Query 024008
Match_columns 274
No_of_seqs 176 out of 3117
Neff 9.6
Searched_HMMs 46136
Date Fri Mar 29 08:15:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024008.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024008hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR03840 TMPT_Se_Te thiopurin 99.9 3.6E-23 7.9E-28 167.9 19.7 175 77-252 2-191 (213)
2 PRK13255 thiopurine S-methyltr 99.9 1.9E-22 4E-27 164.3 19.7 178 75-253 3-195 (218)
3 PRK13256 thiopurine S-methyltr 99.9 1.2E-22 2.6E-27 164.7 18.3 176 73-249 7-198 (226)
4 PF05724 TPMT: Thiopurine S-me 99.9 9.4E-23 2E-27 165.7 13.8 174 75-250 3-192 (218)
5 PRK11207 tellurite resistance 99.9 1.8E-21 4E-26 156.8 17.4 153 92-249 16-171 (197)
6 PLN02244 tocopherol O-methyltr 99.9 1.3E-20 2.8E-25 164.0 20.9 191 60-253 55-283 (340)
7 PRK11036 putative S-adenosyl-L 99.9 2.1E-20 4.5E-25 156.9 15.2 149 98-248 34-207 (255)
8 PF01209 Ubie_methyltran: ubiE 99.8 9.8E-21 2.1E-25 155.6 11.3 142 106-250 45-222 (233)
9 PF03848 TehB: Tellurite resis 99.8 9.4E-20 2E-24 143.9 15.9 166 76-254 7-175 (192)
10 PTZ00098 phosphoethanolamine N 99.8 1.7E-19 3.7E-24 151.6 17.5 172 73-250 19-204 (263)
11 KOG2361 Predicted methyltransf 99.8 1.2E-20 2.5E-25 150.1 9.3 203 70-274 31-264 (264)
12 COG2226 UbiE Methylase involve 99.8 5.8E-20 1.3E-24 149.7 13.4 138 108-248 51-224 (238)
13 TIGR00477 tehB tellurite resis 99.8 2.7E-19 5.9E-24 143.9 17.1 153 95-253 19-174 (195)
14 COG2230 Cfa Cyclopropane fatty 99.8 1.7E-19 3.7E-24 149.5 13.7 184 65-251 29-226 (283)
15 PLN02396 hexaprenyldihydroxybe 99.8 1.9E-19 4.1E-24 154.3 14.5 141 108-250 131-291 (322)
16 PF12847 Methyltransf_18: Meth 99.8 2.6E-19 5.6E-24 131.2 12.1 106 108-213 1-111 (112)
17 PLN02233 ubiquinone biosynthes 99.8 7.2E-19 1.6E-23 147.6 16.4 142 107-250 72-250 (261)
18 PF02353 CMAS: Mycolic acid cy 99.8 5.9E-19 1.3E-23 148.3 14.5 163 98-267 51-231 (273)
19 PRK12335 tellurite resistance 99.8 2E-18 4.2E-23 147.2 16.7 150 95-250 109-261 (287)
20 PRK15451 tRNA cmo(5)U34 methyl 99.8 1.7E-18 3.7E-23 144.5 15.1 108 106-214 54-165 (247)
21 TIGR00452 methyltransferase, p 99.8 4.8E-18 1E-22 145.1 16.2 152 100-253 112-278 (314)
22 smart00828 PKS_MT Methyltransf 99.8 3.3E-18 7.1E-23 140.9 14.6 142 110-253 1-149 (224)
23 PRK15068 tRNA mo(5)U34 methylt 99.8 5.3E-18 1.2E-22 146.2 15.7 145 106-252 120-278 (322)
24 TIGR00740 methyltransferase, p 99.8 1E-17 2.3E-22 139.2 16.3 138 107-245 52-224 (239)
25 TIGR02752 MenG_heptapren 2-hep 99.8 1.3E-17 2.7E-22 138.1 16.6 150 99-251 35-221 (231)
26 COG2227 UbiG 2-polyprenyl-3-me 99.8 2.6E-18 5.5E-23 137.8 10.4 138 107-248 58-215 (243)
27 PRK14103 trans-aconitate 2-met 99.8 1.6E-17 3.5E-22 139.4 15.6 157 99-267 19-201 (255)
28 TIGR02021 BchM-ChlM magnesium 99.8 3.6E-17 7.7E-22 134.2 15.7 145 108-254 55-212 (219)
29 PLN02336 phosphoethanolamine N 99.8 3E-17 6.6E-22 149.6 16.8 168 76-250 236-416 (475)
30 PF13489 Methyltransf_23: Meth 99.8 1.7E-17 3.7E-22 129.3 12.5 135 97-245 12-160 (161)
31 PLN02585 magnesium protoporphy 99.7 2.1E-16 4.6E-21 135.2 18.8 186 62-250 89-301 (315)
32 PRK07580 Mg-protoporphyrin IX 99.7 1.8E-16 3.8E-21 131.1 16.8 187 64-252 11-218 (230)
33 KOG1540 Ubiquinone biosynthesi 99.7 1.2E-16 2.6E-21 128.3 14.8 137 107-245 99-278 (296)
34 PRK00107 gidB 16S rRNA methylt 99.7 4.1E-17 8.8E-22 129.7 12.0 135 108-262 45-181 (187)
35 KOG1271 Methyltransferases [Ge 99.7 4.9E-17 1.1E-21 124.0 11.7 164 76-250 19-207 (227)
36 PF08241 Methyltransf_11: Meth 99.7 3.9E-17 8.4E-22 115.7 10.6 93 113-211 1-95 (95)
37 TIGR02716 C20_methyl_CrtF C-20 99.7 2.1E-16 4.6E-21 136.1 17.0 136 108-246 149-304 (306)
38 PF05401 NodS: Nodulation prot 99.7 7.8E-17 1.7E-21 125.9 12.0 159 85-248 15-179 (201)
39 PF13847 Methyltransf_31: Meth 99.7 7.6E-17 1.6E-21 124.7 11.7 105 108-215 3-112 (152)
40 TIGR00537 hemK_rel_arch HemK-r 99.7 5.2E-16 1.1E-20 123.3 16.7 135 107-254 18-171 (179)
41 KOG1270 Methyltransferases [Co 99.7 1.5E-17 3.3E-22 134.2 7.8 136 109-248 90-249 (282)
42 PRK01683 trans-aconitate 2-met 99.7 3.7E-16 8E-21 131.4 16.6 159 100-268 22-205 (258)
43 PRK10258 biotin biosynthesis p 99.7 5.7E-16 1.2E-20 129.7 17.2 128 108-243 42-182 (251)
44 TIGR00138 gidB 16S rRNA methyl 99.7 3.2E-16 6.9E-21 124.3 14.1 128 107-252 41-173 (181)
45 PRK11873 arsM arsenite S-adeno 99.7 5E-16 1.1E-20 131.6 15.8 140 107-249 76-231 (272)
46 PF08003 Methyltransf_9: Prote 99.7 4.4E-16 9.5E-21 129.4 14.3 144 106-251 113-270 (315)
47 PLN02490 MPBQ/MSBQ methyltrans 99.7 4.5E-16 9.8E-21 134.0 14.0 137 108-250 113-258 (340)
48 PRK11705 cyclopropane fatty ac 99.7 1.9E-15 4.2E-20 133.2 17.6 149 107-267 166-326 (383)
49 COG4106 Tam Trans-aconitate me 99.7 7.6E-16 1.6E-20 120.8 12.4 164 100-273 21-209 (257)
50 PF13649 Methyltransf_25: Meth 99.7 1.8E-16 3.9E-21 114.0 7.7 94 112-207 1-101 (101)
51 PRK14968 putative methyltransf 99.7 4.6E-15 9.9E-20 118.7 16.2 136 107-252 22-177 (188)
52 TIGR03587 Pse_Me-ase pseudamin 99.7 1.3E-15 2.8E-20 123.1 12.5 101 107-215 42-144 (204)
53 PRK00216 ubiE ubiquinone/menaq 99.7 1.6E-15 3.5E-20 125.9 13.3 141 108-250 51-227 (239)
54 PRK08287 cobalt-precorrin-6Y C 99.7 3.4E-15 7.3E-20 119.5 14.5 127 107-250 30-158 (187)
55 PLN02336 phosphoethanolamine N 99.7 2.7E-15 5.8E-20 136.9 15.3 138 108-248 37-182 (475)
56 TIGR02072 BioC biotin biosynth 99.7 3.6E-15 7.8E-20 123.8 14.8 150 108-266 34-193 (240)
57 PRK08317 hypothetical protein; 99.6 1.3E-14 2.9E-19 120.3 17.6 147 107-257 18-185 (241)
58 COG2264 PrmA Ribosomal protein 99.6 2.5E-15 5.4E-20 125.8 13.0 137 98-249 152-289 (300)
59 PRK14967 putative methyltransf 99.6 1.3E-14 2.9E-19 119.3 17.2 147 97-255 24-191 (223)
60 PLN03075 nicotianamine synthas 99.6 3.4E-15 7.3E-20 125.4 13.6 137 76-213 80-233 (296)
61 COG4123 Predicted O-methyltran 99.6 2.9E-15 6.4E-20 122.2 12.7 135 109-254 45-200 (248)
62 TIGR03534 RF_mod_PrmC protein- 99.6 1.1E-14 2.5E-19 121.8 16.7 140 97-248 76-241 (251)
63 PRK00517 prmA ribosomal protei 99.6 4.9E-15 1.1E-19 123.8 14.3 122 106-249 117-239 (250)
64 PF05175 MTS: Methyltransferas 99.6 5.5E-15 1.2E-19 116.4 13.0 105 108-213 31-140 (170)
65 TIGR00406 prmA ribosomal prote 99.6 9E-15 1.9E-19 124.6 14.8 132 100-248 151-283 (288)
66 PF06325 PrmA: Ribosomal prote 99.6 2.6E-15 5.6E-20 126.9 11.2 133 98-249 151-284 (295)
67 PF08242 Methyltransf_12: Meth 99.6 4.7E-17 1E-21 116.6 0.2 95 113-209 1-99 (99)
68 PRK05134 bifunctional 3-demeth 99.6 9.2E-15 2E-19 121.1 13.9 139 106-248 46-205 (233)
69 TIGR03533 L3_gln_methyl protei 99.6 2E-14 4.4E-19 122.0 15.5 129 108-248 121-274 (284)
70 TIGR01983 UbiG ubiquinone bios 99.6 1.7E-14 3.7E-19 118.7 14.4 139 108-249 45-204 (224)
71 PRK06202 hypothetical protein; 99.6 1E-14 2.2E-19 120.8 13.0 137 107-250 59-224 (232)
72 PRK00121 trmB tRNA (guanine-N( 99.6 5.2E-15 1.1E-19 119.7 11.0 126 108-244 40-177 (202)
73 TIGR01934 MenG_MenH_UbiE ubiqu 99.6 2.3E-14 5E-19 117.7 14.4 139 108-251 39-213 (223)
74 PF05891 Methyltransf_PK: AdoM 99.6 2E-14 4.4E-19 114.3 13.3 139 110-249 57-202 (218)
75 PRK15001 SAM-dependent 23S rib 99.6 3.9E-14 8.4E-19 123.8 15.2 125 89-213 208-340 (378)
76 PRK04266 fibrillarin; Provisio 99.6 5.7E-14 1.2E-18 115.0 14.9 135 106-249 70-211 (226)
77 smart00138 MeTrc Methyltransfe 99.6 5.6E-15 1.2E-19 124.2 8.7 106 108-213 99-242 (264)
78 PRK14966 unknown domain/N5-glu 99.6 2.2E-13 4.7E-18 119.3 18.6 127 108-247 251-404 (423)
79 PF13659 Methyltransf_26: Meth 99.6 1.2E-14 2.7E-19 107.1 9.1 105 109-213 1-115 (117)
80 PRK11805 N5-glutamine S-adenos 99.6 1.2E-13 2.6E-18 118.4 16.4 127 110-248 135-286 (307)
81 PRK05785 hypothetical protein; 99.6 3.1E-14 6.7E-19 117.0 11.9 88 108-206 51-140 (226)
82 PRK00377 cbiT cobalt-precorrin 99.6 1.1E-13 2.4E-18 111.7 14.9 123 106-243 38-165 (198)
83 TIGR00536 hemK_fam HemK family 99.6 1.7E-13 3.6E-18 116.7 16.7 127 110-247 116-268 (284)
84 TIGR01177 conserved hypothetic 99.6 6.3E-14 1.4E-18 121.8 14.2 128 107-249 181-316 (329)
85 PRK13944 protein-L-isoaspartat 99.6 6E-14 1.3E-18 113.8 12.9 105 101-213 64-173 (205)
86 PRK11088 rrmA 23S rRNA methylt 99.6 1.8E-13 3.9E-18 115.9 16.3 140 108-269 85-237 (272)
87 TIGR03438 probable methyltrans 99.6 1.3E-13 2.9E-18 118.2 15.4 104 108-211 63-175 (301)
88 PRK09328 N5-glutamine S-adenos 99.6 2.7E-13 5.9E-18 115.0 17.2 128 107-246 107-260 (275)
89 PRK01544 bifunctional N5-gluta 99.6 9.9E-14 2.1E-18 126.5 14.7 128 109-247 139-292 (506)
90 TIGR02469 CbiT precorrin-6Y C5 99.5 1.3E-13 2.9E-18 102.5 12.0 100 108-213 19-122 (124)
91 COG2890 HemK Methylase of poly 99.5 5.4E-13 1.2E-17 112.7 16.8 125 111-248 113-263 (280)
92 PHA03411 putative methyltransf 99.5 3.1E-13 6.8E-18 112.0 14.9 138 94-244 51-210 (279)
93 COG2519 GCD14 tRNA(1-methylade 99.5 1.3E-13 2.8E-18 111.7 12.2 126 106-248 92-220 (256)
94 PRK06922 hypothetical protein; 99.5 8.4E-14 1.8E-18 127.3 12.3 106 107-214 417-538 (677)
95 TIGR02081 metW methionine bios 99.5 2.6E-13 5.6E-18 109.2 13.7 135 108-255 13-174 (194)
96 KOG1541 Predicted protein carb 99.5 2.5E-13 5.3E-18 107.1 12.8 127 109-249 51-188 (270)
97 PF07021 MetW: Methionine bios 99.5 2.4E-13 5.3E-18 106.2 12.7 134 107-253 12-172 (193)
98 COG2242 CobL Precorrin-6B meth 99.5 9.4E-13 2E-17 102.3 15.1 125 106-247 32-160 (187)
99 COG2518 Pcm Protein-L-isoaspar 99.5 2.4E-13 5.2E-18 107.8 11.8 100 106-214 70-170 (209)
100 TIGR00091 tRNA (guanine-N(7)-) 99.5 1.5E-13 3.2E-18 110.5 10.6 128 108-246 16-156 (194)
101 PRK13942 protein-L-isoaspartat 99.5 3.3E-13 7.2E-18 109.9 12.5 98 107-213 75-176 (212)
102 PRK09489 rsmC 16S ribosomal RN 99.5 7E-13 1.5E-17 115.1 14.8 102 109-213 197-303 (342)
103 TIGR00080 pimt protein-L-isoas 99.5 4E-13 8.6E-18 109.9 12.2 99 106-213 75-177 (215)
104 PTZ00146 fibrillarin; Provisio 99.5 6.9E-13 1.5E-17 111.1 13.6 132 107-250 131-273 (293)
105 KOG4300 Predicted methyltransf 99.5 2.2E-13 4.7E-18 106.3 9.4 137 110-249 78-233 (252)
106 TIGR03704 PrmC_rel_meth putati 99.5 1.3E-12 2.8E-17 109.1 14.7 126 110-250 88-242 (251)
107 PRK00312 pcm protein-L-isoaspa 99.5 1.1E-12 2.4E-17 107.1 13.6 129 77-214 43-176 (212)
108 COG2813 RsmC 16S RNA G1207 met 99.5 1.3E-12 2.7E-17 109.0 13.8 124 89-214 138-267 (300)
109 COG4976 Predicted methyltransf 99.5 6.4E-14 1.4E-18 110.9 4.9 146 98-251 114-268 (287)
110 PF00891 Methyltransf_2: O-met 99.5 7.1E-13 1.5E-17 110.3 11.2 100 110-219 102-205 (241)
111 PLN02781 Probable caffeoyl-CoA 99.4 2.6E-12 5.6E-17 106.1 11.1 102 107-213 67-178 (234)
112 PRK11783 rlmL 23S rRNA m(2)G24 99.4 3.6E-12 7.8E-17 120.8 13.0 135 108-253 538-685 (702)
113 PRK07402 precorrin-6B methylas 99.4 8E-12 1.7E-16 100.7 13.1 125 107-248 39-170 (196)
114 PRK11188 rrmJ 23S rRNA methylt 99.4 1.2E-11 2.6E-16 100.5 13.9 119 107-248 50-189 (209)
115 COG2263 Predicted RNA methylas 99.4 2.4E-11 5.2E-16 94.2 14.7 131 106-255 43-175 (198)
116 PF08704 GCD14: tRNA methyltra 99.4 3.4E-12 7.3E-17 105.2 10.5 126 106-248 38-171 (247)
117 PF01135 PCMT: Protein-L-isoas 99.4 2.1E-12 4.6E-17 104.3 9.0 106 100-214 63-173 (209)
118 PRK15128 23S rRNA m(5)C1962 me 99.4 7.4E-12 1.6E-16 110.7 13.0 132 108-248 220-369 (396)
119 PRK14121 tRNA (guanine-N(7)-)- 99.4 8.4E-12 1.8E-16 108.8 12.9 105 108-213 122-235 (390)
120 PLN02232 ubiquinone biosynthes 99.4 4E-12 8.7E-17 99.0 9.1 115 134-250 1-149 (160)
121 PLN02672 methionine S-methyltr 99.4 1.6E-11 3.4E-16 119.1 14.7 131 109-250 119-305 (1082)
122 PHA03412 putative methyltransf 99.3 2.1E-11 4.5E-16 98.9 13.1 129 108-243 49-197 (241)
123 PF06080 DUF938: Protein of un 99.3 2E-11 4.3E-16 96.9 12.6 138 111-248 28-192 (204)
124 cd02440 AdoMet_MTases S-adenos 99.3 2.3E-11 5E-16 86.6 11.8 100 111-212 1-103 (107)
125 PLN02476 O-methyltransferase 99.3 2.6E-11 5.6E-16 101.5 13.3 102 106-212 116-227 (278)
126 PF03291 Pox_MCEL: mRNA cappin 99.3 1.1E-11 2.3E-16 107.0 11.2 144 108-251 62-270 (331)
127 PRK13168 rumA 23S rRNA m(5)U19 99.3 2.2E-11 4.8E-16 110.0 13.8 140 107-265 296-440 (443)
128 PF12147 Methyltransf_20: Puta 99.3 3.7E-11 7.9E-16 99.2 13.5 140 108-247 135-297 (311)
129 PRK04457 spermidine synthase; 99.3 1E-11 2.2E-16 104.2 10.5 107 108-215 66-179 (262)
130 COG4122 Predicted O-methyltran 99.3 1.7E-11 3.7E-16 98.7 11.0 112 95-213 48-166 (219)
131 PF01596 Methyltransf_3: O-met 99.3 6.2E-12 1.3E-16 101.3 7.6 102 107-213 44-155 (205)
132 PRK03522 rumB 23S rRNA methylu 99.3 5.7E-11 1.2E-15 102.7 13.9 140 107-266 172-313 (315)
133 PRK14904 16S rRNA methyltransf 99.3 6.8E-11 1.5E-15 106.8 14.9 132 106-245 248-403 (445)
134 KOG1975 mRNA cap methyltransfe 99.3 3.1E-11 6.6E-16 100.5 11.3 150 101-250 110-319 (389)
135 PRK00811 spermidine synthase; 99.3 4.4E-11 9.4E-16 101.6 12.2 106 108-213 76-191 (283)
136 KOG3191 Predicted N6-DNA-methy 99.3 8.1E-11 1.8E-15 90.3 12.1 131 109-251 44-196 (209)
137 PRK10901 16S rRNA methyltransf 99.3 1.6E-10 3.5E-15 103.8 16.1 131 106-245 242-398 (427)
138 PRK13943 protein-L-isoaspartat 99.3 6E-11 1.3E-15 102.0 12.1 105 100-213 71-180 (322)
139 smart00650 rADc Ribosomal RNA 99.3 6.8E-11 1.5E-15 93.0 11.3 99 107-211 12-111 (169)
140 PF01739 CheR: CheR methyltran 99.3 1.5E-11 3.3E-16 98.2 7.4 106 108-213 31-175 (196)
141 TIGR02085 meth_trns_rumB 23S r 99.2 9.4E-11 2E-15 103.5 12.6 138 107-265 232-372 (374)
142 COG2521 Predicted archaeal met 99.2 4.4E-11 9.5E-16 95.3 9.3 140 108-250 134-279 (287)
143 PRK10909 rsmD 16S rRNA m(2)G96 99.2 1.8E-10 3.9E-15 92.5 12.7 105 107-215 52-161 (199)
144 TIGR00438 rrmJ cell division p 99.2 1.3E-10 2.9E-15 93.0 12.0 117 107-246 31-168 (188)
145 PRK14903 16S rRNA methyltransf 99.2 2.4E-10 5.3E-15 102.5 14.8 133 106-246 235-393 (431)
146 PRK14902 16S rRNA methyltransf 99.2 3E-10 6.4E-15 102.8 15.4 133 107-247 249-407 (444)
147 PRK01581 speE spermidine synth 99.2 2.8E-10 6.1E-15 98.1 14.1 139 107-253 149-302 (374)
148 PLN02589 caffeoyl-CoA O-methyl 99.2 7.7E-11 1.7E-15 97.5 10.2 100 107-211 78-188 (247)
149 TIGR00563 rsmB ribosomal RNA s 99.2 4.2E-10 9E-15 101.2 15.4 130 106-242 236-391 (426)
150 PRK03612 spermidine synthase; 99.2 1.3E-10 2.8E-15 106.8 12.1 133 107-245 296-441 (521)
151 PRK14901 16S rRNA methyltransf 99.2 3.7E-10 8E-15 101.8 14.6 131 106-244 250-409 (434)
152 TIGR00479 rumA 23S rRNA (uraci 99.2 2.5E-10 5.4E-15 103.0 13.3 126 108-250 292-422 (431)
153 KOG1499 Protein arginine N-met 99.2 6.1E-11 1.3E-15 100.3 8.6 104 106-210 58-164 (346)
154 PRK11727 23S rRNA mA1618 methy 99.2 3.9E-10 8.5E-15 96.6 12.3 140 109-248 115-292 (321)
155 KOG3178 Hydroxyindole-O-methyl 99.2 4.1E-10 8.8E-15 95.5 12.1 136 110-252 179-334 (342)
156 PRK10611 chemotaxis methyltran 99.2 1.4E-10 2.9E-15 98.0 8.7 105 109-213 116-262 (287)
157 TIGR00446 nop2p NOL1/NOP2/sun 99.2 8.1E-10 1.8E-14 93.1 13.2 110 106-216 69-202 (264)
158 PLN02366 spermidine synthase 99.2 6.5E-10 1.4E-14 95.1 12.8 107 107-213 90-206 (308)
159 PF02390 Methyltransf_4: Putat 99.1 4.4E-10 9.5E-15 90.1 10.9 125 110-245 19-157 (195)
160 COG1041 Predicted DNA modifica 99.1 1E-09 2.2E-14 93.5 13.3 142 93-250 180-332 (347)
161 TIGR00417 speE spermidine synt 99.1 5.5E-10 1.2E-14 94.4 11.6 106 108-213 72-186 (270)
162 KOG3010 Methyltransferase [Gen 99.1 1.9E-10 4.2E-15 92.2 8.1 103 110-215 35-139 (261)
163 PF05219 DREV: DREV methyltran 99.1 9E-10 1.9E-14 90.0 12.0 150 95-255 75-247 (265)
164 KOG2899 Predicted methyltransf 99.1 7.2E-10 1.6E-14 88.9 11.0 154 95-250 46-257 (288)
165 PF10294 Methyltransf_16: Puta 99.1 4.5E-10 9.8E-15 88.5 9.7 105 106-213 43-156 (173)
166 KOG1500 Protein arginine N-met 99.1 9.2E-10 2E-14 92.2 11.8 105 106-212 175-281 (517)
167 PF05185 PRMT5: PRMT5 arginine 99.1 3.2E-10 6.9E-15 101.7 9.6 102 109-210 187-294 (448)
168 PF01170 UPF0020: Putative RNA 99.1 2.8E-09 6E-14 84.5 13.1 127 107-248 27-171 (179)
169 TIGR00095 RNA methyltransferas 99.1 2E-09 4.3E-14 86.0 12.3 104 107-213 48-159 (189)
170 PF05148 Methyltransf_8: Hypot 99.1 7.4E-10 1.6E-14 87.6 9.6 141 78-248 44-185 (219)
171 COG1092 Predicted SAM-dependen 99.1 2.2E-09 4.8E-14 94.0 12.7 135 108-247 217-365 (393)
172 COG1352 CheR Methylase of chem 99.1 1.9E-09 4.1E-14 89.9 11.2 105 109-213 97-241 (268)
173 KOG2904 Predicted methyltransf 99.1 1.9E-09 4.1E-14 88.0 10.8 106 108-213 148-285 (328)
174 COG3963 Phospholipid N-methylt 99.0 7.9E-09 1.7E-13 78.4 12.8 105 107-217 47-160 (194)
175 PF10672 Methyltrans_SAM: S-ad 99.0 2E-09 4.4E-14 90.6 10.4 139 107-254 122-272 (286)
176 PRK05031 tRNA (uracil-5-)-meth 99.0 4.4E-09 9.5E-14 92.5 12.6 136 109-266 207-360 (362)
177 PF07942 N2227: N2227-like pro 99.0 2.3E-08 5E-13 83.3 15.8 136 109-248 57-242 (270)
178 PF03602 Cons_hypoth95: Conser 99.0 1.9E-09 4.1E-14 85.5 7.3 108 107-216 41-156 (183)
179 KOG2940 Predicted methyltransf 99.0 5.5E-10 1.2E-14 88.9 3.9 141 109-254 73-233 (325)
180 PF01234 NNMT_PNMT_TEMT: NNMT/ 99.0 7.8E-09 1.7E-13 85.6 10.8 146 102-247 50-238 (256)
181 KOG3045 Predicted RNA methylas 99.0 6.9E-09 1.5E-13 84.1 10.1 139 79-249 153-292 (325)
182 PTZ00338 dimethyladenosine tra 98.9 8.5E-09 1.8E-13 87.8 11.1 89 98-187 25-114 (294)
183 PF09445 Methyltransf_15: RNA 98.9 1E-09 2.2E-14 84.6 4.9 75 111-185 2-80 (163)
184 PF04816 DUF633: Family of unk 98.9 2E-08 4.4E-13 80.9 12.4 121 112-248 1-124 (205)
185 PF02475 Met_10: Met-10+ like- 98.9 5.2E-09 1.1E-13 83.8 8.7 99 106-210 99-199 (200)
186 PRK04148 hypothetical protein; 98.9 1.9E-08 4.1E-13 74.7 10.9 94 108-216 16-112 (134)
187 TIGR02143 trmA_only tRNA (urac 98.9 1.5E-08 3.2E-13 88.9 12.1 137 109-267 198-352 (353)
188 KOG1663 O-methyltransferase [S 98.9 5E-08 1.1E-12 78.1 13.7 110 97-213 64-183 (237)
189 PF02527 GidB: rRNA small subu 98.9 1.6E-08 3.5E-13 80.0 10.6 128 110-252 50-179 (184)
190 COG0220 Predicted S-adenosylme 98.9 1.7E-08 3.7E-13 82.4 10.6 102 110-213 50-164 (227)
191 TIGR00478 tly hemolysin TlyA f 98.9 4E-08 8.6E-13 80.4 12.7 137 98-252 63-221 (228)
192 PRK14896 ksgA 16S ribosomal RN 98.9 1.7E-08 3.6E-13 84.8 10.6 85 98-186 18-103 (258)
193 PRK00274 ksgA 16S ribosomal RN 98.9 4.6E-08 1E-12 82.8 13.3 85 97-185 30-116 (272)
194 KOG1661 Protein-L-isoaspartate 98.9 1.4E-08 3.1E-13 79.9 8.7 111 95-213 69-193 (237)
195 TIGR00755 ksgA dimethyladenosi 98.8 6E-08 1.3E-12 81.3 12.7 87 95-185 15-105 (253)
196 PLN02823 spermine synthase 98.8 3.7E-08 8.1E-13 85.2 11.5 105 108-213 103-220 (336)
197 COG2265 TrmA SAM-dependent met 98.8 9.2E-08 2E-12 85.4 13.9 126 108-250 293-422 (432)
198 COG2520 Predicted methyltransf 98.8 6.9E-08 1.5E-12 82.9 12.5 132 107-248 187-320 (341)
199 KOG2915 tRNA(1-methyladenosine 98.8 8.7E-08 1.9E-12 78.4 11.5 129 106-250 103-237 (314)
200 PF09243 Rsm22: Mitochondrial 98.8 7.5E-08 1.6E-12 81.5 11.0 136 107-250 32-170 (274)
201 COG0742 N6-adenine-specific me 98.8 1.9E-07 4.1E-12 73.3 12.0 120 95-214 27-155 (187)
202 TIGR03439 methyl_EasF probable 98.8 4.8E-07 1E-11 77.7 15.6 104 108-212 76-196 (319)
203 PF11968 DUF3321: Putative met 98.8 1.7E-07 3.6E-12 74.8 11.6 119 110-248 53-181 (219)
204 COG0357 GidB Predicted S-adeno 98.7 1.4E-07 3E-12 76.1 9.7 132 109-255 68-202 (215)
205 PF01564 Spermine_synth: Sperm 98.7 2.1E-07 4.6E-12 77.4 11.0 129 107-241 75-213 (246)
206 KOG0820 Ribosomal RNA adenine 98.7 1.8E-07 3.9E-12 76.6 10.1 89 98-187 47-136 (315)
207 KOG3420 Predicted RNA methylas 98.7 3.8E-08 8.3E-13 72.9 5.2 79 106-186 46-126 (185)
208 COG0030 KsgA Dimethyladenosine 98.7 3.9E-07 8.4E-12 75.4 11.6 86 98-186 19-107 (259)
209 PRK04338 N(2),N(2)-dimethylgua 98.7 8.9E-08 1.9E-12 84.5 8.2 98 109-213 58-158 (382)
210 KOG2730 Methylase [General fun 98.6 4.9E-08 1.1E-12 77.4 5.5 99 108-208 94-197 (263)
211 COG0421 SpeE Spermidine syntha 98.6 2E-07 4.3E-12 78.6 9.3 103 110-213 78-190 (282)
212 PRK00536 speE spermidine synth 98.6 3.9E-07 8.5E-12 75.9 10.8 98 107-213 71-171 (262)
213 PF03141 Methyltransf_29: Puta 98.6 4.4E-08 9.5E-13 86.9 5.2 145 110-264 119-269 (506)
214 PF05958 tRNA_U5-meth_tr: tRNA 98.6 9.8E-07 2.1E-11 77.4 13.3 144 102-267 190-351 (352)
215 COG1189 Predicted rRNA methyla 98.6 6.2E-07 1.3E-11 72.4 10.3 149 106-267 77-241 (245)
216 PRK01544 bifunctional N5-gluta 98.6 4.6E-07 1E-11 83.1 10.7 104 109-213 348-462 (506)
217 PF04672 Methyltransf_19: S-ad 98.6 7.7E-07 1.7E-11 73.7 11.0 132 110-244 70-232 (267)
218 KOG1269 SAM-dependent methyltr 98.6 8.3E-08 1.8E-12 83.6 5.1 141 106-248 108-267 (364)
219 COG0116 Predicted N6-adenine-s 98.5 1.2E-06 2.6E-11 76.0 11.4 107 107-213 190-344 (381)
220 COG4262 Predicted spermidine s 98.5 1.5E-06 3.3E-11 74.0 11.1 137 110-255 291-443 (508)
221 PRK11783 rlmL 23S rRNA m(2)G24 98.5 1.7E-06 3.6E-11 82.6 12.7 106 108-213 190-347 (702)
222 PRK11933 yebU rRNA (cytosine-C 98.5 3.3E-06 7.2E-11 76.4 13.9 110 106-216 111-245 (470)
223 PF13679 Methyltransf_32: Meth 98.5 1.1E-06 2.3E-11 66.9 8.6 84 107-190 24-115 (141)
224 PF02384 N6_Mtase: N-6 DNA Met 98.4 1.5E-06 3.4E-11 75.0 10.0 137 107-249 45-213 (311)
225 COG3897 Predicted methyltransf 98.4 1.7E-06 3.6E-11 67.7 8.7 120 75-211 54-176 (218)
226 PF03059 NAS: Nicotianamine sy 98.4 8.5E-07 1.8E-11 74.3 7.5 104 109-213 121-230 (276)
227 TIGR00308 TRM1 tRNA(guanine-26 98.4 9.8E-07 2.1E-11 77.6 8.3 97 110-213 46-147 (374)
228 KOG2798 Putative trehalase [Ca 98.4 1.4E-05 3E-10 67.0 13.7 145 109-255 151-344 (369)
229 COG2384 Predicted SAM-dependen 98.4 1.5E-05 3.3E-10 63.7 12.8 123 109-247 17-142 (226)
230 COG0144 Sun tRNA and rRNA cyto 98.3 1.8E-05 3.8E-10 69.5 14.3 133 106-246 154-315 (355)
231 KOG1331 Predicted methyltransf 98.3 9.8E-07 2.1E-11 73.0 6.0 114 94-217 32-147 (293)
232 PRK00050 16S rRNA m(4)C1402 me 98.3 2E-06 4.3E-11 73.1 7.8 72 107-181 18-97 (296)
233 COG4076 Predicted RNA methylas 98.3 1.4E-06 2.9E-11 67.7 5.5 101 109-211 33-133 (252)
234 PF08123 DOT1: Histone methyla 98.3 6.9E-06 1.5E-10 66.2 9.8 114 95-211 28-156 (205)
235 TIGR02987 met_A_Alw26 type II 98.3 1.4E-05 3E-10 74.1 13.1 78 109-187 32-125 (524)
236 PF01728 FtsJ: FtsJ-like methy 98.3 3.2E-06 6.9E-11 67.1 7.6 117 109-248 24-163 (181)
237 COG0500 SmtA SAM-dependent met 98.2 2.9E-05 6.2E-10 59.4 12.2 102 112-217 52-159 (257)
238 COG0293 FtsJ 23S rRNA methylas 98.2 3.6E-05 7.8E-10 61.4 12.4 129 97-248 32-183 (205)
239 KOG3201 Uncharacterized conser 98.2 2.5E-06 5.5E-11 64.6 5.1 134 108-252 29-170 (201)
240 PF05971 Methyltransf_10: Prot 98.2 5.9E-06 1.3E-10 69.9 7.8 79 110-188 104-191 (299)
241 KOG2352 Predicted spermine/spe 98.2 2.2E-05 4.7E-10 69.8 11.1 107 107-215 46-163 (482)
242 PF00398 RrnaAD: Ribosomal RNA 98.2 1.5E-05 3.2E-10 67.2 9.5 99 99-205 20-123 (262)
243 PF01269 Fibrillarin: Fibrilla 98.1 3.6E-05 7.8E-10 61.9 10.9 136 107-250 72-214 (229)
244 PRK11760 putative 23S rRNA C24 98.1 1.2E-05 2.6E-10 68.9 8.6 86 107-206 210-296 (357)
245 COG4798 Predicted methyltransf 98.1 1.7E-05 3.7E-10 62.0 8.4 143 106-248 46-205 (238)
246 KOG3987 Uncharacterized conser 98.1 5.6E-07 1.2E-11 70.8 -0.1 149 95-254 95-266 (288)
247 KOG1709 Guanidinoacetate methy 98.1 3.4E-05 7.4E-10 61.3 9.7 115 95-213 88-206 (271)
248 PF01861 DUF43: Protein of unk 98.1 0.00034 7.4E-09 57.1 15.2 152 102-263 38-193 (243)
249 PF07091 FmrO: Ribosomal RNA m 98.1 3.1E-05 6.8E-10 63.4 9.0 147 96-247 90-243 (251)
250 PF13578 Methyltransf_24: Meth 98.0 2.7E-06 5.8E-11 61.3 2.3 97 113-213 1-105 (106)
251 COG1889 NOP1 Fibrillarin-like 98.0 0.00017 3.7E-09 56.9 11.7 135 107-249 75-215 (231)
252 KOG4058 Uncharacterized conser 98.0 6.4E-05 1.4E-09 56.2 8.7 119 93-217 56-176 (199)
253 PF03492 Methyltransf_7: SAM d 97.9 0.00025 5.4E-09 61.8 12.9 163 109-271 17-287 (334)
254 PLN02668 indole-3-acetate carb 97.9 0.00031 6.7E-09 61.8 13.4 164 109-272 64-341 (386)
255 PF06962 rRNA_methylase: Putat 97.9 8.4E-05 1.8E-09 55.7 8.2 112 132-250 1-127 (140)
256 TIGR01444 fkbM_fam methyltrans 97.9 5.3E-05 1.1E-09 57.5 6.7 57 111-168 1-59 (143)
257 PF01189 Nol1_Nop2_Fmu: NOL1/N 97.8 0.00016 3.5E-09 61.5 10.0 133 106-246 83-246 (283)
258 KOG2187 tRNA uracil-5-methyltr 97.7 0.00011 2.4E-09 65.7 7.8 105 108-216 383-493 (534)
259 KOG3115 Methyltransferase-like 97.7 0.00036 7.8E-09 55.1 8.6 103 110-213 62-183 (249)
260 PRK10742 putative methyltransf 97.6 0.00029 6.4E-09 58.0 7.4 77 111-187 91-177 (250)
261 COG0275 Predicted S-adenosylme 97.6 0.0013 2.9E-08 55.3 11.2 73 106-180 21-102 (314)
262 KOG1501 Arginine N-methyltrans 97.5 0.00017 3.7E-09 63.2 5.8 71 110-180 68-141 (636)
263 TIGR00027 mthyl_TIGR00027 meth 97.5 0.007 1.5E-07 50.9 14.8 136 110-246 83-248 (260)
264 TIGR00006 S-adenosyl-methyltra 97.4 0.00099 2.1E-08 56.9 8.9 73 107-181 19-99 (305)
265 COG5459 Predicted rRNA methyla 97.4 0.00039 8.4E-09 59.4 5.7 110 106-216 111-228 (484)
266 PF02005 TRM: N2,N2-dimethylgu 97.3 0.00057 1.2E-08 60.4 6.7 100 109-214 50-155 (377)
267 cd00315 Cyt_C5_DNA_methylase C 97.3 0.0031 6.7E-08 53.5 10.9 132 111-253 2-148 (275)
268 COG4627 Uncharacterized protei 97.3 0.00021 4.5E-09 53.9 3.2 80 169-248 42-138 (185)
269 KOG4589 Cell division protein 97.3 0.0034 7.5E-08 49.1 9.5 119 107-248 68-208 (232)
270 PF04989 CmcI: Cephalosporin h 97.3 0.0016 3.5E-08 52.2 7.9 139 98-243 24-185 (206)
271 PF11599 AviRa: RRNA methyltra 97.2 0.0069 1.5E-07 48.5 10.9 118 96-213 38-214 (246)
272 PHA01634 hypothetical protein 97.2 0.0032 6.9E-08 46.0 8.2 48 106-153 26-74 (156)
273 PRK01747 mnmC bifunctional tRN 97.1 0.0037 8E-08 59.8 10.3 124 109-246 58-225 (662)
274 COG3129 Predicted SAM-dependen 97.1 0.0023 5E-08 51.7 7.3 79 109-187 79-166 (292)
275 PRK11524 putative methyltransf 97.1 0.0015 3.3E-08 55.6 6.8 61 92-152 192-252 (284)
276 PF03141 Methyltransf_29: Puta 97.1 0.0013 2.8E-08 59.0 6.2 121 110-251 367-494 (506)
277 KOG0822 Protein kinase inhibit 97.0 0.0016 3.5E-08 58.6 6.5 103 110-214 369-479 (649)
278 COG0286 HsdM Type I restrictio 97.0 0.013 2.8E-07 53.9 12.5 126 108-238 186-346 (489)
279 COG1568 Predicted methyltransf 97.0 0.0058 1.3E-07 50.7 9.0 142 104-258 148-298 (354)
280 PF01555 N6_N4_Mtase: DNA meth 96.9 0.0017 3.6E-08 53.1 5.4 58 91-148 174-231 (231)
281 PRK13699 putative methylase; P 96.9 0.0037 8E-08 51.4 6.8 62 92-153 147-208 (227)
282 KOG1122 tRNA and rRNA cytosine 96.9 0.023 5.1E-07 50.0 11.9 137 106-253 239-402 (460)
283 KOG2793 Putative N2,N2-dimethy 96.8 0.0086 1.9E-07 49.5 8.5 101 109-212 87-198 (248)
284 COG0270 Dcm Site-specific DNA 96.8 0.0073 1.6E-07 52.6 8.5 123 109-242 3-141 (328)
285 KOG1562 Spermidine synthase [A 96.7 0.0073 1.6E-07 50.7 7.4 106 108-213 121-236 (337)
286 PF04445 SAM_MT: Putative SAM- 96.7 0.0051 1.1E-07 50.4 6.5 77 110-186 77-163 (234)
287 PF01795 Methyltransf_5: MraW 96.7 0.0081 1.8E-07 51.4 7.7 80 97-180 11-99 (310)
288 PF02254 TrkA_N: TrkA-N domain 96.5 0.06 1.3E-06 39.0 10.6 101 117-244 4-113 (116)
289 COG3510 CmcI Cephalosporin hyd 96.5 0.062 1.3E-06 42.4 10.5 133 98-240 61-211 (237)
290 COG1064 AdhP Zn-dependent alco 96.4 0.019 4.2E-07 49.7 8.6 94 106-216 164-262 (339)
291 COG4301 Uncharacterized conser 96.4 0.11 2.3E-06 42.8 12.1 105 109-213 79-193 (321)
292 KOG1596 Fibrillarin and relate 96.2 0.052 1.1E-06 44.4 9.4 107 106-219 154-267 (317)
293 PRK13699 putative methylase; P 96.2 0.027 5.8E-07 46.4 8.0 82 159-251 2-99 (227)
294 COG1867 TRM1 N2,N2-dimethylgua 96.2 0.014 3.1E-07 50.6 6.3 99 109-214 53-155 (380)
295 PF02636 Methyltransf_28: Puta 96.1 0.034 7.4E-07 46.5 8.4 44 109-152 19-72 (252)
296 KOG1253 tRNA methyltransferase 96.0 0.0044 9.6E-08 55.4 2.4 104 107-216 108-219 (525)
297 PF07757 AdoMet_MTase: Predict 96.0 0.0061 1.3E-07 43.2 2.6 47 95-141 43-91 (112)
298 TIGR00675 dcm DNA-methyltransf 95.9 0.044 9.6E-07 47.5 8.2 131 112-253 1-145 (315)
299 KOG1227 Putative methyltransfe 95.9 0.016 3.4E-07 48.8 5.0 72 109-180 195-268 (351)
300 KOG1099 SAM-dependent methyltr 95.9 0.017 3.8E-07 46.7 5.1 93 110-214 43-164 (294)
301 PF05430 Methyltransf_30: S-ad 95.7 0.0097 2.1E-07 44.0 3.0 77 158-248 32-111 (124)
302 PF00145 DNA_methylase: C-5 cy 95.7 0.052 1.1E-06 47.0 7.8 130 111-254 2-148 (335)
303 COG1565 Uncharacterized conser 95.6 0.045 9.8E-07 47.5 7.0 56 98-153 66-132 (370)
304 PF10354 DUF2431: Domain of un 95.5 0.18 3.9E-06 39.4 9.4 82 162-251 58-155 (166)
305 PF03269 DUF268: Caenorhabditi 95.4 0.043 9.2E-07 42.0 5.5 131 109-249 2-146 (177)
306 KOG2912 Predicted DNA methylas 95.4 0.052 1.1E-06 46.1 6.3 90 95-184 86-188 (419)
307 PRK09424 pntA NAD(P) transhydr 95.3 0.14 3E-06 47.2 9.6 98 107-214 163-286 (509)
308 PTZ00357 methyltransferase; Pr 95.3 0.07 1.5E-06 50.1 7.3 96 111-208 703-830 (1072)
309 PF10237 N6-adenineMlase: Prob 95.2 0.55 1.2E-05 36.4 11.2 106 95-213 12-123 (162)
310 PF05711 TylF: Macrocin-O-meth 95.1 0.1 2.3E-06 43.3 7.4 123 108-243 74-233 (248)
311 KOG2671 Putative RNA methylase 95.1 0.044 9.5E-07 47.1 5.0 109 106-214 206-355 (421)
312 KOG2920 Predicted methyltransf 95.0 0.011 2.4E-07 49.4 1.3 106 106-213 114-234 (282)
313 PF11899 DUF3419: Protein of u 95.0 0.058 1.3E-06 47.8 5.8 61 157-217 275-338 (380)
314 KOG2198 tRNA cytosine-5-methyl 94.9 0.49 1.1E-05 41.3 11.0 135 106-248 153-326 (375)
315 PF06859 Bin3: Bicoid-interact 94.9 0.018 3.9E-07 41.1 1.9 75 174-248 1-92 (110)
316 COG1255 Uncharacterized protei 94.7 0.22 4.7E-06 35.9 7.0 81 109-206 14-97 (129)
317 COG3315 O-Methyltransferase in 94.7 0.55 1.2E-05 40.3 10.9 136 109-247 93-263 (297)
318 COG2933 Predicted SAM-dependen 94.3 0.13 2.9E-06 42.6 6.0 86 107-206 210-296 (358)
319 PRK10458 DNA cytosine methylas 94.3 0.65 1.4E-05 42.4 11.0 128 110-244 89-255 (467)
320 KOG2078 tRNA modification enzy 94.2 0.055 1.2E-06 47.8 3.9 64 105-168 246-310 (495)
321 PRK11524 putative methyltransf 94.1 0.24 5.3E-06 42.2 7.7 80 158-249 8-104 (284)
322 cd08283 FDH_like_1 Glutathione 94.1 0.095 2.1E-06 46.7 5.4 103 107-213 183-306 (386)
323 PF11312 DUF3115: Protein of u 94.1 0.13 2.9E-06 43.8 5.8 108 110-217 88-246 (315)
324 COG1063 Tdh Threonine dehydrog 94.0 0.18 4E-06 44.3 6.7 97 108-216 168-272 (350)
325 PF07279 DUF1442: Protein of u 93.8 1.4 3.1E-05 35.6 10.7 84 95-180 30-121 (218)
326 PF00107 ADH_zinc_N: Zinc-bind 93.3 0.014 3.1E-07 43.1 -1.1 84 118-216 1-92 (130)
327 PRK09880 L-idonate 5-dehydroge 93.3 0.37 8E-06 42.1 7.6 96 107-214 168-267 (343)
328 cd08254 hydroxyacyl_CoA_DH 6-h 93.3 0.24 5.1E-06 42.9 6.2 96 107-214 164-264 (338)
329 KOG2918 Carboxymethyl transfer 93.2 4.7 0.0001 34.6 13.3 153 97-250 77-279 (335)
330 PRK03659 glutathione-regulated 93.2 1.1 2.4E-05 42.5 10.9 90 110-214 401-499 (601)
331 KOG2539 Mitochondrial/chloropl 93.0 0.19 4.1E-06 45.1 5.1 108 108-217 200-319 (491)
332 cd05188 MDR Medium chain reduc 92.9 0.44 9.5E-06 39.5 7.1 96 107-214 133-233 (271)
333 cd08230 glucose_DH Glucose deh 91.8 0.57 1.2E-05 41.1 6.8 96 107-215 171-271 (355)
334 PF03686 UPF0146: Uncharacteri 91.7 0.48 1E-05 34.9 5.0 89 109-216 14-105 (127)
335 KOG2651 rRNA adenine N-6-methy 91.7 0.51 1.1E-05 41.3 6.0 40 110-149 155-195 (476)
336 PRK09496 trkA potassium transp 91.6 2.4 5.3E-05 38.5 10.9 65 108-180 230-303 (453)
337 PRK10669 putative cation:proto 91.3 1 2.2E-05 42.4 8.1 107 110-245 418-533 (558)
338 PRK03562 glutathione-regulated 90.7 2.7 5.9E-05 40.1 10.5 92 109-213 400-498 (621)
339 TIGR00497 hsdM type I restrict 90.7 2.6 5.6E-05 39.1 10.1 107 108-214 217-356 (501)
340 COG0863 DNA modification methy 90.3 1 2.3E-05 38.4 6.9 62 92-153 206-267 (302)
341 KOG0024 Sorbitol dehydrogenase 89.9 1.3 2.8E-05 38.1 6.7 132 107-251 168-326 (354)
342 TIGR03451 mycoS_dep_FDH mycoth 89.9 0.44 9.5E-06 41.9 4.2 96 107-214 175-277 (358)
343 PF04072 LCM: Leucine carboxyl 89.2 3.1 6.7E-05 32.9 8.3 89 110-199 80-182 (183)
344 PLN03154 putative allyl alcoho 89.2 2.3 5E-05 37.3 8.3 95 107-213 157-258 (348)
345 KOG3924 Putative protein methy 88.8 1.2 2.7E-05 39.2 5.9 114 97-213 180-308 (419)
346 COG0604 Qor NADPH:quinone redu 88.6 2.1 4.5E-05 37.3 7.4 97 107-216 141-244 (326)
347 cd08281 liver_ADH_like1 Zinc-d 88.4 0.75 1.6E-05 40.7 4.7 96 107-214 190-291 (371)
348 KOG1201 Hydroxysteroid 17-beta 88.4 7.2 0.00016 33.3 10.1 59 107-168 36-97 (300)
349 TIGR02822 adh_fam_2 zinc-bindi 88.4 4.9 0.00011 34.9 9.7 90 107-214 164-255 (329)
350 TIGR02825 B4_12hDH leukotriene 88.0 2.1 4.5E-05 36.9 7.1 94 107-213 137-237 (325)
351 PF05050 Methyltransf_21: Meth 87.9 1.4 3.1E-05 33.6 5.4 36 114-149 1-42 (167)
352 cd08239 THR_DH_like L-threonin 87.6 1.5 3.2E-05 38.1 6.0 96 107-214 162-263 (339)
353 PRK05786 fabG 3-ketoacyl-(acyl 87.5 11 0.00023 30.6 10.8 103 108-214 4-136 (238)
354 cd08261 Zn_ADH7 Alcohol dehydr 87.5 0.98 2.1E-05 39.1 4.8 95 107-213 158-258 (337)
355 cd00401 AdoHcyase S-adenosyl-L 87.4 3 6.6E-05 37.5 7.8 97 98-214 189-290 (413)
356 cd08232 idonate-5-DH L-idonate 87.1 4.3 9.3E-05 35.1 8.6 95 107-213 164-262 (339)
357 KOG2352 Predicted spermine/spe 86.9 1.7 3.8E-05 39.4 5.9 106 109-215 296-418 (482)
358 TIGR01202 bchC 2-desacetyl-2-h 86.8 1.9 4.2E-05 37.0 6.2 86 108-214 144-232 (308)
359 TIGR03366 HpnZ_proposed putati 86.7 1.2 2.7E-05 37.6 4.8 96 107-214 119-219 (280)
360 PRK05867 short chain dehydroge 86.6 16 0.00034 30.1 11.4 75 107-183 7-95 (253)
361 PRK09496 trkA potassium transp 86.2 18 0.00039 32.8 12.5 89 111-213 2-99 (453)
362 cd05278 FDH_like Formaldehyde 86.1 2.1 4.7E-05 37.1 6.2 94 108-213 167-267 (347)
363 PF07109 Mg-por_mtran_C: Magne 85.8 5.9 0.00013 27.8 6.9 70 182-253 3-87 (97)
364 cd08293 PTGR2 Prostaglandin re 85.7 2.8 6.1E-05 36.4 6.7 91 110-213 156-254 (345)
365 cd08236 sugar_DH NAD(P)-depend 85.4 1.7 3.7E-05 37.7 5.2 95 107-213 158-258 (343)
366 PRK05872 short chain dehydroge 85.2 16 0.00035 31.0 11.1 75 107-184 7-95 (296)
367 TIGR03201 dearomat_had 6-hydro 85.2 4.4 9.5E-05 35.4 7.7 97 107-215 165-274 (349)
368 PRK08217 fabG 3-ketoacyl-(acyl 85.0 19 0.00042 29.3 12.3 73 108-183 4-91 (253)
369 PRK07533 enoyl-(acyl carrier p 85.0 18 0.00039 30.0 11.0 75 107-184 8-98 (258)
370 cd08294 leukotriene_B4_DH_like 84.6 2.6 5.7E-05 36.2 5.9 94 107-213 142-241 (329)
371 PRK07417 arogenate dehydrogena 84.5 6.6 0.00014 33.3 8.2 84 111-209 2-87 (279)
372 PRK08213 gluconate 5-dehydroge 84.3 3.8 8.1E-05 34.0 6.6 74 107-183 10-98 (259)
373 PRK08324 short chain dehydroge 84.3 13 0.00029 35.8 11.1 73 108-183 421-507 (681)
374 COG0686 Ald Alanine dehydrogen 84.3 3.8 8.2E-05 35.2 6.4 96 108-210 167-265 (371)
375 cd08234 threonine_DH_like L-th 84.0 6.5 0.00014 33.8 8.2 93 107-214 158-258 (334)
376 COG5379 BtaA S-adenosylmethion 84.0 2.5 5.4E-05 35.9 5.1 75 134-214 290-367 (414)
377 TIGR00561 pntA NAD(P) transhyd 83.9 5.6 0.00012 36.9 7.9 95 107-211 162-282 (511)
378 cd08295 double_bond_reductase_ 83.5 7.4 0.00016 33.7 8.4 94 107-213 150-251 (338)
379 PRK12939 short chain dehydroge 83.1 17 0.00037 29.6 10.0 73 108-183 6-93 (250)
380 cd08255 2-desacetyl-2-hydroxye 83.0 11 0.00024 31.4 9.0 92 107-213 96-190 (277)
381 cd05285 sorbitol_DH Sorbitol d 83.0 4.2 9.2E-05 35.3 6.6 95 107-213 161-265 (343)
382 PF14740 DUF4471: Domain of un 82.7 0.81 1.8E-05 38.9 1.9 79 158-245 201-286 (289)
383 cd08285 NADP_ADH NADP(H)-depen 82.5 2.2 4.8E-05 37.2 4.7 95 107-213 165-266 (351)
384 PRK06124 gluconate 5-dehydroge 82.5 26 0.00056 28.8 12.1 60 106-168 8-71 (256)
385 PF03446 NAD_binding_2: NAD bi 82.4 5.4 0.00012 30.8 6.3 111 111-247 3-119 (163)
386 PRK05854 short chain dehydroge 82.4 11 0.00023 32.5 8.8 77 108-184 13-103 (313)
387 KOG1209 1-Acyl dihydroxyaceton 82.1 26 0.00057 28.6 10.7 69 107-182 5-89 (289)
388 PF06016 Reovirus_L2: Reovirus 82.0 6.1 0.00013 40.2 7.7 94 108-208 822-920 (1289)
389 cd05281 TDH Threonine dehydrog 82.0 3.9 8.5E-05 35.5 6.0 95 107-213 162-262 (341)
390 PRK06139 short chain dehydroge 81.9 17 0.00037 31.7 9.9 74 108-183 6-93 (330)
391 TIGR00936 ahcY adenosylhomocys 81.8 14 0.00031 33.2 9.4 104 107-238 193-299 (406)
392 PRK07063 short chain dehydroge 81.8 28 0.0006 28.7 12.4 61 108-168 6-69 (260)
393 cd08245 CAD Cinnamyl alcohol d 81.7 9.8 0.00021 32.7 8.4 94 107-213 161-256 (330)
394 TIGR00872 gnd_rel 6-phosphoglu 81.6 19 0.0004 30.9 9.9 113 111-246 2-117 (298)
395 KOG0821 Predicted ribosomal RN 81.6 2.2 4.7E-05 34.7 3.8 60 107-168 49-109 (326)
396 PRK06701 short chain dehydroge 81.1 28 0.00061 29.5 10.9 105 107-213 44-181 (290)
397 PRK05708 2-dehydropantoate 2-r 81.0 22 0.00048 30.6 10.2 101 110-216 3-107 (305)
398 PRK10309 galactitol-1-phosphat 80.9 2.8 6.1E-05 36.5 4.8 96 107-214 159-261 (347)
399 KOG4174 Uncharacterized conser 80.9 14 0.00031 30.7 8.3 134 110-251 58-220 (282)
400 PRK07806 short chain dehydroge 80.8 28 0.00061 28.3 10.6 103 108-213 5-134 (248)
401 KOG0023 Alcohol dehydrogenase, 80.8 13 0.00029 32.1 8.4 98 107-217 180-283 (360)
402 COG1748 LYS9 Saccharopine dehy 80.7 14 0.0003 33.0 8.9 67 110-183 2-77 (389)
403 PF02153 PDH: Prephenate dehyd 80.3 5.7 0.00012 33.3 6.2 73 123-210 2-76 (258)
404 PF11899 DUF3419: Protein of u 79.8 6.4 0.00014 35.1 6.5 45 106-150 33-77 (380)
405 PRK10537 voltage-gated potassi 79.8 7.6 0.00016 34.8 7.1 105 109-244 240-353 (393)
406 PRK07502 cyclohexadienyl dehyd 79.6 13 0.00029 31.8 8.5 87 110-210 7-97 (307)
407 PRK08594 enoyl-(acyl carrier p 79.4 34 0.00075 28.3 10.8 72 108-183 6-96 (257)
408 PRK07066 3-hydroxybutyryl-CoA 79.2 9 0.0002 33.3 7.2 96 110-211 8-117 (321)
409 cd08237 ribitol-5-phosphate_DH 79.0 11 0.00023 32.9 7.8 92 107-214 162-257 (341)
410 TIGR00518 alaDH alanine dehydr 79.0 4 8.6E-05 36.3 5.0 99 108-213 166-267 (370)
411 PF03514 GRAS: GRAS domain fam 78.9 32 0.00069 30.7 10.7 45 108-152 110-167 (374)
412 PRK05808 3-hydroxybutyryl-CoA 78.9 21 0.00046 30.2 9.4 94 111-211 5-116 (282)
413 cd08278 benzyl_alcohol_DH Benz 78.6 6 0.00013 34.8 6.1 90 108-213 186-285 (365)
414 PRK07984 enoyl-(acyl carrier p 78.4 38 0.00083 28.2 11.6 74 108-184 5-94 (262)
415 PRK07985 oxidoreductase; Provi 78.2 41 0.0009 28.5 11.2 105 107-213 47-185 (294)
416 KOG1208 Dehydrogenases with di 78.0 31 0.00067 29.9 10.1 79 107-185 33-125 (314)
417 PRK12823 benD 1,6-dihydroxycyc 77.8 38 0.00081 27.9 13.3 73 108-183 7-93 (260)
418 PRK07819 3-hydroxybutyryl-CoA 77.8 29 0.00063 29.6 9.8 97 110-213 6-121 (286)
419 cd08233 butanediol_DH_like (2R 77.7 3.8 8.2E-05 35.8 4.6 96 107-214 171-273 (351)
420 PLN02740 Alcohol dehydrogenase 77.7 8.4 0.00018 34.2 6.8 96 107-214 197-301 (381)
421 TIGR00692 tdh L-threonine 3-de 77.7 3.9 8.4E-05 35.5 4.6 96 107-214 160-262 (340)
422 PF13460 NAD_binding_10: NADH( 77.6 26 0.00057 27.0 9.0 120 117-250 5-145 (183)
423 PRK15057 UDP-glucose 6-dehydro 77.3 47 0.001 29.8 11.3 39 111-149 2-41 (388)
424 COG5379 BtaA S-adenosylmethion 76.3 7.8 0.00017 33.0 5.6 45 107-151 62-106 (414)
425 PRK06172 short chain dehydroge 76.3 15 0.00033 30.1 7.6 75 108-184 6-94 (253)
426 PRK08085 gluconate 5-dehydroge 76.0 42 0.00091 27.5 13.1 75 107-183 7-95 (254)
427 KOG1197 Predicted quinone oxid 75.8 14 0.00031 30.9 6.9 95 107-214 145-246 (336)
428 PF02737 3HCDH_N: 3-hydroxyacy 75.7 16 0.00035 28.7 7.2 96 112-214 2-115 (180)
429 PF02086 MethyltransfD12: D12 75.6 7.8 0.00017 32.2 5.8 44 108-151 20-63 (260)
430 COG0677 WecC UDP-N-acetyl-D-ma 75.6 20 0.00043 32.0 8.1 120 110-238 10-144 (436)
431 PRK06125 short chain dehydroge 75.5 38 0.00082 27.9 9.9 75 108-183 6-90 (259)
432 PTZ00142 6-phosphogluconate de 75.4 26 0.00056 32.3 9.4 119 111-245 3-124 (470)
433 TIGR02818 adh_III_F_hyde S-(hy 75.3 4.4 9.5E-05 35.8 4.3 96 107-214 184-288 (368)
434 PRK09291 short chain dehydroge 75.2 19 0.00042 29.5 8.0 71 110-183 3-82 (257)
435 PRK06079 enoyl-(acyl carrier p 75.2 45 0.00098 27.4 11.0 72 108-184 6-93 (252)
436 cd08238 sorbose_phosphate_red 75.2 23 0.00051 31.7 9.0 97 108-212 175-287 (410)
437 PF01210 NAD_Gly3P_dh_N: NAD-d 75.1 14 0.00031 28.2 6.7 95 111-213 1-103 (157)
438 cd08279 Zn_ADH_class_III Class 74.9 5.5 0.00012 35.0 4.9 91 108-213 182-282 (363)
439 PRK12548 shikimate 5-dehydroge 74.3 21 0.00046 30.4 8.1 120 107-243 124-255 (289)
440 PRK07523 gluconate 5-dehydroge 74.3 18 0.00039 29.7 7.6 75 107-184 8-97 (255)
441 PRK09260 3-hydroxybutyryl-CoA 74.3 21 0.00046 30.3 8.1 95 111-211 3-115 (288)
442 CHL00194 ycf39 Ycf39; Provisio 74.3 32 0.00069 29.6 9.3 129 111-248 2-144 (317)
443 PRK07035 short chain dehydroge 73.8 19 0.00042 29.4 7.7 75 107-183 6-94 (252)
444 PF05206 TRM13: Methyltransfer 73.6 12 0.00026 31.4 6.3 134 108-247 18-182 (259)
445 PRK08293 3-hydroxybutyryl-CoA 73.6 24 0.00051 30.0 8.3 96 110-211 4-118 (287)
446 PF01555 N6_N4_Mtase: DNA meth 73.6 7.7 0.00017 31.2 5.1 52 192-252 35-87 (231)
447 PRK11154 fadJ multifunctional 73.5 21 0.00045 34.8 8.7 97 110-213 310-425 (708)
448 PRK07097 gluconate 5-dehydroge 73.5 18 0.0004 29.9 7.5 76 107-184 8-97 (265)
449 PRK07890 short chain dehydroge 73.3 20 0.00043 29.4 7.6 74 108-183 4-91 (258)
450 PTZ00075 Adenosylhomocysteinas 73.3 21 0.00047 32.7 8.1 86 106-213 251-341 (476)
451 PRK07062 short chain dehydroge 73.1 20 0.00044 29.6 7.7 78 107-184 6-97 (265)
452 PRK11064 wecC UDP-N-acetyl-D-m 73.1 17 0.00037 32.8 7.6 114 110-239 4-136 (415)
453 PRK11730 fadB multifunctional 73.0 21 0.00045 34.8 8.6 97 110-213 314-428 (715)
454 PRK05396 tdh L-threonine 3-deh 73.0 12 0.00025 32.5 6.4 96 107-214 162-264 (341)
455 PRK06914 short chain dehydroge 72.6 22 0.00047 29.7 7.8 74 110-183 4-90 (280)
456 PRK07109 short chain dehydroge 72.3 65 0.0014 28.0 12.2 59 108-168 7-68 (334)
457 PRK07677 short chain dehydroge 71.8 21 0.00045 29.3 7.4 71 110-182 2-86 (252)
458 PRK06940 short chain dehydroge 71.8 59 0.0013 27.2 11.0 70 111-184 4-86 (275)
459 PLN02989 cinnamyl-alcohol dehy 71.2 14 0.0003 31.7 6.5 74 109-183 5-86 (325)
460 PRK06505 enoyl-(acyl carrier p 71.2 60 0.0013 27.1 11.4 74 108-184 6-95 (271)
461 cd01842 SGNH_hydrolase_like_5 71.1 35 0.00077 26.9 7.8 81 170-250 46-152 (183)
462 PRK07814 short chain dehydroge 70.8 26 0.00056 29.0 7.8 74 107-183 8-96 (263)
463 PRK05876 short chain dehydroge 70.6 62 0.0014 27.1 12.3 59 108-168 5-66 (275)
464 PRK08339 short chain dehydroge 70.6 25 0.00055 29.2 7.7 76 107-183 6-94 (263)
465 PRK06484 short chain dehydroge 70.6 73 0.0016 29.4 11.4 71 108-183 268-352 (520)
466 PRK09599 6-phosphogluconate de 70.5 46 0.001 28.5 9.4 113 111-245 2-117 (301)
467 cd08241 QOR1 Quinone oxidoredu 70.4 13 0.00028 31.3 6.0 94 107-213 138-238 (323)
468 PRK06849 hypothetical protein; 70.3 12 0.00027 33.2 6.0 36 109-144 4-42 (389)
469 cd08266 Zn_ADH_like1 Alcohol d 70.1 12 0.00026 32.0 5.8 94 107-213 165-265 (342)
470 PRK08862 short chain dehydroge 70.1 25 0.00053 28.7 7.3 73 108-182 4-91 (227)
471 PLN02896 cinnamyl-alcohol dehy 70.1 74 0.0016 27.7 10.9 74 107-184 8-89 (353)
472 PRK06128 oxidoreductase; Provi 70.1 67 0.0015 27.2 11.5 104 107-212 53-190 (300)
473 PRK06949 short chain dehydroge 69.9 26 0.00057 28.7 7.6 74 107-183 7-95 (258)
474 PRK07889 enoyl-(acyl carrier p 69.8 62 0.0013 26.7 10.5 101 108-213 6-145 (256)
475 COG1023 Gnd Predicted 6-phosph 69.7 26 0.00057 29.1 7.0 104 124-248 17-120 (300)
476 PRK00258 aroE shikimate 5-dehy 69.7 45 0.00097 28.2 9.0 115 107-243 121-240 (278)
477 cd08263 Zn_ADH10 Alcohol dehyd 69.7 11 0.00025 33.0 5.6 92 107-213 186-287 (367)
478 COG0569 TrkA K+ transport syst 69.6 61 0.0013 26.5 10.8 64 111-180 2-72 (225)
479 COG4121 Uncharacterized conser 69.4 17 0.00037 30.3 6.1 123 110-246 60-227 (252)
480 PRK12490 6-phosphogluconate de 69.4 49 0.0011 28.3 9.3 112 112-245 3-117 (299)
481 PRK09242 tropinone reductase; 69.3 28 0.00061 28.6 7.7 77 108-184 8-98 (257)
482 PLN02662 cinnamyl-alcohol dehy 69.3 14 0.0003 31.6 6.0 74 109-183 4-85 (322)
483 PRK09186 flagellin modificatio 69.2 29 0.00063 28.4 7.7 75 108-182 3-91 (256)
484 PRK08945 putative oxoacyl-(acy 69.1 34 0.00074 27.9 8.1 75 107-183 10-101 (247)
485 PRK06194 hypothetical protein; 69.0 25 0.00055 29.4 7.5 73 109-184 6-93 (287)
486 PLN02586 probable cinnamyl alc 69.0 19 0.00042 31.6 6.9 92 107-214 182-279 (360)
487 PRK08703 short chain dehydroge 68.9 37 0.00079 27.5 8.2 74 108-183 5-96 (239)
488 PRK07478 short chain dehydroge 68.8 30 0.00064 28.4 7.7 75 108-184 5-93 (254)
489 PRK07454 short chain dehydroge 68.6 30 0.00065 28.1 7.6 73 109-184 6-93 (241)
490 COG0287 TyrA Prephenate dehydr 68.5 14 0.00031 31.3 5.7 88 110-210 4-95 (279)
491 PF11253 DUF3052: Protein of u 68.3 46 0.00099 24.6 7.8 71 172-250 43-113 (127)
492 PRK07024 short chain dehydroge 68.2 28 0.00061 28.7 7.4 71 110-184 3-88 (257)
493 PRK07326 short chain dehydroge 68.2 27 0.00058 28.2 7.2 71 109-183 6-91 (237)
494 PRK06113 7-alpha-hydroxysteroi 68.0 30 0.00065 28.4 7.6 75 107-183 9-97 (255)
495 PRK05866 short chain dehydroge 67.9 28 0.0006 29.6 7.5 74 108-183 39-126 (293)
496 COG2130 Putative NADP-dependen 67.6 37 0.00081 29.3 7.8 84 118-213 162-249 (340)
497 PF03807 F420_oxidored: NADP o 67.2 10 0.00022 26.0 3.9 80 118-212 6-93 (96)
498 cd08291 ETR_like_1 2-enoyl thi 67.2 40 0.00087 28.9 8.5 93 108-213 142-242 (324)
499 PRK06484 short chain dehydroge 67.2 89 0.0019 28.9 11.2 72 108-184 4-89 (520)
500 KOG1098 Putative SAM-dependent 67.0 4.9 0.00011 37.7 2.7 97 108-216 44-161 (780)
No 1
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=99.92 E-value=3.6e-23 Score=167.90 Aligned_cols=175 Identities=22% Similarity=0.412 Sum_probs=143.6
Q ss_pred chhHhhhcCCCCccCCCccHHHHHHHhcCC-CCCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcC--
Q 024008 77 GWEKCWEEGLTPWDIGQPAPIIVHLHQSGA-LPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSL-- 153 (274)
Q Consensus 77 ~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~vLDiG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~-- 153 (274)
+|+++|..+..+|....+.+.+.+++.... .++.+|||+|||.|..+.+|++.|++|+|+|+|+.+++.+.......
T Consensus 2 ~Wd~ry~~~~~~w~~~~p~~~l~~~~~~l~~~~~~rvLd~GCG~G~da~~LA~~G~~V~gvD~S~~Ai~~~~~~~~~~~~ 81 (213)
T TIGR03840 2 FWHERWQEGQIGFHQSEVNPLLVKHWPALGLPAGARVFVPLCGKSLDLAWLAEQGHRVLGVELSEIAVEQFFAENGLTPT 81 (213)
T ss_pred hHHHHHhcCCCCCccCCCCHHHHHHHHhhCCCCCCeEEEeCCCchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHcCCCcc
Confidence 799999999999998999999999887643 35579999999999999999999999999999999999864422110
Q ss_pred ---------CCCcceEEEEcccCCCCC--CCCeeEEEecccccccChhHHHHHHHHHHhcccCCcEEEEEEccCC-CCCC
Q 024008 154 ---------PNAKFVSFLKADFFTWCP--TELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPIS-DHVG 221 (274)
Q Consensus 154 ---------~~~~~v~~~~~d~~~~~~--~~~fD~v~~~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~~~~-~~~~ 221 (274)
....++++.++|+++..+ .++||.|+...++++++++.+..+++.+.++|+|||.+++..+... ....
T Consensus 82 ~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkpgG~~ll~~~~~~~~~~~ 161 (213)
T TIGR03840 82 VTQQGEFTRYRAGNIEIFCGDFFALTAADLGPVDAVYDRAALIALPEEMRQRYAAHLLALLPPGARQLLITLDYDQSEMA 161 (213)
T ss_pred eeccccceeeecCceEEEEccCCCCCcccCCCcCEEEechhhccCCHHHHHHHHHHHHHHcCCCCeEEEEEEEcCCCCCC
Confidence 012469999999998543 3679999999999999999999999999999999998777665432 3345
Q ss_pred CCCcccCHHHHHHHHhcCCCcEEEEeecccc
Q 024008 222 GPPYKVSVSDYEEVLQPMGFQAISIVDNKLA 252 (274)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~Gf~~~~~~~~~~~ 252 (274)
++++.++.+++.+++.. +|.+..+......
T Consensus 162 gpp~~~~~~eL~~~f~~-~~~i~~~~~~~~~ 191 (213)
T TIGR03840 162 GPPFSVSPAEVEALYGG-HYEIELLESRDVL 191 (213)
T ss_pred CcCCCCCHHHHHHHhcC-CceEEEEeecccc
Confidence 77888999999999975 6888888775543
No 2
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=99.91 E-value=1.9e-22 Score=164.33 Aligned_cols=178 Identities=20% Similarity=0.337 Sum_probs=143.8
Q ss_pred ccchhHhhhcCCCCccCCCccHHHHHHHhcC-CCCCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcC
Q 024008 75 SGGWEKCWEEGLTPWDIGQPAPIIVHLHQSG-ALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSL 153 (274)
Q Consensus 75 ~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~vLDiG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~ 153 (274)
..+|+++|..+..+|....+++.+.+++... ..++.+|||+|||.|..+.+|++.|++|+|+|+|+.+++.+.......
T Consensus 3 ~~~Wd~rw~~~~~~~~~~~p~~~L~~~~~~~~~~~~~rvL~~gCG~G~da~~LA~~G~~V~avD~s~~Ai~~~~~~~~l~ 82 (218)
T PRK13255 3 PDFWHEKWAENQIGFHQEEVNPLLQKYWPALALPAGSRVLVPLCGKSLDMLWLAEQGHEVLGVELSELAVEQFFAENGLT 82 (218)
T ss_pred HhHHHHHHcCCCCCCCCCCCCHHHHHHHHhhCCCCCCeEEEeCCCChHhHHHHHhCCCeEEEEccCHHHHHHHHHHcCCC
Confidence 4689999999999998899999999988754 234579999999999999999999999999999999999875322110
Q ss_pred -----------CCCcceEEEEcccCCCCC--CCCeeEEEecccccccChhHHHHHHHHHHhcccCCcEEEE-EEccCCCC
Q 024008 154 -----------PNAKFVSFLKADFFTWCP--TELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELIT-LMFPISDH 219 (274)
Q Consensus 154 -----------~~~~~v~~~~~d~~~~~~--~~~fD~v~~~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~-~~~~~~~~ 219 (274)
....++++.++|++++.+ ...||+|+...++++++++.+..++..+.++|+|||.+++ ........
T Consensus 83 ~~~~~~~~~~~~~~~~v~~~~~D~~~l~~~~~~~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~pgG~~~l~~~~~~~~~ 162 (218)
T PRK13255 83 PQTRQSGEFEHYQAGEITIYCGDFFALTAADLADVDAVYDRAALIALPEEMRERYVQQLAALLPAGCRGLLVTLDYPQEE 162 (218)
T ss_pred ccccccccccccccCceEEEECcccCCCcccCCCeeEEEehHhHhhCCHHHHHHHHHHHHHHcCCCCeEEEEEEEeCCcc
Confidence 013579999999998543 2589999999999999999999999999999999986444 33223345
Q ss_pred CCCCCcccCHHHHHHHHhcCCCcEEEEeeccccc
Q 024008 220 VGGPPYKVSVSDYEEVLQPMGFQAISIVDNKLAI 253 (274)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~Gf~~~~~~~~~~~~ 253 (274)
..++++.++.+++.+++.. +|.+..+.......
T Consensus 163 ~~gPp~~~~~~el~~~~~~-~~~i~~~~~~~~~~ 195 (218)
T PRK13255 163 LAGPPFSVSDEEVEALYAG-CFEIELLERQDVLE 195 (218)
T ss_pred CCCCCCCCCHHHHHHHhcC-CceEEEeeeccccc
Confidence 5778889999999999964 48888888765544
No 3
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=99.91 E-value=1.2e-22 Score=164.73 Aligned_cols=176 Identities=17% Similarity=0.310 Sum_probs=148.8
Q ss_pred ccccchhHhhhcCCCCccCCCccHHHHHHHhcCCC-CCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhh
Q 024008 73 ESSGGWEKCWEEGLTPWDIGQPAPIIVHLHQSGAL-PKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSS 151 (274)
Q Consensus 73 ~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~vLDiG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~ 151 (274)
....+|+++|..+..+|+...+++.+.+++..... ++.+||+.|||.|..+.+|+..|++|+|+|+|+.+++.+.+...
T Consensus 7 ~~~~fW~~rw~~~~~~f~~~~pnp~L~~~~~~l~~~~~~rvLvPgCGkg~D~~~LA~~G~~V~GvDlS~~Ai~~~~~e~~ 86 (226)
T PRK13256 7 NNNQYWLDRWQNDDVGFCQESPNEFLVKHFSKLNINDSSVCLIPMCGCSIDMLFFLSKGVKVIGIELSEKAVLSFFSQNT 86 (226)
T ss_pred CCHHHHHHHHhcCCCCCccCCCCHHHHHHHHhcCCCCCCeEEEeCCCChHHHHHHHhCCCcEEEEecCHHHHHHHHHHcC
Confidence 34578999999999999999999999888877644 45799999999999999999999999999999999999866321
Q ss_pred cC-----------CCCcceEEEEcccCCCCC----CCCeeEEEecccccccChhHHHHHHHHHHhcccCCcEEEEEEccC
Q 024008 152 SL-----------PNAKFVSFLKADFFTWCP----TELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPI 216 (274)
Q Consensus 152 ~~-----------~~~~~v~~~~~d~~~~~~----~~~fD~v~~~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~~~ 216 (274)
.. ....++++.++|++++.+ .++||+|+...+|++++++.+.++++++.++|+|||.+++..+..
T Consensus 87 ~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~~~~~~~~fD~VyDra~~~Alpp~~R~~Y~~~l~~lL~pgg~llll~~~~ 166 (226)
T PRK13256 87 INYEVIHGNDYKLYKGDDIEIYVADIFNLPKIANNLPVFDIWYDRGAYIALPNDLRTNYAKMMLEVCSNNTQILLLVMEH 166 (226)
T ss_pred CCcceecccccceeccCceEEEEccCcCCCccccccCCcCeeeeehhHhcCCHHHHHHHHHHHHHHhCCCcEEEEEEEec
Confidence 00 012469999999998643 358999999999999999999999999999999999998888765
Q ss_pred CCCCCCCCcccCHHHHHHHHhcCCCcEEEEeec
Q 024008 217 SDHVGGPPYKVSVSDYEEVLQPMGFQAISIVDN 249 (274)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~Gf~~~~~~~~ 249 (274)
.....+|||..+.+++.+++.. +|.+..+...
T Consensus 167 ~~~~~GPPf~v~~~e~~~lf~~-~~~i~~l~~~ 198 (226)
T PRK13256 167 DKKSQTPPYSVTQAELIKNFSA-KIKFELIDSK 198 (226)
T ss_pred CCCCCCCCCcCCHHHHHHhccC-CceEEEeeec
Confidence 5556899999999999999976 6777766653
No 4
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=99.90 E-value=9.4e-23 Score=165.68 Aligned_cols=174 Identities=42% Similarity=0.784 Sum_probs=134.9
Q ss_pred ccchhHhhhcCCCCccCCCccHHHHHHHhcCCC-CCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhc-
Q 024008 75 SGGWEKCWEEGLTPWDIGQPAPIIVHLHQSGAL-PKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSS- 152 (274)
Q Consensus 75 ~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~vLDiG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~- 152 (274)
..+|++.|..+..+|+...+.+.+.+++..... ++.+||..|||.|..+.+|++.|.+|+|+|+|+.+++.+.+....
T Consensus 3 ~~~W~~~w~~~~~~w~~~~~~p~L~~~~~~l~~~~~~rvLvPgCG~g~D~~~La~~G~~VvGvDls~~Ai~~~~~e~~~~ 82 (218)
T PF05724_consen 3 PEFWEERWQEGQTPWDQGEPNPALVEYLDSLALKPGGRVLVPGCGKGYDMLWLAEQGHDVVGVDLSPTAIEQAFEENNLE 82 (218)
T ss_dssp HHHHHHHHHTT--TT--TTSTHHHHHHHHHHTTSTSEEEEETTTTTSCHHHHHHHTTEEEEEEES-HHHHHHHHHHCTTE
T ss_pred HHHHHHHHhcCCCCCCCCCCCHHHHHHHHhcCCCCCCeEEEeCCCChHHHHHHHHCCCeEEEEecCHHHHHHHHHHhccC
Confidence 478999999999999999999999999987534 446999999999999999999999999999999999998543221
Q ss_pred ------CC----CCcceEEEEcccCCCCCC--CCeeEEEecccccccChhHHHHHHHHHHhcccCCcE--EEEEEccCCC
Q 024008 153 ------LP----NAKFVSFLKADFFTWCPT--ELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGE--LITLMFPISD 218 (274)
Q Consensus 153 ------~~----~~~~v~~~~~d~~~~~~~--~~fD~v~~~~~~~~~~~~~~~~~l~~l~~~L~~gG~--l~~~~~~~~~ 218 (274)
.. ...+|++.++|+++..+. ++||+|+-..+++.++++.+.++.+++.++|+|||. ++...+.. .
