG~~g~~~~vef~~~~- 318 (474)
T 3vmm_A 262 IAIHDKT-PQI---GF--T------ETSHI-----TPSILDEEA-----KKKIVEAAKKANEGLGLQNCATHTEIKLMK- 318 (474)
T ss_dssp EEEEEEC-CCB---TT--B------CCEEE-----ESCCCCHHH-----HHHHHHHHHHHHHHHTCCSEEEEEEEEEEG-
T ss_pred EEEEeec-cCC---Cc--c------ceEEE-----ECCCCCHHH-----HHHHHHHHHHHHHHcCCCCccEEEEEEEcC-
Confidence 2 2221 110 00 0 00000 011222211 357899999999999999776 9999985
Q ss_pred CCCeEEEEeccCCCC
Q 024006 232 TRDQFYVIDINYFPG 246 (274)
Q Consensus 232 ~g~~~~ViDVN~fPg 246 (274)
+| +++++|+|.-||
T Consensus 319 dg-~~~~iEvNpR~~ 332 (474)
T 3vmm_A 319 NR-EPGLIESAARFA 332 (474)
T ss_dssp GG-EEEEEEEESSCC
T ss_pred CC-CEEEEEEeCCCC
Confidence 45 699999998776
No 57
>2qk4_A Trifunctional purine biosynthetic protein adenosi; purine synthesis, enzyme, protein-ATP complex, structural GE structural genomics consortium, SGC; HET: ATP; 2.45A {Homo sapiens}
Probab=99.50 E-value=1.9e-13 Score=130.37 Aligned_cols=190 Identities=11% Similarity=0.060 Sum_probs=119.0
Q ss_pred HHHHHHHhCCCcEEe-CcHHHHHHhcCHHHHHHHHHhccccCCCCCccCCCEEEEecCCCChhHHHHhcCCCCc-EEEee
Q 024006 26 ILEEYRQTHPEVTVL-DPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLP-LVAKP 103 (274)
Q Consensus 26 ~l~~y~~~~P~v~Vi-dp~~ai~~l~dR~~~~~~L~~~~~~~~~~~I~~P~~~~~~~~~~~~~~~l~~~~l~~P-~VvKp 103 (274)
.+.+..++ -+++++ +++++++.+.||..+.+.|++. ||++|++..++ +.+++.+.+ ..++|| +|+||
T Consensus 103 ~~~~~l~~-~gi~~~g~~~~~~~~~~dK~~~k~~l~~~-------gip~p~~~~~~-~~~~~~~~~--~~~g~P~vvvKp 171 (452)
T 2qk4_A 103 GIVGNLRS-AGVQCFGPTAEAAQLESSKRFAKEFMDRH-------GIPTAQWKAFT-KPEEACSFI--LSADFPALVVKA 171 (452)
T ss_dssp THHHHHHH-TTCCEESCCTTTTHHHHBHHHHHHHHHHT-------TCCBCCEEEES-SHHHHHHHH--HHCSSCEEEEEE
T ss_pred HHHHHHHh-cCCcEeCcCHHHHHHhcCHHHHHHHHHHC-------CCCCCCeEEEC-CHHHHHHHH--HhCCCCeEEEEe
Confidence 33344444 367777 8899999999999999999986 89999999885 222333333 247899 99999
Q ss_pred CcCCCCccceeeEEEeChhhHhcc-------------CCCeEEEecccCCCeEEEEEEEC--CEEEEE--EEecCCCCcc
Q 024006 104 LVADGSAKSHELSLAYDQYSLKKL-------------EPPLVLQEFVNHGGVLFKVYIVG--EAIKVV--RRFSLPDVTK 166 (274)
Q Consensus 104 ~~a~Gs~~sh~m~iv~~~~~l~~l-------------~~p~vvQefI~h~g~~~KV~VIG--~~v~~~--~R~S~p~~~~ 166 (274)
..++ +|.++.++.+++++.+. ..++++||||+ |.++.|.+++ +.+... .|..-...
T Consensus 172 ~~~~---gg~Gv~~v~~~~el~~~~~~~~~~~~~g~~~~~~lvEe~i~--G~E~sv~~~~dG~~~~~~~~~~~~~~~~-- 244 (452)
T 2qk4_A 172 SGLA---AGKGVIVAKSKEEACKAVQEIMQEKAFGAAGETIVIEELLD--GEEVSCLCFTDGKTVAPMPPAQDHKRLL-- 244 (452)
T ss_dssp SBC------CCEEECSSHHHHHHHHHHHTTC-------CCEEEEECCC--SEEEEEEEEECSSCEEECCCBEEEEEEE--
T ss_pred CCCC---CCCCEEEeCCHHHHHHHHHHHHhhhhccCCCCeEEEEECCC--CCeEEEEEEECCCEEEEcceeeeccccc--
Confidence 8864 46799999999887541 35899999996 8999999884 324321 11100000
Q ss_pred cccccCCceeeecCcccccccCCcCC-CCccccCCCChHHHH-HHHHHHHHHh---CCc---eeEEeEEEeCCCCCeEEE
Q 024006 167 QDLSTSAGVFRFPRVSCAAASADDAD-LDPCVAELPPRPLLE-RLAKELRRQL---GLR---LFNLDIIREHGTRDQFYV 238 (274)
Q Consensus 167 ~~~~~~~g~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~lA~~~~~~l---Gl~---l~G~Dvi~~~~~g~~~~V 238 (274)
+. ..+ .++... +.. .+.. ++++. .+++. ++|.++.++| |+. ++++|++++. +| +++
T Consensus 245 -~~--~~~-~~~g~~---~~~-~P~~~l~~~~-----~~~~~~~~a~~~~~~l~~~g~~~~G~~~ve~~~~~-~g--~~v 308 (452)
T 2qk4_A 245 -EG--DGG-PNTGGM---GAY-CPAPQVSNDL-----LLKIKDTVLQRTVDGMQQEGTPYTGILYAGIMLTK-NG--PKV 308 (452)
T ss_dssp -TT--TEE-EEEEEE---EEE-ESCTTCCHHH-----HHHHHHHTHHHHHHHHHHTTCCCCEEEEEEEEEET-TE--EEE
T ss_pred -CC--CCC-CCCCCc---eee-ccCccCCHHH-----HHHHHHHHHHHHHHHHHHcCCCceeEEEEEEEEeC-CC--cEE
Confidence 00 000 000000 000 0111 22111 23343 6787888776 444 5779999985 34 899
Q ss_pred EeccCCCCCCC
Q 024006 239 IDINYFPGYGK 249 (274)
Q Consensus 239 iDVN~fPg~~g 249 (274)
+|+|.-||-.+
T Consensus 309 iEiN~R~~~~~ 319 (452)
T 2qk4_A 309 LEFNCRFGDPE 319 (452)
T ss_dssp EEEESSCCTTT
T ss_pred EEEeccCCCcH
Confidence 99999999544
No 58
>1a9x_A Carbamoyl phosphate synthetase (large chain); amidotransferase, thioester; HET: CYG ADP; 1.80A {Escherichia coli} SCOP: a.92.1.1 c.24.1.1 c.30.1.1 c.30.1.1 d.142.1.2 d.142.1.2 PDB: 1ce8_A* 1m6v_A* 1c30_A* 1bxr_A* 1c3o_A* 1cs0_A* 1jdb_B* 1kee_A* 1t36_A*
Probab=99.48 E-value=7.8e-13 Score=139.04 Aligned_cols=176 Identities=15% Similarity=0.232 Sum_probs=121.5
Q ss_pred CcEEe-CcHHHHHHhcCHHHHHHHHHhccccCCCCCccCCCEEEEecCCCChhHHHHhcCCCCcEEEeeCcCCCCcccee
Q 024006 36 EVTVL-DPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHE 114 (274)
Q Consensus 36 ~v~Vi-dp~~ai~~l~dR~~~~~~L~~~~~~~~~~~I~~P~~~~~~~~~~~~~~~l~~~~l~~P~VvKp~~a~Gs~~sh~ 114 (274)
++.++ .++++++.+.||..+.+.|.+. ||++|++..+++ .++..+.. ..++||+|+||..+.| +.+
T Consensus 112 gv~~~G~~~~ai~~~~DK~~~k~~l~~~-------Gipvp~~~~v~~-~~ea~~~~--~~ig~PvVvKp~~~~G---g~G 178 (1073)
T 1a9x_A 112 GVTMIGATADAIDKAEDRRRFDVAMKKI-------GLETARSGIAHT-MEEALAVA--ADVGFPCIIRPSFTMG---GSG 178 (1073)
T ss_dssp TCEECSSCHHHHHHHHSHHHHHHHHHHT-------TCCCCSEEEESS-HHHHHHHH--HHHCSSEEEEETTCCT---TTT
T ss_pred CCeeeCCCHHHHHHhhCHHHHHHHHHHC-------CcCCCCEEEECC-HHHHHHHH--HHcCCCEEEEECCCCC---CCc
Confidence 67888 8999999999999999999996 899999998852 22233322 2478999999998654 568
Q ss_pred eEEEeChhhHhcc---------CCCeEEEecccCCCeEEEEEEECCE---EEEE--EEecCCCCcccccccCCceeeecC
Q 024006 115 LSLAYDQYSLKKL---------EPPLVLQEFVNHGGVLFKVYIVGEA---IKVV--RRFSLPDVTKQDLSTSAGVFRFPR 180 (274)
Q Consensus 115 m~iv~~~~~l~~l---------~~p~vvQefI~h~g~~~KV~VIG~~---v~~~--~R~S~p~~~~~~~~~~~g~~~~~~ 180 (274)
+.++.++++|.+. ..++++||||+ +.+++.|-|++|. ++.. ..+--|. .+. .| ..
T Consensus 179 v~iv~~~eel~~~~~~~~~~~~~~~vlvEe~I~-G~~E~~v~v~~d~~g~~v~~~~~e~~dp~----~v~--~g----~s 247 (1073)
T 1a9x_A 179 GGIAYNREEFEEICARGLDLSPTKELLIDESLI-GWKEYEMEVVRDKNDNCIIVCSIENFDAM----GIH--TG----DS 247 (1073)
T ss_dssp CEEESSHHHHHHHHHHHHHHCTTSCEEEEECCT-TSEEEEEEEEECTTCCEEEEEEEEESSCT----TSC--GG----GS
T ss_pred eEEeCCHHHHHHHHHHHHhhCCCCcEEEEEccC-CCeEEEEEEEEeCCCCEEEEEEEecccCC----ccc--cC----cE
Confidence 8899999888652 35799999996 2379999999863 3322 1111110 000 00 00
Q ss_pred cccccccCCcC-CCCccccCCCChHHHHHHHHHHHHHhCCc--eeEEeEEEeCCCCCeEEEEeccCCCC
Q 024006 181 VSCAAASADDA-DLDPCVAELPPRPLLERLAKELRRQLGLR--LFNLDIIREHGTRDQFYVIDINYFPG 246 (274)
Q Consensus 181 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~lA~~~~~~lGl~--l~G~Dvi~~~~~g~~~~ViDVN~fPg 246 (274)
.. ..+. .++++. .++++++|.++.++||+. .+++|++++.++| +++|+|||.-++
T Consensus 248 ~~-----~~Pa~~l~~~~-----~~~l~~~a~~i~~~lg~~~G~~~vdf~~~~~~g-~~~viEiNpR~~ 305 (1073)
T 1a9x_A 248 IT-----VAPAQTLTDKE-----YQIMRNASMAVLREIGVETGGSNVQFAVNPKNG-RLIVIEMNPRVS 305 (1073)
T ss_dssp CE-----EESCCSCCHHH-----HHHHHHHHHHHHHHHTCCSEEEEEEEEECTTTC-CEEEEEEESSCC
T ss_pred EE-----EecCCCCCHHH-----HHHHHHHHHHHHHHcCcccCceEEEEEEECCCC-CEEEEEecCCCC
Confidence 00 0011 122111 357899999999999998 8889999986445 699999995444
No 59
>1a9x_A Carbamoyl phosphate synthetase (large chain); amidotransferase, thioester; HET: CYG ADP; 1.80A {Escherichia coli} SCOP: a.92.1.1 c.24.1.1 c.30.1.1 c.30.1.1 d.142.1.2 d.142.1.2 PDB: 1ce8_A* 1m6v_A* 1c30_A* 1bxr_A* 1c3o_A* 1cs0_A* 1jdb_B* 1kee_A* 1t36_A*
Probab=99.46 E-value=3.4e-13 Score=141.79 Aligned_cols=181 Identities=18% Similarity=0.337 Sum_probs=116.1
Q ss_pred HHHHHHhCCCcEEe-CcHHHHHHhcCHHHHHHHHHhccccCCCCCccCCCEEEEecCCCChhHHHHhcCCCCcEEEeeCc
Q 024006 27 LEEYRQTHPEVTVL-DPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLV 105 (274)
Q Consensus 27 l~~y~~~~P~v~Vi-dp~~ai~~l~dR~~~~~~L~~~~~~~~~~~I~~P~~~~~~~~~~~~~~~l~~~~l~~P~VvKp~~ 105 (274)
+.+.++. -+++++ +++++++.+.||..+.+.|.++ ||++|++..+. +.+++.+... .++||+|+||..
