BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 024008
(274 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3LCC|A Chain A, Structure Of A Sam-Dependent Halide Methyltransferase From
Arabidopsis Thaliana
Length = 235
Score = 290 bits (741), Expect = 7e-79, Method: Compositional matrix adjust.
Identities = 138/223 (61%), Positives = 170/223 (76%), Gaps = 4/223 (1%)
Query: 46 KNREEVENDNVIKSHPRVNKLQQLMH-IESSGGWEKCWEEGLTPWDIGQPAPIIVHLHQS 104
+N ++ NVI P ++ +H GGWEKCWEE +TPWD G+ P+IVHL +
Sbjct: 6 QNSDQSNGGNVI---PTPEEVATFLHKTVEEGGWEKCWEEEITPWDQGRATPLIVHLVDT 62
Query: 105 GALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKA 164
+LP GRALVPGCG G+DVVAMASPER+VVGL+IS+ A+ KA E S P A++ SF+K
Sbjct: 63 SSLPLGRALVPGCGGGHDVVAMASPERFVVGLDISESALAKANETYGSSPKAEYFSFVKE 122
Query: 165 DFFTWCPTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPP 224
D FTW PTELFDLIFDY FFCAIEPEMR AWA+ + + LKPDGELITLM+PI+DHVGGPP
Sbjct: 123 DVFTWRPTELFDLIFDYVFFCAIEPEMRPAWAKSMYELLKPDGELITLMYPITDHVGGPP 182
Query: 225 YKVSVSDYEEVLQPMGFQAISIVDNKLAIGPRKGREKLGRWKR 267
YKV VS +EEVL P+GF+A+S+ +N AI RKG+EKLGRWK+
Sbjct: 183 YKVDVSTFEEVLVPIGFKAVSVEENPHAIPTRKGKEKLGRWKK 225
>pdb|3MGG|A Chain A, Crystal Structure Of Methyl Transferase From
Methanosarcina Mazei
pdb|3MGG|B Chain B, Crystal Structure Of Methyl Transferase From
Methanosarcina Mazei
Length = 276
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 59/117 (50%), Gaps = 9/117 (7%)
Query: 101 LHQSGALPKG-RALVPGCGTGYDVVAMA--SPERYVVGLEISDIAIKKAEELSSSLPNAK 157
LH P G + L GCG G V +A +P+ + ++IS +++KA E ++ K
Sbjct: 29 LHHDTVYPPGAKVLEAGCGIGAQTVILAKNNPDAEITSIDISPESLEKARE-NTEKNGIK 87
Query: 158 FVSFLKADFFTWCPTELFDLIFDYTFFCAIEPEMRA--AWAQKIKDFLKPDGELITL 212
V FL+A+ F+ P E D FD+ F C + +++ + +K LKP G + +
Sbjct: 88 NVKFLQANIFSL-PFE--DSSFDHIFVCFVLEHLQSPEEALKSLKKVLKPGGTITVI 141
>pdb|3L8D|A Chain A, Crystal Structure Of Methyltransferase From Bacillus
Thuringiensis
Length = 242
Score = 42.0 bits (97), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 38/131 (29%), Positives = 58/131 (44%), Gaps = 9/131 (6%)
Query: 89 WDIGQPAPIIVHLHQSGALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEE 148
WD G + II Q + L GCG GY ++ VG++IS++ I+K +E
Sbjct: 35 WDSGSRSTIIPFFEQY-VKKEAEVLDVGCGDGYGTYKLSRTGYKAVGVDISEVXIQKGKE 93
Query: 149 LSSSLPNAKFVSFLKADFFTW-CPTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDG 207
P+ +SF+K D + E F+ I E +RA +IK LK DG
Sbjct: 94 RGEG-PD---LSFIKGDLSSLPFENEQFEAIXAINSLEWTEEPLRA--LNEIKRVLKSDG 147
Query: 208 -ELITLMFPIS 217
I ++ P +
Sbjct: 148 YACIAILGPTA 158
>pdb|1PJZ|A Chain A, Solution Structure Of Thiopurine Methyltransferase From
Pseudomonas Syringae
Length = 203
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/137 (24%), Positives = 58/137 (42%), Gaps = 18/137 (13%)