T Consensus 83 ~~~~~~~~~~~~~~~~i~~~~gDfF~l~~~~~g~fD~iyDr~~l~Alpp~~R~~Ya~~l~~ll~p~g~~lLi~l~~~~-~ 161 (218)
T PF05724_consen 83 PTVTSVGGFKRYQAGRITIYCGDFFELPPEDVGKFDLIYDRTFLCALPPEMRERYAQQLASLLKPGGRGLLITLEYPQ-G 161 (218)
T ss_dssp EECTTCTTEEEETTSSEEEEES-TTTGGGSCHHSEEEEEECSSTTTS-GGGHHHHHHHHHHCEEEEEEEEEEEEES-C-S
T ss_pred CCcccccceeeecCCceEEEEcccccCChhhcCCceEEEEecccccCCHHHHHHHHHHHHHHhCCCCcEEEEEEEcCC-c
Confidence 00 124689999999995443 479999999999999999999999999999999999 44444433 3
Q ss_pred CCCCCCcccCHHHHHHHHhcCCCcEEEEeecc
Q 024008 219 HVGGPPYKVSVSDYEEVLQPMGFQAISIVDNK 250 (274)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~Gf~~~~~~~~~ 250 (274)
...||||.++.+++.+++. .+|++..++...
T Consensus 162 ~~~GPPf~v~~~ev~~l~~-~~f~i~~l~~~~ 192 (218)
T PF05724_consen 162 EMEGPPFSVTEEEVRELFG-PGFEIEELEEED 192 (218)
T ss_dssp CSSSSS----HHHHHHHHT-TTEEEEEEEEEE
T ss_pred CCCCcCCCCCHHHHHHHhc-CCcEEEEEeccc
Confidence 3448999999999999999 699999988833
No 5
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=99.88 E-value=1.8e-21 Score=156.82 Aligned_cols=153 Identities=14% Similarity=0.244 Sum_probs=125.6
Q ss_pred CCccHHHHHHHhcCCCCCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCC
Q 024008 92 GQPAPIIVHLHQSGALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP 171 (274)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~ 171 (274)
..+.+.+.+.+. ..++.+|||+|||+|..+..+++.+.+|+|+|+|+.+++.++++....++ .++++...|+.....
T Consensus 16 ~~~~~~l~~~l~--~~~~~~vLDiGcG~G~~a~~La~~g~~V~gvD~S~~~i~~a~~~~~~~~~-~~v~~~~~d~~~~~~ 92 (197)
T PRK11207 16 TRTHSEVLEAVK--VVKPGKTLDLGCGNGRNSLYLAANGFDVTAWDKNPMSIANLERIKAAENL-DNLHTAVVDLNNLTF 92 (197)
T ss_pred CCChHHHHHhcc--cCCCCcEEEECCCCCHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHcCC-CcceEEecChhhCCc
Confidence 455777777776 34568999999999999999999999999999999999999998877765 358899999977544
Q ss_pred CCCeeEEEecccccccChhHHHHHHHHHHhcccCCcEEEE-EEccCCCC--CCCCCcccCHHHHHHHHhcCCCcEEEEee
Q 024008 172 TELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELIT-LMFPISDH--VGGPPYKVSVSDYEEVLQPMGFQAISIVD 248 (274)
Q Consensus 172 ~~~fD~v~~~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~-~~~~~~~~--~~~~~~~~~~~~~~~~~~~~Gf~~~~~~~ 248 (274)
+++||+|+++.++++++++.+..++.++.++|+|||++++ ..+...+. ..++++.++.+++.++++ ||.++...+
T Consensus 93 ~~~fD~I~~~~~~~~~~~~~~~~~l~~i~~~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~el~~~~~--~~~~~~~~~ 170 (197)
T PRK11207 93 DGEYDFILSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLIVAAMDTADYPCTVGFPFAFKEGELRRYYE--GWEMVKYNE 170 (197)
T ss_pred CCCcCEEEEecchhhCCHHHHHHHHHHHHHHcCCCcEEEEEEEecCCCCCCCCCCCCccCHHHHHHHhC--CCeEEEeeC
Confidence 5789999999999998877889999999999999999654 33333221 235677789999999998 899988865
Q ss_pred c
Q 024008 249 N 249 (274)
Q Consensus 249 ~ 249 (274)
.
T Consensus 171 ~ 171 (197)
T PRK11207 171 D 171 (197)
T ss_pred C
Confidence 4
No 6
>PLN02244 tocopherol O-methyltransferase
Probab=99.87 E-value=1.3e-20 Score=163.96 Aligned_cols=191 Identities=23% Similarity=0.310 Sum_probs=142.2
Q ss_pred hhHHHHHHHHhhcccccchhHhhhcCCC--CccCC--------CccHHHHHHHhcCC------CCCCeEEEEcCCcchhH
Q 024008 60 HPRVNKLQQLMHIESSGGWEKCWEEGLT--PWDIG--------QPAPIIVHLHQSGA------LPKGRALVPGCGTGYDV 123 (274)
Q Consensus 60 ~~~~~~~~~~~~~~~~~~w~~~~~~~~~--~~~~~--------~~~~~~~~~~~~~~------~~~~~vLDiG~G~G~~~ 123 (274)
....+.+..+|+ .....|+..|..... .|... .....+..++.... .++.+|||||||+|..+
T Consensus 55 ~~~~~~i~~~Yd-~~~~~~e~~~g~~~h~g~~~~~~~~~~~~~aq~~~~~~~l~~~~~~~~~~~~~~~VLDiGCG~G~~~ 133 (340)
T PLN02244 55 ADLKEGIAEFYD-ESSGVWEDVWGEHMHHGYYDPGASRGDHRQAQIRMIEESLAWAGVPDDDEKRPKRIVDVGCGIGGSS 133 (340)
T ss_pred hhHHHHHHHHHc-cchHHHHHHhCCcceeeccCCCCCcccHHHHHHHHHHHHHHhcCCCcccCCCCCeEEEecCCCCHHH
Confidence 334455666666 556788888765443 12221 01223444554443 34579999999999999
Q ss_pred HHhhCC-CCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC-CCCCCCeeEEEecccccccChhHHHHHHHHHHh
Q 024008 124 VAMASP-ERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT-WCPTELFDLIFDYTFFCAIEPEMRAAWAQKIKD 201 (274)
Q Consensus 124 ~~l~~~-~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~~~~~fD~v~~~~~~~~~~~~~~~~~l~~l~~ 201 (274)
..+++. +.+|+|+|+++.+++.++++....+..++++|+.+|+.+ +.++++||+|++..+++|+++ ...++.++.+
T Consensus 134 ~~La~~~g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~FD~V~s~~~~~h~~d--~~~~l~e~~r 211 (340)
T PLN02244 134 RYLARKYGANVKGITLSPVQAARANALAAAQGLSDKVSFQVADALNQPFEDGQFDLVWSMESGEHMPD--KRKFVQELAR 211 (340)
T ss_pred HHHHHhcCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCcccCCCCCCCccEEEECCchhccCC--HHHHHHHHHH
Confidence 999884 789999999999999999998877776789999999987 456789999999999999853 4688999999
Q ss_pred cccCCcEEEEEEccCCCCCC--------------------CCCcccCHHHHHHHHhcCCCcEEEEeeccccc
Q 024008 202 FLKPDGELITLMFPISDHVG--------------------GPPYKVSVSDYEEVLQPMGFQAISIVDNKLAI 253 (274)
Q Consensus 202 ~L~~gG~l~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~Gf~~~~~~~~~~~~ 253 (274)
+|+|||.+++..+....... ..+...+.+++.++++++||..+.+.++...+
T Consensus 212 vLkpGG~lvi~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~p~~~s~~~~~~~l~~aGf~~v~~~d~s~~v 283 (340)
T PLN02244 212 VAAPGGRIIIVTWCHRDLEPGETSLKPDEQKLLDKICAAYYLPAWCSTSDYVKLAESLGLQDIKTEDWSEHV 283 (340)
T ss_pred HcCCCcEEEEEEecccccccccccCCHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHCCCCeeEeeeCcHHH
Confidence 99999999998764322110 01222478999999999999999998876443
No 7
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.85 E-value=2.1e-20 Score=156.87 Aligned_cols=149 Identities=17% Similarity=0.196 Sum_probs=121.7
Q ss_pred HHHHHhcCCCCCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCC--CCCCCe
Q 024008 98 IVHLHQSGALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW--CPTELF 175 (274)
Q Consensus 98 ~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--~~~~~f 175 (274)
+..++.....++.+|||+|||+|..+..+++.+.+|+++|+++++++.|+++....++.++++++++|+.+. .++++|
T Consensus 34 ~~~~l~~l~~~~~~vLDiGcG~G~~a~~la~~g~~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~~~~~~f 113 (255)
T PRK11036 34 LDRLLAELPPRPLRVLDAGGGEGQTAIKLAELGHQVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQHLETPV 113 (255)
T ss_pred HHHHHHhcCCCCCEEEEeCCCchHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhhhcCCCC
Confidence 445666555556899999999999999999999999999999999999999998887767899999999763 346789
Q ss_pred eEEEecccccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCC-----------------------CCCCCcccCHHHH
Q 024008 176 DLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDH-----------------------VGGPPYKVSVSDY 232 (274)
Q Consensus 176 D~v~~~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~-----------------------~~~~~~~~~~~~~ 232 (274)
|+|++..+++++++ ...++.++.++|+|||++++..+..... ...+.+.++++++
T Consensus 114 D~V~~~~vl~~~~~--~~~~l~~~~~~LkpgG~l~i~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l 191 (255)
T PRK11036 114 DLILFHAVLEWVAD--PKSVLQTLWSVLRPGGALSLMFYNANGLLMHNMVAGNFDYVQAGMPKRKKRTLSPDYPLDPEQV 191 (255)
T ss_pred CEEEehhHHHhhCC--HHHHHHHHHHHcCCCeEEEEEEECccHHHHHHHHccChHHHHhcCccccccCCCCCCCCCHHHH
Confidence 99999999999853 3578999999999999998876543210 1112345789999
Q ss_pred HHHHhcCCCcEEEEee
Q 024008 233 EEVLQPMGFQAISIVD 248 (274)
Q Consensus 233 ~~~~~~~Gf~~~~~~~ 248 (274)
.++++++||+++...-
T Consensus 192 ~~~l~~aGf~~~~~~g 207 (255)
T PRK11036 192 YQWLEEAGWQIMGKTG 207 (255)
T ss_pred HHHHHHCCCeEeeeee
Confidence 9999999999986554
No 8
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=99.84 E-value=9.8e-21 Score=155.65 Aligned_cols=142 Identities=24% Similarity=0.283 Sum_probs=84.2
Q ss_pred CCCCCeEEEEcCCcchhHHHhhC---CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC-CCCCCCeeEEEec
Q 024008 106 ALPKGRALVPGCGTGYDVVAMAS---PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT-WCPTELFDLIFDY 181 (274)
Q Consensus 106 ~~~~~~vLDiG~G~G~~~~~l~~---~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~~~~~fD~v~~~ 181 (274)
..++.+|||+|||||..+..+++ +..+|+|+|+|+.+++.|+++....+.. +++++++|+.+ +.++++||+|++.
T Consensus 45 ~~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~-~i~~v~~da~~lp~~d~sfD~v~~~ 123 (233)
T PF01209_consen 45 LRPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQ-NIEFVQGDAEDLPFPDNSFDAVTCS 123 (233)
T ss_dssp --S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT---SEEEEE-BTTB--S-TT-EEEEEEE
T ss_pred CCCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCC-CeeEEEcCHHHhcCCCCceeEEEHH
Confidence 45678999999999999998877 3469999999999999999999877654 79999999998 6678999999999
Q ss_pred ccccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCC---------------------CCC-----------CCcccCH
Q 024008 182 TFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDH---------------------VGG-----------PPYKVSV 229 (274)
Q Consensus 182 ~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~---------------------~~~-----------~~~~~~~ 229 (274)
..++.++ +....+++++++|||||++++.+++.... ..+ ...+.+.
T Consensus 124 fglrn~~--d~~~~l~E~~RVLkPGG~l~ile~~~p~~~~~~~~~~~y~~~ilP~~g~l~~~~~~~Y~yL~~Si~~f~~~ 201 (233)
T PF01209_consen 124 FGLRNFP--DRERALREMYRVLKPGGRLVILEFSKPRNPLLRALYKFYFKYILPLIGRLLSGDREAYRYLPESIRRFPSP 201 (233)
T ss_dssp S-GGG-S--SHHHHHHHHHHHEEEEEEEEEEEEEB-SSHHHHHHHHH---------------------------------
T ss_pred hhHHhhC--CHHHHHHHHHHHcCCCeEEEEeeccCCCCchhhceeeeeeccccccccccccccccccccccccccccccc
Confidence 9999886 35679999999999999999988876533 000 0112479
Q ss_pred HHHHHHHhcCCCcEEEEeecc
Q 024008 230 SDYEEVLQPMGFQAISIVDNK 250 (274)
Q Consensus 230 ~~~~~~~~~~Gf~~~~~~~~~ 250 (274)
+++.++++++||+.++.....
T Consensus 202 ~~~~~~l~~~Gf~~v~~~~~~ 222 (233)
T PF01209_consen 202 EELKELLEEAGFKNVEYRPLT 222 (233)
T ss_dssp ---------------------
T ss_pred ccccccccccccccccccccc
Confidence 999999999999988776544
No 9
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=99.84 E-value=9.4e-20 Score=143.88 Aligned_cols=166 Identities=20% Similarity=0.275 Sum_probs=120.9
Q ss_pred cchhHhhhcCCCCccCCCccHHHHHHHhcCCCCCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCC
Q 024008 76 GGWEKCWEEGLTPWDIGQPAPIIVHLHQSGALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPN 155 (274)
Q Consensus 76 ~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~ 155 (274)
.+|...|..... +..+.+.++ ..+++++||+|||.|+++.+|++.|+.|+++|.|+.+++.+++.+...++
T Consensus 7 ~y~~kky~~~~~-------hs~v~~a~~--~~~~g~~LDlgcG~GRNalyLA~~G~~VtAvD~s~~al~~l~~~a~~~~l 77 (192)
T PF03848_consen 7 DYFHKKYGLTPT-------HSEVLEAVP--LLKPGKALDLGCGEGRNALYLASQGFDVTAVDISPVALEKLQRLAEEEGL 77 (192)
T ss_dssp THHHHHHTB-----------HHHHHHCT--TS-SSEEEEES-TTSHHHHHHHHTT-EEEEEESSHHHHHHHHHHHHHTT-
T ss_pred HHHHHhhCCCCC-------cHHHHHHHh--hcCCCcEEEcCCCCcHHHHHHHHCCCeEEEEECCHHHHHHHHHHHhhcCc
Confidence 455566654322 344455444 34678999999999999999999999999999999999999998887775
Q ss_pred CcceEEEEcccCCCCCCCCeeEEEecccccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCC---CCCCCcccCHHHH
Q 024008 156 AKFVSFLKADFFTWCPTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDH---VGGPPYKVSVSDY 232 (274)
Q Consensus 156 ~~~v~~~~~d~~~~~~~~~fD~v~~~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~---~~~~~~~~~~~~~ 232 (274)
+ ++....|+.....++.||+|++..++++++++.++.+++.+...++|||++++..+-.... ....++.+.+.++
T Consensus 78 ~--i~~~~~Dl~~~~~~~~yD~I~st~v~~fL~~~~~~~i~~~m~~~~~pGG~~li~~~~~~~d~p~~~~~~f~~~~~EL 155 (192)
T PF03848_consen 78 D--IRTRVADLNDFDFPEEYDFIVSTVVFMFLQRELRPQIIENMKAATKPGGYNLIVTFMETPDYPCPSPFPFLLKPGEL 155 (192)
T ss_dssp T--EEEEE-BGCCBS-TTTEEEEEEESSGGGS-GGGHHHHHHHHHHTEEEEEEEEEEEEB--SSS--SS--S--B-TTHH
T ss_pred e--eEEEEecchhccccCCcCEEEEEEEeccCCHHHHHHHHHHHHhhcCCcEEEEEEEecccCCCCCCCCCCcccCHHHH
Confidence 4 8999999988666688999999999999999999999999999999999988865432222 2234566788999
Q ss_pred HHHHhcCCCcEEEEeecccccC
Q 024008 233 EEVLQPMGFQAISIVDNKLAIG 254 (274)
Q Consensus 233 ~~~~~~~Gf~~~~~~~~~~~~~ 254 (274)
...+. ||+++...+..-...
T Consensus 156 ~~~y~--dW~il~y~E~~g~~h 175 (192)
T PF03848_consen 156 REYYA--DWEILKYNEDVGELH 175 (192)
T ss_dssp HHHTT--TSEEEEEEEEEEEEE
T ss_pred HHHhC--CCeEEEEEcccccee
Confidence 99988 699988777554443
No 10
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=99.84 E-value=1.7e-19 Score=151.64 Aligned_cols=172 Identities=16% Similarity=0.215 Sum_probs=130.7
Q ss_pred ccccchhHhhhcCCCCccCCCccHHHHHHHhcCC-CCCCeEEEEcCCcchhHHHhhC-CCCeEEEEeCChHHHHHHHHHh
Q 024008 73 ESSGGWEKCWEEGLTPWDIGQPAPIIVHLHQSGA-LPKGRALVPGCGTGYDVVAMAS-PERYVVGLEISDIAIKKAEELS 150 (274)
Q Consensus 73 ~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~vLDiG~G~G~~~~~l~~-~~~~v~~iD~s~~~~~~a~~~~ 150 (274)
..-..|+..|+.+... ..-.+....++.... .++.+|||+|||+|..+..++. .+.+|+++|+++.+++.|+++.
T Consensus 19 ~~~~~~e~~~g~~~~~---~gg~~~~~~~l~~l~l~~~~~VLDiGcG~G~~a~~la~~~~~~v~giD~s~~~~~~a~~~~ 95 (263)
T PTZ00098 19 EGIKAYEFIFGEDYIS---SGGIEATTKILSDIELNENSKVLDIGSGLGGGCKYINEKYGAHVHGVDICEKMVNIAKLRN 95 (263)
T ss_pred ccchhHHHHhCCCCCC---CCchHHHHHHHHhCCCCCCCEEEEEcCCCChhhHHHHhhcCCEEEEEECCHHHHHHHHHHc
Confidence 3345677777655432 112333555665553 4557999999999999988876 5779999999999999999987
Q ss_pred hcCCCCcceEEEEcccCC-CCCCCCeeEEEecccccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCC--------
Q 024008 151 SSLPNAKFVSFLKADFFT-WCPTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVG-------- 221 (274)
Q Consensus 151 ~~~~~~~~v~~~~~d~~~-~~~~~~fD~v~~~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~~~-------- 221 (274)
... +++.+..+|+.. ..++++||+|++..+++|++..+...+++++.++|+|||.+++.++.......
T Consensus 96 ~~~---~~i~~~~~D~~~~~~~~~~FD~V~s~~~l~h~~~~d~~~~l~~i~r~LkPGG~lvi~d~~~~~~~~~~~~~~~~ 172 (263)
T PTZ00098 96 SDK---NKIEFEANDILKKDFPENTFDMIYSRDAILHLSYADKKKLFEKCYKWLKPNGILLITDYCADKIENWDEEFKAY 172 (263)
T ss_pred CcC---CceEEEECCcccCCCCCCCeEEEEEhhhHHhCCHHHHHHHHHHHHHHcCCCcEEEEEEeccccccCcHHHHHHH
Confidence 542 579999999987 45678999999999888887667789999999999999999998764432110
Q ss_pred ---CCCcccCHHHHHHHHhcCCCcEEEEeecc
Q 024008 222 ---GPPYKVSVSDYEEVLQPMGFQAISIVDNK 250 (274)
Q Consensus 222 ---~~~~~~~~~~~~~~~~~~Gf~~~~~~~~~ 250 (274)
......+.+++.++++++||+.+...+..
T Consensus 173 ~~~~~~~~~~~~~~~~~l~~aGF~~v~~~d~~ 204 (263)
T PTZ00098 173 IKKRKYTLIPIQEYGDLIKSCNFQNVVAKDIS 204 (263)
T ss_pred HHhcCCCCCCHHHHHHHHHHCCCCeeeEEeCc
Confidence 01123478999999999999999887744
No 11
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=99.84 E-value=1.2e-20 Score=150.13 Aligned_cols=203 Identities=18% Similarity=0.199 Sum_probs=155.5
Q ss_pred hhcccccchhHhhhcCCCCccCCC--ccHHHHHHHhcCCCCCCeEEEEcCCcchhHHHhhC----CCCeEEEEeCChHHH
Q 024008 70 MHIESSGGWEKCWEEGLTPWDIGQ--PAPIIVHLHQSGALPKGRALVPGCGTGYDVVAMAS----PERYVVGLEISDIAI 143 (274)
Q Consensus 70 ~~~~~~~~w~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~----~~~~v~~iD~s~~~~ 143 (274)
+......+|+.+|..+...|.... .....-.++........+|||+|||.|.....+.+ ++..++++|.||.++
T Consensus 31 y~~~~~k~wD~fy~~~~~rFfkdR~wL~~Efpel~~~~~~~~~~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai 110 (264)
T KOG2361|consen 31 YEREASKYWDTFYKIHENRFFKDRNWLLREFPELLPVDEKSAETILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAI 110 (264)
T ss_pred hhcchhhhhhhhhhhccccccchhHHHHHhhHHhhCccccChhhheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHH
Confidence 344666899999998776542111 01122223222222334899999999999998887 347999999999999
Q ss_pred HHHHHHhhcCCCCcceEEEEcccCC-----CCCCCCeeEEEecccccccChhHHHHHHHHHHhcccCCcEEEEEEccCCC
Q 024008 144 KKAEELSSSLPNAKFVSFLKADFFT-----WCPTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISD 218 (274)
Q Consensus 144 ~~a~~~~~~~~~~~~v~~~~~d~~~-----~~~~~~fD~v~~~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~~~~~ 218 (274)
+..+++..... .++.-...|+.. ....+.+|+|++..++..++++....++..+.++|||||.+++.+++..+
T Consensus 111 ~~vk~~~~~~e--~~~~afv~Dlt~~~~~~~~~~~svD~it~IFvLSAi~pek~~~a~~nl~~llKPGG~llfrDYg~~D 188 (264)
T KOG2361|consen 111 ELVKKSSGYDE--SRVEAFVWDLTSPSLKEPPEEGSVDIITLIFVLSAIHPEKMQSVIKNLRTLLKPGGSLLFRDYGRYD 188 (264)
T ss_pred HHHHhccccch--hhhcccceeccchhccCCCCcCccceEEEEEEEeccChHHHHHHHHHHHHHhCCCcEEEEeecccch
Confidence 99999876654 456666666654 34567999999999999999999999999999999999999999988764
Q ss_pred C-------------------CCCCCcccCHHHHHHHHhcCCCcEEEEeecccccC-CccchhHHHHhhhhhcccCC
Q 024008 219 H-------------------VGGPPYKVSVSDYEEVLQPMGFQAISIVDNKLAIG-PRKGREKLGRWKRSVRHSLL 274 (274)
Q Consensus 219 ~-------------------~~~~~~~~~~~~~~~~~~~~Gf~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 274 (274)
. .+...|+++.+++.++|+++||..++.....+-.- ...+..+...|.|..++.|+
T Consensus 189 laqlRF~~~~~i~~nfYVRgDGT~~YfF~~eeL~~~f~~agf~~~~~~~~~rl~vNr~k~lkm~Rvwvq~~f~k~~ 264 (264)
T KOG2361|consen 189 LAQLRFKKGQCISENFYVRGDGTRAYFFTEEELDELFTKAGFEEVQLEVDCRLLVNRKKQLKMYRVWVQAKFQKPL 264 (264)
T ss_pred HHHHhccCCceeecceEEccCCceeeeccHHHHHHHHHhcccchhcccceeeeeeehhccCccceEEEEEEeecCC
Confidence 3 22335889999999999999999999887666444 44467888899999998885
No 12
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=99.83 E-value=5.8e-20 Score=149.69 Aligned_cols=138 Identities=22% Similarity=0.286 Sum_probs=117.8
Q ss_pred CCCeEEEEcCCcchhHHHhhCC--CCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC-CCCCCCeeEEEecccc
Q 024008 108 PKGRALVPGCGTGYDVVAMASP--ERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT-WCPTELFDLIFDYTFF 184 (274)
Q Consensus 108 ~~~~vLDiG~G~G~~~~~l~~~--~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~~~~~fD~v~~~~~~ 184 (274)
++.+|||+|||||..+..+++. ..+|+++|+|+.|++.|+++....+..+ ++|+.+|+.+ ++++++||+|.+...+
T Consensus 51 ~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~~~~~~~-i~fv~~dAe~LPf~D~sFD~vt~~fgl 129 (238)
T COG2226 51 PGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKKGVQN-VEFVVGDAENLPFPDNSFDAVTISFGL 129 (238)
T ss_pred CCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHHHHHHhhccCccc-eEEEEechhhCCCCCCccCEEEeeehh
Confidence 6789999999999999999984 3699999999999999999999887766 9999999999 7889999999999999
Q ss_pred cccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCC----------------------CC-----------CcccCHHH
Q 024008 185 CAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVG----------------------GP-----------PYKVSVSD 231 (274)
Q Consensus 185 ~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~~~----------------------~~-----------~~~~~~~~ 231 (274)
.+++ +.+.+|++++|+|||||++++.+++...... +. ..+.+.++
T Consensus 130 rnv~--d~~~aL~E~~RVlKpgG~~~vle~~~p~~~~~~~~~~~~~~~~v~P~~g~~~~~~~~~y~yL~eSi~~~p~~~~ 207 (238)
T COG2226 130 RNVT--DIDKALKEMYRVLKPGGRLLVLEFSKPDNPVLRKAYILYYFKYVLPLIGKLVAKDAEAYEYLAESIRRFPDQEE 207 (238)
T ss_pred hcCC--CHHHHHHHHHHhhcCCeEEEEEEcCCCCchhhHHHHHHHHHHhHhhhhceeeecChHHHHHHHHHHHhCCCHHH
Confidence 9995 5678999999999999999999887653300 00 11248999
Q ss_pred HHHHHhcCCCcEEEEee
Q 024008 232 YEEVLQPMGFQAISIVD 248 (274)
Q Consensus 232 ~~~~~~~~Gf~~~~~~~ 248 (274)
+.++++++||..+....
T Consensus 208 l~~~~~~~gf~~i~~~~ 224 (238)
T COG2226 208 LKQMIEKAGFEEVRYEN 224 (238)
T ss_pred HHHHHHhcCceEEeeEe
Confidence 99999999999877443
No 13
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=99.83 E-value=2.7e-19 Score=143.93 Aligned_cols=153 Identities=10% Similarity=0.119 Sum_probs=119.6
Q ss_pred cHHHHHHHhcCCCCCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCC
Q 024008 95 APIIVHLHQSGALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTEL 174 (274)
Q Consensus 95 ~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~ 174 (274)
...+...+. ..++.+|||+|||+|..+..+++.+.+|+|+|+++.+++.++++....++ ++.+...|+.....+++
T Consensus 19 ~~~l~~~~~--~~~~~~vLDiGcG~G~~a~~la~~g~~V~~iD~s~~~l~~a~~~~~~~~~--~v~~~~~d~~~~~~~~~ 94 (195)
T TIGR00477 19 HSAVREAVK--TVAPCKTLDLGCGQGRNSLYLSLAGYDVRAWDHNPASIASVLDMKARENL--PLRTDAYDINAAALNED 94 (195)
T ss_pred hHHHHHHhc--cCCCCcEEEeCCCCCHHHHHHHHCCCeEEEEECCHHHHHHHHHHHHHhCC--CceeEeccchhccccCC
Confidence 444445444 34568999999999999999999999999999999999999988876654 37778888765444568
Q ss_pred eeEEEecccccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCC-CC--CCCcccCHHHHHHHHhcCCCcEEEEeeccc
Q 024008 175 FDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDH-VG--GPPYKVSVSDYEEVLQPMGFQAISIVDNKL 251 (274)
Q Consensus 175 fD~v~~~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~~Gf~~~~~~~~~~ 251 (274)
||+|+++.++++++.+....+++.+.++|+|||++++..+..... .. ..++.++.+++.+++. +|+++...+...
T Consensus 95 fD~I~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lli~~~~~~~~~~~~~~~~~~~~~~el~~~f~--~~~~~~~~e~~~ 172 (195)
T TIGR00477 95 YDFIFSTVVFMFLQAGRVPEIIANMQAHTRPGGYNLIVAAMDTADYPCHMPFSFTFKEDELRQYYA--DWELLKYNEAVG 172 (195)
T ss_pred CCEEEEecccccCCHHHHHHHHHHHHHHhCCCcEEEEEEecccCCCCCCCCcCccCCHHHHHHHhC--CCeEEEeecccc
Confidence 999999999999987788899999999999999966654432211 12 2345689999999997 599999886554
Q ss_pred cc
Q 024008 252 AI 253 (274)
Q Consensus 252 ~~ 253 (274)
.+
T Consensus 173 ~~ 174 (195)
T TIGR00477 173 EL 174 (195)
T ss_pred cc
Confidence 33
No 14
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=99.82 E-value=1.7e-19 Score=149.47 Aligned_cols=184 Identities=19% Similarity=0.153 Sum_probs=145.6
Q ss_pred HHHHHhhcccccchhHhhhcCCCCccCCCccHHHHHHHhcC-CCCCCeEEEEcCCcchhHHHhhCC-CCeEEEEeCChHH
Q 024008 65 KLQQLMHIESSGGWEKCWEEGLTPWDIGQPAPIIVHLHQSG-ALPKGRALVPGCGTGYDVVAMASP-ERYVVGLEISDIA 142 (274)
Q Consensus 65 ~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~vLDiG~G~G~~~~~l~~~-~~~v~~iD~s~~~ 142 (274)
.+.+++.+....||.++|......-. .+-...+...++.+ ..++++|||||||+|.+++.+++. +.+|+|+++|+++
T Consensus 29 ~fy~l~Ld~~~~Yscayf~~~~~tL~-eAQ~~k~~~~~~kl~L~~G~~lLDiGCGWG~l~~~aA~~y~v~V~GvTlS~~Q 107 (283)
T COG2230 29 DFYRLFLDPSMTYSCAYFEDPDMTLE-EAQRAKLDLILEKLGLKPGMTLLDIGCGWGGLAIYAAEEYGVTVVGVTLSEEQ 107 (283)
T ss_pred HHHHHhcCCCCceeeEEeCCCCCChH-HHHHHHHHHHHHhcCCCCCCEEEEeCCChhHHHHHHHHHcCCEEEEeeCCHHH
Confidence 66777777888999999987543101 11133444555555 446689999999999999999985 8999999999999
Q ss_pred HHHHHHHhhcCCCCcceEEEEcccCCCCCCCCeeEEEecccccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCC-
Q 024008 143 IKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVG- 221 (274)
Q Consensus 143 ~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~~~- 221 (274)
.+.+++++...|+..+++++..|..... ++||-|++..+|+|+..+..+.++.++.++|+|||++++..........
T Consensus 108 ~~~~~~r~~~~gl~~~v~v~l~d~rd~~--e~fDrIvSvgmfEhvg~~~~~~ff~~~~~~L~~~G~~llh~I~~~~~~~~ 185 (283)
T COG2230 108 LAYAEKRIAARGLEDNVEVRLQDYRDFE--EPFDRIVSVGMFEHVGKENYDDFFKKVYALLKPGGRMLLHSITGPDQEFR 185 (283)
T ss_pred HHHHHHHHHHcCCCcccEEEeccccccc--cccceeeehhhHHHhCcccHHHHHHHHHhhcCCCceEEEEEecCCCcccc
Confidence 9999999999999889999999998655 3499999999999998888999999999999999999987766554322
Q ss_pred CC-----------CcccCHHHHHHHHhcCCCcEEEEeeccc
Q 024008 222 GP-----------PYKVSVSDYEEVLQPMGFQAISIVDNKL 251 (274)
Q Consensus 222 ~~-----------~~~~~~~~~~~~~~~~Gf~~~~~~~~~~ 251 (274)
.. ....+..++.+..+++||.+.+......
T Consensus 186 ~~~~~i~~yiFPgG~lPs~~~i~~~~~~~~~~v~~~~~~~~ 226 (283)
T COG2230 186 RFPDFIDKYIFPGGELPSISEILELASEAGFVVLDVESLRP 226 (283)
T ss_pred cchHHHHHhCCCCCcCCCHHHHHHHHHhcCcEEehHhhhcH
Confidence 11 1113689999999999999988776543
No 15
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=99.82 E-value=1.9e-19 Score=154.31 Aligned_cols=141 Identities=15% Similarity=0.156 Sum_probs=115.4
Q ss_pred CCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCC-CCCCCeeEEEecccccc
Q 024008 108 PKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW-CPTELFDLIFDYTFFCA 186 (274)
Q Consensus 108 ~~~~vLDiG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~~~~~fD~v~~~~~~~~ 186 (274)
++.+|||||||+|..+..+++.|.+|+|+|+++++++.|+.+....+...+++++.+|+.+. ...++||+|++..+++|
T Consensus 131 ~g~~ILDIGCG~G~~s~~La~~g~~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~~~~~~FD~Vi~~~vLeH 210 (322)
T PLN02396 131 EGLKFIDIGCGGGLLSEPLARMGATVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLADEGRKFDAVLSLEVIEH 210 (322)
T ss_pred CCCEEEEeeCCCCHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhhhccCCCCEEEEhhHHHh
Confidence 45699999999999999999999999999999999999998876544445799999998773 44578999999999999
Q ss_pred cChhHHHHHHHHHHhcccCCcEEEEEEccCCC----------------CCCC---CCcccCHHHHHHHHhcCCCcEEEEe
Q 024008 187 IEPEMRAAWAQKIKDFLKPDGELITLMFPISD----------------HVGG---PPYKVSVSDYEEVLQPMGFQAISIV 247 (274)
Q Consensus 187 ~~~~~~~~~l~~l~~~L~~gG~l~~~~~~~~~----------------~~~~---~~~~~~~~~~~~~~~~~Gf~~~~~~ 247 (274)
+++ ...++.++.++|+|||.+++....... ...+ ...+++.+++.++++.+||+++++.
T Consensus 211 v~d--~~~~L~~l~r~LkPGG~liist~nr~~~~~~~~i~~~eyi~~~lp~gth~~~~f~tp~eL~~lL~~aGf~i~~~~ 288 (322)
T PLN02396 211 VAN--PAEFCKSLSALTIPNGATVLSTINRTMRAYASTIVGAEYILRWLPKGTHQWSSFVTPEELSMILQRASVDVKEMA 288 (322)
T ss_pred cCC--HHHHHHHHHHHcCCCcEEEEEECCcCHHHHHHhhhhHHHHHhcCCCCCcCccCCCCHHHHHHHHHHcCCeEEEEe
Confidence 964 367999999999999999998754321 0011 1124799999999999999999886
Q ss_pred ecc
Q 024008 248 DNK 250 (274)
Q Consensus 248 ~~~ 250 (274)
-..
T Consensus 289 G~~ 291 (322)
T PLN02396 289 GFV 291 (322)
T ss_pred eeE
Confidence 644
No 16
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=99.82 E-value=2.6e-19 Score=131.23 Aligned_cols=106 Identities=31% Similarity=0.430 Sum_probs=92.0
Q ss_pred CCCeEEEEcCCcchhHHHhhC--CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEccc-CCCCCCCCeeEEEecc-c
Q 024008 108 PKGRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADF-FTWCPTELFDLIFDYT-F 183 (274)
Q Consensus 108 ~~~~vLDiG~G~G~~~~~l~~--~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~-~~~~~~~~fD~v~~~~-~ 183 (274)
|+.+|||+|||+|..+..+++ ++.+++|+|+++++++.|+++....+..++++++.+|+ ......++||+|++.. .
T Consensus 1 p~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~~ 80 (112)
T PF12847_consen 1 PGGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDAEFDPDFLEPFDLVICSGFT 80 (112)
T ss_dssp TTCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCCHGGTTTSSCEEEEEECSGS
T ss_pred CCCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECccccCcccCCCCCEEEECCCc
Confidence 467999999999999999999 99999999999999999999996666778999999999 4455567899999999 5
Q ss_pred ccccC-hhHHHHHHHHHHhcccCCcEEEEEE
Q 024008 184 FCAIE-PEMRAAWAQKIKDFLKPDGELITLM 213 (274)
Q Consensus 184 ~~~~~-~~~~~~~l~~l~~~L~~gG~l~~~~ 213 (274)
++++. .+....+++++.+.|+|||++++..
T Consensus 81 ~~~~~~~~~~~~~l~~~~~~L~pgG~lvi~~ 111 (112)
T PF12847_consen 81 LHFLLPLDERRRVLERIRRLLKPGGRLVINT 111 (112)
T ss_dssp GGGCCHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred cccccchhHHHHHHHHHHHhcCCCcEEEEEE
Confidence 55333 2577889999999999999999865
No 17
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=99.82 E-value=7.2e-19 Score=147.64 Aligned_cols=142 Identities=19% Similarity=0.154 Sum_probs=112.5
Q ss_pred CCCCeEEEEcCCcchhHHHhhCC---CCeEEEEeCChHHHHHHHHHhhc--CCCCcceEEEEcccCC-CCCCCCeeEEEe
Q 024008 107 LPKGRALVPGCGTGYDVVAMASP---ERYVVGLEISDIAIKKAEELSSS--LPNAKFVSFLKADFFT-WCPTELFDLIFD 180 (274)
Q Consensus 107 ~~~~~vLDiG~G~G~~~~~l~~~---~~~v~~iD~s~~~~~~a~~~~~~--~~~~~~v~~~~~d~~~-~~~~~~fD~v~~ 180 (274)
.++.+|||+|||+|..+..+++. ..+|+|+|+|+++++.|+++... .....+++++++|+.+ +.++++||+|++
T Consensus 72 ~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~lp~~~~sfD~V~~ 151 (261)
T PLN02233 72 KMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDLPFDDCYFDAITM 151 (261)
T ss_pred CCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccCCCCCCCEeEEEE
Confidence 45679999999999999888763 35999999999999999877542 1122479999999988 456679999999
Q ss_pred cccccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCC--------------------C--C---------CcccCH
Q 024008 181 YTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVG--------------------G--P---------PYKVSV 229 (274)
Q Consensus 181 ~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~~~--------------------~--~---------~~~~~~ 229 (274)
..++++++ +...+++++.++|+|||++++.++....... + . ..+.+.
T Consensus 152 ~~~l~~~~--d~~~~l~ei~rvLkpGG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~l~~s~~~f~s~ 229 (261)
T PLN02233 152 GYGLRNVV--DRLKAMQEMYRVLKPGSRVSILDFNKSTQPFTTSMQEWMIDNVVVPVATGYGLAKEYEYLKSSINEYLTG 229 (261)
T ss_pred ecccccCC--CHHHHHHHHHHHcCcCcEEEEEECCCCCcHHHHHHHHHHHhhhhhHHHHHhCChHHHHHHHHHHHhcCCH
Confidence 99999985 4577899999999999999998876543200 0 0 123589
Q ss_pred HHHHHHHhcCCCcEEEEeecc
Q 024008 230 SDYEEVLQPMGFQAISIVDNK 250 (274)
Q Consensus 230 ~~~~~~~~~~Gf~~~~~~~~~ 250 (274)
+++.++++++||+.+......
T Consensus 230 ~el~~ll~~aGF~~~~~~~~~ 250 (261)
T PLN02233 230 EELEKLALEAGFSSAKHYEIS 250 (261)
T ss_pred HHHHHHHHHCCCCEEEEEEcC
Confidence 999999999999988766643
No 18
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=99.81 E-value=5.9e-19 Score=148.28 Aligned_cols=163 Identities=21% Similarity=0.242 Sum_probs=119.0
Q ss_pred HHHHHhcCC-CCCCeEEEEcCCcchhHHHhhCC-CCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCe
Q 024008 98 IVHLHQSGA-LPKGRALVPGCGTGYDVVAMASP-ERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELF 175 (274)
Q Consensus 98 ~~~~~~~~~-~~~~~vLDiG~G~G~~~~~l~~~-~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~f 175 (274)
+..+++... .++.+|||||||.|..+..+++. |++|+|+++|+++.+.+++.+...++.+++++...|..+... +|
T Consensus 51 ~~~~~~~~~l~~G~~vLDiGcGwG~~~~~~a~~~g~~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~~~~--~f 128 (273)
T PF02353_consen 51 LDLLCEKLGLKPGDRVLDIGCGWGGLAIYAAERYGCHVTGITLSEEQAEYARERIREAGLEDRVEVRLQDYRDLPG--KF 128 (273)
T ss_dssp HHHHHTTTT--TT-EEEEES-TTSHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-GGG-----S-
T ss_pred HHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHcCcEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEeeccccCC--CC
Confidence 444455554 45679999999999999999996 999999999999999999999999998999999999986543 99
Q ss_pred eEEEecccccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCC-----CC-C----------CCcccCHHHHHHHHhcC
Q 024008 176 DLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDH-----VG-G----------PPYKVSVSDYEEVLQPM 239 (274)
Q Consensus 176 D~v~~~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~-----~~-~----------~~~~~~~~~~~~~~~~~ 239 (274)
|.|++..+++|+.......+++++.++|+|||++++........ .. . .....+..++...++..
T Consensus 129 D~IvSi~~~Ehvg~~~~~~~f~~~~~~LkpgG~~~lq~i~~~~~~~~~~~~~~~~~i~kyiFPgg~lps~~~~~~~~~~~ 208 (273)
T PF02353_consen 129 DRIVSIEMFEHVGRKNYPAFFRKISRLLKPGGRLVLQTITHRDPPYHAERRSSSDFIRKYIFPGGYLPSLSEILRAAEDA 208 (273)
T ss_dssp SEEEEESEGGGTCGGGHHHHHHHHHHHSETTEEEEEEEEEE--HHHHHCTTCCCHHHHHHTSTTS---BHHHHHHHHHHT
T ss_pred CEEEEEechhhcChhHHHHHHHHHHHhcCCCcEEEEEecccccccchhhcCCCceEEEEeeCCCCCCCCHHHHHHHHhcC
Confidence 99999999999988888999999999999999998755443221 00 0 01123788999999999
Q ss_pred CCcEEEEeecccccCCccchhHHHHhhh
Q 024008 240 GFQAISIVDNKLAIGPRKGREKLGRWKR 267 (274)
Q Consensus 240 Gf~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (274)
||++..+......+. +++..|++
T Consensus 209 ~l~v~~~~~~~~hY~-----~Tl~~W~~ 231 (273)
T PF02353_consen 209 GLEVEDVENLGRHYA-----RTLRAWRE 231 (273)
T ss_dssp T-EEEEEEE-HHHHH-----HHHHHHHH
T ss_pred CEEEEEEEEcCcCHH-----HHHHHHHH
Confidence 999998887654443 55555554
No 19
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=99.80 E-value=2e-18 Score=147.19 Aligned_cols=150 Identities=15% Similarity=0.225 Sum_probs=119.8
Q ss_pred cHHHHHHHhcCCCCCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCC
Q 024008 95 APIIVHLHQSGALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTEL 174 (274)
Q Consensus 95 ~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~ 174 (274)
...+...+.. .++.+|||+|||+|.++..+++.|.+|+|+|+|+.+++.++++....++ ++++...|+.....+++
T Consensus 109 ~~~~~~~~~~--~~~~~vLDlGcG~G~~~~~la~~g~~V~avD~s~~ai~~~~~~~~~~~l--~v~~~~~D~~~~~~~~~ 184 (287)
T PRK12335 109 HSEVLEAVQT--VKPGKALDLGCGQGRNSLYLALLGFDVTAVDINQQSLENLQEIAEKENL--NIRTGLYDINSASIQEE 184 (287)
T ss_pred cHHHHHHhhc--cCCCCEEEeCCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcCC--ceEEEEechhcccccCC
Confidence 3444444442 4457999999999999999999999999999999999999999887765 58888889876545788
Q ss_pred eeEEEecccccccChhHHHHHHHHHHhcccCCcEEEEEE-ccCCCCCCCC--CcccCHHHHHHHHhcCCCcEEEEeecc
Q 024008 175 FDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLM-FPISDHVGGP--PYKVSVSDYEEVLQPMGFQAISIVDNK 250 (274)
Q Consensus 175 fD~v~~~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~-~~~~~~~~~~--~~~~~~~~~~~~~~~~Gf~~~~~~~~~ 250 (274)
||+|++..++++++++....++.++.++|+|||++++.. +...+..... ++.++.+++.+.+.. |+++...+..
T Consensus 185 fD~I~~~~vl~~l~~~~~~~~l~~~~~~LkpgG~~l~v~~~~~~~~~~~~p~~~~~~~~el~~~~~~--~~i~~~~e~~ 261 (287)
T PRK12335 185 YDFILSTVVLMFLNRERIPAIIKNMQEHTNPGGYNLIVCAMDTEDYPCPMPFSFTFKEGELKDYYQD--WEIVKYNENV 261 (287)
T ss_pred ccEEEEcchhhhCCHHHHHHHHHHHHHhcCCCcEEEEEEecccccCCCCCCCCcccCHHHHHHHhCC--CEEEEEeccc
Confidence 999999999999988888999999999999999976644 3322222122 455899999999975 9998886643
No 20
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=99.80 E-value=1.7e-18 Score=144.48 Aligned_cols=108 Identities=18% Similarity=0.215 Sum_probs=93.8
Q ss_pred CCCCCeEEEEcCCcchhHHHhhC----CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCeeEEEec
Q 024008 106 ALPKGRALVPGCGTGYDVVAMAS----PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDY 181 (274)
Q Consensus 106 ~~~~~~vLDiG~G~G~~~~~l~~----~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~ 181 (274)
..++.+|||+|||+|..+..+++ ++.+++|+|+|+.+++.|++++...+...+++++.+|+..... ..+|+|+++
T Consensus 54 ~~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~~-~~~D~vv~~ 132 (247)
T PRK15451 54 VQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAI-ENASMVVLN 132 (247)
T ss_pred CCCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCCC-CCCCEEehh
Confidence 34568999999999999887765 5789999999999999999999877666689999999987433 359999999
Q ss_pred ccccccChhHHHHHHHHHHhcccCCcEEEEEEc
Q 024008 182 TFFCAIEPEMRAAWAQKIKDFLKPDGELITLMF 214 (274)
Q Consensus 182 ~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~ 214 (274)
.++++++++....++++++++|+|||.+++.+.
T Consensus 133 ~~l~~l~~~~~~~~l~~i~~~LkpGG~l~l~e~ 165 (247)
T PRK15451 133 FTLQFLEPSERQALLDKIYQGLNPGGALVLSEK 165 (247)
T ss_pred hHHHhCCHHHHHHHHHHHHHhcCCCCEEEEEEe
Confidence 999999877788999999999999999999773
No 21
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=99.79 E-value=4.8e-18 Score=145.05 Aligned_cols=152 Identities=20% Similarity=0.247 Sum_probs=113.0
Q ss_pred HHHhcC-CCCCCeEEEEcCCcchhHHHhhCCCC-eEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCeeE
Q 024008 100 HLHQSG-ALPKGRALVPGCGTGYDVVAMASPER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDL 177 (274)
Q Consensus 100 ~~~~~~-~~~~~~vLDiG~G~G~~~~~l~~~~~-~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~ 177 (274)
.++... ..++++|||+|||+|..+..++..+. .|+|+|+|+.++..++..........++.+..+++.+..+.+.||+
T Consensus 112 ~~l~~l~~~~g~~VLDvGCG~G~~~~~~~~~g~~~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~lp~~~~FD~ 191 (314)
T TIGR00452 112 RVLPHLSPLKGRTILDVGCGSGYHMWRMLGHGAKSLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQLHELYAFDT 191 (314)
T ss_pred HHHHhcCCCCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHHHCCCCCCcCE
Confidence 344433 45678999999999999998888776 7999999999987654322221112468888888877555568999
Q ss_pred EEecccccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCC-------------CCCCcccCHHHHHHHHhcCCCcEE
Q 024008 178 IFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHV-------------GGPPYKVSVSDYEEVLQPMGFQAI 244 (274)
Q Consensus 178 v~~~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~Gf~~~ 244 (274)
|+++++++|+. +...++.+++++|+|||.+++......... .+..+..+..++.++++++||+.+
T Consensus 192 V~s~gvL~H~~--dp~~~L~el~r~LkpGG~Lvletl~i~g~~~~~l~p~~ry~k~~nv~flpS~~~L~~~L~~aGF~~V 269 (314)
T TIGR00452 192 VFSMGVLYHRK--SPLEHLKQLKHQLVIKGELVLETLVIDGDLNTVLVPKDRYAKMKNVYFIPSVSALKNWLEKVGFENF 269 (314)
T ss_pred EEEcchhhccC--CHHHHHHHHHHhcCCCCEEEEEEEEecCccccccCchHHHHhccccccCCCHHHHHHHHHHCCCeEE
Confidence 99999999985 335789999999999999998654332110 112234589999999999999999
Q ss_pred EEeeccccc
Q 024008 245 SIVDNKLAI 253 (274)
Q Consensus 245 ~~~~~~~~~ 253 (274)
++......-
T Consensus 270 ~i~~~~~tt 278 (314)
T TIGR00452 270 RILDVLKTT 278 (314)
T ss_pred EEEeccCCC
Confidence 988755543
No 22
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=99.79 E-value=3.3e-18 Score=140.88 Aligned_cols=142 Identities=24% Similarity=0.320 Sum_probs=116.9
Q ss_pred CeEEEEcCCcchhHHHhhC--CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCeeEEEeccccccc
Q 024008 110 GRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFCAI 187 (274)
Q Consensus 110 ~~vLDiG~G~G~~~~~l~~--~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~~~~~~ 187 (274)
.+|||+|||+|..+..+++ ++.+++|+|+|+++++.++++....++.++++++..|+......++||+|++..+++++
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~~~~~~fD~I~~~~~l~~~ 80 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKDPFPDTYDLVFGFEVIHHI 80 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccCCCCCCCCEeehHHHHHhC
Confidence 3799999999999998887 35799999999999999999998888878899999999764335689999999999998
Q ss_pred ChhHHHHHHHHHHhcccCCcEEEEEEccCCC-----CCCCCCcccCHHHHHHHHhcCCCcEEEEeeccccc
Q 024008 188 EPEMRAAWAQKIKDFLKPDGELITLMFPISD-----HVGGPPYKVSVSDYEEVLQPMGFQAISIVDNKLAI 253 (274)
Q Consensus 188 ~~~~~~~~l~~l~~~L~~gG~l~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~Gf~~~~~~~~~~~~ 253 (274)
. +...+++++.++|+|||.+++.++.... ......+..+..++.++++++||++++.......+
T Consensus 81 ~--~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~~Gf~~~~~~~~~~~~ 149 (224)
T smart00828 81 K--DKMDLFSNISRHLKDGGHLVLADFIANLLSAIEHEETTSYLVTREEWAELLARNNLRVVEGVDASLEI 149 (224)
T ss_pred C--CHHHHHHHHHHHcCCCCEEEEEEcccccCccccccccccccCCHHHHHHHHHHCCCeEEEeEECcHhH
Confidence 5 3578999999999999999988754321 11122345688999999999999999988765544
No 23
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=99.78 E-value=5.3e-18 Score=146.22 Aligned_cols=145 Identities=24% Similarity=0.345 Sum_probs=110.8
Q ss_pred CCCCCeEEEEcCCcchhHHHhhCCCC-eEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCeeEEEecccc
Q 024008 106 ALPKGRALVPGCGTGYDVVAMASPER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFF 184 (274)
Q Consensus 106 ~~~~~~vLDiG~G~G~~~~~l~~~~~-~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~~~ 184 (274)
..++.+|||||||+|..+..++..+. .|+|+|+|+.++..++......+...++.++.+|+......+.||+|++..++
T Consensus 120 ~l~g~~VLDIGCG~G~~~~~la~~g~~~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp~~~~FD~V~s~~vl 199 (322)
T PRK15068 120 PLKGRTVLDVGCGNGYHMWRMLGAGAKLVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLPALKAFDTVFSMGVL 199 (322)
T ss_pred CCCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHCCCcCCcCEEEECChh
Confidence 35678999999999999999988765 69999999998876544332222224799999999875447889999999999
Q ss_pred cccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCC-------------CCCCcccCHHHHHHHHhcCCCcEEEEeeccc
Q 024008 185 CAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHV-------------GGPPYKVSVSDYEEVLQPMGFQAISIVDNKL 251 (274)
Q Consensus 185 ~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~Gf~~~~~~~~~~ 251 (274)
+|+. +...++.+++++|+|||.+++......... .+..+..+..++.++++++||+.+.+.+...
T Consensus 200 ~H~~--dp~~~L~~l~~~LkpGG~lvl~~~~i~~~~~~~l~p~~~y~~~~~~~~lps~~~l~~~L~~aGF~~i~~~~~~~ 277 (322)
T PRK15068 200 YHRR--SPLDHLKQLKDQLVPGGELVLETLVIDGDENTVLVPGDRYAKMRNVYFIPSVPALKNWLERAGFKDVRIVDVSV 277 (322)
T ss_pred hccC--CHHHHHHHHHHhcCCCcEEEEEEEEecCCCccccCchhHHhcCccceeCCCHHHHHHHHHHcCCceEEEEeCCC
Confidence 9985 346789999999999999988654322110 1112234889999999999999999987654
Q ss_pred c
Q 024008 252 A 252 (274)
Q Consensus 252 ~ 252 (274)
.
T Consensus 278 t 278 (322)
T PRK15068 278 T 278 (322)
T ss_pred C
Confidence 4
No 24
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=99.78 E-value=1e-17 Score=139.20 Aligned_cols=138 Identities=17% Similarity=0.206 Sum_probs=110.1
Q ss_pred CCCCeEEEEcCCcchhHHHhhC----CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCeeEEEecc
Q 024008 107 LPKGRALVPGCGTGYDVVAMAS----PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYT 182 (274)
Q Consensus 107 ~~~~~vLDiG~G~G~~~~~l~~----~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~ 182 (274)
.++.+|||+|||+|..+..+++ ++.+++|+|+++.+++.|+++....+...+++++.+|+..... ..+|+|++..
T Consensus 52 ~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~~-~~~d~v~~~~ 130 (239)
T TIGR00740 52 TPDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEI-KNASMVILNF 130 (239)
T ss_pred CCCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCCC-CCCCEEeeec
Confidence 4567999999999999988876 4779999999999999999998766555679999999987543 3589999999
Q ss_pred cccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCC----------------C---------------CCCcccCHHH
Q 024008 183 FFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHV----------------G---------------GPPYKVSVSD 231 (274)
Q Consensus 183 ~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~~----------------~---------------~~~~~~~~~~ 231 (274)
+++++++++...+++++.++|+|||.+++.+....... . +.....+.++
T Consensus 131 ~l~~~~~~~~~~~l~~i~~~LkpgG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~~~ 210 (239)
T TIGR00740 131 TLQFLPPEDRIALLTKIYEGLNPNGVLVLSEKFRFEDTKINHLLIDLHHQFKRANGYSELEISQKRTALENVMRTDSIET 210 (239)
T ss_pred chhhCCHHHHHHHHHHHHHhcCCCeEEEEeecccCCCHhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhccCCCCCHHH
Confidence 99999877788999999999999999999864322110 0 1123457888
Q ss_pred HHHHHhcCCCcEEE
Q 024008 232 YEEVLQPMGFQAIS 245 (274)
Q Consensus 232 ~~~~~~~~Gf~~~~ 245 (274)
+.++++++||..+.
T Consensus 211 ~~~~l~~aGF~~~~ 224 (239)
T TIGR00740 211 HKARLKNVGFSHVE 224 (239)
T ss_pred HHHHHHHcCCchHH
Confidence 88888888887543
No 25
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=99.78 E-value=1.3e-17 Score=138.06 Aligned_cols=150 Identities=17% Similarity=0.173 Sum_probs=115.9
Q ss_pred HHHHhcCC-CCCCeEEEEcCCcchhHHHhhC---CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC-CCCCC
Q 024008 99 VHLHQSGA-LPKGRALVPGCGTGYDVVAMAS---PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT-WCPTE 173 (274)
Q Consensus 99 ~~~~~~~~-~~~~~vLDiG~G~G~~~~~l~~---~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~~~~ 173 (274)
..++.... .++.+|||+|||+|..+..+++ ++.+++|+|+++.+++.++++....+. ++++++.+|+.. ..+.+
T Consensus 35 ~~~l~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~~~~~~ 113 (231)
T TIGR02752 35 KDTMKRMNVQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGL-HNVELVHGNAMELPFDDN 113 (231)
T ss_pred HHHHHhcCCCCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCC-CceEEEEechhcCCCCCC
Confidence 33444433 3457999999999999998876 356999999999999999999876655 579999999987 34567
Q ss_pred CeeEEEecccccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCC--------------------------------
Q 024008 174 LFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVG-------------------------------- 221 (274)
Q Consensus 174 ~fD~v~~~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~~~-------------------------------- 221 (274)
+||+|++..++++++ ....++.++.++|+|||++++.+.+......
T Consensus 114 ~fD~V~~~~~l~~~~--~~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 191 (231)
T TIGR02752 114 SFDYVTIGFGLRNVP--DYMQVLREMYRVVKPGGKVVCLETSQPTIPGFKQLYFFYFKYIMPLFGKLFAKSYKEYSWLQE 191 (231)
T ss_pred CccEEEEecccccCC--CHHHHHHHHHHHcCcCeEEEEEECCCCCChHHHHHHHHHHcChhHHhhHHhcCCHHHHHHHHH
Confidence 999999999988875 3457899999999999999987754322100
Q ss_pred CCCcccCHHHHHHHHhcCCCcEEEEeeccc
Q 024008 222 GPPYKVSVSDYEEVLQPMGFQAISIVDNKL 251 (274)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~Gf~~~~~~~~~~ 251 (274)
......+.+++.++++++||+.+++.....
T Consensus 192 ~~~~~~~~~~l~~~l~~aGf~~~~~~~~~~ 221 (231)
T TIGR02752 192 STRDFPGMDELAEMFQEAGFKDVEVKSYTG 221 (231)
T ss_pred HHHHcCCHHHHHHHHHHcCCCeeEEEEccc
Confidence 001124678999999999999998877553
No 26
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=99.77 E-value=2.6e-18 Score=137.78 Aligned_cols=138 Identities=17% Similarity=0.195 Sum_probs=114.3
Q ss_pred CCCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCC-CCCeeEEEeccccc
Q 024008 107 LPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP-TELFDLIFDYTFFC 185 (274)
Q Consensus 107 ~~~~~vLDiG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~-~~~fD~v~~~~~~~ 185 (274)
.++.+|||+|||-|.++..+++.|+.|+|+|+++..++.|+.+..+.++. +++....+++... .++||+|+|..+++
T Consensus 58 l~g~~vLDvGCGgG~Lse~mAr~Ga~VtgiD~se~~I~~Ak~ha~e~gv~--i~y~~~~~edl~~~~~~FDvV~cmEVlE 135 (243)
T COG2227 58 LPGLRVLDVGCGGGILSEPLARLGASVTGIDASEKPIEVAKLHALESGVN--IDYRQATVEDLASAGGQFDVVTCMEVLE 135 (243)
T ss_pred CCCCeEEEecCCccHhhHHHHHCCCeeEEecCChHHHHHHHHhhhhcccc--ccchhhhHHHHHhcCCCccEEEEhhHHH
Confidence 57899999999999999999999999999999999999999999888753 7788888777433 38999999999999
Q ss_pred ccChhHHHHHHHHHHhcccCCcEEEEEEccCCCC----------------CCCC---CcccCHHHHHHHHhcCCCcEEEE
Q 024008 186 AIEPEMRAAWAQKIKDFLKPDGELITLMFPISDH----------------VGGP---PYKVSVSDYEEVLQPMGFQAISI 246 (274)
Q Consensus 186 ~~~~~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~----------------~~~~---~~~~~~~~~~~~~~~~Gf~~~~~ 246 (274)
|++++ ..++..+.+.+||||.+++...+.... ..++ .-++.++++..++..+|+.+.+.
T Consensus 136 Hv~dp--~~~~~~c~~lvkP~G~lf~STinrt~ka~~~~i~~ae~vl~~vP~gTH~~~k~irp~El~~~~~~~~~~~~~~ 213 (243)
T COG2227 136 HVPDP--ESFLRACAKLVKPGGILFLSTINRTLKAYLLAIIGAEYVLRIVPKGTHDYRKFIKPAELIRWLLGANLKIIDR 213 (243)
T ss_pred ccCCH--HHHHHHHHHHcCCCcEEEEeccccCHHHHHHHHHHHHHHHHhcCCcchhHHHhcCHHHHHHhcccCCceEEee
Confidence 99644 569999999999999999987654321 1111 12357899999999999988776
Q ss_pred ee
Q 024008 247 VD 248 (274)
Q Consensus 247 ~~ 248 (274)
..
T Consensus 214 ~g 215 (243)
T COG2227 214 KG 215 (243)
T ss_pred cc
Confidence 65
No 27
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=99.77 E-value=1.6e-17 Score=139.39 Aligned_cols=157 Identities=18% Similarity=0.173 Sum_probs=114.5
Q ss_pred HHHHhcCC-CCCCeEEEEcCCcchhHHHhhC--CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCe
Q 024008 99 VHLHQSGA-LPKGRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELF 175 (274)
Q Consensus 99 ~~~~~~~~-~~~~~vLDiG~G~G~~~~~l~~--~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~f 175 (274)
..++.... .++.+|||+|||+|..+..+++ ++.+|+|+|+|+.+++.|++. +++++.+|+....+.++|
T Consensus 19 ~~ll~~l~~~~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~~--------~~~~~~~d~~~~~~~~~f 90 (255)
T PRK14103 19 YDLLARVGAERARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARER--------GVDARTGDVRDWKPKPDT 90 (255)
T ss_pred HHHHHhCCCCCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHhc--------CCcEEEcChhhCCCCCCc
Confidence 34444443 4568999999999999999987 478999999999999999763 378999999876566799
Q ss_pred eEEEecccccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCC------------------CCC-----CCcccCHHHH
Q 024008 176 DLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDH------------------VGG-----PPYKVSVSDY 232 (274)
Q Consensus 176 D~v~~~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~------------------~~~-----~~~~~~~~~~ 232 (274)
|+|+++.+++++++ ...++.++.++|+|||.+++...+.... ... .....+.+++
T Consensus 91 D~v~~~~~l~~~~d--~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~ 168 (255)
T PRK14103 91 DVVVSNAALQWVPE--HADLLVRWVDELAPGSWIAVQVPGNFDAPSHAAVRALARREPWAKLLRDIPFRVGAVVQTPAGY 168 (255)
T ss_pred eEEEEehhhhhCCC--HHHHHHHHHHhCCCCcEEEEEcCCCcCChhHHHHHHHhccCchhHHhcccccccCcCCCCHHHH
Confidence 99999999999863 4678999999999999998865432110 000 1123579999
Q ss_pred HHHHhcCCCcEEEEeecccccCCccchhHHHHhhh
Q 024008 233 EEVLQPMGFQAISIVDNKLAIGPRKGREKLGRWKR 267 (274)
Q Consensus 233 ~~~~~~~Gf~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (274)
.++++++||++...... ... ...+.+.+..|.+
T Consensus 169 ~~~l~~aGf~v~~~~~~-~~~-~~~~~~~~~~~~~ 201 (255)
T PRK14103 169 AELLTDAGCKVDAWETT-YVH-QLTGEDPVLDWIT 201 (255)
T ss_pred HHHHHhCCCeEEEEeee-eee-eCCCchhhhhhhh
Confidence 99999999986544432 211 2233454555554
No 28
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=99.76 E-value=3.6e-17 Score=134.23 Aligned_cols=145 Identities=18% Similarity=0.197 Sum_probs=114.4
Q ss_pred CCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCeeEEEeccccccc
Q 024008 108 PKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFCAI 187 (274)
Q Consensus 108 ~~~~vLDiG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~~~~~~ 187 (274)
++.+|||+|||+|..+..++..+.+++|+|++++++..|+++....+...++.|..+|+.... ++||+|++..+++++
T Consensus 55 ~~~~vLDiGcG~G~~~~~la~~~~~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~--~~fD~ii~~~~l~~~ 132 (219)
T TIGR02021 55 KGKRVLDAGCGTGLLSIELAKRGAIVKAVDISEQMVQMARNRAQGRDVAGNVEFEVNDLLSLC--GEFDIVVCMDVLIHY 132 (219)
T ss_pred CCCEEEEEeCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChhhCC--CCcCEEEEhhHHHhC
Confidence 467999999999999999998888999999999999999999877665557999999987654 789999999999888
Q ss_pred ChhHHHHHHHHHHhcccCCcEEEEEEccCC-------------CCCCCCCcccCHHHHHHHHhcCCCcEEEEeecccccC
Q 024008 188 EPEMRAAWAQKIKDFLKPDGELITLMFPIS-------------DHVGGPPYKVSVSDYEEVLQPMGFQAISIVDNKLAIG 254 (274)
Q Consensus 188 ~~~~~~~~l~~l~~~L~~gG~l~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~Gf~~~~~~~~~~~~~ 254 (274)
+++....++.++.+++++++.+.+...... .......+.++.+++.++++.+||+++........+.
T Consensus 133 ~~~~~~~~l~~i~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~v~~~~~~~~~~~ 212 (219)
T TIGR02021 133 PASDMAKALGHLASLTKERVIFTFAPKTAWLAFLKMIGELFPGSSRATSAYLHPMTDLERALGELGWKIVREGLVSTGFY 212 (219)
T ss_pred CHHHHHHHHHHHHHHhCCCEEEEECCCchHHHHHHHHHhhCcCcccccceEEecHHHHHHHHHHcCceeeeeecccccch
Confidence 777778899999999886655544321110 0001112346899999999999999998876554443
No 29
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.76 E-value=3e-17 Score=149.60 Aligned_cols=168 Identities=23% Similarity=0.264 Sum_probs=124.3
Q ss_pred cchhHhhhcCCCCccCCCccHHHHHHHhcCC-CCCCeEEEEcCCcchhHHHhhC-CCCeEEEEeCChHHHHHHHHHhhcC
Q 024008 76 GGWEKCWEEGLTPWDIGQPAPIIVHLHQSGA-LPKGRALVPGCGTGYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSL 153 (274)
Q Consensus 76 ~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~vLDiG~G~G~~~~~l~~-~~~~v~~iD~s~~~~~~a~~~~~~~ 153 (274)
..|..+|..+..- .........++.... .++.+|||+|||+|..+..+++ .+.+++|+|+|+.+++.|+++....
T Consensus 236 ~~~~~f~g~~~~v---~~~v~~te~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvDiS~~~l~~A~~~~~~~ 312 (475)
T PLN02336 236 LRYERVFGEGFVS---TGGLETTKEFVDKLDLKPGQKVLDVGCGIGGGDFYMAENFDVHVVGIDLSVNMISFALERAIGR 312 (475)
T ss_pred HHHHHHhCCCCCC---CchHHHHHHHHHhcCCCCCCEEEEEeccCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHhhcC
Confidence 3466666553321 111223344554443 3457999999999999988887 5779999999999999999887533
Q ss_pred CCCcceEEEEcccCCC-CCCCCeeEEEecccccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCC----------
Q 024008 154 PNAKFVSFLKADFFTW-CPTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGG---------- 222 (274)
Q Consensus 154 ~~~~~v~~~~~d~~~~-~~~~~fD~v~~~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~~~~---------- 222 (274)
..+++|..+|+... .++++||+|++..+++|++ +...++.+++++|+|||.+++.++........
T Consensus 313 --~~~v~~~~~d~~~~~~~~~~fD~I~s~~~l~h~~--d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~ 388 (475)
T PLN02336 313 --KCSVEFEVADCTKKTYPDNSFDVIYSRDTILHIQ--DKPALFRSFFKWLKPGGKVLISDYCRSPGTPSPEFAEYIKQR 388 (475)
T ss_pred --CCceEEEEcCcccCCCCCCCEEEEEECCcccccC--CHHHHHHHHHHHcCCCeEEEEEEeccCCCCCcHHHHHHHHhc
Confidence 35799999999874 4567899999999999985 34688999999999999999987654321111
Q ss_pred CCcccCHHHHHHHHhcCCCcEEEEeecc
Q 024008 223 PPYKVSVSDYEEVLQPMGFQAISIVDNK 250 (274)
Q Consensus 223 ~~~~~~~~~~~~~~~~~Gf~~~~~~~~~ 250 (274)
.....+..++.++++++||+++.+++..
T Consensus 389 g~~~~~~~~~~~~l~~aGF~~i~~~d~~ 416 (475)
T PLN02336 389 GYDLHDVQAYGQMLKDAGFDDVIAEDRT 416 (475)
T ss_pred CCCCCCHHHHHHHHHHCCCeeeeeecch
Confidence 0123578999999999999999877644
No 30
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=99.75 E-value=1.7e-17 Score=129.27 Aligned_cols=135 Identities=27% Similarity=0.336 Sum_probs=104.6
Q ss_pred HHHHHHhcCCCCCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC-CCCCCCe
Q 024008 97 IIVHLHQSGALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT-WCPTELF 175 (274)
Q Consensus 97 ~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~~~~~f 175 (274)
.+.++... ..++.+|||+|||+|.++..+++.+.+++|+|+++.+++. . ++.....+... ..++++|
T Consensus 12 ~~~~~~~~-~~~~~~vLDiGcG~G~~~~~l~~~~~~~~g~D~~~~~~~~-------~----~~~~~~~~~~~~~~~~~~f 79 (161)
T PF13489_consen 12 LLERLLPR-LKPGKRVLDIGCGTGSFLRALAKRGFEVTGVDISPQMIEK-------R----NVVFDNFDAQDPPFPDGSF 79 (161)
T ss_dssp HHHHHHTC-TTTTSEEEEESSTTSHHHHHHHHTTSEEEEEESSHHHHHH-------T----TSEEEEEECHTHHCHSSSE
T ss_pred HHHHHhcc-cCCCCEEEEEcCCCCHHHHHHHHhCCEEEEEECCHHHHhh-------h----hhhhhhhhhhhhhccccch
Confidence 34444432 3556899999999999999998889999999999999988 1 13333333323 4566899
Q ss_pred eEEEecccccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCC-------------CCCCCcccCHHHHHHHHhcCCCc
Q 024008 176 DLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDH-------------VGGPPYKVSVSDYEEVLQPMGFQ 242 (274)
Q Consensus 176 D~v~~~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~Gf~ 242 (274)
|+|+++.+++|++ +...+++++.++|+|||++++........ ..+....++.+++.++++++||+
T Consensus 80 D~i~~~~~l~~~~--d~~~~l~~l~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~G~~ 157 (161)
T PF13489_consen 80 DLIICNDVLEHLP--DPEEFLKELSRLLKPGGYLVISDPNRDDPSPRSFLKWRYDRPYGGHVHFFSPDELRQLLEQAGFE 157 (161)
T ss_dssp EEEEEESSGGGSS--HHHHHHHHHHHCEEEEEEEEEEEEBTTSHHHHHHHHCCGTCHHTTTTEEBBHHHHHHHHHHTTEE
T ss_pred hhHhhHHHHhhcc--cHHHHHHHHHHhcCCCCEEEEEEcCCcchhhhHHHhcCCcCccCceeccCCHHHHHHHHHHCCCE
Confidence 9999999999997 46789999999999999999988765310 11223457999999999999999
Q ss_pred EEE
Q 024008 243 AIS 245 (274)
Q Consensus 243 ~~~ 245 (274)
+++
T Consensus 158 iv~ 160 (161)
T PF13489_consen 158 IVE 160 (161)
T ss_dssp EEE
T ss_pred EEE
Confidence 875
No 31
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=99.74 E-value=2.1e-16 Score=135.18 Aligned_cols=186 Identities=16% Similarity=0.209 Sum_probs=123.4
Q ss_pred HHHHHHHHhhcccccchhHhhhcCCC----CccCC----CccHHHHHHHhcC-CCCCCeEEEEcCCcchhHHHhhCCCCe
Q 024008 62 RVNKLQQLMHIESSGGWEKCWEEGLT----PWDIG----QPAPIIVHLHQSG-ALPKGRALVPGCGTGYDVVAMASPERY 132 (274)
Q Consensus 62 ~~~~~~~~~~~~~~~~w~~~~~~~~~----~~~~~----~~~~~~~~~~~~~-~~~~~~vLDiG~G~G~~~~~l~~~~~~ 132 (274)
.......++.+.....|...|..... .++.. .....+..++... ..++.+|||+|||+|..+..+++.|.+
T Consensus 89 ~~~~V~~~Fd~~a~~~w~~iy~~~d~v~~~~l~~~~~~~~~v~~~l~~l~~~~~~~~~~VLDlGcGtG~~a~~la~~g~~ 168 (315)
T PLN02585 89 DKEVVREYFNTTGFERWRKIYGETDEVNKVQLDIRLGHAQTVEKVLLWLAEDGSLAGVTVCDAGCGTGSLAIPLALEGAI 168 (315)
T ss_pred HHHHHHHHhcccchhhHHHhcCCccccCceeeecccChHHHHHHHHHHHHhcCCCCCCEEEEecCCCCHHHHHHHHCCCE
Confidence 34455555554445667777775221 11111 1112233333322 235679999999999999999999999
Q ss_pred EEEEeCChHHHHHHHHHhhcCCC----CcceEEEEcccCCCCCCCCeeEEEecccccccChhHHHHHHHHHHhcccCCcE
Q 024008 133 VVGLEISDIAIKKAEELSSSLPN----AKFVSFLKADFFTWCPTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGE 208 (274)
Q Consensus 133 v~~iD~s~~~~~~a~~~~~~~~~----~~~v~~~~~d~~~~~~~~~fD~v~~~~~~~~~~~~~~~~~l~~l~~~L~~gG~ 208 (274)
|+|+|+|+.+++.|+++...... ..+++|...|+... .++||+|++..+++|++++....++..+.+ +.+||.
T Consensus 169 V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~l--~~~fD~Vv~~~vL~H~p~~~~~~ll~~l~~-l~~g~l 245 (315)
T PLN02585 169 VSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLESL--SGKYDTVTCLDVLIHYPQDKADGMIAHLAS-LAEKRL 245 (315)
T ss_pred EEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhhc--CCCcCEEEEcCEEEecCHHHHHHHHHHHHh-hcCCEE
Confidence 99999999999999999765421 23578999997643 478999999999988876666667777775 455655
Q ss_pred EEEEEccCC---------CCCCCC-----CcccCHHHHHHHHhcCCCcEEEEeecc
Q 024008 209 LITLMFPIS---------DHVGGP-----PYKVSVSDYEEVLQPMGFQAISIVDNK 250 (274)
Q Consensus 209 l~~~~~~~~---------~~~~~~-----~~~~~~~~~~~~~~~~Gf~~~~~~~~~ 250 (274)
++....... ....++ .+..+.+++.++++++||+++..+...
T Consensus 246 iIs~~p~~~~~~~l~~~g~~~~g~~~~~r~y~~s~eel~~lL~~AGf~v~~~~~~~ 301 (315)
T PLN02585 246 IISFAPKTLYYDILKRIGELFPGPSKATRAYLHAEADVERALKKAGWKVARREMTA 301 (315)
T ss_pred EEEeCCcchHHHHHHHHHhhcCCCCcCceeeeCCHHHHHHHHHHCCCEEEEEEEee
Confidence 443211110 001111 234589999999999999987665543
No 32
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=99.73 E-value=1.8e-16 Score=131.07 Aligned_cols=187 Identities=14% Similarity=0.144 Sum_probs=128.5
Q ss_pred HHHHHHhhcccccchhHhhhcCCCCccCC----CccH---HHHHHHhcC-CCCCCeEEEEcCCcchhHHHhhCCCCeEEE
Q 024008 64 NKLQQLMHIESSGGWEKCWEEGLTPWDIG----QPAP---IIVHLHQSG-ALPKGRALVPGCGTGYDVVAMASPERYVVG 135 (274)
Q Consensus 64 ~~~~~~~~~~~~~~w~~~~~~~~~~~~~~----~~~~---~~~~~~~~~-~~~~~~vLDiG~G~G~~~~~l~~~~~~v~~ 135 (274)
..+...+.+.....|...|.......... .... .+..++... ..++.+|||+|||+|..+..+++.+.+|++
T Consensus 11 ~~v~~~~~~~~~~~w~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vLDvGcG~G~~~~~l~~~~~~v~~ 90 (230)
T PRK07580 11 SEVRTYFNRTGFDRWARIYSDAPVSKVRATVRAGHQRMRDTVLSWLPADGDLTGLRILDAGCGVGSLSIPLARRGAKVVA 90 (230)
T ss_pred hhhhHHHhhhccchHHHhhCcCchhHHHHHhcchHHHHHHHHHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHcCCEEEE
Confidence 34445555555678988887643321100 0111 222333321 235679999999999999999988889999
Q ss_pred EeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCeeEEEecccccccChhHHHHHHHHHHhcccCCcEEEEEEcc
Q 024008 136 LEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFP 215 (274)
Q Consensus 136 iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~~ 215 (274)
+|+++.++..|+++....+..+++.+..+|+.. ..+.||+|++..++++++.+....++..+.+.+++++.+.+....
T Consensus 91 ~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~--~~~~fD~v~~~~~l~~~~~~~~~~~l~~l~~~~~~~~~i~~~~~~ 168 (230)
T PRK07580 91 SDISPQMVEEARERAPEAGLAGNITFEVGDLES--LLGRFDTVVCLDVLIHYPQEDAARMLAHLASLTRGSLIFTFAPYT 168 (230)
T ss_pred EECCHHHHHHHHHHHHhcCCccCcEEEEcCchh--ccCCcCEEEEcchhhcCCHHHHHHHHHHHHhhcCCeEEEEECCcc
Confidence 999999999999998776655679999999532 347899999999998888777788889998877544443322111
Q ss_pred CC-------------CCCCCCCcccCHHHHHHHHhcCCCcEEEEeecccc
Q 024008 216 IS-------------DHVGGPPYKVSVSDYEEVLQPMGFQAISIVDNKLA 252 (274)
Q Consensus 216 ~~-------------~~~~~~~~~~~~~~~~~~~~~~Gf~~~~~~~~~~~ 252 (274)
.. .........++..++.++++.+||+++.+......
T Consensus 169 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~ 218 (230)
T PRK07580 169 PLLALLHWIGGLFPGPSRTTRIYPHREKGIRRALAAAGFKVVRTERISSG 218 (230)
T ss_pred HHHHHHHHhccccCCccCCCCccccCHHHHHHHHHHCCCceEeeeeccch
Confidence 00 00111123457899999999999999998775533
No 33
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=99.73 E-value=1.2e-16 Score=128.29 Aligned_cols=137 Identities=16% Similarity=0.138 Sum_probs=113.2
Q ss_pred CCCCeEEEEcCCcchhHHHhhC--------CCCeEEEEeCChHHHHHHHHHhhcCCCCcc--eEEEEcccCC-CCCCCCe
Q 024008 107 LPKGRALVPGCGTGYDVVAMAS--------PERYVVGLEISDIAIKKAEELSSSLPNAKF--VSFLKADFFT-WCPTELF 175 (274)
Q Consensus 107 ~~~~~vLDiG~G~G~~~~~l~~--------~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~--v~~~~~d~~~-~~~~~~f 175 (274)
..+.++||++||||..+..+.+ .+.+|+++|+||++++.++++..+.++.++ +.|+.+|+.+ +++++.|
T Consensus 99 ~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dAE~LpFdd~s~ 178 (296)
T KOG1540|consen 99 GKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGDAEDLPFDDDSF 178 (296)
T ss_pred CCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeCCcccCCCCCCcc
Confidence 3458999999999999998877 136899999999999999999977666444 9999999999 7788999
Q ss_pred eEEEecccccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCC----------------C----------------C
Q 024008 176 DLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVG----------------G----------------P 223 (274)
Q Consensus 176 D~v~~~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~~~----------------~----------------~ 223 (274)
|.+....-+..++ +..+++++++|+|||||++.+.+|+...... | .
T Consensus 179 D~yTiafGIRN~t--h~~k~l~EAYRVLKpGGrf~cLeFskv~~~~l~~fy~~ysf~VlpvlG~~iagd~~sYqYLveSI 256 (296)
T KOG1540|consen 179 DAYTIAFGIRNVT--HIQKALREAYRVLKPGGRFSCLEFSKVENEPLKWFYDQYSFDVLPVLGEIIAGDRKSYQYLVESI 256 (296)
T ss_pred eeEEEecceecCC--CHHHHHHHHHHhcCCCcEEEEEEccccccHHHHHHHHhhhhhhhchhhHhhhhhHhhhhhHHhhh
Confidence 9999988888874 5578999999999999999999988765200 0 0
Q ss_pred CcccCHHHHHHHHhcCCCcEEE
Q 024008 224 PYKVSVSDYEEVLQPMGFQAIS 245 (274)
Q Consensus 224 ~~~~~~~~~~~~~~~~Gf~~~~ 245 (274)
.-+.+.+++..+.+++||..+.
T Consensus 257 ~rfp~qe~f~~miedaGF~~~~ 278 (296)
T KOG1540|consen 257 RRFPPQEEFASMIEDAGFSSVN 278 (296)
T ss_pred hcCCCHHHHHHHHHHcCCcccc
Confidence 1123789999999999998876
No 34
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=99.73 E-value=4.1e-17 Score=129.70 Aligned_cols=135 Identities=19% Similarity=0.235 Sum_probs=108.8
Q ss_pred CCCeEEEEcCCcchhHHHhhC--CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCeeEEEeccccc
Q 024008 108 PKGRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFC 185 (274)
Q Consensus 108 ~~~~vLDiG~G~G~~~~~l~~--~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~~~~ 185 (274)
++.+|||+|||+|..+..+++ ++.+|+++|+++.+++.|+++....+.. +++++.+|+.+....++||+|+++..