T Consensus 650 la~~Le~-~Gi~i~G~~~~ai~~~~DK~~~~~ll~~~-------GIp~P~~~~~~-s~eea~~~~~--~ig~PvvVKP~~ 718 (1073)
T 1a9x_A 650 LARALEA-AGVPVIGTSPDAIDRAEDRERFQHAVERL-------KLKQPANATVT-AIEMAVEKAK--EIGYPLVVRASY 718 (1073)
T ss_dssp THHHHHH-TTCCBCSSCHHHHHHHHSHHHHHHHHHHH-------TCCCCCEEECC-SHHHHHHHHH--HHCSSEEEEC--
T ss_pred HHHHHHH-CCCCeeCCCHHHHHHhhCHHHHHHHHHHc-------CcCCCCceEEC-CHHHHHHHHH--HcCCCEEEEECC
Confidence 3444444 367777 8899999999999999999987 89999999885 2223333232 478999999998
Q ss_pred CCCCccceeeEEEeChhhHhcc---------CCCeEEEecccCCCe-EEEEEEECCE--EEE--EEEecCC-CCcccccc
Q 024006 106 ADGSAKSHELSLAYDQYSLKKL---------EPPLVLQEFVNHGGV-LFKVYIVGEA--IKV--VRRFSLP-DVTKQDLS 170 (274)
Q Consensus 106 a~Gs~~sh~m~iv~~~~~l~~l---------~~p~vvQefI~h~g~-~~KV~VIG~~--v~~--~~R~S~p-~~~~~~~~ 170 (274)
+. ++.+|.++.++++|... +.|+++||||+ |. ++.|-+++|. +.. ..+.-.+ ++..++
T Consensus 719 ~~---gG~Gv~iv~~~~el~~~~~~a~~~~~~~~vlvEefI~--g~~E~~V~~l~d~~~v~~~~i~e~~~~~g~~~gd-- 791 (1073)
T 1a9x_A 719 VL---GGRAMEIVYDEADLRRYFQTAVSVSNDAPVLLDHFLD--DAVEVDVDAICDGEMVLIGGIMEHIEQAGVHSGD-- 791 (1073)
T ss_dssp --------CEEEECSHHHHHHHHHHCC--------EEEBCCT--TCEEEEEEEEECSSCEEEEEEEEESSCTTSCGGG--
T ss_pred CC---CCCCeEEECCHHHHHHHHHHHHhhCCCCcEEEEEccC--CCcEEEEEEEEECCeEEEEeeEEEEeccCCccCC--
Confidence 64 46799999999988642 35899999996 44 8888888543 322 2222111 110000
Q ss_pred cCCceeeecCcccccccCCcCCCCccccCCCChHHHHHHHHHHHHHhCCc-eeEEeEEEeCCCCCeEEEEeccCCCC
Q 024006 171 TSAGVFRFPRVSCAAASADDADLDPCVAELPPRPLLERLAKELRRQLGLR-LFNLDIIREHGTRDQFYVIDINYFPG 246 (274)
Q Consensus 171 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lA~~~~~~lGl~-l~G~Dvi~~~~~g~~~~ViDVN~fPg 246 (274)
... ......++++. .++++++|.++.++||+. ++++|+++++ | ++||+|||.-||
T Consensus 792 ---------~~~----~~P~~~l~~~~-----~~~i~~~a~~i~~aLg~~G~~~vdf~v~~--~-~~~viEvNpR~~ 847 (1073)
T 1a9x_A 792 ---------SAC----SLPAYTLSQEI-----QDVMRQQVQKLAFELQVRGLMNVQFAVKN--N-EVYLIEVNPRAA 847 (1073)
T ss_dssp ---------CCE----EESCSSCCHHH-----HHHHHHHHHHHHHHTTCCEEEEEEEEECS--S-CEEEEEEECSCC
T ss_pred ---------ceE----EecCCCCCHHH-----HHHHHHHHHHHHHHcCCcceEEEEEEEEC--C-eEEEEEEECCCc
Confidence 000 00001122211 457899999999999994 8889999963 3 589999999998
No 60
>1w96_A ACC, acetyl-coenzyme A carboxylase; ligase, obesity, diabetes, fatty acid metabolism, structure-based drug design; HET: S1A; 1.8A {Saccharomyces cerevisiae} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1w93_A
Probab=99.46 E-value=6.5e-13 Score=130.39 Aligned_cols=179 Identities=14% Similarity=0.139 Sum_probs=116.8
Q ss_pred cEEeC-cHHHHHHhcCHHHHHHHHHhccccCCCCCccCCCEEEE-----ecC-----------------CCChhHHHH-h
Q 024006 37 VTVLD-PPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVI-----ERD-----------------ASSIPDVVL-K 92 (274)
Q Consensus 37 v~Vid-p~~ai~~l~dR~~~~~~L~~~~~~~~~~~I~~P~~~~~-----~~~-----------------~~~~~~~l~-~ 92 (274)
+.++- +.++++.+.||..+.+.++++ ||++|++..+ ..+ ..+..+... .
T Consensus 158 i~~~gp~~~a~~~~~dK~~~k~~l~~~-------GIp~p~~~~~~~~~~~~~~~~~l~~ip~~~~~~~~~~~~~e~~~~~ 230 (554)
T 1w96_A 158 VIFIGPPGNAMRSLGDKISSTIVAQSA-------KVPCIPWSGTGVDTVHVDEKTGLVSVDDDIYQKGCCTSPEDGLQKA 230 (554)
T ss_dssp CEESSCCHHHHHHSCSHHHHHHHHHHT-------TCCBCCBTTTTCCCCEECTTTCCEECCHHHHGGGSCSSHHHHHHHH
T ss_pred EEEeCCCHHHHHHHhCHHHHHHHHHHC-------CCCcCCccccccccccccccccccccccccccccCCCCHHHHHHHH
Confidence 54544 467999999999999999986 8899987543 000 012222111 1
Q ss_pred cCCCCcEEEeeCcCCCCccceeeEEEeChhhHhcc---------CCCeEEEecccCCCeEEEEEEECC---EEEEE-EEe
Q 024006 93 AGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKKL---------EPPLVLQEFVNHGGVLFKVYIVGE---AIKVV-RRF 159 (274)
Q Consensus 93 ~~l~~P~VvKp~~a~Gs~~sh~m~iv~~~~~l~~l---------~~p~vvQefI~h~g~~~KV~VIG~---~v~~~-~R~ 159 (274)
..++||+|+||..++ +|.+|.++.++++|... ..++++||||+ +|+.+.|.++++ +++.. .|.
T Consensus 231 ~~~g~PvVvKp~~g~---gg~Gv~~v~~~~el~~a~~~~~~~~~~~~vlvEe~i~-g~~e~sv~vl~d~~G~vv~l~~~~ 306 (554)
T 1w96_A 231 KRIGFPVMIKASEGG---GGKGIRQVEREEDFIALYHQAANEIPGSPIFIMKLAG-RARHLEVQLLADQYGTNISLFGRD 306 (554)
T ss_dssp HHHCSSEEEEETTCC---TTTTEEEECSHHHHHHHHHHHHHHSTTCCEEEEECCC-SCEEEEEEEEECTTSCEEEEEEEE
T ss_pred HHcCCCEEEEECCCC---CCceEEEECCHHHHHHHHHHHHhhccCCCEEEEEecC-CCcEEEEEEEEcCCCCEEEEeeee
Confidence 247899999999865 46789999999887642 56899999997 468999999975 34432 221
Q ss_pred -cCCCCcccccccCCceeeecCcccccccCCcCCCCccccCCCChHHHHHHHHHHHHHhCCc-eeEEeEEEeCCCCCeEE
Q 024006 160 -SLPDVTKQDLSTSAGVFRFPRVSCAAASADDADLDPCVAELPPRPLLERLAKELRRQLGLR-LFNLDIIREHGTRDQFY 237 (274)
Q Consensus 160 -S~p~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lA~~~~~~lGl~-l~G~Dvi~~~~~g~~~~ 237 (274)
+... ....+- ..+ . ...++++. .+++.++|.++.++||+. ++++|++++..+| ++|
T Consensus 307 ~~~~~--------~~~k~~--~~~--P----~~~l~~~~-----~~~i~~~a~~~~~alg~~G~~~ve~~~~~~dg-~~~ 364 (554)
T 1w96_A 307 CSVQR--------RHQKII--EEA--P----VTIAKAET-----FHEMEKAAVRLGKLVGYVSAGTVEYLYSHDDG-KFY 364 (554)
T ss_dssp EEEEE--------TTEEEE--EEE--S----CCSSCHHH-----HHHHHHHHHHHHHHHTCCEEEEEEEEECTTTC-CEE
T ss_pred eeeEe--------ecccee--eeC--C----CcCCCHHH-----HHHHHHHHHHHHHHcCCcceEEEEEEEECCCC-CEE
Confidence 2100 000000 000 0 00111111 356889999999999995 6679999973344 589
Q ss_pred EEeccCCCCCC
Q 024006 238 VIDINYFPGYG 248 (274)
Q Consensus 238 ViDVN~fPg~~ 248 (274)
++|+|.-+|-.
T Consensus 365 ~iEiN~R~~g~ 375 (554)
T 1w96_A 365 FLELNPRLQVE 375 (554)
T ss_dssp EEEEECSCCTT
T ss_pred EEEeeCCCCcc
Confidence 99999988744
No 61
>3n6r_A Propionyl-COA carboxylase, alpha subunit; protein complex, biotin-dependent carboxylase, ligase; HET: BTI; 3.20A {Ruegeria pomeroyi}
Probab=99.42 E-value=3.7e-13 Score=135.43 Aligned_cols=184 Identities=15% Similarity=0.251 Sum_probs=87.3
Q ss_pred HHHHHHhCCCcEEe-CcHHHHHHhcCHHHHHHHHHhccccCCCCCccCCCEE--EEecCCCChhHHHHhcCCCCcEEEee
Q 024006 27 LEEYRQTHPEVTVL-DPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQL--VIERDASSIPDVVLKAGLTLPLVAKP 103 (274)
Q Consensus 27 l~~y~~~~P~v~Vi-dp~~ai~~l~dR~~~~~~L~~~~~~~~~~~I~~P~~~--~~~~~~~~~~~~l~~~~l~~P~VvKp 103 (274)
+.+..+++ +++++ .++++++.+.||..+.+.|++. ||++|++. .+. +.+++.+.. ..++||+|+||
T Consensus 91 ~a~~le~~-Gi~~iGp~~~ai~~~~dK~~~k~~l~~~-------GVPvpp~~~~~~~-s~~e~~~~a--~~igyPvVvKp 159 (681)
T 3n6r_A 91 FAEALEAE-GVIFVGPPKGAIEAMGDKITSKKIAQEA-------NVSTVPGYMGLIE-DADEAVKIS--NQIGYPVMIKA 159 (681)
T ss_dssp HHHHHHTT-TCCCSSSCHHHHHHTTSHHHHHHHHHTT-------TCCCCCC-----------------------------
T ss_pred HHHHHHHc-CCceECCCHHHHHHhCCHHHHHHHHHHc-------CcCcCCccccCcC-CHHHHHHHH--HhcCCcEEEEE
Confidence 34444543 67777 8899999999999999999886 89999975 343 333333322 35799999999
Q ss_pred CcCCCCccceeeEEEeChhhHhcc-------------CCCeEEEecccCCCeEEEEEEECCE---EEEE-EEe-cCCCCc
Q 024006 104 LVADGSAKSHELSLAYDQYSLKKL-------------EPPLVLQEFVNHGGVLFKVYIVGEA---IKVV-RRF-SLPDVT 165 (274)
Q Consensus 104 ~~a~Gs~~sh~m~iv~~~~~l~~l-------------~~p~vvQefI~h~g~~~KV~VIG~~---v~~~-~R~-S~p~~~ 165 (274)
..|+ ++.+|.++.++++|.+. +.++++||||+. ++.+.|.|++|. ++.. .|. |...