Query: 107 LPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPN----AKFVSFL 162
+P R LVP CG D+ ++ +VVG E+S+ A+++ P+ F +
Sbjct: 21 VPGARVLVPLCGKSQDMSWLSGQGYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYA 80
Query: 163 KADFFTWCPTELFDL----------IFDYTFFCAIEPEMRAAWAQKIKDFL--KPDGELI 210
WC + F L +D A+ +MR + Q ++ + G LI
Sbjct: 81 APGIEIWC-GDFFALTARDIGHCAAFYDRAAMIALPADMRERYVQHLEALMPQACSGLLI 139
Query: 211 TLMFPISDHVGGPPYKV 227
TL + + + GPP+ V
Sbjct: 140 TLEYDQA-LLEGPPFSV 155
>pdb|2H11|A Chain A, Amino-Terminal Truncated Thiopurine S-Methyltransferase
Complexed With S-Adenosyl-L-Homocysteine
pdb|2H11|B Chain B, Amino-Terminal Truncated Thiopurine S-Methyltransferase
Complexed With S-Adenosyl-L-Homocysteine
Length = 232
Score = 38.1 bits (87), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 43/181 (23%), Positives = 71/181 (39%), Gaps = 23/181 (12%)
Query: 78 WEKCWEEGLTPWDIGQPAPIIV-HLHQSGALPKG-RALVPGCGTGYDVVAMASPERYVVG 135
W+ W G T + Q ++ HL G R P CG ++ A VVG
Sbjct: 16 WQDKWVNGKTAFHQEQGHQLLKKHLDTFLKGKSGLRVFFPLCGKAVEMKWFADRGHSVVG 75
Query: 136 LEISDIAIKK---------AEELSSSLPNAKFVSFLKADFFTWCPTEL---------FDL 177
+EIS++ I++ +EE + +P K + +C + FD+
Sbjct: 76 VEISELGIQEFFTEQNLSYSEEPITEIPGTKVFKSSSGNISLYCCSIFDLPRTNIGKFDM 135
Query: 178 IFDYTFFCAIEPEMRAAWAQKIKDFLKPDGE--LITLMFPISDHVGGPPYKVSVSDYEEV 235
I+D AI P R +A + L + L L + + H GPP+ V ++ E +
Sbjct: 136 IWDRGALVAINPGDRKCYADTMFSLLGKKFQYLLCVLSYDPTKH-PGPPFYVPHAEIERL 194
Query: 236 L 236
Sbjct: 195 F 195
>pdb|2BZG|A Chain A, Crystal Structure Of Thiopurine S-Methyltransferase
Length = 232
Score = 35.4 bits (80), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 43/181 (23%), Positives = 68/181 (37%), Gaps = 23/181 (12%)
Query: 78 WEKCWEEGLTPWDIGQPAPIIV-HLHQSGALPKG-RALVPGCGTGYDVVAMASPERYVVG 135
W+ W G T + Q ++ HL G R P CG + A VVG
Sbjct: 16 WQDKWVNGKTAFHQEQGHQLLKKHLDTFLKGKSGLRVFFPLCGKAVEXKWFADRGHSVVG 75
Query: 136 LEISDIAIKK---------AEELSSSLPNAKFVSFLKADFFTWCPTEL---------FDL 177
+EIS++ I++ +EE + +P K + +C + FD
Sbjct: 76 VEISELGIQEFFTEQNLSYSEEPITEIPGTKVFKSSSGNISLYCCSIFDLPRTNIGKFDX 135
Query: 178 IFDYTFFCAIEPEMRAAWAQKIKDFLKPDGE--LITLMFPISDHVGGPPYKVSVSDYEEV 235
I+D AI P R +A L + L L + + H GPP+ V ++ E +
Sbjct: 136 IWDRGALVAINPGDRKCYADTXFSLLGKKFQYLLCVLSYDPTKHP-GPPFYVPHAEIERL 194
Query: 236 L 236
Sbjct: 195 F 195
>pdb|2P35|A Chain A, Crystal Structure Of Trans-Aconitate Methyltransferase
From Agrobacterium Tumefaciens
pdb|2P35|B Chain B, Crystal Structure Of Trans-Aconitate Methyltransferase
From Agrobacterium Tumefaciens
Length = 259
Score = 35.0 bits (79), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 47/98 (47%), Gaps = 14/98 (14%)
Query: 116 GCGTGYDVVAMASPERY----VVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP 171
GCG G + +RY + G++ D ++KA + LPN +F KAD TW P