T Consensus 45 ~g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~l~-~i~~~~~d~~~~~~~~~fDlV~~~~~-- 121 (187)
T PRK00107 45 GGERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELGLK-NVTVVHGRAEEFGQEEKFDVVTSRAV-- 121 (187)
T ss_pred CCCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcCCC-CEEEEeccHhhCCCCCCccEEEEccc--
Confidence 368999999999999998875 6789999999999999999999888775 49999999988544678999998752
Q ss_pred ccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcEEEEeecccccCCccchhHH
Q 024008 186 AIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAISIVDNKLAIGPRKGREKL 262 (274)
Q Consensus 186 ~~~~~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gf~~~~~~~~~~~~~~~~~~~~~ 262 (274)
.....+++.+.++|+|||.+++..... ...++.++.+..|+.+..+...+. ++.++..++
T Consensus 122 ----~~~~~~l~~~~~~LkpGG~lv~~~~~~-----------~~~~l~~~~~~~~~~~~~~~~~~~--~~~~~~~~~ 181 (187)
T PRK00107 122 ----ASLSDLVELCLPLLKPGGRFLALKGRD-----------PEEEIAELPKALGGKVEEVIELTL--PGLDGERHL 181 (187)
T ss_pred ----cCHHHHHHHHHHhcCCCeEEEEEeCCC-----------hHHHHHHHHHhcCceEeeeEEEec--CCCCCcEEE
Confidence 234578899999999999999886332 467888888989999888777554 334444443
No 35
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=99.73 E-value=4.9e-17 Score=123.98 Aligned_cols=164 Identities=20% Similarity=0.288 Sum_probs=127.6
Q ss_pred cchhHhhhcCCC----------CccCCCccHHHHHHHhcC------CCCCCeEEEEcCCcchhHHHhhCCCC--eEEEEe
Q 024008 76 GGWEKCWEEGLT----------PWDIGQPAPIIVHLHQSG------ALPKGRALVPGCGTGYDVVAMASPER--YVVGLE 137 (274)
Q Consensus 76 ~~w~~~~~~~~~----------~~~~~~~~~~~~~~~~~~------~~~~~~vLDiG~G~G~~~~~l~~~~~--~v~~iD 137 (274)
.||++.|..... -|.-......+..++... .....+|||+|||.|.++..|++.|. ..+|+|
T Consensus 19 ~yWD~~Y~~El~Nfr~hgd~GEvWFg~~ae~riv~wl~d~~~~~rv~~~A~~VlDLGtGNG~~L~~L~~egf~~~L~GvD 98 (227)
T KOG1271|consen 19 SYWDAAYELELTNFREHGDEGEVWFGEDAEERIVDWLKDLIVISRVSKQADRVLDLGTGNGHLLFQLAKEGFQSKLTGVD 98 (227)
T ss_pred HHHHHHHHHHHhhcccCCCccceecCCcHHHHHHHHHHhhhhhhhhcccccceeeccCCchHHHHHHHHhcCCCCccccc
Confidence 678777766221 355444555566655432 12234999999999999999999776 599999
Q ss_pred CChHHHHHHHHHhhcCCCCcceEEEEcccCC-CCCCCCeeEEEecccccccC--h----hHHHHHHHHHHhcccCCcEEE
Q 024008 138 ISDIAIKKAEELSSSLPNAKFVSFLKADFFT-WCPTELFDLIFDYTFFCAIE--P----EMRAAWAQKIKDFLKPDGELI 210 (274)
Q Consensus 138 ~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~~~~~fD~v~~~~~~~~~~--~----~~~~~~l~~l~~~L~~gG~l~ 210 (274)
+|+.+++.|+..++..+.++.|+|.+.|+.. ....++||+|...+++..+. + ..+..++..+.+.|+|||+++
T Consensus 99 Ys~~AV~LA~niAe~~~~~n~I~f~q~DI~~~~~~~~qfdlvlDKGT~DAisLs~d~~~~r~~~Y~d~v~~ll~~~gifv 178 (227)
T KOG1271|consen 99 YSEKAVELAQNIAERDGFSNEIRFQQLDITDPDFLSGQFDLVLDKGTLDAISLSPDGPVGRLVVYLDSVEKLLSPGGIFV 178 (227)
T ss_pred cCHHHHHHHHHHHHhcCCCcceeEEEeeccCCcccccceeEEeecCceeeeecCCCCcccceeeehhhHhhccCCCcEEE
Confidence 9999999999999999988889999999998 45568999999998887752 1 223678899999999999999
Q ss_pred EEEccCCCCCCCCCcccCHHHHHHHHhcCCCcEEEEeecc
Q 024008 211 TLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAISIVDNK 250 (274)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gf~~~~~~~~~ 250 (274)
|..++ +|.+|+.+.++..||........+
T Consensus 179 ItSCN-----------~T~dELv~~f~~~~f~~~~tvp~p 207 (227)
T KOG1271|consen 179 ITSCN-----------FTKDELVEEFENFNFEYLSTVPTP 207 (227)
T ss_pred EEecC-----------ccHHHHHHHHhcCCeEEEEeeccc
Confidence 97643 389999999999888776655543
No 36
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=99.73 E-value=3.9e-17 Score=115.67 Aligned_cols=93 Identities=31% Similarity=0.422 Sum_probs=80.8
Q ss_pred EEEcCCcchhHHHhhCC-CCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC-CCCCCCeeEEEecccccccChh
Q 024008 113 LVPGCGTGYDVVAMASP-ERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT-WCPTELFDLIFDYTFFCAIEPE 190 (274)
Q Consensus 113 LDiG~G~G~~~~~l~~~-~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~~~~~fD~v~~~~~~~~~~~~ 190 (274)
||+|||+|..+..+++. +.+++++|+++++++.++++.... ++.+..+|+.. +.++++||+|++..+++++ +
T Consensus 1 LdiG~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~~~~~~~~~----~~~~~~~d~~~l~~~~~sfD~v~~~~~~~~~--~ 74 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKRGGASVTGIDISEEMLEQARKRLKNE----GVSFRQGDAEDLPFPDNSFDVVFSNSVLHHL--E 74 (95)
T ss_dssp EEET-TTSHHHHHHHHTTTCEEEEEES-HHHHHHHHHHTTTS----TEEEEESBTTSSSS-TT-EEEEEEESHGGGS--S
T ss_pred CEecCcCCHHHHHHHhccCCEEEEEeCCHHHHHHHHhccccc----CchheeehHHhCccccccccccccccceeec--c
Confidence 89999999999999997 889999999999999999998654 36699999988 5677999999999999999 5
Q ss_pred HHHHHHHHHHhcccCCcEEEE
Q 024008 191 MRAAWAQKIKDFLKPDGELIT 211 (274)
Q Consensus 191 ~~~~~l~~l~~~L~~gG~l~~ 211 (274)
+...+++++.++|||||++++
T Consensus 75 ~~~~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 75 DPEAALREIYRVLKPGGRLVI 95 (95)
T ss_dssp HHHHHHHHHHHHEEEEEEEEE
T ss_pred CHHHHHHHHHHHcCcCeEEeC
Confidence 678999999999999999875
No 37
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=99.73 E-value=2.1e-16 Score=136.06 Aligned_cols=136 Identities=19% Similarity=0.236 Sum_probs=110.5
Q ss_pred CCCeEEEEcCCcchhHHHhhC--CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCeeEEEeccccc
Q 024008 108 PKGRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFC 185 (274)
Q Consensus 108 ~~~~vLDiG~G~G~~~~~l~~--~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~~~~ 185 (274)
+..+|||+|||+|..+..+++ ++.+++++|. +.+++.+++++...++.++++++.+|+++...+ .+|+|+...+++
T Consensus 149 ~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~-~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~~~~-~~D~v~~~~~lh 226 (306)
T TIGR02716 149 GVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKESYP-EADAVLFCRILY 226 (306)
T ss_pred CCCEEEEeCCchhHHHHHHHHHCCCCEEEEEec-HHHHHHHHHHHHhCCccceEEEEecCccCCCCC-CCCEEEeEhhhh
Confidence 447999999999999998887 5679999997 789999999998888888999999999863322 379999999999
Q ss_pred ccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCC------------------cccCHHHHHHHHhcCCCcEEEE
Q 024008 186 AIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPP------------------YKVSVSDYEEVLQPMGFQAISI 246 (274)
Q Consensus 186 ~~~~~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~Gf~~~~~ 246 (274)
+++++....+++++++.|+|||++++.++...+.. .+. -..+.+++.++++++||+.+.+
T Consensus 227 ~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~ll~~aGf~~v~~ 304 (306)
T TIGR02716 227 SANEQLSTIMCKKAFDAMRSGGRLLILDMVIDDPE-NPNFDYLSHYILGAGMPFSVLGFKEQARYKEILESLGYKDVTM 304 (306)
T ss_pred cCChHHHHHHHHHHHHhcCCCCEEEEEEeccCCCC-CchhhHHHHHHHHcccccccccCCCHHHHHHHHHHcCCCeeEe
Confidence 88877778899999999999999999886443321 110 0123688999999999987754
No 38
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=99.72 E-value=7.8e-17 Score=125.90 Aligned_cols=159 Identities=21% Similarity=0.213 Sum_probs=110.8
Q ss_pred CCCCccCCC-ccHH--HHHHHh-cCCCCC-CeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcce
Q 024008 85 GLTPWDIGQ-PAPI--IVHLHQ-SGALPK-GRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFV 159 (274)
Q Consensus 85 ~~~~~~~~~-~~~~--~~~~~~-~~~~~~-~~vLDiG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v 159 (274)
+..||.... +.+. ....+. .+..+. .++||+|||.|.++..|+...-+++++|+++.+++.|+++.... ++|
T Consensus 15 ~~DPW~~~~~~YE~~K~~~~l~aaLp~~ry~~alEvGCs~G~lT~~LA~rCd~LlavDis~~Al~~Ar~Rl~~~---~~V 91 (201)
T PF05401_consen 15 NDDPWGFETSWYERRKYRATLLAALPRRRYRRALEVGCSIGVLTERLAPRCDRLLAVDISPRALARARERLAGL---PHV 91 (201)
T ss_dssp SSSGGGTTT-HHHHHHHHHHHHHHHTTSSEEEEEEE--TTSHHHHHHGGGEEEEEEEES-HHHHHHHHHHTTT----SSE
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHhcCccccceeEecCCCccHHHHHHHHhhCceEEEeCCHHHHHHHHHhcCCC---CCe
Confidence 456777643 3332 223332 122333 69999999999999999998889999999999999999999765 579
Q ss_pred EEEEcccCCCCCCCCeeEEEecccccccCh-hHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhc
Q 024008 160 SFLKADFFTWCPTELFDLIFDYTFFCAIEP-EMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQP 238 (274)
Q Consensus 160 ~~~~~d~~~~~~~~~fD~v~~~~~~~~~~~-~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (274)
+|++.|+.+..|.++||+|+++.+++++++ +++..++.++...|+|||.+++..+... .-.+..+.+..+.+.++|.+
T Consensus 92 ~~~~~dvp~~~P~~~FDLIV~SEVlYYL~~~~~L~~~l~~l~~~L~pgG~LV~g~~rd~-~c~~wgh~~ga~tv~~~~~~ 170 (201)
T PF05401_consen 92 EWIQADVPEFWPEGRFDLIVLSEVLYYLDDAEDLRAALDRLVAALAPGGHLVFGHARDA-NCRRWGHAAGAETVLEMLQE 170 (201)
T ss_dssp EEEES-TTT---SS-EEEEEEES-GGGSSSHHHHHHHHHHHHHTEEEEEEEEEEEE-HH-HHHHTT-S--HHHHHHHHHH
T ss_pred EEEECcCCCCCCCCCeeEEEEehHhHcCCCHHHHHHHHHHHHHHhCCCCEEEEEEecCC-cccccCcccchHHHHHHHHH
Confidence 999999999888999999999999999975 6788999999999999999999876431 11111233468888899988
Q ss_pred CCCcEEEEee
Q 024008 239 MGFQAISIVD 248 (274)
Q Consensus 239 ~Gf~~~~~~~ 248 (274)
. +..++..+
T Consensus 171 ~-~~~~~~~~ 179 (201)
T PF05401_consen 171 H-LTEVERVE 179 (201)
T ss_dssp H-SEEEEEEE
T ss_pred H-hhheeEEE
Confidence 4 55444443
No 39
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=99.72 E-value=7.6e-17 Score=124.74 Aligned_cols=105 Identities=26% Similarity=0.367 Sum_probs=91.0
Q ss_pred CCCeEEEEcCCcchhHHHhhC---CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCC--CCCeeEEEecc
Q 024008 108 PKGRALVPGCGTGYDVVAMAS---PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP--TELFDLIFDYT 182 (274)
Q Consensus 108 ~~~~vLDiG~G~G~~~~~l~~---~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~--~~~fD~v~~~~ 182 (274)
++.+|||+|||+|..+..+++ ++.+++|+|+++++++.|++++...+.. +++|+++|+.+... .++||+|++..
T Consensus 3 ~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~-ni~~~~~d~~~l~~~~~~~~D~I~~~~ 81 (152)
T PF13847_consen 3 SNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLD-NIEFIQGDIEDLPQELEEKFDIIISNG 81 (152)
T ss_dssp TTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTST-TEEEEESBTTCGCGCSSTTEEEEEEES
T ss_pred CCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhccccccccc-ccceEEeehhccccccCCCeeEEEEcC
Confidence 457999999999999999993 5789999999999999999998887765 89999999998432 27999999999
Q ss_pred cccccChhHHHHHHHHHHhcccCCcEEEEEEcc
Q 024008 183 FFCAIEPEMRAAWAQKIKDFLKPDGELITLMFP 215 (274)
Q Consensus 183 ~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~~ 215 (274)
+++++. ....+++++.++|++||.+++..+.
T Consensus 82 ~l~~~~--~~~~~l~~~~~~lk~~G~~i~~~~~ 112 (152)
T PF13847_consen 82 VLHHFP--DPEKVLKNIIRLLKPGGILIISDPN 112 (152)
T ss_dssp TGGGTS--HHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred chhhcc--CHHHHHHHHHHHcCCCcEEEEEECC
Confidence 998885 4467899999999999999988865
No 40
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=99.72 E-value=5.2e-16 Score=123.34 Aligned_cols=135 Identities=18% Similarity=0.272 Sum_probs=110.5
Q ss_pred CCCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCeeEEEecccccc
Q 024008 107 LPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFCA 186 (274)
Q Consensus 107 ~~~~~vLDiG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~~~~~ 186 (274)
.++.+|||+|||+|..+..++..+.+++++|+++.+++.++++....+. +++++.+|+.+.. .++||+|+++.++++
T Consensus 18 ~~~~~vLdlG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~-~~~fD~Vi~n~p~~~ 94 (179)
T TIGR00537 18 LKPDDVLEIGAGTGLVAIRLKGKGKCILTTDINPFAVKELRENAKLNNV--GLDVVMTDLFKGV-RGKFDVILFNPPYLP 94 (179)
T ss_pred cCCCeEEEeCCChhHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHHcCC--ceEEEEccccccc-CCcccEEEECCCCCC
Confidence 4557899999999999999998777999999999999999999876653 5889999987744 358999999988876
Q ss_pred cChh-------------------HHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcEEEEe
Q 024008 187 IEPE-------------------MRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAISIV 247 (274)
Q Consensus 187 ~~~~-------------------~~~~~l~~l~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gf~~~~~~ 247 (274)
.++. ....+++++.++|+|||.+++...... ...++.+.++++||....+.
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~~~----------~~~~~~~~l~~~gf~~~~~~ 164 (179)
T TIGR00537 95 LEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSSLN----------GEPDTFDKLDERGFRYEIVA 164 (179)
T ss_pred CcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEeccC----------ChHHHHHHHHhCCCeEEEEE
Confidence 5421 146789999999999999988774331 36789999999999999888
Q ss_pred ecccccC
Q 024008 248 DNKLAIG 254 (274)
Q Consensus 248 ~~~~~~~ 254 (274)
.....+.
T Consensus 165 ~~~~~~~ 171 (179)
T TIGR00537 165 ERGLFFE 171 (179)
T ss_pred EeecCce
Confidence 8665543
No 41
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=99.72 E-value=1.5e-17 Score=134.24 Aligned_cols=136 Identities=19% Similarity=0.222 Sum_probs=109.2
Q ss_pred CCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCc-----ceEEEEcccCCCCCCCCeeEEEeccc
Q 024008 109 KGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAK-----FVSFLKADFFTWCPTELFDLIFDYTF 183 (274)
Q Consensus 109 ~~~vLDiG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~-----~v~~~~~d~~~~~~~~~fD~v~~~~~ 183 (274)
+++|||+|||+|.++..|++.|+.|+|||+++.+++.|++.....+..+ ++++...|+.... ++||.|+|+.+
T Consensus 90 g~~ilDvGCGgGLLSepLArlga~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~~--~~fDaVvcsev 167 (282)
T KOG1270|consen 90 GMKILDVGCGGGLLSEPLARLGAQVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGLT--GKFDAVVCSEV 167 (282)
T ss_pred CceEEEeccCccccchhhHhhCCeeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhcc--cccceeeeHHH
Confidence 3689999999999999999999999999999999999999965544322 3677777776544 34999999999
Q ss_pred ccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCC----------------CCC---CCcccCHHHHHHHHhcCCCcEE
Q 024008 184 FCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDH----------------VGG---PPYKVSVSDYEEVLQPMGFQAI 244 (274)
Q Consensus 184 ~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~----------------~~~---~~~~~~~~~~~~~~~~~Gf~~~ 244 (274)
++|+ .+...++..+.+.|+|||.+++........ ..| ..-+.+++++..+++.+++++.
T Consensus 168 leHV--~dp~~~l~~l~~~lkP~G~lfittinrt~lS~~~~i~~~E~vl~ivp~Gth~~ekfi~p~e~~~~l~~~~~~v~ 245 (282)
T KOG1270|consen 168 LEHV--KDPQEFLNCLSALLKPNGRLFITTINRTILSFAGTIFLAEIVLRIVPKGTHTWEKFINPEELTSILNANGAQVN 245 (282)
T ss_pred HHHH--hCHHHHHHHHHHHhCCCCceEeeehhhhHHHhhccccHHHHHHHhcCCCCcCHHHcCCHHHHHHHHHhcCcchh
Confidence 9998 456789999999999999999977544311 111 1223689999999999999887
Q ss_pred EEee
Q 024008 245 SIVD 248 (274)
Q Consensus 245 ~~~~ 248 (274)
.+..
T Consensus 246 ~v~G 249 (282)
T KOG1270|consen 246 DVVG 249 (282)
T ss_pred hhhc
Confidence 7765
No 42
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=99.72 E-value=3.7e-16 Score=131.42 Aligned_cols=159 Identities=19% Similarity=0.300 Sum_probs=115.8
Q ss_pred HHHhcCC-CCCCeEEEEcCCcchhHHHhhC--CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCee
Q 024008 100 HLHQSGA-LPKGRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFD 176 (274)
Q Consensus 100 ~~~~~~~-~~~~~vLDiG~G~G~~~~~l~~--~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~fD 176 (274)
.++.... .++.+|||+|||+|..+..+++ ++.+|+|+|+++.+++.|+++. .+++++.+|+....+.++||
T Consensus 22 ~ll~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~------~~~~~~~~d~~~~~~~~~fD 95 (258)
T PRK01683 22 DLLARVPLENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRL------PDCQFVEADIASWQPPQALD 95 (258)
T ss_pred HHHhhCCCcCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhC------CCCeEEECchhccCCCCCcc
Confidence 3444333 3457999999999999998887 4679999999999999999875 35889999998766667999
Q ss_pred EEEecccccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCC--------------------CCC--CCcccCHHHHHH
Q 024008 177 LIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDH--------------------VGG--PPYKVSVSDYEE 234 (274)
Q Consensus 177 ~v~~~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~--------------------~~~--~~~~~~~~~~~~ 234 (274)
+|+++.+++++++ ...++.++.++|+|||.+++........ ..+ .....+..++.+
T Consensus 96 ~v~~~~~l~~~~d--~~~~l~~~~~~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~ 173 (258)
T PRK01683 96 LIFANASLQWLPD--HLELFPRLVSLLAPGGVLAVQMPDNLDEPSHVLMREVAENGPWEQNLPDRGARRAPLPPPHAYYD 173 (258)
T ss_pred EEEEccChhhCCC--HHHHHHHHHHhcCCCcEEEEECCCCCCCHHHHHHHHHHccCchHHHhccccccCcCCCCHHHHHH
Confidence 9999999998853 4678999999999999998864321110 000 122346778899
Q ss_pred HHhcCCCcEEEEeecccccCCccchhHHHHhhhh
Q 024008 235 VLQPMGFQAISIVDNKLAIGPRKGREKLGRWKRS 268 (274)
Q Consensus 235 ~~~~~Gf~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (274)
++..+|+.+ .+...... .+..+.+.+..|.+.
T Consensus 174 ~l~~~g~~v-~~~~~~~~-~~~~~~~~~~~~~~~ 205 (258)
T PRK01683 174 ALAPAACRV-DIWHTTYY-HPMPSAQAIVEWVKG 205 (258)
T ss_pred HHHhCCCce-eeeeeeee-eecCCchhhhhhhhh
Confidence 999999874 44333332 233345556666654
No 43
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=99.71 E-value=5.7e-16 Score=129.73 Aligned_cols=128 Identities=16% Similarity=0.150 Sum_probs=103.3
Q ss_pred CCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC-CCCCCCeeEEEecccccc
Q 024008 108 PKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT-WCPTELFDLIFDYTFFCA 186 (274)
Q Consensus 108 ~~~~vLDiG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~~~~~fD~v~~~~~~~~ 186 (274)
+..+|||+|||+|..+..++..+.+++++|+|+.+++.++++.. .+.++.+|+.. +.++++||+|+++.++++
T Consensus 42 ~~~~vLDiGcG~G~~~~~l~~~~~~v~~~D~s~~~l~~a~~~~~------~~~~~~~d~~~~~~~~~~fD~V~s~~~l~~ 115 (251)
T PRK10258 42 KFTHVLDAGCGPGWMSRYWRERGSQVTALDLSPPMLAQARQKDA------ADHYLAGDIESLPLATATFDLAWSNLAVQW 115 (251)
T ss_pred CCCeEEEeeCCCCHHHHHHHHcCCeEEEEECCHHHHHHHHhhCC------CCCEEEcCcccCcCCCCcEEEEEECchhhh
Confidence 45799999999999999998888999999999999999998753 25688899877 445678999999999988
Q ss_pred cChhHHHHHHHHHHhcccCCcEEEEEEccCCCC------------CCCCCcccCHHHHHHHHhcCCCcE
Q 024008 187 IEPEMRAAWAQKIKDFLKPDGELITLMFPISDH------------VGGPPYKVSVSDYEEVLQPMGFQA 243 (274)
Q Consensus 187 ~~~~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~Gf~~ 243 (274)
++ +...++.++.++|+|||.+++..+..... ......+.+.+++.+++...|+..
T Consensus 116 ~~--d~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~el~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~ 182 (251)
T PRK10258 116 CG--NLSTALRELYRVVRPGGVVAFTTLVQGSLPELHQAWQAVDERPHANRFLPPDAIEQALNGWRYQH 182 (251)
T ss_pred cC--CHHHHHHHHHHHcCCCeEEEEEeCCCCchHHHHHHHHHhccCCccccCCCHHHHHHHHHhCCcee
Confidence 74 44688999999999999999987665321 111123458999999999888753
No 44
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=99.71 E-value=3.2e-16 Score=124.32 Aligned_cols=128 Identities=17% Similarity=0.214 Sum_probs=100.7
Q ss_pred CCCCeEEEEcCCcchhHHHhhC--CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCeeEEEecccc
Q 024008 107 LPKGRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFF 184 (274)
Q Consensus 107 ~~~~~vLDiG~G~G~~~~~l~~--~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~~~ 184 (274)
.++.+|||+|||+|..+..++. ++.+|+++|.++.+++.++++....+. ++++++.+|+.+....++||+|++.. +
T Consensus 41 ~~~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~~-~~i~~i~~d~~~~~~~~~fD~I~s~~-~ 118 (181)
T TIGR00138 41 LDGKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELGL-NNVEIVNGRAEDFQHEEQFDVITSRA-L 118 (181)
T ss_pred cCCCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhCC-CCeEEEecchhhccccCCccEEEehh-h
Confidence 3478999999999999988775 456899999999999999999887765 36999999998765567999999876 3
Q ss_pred cccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhc---CCCcEEEEeecccc
Q 024008 185 CAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQP---MGFQAISIVDNKLA 252 (274)
Q Consensus 185 ~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~Gf~~~~~~~~~~~ 252 (274)
++ ...+++.+.++|+|||.+++..... ...++..+.+. .||+.++..+...+
T Consensus 119 ~~-----~~~~~~~~~~~LkpgG~lvi~~~~~-----------~~~~~~~~~e~~~~~~~~~~~~~~~~~~ 173 (181)
T TIGR00138 119 AS-----LNVLLELTLNLLKVGGYFLAYKGKK-----------YLDEIEEAKRKCQVLGVEPLEVPPLTGP 173 (181)
T ss_pred hC-----HHHHHHHHHHhcCCCCEEEEEcCCC-----------cHHHHHHHHHhhhhcCceEeeccccCCC
Confidence 33 3457788899999999999875211 34455555444 79999988887766
No 45
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=99.70 E-value=5e-16 Score=131.62 Aligned_cols=140 Identities=19% Similarity=0.229 Sum_probs=109.9
Q ss_pred CCCCeEEEEcCCcchhHHHhhC---CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC-CCCCCCeeEEEecc
Q 024008 107 LPKGRALVPGCGTGYDVVAMAS---PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT-WCPTELFDLIFDYT 182 (274)
Q Consensus 107 ~~~~~vLDiG~G~G~~~~~l~~---~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~~~~~fD~v~~~~ 182 (274)
.++.+|||+|||+|..+..+++ ...+|+++|+++.+++.|+++....+. ++++++.+|+.. ..+++.||+|+++.
T Consensus 76 ~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~-~~v~~~~~d~~~l~~~~~~fD~Vi~~~ 154 (272)
T PRK11873 76 KPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGY-TNVEFRLGEIEALPVADNSVDVIISNC 154 (272)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCC-CCEEEEEcchhhCCCCCCceeEEEEcC
Confidence 3568999999999998876665 335899999999999999999877665 478999999987 34567899999999
Q ss_pred cccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCC------------CCCcccCHHHHHHHHhcCCCcEEEEeec
Q 024008 183 FFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVG------------GPPYKVSVSDYEEVLQPMGFQAISIVDN 249 (274)
Q Consensus 183 ~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~Gf~~~~~~~~ 249 (274)
++++.+ ....+++++.++|+|||++++..+....... ......+..++.++++++||..+.+...
T Consensus 155 v~~~~~--d~~~~l~~~~r~LkpGG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~aGf~~v~i~~~ 231 (272)
T PRK11873 155 VINLSP--DKERVFKEAFRVLKPGGRFAISDVVLRGELPEEIRNDAELYAGCVAGALQEEEYLAMLAEAGFVDITIQPK 231 (272)
T ss_pred cccCCC--CHHHHHHHHHHHcCCCcEEEEEEeeccCCCCHHHHHhHHHHhccccCCCCHHHHHHHHHHCCCCceEEEec
Confidence 998774 3357899999999999999997654322110 0011247889999999999999887654
No 46
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=99.70 E-value=4.4e-16 Score=129.35 Aligned_cols=144 Identities=23% Similarity=0.279 Sum_probs=107.0
Q ss_pred CCCCCeEEEEcCCcchhHHHhhCCCC-eEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCeeEEEecccc
Q 024008 106 ALPKGRALVPGCGTGYDVVAMASPER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFF 184 (274)
Q Consensus 106 ~~~~~~vLDiG~G~G~~~~~l~~~~~-~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~~~ 184 (274)
.+.+++|||||||.|+.+..++..|+ .|+|+|.++......+-...-.+....+.++...+......+.||+|++.+|+
T Consensus 113 ~L~gk~VLDIGC~nGY~~frM~~~GA~~ViGiDP~~lf~~QF~~i~~~lg~~~~~~~lplgvE~Lp~~~~FDtVF~MGVL 192 (315)
T PF08003_consen 113 DLKGKRVLDIGCNNGYYSFRMLGRGAKSVIGIDPSPLFYLQFEAIKHFLGQDPPVFELPLGVEDLPNLGAFDTVFSMGVL 192 (315)
T ss_pred CcCCCEEEEecCCCcHHHHHHhhcCCCEEEEECCChHHHHHHHHHHHHhCCCccEEEcCcchhhccccCCcCEEEEeeeh
Confidence 67889999999999999999999888 69999999877766433322222223344443444444446889999999999
Q ss_pred cccChhHHHHHHHHHHhcccCCcEEEEEEccCCCC-------------CCCCCcccCHHHHHHHHhcCCCcEEEEeeccc
Q 024008 185 CAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDH-------------VGGPPYKVSVSDYEEVLQPMGFQAISIVDNKL 251 (274)
Q Consensus 185 ~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~Gf~~~~~~~~~~ 251 (274)
.|...+ -..+.+++..|++||.+++........ ..+..|..+..-+..+++.+||..+++.+...
T Consensus 193 YHrr~P--l~~L~~Lk~~L~~gGeLvLETlvi~g~~~~~L~P~~rYa~m~nv~FiPs~~~L~~wl~r~gF~~v~~v~~~~ 270 (315)
T PF08003_consen 193 YHRRSP--LDHLKQLKDSLRPGGELVLETLVIDGDENTVLVPEDRYAKMRNVWFIPSVAALKNWLERAGFKDVRCVDVSP 270 (315)
T ss_pred hccCCH--HHHHHHHHHhhCCCCEEEEEEeeecCCCceEEccCCcccCCCceEEeCCHHHHHHHHHHcCCceEEEecCcc
Confidence 998433 467899999999999999866543322 12233446899999999999999999887553
No 47
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=99.69 E-value=4.5e-16 Score=133.99 Aligned_cols=137 Identities=15% Similarity=0.101 Sum_probs=107.5
Q ss_pred CCCeEEEEcCCcchhHHHhhC--CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC-CCCCCCeeEEEecccc
Q 024008 108 PKGRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT-WCPTELFDLIFDYTFF 184 (274)
Q Consensus 108 ~~~~vLDiG~G~G~~~~~l~~--~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~~~~~fD~v~~~~~~ 184 (274)
++.+|||+|||+|..+..+++ .+.+++++|+++++++.|+++... .+++++.+|+.+ ..+++.||+|+++.++
T Consensus 113 ~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~~----~~i~~i~gD~e~lp~~~~sFDvVIs~~~L 188 (340)
T PLN02490 113 RNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL----KECKIIEGDAEDLPFPTDYADRYVSAGSI 188 (340)
T ss_pred CCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhhc----cCCeEEeccHHhCCCCCCceeEEEEcChh
Confidence 457999999999999888876 457999999999999999987642 358899999987 4456789999999999
Q ss_pred cccChhHHHHHHHHHHhcccCCcEEEEEEccCCCC-CC----C-CCcccCHHHHHHHHhcCCCcEEEEeecc
Q 024008 185 CAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDH-VG----G-PPYKVSVSDYEEVLQPMGFQAISIVDNK 250 (274)
Q Consensus 185 ~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~-~~----~-~~~~~~~~~~~~~~~~~Gf~~~~~~~~~ 250 (274)
+++++. ..+++++.++|+|||.+++........ .. . .....+.+++.++++++||+.+++....
T Consensus 189 ~~~~d~--~~~L~e~~rvLkPGG~LvIi~~~~p~~~~~r~~~~~~~~~~t~eEl~~lL~~aGF~~V~i~~i~ 258 (340)
T PLN02490 189 EYWPDP--QRGIKEAYRVLKIGGKACLIGPVHPTFWLSRFFADVWMLFPKEEEYIEWFTKAGFKDVKLKRIG 258 (340)
T ss_pred hhCCCH--HHHHHHHHHhcCCCcEEEEEEecCcchhHHHHhhhhhccCCCHHHHHHHHHHCCCeEEEEEEcC
Confidence 988643 568999999999999988765322110 00 0 0112478999999999999999887643
No 48
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=99.69 E-value=1.9e-15 Score=133.19 Aligned_cols=149 Identities=23% Similarity=0.214 Sum_probs=114.4
Q ss_pred CCCCeEEEEcCCcchhHHHhhC-CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCeeEEEeccccc
Q 024008 107 LPKGRALVPGCGTGYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFC 185 (274)
Q Consensus 107 ~~~~~vLDiG~G~G~~~~~l~~-~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~~~~ 185 (274)
.++.+|||||||+|..+..+++ .+.+|+|+|+|+++++.|+++.... .+++...|+... +++||.|++..+++
T Consensus 166 ~~g~rVLDIGcG~G~~a~~la~~~g~~V~giDlS~~~l~~A~~~~~~l----~v~~~~~D~~~l--~~~fD~Ivs~~~~e 239 (383)
T PRK11705 166 KPGMRVLDIGCGWGGLARYAAEHYGVSVVGVTISAEQQKLAQERCAGL----PVEIRLQDYRDL--NGQFDRIVSVGMFE 239 (383)
T ss_pred CCCCEEEEeCCCccHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhccC----eEEEEECchhhc--CCCCCEEEEeCchh
Confidence 4567999999999999998887 5789999999999999999988432 478888887654 46899999999999
Q ss_pred ccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCC-C----------CcccCHHHHHHHHhcCCCcEEEEeecccccC
Q 024008 186 AIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGG-P----------PYKVSVSDYEEVLQPMGFQAISIVDNKLAIG 254 (274)
Q Consensus 186 ~~~~~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~~~~-~----------~~~~~~~~~~~~~~~~Gf~~~~~~~~~~~~~ 254 (274)
|+.......+++++.++|+|||++++..+........ . .+..+.+++.+.++ .||.+.++......+
T Consensus 240 hvg~~~~~~~l~~i~r~LkpGG~lvl~~i~~~~~~~~~~~~i~~yifp~g~lps~~~i~~~~~-~~~~v~d~~~~~~hy- 317 (383)
T PRK11705 240 HVGPKNYRTYFEVVRRCLKPDGLFLLHTIGSNKTDTNVDPWINKYIFPNGCLPSVRQIAQASE-GLFVMEDWHNFGADY- 317 (383)
T ss_pred hCChHHHHHHHHHHHHHcCCCcEEEEEEccCCCCCCCCCCCceeeecCCCcCCCHHHHHHHHH-CCcEEEEEecChhhH-
Confidence 9977777889999999999999999977654322111 0 11236788888766 489988876644333
Q ss_pred CccchhHHHHhhh
Q 024008 255 PRKGREKLGRWKR 267 (274)
Q Consensus 255 ~~~~~~~~~~~~~ 267 (274)
.+++..|.+
T Consensus 318 ----~~TL~~W~~ 326 (383)
T PRK11705 318 ----DRTLMAWHE 326 (383)
T ss_pred ----HHHHHHHHH
Confidence 356666644
No 49
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=99.68 E-value=7.6e-16 Score=120.80 Aligned_cols=164 Identities=22% Similarity=0.293 Sum_probs=124.6
Q ss_pred HHHhcC-CCCCCeEEEEcCCcchhHHHhhC--CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCee
Q 024008 100 HLHQSG-ALPKGRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFD 176 (274)
Q Consensus 100 ~~~~~~-~~~~~~vLDiG~G~G~~~~~l~~--~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~fD 176 (274)
+++... .....+|.|+|||+|..+..|++ +++.++|+|-|++|++.|+++. ++++|..+|+..+.+...+|
T Consensus 21 dLla~Vp~~~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~rl------p~~~f~~aDl~~w~p~~~~d 94 (257)
T COG4106 21 DLLARVPLERPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQRL------PDATFEEADLRTWKPEQPTD 94 (257)
T ss_pred HHHhhCCccccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHhC------CCCceecccHhhcCCCCccc
Confidence 344443 34458999999999999999988 8899999999999999999887 67999999999999889999
Q ss_pred EEEecccccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCC------------------CC----CCcccCHHHHHH
Q 024008 177 LIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHV------------------GG----PPYKVSVSDYEE 234 (274)
Q Consensus 177 ~v~~~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~~------------------~~----~~~~~~~~~~~~ 234 (274)
+++++.+|+++++. ..++.++...|.|||.+-+-.....+.. .+ ..-..+...+-+
T Consensus 95 llfaNAvlqWlpdH--~~ll~rL~~~L~Pgg~LAVQmPdN~depsH~~mr~~A~~~p~~~~l~~~~~~r~~v~s~a~Yy~ 172 (257)
T COG4106 95 LLFANAVLQWLPDH--PELLPRLVSQLAPGGVLAVQMPDNLDEPSHRLMRETADEAPFAQELGGRGLTRAPLPSPAAYYE 172 (257)
T ss_pred hhhhhhhhhhcccc--HHHHHHHHHhhCCCceEEEECCCccCchhHHHHHHHHhcCchhhhhCccccccCCCCCHHHHHH
Confidence 99999999999632 5788999999999999988664332220 01 011247778888
Q ss_pred HHhcCCCcEEEEeecccccCCccchhHHHHhhhhhcccC
Q 024008 235 VLQPMGFQAISIVDNKLAIGPRKGREKLGRWKRSVRHSL 273 (274)
Q Consensus 235 ~~~~~Gf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (274)
++...+-++--.+. ....+.++.+.|.-|.+.....|
T Consensus 173 lLa~~~~rvDiW~T--~Y~h~l~~a~aIvdWvkgTgLrP 209 (257)
T COG4106 173 LLAPLACRVDIWHT--TYYHQLPGADAIVDWVKGTGLRP 209 (257)
T ss_pred HhCcccceeeeeee--eccccCCCccchhhheeccccce
Confidence 88887665433333 34555567788888877665444
No 50
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=99.67 E-value=1.8e-16 Score=113.98 Aligned_cols=94 Identities=30% Similarity=0.357 Sum_probs=79.5
Q ss_pred EEEEcCCcchhHHHhhCC---C--CeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC-CCCCCCeeEEEec-ccc
Q 024008 112 ALVPGCGTGYDVVAMASP---E--RYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT-WCPTELFDLIFDY-TFF 184 (274)
Q Consensus 112 vLDiG~G~G~~~~~l~~~---~--~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~~~~~fD~v~~~-~~~ 184 (274)
|||+|||+|..+..+++. + .+++++|+++++++.++++....+. +++++++|+.+ ....++||+|++. .++
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~--~~~~~~~D~~~l~~~~~~~D~v~~~~~~~ 78 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGP--KVRFVQADARDLPFSDGKFDLVVCSGLSL 78 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTT--TSEEEESCTTCHHHHSSSEEEEEE-TTGG
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCC--ceEEEECCHhHCcccCCCeeEEEEcCCcc
Confidence 799999999999988863 3 7999999999999999999977553 69999999988 3345799999995 559
Q ss_pred cccChhHHHHHHHHHHhcccCCc
Q 024008 185 CAIEPEMRAAWAQKIKDFLKPDG 207 (274)
Q Consensus 185 ~~~~~~~~~~~l~~l~~~L~~gG 207 (274)
+|++++....+++++.++|+|||
T Consensus 79 ~~~~~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 79 HHLSPEELEALLRRIARLLRPGG 101 (101)
T ss_dssp GGSSHHHHHHHHHHHHHTEEEEE
T ss_pred CCCCHHHHHHHHHHHHHHhCCCC
Confidence 99999999999999999999998
No 51
>PRK14968 putative methyltransferase; Provisional
Probab=99.67 E-value=4.6e-15 Score=118.70 Aligned_cols=136 Identities=23% Similarity=0.356 Sum_probs=108.4
Q ss_pred CCCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcc-eEEEEcccCCCCCCCCeeEEEeccccc
Q 024008 107 LPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKF-VSFLKADFFTWCPTELFDLIFDYTFFC 185 (274)
Q Consensus 107 ~~~~~vLDiG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~-v~~~~~d~~~~~~~~~fD~v~~~~~~~ 185 (274)
.++.+|||+|||+|..+..++..+.+++++|+++++++.+++++...+..++ +.++.+|+.+..+.++||+|+++..+.
T Consensus 22 ~~~~~vLd~G~G~G~~~~~l~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~d~vi~n~p~~ 101 (188)
T PRK14968 22 KKGDRVLEVGTGSGIVAIVAAKNGKKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFEPFRGDKFDVILFNPPYL 101 (188)
T ss_pred cCCCEEEEEccccCHHHHHHHhhcceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEeccccccccccCceEEEECCCcC
Confidence 4567999999999999999998889999999999999999999877665433 889999988865566899999887654
Q ss_pred ccC-------------------hhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcEEEE
Q 024008 186 AIE-------------------PEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAISI 246 (274)
Q Consensus 186 ~~~-------------------~~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gf~~~~~ 246 (274)
... ......+++++.++|+|||.+++..... ...+++.++++++||++..+
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~~~----------~~~~~l~~~~~~~g~~~~~~ 171 (188)
T PRK14968 102 PTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQSSL----------TGEDEVLEYLEKLGFEAEVV 171 (188)
T ss_pred CCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEccc----------CCHHHHHHHHHHCCCeeeee
Confidence 311 1234678999999999999988776322 24678999999999998877
Q ss_pred eecccc
Q 024008 247 VDNKLA 252 (274)
Q Consensus 247 ~~~~~~ 252 (274)
......
T Consensus 172 ~~~~~~ 177 (188)
T PRK14968 172 AEEKFP 177 (188)
T ss_pred eecccC
Confidence 664433
No 52
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=99.66 E-value=1.3e-15 Score=123.14 Aligned_cols=101 Identities=17% Similarity=0.302 Sum_probs=86.6
Q ss_pred CCCCeEEEEcCCcchhHHHhhC--CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCeeEEEecccc
Q 024008 107 LPKGRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFF 184 (274)
Q Consensus 107 ~~~~~vLDiG~G~G~~~~~l~~--~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~~~ 184 (274)
.++.+|||+|||+|..+..+++ ++.+++|+|+|+++++.|+++. .++++..+|+.++.++++||+|+++.++
T Consensus 42 ~~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~------~~~~~~~~d~~~~~~~~sfD~V~~~~vL 115 (204)
T TIGR03587 42 PKIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYL------PNINIIQGSLFDPFKDNFFDLVLTKGVL 115 (204)
T ss_pred CCCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhC------CCCcEEEeeccCCCCCCCEEEEEECChh
Confidence 3457999999999999999887 4679999999999999999875 2467889998886677899999999999
Q ss_pred cccChhHHHHHHHHHHhcccCCcEEEEEEcc
Q 024008 185 CAIEPEMRAAWAQKIKDFLKPDGELITLMFP 215 (274)
Q Consensus 185 ~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~~ 215 (274)
+|++++....+++++.+++ ++.+++.++.
T Consensus 116 ~hl~p~~~~~~l~el~r~~--~~~v~i~e~~ 144 (204)
T TIGR03587 116 IHINPDNLPTAYRELYRCS--NRYILIAEYY 144 (204)
T ss_pred hhCCHHHHHHHHHHHHhhc--CcEEEEEEee
Confidence 9998888889999999997 4677776653
No 53
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=99.66 E-value=1.6e-15 Score=125.89 Aligned_cols=141 Identities=22% Similarity=0.272 Sum_probs=111.9
Q ss_pred CCCeEEEEcCCcchhHHHhhCC---CCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCC-CCCCCeeEEEeccc
Q 024008 108 PKGRALVPGCGTGYDVVAMASP---ERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW-CPTELFDLIFDYTF 183 (274)
Q Consensus 108 ~~~~vLDiG~G~G~~~~~l~~~---~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~~~~~fD~v~~~~~ 183 (274)
++.+|||+|||+|..+..++.. ..+++++|+++.+++.++++....+...+++++.+|+... .+.+.||+|++..+
T Consensus 51 ~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~I~~~~~ 130 (239)
T PRK00216 51 PGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALPFPDNSFDAVTIAFG 130 (239)
T ss_pred CCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccCCCCCCCccEEEEecc
Confidence 4579999999999999988873 3799999999999999999987655556799999999873 34578999999999
Q ss_pred ccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCC---------------------CC-C----------CcccCHHH
Q 024008 184 FCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHV---------------------GG-P----------PYKVSVSD 231 (274)
Q Consensus 184 ~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~~---------------------~~-~----------~~~~~~~~ 231 (274)
+++++ ....++..+.++|+|||.+++.++...... .+ . ...++.++
T Consensus 131 l~~~~--~~~~~l~~~~~~L~~gG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (239)
T PRK00216 131 LRNVP--DIDKALREMYRVLKPGGRLVILEFSKPTNPPLKKAYDFYLFKVLPLIGKLISKNAEAYSYLAESIRAFPDQEE 208 (239)
T ss_pred cccCC--CHHHHHHHHHHhccCCcEEEEEEecCCCchHHHHHHHHHHHhhhHHHHHHHcCCcHHHHHHHHHHHhCCCHHH
Confidence 88875 346789999999999999988765443211 00 0 11246788
Q ss_pred HHHHHhcCCCcEEEEeecc
Q 024008 232 YEEVLQPMGFQAISIVDNK 250 (274)
Q Consensus 232 ~~~~~~~~Gf~~~~~~~~~ 250 (274)
+.++++++||+.+.+....
T Consensus 209 ~~~~l~~aGf~~~~~~~~~ 227 (239)
T PRK00216 209 LAAMLEEAGFERVRYRNLT 227 (239)
T ss_pred HHHHHHhCCCceeeeeeee
Confidence 9999999999998887744
No 54
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=99.66 E-value=3.4e-15 Score=119.49 Aligned_cols=127 Identities=17% Similarity=0.116 Sum_probs=100.9
Q ss_pred CCCCeEEEEcCCcchhHHHhhC--CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCeeEEEecccc
Q 024008 107 LPKGRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFF 184 (274)
Q Consensus 107 ~~~~~vLDiG~G~G~~~~~l~~--~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~~~ 184 (274)
.++.+|||+|||+|..+..+++ ++.+++++|+++.+++.++++....+. .+++++.+|..... .++||+|++....
T Consensus 30 ~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~~-~~i~~~~~d~~~~~-~~~~D~v~~~~~~ 107 (187)
T PRK08287 30 HRAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFGC-GNIDIIPGEAPIEL-PGKADAIFIGGSG 107 (187)
T ss_pred CCCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCC-CCeEEEecCchhhc-CcCCCEEEECCCc
Confidence 3567999999999999998877 456999999999999999999877665 36899999875433 3679999987654
Q ss_pred cccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcEEEEeecc
Q 024008 185 CAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAISIVDNK 250 (274)
Q Consensus 185 ~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gf~~~~~~~~~ 250 (274)
.++ ..+++.+.+.|+|||++++..... .+..++.++++++||..+.+....
T Consensus 108 ~~~-----~~~l~~~~~~Lk~gG~lv~~~~~~----------~~~~~~~~~l~~~g~~~~~~~~~~ 158 (187)
T PRK08287 108 GNL-----TAIIDWSLAHLHPGGRLVLTFILL----------ENLHSALAHLEKCGVSELDCVQLQ 158 (187)
T ss_pred cCH-----HHHHHHHHHhcCCCeEEEEEEecH----------hhHHHHHHHHHHCCCCcceEEEEE
Confidence 433 467889999999999998865322 257788999999999877765543
No 55
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.65 E-value=2.7e-15 Score=136.86 Aligned_cols=138 Identities=20% Similarity=0.184 Sum_probs=110.8
Q ss_pred CCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC---CCCCCCeeEEEecccc
Q 024008 108 PKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT---WCPTELFDLIFDYTFF 184 (274)
Q Consensus 108 ~~~~vLDiG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~---~~~~~~fD~v~~~~~~ 184 (274)
++.+|||+|||+|..+..+++.+.+++|+|+++.+++.++..... .++++++.+|+.. ..+.++||+|++..++
T Consensus 37 ~~~~vLDlGcG~G~~~~~la~~~~~v~giD~s~~~l~~a~~~~~~---~~~i~~~~~d~~~~~~~~~~~~fD~I~~~~~l 113 (475)
T PLN02336 37 EGKSVLELGAGIGRFTGELAKKAGQVIALDFIESVIKKNESINGH---YKNVKFMCADVTSPDLNISDGSVDLIFSNWLL 113 (475)
T ss_pred CCCEEEEeCCCcCHHHHHHHhhCCEEEEEeCCHHHHHHHHHHhcc---CCceEEEEecccccccCCCCCCEEEEehhhhH
Confidence 457999999999999999999888999999999999988764322 2578999999964 3456789999999999
Q ss_pred cccChhHHHHHHHHHHhcccCCcEEEEEEccCCCC-----CCCCCcccCHHHHHHHHhcCCCcEEEEee
Q 024008 185 CAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDH-----VGGPPYKVSVSDYEEVLQPMGFQAISIVD 248 (274)
Q Consensus 185 ~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~Gf~~~~~~~ 248 (274)
++++++....++.++.++|+|||++++.+...... ...+.+..+...+.+++.++||.......
T Consensus 114 ~~l~~~~~~~~l~~~~r~Lk~gG~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~ 182 (475)
T PLN02336 114 MYLSDKEVENLAERMVKWLKVGGYIFFRESCFHQSGDSKRKNNPTHYREPRFYTKVFKECHTRDEDGNS 182 (475)
T ss_pred HhCCHHHHHHHHHHHHHhcCCCeEEEEEeccCCCCCcccccCCCCeecChHHHHHHHHHheeccCCCCE
Confidence 99988778899999999999999999876543221 11334445688999999999988765443
No 56
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=99.65 E-value=3.6e-15 Score=123.76 Aligned_cols=150 Identities=20% Similarity=0.202 Sum_probs=112.8
Q ss_pred CCCeEEEEcCCcchhHHHhhCC--CCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC-CCCCCCeeEEEecccc
Q 024008 108 PKGRALVPGCGTGYDVVAMASP--ERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT-WCPTELFDLIFDYTFF 184 (274)
Q Consensus 108 ~~~~vLDiG~G~G~~~~~l~~~--~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~~~~~fD~v~~~~~~ 184 (274)
.+.+|||+|||+|..+..+++. ..+++++|+++.++..++++.. +++.++.+|+.. ..++++||+|++..++
T Consensus 34 ~~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~-----~~~~~~~~d~~~~~~~~~~fD~vi~~~~l 108 (240)
T TIGR02072 34 IPASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLS-----ENVQFICGDAEKLPLEDSSFDLIVSNLAL 108 (240)
T ss_pred CCCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcC-----CCCeEEecchhhCCCCCCceeEEEEhhhh
Confidence 3479999999999999999884 4578999999999999988764 358899999987 4466789999999999
Q ss_pred cccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCC-------CCCcccCHHHHHHHHhcCCCcEEEEeecccccCCcc
Q 024008 185 CAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVG-------GPPYKVSVSDYEEVLQPMGFQAISIVDNKLAIGPRK 257 (274)
Q Consensus 185 ~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~Gf~~~~~~~~~~~~~~~~ 257 (274)
+++. +...++.++.++|+|||.+++..+....... ......+.+++.++++.+ |..+.+........-.
T Consensus 109 ~~~~--~~~~~l~~~~~~L~~~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-f~~~~~~~~~~~~~~~- 184 (240)
T TIGR02072 109 QWCD--DLSQALSELARVLKPGGLLAFSTFGPGTLHELRQSFGQHGLRYLSLDELKALLKNS-FELLTLEEELITLSFD- 184 (240)
T ss_pred hhcc--CHHHHHHHHHHHcCCCcEEEEEeCCccCHHHHHHHHHHhccCCCCHHHHHHHHHHh-cCCcEEEEEEEEEeCC-
Confidence 9884 3467899999999999999998765432100 011234788999999998 8887776654444332
Q ss_pred chhHHHHhh
Q 024008 258 GREKLGRWK 266 (274)
Q Consensus 258 ~~~~~~~~~ 266 (274)
....+..+.
T Consensus 185 ~~~~~~~~l 193 (240)
T TIGR02072 185 DPLDVLRHL 193 (240)
T ss_pred CHHHHHHHH
Confidence 334444443
No 57
>PRK08317 hypothetical protein; Provisional
Probab=99.65 E-value=1.3e-14 Score=120.26 Aligned_cols=147 Identities=24% Similarity=0.288 Sum_probs=111.9
Q ss_pred CCCCeEEEEcCCcchhHHHhhC---CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC-CCCCCCeeEEEecc
Q 024008 107 LPKGRALVPGCGTGYDVVAMAS---PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT-WCPTELFDLIFDYT 182 (274)
Q Consensus 107 ~~~~~vLDiG~G~G~~~~~l~~---~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~~~~~fD~v~~~~ 182 (274)
.++.+|||+|||+|..+..+++ +..+++++|+++.+++.++++.... ..++.+..+|+.. ..+.++||+|++..
T Consensus 18 ~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~--~~~~~~~~~d~~~~~~~~~~~D~v~~~~ 95 (241)
T PRK08317 18 QPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGL--GPNVEFVRGDADGLPFPDGSFDAVRSDR 95 (241)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCC--CCceEEEecccccCCCCCCCceEEEEec
Confidence 4567999999999999998887 3469999999999999999883322 2579999999876 44567899999999
Q ss_pred cccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCC-----------------CCCcccCHHHHHHHHhcCCCcEEE
Q 024008 183 FFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVG-----------------GPPYKVSVSDYEEVLQPMGFQAIS 245 (274)
Q Consensus 183 ~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~Gf~~~~ 245 (274)
+++++.+ ...+++++.++|+|||.+++.......... .........++.++++++||..+.
T Consensus 96 ~~~~~~~--~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~ 173 (241)
T PRK08317 96 VLQHLED--PARALAEIARVLRPGGRVVVLDTDWDTLVWHSGDRALMRKILNFWSDHFADPWLGRRLPGLFREAGLTDIE 173 (241)
T ss_pred hhhccCC--HHHHHHHHHHHhcCCcEEEEEecCCCceeecCCChHHHHHHHHHHHhcCCCCcHHHHHHHHHHHcCCCcee
Confidence 9998853 467899999999999999987643211000 001112456899999999999988
Q ss_pred EeecccccCCcc
Q 024008 246 IVDNKLAIGPRK 257 (274)
Q Consensus 246 ~~~~~~~~~~~~ 257 (274)
+...........
T Consensus 174 ~~~~~~~~~~~~ 185 (241)
T PRK08317 174 VEPYTLIETDLK 185 (241)
T ss_pred EEEEEEeccCcc
Confidence 887766554443
No 58
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=99.65 E-value=2.5e-15 Score=125.80 Aligned_cols=137 Identities=22% Similarity=0.244 Sum_probs=106.3
Q ss_pred HHHHHhcCCCCCCeEEEEcCCcchhHHHhhCCCC-eEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCee
Q 024008 98 IVHLHQSGALPKGRALVPGCGTGYDVVAMASPER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFD 176 (274)
Q Consensus 98 ~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~-~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~fD 176 (274)
..++++....++.+|||+|||+|.+++..++.|+ +++|+|++|.++..|++|+..+++...+.....+.......++||
T Consensus 152 cL~~Le~~~~~g~~vlDvGcGSGILaIAa~kLGA~~v~g~DiDp~AV~aa~eNa~~N~v~~~~~~~~~~~~~~~~~~~~D 231 (300)
T COG2264 152 CLEALEKLLKKGKTVLDVGCGSGILAIAAAKLGAKKVVGVDIDPQAVEAARENARLNGVELLVQAKGFLLLEVPENGPFD 231 (300)
T ss_pred HHHHHHHhhcCCCEEEEecCChhHHHHHHHHcCCceEEEecCCHHHHHHHHHHHHHcCCchhhhcccccchhhcccCccc
Confidence 4455555667889999999999999999999988 699999999999999999998876542333333333333346999
Q ss_pred EEEecccccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcEEEEeec
Q 024008 177 LIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAISIVDN 249 (274)
Q Consensus 177 ~v~~~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gf~~~~~~~~ 249 (274)
+|++|-.-. -...+...+.+.++|||+++++..-.. ..+.+.+.++++||.++.+...
T Consensus 232 vIVANILA~-----vl~~La~~~~~~lkpgg~lIlSGIl~~----------q~~~V~~a~~~~gf~v~~~~~~ 289 (300)
T COG2264 232 VIVANILAE-----VLVELAPDIKRLLKPGGRLILSGILED----------QAESVAEAYEQAGFEVVEVLER 289 (300)
T ss_pred EEEehhhHH-----HHHHHHHHHHHHcCCCceEEEEeehHh----------HHHHHHHHHHhCCCeEeEEEec
Confidence 999886322 345788999999999999998763221 3678888998999999888765
No 59
>PRK14967 putative methyltransferase; Provisional
Probab=99.65 E-value=1.3e-14 Score=119.27 Aligned_cols=147 Identities=19% Similarity=0.225 Sum_probs=111.6
Q ss_pred HHHHHHhcC-CCCCCeEEEEcCCcchhHHHhhCCCC-eEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCC
Q 024008 97 IIVHLHQSG-ALPKGRALVPGCGTGYDVVAMASPER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTEL 174 (274)
Q Consensus 97 ~~~~~~~~~-~~~~~~vLDiG~G~G~~~~~l~~~~~-~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~ 174 (274)
.+...+... ..++.+|||+|||+|..+..+++.+. +++++|+++.+++.++++....+. ++.++.+|+....+.++
T Consensus 24 ~l~~~l~~~~~~~~~~vLDlGcG~G~~~~~la~~~~~~v~~vD~s~~~l~~a~~n~~~~~~--~~~~~~~d~~~~~~~~~ 101 (223)
T PRK14967 24 LLADALAAEGLGPGRRVLDLCTGSGALAVAAAAAGAGSVTAVDISRRAVRSARLNALLAGV--DVDVRRGDWARAVEFRP 101 (223)
T ss_pred HHHHHHHhcccCCCCeEEEecCCHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHhCC--eeEEEECchhhhccCCC
Confidence 344444433 33457999999999999999888665 999999999999999999876653 58899999987666678
Q ss_pred eeEEEecccccccCh-------------------hHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHH
Q 024008 175 FDLIFDYTFFCAIEP-------------------EMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEV 235 (274)
Q Consensus 175 fD~v~~~~~~~~~~~-------------------~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (274)
||+|+++..+..-+. .....+++++.++|+|||++++..... ....++.+.
T Consensus 102 fD~Vi~npPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~~~~----------~~~~~~~~~ 171 (223)
T PRK14967 102 FDVVVSNPPYVPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQSEL----------SGVERTLTR 171 (223)
T ss_pred eeEEEECCCCCCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEEecc----------cCHHHHHHH
Confidence 999999865442211 124567889999999999998765322 145688899
Q ss_pred HhcCCCcEEEEeecccccCC
Q 024008 236 LQPMGFQAISIVDNKLAIGP 255 (274)
Q Consensus 236 ~~~~Gf~~~~~~~~~~~~~~ 255 (274)
+++.||.+........++.+
T Consensus 172 l~~~g~~~~~~~~~~~~~~~ 191 (223)
T PRK14967 172 LSEAGLDAEVVASQWIPFGP 191 (223)
T ss_pred HHHCCCCeEEEEeeccCccH
Confidence 99999998887776666644
No 60
>PLN03075 nicotianamine synthase; Provisional
Probab=99.64 E-value=3.4e-15 Score=125.39 Aligned_cols=137 Identities=16% Similarity=0.129 Sum_probs=104.0
Q ss_pred cchhHhhhcCCCCccCCCccHHHHHHHhc----------C-CCCCCeEEEEcCCcchh-HHHhhC---CCCeEEEEeCCh
Q 024008 76 GGWEKCWEEGLTPWDIGQPAPIIVHLHQS----------G-ALPKGRALVPGCGTGYD-VVAMAS---PERYVVGLEISD 140 (274)
Q Consensus 76 ~~w~~~~~~~~~~~~~~~~~~~~~~~~~~----------~-~~~~~~vLDiG~G~G~~-~~~l~~---~~~~v~~iD~s~ 140 (274)
.+|.........+|......++...+++. . ..++.+|+|||||.|.. +..++. ++.+++++|+++
T Consensus 80 ~~~a~~i~~~~~p~~~l~~Fpy~~nY~~L~~lE~~~L~~~~~~~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~ 159 (296)
T PLN03075 80 AHFSTILGSFDNPLDHLNLFPYYNNYLKLSKLEFDLLSQHVNGVPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDP 159 (296)
T ss_pred HHHHHHHhcCCcHHHHhhcCCchHHHHHHHHHHHHHHHHhhcCCCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCH
Confidence 45555555555566655544444433321 1 23668999999997754 333432 667999999999
Q ss_pred HHHHHHHHHhhc-CCCCcceEEEEcccCCCC-CCCCeeEEEecccccccChhHHHHHHHHHHhcccCCcEEEEEE
Q 024008 141 IAIKKAEELSSS-LPNAKFVSFLKADFFTWC-PTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLM 213 (274)
Q Consensus 141 ~~~~~a~~~~~~-~~~~~~v~~~~~d~~~~~-~~~~fD~v~~~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~ 213 (274)
++++.|++.+.. .++.++++|..+|+.+.. ..++||+|++. ++++++.+....+++++.+.|+|||.+++..
T Consensus 160 ~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~~l~~FDlVF~~-ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr~ 233 (296)
T PLN03075 160 SANDVARRLVSSDPDLSKRMFFHTADVMDVTESLKEYDVVFLA-ALVGMDKEEKVKVIEHLGKHMAPGALLMLRS 233 (296)
T ss_pred HHHHHHHHHhhhccCccCCcEEEECchhhcccccCCcCEEEEe-cccccccccHHHHHHHHHHhcCCCcEEEEec
Confidence 999999999964 677789999999998754 34789999999 8888877777899999999999999999876
No 61
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=99.64 E-value=2.9e-15 Score=122.20 Aligned_cols=135 Identities=24% Similarity=0.274 Sum_probs=112.8
Q ss_pred CCeEEEEcCCcchhHHHhhCC--CCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCC---CCCCCeeEEEeccc
Q 024008 109 KGRALVPGCGTGYDVVAMASP--ERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW---CPTELFDLIFDYTF 183 (274)
Q Consensus 109 ~~~vLDiG~G~G~~~~~l~~~--~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~---~~~~~fD~v~~~~~ 183 (274)
..+|||+|||+|..++.+++. .+++++||+.+++.+.|++++..+++.++++++++|+.+. ....+||+|+|+..
T Consensus 45 ~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~~~~~~fD~Ii~NPP 124 (248)
T COG4123 45 KGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKALVFASFDLIICNPP 124 (248)
T ss_pred CCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhhcccccccCEEEeCCC
Confidence 689999999999999999984 4799999999999999999999999999999999999873 33357999999988
Q ss_pred ccccChh----------------HHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcEEEEe
Q 024008 184 FCAIEPE----------------MRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAISIV 247 (274)
Q Consensus 184 ~~~~~~~----------------~~~~~l~~l~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gf~~~~~~ 247 (274)
+...... ..+.+++...++|||||.+.++.... ...++.+++.+.+|....+.
T Consensus 125 yf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V~r~e-----------rl~ei~~~l~~~~~~~k~i~ 193 (248)
T COG4123 125 YFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFVHRPE-----------RLAEIIELLKSYNLEPKRIQ 193 (248)
T ss_pred CCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEEecHH-----------HHHHHHHHHHhcCCCceEEE
Confidence 7654322 14789999999999999999987322 56788999999999988887
Q ss_pred ecccccC
Q 024008 248 DNKLAIG 254 (274)
Q Consensus 248 ~~~~~~~ 254 (274)
.......
T Consensus 194 ~V~p~~~ 200 (248)
T COG4123 194 FVYPKIG 200 (248)
T ss_pred EecCCCC
Confidence 7554433
No 62
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=99.64 E-value=1.1e-14 Score=121.79 Aligned_cols=140 Identities=24% Similarity=0.295 Sum_probs=108.4
Q ss_pred HHHHHHhcCCCCCCeEEEEcCCcchhHHHhhC--CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCC
Q 024008 97 IIVHLHQSGALPKGRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTEL 174 (274)
Q Consensus 97 ~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~--~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~ 174 (274)
.+..++......+.+|||+|||+|..+..++. ++.+++|+|+++.+++.++++....++. +++++.+|+.+..+.++
T Consensus 76 l~~~~l~~~~~~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~-~~~~~~~d~~~~~~~~~ 154 (251)
T TIGR03534 76 LVEAALERLKKGPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARLGLD-NVTFLQSDWFEPLPGGK 154 (251)
T ss_pred HHHHHHHhcccCCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCC-eEEEEECchhccCcCCc
Confidence 34444444444456999999999999999987 4679999999999999999999877663 69999999987666789
Q ss_pred eeEEEeccccccc------Chh------------------HHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHH
Q 024008 175 FDLIFDYTFFCAI------EPE------------------MRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVS 230 (274)
Q Consensus 175 fD~v~~~~~~~~~------~~~------------------~~~~~l~~l~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~ 230 (274)
||+|+++.++... ... ....++..+.++|+|||.+++.... ...+
T Consensus 155 fD~Vi~npPy~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~~~-----------~~~~ 223 (251)
T TIGR03534 155 FDLIVSNPPYIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEIGY-----------DQGE 223 (251)
T ss_pred eeEEEECCCCCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEECc-----------cHHH
Confidence 9999998765431 111 1246789999999999998886411 1467
Q ss_pred HHHHHHhcCCCcEEEEee
Q 024008 231 DYEEVLQPMGFQAISIVD 248 (274)
Q Consensus 231 ~~~~~~~~~Gf~~~~~~~ 248 (274)
++.++++++||..+.+..
T Consensus 224 ~~~~~l~~~gf~~v~~~~ 241 (251)
T TIGR03534 224 AVRALFEAAGFADVETRK 241 (251)
T ss_pred HHHHHHHhCCCCceEEEe
Confidence 899999999998777644
No 63
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=99.64 E-value=4.9e-15 Score=123.81 Aligned_cols=122 Identities=23% Similarity=0.274 Sum_probs=96.6
Q ss_pred CCCCCeEEEEcCCcchhHHHhhCCCC-eEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCeeEEEecccc
Q 024008 106 ALPKGRALVPGCGTGYDVVAMASPER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFF 184 (274)
Q Consensus 106 ~~~~~~vLDiG~G~G~~~~~l~~~~~-~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~~~ 184 (274)
..++.+|||+|||+|..+..+++.+. +++|+|+++.+++.|+++...+++..++.+..+|. +||+|+++...
T Consensus 117 ~~~~~~VLDiGcGsG~l~i~~~~~g~~~v~giDis~~~l~~A~~n~~~~~~~~~~~~~~~~~-------~fD~Vvani~~ 189 (250)
T PRK00517 117 VLPGKTVLDVGCGSGILAIAAAKLGAKKVLAVDIDPQAVEAARENAELNGVELNVYLPQGDL-------KADVIVANILA 189 (250)
T ss_pred cCCCCEEEEeCCcHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCCCceEEEccCCC-------CcCEEEEcCcH
Confidence 45678999999999999998888766 59999999999999999998776544455444332 79999986432
Q ss_pred cccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcEEEEeec
Q 024008 185 CAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAISIVDN 249 (274)
Q Consensus 185 ~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gf~~~~~~~~ 249 (274)
+....++.++.++|+|||.+++..... ...+++.+.++..||.++.....
T Consensus 190 -----~~~~~l~~~~~~~LkpgG~lilsgi~~----------~~~~~v~~~l~~~Gf~~~~~~~~ 239 (250)
T PRK00517 190 -----NPLLELAPDLARLLKPGGRLILSGILE----------EQADEVLEAYEEAGFTLDEVLER 239 (250)
T ss_pred -----HHHHHHHHHHHHhcCCCcEEEEEECcH----------hhHHHHHHHHHHCCCEEEEEEEe
Confidence 334578899999999999999976432 15678999999999998876653
No 64
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=99.63 E-value=5.5e-15 Score=116.36 Aligned_cols=105 Identities=27% Similarity=0.422 Sum_probs=88.7
Q ss_pred CCCeEEEEcCCcchhHHHhhCCC--CeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCeeEEEeccccc
Q 024008 108 PKGRALVPGCGTGYDVVAMASPE--RYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFC 185 (274)
Q Consensus 108 ~~~~vLDiG~G~G~~~~~l~~~~--~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~~~~ 185 (274)
+..+|||+|||+|..+..+++.+ .+|+++|+++.+++.++++...+++.+ ++++..|+.+..+.++||+|+++.+++
T Consensus 31 ~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~n~~~~-v~~~~~d~~~~~~~~~fD~Iv~NPP~~ 109 (170)
T PF05175_consen 31 KGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAERNGLEN-VEVVQSDLFEALPDGKFDLIVSNPPFH 109 (170)
T ss_dssp TTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHHTTCTT-EEEEESSTTTTCCTTCEEEEEE---SB
T ss_pred cCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCccc-cccccccccccccccceeEEEEccchh
Confidence 56899999999999999999844 369999999999999999999988765 999999999877688999999998876
Q ss_pred ccCh---hHHHHHHHHHHhcccCCcEEEEEE
Q 024008 186 AIEP---EMRAAWAQKIKDFLKPDGELITLM 213 (274)
Q Consensus 186 ~~~~---~~~~~~l~~l~~~L~~gG~l~~~~ 213 (274)
.-.. .....++....+.|+|||.++++.
T Consensus 110 ~~~~~~~~~~~~~i~~a~~~Lk~~G~l~lv~ 140 (170)
T PF05175_consen 110 AGGDDGLDLLRDFIEQARRYLKPGGRLFLVI 140 (170)
T ss_dssp TTSHCHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred cccccchhhHHHHHHHHHHhccCCCEEEEEe
Confidence 5432 356889999999999999997765
No 65
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=99.63 E-value=9e-15 Score=124.62 Aligned_cols=132 Identities=16% Similarity=0.145 Sum_probs=103.2
Q ss_pred HHHhcCCCCCCeEEEEcCCcchhHHHhhCCCC-eEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCeeEE
Q 024008 100 HLHQSGALPKGRALVPGCGTGYDVVAMASPER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLI 178 (274)
Q Consensus 100 ~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~-~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v 178 (274)
+++.....++.+|||+|||+|..+..+++.+. +|+++|+++.+++.|+++...+++..++.+...+... ...++||+|
T Consensus 151 ~~l~~~~~~g~~VLDvGcGsG~lai~aa~~g~~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~~~-~~~~~fDlV 229 (288)
T TIGR00406 151 EWLEDLDLKDKNVIDVGCGSGILSIAALKLGAAKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYLEQ-PIEGKADVI 229 (288)
T ss_pred HHHHhhcCCCCEEEEeCCChhHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCCCcceEEEeccccc-ccCCCceEE
Confidence 34444455678999999999999998888665 8999999999999999999888776677777776433 235689999
Q ss_pred EecccccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcEEEEee
Q 024008 179 FDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAISIVD 248 (274)
Q Consensus 179 ~~~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gf~~~~~~~ 248 (274)
+++.... ....++.++.++|+|||.+++..... ....++.+.+++. |+++.+..
T Consensus 230 van~~~~-----~l~~ll~~~~~~LkpgG~li~sgi~~----------~~~~~v~~~~~~~-f~~~~~~~ 283 (288)
T TIGR00406 230 VANILAE-----VIKELYPQFSRLVKPGGWLILSGILE----------TQAQSVCDAYEQG-FTVVEIRQ 283 (288)
T ss_pred EEecCHH-----HHHHHHHHHHHHcCCCcEEEEEeCcH----------hHHHHHHHHHHcc-CceeeEec
Confidence 9876533 34578899999999999999876432 1467888888876 98877655
No 66
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=99.63 E-value=2.6e-15 Score=126.89 Aligned_cols=133 Identities=23% Similarity=0.238 Sum_probs=102.2
Q ss_pred HHHHHhcCCCCCCeEEEEcCCcchhHHHhhCCCC-eEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCee
Q 024008 98 IVHLHQSGALPKGRALVPGCGTGYDVVAMASPER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFD 176 (274)
Q Consensus 98 ~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~-~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~fD 176 (274)
..+++.....++.+|||+|||+|.+++..++.|+ +|+++|++|.+++.|++|+..+++.+++.+. . .......+||
T Consensus 151 cl~~l~~~~~~g~~vLDvG~GSGILaiaA~klGA~~v~a~DiDp~Av~~a~~N~~~N~~~~~~~v~--~-~~~~~~~~~d 227 (295)
T PF06325_consen 151 CLELLEKYVKPGKRVLDVGCGSGILAIAAAKLGAKKVVAIDIDPLAVEAARENAELNGVEDRIEVS--L-SEDLVEGKFD 227 (295)
T ss_dssp HHHHHHHHSSTTSEEEEES-TTSHHHHHHHHTTBSEEEEEESSCHHHHHHHHHHHHTT-TTCEEES--C-TSCTCCS-EE
T ss_pred HHHHHHHhccCCCEEEEeCCcHHHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHHcCCCeeEEEE--E-ecccccccCC
Confidence 4455555567788999999999999999999888 7999999999999999999999988766553 1 2223348999
Q ss_pred EEEecccccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcEEEEeec
Q 024008 177 LIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAISIVDN 249 (274)
Q Consensus 177 ~v~~~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gf~~~~~~~~ 249 (274)
+|+++-... .+..++..+.++|+|||.++++..-.. ..+++.+.++. ||.++.....
T Consensus 228 lvvANI~~~-----vL~~l~~~~~~~l~~~G~lIlSGIl~~----------~~~~v~~a~~~-g~~~~~~~~~ 284 (295)
T PF06325_consen 228 LVVANILAD-----VLLELAPDIASLLKPGGYLILSGILEE----------QEDEVIEAYKQ-GFELVEEREE 284 (295)
T ss_dssp EEEEES-HH-----HHHHHHHHCHHHEEEEEEEEEEEEEGG----------GHHHHHHHHHT-TEEEEEEEEE
T ss_pred EEEECCCHH-----HHHHHHHHHHHhhCCCCEEEEccccHH----------HHHHHHHHHHC-CCEEEEEEEE
Confidence 999875544 345678889999999999998764332 57888899977 9998877653
No 67
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=99.62 E-value=4.7e-17 Score=116.59 Aligned_cols=95 Identities=33% Similarity=0.478 Sum_probs=62.8
Q ss_pred EEEcCCcchhHHHhhC--CCCeEEEEeCChHHHHHHHHHhhcCCCCc--ceEEEEcccCCCCCCCCeeEEEecccccccC
Q 024008 113 LVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAK--FVSFLKADFFTWCPTELFDLIFDYTFFCAIE 188 (274)
Q Consensus 113 LDiG~G~G~~~~~l~~--~~~~v~~iD~s~~~~~~a~~~~~~~~~~~--~v~~~~~d~~~~~~~~~fD~v~~~~~~~~~~ 188 (274)
||+|||+|..+..++. +..+++++|+|+.+++.++++........ .+++...|.....+.++||+|++..+++|+
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~V~~~~vl~~l- 79 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELGNDNFERLRFDVLDLFDYDPPESFDLVVASNVLHHL- 79 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT---EEEEE--SSS---CCC----SEEEEE-TTS---
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCcceeEEEeecCChhhcccccccceehhhhhHhhh-
Confidence 7999999999998887 47899999999999999988887764321 233333444333444699999999999999
Q ss_pred hhHHHHHHHHHHhcccCCcEE
Q 024008 189 PEMRAAWAQKIKDFLKPDGEL 209 (274)
Q Consensus 189 ~~~~~~~l~~l~~~L~~gG~l 209 (274)
++...+++++.++|+|||+|
T Consensus 80 -~~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 80 -EDIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp -S-HHHHHHHHTTT-TSS-EE
T ss_pred -hhHHHHHHHHHHHcCCCCCC
Confidence 56679999999999999986
No 68
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=99.62 E-value=9.2e-15 Score=121.08 Aligned_cols=139 Identities=18% Similarity=0.191 Sum_probs=109.4
Q ss_pred CCCCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCC--CCCCeeEEEeccc
Q 024008 106 ALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC--PTELFDLIFDYTF 183 (274)
Q Consensus 106 ~~~~~~vLDiG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--~~~~fD~v~~~~~ 183 (274)
..++.+|||+|||+|..+..+++.+.+++++|+++.++..++++....+. .+++...|+.... ..++||+|++..+
T Consensus 46 ~~~~~~vLdiG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~fD~Ii~~~~ 123 (233)
T PRK05134 46 GLFGKRVLDVGCGGGILSESMARLGADVTGIDASEENIEVARLHALESGL--KIDYRQTTAEELAAEHPGQFDVVTCMEM 123 (233)
T ss_pred CCCCCeEEEeCCCCCHHHHHHHHcCCeEEEEcCCHHHHHHHHHHHHHcCC--ceEEEecCHHHhhhhcCCCccEEEEhhH
Confidence 34567999999999999999988888999999999999999988765543 4778888876632 4578999999999
Q ss_pred ccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCC-----------------CC--CCCcccCHHHHHHHHhcCCCcEE
Q 024008 184 FCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDH-----------------VG--GPPYKVSVSDYEEVLQPMGFQAI 244 (274)
Q Consensus 184 ~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~-----------------~~--~~~~~~~~~~~~~~~~~~Gf~~~ 244 (274)
+++++ ....++..+.+.|+|||.+++........ .. .....++.+++.++++.+||.++
T Consensus 124 l~~~~--~~~~~l~~~~~~L~~gG~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~v 201 (233)
T PRK05134 124 LEHVP--DPASFVRACAKLVKPGGLVFFSTLNRNLKSYLLAIVGAEYVLRMLPKGTHDYKKFIKPSELAAWLRQAGLEVQ 201 (233)
T ss_pred hhccC--CHHHHHHHHHHHcCCCcEEEEEecCCChHHHHHHHhhHHHHhhhcCcccCchhhcCCHHHHHHHHHHCCCeEe
Confidence 99875 34578899999999999999876532110 00 01123578999999999999999
Q ss_pred EEee
Q 024008 245 SIVD 248 (274)
Q Consensus 245 ~~~~ 248 (274)
....
T Consensus 202 ~~~~ 205 (233)
T PRK05134 202 DITG 205 (233)
T ss_pred eeee
Confidence 8764
No 69
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=99.61 E-value=2e-14 Score=122.02 Aligned_cols=129 Identities=23% Similarity=0.276 Sum_probs=103.0
Q ss_pred CCCeEEEEcCCcchhHHHhhC--CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCeeEEEeccccc
Q 024008 108 PKGRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFC 185 (274)
Q Consensus 108 ~~~~vLDiG~G~G~~~~~l~~--~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~~~~ 185 (274)
++.+|||+|||+|..+..+++ ++.+++++|+|+.+++.|++++...++.++++++.+|+.+..+.++||+|+++..+.
T Consensus 121 ~~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~~~~~~~~~fD~Iv~NPPy~ 200 (284)
T TIGR03533 121 PVKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFAALPGRKYDLIVSNPPYV 200 (284)
T ss_pred CCCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhccCCCCccEEEECCCCC
Confidence 347999999999999999987 467999999999999999999988877678999999997755556899999986542
Q ss_pred c------cCh-----------------hHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCc
Q 024008 186 A------IEP-----------------EMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQ 242 (274)
Q Consensus 186 ~------~~~-----------------~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gf~ 242 (274)
. +++ +....++..+.++|+|||++++... .+.+.+.+++..+||.
T Consensus 201 ~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e~g------------~~~~~v~~~~~~~~~~ 268 (284)
T TIGR03533 201 DAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVEVG------------NSMEALEEAYPDVPFT 268 (284)
T ss_pred CccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEEC------------cCHHHHHHHHHhCCCc
Confidence 2 110 1236778999999999999987652 1456899999999987
Q ss_pred EEEEee
Q 024008 243 AISIVD 248 (274)
Q Consensus 243 ~~~~~~ 248 (274)
-.....
T Consensus 269 ~~~~~~ 274 (284)
T TIGR03533 269 WLEFEN 274 (284)
T ss_pred eeeecC
Confidence 654443
No 70
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=99.61 E-value=1.7e-14 Score=118.72 Aligned_cols=139 Identities=18% Similarity=0.191 Sum_probs=109.3
Q ss_pred CCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCC--CCCCeeEEEeccccc
Q 024008 108 PKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC--PTELFDLIFDYTFFC 185 (274)
Q Consensus 108 ~~~~vLDiG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--~~~~fD~v~~~~~~~ 185 (274)
++.+|||+|||+|..+..+++.+.+++++|+++.+++.++++....+. .++.+...|+.+.. ..++||+|++..+++
T Consensus 45 ~~~~vLdlG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~D~i~~~~~l~ 123 (224)
T TIGR01983 45 FGLRVLDVGCGGGLLSEPLARLGANVTGIDASEENIEVAKLHAKKDPL-LKIEYRCTSVEDLAEKGAKSFDVVTCMEVLE 123 (224)
T ss_pred CCCeEEEECCCCCHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHcCC-CceEEEeCCHHHhhcCCCCCccEEEehhHHH
Confidence 467999999999999999888888999999999999999998876543 25888888887632 237899999999999
Q ss_pred ccChhHHHHHHHHHHhcccCCcEEEEEEccCCCC-----------------CCCC--CcccCHHHHHHHHhcCCCcEEEE
Q 024008 186 AIEPEMRAAWAQKIKDFLKPDGELITLMFPISDH-----------------VGGP--PYKVSVSDYEEVLQPMGFQAISI 246 (274)
Q Consensus 186 ~~~~~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~-----------------~~~~--~~~~~~~~~~~~~~~~Gf~~~~~ 246 (274)
++. ....+++.+.++|+|||.+++........ ..+. ...++..++.++++++||+++++
T Consensus 124 ~~~--~~~~~l~~~~~~L~~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~G~~i~~~ 201 (224)
T TIGR01983 124 HVP--DPQAFIRACAQLLKPGGILFFSTINRTPKSYLLAIVGAEYILRIVPKGTHDWEKFIKPSELTSWLESAGLRVKDV 201 (224)
T ss_pred hCC--CHHHHHHHHHHhcCCCcEEEEEecCCCchHHHHHHHhhhhhhhcCCCCcCChhhcCCHHHHHHHHHHcCCeeeee
Confidence 885 34578999999999999988876432210 0011 12347889999999999999988
Q ss_pred eec
Q 024008 247 VDN 249 (274)
Q Consensus 247 ~~~ 249 (274)
...
