RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 024006
(274 letters)
>2q7d_A Inositol-tetrakisphosphate 1-kinase; inositol kinase, ITPK1,
inositol 1,3,4-5/6 phosphate, inositol phosphate,
inositolphosphate; HET: ANP; 1.60A {Homo sapiens} PDB:
2qb5_A* 2odt_X
Length = 346
Score = 267 bits (683), Expect = 6e-89
Identities = 80/260 (30%), Positives = 130/260 (50%), Gaps = 5/260 (1%)
Query: 18 LTGKEWRQILEEYRQTHPEVTVLDPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQL 77
E +EY HPE VLDP AI+ L +R + + + ++ P +
Sbjct: 83 SQSLELVHRFQEYIDAHPETIVLDPLPAIRTLLDRSKSYELIRKIEAYMEDDRICSPPFM 142
Query: 78 VIER-DASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKKLEPPLVLQEF 136
+ ++ K GLT P + K VA G+ SHE+++ ++Q L ++PP V+Q F
Sbjct: 143 ELTSLCGDDTMRLLEKNGLTFPFICKTRVAHGT-NSHEMAIVFNQEGLNAIQPPCVVQNF 201
Query: 137 VNHGGVLFKVYIVGEAIKVVRRFSLPDVTKQDLSTSAGVFRFPRVSCAAASADDADLDPC 196
+NH VL+KV++VGE+ VV+R SL + + + F VS +S+ +LD
Sbjct: 202 INHNAVLYKVFVVGESYTVVQRPSLKNFSAGTSDRESIFFNSHNVSKPESSSVLTELDKI 261
Query: 197 --VAELPPRPLLERLAKELRRQLGLRLFNLDIIREHGTRDQFYVIDINYFPGYGKMPEYE 254
V E P ++ L++ LR+ LG+ LF +DII + T Q VIDIN FPGY + E+
Sbjct: 262 EGVFERPSDEVIRELSRALRQALGVSLFGIDIIINNQT-GQHAVIDINAFPGYEGVSEFF 320
Query: 255 HIFTDFLLSLTQSRYKKKSC 274
+ + ++ Q + +
Sbjct: 321 TDLLNHIATVLQGQSTAMAA 340
>1z2n_X Inositol 1,3,4-trisphosphate 5/6-kinase; inositol phosphate kinase,
ATP-grAsp, transferase; HET: ADP; 1.20A {Entamoeba
histolytica} PDB: 1z2o_X* 1z2p_X*
Length = 324
Score = 231 bits (590), Expect = 2e-75
Identities = 52/263 (19%), Positives = 109/263 (41%), Gaps = 25/263 (9%)
Query: 22 EWRQILEEYRQTHPEVTVLDPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIER 81
+ + +Y + HP+V L+ + +R+ + + + +P ++
Sbjct: 69 KMADEMRKYEKDHPKVLFLESSAIHDMMSSREEINALLIK-------NNIPIPNSFSVKS 121
Query: 82 DASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKKLEPPLVLQEFVNHGG 141
+ ++ L LP + KP A G+ +H++ + +Q + + P + Q ++NH
Sbjct: 122 KEE-VIQLLQSKQLILPFIVKPENAQGTFNAHQMKIVLEQEGIDDIHFPCLCQHYINHNN 180
Query: 142 VLFKVYIVGEAIKVVRRFSLPDVTKQDLST-------SAGVFRFPRV---------SCAA 185
+ KV+ +G +K R SLP+V + + + + +P + A
Sbjct: 181 KIVKVFCIGNTLKWQTRTSLPNVHRCGIKSVDFNNQHLEDILSWPEGVIDKQDIIENSAN 240
Query: 186 ASADDADLDPCVAELPPRPLLERLAKELRRQLGLRLFNLDIIREHGTRDQFYVIDINYFP 245
DP + L + LA ++R LG++L +D I+E+ + V+D+N FP
Sbjct: 241 RFGSKILEDPILLNLTSEAEMRDLAYKVRCALGVQLCGIDFIKENEQGN-PLVVDVNVFP 299
Query: 246 GYGKMPEYEHIFTDFLLSLTQSR 268
YG +++ L T+
Sbjct: 300 SYGGKVDFDWFVEKVALCYTEVA 322
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 45.0 bits (106), Expect = 2e-05
Identities = 58/313 (18%), Positives = 92/313 (29%), Gaps = 117/313 (37%)
Query: 5 LRTFVVS-----FSFLMQLTGKEW---RQILEEYRQTHPEVT----VLDPPYAIQHLHNR 52