Sbjct: 41 GCGPGNSTELLT--DRYGVNVITGIDSDDDXLEKA---ADRLPN---TNFGKADLATWKP 92
Query: 172 TELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGEL 209
+ DL++ F + P+ A +Q + D L+ G L
Sbjct: 93 AQKADLLYANAVFQWV-PDHLAVLSQ-LXDQLESGGVL 128
>pdb|3BGD|A Chain A, Thiopurine S-Methyltransferase
pdb|3BGD|B Chain B, Thiopurine S-Methyltransferase
pdb|3BGI|A Chain A, Thiopurine S-Methyltransferase
pdb|3BGI|B Chain B, Thiopurine S-Methyltransferase
Length = 260
Score = 33.9 bits (76), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 34/137 (24%), Positives = 53/137 (38%), Gaps = 21/137 (15%)
Query: 111 RALVPGCGTGYDVVAMASPERYVVGLEISDIAIKK---------AEELSSSLPNAKFVSF 161
R P CG ++ A VVG+EIS+I I++ EE + + AK
Sbjct: 79 RVFFPLCGKAIEMKWFADRGHTVVGVEISEIGIREFFAEQNLSYTEEPLAEIAGAKVFKS 138
Query: 162 LKADFFTWCPTEL---------FDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELI-- 210
+C + FD I+D AI P +A I L+ + + +
Sbjct: 139 SSGSISLYCCSIFDLPRANIGKFDRIWDRGALVAINPGDHDRYADIILSLLRKEFQYLVA 198
Query: 211 TLMFPISDHVGGPPYKV 227
L + + H GPP+ V
Sbjct: 199 VLSYDPTKH-AGPPFYV 214
>pdb|1WZN|A Chain A, Crystal Structure Of The Sam-Dependent Methyltransferase
From Pyrococcus Horikoshii Ot3
pdb|1WZN|B Chain B, Crystal Structure Of The Sam-Dependent Methyltransferase
From Pyrococcus Horikoshii Ot3
pdb|1WZN|C Chain C, Crystal Structure Of The Sam-Dependent Methyltransferase
From Pyrococcus Horikoshii Ot3
Length = 252
Score = 33.9 bits (76), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 53/183 (28%), Positives = 79/183 (43%), Gaps = 44/183 (24%)
Query: 111 RALVPGCGTGYDVVAMASPERYVVGLEISD----IAIKKAEELSSSLPNAKFVSFLKADF 166
R L CGTG + +A VVGL++ + +A +KA+E N K + FL+ D
Sbjct: 44 RVLDLACGTGIPTLELAERGYEVVGLDLHEEMLRVARRKAKE-----RNLK-IEFLQGDV 97
Query: 167 FTWCPTELFDLIFDYTFFCAI----EPEMRAAWAQKIKDFLKPDGELITLMFPISDHVG- 221
FD + FF I E ++R ++ K+ + LKP G IT FP + G
Sbjct: 98 LEIAFKNEFDAV--TMFFSTIMYFDEEDLRKLFS-KVAEALKPGGVFIT-DFPCWFYGGR 153
Query: 222 -GP--------PYKVSVSDYEEV---------------LQPMGFQAISIVDNKLAI-GPR 256
GP K+ + D+ EV L+P G +VD++L I PR
Sbjct: 154 DGPVVWNEQKGEEKLVIMDWREVEPAVQKLRFKRLVQILRPNGEVKAFLVDDELNIYTPR 213
Query: 257 KGR 259
+ R
Sbjct: 214 EVR 216
>pdb|2GB4|A Chain A, Crystal Structure Of Thiopurine Methyltransferase
(18204406) From Mus Musculus At 1.35 A Resolution
pdb|2GB4|B Chain B, Crystal Structure Of Thiopurine Methyltransferase
(18204406) From Mus Musculus At 1.35 A Resolution
Length = 252
Score = 33.5 bits (75), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 34/137 (24%), Positives = 53/137 (38%), Gaps = 21/137 (15%)
Query: 111 RALVPGCGTGYDVVAMASPERYVVGLEISDIAIKK---------AEELSSSLPNAKFVSF 161
R P CG ++ A VVG+EIS+I I++ EE + + AK
Sbjct: 71 RVFFPLCGKAIEMKWFADRGHTVVGVEISEIGIREFFAEQNLSYTEEPLAEIAGAKVFKS 130