T Consensus 202 ~~~ 204 (224)
T TIGR01983 202 KGL 204 (224)
T ss_pred eeE
Confidence 753
No 71
>PRK06202 hypothetical protein; Provisional
Probab=99.61 E-value=1e-14 Score=120.77 Aligned_cols=137 Identities=14% Similarity=0.076 Sum_probs=101.3
Q ss_pred CCCCeEEEEcCCcchhHHHhhC------CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC-CCCCCCeeEEE
Q 024008 107 LPKGRALVPGCGTGYDVVAMAS------PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT-WCPTELFDLIF 179 (274)
Q Consensus 107 ~~~~~vLDiG~G~G~~~~~l~~------~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~~~~~fD~v~ 179 (274)
.++.+|||+|||+|..+..+++ .+.+++|+|+++++++.|+++.... ++++...+... ..++++||+|+
T Consensus 59 ~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~----~~~~~~~~~~~l~~~~~~fD~V~ 134 (232)
T PRK06202 59 DRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRP----GVTFRQAVSDELVAEGERFDVVT 134 (232)
T ss_pred CCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccC----CCeEEEEecccccccCCCccEEE
Confidence 3457999999999999888764 2359999999999999999886443 35566655543 23467899999
Q ss_pred ecccccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCC-------------------CCC---CCcccCHHHHHHHHh
Q 024008 180 DYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDH-------------------VGG---PPYKVSVSDYEEVLQ 237 (274)
Q Consensus 180 ~~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~-------------------~~~---~~~~~~~~~~~~~~~ 237 (274)
++.+++|++++....++.++.++++ |.+++.++..... ..+ ....++.+++.++++
T Consensus 135 ~~~~lhh~~d~~~~~~l~~~~r~~~--~~~~i~dl~~~~~~~~~~~~~~~~~~~~~~~~~d~~~s~~~~~~~~el~~ll~ 212 (232)
T PRK06202 135 SNHFLHHLDDAEVVRLLADSAALAR--RLVLHNDLIRSRLAYALFWAGTRLLSRSSFVHTDGLLSVRRSYTPAELAALAP 212 (232)
T ss_pred ECCeeecCChHHHHHHHHHHHHhcC--eeEEEeccccCHHHHHHHHHHHHHhccCceeeccchHHHHhhcCHHHHHHHhh
Confidence 9999999987777789999999998 5555554433210 001 012468999999999
Q ss_pred cCCCcEEEEeecc
Q 024008 238 PMGFQAISIVDNK 250 (274)
Q Consensus 238 ~~Gf~~~~~~~~~ 250 (274)
+ ||++.......
T Consensus 213 ~-Gf~~~~~~~~~ 224 (232)
T PRK06202 213 Q-GWRVERQWPFR 224 (232)
T ss_pred C-CCeEEecccee
Confidence 9 99987766544
No 72
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=99.61 E-value=5.2e-15 Score=119.70 Aligned_cols=126 Identities=21% Similarity=0.100 Sum_probs=98.7
Q ss_pred CCCeEEEEcCCcchhHHHhhC--CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEccc-CCC---CCCCCeeEEEec
Q 024008 108 PKGRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADF-FTW---CPTELFDLIFDY 181 (274)
Q Consensus 108 ~~~~vLDiG~G~G~~~~~l~~--~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~-~~~---~~~~~fD~v~~~ 181 (274)
++.+|||+|||+|..+..+++ ++.+++++|+++.+++.|+++....+. .+++++++|+ ... .++++||+|+++
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~~-~~v~~~~~d~~~~l~~~~~~~~~D~V~~~ 118 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEGL-TNLRLLCGDAVEVLLDMFPDGSLDRIYLN 118 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcCC-CCEEEEecCHHHHHHHHcCccccceEEEE
Confidence 567999999999999999877 467899999999999999999877665 5799999998 432 456789999987
Q ss_pred ccccccCh------hHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcEE
Q 024008 182 TFFCAIEP------EMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAI 244 (274)
Q Consensus 182 ~~~~~~~~------~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gf~~~ 244 (274)
....+... .....+++++.++|+|||.+++..... .-..++.+.+++.||.+.
T Consensus 119 ~~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~~~~----------~~~~~~~~~~~~~g~~~~ 177 (202)
T PRK00121 119 FPDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFATDWE----------GYAEYMLEVLSAEGGFLV 177 (202)
T ss_pred CCCCCCCccccccccCCHHHHHHHHHHcCCCCEEEEEcCCH----------HHHHHHHHHHHhCccccc
Confidence 54332110 113678999999999999999876322 135678889999998765
No 73
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=99.60 E-value=2.3e-14 Score=117.67 Aligned_cols=139 Identities=19% Similarity=0.241 Sum_probs=109.2
Q ss_pred CCCeEEEEcCCcchhHHHhhCCC---CeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCC-CCCCCeeEEEeccc
Q 024008 108 PKGRALVPGCGTGYDVVAMASPE---RYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW-CPTELFDLIFDYTF 183 (274)
Q Consensus 108 ~~~~vLDiG~G~G~~~~~l~~~~---~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~~~~~fD~v~~~~~ 183 (274)
++.+|||+|||+|..+..+++.. .+++++|+++.+++.++++.. ...++++..+|+.+. .+.++||+|++..+
T Consensus 39 ~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~---~~~~i~~~~~d~~~~~~~~~~~D~i~~~~~ 115 (223)
T TIGR01934 39 KGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSE---LPLNIEFIQADAEALPFEDNSFDAVTIAFG 115 (223)
T ss_pred CCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhc---cCCCceEEecchhcCCCCCCcEEEEEEeee
Confidence 56899999999999999888733 489999999999999998875 225689999999873 44578999999998
Q ss_pred ccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCC-----------------------CCC---------CcccCHHH
Q 024008 184 FCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHV-----------------------GGP---------PYKVSVSD 231 (274)
Q Consensus 184 ~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~~-----------------------~~~---------~~~~~~~~ 231 (274)
+++.+ ....+++.+.+.|+|||++++..+...... ... ....+..+
T Consensus 116 ~~~~~--~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (223)
T TIGR01934 116 LRNVT--DIQKALREMYRVLKPGGRLVILEFSKPANALLKKFYKFYLKNVLPSIGGLISKNAEAYTYLPESIRAFPSQEE 193 (223)
T ss_pred eCCcc--cHHHHHHHHHHHcCCCcEEEEEEecCCCchhhHHHHHHHHHHhhhhhhhhhcCCchhhHHHHHHHHhCCCHHH
Confidence 88774 456889999999999999998775432210 000 11237788
Q ss_pred HHHHHhcCCCcEEEEeeccc
Q 024008 232 YEEVLQPMGFQAISIVDNKL 251 (274)
Q Consensus 232 ~~~~~~~~Gf~~~~~~~~~~ 251 (274)
+.++++++||+.+.+.....
T Consensus 194 ~~~~l~~aGf~~~~~~~~~~ 213 (223)
T TIGR01934 194 LAAMLKEAGFEEVRYRSLTF 213 (223)
T ss_pred HHHHHHHcCCccceeeeeec
Confidence 99999999999988876543
No 74
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=99.60 E-value=2e-14 Score=114.32 Aligned_cols=139 Identities=19% Similarity=0.215 Sum_probs=103.4
Q ss_pred CeEEEEcCCcchhHHHhhCCCC-eEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCC-CCeeEEEeccccccc
Q 024008 110 GRALVPGCGTGYDVVAMASPER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPT-ELFDLIFDYTFFCAI 187 (274)
Q Consensus 110 ~~vLDiG~G~G~~~~~l~~~~~-~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~-~~fD~v~~~~~~~~~ 187 (274)
.+.||+|+|.|+.+..++.+-+ +|..+|+.+..++.|++.+.... ....++.+..++++.|. ++||+||+.+++.|+
T Consensus 57 ~~alDcGAGIGRVTk~lLl~~f~~VDlVEp~~~Fl~~a~~~l~~~~-~~v~~~~~~gLQ~f~P~~~~YDlIW~QW~lghL 135 (218)
T PF05891_consen 57 NRALDCGAGIGRVTKGLLLPVFDEVDLVEPVEKFLEQAKEYLGKDN-PRVGEFYCVGLQDFTPEEGKYDLIWIQWCLGHL 135 (218)
T ss_dssp SEEEEET-TTTHHHHHTCCCC-SEEEEEES-HHHHHHHHHHTCCGG-CCEEEEEES-GGG----TT-EEEEEEES-GGGS
T ss_pred ceEEecccccchhHHHHHHHhcCEeEEeccCHHHHHHHHHHhcccC-CCcceEEecCHhhccCCCCcEeEEEehHhhccC
Confidence 6999999999999998877655 89999999999999998776521 13468888888886665 699999999999999
Q ss_pred ChhHHHHHHHHHHhcccCCcEEEEEEccCCCC-----CCCCCcccCHHHHHHHHhcCCCcEEEEeec
Q 024008 188 EPEMRAAWAQKIKDFLKPDGELITLMFPISDH-----VGGPPYKVSVSDYEEVLQPMGFQAISIVDN 249 (274)
Q Consensus 188 ~~~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~Gf~~~~~~~~ 249 (274)
+++++-.++.++...|+|+|.|++-+...... .......-+.+.+.++|++||++++.....
T Consensus 136 TD~dlv~fL~RCk~~L~~~G~IvvKEN~~~~~~~~~D~~DsSvTRs~~~~~~lF~~AGl~~v~~~~Q 202 (218)
T PF05891_consen 136 TDEDLVAFLKRCKQALKPNGVIVVKENVSSSGFDEFDEEDSSVTRSDEHFRELFKQAGLRLVKEEKQ 202 (218)
T ss_dssp -HHHHHHHHHHHHHHEEEEEEEEEEEEEESSSEEEEETTTTEEEEEHHHHHHHHHHCT-EEEEEEE-
T ss_pred CHHHHHHHHHHHHHhCcCCcEEEEEecCCCCCCcccCCccCeeecCHHHHHHHHHHcCCEEEEeccc
Confidence 99999999999999999999999855433211 112233457999999999999999887663
No 75
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=99.59 E-value=3.9e-14 Score=123.79 Aligned_cols=125 Identities=15% Similarity=0.125 Sum_probs=96.2
Q ss_pred ccCCCccHHHHHHHhcCCC-CCCeEEEEcCCcchhHHHhhC--CCCeEEEEeCChHHHHHHHHHhhcCCCC--cceEEEE
Q 024008 89 WDIGQPAPIIVHLHQSGAL-PKGRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNA--KFVSFLK 163 (274)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~-~~~~vLDiG~G~G~~~~~l~~--~~~~v~~iD~s~~~~~~a~~~~~~~~~~--~~v~~~~ 163 (274)
|........-.-++..... ...+|||+|||+|..+..+++ +..+|+++|.|+.+++.+++++..++.. .+++++.
T Consensus 208 Fs~~~LD~GtrllL~~lp~~~~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~ 287 (378)
T PRK15001 208 FSRTGLDIGARFFMQHLPENLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMI 287 (378)
T ss_pred cCCCCcChHHHHHHHhCCcccCCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEE
Confidence 4433333333444444432 236999999999999999987 5679999999999999999998766432 3689999
Q ss_pred cccCCCCCCCCeeEEEeccccccc---ChhHHHHHHHHHHhcccCCcEEEEEE
Q 024008 164 ADFFTWCPTELFDLIFDYTFFCAI---EPEMRAAWAQKIKDFLKPDGELITLM 213 (274)
Q Consensus 164 ~d~~~~~~~~~fD~v~~~~~~~~~---~~~~~~~~l~~l~~~L~~gG~l~~~~ 213 (274)
.|.....+..+||+|+++.+|+.. ++.....++..+.++|+|||.++++.
T Consensus 288 ~D~l~~~~~~~fDlIlsNPPfh~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV~ 340 (378)
T PRK15001 288 NNALSGVEPFRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIVA 340 (378)
T ss_pred ccccccCCCCCEEEEEECcCcccCccCCHHHHHHHHHHHHHhcccCCEEEEEE
Confidence 998775555689999999888653 33456788999999999999999885
No 76
>PRK04266 fibrillarin; Provisional
Probab=99.59 E-value=5.7e-14 Score=115.01 Aligned_cols=135 Identities=20% Similarity=0.222 Sum_probs=95.6
Q ss_pred CCCCCeEEEEcCCcchhHHHhhCC--CCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCC----CCCCCeeEEE
Q 024008 106 ALPKGRALVPGCGTGYDVVAMASP--ERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW----CPTELFDLIF 179 (274)
Q Consensus 106 ~~~~~~vLDiG~G~G~~~~~l~~~--~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~----~~~~~fD~v~ 179 (274)
..++.+|||+|||+|..+..+++. ..+|+++|+++.+++.+.+++... .++.++.+|+..+ ...++||+|+
T Consensus 70 i~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~~---~nv~~i~~D~~~~~~~~~l~~~~D~i~ 146 (226)
T PRK04266 70 IKKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEER---KNIIPILADARKPERYAHVVEKVDVIY 146 (226)
T ss_pred CCCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhhc---CCcEEEECCCCCcchhhhccccCCEEE
Confidence 345679999999999999999883 358999999999999887776543 4689999998652 1135699998
Q ss_pred ecccccccChhHHHHHHHHHHhcccCCcEEEEEEcc-CCCCCCCCCcccCHHHHHHHHhcCCCcEEEEeec
Q 024008 180 DYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFP-ISDHVGGPPYKVSVSDYEEVLQPMGFQAISIVDN 249 (274)
Q Consensus 180 ~~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Gf~~~~~~~~ 249 (274)
+... ++.....+++++.++|||||.+++.... ..+... .+... .++..++++++||+.+...+.
T Consensus 147 ~d~~----~p~~~~~~L~~~~r~LKpGG~lvI~v~~~~~d~~~-~~~~~-~~~~~~~l~~aGF~~i~~~~l 211 (226)
T PRK04266 147 QDVA----QPNQAEIAIDNAEFFLKDGGYLLLAIKARSIDVTK-DPKEI-FKEEIRKLEEGGFEILEVVDL 211 (226)
T ss_pred ECCC----ChhHHHHHHHHHHHhcCCCcEEEEEEecccccCcC-CHHHH-HHHHHHHHHHcCCeEEEEEcC
Confidence 5322 1223345689999999999999984322 111111 11111 234569999999999988774
No 77
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=99.58 E-value=5.6e-15 Score=124.16 Aligned_cols=106 Identities=24% Similarity=0.317 Sum_probs=85.9
Q ss_pred CCCeEEEEcCCcchh----HHHhhC-------CCCeEEEEeCChHHHHHHHHHhhcC-----------------------
Q 024008 108 PKGRALVPGCGTGYD----VVAMAS-------PERYVVGLEISDIAIKKAEELSSSL----------------------- 153 (274)
Q Consensus 108 ~~~~vLDiG~G~G~~----~~~l~~-------~~~~v~~iD~s~~~~~~a~~~~~~~----------------------- 153 (274)
++.+|+|+|||+|.. ++.+++ .+.+|+|+|+|+.+++.|++.....
T Consensus 99 ~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~~ 178 (264)
T smart00138 99 RRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKYR 178 (264)
T ss_pred CCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeEE
Confidence 346999999999974 344433 1468999999999999999864210
Q ss_pred ---CCCcceEEEEcccCCCC-CCCCeeEEEecccccccChhHHHHHHHHHHhcccCCcEEEEEE
Q 024008 154 ---PNAKFVSFLKADFFTWC-PTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLM 213 (274)
Q Consensus 154 ---~~~~~v~~~~~d~~~~~-~~~~fD~v~~~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~ 213 (274)
....+|+|.++|+.+.. +.++||+|+|.++++|++++....++.+++++|+|||++++..
T Consensus 179 v~~~ir~~V~F~~~dl~~~~~~~~~fD~I~crnvl~yf~~~~~~~~l~~l~~~L~pGG~L~lg~ 242 (264)
T smart00138 179 VKPELKERVRFAKHNLLAESPPLGDFDLIFCRNVLIYFDEPTQRKLLNRFAEALKPGGYLFLGH 242 (264)
T ss_pred EChHHhCcCEEeeccCCCCCCccCCCCEEEechhHHhCCHHHHHHHHHHHHHHhCCCeEEEEEC
Confidence 01246899999999844 4789999999999999988888899999999999999999865
No 78
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=99.58 E-value=2.2e-13 Score=119.33 Aligned_cols=127 Identities=23% Similarity=0.268 Sum_probs=99.2
Q ss_pred CCCeEEEEcCCcchhHHHhhC--CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCC-C-CCCCeeEEEeccc
Q 024008 108 PKGRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW-C-PTELFDLIFDYTF 183 (274)
Q Consensus 108 ~~~~vLDiG~G~G~~~~~l~~--~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~-~~~~fD~v~~~~~ 183 (274)
++.+|||+|||+|..+..++. ++.+++++|+|+.+++.|+++....+ .+++++.+|+++. . ..++||+|+++.+
T Consensus 251 ~~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa~~~g--~rV~fi~gDl~e~~l~~~~~FDLIVSNPP 328 (423)
T PRK14966 251 ENGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNAADLG--ARVEFAHGSWFDTDMPSEGKWDIIVSNPP 328 (423)
T ss_pred CCCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC--CcEEEEEcchhccccccCCCccEEEECCC
Confidence 456999999999999998875 57799999999999999999998765 3799999999763 2 2457999999886
Q ss_pred ccccCh-----------------------hHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCC
Q 024008 184 FCAIEP-----------------------EMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMG 240 (274)
Q Consensus 184 ~~~~~~-----------------------~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G 240 (274)
+..-.+ +....+++.+.+.|+|||.+++... . ...+.+.+++++.|
T Consensus 329 YI~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lilEiG-~----------~Q~e~V~~ll~~~G 397 (423)
T PRK14966 329 YIENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLLEHG-F----------DQGAAVRGVLAENG 397 (423)
T ss_pred CCCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEEEEC-c----------cHHHHHHHHHHHCC
Confidence 532100 1235777888899999999876541 1 14678999999999
Q ss_pred CcEEEEe
Q 024008 241 FQAISIV 247 (274)
Q Consensus 241 f~~~~~~ 247 (274)
|..+.+.
T Consensus 398 f~~v~v~ 404 (423)
T PRK14966 398 FSGVETL 404 (423)
T ss_pred CcEEEEE
Confidence 9876664
No 79
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=99.57 E-value=1.2e-14 Score=107.15 Aligned_cols=105 Identities=24% Similarity=0.321 Sum_probs=88.3
Q ss_pred CCeEEEEcCCcchhHHHhhCCC-CeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCC---CCCCCeeEEEecccc
Q 024008 109 KGRALVPGCGTGYDVVAMASPE-RYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW---CPTELFDLIFDYTFF 184 (274)
Q Consensus 109 ~~~vLDiG~G~G~~~~~l~~~~-~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~---~~~~~fD~v~~~~~~ 184 (274)
+.+|||+|||+|..+..+++.+ .+++++|+++.+++.++.++...+...+++++.+|+... .+.++||+|+++..+
T Consensus 1 g~~vlD~~~G~G~~~~~~~~~~~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~D~Iv~npP~ 80 (117)
T PF13659_consen 1 GDRVLDPGCGSGTFLLAALRRGAARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEPLPDGKFDLIVTNPPY 80 (117)
T ss_dssp TEEEEEETSTTCHHHHHHHHHCTCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTCTTT-EEEEEE--ST
T ss_pred CCEEEEcCcchHHHHHHHHHHCCCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhhccCceeEEEEECCCC
Confidence 3589999999999999999877 899999999999999999999988878899999999873 567899999999888
Q ss_pred cccCh------hHHHHHHHHHHhcccCCcEEEEEE
Q 024008 185 CAIEP------EMRAAWAQKIKDFLKPDGELITLM 213 (274)
Q Consensus 185 ~~~~~------~~~~~~l~~l~~~L~~gG~l~~~~ 213 (274)
..... .....+++++.++|+|||.+++..
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~~ 115 (117)
T PF13659_consen 81 GPRSGDKAALRRLYSRFLEAAARLLKPGGVLVFIT 115 (117)
T ss_dssp TSBTT----GGCHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ccccccchhhHHHHHHHHHHHHHHcCCCeEEEEEe
Confidence 75321 234688999999999999988765
No 80
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.57 E-value=1.2e-13 Score=118.36 Aligned_cols=127 Identities=23% Similarity=0.269 Sum_probs=100.8
Q ss_pred CeEEEEcCCcchhHHHhhC--CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCeeEEEecccccc-
Q 024008 110 GRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFCA- 186 (274)
Q Consensus 110 ~~vLDiG~G~G~~~~~l~~--~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~~~~~- 186 (274)
.+|||+|||+|..+..++. ++.+++++|+|+.+++.|++++...++.++++++.+|+.+..+.++||+|+++.++..
T Consensus 135 ~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~l~~~~fDlIvsNPPyi~~ 214 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIERHGLEDRVTLIESDLFAALPGRRYDLIVSNPPYVDA 214 (307)
T ss_pred CEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhhhCCCCCccEEEECCCCCCc
Confidence 6899999999999999887 4679999999999999999999888776789999999977555568999999865421
Q ss_pred -----cCh-----------------hHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcEE
Q 024008 187 -----IEP-----------------EMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAI 244 (274)
Q Consensus 187 -----~~~-----------------~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gf~~~ 244 (274)
+++ +....++..+.+.|+|||.+++... .+.+++.+++...||.-.
T Consensus 215 ~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E~g------------~~~~~~~~~~~~~~~~~~ 282 (307)
T PRK11805 215 EDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVEVG------------NSRVHLEEAYPDVPFTWL 282 (307)
T ss_pred cchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEEEC------------cCHHHHHHHHhhCCCEEE
Confidence 110 2236788999999999999988541 134568888888887665
Q ss_pred EEee
Q 024008 245 SIVD 248 (274)
Q Consensus 245 ~~~~ 248 (274)
....
T Consensus 283 ~~~~ 286 (307)
T PRK11805 283 EFEN 286 (307)
T ss_pred EecC
Confidence 5444
No 81
>PRK05785 hypothetical protein; Provisional
Probab=99.57 E-value=3.1e-14 Score=117.04 Aligned_cols=88 Identities=14% Similarity=0.110 Sum_probs=75.4
Q ss_pred CCCeEEEEcCCcchhHHHhhCC-CCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC-CCCCCCeeEEEeccccc
Q 024008 108 PKGRALVPGCGTGYDVVAMASP-ERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT-WCPTELFDLIFDYTFFC 185 (274)
Q Consensus 108 ~~~~vLDiG~G~G~~~~~l~~~-~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~~~~~fD~v~~~~~~~ 185 (274)
++.+|||+|||||..+..+++. +.+|+|+|+|+++++.|++.. .++++|+.. +.++++||+|++..+++
T Consensus 51 ~~~~VLDlGcGtG~~~~~l~~~~~~~v~gvD~S~~Ml~~a~~~~---------~~~~~d~~~lp~~d~sfD~v~~~~~l~ 121 (226)
T PRK05785 51 RPKKVLDVAAGKGELSYHFKKVFKYYVVALDYAENMLKMNLVAD---------DKVVGSFEALPFRDKSFDVVMSSFALH 121 (226)
T ss_pred CCCeEEEEcCCCCHHHHHHHHhcCCEEEEECCCHHHHHHHHhcc---------ceEEechhhCCCCCCCEEEEEecChhh
Confidence 4679999999999999999886 679999999999999998642 356788877 55678999999999999
Q ss_pred ccChhHHHHHHHHHHhcccCC
Q 024008 186 AIEPEMRAAWAQKIKDFLKPD 206 (274)
Q Consensus 186 ~~~~~~~~~~l~~l~~~L~~g 206 (274)
+++ +...+++++.++|+|.
T Consensus 122 ~~~--d~~~~l~e~~RvLkp~ 140 (226)
T PRK05785 122 ASD--NIEKVIAEFTRVSRKQ 140 (226)
T ss_pred ccC--CHHHHHHHHHHHhcCc
Confidence 885 4567999999999994
No 82
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=99.57 E-value=1.1e-13 Score=111.68 Aligned_cols=123 Identities=19% Similarity=0.171 Sum_probs=96.7
Q ss_pred CCCCCeEEEEcCCcchhHHHhhC---CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCC--CCCCeeEEEe
Q 024008 106 ALPKGRALVPGCGTGYDVVAMAS---PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC--PTELFDLIFD 180 (274)
Q Consensus 106 ~~~~~~vLDiG~G~G~~~~~l~~---~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--~~~~fD~v~~ 180 (274)
..++.+|||+|||+|..+..+++ ++.+|+++|+++.+++.+++++...++.+++.++.+|..+.. ..+.||.|++
T Consensus 38 ~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~l~~~~~~~D~V~~ 117 (198)
T PRK00377 38 LRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEILFTINEKFDRIFI 117 (198)
T ss_pred CCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhhhHhhcCCCCCEEEE
Confidence 34568999999999999988765 346999999999999999999888775568999999987632 2368999997
Q ss_pred cccccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcE
Q 024008 181 YTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQA 243 (274)
Q Consensus 181 ~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gf~~ 243 (274)
.... .....+++.+.+.|+|||++++..... .+..+..+.++++||..
T Consensus 118 ~~~~-----~~~~~~l~~~~~~LkpgG~lv~~~~~~----------~~~~~~~~~l~~~g~~~ 165 (198)
T PRK00377 118 GGGS-----EKLKEIISASWEIIKKGGRIVIDAILL----------ETVNNALSALENIGFNL 165 (198)
T ss_pred CCCc-----ccHHHHHHHHHHHcCCCcEEEEEeecH----------HHHHHHHHHHHHcCCCe
Confidence 5421 234678899999999999998744211 14678888999999943
No 83
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=99.57 E-value=1.7e-13 Score=116.72 Aligned_cols=127 Identities=23% Similarity=0.297 Sum_probs=100.1
Q ss_pred CeEEEEcCCcchhHHHhhC--CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCeeEEEeccccccc
Q 024008 110 GRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFCAI 187 (274)
Q Consensus 110 ~~vLDiG~G~G~~~~~l~~--~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~~~~~~ 187 (274)
.+|||+|||+|..+..++. ++.+++++|+++.+++.|++++...+..++++|+.+|+.+..+.++||+|+++..+...
T Consensus 116 ~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~~~~~~~~~fDlIvsNPPyi~~ 195 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNLFEPLAGQKIDIIVSNPPYIDE 195 (284)
T ss_pred CEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhccCcCCCccEEEECCCCCCc
Confidence 6899999999999999987 45799999999999999999998877766799999999886555589999998544221
Q ss_pred C------------h-----------hHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHh-cCCCcE
Q 024008 188 E------------P-----------EMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQ-PMGFQA 243 (274)
Q Consensus 188 ~------------~-----------~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~Gf~~ 243 (274)
. + +....++..+.++|+|||++++..... ..+.+.+++. ..||..
T Consensus 196 ~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e~g~~-----------q~~~~~~~~~~~~~~~~ 264 (284)
T TIGR00536 196 EDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCEIGNW-----------QQKSLKELLRIKFTWYD 264 (284)
T ss_pred chhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEEECcc-----------HHHHHHHHHHhcCCCce
Confidence 0 0 135678899999999999988766211 3567788888 468876
Q ss_pred EEEe
Q 024008 244 ISIV 247 (274)
Q Consensus 244 ~~~~ 247 (274)
+.+.
T Consensus 265 ~~~~ 268 (284)
T TIGR00536 265 VENG 268 (284)
T ss_pred eEEe
Confidence 6553
No 84
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=99.57 E-value=6.3e-14 Score=121.77 Aligned_cols=128 Identities=16% Similarity=0.100 Sum_probs=103.6
Q ss_pred CCCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCC-CCCCCeeEEEeccccc
Q 024008 107 LPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW-CPTELFDLIFDYTFFC 185 (274)
Q Consensus 107 ~~~~~vLDiG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~~~~~fD~v~~~~~~~ 185 (274)
.++.+|||+|||+|..+..++..+.+++|+|+++.++..++.++...+..+ +.+..+|+.+. .+.+.||+|+++.++.
T Consensus 181 ~~g~~vLDp~cGtG~~lieaa~~~~~v~g~Di~~~~~~~a~~nl~~~g~~~-i~~~~~D~~~l~~~~~~~D~Iv~dPPyg 259 (329)
T TIGR01177 181 TEGDRVLDPFCGTGGFLIEAGLMGAKVIGCDIDWKMVAGARINLEHYGIED-FFVKRGDATKLPLSSESVDAIATDPPYG 259 (329)
T ss_pred CCcCEEEECCCCCCHHHHHHHHhCCeEEEEcCCHHHHHHHHHHHHHhCCCC-CeEEecchhcCCcccCCCCEEEECCCCc
Confidence 456799999999999999888889999999999999999999998877654 88999999883 3457899999987764
Q ss_pred cc-------ChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcEEEEeec
Q 024008 186 AI-------EPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAISIVDN 249 (274)
Q Consensus 186 ~~-------~~~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gf~~~~~~~~ 249 (274)
.. ..+....+++.+.+.|+|||++++... +..++.++++.+|| ++.....
T Consensus 260 ~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~-------------~~~~~~~~~~~~g~-i~~~~~~ 316 (329)
T TIGR01177 260 RSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYAVP-------------TRIDLESLAEDAFR-VVKRFEV 316 (329)
T ss_pred CcccccCCchHHHHHHHHHHHHHHccCCcEEEEEEc-------------CCCCHHHHHhhcCc-chheeee
Confidence 31 113357899999999999999888762 23366778999999 7665553
No 85
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.56 E-value=6e-14 Score=113.79 Aligned_cols=105 Identities=21% Similarity=0.132 Sum_probs=85.0
Q ss_pred HHhcCC-CCCCeEEEEcCCcchhHHHhhC---CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCC-CCCCCe
Q 024008 101 LHQSGA-LPKGRALVPGCGTGYDVVAMAS---PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW-CPTELF 175 (274)
Q Consensus 101 ~~~~~~-~~~~~vLDiG~G~G~~~~~l~~---~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~~~~~f 175 (274)
+++.+. .++.+|||+|||+|..+..+++ .+.+|+++|+++++++.|++++...+..++++++.+|..+. ....+|
T Consensus 64 ~~~~l~~~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~~~~~~f 143 (205)
T PRK13944 64 MCELIEPRPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGLEKHAPF 143 (205)
T ss_pred HHHhcCCCCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccCCccCCCc
Confidence 334333 3557999999999999988876 24699999999999999999998877666799999999873 334689
Q ss_pred eEEEecccccccChhHHHHHHHHHHhcccCCcEEEEEE
Q 024008 176 DLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLM 213 (274)
Q Consensus 176 D~v~~~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~ 213 (274)
|+|++..++.+++ +++.+.|+|||++++..
T Consensus 144 D~Ii~~~~~~~~~--------~~l~~~L~~gG~lvi~~ 173 (205)
T PRK13944 144 DAIIVTAAASTIP--------SALVRQLKDGGVLVIPV 173 (205)
T ss_pred cEEEEccCcchhh--------HHHHHhcCcCcEEEEEE
Confidence 9999988877653 46788999999998865
No 86
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=99.56 E-value=1.8e-13 Score=115.87 Aligned_cols=140 Identities=23% Similarity=0.232 Sum_probs=97.4
Q ss_pred CCCeEEEEcCCcchhHHHhhCC-----CCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC-CCCCCCeeEEEec
Q 024008 108 PKGRALVPGCGTGYDVVAMASP-----ERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT-WCPTELFDLIFDY 181 (274)
Q Consensus 108 ~~~~vLDiG~G~G~~~~~l~~~-----~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~~~~~fD~v~~~ 181 (274)
+..+|||+|||+|..+..+++. +..++|+|+|+.++..|+++. +++.+.++|+.+ +.++++||+|++.
T Consensus 85 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~------~~~~~~~~d~~~lp~~~~sfD~I~~~ 158 (272)
T PRK11088 85 KATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRY------PQVTFCVASSHRLPFADQSLDAIIRI 158 (272)
T ss_pred CCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhC------CCCeEEEeecccCCCcCCceeEEEEe
Confidence 4478999999999999888752 247999999999999998765 358899999887 4566799999975
Q ss_pred ccccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCC------C-CCCCcccCHHHHHHHHhcCCCcEEEEeecccccC
Q 024008 182 TFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDH------V-GGPPYKVSVSDYEEVLQPMGFQAISIVDNKLAIG 254 (274)
Q Consensus 182 ~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~------~-~~~~~~~~~~~~~~~~~~~Gf~~~~~~~~~~~~~ 254 (274)
... ..+.++.++|+|||++++...+.... . .....+.... ....||+++..+.....+.
T Consensus 159 ~~~---------~~~~e~~rvLkpgG~li~~~p~~~~l~el~~~~~~~~~~~~~~~-----~~~~gF~~~~~~~~~~~~~ 224 (272)
T PRK11088 159 YAP---------CKAEELARVVKPGGIVITVTPGPRHLFELKGLIYDEVRLHAPEA-----EQLEGFELQHSERLAYPMR 224 (272)
T ss_pred cCC---------CCHHHHHhhccCCCEEEEEeCCCcchHHHHHHhcccccccccch-----hhccCCCeeeEEEEEEEEE
Confidence 431 13478999999999999987554321 0 0111111111 1235899888887666665
Q ss_pred CccchhHHHHhhhhh
Q 024008 255 PRKGREKLGRWKRSV 269 (274)
Q Consensus 255 ~~~~~~~~~~~~~~~ 269 (274)
. ++.+.+. |.++.
T Consensus 225 l-~~~~~~~-ll~mt 237 (272)
T PRK11088 225 L-TGSEAVA-LLQMT 237 (272)
T ss_pred e-CHHHHHH-HHcCC
Confidence 4 3444444 66654
No 87
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=99.56 E-value=1.3e-13 Score=118.17 Aligned_cols=104 Identities=21% Similarity=0.197 Sum_probs=82.2
Q ss_pred CCCeEEEEcCCcchhHHHhhCC---CCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCC--CCCC----CeeEE
Q 024008 108 PKGRALVPGCGTGYDVVAMASP---ERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW--CPTE----LFDLI 178 (274)
Q Consensus 108 ~~~~vLDiG~G~G~~~~~l~~~---~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--~~~~----~fD~v 178 (274)
++.+|||+|||+|..+..+++. +.+|+++|+|+++++.+++++....-..++.++++|+.+. .+.. ...++
T Consensus 63 ~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~~~~~~~~~~~~~~~ 142 (301)
T TIGR03438 63 AGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVHGICADFTQPLALPPEPAAGRRLGF 142 (301)
T ss_pred CCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccchhhhhcccccCCeEEE
Confidence 4579999999999999988874 6899999999999999998876532123577889999762 2221 23345
Q ss_pred EecccccccChhHHHHHHHHHHhcccCCcEEEE
Q 024008 179 FDYTFFCAIEPEMRAAWAQKIKDFLKPDGELIT 211 (274)
Q Consensus 179 ~~~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~ 211 (274)
++..+++++++++...+++++++.|+|||.+++
T Consensus 143 ~~gs~~~~~~~~e~~~~L~~i~~~L~pgG~~li 175 (301)
T TIGR03438 143 FPGSTIGNFTPEEAVAFLRRIRQLLGPGGGLLI 175 (301)
T ss_pred EecccccCCCHHHHHHHHHHHHHhcCCCCEEEE
Confidence 555678888888888999999999999999986
No 88
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.56 E-value=2.7e-13 Score=115.03 Aligned_cols=128 Identities=25% Similarity=0.321 Sum_probs=99.8
Q ss_pred CCCCeEEEEcCCcchhHHHhhC--CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCeeEEEecccc
Q 024008 107 LPKGRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFF 184 (274)
Q Consensus 107 ~~~~~vLDiG~G~G~~~~~l~~--~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~~~ 184 (274)
.++.+|||+|||+|..+..++. +..+++++|+++.+++.++++.. .....++.++.+|+....+.++||+|+++..+
T Consensus 107 ~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~-~~~~~~i~~~~~d~~~~~~~~~fD~Iv~npPy 185 (275)
T PRK09328 107 KEPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAK-HGLGARVEFLQGDWFEPLPGGRFDLIVSNPPY 185 (275)
T ss_pred cCCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHH-hCCCCcEEEEEccccCcCCCCceeEEEECCCc
Confidence 3457999999999999999987 45799999999999999999987 22335799999999875556789999998665
Q ss_pred cccC------h------------------hHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCC
Q 024008 185 CAIE------P------------------EMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMG 240 (274)
Q Consensus 185 ~~~~------~------------------~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G 240 (274)
.... + +....++.++.++|+|||.+++... . ...+++.++++..|
T Consensus 186 ~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e~g-~----------~~~~~~~~~l~~~g 254 (275)
T PRK09328 186 IPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLEIG-Y----------DQGEAVRALLAAAG 254 (275)
T ss_pred CCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEEEC-c----------hHHHHHHHHHHhCC
Confidence 3211 1 1235678888899999999988541 1 13567999999999
Q ss_pred CcEEEE
Q 024008 241 FQAISI 246 (274)
Q Consensus 241 f~~~~~ 246 (274)
|..+.+
T Consensus 255 f~~v~~ 260 (275)
T PRK09328 255 FADVET 260 (275)
T ss_pred CceeEE
Confidence 986555
No 89
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=99.55 E-value=9.9e-14 Score=126.53 Aligned_cols=128 Identities=20% Similarity=0.291 Sum_probs=101.7
Q ss_pred CCeEEEEcCCcchhHHHhhC--CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCeeEEEecccccc
Q 024008 109 KGRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFCA 186 (274)
Q Consensus 109 ~~~vLDiG~G~G~~~~~l~~--~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~~~~~ 186 (274)
+.+|||+|||+|..+..++. ++.+++++|+|+.+++.|+++....++.++++++.+|+....+.++||+|+++..+..
T Consensus 139 ~~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~~~~~~~~~fDlIvsNPPYi~ 218 (506)
T PRK01544 139 FLNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFENIEKQKFDFIVSNPPYIS 218 (506)
T ss_pred CCEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCCccceeeeecchhhhCcCCCccEEEECCCCCC
Confidence 36899999999999998876 5789999999999999999999888777789999999877555568999999865432
Q ss_pred cCh------------------------hHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCc
Q 024008 187 IEP------------------------EMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQ 242 (274)
Q Consensus 187 ~~~------------------------~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gf~ 242 (274)
.+. +....++..+.++|+|||.+++.. +. ...+.+.++++..||.
T Consensus 219 ~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~lEi-g~----------~q~~~v~~~~~~~g~~ 287 (506)
T PRK01544 219 HSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIILEI-GF----------KQEEAVTQIFLDHGYN 287 (506)
T ss_pred chhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEEEE-CC----------chHHHHHHHHHhcCCC
Confidence 110 123567788899999999988754 11 1467889999999998
Q ss_pred EEEEe
Q 024008 243 AISIV 247 (274)
Q Consensus 243 ~~~~~ 247 (274)
.+.+.
T Consensus 288 ~~~~~ 292 (506)
T PRK01544 288 IESVY 292 (506)
T ss_pred ceEEE
Confidence 76654
No 90
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=99.54 E-value=1.3e-13 Score=102.50 Aligned_cols=100 Identities=17% Similarity=0.108 Sum_probs=81.8
Q ss_pred CCCeEEEEcCCcchhHHHhhC--CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCC--CCCCCeeEEEeccc
Q 024008 108 PKGRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW--CPTELFDLIFDYTF 183 (274)
Q Consensus 108 ~~~~vLDiG~G~G~~~~~l~~--~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--~~~~~fD~v~~~~~ 183 (274)
++.+|||+|||+|..+..+++ ++.+++++|+++.+++.++++....+. .+++++.+|+... ...++||.|++...
T Consensus 19 ~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~D~v~~~~~ 97 (124)
T TIGR02469 19 PGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGV-SNIVIVEGDAPEALEDSLPEPDRVFIGGS 97 (124)
T ss_pred CCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCC-CceEEEeccccccChhhcCCCCEEEECCc
Confidence 457999999999999999987 357999999999999999998877654 3689998987642 22368999998664
Q ss_pred ccccChhHHHHHHHHHHhcccCCcEEEEEE
Q 024008 184 FCAIEPEMRAAWAQKIKDFLKPDGELITLM 213 (274)
Q Consensus 184 ~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~ 213 (274)
.. ....+++.+.+.|+|||.+++..
T Consensus 98 ~~-----~~~~~l~~~~~~Lk~gG~li~~~ 122 (124)
T TIGR02469 98 GG-----LLQEILEAIWRRLRPGGRIVLNA 122 (124)
T ss_pred ch-----hHHHHHHHHHHHcCCCCEEEEEe
Confidence 33 33578999999999999998865
No 91
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=99.53 E-value=5.4e-13 Score=112.74 Aligned_cols=125 Identities=26% Similarity=0.311 Sum_probs=99.3
Q ss_pred eEEEEcCCcchhHHHhhCC--CCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCeeEEEecccccccC
Q 024008 111 RALVPGCGTGYDVVAMASP--ERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFCAIE 188 (274)
Q Consensus 111 ~vLDiG~G~G~~~~~l~~~--~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~~~~~~~ 188 (274)
+|||+|||+|..++.++.. .++|+|+|+|+.+++.|++|+..+++ .++.++.+|++..... +||+|++|..+-.-.
T Consensus 113 ~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na~~~~l-~~~~~~~~dlf~~~~~-~fDlIVsNPPYip~~ 190 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAERNGL-VRVLVVQSDLFEPLRG-KFDLIVSNPPYIPAE 190 (280)
T ss_pred cEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHHHHHcCC-ccEEEEeeecccccCC-ceeEEEeCCCCCCCc
Confidence 7999999999999999984 45999999999999999999999987 6677777798876544 999999997753221
Q ss_pred -----h------------------hHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCC-CcEE
Q 024008 189 -----P------------------EMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMG-FQAI 244 (274)
Q Consensus 189 -----~------------------~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G-f~~~ 244 (274)
+ +....++..+.+.|+|||.+++..-.. ..+.+.+++...| |..+
T Consensus 191 ~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le~g~~-----------q~~~v~~~~~~~~~~~~v 259 (280)
T COG2890 191 DPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILEIGLT-----------QGEAVKALFEDTGFFEIV 259 (280)
T ss_pred ccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEEEECCC-----------cHHHHHHHHHhcCCceEE
Confidence 1 123678889999999999888866211 4788999999999 5544
Q ss_pred EEee
Q 024008 245 SIVD 248 (274)
Q Consensus 245 ~~~~ 248 (274)
....
T Consensus 260 ~~~~ 263 (280)
T COG2890 260 ETLK 263 (280)
T ss_pred EEEe
Confidence 4433
No 92
>PHA03411 putative methyltransferase; Provisional
Probab=99.53 E-value=3.1e-13 Score=111.97 Aligned_cols=138 Identities=17% Similarity=0.215 Sum_probs=102.7
Q ss_pred ccHHHHHHHhcCCCCCCeEEEEcCCcchhHHHhhC--CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCC
Q 024008 94 PAPIIVHLHQSGALPKGRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP 171 (274)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~--~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~ 171 (274)
|...+..++.. .....+|||+|||+|..+..++. .+.+++++|+++.+++.++++. ++++++.+|+.....
T Consensus 51 P~~i~~~f~~~-~~~~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n~------~~v~~v~~D~~e~~~ 123 (279)
T PHA03411 51 PEGLAWDFTID-AHCTGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLL------PEAEWITSDVFEFES 123 (279)
T ss_pred CHHHHHHHHhc-cccCCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhC------cCCEEEECchhhhcc
Confidence 34444444322 23457999999999999887766 3579999999999999999875 358899999988655
Q ss_pred CCCeeEEEecccccccChhH------------------HHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcc--cCHHH
Q 024008 172 TELFDLIFDYTFFCAIEPEM------------------RAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYK--VSVSD 231 (274)
Q Consensus 172 ~~~fD~v~~~~~~~~~~~~~------------------~~~~l~~l~~~L~~gG~l~~~~~~~~~~~~~~~~~--~~~~~ 231 (274)
..+||+|+++.++.+.+... +...+.....+|+|+|.+++.-.+. +-|+ .+.++
T Consensus 124 ~~kFDlIIsNPPF~~l~~~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~yss~------~~y~~sl~~~~ 197 (279)
T PHA03411 124 NEKFDVVISNPPFGKINTTDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFAYSGR------PYYDGTMKSNK 197 (279)
T ss_pred cCCCcEEEEcCCccccCchhhhhhhhhccCccccccccHHHHHhhhHheecCCceEEEEEecc------ccccccCCHHH
Confidence 67899999999998764321 2456677788999999766653211 1222 57999
Q ss_pred HHHHHhcCCCcEE
Q 024008 232 YEEVLQPMGFQAI 244 (274)
Q Consensus 232 ~~~~~~~~Gf~~~ 244 (274)
+.++++++||..-
T Consensus 198 y~~~l~~~g~~~~ 210 (279)
T PHA03411 198 YLKWSKQTGLVTY 210 (279)
T ss_pred HHHHHHhcCcEec
Confidence 9999999999763
No 93
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=99.53 E-value=1.3e-13 Score=111.68 Aligned_cols=126 Identities=26% Similarity=0.261 Sum_probs=105.1
Q ss_pred CCCCCeEEEEcCCcchhHHHhhC---CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCeeEEEecc
Q 024008 106 ALPKGRALVPGCGTGYDVVAMAS---PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYT 182 (274)
Q Consensus 106 ~~~~~~vLDiG~G~G~~~~~l~~---~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~ 182 (274)
..++.+|||.|+|+|.++.+|+. +..+|+.+|+.++.++.|++|+...++.+++++..+|+.+....+.||.|+
T Consensus 92 i~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv~~~~~~~~vDav~--- 168 (256)
T COG2519 92 ISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRVTLKLGDVREGIDEEDVDAVF--- 168 (256)
T ss_pred CCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccccceEEEeccccccccccccCEEE---
Confidence 45678999999999999999997 446999999999999999999999888888999999999966566999999
Q ss_pred cccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcEEEEee
Q 024008 183 FFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAISIVD 248 (274)
Q Consensus 183 ~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gf~~~~~~~ 248 (274)
++-++.+++++++.+.|+|||.+++... +.-..+...+.+++.||..++..+
T Consensus 169 ----LDmp~PW~~le~~~~~Lkpgg~~~~y~P----------~veQv~kt~~~l~~~g~~~ie~~E 220 (256)
T COG2519 169 ----LDLPDPWNVLEHVSDALKPGGVVVVYSP----------TVEQVEKTVEALRERGFVDIEAVE 220 (256)
T ss_pred ----EcCCChHHHHHHHHHHhCCCcEEEEEcC----------CHHHHHHHHHHHHhcCccchhhhe
Confidence 4445668999999999999999988772 222456667778888987665544
No 94
>PRK06922 hypothetical protein; Provisional
Probab=99.53 E-value=8.4e-14 Score=127.27 Aligned_cols=106 Identities=18% Similarity=0.226 Sum_probs=88.6
Q ss_pred CCCCeEEEEcCCcchhHHHhhC--CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCC---CCCCCeeEEEec
Q 024008 107 LPKGRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW---CPTELFDLIFDY 181 (274)
Q Consensus 107 ~~~~~vLDiG~G~G~~~~~l~~--~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~---~~~~~fD~v~~~ 181 (274)
.++.+|||+|||+|..+..+++ ++.+++|+|+|+.+++.|+++....+ .++.++++|..+. .++++||+|+++
T Consensus 417 ~~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl~~~g--~~ie~I~gDa~dLp~~fedeSFDvVVsn 494 (677)
T PRK06922 417 IKGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKKQNEG--RSWNVIKGDAINLSSSFEKESVDTIVYS 494 (677)
T ss_pred cCCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcC--CCeEEEEcchHhCccccCCCCEEEEEEc
Confidence 3578999999999999888876 67899999999999999998875544 3588899998763 456789999999
Q ss_pred cccccc-----------ChhHHHHHHHHHHhcccCCcEEEEEEc
Q 024008 182 TFFCAI-----------EPEMRAAWAQKIKDFLKPDGELITLMF 214 (274)
Q Consensus 182 ~~~~~~-----------~~~~~~~~l~~l~~~L~~gG~l~~~~~ 214 (274)
.+++++ +.+....+++++.++|||||.+++.+.
T Consensus 495 ~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D~ 538 (677)
T PRK06922 495 SILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRDG 538 (677)
T ss_pred hHHHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEeC
Confidence 888764 234668899999999999999999874
No 95
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=99.53 E-value=2.6e-13 Score=109.24 Aligned_cols=135 Identities=14% Similarity=0.144 Sum_probs=98.0
Q ss_pred CCCeEEEEcCCcchhHHHhhC-CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC---CCCCCCeeEEEeccc
Q 024008 108 PKGRALVPGCGTGYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT---WCPTELFDLIFDYTF 183 (274)
Q Consensus 108 ~~~~vLDiG~G~G~~~~~l~~-~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~---~~~~~~fD~v~~~~~ 183 (274)
++.+|||+|||+|..+..+++ .+..++|+|+++++++.++.+ +++++.+|+.. ..++++||+|+++.+
T Consensus 13 ~~~~iLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~i~~a~~~--------~~~~~~~d~~~~l~~~~~~sfD~Vi~~~~ 84 (194)
T TIGR02081 13 PGSRVLDLGCGDGELLALLRDEKQVRGYGIEIDQDGVLACVAR--------GVNVIQGDLDEGLEAFPDKSFDYVILSQT 84 (194)
T ss_pred CCCEEEEeCCCCCHHHHHHHhccCCcEEEEeCCHHHHHHHHHc--------CCeEEEEEhhhcccccCCCCcCEEEEhhH
Confidence 457999999999999988876 456889999999999988642 36788888865 234678999999999
Q ss_pred ccccChhHHHHHHHHHHhcccCCcEEEEEEccC--------------CC-C--------CCCCCcccCHHHHHHHHhcCC
Q 024008 184 FCAIEPEMRAAWAQKIKDFLKPDGELITLMFPI--------------SD-H--------VGGPPYKVSVSDYEEVLQPMG 240 (274)
Q Consensus 184 ~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~~~--------------~~-~--------~~~~~~~~~~~~~~~~~~~~G 240 (274)
++++++ ...+++++.+.+++ +++..... .. . ......+.+.+++.++++++|
T Consensus 85 l~~~~d--~~~~l~e~~r~~~~---~ii~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ll~~~G 159 (194)
T TIGR02081 85 LQATRN--PEEILDEMLRVGRH---AIVSFPNFGYWRVRWSILTKGRMPVTGELPYDWYNTPNIHFCTIADFEDLCGELN 159 (194)
T ss_pred hHcCcC--HHHHHHHHHHhCCe---EEEEcCChhHHHHHHHHHhCCccccCCCCCccccCCCCcccCcHHHHHHHHHHCC
Confidence 999853 45677888776553 33321110 00 0 000123468999999999999
Q ss_pred CcEEEEeecccccCC
Q 024008 241 FQAISIVDNKLAIGP 255 (274)
Q Consensus 241 f~~~~~~~~~~~~~~ 255 (274)
|+++..........+
T Consensus 160 f~v~~~~~~~~~~~~ 174 (194)
T TIGR02081 160 LRILDRAAFDVDGRG 174 (194)
T ss_pred CEEEEEEEecccccc
Confidence 999998887654444
No 96
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=99.52 E-value=2.5e-13 Score=107.05 Aligned_cols=127 Identities=17% Similarity=0.210 Sum_probs=99.5
Q ss_pred CCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC--CCCCCCeeEEEecccccc
Q 024008 109 KGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT--WCPTELFDLIFDYTFFCA 186 (274)
Q Consensus 109 ~~~vLDiG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~--~~~~~~fD~v~~~~~~~~ 186 (274)
+.-|||||||+|..+..+..+|..++|+|+|+.|++.|.+..-+ -.++.+|+-. ++.++.||.+++..++++
T Consensus 51 ~~~iLDIGCGsGLSg~vL~~~Gh~wiGvDiSpsML~~a~~~e~e------gdlil~DMG~GlpfrpGtFDg~ISISAvQW 124 (270)
T KOG1541|consen 51 SGLILDIGCGSGLSGSVLSDSGHQWIGVDISPSMLEQAVERELE------GDLILCDMGEGLPFRPGTFDGVISISAVQW 124 (270)
T ss_pred CcEEEEeccCCCcchheeccCCceEEeecCCHHHHHHHHHhhhh------cCeeeeecCCCCCCCCCccceEEEeeeeee
Confidence 47899999999999999999999999999999999999974322 2578888877 677899999999877655
Q ss_pred c---------ChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcEEEEeec
Q 024008 187 I---------EPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAISIVDN 249 (274)
Q Consensus 187 ~---------~~~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gf~~~~~~~~ 249 (274)
+ +..-+..++..++.+|++|++.++-.++.++. ..+.+.+....+||.---+.++
T Consensus 125 LcnA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~QfYpen~~--------q~d~i~~~a~~aGF~GGlvVd~ 188 (270)
T KOG1541|consen 125 LCNADKSLHVPKKRLLRFFGTLYSCLKRGARAVLQFYPENEA--------QIDMIMQQAMKAGFGGGLVVDW 188 (270)
T ss_pred ecccCccccChHHHHHHHhhhhhhhhccCceeEEEecccchH--------HHHHHHHHHHhhccCCceeeec
Confidence 4 12334677889999999999999988766433 4566667777778765444444
No 97
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=99.52 E-value=2.4e-13 Score=106.18 Aligned_cols=134 Identities=17% Similarity=0.196 Sum_probs=102.7
Q ss_pred CCCCeEEEEcCCcchhHHHhhC-CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC---CCCCCCeeEEEecc
Q 024008 107 LPKGRALVPGCGTGYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT---WCPTELFDLIFDYT 182 (274)
Q Consensus 107 ~~~~~vLDiG~G~G~~~~~l~~-~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~---~~~~~~fD~v~~~~ 182 (274)
.++.+|||+|||.|.++..|.+ .+...+|+|++++.+..+..+- +.++++|+.. ..++++||.|+.+.
T Consensus 12 ~pgsrVLDLGCGdG~LL~~L~~~k~v~g~GvEid~~~v~~cv~rG--------v~Viq~Dld~gL~~f~d~sFD~VIlsq 83 (193)
T PF07021_consen 12 EPGSRVLDLGCGDGELLAYLKDEKQVDGYGVEIDPDNVAACVARG--------VSVIQGDLDEGLADFPDQSFDYVILSQ 83 (193)
T ss_pred CCCCEEEecCCCchHHHHHHHHhcCCeEEEEecCHHHHHHHHHcC--------CCEEECCHHHhHhhCCCCCccEEehHh
Confidence 4678999999999999999988 7889999999999988887663 7789999987 56789999999999
Q ss_pred cccccChhHHHHHHHHHHhcccCCcEEEEEEccCC-----------------CC-----CCCCC-cccCHHHHHHHHhcC
Q 024008 183 FFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPIS-----------------DH-----VGGPP-YKVSVSDYEEVLQPM 239 (274)
Q Consensus 183 ~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~~~~-----------------~~-----~~~~~-~~~~~~~~~~~~~~~ 239 (274)
+++++. ....+++++.++ |...+++..+-. .. -.+|+ +..|..++.++.++.
T Consensus 84 tLQ~~~--~P~~vL~EmlRV---gr~~IVsFPNFg~W~~R~~l~~~GrmPvt~~lPy~WYdTPNih~~Ti~DFe~lc~~~ 158 (193)
T PF07021_consen 84 TLQAVR--RPDEVLEEMLRV---GRRAIVSFPNFGHWRNRLQLLLRGRMPVTKALPYEWYDTPNIHLCTIKDFEDLCREL 158 (193)
T ss_pred HHHhHh--HHHHHHHHHHHh---cCeEEEEecChHHHHHHHHHHhcCCCCCCCCCCCcccCCCCcccccHHHHHHHHHHC
Confidence 999984 446777777665 555555442210 00 11122 236999999999999
Q ss_pred CCcEEEEeeccccc
Q 024008 240 GFQAISIVDNKLAI 253 (274)
Q Consensus 240 Gf~~~~~~~~~~~~ 253 (274)
|+++.+-.......
T Consensus 159 ~i~I~~~~~~~~~~ 172 (193)
T PF07021_consen 159 GIRIEERVFLDGGR 172 (193)
T ss_pred CCEEEEEEEEcCCC
Confidence 99998877755443
No 98
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=99.51 E-value=9.4e-13 Score=102.26 Aligned_cols=125 Identities=21% Similarity=0.223 Sum_probs=103.2
Q ss_pred CCCCCeEEEEcCCcchhHHHhhC--CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCC-CeeEEEecc
Q 024008 106 ALPKGRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTE-LFDLIFDYT 182 (274)
Q Consensus 106 ~~~~~~vLDiG~G~G~~~~~l~~--~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~-~fD~v~~~~ 182 (274)
..++.+++|||||||..+..++. +..+++++|-++++++..++|....+ .+|+.++.+|+-+..++. .+|.|+...
T Consensus 32 ~~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg-~~n~~vv~g~Ap~~L~~~~~~daiFIGG 110 (187)
T COG2242 32 PRPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFG-VDNLEVVEGDAPEALPDLPSPDAIFIGG 110 (187)
T ss_pred CCCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhC-CCcEEEEeccchHhhcCCCCCCEEEECC
Confidence 56678999999999999999984 77899999999999999999999998 478999999998854443 799999877
Q ss_pred cccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCC-cEEEEe
Q 024008 183 FFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGF-QAISIV 247 (274)
Q Consensus 183 ~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gf-~~~~~~ 247 (274)
. ..+ +.+++.+...|+|||+++...-.. -+.....+.+++.|+ +++++.
T Consensus 111 g-~~i-----~~ile~~~~~l~~ggrlV~naitl----------E~~~~a~~~~~~~g~~ei~~v~ 160 (187)
T COG2242 111 G-GNI-----EEILEAAWERLKPGGRLVANAITL----------ETLAKALEALEQLGGREIVQVQ 160 (187)
T ss_pred C-CCH-----HHHHHHHHHHcCcCCeEEEEeecH----------HHHHHHHHHHHHcCCceEEEEE
Confidence 6 333 578999999999999999865322 257788889999999 554443
No 99
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.51 E-value=2.4e-13 Score=107.85 Aligned_cols=100 Identities=24% Similarity=0.275 Sum_probs=88.3
Q ss_pred CCCCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC-CCCCCCeeEEEecccc
Q 024008 106 ALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT-WCPTELFDLIFDYTFF 184 (274)
Q Consensus 106 ~~~~~~vLDiG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~~~~~fD~v~~~~~~ 184 (274)
..++.+|||||||+|+.+..+++...+|+.+|..++..+.|++++...++. ||.++++|... +....+||.|+.....
T Consensus 70 ~~~g~~VLEIGtGsGY~aAvla~l~~~V~siEr~~~L~~~A~~~L~~lg~~-nV~v~~gDG~~G~~~~aPyD~I~Vtaaa 148 (209)
T COG2518 70 LKPGDRVLEIGTGSGYQAAVLARLVGRVVSIERIEELAEQARRNLETLGYE-NVTVRHGDGSKGWPEEAPYDRIIVTAAA 148 (209)
T ss_pred CCCCCeEEEECCCchHHHHHHHHHhCeEEEEEEcHHHHHHHHHHHHHcCCC-ceEEEECCcccCCCCCCCcCEEEEeecc
Confidence 456689999999999999999997679999999999999999999999875 49999999988 5666899999998888
Q ss_pred cccChhHHHHHHHHHHhcccCCcEEEEEEc
Q 024008 185 CAIEPEMRAAWAQKIKDFLKPDGELITLMF 214 (274)
Q Consensus 185 ~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~ 214 (274)
..+| +.+.+.|++||++++...
T Consensus 149 ~~vP--------~~Ll~QL~~gGrlv~PvG 170 (209)
T COG2518 149 PEVP--------EALLDQLKPGGRLVIPVG 170 (209)
T ss_pred CCCC--------HHHHHhcccCCEEEEEEc
Confidence 8776 457888999999999774
No 100
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=99.50 E-value=1.5e-13 Score=110.53 Aligned_cols=128 Identities=20% Similarity=0.188 Sum_probs=96.5
Q ss_pred CCCeEEEEcCCcchhHHHhhC--CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC----CCCCCCeeEEEec
Q 024008 108 PKGRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT----WCPTELFDLIFDY 181 (274)
Q Consensus 108 ~~~~vLDiG~G~G~~~~~l~~--~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~----~~~~~~fD~v~~~ 181 (274)
...+|||||||+|..+..+++ +..+++|+|+++.+++.|+++....++. +++++.+|+.. ..+.+.+|.|+++
T Consensus 16 ~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~l~-ni~~i~~d~~~~~~~~~~~~~~d~v~~~ 94 (194)
T TIGR00091 16 KAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLGLK-NLHVLCGDANELLDKFFPDGSLSKVFLN 94 (194)
T ss_pred CCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhCCC-CEEEEccCHHHHHHhhCCCCceeEEEEE
Confidence 346899999999999998887 5679999999999999999998877664 79999999975 2345689999987
Q ss_pred ccccccChhH------HHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCC-CcEEEE
Q 024008 182 TFFCAIEPEM------RAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMG-FQAISI 246 (274)
Q Consensus 182 ~~~~~~~~~~------~~~~l~~l~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G-f~~~~~ 246 (274)
....+..... ...+++.+.++|+|||.+++..... ...+++.+.+..+| |..+..
T Consensus 95 ~pdpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~td~~----------~~~~~~~~~~~~~~~f~~~~~ 156 (194)
T TIGR00091 95 FPDPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKTDNE----------PLFEDMLKVLSENDLFENTSK 156 (194)
T ss_pred CCCcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEeCCH----------HHHHHHHHHHHhCCCeEeccc
Confidence 5433221110 1468999999999999998876221 12455666777766 776554
No 101
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.50 E-value=3.3e-13 Score=109.94 Aligned_cols=98 Identities=20% Similarity=0.186 Sum_probs=80.7
Q ss_pred CCCCeEEEEcCCcchhHHHhhC---CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC-CCCCCCeeEEEecc
Q 024008 107 LPKGRALVPGCGTGYDVVAMAS---PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT-WCPTELFDLIFDYT 182 (274)
Q Consensus 107 ~~~~~vLDiG~G~G~~~~~l~~---~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~~~~~fD~v~~~~ 182 (274)
.++.+|||+|||+|..+..+++ .+.+|+++|+++++++.+++++...+. .+++++.+|... ..+.++||+|++..
T Consensus 75 ~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~-~~v~~~~gd~~~~~~~~~~fD~I~~~~ 153 (212)
T PRK13942 75 KEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGY-DNVEVIVGDGTLGYEENAPYDRIYVTA 153 (212)
T ss_pred CCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCC-CCeEEEECCcccCCCcCCCcCEEEECC
Confidence 4568999999999999988876 346999999999999999999987765 479999999876 34457899999877
Q ss_pred cccccChhHHHHHHHHHHhcccCCcEEEEEE
Q 024008 183 FFCAIEPEMRAAWAQKIKDFLKPDGELITLM 213 (274)
Q Consensus 183 ~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~ 213 (274)
....++ ..+.+.|+|||++++..
T Consensus 154 ~~~~~~--------~~l~~~LkpgG~lvi~~ 176 (212)
T PRK13942 154 AGPDIP--------KPLIEQLKDGGIMVIPV 176 (212)
T ss_pred Ccccch--------HHHHHhhCCCcEEEEEE
Confidence 655442 45677899999988865
No 102
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=99.50 E-value=7e-13 Score=115.13 Aligned_cols=102 Identities=20% Similarity=0.261 Sum_probs=85.9
Q ss_pred CCeEEEEcCCcchhHHHhhC--CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCeeEEEecccccc
Q 024008 109 KGRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFCA 186 (274)
Q Consensus 109 ~~~vLDiG~G~G~~~~~l~~--~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~~~~~ 186 (274)
.++|||+|||+|.++..+++ ++.+++++|+++.+++.+++++..+++. .+++..|..... .++||+|+++.+||.
T Consensus 197 ~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~~n~l~--~~~~~~D~~~~~-~~~fDlIvsNPPFH~ 273 (342)
T PRK09489 197 KGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATLAANGLE--GEVFASNVFSDI-KGRFDMIISNPPFHD 273 (342)
T ss_pred CCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCC--CEEEEccccccc-CCCccEEEECCCccC
Confidence 46899999999999999887 4569999999999999999999887653 567788876643 578999999999886
Q ss_pred c---ChhHHHHHHHHHHhcccCCcEEEEEE
Q 024008 187 I---EPEMRAAWAQKIKDFLKPDGELITLM 213 (274)
Q Consensus 187 ~---~~~~~~~~l~~l~~~L~~gG~l~~~~ 213 (274)
. +......++.++.+.|+|||.++++.
T Consensus 274 g~~~~~~~~~~~i~~a~~~LkpgG~L~iVa 303 (342)
T PRK09489 274 GIQTSLDAAQTLIRGAVRHLNSGGELRIVA 303 (342)
T ss_pred CccccHHHHHHHHHHHHHhcCcCCEEEEEE
Confidence 3 23456889999999999999998876
No 103
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=99.49 E-value=4e-13 Score=109.87 Aligned_cols=99 Identities=25% Similarity=0.226 Sum_probs=81.0
Q ss_pred CCCCCeEEEEcCCcchhHHHhhCC---CCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCC-CCCCCeeEEEec
Q 024008 106 ALPKGRALVPGCGTGYDVVAMASP---ERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW-CPTELFDLIFDY 181 (274)
Q Consensus 106 ~~~~~~vLDiG~G~G~~~~~l~~~---~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~~~~~fD~v~~~ 181 (274)
..++.+|||+|||+|..+..+++. ..+|+++|+++++++.|++++...++ ++++++.+|.... ...++||+|++.
T Consensus 75 ~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~-~~v~~~~~d~~~~~~~~~~fD~Ii~~ 153 (215)
T TIGR00080 75 LKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGL-DNVIVIVGDGTQGWEPLAPYDRIYVT 153 (215)
T ss_pred CCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCC-CCeEEEECCcccCCcccCCCCEEEEc
Confidence 345679999999999999988873 34699999999999999999988876 5799999999773 334689999987
Q ss_pred ccccccChhHHHHHHHHHHhcccCCcEEEEEE
Q 024008 182 TFFCAIEPEMRAAWAQKIKDFLKPDGELITLM 213 (274)
Q Consensus 182 ~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~ 213 (274)
....+++ +.+.+.|+|||++++..
T Consensus 154 ~~~~~~~--------~~~~~~L~~gG~lv~~~ 177 (215)
T TIGR00080 154 AAGPKIP--------EALIDQLKEGGILVMPV 177 (215)
T ss_pred CCccccc--------HHHHHhcCcCcEEEEEE
Confidence 6655442 45788999999998865
No 104
>PTZ00146 fibrillarin; Provisional
Probab=99.49 E-value=6.9e-13 Score=111.10 Aligned_cols=132 Identities=17% Similarity=0.146 Sum_probs=93.2
Q ss_pred CCCCeEEEEcCCcchhHHHhhCC---CCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCC----CCCCeeEEE
Q 024008 107 LPKGRALVPGCGTGYDVVAMASP---ERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC----PTELFDLIF 179 (274)
Q Consensus 107 ~~~~~vLDiG~G~G~~~~~l~~~---~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~----~~~~fD~v~ 179 (274)
.++.+|||+|||+|.++..+++. ...|+++|+++.+.+...+.+... .++.++..|+..+. +.+.||+|+
T Consensus 131 kpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r---~NI~~I~~Da~~p~~y~~~~~~vDvV~ 207 (293)
T PTZ00146 131 KPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKR---PNIVPIIEDARYPQKYRMLVPMVDVIF 207 (293)
T ss_pred CCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhc---CCCEEEECCccChhhhhcccCCCCEEE
Confidence 45679999999999999999883 358999999987665544443322 46889999986531 345799999
Q ss_pred ecccccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHH----HHHHhcCCCcEEEEeecc
Q 024008 180 DYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDY----EEVLQPMGFQAISIVDNK 250 (274)
Q Consensus 180 ~~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~Gf~~~~~~~~~ 250 (274)
+... .+++...++.++.+.|||||.+++...... ...++ +++++ .++|+++||+.++..+..
T Consensus 208 ~Dva----~pdq~~il~~na~r~LKpGG~~vI~ika~~-id~g~----~pe~~f~~ev~~L~~~GF~~~e~v~L~ 273 (293)
T PTZ00146 208 ADVA----QPDQARIVALNAQYFLKNGGHFIISIKANC-IDSTA----KPEVVFASEVQKLKKEGLKPKEQLTLE 273 (293)
T ss_pred EeCC----CcchHHHHHHHHHHhccCCCEEEEEEeccc-cccCC----CHHHHHHHHHHHHHHcCCceEEEEecC
Confidence 8763 234555677789999999999999432222 22222 33333 488999999988777643
No 105
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=99.48 E-value=2.2e-13 Score=106.32 Aligned_cols=137 Identities=21% Similarity=0.277 Sum_probs=104.0
Q ss_pred CeEEEEcCCcchhHHHhhC-CCCeEEEEeCChHHHHHHHHHhhcCCCCcceE-EEEcccCCC--CCCCCeeEEEeccccc
Q 024008 110 GRALVPGCGTGYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVS-FLKADFFTW--CPTELFDLIFDYTFFC 185 (274)
Q Consensus 110 ~~vLDiG~G~G~~~~~l~~-~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~-~~~~d~~~~--~~~~~fD~v~~~~~~~ 185 (274)
..|||+|||||.+-.+.-- ++..|+++|.++.+-+.+.+.+.++. -.++. |+.++..+. .++.+||.|++..+++
T Consensus 78 ~~vLEvgcGtG~Nfkfy~~~p~~svt~lDpn~~mee~~~ks~~E~k-~~~~~~fvva~ge~l~~l~d~s~DtVV~TlvLC 156 (252)
T KOG4300|consen 78 GDVLEVGCGTGANFKFYPWKPINSVTCLDPNEKMEEIADKSAAEKK-PLQVERFVVADGENLPQLADGSYDTVVCTLVLC 156 (252)
T ss_pred cceEEecccCCCCcccccCCCCceEEEeCCcHHHHHHHHHHHhhcc-CcceEEEEeechhcCcccccCCeeeEEEEEEEe
Confidence 5789999999999877654 88899999999999999998887763 24566 999999884 4789999999999999
Q ss_pred ccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCC---------CCCCcc------cCHHHHHHHHhcCCCcEEEEeec
Q 024008 186 AIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHV---------GGPPYK------VSVSDYEEVLQPMGFQAISIVDN 249 (274)
Q Consensus 186 ~~~~~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~~---------~~~~~~------~~~~~~~~~~~~~Gf~~~~~~~~ 249 (274)
... +..+.+.++.++|+|||++++.++....-. ..+.++ .=..+..+.++.+.|...+....
T Consensus 157 Sve--~~~k~L~e~~rlLRpgG~iifiEHva~~y~~~n~i~q~v~ep~~~~~~dGC~ltrd~~e~Leda~f~~~~~kr~ 233 (252)
T KOG4300|consen 157 SVE--DPVKQLNEVRRLLRPGGRIIFIEHVAGEYGFWNRILQQVAEPLWHLESDGCVLTRDTGELLEDAEFSIDSCKRF 233 (252)
T ss_pred ccC--CHHHHHHHHHHhcCCCcEEEEEecccccchHHHHHHHHHhchhhheeccceEEehhHHHHhhhcccccchhhcc
Confidence 774 457889999999999999999887654220 001000 11345566777777877665543
No 106
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=99.48 E-value=1.3e-12 Score=109.09 Aligned_cols=126 Identities=17% Similarity=0.184 Sum_probs=97.8
Q ss_pred CeEEEEcCCcchhHHHhhC--CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCC---CCCeeEEEecccc
Q 024008 110 GRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP---TELFDLIFDYTFF 184 (274)
Q Consensus 110 ~~vLDiG~G~G~~~~~l~~--~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~---~~~fD~v~~~~~~ 184 (274)
.+|||+|||+|..+..+++ ++.+++++|+++.+++.|++++..++ ++++.+|+.+..+ .++||+|+++..+
T Consensus 88 ~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~~~~~----~~~~~~D~~~~l~~~~~~~fDlVv~NPPy 163 (251)
T TIGR03704 88 LVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNLADAG----GTVHEGDLYDALPTALRGRVDILAANAPY 163 (251)
T ss_pred CEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC----CEEEEeechhhcchhcCCCEeEEEECCCC
Confidence 5899999999999998876 56799999999999999999987654 4789999876432 3579999999775
Q ss_pred cc------cChh------------------HHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCC
Q 024008 185 CA------IEPE------------------MRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMG 240 (274)
Q Consensus 185 ~~------~~~~------------------~~~~~l~~l~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G 240 (274)
.. ++++ ....++..+.++|+|||++++..... ...++.++++++|
T Consensus 164 ~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~~~~~-----------~~~~v~~~l~~~g 232 (251)
T TIGR03704 164 VPTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVETSER-----------QAPLAVEAFARAG 232 (251)
T ss_pred CCchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECcc-----------hHHHHHHHHHHCC
Confidence 42 1111 13577888889999999999775211 4568899999999
Q ss_pred CcEEEEeecc
Q 024008 241 FQAISIVDNK 250 (274)
Q Consensus 241 f~~~~~~~~~ 250 (274)
|...-....+
T Consensus 233 ~~~~~~~~~~ 242 (251)
T TIGR03704 233 LIARVASSEE 242 (251)
T ss_pred CCceeeEccc
Confidence 9876665543
No 107
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=99.47 E-value=1.1e-12 Score=107.06 Aligned_cols=129 Identities=24% Similarity=0.201 Sum_probs=94.4
Q ss_pred chhHhhhcCCCCccCCC--ccHHHHHH-HhcC-CCCCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhc
Q 024008 77 GWEKCWEEGLTPWDIGQ--PAPIIVHL-HQSG-ALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSS 152 (274)
Q Consensus 77 ~w~~~~~~~~~~~~~~~--~~~~~~~~-~~~~-~~~~~~vLDiG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~ 152 (274)
++...|.....+|.... ..+.+... +... ..++.+|||+|||+|..+..+++...+++++|+++++++.+++++..
T Consensus 43 ~~~~ay~d~~~~~~~~~~~~~p~~~~~l~~~l~~~~~~~VLeiG~GsG~~t~~la~~~~~v~~vd~~~~~~~~a~~~~~~ 122 (212)
T PRK00312 43 FKHKAYENRALPIGCGQTISQPYMVARMTELLELKPGDRVLEIGTGSGYQAAVLAHLVRRVFSVERIKTLQWEAKRRLKQ 122 (212)
T ss_pred HHhcCccCCCccCCCCCeeCcHHHHHHHHHhcCCCCCCEEEEECCCccHHHHHHHHHhCEEEEEeCCHHHHHHHHHHHHH
Confidence 34455655555544332 24444333 3333 34558999999999999988877666999999999999999999887
Q ss_pred CCCCcceEEEEcccCCCC-CCCCeeEEEecccccccChhHHHHHHHHHHhcccCCcEEEEEEc
Q 024008 153 LPNAKFVSFLKADFFTWC-PTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMF 214 (274)
Q Consensus 153 ~~~~~~v~~~~~d~~~~~-~~~~fD~v~~~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~ 214 (274)
.+.. ++++..+|..+.. ..++||+|++...+.++ .+.+.+.|+|||++++...
T Consensus 123 ~~~~-~v~~~~~d~~~~~~~~~~fD~I~~~~~~~~~--------~~~l~~~L~~gG~lv~~~~ 176 (212)
T PRK00312 123 LGLH-NVSVRHGDGWKGWPAYAPFDRILVTAAAPEI--------PRALLEQLKEGGILVAPVG 176 (212)
T ss_pred CCCC-ceEEEECCcccCCCcCCCcCEEEEccCchhh--------hHHHHHhcCCCcEEEEEEc
Confidence 7653 5999999987643 34789999988766544 2457889999999988764
No 108
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=99.47 E-value=1.3e-12 Score=109.03 Aligned_cols=124 Identities=19% Similarity=0.198 Sum_probs=96.5
Q ss_pred ccCCCccHHHHHHHhcCCC-CCCeEEEEcCCcchhHHHhhC--CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcc
Q 024008 89 WDIGQPAPIIVHLHQSGAL-PKGRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKAD 165 (274)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~-~~~~vLDiG~G~G~~~~~l~~--~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d 165 (274)
|.......--.-+++.+.. ...+|||+|||.|.++..+++ +..+++.+|++..+++.|++++..++..+ ..+...|
T Consensus 138 FS~~~lD~GS~lLl~~l~~~~~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~N~~~~-~~v~~s~ 216 (300)
T COG2813 138 FSRDKLDKGSRLLLETLPPDLGGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAANGVEN-TEVWASN 216 (300)
T ss_pred CcCCCcChHHHHHHHhCCccCCCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHHHcCCCc-cEEEEec
Confidence 4444444444445554433 346999999999999999998 55699999999999999999999887643 3778888
Q ss_pred cCCCCCCCCeeEEEeccccccc---ChhHHHHHHHHHHhcccCCcEEEEEEc
Q 024008 166 FFTWCPTELFDLIFDYTFFCAI---EPEMRAAWAQKIKDFLKPDGELITLMF 214 (274)
Q Consensus 166 ~~~~~~~~~fD~v~~~~~~~~~---~~~~~~~~l~~l~~~L~~gG~l~~~~~ 214 (274)
......+ +||+|+++..||.= .....++++....+.|++||.+.++..
T Consensus 217 ~~~~v~~-kfd~IisNPPfh~G~~v~~~~~~~~i~~A~~~L~~gGeL~iVan 267 (300)
T COG2813 217 LYEPVEG-KFDLIISNPPFHAGKAVVHSLAQEIIAAAARHLKPGGELWIVAN 267 (300)
T ss_pred ccccccc-cccEEEeCCCccCCcchhHHHHHHHHHHHHHhhccCCEEEEEEc
Confidence 8775544 99999999999862 223345899999999999999988875
No 109
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=99.46 E-value=6.4e-14 Score=110.94 Aligned_cols=146 Identities=24% Similarity=0.286 Sum_probs=109.7
Q ss_pred HHHHHhcCCCCC-CeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC---CCCCC
Q 024008 98 IVHLHQSGALPK-GRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT---WCPTE 173 (274)
Q Consensus 98 ~~~~~~~~~~~~-~~vLDiG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~---~~~~~ 173 (274)
+.+++......+ .++||+|||||..+..+.....+++|+|+|.+|+++|.++-.- -++.++|... ...++
T Consensus 114 l~emI~~~~~g~F~~~lDLGCGTGL~G~~lR~~a~~ltGvDiS~nMl~kA~eKg~Y------D~L~~Aea~~Fl~~~~~e 187 (287)
T COG4976 114 LAEMIGKADLGPFRRMLDLGCGTGLTGEALRDMADRLTGVDISENMLAKAHEKGLY------DTLYVAEAVLFLEDLTQE 187 (287)
T ss_pred HHHHHHhccCCccceeeecccCcCcccHhHHHHHhhccCCchhHHHHHHHHhccch------HHHHHHHHHHHhhhccCC
Confidence 445555443333 6999999999999999988888999999999999999876422 1233444332 24467
Q ss_pred CeeEEEecccccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCC---CCC--CcccCHHHHHHHHhcCCCcEEEEee
Q 024008 174 LFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHV---GGP--PYKVSVSDYEEVLQPMGFQAISIVD 248 (274)
Q Consensus 174 ~fD~v~~~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~~---~~~--~~~~~~~~~~~~~~~~Gf~~~~~~~ 248 (274)
+||+|.+..|+.++ ..+..++--....|+|||.+.++.-...+.. -++ .|-.+...+..+++..||.++.++.
T Consensus 188 r~DLi~AaDVl~Yl--G~Le~~~~~aa~~L~~gGlfaFSvE~l~~~~~f~l~ps~RyAH~~~YVr~~l~~~Gl~~i~~~~ 265 (287)
T COG4976 188 RFDLIVAADVLPYL--GALEGLFAGAAGLLAPGGLFAFSVETLPDDGGFVLGPSQRYAHSESYVRALLAASGLEVIAIED 265 (287)
T ss_pred cccchhhhhHHHhh--cchhhHHHHHHHhcCCCceEEEEecccCCCCCeecchhhhhccchHHHHHHHHhcCceEEEeec
Confidence 89999999999998 5677889999999999999887653332221 111 2446899999999999999999988
Q ss_pred ccc
Q 024008 249 NKL 251 (274)
Q Consensus 249 ~~~ 251 (274)
...
T Consensus 266 tti 268 (287)
T COG4976 266 TTI 268 (287)
T ss_pred ccc
Confidence 554
No 110
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=99.45 E-value=7.1e-13 Score=110.35 Aligned_cols=100 Identities=24% Similarity=0.330 Sum_probs=86.4
Q ss_pred CeEEEEcCCcchhHHHhhC--CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCeeEEEeccccccc
Q 024008 110 GRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFCAI 187 (274)
Q Consensus 110 ~~vLDiG~G~G~~~~~l~~--~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~~~~~~ 187 (274)
.+|||||+|+|..+..+++ ++.+++.+|. |.+++.+++ .++++++.+|+++..|. +|+|+..+++|++
T Consensus 102 ~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~~~~-------~~rv~~~~gd~f~~~P~--~D~~~l~~vLh~~ 171 (241)
T PF00891_consen 102 KTVVDVGGGSGHFAIALARAYPNLRATVFDL-PEVIEQAKE-------ADRVEFVPGDFFDPLPV--ADVYLLRHVLHDW 171 (241)
T ss_dssp SEEEEET-TTSHHHHHHHHHSTTSEEEEEE--HHHHCCHHH-------TTTEEEEES-TTTCCSS--ESEEEEESSGGGS
T ss_pred cEEEeccCcchHHHHHHHHHCCCCcceeecc-Hhhhhcccc-------ccccccccccHHhhhcc--ccceeeehhhhhc
Confidence 6899999999999999988 8889999998 889999988 37899999999966655 9999999999999
Q ss_pred ChhHHHHHHHHHHhcccCC--cEEEEEEccCCCC
Q 024008 188 EPEMRAAWAQKIKDFLKPD--GELITLMFPISDH 219 (274)
Q Consensus 188 ~~~~~~~~l~~l~~~L~~g--G~l~~~~~~~~~~ 219 (274)
+++....+++++++.|+|| |+|+|.++-..+.