R +S L + + Q+ E++ + PE T D P L +
Sbjct: 6 TRPLTLSHGSLEHVLL--VPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGK 63
Query: 53 QSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLT------LPLVAKPLVA 106
L V+ ++E D VL LT L
Sbjct: 64 --FLGYVSS----------------LVEPSKVGQFDQVLNLCLTEFENCYL--------- 96
Query: 107 DGSAKSHELSLAYDQYSLKKLEPPLVLQEFVNHGGVLFKVYIVGEAIKVVRRFSLPDVTK 166
H +LA L + +++ L K YI A + +R P K
Sbjct: 97 -EGNDIH--ALA---AKLLQENDTTLVKTK-----ELIKNYI--TARIMAKR---P-FDK 139
Query: 167 QDLSTSAGVFRFPRVSCAAASADDADL----------DPCVAEL-----PPRPLLERLAK 211
+ S SA +FR A +A L D EL L+ L K
Sbjct: 140 K--SNSA-LFR-------AVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIK 189
Query: 212 ELRRQLGLRLFNLDIIREHGTRDQFY--VIDINYF---PGYGKMPEYEHIFTDFLLS--- 263
L ++IR ++ + ++I + P P+ D+LLS
Sbjct: 190 FSAETL------SELIRTTLDAEKVFTQGLNILEWLENP--SNTPD-----KDYLLSIPI 236
Query: 264 ------LTQ-SRY 269
+ Q + Y
Sbjct: 237 SCPLIGVIQLAHY 249
Score = 34.6 bits (79), Expect = 0.036
Identities = 37/222 (16%), Positives = 67/222 (30%), Gaps = 64/222 (28%)
Query: 4 FLRTFVVSF--SFLMQLTGKEWRQILEEYRQTHPEVTVLDPPYAIQHLHNRQSMLQCVAD 61
+L + +S ++QL Y T ++ P +L +
Sbjct: 230 YLLSIPISCPLIGVIQLA---------HYVVTA-KLLGFTPGELRSYL---KGATGHSQG 276
Query: 62 MNLSNSYGKVDVPRQLVI--ERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAY 119
+ + I S V KA +T+ L G + +E AY
Sbjct: 277 -----------LVTAVAIAETDSWESFFVSVRKA-ITV------LFFIG-VRCYE---AY 314
Query: 120 DQYSLKKLEPPLVLQEFVNHG-GV----LFKVYIVGEAIKVVRRFSLPDVTKQDLSTSAG 174
SL PP +L++ + + GV L + + V T++
Sbjct: 315 PNTSL----PPSILEDSLENNEGVPSPML-----------SISNLTQEQVQDYVNKTNSH 359
Query: 175 VFRFPRVSCAAASADDADLDPCVAELPPRPLLERLAKELRRQ 216
+ +V + + V PP+ L L LR+
Sbjct: 360 LPAGKQVEISLVNGAKN----LVVSGPPQS-LYGLNLTLRKA 396
Score = 33.5 bits (76), Expect = 0.074
Identities = 34/244 (13%), Positives = 78/244 (31%), Gaps = 87/244 (35%)
Query: 62 MNLSNSYGKVDVPRQLVIERDAS-------SIPDVVLKAGLTLPLVAKPLVADGSAKSHE 114
M+L Y + + D SI D+V+ + L + G K
Sbjct: 1633 MDL---YKTSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNL------TIHFGGEKGKR 1683
Query: 115 L-----SLAYDQYSLKKLEPPLVLQE---------FVNHGGVLFK-------VYIVGEAI 153
+ ++ ++ KL+ + +E F + G+L + ++ +A
Sbjct: 1684 IRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEKAA 1743
Query: 154 -KVVR-RFSLPDVTKQD-------------LSTSAGVFRF------------------PR 180
+ ++ + +P D L++ A V PR
Sbjct: 1744 FEDLKSKGLIPA----DATFAGHSLGEYAALASLADVMSIESLVEVVFYRGMTMQVAVPR 1799
Query: 181 VSCAAASADDADLDP-CVAELPPRPLLERLAKELRRQLGLRL----FNLDIIREHGTRDQ 235
++ ++P VA + L+ + + + ++ G + +N++ +Q
Sbjct: 1800 DELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWLVEIVNYNVE--------NQ 1851