T Consensus 160 ~~gg---ggkGv~iv~~~~el~~a~~~~~~ea~~~fg~~~vlvEe~I~g-~rei~V~v~~d~~G~vv~l~~rd~s~qr-- 233 (681)
T 3n6r_A 160 SAGG---GGKGMRIAWNDQEAREGFQSSKNEAANSFGDDRIFIEKFVTQ-PRHIEIQVLCDSHGNGIYLGERECSIQR-- 233 (681)
T ss_dssp ----------------------------------------------CCS-CEEEEEEEECCSSSCCEEEEEEECCCEE--
T ss_pred CCCC---CCCCEEEECCHHHHHHHHHHHHHHHHHhCCCCcEEEEeccCC-CcEEEEEEEEeCCCCEEEEeeeecceec--
Confidence 9864 46789999999887642 347999999962 389999999864 3332 333 2100
Q ss_pred ccccccCCceeeecCcccccccCCcCCCCccccCCCChHHHHHHHHHHHHHhCCcee-EEeEEEeCCCCCeEEEEeccCC
Q 024006 166 KQDLSTSAGVFRFPRVSCAAASADDADLDPCVAELPPRPLLERLAKELRRQLGLRLF-NLDIIREHGTRDQFYVIDINYF 244 (274)
Q Consensus 166 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lA~~~~~~lGl~l~-G~Dvi~~~~~g~~~~ViDVN~f 244 (274)
. +... ...+....++++. .+++.++|.++.+++|+.-+ .+|++++. +| ++|++|+|.-
T Consensus 234 ------~------~~k~--~e~~Pa~~l~~~~-----~~~l~~~a~~~~~alg~~G~~~vEf~~d~-dg-~~~~lEiNpR 292 (681)
T 3n6r_A 234 ------R------NQKV--VEEAPSPFLDEAT-----RRAMGEQAVALAKAVGYASAGTVEFIVDG-QK-NFYFLEMNTR 292 (681)
T ss_dssp ------T------TEEC--EEEESCSSCCHHH-----HHHHHHHHHHHHHTTTCCSEEEEEEEECT-TS-CCCCCEEECS
T ss_pred ------c------CccE--EEecCCCCCCHHH-----HHHHHHHHHHHHHHcCCCceEEEEEEEeC-CC-CEEEEecccc
Confidence 0 0000 0000000122221 35688999999999999844 49999985 45 6899999999
Q ss_pred CCCC
Q 024006 245 PGYG 248 (274)
Q Consensus 245 Pg~~ 248 (274)
|+-.
T Consensus 293 ~~~~ 296 (681)
T 3n6r_A 293 LQVE 296 (681)
T ss_dssp CCTT
T ss_pred cCCC
Confidence 9744
No 62
>3u9t_A MCC alpha, methylcrotonyl-COA carboxylase, alpha-subunit; biotin carboxylase, carboxyltransferase, BT domain, BCCP DOM ligase; 2.90A {Pseudomonas aeruginosa} PDB: 3u9s_A
Probab=99.40 E-value=6e-13 Score=133.77 Aligned_cols=183 Identities=10% Similarity=0.166 Sum_probs=120.0
Q ss_pred HHHHHhCCCcEEe-CcHHHHHHhcCHHHHHHHHHhccccCCCCCccCCCEEEE-ecCCCChhHHHHhcCCCCcEEEeeCc
Q 024006 28 EEYRQTHPEVTVL-DPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVI-ERDASSIPDVVLKAGLTLPLVAKPLV 105 (274)
Q Consensus 28 ~~y~~~~P~v~Vi-dp~~ai~~l~dR~~~~~~L~~~~~~~~~~~I~~P~~~~~-~~~~~~~~~~l~~~~l~~P~VvKp~~ 105 (274)
.+..++ -+++++ .++++++.+.||..+.+.|.+. ||++|++... -.+.+++.+.. ..++||+|+||..
T Consensus 118 a~~le~-~Gi~~iGp~~~ai~~~~DK~~~k~~l~~~-------GVpvpp~~~~~~~s~~e~~~~a--~~igyPvvvKp~~ 187 (675)
T 3u9t_A 118 ARACEE-AGLLFLGPPAAAIDAMGSKSAAKALMEEA-------GVPLVPGYHGEAQDLETFRREA--GRIGYPVLLKAAA 187 (675)
T ss_dssp HHHHHT-TTCEESSCCHHHHHHHTSHHHHHHHHHHT-------TCCBCCCCCSCCCCTTHHHHHH--HHSCSSBCCBCCC
T ss_pred HHHHHH-cCCceeCCCHHHHHHhchHHHHHHHHHHc-------CcCcCCccccCCCCHHHHHHHH--HhCCCcEEEEECC
Confidence 333444 367776 7899999999999999999986 8999987652 12333444333 3478999999998
Q ss_pred CCCCccceeeEEEeChhhHhcc-------------CCCeEEEecccCCCeEEEEEEECC---EEEEE-EEe-cCCCCccc
Q 024006 106 ADGSAKSHELSLAYDQYSLKKL-------------EPPLVLQEFVNHGGVLFKVYIVGE---AIKVV-RRF-SLPDVTKQ 167 (274)
Q Consensus 106 a~Gs~~sh~m~iv~~~~~l~~l-------------~~p~vvQefI~h~g~~~KV~VIG~---~v~~~-~R~-S~p~~~~~ 167 (274)
|+ ++.+|.++.++++|.+. +.++++||||+. .+.+.|-|++| +++.. .|. |...
T Consensus 188 G~---Gg~Gv~iv~~~~el~~a~~~~~~ea~~~fg~~~vlvEeyI~g-~reiev~v~~d~~G~vv~l~~rd~s~qr---- 259 (675)
T 3u9t_A 188 GG---GGKGMKVVEREAELAEALSSAQREAKAAFGDARMLVEKYLLK-PRHVEIQVFADRHGHCLYLNERDCSIQR---- 259 (675)
T ss_dssp ---------CCCBCCTTTHHHHHSCCCC--------CCCBCCBCCSS-CBCEEEEEEECSSSCEEEEEEEECCCBS----
T ss_pred CC---CCccEEEECCHHHHHHHHHHHHHHHHHhcCCCcEEEEeecCC-CcEEEEEEEEcCCCCEEEEeccccceee----
Confidence 64 46789999999887642 357999999963 37888888865 34443 333 2110
Q ss_pred ccccCCceeeecCcccccccCCcCCCCccccCCCChHHHHHHHHHHHHHhCCc-eeEEeEEEeCCCCCeEEEEeccCCCC
Q 024006 168 DLSTSAGVFRFPRVSCAAASADDADLDPCVAELPPRPLLERLAKELRRQLGLR-LFNLDIIREHGTRDQFYVIDINYFPG 246 (274)
Q Consensus 168 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lA~~~~~~lGl~-l~G~Dvi~~~~~g~~~~ViDVN~fPg 246 (274)
. +... ...+....++++. .+++.++|.++.+++|+. .+++|++++. +| ++|++|+|.-|+
T Consensus 260 ----~------~qk~--ie~~Pa~~l~~~~-----~~~l~~~a~~~~~alg~~G~~~vEf~~~~-dG-~~~~iEiNpR~~ 320 (675)
T 3u9t_A 260 ----R------HQKV--VEEAPAPGLGAEL-----RRAMGEAAVRAAQAIGYVGAGTVEFLLDE-RG-QFFFMEMNTRLQ 320 (675)
T ss_dssp ----S------SSBC--EEEESCSSCCHHH-----HHHHHHHHHHHHHHTTCCSEEEEECCBCT-TS-CBCBCEEESSCC
T ss_pred ----c------cceE--EEECCCCCCCHHH-----HHHHHHHHHHHHHHcCCccceEEEEEEcC-CC-CEEEEecccccc
Confidence 0 0000 0000000122211 356889999999999996 6669999985 45 689999999997
Q ss_pred C
Q 024006 247 Y 247 (274)
Q Consensus 247 ~ 247 (274)
-
T Consensus 321 ~ 321 (675)
T 3u9t_A 321 V 321 (675)
T ss_dssp T
T ss_pred C
Confidence 4
No 63
>2qf7_A Pyruvate carboxylase protein; multi-domain, multi-functional, biotin-dependent, ligase; HET: KCX COA AGS; 2.00A {Rhizobium etli} PDB: 3tw6_A* 3tw7_A*
Probab=99.38 E-value=1.9e-12 Score=136.98 Aligned_cols=185 Identities=14% Similarity=0.177 Sum_probs=87.9
Q ss_pred HHHHHHhCCCcEEe-CcHHHHHHhcCHHHHHHHHHhccccCCCCCccCCCEE--EEecCCCChhHHHHhcCCCCcEEEee
Q 024006 27 LEEYRQTHPEVTVL-DPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQL--VIERDASSIPDVVLKAGLTLPLVAKP 103 (274)
Q Consensus 27 l~~y~~~~P~v~Vi-dp~~ai~~l~dR~~~~~~L~~~~~~~~~~~I~~P~~~--~~~~~~~~~~~~l~~~~l~~P~VvKp 103 (274)
+.+..+. -+++++ .++++++.+.||..+.+.+.+. ||++|++. .++ +.+++.+.. ..++||+|+||
T Consensus 110 ~a~~le~-~Gi~~iGp~~~ai~~~~DK~~~k~~l~~~-------GIPvp~~~~~~v~-s~eea~~~a--~~igyPvVVKp 178 (1165)
T 2qf7_A 110 FVDACNK-AGIIFIGPKADTMRQLGNKVAARNLAISV-------GVPVVPATEPLPD-DMAEVAKMA--AAIGYPVMLKA 178 (1165)
T ss_dssp HHHHHHH-TTCEESSCCHHHHHHHHSHHHHHHHHHHT-------TCCBC-------------------------------
T ss_pred HHHHHHH-cCCceECCCHHHHHHHCCHHHHHHHHHHc-------CCCCCCeeCcCCC-CHHHHHHHH--HhcCCCEEEEe
Confidence 3344444 367775 6789999999999999999986 89999987 443 222333322 35789999999
Q ss_pred CcCCCCccceeeEEEeChhhHhcc-------------CCCeEEEecccCCCeEEEEEEECCE---EEEE-EEe-cCCCCc
Q 024006 104 LVADGSAKSHELSLAYDQYSLKKL-------------EPPLVLQEFVNHGGVLFKVYIVGEA---IKVV-RRF-SLPDVT 165 (274)
Q Consensus 104 ~~a~Gs~~sh~m~iv~~~~~l~~l-------------~~p~vvQefI~h~g~~~KV~VIG~~---v~~~-~R~-S~p~~~ 165 (274)
..++ +|.+|.++.++++|.+. +.++++||||+ +|+.+.|.+++|. ++.. .|. +.
T Consensus 179 ~~g~---GG~Gv~iv~s~eEL~~a~~~~~~~a~~~fg~~~vlVEefI~-gg~EisV~vl~D~~G~vv~l~~r~~s~---- 250 (1165)
T 2qf7_A 179 SWGG---GGRGMRVIRSEADLAKEVTEAKREAMAAFGKDEVYLEKLVE-RARHVESQILGDTHGNVVHLFERDCSV---- 250 (1165)
T ss_dssp --------------------------------------------CCCS-SEEEEEEEEEECTTSCEEEEEEEEEEE----
T ss_pred CCCC---CCCCEEEECCHHHHHHHHHHHHHHHHhhcCCCcEEEEEecc-CCcEEEEEEEEcCCCcEEEEEeecccc----
Confidence 9864 46789999999887642 35799999996 4789999999864 4432 332 11
Q ss_pred ccccccCCceeeecCcccccccCCcCCCCccccCCCChHHHHHHHHHHHHHhCCcee-EEeEEEeCCCCCeEEEEeccCC
Q 024006 166 KQDLSTSAGVFRFPRVSCAAASADDADLDPCVAELPPRPLLERLAKELRRQLGLRLF-NLDIIREHGTRDQFYVIDINYF 244 (274)
Q Consensus 166 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lA~~~~~~lGl~l~-G~Dvi~~~~~g~~~~ViDVN~f 244 (274)
....+.. ...+....++++. .+++.++|.++.+++|+.-+ ++|++++.++| ++|++|+|.-
T Consensus 251 ----~r~~~~~--------~e~~Pa~~l~~~~-----~~~i~~~a~~i~~alg~~G~~~vEf~vd~~dg-~~~~iEiNpR 312 (1165)
T 2qf7_A 251 ----QRRNQKV--------VERAPAPYLSEAQ-----RQELAAYSLKIAGATNYIGAGTVEYLMDADTG-KFYFIEVNPR 312 (1165)
T ss_dssp ----EETTEEE--------EEEESCTTCCHHH-----HHHHHHHHHHHHHHTTCCEEEEEEEEEETTTT-EEEEEEEECS
T ss_pred ----eecccce--------EEecccccCCHHH-----HHHHHHHHHHHHHHcCCCcceeEEEEEECCCC-CEEEEEEEcC
Confidence 0000000 0000000122211 35688999999999999854 59999983245 6999999999
Q ss_pred CCCC
Q 024006 245 PGYG 248 (274)
Q Consensus 245 Pg~~ 248 (274)
+|..