T Consensus 172 ~d~~~~~iL~~~~~al~pg~~g~llI~e~~~~~~ 205 (241)
T PF00891_consen 172 SDEDCVKILRNAAAALKPGKDGRLLIIEMVLPDD 205 (241)
T ss_dssp -HHHHHHHHHHHHHHSEECTTEEEEEEEEEECSS
T ss_pred chHHHHHHHHHHHHHhCCCCCCeEEEEeeccCCC
Confidence 9999999999999999999 9999988765544
No 111
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=99.40 E-value=2.6e-12 Score=106.12 Aligned_cols=102 Identities=17% Similarity=0.234 Sum_probs=84.6
Q ss_pred CCCCeEEEEcCCcchhHHHhhC---CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCC-------CCCCee
Q 024008 107 LPKGRALVPGCGTGYDVVAMAS---PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC-------PTELFD 176 (274)
Q Consensus 107 ~~~~~vLDiG~G~G~~~~~l~~---~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-------~~~~fD 176 (274)
.++.+|||+|||+|..+..++. .+.+++++|+++++++.|++++...++.++++++.+|+.+.. +.++||
T Consensus 67 ~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~~l~~~~~~~~fD 146 (234)
T PLN02781 67 MNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSALDQLLNNDPKPEFD 146 (234)
T ss_pred hCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHhCCCCCCCC
Confidence 4568999999999998887776 356999999999999999999999998889999999998732 246899
Q ss_pred EEEecccccccChhHHHHHHHHHHhcccCCcEEEEEE
Q 024008 177 LIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLM 213 (274)
Q Consensus 177 ~v~~~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~ 213 (274)
+|+.. .+.+....+++.+.+.|+|||.+++-.
T Consensus 147 ~VfiD-----a~k~~y~~~~~~~~~ll~~GG~ii~dn 178 (234)
T PLN02781 147 FAFVD-----ADKPNYVHFHEQLLKLVKVGGIIAFDN 178 (234)
T ss_pred EEEEC-----CCHHHHHHHHHHHHHhcCCCeEEEEEc
Confidence 99853 233556688999999999999988743
No 112
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=99.39 E-value=3.6e-12 Score=120.85 Aligned_cols=135 Identities=22% Similarity=0.164 Sum_probs=104.7
Q ss_pred CCCeEEEEcCCcchhHHHhhCCCC-eEEEEeCChHHHHHHHHHhhcCCCC-cceEEEEcccCCCC--CCCCeeEEEeccc
Q 024008 108 PKGRALVPGCGTGYDVVAMASPER-YVVGLEISDIAIKKAEELSSSLPNA-KFVSFLKADFFTWC--PTELFDLIFDYTF 183 (274)
Q Consensus 108 ~~~~vLDiG~G~G~~~~~l~~~~~-~v~~iD~s~~~~~~a~~~~~~~~~~-~~v~~~~~d~~~~~--~~~~fD~v~~~~~ 183 (274)
++.+|||+|||+|..+..++..|+ +|+++|+|+.+++.|++|+..+++. ++++++.+|+++.. ..++||+|++...
T Consensus 538 ~g~rVLDlf~gtG~~sl~aa~~Ga~~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~l~~~~~~fDlIilDPP 617 (702)
T PRK11783 538 KGKDFLNLFAYTGTASVHAALGGAKSTTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLAWLKEAREQFDLIFIDPP 617 (702)
T ss_pred CCCeEEEcCCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHHHHHHcCCCcCEEEECCC
Confidence 468999999999999999998776 6999999999999999999988875 58999999997732 2468999998765
Q ss_pred ccccC---------hhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcEEEEeeccccc
Q 024008 184 FCAIE---------PEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAISIVDNKLAI 253 (274)
Q Consensus 184 ~~~~~---------~~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gf~~~~~~~~~~~~ 253 (274)
...-. ......++..+.++|+|||.+++..... .++ ...+.+.++||.+..+.....+.
T Consensus 618 ~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~~~~---------~~~--~~~~~~~~~g~~~~~i~~~~~~~ 685 (702)
T PRK11783 618 TFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSNNKR---------GFK--MDEEGLAKLGLKAEEITAKTLPP 685 (702)
T ss_pred CCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEeCCc---------cCC--hhHHHHHhCCCeEEEEecCCCCC
Confidence 32110 1234678888999999999988865322 112 23778888999998888755433
No 113
>PRK07402 precorrin-6B methylase; Provisional
Probab=99.39 E-value=8e-12 Score=100.70 Aligned_cols=125 Identities=16% Similarity=0.122 Sum_probs=89.9
Q ss_pred CCCCeEEEEcCCcchhHHHhhC--CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCC--CCCCCeeEEEecc
Q 024008 107 LPKGRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW--CPTELFDLIFDYT 182 (274)
Q Consensus 107 ~~~~~vLDiG~G~G~~~~~l~~--~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--~~~~~fD~v~~~~ 182 (274)
.++.+|||+|||+|..+..+++ ++.+++++|+++.+++.+++++...+. .+++++.+|+.+. .....+|.++...
T Consensus 39 ~~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~~-~~v~~~~~d~~~~~~~~~~~~d~v~~~~ 117 (196)
T PRK07402 39 EPDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFGV-KNVEVIEGSAPECLAQLAPAPDRVCIEG 117 (196)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCC-CCeEEEECchHHHHhhCCCCCCEEEEEC
Confidence 3557999999999999998875 567999999999999999999887765 4699999998652 1123456665421
Q ss_pred cccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHh---cCCCcEEEEee
Q 024008 183 FFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQ---PMGFQAISIVD 248 (274)
Q Consensus 183 ~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~Gf~~~~~~~ 248 (274)
. .....+++++.+.|+|||++++...... +..+..+.++ ..|++++++..
T Consensus 118 ~------~~~~~~l~~~~~~LkpgG~li~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~ 170 (196)
T PRK07402 118 G------RPIKEILQAVWQYLKPGGRLVATASSLE----------GLYAISEGLAQLQARNIEVVQAAV 170 (196)
T ss_pred C------cCHHHHHHHHHHhcCCCeEEEEEeecHH----------HHHHHHHHHHhcCCCCceEEEEEh
Confidence 1 2346789999999999999998863221 2233445554 44677766543
No 114
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=99.39 E-value=1.2e-11 Score=100.48 Aligned_cols=119 Identities=14% Similarity=0.157 Sum_probs=84.9
Q ss_pred CCCCeEEEEcCCcchhHHHhhCC---CCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCC---------CCCCC
Q 024008 107 LPKGRALVPGCGTGYDVVAMASP---ERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW---------CPTEL 174 (274)
Q Consensus 107 ~~~~~vLDiG~G~G~~~~~l~~~---~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~---------~~~~~ 174 (274)
.++.+|||+|||+|.++..+++. +.+|+++|+++. .. . .+++++++|+... ...++
T Consensus 50 ~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~~---------~~--~-~~v~~i~~D~~~~~~~~~i~~~~~~~~ 117 (209)
T PRK11188 50 KPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILPM---------DP--I-VGVDFLQGDFRDELVLKALLERVGDSK 117 (209)
T ss_pred CCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEecccc---------cC--C-CCcEEEecCCCChHHHHHHHHHhCCCC
Confidence 45679999999999999988773 359999999881 11 1 3589999999873 44678
Q ss_pred eeEEEecccccccChh---------HHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcEEE
Q 024008 175 FDLIFDYTFFCAIEPE---------MRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAIS 245 (274)
Q Consensus 175 fD~v~~~~~~~~~~~~---------~~~~~l~~l~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gf~~~~ 245 (274)
||+|++..+.+..... ....+++.+.++|+|||.+++..+... ...++...++. .|..+.
T Consensus 118 ~D~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~~~~----------~~~~~l~~l~~-~f~~v~ 186 (209)
T PRK11188 118 VQVVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVFQGE----------GFDEYLREIRS-LFTKVK 186 (209)
T ss_pred CCEEecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEecCc----------CHHHHHHHHHh-CceEEE
Confidence 9999998765543211 124688999999999999999775442 23444444433 687776
Q ss_pred Eee
Q 024008 246 IVD 248 (274)
Q Consensus 246 ~~~ 248 (274)
+..
T Consensus 187 ~~K 189 (209)
T PRK11188 187 VRK 189 (209)
T ss_pred EEC
Confidence 643
No 115
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=99.39 E-value=2.4e-11 Score=94.16 Aligned_cols=131 Identities=19% Similarity=0.154 Sum_probs=98.3
Q ss_pred CCCCCeEEEEcCCcchhHHHhhCCCC-eEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCeeEEEecccc
Q 024008 106 ALPKGRALVPGCGTGYDVVAMASPER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFF 184 (274)
Q Consensus 106 ~~~~~~vLDiG~G~G~~~~~l~~~~~-~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~~~ 184 (274)
...+.+|+|+|||||.+++..+..|+ +|+++|+++++++.+++|..+. ..+++|+.+|+.... .++|.++.+..|
T Consensus 43 ~l~g~~V~DlG~GTG~La~ga~~lGa~~V~~vdiD~~a~ei~r~N~~~l--~g~v~f~~~dv~~~~--~~~dtvimNPPF 118 (198)
T COG2263 43 DLEGKTVLDLGAGTGILAIGAALLGASRVLAVDIDPEALEIARANAEEL--LGDVEFVVADVSDFR--GKFDTVIMNPPF 118 (198)
T ss_pred CcCCCEEEEcCCCcCHHHHHHHhcCCcEEEEEecCHHHHHHHHHHHHhh--CCceEEEEcchhhcC--CccceEEECCCC
Confidence 55677899999999999999988886 8999999999999999999874 367999999998654 678999999988
Q ss_pred cccCh-hHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcEEEEeecccccCC
Q 024008 185 CAIEP-EMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAISIVDNKLAIGP 255 (274)
Q Consensus 185 ~~~~~-~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gf~~~~~~~~~~~~~~ 255 (274)
...-. .+ ..++....+.- -.++... .. -+.+-+.+....+|+++........+++.
T Consensus 119 G~~~rhaD-r~Fl~~Ale~s---~vVYsiH-~a----------~~~~f~~~~~~~~G~~v~~~~~~~~~iP~ 175 (198)
T COG2263 119 GSQRRHAD-RPFLLKALEIS---DVVYSIH-KA----------GSRDFVEKFAADLGGTVTHIERARFPIPR 175 (198)
T ss_pred ccccccCC-HHHHHHHHHhh---heEEEee-cc----------ccHHHHHHHHHhcCCeEEEEEEEEEecCc
Confidence 76421 12 23444444432 2333322 11 16889999999999998888766555553
No 116
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=99.38 E-value=3.4e-12 Score=105.24 Aligned_cols=126 Identities=25% Similarity=0.220 Sum_probs=97.5
Q ss_pred CCCCCeEEEEcCCcchhHHHhhC---CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC-CC---CCCCeeEE
Q 024008 106 ALPKGRALVPGCGTGYDVVAMAS---PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT-WC---PTELFDLI 178 (274)
Q Consensus 106 ~~~~~~vLDiG~G~G~~~~~l~~---~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~---~~~~fD~v 178 (274)
..|+.+|||.|+|+|.++..|++ +..+|+.+|+.++.++.|++++...++.+++++...|+.+ .+ ....+|.|
T Consensus 38 i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv~~~g~~~~~~~~~Dav 117 (247)
T PF08704_consen 38 IRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLDDNVTVHHRDVCEEGFDEELESDFDAV 117 (247)
T ss_dssp --TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCCTTEEEEES-GGCG--STT-TTSEEEE
T ss_pred CCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCCCCceeEecceecccccccccCcccEE
Confidence 45778999999999999999987 5669999999999999999999999998899999999975 22 23679999
Q ss_pred EecccccccChhHHHHHHHHHHhcc-cCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcEEEEee
Q 024008 179 FDYTFFCAIEPEMRAAWAQKIKDFL-KPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAISIVD 248 (274)
Q Consensus 179 ~~~~~~~~~~~~~~~~~l~~l~~~L-~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gf~~~~~~~ 248 (274)
+. |-+..+.++..+.++| ++||++++..... .......+.+++.||..+++.+
T Consensus 118 fL-------Dlp~Pw~~i~~~~~~L~~~gG~i~~fsP~i----------eQv~~~~~~L~~~gf~~i~~~E 171 (247)
T PF08704_consen 118 FL-------DLPDPWEAIPHAKRALKKPGGRICCFSPCI----------EQVQKTVEALREHGFTDIETVE 171 (247)
T ss_dssp EE-------ESSSGGGGHHHHHHHE-EEEEEEEEEESSH----------HHHHHHHHHHHHTTEEEEEEEE
T ss_pred EE-------eCCCHHHHHHHHHHHHhcCCceEEEECCCH----------HHHHHHHHHHHHCCCeeeEEEE
Confidence 83 3234467889999999 8999999887322 2456667778889998876655
No 117
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=99.38 E-value=2.1e-12 Score=104.29 Aligned_cols=106 Identities=25% Similarity=0.295 Sum_probs=80.9
Q ss_pred HHHhcC-CCCCCeEEEEcCCcchhHHHhhC---CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC-CCCCCC
Q 024008 100 HLHQSG-ALPKGRALVPGCGTGYDVVAMAS---PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT-WCPTEL 174 (274)
Q Consensus 100 ~~~~~~-~~~~~~vLDiG~G~G~~~~~l~~---~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~~~~~ 174 (274)
.+++.+ ..++.+|||||||+|+.+..++. +...|+++|.++..++.|++++...+. .++.++.+|... .....+
T Consensus 63 ~~l~~L~l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~-~nv~~~~gdg~~g~~~~ap 141 (209)
T PF01135_consen 63 RMLEALDLKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGI-DNVEVVVGDGSEGWPEEAP 141 (209)
T ss_dssp HHHHHTTC-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTT-HSEEEEES-GGGTTGGG-S
T ss_pred HHHHHHhcCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhcc-CceeEEEcchhhccccCCC
Confidence 344444 44668999999999999988887 344799999999999999999987765 479999999877 444578
Q ss_pred eeEEEecccccccChhHHHHHHHHHHhcccCCcEEEEEEc
Q 024008 175 FDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMF 214 (274)
Q Consensus 175 fD~v~~~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~ 214 (274)
||.|++......++ ..+.+.|++||++++...
T Consensus 142 fD~I~v~~a~~~ip--------~~l~~qL~~gGrLV~pi~ 173 (209)
T PF01135_consen 142 FDRIIVTAAVPEIP--------EALLEQLKPGGRLVAPIG 173 (209)
T ss_dssp EEEEEESSBBSS----------HHHHHTEEEEEEEEEEES
T ss_pred cCEEEEeeccchHH--------HHHHHhcCCCcEEEEEEc
Confidence 99999988776554 457888999999998764
No 118
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=99.37 E-value=7.4e-12 Score=110.70 Aligned_cols=132 Identities=18% Similarity=0.092 Sum_probs=97.4
Q ss_pred CCCeEEEEcCCcchhHHHhhCCCC-eEEEEeCChHHHHHHHHHhhcCCCC-cceEEEEcccCCCC-----CCCCeeEEEe
Q 024008 108 PKGRALVPGCGTGYDVVAMASPER-YVVGLEISDIAIKKAEELSSSLPNA-KFVSFLKADFFTWC-----PTELFDLIFD 180 (274)
Q Consensus 108 ~~~~vLDiG~G~G~~~~~l~~~~~-~v~~iD~s~~~~~~a~~~~~~~~~~-~~v~~~~~d~~~~~-----~~~~fD~v~~ 180 (274)
++.+|||+|||+|.++..++..++ +|+++|+++.+++.|++++..+++. .+++++.+|+++.. ..++||+|++
T Consensus 220 ~g~rVLDlfsgtG~~~l~aa~~ga~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~~~~~fDlVil 299 (396)
T PRK15128 220 ENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIVM 299 (396)
T ss_pred CCCeEEEeccCCCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHHHhcCCCCCEEEE
Confidence 467999999999999887666655 9999999999999999999988875 47999999998732 2458999999
Q ss_pred cccccccCh-------hHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHH----hcCCCcEEEEee
Q 024008 181 YTFFCAIEP-------EMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVL----QPMGFQAISIVD 248 (274)
Q Consensus 181 ~~~~~~~~~-------~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~Gf~~~~~~~ 248 (274)
......-+. .....++....++|+|||.++++..+. +++.+++.+++ ..+|-++..+..
T Consensus 300 DPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~scs~---------~~~~~~f~~~v~~aa~~~~~~~~~l~~ 369 (396)
T PRK15128 300 DPPKFVENKSQLMGACRGYKDINMLAIQLLNPGGILLTFSCSG---------LMTSDLFQKIIADAAIDAGRDVQFIEQ 369 (396)
T ss_pred CCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEeCCC---------cCCHHHHHHHHHHHHHHcCCeEEEEEE
Confidence 876532222 124556677889999999999876433 23455555554 444555544443
No 119
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=99.37 E-value=8.4e-12 Score=108.78 Aligned_cols=105 Identities=19% Similarity=0.194 Sum_probs=85.6
Q ss_pred CCCeEEEEcCCcchhHHHhhC--CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC---CCCCCCeeEEEecc
Q 024008 108 PKGRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT---WCPTELFDLIFDYT 182 (274)
Q Consensus 108 ~~~~vLDiG~G~G~~~~~l~~--~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~---~~~~~~fD~v~~~~ 182 (274)
.+..+||||||+|..+..+++ +...++|+|+++.+++.+.+++...++ .++.++.+|+.. ..+++.+|.|+++.
T Consensus 122 ~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~gL-~NV~~i~~DA~~ll~~~~~~s~D~I~lnF 200 (390)
T PRK14121 122 QEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLNL-KNLLIINYDARLLLELLPSNSVEKIFVHF 200 (390)
T ss_pred CCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCC-CcEEEEECCHHHhhhhCCCCceeEEEEeC
Confidence 346999999999999999988 577999999999999999999888776 469999999854 46678999999875
Q ss_pred cccccChhH----HHHHHHHHHhcccCCcEEEEEE
Q 024008 183 FFCAIEPEM----RAAWAQKIKDFLKPDGELITLM 213 (274)
Q Consensus 183 ~~~~~~~~~----~~~~l~~l~~~L~~gG~l~~~~ 213 (274)
...+.-... ...+++.+.++|+|||.+.+..
T Consensus 201 PdPW~KkrHRRlv~~~fL~e~~RvLkpGG~l~l~T 235 (390)
T PRK14121 201 PVPWDKKPHRRVISEDFLNEALRVLKPGGTLELRT 235 (390)
T ss_pred CCCccccchhhccHHHHHHHHHHHcCCCcEEEEEE
Confidence 533211111 1578999999999999988865
No 120
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=99.36 E-value=4e-12 Score=99.00 Aligned_cols=115 Identities=17% Similarity=0.119 Sum_probs=88.8
Q ss_pred EEEeCChHHHHHHHHHhhcC--CCCcceEEEEcccCC-CCCCCCeeEEEecccccccChhHHHHHHHHHHhcccCCcEEE
Q 024008 134 VGLEISDIAIKKAEELSSSL--PNAKFVSFLKADFFT-WCPTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELI 210 (274)
Q Consensus 134 ~~iD~s~~~~~~a~~~~~~~--~~~~~v~~~~~d~~~-~~~~~~fD~v~~~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~ 210 (274)
+|+|+|+++++.|+++.... +...+++++++|+.+ +.++++||+|++..++++++ +...++++++++|||||.++
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~v~~~~~l~~~~--d~~~~l~ei~rvLkpGG~l~ 78 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDLPFDDCEFDAVTMGYGLRNVV--DRLRAMKEMYRVLKPGSRVS 78 (160)
T ss_pred CeEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhCCCCCCCeeEEEecchhhcCC--CHHHHHHHHHHHcCcCeEEE
Confidence 48999999999998776432 223479999999988 45567899999999999885 45788999999999999999
Q ss_pred EEEccCCCCC---------------------CC-C---------CcccCHHHHHHHHhcCCCcEEEEeecc
Q 024008 211 TLMFPISDHV---------------------GG-P---------PYKVSVSDYEEVLQPMGFQAISIVDNK 250 (274)
Q Consensus 211 ~~~~~~~~~~---------------------~~-~---------~~~~~~~~~~~~~~~~Gf~~~~~~~~~ 250 (274)
+.++...... .. . ..+.+.+++.++++++||+.+......
T Consensus 79 i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~yl~~si~~f~~~~el~~ll~~aGF~~~~~~~~~ 149 (160)
T PLN02232 79 ILDFNKSNQSVTTFMQGWMIDNVVVPVATVYDLAKEYEYLKYSINGYLTGEELETLALEAGFSSACHYEIS 149 (160)
T ss_pred EEECCCCChHHHHHHHHHHccchHhhhhHHhCChHHHHhHHHHHHHCcCHHHHHHHHHHcCCCcceEEECc
Confidence 9988654210 00 0 112489999999999999988765543
No 121
>PLN02672 methionine S-methyltransferase
Probab=99.35 E-value=1.6e-11 Score=119.09 Aligned_cols=131 Identities=21% Similarity=0.213 Sum_probs=100.7
Q ss_pred CCeEEEEcCCcchhHHHhhC--CCCeEEEEeCChHHHHHHHHHhhcCCC---------------CcceEEEEcccCCCCC
Q 024008 109 KGRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPN---------------AKFVSFLKADFFTWCP 171 (274)
Q Consensus 109 ~~~vLDiG~G~G~~~~~l~~--~~~~v~~iD~s~~~~~~a~~~~~~~~~---------------~~~v~~~~~d~~~~~~ 171 (274)
+.+|||+|||+|..++.+++ +..+++++|+|+.+++.|++|+..+++ .++++|+.+|+.+...
T Consensus 119 ~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~~ 198 (1082)
T PLN02672 119 DKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYCR 198 (1082)
T ss_pred CCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchhhhcc
Confidence 45899999999999999987 456999999999999999999976532 2579999999988543
Q ss_pred C--CCeeEEEecccccc------cCh------------------------------hHHHHHHHHHHhcccCCcEEEEEE
Q 024008 172 T--ELFDLIFDYTFFCA------IEP------------------------------EMRAAWAQKIKDFLKPDGELITLM 213 (274)
Q Consensus 172 ~--~~fD~v~~~~~~~~------~~~------------------------------~~~~~~l~~l~~~L~~gG~l~~~~ 213 (274)
. .+||+|+++..+.. +++ +....++....++|+|||.+++..
T Consensus 199 ~~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dGL~~yr~i~~~a~~~L~pgG~l~lEi 278 (1082)
T PLN02672 199 DNNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGISVIKPMGIMIFNM 278 (1082)
T ss_pred ccCCceEEEEECCCcCCCcchhhcChhhhhccccccccccCccccccCCCCCCcHHHHHHHHHHHHHHhccCCCEEEEEE
Confidence 3 36999999876421 110 112567888889999999888765
Q ss_pred ccCCCCCCCCCcccCHHHHH-HHHhcCCCcEEEEeecc
Q 024008 214 FPISDHVGGPPYKVSVSDYE-EVLQPMGFQAISIVDNK 250 (274)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~-~~~~~~Gf~~~~~~~~~ 250 (274)
... ..+.+. ++++..||..+.+....
T Consensus 279 G~~-----------q~~~v~~~l~~~~gf~~~~~~~~~ 305 (1082)
T PLN02672 279 GGR-----------PGQAVCERLFERRGFRITKLWQTK 305 (1082)
T ss_pred Ccc-----------HHHHHHHHHHHHCCCCeeEEeeeh
Confidence 211 355677 69999999998777644
No 122
>PHA03412 putative methyltransferase; Provisional
Probab=99.35 E-value=2.1e-11 Score=98.94 Aligned_cols=129 Identities=19% Similarity=0.218 Sum_probs=90.6
Q ss_pred CCCeEEEEcCCcchhHHHhhC-----CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCeeEEEecc
Q 024008 108 PKGRALVPGCGTGYDVVAMAS-----PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYT 182 (274)
Q Consensus 108 ~~~~vLDiG~G~G~~~~~l~~-----~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~ 182 (274)
.+.+|||+|||+|.++..+++ ...+|+++|+++.+++.|+++. .++.++.+|+......++||+|+++.
T Consensus 49 ~~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~------~~~~~~~~D~~~~~~~~~FDlIIsNP 122 (241)
T PHA03412 49 TSGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIV------PEATWINADALTTEFDTLFDMAISNP 122 (241)
T ss_pred CCCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhc------cCCEEEEcchhcccccCCccEEEECC
Confidence 467999999999999998765 2459999999999999999886 34789999998754467899999998
Q ss_pred cccccCh----------hHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcc-----cCHHHHHHHHhcCCCcE
Q 024008 183 FFCAIEP----------EMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYK-----VSVSDYEEVLQPMGFQA 243 (274)
Q Consensus 183 ~~~~~~~----------~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~Gf~~ 243 (274)
.+..... .....++.+..+++++|+. ++-.......-.+.++. .+-..+.++.++.|...
T Consensus 123 PY~~~~~~d~~ar~~g~~~~~~li~~A~~Ll~~G~~-ILP~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (241)
T PHA03412 123 PFGKIKTSDFKGKYTGAEFEYKVIERASQIARQGTF-IIPQMSANFRYSGTHYFRQDESTTSSKCKKFLDETGLEM 197 (241)
T ss_pred CCCCccccccCCcccccHHHHHHHHHHHHHcCCCEE-EeCcccccCcccCccceeeccCcccHHHHHHHHhcCeee
Confidence 8874321 2245688888886666665 44222111111121211 24567778888877654
No 123
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=99.35 E-value=2e-11 Score=96.88 Aligned_cols=138 Identities=20% Similarity=0.133 Sum_probs=103.6
Q ss_pred eEEEEcCCcchhHHHhhC--CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCC-C--------CCCCeeEEE
Q 024008 111 RALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW-C--------PTELFDLIF 179 (274)
Q Consensus 111 ~vLDiG~G~G~~~~~l~~--~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~--------~~~~fD~v~ 179 (274)
+|||||||||..+..+++ ++..+.-.|+++......+......+..+-..-+..|+... . ..+.||.|+
T Consensus 28 ~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~~~w~~~~~~~~~~~~~D~i~ 107 (204)
T PF06080_consen 28 RVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSAPPWPWELPAPLSPESFDAIF 107 (204)
T ss_pred eEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCCCCCccccccccCCCCcceee
Confidence 599999999999999998 77899999999988766666665555433333455666552 1 245899999
Q ss_pred ecccccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCC---------------CCCCCcc-cCHHHHHHHHhcCCCcE
Q 024008 180 DYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDH---------------VGGPPYK-VSVSDYEEVLQPMGFQA 243 (274)
Q Consensus 180 ~~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~---------------~~~~~~~-~~~~~~~~~~~~~Gf~~ 243 (274)
+.+++|.++......++....++|++||.++++..=..+. ...+.+. -+.+++.+++.++|+..
T Consensus 108 ~~N~lHI~p~~~~~~lf~~a~~~L~~gG~L~~YGPF~~~G~~ts~SN~~FD~sLr~rdp~~GiRD~e~v~~lA~~~GL~l 187 (204)
T PF06080_consen 108 CINMLHISPWSAVEGLFAGAARLLKPGGLLFLYGPFNRDGKFTSESNAAFDASLRSRDPEWGIRDIEDVEALAAAHGLEL 187 (204)
T ss_pred ehhHHHhcCHHHHHHHHHHHHHhCCCCCEEEEeCCcccCCEeCCcHHHHHHHHHhcCCCCcCccCHHHHHHHHHHCCCcc
Confidence 9999999888888999999999999999998865221111 1122233 36889999999999987
Q ss_pred EEEee
Q 024008 244 ISIVD 248 (274)
Q Consensus 244 ~~~~~ 248 (274)
++..+
T Consensus 188 ~~~~~ 192 (204)
T PF06080_consen 188 EEDID 192 (204)
T ss_pred Ccccc
Confidence 66544
No 124
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=99.34 E-value=2.3e-11 Score=86.61 Aligned_cols=100 Identities=34% Similarity=0.454 Sum_probs=82.6
Q ss_pred eEEEEcCCcchhHHHhhC-CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCC--CCCCeeEEEeccccccc
Q 024008 111 RALVPGCGTGYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC--PTELFDLIFDYTFFCAI 187 (274)
Q Consensus 111 ~vLDiG~G~G~~~~~l~~-~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--~~~~fD~v~~~~~~~~~ 187 (274)
+|+|+|||.|..+..++. .+.+++++|+++.++..+++..... ...++.++..|+.+.. ..++||+|++..+++++
T Consensus 1 ~ildig~G~G~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~~ 79 (107)
T cd02440 1 RVLDLGCGTGALALALASGPGARVTGVDISPVALELARKAAAAL-LADNVEVLKGDAEELPPEADESFDVIISDPPLHHL 79 (107)
T ss_pred CeEEEcCCccHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhcc-cccceEEEEcChhhhccccCCceEEEEEccceeeh
Confidence 589999999999999987 6679999999999999998543322 2356899999998844 45789999999998874
Q ss_pred ChhHHHHHHHHHHhcccCCcEEEEE
Q 024008 188 EPEMRAAWAQKIKDFLKPDGELITL 212 (274)
Q Consensus 188 ~~~~~~~~l~~l~~~L~~gG~l~~~ 212 (274)
......+++.+.+.+++||.+++.
T Consensus 80 -~~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 80 -VEDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred -hhHHHHHHHHHHHHcCCCCEEEEE
Confidence 356678899999999999998875
No 125
>PLN02476 O-methyltransferase
Probab=99.34 E-value=2.6e-11 Score=101.53 Aligned_cols=102 Identities=16% Similarity=0.148 Sum_probs=86.1
Q ss_pred CCCCCeEEEEcCCcchhHHHhhC---CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCC-------CCCe
Q 024008 106 ALPKGRALVPGCGTGYDVVAMAS---PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP-------TELF 175 (274)
Q Consensus 106 ~~~~~~vLDiG~G~G~~~~~l~~---~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~-------~~~f 175 (274)
..++.+|||+||++|+.+++++. .+.+++++|.+++..+.|++++...|+.++++++.+|+.+..+ .++|
T Consensus 116 ~~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~L~~l~~~~~~~~F 195 (278)
T PLN02476 116 ILGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAESLKSMIQNGEGSSY 195 (278)
T ss_pred hcCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcccCCCC
Confidence 34568999999999999999987 3568999999999999999999999998899999999977221 3589
Q ss_pred eEEEecccccccChhHHHHHHHHHHhcccCCcEEEEE
Q 024008 176 DLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITL 212 (274)
Q Consensus 176 D~v~~~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~ 212 (274)
|+|+.- .++.....+++.+.+.|+|||.+++-
T Consensus 196 D~VFID-----a~K~~Y~~y~e~~l~lL~~GGvIV~D 227 (278)
T PLN02476 196 DFAFVD-----ADKRMYQDYFELLLQLVRVGGVIVMD 227 (278)
T ss_pred CEEEEC-----CCHHHHHHHHHHHHHhcCCCcEEEEe
Confidence 999942 23456788999999999999998874
No 126
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=99.33 E-value=1.1e-11 Score=106.97 Aligned_cols=144 Identities=22% Similarity=0.296 Sum_probs=101.4
Q ss_pred CCCeEEEEcCCcchhHHHhhCCC-CeEEEEeCChHHHHHHHHHhhc---------CCCCcceEEEEcccCC-----CCCC
Q 024008 108 PKGRALVPGCGTGYDVVAMASPE-RYVVGLEISDIAIKKAEELSSS---------LPNAKFVSFLKADFFT-----WCPT 172 (274)
Q Consensus 108 ~~~~vLDiG~G~G~~~~~l~~~~-~~v~~iD~s~~~~~~a~~~~~~---------~~~~~~v~~~~~d~~~-----~~~~ 172 (274)
++.+|||+|||.|+.+.-....+ ..++|+|++...++.|+++... ....-...|+.+|.+. ..++
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~~~ 141 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKAKIKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKLPP 141 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTSSS
T ss_pred CCCeEEEecCCCchhHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhccc
Confidence 56899999999999887776644 5999999999999999999821 1111246788888875 1233
Q ss_pred --CCeeEEEeccccccc--ChhHHHHHHHHHHhcccCCcEEEEEEccCC--------------CC-------------C-
Q 024008 173 --ELFDLIFDYTFFCAI--EPEMRAAWAQKIKDFLKPDGELITLMFPIS--------------DH-------------V- 220 (274)
Q Consensus 173 --~~fD~v~~~~~~~~~--~~~~~~~~l~~l~~~L~~gG~l~~~~~~~~--------------~~-------------~- 220 (274)
.+||+|-|..++|+. +.+....++..+.+.|+|||+++.+..... .. .
T Consensus 142 ~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT~~d~~~i~~~l~~~~~~~~~~~~gN~~y~I~f~~~~ 221 (331)
T PF03291_consen 142 RSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFIGTTPDSDEIVKRLREKKSNSEKKKFGNSVYSIEFDSDD 221 (331)
T ss_dssp TTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE-HHHHHCCHHC-EEECCCSCSETSSEEEEESCCS
T ss_pred cCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEEEecCHHHHHHHHHhhcccccccccCCccEEEEecccC
Confidence 599999999999996 445667899999999999999998664321 00 0
Q ss_pred C----C--------------CCcccCHHHHHHHHhcCCCcEEEEeeccc
Q 024008 221 G----G--------------PPYKVSVSDYEEVLQPMGFQAISIVDNKL 251 (274)
Q Consensus 221 ~----~--------------~~~~~~~~~~~~~~~~~Gf~~~~~~~~~~ 251 (274)
. | +.|.+..+.+.+++++.|++++.......
T Consensus 222 ~~~~fG~~Y~F~L~~~v~~~~EYlV~~~~~~~la~eyGLeLV~~~~F~e 270 (331)
T PF03291_consen 222 FFPPFGAKYDFYLEDAVDDCPEYLVPFDFFVKLAKEYGLELVEKKNFHE 270 (331)
T ss_dssp S--CTTEEEEEEETTCSSCEEEE---HHHHHHHHHHTTEEEEEEEEHHH
T ss_pred CCCCCCcEEEEEecCcCCCCceEEeeHHHHHHHHHHcCCEEEEeCChHH
Confidence 0 1 11335789999999999999998766443
No 127
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=99.33 E-value=2.2e-11 Score=109.97 Aligned_cols=140 Identities=19% Similarity=0.163 Sum_probs=102.4
Q ss_pred CCCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCC-----CCCCeeEEEec
Q 024008 107 LPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC-----PTELFDLIFDY 181 (274)
Q Consensus 107 ~~~~~vLDiG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~~~~fD~v~~~ 181 (274)
.++.+|||+|||+|..+..+++.+.+|+|+|+|+.+++.|++++..++. .+++|+.+|+.+.. ..++||+|++.
T Consensus 296 ~~~~~VLDlgcGtG~~sl~la~~~~~V~gvD~s~~al~~A~~n~~~~~~-~~v~~~~~d~~~~l~~~~~~~~~fD~Vi~d 374 (443)
T PRK13168 296 QPGDRVLDLFCGLGNFTLPLARQAAEVVGVEGVEAMVERARENARRNGL-DNVTFYHANLEEDFTDQPWALGGFDKVLLD 374 (443)
T ss_pred CCCCEEEEEeccCCHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCC-CceEEEEeChHHhhhhhhhhcCCCCEEEEC
Confidence 3457999999999999999998888999999999999999999987766 36999999997532 24579999987
Q ss_pred ccccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcEEEEeecccccCCccchhH
Q 024008 182 TFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAISIVDNKLAIGPRKGREK 261 (274)
Q Consensus 182 ~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gf~~~~~~~~~~~~~~~~~~~~ 261 (274)
.....+ ...++.+.+ ++|++++++.+.+. |...=.+.|.+.||++.++...+. ++.-+..|+
T Consensus 375 PPr~g~-----~~~~~~l~~-~~~~~ivyvSCnp~-----------tlaRDl~~L~~~gY~l~~i~~~Dm-FP~T~HvE~ 436 (443)
T PRK13168 375 PPRAGA-----AEVMQALAK-LGPKRIVYVSCNPA-----------TLARDAGVLVEAGYRLKRAGMLDM-FPHTGHVES 436 (443)
T ss_pred cCCcCh-----HHHHHHHHh-cCCCeEEEEEeChH-----------HhhccHHHHhhCCcEEEEEEEecc-CCCCCcEEE
Confidence 665543 234555555 68999988888433 222223345567999999988653 222234565
Q ss_pred HHHh
Q 024008 262 LGRW 265 (274)
Q Consensus 262 ~~~~ 265 (274)
+.++
T Consensus 437 v~lL 440 (443)
T PRK13168 437 MALF 440 (443)
T ss_pred EEEE
Confidence 5544
No 128
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=99.33 E-value=3.7e-11 Score=99.23 Aligned_cols=140 Identities=18% Similarity=0.197 Sum_probs=112.1
Q ss_pred CCCeEEEEcCCcchhHHHhhC--CC--CeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCC----CCCCCeeEEE
Q 024008 108 PKGRALVPGCGTGYDVVAMAS--PE--RYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW----CPTELFDLIF 179 (274)
Q Consensus 108 ~~~~vLDiG~G~G~~~~~l~~--~~--~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~----~~~~~fD~v~ 179 (274)
.+-+||||.||+|........ +. ..|...|+++..++..++.+.+.++.+.++|.++|+++. ......++++
T Consensus 135 ~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~~~l~~l~p~P~l~i 214 (311)
T PF12147_consen 135 RPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLEDIARFEQGDAFDRDSLAALDPAPTLAI 214 (311)
T ss_pred CceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCCCHhHhhccCCCCCEEE
Confidence 346999999999999887766 32 489999999999999999999999988779999999982 1234579999
Q ss_pred ecccccccCh-hHHHHHHHHHHhcccCCcEEEEEE--ccCCCC---------CCCCC---cccCHHHHHHHHhcCCCcEE
Q 024008 180 DYTFFCAIEP-EMRAAWAQKIKDFLKPDGELITLM--FPISDH---------VGGPP---YKVSVSDYEEVLQPMGFQAI 244 (274)
Q Consensus 180 ~~~~~~~~~~-~~~~~~l~~l~~~L~~gG~l~~~~--~~~~~~---------~~~~~---~~~~~~~~~~~~~~~Gf~~~ 244 (274)
.+++++.+++ +.....+..+.+++.|||+++... |++-.+ ..+.+ ..-+..|+.++++.+||+.+
T Consensus 215 VsGL~ElF~Dn~lv~~sl~gl~~al~pgG~lIyTgQPwHPQle~IAr~LtsHr~g~~WvMRrRsq~EmD~Lv~~aGF~K~ 294 (311)
T PF12147_consen 215 VSGLYELFPDNDLVRRSLAGLARALEPGGYLIYTGQPWHPQLEMIARVLTSHRDGKAWVMRRRSQAEMDQLVEAAGFEKI 294 (311)
T ss_pred EecchhhCCcHHHHHHHHHHHHHHhCCCcEEEEcCCCCCcchHHHHHHHhcccCCCceEEEecCHHHHHHHHHHcCCchh
Confidence 9999999976 446678999999999999999887 444321 12222 33589999999999999865
Q ss_pred EEe
Q 024008 245 SIV 247 (274)
Q Consensus 245 ~~~ 247 (274)
...
T Consensus 295 ~q~ 297 (311)
T PF12147_consen 295 DQR 297 (311)
T ss_pred hhe
Confidence 443
No 129
>PRK04457 spermidine synthase; Provisional
Probab=99.33 E-value=1e-11 Score=104.24 Aligned_cols=107 Identities=18% Similarity=0.184 Sum_probs=83.6
Q ss_pred CCCeEEEEcCCcchhHHHhhC--CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCC--CCCCCeeEEEeccc
Q 024008 108 PKGRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW--CPTELFDLIFDYTF 183 (274)
Q Consensus 108 ~~~~vLDiG~G~G~~~~~l~~--~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--~~~~~fD~v~~~~~ 183 (274)
++.+|||||||+|..+..+++ ++.+++++|+++++++.|+++....+..++++++.+|..+. ...++||+|++..
T Consensus 66 ~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~~~~yD~I~~D~- 144 (262)
T PRK04457 66 RPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAVHRHSTDVILVDG- 144 (262)
T ss_pred CCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHhCCCCCCEEEEeC-
Confidence 457999999999999998876 57799999999999999999986554457899999998762 2236899999753
Q ss_pred ccc--cChh-HHHHHHHHHHhcccCCcEEEEEEcc
Q 024008 184 FCA--IEPE-MRAAWAQKIKDFLKPDGELITLMFP 215 (274)
Q Consensus 184 ~~~--~~~~-~~~~~l~~l~~~L~~gG~l~~~~~~ 215 (274)
+.. .+.. ....+++.+.+.|+|||++++..++
T Consensus 145 ~~~~~~~~~l~t~efl~~~~~~L~pgGvlvin~~~ 179 (262)
T PRK04457 145 FDGEGIIDALCTQPFFDDCRNALSSDGIFVVNLWS 179 (262)
T ss_pred CCCCCCccccCcHHHHHHHHHhcCCCcEEEEEcCC
Confidence 221 1111 2368899999999999999986543
No 130
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=99.32 E-value=1.7e-11 Score=98.73 Aligned_cols=112 Identities=19% Similarity=0.226 Sum_probs=91.0
Q ss_pred cHHHHHHHhcCCCCCCeEEEEcCCcchhHHHhhC--C-CCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEE-cccCCCC
Q 024008 95 APIIVHLHQSGALPKGRALVPGCGTGYDVVAMAS--P-ERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLK-ADFFTWC 170 (274)
Q Consensus 95 ~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~--~-~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~-~d~~~~~ 170 (274)
-..+..++. ..++++|||||++.|+.+++++. + ..+++.+|++++..+.|++++...++.+++..+. +|..+..
T Consensus 48 g~~L~~L~~--~~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~~l 125 (219)
T COG4122 48 GALLRLLAR--LSGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDALDVL 125 (219)
T ss_pred HHHHHHHHH--hcCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHHHHH
Confidence 333444444 34668999999999999999988 3 5699999999999999999999999998899988 5877622
Q ss_pred ---CCCCeeEEEecccccccChhHHHHHHHHHHhcccCCcEEEEEE
Q 024008 171 ---PTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLM 213 (274)
Q Consensus 171 ---~~~~fD~v~~~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~ 213 (274)
..++||+||. . .++.....+++.+.++|+|||.+++-+
T Consensus 126 ~~~~~~~fDliFI----D-adK~~yp~~le~~~~lLr~GGliv~DN 166 (219)
T COG4122 126 SRLLDGSFDLVFI----D-ADKADYPEYLERALPLLRPGGLIVADN 166 (219)
T ss_pred HhccCCCccEEEE----e-CChhhCHHHHHHHHHHhCCCcEEEEee
Confidence 3589999993 2 345667889999999999999998854
No 131
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=99.30 E-value=6.2e-12 Score=101.29 Aligned_cols=102 Identities=20% Similarity=0.217 Sum_probs=84.8
Q ss_pred CCCCeEEEEcCCcchhHHHhhC---CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCC-------CCCCee
Q 024008 107 LPKGRALVPGCGTGYDVVAMAS---PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC-------PTELFD 176 (274)
Q Consensus 107 ~~~~~vLDiG~G~G~~~~~l~~---~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-------~~~~fD 176 (274)
..+.+||||||++|+.++++++ .+.+++.+|++++..+.|++++...++.++++++.+|..+.. ..++||
T Consensus 44 ~~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~~l~~l~~~~~~~~fD 123 (205)
T PF01596_consen 44 TRPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALEVLPELANDGEEGQFD 123 (205)
T ss_dssp HT-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHHHHHHHHHTTTTTSEE
T ss_pred cCCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHhhHHHHHhccCCCcee
Confidence 4568999999999999999997 467999999999999999999999998889999999997621 135899
Q ss_pred EEEecccccccChhHHHHHHHHHHhcccCCcEEEEEE
Q 024008 177 LIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLM 213 (274)
Q Consensus 177 ~v~~~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~ 213 (274)
+|+.-. ++.....+++.+.++|+|||.+++-.
T Consensus 124 ~VFiDa-----~K~~y~~y~~~~~~ll~~ggvii~DN 155 (205)
T PF01596_consen 124 FVFIDA-----DKRNYLEYFEKALPLLRPGGVIIADN 155 (205)
T ss_dssp EEEEES-----TGGGHHHHHHHHHHHEEEEEEEEEET
T ss_pred EEEEcc-----cccchhhHHHHHhhhccCCeEEEEcc
Confidence 999432 34556778899999999999998854
No 132
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=99.30 E-value=5.7e-11 Score=102.65 Aligned_cols=140 Identities=20% Similarity=0.137 Sum_probs=100.6
Q ss_pred CCCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCC--CCCCeeEEEecccc
Q 024008 107 LPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC--PTELFDLIFDYTFF 184 (274)
Q Consensus 107 ~~~~~vLDiG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--~~~~fD~v~~~~~~ 184 (274)
.++.+|||+|||+|..+..+++.+.+|+|+|+++.+++.|++++...++ ++++|+.+|+.+.. ..+.||+|++...-
T Consensus 172 ~~~~~VLDl~cG~G~~sl~la~~~~~V~gvD~s~~av~~A~~n~~~~~l-~~v~~~~~D~~~~~~~~~~~~D~Vv~dPPr 250 (315)
T PRK03522 172 LPPRSMWDLFCGVGGFGLHCATPGMQLTGIEISAEAIACAKQSAAELGL-TNVQFQALDSTQFATAQGEVPDLVLVNPPR 250 (315)
T ss_pred cCCCEEEEccCCCCHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHcCC-CceEEEEcCHHHHHHhcCCCCeEEEECCCC
Confidence 3468999999999999999999889999999999999999999988876 57999999997632 23579999987664
Q ss_pred cccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcEEEEeecccccCCccchhHHHH
Q 024008 185 CAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAISIVDNKLAIGPRKGREKLGR 264 (274)
Q Consensus 185 ~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gf~~~~~~~~~~~~~~~~~~~~~~~ 264 (274)
..+. ..+++. ...++|++++++.+.+.. -..++..+ .||++..+...+. ++.-+..|++..
T Consensus 251 ~G~~----~~~~~~-l~~~~~~~ivyvsc~p~t----------~~rd~~~l---~~y~~~~~~~~Dm-FP~T~HvE~v~~ 311 (315)
T PRK03522 251 RGIG----KELCDY-LSQMAPRFILYSSCNAQT----------MAKDLAHL---PGYRIERVQLFDM-FPHTAHYEVLTL 311 (315)
T ss_pred CCcc----HHHHHH-HHHcCCCeEEEEECCccc----------chhHHhhc---cCcEEEEEEEecc-CCCCCeEEEEEE
Confidence 4332 223333 334678888888774332 13344443 5999998887543 222235666555
Q ss_pred hh
Q 024008 265 WK 266 (274)
Q Consensus 265 ~~ 266 (274)
+.
T Consensus 312 l~ 313 (315)
T PRK03522 312 LV 313 (315)
T ss_pred EE
Confidence 43
No 133
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=99.30 E-value=6.8e-11 Score=106.83 Aligned_cols=132 Identities=20% Similarity=0.214 Sum_probs=98.2
Q ss_pred CCCCCeEEEEcCCcchhHHHhhC---CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCeeEEEecc
Q 024008 106 ALPKGRALVPGCGTGYDVVAMAS---PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYT 182 (274)
Q Consensus 106 ~~~~~~vLDiG~G~G~~~~~l~~---~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~ 182 (274)
..++.+|||+|||+|..+..+++ .+.+|+++|+++.+++.+++++...++. +++++.+|+....+.++||.|++..
T Consensus 248 ~~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~-~v~~~~~Da~~~~~~~~fD~Vl~D~ 326 (445)
T PRK14904 248 PQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGIT-IIETIEGDARSFSPEEQPDAILLDA 326 (445)
T ss_pred CCCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCCC-eEEEEeCcccccccCCCCCEEEEcC
Confidence 34567999999999998877765 3469999999999999999999888764 6999999998765667899999642
Q ss_pred cc------c-------ccChhH-------HHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcC-CC
Q 024008 183 FF------C-------AIEPEM-------RAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPM-GF 241 (274)
Q Consensus 183 ~~------~-------~~~~~~-------~~~~l~~l~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-Gf 241 (274)
.. . .++++. ...++..+.+.|+|||++++.+++.... -+...+..+++.+ +|
T Consensus 327 Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystcs~~~~-------Ene~~v~~~l~~~~~~ 399 (445)
T PRK14904 327 PCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATCSIEPE-------ENELQIEAFLQRHPEF 399 (445)
T ss_pred CCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCChh-------hHHHHHHHHHHhCCCC
Confidence 21 1 111111 2468999999999999999988665321 1355666777766 46
Q ss_pred cEEE
Q 024008 242 QAIS 245 (274)
Q Consensus 242 ~~~~ 245 (274)
..+.
T Consensus 400 ~~~~ 403 (445)
T PRK14904 400 SAEP 403 (445)
T ss_pred EEec
Confidence 6543
No 134
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=99.30 E-value=3.1e-11 Score=100.46 Aligned_cols=150 Identities=21% Similarity=0.277 Sum_probs=111.2
Q ss_pred HHhcCCCCCCeEEEEcCCcchhHHHhhCCCC-eEEEEeCChHHHHHHHHHhhcCCCC-----cceEEEEcccCC------
Q 024008 101 LHQSGALPKGRALVPGCGTGYDVVAMASPER-YVVGLEISDIAIKKAEELSSSLPNA-----KFVSFLKADFFT------ 168 (274)
Q Consensus 101 ~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~-~v~~iD~s~~~~~~a~~~~~~~~~~-----~~v~~~~~d~~~------ 168 (274)
++.....++..++|+|||.|+.++..-+.|. .++|+|+....++.|++++..-... -.+.|+.+|.+.
T Consensus 110 LI~~y~~~~~~~~~LgCGKGGDLlKw~kAgI~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~ 189 (389)
T KOG1975|consen 110 LINLYTKRGDDVLDLGCGKGGDLLKWDKAGIGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDL 189 (389)
T ss_pred HHHHHhccccccceeccCCcccHhHhhhhcccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHh
Confidence 4444456678999999999999988877776 8999999999999999987653211 137889999886
Q ss_pred CC-CCCCeeEEEeccccccc--ChhHHHHHHHHHHhcccCCcEEEEEEccCC----------------------------
Q 024008 169 WC-PTELFDLIFDYTFFCAI--EPEMRAAWAQKIKDFLKPDGELITLMFPIS---------------------------- 217 (274)
Q Consensus 169 ~~-~~~~fD~v~~~~~~~~~--~~~~~~~~l~~l~~~L~~gG~l~~~~~~~~---------------------------- 217 (274)
.. ++.+||+|-|..++|+. +.+..+.++..+.++|+|||+++-+.....
T Consensus 190 ~e~~dp~fDivScQF~~HYaFetee~ar~~l~Nva~~LkpGG~FIgTiPdsd~Ii~rlr~~e~~~~gNdiykv~y~~~~~ 269 (389)
T KOG1975|consen 190 LEFKDPRFDIVSCQFAFHYAFETEESARIALRNVAKCLKPGGVFIGTIPDSDVIIKRLRAGEVERFGNDIYKVTYEIEFQ 269 (389)
T ss_pred ccCCCCCcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCCcEEEEecCcHHHHHHHHHhccchhhcceeeeEeeeeecc
Confidence 22 23349999999999984 345677889999999999999987543210
Q ss_pred -----------------CCCCCCCcccCHHHHHHHHhcCCCcEEEEeecc
Q 024008 218 -----------------DHVGGPPYKVSVSDYEEVLQPMGFQAISIVDNK 250 (274)
Q Consensus 218 -----------------~~~~~~~~~~~~~~~~~~~~~~Gf~~~~~~~~~ 250 (274)
+....|.|...-..+..++++.|.+++.+....
T Consensus 270 k~~~~p~fG~kY~F~LedaVdcPEylV~F~~l~~lae~y~LeLv~~k~F~ 319 (389)
T KOG1975|consen 270 KEFDVPPFGAKYRFHLEDAVDCPEYLVPFPTLVSLAEEYGLELVFVKPFA 319 (389)
T ss_pred cccCCCCccceEEEEcccccCCcceeeehHHHHHHHHhcCcEEEEeccHH
Confidence 001112233456678889999999998887744
No 135
>PRK00811 spermidine synthase; Provisional
Probab=99.29 E-value=4.4e-11 Score=101.65 Aligned_cols=106 Identities=17% Similarity=0.210 Sum_probs=81.9
Q ss_pred CCCeEEEEcCCcchhHHHhhCC-C-CeEEEEeCChHHHHHHHHHhhcCC----CCcceEEEEcccCCCC--CCCCeeEEE
Q 024008 108 PKGRALVPGCGTGYDVVAMASP-E-RYVVGLEISDIAIKKAEELSSSLP----NAKFVSFLKADFFTWC--PTELFDLIF 179 (274)
Q Consensus 108 ~~~~vLDiG~G~G~~~~~l~~~-~-~~v~~iD~s~~~~~~a~~~~~~~~----~~~~v~~~~~d~~~~~--~~~~fD~v~ 179 (274)
.+.+||++|||+|..+..+++. + .+|+++|+++.+++.|++.++..+ ..++++++.+|..... ..++||+|+
T Consensus 76 ~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvIi 155 (283)
T PRK00811 76 NPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFDVII 155 (283)
T ss_pred CCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCcccEEE
Confidence 4579999999999999988873 4 489999999999999999876421 1468999999998732 357899999
Q ss_pred ecccccccChh--HHHHHHHHHHhcccCCcEEEEEE
Q 024008 180 DYTFFCAIEPE--MRAAWAQKIKDFLKPDGELITLM 213 (274)
Q Consensus 180 ~~~~~~~~~~~--~~~~~l~~l~~~L~~gG~l~~~~ 213 (274)
+...-...+.. ....+++.+.+.|+|||++++..
T Consensus 156 ~D~~dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~~~ 191 (283)
T PRK00811 156 VDSTDPVGPAEGLFTKEFYENCKRALKEDGIFVAQS 191 (283)
T ss_pred ECCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEeC
Confidence 86432222211 13677899999999999988753
No 136
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=99.28 E-value=8.1e-11 Score=90.25 Aligned_cols=131 Identities=17% Similarity=0.277 Sum_probs=104.6
Q ss_pred CCeEEEEcCCcchhHHHhhC---CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCeeEEEeccccc
Q 024008 109 KGRALVPGCGTGYDVVAMAS---PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFC 185 (274)
Q Consensus 109 ~~~vLDiG~G~G~~~~~l~~---~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~~~~ 185 (274)
+..++|||||+|..+..|++ ++..+.++|++|.+++..++.+..++ .+++.++.|+......++.|+++.+..+.
T Consensus 44 ~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~--~~~~~V~tdl~~~l~~~~VDvLvfNPPYV 121 (209)
T KOG3191|consen 44 PEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNR--VHIDVVRTDLLSGLRNESVDVLVFNPPYV 121 (209)
T ss_pred ceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcC--CccceeehhHHhhhccCCccEEEECCCcC
Confidence 57899999999999999988 55689999999999999999887765 45888999999855559999999987654
Q ss_pred ccChh-------------------HHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcEEEE
Q 024008 186 AIEPE-------------------MRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAISI 246 (274)
Q Consensus 186 ~~~~~-------------------~~~~~l~~l~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gf~~~~~ 246 (274)
--+++ -.+.++.++-..|.|.|.+++.....+ .++++.++++..||.....
T Consensus 122 pt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~~~~N----------~p~ei~k~l~~~g~~~~~~ 191 (209)
T KOG3191|consen 122 PTSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLVALRAN----------KPKEILKILEKKGYGVRIA 191 (209)
T ss_pred cCCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEeeehhhc----------CHHHHHHHHhhcccceeEE
Confidence 32211 135667777788899999998875443 5789999999999998877
Q ss_pred eeccc
Q 024008 247 VDNKL 251 (274)
Q Consensus 247 ~~~~~ 251 (274)
..+..
T Consensus 192 ~~Rk~ 196 (209)
T KOG3191|consen 192 MQRKA 196 (209)
T ss_pred EEEec
Confidence 76543
No 137
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=99.28 E-value=1.6e-10 Score=103.84 Aligned_cols=131 Identities=18% Similarity=0.162 Sum_probs=97.3
Q ss_pred CCCCCeEEEEcCCcchhHHHhhCC--CCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCC---CCCCeeEEEe
Q 024008 106 ALPKGRALVPGCGTGYDVVAMASP--ERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC---PTELFDLIFD 180 (274)
Q Consensus 106 ~~~~~~vLDiG~G~G~~~~~l~~~--~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~---~~~~fD~v~~ 180 (274)
..++.+|||+|||+|..+..+++. +.+|+++|+++.+++.+++++...+. +++++.+|+.... ..++||.|++
T Consensus 242 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~g~--~~~~~~~D~~~~~~~~~~~~fD~Vl~ 319 (427)
T PRK10901 242 PQNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRLGL--KATVIVGDARDPAQWWDGQPFDRILL 319 (427)
T ss_pred CCCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCC--CeEEEEcCcccchhhcccCCCCEEEE
Confidence 345689999999999999988873 36999999999999999999988775 3789999997632 3467999997
Q ss_pred cccccc-------------cChh-------HHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcC-
Q 024008 181 YTFFCA-------------IEPE-------MRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPM- 239 (274)
Q Consensus 181 ~~~~~~-------------~~~~-------~~~~~l~~l~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 239 (274)
...... ..+. ....++..+.+.|+|||.+++..+..... -+.+.+...++++
T Consensus 320 D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystcs~~~~-------Ene~~v~~~l~~~~ 392 (427)
T PRK10901 320 DAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATCSILPE-------ENEQQIKAFLARHP 392 (427)
T ss_pred CCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCChh-------hCHHHHHHHHHhCC
Confidence 654321 1111 12478999999999999999877544321 2456777777766
Q ss_pred CCcEEE
Q 024008 240 GFQAIS 245 (274)
Q Consensus 240 Gf~~~~ 245 (274)
+|.++.
T Consensus 393 ~~~~~~ 398 (427)
T PRK10901 393 DAELLD 398 (427)
T ss_pred CCEEec
Confidence 576544
No 138
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.27 E-value=6e-11 Score=101.97 Aligned_cols=105 Identities=23% Similarity=0.178 Sum_probs=80.3
Q ss_pred HHHhcCC-CCCCeEEEEcCCcchhHHHhhCC---CCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCC-CCCCC
Q 024008 100 HLHQSGA-LPKGRALVPGCGTGYDVVAMASP---ERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW-CPTEL 174 (274)
Q Consensus 100 ~~~~~~~-~~~~~vLDiG~G~G~~~~~l~~~---~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~~~~~ 174 (274)
.+++... .++.+|||+|||+|..+..+++. ...|+++|+++++++.|++++...+. +++.++.+|.... ...++
T Consensus 71 ~ll~~L~i~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~-~nV~~i~gD~~~~~~~~~~ 149 (322)
T PRK13943 71 LFMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGI-ENVIFVCGDGYYGVPEFAP 149 (322)
T ss_pred HHHHhcCCCCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCC-CcEEEEeCChhhcccccCC
Confidence 3444433 35579999999999999988872 23799999999999999999887765 4699999998763 33467
Q ss_pred eeEEEecccccccChhHHHHHHHHHHhcccCCcEEEEEE
Q 024008 175 FDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLM 213 (274)
Q Consensus 175 fD~v~~~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~ 213 (274)
||+|++......+ ...+.+.|+|||.+++..
T Consensus 150 fD~Ii~~~g~~~i--------p~~~~~~LkpgG~Lvv~~ 180 (322)
T PRK13943 150 YDVIFVTVGVDEV--------PETWFTQLKEGGRVIVPI 180 (322)
T ss_pred ccEEEECCchHHh--------HHHHHHhcCCCCEEEEEe
Confidence 9999986544432 245678999999988754
No 139
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=99.26 E-value=6.8e-11 Score=93.01 Aligned_cols=99 Identities=14% Similarity=0.091 Sum_probs=74.0
Q ss_pred CCCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCC-CCCCeeEEEeccccc
Q 024008 107 LPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC-PTELFDLIFDYTFFC 185 (274)
Q Consensus 107 ~~~~~vLDiG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-~~~~fD~v~~~~~~~ 185 (274)
.++.+|||+|||+|.++..+++.+.+++++|+++.+++.++++.... ++++++.+|+.+.. +...||.|+++..++
T Consensus 12 ~~~~~vLEiG~G~G~lt~~l~~~~~~v~~vE~~~~~~~~~~~~~~~~---~~v~ii~~D~~~~~~~~~~~d~vi~n~Py~ 88 (169)
T smart00650 12 RPGDTVLEIGPGKGALTEELLERAARVTAIEIDPRLAPRLREKFAAA---DNLTVIHGDALKFDLPKLQPYKVVGNLPYN 88 (169)
T ss_pred CCcCEEEEECCCccHHHHHHHhcCCeEEEEECCHHHHHHHHHHhccC---CCEEEEECchhcCCccccCCCEEEECCCcc
Confidence 34579999999999999999998889999999999999999988542 47999999998843 344699999987766
Q ss_pred ccChhHHHHHHHHHHhcccCCcEEEE
Q 024008 186 AIEPEMRAAWAQKIKDFLKPDGELIT 211 (274)
Q Consensus 186 ~~~~~~~~~~l~~l~~~L~~gG~l~~ 211 (274)
+..+....+++.. .+.++|.+++
T Consensus 89 -~~~~~i~~~l~~~--~~~~~~~l~~ 111 (169)
T smart00650 89 -ISTPILFKLLEEP--PAFRDAVLMV 111 (169)
T ss_pred -cHHHHHHHHHhcC--CCcceEEEEE
Confidence 3333333333321 1335666655
No 140
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=99.26 E-value=1.5e-11 Score=98.23 Aligned_cols=106 Identities=25% Similarity=0.312 Sum_probs=73.9
Q ss_pred CCCeEEEEcCCcchhHHHhh----C-----C--CCeEEEEeCChHHHHHHHHHhhcC-------------------C---
Q 024008 108 PKGRALVPGCGTGYDVVAMA----S-----P--ERYVVGLEISDIAIKKAEELSSSL-------------------P--- 154 (274)
Q Consensus 108 ~~~~vLDiG~G~G~~~~~l~----~-----~--~~~v~~iD~s~~~~~~a~~~~~~~-------------------~--- 154 (274)
+..+|+..||++|.-...++ + . ..+|+|+|+|+.+++.|++-.-.. +
T Consensus 31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~ 110 (196)
T PF01739_consen 31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGY 110 (196)
T ss_dssp S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCT
T ss_pred CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCce
Confidence 34699999999997653332 2 2 248999999999999997732111 0
Q ss_pred -----CCcceEEEEcccCC-CCCCCCeeEEEecccccccChhHHHHHHHHHHhcccCCcEEEEEE
Q 024008 155 -----NAKFVSFLKADFFT-WCPTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLM 213 (274)
Q Consensus 155 -----~~~~v~~~~~d~~~-~~~~~~fD~v~~~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~ 213 (274)
+..+|+|...|+.+ ..+.+.||+|+|.+|+.+++++....+++++++.|+|||++++..
T Consensus 111 ~v~~~lr~~V~F~~~NL~~~~~~~~~fD~I~CRNVlIYF~~~~~~~vl~~l~~~L~pgG~L~lG~ 175 (196)
T PF01739_consen 111 RVKPELRKMVRFRRHNLLDPDPPFGRFDLIFCRNVLIYFDPETQQRVLRRLHRSLKPGGYLFLGH 175 (196)
T ss_dssp TE-HHHHTTEEEEE--TT-S------EEEEEE-SSGGGS-HHHHHHHHHHHGGGEEEEEEEEE-T
T ss_pred eEChHHcCceEEEecccCCCCcccCCccEEEecCEEEEeCHHHHHHHHHHHHHHcCCCCEEEEec
Confidence 12479999999998 666789999999999999999999999999999999999999865
No 141
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=99.25 E-value=9.4e-11 Score=103.51 Aligned_cols=138 Identities=20% Similarity=0.162 Sum_probs=101.2
Q ss_pred CCCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCC--CCCeeEEEecccc
Q 024008 107 LPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP--TELFDLIFDYTFF 184 (274)
Q Consensus 107 ~~~~~vLDiG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~--~~~fD~v~~~~~~ 184 (274)
.++.+|||+|||+|.++..++..+.+|+|+|+++.+++.|++++..++. ++++|+.+|+.+... .++||+|+.....
T Consensus 232 ~~~~~vLDL~cG~G~~~l~la~~~~~v~~vE~~~~av~~a~~N~~~~~~-~~~~~~~~d~~~~~~~~~~~~D~vi~DPPr 310 (374)
T TIGR02085 232 IPVTQMWDLFCGVGGFGLHCAGPDTQLTGIEIESEAIACAQQSAQMLGL-DNLSFAALDSAKFATAQMSAPELVLVNPPR 310 (374)
T ss_pred cCCCEEEEccCCccHHHHHHhhcCCeEEEEECCHHHHHHHHHHHHHcCC-CcEEEEECCHHHHHHhcCCCCCEEEECCCC
Confidence 3457999999999999999999888999999999999999999988876 379999999976332 2469999988776
Q ss_pred cccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccC-HHHHHHHHhcCCCcEEEEeecccccCCccchhHHH
Q 024008 185 CAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVS-VSDYEEVLQPMGFQAISIVDNKLAIGPRKGREKLG 263 (274)
Q Consensus 185 ~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~Gf~~~~~~~~~~~~~~~~~~~~~~ 263 (274)
..+. ..+++.+. .++|++++++.+.+. | ..++.. | .||++..+...+. ++.-+..|.+.
T Consensus 311 ~G~~----~~~l~~l~-~~~p~~ivyvsc~p~-----------TlaRDl~~-L--~gy~l~~~~~~Dm-FPqT~HvE~v~ 370 (374)
T TIGR02085 311 RGIG----KELCDYLS-QMAPKFILYSSCNAQ-----------TMAKDIAE-L--SGYQIERVQLFDM-FPHTSHYEVLT 370 (374)
T ss_pred CCCc----HHHHHHHH-hcCCCeEEEEEeCHH-----------HHHHHHHH-h--cCceEEEEEEecc-CCCCCcEEEEE
Confidence 5444 33445554 378999999887322 2 334433 3 6999998887553 22223455554
Q ss_pred Hh
Q 024008 264 RW 265 (274)
Q Consensus 264 ~~ 265 (274)
++
T Consensus 371 ll 372 (374)
T TIGR02085 371 LL 372 (374)
T ss_pred EE
Confidence 43
No 142
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=99.25 E-value=4.4e-11 Score=95.27 Aligned_cols=140 Identities=18% Similarity=0.174 Sum_probs=107.9
Q ss_pred CCCeEEEEcCCcchhHHHhhCCCC-eEEEEeCChHHHHHHHHHhhcCCC-CcceEEEEcccCC---CCCCCCeeEEEecc
Q 024008 108 PKGRALVPGCGTGYDVVAMASPER-YVVGLEISDIAIKKAEELSSSLPN-AKFVSFLKADFFT---WCPTELFDLIFDYT 182 (274)
Q Consensus 108 ~~~~vLDiG~G~G~~~~~l~~~~~-~v~~iD~s~~~~~~a~~~~~~~~~-~~~v~~~~~d~~~---~~~~~~fD~v~~~~ 182 (274)
.+.+|||...|-|+.++..++.|+ +|+.+|.+|..++.|+-|--+.++ ..+++++.+|+.+ .+++++||+|+--.
T Consensus 134 ~G~rVLDtC~GLGYtAi~a~~rGA~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~e~V~~~~D~sfDaIiHDP 213 (287)
T COG2521 134 RGERVLDTCTGLGYTAIEALERGAIHVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAYEVVKDFDDESFDAIIHDP 213 (287)
T ss_pred cCCEeeeeccCccHHHHHHHHcCCcEEEEEeeCCCeEEeeccCCCCccccccccEEecccHHHHHhcCCccccceEeeCC
Confidence 468999999999999999999999 999999999999999877655443 3468999999987 56778999999543
Q ss_pred c-ccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcEEEEeecc
Q 024008 183 F-FCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAISIVDNK 250 (274)
Q Consensus 183 ~-~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gf~~~~~~~~~ 250 (274)
. |.....=....+.++++++|+|||.++-..-.+.....|-. -+..+.+.++++||.+++.....
T Consensus 214 PRfS~AgeLYseefY~El~RiLkrgGrlFHYvG~Pg~ryrG~d---~~~gVa~RLr~vGF~~v~~~~~~ 279 (287)
T COG2521 214 PRFSLAGELYSEEFYRELYRILKRGGRLFHYVGNPGKRYRGLD---LPKGVAERLRRVGFEVVKKVREA 279 (287)
T ss_pred CccchhhhHhHHHHHHHHHHHcCcCCcEEEEeCCCCcccccCC---hhHHHHHHHHhcCceeeeeehhc
Confidence 2 22211112367889999999999999987755543322222 36889999999999987766543
No 143
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=99.24 E-value=1.8e-10 Score=92.48 Aligned_cols=105 Identities=12% Similarity=0.082 Sum_probs=80.4
Q ss_pred CCCCeEEEEcCCcchhHHHhhC-CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCC--CCCCeeEEEeccc
Q 024008 107 LPKGRALVPGCGTGYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC--PTELFDLIFDYTF 183 (274)
Q Consensus 107 ~~~~~vLDiG~G~G~~~~~l~~-~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--~~~~fD~v~~~~~ 183 (274)
.++.+|||+|||+|..++.++. ...+|+++|.++.+++.+++++...+. .+++++.+|+.+.. ...+||+|++...
T Consensus 52 ~~~~~vLDl~~GsG~l~l~~lsr~a~~V~~vE~~~~a~~~a~~Nl~~~~~-~~v~~~~~D~~~~l~~~~~~fDlV~~DPP 130 (199)
T PRK10909 52 IVDARCLDCFAGSGALGLEALSRYAAGATLLEMDRAVAQQLIKNLATLKA-GNARVVNTNALSFLAQPGTPHNVVFVDPP 130 (199)
T ss_pred cCCCEEEEcCCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHhCC-CcEEEEEchHHHHHhhcCCCceEEEECCC
Confidence 3457999999999999986544 445999999999999999999988775 47999999997732 2346999999988
Q ss_pred ccccChhHHHHHHHHHHh--cccCCcEEEEEEcc
Q 024008 184 FCAIEPEMRAAWAQKIKD--FLKPDGELITLMFP 215 (274)
Q Consensus 184 ~~~~~~~~~~~~l~~l~~--~L~~gG~l~~~~~~ 215 (274)
+.. .....+++.+.. +|+|++++++....
T Consensus 131 y~~---g~~~~~l~~l~~~~~l~~~~iv~ve~~~ 161 (199)
T PRK10909 131 FRK---GLLEETINLLEDNGWLADEALIYVESEV 161 (199)
T ss_pred CCC---ChHHHHHHHHHHCCCcCCCcEEEEEecC
Confidence 543 233445555555 37899988887644
No 144
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=99.24 E-value=1.3e-10 Score=92.96 Aligned_cols=117 Identities=17% Similarity=0.294 Sum_probs=81.2
Q ss_pred CCCCeEEEEcCCcchhHHHhhC---CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCC---------CCCCC
Q 024008 107 LPKGRALVPGCGTGYDVVAMAS---PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW---------CPTEL 174 (274)
Q Consensus 107 ~~~~~vLDiG~G~G~~~~~l~~---~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~---------~~~~~ 174 (274)
.++.+|||+|||+|..+..+++ ...+++++|+++.+ .. .+++++.+|+.+. .+.++
T Consensus 31 ~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~---------~~---~~i~~~~~d~~~~~~~~~l~~~~~~~~ 98 (188)
T TIGR00438 31 KPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK---------PI---ENVDFIRGDFTDEEVLNKIRERVGDDK 98 (188)
T ss_pred CCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc---------cC---CCceEEEeeCCChhHHHHHHHHhCCCC
Confidence 4568999999999999988876 23489999999854 11 3578888898753 24568
Q ss_pred eeEEEeccccc---c--cCh----hHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcEEE
Q 024008 175 FDLIFDYTFFC---A--IEP----EMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAIS 245 (274)
Q Consensus 175 fD~v~~~~~~~---~--~~~----~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gf~~~~ 245 (274)
||+|++....+ . ++. .....++..+.++|+|||++++..+... ...++.+.++. +|..+.
T Consensus 99 ~D~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~~~~~----------~~~~~l~~l~~-~~~~~~ 167 (188)
T TIGR00438 99 VDVVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKVFQGE----------EIDEYLNELRK-LFEKVK 167 (188)
T ss_pred ccEEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEEccCc----------cHHHHHHHHHh-hhceEE
Confidence 99999865321 1 111 2346789999999999999998653321 34566666665 365444
Q ss_pred E
Q 024008 246 I 246 (274)
Q Consensus 246 ~ 246 (274)
+
T Consensus 168 ~ 168 (188)
T TIGR00438 168 V 168 (188)
T ss_pred E
Confidence 4
No 145
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=99.24 E-value=2.4e-10 Score=102.54 Aligned_cols=133 Identities=17% Similarity=0.178 Sum_probs=98.3
Q ss_pred CCCCCeEEEEcCCcchhHHHhhC---CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCC--CCCCeeEEEe
Q 024008 106 ALPKGRALVPGCGTGYDVVAMAS---PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC--PTELFDLIFD 180 (274)
Q Consensus 106 ~~~~~~vLDiG~G~G~~~~~l~~---~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--~~~~fD~v~~ 180 (274)
..++.+|||+|||+|..+..++. .+.+|+++|+++.+++.+++++...+.. +++++.+|..... ..++||.|++
T Consensus 235 ~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~~-~v~~~~~Da~~l~~~~~~~fD~Vl~ 313 (431)
T PRK14903 235 LEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLS-SIEIKIADAERLTEYVQDTFDRILV 313 (431)
T ss_pred CCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCC-eEEEEECchhhhhhhhhccCCEEEE
Confidence 34567999999999999888776 3569999999999999999999888764 5899999987632 3568999997
Q ss_pred ccccccc-----Chh---------------HHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcC-
Q 024008 181 YTFFCAI-----EPE---------------MRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPM- 239 (274)
Q Consensus 181 ~~~~~~~-----~~~---------------~~~~~l~~l~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 239 (274)
....... .++ ...+++..+.+.|+|||.++...++.... -+.+.+.+.++.+
T Consensus 314 DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~~~e-------Ene~vv~~fl~~~~ 386 (431)
T PRK14903 314 DAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCTVTKE-------ENTEVVKRFVYEQK 386 (431)
T ss_pred CCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCChh-------hCHHHHHHHHHhCC
Confidence 5443211 111 12567899999999999999888665322 1455666666654
Q ss_pred CCcEEEE
Q 024008 240 GFQAISI 246 (274)
Q Consensus 240 Gf~~~~~ 246 (274)
+|.++..
T Consensus 387 ~~~~~~~ 393 (431)
T PRK14903 387 DAEVIDI 393 (431)
T ss_pred CcEEecc
Confidence 5765544
No 146
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=99.23 E-value=3e-10 Score=102.76 Aligned_cols=133 Identities=19% Similarity=0.152 Sum_probs=97.6
Q ss_pred CCCCeEEEEcCCcchhHHHhhC---CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCC--CCCCeeEEEec
Q 024008 107 LPKGRALVPGCGTGYDVVAMAS---PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC--PTELFDLIFDY 181 (274)
Q Consensus 107 ~~~~~vLDiG~G~G~~~~~l~~---~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--~~~~fD~v~~~ 181 (274)
.++.+|||+|||+|..+..+++ ...+++++|+++.+++.+++++...+.. +++++.+|+.... ..+.||+|++.
T Consensus 249 ~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~-~v~~~~~D~~~~~~~~~~~fD~Vl~D 327 (444)
T PRK14902 249 KGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLT-NIETKALDARKVHEKFAEKFDKILVD 327 (444)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-eEEEEeCCcccccchhcccCCEEEEc
Confidence 4567999999999999988887 3569999999999999999999888774 4999999997642 12689999986
Q ss_pred cccccc-------------ChhH-------HHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCC-
Q 024008 182 TFFCAI-------------EPEM-------RAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMG- 240 (274)
Q Consensus 182 ~~~~~~-------------~~~~-------~~~~l~~l~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G- 240 (274)
...... .+.. ...++..+.++|+|||.++......... -....+.++++.++
T Consensus 328 ~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvystcs~~~~-------Ene~vv~~~l~~~~~ 400 (444)
T PRK14902 328 APCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYSTCTIEKE-------ENEEVIEAFLEEHPE 400 (444)
T ss_pred CCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCCCChh-------hhHHHHHHHHHhCCC
Confidence 542211 1111 2467899999999999998766443211 13456666777664
Q ss_pred CcEEEEe
Q 024008 241 FQAISIV 247 (274)
Q Consensus 241 f~~~~~~ 247 (274)
|+.+.+.
T Consensus 401 ~~~~~~~ 407 (444)
T PRK14902 401 FELVPLQ 407 (444)
T ss_pred cEEeccc
Confidence 7776654
No 147
>PRK01581 speE spermidine synthase; Validated
Probab=99.23 E-value=2.8e-10 Score=98.06 Aligned_cols=139 Identities=15% Similarity=0.122 Sum_probs=98.5
Q ss_pred CCCCeEEEEcCCcchhHHHhhCC--CCeEEEEeCChHHHHHHHHH--hh---cCC-CCcceEEEEcccCCC--CCCCCee
Q 024008 107 LPKGRALVPGCGTGYDVVAMASP--ERYVVGLEISDIAIKKAEEL--SS---SLP-NAKFVSFLKADFFTW--CPTELFD 176 (274)
Q Consensus 107 ~~~~~vLDiG~G~G~~~~~l~~~--~~~v~~iD~s~~~~~~a~~~--~~---~~~-~~~~v~~~~~d~~~~--~~~~~fD 176 (274)
..+.+||++|||+|..+..+++. ..+|+++|+++++++.|++. +. ... ..++++++.+|.... ...++||
T Consensus 149 ~~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~~~YD 228 (374)
T PRK01581 149 IDPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPSSLYD 228 (374)
T ss_pred CCCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhcCCCcc
Confidence 44579999999999999888873 35999999999999999972 11 111 247899999999873 3346899
Q ss_pred EEEeccccc---ccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCccc--CHHHHHHHHhcCCCcEEEEeeccc
Q 024008 177 LIFDYTFFC---AIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKV--SVSDYEEVLQPMGFQAISIVDNKL 251 (274)
Q Consensus 177 ~v~~~~~~~---~~~~~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~Gf~~~~~~~~~~ 251 (274)
+|++...-. ....-....+++.+.+.|+|||++++..-++ +.. .-..+.+.++++|+.+........
T Consensus 229 VIIvDl~DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Qs~sp--------~~~~~~~~~i~~tL~~af~~v~~y~t~vP 300 (374)
T PRK01581 229 VIIIDFPDPATELLSTLYTSELFARIATFLTEDGAFVCQSNSP--------ADAPLVYWSIGNTIEHAGLTVKSYHTIVP 300 (374)
T ss_pred EEEEcCCCccccchhhhhHHHHHHHHHHhcCCCcEEEEecCCh--------hhhHHHHHHHHHHHHHhCCceEEEEEecC
Confidence 999764211 0111123578899999999999987764211 111 113477889999998887777644
Q ss_pred cc
Q 024008 252 AI 253 (274)
Q Consensus 252 ~~ 253 (274)
.+
T Consensus 301 sy 302 (374)
T PRK01581 301 SF 302 (374)
T ss_pred CC
Confidence 44
No 148
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=99.23 E-value=7.7e-11 Score=97.49 Aligned_cols=100 Identities=16% Similarity=0.224 Sum_probs=85.0
Q ss_pred CCCCeEEEEcCCcchhHHHhhC---CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCC--------CCCe
Q 024008 107 LPKGRALVPGCGTGYDVVAMAS---PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP--------TELF 175 (274)
Q Consensus 107 ~~~~~vLDiG~G~G~~~~~l~~---~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~--------~~~f 175 (274)
.++.+|||||+++|+.+++++. ++.+++.+|.+++..+.|++++...|+.++++++.+|+.+..+ .++|
T Consensus 78 ~~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e~L~~l~~~~~~~~~f 157 (247)
T PLN02589 78 INAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDQMIEDGKYHGTF 157 (247)
T ss_pred hCCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHHHHHHHHhccccCCcc
Confidence 4568999999999999999887 4679999999999999999999999998999999999877221 2689
Q ss_pred eEEEecccccccChhHHHHHHHHHHhcccCCcEEEE
Q 024008 176 DLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELIT 211 (274)
Q Consensus 176 D~v~~~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~ 211 (274)
|+|+.- .++.....+++.+.+.|+|||.|++
T Consensus 158 D~iFiD-----adK~~Y~~y~~~~l~ll~~GGviv~ 188 (247)
T PLN02589 158 DFIFVD-----ADKDNYINYHKRLIDLVKVGGVIGY 188 (247)
T ss_pred cEEEec-----CCHHHhHHHHHHHHHhcCCCeEEEE
Confidence 999942 2345667888999999999999886
No 149
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=99.22 E-value=4.2e-10 Score=101.23 Aligned_cols=130 Identities=18% Similarity=0.134 Sum_probs=95.3
Q ss_pred CCCCCeEEEEcCCcchhHHHhhC--CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCC---CCCCeeEEEe
Q 024008 106 ALPKGRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC---PTELFDLIFD 180 (274)
Q Consensus 106 ~~~~~~vLDiG~G~G~~~~~l~~--~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~---~~~~fD~v~~ 180 (274)
..++.+|||+|||+|..+..+++ ...+++++|+++.+++.+++++...+...++.+..+|..... +.++||.|++
T Consensus 236 ~~~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~~~~~~~~~~~fD~Vll 315 (426)
T TIGR00563 236 PQNEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDGRGPSQWAENEQFDRILL 315 (426)
T ss_pred CCCCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeccccccccccccccccCEEEE
Confidence 44568999999999999988877 346999999999999999999988876544555777776532 3568999996
Q ss_pred cc------cccccCh-------h-------HHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCC
Q 024008 181 YT------FFCAIEP-------E-------MRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMG 240 (274)
Q Consensus 181 ~~------~~~~~~~-------~-------~~~~~l~~l~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G 240 (274)
.. ++...++ . ....++..+.++|+|||.+++.+++.... -+...+..+++.++
T Consensus 316 DaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystcs~~~~-------Ene~~v~~~l~~~~ 388 (426)
T TIGR00563 316 DAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATCSVLPE-------ENSEQIKAFLQEHP 388 (426)
T ss_pred cCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCChh-------hCHHHHHHHHHhCC
Confidence 42 3332221 1 12578899999999999999988665321 14666777777763
Q ss_pred -Cc
Q 024008 241 -FQ 242 (274)
Q Consensus 241 -f~ 242 (274)
|.
