RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= 024006
         (274 letters)



>d1yoba1 c.23.5.1 (A:1-179) Flavodoxin {Azotobacter vinelandii
           [TaxId: 354]}
          Length = 179

 Score = 27.7 bits (61), Expect = 1.2
 Identities = 9/73 (12%), Positives = 24/73 (32%), Gaps = 5/73 (6%)

Query: 207 ERLAKELRRQLGLRLFNLDIIREHGTRDQFYVIDINYFPGYGKMPE-----YEHIFTDFL 261
           + + K    +      N++ +         ++I      G G++P          + +FL
Sbjct: 19  KSIKKRFDDETMSDALNVNRVSAEDFAQYQFLILGTPTLGEGELPGLSSDAENESWEEFL 78

Query: 262 LSLTQSRYKKKSC 274
             +    +  K+ 
Sbjct: 79  PKIEGLDFSGKTV 91


>d1y0za_ b.82.2.8 (A:) Clavaminate synthase-like protein At3g21360
           {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
          Length = 327

 Score = 27.9 bits (61), Expect = 1.2
 Identities = 13/62 (20%), Positives = 18/62 (29%), Gaps = 3/62 (4%)

Query: 84  SSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKKLEPPLVLQEFVNHGGVL 143
           + IP          P V  P  A     +  L L        K +   +       G VL
Sbjct: 6   TPIPQQKHYESKPFPAVISPPSASIPIPALSLPLFTQ---TIKTQKHYLDSLLHESGAVL 62

Query: 144 FK 145
           F+
Sbjct: 63  FR 64


>d1r9ja2 c.36.1.10 (A:1-336) Transketolase (TK), PP module
           {Leishmania mexicana mexicana [TaxId: 44270]}
          Length = 336

 Score = 27.5 bits (60), Expect = 1.7
 Identities = 5/16 (31%), Positives = 8/16 (50%)

Query: 21  KEWRQILEEYRQTHPE 36
           K W ++L +Y    P 
Sbjct: 307 KAWEELLAKYTAAFPA 322


>d1ktba2 c.1.8.1 (A:1-293) Melibiase {Chicken (Gallus gallus)
           [TaxId: 9031]}
          Length = 293

 Score = 27.5 bits (60), Expect = 1.9
 Identities = 19/69 (27%), Positives = 32/69 (46%), Gaps = 3/69 (4%)

Query: 190 DADLDPCVAELPPRPLLERLAKELRRQLGLRLFNLDIIREHGTRDQF--YVIDINYFP-G 246
             D   C++E+    + +R+A++  R+LG +  N+D       RD     V D   FP G
Sbjct: 26  REDPRQCISEMLFMEMADRIAEDGWRELGYKYINIDDCWAAKQRDAEGRLVPDPERFPRG 85

Query: 247 YGKMPEYEH 255
              + +Y H
Sbjct: 86  IKALADYVH 94


>d1wy5a2 d.229.1.1 (A:217-311) TilS-like protein Aq_1887 {Aquifex
          aeolicus [TaxId: 63363]}
          Length = 95

 Score = 26.3 bits (58), Expect = 1.9
 Identities = 9/73 (12%), Positives = 27/73 (36%), Gaps = 3/73 (4%)

Query: 14 FLMQLTGKEWRQILEEYRQTHPEVTVLDPP---YAIQHLHNRQSMLQCVADMNLSNSYGK 70
          FL +   K ++++ +       ++           I+     +   +     +L    G+
Sbjct: 20 FLEEEAQKLYKEVKKGNCLDVKKLKEKPLALQRRVIRKFIGEKDYEKVELVRSLLEKGGE 79

Query: 71 VDVPRQLVIERDA 83
          V++ +  V++R  
Sbjct: 80 VNLGKGKVLKRKE 92


>d1gpua1 c.36.1.10 (A:3-337) Transketolase (TK), PP module {Baker's
           yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 335