T Consensus 313 ~~~~ 316 (1165)
T 2qf7_A 313 IQVE 316 (1165)
T ss_dssp CCTT
T ss_pred CCCC
Confidence 9854
No 64
>3hbl_A Pyruvate carboxylase; TIM barrel, ligase; HET: BTI ADP; 2.71A {Staphylococcus aureus subsp} PDB: 3bg5_A* 3ho8_A* 4hnu_A* 4hnt_A* 4hnv_A* 3hb9_A*
Probab=99.38 E-value=5.1e-12 Score=133.45 Aligned_cols=182 Identities=11% Similarity=0.164 Sum_probs=118.4
Q ss_pred HHHHHHhCCCcEEe-CcHHHHHHhcCHHHHHHHHHhccccCCCCCccCCCEE--EEecCCCChhHHHHhcCCCCcEEEee
Q 024006 27 LEEYRQTHPEVTVL-DPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQL--VIERDASSIPDVVLKAGLTLPLVAKP 103 (274)
Q Consensus 27 l~~y~~~~P~v~Vi-dp~~ai~~l~dR~~~~~~L~~~~~~~~~~~I~~P~~~--~~~~~~~~~~~~l~~~~l~~P~VvKp 103 (274)
+.+..+++ +++++ .++++++.+.||..+.+.+.+. ||++|++. .+. +.++..+. ...++||+|+||
T Consensus 94 ~a~~le~~-Gi~~iGp~~eai~~~~DK~~~r~ll~~a-------GIPvpp~~~~~v~-s~eea~~~--a~~iGyPvVVKP 162 (1150)
T 3hbl_A 94 FARRCAEE-GIKFIGPHLEHLDMFGDKVKARTTAIKA-------DLPVIPGTDGPIK-SYELAKEF--AEEAGFPLMIKA 162 (1150)
T ss_dssp HHHHHHHT-TCEESSSCHHHHHHHHSHHHHHHHHHHT-------TCCBCCBCSSCBC-SSSTTTTT--GGGTCSSEEEEC
T ss_pred HHHHHHHC-CCCeeCCCHHHHHHhCCHHHHHHHHHHc-------CcCCCCccccCCC-CHHHHHHH--HHHcCCCEEEEe
Confidence 33444442 67777 8899999999999999999986 89999987 443 22233221 235899999999
Q ss_pred CcCCCCccceeeEEEeChhhHhcc-------------CCCeEEEecccCCCeEEEEEEECCE---EEE-EEEe-cCCCCc
Q 024006 104 LVADGSAKSHELSLAYDQYSLKKL-------------EPPLVLQEFVNHGGVLFKVYIVGEA---IKV-VRRF-SLPDVT 165 (274)
Q Consensus 104 ~~a~Gs~~sh~m~iv~~~~~l~~l-------------~~p~vvQefI~h~g~~~KV~VIG~~---v~~-~~R~-S~p~~~ 165 (274)
..|+ +|.+|.++.++++|.+. +.++++||||+ +.+.+-|-|++|. ++. ..|. |..
T Consensus 163 ~~Gg---Gg~Gv~vv~s~eeL~~a~~~a~~~a~~~fg~~~vlVEeyI~-G~reieV~vl~d~~G~vv~l~er~~s~q--- 235 (1150)
T 3hbl_A 163 TSGG---GGKGMRIVREESELEDAFHRAKSEAEKSFGNSEVYIERYID-NPKHIEVQVIGDEHGNIVHLFERDCSVQ--- 235 (1150)
T ss_dssp CC----------CEECCSSSCTHHHHSSSSSCC------CBEEECCCS-SCEEEEEEEEECSSSCEEEEEEEEEEEE---
T ss_pred CCCC---CCCCEEEECCHHHHHHHHHHHHHHHHhhcCCCcEEEEEccC-CCcEEEEEEEEeCCCCEEEEEeecccee---
Confidence 9864 46789999999887531 35799999996 2389999999764 333 2332 210
Q ss_pred ccccccCCceeeecCcccccccCCcCCCCccccCCCChHHHHHHHHHHHHHhCCceeE-EeEEEeCCCCCeEEEEeccCC
Q 024006 166 KQDLSTSAGVFRFPRVSCAAASADDADLDPCVAELPPRPLLERLAKELRRQLGLRLFN-LDIIREHGTRDQFYVIDINYF 244 (274)
Q Consensus 166 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lA~~~~~~lGl~l~G-~Dvi~~~~~g~~~~ViDVN~f 244 (274)
.... ... . ......++++. .+++.++|.++.+++|+.-+| +|++++.+ ++|++|||.-
T Consensus 236 -----r~~~-k~~---e----~~Pa~~l~~~~-----~~~l~~~a~~~~~alG~~G~~~vEflvd~d---~~y~iEINpR 294 (1150)
T 3hbl_A 236 -----RRHQ-KVV---E----VAPSVGLSPTL-----RQRICDAAIQLMENIKYVNAGTVEFLVSGD---EFFFIEVNPR 294 (1150)
T ss_dssp -----SSSC-EEE---E----ESSCSSCCHHH-----HHHHHHHHHHHHHHTTCCEEEEEEEEEETT---EEEEEEEECS
T ss_pred -----ccCc-eeE---E----ecCCCCCCHHH-----HHHHHHHHHHHHHHcCCCceEEEEEEEECC---eEEEEEEeCC
Confidence 0000 000 0 00000122221 357889999999999998655 99999853 5899999999
Q ss_pred CCC
Q 024006 245 PGY 247 (274)
Q Consensus 245 Pg~ 247 (274)
||-
T Consensus 295 ~~g 297 (1150)
T 3hbl_A 295 VQV 297 (1150)
T ss_dssp CCT
T ss_pred CCC
Confidence 983
No 65
>3va7_A KLLA0E08119P; carboxylase, ligase; HET: BTI; 2.60A {Kluyveromyces lactis}
Probab=99.33 E-value=5.6e-12 Score=133.74 Aligned_cols=184 Identities=16% Similarity=0.249 Sum_probs=84.5
Q ss_pred HHHHHHhCCCcEEe-CcHHHHHHhcCHHHHHHHHHhccccCCCCCccCCCE-EEEecCCCChhHHHHhcCCCCcEEEeeC
Q 024006 27 LEEYRQTHPEVTVL-DPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQ-LVIERDASSIPDVVLKAGLTLPLVAKPL 104 (274)
Q Consensus 27 l~~y~~~~P~v~Vi-dp~~ai~~l~dR~~~~~~L~~~~~~~~~~~I~~P~~-~~~~~~~~~~~~~l~~~~l~~P~VvKp~ 104 (274)
+.+..++ -+++++ .+.++++.+.||..+.+.|++. ||++|++ ..+. +.++..+.. ..++||+|+||.
T Consensus 120 ~a~~le~-~Gi~~iGps~eai~~~~DK~~ak~ll~~a-------GIPvpp~~~~v~-s~eea~~~a--~~iGyPvVVKP~ 188 (1236)
T 3va7_A 120 FSDRCSQ-ENIVFVGPSGDAIRKLGLKHSAREIAERA-------KVPLVPGSGLIK-DAKEAKEVA--KKLEYPVMVKST 188 (1236)
T ss_dssp HHHHHHT-TTCEESSCCHHHHHHHHSTTHHHHHHHHT-------TCCCCC------------------------------
T ss_pred HHHHHHH-CCCCeeCCCHHHHHHhcCHHHHHHHHHHc-------CCCCCCeeEecC-CHHHHHHHH--HHcCCCEEEEeC
Confidence 3344444 367776 8889999999999999999986 8999884 4443 333333322 358999999998
Q ss_pred cCCCCccceeeEEEeChhhHhcc-------------CCCeEEEecccCCCeEEEEEEECCE---EEEE-EEe-cCCCCcc
Q 024006 105 VADGSAKSHELSLAYDQYSLKKL-------------EPPLVLQEFVNHGGVLFKVYIVGEA---IKVV-RRF-SLPDVTK 166 (274)
Q Consensus 105 ~a~Gs~~sh~m~iv~~~~~l~~l-------------~~p~vvQefI~h~g~~~KV~VIG~~---v~~~-~R~-S~p~~~~ 166 (274)
.++ ++.+|.++.++++|.+. +.++++||||+. ++.+.|.|++|. +... .|. |..
T Consensus 189 ~Gg---GGkGV~iv~s~eEL~~a~~~~~~~a~~~~~~~~vlVEeyI~G-~rEisV~vl~Dg~g~vv~l~~rd~s~q---- 260 (1236)
T 3va7_A 189 AGG---GGIGLQKVDSEDDIERVFETVQHQGKSYFGDAGVFMERFVNN-ARHVEIQMMGDGFGKAIAIGERDCSLQ---- 260 (1236)
T ss_dssp -----------------------------------------------C-CEEEEEEEEEESSSCEEEEEEEEEEEE----
T ss_pred CCC---CCCCEEEECCHHHHHHHHHHHHHHHHhccCCCcEEEeeccCC-CeEEEEEEEecCCceEEEEeeeeeeee----
Confidence 864 46789999999887642 347999999962 599999999763 3332 332 210
Q ss_pred cccccCCceeeecCcccccccCCcCCCCccccCCCChHHHHHHHHHHHHHhCCc-eeEEeEEEeCCCCCeEEEEeccCCC
Q 024006 167 QDLSTSAGVFRFPRVSCAAASADDADLDPCVAELPPRPLLERLAKELRRQLGLR-LFNLDIIREHGTRDQFYVIDINYFP 245 (274)
Q Consensus 167 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lA~~~~~~lGl~-l~G~Dvi~~~~~g~~~~ViDVN~fP 245 (274)
..+... ........++++. .+++.++|.++.+++|+. .+++|++++.+++ ++|++|||.-+
T Consensus 261 ----------r~~~k~--~e~~Pa~~l~~~~-----~~~l~~~a~~~~~alg~~G~~~VEfivd~d~g-~~y~iEINpRl 322 (1236)
T 3va7_A 261 ----------RRNQKV--IEETPAPNLPEAT-----RAKMRAASERLGSLLKYKCAGTVEFIYDEQRD-EFYFLEVNARL 322 (1236)
T ss_dssp ----------ETTEEE--EEEESCSSCCHHH-----HHHHHHHHHHHHHHTTCEEEEEEEEEEETTTT-EEEEEEEECSC
T ss_pred ----------ecCcce--EEEcCCCCCCHHH-----HHHHHHHHHHHHHHcCCcceEEEEEEEECCCC-cEEEEEEECCC
Confidence 000000 0000000122221 457889999999999997 5669999986445 79999999988
Q ss_pred CC
Q 024006 246 GY 247 (274)
Q Consensus 246 g~ 247 (274)
+-
T Consensus 323 ~g 324 (1236)
T 3va7_A 323 QV 324 (1236)
T ss_dssp CT
T ss_pred CC
Confidence 63
No 66
>2pbz_A Hypothetical protein; NYSGXRC, PSI-II, IMP biosynthesis, ATP binding protein, PURP structural genomics, protein structure initiative; HET: ATP; 2.50A {Thermococcus kodakarensis} SCOP: c.30.1.8 d.142.1.9
Probab=99.07 E-value=6.2e-10 Score=102.49 Aligned_cols=169 Identities=12% Similarity=0.095 Sum_probs=96.3
Q ss_pred CCcEEeCcHHHHHHhcCHHHHHHHHHhccccCCCCCccCCCEEEEecCCCChhHHHHhcCCCCcEEEeeCcCCCCcccee
Q 024006 35 PEVTVLDPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHE 114 (274)
Q Consensus 35 P~v~Vidp~~ai~~l~dR~~~~~~L~~~~~~~~~~~I~~P~~~~~~~~~~~~~~~l~~~~l~~P~VvKp~~a~Gs~~sh~ 114 (274)
-++++..+.++++...||...-+.|+++ ||++|++.. .+++ .++||+|+||..|+ +|+|
T Consensus 82 ~~~p~~p~~~~l~~~~dr~~~~~~l~~~-------Gip~P~~~~----~ee~-------~i~~PviVKp~~g~---ggkG 140 (320)
T 2pbz_A 82 AKARFFGNRRFLKWETTFELQDKALEGA-------GIPRVEVVE----PEDA-------KPDELYFVRIEGPR---GGSG 140 (320)
T ss_dssp CCSCCBSCSSGGGGGSCHHHHHHHHHHH-------TCCBCCBCC----SCCC-------CSSCCEEEECC----------
T ss_pred cCCCcCCCHHHHHHHHhHHHHHHHHHHC-------CcCCCCeeC----HhHc-------CcCCcEEEEECCCC---CCCC
Confidence 4678999999999999998877888886 899999872 1222 47899999999853 5899
Q ss_pred eEEEeChhhHhcc----CCCeEEEecccCCCeEEEEEE----ECCEEEE-EEEecCCCCcccccccCCceeee----cCc
Q 024006 115 LSLAYDQYSLKKL----EPPLVLQEFVNHGGVLFKVYI----VGEAIKV-VRRFSLPDVTKQDLSTSAGVFRF----PRV 181 (274)
Q Consensus 115 m~iv~~~~~l~~l----~~p~vvQefI~h~g~~~KV~V----IG~~v~~-~~R~S~p~~~~~~~~~~~g~~~~----~~~ 181 (274)
+.++.+ ++|... ..++++||||+ |..+.+-+ +-+++.. ..+.-+-+ .+|.+.. +..