T Consensus 389 ~~~ 391 (426)
T TIGR00563 389 DFP 391 (426)
T ss_pred CCe
Confidence 54
No 150
>PRK03612 spermidine synthase; Provisional
Probab=99.21 E-value=1.3e-10 Score=106.76 Aligned_cols=133 Identities=20% Similarity=0.194 Sum_probs=94.3
Q ss_pred CCCCeEEEEcCCcchhHHHhhCC-C-CeEEEEeCChHHHHHHHHHh--hcC---CC-CcceEEEEcccCCC--CCCCCee
Q 024008 107 LPKGRALVPGCGTGYDVVAMASP-E-RYVVGLEISDIAIKKAEELS--SSL---PN-AKFVSFLKADFFTW--CPTELFD 176 (274)
Q Consensus 107 ~~~~~vLDiG~G~G~~~~~l~~~-~-~~v~~iD~s~~~~~~a~~~~--~~~---~~-~~~v~~~~~d~~~~--~~~~~fD 176 (274)
.++++|||+|||+|..+..+++. + .+++++|+++++++.++++. ... .. .++++++.+|..+. ..+++||
T Consensus 296 ~~~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~fD 375 (521)
T PRK03612 296 ARPRRVLVLGGGDGLALREVLKYPDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEKFD 375 (521)
T ss_pred CCCCeEEEEcCCccHHHHHHHhCCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCCCC
Confidence 34579999999999999988874 3 59999999999999999842 221 11 36899999999872 2346899
Q ss_pred EEEecccccccCh---hHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcEEE
Q 024008 177 LIFDYTFFCAIEP---EMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAIS 245 (274)
Q Consensus 177 ~v~~~~~~~~~~~---~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gf~~~~ 245 (274)
+|++.......+. -...++++.+.+.|+|||.+++...++... .....++.+.+++.||.+..
T Consensus 376 vIi~D~~~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~~~~~~~~------~~~~~~i~~~l~~~gf~v~~ 441 (521)
T PRK03612 376 VIIVDLPDPSNPALGKLYSVEFYRLLKRRLAPDGLLVVQSTSPYFA------PKAFWSIEATLEAAGLATTP 441 (521)
T ss_pred EEEEeCCCCCCcchhccchHHHHHHHHHhcCCCeEEEEecCCcccc------hHHHHHHHHHHHHcCCEEEE
Confidence 9998754322111 112467899999999999988765222110 01235788899999994433
No 151
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=99.21 E-value=3.7e-10 Score=101.78 Aligned_cols=131 Identities=18% Similarity=0.160 Sum_probs=97.7
Q ss_pred CCCCCeEEEEcCCcchhHHHhhC---CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCC-----CCCCeeE
Q 024008 106 ALPKGRALVPGCGTGYDVVAMAS---PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC-----PTELFDL 177 (274)
Q Consensus 106 ~~~~~~vLDiG~G~G~~~~~l~~---~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~~~~fD~ 177 (274)
..++.+|||+|||+|..+..+++ ...+|+++|+++.+++.+++++...+.. +++++.+|..... ..++||.
T Consensus 250 ~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~-~v~~~~~D~~~~~~~~~~~~~~fD~ 328 (434)
T PRK14901 250 PQPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLK-SIKILAADSRNLLELKPQWRGYFDR 328 (434)
T ss_pred CCCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCC-eEEEEeCChhhcccccccccccCCE
Confidence 34568999999999999988876 2358999999999999999999888764 5999999987632 2468999
Q ss_pred EEeccc------ccccCh-------hH-------HHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHh
Q 024008 178 IFDYTF------FCAIEP-------EM-------RAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQ 237 (274)
Q Consensus 178 v~~~~~------~~~~~~-------~~-------~~~~l~~l~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (274)
|++... +..-++ .. ...++..+.+.|+|||+++..++..... -....+.++++
T Consensus 329 Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystcsi~~~-------Ene~~v~~~l~ 401 (434)
T PRK14901 329 ILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATCTLHPA-------ENEAQIEQFLA 401 (434)
T ss_pred EEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCChh-------hHHHHHHHHHH
Confidence 997532 222111 11 2578999999999999998877544211 13566777888
Q ss_pred cC-CCcEE
Q 024008 238 PM-GFQAI 244 (274)
Q Consensus 238 ~~-Gf~~~ 244 (274)
++ +|++.
T Consensus 402 ~~~~~~~~ 409 (434)
T PRK14901 402 RHPDWKLE 409 (434)
T ss_pred hCCCcEec
Confidence 77 57644
No 152
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=99.20 E-value=2.5e-10 Score=102.98 Aligned_cols=126 Identities=19% Similarity=0.183 Sum_probs=95.3
Q ss_pred CCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCC-----CCCCeeEEEecc
Q 024008 108 PKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC-----PTELFDLIFDYT 182 (274)
Q Consensus 108 ~~~~vLDiG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~~~~fD~v~~~~ 182 (274)
++.+|||+|||+|..+..+++...+|+|+|+++.+++.|++++..++. .+++|+.+|+.+.. ..+.||+|+...
T Consensus 292 ~~~~vLDl~cG~G~~sl~la~~~~~V~~vE~~~~av~~a~~n~~~~~~-~nv~~~~~d~~~~l~~~~~~~~~~D~vi~dP 370 (431)
T TIGR00479 292 GEELVVDAYCGVGTFTLPLAKQAKSVVGIEVVPESVEKAQQNAELNGI-ANVEFLAGTLETVLPKQPWAGQIPDVLLLDP 370 (431)
T ss_pred CCCEEEEcCCCcCHHHHHHHHhCCEEEEEEcCHHHHHHHHHHHHHhCC-CceEEEeCCHHHHHHHHHhcCCCCCEEEECc
Confidence 447999999999999999998778999999999999999999988776 47999999986521 235799999765
Q ss_pred cccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcEEEEeecc
Q 024008 183 FFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAISIVDNK 250 (274)
Q Consensus 183 ~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gf~~~~~~~~~ 250 (274)
.-..+. ..+++.+.+ ++|++++++.+.+. +...-.+.+...||++..+...+
T Consensus 371 Pr~G~~----~~~l~~l~~-l~~~~ivyvsc~p~-----------tlard~~~l~~~gy~~~~~~~~D 422 (431)
T TIGR00479 371 PRKGCA----AEVLRTIIE-LKPERIVYVSCNPA-----------TLARDLEFLCKEGYGITWVQPVD 422 (431)
T ss_pred CCCCCC----HHHHHHHHh-cCCCEEEEEcCCHH-----------HHHHHHHHHHHCCeeEEEEEEec
Confidence 533332 344555554 78988887765211 44455566777899988887754
No 153
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=99.20 E-value=6.1e-11 Score=100.33 Aligned_cols=104 Identities=19% Similarity=0.170 Sum_probs=88.7
Q ss_pred CCCCCeEEEEcCCcchhHHHhhCCCC-eEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC-CCCCCCeeEEEeccc
Q 024008 106 ALPKGRALVPGCGTGYDVVAMASPER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT-WCPTELFDLIFDYTF 183 (274)
Q Consensus 106 ~~~~~~vLDiG~G~G~~~~~l~~~~~-~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~~~~~fD~v~~~~~ 183 (274)
..+++.|||+|||+|.+++..++.|+ +|+++|.|. ..+.|++.+..+++.+.++++.+.+.+ ..|.+++|+|++-+.
T Consensus 58 lf~dK~VlDVGcGtGILS~F~akAGA~~V~aVe~S~-ia~~a~~iv~~N~~~~ii~vi~gkvEdi~LP~eKVDiIvSEWM 136 (346)
T KOG1499|consen 58 LFKDKTVLDVGCGTGILSMFAAKAGARKVYAVEASS-IADFARKIVKDNGLEDVITVIKGKVEDIELPVEKVDIIVSEWM 136 (346)
T ss_pred hcCCCEEEEcCCCccHHHHHHHHhCcceEEEEechH-HHHHHHHHHHhcCccceEEEeecceEEEecCccceeEEeehhh
Confidence 35678999999999999999999888 899999865 559999999999998899999999988 445689999999765
Q ss_pred cccc-ChhHHHHHHHHHHhcccCCcEEE
Q 024008 184 FCAI-EPEMRAAWAQKIKDFLKPDGELI 210 (274)
Q Consensus 184 ~~~~-~~~~~~~~l~~l~~~L~~gG~l~ 210 (274)
-..+ .+.++..++-.=-++|+|||.++
T Consensus 137 Gy~Ll~EsMldsVl~ARdkwL~~~G~i~ 164 (346)
T KOG1499|consen 137 GYFLLYESMLDSVLYARDKWLKEGGLIY 164 (346)
T ss_pred hHHHHHhhhhhhhhhhhhhccCCCceEc
Confidence 4443 34677888888899999999976
No 154
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=99.17 E-value=3.9e-10 Score=96.56 Aligned_cols=140 Identities=17% Similarity=0.130 Sum_probs=92.3
Q ss_pred CCeEEEEcCCcchhHHHhhC--CCCeEEEEeCChHHHHHHHHHhhcC-CCCcceEEEE-ccc---CCC--CCCCCeeEEE
Q 024008 109 KGRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSL-PNAKFVSFLK-ADF---FTW--CPTELFDLIF 179 (274)
Q Consensus 109 ~~~vLDiG~G~G~~~~~l~~--~~~~v~~iD~s~~~~~~a~~~~~~~-~~~~~v~~~~-~d~---~~~--~~~~~fD~v~ 179 (274)
..++||||||+|.....++. .+++++|+|+++.+++.|++++..+ ++.+++++.. .|. +.. .+.+.||+|+
T Consensus 115 ~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I~~~~~~~~~~i~~~i~~~~~~fDliv 194 (321)
T PRK11727 115 NVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANPGLNGAIRLRLQKDSKAIFKGIIHKNERFDATL 194 (321)
T ss_pred CceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhccCCcCcEEEEEccchhhhhhcccccCCceEEEE
Confidence 46999999999988777765 5789999999999999999999988 6878888864 332 221 2456899999
Q ss_pred ecccccccChhHH---HHHHHH----------------HHhcccCCcEEEEEEccCCCC----CCCCCcc------cCHH
Q 024008 180 DYTFFCAIEPEMR---AAWAQK----------------IKDFLKPDGELITLMFPISDH----VGGPPYK------VSVS 230 (274)
Q Consensus 180 ~~~~~~~~~~~~~---~~~l~~----------------l~~~L~~gG~l~~~~~~~~~~----~~~~~~~------~~~~ 230 (274)
|+..|+.-..+.. ..-... ..+++.+||.+-++..-..+. .....|. -+..
T Consensus 195 cNPPf~~s~~ea~~~~~rk~r~~ar~~~~~~~l~f~g~~~EL~~~GGe~~fi~~mi~eS~~~~~~~gwftsmv~kk~~l~ 274 (321)
T PRK11727 195 CNPPFHASAAEARAGSQRKLRNLGLNKDKKKVLNFGGQQAELWCEGGEVAFIKRMIEESKAFAKQVLWFTSLVSKKENLP 274 (321)
T ss_pred eCCCCcCcchhhccchhhHHhhhhccCCCccccCCcchhhheeeCCcEeeeehHhhHHHHHHHhhCcEEEEEeeccCCHH
Confidence 9999875432211 111111 234455777754433111100 0000111 2788
Q ss_pred HHHHHHhcCCCcEEEEee
Q 024008 231 DYEEVLQPMGFQAISIVD 248 (274)
Q Consensus 231 ~~~~~~~~~Gf~~~~~~~ 248 (274)
.+.+.+++.|...+.+.+
T Consensus 275 ~l~~~L~~~~~~~~~~~e 292 (321)
T PRK11727 275 PLYRALKKVGAVEVKTIE 292 (321)
T ss_pred HHHHHHHHcCCceEEEEE
Confidence 999999999987666665
No 155
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=99.17 E-value=4.1e-10 Score=95.54 Aligned_cols=136 Identities=16% Similarity=0.164 Sum_probs=109.4
Q ss_pred CeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCeeEEEecccccccCh
Q 024008 110 GRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFCAIEP 189 (274)
Q Consensus 110 ~~vLDiG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~~~~~~~~ 189 (274)
...+|+|.|.|..+..+...-.++-+++++...+..++..+. .| |+.+.+|.++..|.+ |+||..++++|+++
T Consensus 179 ~~avDvGgGiG~v~k~ll~~fp~ik~infdlp~v~~~a~~~~-~g----V~~v~gdmfq~~P~~--daI~mkWiLhdwtD 251 (342)
T KOG3178|consen 179 NVAVDVGGGIGRVLKNLLSKYPHIKGINFDLPFVLAAAPYLA-PG----VEHVAGDMFQDTPKG--DAIWMKWILHDWTD 251 (342)
T ss_pred ceEEEcCCcHhHHHHHHHHhCCCCceeecCHHHHHhhhhhhc-CC----cceecccccccCCCc--CeEEEEeecccCCh
Confidence 689999999999999888843468888888888877777764 43 888999999865554 79999999999999
Q ss_pred hHHHHHHHHHHhcccCCcEEEEEEccCCCC-CCC-------------------CCcccCHHHHHHHHhcCCCcEEEEeec
Q 024008 190 EMRAAWAQKIKDFLKPDGELITLMFPISDH-VGG-------------------PPYKVSVSDYEEVLQPMGFQAISIVDN 249 (274)
Q Consensus 190 ~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~-~~~-------------------~~~~~~~~~~~~~~~~~Gf~~~~~~~~ 249 (274)
++..++++++++.|+|||.+++.+.-.... ..+ .....+..+++.++.++||.+..+...
T Consensus 252 edcvkiLknC~~sL~~~GkIiv~E~V~p~e~~~dd~~s~v~~~~d~lm~~~~~~Gkert~~e~q~l~~~~gF~~~~~~~~ 331 (342)
T KOG3178|consen 252 EDCVKILKNCKKSLPPGGKIIVVENVTPEEDKFDDIDSSVTRDMDLLMLTQTSGGKERTLKEFQALLPEEGFPVCMVALT 331 (342)
T ss_pred HHHHHHHHHHHHhCCCCCEEEEEeccCCCCCCccccccceeehhHHHHHHHhccceeccHHHHHhcchhhcCceeEEEec
Confidence 999999999999999999999988744321 111 012248899999999999999888775
Q ss_pred ccc
Q 024008 250 KLA 252 (274)
Q Consensus 250 ~~~ 252 (274)
...
T Consensus 332 ~~~ 334 (342)
T KOG3178|consen 332 AYS 334 (342)
T ss_pred cCc
Confidence 543
No 156
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=99.16 E-value=1.4e-10 Score=97.95 Aligned_cols=105 Identities=20% Similarity=0.234 Sum_probs=83.9
Q ss_pred CCeEEEEcCCcchhHHHhh----CC------CCeEEEEeCChHHHHHHHHHhhc-----------------------CC-
Q 024008 109 KGRALVPGCGTGYDVVAMA----SP------ERYVVGLEISDIAIKKAEELSSS-----------------------LP- 154 (274)
Q Consensus 109 ~~~vLDiG~G~G~~~~~l~----~~------~~~v~~iD~s~~~~~~a~~~~~~-----------------------~~- 154 (274)
..+|+..||+||.-...++ +. ..+|+|+|+|+.+++.|++-.-. .+
T Consensus 116 ~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~~ 195 (287)
T PRK10611 116 EYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEGL 195 (287)
T ss_pred CEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCce
Confidence 3699999999997643332 21 35899999999999999875311 01
Q ss_pred ------CCcceEEEEcccCCC--CCCCCeeEEEecccccccChhHHHHHHHHHHhcccCCcEEEEEE
Q 024008 155 ------NAKFVSFLKADFFTW--CPTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLM 213 (274)
Q Consensus 155 ------~~~~v~~~~~d~~~~--~~~~~fD~v~~~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~ 213 (274)
+...|+|...|+.+. .+.++||+|+|.+++.|++++....+++++.+.|+|||++++..
T Consensus 196 ~~v~~~lr~~V~F~~~NL~~~~~~~~~~fD~I~cRNvliyF~~~~~~~vl~~l~~~L~pgG~L~lG~ 262 (287)
T PRK10611 196 VRVRQELANYVDFQQLNLLAKQWAVPGPFDAIFCRNVMIYFDKTTQERILRRFVPLLKPDGLLFAGH 262 (287)
T ss_pred EEEChHHHccCEEEcccCCCCCCccCCCcceeeHhhHHhcCCHHHHHHHHHHHHHHhCCCcEEEEeC
Confidence 235689999999873 23578999999999999999899999999999999999987754
No 157
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=99.15 E-value=8.1e-10 Score=93.06 Aligned_cols=110 Identities=19% Similarity=0.123 Sum_probs=84.4
Q ss_pred CCCCCeEEEEcCCcchhHHHhhC---CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCC-CCCCCeeEEEec
Q 024008 106 ALPKGRALVPGCGTGYDVVAMAS---PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW-CPTELFDLIFDY 181 (274)
Q Consensus 106 ~~~~~~vLDiG~G~G~~~~~l~~---~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~~~~~fD~v~~~ 181 (274)
..++.+|||+|||+|..+..++. ....|+++|+++.+++.+++++...+. .++.++..|.... ...+.||.|++.
T Consensus 69 ~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~-~~v~~~~~D~~~~~~~~~~fD~Vl~D 147 (264)
T TIGR00446 69 PDPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGV-LNVAVTNFDGRVFGAAVPKFDAILLD 147 (264)
T ss_pred CCCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCC-CcEEEecCCHHHhhhhccCCCEEEEc
Confidence 34668999999999999988876 235899999999999999999988876 3589999998653 234569999975
Q ss_pred ccccc-------------cChh-------HHHHHHHHHHhcccCCcEEEEEEccC
Q 024008 182 TFFCA-------------IEPE-------MRAAWAQKIKDFLKPDGELITLMFPI 216 (274)
Q Consensus 182 ~~~~~-------------~~~~-------~~~~~l~~l~~~L~~gG~l~~~~~~~ 216 (274)
..... +.++ ....++..+.+.|+|||+++....+.
T Consensus 148 ~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstcs~ 202 (264)
T TIGR00446 148 APCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYSTCSL 202 (264)
T ss_pred CCCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence 43221 1111 12468899999999999998877554
No 158
>PLN02366 spermidine synthase
Probab=99.15 E-value=6.5e-10 Score=95.08 Aligned_cols=107 Identities=18% Similarity=0.189 Sum_probs=81.5
Q ss_pred CCCCeEEEEcCCcchhHHHhhC-CC-CeEEEEeCChHHHHHHHHHhhcCC--C-CcceEEEEcccCCC---CCCCCeeEE
Q 024008 107 LPKGRALVPGCGTGYDVVAMAS-PE-RYVVGLEISDIAIKKAEELSSSLP--N-AKFVSFLKADFFTW---CPTELFDLI 178 (274)
Q Consensus 107 ~~~~~vLDiG~G~G~~~~~l~~-~~-~~v~~iD~s~~~~~~a~~~~~~~~--~-~~~v~~~~~d~~~~---~~~~~fD~v 178 (274)
..+.+||+||||.|..+..+++ ++ .+|+.+|+++.+++.+++..+..+ + +++++++.+|.... .+.++||+|
T Consensus 90 ~~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~yDvI 169 (308)
T PLN02366 90 PNPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGTYDAI 169 (308)
T ss_pred CCCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCCCCEE
Confidence 3468999999999999999988 33 589999999999999999876431 2 46899999998662 235689999
Q ss_pred EecccccccChh--HHHHHHHHHHhcccCCcEEEEEE
Q 024008 179 FDYTFFCAIEPE--MRAAWAQKIKDFLKPDGELITLM 213 (274)
Q Consensus 179 ~~~~~~~~~~~~--~~~~~l~~l~~~L~~gG~l~~~~ 213 (274)
++...-...+.. ....+++.+.++|+|||++++..
T Consensus 170 i~D~~dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~q~ 206 (308)
T PLN02366 170 IVDSSDPVGPAQELFEKPFFESVARALRPGGVVCTQA 206 (308)
T ss_pred EEcCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEECc
Confidence 975432221111 13578899999999999987643
No 159
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=99.15 E-value=4.4e-10 Score=90.15 Aligned_cols=125 Identities=24% Similarity=0.241 Sum_probs=90.4
Q ss_pred CeEEEEcCCcchhHHHhhC--CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC----CCCCCCeeEEEeccc
Q 024008 110 GRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT----WCPTELFDLIFDYTF 183 (274)
Q Consensus 110 ~~vLDiG~G~G~~~~~l~~--~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~----~~~~~~fD~v~~~~~ 183 (274)
..+||||||.|..+..+|. +...++|+|+....+..+..++...++ .|+.++.+|+.. ..+++++|.|+.+.+
T Consensus 19 ~l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~l-~Nv~~~~~da~~~l~~~~~~~~v~~i~i~FP 97 (195)
T PF02390_consen 19 PLILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRGL-KNVRFLRGDARELLRRLFPPGSVDRIYINFP 97 (195)
T ss_dssp EEEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHTT-SSEEEEES-CTTHHHHHSTTTSEEEEEEES-
T ss_pred CeEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhcc-cceEEEEccHHHHHhhcccCCchheEEEeCC
Confidence 3899999999999999987 788999999999999999998887766 579999999987 456789999997644
Q ss_pred ccccChhH------HHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcC--CCcEEE
Q 024008 184 FCAIEPEM------RAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPM--GFQAIS 245 (274)
Q Consensus 184 ~~~~~~~~------~~~~l~~l~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--Gf~~~~ 245 (274)
=-+.-... ...++..+.++|+|||.+.+..-.. .--+++.+.++.. +|..+.
T Consensus 98 DPWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~TD~~----------~y~~~~~~~~~~~~~~f~~~~ 157 (195)
T PF02390_consen 98 DPWPKKRHHKRRLVNPEFLELLARVLKPGGELYFATDVE----------EYAEWMLEQFEESHPGFENIE 157 (195)
T ss_dssp ----SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEEES-H----------HHHHHHHHHHHHHSTTEEEE-
T ss_pred CCCcccchhhhhcCCchHHHHHHHHcCCCCEEEEEeCCH----------HHHHHHHHHHHhcCcCeEEcc
Confidence 22211111 2578999999999999998876111 1235566666663 677664
No 160
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=99.14 E-value=1e-09 Score=93.49 Aligned_cols=142 Identities=18% Similarity=0.167 Sum_probs=110.0
Q ss_pred CccHHHHHHHhcC--CCCCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEc-ccCC-
Q 024008 93 QPAPIIVHLHQSG--ALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKA-DFFT- 168 (274)
Q Consensus 93 ~~~~~~~~~~~~~--~~~~~~vLDiG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~-d~~~- 168 (274)
...|.+.+.+.++ ..++..|||.-||||..++.....|++++|+|++..++.-|+.|+...+..+ ..+... |+..
T Consensus 180 s~~P~lAR~mVNLa~v~~G~~vlDPFcGTGgiLiEagl~G~~viG~Did~~mv~gak~Nl~~y~i~~-~~~~~~~Da~~l 258 (347)
T COG1041 180 SMDPRLARAMVNLARVKRGELVLDPFCGTGGILIEAGLMGARVIGSDIDERMVRGAKINLEYYGIED-YPVLKVLDATNL 258 (347)
T ss_pred CcCHHHHHHHHHHhccccCCEeecCcCCccHHHHhhhhcCceEeecchHHHHHhhhhhhhhhhCcCc-eeEEEecccccC
Confidence 3467777766554 3455799999999999999999999999999999999999999998887543 444444 8888
Q ss_pred CCCCCCeeEEEecccccccC-------hhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCC
Q 024008 169 WCPTELFDLIFDYTFFCAIE-------PEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGF 241 (274)
Q Consensus 169 ~~~~~~fD~v~~~~~~~~~~-------~~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gf 241 (274)
+++.+.+|.|++-..+.-.. ++....+++.+.++|++||++++... ......+++.||
T Consensus 259 pl~~~~vdaIatDPPYGrst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~~p---------------~~~~~~~~~~~f 323 (347)
T COG1041 259 PLRDNSVDAIATDPPYGRSTKIKGEGLDELYEEALESASEVLKPGGRIVFAAP---------------RDPRHELEELGF 323 (347)
T ss_pred CCCCCccceEEecCCCCcccccccccHHHHHHHHHHHHHHHhhcCcEEEEecC---------------CcchhhHhhcCc
Confidence 44555699999987765532 24568899999999999999988762 222345677799
Q ss_pred cEEEEeecc
Q 024008 242 QAISIVDNK 250 (274)
Q Consensus 242 ~~~~~~~~~ 250 (274)
+++......
T Consensus 324 ~v~~~~~~~ 332 (347)
T COG1041 324 KVLGRFTMR 332 (347)
T ss_pred eEEEEEEEe
Confidence 998877644
No 161
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=99.14 E-value=5.5e-10 Score=94.44 Aligned_cols=106 Identities=19% Similarity=0.184 Sum_probs=80.2
Q ss_pred CCCeEEEEcCCcchhHHHhhCC--CCeEEEEeCChHHHHHHHHHhhcCC---CCcceEEEEcccCCC--CCCCCeeEEEe
Q 024008 108 PKGRALVPGCGTGYDVVAMASP--ERYVVGLEISDIAIKKAEELSSSLP---NAKFVSFLKADFFTW--CPTELFDLIFD 180 (274)
Q Consensus 108 ~~~~vLDiG~G~G~~~~~l~~~--~~~v~~iD~s~~~~~~a~~~~~~~~---~~~~v~~~~~d~~~~--~~~~~fD~v~~ 180 (274)
.+.+||++|||+|..+..+++. ..+++++|+++++++.+++..+..+ ..++++++.+|..+. ...++||+|++
T Consensus 72 ~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yDvIi~ 151 (270)
T TIGR00417 72 NPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFDVIIV 151 (270)
T ss_pred CCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCccEEEE
Confidence 3469999999999999888773 3589999999999999999875432 135788999888662 22468999998
Q ss_pred cccccccChhH--HHHHHHHHHhcccCCcEEEEEE
Q 024008 181 YTFFCAIEPEM--RAAWAQKIKDFLKPDGELITLM 213 (274)
Q Consensus 181 ~~~~~~~~~~~--~~~~l~~l~~~L~~gG~l~~~~ 213 (274)
......-+... ...+++.+.+.|+|||++++..
T Consensus 152 D~~~~~~~~~~l~~~ef~~~~~~~L~pgG~lv~~~ 186 (270)
T TIGR00417 152 DSTDPVGPAETLFTKEFYELLKKALNEDGIFVAQS 186 (270)
T ss_pred eCCCCCCcccchhHHHHHHHHHHHhCCCcEEEEcC
Confidence 65422211111 3678899999999999998863
No 162
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=99.14 E-value=1.9e-10 Score=92.24 Aligned_cols=103 Identities=16% Similarity=0.147 Sum_probs=77.3
Q ss_pred CeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC-CCCCCCeeEEEecccccccC
Q 024008 110 GRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT-WCPTELFDLIFDYTFFCAIE 188 (274)
Q Consensus 110 ~~vLDiG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~~~~~fD~v~~~~~~~~~~ 188 (274)
+.++|+|||+|..++.++..--+|+|+|+|+.+++.|++..+..-......+...+... ...++++|+|++..++|+++
T Consensus 35 ~~a~DvG~G~Gqa~~~iae~~k~VIatD~s~~mL~~a~k~~~~~y~~t~~~ms~~~~v~L~g~e~SVDlI~~Aqa~HWFd 114 (261)
T KOG3010|consen 35 RLAWDVGTGNGQAARGIAEHYKEVIATDVSEAMLKVAKKHPPVTYCHTPSTMSSDEMVDLLGGEESVDLITAAQAVHWFD 114 (261)
T ss_pred ceEEEeccCCCcchHHHHHhhhhheeecCCHHHHHHhhcCCCcccccCCccccccccccccCCCcceeeehhhhhHHhhc
Confidence 48999999999888888877669999999999999998876443211123334444444 23468999999999999984
Q ss_pred hhHHHHHHHHHHhcccCCc-EEEEEEcc
Q 024008 189 PEMRAAWAQKIKDFLKPDG-ELITLMFP 215 (274)
Q Consensus 189 ~~~~~~~l~~l~~~L~~gG-~l~~~~~~ 215 (274)
+..+.+.+.++|++.| .+.+-.+.
T Consensus 115 ---le~fy~~~~rvLRk~Gg~iavW~Y~ 139 (261)
T KOG3010|consen 115 ---LERFYKEAYRVLRKDGGLIAVWNYN 139 (261)
T ss_pred ---hHHHHHHHHHHcCCCCCEEEEEEcc
Confidence 4678899999998877 66555554
No 163
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=99.13 E-value=9e-10 Score=90.01 Aligned_cols=150 Identities=19% Similarity=0.175 Sum_probs=101.2
Q ss_pred cHHHHHHHhcCC------CCCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC
Q 024008 95 APIIVHLHQSGA------LPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT 168 (274)
Q Consensus 95 ~~~~~~~~~~~~------~~~~~vLDiG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~ 168 (274)
.....+++.... ....++||||+|.|..+..++..-.+|++.|.|+.|....+++- .+.+..|-.
T Consensus 75 ~~Q~~~LL~~~~~~~~~~~~~~~lLDlGAGdG~VT~~l~~~f~~v~aTE~S~~Mr~rL~~kg--------~~vl~~~~w- 145 (265)
T PF05219_consen 75 EEQFRKLLRISGFSWNPDWKDKSLLDLGAGDGEVTERLAPLFKEVYATEASPPMRWRLSKKG--------FTVLDIDDW- 145 (265)
T ss_pred HHHHHHHhhhhccCCCCcccCCceEEecCCCcHHHHHHHhhcceEEeecCCHHHHHHHHhCC--------CeEEehhhh-
Confidence 445555555321 13468999999999999999886668999999999977766542 233322221
Q ss_pred CCCCCCeeEEEecccccccChhHHHHHHHHHHhcccCCcEEEEEE---ccCCCCC--------------CCCCcccCHHH
Q 024008 169 WCPTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLM---FPISDHV--------------GGPPYKVSVSD 231 (274)
Q Consensus 169 ~~~~~~fD~v~~~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~---~~~~~~~--------------~~~~~~~~~~~ 231 (274)
...+.+||+|.|.+++...+ ....+++.+++.|+|+|++++.. +.+..+. .+..+.-....
T Consensus 146 ~~~~~~fDvIscLNvLDRc~--~P~~LL~~i~~~l~p~G~lilAvVlP~~pyVE~~~g~~~~P~e~l~~~g~~~E~~v~~ 223 (265)
T PF05219_consen 146 QQTDFKFDVISCLNVLDRCD--RPLTLLRDIRRALKPNGRLILAVVLPFRPYVEFGGGKSNRPSELLPVKGATFEEQVSS 223 (265)
T ss_pred hccCCceEEEeehhhhhccC--CHHHHHHHHHHHhCCCCEEEEEEEecccccEEcCCCCCCCchhhcCCCCCcHHHHHHH
Confidence 12245899999999998874 34678999999999999988733 1111111 11112223444
Q ss_pred HHHHHhcCCCcEEEEeecccccCC
Q 024008 232 YEEVLQPMGFQAISIVDNKLAIGP 255 (274)
Q Consensus 232 ~~~~~~~~Gf~~~~~~~~~~~~~~ 255 (274)
+.+.|+.+||+++.....+.-..+
T Consensus 224 l~~v~~p~GF~v~~~tr~PYLcEG 247 (265)
T PF05219_consen 224 LVNVFEPAGFEVERWTRLPYLCEG 247 (265)
T ss_pred HHHHHHhcCCEEEEEeccCccccC
Confidence 558899999999998886665444
No 164
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=99.13 E-value=7.2e-10 Score=88.90 Aligned_cols=154 Identities=20% Similarity=0.265 Sum_probs=102.3
Q ss_pred cHHHHHHHhcCCCCCCeEEEEcCCcchhHHHhhC--CCCeEEEEeCChHHHHHHHHHhhcCC-----C------------
Q 024008 95 APIIVHLHQSGALPKGRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLP-----N------------ 155 (274)
Q Consensus 95 ~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~--~~~~v~~iD~s~~~~~~a~~~~~~~~-----~------------ 155 (274)
.+.+..+ +.....+..+|||||..|.++..+++ ....+.|+|+++..+..|+++.+... +
T Consensus 46 D~rLk~L-~~~~f~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~ 124 (288)
T KOG2899|consen 46 DPRLKVL-EKDWFEPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQF 124 (288)
T ss_pred Chhhhhc-cccccCcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhccccccccccccCCCcccccccc
Confidence 4444444 33345668999999999999999998 33479999999999999999865431 0
Q ss_pred -----------------Ccce-------EEEEcccCCCCCCCCeeEEEeccc--cccc--ChhHHHHHHHHHHhcccCCc
Q 024008 156 -----------------AKFV-------SFLKADFFTWCPTELFDLIFDYTF--FCAI--EPEMRAAWAQKIKDFLKPDG 207 (274)
Q Consensus 156 -----------------~~~v-------~~~~~d~~~~~~~~~fD~v~~~~~--~~~~--~~~~~~~~l~~l~~~L~~gG 207 (274)
.+++ .+...|+. ......||+|+|..+ +.|+ .++-+..++.++.++|.|||
T Consensus 125 ~~is~~~~a~~a~t~~~p~n~~f~~~n~vle~~dfl-~~~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~pgG 203 (288)
T KOG2899|consen 125 GPISQRNEADRAFTTDFPDNVWFQKENYVLESDDFL-DMIQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHPGG 203 (288)
T ss_pred ccccccccccccccccCCcchhcccccEEEecchhh-hhccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCcCc
Confidence 0112 22222232 233468999999755 3333 34667899999999999999
Q ss_pred EEEEEEccCCC-----------CCCCCCcccCHHHHHHHHhcCCCcEEEEeecc
Q 024008 208 ELITLMFPISD-----------HVGGPPYKVSVSDYEEVLQPMGFQAISIVDNK 250 (274)
Q Consensus 208 ~l~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~Gf~~~~~~~~~ 250 (274)
++++.-.+=.. ...-....+.++.+..++.+.+--...+++..
T Consensus 204 iLvvEPQpWksY~kaar~~e~~~~ny~~i~lkp~~f~~~l~q~~vgle~~e~~~ 257 (288)
T KOG2899|consen 204 ILVVEPQPWKSYKKAARRSEKLAANYFKIFLKPEDFEDWLNQIVVGLESVEDLG 257 (288)
T ss_pred EEEEcCCchHHHHHHHHHHHHhhcCccceecCHHHHHhhhhhhhhheeeecccc
Confidence 99985422100 00111234688999999998865555555544
No 165
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=99.12 E-value=4.5e-10 Score=88.53 Aligned_cols=105 Identities=21% Similarity=0.214 Sum_probs=73.9
Q ss_pred CCCCCeEEEEcCCcchhHHHhhCC--CCeEEEEeCChHHHHHHHHHhhcCC--CCcceEEEEcccCCC-----CCCCCee
Q 024008 106 ALPKGRALVPGCGTGYDVVAMASP--ERYVVGLEISDIAIKKAEELSSSLP--NAKFVSFLKADFFTW-----CPTELFD 176 (274)
Q Consensus 106 ~~~~~~vLDiG~G~G~~~~~l~~~--~~~v~~iD~s~~~~~~a~~~~~~~~--~~~~v~~~~~d~~~~-----~~~~~fD 176 (274)
..++.+|||+|||+|..++.++.. ..+|+..|.++ .++..+.++..++ ...++.+...|..+. ...++||
T Consensus 43 ~~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~-~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~~~~~~D 121 (173)
T PF10294_consen 43 LFRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNE-VLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLLEPHSFD 121 (173)
T ss_dssp GTTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S--HHHHHHHHHHTT--------EEEE--TTS-HHHHHHS-SSBS
T ss_pred hcCCceEEEECCccchhHHHHHhccCCceEEEeccch-hhHHHHHHHHhccccccccccCcEEEecCcccccccccccCC
Confidence 345689999999999999999886 66999999988 9999999998876 456788998887651 2346899
Q ss_pred EEEecccccccChhHHHHHHHHHHhcccCCcEEEEEE
Q 024008 177 LIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLM 213 (274)
Q Consensus 177 ~v~~~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~ 213 (274)
+|++..+++. ++....++..+.++++++|.+++..
T Consensus 122 ~IlasDv~Y~--~~~~~~L~~tl~~ll~~~~~vl~~~ 156 (173)
T PF10294_consen 122 VILASDVLYD--EELFEPLVRTLKRLLKPNGKVLLAY 156 (173)
T ss_dssp EEEEES--S---GGGHHHHHHHHHHHBTT-TTEEEEE
T ss_pred EEEEecccch--HHHHHHHHHHHHHHhCCCCEEEEEe
Confidence 9999999885 3667889999999999999866554
No 166
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=99.12 E-value=9.2e-10 Score=92.21 Aligned_cols=105 Identities=18% Similarity=0.207 Sum_probs=86.0
Q ss_pred CCCCCeEEEEcCCcchhHHHhhCCCC-eEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCeeEEEecccc
Q 024008 106 ALPKGRALVPGCGTGYDVVAMASPER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFF 184 (274)
Q Consensus 106 ~~~~~~vLDiG~G~G~~~~~l~~~~~-~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~~~ 184 (274)
..+++.|||+|||+|.++...+..|+ +|+++|. +++.+.|+..+..+.+.+++.++.+.+.+...+++.|+|++-..-
T Consensus 175 DF~~kiVlDVGaGSGILS~FAaqAGA~~vYAvEA-S~MAqyA~~Lv~~N~~~~rItVI~GKiEdieLPEk~DviISEPMG 253 (517)
T KOG1500|consen 175 DFQDKIVLDVGAGSGILSFFAAQAGAKKVYAVEA-SEMAQYARKLVASNNLADRITVIPGKIEDIELPEKVDVIISEPMG 253 (517)
T ss_pred ccCCcEEEEecCCccHHHHHHHHhCcceEEEEeh-hHHHHHHHHHHhcCCccceEEEccCccccccCchhccEEEeccch
Confidence 56678999999999999999999887 8999997 568999999999998999999999999997778899999976443
Q ss_pred ccc-ChhHHHHHHHHHHhcccCCcEEEEE
Q 024008 185 CAI-EPEMRAAWAQKIKDFLKPDGELITL 212 (274)
Q Consensus 185 ~~~-~~~~~~~~l~~l~~~L~~gG~l~~~ 212 (274)
..+ .+.+++.++ ..++.|+|.|.++-.
T Consensus 254 ~mL~NERMLEsYl-~Ark~l~P~GkMfPT 281 (517)
T KOG1500|consen 254 YMLVNERMLESYL-HARKWLKPNGKMFPT 281 (517)
T ss_pred hhhhhHHHHHHHH-HHHhhcCCCCcccCc
Confidence 322 334455554 455999999997643
No 167
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=99.12 E-value=3.2e-10 Score=101.67 Aligned_cols=102 Identities=20% Similarity=0.153 Sum_probs=79.1
Q ss_pred CCeEEEEcCCcchhHHHhhCCC------CeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCeeEEEecc
Q 024008 109 KGRALVPGCGTGYDVVAMASPE------RYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYT 182 (274)
Q Consensus 109 ~~~vLDiG~G~G~~~~~l~~~~------~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~ 182 (274)
+..|||+|||+|.++...++.+ .+|++||-++.++...++++..+++.++|+++.+|+.+...+.++|+|++=.
T Consensus 187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w~~~V~vi~~d~r~v~lpekvDIIVSEl 266 (448)
T PF05185_consen 187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGWGDKVTVIHGDMREVELPEKVDIIVSEL 266 (448)
T ss_dssp T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTTTTTEEEEES-TTTSCHSS-EEEEEE--
T ss_pred ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCCCCeEEEEeCcccCCCCCCceeEEEEec
Confidence 4689999999999987766643 4999999999999888888777788889999999999977778999999854
Q ss_pred cccccChhHHHHHHHHHHhcccCCcEEE
Q 024008 183 FFCAIEPEMRAAWAQKIKDFLKPDGELI 210 (274)
Q Consensus 183 ~~~~~~~~~~~~~l~~l~~~L~~gG~l~ 210 (274)
.=...+.+.....+....+.|+|||+++
T Consensus 267 LGsfg~nEl~pE~Lda~~rfLkp~Gi~I 294 (448)
T PF05185_consen 267 LGSFGDNELSPECLDAADRFLKPDGIMI 294 (448)
T ss_dssp -BTTBTTTSHHHHHHHGGGGEEEEEEEE
T ss_pred cCCccccccCHHHHHHHHhhcCCCCEEe
Confidence 4333344556678889999999999876
No 168
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=99.10 E-value=2.8e-09 Score=84.47 Aligned_cols=127 Identities=20% Similarity=0.293 Sum_probs=92.4
Q ss_pred CCCCeEEEEcCCcchhHHHhhC--CCCe---------EEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCC-CCCC
Q 024008 107 LPKGRALVPGCGTGYDVVAMAS--PERY---------VVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC-PTEL 174 (274)
Q Consensus 107 ~~~~~vLDiG~G~G~~~~~l~~--~~~~---------v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-~~~~ 174 (274)
.++..|||.-||+|.+++..+. .... ++|+|+++.++..|++|+...++...+.+...|+.... .++.
T Consensus 27 ~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~~~i~~~~~D~~~l~~~~~~ 106 (179)
T PF01170_consen 27 RPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVEDYIDFIQWDARELPLPDGS 106 (179)
T ss_dssp -TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-CGGEEEEE--GGGGGGTTSB
T ss_pred CCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccCCceEEEecchhhcccccCC
Confidence 3457999999999999987765 3333 89999999999999999999988888999999999855 6789
Q ss_pred eeEEEeccccccc-Ch-----hHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcEEEEee
Q 024008 175 FDLIFDYTFFCAI-EP-----EMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAISIVD 248 (274)
Q Consensus 175 fD~v~~~~~~~~~-~~-----~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gf~~~~~~~ 248 (274)
+|.|+++..+..- .. .....+++.+.+++++ ..+++.. ....+.+.+...+++......
T Consensus 107 ~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~-~~v~l~~--------------~~~~~~~~~~~~~~~~~~~~~ 171 (179)
T PF01170_consen 107 VDAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKP-RAVFLTT--------------SNRELEKALGLKGWRKRKLYN 171 (179)
T ss_dssp SCEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTT-CEEEEEE--------------SCCCHHHHHTSTTSEEEEEEE
T ss_pred CCEEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCC-CEEEEEE--------------CCHHHHHHhcchhhceEEEEE
Confidence 9999999988753 21 2345678888999998 4344433 345677888888887766554
No 169
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=99.09 E-value=2e-09 Score=86.00 Aligned_cols=104 Identities=12% Similarity=-0.048 Sum_probs=79.8
Q ss_pred CCCCeEEEEcCCcchhHHHhhCCCC-eEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCC----CC-CCeeEEEe
Q 024008 107 LPKGRALVPGCGTGYDVVAMASPER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC----PT-ELFDLIFD 180 (274)
Q Consensus 107 ~~~~~vLDiG~G~G~~~~~l~~~~~-~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~----~~-~~fD~v~~ 180 (274)
.++.+|||++||+|.+++.++..|+ +|+++|.++.+++.+++++...+..++++++.+|+.... .. ..||+|+.
T Consensus 48 ~~g~~vLDLfaGsG~lglea~srga~~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~~l~~~~~~~~~~dvv~~ 127 (189)
T TIGR00095 48 IQGAHLLDVFAGSGLLGEEALSRGAKVAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALRALKFLAKKPTFDNVIYL 127 (189)
T ss_pred cCCCEEEEecCCCcHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHHHHHHhhccCCCceEEEE
Confidence 3568999999999999999999887 899999999999999999988877667999999996621 12 24788888
Q ss_pred cccccccChhHHHHHHHHHH--hcccCCcEEEEEE
Q 024008 181 YTFFCAIEPEMRAAWAQKIK--DFLKPDGELITLM 213 (274)
Q Consensus 181 ~~~~~~~~~~~~~~~l~~l~--~~L~~gG~l~~~~ 213 (274)
...+..- ....++..+. .+|+++|.+++..
T Consensus 128 DPPy~~~---~~~~~l~~l~~~~~l~~~~iiv~E~ 159 (189)
T TIGR00095 128 DPPFFNG---ALQALLELCENNWILEDTVLIVVEE 159 (189)
T ss_pred CcCCCCC---cHHHHHHHHHHCCCCCCCeEEEEEe
Confidence 7776532 2233444443 4688888777654
No 170
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=99.09 E-value=7.4e-10 Score=87.57 Aligned_cols=141 Identities=15% Similarity=0.177 Sum_probs=90.0
Q ss_pred hhHhhhcCCCCccCCCccHHHHHHHhcCCCCCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCc
Q 024008 78 WEKCWEEGLTPWDIGQPAPIIVHLHQSGALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAK 157 (274)
Q Consensus 78 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~ 157 (274)
|.+.|.+....|- ..|...+.+.+... .+...|.|+|||.+.++..+ ..+.+|..+|+-+.
T Consensus 44 YH~Gfr~Qv~~WP-~nPvd~iI~~l~~~-~~~~viaD~GCGdA~la~~~-~~~~~V~SfDLva~---------------- 104 (219)
T PF05148_consen 44 YHEGFRQQVKKWP-VNPVDVIIEWLKKR-PKSLVIADFGCGDAKLAKAV-PNKHKVHSFDLVAP---------------- 104 (219)
T ss_dssp HHHHHHHHHCTSS-S-HHHHHHHHHCTS--TTS-EEEES-TT-HHHHH---S---EEEEESS-S----------------
T ss_pred HHHHHHHHHhcCC-CCcHHHHHHHHHhc-CCCEEEEECCCchHHHHHhc-ccCceEEEeeccCC----------------
Confidence 3455555555665 33445555555532 22369999999999999665 35578999998542
Q ss_pred ceEEEEcccCC-CCCCCCeeEEEecccccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHH
Q 024008 158 FVSFLKADFFT-WCPTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVL 236 (274)
Q Consensus 158 ~v~~~~~d~~~-~~~~~~fD~v~~~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (274)
+-.+..+|+.+ +.+++.+|++++...+.. .+...++.+..|+||+||.+.|.+-... +-+.+.+.+.+
T Consensus 105 n~~Vtacdia~vPL~~~svDv~VfcLSLMG---Tn~~~fi~EA~RvLK~~G~L~IAEV~SR--------f~~~~~F~~~~ 173 (219)
T PF05148_consen 105 NPRVTACDIANVPLEDESVDVAVFCLSLMG---TNWPDFIREANRVLKPGGILKIAEVKSR--------FENVKQFIKAL 173 (219)
T ss_dssp STTEEES-TTS-S--TT-EEEEEEES---S---S-HHHHHHHHHHHEEEEEEEEEEEEGGG---------S-HHHHHHHH
T ss_pred CCCEEEecCccCcCCCCceeEEEEEhhhhC---CCcHHHHHHHHheeccCcEEEEEEeccc--------CcCHHHHHHHH
Confidence 23477899987 778899999998877765 3667899999999999999999884332 22688999999
Q ss_pred hcCCCcEEEEee
Q 024008 237 QPMGFQAISIVD 248 (274)
Q Consensus 237 ~~~Gf~~~~~~~ 248 (274)
+..||++...+.
T Consensus 174 ~~~GF~~~~~d~ 185 (219)
T PF05148_consen 174 KKLGFKLKSKDE 185 (219)
T ss_dssp HCTTEEEEEEE-
T ss_pred HHCCCeEEeccc
Confidence 999999988654
No 171
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=99.07 E-value=2.2e-09 Score=94.00 Aligned_cols=135 Identities=21% Similarity=0.130 Sum_probs=101.2
Q ss_pred CCCeEEEEcCCcchhHHHhhCCCC-eEEEEeCChHHHHHHHHHhhcCCCC-cceEEEEcccCCCC-----CCCCeeEEEe
Q 024008 108 PKGRALVPGCGTGYDVVAMASPER-YVVGLEISDIAIKKAEELSSSLPNA-KFVSFLKADFFTWC-----PTELFDLIFD 180 (274)
Q Consensus 108 ~~~~vLDiG~G~G~~~~~l~~~~~-~v~~iD~s~~~~~~a~~~~~~~~~~-~~v~~~~~d~~~~~-----~~~~fD~v~~ 180 (274)
.+++|||+-|=||..+...+..|+ +|++||.|..+++.|++|+..+++. .++.|+++|+++.. ...+||+|+.
T Consensus 217 ~GkrvLNlFsYTGgfSv~Aa~gGA~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~~l~~~~~~g~~fDlIil 296 (393)
T COG1092 217 AGKRVLNLFSYTGGFSVHAALGGASEVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVFKWLRKAERRGEKFDLIIL 296 (393)
T ss_pred cCCeEEEecccCcHHHHHHHhcCCCceEEEeccHHHHHHHHHHHHhcCCCccceeeehhhHHHHHHHHHhcCCcccEEEE
Confidence 378999999999999999999999 9999999999999999999999874 56899999999832 2358999997
Q ss_pred ccc-ccccC------hhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcEEEEe
Q 024008 181 YTF-FCAIE------PEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAISIV 247 (274)
Q Consensus 181 ~~~-~~~~~------~~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gf~~~~~~ 247 (274)
-.+ |..-. ..+...++..+.++|+|||.++++.....-. ...-.+.+.+.+...|.....+.
T Consensus 297 DPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s~~~~~~-----~~~f~~~i~~a~~~~~~~~~~~~ 365 (393)
T COG1092 297 DPPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSSCSRHFS-----SDLFLEIIARAAAAAGRRAQEIE 365 (393)
T ss_pred CCcccccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEEecCCccC-----HHHHHHHHHHHHHhcCCcEEEee
Confidence 543 22111 1234678899999999999999887543211 01123445555666666655554
No 172
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=99.06 E-value=1.9e-09 Score=89.89 Aligned_cols=105 Identities=21% Similarity=0.225 Sum_probs=84.8
Q ss_pred CCeEEEEcCCcchhHHH----hhC--C-----CCeEEEEeCChHHHHHHHHHhhc-----CC------------------
Q 024008 109 KGRALVPGCGTGYDVVA----MAS--P-----ERYVVGLEISDIAIKKAEELSSS-----LP------------------ 154 (274)
Q Consensus 109 ~~~vLDiG~G~G~~~~~----l~~--~-----~~~v~~iD~s~~~~~~a~~~~~~-----~~------------------ 154 (274)
.-+|.-+||+||.-... +.+ . ..+|+|+|+|..+++.|+.-.-. .+
T Consensus 97 ~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~y 176 (268)
T COG1352 97 PIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGSY 176 (268)
T ss_pred ceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCcE
Confidence 56999999999965432 222 1 35899999999999999764333 11
Q ss_pred -----CCcceEEEEcccCCCC-CCCCeeEEEecccccccChhHHHHHHHHHHhcccCCcEEEEEE
Q 024008 155 -----NAKFVSFLKADFFTWC-PTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLM 213 (274)
Q Consensus 155 -----~~~~v~~~~~d~~~~~-~~~~fD~v~~~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~ 213 (274)
+...|.|...|+.... ..+.||+|+|.+|+.+++.+....++.+++..|+|||.+++..
T Consensus 177 ~v~~~ir~~V~F~~~NLl~~~~~~~~fD~IfCRNVLIYFd~~~q~~il~~f~~~L~~gG~LflG~ 241 (268)
T COG1352 177 RVKEELRKMVRFRRHNLLDDSPFLGKFDLIFCRNVLIYFDEETQERILRRFADSLKPGGLLFLGH 241 (268)
T ss_pred EEChHHhcccEEeecCCCCCccccCCCCEEEEcceEEeeCHHHHHHHHHHHHHHhCCCCEEEEcc
Confidence 1236889999998744 6678999999999999999888999999999999999999865
No 173
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=99.06 E-value=1.9e-09 Score=88.03 Aligned_cols=106 Identities=17% Similarity=0.164 Sum_probs=83.3
Q ss_pred CCCeEEEEcCCcchhHHHhhC--CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC------CCCCCCeeEEE
Q 024008 108 PKGRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT------WCPTELFDLIF 179 (274)
Q Consensus 108 ~~~~vLDiG~G~G~~~~~l~~--~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~------~~~~~~fD~v~ 179 (274)
.+..|||+|||+|..+..++. +...++++|.|+.++..|.+|+....+.+++..+.-+... ....+++|+++
T Consensus 148 ~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~qr~~l~g~i~v~~~~me~d~~~~~~l~~~~~dllv 227 (328)
T KOG2904|consen 148 KHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQRLKLSGRIEVIHNIMESDASDEHPLLEGKIDLLV 227 (328)
T ss_pred ccceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHHHHHHHhhcCceEEEecccccccccccccccCceeEEe
Confidence 345899999999999999887 6679999999999999999999999888888888554443 23458999999
Q ss_pred ecccccccCh------------------------hHHHHHHHHHHhcccCCcEEEEEE
Q 024008 180 DYTFFCAIEP------------------------EMRAAWAQKIKDFLKPDGELITLM 213 (274)
Q Consensus 180 ~~~~~~~~~~------------------------~~~~~~l~~l~~~L~~gG~l~~~~ 213 (274)
++..+..-++ +....+..-..+.|+|||.+.+..
T Consensus 228 sNPPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~~~le~ 285 (328)
T KOG2904|consen 228 SNPPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGGFEQLEL 285 (328)
T ss_pred cCCCcccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhcccCCeEEEEe
Confidence 9977643211 112456677788999999888765
No 174
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=99.04 E-value=7.9e-09 Score=78.39 Aligned_cols=105 Identities=19% Similarity=0.152 Sum_probs=89.6
Q ss_pred CCCCeEEEEcCCcchhHHHhhCCC---CeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCC------CCCCCeeE
Q 024008 107 LPKGRALVPGCGTGYDVVAMASPE---RYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW------CPTELFDL 177 (274)
Q Consensus 107 ~~~~~vLDiG~G~G~~~~~l~~~~---~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~------~~~~~fD~ 177 (274)
.++.-|||+|.|||..+..+.+.| ..++++|++++.+....+..+ .++++.+|.+.. .....||.
T Consensus 47 esglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~p------~~~ii~gda~~l~~~l~e~~gq~~D~ 120 (194)
T COG3963 47 ESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLYP------GVNIINGDAFDLRTTLGEHKGQFFDS 120 (194)
T ss_pred ccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhCC------CccccccchhhHHHHHhhcCCCeeee
Confidence 345699999999999999998854 489999999999999998884 467899999873 23457999
Q ss_pred EEecccccccChhHHHHHHHHHHhcccCCcEEEEEEccCC
Q 024008 178 IFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPIS 217 (274)
Q Consensus 178 v~~~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~~~~ 217 (274)
|++.-.+-.++....-++++.+...|.+||.++...+++-
T Consensus 121 viS~lPll~~P~~~~iaile~~~~rl~~gg~lvqftYgp~ 160 (194)
T COG3963 121 VISGLPLLNFPMHRRIAILESLLYRLPAGGPLVQFTYGPL 160 (194)
T ss_pred EEeccccccCcHHHHHHHHHHHHHhcCCCCeEEEEEecCC
Confidence 9999888888888888999999999999999999988753
No 175
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=99.03 E-value=2e-09 Score=90.64 Aligned_cols=139 Identities=22% Similarity=0.144 Sum_probs=94.6
Q ss_pred CCCCeEEEEcCCcchhHHHhhCCCC-eEEEEeCChHHHHHHHHHhhcCCCC-cceEEEEcccCCCC----CCCCeeEEEe
Q 024008 107 LPKGRALVPGCGTGYDVVAMASPER-YVVGLEISDIAIKKAEELSSSLPNA-KFVSFLKADFFTWC----PTELFDLIFD 180 (274)
Q Consensus 107 ~~~~~vLDiG~G~G~~~~~l~~~~~-~v~~iD~s~~~~~~a~~~~~~~~~~-~~v~~~~~d~~~~~----~~~~fD~v~~ 180 (274)
..+.+|||+-|-||.++...+..|+ +|+.||.|..+++.+++|+..+++. .+++|+..|+++.. ..++||+|++
T Consensus 122 ~~gkrvLnlFsYTGgfsv~Aa~gGA~~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf~~l~~~~~~~~fD~IIl 201 (286)
T PF10672_consen 122 AKGKRVLNLFSYTGGFSVAAAAGGAKEVVSVDSSKRALEWAKENAALNGLDLDRHRFIQGDVFKFLKRLKKGGRFDLIIL 201 (286)
T ss_dssp CTTCEEEEET-TTTHHHHHHHHTTESEEEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES-HHHHHHHHHHTT-EEEEEE
T ss_pred cCCCceEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHHHhcCCCCCEEEE
Confidence 3468999999999999999888887 7999999999999999999998875 67999999998722 2468999997
Q ss_pred ccc-cccc--C-hhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCC--CcEEEEeecccccC
Q 024008 181 YTF-FCAI--E-PEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMG--FQAISIVDNKLAIG 254 (274)
Q Consensus 181 ~~~-~~~~--~-~~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G--f~~~~~~~~~~~~~ 254 (274)
-.+ |..- . ......++..+.++|+|||.++++..+. .++.+.+.+.+.+++ ++.++.-..+..++
T Consensus 202 DPPsF~k~~~~~~~~y~~L~~~a~~ll~~gG~l~~~scs~---------~i~~~~l~~~~~~~a~~~~~~~~~~~p~df~ 272 (286)
T PF10672_consen 202 DPPSFAKSKFDLERDYKKLLRRAMKLLKPGGLLLTCSCSH---------HISPDFLLEAVAEAAREVEFIERLGQPPDFP 272 (286)
T ss_dssp --SSEESSTCEHHHHHHHHHHHHHHTEEEEEEEEEEE--T---------TS-HHHHHHHHHHHHHHCEEEEEEE------
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEcCCc---------ccCHHHHHHHHHHhCccceEeeeeccccccc
Confidence 643 2211 0 1345678899999999999988776433 346677777776665 44444433443333
No 176
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=99.02 E-value=4.4e-09 Score=92.50 Aligned_cols=136 Identities=17% Similarity=0.079 Sum_probs=95.7
Q ss_pred CCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCC-----------------
Q 024008 109 KGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP----------------- 171 (274)
Q Consensus 109 ~~~vLDiG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~----------------- 171 (274)
+.+|||++||+|.++..+++...+|+++|.++.+++.|++++..++. .+++|+.+|+.+...
T Consensus 207 ~~~vLDl~~G~G~~sl~la~~~~~v~~vE~~~~ai~~a~~N~~~~~~-~~v~~~~~d~~~~l~~~~~~~~~~~~~~~~~~ 285 (362)
T PRK05031 207 KGDLLELYCGNGNFTLALARNFRRVLATEISKPSVAAAQYNIAANGI-DNVQIIRMSAEEFTQAMNGVREFNRLKGIDLK 285 (362)
T ss_pred CCeEEEEeccccHHHHHHHhhCCEEEEEECCHHHHHHHHHHHHHhCC-CcEEEEECCHHHHHHHHhhccccccccccccc
Confidence 35799999999999999988767999999999999999999988876 379999999976211
Q ss_pred CCCeeEEEecccccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccC-HHHHHHHHhcCCCcEEEEeecc
Q 024008 172 TELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVS-VSDYEEVLQPMGFQAISIVDNK 250 (274)
Q Consensus 172 ~~~fD~v~~~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~Gf~~~~~~~~~ 250 (274)
..+||+|+....-..+. ..+++.+.+ +++++++.+.+. + ..++.. |.+ ||++..+...+
T Consensus 286 ~~~~D~v~lDPPR~G~~----~~~l~~l~~---~~~ivyvSC~p~-----------tlarDl~~-L~~-gY~l~~v~~~D 345 (362)
T PRK05031 286 SYNFSTIFVDPPRAGLD----DETLKLVQA---YERILYISCNPE-----------TLCENLET-LSQ-THKVERFALFD 345 (362)
T ss_pred CCCCCEEEECCCCCCCc----HHHHHHHHc---cCCEEEEEeCHH-----------HHHHHHHH-HcC-CcEEEEEEEcc
Confidence 12589999766643332 344455544 678888877322 3 334444 444 99999888755
Q ss_pred cccCCccchhHHHHhh
Q 024008 251 LAIGPRKGREKLGRWK 266 (274)
Q Consensus 251 ~~~~~~~~~~~~~~~~ 266 (274)
. ++.-...|.+..+.
T Consensus 346 m-FPqT~HvE~v~lL~ 360 (362)
T PRK05031 346 Q-FPYTHHMECGVLLE 360 (362)
T ss_pred c-CCCCCcEEEEEEEE
Confidence 3 22223566655543
No 177
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=99.01 E-value=2.3e-08 Score=83.31 Aligned_cols=136 Identities=24% Similarity=0.281 Sum_probs=99.8
Q ss_pred CCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhc---CC-------------------------------
Q 024008 109 KGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSS---LP------------------------------- 154 (274)
Q Consensus 109 ~~~vLDiG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~---~~------------------------------- 154 (274)
+.+||-.|||.|+++..++..|..+.|.|.|--|+-...-.+.. .+
T Consensus 57 ~~~VLVPGsGLGRLa~Eia~~G~~~~gnE~S~~Mll~s~fiLn~~~~~~~~~I~Pf~~~~sn~~~~~dqlr~v~iPDv~p 136 (270)
T PF07942_consen 57 KIRVLVPGSGLGRLAWEIAKLGYAVQGNEFSYFMLLASNFILNHCSQPNQFTIYPFVHSFSNQKSREDQLRPVRIPDVDP 136 (270)
T ss_pred ccEEEEcCCCcchHHHHHhhccceEEEEEchHHHHHHHHHHHcccCCCCcEEEecceecccCCCCHHHhCCceEeCCcCc
Confidence 36999999999999999999999999999998886554432211 10
Q ss_pred -----CCcceEEEEcccCCCC-C---CCCeeEEEecccccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCC---
Q 024008 155 -----NAKFVSFLKADFFTWC-P---TELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGG--- 222 (274)
Q Consensus 155 -----~~~~v~~~~~d~~~~~-~---~~~fD~v~~~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~~~~--- 222 (274)
...++....||+.+.. + .++||+|++...+.-. .+.-.+++.+.++|||||.++ .+++..-...
T Consensus 137 ~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~FFIDTA--~Ni~~Yi~tI~~lLkpgG~WI--N~GPLlyh~~~~~ 212 (270)
T PF07942_consen 137 SSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTCFFIDTA--ENIIEYIETIEHLLKPGGYWI--NFGPLLYHFEPMS 212 (270)
T ss_pred ccccCCCCceeEecCccEEecCCcccCCcccEEEEEEEeech--HHHHHHHHHHHHHhccCCEEE--ecCCccccCCCCC
Confidence 1235677788888732 2 2689999988655533 567789999999999999554 3333222111
Q ss_pred ----CCcccCHHHHHHHHhcCCCcEEEEee
Q 024008 223 ----PPYKVSVSDYEEVLQPMGFQAISIVD 248 (274)
Q Consensus 223 ----~~~~~~~~~~~~~~~~~Gf~~~~~~~ 248 (274)
....++.+|+.++++..||+++.-+.
T Consensus 213 ~~~~~sveLs~eEi~~l~~~~GF~~~~~~~ 242 (270)
T PF07942_consen 213 IPNEMSVELSLEEIKELIEKLGFEIEKEES 242 (270)
T ss_pred CCCCcccCCCHHHHHHHHHHCCCEEEEEEE
Confidence 22568999999999999999987666
No 178
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=98.96 E-value=1.9e-09 Score=85.49 Aligned_cols=108 Identities=23% Similarity=0.171 Sum_probs=82.2
Q ss_pred CCCCeEEEEcCCcchhHHHhhCCCC-eEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCC-----CCCCeeEEEe
Q 024008 107 LPKGRALVPGCGTGYDVVAMASPER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC-----PTELFDLIFD 180 (274)
Q Consensus 107 ~~~~~vLDiG~G~G~~~~~l~~~~~-~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~~~~fD~v~~ 180 (274)
.++.++||+-||+|..++..+.+|+ +|+.||.++.++...++|+...+..+++.++..|..... ...+||+|++
T Consensus 41 ~~g~~vLDLFaGSGalGlEALSRGA~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~~~~l~~~~~~~~~fDiIfl 120 (183)
T PF03602_consen 41 LEGARVLDLFAGSGALGLEALSRGAKSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGDAFKFLLKLAKKGEKFDIIFL 120 (183)
T ss_dssp HTT-EEEETT-TTSHHHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESSHHHHHHHHHHCTS-EEEEEE
T ss_pred cCCCeEEEcCCccCccHHHHHhcCCCeEEEEECCHHHHHHHHHHHHHhCCCcceeeeccCHHHHHHhhcccCCCceEEEE
Confidence 5678999999999999999998887 899999999999999999998877777999999976621 4678999998
Q ss_pred cccccccChhHHHHHHHHHH--hcccCCcEEEEEEccC
Q 024008 181 YTFFCAIEPEMRAAWAQKIK--DFLKPDGELITLMFPI 216 (274)
Q Consensus 181 ~~~~~~~~~~~~~~~l~~l~--~~L~~gG~l~~~~~~~ 216 (274)
-.++..-. ....+++.+. .+|+++|.+++.....
T Consensus 121 DPPY~~~~--~~~~~l~~l~~~~~l~~~~~ii~E~~~~ 156 (183)
T PF03602_consen 121 DPPYAKGL--YYEELLELLAENNLLNEDGLIIIEHSKK 156 (183)
T ss_dssp --STTSCH--HHHHHHHHHHHTTSEEEEEEEEEEEETT
T ss_pred CCCcccch--HHHHHHHHHHHCCCCCCCEEEEEEecCC
Confidence 87776531 1356777776 7899999888876433
No 179
>KOG2940 consensus Predicted methyltransferase [General function prediction only]
Probab=98.96 E-value=5.5e-10 Score=88.86 Aligned_cols=141 Identities=20% Similarity=0.170 Sum_probs=107.2
Q ss_pred CCeEEEEcCCcchhHHHhhCCCC-eEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC-CCCCCCeeEEEecccccc
Q 024008 109 KGRALVPGCGTGYDVVAMASPER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT-WCPTELFDLIFDYTFFCA 186 (274)
Q Consensus 109 ~~~vLDiG~G~G~~~~~l~~~~~-~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~~~~~fD~v~~~~~~~~ 186 (274)
-..++|||||.|.....+...+. +++.+|.|-.+++.++..-. .+ -.+...++|-.. .+.++++|+|+++..+|+
T Consensus 73 fp~a~diGcs~G~v~rhl~~e~vekli~~DtS~~M~~s~~~~qd-p~--i~~~~~v~DEE~Ldf~ens~DLiisSlslHW 149 (325)
T KOG2940|consen 73 FPTAFDIGCSLGAVKRHLRGEGVEKLIMMDTSYDMIKSCRDAQD-PS--IETSYFVGDEEFLDFKENSVDLIISSLSLHW 149 (325)
T ss_pred CcceeecccchhhhhHHHHhcchhheeeeecchHHHHHhhccCC-Cc--eEEEEEecchhcccccccchhhhhhhhhhhh
Confidence 46899999999999999988766 89999999999999876532 21 235666777665 456789999999999998
Q ss_pred cChhHHHHHHHHHHhcccCCcEEEEEEccCCCC--------------CCCCCc----ccCHHHHHHHHhcCCCcEEEEee
Q 024008 187 IEPEMRAAWAQKIKDFLKPDGELITLMFPISDH--------------VGGPPY----KVSVSDYEEVLQPMGFQAISIVD 248 (274)
Q Consensus 187 ~~~~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~--------------~~~~~~----~~~~~~~~~~~~~~Gf~~~~~~~ 248 (274)
.. +++..+.+++..|||+|.++...++..-. .+|..- +....++..++..+||....++.
T Consensus 150 ~N--dLPg~m~~ck~~lKPDg~FiasmlggdTLyELR~slqLAelER~GGiSphiSPf~qvrDiG~LL~rAGF~m~tvDt 227 (325)
T KOG2940|consen 150 TN--DLPGSMIQCKLALKPDGLFIASMLGGDTLYELRCSLQLAELEREGGISPHISPFTQVRDIGNLLTRAGFSMLTVDT 227 (325)
T ss_pred hc--cCchHHHHHHHhcCCCccchhHHhccccHHHHHHHhhHHHHHhccCCCCCcChhhhhhhhhhHHhhcCcccceecc
Confidence 73 55678899999999999999877665311 122111 12578899999999999988877
Q ss_pred cccccC
Q 024008 249 NKLAIG 254 (274)
Q Consensus 249 ~~~~~~ 254 (274)
.+..+.
T Consensus 228 DEi~v~ 233 (325)
T KOG2940|consen 228 DEIVVG 233 (325)
T ss_pred cceeec
Confidence 655443
No 180
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=98.95 E-value=7.8e-09 Score=85.59 Aligned_cols=146 Identities=20% Similarity=0.152 Sum_probs=95.4
Q ss_pred HhcCCCCCCeEEEEcCCcchhHHHhhCCCC-eEEEEeCChHHHHHHHHHhhcCC--------------------------
Q 024008 102 HQSGALPKGRALVPGCGTGYDVVAMASPER-YVVGLEISDIAIKKAEELSSSLP-------------------------- 154 (274)
Q Consensus 102 ~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~-~v~~iD~s~~~~~~a~~~~~~~~-------------------------- 154 (274)
+.....++.++||||||.-.....-+.+.+ +|+..|+.+..++..++-+...+
T Consensus 50 f~~g~~~g~~llDiGsGPtiy~~lsa~~~f~~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~~~v~~lEg~~~~~~e~e~ 129 (256)
T PF01234_consen 50 FSSGGVKGETLLDIGSGPTIYQLLSACEWFEEIVLSDYSEQNREELEKWLRKEGAFDWSPFWKYVCELEGKREKWEEKEE 129 (256)
T ss_dssp HHTSSS-EEEEEEES-TT--GGGTTGGGTEEEEEEEESSHHHHHHHHHHHTT-TS--THHHHHHHHHHTTSSSGHHHHHH
T ss_pred hCccCcCCCEEEEeCCCcHHHhhhhHHHhhcceEEeeccHhhHHHHHHHHCCCCCCCccHHHHHHHhccCCcchhhhHHH
Confidence 333345567999999999555433333333 89999999999887766554432
Q ss_pred -CCcce-EEEEcccCCCCC--C-----CCeeEEEeccccccc--ChhHHHHHHHHHHhcccCCcEEEEEEccCCC--CCC
Q 024008 155 -NAKFV-SFLKADFFTWCP--T-----ELFDLIFDYTFFCAI--EPEMRAAWAQKIKDFLKPDGELITLMFPISD--HVG 221 (274)
Q Consensus 155 -~~~~v-~~~~~d~~~~~~--~-----~~fD~v~~~~~~~~~--~~~~~~~~l~~l~~~L~~gG~l~~~~~~~~~--~~~ 221 (274)
+...| .++.+|+.+..| + .+||+|++..+++.. +.+.....++++.++|||||.+++...-... ..+
T Consensus 130 ~lR~~Vk~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~Lil~~~l~~t~Y~vG 209 (256)
T PF01234_consen 130 KLRRAVKQVVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESACKDLDEYRRALRNISSLLKPGGHLILAGVLGSTYYMVG 209 (256)
T ss_dssp HHHHHEEEEEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEEEEEESS-SEEEET
T ss_pred HHHHhhceEEEeeccCCCCCCccccCccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcEEEEEEEcCceeEEEC
Confidence 00123 477889987322 1 359999999998876 3467889999999999999998886532211 111
Q ss_pred CC---CcccCHHHHHHHHhcCCCcEEEEe
Q 024008 222 GP---PYKVSVSDYEEVLQPMGFQAISIV 247 (274)
Q Consensus 222 ~~---~~~~~~~~~~~~~~~~Gf~~~~~~ 247 (274)
+. ...++.+.+.+.++++||.++..+
T Consensus 210 ~~~F~~l~l~ee~v~~al~~aG~~i~~~~ 238 (256)
T PF01234_consen 210 GHKFPCLPLNEEFVREALEEAGFDIEDLE 238 (256)
T ss_dssp TEEEE---B-HHHHHHHHHHTTEEEEEEE
T ss_pred CEecccccCCHHHHHHHHHHcCCEEEecc
Confidence 11 223689999999999999998888
No 181
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=98.95 E-value=6.9e-09 Score=84.09 Aligned_cols=139 Identities=15% Similarity=0.150 Sum_probs=99.6
Q ss_pred hHhhhcCCCCccCCCccHHHHHHHhcCCCCCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcc
Q 024008 79 EKCWEEGLTPWDIGQPAPIIVHLHQSGALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKF 158 (274)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~ 158 (274)
.+.|......|-. .+...+.+.+... .....|.|+|||-+.++. .....|+.+|+-+ .+
T Consensus 153 H~gfr~QV~kWP~-nPld~ii~~ik~r-~~~~vIaD~GCGEakiA~---~~~~kV~SfDL~a----------------~~ 211 (325)
T KOG3045|consen 153 HAGFRSQVKKWPE-NPLDVIIRKIKRR-PKNIVIADFGCGEAKIAS---SERHKVHSFDLVA----------------VN 211 (325)
T ss_pred HHHHHHHHHhCCC-ChHHHHHHHHHhC-cCceEEEecccchhhhhh---ccccceeeeeeec----------------CC
Confidence 3344444445652 3334444444432 233689999999988775 3445899999844 24
Q ss_pred eEEEEcccCC-CCCCCCeeEEEecccccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHh
Q 024008 159 VSFLKADFFT-WCPTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQ 237 (274)
Q Consensus 159 v~~~~~d~~~-~~~~~~fD~v~~~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (274)
-.++.+|+.+ +.++++.|++++...++. .++..++.++.++|++||.++|.+-.. .+.+...+...+.
T Consensus 212 ~~V~~cDm~~vPl~d~svDvaV~CLSLMg---tn~~df~kEa~RiLk~gG~l~IAEv~S--------Rf~dv~~f~r~l~ 280 (325)
T KOG3045|consen 212 ERVIACDMRNVPLEDESVDVAVFCLSLMG---TNLADFIKEANRILKPGGLLYIAEVKS--------RFSDVKGFVRALT 280 (325)
T ss_pred CceeeccccCCcCccCcccEEEeeHhhhc---ccHHHHHHHHHHHhccCceEEEEehhh--------hcccHHHHHHHHH
Confidence 5788999988 778899999997666554 467789999999999999999988433 2336778999999
Q ss_pred cCCCcEEEEeec
Q 024008 238 PMGFQAISIVDN 249 (274)
Q Consensus 238 ~~Gf~~~~~~~~ 249 (274)
..||.+......
T Consensus 281 ~lGF~~~~~d~~ 292 (325)
T KOG3045|consen 281 KLGFDVKHKDVS 292 (325)
T ss_pred HcCCeeeehhhh
Confidence 999998776653
No 182
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=98.95 E-value=8.5e-09 Score=87.81 Aligned_cols=89 Identities=17% Similarity=0.178 Sum_probs=71.0
Q ss_pred HHHHHhcCC-CCCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCee
Q 024008 98 IVHLHQSGA-LPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFD 176 (274)
Q Consensus 98 ~~~~~~~~~-~~~~~vLDiG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~fD 176 (274)
+..++.... .++.+|||||||+|.++..+++.+.+++++|+++.+++.+++++...+..++++++.+|+.+... ..||
T Consensus 25 ~~~Iv~~~~~~~~~~VLEIG~G~G~LT~~Ll~~~~~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~Dal~~~~-~~~d 103 (294)
T PTZ00338 25 LDKIVEKAAIKPTDTVLEIGPGTGNLTEKLLQLAKKVIAIEIDPRMVAELKKRFQNSPLASKLEVIEGDALKTEF-PYFD 103 (294)
T ss_pred HHHHHHhcCCCCcCEEEEecCchHHHHHHHHHhCCcEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECCHhhhcc-cccC
Confidence 334444333 35579999999999999999998889999999999999999998765544689999999987432 4689
Q ss_pred EEEeccccccc
Q 024008 177 LIFDYTFFCAI 187 (274)
Q Consensus 177 ~v~~~~~~~~~ 187 (274)
.|+++..+...
T Consensus 104 ~VvaNlPY~Is 114 (294)
T PTZ00338 104 VCVANVPYQIS 114 (294)
T ss_pred EEEecCCcccC
Confidence 99988776643
No 183
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=98.94 E-value=1e-09 Score=84.55 Aligned_cols=75 Identities=21% Similarity=0.345 Sum_probs=58.6
Q ss_pred eEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCC---C-CeeEEEeccccc
Q 024008 111 RALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPT---E-LFDLIFDYTFFC 185 (274)
Q Consensus 111 ~vLDiG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~---~-~fD~v~~~~~~~ 185 (274)
.|+|+.||.|.+++.+++...+|+++|+++..++.|+.|+...|+.++++|+.+|+.+.... . .||+|+++.++.
T Consensus 2 ~vlD~fcG~GGNtIqFA~~~~~Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~~~~~~~~~~~D~vFlSPPWG 80 (163)
T PF09445_consen 2 TVLDAFCGVGGNTIQFARTFDRVIAIDIDPERLECAKHNAEVYGVADNIDFICGDFFELLKRLKSNKIFDVVFLSPPWG 80 (163)
T ss_dssp EEEETT-TTSHHHHHHHHTT-EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHHGGGB------SEEEE---BS
T ss_pred EEEEeccCcCHHHHHHHHhCCeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCHHHHHhhccccccccEEEECCCCC
Confidence 69999999999999999998899999999999999999999999889999999999884322 2 289999987765
No 184
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=98.94 E-value=2e-08 Score=80.86 Aligned_cols=121 Identities=15% Similarity=0.055 Sum_probs=90.6
Q ss_pred EEEEcCCcchhHHHhhCCCC--eEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCC-CeeEEEecccccccC
Q 024008 112 ALVPGCGTGYDVVAMASPER--YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTE-LFDLIFDYTFFCAIE 188 (274)
Q Consensus 112 vLDiG~G~G~~~~~l~~~~~--~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~-~fD~v~~~~~~~~~~ 188 (274)
|.||||-.|++..+|.+.|. +++++|+++..++.|++++...++.+++++..+|-.+....+ ..|.|+..++ .
T Consensus 1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdGL~~l~~~e~~d~ivIAGM----G 76 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDGLEVLKPGEDVDTIVIAGM----G 76 (205)
T ss_dssp EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SGGGG--GGG---EEEEEEE-----
T ss_pred CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCcccccCCCCCCCEEEEecC----C
Confidence 68999999999999999876 899999999999999999999999999999999988754444 4899985544 3
Q ss_pred hhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcEEEEee
Q 024008 189 PEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAISIVD 248 (274)
Q Consensus 189 ~~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gf~~~~~~~ 248 (274)
......+++.....++....+++.-. .....+++++.++||.+++-.-
T Consensus 77 G~lI~~ILe~~~~~~~~~~~lILqP~------------~~~~~LR~~L~~~gf~I~~E~l 124 (205)
T PF04816_consen 77 GELIIEILEAGPEKLSSAKRLILQPN------------THAYELRRWLYENGFEIIDEDL 124 (205)
T ss_dssp HHHHHHHHHHTGGGGTT--EEEEEES------------S-HHHHHHHHHHTTEEEEEEEE
T ss_pred HHHHHHHHHhhHHHhccCCeEEEeCC------------CChHHHHHHHHHCCCEEEEeEE
Confidence 34566778888777776666666432 1578999999999999887554
No 185
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=98.93 E-value=5.2e-09 Score=83.79 Aligned_cols=99 Identities=15% Similarity=0.116 Sum_probs=74.5
Q ss_pred CCCCCeEEEEcCCcchhHHHhhC--CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCeeEEEeccc
Q 024008 106 ALPKGRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTF 183 (274)
Q Consensus 106 ~~~~~~vLDiG~G~G~~~~~l~~--~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~~ 183 (274)
..++..|+|+.||.|.+++.+++ .+..|+++|++|.+++.+++++..+++.+++..+.+|.....+...||-|++..+
T Consensus 99 v~~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D~~~~~~~~~~drvim~lp 178 (200)
T PF02475_consen 99 VKPGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLNKVENRIEVINGDAREFLPEGKFDRVIMNLP 178 (200)
T ss_dssp --TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHTT-TTTEEEEES-GGG---TT-EEEEEE--T
T ss_pred CCcceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHHcCCCCeEEEEcCCHHHhcCccccCEEEECCh
Confidence 45678999999999999999998 6779999999999999999999999998889999999988666789999997654
Q ss_pred ccccChhHHHHHHHHHHhcccCCcEEE
Q 024008 184 FCAIEPEMRAAWAQKIKDFLKPDGELI 210 (274)
Q Consensus 184 ~~~~~~~~~~~~l~~l~~~L~~gG~l~ 210 (274)
-.. ..++..+..++++||.+-
T Consensus 179 ~~~------~~fl~~~~~~~~~~g~ih 199 (200)
T PF02475_consen 179 ESS------LEFLDAALSLLKEGGIIH 199 (200)
T ss_dssp SSG------GGGHHHHHHHEEEEEEEE
T ss_pred HHH------HHHHHHHHHHhcCCcEEE
Confidence 332 246788999999998763
No 186
>PRK04148 hypothetical protein; Provisional
Probab=98.93 E-value=1.9e-08 Score=74.74 Aligned_cols=94 Identities=16% Similarity=0.179 Sum_probs=69.7
Q ss_pred CCCeEEEEcCCcch-hHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCC--CCCeeEEEecccc
Q 024008 108 PKGRALVPGCGTGY-DVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP--TELFDLIFDYTFF 184 (274)
Q Consensus 108 ~~~~vLDiG~G~G~-~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~--~~~fD~v~~~~~~ 184 (274)
++.+|||||||.|. .+..|++.|..|+++|+++.+++.++++. ++++.+|++++.. ...+|+|++...