Query: 236 FYVI 239
YV
Sbjct: 1852 QYVA 1855
>1uc8_A LYSX, lysine biosynthesis enzyme; alpha-aminoadipate pathway, riken
structural genomics/proteomics initiative, RSGI,
structural genomics; 2.00A {Thermus thermophilus} SCOP:
c.30.1.6 d.142.1.7 PDB: 1uc9_A*
Length = 280
Score = 43.2 bits (102), Expect = 4e-05
Identities = 32/219 (14%), Positives = 71/219 (32%), Gaps = 46/219 (21%)
Query: 37 VTVLDPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLT 96
+ V++ P I+ ++ + +A + P+ + D ++ G
Sbjct: 74 IPVVNRPEVIEACGDKWATSVALAKAG-------LPQPKTALAT-DREEALRLMEAFGY- 124
Query: 97 LPLVAKPL-------VADGSAKSHELSLAYDQYSLKKLE-PPLVLQEFVNHGGVLFKVYI 148
P+V KP+ +A + L + +QE+V G +V++
Sbjct: 125 -PVVLKPVIGSWGRLLAXXXXXXXXXXXXXXKEVLGGFQHQLFYIQEYVEKPGRDIRVFV 183
Query: 149 VG-EAIKVVRRFSLPDVTKQDLSTSAGVFRFPRVSCAAASADDADLDPCVAELPPRPLLE 207
VG AI + R + + +A + C P +
Sbjct: 184 VGERAIAAIYR-------------RSAHWI-------TNTARGGQAENC----PLTEEVA 219
Query: 208 RLAKELRRQLGLRLFNLDIIREHGTRDQFYVIDINYFPG 246
RL+ + +G + +D+ + V ++N+
Sbjct: 220 RLSVKAAEAVGGGVVAVDLFE---SERGLLVNEVNHTME 255
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 42.1 bits (98), Expect = 1e-04
Identities = 45/322 (13%), Positives = 93/322 (28%), Gaps = 95/322 (29%)
Query: 15 LMQLTGKEWRQILEEY--RQTHPEVTVLDPPYAIQHLHNRQSMLQC-------------V 59
++++ K QI + R H + I + L V
Sbjct: 198 VLEMLQKLLYQIDPNWTSRSDHSS----NIKLRIHSIQAELRRLLKSKPYENCLLVLLNV 253
Query: 60 ADMNLSNSYGKVDVP-RQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLA 118
+ N++ ++ + L+ R + D + A T + + + L L
Sbjct: 254 QNAKAWNAF---NLSCKILLTTRFKQ-VTDFLSAATTTHISLDHHSMTLTPDEVKSLLLK 309
Query: 119 YDQYSLKKLEP------PLV-------LQEFVNHGGVLFKVY--IVGEAIKVVRRFSL-- 161
Y + L P +++ + + + + + + + SL
Sbjct: 310 YLDCRPQDLPREVLTTNPRRLSIIAESIRDGLAT----WDNWKHVNCDKLTTIIESSLNV 365
Query: 162 --PDVTKQ---DLSTSAGVFR---------FPRVSCAAASADDADLDPCVAELPPRPLLE 207
P ++ LS VF + +D + V +L L+E
Sbjct: 366 LEPAEYRKMFDRLS----VFPPSAHIPTILLSLIWFDVIKSDVMVV---VNKLHKYSLVE 418
Query: 208 RLAKELR-----RQLGLRLFNLD-------IIREHGTRDQFYVIDI------NYF---PG 246
+ KE L L++ + I+ + F D+ YF G
Sbjct: 419 KQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIG 478
Query: 247 Y--------GKMPEYEHIFTDF 260
+ +M + +F DF
Sbjct: 479 HHLKNIEHPERMTLFRMVFLDF 500
Score = 29.4 bits (65), Expect = 1.5
Identities = 56/327 (17%), Positives = 100/327 (30%), Gaps = 108/327 (33%)
Query: 6 RTFVVSFSFLMQLTGKEWRQILEEY----RQTHPEVTVLDPPYAI----QHLHNRQSMLQ 57
T + M LT E + +L +Y Q P + P + + + + +
Sbjct: 286 TTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWD 345
Query: 58 CVADMN-------LSNSYGKVDVP-------RQLVIERDASSIPDVVLKA---------- 93
+N + +S ++ P +L + ++ IP ++L
