RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 024006
(274 letters)
>gnl|CDD|215508 PLN02941, PLN02941, inositol-tetrakisphosphate 1-kinase.
Length = 328
Score = 489 bits (1262), Expect = e-177
Identities = 191/258 (74%), Positives = 216/258 (83%), Gaps = 3/258 (1%)
Query: 15 LMQLTGKEWRQILEEYRQTHPEVTVLDPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVP 74
L +L GKEWRQ LEEYR+ HP+VTVLDPP AIQ LHNRQSMLQ VAD+ LS+ YG V VP
Sbjct: 71 LHKLYGKEWRQQLEEYREKHPDVTVLDPPDAIQRLHNRQSMLQVVADLKLSDGYGSVGVP 130
Query: 75 RQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKKLEPPLVLQ 134
+QLV+ D SSIPD V AGL PLVAKPLVADGSAKSH++SLAYDQ L KLEPPLVLQ
Sbjct: 131 KQLVVYDDESSIPDAVALAGLKFPLVAKPLVADGSAKSHKMSLAYDQEGLSKLEPPLVLQ 190
Query: 135 EFVNHGGVLFKVYIVGEAIKVVRRFSLPDVTKQDLSTSAGVFRFPRVSCAAASADDAD-- 192
EFVNHGGVLFKVY+VG+ +K VRRFSLPDV++++LS++ GV FPRVS AAASADDAD
Sbjct: 191 EFVNHGGVLFKVYVVGDYVKCVRRFSLPDVSEEELSSAEGVLPFPRVSNAAASADDADNG 250
Query: 193 -LDPCVAELPPRPLLERLAKELRRQLGLRLFNLDIIREHGTRDQFYVIDINYFPGYGKMP 251
LDP VAELPPRP LE LA+ELRR+LGLRLFN D+IREHGT D++YVIDINYFPGY KMP
Sbjct: 251 GLDPEVAELPPRPFLEDLARELRRRLGLRLFNFDMIREHGTGDRYYVIDINYFPGYAKMP 310
Query: 252 EYEHIFTDFLLSLTQSRY 269
YE + TDFLLSL Q +Y
Sbjct: 311 GYETVLTDFLLSLVQKKY 328
>gnl|CDD|114493 pfam05770, Ins134_P3_kin, Inositol 1, 3, 4-trisphosphate
5/6-kinase. This family consists of several inositol 1,
3, 4-trisphosphate 5/6-kinase proteins. Inositol
1,3,4-trisphosphate is at a branch point in inositol
phosphate metabolism. It is dephosphorylated by specific
phosphatases to either inositol 3,4-bisphosphate or
inositol 1,3-bisphosphate. Alternatively, it is
phosphorylated to inositol 1,3,4,6-tetrakisphosphate or
inositol 1,3,4,5-tetrakisphosphate by inositol
trisphosphate 5/6-kinase.
Length = 307
Score = 416 bits (1070), Expect = e-148
Identities = 165/251 (65%), Positives = 194/251 (77%), Gaps = 2/251 (0%)
Query: 15 LMQLTGKEWRQILEEYRQTHPEVTVLDPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVP 74
+ +LT KEWR LEE+R+ HPEV VLDPP AI+ LHNRQSMLQ VAD+NLS G+ VP
Sbjct: 57 IHKLTDKEWRHRLEEFREAHPEVPVLDPPPAIRRLHNRQSMLQVVADLNLSMEDGRFGVP 116
Query: 75 RQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKKLEPPLVLQ 134
Q+V+ +DASS+ KAGLT PL+AKPLVADG+AKSHE+SL YDQ L KL+PPLVLQ
Sbjct: 117 PQVVVMKDASSLSRAGAKAGLTFPLIAKPLVADGTAKSHEMSLVYDQEGLNKLQPPLVLQ 176
Query: 135 EFVNHGGVLFKVYIVGEAIKVVRRFSLPDVTKQDLSTSAGVFRFPRVSCAAASADDADLD 194
EFVNHGGVLFKVY+VGE + VV+R SLPDV+ L S+G FRF +VS ASADDA+LD
Sbjct: 177 EFVNHGGVLFKVYVVGEHVTVVKRRSLPDVSAGTLDRSSGSFRFSQVSNLTASADDAELD 236
Query: 195 --PCVAELPPRPLLERLAKELRRQLGLRLFNLDIIREHGTRDQFYVIDINYFPGYGKMPE 252
+AE+PP P LE LA+ LRR LGLRLFN DIIR+ GT D++ VIDINYFPGY KMPE
Sbjct: 237 KILEIAEMPPDPFLEDLARALRRALGLRLFNFDIIRDAGTADRYLVIDINYFPGYAKMPE 296
Query: 253 YEHIFTDFLLS 263
YE + TDF S
Sbjct: 297 YETVLTDFFWS 307
>gnl|CDD|223267 COG0189, RimK, Glutathione synthase/Ribosomal protein S6
modification enzyme (glutaminyl transferase) [Coenzyme
metabolism / Translation, ribosomal structure and
biogenesis].