T Consensus 16 ~~~kileIG~GfG~~vA~~L~~~G~~ViaIDi~~~aV~~a~~~~--------~~~v~dDlf~p~~~~y~~a~liysirp- 86 (134)
T PRK04148 16 KNKKIVELGIGFYFKVAKKLKESGFDVIVIDINEKAVEKAKKLG--------LNAFVDDLFNPNLEIYKNAKLIYSIRP- 86 (134)
T ss_pred cCCEEEEEEecCCHHHHHHHHHCCCEEEEEECCHHHHHHHHHhC--------CeEEECcCCCCCHHHHhcCCEEEEeCC-
Confidence 45789999999996 88888889999999999999999887774 7899999998543 468999997543
Q ss_pred cccChhHHHHHHHHHHhcccCCcEEEEEEccC
Q 024008 185 CAIEPEMRAAWAQKIKDFLKPDGELITLMFPI 216 (274)
Q Consensus 185 ~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~~~ 216 (274)
+.++...+-++.+.+ |.-+++...+.
T Consensus 87 ----p~el~~~~~~la~~~--~~~~~i~~l~~ 112 (134)
T PRK04148 87 ----PRDLQPFILELAKKI--NVPLIIKPLSG 112 (134)
T ss_pred ----CHHHHHHHHHHHHHc--CCCEEEEcCCC
Confidence 234444445555543 44566555443
No 187
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=98.93 E-value=1.5e-08 Score=88.86 Aligned_cols=137 Identities=16% Similarity=0.066 Sum_probs=94.7
Q ss_pred CCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCC----------------
Q 024008 109 KGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPT---------------- 172 (274)
Q Consensus 109 ~~~vLDiG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~---------------- 172 (274)
+.+|||++||+|.++..+++...+|+|+|+++++++.|++++..++.. +++|+.+|+.+....
T Consensus 198 ~~~vlDl~~G~G~~sl~la~~~~~v~~vE~~~~av~~a~~n~~~~~~~-~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~ 276 (353)
T TIGR02143 198 KGDLLELYCGNGNFSLALAQNFRRVLATEIAKPSVNAAQYNIAANNID-NVQIIRMSAEEFTQAMNGVREFRRLKGIDLK 276 (353)
T ss_pred CCcEEEEeccccHHHHHHHHhCCEEEEEECCHHHHHHHHHHHHHcCCC-cEEEEEcCHHHHHHHHhhccccccccccccc
Confidence 357999999999999999886679999999999999999999888763 699999999762211
Q ss_pred -CCeeEEEecccccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccC-HHHHHHHHhcCCCcEEEEeecc
Q 024008 173 -ELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVS-VSDYEEVLQPMGFQAISIVDNK 250 (274)
Q Consensus 173 -~~fD~v~~~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~Gf~~~~~~~~~ 250 (274)
..||+|+....=..+. ..+++.+.+ |++++++.+.+. + ..++. .|.+ ||++..+...+
T Consensus 277 ~~~~d~v~lDPPR~G~~----~~~l~~l~~---~~~ivYvsC~p~-----------tlaRDl~-~L~~-~Y~l~~v~~~D 336 (353)
T TIGR02143 277 SYNCSTIFVDPPRAGLD----PDTCKLVQA---YERILYISCNPE-----------TLKANLE-QLSE-THRVERFALFD 336 (353)
T ss_pred cCCCCEEEECCCCCCCc----HHHHHHHHc---CCcEEEEEcCHH-----------HHHHHHH-HHhc-CcEEEEEEEcc
Confidence 2379999655522222 334444443 788888887332 2 23443 3443 59999888755
Q ss_pred cccCCccchhHHHHhhh
Q 024008 251 LAIGPRKGREKLGRWKR 267 (274)
Q Consensus 251 ~~~~~~~~~~~~~~~~~ 267 (274)
. ++.-+..|++.++.|
T Consensus 337 m-FP~T~HvE~v~lL~r 352 (353)
T TIGR02143 337 Q-FPYTHHMECGVLLER 352 (353)
T ss_pred c-CCCCCcEEEEEEEEe
Confidence 3 222335666655543
No 188
>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.92 E-value=5e-08 Score=78.12 Aligned_cols=110 Identities=22% Similarity=0.268 Sum_probs=89.6
Q ss_pred HHHHHHhcCCCCCCeEEEEcCCcchhHHHhhC---CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCC----
Q 024008 97 IIVHLHQSGALPKGRALVPGCGTGYDVVAMAS---PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW---- 169 (274)
Q Consensus 97 ~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~---~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~---- 169 (274)
.+..+++ ...++++||+|.=||+.+...+. .+.+|+++|++++..+.+.+..+.+++.+++++++++..+.
T Consensus 64 fl~~li~--~~~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~a~esLd~l 141 (237)
T KOG1663|consen 64 FLQMLIR--LLNAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGPALESLDEL 141 (237)
T ss_pred HHHHHHH--HhCCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccccceeeeeecchhhhHHHH
Confidence 3444444 34578999999999999887776 57799999999999999999999999999999999998862
Q ss_pred ---CCCCCeeEEEecccccccChhHHHHHHHHHHhcccCCcEEEEEE
Q 024008 170 ---CPTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLM 213 (274)
Q Consensus 170 ---~~~~~fD~v~~~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~ 213 (274)
...+.||++|. .+ +.+....+.+++.+++++||+|++-.
T Consensus 142 ~~~~~~~tfDfaFv----Da-dK~nY~~y~e~~l~Llr~GGvi~~DN 183 (237)
T KOG1663|consen 142 LADGESGTFDFAFV----DA-DKDNYSNYYERLLRLLRVGGVIVVDN 183 (237)
T ss_pred HhcCCCCceeEEEE----cc-chHHHHHHHHHHHhhcccccEEEEec
Confidence 23568999982 32 34555688999999999999998744
No 189
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=98.90 E-value=1.6e-08 Score=80.01 Aligned_cols=128 Identities=19% Similarity=0.268 Sum_probs=97.5
Q ss_pred CeEEEEcCCcchhHHHhh--CCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCeeEEEeccccccc
Q 024008 110 GRALVPGCGTGYDVVAMA--SPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFCAI 187 (274)
Q Consensus 110 ~~vLDiG~G~G~~~~~l~--~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~~~~~~ 187 (274)
.+++|+|+|.|.-++.++ .+..+++.+|....-+...+......+++ |++++.+.+.+.....+||+|++..+-.
T Consensus 50 ~~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L~L~-nv~v~~~R~E~~~~~~~fd~v~aRAv~~-- 126 (184)
T PF02527_consen 50 KKVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVRELGLS-NVEVINGRAEEPEYRESFDVVTARAVAP-- 126 (184)
T ss_dssp SEEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHHT-S-SEEEEES-HHHTTTTT-EEEEEEESSSS--
T ss_pred ceEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHhCCC-CEEEEEeeecccccCCCccEEEeehhcC--
Confidence 389999999998887654 48889999999999999999888888774 6999999998755668999999988743
Q ss_pred ChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcEEEEeecccc
Q 024008 188 EPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAISIVDNKLA 252 (274)
Q Consensus 188 ~~~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gf~~~~~~~~~~~ 252 (274)
...+++-+...+++||.++..- |+...-..++....++..|.+...+.....+
T Consensus 127 ----l~~l~~~~~~~l~~~G~~l~~K--------G~~~~~El~~~~~~~~~~~~~~~~v~~~~~~ 179 (184)
T PF02527_consen 127 ----LDKLLELARPLLKPGGRLLAYK--------GPDAEEELEEAKKAWKKLGLKVLSVPEFELP 179 (184)
T ss_dssp ----HHHHHHHHGGGEEEEEEEEEEE--------SS--HHHHHTHHHHHHCCCEEEEEEEEEE-T
T ss_pred ----HHHHHHHHHHhcCCCCEEEEEc--------CCChHHHHHHHHhHHHHhCCEEeeeccccCC
Confidence 2467788999999999999886 3222224556677788888888888776543
No 190
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=98.89 E-value=1.7e-08 Score=82.40 Aligned_cols=102 Identities=25% Similarity=0.199 Sum_probs=83.5
Q ss_pred CeEEEEcCCcchhHHHhhC--CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC----CCCCCCeeEEEeccc
Q 024008 110 GRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT----WCPTELFDLIFDYTF 183 (274)
Q Consensus 110 ~~vLDiG~G~G~~~~~l~~--~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~----~~~~~~fD~v~~~~~ 183 (274)
..+||||||.|..+..+|+ +...++|||+....+..|...+...++. |+.+++.|+.. ..++++.|-|+.+..
T Consensus 50 pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~l~-Nlri~~~DA~~~l~~~~~~~sl~~I~i~FP 128 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELGLK-NLRLLCGDAVEVLDYLIPDGSLDKIYINFP 128 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcCCC-cEEEEcCCHHHHHHhcCCCCCeeEEEEECC
Confidence 5899999999999999988 6779999999999999999999888764 89999999987 445569999997644
Q ss_pred ccccCh-hH------HHHHHHHHHhcccCCcEEEEEE
Q 024008 184 FCAIEP-EM------RAAWAQKIKDFLKPDGELITLM 213 (274)
Q Consensus 184 ~~~~~~-~~------~~~~l~~l~~~L~~gG~l~~~~ 213 (274)
=-+ +. .. ...+++.+.+.|+|||.|.+.+
T Consensus 129 DPW-pKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~aT 164 (227)
T COG0220 129 DPW-PKKRHHKRRLTQPEFLKLYARKLKPGGVLHFAT 164 (227)
T ss_pred CCC-CCccccccccCCHHHHHHHHHHccCCCEEEEEe
Confidence 221 11 01 1578999999999999998865
No 191
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=98.89 E-value=4e-08 Score=80.43 Aligned_cols=137 Identities=14% Similarity=0.092 Sum_probs=85.0
Q ss_pred HHHHHhcC--CCCCCeEEEEcCCcchhHHHhhCCCC-eEEEEeCChHHHHH-HHHHhhcCCCCcce-EEEEcccCC----
Q 024008 98 IVHLHQSG--ALPKGRALVPGCGTGYDVVAMASPER-YVVGLEISDIAIKK-AEELSSSLPNAKFV-SFLKADFFT---- 168 (274)
Q Consensus 98 ~~~~~~~~--~~~~~~vLDiG~G~G~~~~~l~~~~~-~v~~iD~s~~~~~~-a~~~~~~~~~~~~v-~~~~~d~~~---- 168 (274)
+..++... ..++.+|||+|||+|.++..+++.|+ +|+++|+++.++.. .+++. ++ .+...|+..
T Consensus 63 L~~~l~~~~~~~~~~~vlDiG~gtG~~t~~l~~~ga~~v~avD~~~~~l~~~l~~~~-------~v~~~~~~ni~~~~~~ 135 (228)
T TIGR00478 63 LKEALEEFNIDVKNKIVLDVGSSTGGFTDCALQKGAKEVYGVDVGYNQLAEKLRQDE-------RVKVLERTNIRYVTPA 135 (228)
T ss_pred HHHHHHhcCCCCCCCEEEEcccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHhcCC-------CeeEeecCCcccCCHh
Confidence 44444443 24567999999999999999999866 89999999987765 33321 22 233334332
Q ss_pred -CC-CCCCeeEEEecccccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCC-----C-CC-----CcccCHHHHHHH
Q 024008 169 -WC-PTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHV-----G-GP-----PYKVSVSDYEEV 235 (274)
Q Consensus 169 -~~-~~~~fD~v~~~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~~-----~-~~-----~~~~~~~~~~~~ 235 (274)
.. .-..+|+++++. ..++..+.++|++ |.+++..-+..+.. . |. .+....+++...
T Consensus 136 ~~~~d~~~~DvsfiS~----------~~~l~~i~~~l~~-~~~~~L~KPqFE~~~~~~~~~giv~~~~~~~~~~~~~~~~ 204 (228)
T TIGR00478 136 DIFPDFATFDVSFISL----------ISILPELDLLLNP-NDLTLLFKPQFEAGREKKNKKGVVRDKEAIALALHKVIDK 204 (228)
T ss_pred HcCCCceeeeEEEeeh----------HhHHHHHHHHhCc-CeEEEEcChHhhhcHhhcCcCCeecCHHHHHHHHHHHHHH
Confidence 11 112566666432 2357789999999 87766542221110 0 10 011245677788
Q ss_pred HhcCCCcEEEEeecccc
Q 024008 236 LQPMGFQAISIVDNKLA 252 (274)
Q Consensus 236 ~~~~Gf~~~~~~~~~~~ 252 (274)
+.+.||.+..+...+..
T Consensus 205 ~~~~~~~~~~~~~s~i~ 221 (228)
T TIGR00478 205 GESPDFQEKKIIFSLTK 221 (228)
T ss_pred HHcCCCeEeeEEECCCC
Confidence 88899999888875543
No 192
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=98.88 E-value=1.7e-08 Score=84.84 Aligned_cols=85 Identities=12% Similarity=0.065 Sum_probs=68.1
Q ss_pred HHHHHhcCC-CCCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCee
Q 024008 98 IVHLHQSGA-LPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFD 176 (274)
Q Consensus 98 ~~~~~~~~~-~~~~~vLDiG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~fD 176 (274)
+..+++... .++.+|||+|||+|..+..+++.+.+++++|+++.+++.++++.... ++++++.+|+.+... ..||
T Consensus 18 ~~~iv~~~~~~~~~~VLEIG~G~G~lt~~L~~~~~~v~~vEid~~~~~~l~~~~~~~---~~v~ii~~D~~~~~~-~~~d 93 (258)
T PRK14896 18 VDRIVEYAEDTDGDPVLEIGPGKGALTDELAKRAKKVYAIELDPRLAEFLRDDEIAA---GNVEIIEGDALKVDL-PEFN 93 (258)
T ss_pred HHHHHHhcCCCCcCeEEEEeCccCHHHHHHHHhCCEEEEEECCHHHHHHHHHHhccC---CCEEEEEeccccCCc-hhce
Confidence 344444333 35679999999999999999998889999999999999999887542 579999999987432 3489
Q ss_pred EEEecccccc
Q 024008 177 LIFDYTFFCA 186 (274)
Q Consensus 177 ~v~~~~~~~~ 186 (274)
.|+++..++.
T Consensus 94 ~Vv~NlPy~i 103 (258)
T PRK14896 94 KVVSNLPYQI 103 (258)
T ss_pred EEEEcCCccc
Confidence 9999887663
No 193
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=98.88 E-value=4.6e-08 Score=82.78 Aligned_cols=85 Identities=15% Similarity=0.101 Sum_probs=66.0
Q ss_pred HHHHHHhcCC-CCCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCC-
Q 024008 97 IIVHLHQSGA-LPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTEL- 174 (274)
Q Consensus 97 ~~~~~~~~~~-~~~~~vLDiG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~- 174 (274)
.+..+++... .++.+|||+|||+|..+..+++.+.+++++|+++.+++.++++... ++++++.+|+.+...+.-
T Consensus 30 i~~~i~~~l~~~~~~~VLEiG~G~G~lt~~L~~~~~~v~avE~d~~~~~~~~~~~~~----~~v~~i~~D~~~~~~~~~~ 105 (272)
T PRK00274 30 ILDKIVDAAGPQPGDNVLEIGPGLGALTEPLLERAAKVTAVEIDRDLAPILAETFAE----DNLTIIEGDALKVDLSELQ 105 (272)
T ss_pred HHHHHHHhcCCCCcCeEEEeCCCccHHHHHHHHhCCcEEEEECCHHHHHHHHHhhcc----CceEEEEChhhcCCHHHcC
Confidence 3444554443 3557999999999999999999777999999999999999987643 479999999987433221
Q ss_pred eeEEEeccccc
Q 024008 175 FDLIFDYTFFC 185 (274)
Q Consensus 175 fD~v~~~~~~~ 185 (274)
++.|+++..+.
T Consensus 106 ~~~vv~NlPY~ 116 (272)
T PRK00274 106 PLKVVANLPYN 116 (272)
T ss_pred cceEEEeCCcc
Confidence 58888887654
No 194
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.86 E-value=1.4e-08 Score=79.89 Aligned_cols=111 Identities=19% Similarity=0.184 Sum_probs=84.6
Q ss_pred cHHHHHHHhcCCCCCCeEEEEcCCcchhHHHhhC----CCCeEEEEeCChHHHHHHHHHhhcCC---------CCcceEE
Q 024008 95 APIIVHLHQSGALPKGRALVPGCGTGYDVVAMAS----PERYVVGLEISDIAIKKAEELSSSLP---------NAKFVSF 161 (274)
Q Consensus 95 ~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~----~~~~v~~iD~s~~~~~~a~~~~~~~~---------~~~~v~~ 161 (274)
+..+.+++.....++.+.||+|+|+|+++.-++. .|...+|||.-++.++.+++++...- ...++.+
T Consensus 69 ha~~le~L~~~L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~i 148 (237)
T KOG1661|consen 69 HATALEYLDDHLQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSI 148 (237)
T ss_pred HHHHHHHHHHhhccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEE
Confidence 3334445554456788999999999999876664 55667999999999999999986643 1356889
Q ss_pred EEcccCC-CCCCCCeeEEEecccccccChhHHHHHHHHHHhcccCCcEEEEEE
Q 024008 162 LKADFFT-WCPTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLM 213 (274)
Q Consensus 162 ~~~d~~~-~~~~~~fD~v~~~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~ 213 (274)
+.+|... .....+||.|.+-..... .-+++.+.|++||.+++..
T Consensus 149 vvGDgr~g~~e~a~YDaIhvGAaa~~--------~pq~l~dqL~~gGrllip~ 193 (237)
T KOG1661|consen 149 VVGDGRKGYAEQAPYDAIHVGAAASE--------LPQELLDQLKPGGRLLIPV 193 (237)
T ss_pred EeCCccccCCccCCcceEEEccCccc--------cHHHHHHhhccCCeEEEee
Confidence 9999988 556689999997644332 3367888899999999865
No 195
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=98.85 E-value=6e-08 Score=81.31 Aligned_cols=87 Identities=15% Similarity=0.127 Sum_probs=66.8
Q ss_pred cHHHHHHHhcCC-CCCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCC
Q 024008 95 APIIVHLHQSGA-LPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTE 173 (274)
Q Consensus 95 ~~~~~~~~~~~~-~~~~~vLDiG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~ 173 (274)
...+..+++... .++.+|||+|||+|..+..+++.+..++++|+++.+++.++++.... .+++++.+|+......
T Consensus 15 ~~i~~~i~~~~~~~~~~~VLEiG~G~G~lt~~L~~~~~~v~~iE~d~~~~~~l~~~~~~~---~~v~v~~~D~~~~~~~- 90 (253)
T TIGR00755 15 ESVIQKIVEAANVLEGDVVLEIGPGLGALTEPLLKRAKKVTAIEIDPRLAEILRKLLSLY---ERLEVIEGDALKVDLP- 90 (253)
T ss_pred HHHHHHHHHhcCCCCcCEEEEeCCCCCHHHHHHHHhCCcEEEEECCHHHHHHHHHHhCcC---CcEEEEECchhcCChh-
Confidence 334455555443 35579999999999999999998888999999999999999887542 5799999999874432
Q ss_pred Cee---EEEeccccc
Q 024008 174 LFD---LIFDYTFFC 185 (274)
Q Consensus 174 ~fD---~v~~~~~~~ 185 (274)
.+| +|+++..++
T Consensus 91 ~~d~~~~vvsNlPy~ 105 (253)
T TIGR00755 91 DFPKQLKVVSNLPYN 105 (253)
T ss_pred HcCCcceEEEcCChh
Confidence 466 777766544
No 196
>PLN02823 spermine synthase
Probab=98.84 E-value=3.7e-08 Score=85.23 Aligned_cols=105 Identities=16% Similarity=0.127 Sum_probs=79.1
Q ss_pred CCCeEEEEcCCcchhHHHhhC-C-CCeEEEEeCChHHHHHHHHHhhcCC---CCcceEEEEcccCCC--CCCCCeeEEEe
Q 024008 108 PKGRALVPGCGTGYDVVAMAS-P-ERYVVGLEISDIAIKKAEELSSSLP---NAKFVSFLKADFFTW--CPTELFDLIFD 180 (274)
Q Consensus 108 ~~~~vLDiG~G~G~~~~~l~~-~-~~~v~~iD~s~~~~~~a~~~~~~~~---~~~~v~~~~~d~~~~--~~~~~fD~v~~ 180 (274)
.+.+||.+|+|.|..+..+++ . ..+++++|+++++++.|++...... ..++++++.+|.... ...++||+|+.
T Consensus 103 ~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~~~~yDvIi~ 182 (336)
T PLN02823 103 NPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKRDEKFDVIIG 182 (336)
T ss_pred CCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhCCCCccEEEe
Confidence 457999999999999998877 3 3589999999999999999886432 247899999999883 23468999997
Q ss_pred ccccccc---Chh--HHHHHHH-HHHhcccCCcEEEEEE
Q 024008 181 YTFFCAI---EPE--MRAAWAQ-KIKDFLKPDGELITLM 213 (274)
Q Consensus 181 ~~~~~~~---~~~--~~~~~l~-~l~~~L~~gG~l~~~~ 213 (274)
-.. ... +.. ....+++ .+.+.|+|||++++..
T Consensus 183 D~~-dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q~ 220 (336)
T PLN02823 183 DLA-DPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVTQA 220 (336)
T ss_pred cCC-CccccCcchhhccHHHHHHHHHHhcCCCcEEEEec
Confidence 521 111 000 1245677 8999999999987643
No 197
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=98.83 E-value=9.2e-08 Score=85.42 Aligned_cols=126 Identities=20% Similarity=0.216 Sum_probs=98.3
Q ss_pred CCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCC----CCCeeEEEeccc
Q 024008 108 PKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP----TELFDLIFDYTF 183 (274)
Q Consensus 108 ~~~~vLDiG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~----~~~fD~v~~~~~ 183 (274)
++.+|||+=||.|.+++.+++...+|+|+|+++++++.|++++..++..+ ++|+.+|..+..+ ...+|.|+....
T Consensus 293 ~~~~vlDlYCGvG~f~l~lA~~~~~V~gvEi~~~aV~~A~~NA~~n~i~N-~~f~~~~ae~~~~~~~~~~~~d~VvvDPP 371 (432)
T COG2265 293 GGERVLDLYCGVGTFGLPLAKRVKKVHGVEISPEAVEAAQENAAANGIDN-VEFIAGDAEEFTPAWWEGYKPDVVVVDPP 371 (432)
T ss_pred CCCEEEEeccCCChhhhhhcccCCEEEEEecCHHHHHHHHHHHHHcCCCc-EEEEeCCHHHHhhhccccCCCCEEEECCC
Confidence 44799999999999999999999999999999999999999999998865 9999999988332 247899995444
Q ss_pred ccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcEEEEeecc
Q 024008 184 FCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAISIVDNK 250 (274)
Q Consensus 184 ~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gf~~~~~~~~~ 250 (274)
=..++ ..+++.+.+ ++|-.++++++.+. |...-.+.+.+.||.+.++...+
T Consensus 372 R~G~~----~~~lk~l~~-~~p~~IvYVSCNP~-----------TlaRDl~~L~~~gy~i~~v~~~D 422 (432)
T COG2265 372 RAGAD----REVLKQLAK-LKPKRIVYVSCNPA-----------TLARDLAILASTGYEIERVQPFD 422 (432)
T ss_pred CCCCC----HHHHHHHHh-cCCCcEEEEeCCHH-----------HHHHHHHHHHhCCeEEEEEEEec
Confidence 33332 234444444 77888899988433 56666678888899877776643
No 198
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=98.82 E-value=6.9e-08 Score=82.94 Aligned_cols=132 Identities=15% Similarity=0.045 Sum_probs=105.7
Q ss_pred CCCCeEEEEcCCcchhHHHhhCCCCe-EEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCC-CCeeEEEecccc
Q 024008 107 LPKGRALVPGCGTGYDVVAMASPERY-VVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPT-ELFDLIFDYTFF 184 (274)
Q Consensus 107 ~~~~~vLDiG~G~G~~~~~l~~~~~~-v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~-~~fD~v~~~~~~ 184 (274)
.++.+|||.-+|.|.+++.+++.+.. |+++|+||.+++..++|+..+++.+.+..+.+|.....+. +.+|-|+...+-
T Consensus 187 ~~GE~V~DmFAGVGpfsi~~Ak~g~~~V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD~rev~~~~~~aDrIim~~p~ 266 (341)
T COG2520 187 KEGETVLDMFAGVGPFSIPIAKKGRPKVYAIDINPDAVEYLKENIRLNKVEGRVEPILGDAREVAPELGVADRIIMGLPK 266 (341)
T ss_pred cCCCEEEEccCCcccchhhhhhcCCceEEEEecCHHHHHHHHHHHHhcCccceeeEEeccHHHhhhccccCCEEEeCCCC
Confidence 44789999999999999999997764 9999999999999999999999988899999999986555 889999976543
Q ss_pred cccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcEEEEee
Q 024008 185 CAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAISIVD 248 (274)
Q Consensus 185 ~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gf~~~~~~~ 248 (274)
. ...++....+++++||.+-...+.+.+.... ....++.......|+++.....
T Consensus 267 ~------a~~fl~~A~~~~k~~g~iHyy~~~~e~~~~~----~~~~~i~~~~~~~~~~~~v~~~ 320 (341)
T COG2520 267 S------AHEFLPLALELLKDGGIIHYYEFVPEDDIEE----RPEKRIKSAARKGGYKVEVLKV 320 (341)
T ss_pred c------chhhHHHHHHHhhcCcEEEEEeccchhhccc----chHHHHHHHHhhccCcceEEEE
Confidence 2 2456788889999999999888766543221 2467788888888875544443
No 199
>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]
Probab=98.80 E-value=8.7e-08 Score=78.39 Aligned_cols=129 Identities=21% Similarity=0.179 Sum_probs=98.9
Q ss_pred CCCCCeEEEEcCCcchhHHHhhC---CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC--CC-CCCCeeEEE
Q 024008 106 ALPKGRALVPGCGTGYDVVAMAS---PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT--WC-PTELFDLIF 179 (274)
Q Consensus 106 ~~~~~~vLDiG~G~G~~~~~l~~---~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~--~~-~~~~fD~v~ 179 (274)
..|+.+|+|-|+|+|.++.++++ +-.+++.+|+.....+.|.+..+..++.+++++..-|+.. +. ....+|.|+
T Consensus 103 i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi~~~vt~~hrDVc~~GF~~ks~~aDaVF 182 (314)
T KOG2915|consen 103 IRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGIGDNVTVTHRDVCGSGFLIKSLKADAVF 182 (314)
T ss_pred CCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCCCcceEEEEeecccCCccccccccceEE
Confidence 46778999999999999999998 3459999999999999999999999999999999999987 22 256899998
Q ss_pred ecccccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcEEEEeecc
Q 024008 180 DYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAISIVDNK 250 (274)
Q Consensus 180 ~~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gf~~~~~~~~~ 250 (274)
. +-+..+..+..+.+.|+.+|.- ++.|++. .--.+.-.+.+.+.||..+...+..
T Consensus 183 L-------DlPaPw~AiPha~~~lk~~g~r-~csFSPC--------IEQvqrtce~l~~~gf~~i~~vEv~ 237 (314)
T KOG2915|consen 183 L-------DLPAPWEAIPHAAKILKDEGGR-LCSFSPC--------IEQVQRTCEALRSLGFIEIETVEVL 237 (314)
T ss_pred E-------cCCChhhhhhhhHHHhhhcCce-EEeccHH--------HHHHHHHHHHHHhCCCceEEEEEee
Confidence 3 3334466778888899988742 2333332 1134566778888899877666543
No 200
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=98.77 E-value=7.5e-08 Score=81.46 Aligned_cols=136 Identities=15% Similarity=0.158 Sum_probs=92.9
Q ss_pred CCCCeEEEEcCCcchhHHHhhC--C-CCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCeeEEEeccc
Q 024008 107 LPKGRALVPGCGTGYDVVAMAS--P-ERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTF 183 (274)
Q Consensus 107 ~~~~~vLDiG~G~G~~~~~l~~--~-~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~~ 183 (274)
..+.+|||+|||+|..+..+.. + -.+++++|.|+.+++.++....................+..+..+.|+|++.++
T Consensus 32 f~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DLvi~s~~ 111 (274)
T PF09243_consen 32 FRPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAGPNNRNAEWRRVLYRDFLPFPPDDLVIASYV 111 (274)
T ss_pred CCCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhcccccccchhhhhhhcccccCCCCcEEEEehh
Confidence 4568999999999987765554 2 348999999999999999887654321111111111111222234499999999
Q ss_pred ccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcEEEEeecc
Q 024008 184 FCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAISIVDNK 250 (274)
Q Consensus 184 ~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gf~~~~~~~~~ 250 (274)
+..++...+..+++.+.+.+++ .+++++.+.... +-...+..+.+.+.|+.++-=....
T Consensus 112 L~EL~~~~r~~lv~~LW~~~~~--~LVlVEpGt~~G------f~~i~~aR~~l~~~~~~v~APCph~ 170 (274)
T PF09243_consen 112 LNELPSAARAELVRSLWNKTAP--VLVLVEPGTPAG------FRRIAEARDQLLEKGAHVVAPCPHD 170 (274)
T ss_pred hhcCCchHHHHHHHHHHHhccC--cEEEEcCCChHH------HHHHHHHHHHHhhCCCceECCCccC
Confidence 9999878888999999888876 888887554321 1146677777777787776555443
No 201
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=98.76 E-value=1.9e-07 Score=73.27 Aligned_cols=120 Identities=21% Similarity=0.099 Sum_probs=89.8
Q ss_pred cHHHHHHHhcCC---CCCCeEEEEcCCcchhHHHhhCCCC-eEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCC-
Q 024008 95 APIIVHLHQSGA---LPKGRALVPGCGTGYDVVAMASPER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW- 169 (274)
Q Consensus 95 ~~~~~~~~~~~~---~~~~~vLDiG~G~G~~~~~l~~~~~-~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~- 169 (274)
...-+.++..+. ..+.++||+-+|+|.++...+.+|+ .++.||.+..++...++|+...+...++.++..|....
T Consensus 27 drVREalFNil~~~~i~g~~~LDlFAGSGaLGlEAlSRGA~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da~~~L 106 (187)
T COG0742 27 DRVREALFNILAPDEIEGARVLDLFAGSGALGLEALSRGAARVVFVEKDRKAVKILKENLKALGLEGEARVLRNDALRAL 106 (187)
T ss_pred hHHHHHHHHhccccccCCCEEEEecCCccHhHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCccceEEEeecHHHHH
Confidence 444445555542 5678999999999999999999887 89999999999999999999887778899999998852
Q ss_pred -CCC--CCeeEEEecccccc-cChhHHHHHHHHHHhcccCCcEEEEEEc
Q 024008 170 -CPT--ELFDLIFDYTFFCA-IEPEMRAAWAQKIKDFLKPDGELITLMF 214 (274)
Q Consensus 170 -~~~--~~fD~v~~~~~~~~-~~~~~~~~~l~~l~~~L~~gG~l~~~~~ 214 (274)
... +.||+|+.-..++. +-+.......-.-..+|+|+|.+++...
T Consensus 107 ~~~~~~~~FDlVflDPPy~~~l~~~~~~~~~~~~~~~L~~~~~iv~E~~ 155 (187)
T COG0742 107 KQLGTREPFDLVFLDPPYAKGLLDKELALLLLEENGWLKPGALIVVEHD 155 (187)
T ss_pred HhcCCCCcccEEEeCCCCccchhhHHHHHHHHHhcCCcCCCcEEEEEeC
Confidence 122 35999998888772 1111222222224578999999988663
No 202
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=98.76 E-value=4.8e-07 Score=77.70 Aligned_cols=104 Identities=12% Similarity=-0.011 Sum_probs=79.2
Q ss_pred CCCeEEEEcCCcchhHHHhhC------CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEE--EEcccCCC---CC----C
Q 024008 108 PKGRALVPGCGTGYDVVAMAS------PERYVVGLEISDIAIKKAEELSSSLPNAKFVSF--LKADFFTW---CP----T 172 (274)
Q Consensus 108 ~~~~vLDiG~G~G~~~~~l~~------~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~--~~~d~~~~---~~----~ 172 (274)
++..|+|+|||.|.-+..|.+ ....++++|+|.++++.+..++..... +.+++ +.+|+.+. .+ .
T Consensus 76 ~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~-p~l~v~~l~gdy~~~l~~l~~~~~~ 154 (319)
T TIGR03439 76 SGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNF-SHVRCAGLLGTYDDGLAWLKRPENR 154 (319)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccC-CCeEEEEEEecHHHHHhhccccccc
Confidence 445899999999987655544 346899999999999999999872222 33544 88888662 21 2
Q ss_pred CCeeEEEecc-cccccChhHHHHHHHHHHh-cccCCcEEEEE
Q 024008 173 ELFDLIFDYT-FFCAIEPEMRAAWAQKIKD-FLKPDGELITL 212 (274)
Q Consensus 173 ~~fD~v~~~~-~~~~~~~~~~~~~l~~l~~-~L~~gG~l~~~ 212 (274)
....+++..+ ++..+++++...+++++.+ .|+|||.+++.
T Consensus 155 ~~~r~~~flGSsiGNf~~~ea~~fL~~~~~~~l~~~d~lLiG 196 (319)
T TIGR03439 155 SRPTTILWLGSSIGNFSRPEAAAFLAGFLATALSPSDSFLIG 196 (319)
T ss_pred CCccEEEEeCccccCCCHHHHHHHHHHHHHhhCCCCCEEEEe
Confidence 3456776664 8999998888999999999 99999998873
No 203
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=98.75 E-value=1.7e-07 Score=74.82 Aligned_cols=119 Identities=19% Similarity=0.251 Sum_probs=91.4
Q ss_pred CeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC-CC---CCCCeeEEEeccccc
Q 024008 110 GRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT-WC---PTELFDLIFDYTFFC 185 (274)
Q Consensus 110 ~~vLDiG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~---~~~~fD~v~~~~~~~ 185 (274)
.++|||||=+..+...- ..-..|+.||+++. .-.+.+.|+.+ +. +.++||+|.++.|+.
T Consensus 53 lrlLEVGals~~N~~s~-~~~fdvt~IDLns~----------------~~~I~qqDFm~rplp~~~~e~FdvIs~SLVLN 115 (219)
T PF11968_consen 53 LRLLEVGALSTDNACST-SGWFDVTRIDLNSQ----------------HPGILQQDFMERPLPKNESEKFDVISLSLVLN 115 (219)
T ss_pred ceEEeecccCCCCcccc-cCceeeEEeecCCC----------------CCCceeeccccCCCCCCcccceeEEEEEEEEe
Confidence 59999999655544321 13348999999873 24578888887 33 357899999999999
Q ss_pred ccC-hhHHHHHHHHHHhcccCCcE-----EEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcEEEEee
Q 024008 186 AIE-PEMRAAWAQKIKDFLKPDGE-----LITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAISIVD 248 (274)
Q Consensus 186 ~~~-~~~~~~~l~~l~~~L~~gG~-----l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gf~~~~~~~ 248 (274)
+++ +..+-..+.++.+.|+|+|. ++++...+... + ...++.+.+.++++.-||..++.+.
T Consensus 116 fVP~p~~RG~Ml~r~~~fL~~~g~~~~~~LFlVlP~~Cv~--N-SRy~~~~~l~~im~~LGf~~~~~~~ 181 (219)
T PF11968_consen 116 FVPDPKQRGEMLRRAHKFLKPPGLSLFPSLFLVLPLPCVT--N-SRYMTEERLREIMESLGFTRVKYKK 181 (219)
T ss_pred eCCCHHHHHHHHHHHHHHhCCCCccCcceEEEEeCchHhh--c-ccccCHHHHHHHHHhCCcEEEEEEe
Confidence 997 56888999999999999999 88876544321 2 2235889999999999999988866
No 204
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=98.69 E-value=1.4e-07 Score=76.07 Aligned_cols=132 Identities=17% Similarity=0.163 Sum_probs=103.0
Q ss_pred CCeEEEEcCCcchhHHHhh--CCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCC-eeEEEeccccc
Q 024008 109 KGRALVPGCGTGYDVVAMA--SPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTEL-FDLIFDYTFFC 185 (274)
Q Consensus 109 ~~~vLDiG~G~G~~~~~l~--~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~-fD~v~~~~~~~ 185 (274)
+.+++|||+|.|.-++.++ .+..+++-+|....-+...+....+.++ +|++++.+.+.+.....+ ||+|.+..+-.
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~FL~~~~~eL~L-~nv~i~~~RaE~~~~~~~~~D~vtsRAva~ 146 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAFLREVKKELGL-ENVEIVHGRAEEFGQEKKQYDVVTSRAVAS 146 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHHHHHHHHHHHhCC-CCeEEehhhHhhcccccccCcEEEeehccc
Confidence 5799999999999988755 4777899999999999999988888776 469999999988655444 99999987733
Q ss_pred ccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcEEEEeecccccCC
Q 024008 186 AIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAISIVDNKLAIGP 255 (274)
Q Consensus 186 ~~~~~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gf~~~~~~~~~~~~~~ 255 (274)
+..+++-+..++++||.++..-+.... -...+..+.....|+.+..+.....+...
T Consensus 147 ------L~~l~e~~~pllk~~g~~~~~k~~~~~--------~e~~e~~~a~~~~~~~~~~~~~~~~p~~~ 202 (215)
T COG0357 147 ------LNVLLELCLPLLKVGGGFLAYKGLAGK--------DELPEAEKAILPLGGQVEKVFSLTVPELD 202 (215)
T ss_pred ------hHHHHHHHHHhcccCCcchhhhHHhhh--------hhHHHHHHHHHhhcCcEEEEEEeecCCCC
Confidence 345667788999999987654432211 13567777888889999999887776664
No 205
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=98.69 E-value=2.1e-07 Score=77.41 Aligned_cols=129 Identities=18% Similarity=0.095 Sum_probs=88.5
Q ss_pred CCCCeEEEEcCCcchhHHHhhCC--CCeEEEEeCChHHHHHHHHHhhcCC---CCcceEEEEcccCCC--CCCC-CeeEE
Q 024008 107 LPKGRALVPGCGTGYDVVAMASP--ERYVVGLEISDIAIKKAEELSSSLP---NAKFVSFLKADFFTW--CPTE-LFDLI 178 (274)
Q Consensus 107 ~~~~~vLDiG~G~G~~~~~l~~~--~~~v~~iD~s~~~~~~a~~~~~~~~---~~~~v~~~~~d~~~~--~~~~-~fD~v 178 (274)
..+.+||-||.|.|..+..+.+. ..+++++|+++.+++.|++..+... .++|++++.+|.... ...+ +||+|
T Consensus 75 ~~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~~~~yDvI 154 (246)
T PF01564_consen 75 PNPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQEEKYDVI 154 (246)
T ss_dssp SST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSSST-EEEE
T ss_pred CCcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhccCCcccEE
Confidence 35789999999999999999883 3599999999999999999876421 247899999999872 2234 89999
Q ss_pred EecccccccChh--HHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCC
Q 024008 179 FDYTFFCAIEPE--MRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGF 241 (274)
Q Consensus 179 ~~~~~~~~~~~~--~~~~~l~~l~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gf 241 (274)
+.-..-...+.. ....+++.+.+.|+|||++++...++... .-....+.+.+++...
T Consensus 155 i~D~~dp~~~~~~l~t~ef~~~~~~~L~~~Gv~v~~~~~~~~~------~~~~~~i~~tl~~~F~ 213 (246)
T PF01564_consen 155 IVDLTDPDGPAPNLFTREFYQLCKRRLKPDGVLVLQAGSPFLH------PELFKSILKTLRSVFP 213 (246)
T ss_dssp EEESSSTTSCGGGGSSHHHHHHHHHHEEEEEEEEEEEEETTTT------HHHHHHHHHHHHTTSS
T ss_pred EEeCCCCCCCcccccCHHHHHHHHhhcCCCcEEEEEccCcccc------hHHHHHHHHHHHHhCC
Confidence 974322111111 12578899999999999999876332211 0123455667777655
No 206
>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=98.69 E-value=1.8e-07 Score=76.59 Aligned_cols=89 Identities=21% Similarity=0.222 Sum_probs=73.8
Q ss_pred HHHHHhcC-CCCCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCee
Q 024008 98 IVHLHQSG-ALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFD 176 (274)
Q Consensus 98 ~~~~~~~~-~~~~~~vLDiG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~fD 176 (274)
+.+++... ..+++.|||+|.|||.++..+.+.+.+|+++|+++.++....++...-..+.+..++.+|+.+... ..||
T Consensus 47 ~~~I~~ka~~k~tD~VLEvGPGTGnLT~~lLe~~kkVvA~E~Dprmvael~krv~gtp~~~kLqV~~gD~lK~d~-P~fd 125 (315)
T KOG0820|consen 47 IDQIVEKADLKPTDVVLEVGPGTGNLTVKLLEAGKKVVAVEIDPRMVAELEKRVQGTPKSGKLQVLHGDFLKTDL-PRFD 125 (315)
T ss_pred HHHHHhccCCCCCCEEEEeCCCCCHHHHHHHHhcCeEEEEecCcHHHHHHHHHhcCCCccceeeEEecccccCCC-cccc
Confidence 34444444 345689999999999999999999999999999999999999999888777899999999998542 3589
Q ss_pred EEEeccccccc
Q 024008 177 LIFDYTFFCAI 187 (274)
Q Consensus 177 ~v~~~~~~~~~ 187 (274)
.++++-.+...
T Consensus 126 ~cVsNlPyqIS 136 (315)
T KOG0820|consen 126 GCVSNLPYQIS 136 (315)
T ss_pred eeeccCCcccc
Confidence 99987666543
No 207
>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.66 E-value=3.8e-08 Score=72.88 Aligned_cols=79 Identities=19% Similarity=0.294 Sum_probs=66.7
Q ss_pred CCCCCeEEEEcCCcchhHHHhhCCCC-eEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCC-CCCeeEEEeccc
Q 024008 106 ALPKGRALVPGCGTGYDVVAMASPER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP-TELFDLIFDYTF 183 (274)
Q Consensus 106 ~~~~~~vLDiG~G~G~~~~~l~~~~~-~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~-~~~fD~v~~~~~ 183 (274)
...+++++|+|||.|.+....+-.+. .|+|+|++|++++.+.+|..+..+ .++++++|+..+.+ .+.||.++.+..
T Consensus 46 diEgkkl~DLgcgcGmLs~a~sm~~~e~vlGfDIdpeALEIf~rNaeEfEv--qidlLqcdildle~~~g~fDtaviNpp 123 (185)
T KOG3420|consen 46 DIEGKKLKDLGCGCGMLSIAFSMPKNESVLGFDIDPEALEIFTRNAEEFEV--QIDLLQCDILDLELKGGIFDTAVINPP 123 (185)
T ss_pred cccCcchhhhcCchhhhHHHhhcCCCceEEeeecCHHHHHHHhhchHHhhh--hhheeeeeccchhccCCeEeeEEecCC
Confidence 46788999999999999987777655 899999999999999999987654 47999999988443 368999999988
Q ss_pred ccc
Q 024008 184 FCA 186 (274)
Q Consensus 184 ~~~ 186 (274)
|.-
T Consensus 124 FGT 126 (185)
T KOG3420|consen 124 FGT 126 (185)
T ss_pred CCc
Confidence 764
No 208
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=98.66 E-value=3.9e-07 Score=75.42 Aligned_cols=86 Identities=13% Similarity=0.082 Sum_probs=70.5
Q ss_pred HHHHHhcCC-CCCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCC--C
Q 024008 98 IVHLHQSGA-LPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTE--L 174 (274)
Q Consensus 98 ~~~~~~~~~-~~~~~vLDiG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~--~ 174 (274)
+...+.... .++..|||||+|.|.++..|++.+.+|+++|+++..++..++..... ++++++.+|+.+...+. .
T Consensus 19 ~~kIv~~a~~~~~d~VlEIGpG~GaLT~~Ll~~~~~v~aiEiD~~l~~~L~~~~~~~---~n~~vi~~DaLk~d~~~l~~ 95 (259)
T COG0030 19 IDKIVEAANISPGDNVLEIGPGLGALTEPLLERAARVTAIEIDRRLAEVLKERFAPY---DNLTVINGDALKFDFPSLAQ 95 (259)
T ss_pred HHHHHHhcCCCCCCeEEEECCCCCHHHHHHHhhcCeEEEEEeCHHHHHHHHHhcccc---cceEEEeCchhcCcchhhcC
Confidence 444555443 34589999999999999999999999999999999999999997633 57999999999855444 6
Q ss_pred eeEEEecccccc
Q 024008 175 FDLIFDYTFFCA 186 (274)
Q Consensus 175 fD~v~~~~~~~~ 186 (274)
++.|+++-.+.-
T Consensus 96 ~~~vVaNlPY~I 107 (259)
T COG0030 96 PYKVVANLPYNI 107 (259)
T ss_pred CCEEEEcCCCcc
Confidence 889998877663
No 209
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=98.65 E-value=8.9e-08 Score=84.52 Aligned_cols=98 Identities=14% Similarity=0.015 Sum_probs=77.9
Q ss_pred CCeEEEEcCCcchhHHHhhC-CC-CeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCC-CCCeeEEEeccccc
Q 024008 109 KGRALVPGCGTGYDVVAMAS-PE-RYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP-TELFDLIFDYTFFC 185 (274)
Q Consensus 109 ~~~vLDiG~G~G~~~~~l~~-~~-~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~-~~~fD~v~~~~~~~ 185 (274)
+.+|||++||+|..++.++. .+ .+|+++|+++.+++.+++|+..+++. ++++..+|+..... .++||+|+... +.
T Consensus 58 ~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N~~~-~~~v~~~Da~~~l~~~~~fD~V~lDP-~G 135 (382)
T PRK04338 58 RESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELNGLE-NEKVFNKDANALLHEERKFDVVDIDP-FG 135 (382)
T ss_pred CCEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCC-ceEEEhhhHHHHHhhcCCCCEEEECC-CC
Confidence 35899999999999999876 34 38999999999999999999887764 57789999876433 46799999754 22
Q ss_pred ccChhHHHHHHHHHHhcccCCcEEEEEE
Q 024008 186 AIEPEMRAAWAQKIKDFLKPDGELITLM 213 (274)
Q Consensus 186 ~~~~~~~~~~l~~l~~~L~~gG~l~~~~ 213 (274)
.+ ..+++...+.+++||+++++.
T Consensus 136 -s~----~~~l~~al~~~~~~gilyvSA 158 (382)
T PRK04338 136 -SP----APFLDSAIRSVKRGGLLCVTA 158 (382)
T ss_pred -Cc----HHHHHHHHHHhcCCCEEEEEe
Confidence 21 356777777789999999974
No 210
>KOG2730 consensus Methylase [General function prediction only]
Probab=98.64 E-value=4.9e-08 Score=77.37 Aligned_cols=99 Identities=19% Similarity=0.274 Sum_probs=79.1
Q ss_pred CCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCC-----CCCCeeEEEecc
Q 024008 108 PKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC-----PTELFDLIFDYT 182 (274)
Q Consensus 108 ~~~~vLDiG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~~~~fD~v~~~~ 182 (274)
....|+|.-||.|+.+++++..+..|++||++|.-+..|+.|++..|..++|+|++||+.+.. ....+|+|+.+.
T Consensus 94 ~~~~iidaf~g~gGntiqfa~~~~~VisIdiDPikIa~AkhNaeiYGI~~rItFI~GD~ld~~~~lq~~K~~~~~vf~sp 173 (263)
T KOG2730|consen 94 NAEVIVDAFCGVGGNTIQFALQGPYVIAIDIDPVKIACARHNAEVYGVPDRITFICGDFLDLASKLKADKIKYDCVFLSP 173 (263)
T ss_pred CcchhhhhhhcCCchHHHHHHhCCeEEEEeccHHHHHHHhccceeecCCceeEEEechHHHHHHHHhhhhheeeeeecCC
Confidence 457899999999999999999999999999999999999999999999889999999998732 234577888887
Q ss_pred cccccChhHHHHHHHHHHhcccCCcE
Q 024008 183 FFCAIEPEMRAAWAQKIKDFLKPDGE 208 (274)
Q Consensus 183 ~~~~~~~~~~~~~l~~l~~~L~~gG~ 208 (274)
.+..- +....-+-.+...+.|.|.
T Consensus 174 pwggp--~y~~~~~~DL~~~~~p~~~ 197 (263)
T KOG2730|consen 174 PWGGP--SYLRADVYDLETHLKPMGT 197 (263)
T ss_pred CCCCc--chhhhhhhhhhhhcchhHH
Confidence 76653 2223334456666666543
No 211
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=98.63 E-value=2e-07 Score=78.61 Aligned_cols=103 Identities=20% Similarity=0.226 Sum_probs=82.0
Q ss_pred CeEEEEcCCcchhHHHhhCC--CCeEEEEeCChHHHHHHHHHhhcCC--C-CcceEEEEcccCCCC--CCCCeeEEEecc
Q 024008 110 GRALVPGCGTGYDVVAMASP--ERYVVGLEISDIAIKKAEELSSSLP--N-AKFVSFLKADFFTWC--PTELFDLIFDYT 182 (274)
Q Consensus 110 ~~vLDiG~G~G~~~~~l~~~--~~~v~~iD~s~~~~~~a~~~~~~~~--~-~~~v~~~~~d~~~~~--~~~~fD~v~~~~ 182 (274)
++||-||.|.|..+..+.+. -.+++.+|+++..++.+++.++... . .+|++++.+|..+.. ..++||+|+.-.
T Consensus 78 k~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~~~fDvIi~D~ 157 (282)
T COG0421 78 KRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCEEKFDVIIVDS 157 (282)
T ss_pred CeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhCCCcCCEEEEcC
Confidence 69999999999999999983 3599999999999999999987653 2 479999999998832 234899999754
Q ss_pred cccccCh-h--HHHHHHHHHHhcccCCcEEEEEE
Q 024008 183 FFCAIEP-E--MRAAWAQKIKDFLKPDGELITLM 213 (274)
Q Consensus 183 ~~~~~~~-~--~~~~~l~~l~~~L~~gG~l~~~~ 213 (274)
.-. ..+ + -...+++.+.++|+++|+++...
T Consensus 158 tdp-~gp~~~Lft~eFy~~~~~~L~~~Gi~v~q~ 190 (282)
T COG0421 158 TDP-VGPAEALFTEEFYEGCRRALKEDGIFVAQA 190 (282)
T ss_pred CCC-CCcccccCCHHHHHHHHHhcCCCcEEEEec
Confidence 322 111 0 12578899999999999998874
No 212
>PRK00536 speE spermidine synthase; Provisional
Probab=98.63 E-value=3.9e-07 Score=75.95 Aligned_cols=98 Identities=14% Similarity=0.036 Sum_probs=75.2
Q ss_pred CCCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCC---CCcceEEEEcccCCCCCCCCeeEEEeccc
Q 024008 107 LPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLP---NAKFVSFLKADFFTWCPTELFDLIFDYTF 183 (274)
Q Consensus 107 ~~~~~vLDiG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~---~~~~v~~~~~d~~~~~~~~~fD~v~~~~~ 183 (274)
..+++||=||.|.|..++.+++-..+|+.+|+++++++.+++.++... .++|++++.. + .....++||+|+.-..
T Consensus 71 ~~pk~VLIiGGGDGg~~REvLkh~~~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~~-~-~~~~~~~fDVIIvDs~ 148 (262)
T PRK00536 71 KELKEVLIVDGFDLELAHQLFKYDTHVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQ-L-LDLDIKKYDLIICLQE 148 (262)
T ss_pred CCCCeEEEEcCCchHHHHHHHCcCCeeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEeeh-h-hhccCCcCCEEEEcCC
Confidence 446899999999999999999944599999999999999999766521 2467887752 2 1222468999996533
Q ss_pred ccccChhHHHHHHHHHHhcccCCcEEEEEE
Q 024008 184 FCAIEPEMRAAWAQKIKDFLKPDGELITLM 213 (274)
Q Consensus 184 ~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~ 213 (274)
++ ..+.+.++++|+|||+++.-.
T Consensus 149 ----~~---~~fy~~~~~~L~~~Gi~v~Qs 171 (262)
T PRK00536 149 ----PD---IHKIDGLKRMLKEDGVFISVA 171 (262)
T ss_pred ----CC---hHHHHHHHHhcCCCcEEEECC
Confidence 11 356789999999999998854
No 213
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=98.62 E-value=4.4e-08 Score=86.93 Aligned_cols=145 Identities=12% Similarity=0.146 Sum_probs=92.0
Q ss_pred CeEEEEcCCcchhHHHhhCCCCeEEEEe---CChHHHHHHHHHhhcCCCCcceEEEEccc--CC-CCCCCCeeEEEeccc
Q 024008 110 GRALVPGCGTGYDVVAMASPERYVVGLE---ISDIAIKKAEELSSSLPNAKFVSFLKADF--FT-WCPTELFDLIFDYTF 183 (274)
Q Consensus 110 ~~vLDiG~G~G~~~~~l~~~~~~v~~iD---~s~~~~~~a~~~~~~~~~~~~v~~~~~d~--~~-~~~~~~fD~v~~~~~ 183 (274)
+.+||+|||+|.++..+.+.+..+..+- ..+.++..|-++- +..+.+-+ .. +.|++.||+|.|..+
T Consensus 119 R~~LDvGcG~aSF~a~l~~r~V~t~s~a~~d~~~~qvqfaleRG--------vpa~~~~~~s~rLPfp~~~fDmvHcsrc 190 (506)
T PF03141_consen 119 RTALDVGCGVASFGAYLLERNVTTMSFAPNDEHEAQVQFALERG--------VPAMIGVLGSQRLPFPSNAFDMVHCSRC 190 (506)
T ss_pred EEEEeccceeehhHHHHhhCCceEEEcccccCCchhhhhhhhcC--------cchhhhhhccccccCCccchhhhhcccc
Confidence 5789999999999999999877555543 3445555665442 22222222 12 678899999999988
Q ss_pred ccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcEEEEeecccccCCccchhHHH
Q 024008 184 FCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAISIVDNKLAIGPRKGREKLG 263 (274)
Q Consensus 184 ~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gf~~~~~~~~~~~~~~~~~~~~~~ 263 (274)
+..+.... ..++-++.|+|+|||++++...+.... ......-....+.++.++.-|+.+.......-..-..+..++.
T Consensus 191 ~i~W~~~~-g~~l~evdRvLRpGGyfv~S~ppv~~r-~~~~~~~~~~~~~~l~~~lCW~~va~~~~~aIwqKp~~~~Cy~ 268 (506)
T PF03141_consen 191 LIPWHPND-GFLLFEVDRVLRPGGYFVLSGPPVYQR-TDEDLEEEWNAMEDLAKSLCWKKVAEKGDTAIWQKPTNNSCYQ 268 (506)
T ss_pred cccchhcc-cceeehhhhhhccCceEEecCCccccc-chHHHHHHHHHHHHHHHHHHHHHheeeCCEEEEeccCCchhhh
Confidence 77664332 457889999999999999877555411 1111112456677777777777766555433222222345554
Q ss_pred H
Q 024008 264 R 264 (274)
Q Consensus 264 ~ 264 (274)
.
T Consensus 269 ~ 269 (506)
T PF03141_consen 269 K 269 (506)
T ss_pred h
Confidence 3
No 214
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=98.60 E-value=9.8e-07 Score=77.38 Aligned_cols=144 Identities=19% Similarity=0.233 Sum_probs=86.5
Q ss_pred HhcCCCCCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCC-----------
Q 024008 102 HQSGALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC----------- 170 (274)
Q Consensus 102 ~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~----------- 170 (274)
++.....+..|||+-||.|.++..+++...+|+|+|.++++++.|++++..++. ++++|+.++..+..
T Consensus 190 ~~~l~~~~~~vlDlycG~G~fsl~la~~~~~V~gvE~~~~av~~A~~Na~~N~i-~n~~f~~~~~~~~~~~~~~~r~~~~ 268 (352)
T PF05958_consen 190 LEWLDLSKGDVLDLYCGVGTFSLPLAKKAKKVIGVEIVEEAVEDARENAKLNGI-DNVEFIRGDAEDFAKALAKAREFNR 268 (352)
T ss_dssp HHHCTT-TTEEEEES-TTTCCHHHHHCCSSEEEEEES-HHHHHHHHHHHHHTT---SEEEEE--SHHCCCHHCCS-GGTT
T ss_pred HHHhhcCCCcEEEEeecCCHHHHHHHhhCCeEEEeeCCHHHHHHHHHHHHHcCC-CcceEEEeeccchhHHHHhhHHHHh
Confidence 344444445899999999999999999999999999999999999999999887 47999987654311
Q ss_pred ------CCCCeeEEEecccccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccC-HHHHHHHHhcCCCcE
Q 024008 171 ------PTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVS-VSDYEEVLQPMGFQA 243 (274)
Q Consensus 171 ------~~~~fD~v~~~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~Gf~~ 243 (274)
....+|+|+.-.+=..++ ..+++.+.+ +.-++++++.+. | ..++ +.|.+ ||++
T Consensus 269 ~~~~~~~~~~~d~vilDPPR~G~~----~~~~~~~~~---~~~ivYvSCnP~-----------tlaRDl-~~L~~-~y~~ 328 (352)
T PF05958_consen 269 LKGIDLKSFKFDAVILDPPRAGLD----EKVIELIKK---LKRIVYVSCNPA-----------TLARDL-KILKE-GYKL 328 (352)
T ss_dssp GGGS-GGCTTESEEEE---TT-SC----HHHHHHHHH---SSEEEEEES-HH-----------HHHHHH-HHHHC-CEEE
T ss_pred hhhhhhhhcCCCEEEEcCCCCCch----HHHHHHHhc---CCeEEEEECCHH-----------HHHHHH-HHHhh-cCEE
Confidence 123689998544333333 233444433 345566666222 3 3344 44554 9999
Q ss_pred EEEeecccccCCccchhHHHHhhh
Q 024008 244 ISIVDNKLAIGPRKGREKLGRWKR 267 (274)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~ 267 (274)
..+...+. ++.-...|++.++.|
T Consensus 329 ~~v~~~Dm-FP~T~HvE~v~lL~r 351 (352)
T PF05958_consen 329 EKVQPVDM-FPQTHHVETVALLER 351 (352)
T ss_dssp EEEEEE-S-STTSS--EEEEEEEE
T ss_pred EEEEEeec-CCCCCcEEEEEEEEe
Confidence 88887543 233335666554433
No 215
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.58 E-value=6.2e-07 Score=72.41 Aligned_cols=149 Identities=19% Similarity=0.154 Sum_probs=102.3
Q ss_pred CCCCCeEEEEcCCcchhHHHhhCCCC-eEEEEeCChHHHHHHHHHhhcCCCCcce-EEEEcccCCCCC---CCCeeEEEe
Q 024008 106 ALPKGRALVPGCGTGYDVVAMASPER-YVVGLEISDIAIKKAEELSSSLPNAKFV-SFLKADFFTWCP---TELFDLIFD 180 (274)
Q Consensus 106 ~~~~~~vLDiG~G~G~~~~~l~~~~~-~v~~iD~s~~~~~~a~~~~~~~~~~~~v-~~~~~d~~~~~~---~~~fD~v~~ 180 (274)
..++..+||+|+.||.++..+.+.|+ +|+++|....+++.--++- +++ .+...|+....+ .+..|++++
T Consensus 77 ~~k~kv~LDiGsSTGGFTd~lLq~gAk~VyavDVG~~Ql~~kLR~d------~rV~~~E~tN~r~l~~~~~~~~~d~~v~ 150 (245)
T COG1189 77 DVKGKVVLDIGSSTGGFTDVLLQRGAKHVYAVDVGYGQLHWKLRND------PRVIVLERTNVRYLTPEDFTEKPDLIVI 150 (245)
T ss_pred CCCCCEEEEecCCCccHHHHHHHcCCcEEEEEEccCCccCHhHhcC------CcEEEEecCChhhCCHHHcccCCCeEEE
Confidence 45678999999999999999999887 8999999887665443332 333 445556655322 246788887
Q ss_pred cccccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCC----------CCCCcc-cCHHHHHHHHhcCCCcEEEEeec
Q 024008 181 YTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHV----------GGPPYK-VSVSDYEEVLQPMGFQAISIVDN 249 (274)
Q Consensus 181 ~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~~----------~~~~~~-~~~~~~~~~~~~~Gf~~~~~~~~ 249 (274)
--.|.. ...++..+..++++++.++...-+..... ..+..+ .....+.++++..||.+..+...
T Consensus 151 DvSFIS-----L~~iLp~l~~l~~~~~~~v~LvKPQFEagr~~v~kkGvv~d~~~~~~v~~~i~~~~~~~g~~~~gl~~S 225 (245)
T COG1189 151 DVSFIS-----LKLILPALLLLLKDGGDLVLLVKPQFEAGREQVGKKGVVRDPKLHAEVLSKIENFAKELGFQVKGLIKS 225 (245)
T ss_pred Eeehhh-----HHHHHHHHHHhcCCCceEEEEecchhhhhhhhcCcCceecCcchHHHHHHHHHHHHhhcCcEEeeeEcc
Confidence 655553 35788999999999999887664432210 011111 24678889999999999999885
Q ss_pred ccccCCccchhHHHHhhh
Q 024008 250 KLAIGPRKGREKLGRWKR 267 (274)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~ 267 (274)
+ +.+..++.++..|.+
T Consensus 226 p--i~G~~GNiE~l~~~~ 241 (245)
T COG1189 226 P--IKGGKGNIEFLLLLK 241 (245)
T ss_pred C--ccCCCCcEeeeeeee
Confidence 4 444445556665554
No 216
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=98.57 E-value=4.6e-07 Score=83.09 Aligned_cols=104 Identities=17% Similarity=0.176 Sum_probs=81.5
Q ss_pred CCeEEEEcCCcchhHHHhhC--CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC---CCCCCCeeEEEeccc
Q 024008 109 KGRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT---WCPTELFDLIFDYTF 183 (274)
Q Consensus 109 ~~~vLDiG~G~G~~~~~l~~--~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~---~~~~~~fD~v~~~~~ 183 (274)
...+||||||.|.++..+|. +...++|+|+....+..+.......++ .|+.++..|+.. ..+++++|.|+.+..
T Consensus 348 ~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~~~l-~N~~~~~~~~~~~~~~~~~~sv~~i~i~FP 426 (506)
T PRK01544 348 RKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGEQNI-TNFLLFPNNLDLILNDLPNNSLDGIYILFP 426 (506)
T ss_pred CceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHcCC-CeEEEEcCCHHHHHHhcCcccccEEEEECC
Confidence 36899999999999999988 677999999999999988888777665 468888888743 456788999997654
Q ss_pred ccccChh------HHHHHHHHHHhcccCCcEEEEEE
Q 024008 184 FCAIEPE------MRAAWAQKIKDFLKPDGELITLM 213 (274)
Q Consensus 184 ~~~~~~~------~~~~~l~~l~~~L~~gG~l~~~~ 213 (274)
=-+.-.. .-..+++.+.+.|+|||.+.+..
T Consensus 427 DPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~~T 462 (506)
T PRK01544 427 DPWIKNKQKKKRIFNKERLKILQDKLKDNGNLVFAS 462 (506)
T ss_pred CCCCCCCCccccccCHHHHHHHHHhcCCCCEEEEEc
Confidence 3221000 01578899999999999998866
No 217
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=98.57 E-value=7.7e-07 Score=73.74 Aligned_cols=132 Identities=17% Similarity=0.193 Sum_probs=83.1
Q ss_pred CeEEEEcCCcc--hhHHHhhC---CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCC---CC---------C
Q 024008 110 GRALVPGCGTG--YDVVAMAS---PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW---CP---------T 172 (274)
Q Consensus 110 ~~vLDiG~G~G--~~~~~l~~---~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~---~~---------~ 172 (274)
...||||||-- .+...+++ +.++|+-+|.+|-++..++..+..... .+..++.+|+.++ .. -
T Consensus 70 rQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~~-g~t~~v~aD~r~p~~iL~~p~~~~~lD~ 148 (267)
T PF04672_consen 70 RQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNPR-GRTAYVQADLRDPEAILAHPEVRGLLDF 148 (267)
T ss_dssp -EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-TT-SEEEEEE--TT-HHHHHCSHHHHCC--T
T ss_pred ceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCCC-ccEEEEeCCCCCHHHHhcCHHHHhcCCC
Confidence 68999999964 34445544 788999999999999999999876631 2489999999872 11 1
Q ss_pred CCeeEEEecccccccCh-hHHHHHHHHHHhcccCCcEEEEEEccCCCC-------------CCCCCcccCHHHHHHHHhc
Q 024008 173 ELFDLIFDYTFFCAIEP-EMRAAWAQKIKDFLKPDGELITLMFPISDH-------------VGGPPYKVSVSDYEEVLQP 238 (274)
Q Consensus 173 ~~fD~v~~~~~~~~~~~-~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~ 238 (274)
.+.=.++...+++++++ ++...++..+.+.|.||.+++++....... ...+.+.-+.+++.++|.
T Consensus 149 ~rPVavll~~vLh~v~D~~dp~~iv~~l~d~lapGS~L~ish~t~d~~p~~~~~~~~~~~~~~~~~~~Rs~~ei~~~f~- 227 (267)
T PF04672_consen 149 DRPVAVLLVAVLHFVPDDDDPAGIVARLRDALAPGSYLAISHATDDGAPERAEALEAVYAQAGSPGRPRSREEIAAFFD- 227 (267)
T ss_dssp TS--EEEECT-GGGS-CGCTHHHHHHHHHCCS-TT-EEEEEEEB-TTSHHHHHHHHHHHHHCCS----B-HHHHHHCCT-
T ss_pred CCCeeeeeeeeeccCCCccCHHHHHHHHHHhCCCCceEEEEecCCCCCHHHHHHHHHHHHcCCCCceecCHHHHHHHcC-
Confidence 22335667788999865 678899999999999999999988765432 122233357888888887
Q ss_pred CCCcEE
Q 024008 239 MGFQAI 244 (274)
Q Consensus 239 ~Gf~~~ 244 (274)
||+++
T Consensus 228 -g~elv 232 (267)
T PF04672_consen 228 -GLELV 232 (267)
T ss_dssp -TSEE-
T ss_pred -CCccC
Confidence 78764
No 218
>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]
Probab=98.55 E-value=8.3e-08 Score=83.64 Aligned_cols=141 Identities=22% Similarity=0.255 Sum_probs=110.0
Q ss_pred CCCCCeEEEEcCCcchhHHHhhC-CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC-CCCCCCeeEEEeccc
Q 024008 106 ALPKGRALVPGCGTGYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT-WCPTELFDLIFDYTF 183 (274)
Q Consensus 106 ~~~~~~vLDiG~G~G~~~~~l~~-~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~~~~~fD~v~~~~~ 183 (274)
..++..++|+|||.|....+++. .+..++|+|.++..+..+........++++..++.+|+.+ +.+++.||.+.+..+
T Consensus 108 ~~~~~~~~~~~~g~~~~~~~i~~f~~~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~~~~~~~~~~fedn~fd~v~~ld~ 187 (364)
T KOG1269|consen 108 CFPGSKVLDVGTGVGGPSRYIAVFKKAGVVGLDNNAYEAFRANELAKKAYLDNKCNFVVADFGKMPFEDNTFDGVRFLEV 187 (364)
T ss_pred CcccccccccCcCcCchhHHHHHhccCCccCCCcCHHHHHHHHHHHHHHHhhhhcceehhhhhcCCCCccccCcEEEEee
Confidence 34556899999999999999988 6789999999999999998888777777788888999988 678899999999999
Q ss_pred ccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCC-----------------CCCcccCHHHHHHHHhcCCCcEEEE
Q 024008 184 FCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVG-----------------GPPYKVSVSDYEEVLQPMGFQAISI 246 (274)
Q Consensus 184 ~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~Gf~~~~~ 246 (274)
.+|.+ ....++.+++++++|||+++..++....... ..+.......+-.++...||.....
T Consensus 188 ~~~~~--~~~~~y~Ei~rv~kpGG~~i~~e~i~~~~~~~~~~~~~~i~~~i~~gd~~~~~~~~~d~~~~~~~~~~~~~~~ 265 (364)
T KOG1269|consen 188 VCHAP--DLEKVYAEIYRVLKPGGLFIVKEWIKTAKLKKPNSEHVDILLEIEGGDALPAETFNTDVFDLLKSFGFEHLKL 265 (364)
T ss_pred cccCC--cHHHHHHHHhcccCCCceEEeHHHHHhhhccCCCcccccccCceeccccccceeccccHHHHHhhccchhhhh
Confidence 99985 4467899999999999999986654322100 0122234555666777777776664
Q ss_pred ee
Q 024008 247 VD 248 (274)
Q Consensus 247 ~~ 248 (274)
++
T Consensus 266 ~~ 267 (364)
T KOG1269|consen 266 EK 267 (364)
T ss_pred cc
Confidence 43
No 219
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=98.53 E-value=1.2e-06 Score=76.00 Aligned_cols=107 Identities=17% Similarity=0.248 Sum_probs=83.3
Q ss_pred CCCCeEEEEcCCcchhHHHhhCCCC-----------------------------------------eEEEEeCChHHHHH
Q 024008 107 LPKGRALVPGCGTGYDVVAMASPER-----------------------------------------YVVGLEISDIAIKK 145 (274)
Q Consensus 107 ~~~~~vLDiG~G~G~~~~~l~~~~~-----------------------------------------~v~~iD~s~~~~~~ 145 (274)
.++..++|.-||+|.+++..+..+. .++|+|+++.+++.
T Consensus 190 ~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~~~G~Did~r~i~~ 269 (381)
T COG0116 190 KPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPIIYGSDIDPRHIEG 269 (381)
T ss_pred CCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccceEEEecCCHHHHHH
Confidence 3446899999999999987776321 37799999999999
Q ss_pred HHHHhhcCCCCcceEEEEcccCCCCCC-CCeeEEEecccccc-cChh-----HHHHHHHHHHhcccCCcEEEEEE
Q 024008 146 AEELSSSLPNAKFVSFLKADFFTWCPT-ELFDLIFDYTFFCA-IEPE-----MRAAWAQKIKDFLKPDGELITLM 213 (274)
Q Consensus 146 a~~~~~~~~~~~~v~~~~~d~~~~~~~-~~fD~v~~~~~~~~-~~~~-----~~~~~l~~l~~~L~~gG~l~~~~ 213 (274)
|+.|+...|+.+.|+|.++|+..+.++ +.+|+|+++.++.- +..+ ....+.+.+.+.++--+..+++.
T Consensus 270 Ak~NA~~AGv~d~I~f~~~d~~~l~~~~~~~gvvI~NPPYGeRlg~~~~v~~LY~~fg~~lk~~~~~ws~~v~tt 344 (381)
T COG0116 270 AKANARAAGVGDLIEFKQADATDLKEPLEEYGVVISNPPYGERLGSEALVAKLYREFGRTLKRLLAGWSRYVFTT 344 (381)
T ss_pred HHHHHHhcCCCceEEEEEcchhhCCCCCCcCCEEEeCCCcchhcCChhhHHHHHHHHHHHHHHHhcCCceEEEEc
Confidence 999999999999999999999986555 88999999988764 2221 23445556667777666666654
No 220
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=98.50 E-value=1.5e-06 Score=74.01 Aligned_cols=137 Identities=14% Similarity=0.234 Sum_probs=96.7
Q ss_pred CeEEEEcCCcchhHHHhhC-CC-CeEEEEeCChHHHHHHHHHh--hcC---C-CCcceEEEEcccCCCC--CCCCeeEEE
Q 024008 110 GRALVPGCGTGYDVVAMAS-PE-RYVVGLEISDIAIKKAEELS--SSL---P-NAKFVSFLKADFFTWC--PTELFDLIF 179 (274)
Q Consensus 110 ~~vLDiG~G~G~~~~~l~~-~~-~~v~~iD~s~~~~~~a~~~~--~~~---~-~~~~v~~~~~d~~~~~--~~~~fD~v~ 179 (274)
.+||-+|.|.|..+..+.+ ++ .+++-+|++|++++.++.+. ... . .+++++++..|.+++. ..+.||.|+
T Consensus 291 ~~vLvlGGGDGLAlRellkyP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a~~~fD~vI 370 (508)
T COG4262 291 RSVLVLGGGDGLALRELLKYPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTAADMFDVVI 370 (508)
T ss_pred ceEEEEcCCchHHHHHHHhCCCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhhcccccEEE
Confidence 6999999999999999998 54 49999999999999998432 221 1 2578999999999843 345899998
Q ss_pred eccc------ccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcEEEEeeccccc
Q 024008 180 DYTF------FCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAISIVDNKLAI 253 (274)
Q Consensus 180 ~~~~------~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gf~~~~~~~~~~~~ 253 (274)
.-.. +..+ ....+..-+.+.|+++|.+++-..++..... .--.+.+.++++||.+...+.....+
T Consensus 371 VDl~DP~tps~~rl---YS~eFY~ll~~~l~e~Gl~VvQags~y~tp~------vfw~i~aTik~AG~~~~Pyhv~VPTF 441 (508)
T COG4262 371 VDLPDPSTPSIGRL---YSVEFYRLLSRHLAETGLMVVQAGSPYFTPR------VFWRIDATIKSAGYRVWPYHVHVPTF 441 (508)
T ss_pred EeCCCCCCcchhhh---hhHHHHHHHHHhcCcCceEEEecCCCccCCc------eeeeehhHHHhCcceeeeeEEecCcc
Confidence 5311 1111 1245667889999999999987633321111 12356778899999887776655444
Q ss_pred CC
Q 024008 254 GP 255 (274)
Q Consensus 254 ~~ 255 (274)
+.
T Consensus 442 Ge 443 (508)
T COG4262 442 GE 443 (508)
T ss_pred cc
Confidence 43
No 221
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=98.50 E-value=1.7e-06 Score=82.60 Aligned_cols=106 Identities=16% Similarity=0.118 Sum_probs=79.0
Q ss_pred CCCeEEEEcCCcchhHHHhhC------C--------------------------------------CCeEEEEeCChHHH
Q 024008 108 PKGRALVPGCGTGYDVVAMAS------P--------------------------------------ERYVVGLEISDIAI 143 (274)
Q Consensus 108 ~~~~vLDiG~G~G~~~~~l~~------~--------------------------------------~~~v~~iD~s~~~~ 143 (274)
++..++|.+||+|.+++..+. + ..+++|+|+++.++
T Consensus 190 ~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~~~~~~~i~G~Did~~av 269 (702)
T PRK11783 190 EGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGLAELPSKFYGSDIDPRVI 269 (702)
T ss_pred CCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhcccccCceEEEEECCHHHH
Confidence 457999999999999877653 1 12699999999999
Q ss_pred HHHHHHhhcCCCCcceEEEEcccCCCCC---CCCeeEEEeccccccc-C-hhHHHHHHHHHHhcc---cCCcEEEEEE
Q 024008 144 KKAEELSSSLPNAKFVSFLKADFFTWCP---TELFDLIFDYTFFCAI-E-PEMRAAWAQKIKDFL---KPDGELITLM 213 (274)
Q Consensus 144 ~~a~~~~~~~~~~~~v~~~~~d~~~~~~---~~~fD~v~~~~~~~~~-~-~~~~~~~l~~l~~~L---~~gG~l~~~~ 213 (274)
+.|+.|+...++.+.++|..+|+.+... .++||+|+++..+..- . ......+...+.+.+ .+|+.+++..
T Consensus 270 ~~A~~N~~~~g~~~~i~~~~~D~~~~~~~~~~~~~d~IvtNPPYg~r~~~~~~l~~lY~~lg~~lk~~~~g~~~~llt 347 (702)
T PRK11783 270 QAARKNARRAGVAELITFEVKDVADLKNPLPKGPTGLVISNPPYGERLGEEPALIALYSQLGRRLKQQFGGWNAALFS 347 (702)
T ss_pred HHHHHHHHHcCCCcceEEEeCChhhcccccccCCCCEEEECCCCcCccCchHHHHHHHHHHHHHHHHhCCCCeEEEEe
Confidence 9999999999988889999999987432 2469999999887542 1 223333334444444 4888877665
No 222
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=98.49 E-value=3.3e-06 Score=76.38 Aligned_cols=110 Identities=20% Similarity=0.147 Sum_probs=83.5
Q ss_pred CCCCCeEEEEcCCcchhHHHhhC---CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCC--CCCCCeeEEEe
Q 024008 106 ALPKGRALVPGCGTGYDVVAMAS---PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW--CPTELFDLIFD 180 (274)
Q Consensus 106 ~~~~~~vLDiG~G~G~~~~~l~~---~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--~~~~~fD~v~~ 180 (274)
..++.+|||++||.|.=+..++. ....+++.|+++..+...++++...|.. ++.+...|...+ ...+.||.|+.
T Consensus 111 ~~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~~-nv~v~~~D~~~~~~~~~~~fD~ILv 189 (470)
T PRK11933 111 DNAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGVS-NVALTHFDGRVFGAALPETFDAILL 189 (470)
T ss_pred CCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-eEEEEeCchhhhhhhchhhcCeEEE
Confidence 45678999999999999988877 2348999999999999999999998874 588888887653 22467999995
Q ss_pred ccccc------c-------cChhH-------HHHHHHHHHhcccCCcEEEEEEccC
Q 024008 181 YTFFC------A-------IEPEM-------RAAWAQKIKDFLKPDGELITLMFPI 216 (274)
Q Consensus 181 ~~~~~------~-------~~~~~-------~~~~l~~l~~~L~~gG~l~~~~~~~ 216 (274)
-.... . ++++. -..++....+.|+|||+++.++++.
T Consensus 190 DaPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYSTCT~ 245 (470)
T PRK11933 190 DAPCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYSTCTL 245 (470)
T ss_pred cCCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECCCC
Confidence 43322 1 11111 1578899999999999998777554
No 223
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=98.46 E-value=1.1e-06 Score=66.93 Aligned_cols=84 Identities=19% Similarity=0.260 Sum_probs=67.2
Q ss_pred CCCCeEEEEcCCcchhHHHhhC------CCCeEEEEeCChHHHHHHHHHhhcCC--CCcceEEEEcccCCCCCCCCeeEE
Q 024008 107 LPKGRALVPGCGTGYDVVAMAS------PERYVVGLEISDIAIKKAEELSSSLP--NAKFVSFLKADFFTWCPTELFDLI 178 (274)
Q Consensus 107 ~~~~~vLDiG~G~G~~~~~l~~------~~~~v~~iD~s~~~~~~a~~~~~~~~--~~~~v~~~~~d~~~~~~~~~fD~v 178 (274)
.+..+|+|+|||.|+++..++. .+.+|+++|.++..++.+.++....+ +..++.+..++..........+++
T Consensus 24 ~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (141)
T PF13679_consen 24 KRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKLGSDLEKRLSFIQGDIADESSSDPPDIL 103 (141)
T ss_pred CCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHhcchhhccchhhccchhhhcccCCCeEE
Confidence 4457999999999999998887 57799999999999999998887765 445677777777654446678999
Q ss_pred EecccccccChh
Q 024008 179 FDYTFFCAIEPE 190 (274)
Q Consensus 179 ~~~~~~~~~~~~ 190 (274)
+..++-..+.+.
T Consensus 104 vgLHaCG~Ls~~ 115 (141)
T PF13679_consen 104 VGLHACGDLSDR 115 (141)
T ss_pred EEeecccchHHH
Confidence 988887766543
No 224
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=98.44 E-value=1.5e-06 Score=75.03 Aligned_cols=137 Identities=19% Similarity=0.197 Sum_probs=85.2
Q ss_pred CCCCeEEEEcCCcchhHHHhhC---------CCCeEEEEeCChHHHHHHHHHhhcCCCC-cceEEEEcccCCCCC---CC
Q 024008 107 LPKGRALVPGCGTGYDVVAMAS---------PERYVVGLEISDIAIKKAEELSSSLPNA-KFVSFLKADFFTWCP---TE 173 (274)
Q Consensus 107 ~~~~~vLDiG~G~G~~~~~l~~---------~~~~v~~iD~s~~~~~~a~~~~~~~~~~-~~v~~~~~d~~~~~~---~~ 173 (274)
.++.+|+|..||+|.++..+.+ ...+++|+|+++.++..|+.++.-.+.. .+..+..+|...... ..
T Consensus 45 ~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~~~~~~i~~~d~l~~~~~~~~~ 124 (311)
T PF02384_consen 45 KKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGIDNSNINIIQGDSLENDKFIKNQ 124 (311)
T ss_dssp -TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHHCBGCEEEES-TTTSHSCTST-
T ss_pred cccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhcccccccccccccccccccccccc
Confidence 3445899999999999877765 4669999999999999998876554432 234688888876222 46
Q ss_pred CeeEEEeccccccc--Ch-----------------hHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHH
Q 024008 174 LFDLIFDYTFFCAI--EP-----------------EMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEE 234 (274)
Q Consensus 174 ~fD~v~~~~~~~~~--~~-----------------~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (274)
+||+|+++.++... .. ..-..++.++.+.|++||++.++......... .....+++
T Consensus 125 ~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~~~Ilp~~~L~~~-----~~~~~iR~ 199 (311)
T PF02384_consen 125 KFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGRAAIILPNGFLFSS-----SSEKKIRK 199 (311)
T ss_dssp -EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEEEEEEEEHHHHHGS-----THHHHHHH
T ss_pred ccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhcccccceeEEecchhhhcc-----chHHHHHH
Confidence 89999999887644 10 11135889999999999997766632210000 02356766
Q ss_pred HHhcCCCcEEEEeec
Q 024008 235 VLQPMGFQAISIVDN 249 (274)
Q Consensus 235 ~~~~~Gf~~~~~~~~ 249 (274)
.+-+.++ +..+...