T Consensus 141 ~~~v~~-eel~~~~~~~~~~~IiEEfI~--g~~~~~~~f~~~~~g~~e~~~~~~r~e~--------~~g~~~~p~~~~~~ 209 (320)
T 2pbz_A 141 HFIVEG-SELEERLSTLEEPYRVERFIP--GVYLYVHFFYSPILERLELLGVDERVLI--------ADGNARWPVKPLPY 209 (320)
T ss_dssp -----C-EECSCCCC----CCEEEECCC--SCEEEEEEEEETTTTEEEEEEEEEEEET--------TCSSSSSCCSCCCC
T ss_pred EEEECh-HHHHHHHHhcCCCEEEEeeec--eEecceeEEeccccCceeEEEecceEEE--------ECCeeecccCCCce
Confidence 999999 998754 25899999997 55543111 2222221 11111111 1111111 000
Q ss_pred ccccccCCcCCCCccccCCCChHHHHHHHHHHHHHh------CCc-eeEEeEEEeCCCCCeEEEEeccCC-CC
Q 024006 182 SCAAASADDADLDPCVAELPPRPLLERLAKELRRQL------GLR-LFNLDIIREHGTRDQFYVIDINYF-PG 246 (274)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lA~~~~~~l------Gl~-l~G~Dvi~~~~~g~~~~ViDVN~f-Pg 246 (274)
+..|. .+..++++. .+++.++|.++.++| |+. .+++| + +. +| +++|+|||.= +|
T Consensus 210 ~~~G~--~P~~~~~~~-----~~~a~~~a~~i~~~L~~l~~~g~~G~~~vE-~-~~-dg-~~~v~EIapR~~G 271 (320)
T 2pbz_A 210 TIVGN--RAIALRESL-----LPQLYDYGLAFVRTMRELEPPGVIGPFALH-F-AY-DG-SFKAIGIASRIDG 271 (320)
T ss_dssp CEEEE--EECEECGGG-----HHHHHHHHHHHHHHHHHHSTTCCCSEEEEE-E-EC-SS-SCEEEEEESSBCS
T ss_pred eeecC--CCCccCHHH-----HHHHHHHHHHHHHHHHhhccCCceeeEEEE-E-cC-CC-cEEEEEecCCCCC
Confidence 00000 011112111 467889999999998 666 77899 4 32 34 5899999995 55
No 67
>2cqy_A Propionyl-COA carboxylase alpha chain, mitochondrial; PCCA, B domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.94 E-value=8.9e-12 Score=95.28 Aligned_cols=91 Identities=12% Similarity=0.195 Sum_probs=64.9
Q ss_pred HHHhcCHHHHHHHHHhccccCCCCCccCCCEE--EEecCCCChhHHHHhcCCCCcEEEeeCcCCCCccceeeEEEeChhh
Q 024006 46 IQHLHNRQSMLQCVADMNLSNSYGKVDVPRQL--VIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYS 123 (274)
Q Consensus 46 i~~l~dR~~~~~~L~~~~~~~~~~~I~~P~~~--~~~~~~~~~~~~l~~~~l~~P~VvKp~~a~Gs~~sh~m~iv~~~~~ 123 (274)
...++||..+.+.|.+. ||++|++. .+. +.++..+.. ..++||+|+||..++ ++.++.++.++++
T Consensus 3 ~~~~~dK~~~~~~l~~~-------gip~p~~~~~~~~-~~~~~~~~~--~~~~~P~vvKp~~~~---~~~gv~~v~~~~e 69 (108)
T 2cqy_A 3 SGSSGDKIESKLLAKKA-------EVNTIPGFDGVVK-DAEEAVRIA--REIGYPVMIKASAGG---GGKGMRIAWDDEE 69 (108)
T ss_dssp CCCCCCCCCSTTCCCSS-------CCCCCSCCCSCBS-SHHHHHHHH--HHHCSSEEEEETTSC---CTTTCEEESSHHH
T ss_pred hhhhcCHHHHHHHHHHc-------CCCCCCCcccccC-CHHHHHHHH--HhcCCCEEEEECCCC---CCccEEEeCCHHH
Confidence 45677888877777764 89999987 553 222232222 247899999999864 3568999999988
Q ss_pred Hhcc-------------CCCeEEEecccCCCeEEEEEEEC
Q 024006 124 LKKL-------------EPPLVLQEFVNHGGVLFKVYIVG 150 (274)
Q Consensus 124 l~~l-------------~~p~vvQefI~h~g~~~KV~VIG 150 (274)
+... +.++++||||+. .+++.|.|+|
T Consensus 70 l~~~~~~~~~~~~~~~~~~~~lvee~i~g-~~E~~v~v~g 108 (108)
T 2cqy_A 70 TRDGFRLSSQEAASSFGDDRLLIEKFIDN-PRHISGPSSG 108 (108)
T ss_dssp HHHHHHHHHHHHHHHTSSCCEEEEECCSS-SSCCCSCCCC
T ss_pred HHHHHHHHHHHHHhhcCCCcEEEeeccCC-CcEEEEEecC
Confidence 7531 468999999963 3588887776
No 68
>2r7k_A 5-formaminoimidazole-4-carboxamide-1-(beta)-D- ribofuranosyl 5'-monophosphate synthetase...; ATP-grAsp superfamily, ATP-binding; HET: ACP AMZ; 2.10A {Methanocaldococcus jannaschii} SCOP: c.30.1.8 d.142.1.9 PDB: 2r7l_A* 2r7m_A* 2r7n_A*
Probab=98.85 E-value=1.5e-08 Score=94.57 Aligned_cols=176 Identities=15% Similarity=0.174 Sum_probs=104.4
Q ss_pred CCCcEEeCcHHHHHHhcCHHHHHHHHHhccccCCCCCccCCCEEEEecCCCChhHHHHhcCCCCcEEEeeCcCCCCccce
Q 024006 34 HPEVTVLDPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSH 113 (274)
Q Consensus 34 ~P~v~Vidp~~ai~~l~dR~~~~~~L~~~~~~~~~~~I~~P~~~~~~~~~~~~~~~l~~~~l~~P~VvKp~~a~Gs~~sh 113 (274)
.-++++.-+.++.+...||...-+.|+++ |||+|++ +. +. ..+.||+|+||..++ +++
T Consensus 107 ~~g~~v~g~~~a~~~e~~k~~~k~~l~~~-------GIptp~~--~~-~~---------~e~~~PvVVK~~~~a---~Gk 164 (361)
T 2r7k_A 107 SFLVPMFGNRRILRWESERSLEGKLLREA-------GLRVPKK--YE-SP---------EDIDGTVIVKFPGAR---GGR 164 (361)
T ss_dssp TCCSCBBSCGGGGGTTTCHHHHHHHHHHT-------TCCCCCE--ES-SG---------GGCCSCEEEECSCCC---C--
T ss_pred HcCCCcCCCHHHHHHhhhHHHHHHHHHHc-------CcCCCCE--eC-CH---------HHcCCCEEEeeCCCC---CCC
Confidence 34677777888888888998777888886 8999986 32 21 123689999998753 589
Q ss_pred eeEEEeChhhHhcc------------C--CCeEEEecccCCCeEEEE---EE-ECCE--EEEEEEe--cCCC----Cccc
Q 024006 114 ELSLAYDQYSLKKL------------E--PPLVLQEFVNHGGVLFKV---YI-VGEA--IKVVRRF--SLPD----VTKQ 167 (274)
Q Consensus 114 ~m~iv~~~~~l~~l------------~--~p~vvQefI~h~g~~~KV---~V-IG~~--v~~~~R~--S~p~----~~~~ 167 (274)
|+.++.+.+++.+. . .++++||||+ |..+.+ |- ++++ +++..+| +-.+ +..+
T Consensus 165 Gv~v~~s~ee~~~a~~~~~~~~~~~~~~~~~viIEEfl~--G~e~s~~~f~~~~~~~~e~~~id~r~~~~~dgi~~~~~~ 242 (361)
T 2r7k_A 165 GYFIASSTEEFYKKAEDLKKRGILTDEDIANAHIEEYVV--GTNFCIHYFYSPLKDEVELLGMDKRYESNIDGLVRIPAK 242 (361)
T ss_dssp -EEEESSHHHHHHHHHHHHHTTSCCHHHHHHCEEEECCC--SEEEEEEEEEETTTTEEEEEEEEEEEEEEHHHHTTSCHH
T ss_pred CEEEECCHHHHHHHHHHHHhccccccCCCCeEEEEeccc--eEEeeEEEEecccCCeeEEEEecceEEeecccceecchh
Confidence 99999999887542 1 4699999996 666542 11 2443 2222222 1000 0000
Q ss_pred c-cccCCceeeecCcccccccCCcCCCCccccCCCChHHHHHHHHHHHHHh------CCc-eeEEeEEEeCCCCCeEEEE
Q 024006 168 D-LSTSAGVFRFPRVSCAAASADDADLDPCVAELPPRPLLERLAKELRRQL------GLR-LFNLDIIREHGTRDQFYVI 239 (274)
Q Consensus 168 ~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lA~~~~~~l------Gl~-l~G~Dvi~~~~~g~~~~Vi 239 (274)
+ +....+ +...-.|. .+..++++. .+++.++|.++.++| |+. .++++++++. +| +++|+
T Consensus 243 ~~~~~~~~----p~~v~~G~--~Pa~l~~~~-----~~~a~~~a~~v~~al~~~~~~~~~G~~~vE~fvt~-dg-~i~V~ 309 (361)
T 2r7k_A 243 DQLEMNIN----PSYVITGN--IPVVIRESL-----LPQVFEMGDKLVAKAKELVPPGMIGPFCLQSLCNE-NL-ELVVF 309 (361)
T ss_dssp HHHTCCCC----CCEEEEEE--EECCCCGGG-----HHHHHHHHHHHHHHHHHHSTTCCCEEEEEEEEECT-TS-CEEEE
T ss_pred hhhcccCC----CceEEecC--cCCcCCHHH-----HHHHHHHHHHHHHHHHhhccCCccceEEEEEEEcC-CC-CEEEE
Confidence 0 000000 00000000 012222222 467899999999999 555 7789999864 34 58999
Q ss_pred eccCCCC
Q 024006 240 DINYFPG 246 (274)
Q Consensus 240 DVN~fPg 246 (274)
|||.=||
T Consensus 310 EIapR~g 316 (361)
T 2r7k_A 310 EMSARVD 316 (361)
T ss_dssp EEESSBC
T ss_pred EEcCCCC
Confidence 9999666
No 69
>3tig_A TTL protein; ATP-grAsp, ligase, tubulin; 2.50A {Silurana} PDB: 3tii_A* 3tin_A*
Probab=98.58 E-value=5e-07 Score=84.82 Aligned_cols=110 Identities=13% Similarity=0.144 Sum_probs=70.0
Q ss_pred cEEeCcHHHHHHhcCHHHHHHHHHhccccCCCCCccCCCEEEE-ecCC--------------------CChhHHH-----
Q 024006 37 VTVLDPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVI-ERDA--------------------SSIPDVV----- 90 (274)
Q Consensus 37 v~Vidp~~ai~~l~dR~~~~~~L~~~~~~~~~~~I~~P~~~~~-~~~~--------------------~~~~~~l----- 90 (274)
.-.||=......+..|..+.+.|.+... .....=..|++..+ ..+. ++..+.+
T Consensus 62 ~Q~vNhfPg~~~l~rKd~L~~nl~~~~~-~~~~~~f~P~ty~L~P~~~~~p~~~~~~~~~~~~~~~~~~E~~~F~~~~~~ 140 (380)
T 3tig_A 62 VQLVNYYRGADKLCRKASLVKLIKTSPE-LTETCTWFPESYVIYPTNEKTPAMRARNGLPDLANAPRTDEREEFRSSFNK 140 (380)
T ss_dssp CCEESCCTTTHHHHSHHHHHHHHHHCHH-HHTTCTTSCCEEECCC------------------------CCHHHHHHHHH
T ss_pred ceEEeecCCcccccccHHHHHHHHHhhh-cccccCcCCcceeeCccccccccccccccccccccccchhHHHHHHHHHHH
Confidence 3567777777888888888888765210 01112347777776 3210 1222222
Q ss_pred -HhcCCCCcEEEeeCcCCCCccceeeEEEeChhhHhcc----CCCeEEEecccC------CC--eEEEEEEEC
Q 024006 91 -LKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKKL----EPPLVLQEFVNH------GG--VLFKVYIVG 150 (274)
Q Consensus 91 -~~~~l~~P~VvKp~~a~Gs~~sh~m~iv~~~~~l~~l----~~p~vvQefI~h------~g--~~~KV~VIG 150 (274)
+..+-+.++|+||..+ + .+.|+.++.+.+++.++ ..++|+|+||+. +| .|+|+||+-
T Consensus 141 ~~~~~~~~~wI~KP~~~--s-rG~GI~l~~~~~~i~~~~~~~~~~~VvQkYI~~PlLi~~~grKFDlR~Yvlv 210 (380)
T 3tig_A 141 KKENEEGNVWIAKSSSG--A-KGEGILISSDATELLDFIDNQGQVHVIQKYLESPLLLEPGHRKFDIRSWVLV 210 (380)
T ss_dssp HHHTTCCCCEEEEESCC-------CCBCCSCSHHHHHHHHHHTSCEEEEECCSSBCCBTTTTBCEEEEEEEEE
T ss_pred hhhcCCCCeEEEeCCcc--C-CCCCEEEeCCHHHHHHHHhccCCcEEEEecccCceeecCCCceeEEEEEEEE
Confidence 1246678999999874 3 78899999999887643 578999999976 45 399999983
No 70
>1wr2_A Hypothetical protein PH1789; structural genomics, NPPSFA, national on protein structural and functional analyses; 2.00A {Pyrococcus horikoshii}
Probab=98.43 E-value=1.2e-07 Score=82.95 Aligned_cols=93 Identities=12% Similarity=0.129 Sum_probs=68.6
Q ss_pred hcCHHHHHHHHHhccccCCCCCccCCCEEEEecCCCChhHHHHhcCCCCcEEEeeCcCC--CCccceeeEE-EeChhhHh
Q 024006 49 LHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVAD--GSAKSHELSL-AYDQYSLK 125 (274)
Q Consensus 49 l~dR~~~~~~L~~~~~~~~~~~I~~P~~~~~~~~~~~~~~~l~~~~l~~P~VvKp~~a~--Gs~~sh~m~i-v~~~~~l~ 125 (274)
.+||+.+.++|++. ||++|++.++.+. ++..+.. ..++||+|+||..+. |-..+.++.+ +.+++++.