Length = 318
Score = 41.2 bits (97), Expect = 3e-04
Identities = 49/249 (19%), Positives = 79/249 (31%), Gaps = 48/249 (19%)
Query: 37 VTVLDPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLT 96
V V++ P +I+ N+ Q +A + VP L+ + V L
Sbjct: 105 VPVINDPQSIRRCRNKLYTTQLLAKA-------GIPVPPTLITRDPDEAAEFV--AEHLG 155
Query: 97 LPLVAKPLVADGSAKSHELSLAYDQYSLKKLE-------PPLVLQEFVNHGGVLFKVYIV 149
P+V KPL G L D L LE +++QE++ + +V
Sbjct: 156 FPVVLKPLDGSGGRGVF-LVEDADPELLSLLETLTQEGRKLIIVQEYIPKAKRDDRRVLV 214
Query: 150 GE----AIKVVRRFSLPDVTKQDLSTSAGVFRFPRVSCAAASADDADLDPCVAELPPRPL 205
G AI + R + +L+ EL
Sbjct: 215 GGGEVVAIYALARIPASGDFRSNLARGGRAEPC--------------------ELTEE-- 252
Query: 206 LERLAKELRRQLGLRLFNLDIIREHGTRDQFYVIDINYFPGYGKMPEYEHIFT--DFLLS 263
E LA + LGL L +DII +D YV ++N P E ++
Sbjct: 253 EEELAVKAAPALGLGLVGVDIIE---DKDGLYVTEVNVSPTGKGEIERVTGVNIAGLIID 309
Query: 264 LTQSRYKKK 272
+ +
Sbjct: 310 AIEKFVRAL 318
>gnl|CDD|222206 pfam13535, ATP-grasp_4, ATP-grasp domain. This family includes a
diverse set of enzymes that possess ATP-dependent
carboxylate-amine ligase activity.
Length = 183
Score = 36.9 bits (86), Expect = 0.005
Identities = 34/187 (18%), Positives = 62/187 (33%), Gaps = 35/187 (18%)
Query: 71 VDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSH------ELSLAYDQYSL 124
+ VP +++ D + + G P+V KP GS EL A +
Sbjct: 17 LPVPPFFLVD-DEEDLDAAAEEIGF--PVVLKPRDGAGSLGVFRVDSAAELEAALAALAA 73
Query: 125 KK-LEPPLVLQEFVNHGGVLFKV--YIVGEAIKVVRRFSLPDVTKQDLSTSAGVFRFPRV 181
+ +++E++ G + V + + + V
Sbjct: 74 EVEDTREYLVEEYI--DGDEYHVDGLVDDGELVFLGVS--------RYLGPPPPDFSEGV 123
Query: 182 SCAAASADDADLDPCVAELPPRPLLERLAKELRRQLGLR--LFNLDIIREHGTRDQFYVI 239
+ S E P L LA+ + + LGLR +F+L+ R ++
Sbjct: 124 ELGSVS---------PGEDPLPEALRELAERVLKALGLRNGVFHLEFFLTPDGR--PVLL 172
Query: 240 DINYFPG 246
+IN PG
Sbjct: 173 EINPRPG 179
>gnl|CDD|221300 pfam11898, DUF3418, Domain of unknown function (DUF3418). This
presumed domain is functionally uncharacterized. This
domain is found in bacteria. This domain is typically
between 582 to 594 amino acids in length. This domain is
found associated with pfam07717, pfam00271, pfam04408.
Length = 586
Score = 31.3 bits (72), Expect = 0.61
Identities = 19/51 (37%), Positives = 29/51 (56%), Gaps = 7/51 (13%)
Query: 196 CVAELPPR--PLLERLAKELRRQLGLRL----FNLDIIREHGTRDQFYVID 240
+ L P PLL+ LA+ELRR G+R+ ++L+ + H R F V+D
Sbjct: 218 FLEALEPGEGPLLDALARELRRMTGVRIPPDDWDLEALPPH-LRMNFRVVD 267
>gnl|CDD|130780 TIGR01719, euk_UDPppase, uridine phosphorylase. This model
represents a clade of mainly eucaryotic uridine
phosphorylases. Genes from human and mouse have been
characterized. This enzyme is a member of the PHP/UDP
subfamily (pfam01048) and is closely related to the
bacterial uridine (TIGR01718) and inosine (TIGR00107)
phosphorylase equivalogs. In addition to the eukaryotes,
a gene from Mycobacterium leprae is included in this
equivalog and may have resulted from lateral gene
transfer [Purines, pyrimidines, nucleosides, and
nucleotides, Salvage of nucleosides and nucleotides].