Query: 162 LKADFFTWCPTEL---------FDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELI-- 210
+C + FD I+D AI P +A I L+ + + +
Sbjct: 131 SSGSISLYCCSIFDLPRANIGKFDRIWDRGALVAINPGDHDRYADIILSLLRKEFQYLVA 190
Query: 211 TLMFPISDHVGGPPYKV 227
L + + H GPP+ V
Sbjct: 191 VLSYDPTKH-AGPPFYV 206
>pdb|1VE3|A Chain A, Crystal Structure Of Ph0226 Protein From Pyrococcus
Horikoshii Ot3
pdb|1VE3|B Chain B, Crystal Structure Of Ph0226 Protein From Pyrococcus
Horikoshii Ot3
Length = 227
Score = 33.1 bits (74), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 45/106 (42%), Gaps = 9/106 (8%)
Query: 109 KGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT 168
+G+ L CG G + VVG++IS+ I+KA E + S + V F+ D
Sbjct: 39 RGKVLDLACGVGGFSFLLEDYGFEVVGVDISEDXIRKAREYAKSRESN--VEFIVGD--- 93
Query: 169 WCPTELFDLIFDYTFF----CAIEPEMRAAWAQKIKDFLKPDGELI 210
D FDY F EP ++++ LKP G+ I
Sbjct: 94 ARKLSFEDKTFDYVIFIDSIVHFEPLELNQVFKEVRRVLKPSGKFI 139
>pdb|3OU2|A Chain A, Dhpi-Sah Complex Structure
pdb|3OU6|A Chain A, Dhpi-Sam Complex
pdb|3OU6|B Chain B, Dhpi-Sam Complex
pdb|3OU6|C Chain C, Dhpi-Sam Complex
pdb|3OU6|D Chain D, Dhpi-Sam Complex
pdb|3OU7|A Chain A, Dhpi-Sam-Hep Complex
pdb|3OU7|B Chain B, Dhpi-Sam-Hep Complex
pdb|3OU7|C Chain C, Dhpi-Sam-Hep Complex
pdb|3OU7|D Chain D, Dhpi-Sam-Hep Complex
Length = 218
Score = 32.7 bits (73), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 30/125 (24%), Positives = 52/125 (41%), Gaps = 8/125 (6%)
Query: 95 APIIVHLHQSGALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLP 154
AP + ++G + +G L GTGY ++ V L+ S I AE L
Sbjct: 34 APAALERLRAGNI-RGDVLELASGTGYWTRHLSGLADRVTALDGSAEMI--AEAGRHGLD 90
Query: 155 NAKFVSFLKADFFTWCPTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMF 214
N V F + D F W P +D +F + + + A+ + ++ + P G +
Sbjct: 91 N---VEFRQQDLFDWTPDRQWDAVFFAHWLAHVPDDRFEAFWESVRSAVAPGG--VVEFV 145
Query: 215 PISDH 219
++DH
Sbjct: 146 DVTDH 150
>pdb|3MER|A Chain A, Crystal Structure Of The Methyltransferase Slr1183 From
Synechocystis Sp. Pcc 6803, Northeast Structural
Genomics Consortium Target Sgr145
pdb|3MER|B Chain B, Crystal Structure Of The Methyltransferase Slr1183 From
Synechocystis Sp. Pcc 6803, Northeast Structural
Genomics Consortium Target Sgr145
pdb|2KW5|A Chain A, Solution Nmr Structure Of The Slr1183 Protein From
Synechocystis Sp. Pcc 6803, Northeast Structural
Genomics Consortium Target Sgr145
Length = 202
Score = 32.7 bits (73), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 31/127 (24%), Positives = 52/127 (40%), Gaps = 20/127 (15%)
Query: 107 LPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADF 166
+P+G+ L G G + +AS V ++ S + + KA++L+ K
Sbjct: 28 IPQGKILCLAEGEGRNACFLASLGYEVTAVDQSSVGLAKAKQLAQE----------KGVK 77
Query: 167 FTWCPTEL--FDLIFD-----YTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFP---I 216