T Consensus 19 ~l~k~~~k~ll~~~-------GIp~p~~~~~~~~-~ea~~~a--~~lg~PvvvKp~~~~~~~r~~~gGv~~~v~~~~el~ 88 (238)
T 1wr2_A 19 AMVEYEAKQVLKAY-------GLPVPEEKLAKTL-DEALEYA--KEIGYPVVLKLMSPQILHKSDAKVVMLNIKNEEELK 88 (238)
T ss_dssp EECHHHHHHHHHTT-------TCCCCCCEEESSH-HHHHHHH--HHHCSSEEEEEECTTCCCHHHHTCEEEEECSHHHHH
T ss_pred CCCHHHHHHHHHHc-------CcCCCCeEEeCCH-HHHHHHH--HHhCCCEEEEEccCCCCcCCccCCEEEeCCCHHHHH
Confidence 57999999999986 8999999988532 2232222 347899999998751 1124667777 79998875
Q ss_pred cc----------------CCCeEEEecccCCCeEEEEEEECCE
Q 024006 126 KL----------------EPPLVLQEFVNHGGVLFKVYIVGEA 152 (274)
Q Consensus 126 ~l----------------~~p~vvQefI~h~g~~~KV~VIG~~ 152 (274)
+. ..++++||||+ +|+.+-|.+++|.
T Consensus 89 ~a~~~~~~~~~~~~~~~~~~~vlVEe~i~-~g~E~~v~v~~d~ 130 (238)
T 1wr2_A 89 KKWEEIHENAKKYRPDAEILGVLVAPMLK-PGREVIIGVTEDP 130 (238)
T ss_dssp HHHHHHHHHHHHHCTTCCCCEEEEEECCC-CCEEEEEEEEEET
T ss_pred HHHHHHHHhhhhhCCCCccceEEEEECCC-CCeEEEEEEEeCC
Confidence 42 15799999997 4899999998876
No 71
>3ufx_B Succinyl-COA synthetase beta subunit; ATP-grAsp fold, ligase; HET: GDP; 2.35A {Thermus aquaticus}
Probab=97.72 E-value=7.4e-05 Score=70.45 Aligned_cols=91 Identities=15% Similarity=0.103 Sum_probs=65.5
Q ss_pred HHHHHHHHHhccccCCCCCccCCCEEEEecCCCChhHHHHhcCCCCcEEEeeCcC-CCCccceeeEEEeChhhHhcc---
Q 024006 52 RQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVA-DGSAKSHELSLAYDQYSLKKL--- 127 (274)
Q Consensus 52 R~~~~~~L~~~~~~~~~~~I~~P~~~~~~~~~~~~~~~l~~~~l~~P~VvKp~~a-~Gs~~sh~m~iv~~~~~l~~l--- 127 (274)
-+.+-++|++. |||+|++.++.+ .++..+... .++||+|+||... +|...+.+|.++.+++++++.
T Consensus 5 E~~aK~lL~~~-------GIpvp~~~~~~s-~eea~~aa~--~lG~PvVvKa~~~~ggkg~~GGV~l~~s~ee~~~a~~~ 74 (397)
T 3ufx_B 5 EYQAKEILARY-------GVPVPPGKVAYT-PEEAKRIAE--EFGKRVVIKAQVHVGGRGKAGGVKLADTPQEAYEKAQA 74 (397)
T ss_dssp HHHHHHHHHHT-------TCCCCCEEEESS-HHHHHHHHH--HHTSCEEEEECCSSSCTTTTTCEEEESSHHHHHHHHHH
T ss_pred HHHHHHHHHHC-------CCCCCCeEEECC-HHHHHHHHH--HcCCCEEEEEccccCCCCccceEEEeCCHHHHHHHHHH
Confidence 35566777775 999999999853 223333222 3679999999872 233356799999999887542
Q ss_pred ----------CCCeEEEecccCCCeEEEEEEECCEE
Q 024006 128 ----------EPPLVLQEFVNHGGVLFKVYIVGEAI 153 (274)
Q Consensus 128 ----------~~p~vvQefI~h~g~~~KV~VIG~~v 153 (274)
..++++|||+++ |+++-|.++.|..
T Consensus 75 ~~~~~~~g~~~~~vlVEe~v~~-g~El~vgv~~D~~ 109 (397)
T 3ufx_B 75 ILGMNIKGLTVKKVLVAEAVDI-AKEYYAGLILDRA 109 (397)
T ss_dssp HTTCEETTEECCCEEEEECCCE-EEEEEEEEEEETT
T ss_pred hhhhhccCCccceEEEEEeecC-CeeEEEEEEecCC
Confidence 247999999963 8999999887764
No 72
>2nu8_B SCS-beta, succinyl-COA synthetase beta chain; citric acid cycle, heterotetramer, ligase, ATP-grAsp fold, R fold; HET: COA; 2.15A {Escherichia coli} SCOP: c.23.4.1 d.142.1.4 PDB: 1scu_B* 2nu6_B* 1jkj_B* 2nu7_B* 2nu9_B* 2nua_B* 2scu_B* 1jll_B* 1cqj_B* 1cqi_B*
Probab=97.68 E-value=7.3e-05 Score=70.31 Aligned_cols=93 Identities=10% Similarity=0.081 Sum_probs=67.0
Q ss_pred cCHHHHHHHHHhccccCCCCCccCCCEEEEecCCCChhHHHHhcCCCCc-EEEeeCcCC-CCccceeeEEEeChhhHhcc
Q 024006 50 HNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLP-LVAKPLVAD-GSAKSHELSLAYDQYSLKKL 127 (274)
Q Consensus 50 ~dR~~~~~~L~~~~~~~~~~~I~~P~~~~~~~~~~~~~~~l~~~~l~~P-~VvKp~~a~-Gs~~sh~m~iv~~~~~l~~l 127 (274)
++.+.+-++|++. |||+|++.++.+ .++..+.. ..++|| +|+||.... |-..+.+|.++.+++++++.
T Consensus 3 l~E~~aK~lL~~~-------GIpvp~~~~~~s-~eea~~aa--~~lG~P~vVvK~~~~~ggrg~~gGV~l~~s~eel~~a 72 (388)
T 2nu8_B 3 LHEYQAKQLFARY-------GLPAPVGYACTT-PREAEEAA--SKIGAGPWVVKCQVHAGGRGKAGGVKVVNSKEDIRAF 72 (388)
T ss_dssp CCHHHHHHHHHHT-------TCCCCCEEEESS-HHHHHHHH--HHHCSSCEEEEECCSSSCTTTTTCEEEECSHHHHHHH
T ss_pred CCHHHHHHHHHHC-------CcCCCCeeEECC-HHHHHHHH--HHhCCCeEEEEEecCCCCCCccCCEEEECCHHHHHHH
Confidence 3567777888885 899999998853 22333322 247899 999998742 22357799999999877531
Q ss_pred -----C---------------CCeEEEecccCCCeEEEEEEECCEE
Q 024006 128 -----E---------------PPLVLQEFVNHGGVLFKVYIVGEAI 153 (274)
Q Consensus 128 -----~---------------~p~vvQefI~h~g~~~KV~VIG~~v 153 (274)
. .++++|+|+++ |+++-|.++.|+.
T Consensus 73 ~~~~~~~~~~t~q~g~~g~~~~~vlVEe~v~~-~~E~~v~v~~D~~ 117 (388)
T 2nu8_B 73 AENWLGKRLVTYQTDANGQPVNQILVEAATDI-AKELYLGAVVDRS 117 (388)
T ss_dssp HHHHTTSEECCTTSCTTCEECCCEEEEECCCE-EEEEEEEEEEETT
T ss_pred HHHHhhhhhhccccCCCCcccceEEEEEcccc-CCcEEEEEEEecc
Confidence 1 36999999974 7899998887764
No 73
>2fp4_B Succinyl-COA ligase [GDP-forming] beta-chain, mitochondrial; active site phosphohistidine residue; HET: NEP GTP; 2.08A {Sus scrofa} SCOP: c.23.4.1 d.142.1.4 PDB: 2fpg_B* 2fpi_B* 2fpp_B* 1euc_B* 1eud_B*
Probab=97.44 E-value=0.00027 Score=66.58 Aligned_cols=92 Identities=17% Similarity=0.165 Sum_probs=63.8
Q ss_pred CHHHHHHHHHhccccCCCCCccCCCEEEEecCCCChhHHHHhcCCCC-cEEEeeCcCCCC-ccc-------eeeEEEeCh
Q 024006 51 NRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTL-PLVAKPLVADGS-AKS-------HELSLAYDQ 121 (274)
Q Consensus 51 dR~~~~~~L~~~~~~~~~~~I~~P~~~~~~~~~~~~~~~l~~~~l~~-P~VvKp~~a~Gs-~~s-------h~m~iv~~~ 121 (274)
+.+.+-++|++. |||+|++.++.+ .++..+... .++| |+|+||...+|. -.+ .+|.++.++
T Consensus 4 ~E~~aK~lL~~~-------GIpvp~~~~~~s-~~ea~~~a~--~lg~~PvVvK~~i~~GGrGKg~~ks~~~GGV~l~~s~ 73 (395)
T 2fp4_B 4 QEYQSKKLMSDN-------GVKVQRFFVADT-ANEALEAAK--RLNAKEIVLKAQILAGGRGKGVFSSGLKGGVHLTKDP 73 (395)
T ss_dssp CHHHHHHHHHHT-------TCCCCCEEEESS-HHHHHHHHH--HHTCSSEEEEECCSSSCGGGCEETTSCBCSEEEESCH
T ss_pred CHHHHHHHHHHC-------CcCCCCeEEECC-HHHHHHHHH--HcCCCcEEEEEeeccCCCccCccccCCcCCEEEECCH
Confidence 456667778875 899999998853 223333232 4789 899999743333 112 569999999
Q ss_pred hhHhcc-----C---------------CCeEEEecccCCCeEEEEEEECCEE
Q 024006 122 YSLKKL-----E---------------PPLVLQEFVNHGGVLFKVYIVGEAI 153 (274)
Q Consensus 122 ~~l~~l-----~---------------~p~vvQefI~h~g~~~KV~VIG~~v 153 (274)
+++++. . ..+++|||++ .|+.+-|.++.|+.