Length = 287
Score = 30.9 bits (70), Expect = 0.70
Identities = 24/97 (24%), Positives = 41/97 (42%), Gaps = 5/97 (5%)
Query: 100 VAKPLVADGSAKSHELSLAYDQYSLKKLEPPLVLQEFVNHGGVLFKVYIV-GEAIKVVRR 158
V L +S D++++ K+ P L V+HG + + I+ E IK++
Sbjct: 50 VGAELGLSCGRDYPNISERGDRFAMYKVGPVL----CVSHGMGIPSISIMLHELIKLLYY 105
Query: 159 FSLPDVTKQDLSTSAGVFRFPRVSCAAASADDADLDP 195
+ T + TS G+ P ++ A DA L P
Sbjct: 106 ARCKNPTFIRIGTSGGIGVPPGTVVVSSEAVDACLKP 142
>gnl|CDD|181458 PRK08527, PRK08527, acetolactate synthase 3 catalytic subunit;
Validated.
Length = 563
Score = 30.8 bits (70), Expect = 0.80
Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 5/34 (14%)
Query: 21 KEWRQILEEYRQTHP-----EVTVLDPPYAIQHL 49
KEWR+IL+ Y + HP VL P + I+ +
Sbjct: 341 KEWREILKRYNELHPLSYEDSDEVLKPQWVIERV 374
>gnl|CDD|176121 cd08430, PBP2_IlvY, The C-terminal substrate binding of LysR-type
transcriptional regulator IlvY, which activates the
expression of ilvC gene that encoding acetohydroxy acid
isomeroreductase for the biosynthesis of branched amino
acids; contains the type 2 periplasmic binding fold.
In Escherichia coli, IlvY is required for the
regulation of ilvC gene expression that encodes
acetohydroxy acid isomeroreductase (AHIR), a key enzyme
in the biosynthesis of branched-chain amino acids
(isoleucine, valine, and leucine). The ilvGMEDA operon
genes encode remaining enzyme activities required for
the biosynthesis of these amino acids. Activation of
ilvC transcription by IlvY requires the additional
binding of a co-inducer molecule (either
alpha-acetolactate or alpha-acetohydoxybutyrate, the
substrates for AHIR) to a preformed complex of IlvY
protein-DNA. Like many other LysR-family members, IlvY
negatively auto-regulates the transcription of its own
divergently transcribed ilvY gene in an
inducer-independent manner. This substrate-binding
domain has significant homology to the type 2
periplasmic binding proteins (PBP2), which are
responsible for the uptake of a variety of substrates
such as phosphate, sulfate, polysaccharides,
lysine/arginine/ornithine, and histidine. The PBP2 bind
their ligand in the cleft between these domains in a
manner resembling a Venus flytrap. After binding their
specific ligand with high affinity, they can interact
with a cognate membrane transport complex comprised of
two integral membrane domains and two cytoplasmically
located ATPase domains. This interaction triggers the
ligand translocation across the cytoplasmic membrane
energized by ATP hydrolysis.
Length = 199
Score = 29.1 bits (66), Expect = 2.0
Identities = 16/47 (34%), Positives = 22/47 (46%), Gaps = 12/47 (25%)
Query: 11 SFSFLMQLTGKEWRQILEEYRQTHPEVTVL----DPPYAIQHLHNRQ 53
S+SFL ILE +R HP+V + DP AI + N +
Sbjct: 11 SYSFL--------PPILERFRAQHPQVEIKLHTGDPADAIDKVLNGE 49
>gnl|CDD|179554 PRK03204, PRK03204, haloalkane dehalogenase; Provisional.
Length = 286
Score = 29.1 bits (65), Expect = 2.3
Identities = 14/27 (51%), Positives = 17/27 (62%), Gaps = 5/27 (18%)
Query: 197 VAELP-----PRPLLERLAKELRRQLG 218
VAE+P RPLL RLA+E+ LG
Sbjct: 200 VAEMPKQILAARPLLARLAREVPATLG 226
>gnl|CDD|226485 COG3977, COG3977, Alanine-alpha-ketoisovalerate (or
valine-pyruvate) aminotransferase [Amino acid transport
and metabolism].