 Score = 27.0 bits (59), Expect = 2.5
 Identities = 5/16 (31%), Positives = 10/16 (62%)

Query: 21  KEWRQILEEYRQTHPE 36
            +W ++  EY++  PE
Sbjct: 308 NKWNKLFSEYQKKFPE 323


>d1itza1 c.36.1.10 (A:10-347) Transketolase (TK), PP module {Maize
           (Zea mays) [TaxId: 4577]}
          Length = 338

 Score = 27.1 bits (59), Expect = 2.5
 Identities = 3/16 (18%), Positives = 7/16 (43%)

Query: 21  KEWRQILEEYRQTHPE 36
            +W     EY + + +
Sbjct: 311 ADWNAKFAEYEKKYAD 326


>d1uc8a2 d.142.1.7 (A:89-280) Lysine biosynthesis enzyme LysX
           ATP-binding domain {Thermus thermophilus [TaxId: 274]}
          Length = 192

 Score = 26.5 bits (57), Expect = 3.1
 Identities = 2/16 (12%), Positives = 7/16 (43%)

Query: 232 TRDQFYVIDINYFPGY 247
           +     V ++N+   +
Sbjct: 153 SERGLLVNEVNHTMEF 168


>d3thia_ c.94.1.1 (A:) Thiaminase I {Paenibacillus thiaminolyticus
          [TaxId: 49283]}
          Length = 362

 Score = 26.6 bits (57), Expect = 3.2
 Identities = 3/17 (17%), Positives = 10/17 (58%)

Query: 23 WRQILEEYRQTHPEVTV 39
             +L+++++  P V +
Sbjct: 18 QAAVLDQWQRQEPGVKL 34


>d2r8oa2 c.36.1.10 (A:2-332) Transketolase (TK), PP module
           {Escherichia coli [TaxId: 562]}
          Length = 331

 Score = 26.3 bits (57), Expect = 4.2
 Identities = 3/16 (18%), Positives = 7/16 (43%)

Query: 21  KEWRQILEEYRQTHPE 36
             W +    Y + +P+
Sbjct: 304 SAWNEKFAAYAKAYPQ 319


>d1wgpa_ b.82.3.2 (A:) Probable cyclic nucleotide-gated ion channel
           6 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
          Length = 137

 Score = 25.3 bits (54), Expect = 6.7
 Identities = 4/28 (14%), Positives = 12/28 (42%)

Query: 10  VSFSFLMQLTGKEWRQILEEYRQTHPEV 37
           ++      L   E + +  ++R++ P  
Sbjct: 109 LTEVEAFALIADELKFVASQFRRSGPSS 136


>d2b7ma1 a.118.17.2 (A:73-623) Exocyst complex component EXO70
           {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 551

 Score = 25.7 bits (56), Expect = 7.9
 Identities = 10/69 (14%), Positives = 24/69 (34%), Gaps = 10/69 (14%)

Query: 13  SFLMQLTGKEWRQILEEYRQTHPEVTVLDPPYAIQHLHNRQSMLQCVADMNLSNSYGKVD 72
           S L  +   E    LE  ++ +              + + + +   + D    +S GK  
Sbjct: 418 SELNLMLAGEGHSRLERLKKRY----------ISYMVSDWRDLTANLMDSVFIDSSGKKS 467

Query: 73  VPRQLVIER 81
             ++ + E+
Sbjct: 468 KDKEQIKEK 476


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.323    0.139    0.408 

Gapped
Lambda     K      H
   0.267   0.0405    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,051,516
Number of extensions: 49730
Number of successful extensions: 158
Number of sequences better than 10.0: 1
Number of HSP's gapped: 158
Number of HSP's successfully gapped: 14
Length of query: 274
Length of database: 2,407,596
Length adjustment: 84
Effective length of query: 190
Effective length of database: 1,254,276
Effective search space: 238312440
Effective search space used: 238312440
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.7 bits)