Sbjct: 346 NWKHVNCDKLTTIIESSLNVLE-PAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDV 404
Query: 94 -GLTLPLVAKPLVADGSAKS----HELSLAY---------------DQYSLKK------L 127
+ L LV +S + L D Y++ K L
Sbjct: 405 MVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDL 464
Query: 128 EPPLVLQEFVNHGGVLFKVYIVGEAIKVVRRFSLPDVTKQDLSTSAGVFRFP----RVSC 183
PP + Q F +H G K E + + R L D FRF R
Sbjct: 465 IPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFL-D------------FRFLEQKIRHDS 511
Query: 184 AAASADDADLDPCVAELPPRPLLERLAKELRRQLGLRLFNLDIIREHGTRDQFYVIDINY 243
A +A + L+ L++ L+ + I ++ V I
Sbjct: 512 TAWNASGSILN----------TLQQ----------LKFYKPYICDNDPKYER-LVNAILD 550
Query: 244 FPGYGKMPEYEHI-----FTDFL-LSL 264
F +P+ E +TD L ++L
Sbjct: 551 F-----LPKIEENLICSKYTDLLRIAL 572
>2pn1_A Carbamoylphosphate synthase large subunit; ZP_00538348.1, ATP-grAsp
domain, carbamoylphosphate synthase subunit (split gene
in MJ); 2.00A {Exiguobacterium sibiricum}
Length = 331
Score = 40.6 bits (95), Expect = 3e-04
Identities = 31/208 (14%), Positives = 67/208 (32%), Gaps = 39/208 (18%)
Query: 37 VTVLDPPY-AIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGL 95
VTV+ PY A + ++ +M + + R +S + + +
Sbjct: 99 VTVIVSPYAACELCFDKYTMYEYCLRQG-------IAHAR---TYATMASFEEALAAGEV 148
Query: 96 TLPLVAKPLVADGSAKSHELSLAYDQYSLKKLEPPLVLQEFVNHGGVLFKVYIVGEAIKV 155
LP+ KP S + + + L L++QE +VG+ + V
Sbjct: 149 QLPVFVKPRNGSASIEVRRVETVEEVEQLFSKNTDLIVQE-----------LLVGQELGV 197
Query: 156 VRRFSLPDVTKQDLSTSAGVFRFPRVSCAAASADDADLDPCVAELPPRPLLERLAKELRR 215
+ D+ +++ + + + + R + L + +
Sbjct: 198 ---DAYVDLISGKVTSIFIKEKLTMRAG----------ETDKSRSVLRDDVFELVEHVLD 244
Query: 216 QLGLR-LFNLDIIREHGTRDQFYVIDIN 242
GL + D+ G Y+ +IN
Sbjct: 245 GSGLVGPLDFDLFDVAG---TLYLSEIN 269
>3t7a_A Inositol pyrophosphate kinase; ATP-grAsp fold, transferase; HET:
ADP; 1.70A {Homo sapiens} PDB: 3t9a_A* 3t9b_A* 3t9c_A*
3t9d_A* 3t9e_A* 3t9f_A* 3t54_A* 3t99_A*
Length = 330
Score = 38.8 bits (90), Expect = 0.001
Identities = 45/257 (17%), Positives = 82/257 (31%), Gaps = 63/257 (24%)
Query: 49 LHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAG----------LTLP 98
+ +R+ + + + +PR ++ RD ++ + L G P
Sbjct: 95 IQDRREVYSILQAEG-------ILLPRYAILNRDPNNPKECNLIEGEDHVEVNGEVFQKP 147
Query: 99 LVAKPLVAD--------------GSA----KSHELSLAYDQYSLKKLEPPLVLQEFVNHG 140
V KP+ A+ GS K S Y S + + +EF+
Sbjct: 148 FVEKPVSAEDHNVYIYYPTSAGGGSQRLFRKIGSRSSVYSPESNVRKTGSYIYEEFMPTD 207
Query: 141 GVLFKVYIVG-EAIKVVRRFSLPDVTKQDLSTSAGVFRFPRVSCAAASADDADLDPCVAE 199
G KVY VG + R S K + + R+P
Sbjct: 208 GTDVKVYTVGPDYAHAEARKSPALDGKVERDSEGKEVRYP------------------VI 249
Query: 200 LPPRPLLERLAKELRRQLGLRLFNLDIIREHGTRDQFYVIDINYFPGYGKMPEY----EH 255
L R + +A ++ + D++R +G Q YV D+N F +Y