T + L FD++ D + FC + +R K+ LKP G I F +
Sbjct: 78 ITTVQSNLADFDIVADAWEGIVSIFCHLPSSLRQQLYPKVYQGLKPGGVFILEGFAPEQL 137
Query: 217 SDHVGGP 223
+ GGP
Sbjct: 138 QYNTGGP 144
>pdb|2PBF|A Chain A, Crystal Structure Of A Putative Protein-L-Isoaspartate O-
Methyltransferase Beta-Aspartate Methyltransferase
(Pcmt) From Plasmodium Falciparum In Complex With
S-Adenosyl-L-Homocysteine
pdb|2PBF|B Chain B, Crystal Structure Of A Putative Protein-L-Isoaspartate O-
Methyltransferase Beta-Aspartate Methyltransferase
(Pcmt) From Plasmodium Falciparum In Complex With
S-Adenosyl-L-Homocysteine
Length = 227
Score = 30.8 bits (68), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 34/138 (24%), Positives = 52/138 (37%), Gaps = 29/138 (21%)
Query: 108 PKGRALVPGCGTGYDVVAMA-------SPERYVVGLE-ISDIAIKKAEELSSSLPNAKFV 159
P RA+ G G+GY V MA + YV+GLE + D+ E + P
Sbjct: 80 PGSRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLENIKRDKP----- 134
Query: 160 SFLKADFFTWCPTELFDL---------IFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELI 210
LK D F ++ + +FD A E+ D L +G+LI
Sbjct: 135 ELLKIDNFKIIHKNIYQVNEEEKKELGLFDAIHVGASASELPEILV----DLLAENGKLI 190
Query: 211 TLMFPISDHVGGPPYKVS 228
PI + Y+++
Sbjct: 191 ---IPIEEDYTQVLYEIT 205
>pdb|1P91|A Chain A, Crystal Structure Of Rlma(I) Enzyme: 23s Rrna N1-G745
Methyltransferase (Northeast Structural Genomics
Consortium Target Er19)
pdb|1P91|B Chain B, Crystal Structure Of Rlma(I) Enzyme: 23s Rrna N1-G745
Methyltransferase (Northeast Structural Genomics
Consortium Target Er19)
Length = 269
Score = 30.8 bits (68), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Query: 116 GCGTGYDVVAMAS--PERYVVGLEISDIAIKKA 146
GCG GY A A PE GL++S +AIK A
Sbjct: 93 GCGEGYYTHAFADALPEITTFGLDVSKVAIKAA 125
>pdb|3SM3|A Chain A, Crystal Structure Of Sam-Dependent Methyltransferases
Q8puk2_metma From Methanosarcina Mazei. Northeast
Structural Genomics Consortium Target Mar262
Length = 235
Score = 30.8 bits (68), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 49/106 (46%), Gaps = 8/106 (7%)
Query: 116 GCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTEL- 174
GCG+G + +AS V G++I+ AI+ AE + S P + KA+F + L
Sbjct: 38 GCGSGKISLELASKGYSVTGIDINSEAIRLAETAARS-PGLNQKTGGKAEFKVENASSLS 96
Query: 175 -----FDLIFDYTFFCAI-EPEMRAAWAQKIKDFLKPDGELITLMF 214
FD F ++ +P+ R+ +++ LKP L + F
Sbjct: 97 FHDSSFDFAVMQAFLTSVPDPKERSRIIKEVFRVLKPGAYLYLVEF 142
>pdb|3T6B|A Chain A, Structure Of Human Dppiii In Complex With The Opioid
Peptide Tynorphin, At 2.4 Angstroms
pdb|3T6B|B Chain B, Structure Of Human Dppiii In Complex With The Opioid
Peptide Tynorphin, At 2.4 Angstroms
pdb|3T6J|A Chain A, Structure Of Human Dppiii In Complex With The Opioid
Peptide Tynorphin, At 3.0 Angstroms
Length = 726