Length = 417
Score = 29.0 bits (65), Expect = 2.7
Identities = 14/44 (31%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Query: 204 PLLERLAKELRRQLGLRLFNLDIIREHGTRDQFYVIDINYFPGY 247
L++ LAK LRR+ G + +I +G++ F+ + N F G
Sbjct: 78 VLIDALAKMLRREYGWNITAQNIALTNGSQSAFFYL-FNLFAGR 120
>gnl|CDD|239259 cd02961, PDI_a_family, Protein Disulfide Isomerase (PDIa) family,
redox active TRX domains; composed of eukaryotic
proteins involved in oxidative protein folding in the
endoplasmic reticulum (ER) by acting as catalysts and
folding assistants. Members of this family include PDI
and PDI-related proteins like ERp72, ERp57 (or ERp60),
ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI,
ERp57, ERp72, P5, PDIR and ERp46 are all oxidases,
catalyzing the formation of disulfide bonds of newly
synthesized polypeptides in the ER. They also exhibit
reductase activity in acting as isomerases to correct
any non-native disulfide bonds, as well as chaperone
activity to prevent protein aggregation and facilitate
the folding of newly synthesized proteins. These
proteins usually contain multiple copies of a redox
active TRX (a) domain containing a CXXC motif, and may
also contain one or more redox inactive TRX-like (b)
domains. Only one a domain is required for the oxidase
function but multiple copies are necessary for the
isomerase function. The different types of PDIs may show
different substrate specificities and tissue-specific
expression, or may be induced by stress. PDIs are in
their reduced form at steady state and are oxidized to
the active form by Ero1, which is localized in the ER
through ERp44. Some members of this family also contain
a DnaJ domain in addition to the redox active a domains;
examples are ERdj5 and Pfj2. Also included in the family
is the redox inactive N-terminal TRX-like domain of
ERp29.
Length = 101
Score = 27.6 bits (62), Expect = 2.8
Identities = 16/57 (28%), Positives = 25/57 (43%), Gaps = 4/57 (7%)
Query: 203 RPLLERLAKELRRQLGLRLFNLDIIREHGTRDQFYVID---INYFPGYGKMP-EYEH 255
P E+LAKEL+ + + +D + ++ V I FP K P +YE
Sbjct: 34 APEYEKLAKELKGDGKVVVAKVDCTANNDLCSEYGVRGYPTIKLFPNGSKEPVKYEG 90
>gnl|CDD|211907 TIGR04184, ATPgraspMvdD, ATP-grasp ribosomal peptide maturase, MvdD
family. The pair of ATP-grasp proteins MvdD and MvdC
(microviridin D and C), as well as an acetyltransferase,
produce microviridin K, an example of a RiPP
(ribosomally synthesized and posttranslationally
modified peptide). Microviridins are peptidase
inhibitors.
Length = 321
Score = 28.9 bits (65), Expect = 2.9
Identities = 12/38 (31%), Positives = 17/38 (44%), Gaps = 7/38 (18%)
Query: 40 LDPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQL 77
LDP ++ N+Q LQ + L D+PR L
Sbjct: 112 LDPISNVRRAENKQLQLQIARKLGL-------DIPRTL 142
>gnl|CDD|235550 PRK05660, PRK05660, HemN family oxidoreductase; Provisional.
Length = 378
Score = 28.3 bits (64), Expect = 4.0
Identities = 14/26 (53%), Positives = 18/26 (69%), Gaps = 2/26 (7%)
Query: 210 AKELRRQLGLRLFNLDIIREHGTRDQ 235
A +L + LGLR FNLD++ HG DQ
Sbjct: 148 AAKLAQGLGLRSFNLDLM--HGLPDQ 171
>gnl|CDD|182281 PRK10170, PRK10170, hydrogenase 1 large subunit; Provisional.
Length = 597
Score = 28.1 bits (62), Expect = 5.6
Identities = 18/71 (25%), Positives = 34/71 (47%), Gaps = 4/71 (5%)
Query: 56 LQCVADMNLSNSYGKVDVPR----QLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAK 111
+ C +++ S + G V++ R Q +I R A I +V++ L + KP G+
Sbjct: 237 MPCAINIDESGAVGAVNMERLNLVQSIITRTADFINNVMIPDALAIGQFNKPWSEIGTGL 296
Query: 112 SHELSLAYDQY 122
S + L+Y +
Sbjct: 297 SDKCVLSYGAF 307
>gnl|CDD|182106 PRK09841, PRK09841, cryptic autophosphorylating protein tyrosine
kinase Etk; Provisional.