Sbjct: 250 LNAR--EKLIAWKVCLAFKQTVCGFDLLRANG---QSYVCDVNGFSFVKNSMKYYDDCAK 304
Query: 256 IFTDFLLSLTQSRYKKK 272
I + ++ ++
Sbjct: 305 ILGNIVMRELAPQFHIP 321
>1ybh_A Acetolactate synthase, chloroplast; acetohydroxyacid synthase,
herbicide, sulfonylurea, thiamin diphosphate, FAD,
inhibitor; HET: CIE NHE FAD P22; 2.50A {Arabidopsis
thaliana} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1yhy_A*
1yhz_A* 1yi0_A* 1yi1_A* 1z8n_A* 3ea4_A* 3e9y_A*
Length = 590
Score = 30.6 bits (70), Expect = 0.59
Identities = 10/35 (28%), Positives = 13/35 (37%), Gaps = 5/35 (14%)
Query: 21 KEWRQILEEYRQTHP-----EVTVLDPPYAIQHLH 50
WR L +Q P + P YAI+ L
Sbjct: 353 GVWRNELNVQKQKFPLSFKTFGEAIPPQYAIKVLD 387
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 29.1 bits (64), Expect = 0.84
Identities = 13/67 (19%), Positives = 20/67 (29%), Gaps = 39/67 (58%)
Query: 120 DQYSLKKLEPPLVLQEFVNHGGVLFKVYIVGEAIKVVRRFSLPDVTKQDLSTSAGVFRFP 179
++ +LKKL+ L K+Y A D SA P
Sbjct: 18 EKQALKKLQASL-------------KLY----A---------DD--------SA-----P 38
Query: 180 RVSCAAA 186
++ A
Sbjct: 39 ALAIKAT 45
>3quf_A Extracellular solute-binding protein, family 1; structural
genomics, PSI-biology, midwest center for structu
genomics, MCSG; HET: MSE; 1.70A {Bifidobacterium longum
subsp}
Length = 414
Score = 29.0 bits (65), Expect = 1.6
Identities = 4/27 (14%), Positives = 15/27 (55%)
Query: 13 SFLMQLTGKEWRQILEEYRQTHPEVTV 39
SF + ++++ + + +P++T+
Sbjct: 33 SFYSYFKDNQIGEVVKGFEKKNPDITL 59
>3lr0_A Sensor protein; niaid, seattle structural genomics center for
infectious DIS ssgcid, PH, RISS, iodide phased,
burkholder melioidosis; 1.90A {Burkholderia
pseudomallei} PDB: 3lr3_A 3lr5_A
Length = 143
Score = 28.0 bits (62), Expect = 2.0
Identities = 13/72 (18%), Positives = 26/72 (36%), Gaps = 14/72 (19%)
Query: 167 QDLSTSAGVFRFPRVSCAAASADDADLDPCVAELPPRPLLERLAKELRRQLGLRLFNLDI 226
QDL ++ GV +PR + D P + + ++R +LG + I
Sbjct: 63 QDLESNEGVRVYPR--------EKTDK---FKLQPDESVNRLIEHDIRSRLGD---DTVI 108
Query: 227 IREHGTRDQFYV 238
+ ++
Sbjct: 109 AQSVNDIPGVWI 120
>2pan_A Glyoxylate carboligase; thiamin-diphosphate (THDP),
thimain-dependent enzymes, FAD, lyase; HET: FAD TDP 1PE;
2.70A {Escherichia coli}
Length = 616
Score = 28.7 bits (65), Expect = 2.3
Identities = 5/35 (14%), Positives = 14/35 (40%), Gaps = 5/35 (14%)
Query: 21 KEWRQILEEYRQTHP-----EVTVLDPPYAIQHLH 50
KEW ++ ++T + + P + ++
Sbjct: 369 KEWVADCQQRKRTLLRKTHFDNVPVKPQRVYEEMN 403
>3te8_A Sensor histidine kinase RISS; structural genomics, seattle
structural genomics center for infectious disease,
ssgcid; 1.70A {Burkholderia pseudomallei} PDB: 3lr4_A
Length = 127
Score = 27.6 bits (61), Expect = 2.5
Identities = 13/72 (18%), Positives = 26/72 (36%), Gaps = 14/72 (19%)