Score = 30.0 bits (66), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 33/62 (53%), Gaps = 6/62 (9%)
Query: 202 FLKPD-GELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAISIVDNKLAIGPRKGRE 260
FL PD L L F S G P +++ +Y+++ Q GF+ +S+ N LA+ RE
Sbjct: 368 FLTPDFTSLDVLTFAGS----GIPAGINIPNYDDLRQTEGFKNVSL-GNVLAVAYATQRE 422
Query: 261 KL 262
KL
Sbjct: 423 KL 424
>pdb|3FVY|A Chain A, Crystal Structure Of Human Dipeptidyl Peptidase Iii
Length = 728
Score = 30.0 bits (66), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 33/62 (53%), Gaps = 6/62 (9%)
Query: 202 FLKPD-GELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAISIVDNKLAIGPRKGRE 260
FL PD L L F S G P +++ +Y+++ Q GF+ +S+ N LA+ RE
Sbjct: 370 FLTPDFTSLDVLTFAGS----GIPAGINIPNYDDLRQTEGFKNVSL-GNVLAVAYATQRE 424
Query: 261 KL 262
KL
Sbjct: 425 KL 426
>pdb|2P8J|A Chain A, Crystal Structure Of S-Adenosylmethionine-Dependent
Methyltransferase (Np_349143.1) From Clostridium
Acetobutylicum At 2.00 A Resolution
pdb|2P8J|B Chain B, Crystal Structure Of S-Adenosylmethionine-Dependent
Methyltransferase (Np_349143.1) From Clostridium
Acetobutylicum At 2.00 A Resolution
Length = 209
Score = 27.7 bits (60), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 24/40 (60%), Gaps = 3/40 (7%)
Query: 114 VPGCGTGYDV--VAMASPERY-VVGLEISDIAIKKAEELS 150
V CG G D+ +++ + Y G+EISD+ +KKAE S
Sbjct: 27 VLDCGAGGDLPPLSIFVEDGYKTYGIEISDLQLKKAENFS 66
>pdb|3I9F|A Chain A, Crystal Structure Of A Putative Type 11 Methyltransferase
From Sulfolobus Solfataricus
pdb|3I9F|B Chain B, Crystal Structure Of A Putative Type 11 Methyltransferase
From Sulfolobus Solfataricus
Length = 170
Score = 27.3 bits (59), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 29/125 (23%), Positives = 53/125 (42%), Gaps = 14/125 (11%)
Query: 109 KGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT 168
KG + GCG G+ + + ++I+ IA+K+ +E KF S +
Sbjct: 18 KGVIVDYGCGNGFYCKYLLEFATKLYCIDINVIALKEVKE--------KFDSVITLS--- 66
Query: 169 WCPTELFDLIFDYTFFCAIEPEM--RAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYK 226
P E+ D D+ F +M + ++K LK DG +I + + + GPP
Sbjct: 67 -DPKEIPDNSVDFILFANSFHDMDDKQHVISEVKRILKDDGRVIIIDWRKENTGIGPPLS 125
Query: 227 VSVSD 231
+ + +
Sbjct: 126 IRMDE 130
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.137 0.422
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,493,341
Number of Sequences: 62578
Number of extensions: 371539
Number of successful extensions: 1037
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 1030
Number of HSP's gapped (non-prelim): 23
length of query: 274
length of database: 14,973,337
effective HSP length: 97
effective length of query: 177
effective length of database: 8,903,271
effective search space: 1575878967
effective search space used: 1575878967
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)