Length = 726
Score = 28.3 bits (63), Expect = 5.8
Identities = 17/72 (23%), Positives = 31/72 (43%), Gaps = 1/72 (1%)
Query: 3 TFLRTFVVSFSFLMQLTGKEWRQILEEYRQTHPEVTVLDPPYAIQHLHNRQSMLQCVADM 62
+ L T + L+Q+ K+ IL P + P IQ L +R + + +A++
Sbjct: 49 SLLSTPIYQADTLVQVEQKQGNAILSGLSDMIPNSSPESAP-EIQLLQSRMILGKTIAEL 107
Query: 63 NLSNSYGKVDVP 74
NL + + P
Sbjct: 108 NLRDIVEQKYFP 119
>gnl|CDD|182986 PRK11131, PRK11131, ATP-dependent RNA helicase HrpA; Provisional.
Length = 1294
Score = 28.1 bits (63), Expect = 6.3
Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 5/41 (12%)
Query: 204 PLLERLAKELRRQLGLRL----FNLDIIREHGTRDQFYVID 240
PLL+ L +ELRR G+ + + D + +H + F V+D
Sbjct: 934 PLLDSLERELRRMTGVTVDREDWQWDQVPDH-LKITFRVVD 973
>gnl|CDD|234348 TIGR03761, ICE_PFL4669, integrating conjugative element protein,
PFL_4669 family. Members of this protein family, such
as PFL4669, are found in integrating conjugative
elements (ICE) of the PFGI-1 class as in Pseudomonas
fluorescens.
Length = 216
Score = 27.3 bits (61), Expect = 7.1
Identities = 24/96 (25%), Positives = 36/96 (37%), Gaps = 24/96 (25%)
Query: 41 DPPYAIQHL--------HNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLK 92
D PYA L RQ M + ++ + +P L + + S P
Sbjct: 54 DDPYADWALLRIEEKLLSARQEMQALLQRLDDLLA----QLPPALDLSENLSVSP----- 104
Query: 93 AGLTLPL-VAKPLVADGSAKSHELSLAYDQYSLKKL 127
LT+PL PL G + L + YDQ + + L
Sbjct: 105 --LTVPLFFRSPL---GYRAVYLL-VDYDQLARRVL 134
>gnl|CDD|235010 PRK02186, PRK02186, argininosuccinate lyase; Provisional.
Length = 887
Score = 27.9 bits (62), Expect = 8.0
Identities = 22/99 (22%), Positives = 39/99 (39%), Gaps = 15/99 (15%)
Query: 71 VDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSA-----KSHELSLAYDQYSLK 125
+DVPR + A ++ GLT P+V KP + GS S + A+ +
Sbjct: 120 IDVPRTHALALRAVALD---ALDGLTYPVVVKPRMGSGSVGVRLCASVAEAAAHCAALRR 176
Query: 126 KLEPPLVLQEFVNHGGVLFKVYIVGEA-----IKVVRRF 159
++Q +V G + V + A + + R+
Sbjct: 177 AGTRAALVQAYVE--GDEYSVETLTVARGHQVLGITRKH 213
>gnl|CDD|236961 PRK11716, PRK11716, DNA-binding transcriptional regulator IlvY;
Provisional.
Length = 269
Score = 27.1 bits (61), Expect = 8.8
Identities = 9/33 (27%), Positives = 16/33 (48%), Gaps = 4/33 (12%)
Query: 25 QILEEYRQTHPEV----TVLDPPYAIQHLHNRQ 53
IL+ +R HP V T D A++ + + +
Sbjct: 84 PILDRFRAEHPLVEIKLTTGDAADAVEKVQSGE 116
>gnl|CDD|214392 CHL00197, carA, carbamoyl-phosphate synthase arginine-specific
small subunit; Provisional.
Length = 382
Score = 27.5 bits (61), Expect = 9.4
Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 4/50 (8%)
Query: 23 WRQI--LEEYRQTH--PEVTVLDPPYAIQHLHNRQSMLQCVADMNLSNSY 68
WRQ L Y Q H P + +D QHL +M C+++ NL+ SY
Sbjct: 94 WRQQESLVSYLQRHKIPFIFGIDTRALTQHLRRFGTMNGCISNQNLNLSY 143
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.323 0.139 0.408
Gapped
Lambda K H
0.267 0.0747 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 14,559,199
Number of extensions: 1430807
Number of successful extensions: 1490
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1486
Number of HSP's successfully gapped: 25
Length of query: 274
Length of database: 10,937,602
Length adjustment: 95
Effective length of query: 179
Effective length of database: 6,723,972
Effective search space: 1203590988
Effective search space used: 1203590988
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 58 (26.1 bits)