T Consensus 74 ~e~~~a~~~~l~~~~~t~q~g~~g~~~~~vlVEe~v~-~~~E~~v~i~~D~~ 124 (395)
T 2fp4_B 74 EVVGQLAKQMIGYNLATKQTPKEGVKVNKVMVAEALD-ISRETYLAILMDRS 124 (395)
T ss_dssp HHHHHHHHTTTTSEEECTTSCTTCEECCCEEEEECCC-CSEEEEEEEEEETT
T ss_pred HHHHHHHHHHhhcchhhhccCCCCCccceEEEEEccC-CceeEEEEEEEccc
Confidence 877531 1 2489999997 48999998887764
No 74
>2io8_A Bifunctional glutathionylspermidine synthetase/amidase; ligase, hydrolase; HET: ADP; 2.10A {Escherichia coli} SCOP: c.30.1.7 d.3.1.15 d.142.1.8 PDB: 2io7_A* 2io9_A* 2ioa_A* 2iob_A 3o98_A*
Probab=96.03 E-value=0.02 Score=56.79 Aligned_cols=108 Identities=18% Similarity=0.188 Sum_probs=70.7
Q ss_pred CCCcEEeCcHHHHHHhcCHHHHHHHHHhccccCCCCCccCCCEEEEecCCCChhHHHHhcCCCCcEEEeeCcCCCCccce
Q 024006 34 HPEVTVLDPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSH 113 (274)
Q Consensus 34 ~P~v~Vidp~~ai~~l~dR~~~~~~L~~~~~~~~~~~I~~P~~~~~~~~~~~~~~~l~~~~l~~P~VvKp~~a~Gs~~sh 113 (274)
..++.+++|+.++- +.||.. +.+|.++...+ + -.+++. ++ .+.. +... ..|.||..|. ++.
T Consensus 481 ~~~v~iieP~~~~l-lsNKai-lalLw~l~p~h---p-~LLpT~-f~--~~~~---l~~~----~yV~KPi~gR---eG~ 541 (619)
T 2io8_A 481 RPEVLVFEPLWTVI-PGNKAI-LPILWSLFPHH---R-YLLDTD-FT--VNDE---LVKT----GYAVKPIAGR---CGS 541 (619)
T ss_dssp CTTCEEESCGGGGT-TTSTTH-HHHHHHHSTTC---T-TCCCEE-SS--CCHH---HHHH----CEEEEETTCC---TTT
T ss_pred hCCCEEECHHHHHH-hhhHHH-HHHHHHhCCCC---C-CCCCee-ec--CCcc---cccC----CEEEccCCCC---CCC
Confidence 46799999999977 889876 44444431111 1 133444 21 1111 2222 5999999953 677
Q ss_pred eeEEEeC-hhhHhcc-----CCCeEEEecccCCCeE-----EEEEEECCEEEEE-EEec
Q 024006 114 ELSLAYD-QYSLKKL-----EPPLVLQEFVNHGGVL-----FKVYIVGEAIKVV-RRFS 160 (274)
Q Consensus 114 ~m~iv~~-~~~l~~l-----~~p~vvQefI~h~g~~-----~KV~VIG~~v~~~-~R~S 160 (274)
+|.++.. .+.+.+. +.++|+|||++-+..+ +-+|+||++..+. .|.+
T Consensus 542 nV~i~~~~~~~~~~~~~~y~~~~~IyQe~~~lp~~d~~~~~iG~f~vgg~~aG~~~R~~ 600 (619)
T 2io8_A 542 NIDLVSHHEEVLDKTSGKFAEQKNIYQQLWCLPKVDGKYIQVCTFTVGGNYGGTCLRGD 600 (619)
T ss_dssp TCEEECTTSCEEEECCCTTTTSCEEEEECCCCCEETTEEEEEEEEEETTEEEEEEEEEE
T ss_pred CEEEEeCCChhHhhccccccCCCeEEEEecCCCCcCCcceEEEEEEECCEEEEEEEecC
Confidence 8999876 2222221 4689999999987666 8899999999875 7775
No 75
>3n6x_A Putative glutathionylspermidine synthase; domain of unknown function (DUF404), structural genomics; 2.35A {Methylobacillus flagellatus}
Probab=92.09 E-value=0.15 Score=48.88 Aligned_cols=112 Identities=18% Similarity=0.273 Sum_probs=63.7
Q ss_pred HHHHHHHHhCCCcEEeCcHHHHHHhcCHH------HHHHHHHhccccCCCCCc-cCCCEEEEecCCCChhHHHHhcCCCC
Q 024006 25 QILEEYRQTHPEVTVLDPPYAIQHLHNRQ------SMLQCVADMNLSNSYGKV-DVPRQLVIERDASSIPDVVLKAGLTL 97 (274)
Q Consensus 25 ~~l~~y~~~~P~v~Vidp~~ai~~l~dR~------~~~~~L~~~~~~~~~~~I-~~P~~~~~~~~~~~~~~~l~~~~l~~ 97 (274)
..++.|.+. .|.++||+.+- .+.||. .+.+.+-.- . .-+ .+|.+. +. +.++....+....
T Consensus 297 gLl~A~r~G--~V~i~Na~gsg-v~~dKal~a~Lp~l~~~~lgE----e-~il~~VpT~~-c~-~~~~~~~vl~~l~--- 363 (474)
T 3n6x_A 297 GLLSVYRNG--GVTLANAVGTG-VADDKDTYIYVPEMIRFYLGE----E-PILSNVPTYQ-LS-KADDLKYVLDNLA--- 363 (474)
T ss_dssp THHHHHHTT--SCEEESCTTTH-HHHSTTTGGGHHHHHHHHHCS----C-CSSEECCCEE-TT-SHHHHHHHHHSGG---
T ss_pred HHHHHHHcC--CEEEeCCCchh-hhcCcHHHHHhHHHHHHhCCH----h-hhccCCCcee-cC-CHHHHHHHHhchh---
Confidence 477788776 79999999885 888884 233333221 1 122 355443 32 2222333333323
Q ss_pred cEEEeeCcCCCCccceeeEE--EeChhhHhcc-----CCC--eEEEecccCC-------C------eEEEEEEE-CCE
Q 024006 98 PLVAKPLVADGSAKSHELSL--AYDQYSLKKL-----EPP--LVLQEFVNHG-------G------VLFKVYIV-GEA 152 (274)
Q Consensus 98 P~VvKp~~a~Gs~~sh~m~i--v~~~~~l~~l-----~~p--~vvQefI~h~-------g------~~~KV~VI-G~~ 152 (274)
-+|+||..+.| +.+|.+ -.+.+++.++ ..| +|+||+|+-+ | .++|+|++ |+.
T Consensus 364 ~lViKp~~g~g---g~gv~iG~~~s~~e~~~~~~~i~~~p~~yIaQe~v~ls~~P~~~~~~~~~r~~dlR~F~~~g~~ 438 (474)
T 3n6x_A 364 ELVVKEVQGSG---GYGMLVGPAASKQELEDFRQRILANPANYIAQPTLALSTCPTLVETGIAPRHVDLRPFVLSGKT 438 (474)
T ss_dssp GEEEEECCCE--------EEGGGCCHHHHHHHHHHHHHSGGGEEEEECCCCCEEEEEETTEEEEEEEEEECEEEESSS
T ss_pred heEEEecCCCC---CCceEECCcCCHHHHHHHHHHHHhCCCCEEEeeccCCcccceeeCCceeeeeEEEEEEEEcCCc
Confidence 79999999653 456655 2334454442 567 9999999742 2 57888888 544
No 76
>3mwd_A ATP-citrate synthase; ATP-grAsp, phosphohistidine, organic acid, lyase, transferas; HET: CIT; 2.10A {Homo sapiens} PDB: 3mwe_A*
Probab=90.41 E-value=1.2 Score=41.95 Aligned_cols=98 Identities=15% Similarity=0.112 Sum_probs=60.7
Q ss_pred HHHHHHHhccccCCCCCccCCCEEEEecCCCChhHHHH-hcCCC-CcEEEeeCcC-CCCccceeeEEEeChhhHhcc---
Q 024006 54 SMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVL-KAGLT-LPLVAKPLVA-DGSAKSHELSLAYDQYSLKKL--- 127 (274)
Q Consensus 54 ~~~~~L~~~~~~~~~~~I~~P~~~~~~~~~~~~~~~l~-~~~l~-~P~VvKp~~a-~Gs~~sh~m~iv~~~~~l~~l--- 127 (274)
..-.+|.+++.... ..+..|++.++++. .+..++.. ...++ ||+|+|+..- +|-..+.++.+..++++.++.
T Consensus 10 ~~K~ll~~~~~~~~-~~~~~~~~~~~~~~-~~~~eA~~~a~~lg~~pvVvKaqv~~ggRgk~GGV~l~~s~eev~~aa~~ 87 (425)
T 3mwd_A 10 TGKELLYKFICTTS-AIQNRFKYARVTPD-TDWARLLQDHPWLLSQNLVVKPDQLIKRRGKLGLVGVNLTLDGVKSWLKP 87 (425)
T ss_dssp HHHHHHHHHCCCSS-CBCSTTCCEEECTT-CCHHHHHHHCGGGGTSCEEEEECSSCSCTTTTTCCEEEECHHHHHHHHTT
T ss_pred HHHHHHHHhccccC-CccCCcceEEeCCC-CCHHHHHHHHHHhCCCCEEEEeccccCCCCcCCeEEEECCHHHHHHHHHH
Confidence 34455666533111 12455667777533 23333332 23566 9999999763 344567789999998776542
Q ss_pred --------C------CCeEEEecccCC-CeEEEEEEECCEE
Q 024006 128 --------E------PPLVLQEFVNHG-GVLFKVYIVGEAI 153 (274)
Q Consensus 128 --------~------~p~vvQefI~h~-g~~~KV~VIG~~v 153 (274)
. ..+++|++++++ ++++-+-+.=|+.