Query: 167 QDLSTSAGVFRFPRVSCAAASADDADLDPCVAELPPRPLLERLAKELRRQLGLRLFNLDI 226
QDL ++ GV +PR + D P + + ++R +LG + I
Sbjct: 47 QDLESNEGVRVYPR--------EKTDK---FKLQPDESVNRLIEHDIRSRLGD---DTVI 92
Query: 227 IREHGTRDQFYV 238
+ ++
Sbjct: 93 AQSVNDIPGVWI 104
>1t9b_A Acetolactate synthase, mitochondrial; acetohydroxyacid synthase,
herbicide, sulfonylurea, thiamin diphosphate, FAD,
inhibitor; HET: 1CS P25 FAD NSP P22 YF3; 2.20A
{Saccharomyces cerevisiae} SCOP: c.31.1.3 c.36.1.5
c.36.1.9 PDB: 1n0h_A* 1t9a_A* 1t9c_A* 1t9d_A* 1jsc_A*
Length = 677
Score = 28.4 bits (64), Expect = 3.0
Identities = 6/37 (16%), Positives = 15/37 (40%), Gaps = 7/37 (18%)
Query: 21 KEWRQILEEYRQTHP-------EVTVLDPPYAIQHLH 50
EW + ++++ +P + + P I+ L
Sbjct: 435 SEWFAQINKWKKEYPYAYMEETPGSKIKPQTVIKKLS 471
>1gpu_A Transketolase; transferase(ketone residues); HET: THD; 1.86A
{Saccharomyces cerevisiae} SCOP: c.36.1.6 c.36.1.10
c.48.1.1 PDB: 1ngs_A* 1trk_A* 1ay0_A* 1tkb_A* 1tka_A*
1tkc_A*
Length = 680
Score = 27.1 bits (61), Expect = 8.8
Identities = 5/16 (31%), Positives = 10/16 (62%)
Query: 21 KEWRQILEEYRQTHPE 36
+W ++ EY++ PE
Sbjct: 310 NKWNKLFSEYQKKFPE 325
>2kkc_A Sequestosome-1; P62, PB1, autophagy, ubiquitin-proteasome system,
NF-KB signaling, alternative splicing, apoptosis,
cytoplasm, differentiation; NMR {Rattus norvegicus} PDB:
2ktr_B
Length = 102
Score = 25.4 bits (55), Expect = 9.4
Identities = 12/42 (28%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
Query: 142 VLFKVYIVG--EAIKVVRRFSLPDVTKQDLSTSAGVFRFPRV 181
+ K Y++G EA + +RRFS + + +AG R+
Sbjct: 6 LTVKAYLLGKEEAAREIRRFSFCFSPEPEAEAAAGPGPCERL 47
>2iht_A Carboxyethylarginine synthase; thiamin diphosphate complex,
transferase; HET: MSE TPP; 2.00A {Streptomyces
clavuligerus} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB:
1upb_A* 1upc_A* 1upa_A* 2ihu_A* 2ihv_A*
Length = 573
Score = 26.7 bits (60), Expect = 9.8
Identities = 3/31 (9%), Positives = 9/31 (29%), Gaps = 1/31 (3%)
Query: 21 KEWRQILEEYRQTHPEVT-VLDPPYAIQHLH 50
+ R + E+ + I ++
Sbjct: 362 EPLRARIAEFLADPETYEDGMRVHQVIDSMN 392
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.323 0.139 0.408
Gapped
Lambda K H
0.267 0.0732 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,386,514
Number of extensions: 271320
Number of successful extensions: 790
Number of sequences better than 10.0: 1
Number of HSP's gapped: 773
Number of HSP's successfully gapped: 35
Length of query: 274
Length of database: 6,701,793
Length adjustment: 92
Effective length of query: 182
Effective length of database: 4,133,061
Effective search space: 752217102
Effective search space used: 752217102
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (25.3 bits)