T Consensus 88 ml~~~~~~~~~~~~v~~vlVe~~~~~~~~~E~ylgi~~Dr~ 128 (425)
T 3mwd_A 88 RLGQEATVGKATGFLKNFLIEPFVPHSQAEEFYVCIYATRE 128 (425)
T ss_dssp TTTCEEEETTEEEECCCEEEEECCCCCGGGEEEEEEEEETT
T ss_pred HHhhhhhccCCCceEEEEEEEecccCCCCceEEEEEEecCC
Confidence 0 138999999986 7888887776654
No 77
>2vob_A Trypanothione synthetase; ligase; 2.3A {Leishmania major} PDB: 2vps_A 2vpm_A
Probab=81.23 E-value=2.3 Score=42.25 Aligned_cols=106 Identities=11% Similarity=0.165 Sum_probs=52.5
Q ss_pred CcEEeCcHHHHHHhcCHHHHHHHHHhccccCCCCCccCCCEEEEecCCCChhHHHHhcCCCCcEEEeeCcCCCCccceee
Q 024006 36 EVTVLDPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHEL 115 (274)
Q Consensus 36 ~v~Vidp~~ai~~l~dR~~~~~~L~~~~~~~~~~~I~~P~~~~~~~~~~~~~~~l~~~~l~~P~VvKp~~a~Gs~~sh~m 115 (274)
.+.+|||+.++ .+.||.. +.+|.++-.. + .- .+++. + +.+.. +... ..|.||..|- ++.+|
T Consensus 498 ~v~~ieP~wk~-LlsNKai-LalLW~l~p~--h-p~-LLpt~-f--~~~~~---~~~~----~yV~KPi~gR---eG~nV 558 (652)
T 2vob_A 498 EILYFEPMWKV-IPSNKAI-LPMIYHNHPE--H-PA-ILKAE-Y--ELTDE---LRKH----GYAKKPIVGR---VGSNV 558 (652)
T ss_dssp TSEEESCGGGG-TTTSTTH-HHHHHHHCTT--C-TT-BCCEE-S--SCCHH---HHHH----CEEEEECC----------
T ss_pred ceEEeChhHHH-hhcCHHH-HHHHHhcccC--C-CC-CCchh-h--cCCCc---cccC----CeEeccCCCC---CCCCE
Confidence 79999999654 4557654 5566553211 1 11 23232 2 11111 1112 5999999963 66778
Q ss_pred EEEeChhh-Hhc-----cCCCeEEEecccCC-----CeEEEEEEECCEEEEE-EEec
Q 024006 116 SLAYDQYS-LKK-----LEPPLVLQEFVNHG-----GVLFKVYIVGEAIKVV-RRFS 160 (274)
Q Consensus 116 ~iv~~~~~-l~~-----l~~p~vvQefI~h~-----g~~~KV~VIG~~v~~~-~R~S 160 (274)
.|.....+ ..+ -+.++|+|||++-+ -..+=+|++|++..+. .|-+
T Consensus 559 ~I~~~~~~~~~~~~g~y~~~~~IyQe~~~lp~f~~~~~~iG~~lvg~~~aGi~iR~~ 615 (652)
T 2vob_A 559 IITSGDGVVHAESGGKYGKRNMIYQQLFELKKQDDYYAIIGGWMIGDAFSGTGIRED 615 (652)
T ss_dssp --------------------CEEEEECCC--CBTTBCCEEEEEEETTEEEEEEEEC-
T ss_pred EEEcCCchhhhhcccccCCCCeEEEecccCCccCCcceEEEEEEECCEEEEEEEecC
Confidence 88754322 122 15789999999842 3467899999999876 7775
No 78
>3pff_A ATP-citrate synthase; phosphohistidine, organic acid, ATP-grAsp, lyase, transferas; HET: TLA ADP; 2.30A {Homo sapiens}
Probab=78.83 E-value=4.1 Score=41.61 Aligned_cols=98 Identities=15% Similarity=0.114 Sum_probs=59.9
Q ss_pred HHHHHHHhccccCCCCCccCCCEEEEecCCCChhHHHHh-cCCC-CcEEEeeCcC-CCCccceeeEEEeChhhHhcc---
Q 024006 54 SMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLK-AGLT-LPLVAKPLVA-DGSAKSHELSLAYDQYSLKKL--- 127 (274)
Q Consensus 54 ~~~~~L~~~~~~~~~~~I~~P~~~~~~~~~~~~~~~l~~-~~l~-~P~VvKp~~a-~Gs~~sh~m~iv~~~~~l~~l--- 127 (274)
..-++|.++..+.. ..+..|++..+... .+..++.+. ..++ +|+|+|+..- +|-..+.+|.+..+.++.++.
T Consensus 10 ~aK~ll~~~~~~~~-~~~~~~~~~~v~~~-~~~~eA~~aa~~lg~~pvVvKaQv~~GgRGKaGGVkL~~s~eEa~~aa~~ 87 (829)
T 3pff_A 10 TGKELLYKFICTTS-AIQNRFKYARVTPD-TDWARLLQDHPWLLSQNLVVKPDQLIKRRGKLGLVGVNLTLDGVKSWLKP 87 (829)
T ss_dssp HHHHHHHHHCCCSS-CBCSTTCCEEECTT-CCHHHHHHHCTHHHHSCEEEEECSSCSCTTTTTCCEEEECHHHHHHHHTT
T ss_pred HHHHHHHHhCcccc-ccccCCceEEeCCC-CCHHHHHHHHHHhCCCCEEEEecccccCCCcCCeEEEECCHHHHHHHHHH
Confidence 34456666533211 12335667777533 233333222 2344 8999999553 344566788888999876542
Q ss_pred ------C--------CCeEEEecccCC-CeEEEEEEECCEE
Q 024006 128 ------E--------PPLVLQEFVNHG-GVLFKVYIVGEAI 153 (274)
Q Consensus 128 ------~--------~p~vvQefI~h~-g~~~KV~VIG~~v 153 (274)
. ..+++|++++++ ++++-+-+.=|+.
T Consensus 88 iLg~~~~~~~p~~~V~gvLVE~m~~~~~~~ElYvgI~~Dr~ 128 (829)
T 3pff_A 88 RLGQEATVGKATGFLKNFLIEPFVPHSQAEEFYVCIYATRE 128 (829)
T ss_dssp TTTCEEEETTEEEECCCEEEEECCCCCGGGEEEEEEEEETT
T ss_pred HHHHHHhhcCCCceEEEEEEEecccCCCccEEEEEEEecCC
Confidence 1 138999999986 7888887776654
No 79
>3n6x_A Putative glutathionylspermidine synthase; domain of unknown function (DUF404), structural genomics; 2.35A {Methylobacillus flagellatus}
Probab=31.40 E-value=32 Score=32.74 Aligned_cols=24 Identities=25% Similarity=0.511 Sum_probs=20.4
Q ss_pred CCceeEEeEEEeCCCCCeEEEEeccC
Q 024006 218 GLRLFNLDIIREHGTRDQFYVIDINY 243 (274)
Q Consensus 218 Gl~l~G~Dvi~~~~~g~~~~ViDVN~ 243 (274)
=+.++|+|++++. +| +++|+|-|.
T Consensus 141 ~~~i~~~Dl~r~~-dG-~~~vlEdn~ 164 (474)
T 3n6x_A 141 YAHIAGVDLVRTG-EN-DFYVLEDNL 164 (474)
T ss_dssp SCSEEEEEEEECS-SS-CEEEEEEEC
T ss_pred EEEEEEEEEEECC-CC-CEEEEEeCC
Confidence 4679999999986 56 699999997
No 80
>3k1t_A Glutamate--cysteine ligase GSHA; putative gamma-glutamylcysteine synthetase; HET: MSE; 1.90A {Methylobacillus flagellatus KT}
Probab=27.28 E-value=1e+02 Score=28.74 Aligned_cols=60 Identities=17% Similarity=0.371 Sum_probs=39.4
Q ss_pred HHHHHHHHHh---CCceeE-EeEEEeCCCCCeEEEEeccCCCC-CCCcc-cchHHHHHHHHHHHHhhcc
Q 024006 208 RLAKELRRQL---GLRLFN-LDIIREHGTRDQFYVIDINYFPG-YGKMP-EYEHIFTDFLLSLTQSRYK 270 (274)
Q Consensus 208 ~lA~~~~~~l---Gl~l~G-~Dvi~~~~~g~~~~ViDVN~fPg-~~g~~-~~~~~l~~~l~~~~~~~~~ 270 (274)
+|=.+.+... .--+++ +|+- .+ |-++.=||.|.||| |-++. ++..+..+++.+.+++.+.
T Consensus 28 ~IE~WFr~~w~~~~~PfY~SVDlR-na--GfKlAPVDtNLFPaGFNNL~~~~~plavqa~~~aiek~cp 93 (432)
T 3k1t_A 28 RIEHWFRSQWQEYGAPFYASVDLR-NA--GFKLAPVDTNLFPGGFNNLNPDFLPLCIQAAMVAVEKICP 93 (432)
T ss_dssp HHHHHHHHHHHHHCCCSEEEEEEE-EC--SSCEEEEEEESSCCCGGGSCGGGHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHhcCCCCceEEEEec-cc--CCccccccccCCCcccccCCHHHHHHHHHHHHHHHHHhCc
Confidence 3334444433 344554 9965 43 33689999999998 77764 5667777777777777653
No 81
>2xko_C PIPX, global nitrogen regulator; transcription, nitrogen assimilation, CRP/FNR superfamily, 2-oxoglutarate, global nitrogen controller; HET: AKG; 2.25A {Synechococcus elongatus} PDB: 2xg8_D*
Probab=26.75 E-value=16 Score=26.67 Aligned_cols=19 Identities=26% Similarity=0.842 Sum_probs=16.0
Q ss_pred EecccCC--CeEEEEEEECCE
Q 024006 134 QEFVNHG--GVLFKVYIVGEA 152 (274)
Q Consensus 134 QefI~h~--g~~~KV~VIG~~ 152 (274)
+.|+||+ |-+|+|..+|+.
T Consensus 4 E~YLNHPtFGlLy~Vc~~~e~ 24 (89)
T 2xko_C 4 ENYLNHPTFGLLYQICSFGDS 24 (89)
T ss_dssp CCEEEETTTEEEEEEEECC-C
T ss_pred cccccCCccchhheeeeCCCc
Confidence 6799997 999999999876
No 82
>3k1t_A Glutamate--cysteine ligase GSHA; putative gamma-glutamylcysteine synthetase; HET: MSE; 1.90A {Methylobacillus flagellatus KT}
Probab=25.46 E-value=2.4e+02 Score=26.33 Aligned_cols=59 Identities=15% Similarity=0.138 Sum_probs=42.2
Q ss_pred c-EEEeeCcCCCCccceeeEEEeChhhHhcc-------------C---CCeEEEecccCC----C--eEEEEEEECCEEE
Q 024006 98 P-LVAKPLVADGSAKSHELSLAYDQYSLKKL-------------E---PPLVLQEFVNHG----G--VLFKVYIVGEAIK 154 (274)
Q Consensus 98 P-~VvKp~~a~Gs~~sh~m~iv~~~~~l~~l-------------~---~p~vvQefI~h~----g--~~~KV~VIG~~v~ 154 (274)
| +|||...| + .+-|+..|.+.+++..+ . ..+++||=|..- + .+-=||-||.+|+
T Consensus 278 PfV~VKADaG--T-YGMGImtV~s~~ev~~LNrK~RnKM~~~Keg~~v~~VIIQEGV~T~E~~~~avAEPVVYmid~~vv 354 (432)
T 3k1t_A 278 PFVIVKADAG--T-YGMGIMTVKSADDVRDLNRKQRNKMSVVKEGLKVSEVILQEGVYTFEHLKDAVAEPVIYMMDHFVV 354 (432)
T ss_dssp CCEEEEEECG--G-GCEEEEEESSGGGGSSCCHHHHHHHHCSSSSSCCCEEEEEECCCCCEEETTEEEEEEEEEETTEEE
T ss_pred ceEEEEcCCC--C-CCceEEEecCHHHHHHHhHHhhhhhhhccCCCccceEEEecCcchhhhhCCccccceEEEECCEEE
Confidence 5 58997764 4 67788889999988764 1 138999988752 1 2345899999998
Q ss_pred EE-EEe
Q 024006 155 VV-RRF 159 (274)
Q Consensus 155 ~~-~R~ 159 (274)
+. .|.
T Consensus 355 GgFyRv 360 (432)
T 3k1t_A 355 GGFYRV 360 (432)
T ss_dssp EEEEEE
T ss_pred EEEEEe
Confidence 75 555
No 83
>2v0f_A Chromodomain-helicase-DNA-binding protein 7; nucleotide-binding, chromatin regulator, charge syndrome, phosphorylation, disease mutation; NMR {Homo sapiens} SCOP: d.76.2.1
Probab=24.30 E-value=23 Score=25.82 Aligned_cols=29 Identities=21% Similarity=0.331 Sum_probs=21.4
Q ss_pred eeeeccCcHH-------HHHHHHHHHHhCCCcEEeCc
Q 024006 13 SFLMQLTGKE-------WRQILEEYRQTHPEVTVLDP 42 (274)
Q Consensus 13 ~ilHK~~~~~-------~~~~l~~y~~~~P~v~Vidp 42 (274)
-+|||.++.. -.+.|++|++.||+ +.++|
T Consensus 20 pVIn~~tGk~L~G~~AP~l~~L~~WL~~nP~-y~v~p 55 (87)
T 2v0f_A 20 PVVNKRNGKKMGGAMAPPMKDLPRWLEENPE-FAVAP 55 (87)
T ss_dssp CEEESSSCCEECSSSSCBGGGHHHHHHHCTT-EEECH
T ss_pred eeEecCCcCcccCCcCchhHHHHHHHHHCCC-ceech
Confidence 4678888742 25799999999998 44554
No 84
>3n5b_B ASR0485 protein; PII, PIPX, transcription regulator, signal transducer; HET: ADP; 1.90A {Nostoc}
Probab=22.50 E-value=24 Score=26.76 Aligned_cols=24 Identities=29% Similarity=0.710 Sum_probs=18.1
Q ss_pred CCeEEEecccCC--CeEEEEEEECCE
Q 024006 129 PPLVLQEFVNHG--GVLFKVYIVGEA 152 (274)
Q Consensus 129 ~p~vvQefI~h~--g~~~KV~VIG~~ 152 (274)
.|+--+.|+||+ |-+|+|..+||.
T Consensus 22 ~~ms~E~YLNHPTFGLLyrVc~~~e~ 47 (112)
T 3n5b_B 22 NPENSETYINHPTWGLLYRICMVDES 47 (112)
T ss_dssp ----CCCEEEETTTEEEEEEEEEETT
T ss_pred CCcchhhhccCCccchheeeeecCCc
Confidence 366778899997 999999999876
Done!