T Consensus 200 ~ll~~~~-i~aVI~L 213 (311)
T PF02384_consen 200 YLLENGY-IEAVISL 213 (311)
T ss_dssp HHHHHEE-EEEEEE-
T ss_pred HHHhhch-hhEEeec
Confidence 6665443 4444443
No 225
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=98.42 E-value=1.7e-06 Score=67.68 Aligned_cols=120 Identities=20% Similarity=0.261 Sum_probs=87.8
Q ss_pred ccchhHhhhcCCCCccCCCccHHHHHHHhcC--CCCCCeEEEEcCCcchhHHHhhCCCC-eEEEEeCChHHHHHHHHHhh
Q 024008 75 SGGWEKCWEEGLTPWDIGQPAPIIVHLHQSG--ALPKGRALVPGCGTGYDVVAMASPER-YVVGLEISDIAIKKAEELSS 151 (274)
Q Consensus 75 ~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~vLDiG~G~G~~~~~l~~~~~-~v~~iD~s~~~~~~a~~~~~ 151 (274)
+.+|.-.|..+. .+.+++... ...+++|||+|+|+|..++..++.|+ .|+..|+.|......+-|..
T Consensus 54 Ppfwa~~WagG~----------~lAR~i~~~PetVrgkrVLd~gagsgLvaIAaa~aGA~~v~a~d~~P~~~~ai~lNa~ 123 (218)
T COG3897 54 PPFWAFAWAGGQ----------VLARYIDDHPETVRGKRVLDLGAGSGLVAIAAARAGAAEVVAADIDPWLEQAIRLNAA 123 (218)
T ss_pred chHHHHHHhhhH----------HHHHHHhcCccccccceeeecccccChHHHHHHHhhhHHHHhcCCChHHHHHhhcchh
Confidence 447766665432 244444433 34568999999999999999999887 89999999998888888888
Q ss_pred cCCCCcceEEEEcccCCCCCCCCeeEEEecccccccChhHHHHHHHHHHhcccCCcEEEE
Q 024008 152 SLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELIT 211 (274)
Q Consensus 152 ~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~ 211 (274)
.+++ .+.|...|... .+..||++++..++..- +.-.+++. +...++..|..++
T Consensus 124 angv--~i~~~~~d~~g--~~~~~Dl~LagDlfy~~--~~a~~l~~-~~~~l~~~g~~vl 176 (218)
T COG3897 124 ANGV--SILFTHADLIG--SPPAFDLLLAGDLFYNH--TEADRLIP-WKDRLAEAGAAVL 176 (218)
T ss_pred hccc--eeEEeeccccC--CCcceeEEEeeceecCc--hHHHHHHH-HHHHHHhCCCEEE
Confidence 8874 48888888875 55679999999887653 34456666 5555555555444
No 226
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=98.42 E-value=8.5e-07 Score=74.26 Aligned_cols=104 Identities=20% Similarity=0.288 Sum_probs=66.1
Q ss_pred CCeEEEEcCCcchhH-HHhhC---CCCeEEEEeCChHHHHHHHHHhh-cCCCCcceEEEEcccCCCC-CCCCeeEEEecc
Q 024008 109 KGRALVPGCGTGYDV-VAMAS---PERYVVGLEISDIAIKKAEELSS-SLPNAKFVSFLKADFFTWC-PTELFDLIFDYT 182 (274)
Q Consensus 109 ~~~vLDiG~G~G~~~-~~l~~---~~~~v~~iD~s~~~~~~a~~~~~-~~~~~~~v~~~~~d~~~~~-~~~~fD~v~~~~ 182 (274)
+.+|+=||||.=-++ +.+++ .+..++++|+++++++.+++.+. ..+++.+++|+.+|..... .-..||+|+...
T Consensus 121 p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~dl~~~DvV~lAa 200 (276)
T PF03059_consen 121 PSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVTYDLKEYDVVFLAA 200 (276)
T ss_dssp --EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-GG----SEEEE-T
T ss_pred cceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhccccccccCCEEEEhh
Confidence 469999999975544 55554 46789999999999999999887 4556788999999997643 336899999766
Q ss_pred cccccChhHHHHHHHHHHhcccCCcEEEEEE
Q 024008 183 FFCAIEPEMRAAWAQKIKDFLKPDGELITLM 213 (274)
Q Consensus 183 ~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~ 213 (274)
... ++.+...+++.++.+.++||..+++-.
T Consensus 201 lVg-~~~e~K~~Il~~l~~~m~~ga~l~~Rs 230 (276)
T PF03059_consen 201 LVG-MDAEPKEEILEHLAKHMAPGARLVVRS 230 (276)
T ss_dssp T-S-----SHHHHHHHHHHHS-TTSEEEEEE
T ss_pred hcc-cccchHHHHHHHHHhhCCCCcEEEEec
Confidence 554 344456789999999999999888864
No 227
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=98.42 E-value=9.8e-07 Score=77.58 Aligned_cols=97 Identities=12% Similarity=0.017 Sum_probs=79.2
Q ss_pred CeEEEEcCCcchhHHHhhCC--CC-eEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCC--CCCeeEEEecccc
Q 024008 110 GRALVPGCGTGYDVVAMASP--ER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP--TELFDLIFDYTFF 184 (274)
Q Consensus 110 ~~vLDiG~G~G~~~~~l~~~--~~-~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~--~~~fD~v~~~~~~ 184 (274)
.+|||+.||+|..++.++.. |+ +|+++|+++.+++.+++|+..++.. ++++...|+..... ..+||+|+... +
T Consensus 46 ~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~~-~~~v~~~Da~~~l~~~~~~fDvIdlDP-f 123 (374)
T TIGR00308 46 INIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSVE-NIEVPNEDAANVLRYRNRKFHVIDIDP-F 123 (374)
T ss_pred CEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCCC-cEEEEchhHHHHHHHhCCCCCEEEeCC-C
Confidence 58999999999999998874 54 8999999999999999999887653 58899999887432 35799998654 4
Q ss_pred cccChhHHHHHHHHHHhcccCCcEEEEEE
Q 024008 185 CAIEPEMRAAWAQKIKDFLKPDGELITLM 213 (274)
Q Consensus 185 ~~~~~~~~~~~l~~l~~~L~~gG~l~~~~ 213 (274)
. .+ ..+++.+.+.+++||+++++.
T Consensus 124 G-s~----~~fld~al~~~~~~glL~vTa 147 (374)
T TIGR00308 124 G-TP----APFVDSAIQASAERGLLLVTA 147 (374)
T ss_pred C-Cc----HHHHHHHHHhcccCCEEEEEe
Confidence 3 21 357888999999999999874
No 228
>KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism]
Probab=98.38 E-value=1.4e-05 Score=66.98 Aligned_cols=145 Identities=22% Similarity=0.236 Sum_probs=95.0
Q ss_pred CCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHh---hcCC-------------------------------
Q 024008 109 KGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELS---SSLP------------------------------- 154 (274)
Q Consensus 109 ~~~vLDiG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~---~~~~------------------------------- 154 (274)
.-+||-.|||.|+++..|+..|..+-|=|+|--|+--..-.+ ...+
T Consensus 151 ki~iLvPGaGlGRLa~dla~~G~~~qGNEfSy~Mli~S~FiLN~~~~~nq~~IYPfIh~~sn~~~~dDQlrpi~~PD~~p 230 (369)
T KOG2798|consen 151 KIRILVPGAGLGRLAYDLACLGFKCQGNEFSYFMLICSSFILNYCKQENQFTIYPFIHQYSNSLSRDDQLRPISIPDIHP 230 (369)
T ss_pred CceEEecCCCchhHHHHHHHhcccccccHHHHHHHHHHHHHHHhhccCCcEEEEeeeeccccccccccccccccCccccc
Confidence 358999999999999999998887777777654442211111 1111
Q ss_pred -----CCcceEEEEcccCCCCC----CCCeeEEEecccccccChhHHHHHHHHHHhcccCCcEEEE-----EEccCCCCC
Q 024008 155 -----NAKFVSFLKADFFTWCP----TELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELIT-----LMFPISDHV 220 (274)
Q Consensus 155 -----~~~~v~~~~~d~~~~~~----~~~fD~v~~~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~-----~~~~~~~~~ 220 (274)
.........||+.+..+ .+.||+|+....+.-. .+.-.+++.+.++|+|||+++= ..|......
T Consensus 231 ~~~~~~~~~fsicaGDF~evy~~s~~~~~~d~VvTcfFIDTa--~NileYi~tI~~iLk~GGvWiNlGPLlYHF~d~~g~ 308 (369)
T KOG2798|consen 231 ASSNGNTGSFSICAGDFLEVYGTSSGAGSYDVVVTCFFIDTA--HNILEYIDTIYKILKPGGVWINLGPLLYHFEDTHGV 308 (369)
T ss_pred cccCCCCCCccccccceeEEecCcCCCCccceEEEEEEeech--HHHHHHHHHHHHhccCCcEEEeccceeeeccCCCCC
Confidence 11123335577766222 2469999987655433 4667899999999999999763 222221111
Q ss_pred C-CCCcccCHHHHHHHHhcCCCcEEEEeecccccCC
Q 024008 221 G-GPPYKVSVSDYEEVLQPMGFQAISIVDNKLAIGP 255 (274)
Q Consensus 221 ~-~~~~~~~~~~~~~~~~~~Gf~~~~~~~~~~~~~~ 255 (274)
. .....++.+++..+++..||++++-...+..+..
T Consensus 309 ~~~~siEls~edl~~v~~~~GF~~~ke~~Idt~Y~~ 344 (369)
T KOG2798|consen 309 ENEMSIELSLEDLKRVASHRGFEVEKERGIDTTYGT 344 (369)
T ss_pred cccccccccHHHHHHHHHhcCcEEEEeeeeecccCC
Confidence 1 1233478999999999999999888866655554
No 229
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=98.36 E-value=1.5e-05 Score=63.73 Aligned_cols=123 Identities=13% Similarity=0.016 Sum_probs=95.0
Q ss_pred CCeEEEEcCCcchhHHHhhCCC--CeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC-CCCCCCeeEEEeccccc
Q 024008 109 KGRALVPGCGTGYDVVAMASPE--RYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT-WCPTELFDLIFDYTFFC 185 (274)
Q Consensus 109 ~~~vLDiG~G~G~~~~~l~~~~--~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~~~~~fD~v~~~~~~~ 185 (274)
+.++.||||-.+++..++.+.+ -.+++.|+++..+..|.+++...++.++++...+|... ..+...+|+|+..++=.
T Consensus 17 ~~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~~l~~~i~vr~~dgl~~l~~~d~~d~ivIAGMGG 96 (226)
T COG2384 17 GARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKNNLSERIDVRLGDGLAVLELEDEIDVIVIAGMGG 96 (226)
T ss_pred CCceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhcCCcceEEEeccCCccccCccCCcCEEEEeCCcH
Confidence 3459999999999999999844 48999999999999999999999999999999999987 44455899998554433
Q ss_pred ccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcEEEEe
Q 024008 186 AIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAISIV 247 (274)
Q Consensus 186 ~~~~~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gf~~~~~~ 247 (274)
.....++++-.+.|+.=-++++.- . ....++++++...+|+++.-.
T Consensus 97 ----~lI~~ILee~~~~l~~~~rlILQP--n----------~~~~~LR~~L~~~~~~I~~E~ 142 (226)
T COG2384 97 ----TLIREILEEGKEKLKGVERLILQP--N----------IHTYELREWLSANSYEIKAET 142 (226)
T ss_pred ----HHHHHHHHHhhhhhcCcceEEECC--C----------CCHHHHHHHHHhCCceeeeee
Confidence 455667777777776433444421 1 157889999999999876543
No 230
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=98.34 E-value=1.8e-05 Score=69.51 Aligned_cols=133 Identities=21% Similarity=0.217 Sum_probs=96.1
Q ss_pred CCCCCeEEEEcCCcchhHHHhhC----CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC---CCCC-CCeeE
Q 024008 106 ALPKGRALVPGCGTGYDVVAMAS----PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT---WCPT-ELFDL 177 (274)
Q Consensus 106 ~~~~~~vLDiG~G~G~~~~~l~~----~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~---~~~~-~~fD~ 177 (274)
..++.+|||+.++.|.=+..++. .+..|+++|.++..+...++++...|..+ +.....|... ..+. ++||.
T Consensus 154 p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~n-v~~~~~d~~~~~~~~~~~~~fD~ 232 (355)
T COG0144 154 PKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVRN-VIVVNKDARRLAELLPGGEKFDR 232 (355)
T ss_pred CCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCCc-eEEEecccccccccccccCcCcE
Confidence 56678999999999988877776 35678999999999999999999998754 7777777654 2222 35999
Q ss_pred EEeccccccc-------------ChhH-------HHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHh
Q 024008 178 IFDYTFFCAI-------------EPEM-------RAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQ 237 (274)
Q Consensus 178 v~~~~~~~~~-------------~~~~-------~~~~l~~l~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (274)
|+.-...... .+.+ -..++....+.|||||.|+.++.+.... -..+.+..+++
T Consensus 233 iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYSTCS~~~e-------ENE~vV~~~L~ 305 (355)
T COG0144 233 ILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYSTCSLTPE-------ENEEVVERFLE 305 (355)
T ss_pred EEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEccCCchh-------cCHHHHHHHHH
Confidence 9975332211 1111 2578899999999999999888766422 13556666676
Q ss_pred cC-CCcEEEE
Q 024008 238 PM-GFQAISI 246 (274)
Q Consensus 238 ~~-Gf~~~~~ 246 (274)
+. +|+.+.+
T Consensus 306 ~~~~~~~~~~ 315 (355)
T COG0144 306 RHPDFELEPV 315 (355)
T ss_pred hCCCceeecc
Confidence 65 5666555
No 231
>KOG1331 consensus Predicted methyltransferase [General function prediction only]
Probab=98.34 E-value=9.8e-07 Score=73.01 Aligned_cols=114 Identities=18% Similarity=0.306 Sum_probs=90.1
Q ss_pred ccHHHHHHHhcCCCCCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC-CCCC
Q 024008 94 PAPIIVHLHQSGALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT-WCPT 172 (274)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~~~ 172 (274)
+-+...+++..... +..++|+|||-|..+.. .+...++|.|++...+..+++.- -.....+|+.+ +...
T Consensus 32 ~Wp~v~qfl~~~~~-gsv~~d~gCGngky~~~--~p~~~~ig~D~c~~l~~~ak~~~-------~~~~~~ad~l~~p~~~ 101 (293)
T KOG1331|consen 32 PWPMVRQFLDSQPT-GSVGLDVGCGNGKYLGV--NPLCLIIGCDLCTGLLGGAKRSG-------GDNVCRADALKLPFRE 101 (293)
T ss_pred ccHHHHHHHhccCC-cceeeecccCCcccCcC--CCcceeeecchhhhhccccccCC-------CceeehhhhhcCCCCC
Confidence 35567777775433 67999999999977632 26678999999998888776543 12678889888 6677
Q ss_pred CCeeEEEecccccccCh-hHHHHHHHHHHhcccCCcEEEEEEccCC
Q 024008 173 ELFDLIFDYTFFCAIEP-EMRAAWAQKIKDFLKPDGELITLMFPIS 217 (274)
Q Consensus 173 ~~fD~v~~~~~~~~~~~-~~~~~~l~~l~~~L~~gG~l~~~~~~~~ 217 (274)
..||.+++..++||+.. ..+..+++++.++++|||..++..++..
T Consensus 102 ~s~d~~lsiavihhlsT~~RR~~~l~e~~r~lrpgg~~lvyvwa~~ 147 (293)
T KOG1331|consen 102 ESFDAALSIAVIHHLSTRERRERALEELLRVLRPGGNALVYVWALE 147 (293)
T ss_pred CccccchhhhhhhhhhhHHHHHHHHHHHHHHhcCCCceEEEEehhh
Confidence 89999999999999864 4567899999999999999988887654
No 232
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=98.33 E-value=2e-06 Score=73.06 Aligned_cols=72 Identities=15% Similarity=0.115 Sum_probs=59.5
Q ss_pred CCCCeEEEEcCCcchhHHHhhCC---CCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCC---CCCC--CeeEE
Q 024008 107 LPKGRALVPGCGTGYDVVAMASP---ERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW---CPTE--LFDLI 178 (274)
Q Consensus 107 ~~~~~vLDiG~G~G~~~~~l~~~---~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~---~~~~--~fD~v 178 (274)
.++..++|++||.|..+..+++. ..+|+|+|.++.+++.|++++.. .+++.++.+|+.+. .+.+ ++|.|
T Consensus 18 ~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~---~~ri~~i~~~f~~l~~~l~~~~~~vDgI 94 (296)
T PRK00050 18 KPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKP---FGRFTLVHGNFSNLKEVLAEGLGKVDGI 94 (296)
T ss_pred CCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhcc---CCcEEEEeCCHHHHHHHHHcCCCccCEE
Confidence 45679999999999999999883 47999999999999999998755 26899999999872 2222 79999
Q ss_pred Eec
Q 024008 179 FDY 181 (274)
Q Consensus 179 ~~~ 181 (274)
++.
T Consensus 95 l~D 97 (296)
T PRK00050 95 LLD 97 (296)
T ss_pred EEC
Confidence 874
No 233
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=98.29 E-value=1.4e-06 Score=67.65 Aligned_cols=101 Identities=19% Similarity=0.129 Sum_probs=78.8
Q ss_pred CCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCeeEEEecccccccC
Q 024008 109 KGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFCAIE 188 (274)
Q Consensus 109 ~~~vLDiG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~~~~~~~ 188 (274)
.+.+.|+|+|+|.++...++..-+|++++.+|.....|.+|+...+. ++++++.+|+..... +..|+|+|-..=-.+-
T Consensus 33 ~d~~~DLGaGsGiLs~~Aa~~A~rViAiE~dPk~a~~a~eN~~v~g~-~n~evv~gDA~~y~f-e~ADvvicEmlDTaLi 110 (252)
T COG4076 33 EDTFADLGAGSGILSVVAAHAAERVIAIEKDPKRARLAEENLHVPGD-VNWEVVVGDARDYDF-ENADVVICEMLDTALI 110 (252)
T ss_pred hhceeeccCCcchHHHHHHhhhceEEEEecCcHHHHHhhhcCCCCCC-cceEEEecccccccc-cccceeHHHHhhHHhh
Confidence 47899999999999998888867999999999999999999866654 679999999987544 5679998743321111
Q ss_pred hhHHHHHHHHHHhcccCCcEEEE
Q 024008 189 PEMRAAWAQKIKDFLKPDGELIT 211 (274)
Q Consensus 189 ~~~~~~~l~~l~~~L~~gG~l~~ 211 (274)
.+....++..+.+.|+.++.++-
T Consensus 111 ~E~qVpV~n~vleFLr~d~tiiP 133 (252)
T COG4076 111 EEKQVPVINAVLEFLRYDPTIIP 133 (252)
T ss_pred cccccHHHHHHHHHhhcCCcccc
Confidence 12334677888888999988763
No 234
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=98.29 E-value=6.9e-06 Score=66.25 Aligned_cols=114 Identities=22% Similarity=0.213 Sum_probs=68.7
Q ss_pred cHHHHHHHhcCCC-CCCeEEEEcCCcchhHHHhhC-CCC-eEEEEeCChHHHHHHHHHhh-------cCCC-CcceEEEE
Q 024008 95 APIIVHLHQSGAL-PKGRALVPGCGTGYDVVAMAS-PER-YVVGLEISDIAIKKAEELSS-------SLPN-AKFVSFLK 163 (274)
Q Consensus 95 ~~~~~~~~~~~~~-~~~~vLDiG~G~G~~~~~l~~-~~~-~v~~iD~s~~~~~~a~~~~~-------~~~~-~~~v~~~~ 163 (274)
...+..+++.... ++...+|+|||.|....+.+. .++ +.+|||+.+...+.|+.... ..+. ..++++..
T Consensus 28 ~~~~~~il~~~~l~~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~ 107 (205)
T PF08123_consen 28 PEFVSKILDELNLTPDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELIH 107 (205)
T ss_dssp HHHHHHHHHHTT--TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEEC
T ss_pred HHHHHHHHHHhCCCCCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceeec
Confidence 3445566665544 457999999999999887766 455 69999999998888765332 2222 35688899
Q ss_pred cccCCCCC----CCCeeEEEecccccccChhHHHHHHHHHHhcccCCcEEEE
Q 024008 164 ADFFTWCP----TELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELIT 211 (274)
Q Consensus 164 ~d~~~~~~----~~~fD~v~~~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~ 211 (274)
+|+.+... -...|+|++++.. ++++. ...+.++...||+|.+++.
T Consensus 108 gdfl~~~~~~~~~s~AdvVf~Nn~~--F~~~l-~~~L~~~~~~lk~G~~IIs 156 (205)
T PF08123_consen 108 GDFLDPDFVKDIWSDADVVFVNNTC--FDPDL-NLALAELLLELKPGARIIS 156 (205)
T ss_dssp S-TTTHHHHHHHGHC-SEEEE--TT--T-HHH-HHHHHHHHTTS-TT-EEEE
T ss_pred cCccccHhHhhhhcCCCEEEEeccc--cCHHH-HHHHHHHHhcCCCCCEEEE
Confidence 99876211 1357999998763 34343 4455777788999988765
No 235
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=98.29 E-value=1.4e-05 Score=74.05 Aligned_cols=78 Identities=18% Similarity=0.309 Sum_probs=57.1
Q ss_pred CCeEEEEcCCcchhHHHhhC--C--------CCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC----C--CCC
Q 024008 109 KGRALVPGCGTGYDVVAMAS--P--------ERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT----W--CPT 172 (274)
Q Consensus 109 ~~~vLDiG~G~G~~~~~l~~--~--------~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~----~--~~~ 172 (274)
..+|||.|||+|.++..++. . ...++|+|+++.++..++.++...+. ..+.+...|... . ...
T Consensus 32 ~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~~-~~~~i~~~d~l~~~~~~~~~~~ 110 (524)
T TIGR02987 32 KTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFAL-LEINVINFNSLSYVLLNIESYL 110 (524)
T ss_pred ceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcCC-CCceeeeccccccccccccccc
Confidence 45899999999999987765 1 14799999999999999998765531 234555555432 1 112
Q ss_pred CCeeEEEeccccccc
Q 024008 173 ELFDLIFDYTFFCAI 187 (274)
Q Consensus 173 ~~fD~v~~~~~~~~~ 187 (274)
++||+|+++.++..+
T Consensus 111 ~~fD~IIgNPPy~~~ 125 (524)
T TIGR02987 111 DLFDIVITNPPYGRL 125 (524)
T ss_pred CcccEEEeCCCcccc
Confidence 579999999988753
No 236
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=98.28 E-value=3.2e-06 Score=67.15 Aligned_cols=117 Identities=21% Similarity=0.268 Sum_probs=74.4
Q ss_pred CCeEEEEcCCcchhHHHhhCCC---CeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC---------CCC--CCC
Q 024008 109 KGRALVPGCGTGYDVVAMASPE---RYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT---------WCP--TEL 174 (274)
Q Consensus 109 ~~~vLDiG~G~G~~~~~l~~~~---~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~---------~~~--~~~ 174 (274)
+.+|||+||++|.++..+.+.+ .+|+|+|+.+. ... ..+.++.+|+.+ ... .++
T Consensus 24 ~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~---------~~~---~~~~~i~~d~~~~~~~~~i~~~~~~~~~~ 91 (181)
T PF01728_consen 24 GFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPM---------DPL---QNVSFIQGDITNPENIKDIRKLLPESGEK 91 (181)
T ss_dssp TEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSST---------GS----TTEEBTTGGGEEEEHSHHGGGSHGTTTCS
T ss_pred ccEEEEcCCcccceeeeeeecccccceEEEEecccc---------ccc---cceeeeecccchhhHHHhhhhhccccccC
Confidence 4799999999999999999976 69999999876 110 235556666553 111 268
Q ss_pred eeEEEeccccccc-----Ch----hHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcEEE
Q 024008 175 FDLIFDYTFFCAI-----EP----EMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAIS 245 (274)
Q Consensus 175 fD~v~~~~~~~~~-----~~----~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gf~~~~ 245 (274)
||+|++-...... +. ......+.-+.+.|+|||.+++-.+.... . .++...++. .|+.+.
T Consensus 92 ~dlv~~D~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~~~~~~---------~-~~~~~~l~~-~F~~v~ 160 (181)
T PF01728_consen 92 FDLVLSDMAPNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIKVFKGPE---------I-EELIYLLKR-CFSKVK 160 (181)
T ss_dssp ESEEEE-------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEEESSSTT---------S-HHHHHHHHH-HHHHEE
T ss_pred cceeccccccCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEEeccCcc---------H-HHHHHHHHh-CCeEEE
Confidence 9999987633221 11 22234455666779999998887765321 2 367676766 677766
Q ss_pred Eee
Q 024008 246 IVD 248 (274)
Q Consensus 246 ~~~ 248 (274)
+..
T Consensus 161 ~~K 163 (181)
T PF01728_consen 161 IVK 163 (181)
T ss_dssp EEE
T ss_pred EEE
Confidence 665
No 237
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=98.24 E-value=2.9e-05 Score=59.36 Aligned_cols=102 Identities=25% Similarity=0.355 Sum_probs=70.5
Q ss_pred EEEEcCCcchhH--HHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC--CC-CC-CCeeEEEeccccc
Q 024008 112 ALVPGCGTGYDV--VAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT--WC-PT-ELFDLIFDYTFFC 185 (274)
Q Consensus 112 vLDiG~G~G~~~--~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~--~~-~~-~~fD~v~~~~~~~ 185 (274)
++|+|||+|... ..+...+..++++|+++.++..++..... .....+.+...|... .. .. ..||++......+
T Consensus 52 ~ld~~~g~g~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 130 (257)
T COG0500 52 VLDIGCGTGRLALLARLGGRGAYVVGVDLSPEMLALARARAEG-AGLGLVDFVVADALGGVLPFEDSASFDLVISLLVLH 130 (257)
T ss_pred eEEecCCcCHHHHHHHhCCCCceEEEEeCCHHHHHHHHhhhhh-cCCCceEEEEeccccCCCCCCCCCceeEEeeeeehh
Confidence 999999999965 33322335899999999999886555432 211116788888765 22 22 3799994444444
Q ss_pred ccChhHHHHHHHHHHhcccCCcEEEEEEccCC
Q 024008 186 AIEPEMRAAWAQKIKDFLKPDGELITLMFPIS 217 (274)
Q Consensus 186 ~~~~~~~~~~l~~l~~~L~~gG~l~~~~~~~~ 217 (274)
+.. ....+..+.+.++|+|.+++......
T Consensus 131 ~~~---~~~~~~~~~~~l~~~g~~~~~~~~~~ 159 (257)
T COG0500 131 LLP---PAKALRELLRVLKPGGRLVLSDLLRD 159 (257)
T ss_pred cCC---HHHHHHHHHHhcCCCcEEEEEeccCC
Confidence 443 56788999999999999988776543
No 238
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.23 E-value=3.6e-05 Score=61.43 Aligned_cols=129 Identities=16% Similarity=0.142 Sum_probs=87.4
Q ss_pred HHHHHHhcC--CCCCCeEEEEcCCcchhHHHhhC---CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCC--
Q 024008 97 IIVHLHQSG--ALPKGRALVPGCGTGYDVVAMAS---PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW-- 169 (274)
Q Consensus 97 ~~~~~~~~~--~~~~~~vLDiG~G~G~~~~~l~~---~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-- 169 (274)
.+.++.+.. ..++..|+|+|+-.|.++..+++ .+..|+++|+.|- ... +++.++++|++..
T Consensus 32 KL~el~~k~~i~~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~---------~~~---~~V~~iq~d~~~~~~ 99 (205)
T COG0293 32 KLLELNEKFKLFKPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPM---------KPI---PGVIFLQGDITDEDT 99 (205)
T ss_pred HHHHHHHhcCeecCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECccc---------ccC---CCceEEeeeccCccH
Confidence 344444433 34568999999999999998887 3345999999773 111 3599999999872
Q ss_pred -------CCCCCeeEEEecccc--------ccc-ChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHH
Q 024008 170 -------CPTELFDLIFDYTFF--------CAI-EPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYE 233 (274)
Q Consensus 170 -------~~~~~fD~v~~~~~~--------~~~-~~~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~ 233 (274)
....++|+|++-..- +|. .-.....+++-...+|+|||.+++-.|-.. ..+++.
T Consensus 100 ~~~l~~~l~~~~~DvV~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~K~fqg~----------~~~~~l 169 (205)
T COG0293 100 LEKLLEALGGAPVDVVLSDMAPNTSGNRSVDHARSMYLCELALEFALEVLKPGGSFVAKVFQGE----------DFEDLL 169 (205)
T ss_pred HHHHHHHcCCCCcceEEecCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCCCCeEEEEEEeCC----------CHHHHH
Confidence 233457999975443 111 112235666778889999999998776443 456666
Q ss_pred HHHhcCCCcEEEEee
Q 024008 234 EVLQPMGFQAISIVD 248 (274)
Q Consensus 234 ~~~~~~Gf~~~~~~~ 248 (274)
+.++. .|..+.+..
T Consensus 170 ~~~~~-~F~~v~~~K 183 (205)
T COG0293 170 KALRR-LFRKVKIFK 183 (205)
T ss_pred HHHHH-hhceeEEec
Confidence 66666 587777665
No 239
>KOG3201 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.21 E-value=2.5e-06 Score=64.56 Aligned_cols=134 Identities=17% Similarity=0.184 Sum_probs=93.7
Q ss_pred CCCeEEEEcCCcchh-HHHhhC--CCCeEEEEeCChHHHHHHHHHhhcCCCC--cceEEEEcccCC---CCCCCCeeEEE
Q 024008 108 PKGRALVPGCGTGYD-VVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNA--KFVSFLKADFFT---WCPTELFDLIF 179 (274)
Q Consensus 108 ~~~~vLDiG~G~G~~-~~~l~~--~~~~v~~iD~s~~~~~~a~~~~~~~~~~--~~v~~~~~d~~~---~~~~~~fD~v~ 179 (274)
.+.+|||+|.|--.+ ++.++. +...|...|-+.+.+...++..-.+..+ .++..+.-+... ....+.||+|+
T Consensus 29 rg~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n~~s~~tsc~vlrw~~~~aqsq~eq~tFDiIl 108 (201)
T KOG3201|consen 29 RGRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSNMASSLTSCCVLRWLIWGAQSQQEQHTFDIIL 108 (201)
T ss_pred hHHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhcccccccceehhhHHHHhhhHHHHhhCcccEEE
Confidence 357899999985444 444444 5679999999999998888776554211 233333333332 33456899999
Q ss_pred ecccccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcEEEEeecccc
Q 024008 180 DYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAISIVDNKLA 252 (274)
Q Consensus 180 ~~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gf~~~~~~~~~~~ 252 (274)
+...+-. ++....+++.+..+|+|.|..++.... ..-+.+.+.+.....||.++..+.+...
T Consensus 109 aADClFf--dE~h~sLvdtIk~lL~p~g~Al~fsPR---------Rg~sL~kF~de~~~~gf~v~l~enyde~ 170 (201)
T KOG3201|consen 109 AADCLFF--DEHHESLVDTIKSLLRPSGRALLFSPR---------RGQSLQKFLDEVGTVGFTVCLEENYDEA 170 (201)
T ss_pred eccchhH--HHHHHHHHHHHHHHhCcccceeEecCc---------ccchHHHHHHHHHhceeEEEecccHhHH
Confidence 9877552 356788999999999999996665421 2237889999999999998776665533
No 240
>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.
Probab=98.19 E-value=5.9e-06 Score=69.89 Aligned_cols=79 Identities=19% Similarity=0.176 Sum_probs=50.9
Q ss_pred CeEEEEcCCcchhHHHhhC--CCCeEEEEeCChHHHHHHHHHhhcC-CCCcceEEEEcc----cCC--CCCCCCeeEEEe
Q 024008 110 GRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSL-PNAKFVSFLKAD----FFT--WCPTELFDLIFD 180 (274)
Q Consensus 110 ~~vLDiG~G~G~~~~~l~~--~~~~v~~iD~s~~~~~~a~~~~~~~-~~~~~v~~~~~d----~~~--~~~~~~fD~v~~ 180 (274)
-++||||||....-..|.. .+++++|+|+++..++.|++++..+ ++..+|+++... ++. ..+.+.||+.+|
T Consensus 104 v~glDIGTGAscIYpLLg~~~~~W~fvaTdID~~sl~~A~~nv~~N~~L~~~I~l~~~~~~~~i~~~i~~~~e~~dftmC 183 (299)
T PF05971_consen 104 VRGLDIGTGASCIYPLLGAKLYGWSFVATDIDPKSLESARENVERNPNLESRIELRKQKNPDNIFDGIIQPNERFDFTMC 183 (299)
T ss_dssp -EEEEES-TTTTHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHHT-T-TTTEEEEE--ST-SSTTTSTT--S-EEEEEE
T ss_pred eEeecCCccHHHHHHHHhhhhcCCeEEEecCCHHHHHHHHHHHHhccccccceEEEEcCCccccchhhhcccceeeEEec
Confidence 5899999999877544443 6899999999999999999999998 888899997653 333 223468999999
Q ss_pred cccccccC
Q 024008 181 YTFFCAIE 188 (274)
Q Consensus 181 ~~~~~~~~ 188 (274)
+..|+.-.
T Consensus 184 NPPFy~s~ 191 (299)
T PF05971_consen 184 NPPFYSSQ 191 (299)
T ss_dssp -----SS-
T ss_pred CCccccCh
Confidence 99988754
No 241
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=98.17 E-value=2.2e-05 Score=69.84 Aligned_cols=107 Identities=15% Similarity=0.233 Sum_probs=87.3
Q ss_pred CCCC-eEEEEcCCcchhHHHhhCCCC-eEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC-CCCCCCeeEEEeccc
Q 024008 107 LPKG-RALVPGCGTGYDVVAMASPER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT-WCPTELFDLIFDYTF 183 (274)
Q Consensus 107 ~~~~-~vLDiG~G~G~~~~~l~~~~~-~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~~~~~fD~v~~~~~ 183 (274)
.+.. ++|-+|||-..++..+.+.|. .|+.+|+|+-+++......... ..-..+...|... .+++++||+|+..+.
T Consensus 46 ~p~~~~~l~lGCGNS~l~e~ly~~G~~dI~~iD~S~V~V~~m~~~~~~~--~~~~~~~~~d~~~l~fedESFdiVIdkGt 123 (482)
T KOG2352|consen 46 SPSDFKILQLGCGNSELSEHLYKNGFEDITNIDSSSVVVAAMQVRNAKE--RPEMQMVEMDMDQLVFEDESFDIVIDKGT 123 (482)
T ss_pred chhhceeEeecCCCCHHHHHHHhcCCCCceeccccHHHHHHHHhccccC--CcceEEEEecchhccCCCcceeEEEecCc
Confidence 3344 999999999999999999887 7999999999998887766422 1457899999988 678899999999999
Q ss_pred ccccChh--------HHHHHHHHHHhcccCCcEEEEEEcc
Q 024008 184 FCAIEPE--------MRAAWAQKIKDFLKPDGELITLMFP 215 (274)
Q Consensus 184 ~~~~~~~--------~~~~~l~~l~~~L~~gG~l~~~~~~ 215 (274)
++++..+ .....+..+++++++||+.+.+.+.
T Consensus 124 lDal~~de~a~~~~~~v~~~~~eVsrvl~~~gk~~svtl~ 163 (482)
T KOG2352|consen 124 LDALFEDEDALLNTAHVSNMLDEVSRVLAPGGKYISVTLV 163 (482)
T ss_pred cccccCCchhhhhhHHhhHHHhhHHHHhccCCEEEEEEee
Confidence 9886322 2356789999999999998887764
No 242
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=98.16 E-value=1.5e-05 Score=67.20 Aligned_cols=99 Identities=17% Similarity=0.168 Sum_probs=72.0
Q ss_pred HHHHhcCC-CCCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCC----
Q 024008 99 VHLHQSGA-LPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTE---- 173 (274)
Q Consensus 99 ~~~~~~~~-~~~~~vLDiG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~---- 173 (274)
..+++... .++..|||+|+|.|.++..|++.+.+++++|+++..++..++..... ++++++.+|+.......
T Consensus 20 ~~Iv~~~~~~~~~~VlEiGpG~G~lT~~L~~~~~~v~~vE~d~~~~~~L~~~~~~~---~~~~vi~~D~l~~~~~~~~~~ 96 (262)
T PF00398_consen 20 DKIVDALDLSEGDTVLEIGPGPGALTRELLKRGKRVIAVEIDPDLAKHLKERFASN---PNVEVINGDFLKWDLYDLLKN 96 (262)
T ss_dssp HHHHHHHTCGTTSEEEEESSTTSCCHHHHHHHSSEEEEEESSHHHHHHHHHHCTTC---SSEEEEES-TTTSCGGGHCSS
T ss_pred HHHHHhcCCCCCCEEEEeCCCCccchhhHhcccCcceeecCcHhHHHHHHHHhhhc---ccceeeecchhccccHHhhcC
Confidence 33444333 35689999999999999999998899999999999999999987633 67999999999854333
Q ss_pred CeeEEEecccccccChhHHHHHHHHHHhcccC
Q 024008 174 LFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKP 205 (274)
Q Consensus 174 ~fD~v~~~~~~~~~~~~~~~~~l~~l~~~L~~ 205 (274)
....|+++..+ ++. ..++.++...-+.
T Consensus 97 ~~~~vv~NlPy-~is----~~il~~ll~~~~~ 123 (262)
T PF00398_consen 97 QPLLVVGNLPY-NIS----SPILRKLLELYRF 123 (262)
T ss_dssp SEEEEEEEETG-TGH----HHHHHHHHHHGGG
T ss_pred CceEEEEEecc-cch----HHHHHHHhhcccc
Confidence 56677777665 343 3345555553333
No 243
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=98.15 E-value=3.6e-05 Score=61.90 Aligned_cols=136 Identities=22% Similarity=0.284 Sum_probs=88.5
Q ss_pred CCCCeEEEEcCCcchhHHHhhC---CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCC----CCCCeeEEE
Q 024008 107 LPKGRALVPGCGTGYDVVAMAS---PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC----PTELFDLIF 179 (274)
Q Consensus 107 ~~~~~vLDiG~G~G~~~~~l~~---~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~----~~~~fD~v~ 179 (274)
.++.+||-+|+.+|.....++. +...|+++|+++......-..+... +|+--+..|+..+. .-+.+|+|+
T Consensus 72 k~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R---~NIiPIl~DAr~P~~Y~~lv~~VDvI~ 148 (229)
T PF01269_consen 72 KPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKR---PNIIPILEDARHPEKYRMLVEMVDVIF 148 (229)
T ss_dssp -TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHS---TTEEEEES-TTSGGGGTTTS--EEEEE
T ss_pred CCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhccC---CceeeeeccCCChHHhhcccccccEEE
Confidence 4568999999999999877776 5679999999996665555444433 46877889988632 235899999
Q ss_pred ecccccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcEEEEeecc
Q 024008 180 DYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAISIVDNK 250 (274)
Q Consensus 180 ~~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gf~~~~~~~~~ 250 (274)
+--. .+++..-++......||+||.+++..-...-.....+-..-. +-.+.+++.||+..+....+
T Consensus 149 ~DVa----Qp~Qa~I~~~Na~~fLk~gG~~~i~iKa~siD~t~~p~~vf~-~e~~~L~~~~~~~~e~i~Le 214 (229)
T PF01269_consen 149 QDVA----QPDQARIAALNARHFLKPGGHLIISIKARSIDSTADPEEVFA-EEVKKLKEEGFKPLEQITLE 214 (229)
T ss_dssp EE-S----STTHHHHHHHHHHHHEEEEEEEEEEEEHHHH-SSSSHHHHHH-HHHHHHHCTTCEEEEEEE-T
T ss_pred ecCC----ChHHHHHHHHHHHhhccCCcEEEEEEecCcccCcCCHHHHHH-HHHHHHHHcCCChheEeccC
Confidence 5322 235667788899999999999998764322211111211112 33455677799998776643
No 244
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=98.14 E-value=1.2e-05 Score=68.87 Aligned_cols=86 Identities=19% Similarity=0.167 Sum_probs=64.5
Q ss_pred CCCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCC-CCCeeEEEeccccc
Q 024008 107 LPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP-TELFDLIFDYTFFC 185 (274)
Q Consensus 107 ~~~~~vLDiG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~-~~~fD~v~~~~~~~ 185 (274)
.++.++||+||++|.++..+++.|++|++||..+- - ..+.. .++|+....|.+...+ .+.+|+++|-.+..
T Consensus 210 ~~g~~vlDLGAsPGGWT~~L~~rG~~V~AVD~g~l-~----~~L~~---~~~V~h~~~d~fr~~p~~~~vDwvVcDmve~ 281 (357)
T PRK11760 210 APGMRAVDLGAAPGGWTYQLVRRGMFVTAVDNGPM-A----QSLMD---TGQVEHLRADGFKFRPPRKNVDWLVCDMVEK 281 (357)
T ss_pred CCCCEEEEeCCCCcHHHHHHHHcCCEEEEEechhc-C----HhhhC---CCCEEEEeccCcccCCCCCCCCEEEEecccC
Confidence 45689999999999999999999999999996542 1 11222 2579999999988655 67899999765522
Q ss_pred ccChhHHHHHHHHHHhcccCC
Q 024008 186 AIEPEMRAAWAQKIKDFLKPD 206 (274)
Q Consensus 186 ~~~~~~~~~~l~~l~~~L~~g 206 (274)
...+.+.+.+++..|
T Consensus 282 ------P~rva~lm~~Wl~~g 296 (357)
T PRK11760 282 ------PARVAELMAQWLVNG 296 (357)
T ss_pred ------HHHHHHHHHHHHhcC
Confidence 235667777777665
No 245
>COG4798 Predicted methyltransferase [General function prediction only]
Probab=98.13 E-value=1.7e-05 Score=62.01 Aligned_cols=143 Identities=12% Similarity=0.074 Sum_probs=93.9
Q ss_pred CCCCCeEEEEcCCcchhHHHhhC-CC--CeEEEEeCChHHH----HHHHHH-hhcCCCCcceEEEEcccCCCCCCCCeeE
Q 024008 106 ALPKGRALVPGCGTGYDVVAMAS-PE--RYVVGLEISDIAI----KKAEEL-SSSLPNAKFVSFLKADFFTWCPTELFDL 177 (274)
Q Consensus 106 ~~~~~~vLDiG~G~G~~~~~l~~-~~--~~v~~iD~s~~~~----~~a~~~-~~~~~~~~~v~~~~~d~~~~~~~~~fD~ 177 (274)
..++.+|+|+=.|.|.++..++. .+ ..|+++=..+... +..+.+ +.......|++.+..+.....+..+.|+
T Consensus 46 lkpg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e~~~aN~e~~~~~~~A~~~pq~~d~ 125 (238)
T COG4798 46 LKPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAAREPVYANVEVIGKPLVALGAPQKLDL 125 (238)
T ss_pred cCCCCEEEEEecCCccHhhhhchhcCCceeEEEecchhhcccccchhhhhhhhhhhhhhhhhhhhCCcccccCCCCcccc
Confidence 45678999999999999998887 22 2666654332211 101111 1111112356666677766557777888
Q ss_pred EEeccccccc-----ChhHHHHHHHHHHhcccCCcEEEEEEccCCCC----CCCCCcccCHHHHHHHHhcCCCcEEEEee
Q 024008 178 IFDYTFFCAI-----EPEMRAAWAQKIKDFLKPDGELITLMFPISDH----VGGPPYKVSVSDYEEVLQPMGFQAISIVD 248 (274)
Q Consensus 178 v~~~~~~~~~-----~~~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~Gf~~~~~~~ 248 (274)
++.....+.+ ++.....+...+++.|||||.+++.++..... .......++...+++..+.+||++.--.+
T Consensus 126 ~~~~~~yhdmh~k~i~~~~A~~vna~vf~~LKPGGv~~V~dH~a~pG~~~~dt~~~~ri~~a~V~a~veaaGFkl~aeS~ 205 (238)
T COG4798 126 VPTAQNYHDMHNKNIHPATAAKVNAAVFKALKPGGVYLVEDHRADPGSGLSDTITLHRIDPAVVIAEVEAAGFKLEAESE 205 (238)
T ss_pred cccchhhhhhhccccCcchHHHHHHHHHHhcCCCcEEEEEeccccCCCChhhhhhhcccChHHHHHHHHhhcceeeeeeh
Confidence 8876555544 33556788899999999999999988755432 12223456889999999999998765444
No 246
>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]
Probab=98.11 E-value=5.6e-07 Score=70.81 Aligned_cols=149 Identities=18% Similarity=0.164 Sum_probs=94.0
Q ss_pred cHHHHHHHhcC----CCCCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCC
Q 024008 95 APIIVHLHQSG----ALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC 170 (274)
Q Consensus 95 ~~~~~~~~~~~----~~~~~~vLDiG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~ 170 (274)
......++... ...+.++||+|+|.|..+..++..--+|++.|.|..|....+..--. +-..+++.+.|
T Consensus 95 e~QF~klL~i~~p~w~~~~~~lLDlGAGdGeit~~m~p~feevyATElS~tMr~rL~kk~yn--Vl~~~ew~~t~----- 167 (288)
T KOG3987|consen 95 EEQFRKLLVIGGPAWGQEPVTLLDLGAGDGEITLRMAPTFEEVYATELSWTMRDRLKKKNYN--VLTEIEWLQTD----- 167 (288)
T ss_pred HHHHHHHHhcCCCccCCCCeeEEeccCCCcchhhhhcchHHHHHHHHhhHHHHHHHhhcCCc--eeeehhhhhcC-----
Confidence 34455555433 22347999999999999987766444799999999998887654311 00112222222
Q ss_pred CCCCeeEEEecccccccChhHHHHHHHHHHhcccC-CcEEEEEE---------ccCCCCCC---------CCCcccCHHH
Q 024008 171 PTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKP-DGELITLM---------FPISDHVG---------GPPYKVSVSD 231 (274)
Q Consensus 171 ~~~~fD~v~~~~~~~~~~~~~~~~~l~~l~~~L~~-gG~l~~~~---------~~~~~~~~---------~~~~~~~~~~ 231 (274)
-+||+|.|.+++.... +.-++++.++.+|+| +|++++.. +++..... |..+.-....
T Consensus 168 --~k~dli~clNlLDRc~--~p~kLL~Di~~vl~psngrvivaLVLP~~hYVE~N~~g~~~rPdn~Le~~Gr~~ee~v~~ 243 (288)
T KOG3987|consen 168 --VKLDLILCLNLLDRCF--DPFKLLEDIHLVLAPSNGRVIVALVLPYMHYVETNTSGLPLRPDNLLENNGRSFEEEVAR 243 (288)
T ss_pred --ceeehHHHHHHHHhhc--ChHHHHHHHHHHhccCCCcEEEEEEecccceeecCCCCCcCCchHHHHhcCccHHHHHHH
Confidence 3699999998887653 335788999999999 78876532 11111111 1122223456
Q ss_pred HHHHHhcCCCcEEEEeecccccC
Q 024008 232 YEEVLQPMGFQAISIVDNKLAIG 254 (274)
Q Consensus 232 ~~~~~~~~Gf~~~~~~~~~~~~~ 254 (274)
+.++++.+||.+......+.-..
T Consensus 244 ~~e~lr~~g~~veawTrlPYLCE 266 (288)
T KOG3987|consen 244 FMELLRNCGYRVEAWTRLPYLCE 266 (288)
T ss_pred HHHHHHhcCchhhhhhcCCeecc
Confidence 67889999998766655444333
No 247
>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]
Probab=98.10 E-value=3.4e-05 Score=61.34 Aligned_cols=115 Identities=21% Similarity=0.240 Sum_probs=84.0
Q ss_pred cHHHHHHHhcCCCCCCeEEEEcCCcchhHHHhhC-CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC---CC
Q 024008 95 APIIVHLHQSGALPKGRALVPGCGTGYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT---WC 170 (274)
Q Consensus 95 ~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~-~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~---~~ 170 (274)
.+.+.++.+....++++||++|-|-|.....+.+ +..+=+.||..|+++...+....... ++|-+..+-..+ ..
T Consensus 88 tpiMha~A~ai~tkggrvLnVGFGMgIidT~iQe~~p~~H~IiE~hp~V~krmr~~gw~ek--~nViil~g~WeDvl~~L 165 (271)
T KOG1709|consen 88 TPIMHALAEAISTKGGRVLNVGFGMGIIDTFIQEAPPDEHWIIEAHPDVLKRMRDWGWREK--ENVIILEGRWEDVLNTL 165 (271)
T ss_pred hHHHHHHHHHHhhCCceEEEeccchHHHHHHHhhcCCcceEEEecCHHHHHHHHhcccccc--cceEEEecchHhhhccc
Confidence 3445555544456789999999999999888877 33466678999999999988765543 678888876555 56
Q ss_pred CCCCeeEEEecccccccChhHHHHHHHHHHhcccCCcEEEEEE
Q 024008 171 PTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLM 213 (274)
Q Consensus 171 ~~~~fD~v~~~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~ 213 (274)
+++.||-|+-- ++.-.. ++...+.+.+.++|||+|++-...
T Consensus 166 ~d~~FDGI~yD-Ty~e~y-Edl~~~hqh~~rLLkP~gv~SyfN 206 (271)
T KOG1709|consen 166 PDKHFDGIYYD-TYSELY-EDLRHFHQHVVRLLKPEGVFSYFN 206 (271)
T ss_pred cccCcceeEee-chhhHH-HHHHHHHHHHhhhcCCCceEEEec
Confidence 77889999842 221111 566788899999999999876544
No 248
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=98.07 E-value=0.00034 Score=57.11 Aligned_cols=152 Identities=14% Similarity=0.120 Sum_probs=87.8
Q ss_pred HhcCCCCCCeEEEEcCCcchh-HHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCC---CCeeE
Q 024008 102 HQSGALPKGRALVPGCGTGYD-VVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPT---ELFDL 177 (274)
Q Consensus 102 ~~~~~~~~~~vLDiG~G~G~~-~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~---~~fD~ 177 (274)
.+...+.+++||-+|=..-.. +..+.....+|+.+|+++..++..++...+.++. ++.+..|+..+.|. ++||+
T Consensus 38 ~~~gdL~gk~il~lGDDDLtSlA~al~~~~~~I~VvDiDeRll~fI~~~a~~~gl~--i~~~~~DlR~~LP~~~~~~fD~ 115 (243)
T PF01861_consen 38 AERGDLEGKRILFLGDDDLTSLALALTGLPKRITVVDIDERLLDFINRVAEEEGLP--IEAVHYDLRDPLPEELRGKFDV 115 (243)
T ss_dssp HHTT-STT-EEEEES-TT-HHHHHHHHT--SEEEEE-S-HHHHHHHHHHHHHHT----EEEE---TTS---TTTSS-BSE
T ss_pred HhcCcccCCEEEEEcCCcHHHHHHHhhCCCCeEEEEEcCHHHHHHHHHHHHHcCCc--eEEEEecccccCCHHHhcCCCE
Confidence 344457789999998554322 2233346679999999999999999999888764 99999999996654 79999
Q ss_pred EEecccccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcEEEEeecccccCCcc
Q 024008 178 IFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAISIVDNKLAIGPRK 257 (274)
Q Consensus 178 v~~~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gf~~~~~~~~~~~~~~~~ 257 (274)
+++..+.- .+-..-++.+....|+.-|-.....++.... ......++++.+.+.||.+..+...--.+.++.
T Consensus 116 f~TDPPyT---~~G~~LFlsRgi~~Lk~~g~~gy~~~~~~~~-----s~~~~~~~Q~~l~~~gl~i~dii~~Fn~Y~ga~ 187 (243)
T PF01861_consen 116 FFTDPPYT---PEGLKLFLSRGIEALKGEGCAGYFGFTHKEA-----SPDKWLEVQRFLLEMGLVITDIIPDFNRYEGAE 187 (243)
T ss_dssp EEE---SS---HHHHHHHHHHHHHTB-STT-EEEEEE-TTT-------HHHHHHHHHHHHTS--EEEEEEEEEEEB---S
T ss_pred EEeCCCCC---HHHHHHHHHHHHHHhCCCCceEEEEEecCcC-----cHHHHHHHHHHHHHCCcCHHHHHhhhcccccch
Confidence 99876643 2566788999999998877433333333211 011235789999999999999988777777655
Q ss_pred chhHHH
Q 024008 258 GREKLG 263 (274)
Q Consensus 258 ~~~~~~ 263 (274)
.-+...
T Consensus 188 ~i~~~~ 193 (243)
T PF01861_consen 188 IIGNTR 193 (243)
T ss_dssp -GGGSH
T ss_pred hhcccc
Confidence 444333
No 249
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=98.05 E-value=3.1e-05 Score=63.44 Aligned_cols=147 Identities=16% Similarity=0.156 Sum_probs=90.1
Q ss_pred HHHHHHHhcC---CCCCCeEEEEcCCcchhHHHhhC--CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCC
Q 024008 96 PIIVHLHQSG---ALPKGRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC 170 (274)
Q Consensus 96 ~~~~~~~~~~---~~~~~~vLDiG~G~G~~~~~l~~--~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~ 170 (274)
+.+..+.... ..++.+|+|||||.--++..+.. ++..++|+|+++.+++.........+ ...++...|.....
T Consensus 90 ~~Ld~fY~~if~~~~~p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~~~l~~l~--~~~~~~v~Dl~~~~ 167 (251)
T PF07091_consen 90 PNLDEFYDEIFGRIPPPDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLNAFLAVLG--VPHDARVRDLLSDP 167 (251)
T ss_dssp GGHHHHHHHHCCCS---SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHHHHHHHTT---CEEEEEE-TTTSH
T ss_pred hhHHHHHHHHHhcCCCCchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHHHHHHhhC--CCcceeEeeeeccC
Confidence 3345544433 22368999999999988886665 56799999999999999998877766 35778888998877
Q ss_pred CCCCeeEEEecccccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCC--CCcccCHHHHHHHHhcCCCcEEEEe
Q 024008 171 PTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGG--PPYKVSVSDYEEVLQPMGFQAISIV 247 (274)
Q Consensus 171 ~~~~fD~v~~~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~Gf~~~~~~ 247 (274)
+....|+.+..=+++.++.......+ ++.+.+ +...+++.|+.....+. .+...-..++.+++...||.+.+..
T Consensus 168 ~~~~~DlaLllK~lp~le~q~~g~g~-~ll~~~--~~~~~vVSfPtrSL~gR~~gm~~~y~~~fe~~~~~~~~~~~~~~ 243 (251)
T PF07091_consen 168 PKEPADLALLLKTLPCLERQRRGAGL-ELLDAL--RSPHVVVSFPTRSLGGRNKGMEQTYSAWFEALAAERGWIVDRLT 243 (251)
T ss_dssp TTSEESEEEEET-HHHHHHHSTTHHH-HHHHHS--CESEEEEEEES-------TTHHHCHHHHHHHHCCTTCEEEEEEE
T ss_pred CCCCcchhhHHHHHHHHHHHhcchHH-HHHHHh--CCCeEEEeccccccccCccccccCHHHHHHHhcccCCceeeeee
Confidence 77889999987776665322221222 222222 34455556655433221 1222346778888888888855443
No 250
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=98.04 E-value=2.7e-06 Score=61.34 Aligned_cols=97 Identities=21% Similarity=0.149 Sum_probs=42.7
Q ss_pred EEEcCCcchhHHHhhC---CC--CeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCC---CCCCCeeEEEecccc
Q 024008 113 LVPGCGTGYDVVAMAS---PE--RYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW---CPTELFDLIFDYTFF 184 (274)
Q Consensus 113 LDiG~G~G~~~~~l~~---~~--~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~---~~~~~fD~v~~~~~~ 184 (274)
||+|+..|..+..+++ .. .+++++|..+. .+.+++..+..+...+++++.++..+. .+..++|+++.-..-
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~-~~~~~~~~~~~~~~~~~~~~~g~s~~~l~~~~~~~~dli~iDg~H 79 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPG-DEQAQEIIKKAGLSDRVEFIQGDSPDFLPSLPDGPIDLIFIDGDH 79 (106)
T ss_dssp --------------------------EEEESS-------------GGG-BTEEEEES-THHHHHHHHH--EEEEEEES--
T ss_pred CccccccccccccccccccccccCCEEEEECCCc-ccccchhhhhcCCCCeEEEEEcCcHHHHHHcCCCCEEEEEECCCC
Confidence 6999999999988876 23 37999999985 333444444444556899999998762 224789999954321
Q ss_pred cccChhHHHHHHHHHHhcccCCcEEEEEE
Q 024008 185 CAIEPEMRAAWAQKIKDFLKPDGELITLM 213 (274)
Q Consensus 185 ~~~~~~~~~~~l~~l~~~L~~gG~l~~~~ 213 (274)
..+.....+..+.+.|+|||++++-+
T Consensus 80 ---~~~~~~~dl~~~~~~l~~ggviv~dD 105 (106)
T PF13578_consen 80 ---SYEAVLRDLENALPRLAPGGVIVFDD 105 (106)
T ss_dssp ----HHHHHHHHHHHGGGEEEEEEEEEE-
T ss_pred ---CHHHHHHHHHHHHHHcCCCeEEEEeC
Confidence 11345567889999999999988743
No 251
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.00 E-value=0.00017 Score=56.94 Aligned_cols=135 Identities=20% Similarity=0.230 Sum_probs=93.1
Q ss_pred CCCCeEEEEcCCcchhHHHhhC--CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCC----CCCCeeEEEe
Q 024008 107 LPKGRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC----PTELFDLIFD 180 (274)
Q Consensus 107 ~~~~~vLDiG~G~G~~~~~l~~--~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~----~~~~fD~v~~ 180 (274)
.++.+||-+|+.+|.....++. ....++++|+++......-..+... +|+--+.+|+..+. .-+..|+|+.
T Consensus 75 ~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl~~a~~R---~Ni~PIL~DA~~P~~Y~~~Ve~VDviy~ 151 (231)
T COG1889 75 KEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELLDVAEKR---PNIIPILEDARKPEKYRHLVEKVDVIYQ 151 (231)
T ss_pred CCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHHHHHHhC---CCceeeecccCCcHHhhhhcccccEEEE
Confidence 4568999999999999888877 3458999999998877766665544 46777888887633 2356899984
Q ss_pred cccccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcEEEEeec
Q 024008 181 YTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAISIVDN 249 (274)
Q Consensus 181 ~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gf~~~~~~~~ 249 (274)
-- ..+++..-+...+...|++||.+++..-...-..+..+-..-.+++. .+++.||+++++...
T Consensus 152 DV----AQp~Qa~I~~~Na~~FLk~~G~~~i~iKArSIdvT~dp~~vf~~ev~-kL~~~~f~i~e~~~L 215 (231)
T COG1889 152 DV----AQPNQAEILADNAEFFLKKGGYVVIAIKARSIDVTADPEEVFKDEVE-KLEEGGFEILEVVDL 215 (231)
T ss_pred ec----CCchHHHHHHHHHHHhcccCCeEEEEEEeecccccCCHHHHHHHHHH-HHHhcCceeeEEecc
Confidence 21 23456677888999999999987776544433333333333344444 455568998877664
No 252
>KOG4058 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.98 E-value=6.4e-05 Score=56.16 Aligned_cols=119 Identities=18% Similarity=0.213 Sum_probs=89.5
Q ss_pred CccHHHHHHHhcC-CCCCCeEEEEcCCcchhHHHhhCCC-CeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCC
Q 024008 93 QPAPIIVHLHQSG-ALPKGRALVPGCGTGYDVVAMASPE-RYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC 170 (274)
Q Consensus 93 ~~~~~~~~~~~~~-~~~~~~vLDiG~G~G~~~~~l~~~~-~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~ 170 (274)
...+.++..+..+ ..+.++.+|+|+|.|....+.++.| ...+|+|++|-.+..++-+.-..+...+..|..-|+.+..
T Consensus 56 AtteQv~nVLSll~~n~~GklvDlGSGDGRiVlaaar~g~~~a~GvELNpwLVaysrl~a~R~g~~k~trf~RkdlwK~d 135 (199)
T KOG4058|consen 56 ATTEQVENVLSLLRGNPKGKLVDLGSGDGRIVLAAARCGLRPAVGVELNPWLVAYSRLHAWRAGCAKSTRFRRKDLWKVD 135 (199)
T ss_pred ccHHHHHHHHHHccCCCCCcEEeccCCCceeehhhhhhCCCcCCceeccHHHHHHHHHHHHHHhcccchhhhhhhhhhcc
Confidence 3455566666555 3445899999999999999999888 4899999999999999998888888888999999998844
Q ss_pred CCCCeeEEEecccccccChhHHHHHHHHHHhcccCCcEEEEEEccCC
Q 024008 171 PTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPIS 217 (274)
Q Consensus 171 ~~~~fD~v~~~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~~~~ 217 (274)
. +.|..|+...+ +..+..+..++..-+..+..++..-|+..
T Consensus 136 l-~dy~~vviFga-----es~m~dLe~KL~~E~p~nt~vvacRFPLP 176 (199)
T KOG4058|consen 136 L-RDYRNVVIFGA-----ESVMPDLEDKLRTELPANTRVVACRFPLP 176 (199)
T ss_pred c-cccceEEEeeh-----HHHHhhhHHHHHhhCcCCCeEEEEecCCC
Confidence 3 23444443332 23445566788888888999988877653
No 253
>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine. Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.
Probab=97.93 E-value=0.00025 Score=61.76 Aligned_cols=163 Identities=13% Similarity=0.135 Sum_probs=93.5
Q ss_pred CCeEEEEcCCcchhHHHhhC------------CC------CeEEEEeCChHHHHHHHHHhhcC------CCCcceEEEEc
Q 024008 109 KGRALVPGCGTGYDVVAMAS------------PE------RYVVGLEISDIAIKKAEELSSSL------PNAKFVSFLKA 164 (274)
Q Consensus 109 ~~~vLDiG~G~G~~~~~l~~------------~~------~~v~~iD~s~~~~~~a~~~~~~~------~~~~~v~~~~~ 164 (274)
.-+|+|+||.+|.+++.+.. .+ .+|+--|+-..-....-+.++.. ...--+.-+.+
T Consensus 17 ~~~iaD~GcS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~e~~v~~nDlP~NDFn~lF~~l~~~~~~~~~~~~~f~~gvpg 96 (334)
T PF03492_consen 17 PFRIADLGCSSGPNSLLAVSNIIDAIRERCRSSNNQPPPEFQVFFNDLPSNDFNTLFKSLPSFQQSLKKFRNYFVSGVPG 96 (334)
T ss_dssp EEEEEEES--SSHHHHHHHHHHHHHHHHHHHCTT-SS--EEEEEEEE-TTS-HHHHHHCHHHHHHHHHHTTSEEEEEEES
T ss_pred ceEEEecCCCCCccHHHHHHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCccHHHHHHhChhhhhccCCCceEEEEecCc
Confidence 36999999999999876553 12 47888897544333332222221 00011334567
Q ss_pred ccCC-CCCCCCeeEEEecccccccCh------h-------------------------------HHHHHHHHHHhcccCC
Q 024008 165 DFFT-WCPTELFDLIFDYTFFCAIEP------E-------------------------------MRAAWAQKIKDFLKPD 206 (274)
Q Consensus 165 d~~~-~~~~~~fD~v~~~~~~~~~~~------~-------------------------------~~~~~l~~l~~~L~~g 206 (274)
.+.. .+|.++.|++++..++|+++. + ++..+++.=.+-|+||
T Consensus 97 SFy~rLfP~~Svh~~~Ss~alHWLS~vP~~l~~~~~~~~Nkg~i~~~~~~~~~v~~ay~~Qf~~D~~~FL~~Ra~ELv~G 176 (334)
T PF03492_consen 97 SFYGRLFPSNSVHFGHSSYALHWLSQVPEELVDKSSPAWNKGNIYISRTSPPEVAKAYAKQFQKDFSSFLKARAEELVPG 176 (334)
T ss_dssp -TTS--S-TT-EEEEEEES-TTB-SSS-CCCCTTTSTTTSTTTSSSSTTS-HHHHHHHHHHHHHHHHHHHHHHHHHEEEE
T ss_pred hhhhccCCCCceEEEEEechhhhcccCCcccccccccccccCcEEEecCCCHHHHHHHHHHHHHHHHHHHHHhhheeccC
Confidence 7776 889999999999999988631 0 1234555556678999
Q ss_pred cEEEEEEccCCCCCC----------------------------------CCCcccCHHHHHHHHhcCC-CcEEEEeeccc
Q 024008 207 GELITLMFPISDHVG----------------------------------GPPYKVSVSDYEEVLQPMG-FQAISIVDNKL 251 (274)
Q Consensus 207 G~l~~~~~~~~~~~~----------------------------------~~~~~~~~~~~~~~~~~~G-f~~~~~~~~~~ 251 (274)
|++++...+...... -|.|..+.+|+.+.++..| |++..++....
T Consensus 177 G~mvl~~~gr~~~~~~~~~~~~~~~~l~~~l~dMv~eGlI~~ek~dsfniP~Y~ps~eEv~~~I~~~gsF~I~~le~~~~ 256 (334)
T PF03492_consen 177 GRMVLTFLGRDEEDPSSTGSCMLWDLLADALRDMVAEGLISEEKVDSFNIPIYFPSPEEVRAIIEEEGSFEIEKLELFEQ 256 (334)
T ss_dssp EEEEEEEEE-STSSTTSTTCCCHHHHHHHHHHHHHHTTSS-HCCCCTG--SBB---HHHHHHHHHHHTSEEEEEEEEEEE
T ss_pred cEEEEEEeeccccccccCCcchHHHHHHHHHHHHHHcCCcCHHHhhceeCCccCCCHHHHHHHHhcCCCEEEEEEEEEee
Confidence 999998876654200 1234468999999999988 88877776553
Q ss_pred ccCC-----------ccchhHHHHhhhhhcc
Q 024008 252 AIGP-----------RKGREKLGRWKRSVRH 271 (274)
Q Consensus 252 ~~~~-----------~~~~~~~~~~~~~~~~ 271 (274)
.... ....+.+..+.|+...
T Consensus 257 ~~~~~~~~~~~~~d~~~~~~~~~~~iRA~~e 287 (334)
T PF03492_consen 257 PWWSVPDDESWKEDAKEYARNVANYIRAVFE 287 (334)
T ss_dssp ETCCTCTTT-STTTHHCHHHHHHHHHHHHHH
T ss_pred cccccchhhhcccchhhhHHHHHHhHHHHHH
Confidence 2211 1245566677776543
No 254
>PLN02668 indole-3-acetate carboxyl methyltransferase
Probab=97.92 E-value=0.00031 Score=61.80 Aligned_cols=164 Identities=16% Similarity=0.182 Sum_probs=101.5
Q ss_pred CCeEEEEcCCcchhHHHhhC-----------------CCCeEEEEeCChHHHHHHHHHhhcCC------------CCcc-
Q 024008 109 KGRALVPGCGTGYDVVAMAS-----------------PERYVVGLEISDIAIKKAEELSSSLP------------NAKF- 158 (274)
Q Consensus 109 ~~~vLDiG~G~G~~~~~l~~-----------------~~~~v~~iD~s~~~~~~a~~~~~~~~------------~~~~- 158 (274)
..+|+|+|||+|.+++.+.. +..++..-|+...-.+..-+.++... ...+
T Consensus 64 ~~~iaDlGcs~G~ntl~~vs~iI~~i~~~~~~~~~~~pe~qv~~nDLP~NDFNtlF~~L~~~~~~~~~~~~~~~~~~~~~ 143 (386)
T PLN02668 64 PFTAVDLGCSSGSNTIHIIDVIVKHMSKRYESAGLDPPEFSAFFSDLPSNDFNTLFQLLPPLANYGGSMEECLAASGHRS 143 (386)
T ss_pred ceeEEEecCCCCccHHHHHHHHHHHHHHHhhhcCCCCCcceEEecCCCCCCHHHHHhhchhhhhhhcchhhhccccCCCc
Confidence 46899999999988755432 23577777775444433333332100 0011
Q ss_pred --eEEEEcccCC-CCCCCCeeEEEecccccccCh--h----------------------------------HHHHHHHHH
Q 024008 159 --VSFLKADFFT-WCPTELFDLIFDYTFFCAIEP--E----------------------------------MRAAWAQKI 199 (274)
Q Consensus 159 --v~~~~~d~~~-~~~~~~fD~v~~~~~~~~~~~--~----------------------------------~~~~~l~~l 199 (274)
+.-+.+.+.. .+|.++.|++++...+|+++. + ++..+++.=
T Consensus 144 ~f~~gvpGSFY~RLfP~~Slh~~~Ss~slHWLS~vP~~l~d~~s~~~Nkg~iyi~~~s~~v~~aY~~Qf~~D~~~FL~~R 223 (386)
T PLN02668 144 YFAAGVPGSFYRRLFPARSIDVFHSAFSLHWLSQVPESVTDKRSAAYNKGRVFIHGASESTANAYKRQFQADLAGFLRAR 223 (386)
T ss_pred eEEEecCccccccccCCCceEEEEeeccceecccCchhhccCCcccccCCceEecCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 1223355655 788999999999999998742 1 123455555
Q ss_pred HhcccCCcEEEEEEccCCCC--C----------------------------------CCCCcccCHHHHHHHHhcCC-Cc
Q 024008 200 KDFLKPDGELITLMFPISDH--V----------------------------------GGPPYKVSVSDYEEVLQPMG-FQ 242 (274)
Q Consensus 200 ~~~L~~gG~l~~~~~~~~~~--~----------------------------------~~~~~~~~~~~~~~~~~~~G-f~ 242 (274)
.+-|.|||.+++...+.... . .-|.|..+.+|+.+.++..| |.
T Consensus 224 a~ELvpGG~mvl~~~Gr~~~~~~~~~~~~~~~~~~l~~al~dlv~eGlI~eek~dsFniP~Y~ps~eEv~~~Ie~~gsF~ 303 (386)
T PLN02668 224 AQEMKRGGAMFLVCLGRTSVDPTDQGGAGLLFGTHFQDAWDDLVQEGLVTSEKRDSFNIPVYAPSLQDFKEVVEANGSFA 303 (386)
T ss_pred HHHhccCcEEEEEEecCCCCCcccCCchhHHHHHHHHHHHHHHHHcCCCCHHHHhcccCcccCCCHHHHHHHHhhcCCEE
Confidence 66789999999987665311 0 01234469999999999998 87
Q ss_pred EEEEeecccccCCcc----c----hhHHHHhhhhhccc
Q 024008 243 AISIVDNKLAIGPRK----G----REKLGRWKRSVRHS 272 (274)
Q Consensus 243 ~~~~~~~~~~~~~~~----~----~~~~~~~~~~~~~~ 272 (274)
+..++..+....... + -..++.+.|+...+
T Consensus 304 I~~le~~~~~~~~~~~~~~d~~~~g~~~a~~~RA~~E~ 341 (386)
T PLN02668 304 IDKLEVFKGGSPLVVNEPDDAAEVGRAMANSCRSVAGV 341 (386)
T ss_pred eeeeEEeeccCcccccCcccHHHHHHHHHHHHHHHHHH
Confidence 777776443211100 1 23467788877654
No 255
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=97.90 E-value=8.4e-05 Score=55.72 Aligned_cols=112 Identities=16% Similarity=0.151 Sum_probs=72.9
Q ss_pred eEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC---CCCCCCeeEEEecccccccCh---------hHHHHHHHHH
Q 024008 132 YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT---WCPTELFDLIFDYTFFCAIEP---------EMRAAWAQKI 199 (274)
Q Consensus 132 ~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~---~~~~~~fD~v~~~~~~~~~~~---------~~~~~~l~~l 199 (274)
+|+|+|+-+++++..++++...++.++++++..+-.. ..+.+++|+++.+ +.++|. +..-..++.+
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~~~~~~v~li~~sHe~l~~~i~~~~v~~~iFN--LGYLPggDk~i~T~~~TTl~Al~~a 78 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEAGLEDRVTLILDSHENLDEYIPEGPVDAAIFN--LGYLPGGDKSITTKPETTLKALEAA 78 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTT-GSGEEEEES-GGGGGGT--S--EEEEEEE--ESB-CTS-TTSB--HHHHHHHHHHH
T ss_pred CEEEEECHHHHHHHHHHHHHhcCCCCcEEEEECCHHHHHhhCccCCcCEEEEE--CCcCCCCCCCCCcCcHHHHHHHHHH
Confidence 6899999999999999999999887889999987665 2333589999965 444443 2345778999
Q ss_pred HhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHh---cCCCcEEEEeecc
Q 024008 200 KDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQ---PMGFQAISIVDNK 250 (274)
Q Consensus 200 ~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~Gf~~~~~~~~~ 250 (274)
.++|+|||++.++.+..-.... -..+.+.++++ ...|.+.......
T Consensus 79 l~lL~~gG~i~iv~Y~GH~gG~-----eE~~av~~~~~~L~~~~~~V~~~~~~N 127 (140)
T PF06962_consen 79 LELLKPGGIITIVVYPGHPGGK-----EESEAVEEFLASLDQKEFNVLKYQFIN 127 (140)
T ss_dssp HHHEEEEEEEEEEE--STCHHH-----HHHHHHHHHHHTS-TTTEEEEEEEESS
T ss_pred HHhhccCCEEEEEEeCCCCCCH-----HHHHHHHHHHHhCCcceEEEEEEEccC
Confidence 9999999999999876432100 12333444444 4567776665543
No 256
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=97.85 E-value=5.3e-05 Score=57.54 Aligned_cols=57 Identities=21% Similarity=0.062 Sum_probs=48.1
Q ss_pred eEEEEcCCcchhHHHhhCC--CCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC
Q 024008 111 RALVPGCGTGYDVVAMASP--ERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT 168 (274)
Q Consensus 111 ~vLDiG~G~G~~~~~l~~~--~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~ 168 (274)
.++|+|||.|..+..+++. +.+++++|+++.+++.++++...++.. ++.++...+.+
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~~~~~n~~~-~v~~~~~al~~ 59 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEENVKLNNLP-NVVLLNAAVGD 59 (143)
T ss_pred CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHHHHHHcCCC-cEEEEEeeeeC
Confidence 4899999999999998874 447999999999999999998877653 58888877764
No 257
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=97.84 E-value=0.00016 Score=61.53 Aligned_cols=133 Identities=21% Similarity=0.252 Sum_probs=95.0
Q ss_pred CCCCCeEEEEcCCcchhHHHhhC---CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCC---CCCCCeeEEE
Q 024008 106 ALPKGRALVPGCGTGYDVVAMAS---PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW---CPTELFDLIF 179 (274)
Q Consensus 106 ~~~~~~vLDiG~G~G~~~~~l~~---~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~---~~~~~fD~v~ 179 (274)
..++.+|||+.++.|.=+..++. ....+++.|+++..+...+.+....|.. ++.....|.... .....||.|+
T Consensus 83 ~~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~-~v~~~~~D~~~~~~~~~~~~fd~Vl 161 (283)
T PF01189_consen 83 PQPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGVF-NVIVINADARKLDPKKPESKFDRVL 161 (283)
T ss_dssp TTTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-S-SEEEEESHHHHHHHHHHTTTEEEEE
T ss_pred ccccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCCc-eEEEEeeccccccccccccccchhh
Confidence 56678999999999999888877 3469999999999999999999988764 577777777663 2334699999
Q ss_pred eccccccc-----ChhH---------------HHHHHHHHHhcc----cCCcEEEEEEccCCCCCCCCCcccCHHHHHHH
Q 024008 180 DYTFFCAI-----EPEM---------------RAAWAQKIKDFL----KPDGELITLMFPISDHVGGPPYKVSVSDYEEV 235 (274)
Q Consensus 180 ~~~~~~~~-----~~~~---------------~~~~l~~l~~~L----~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (274)
.-...... .++. -..+++...+.+ +|||+++....+.... -..+.+...
T Consensus 162 vDaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsTCS~~~e-------ENE~vV~~f 234 (283)
T PF01189_consen 162 VDAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYSTCSLSPE-------ENEEVVEKF 234 (283)
T ss_dssp EECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEESHHHGG-------GTHHHHHHH
T ss_pred cCCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEeccHHHH-------HHHHHHHHH
Confidence 74332111 1111 157889999999 9999999888655322 145566667
Q ss_pred HhcC-CCcEEEE
Q 024008 236 LQPM-GFQAISI 246 (274)
Q Consensus 236 ~~~~-Gf~~~~~ 246 (274)
++.+ .|+++.+
T Consensus 235 l~~~~~~~l~~~ 246 (283)
T PF01189_consen 235 LKRHPDFELVPI 246 (283)
T ss_dssp HHHSTSEEEECC
T ss_pred HHhCCCcEEEec
Confidence 7775 4555443
No 258
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=97.74 E-value=0.00011 Score=65.66 Aligned_cols=105 Identities=20% Similarity=0.174 Sum_probs=74.2
Q ss_pred CCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCC---C---CCeeEEEec
Q 024008 108 PKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP---T---ELFDLIFDY 181 (274)
Q Consensus 108 ~~~~vLDiG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~---~---~~fD~v~~~ 181 (274)
.+..+||+-||||..+..+++.-.+|+|||+++++++.|+.++..++.+ |.+|+++-..+..+ . ..-++|...
T Consensus 383 ~~k~llDv~CGTG~iglala~~~~~ViGvEi~~~aV~dA~~nA~~Ngis-Na~Fi~gqaE~~~~sl~~~~~~~~~~v~ii 461 (534)
T KOG2187|consen 383 ADKTLLDVCCGTGTIGLALARGVKRVIGVEISPDAVEDAEKNAQINGIS-NATFIVGQAEDLFPSLLTPCCDSETLVAII 461 (534)
T ss_pred CCcEEEEEeecCCceehhhhccccceeeeecChhhcchhhhcchhcCcc-ceeeeecchhhccchhcccCCCCCceEEEE
Confidence 3468999999999999999999899999999999999999999999885 69999995544221 1 133433321
Q ss_pred ccccccChhHHHHHHHHHHhcccCCcEEEEEEccC
Q 024008 182 TFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPI 216 (274)
Q Consensus 182 ~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~~~ 216 (274)
..-. ...-..++..+.+.-.+--.+++++...
T Consensus 462 DPpR---~Glh~~~ik~l~~~~~~~rlvyvSCn~~ 493 (534)
T KOG2187|consen 462 DPPR---KGLHMKVIKALRAYKNPRRLVYVSCNPH 493 (534)
T ss_pred CCCc---ccccHHHHHHHHhccCccceEEEEcCHH
Confidence 1111 0111356666766666777787777443
No 259
>KOG3115 consensus Methyltransferase-like protein [General function prediction only]
Probab=97.66 E-value=0.00036 Score=55.11 Aligned_cols=103 Identities=20% Similarity=0.285 Sum_probs=65.8
Q ss_pred CeEEEEcCCcchhHHHhhC--CCCeEEEEeCChHHHHHHHHHhhcCC------CCcceEEEEcccCCCCCCCCeeEEEec
Q 024008 110 GRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLP------NAKFVSFLKADFFTWCPTELFDLIFDY 181 (274)
Q Consensus 110 ~~vLDiG~G~G~~~~~l~~--~~~~v~~iD~s~~~~~~a~~~~~~~~------~~~~v~~~~~d~~~~~~~~~fD~v~~~ 181 (274)
-.+.|||||-|.+++.|+. +..-+.|.|+--.+.+..++++.... .-.++.....+.....|. -|.--...
T Consensus 62 vefaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~ni~vlr~namk~lpn-~f~kgqLs 140 (249)
T KOG3115|consen 62 VEFADIGCGYGGLLMKLAPKFPDTLILGMEIRDKVSDYVKERIQALRRTSAEGQYPNISVLRTNAMKFLPN-FFEKGQLS 140 (249)
T ss_pred ceEEeeccCccchhhhccccCccceeeeehhhHHHHHHHHHHHHHHhccccccccccceeeeccchhhccc-hhhhcccc
Confidence 4689999999999999988 66689999988777777776654432 224566676666653321 11111111
Q ss_pred ccccccChhHH-----------HHHHHHHHhcccCCcEEEEEE
Q 024008 182 TFFCAIEPEMR-----------AAWAQKIKDFLKPDGELITLM 213 (274)
Q Consensus 182 ~~~~~~~~~~~-----------~~~l~~l~~~L~~gG~l~~~~ 213 (274)
-.+..++++.. ..++.+..-+|++||.++...
T Consensus 141 kmff~fpdpHfk~~khk~rii~~~l~~eyay~l~~gg~~ytit 183 (249)
T KOG3115|consen 141 KMFFLFPDPHFKARKHKWRIITSTLLSEYAYVLREGGILYTIT 183 (249)
T ss_pred cceeecCChhHhhhhccceeechhHHHHHHhhhhcCceEEEEe
Confidence 11111222221 457788889999999998865
No 260
>PRK10742 putative methyltransferase; Provisional
Probab=97.58 E-value=0.00029 Score=57.96 Aligned_cols=77 Identities=16% Similarity=0.054 Sum_probs=63.8
Q ss_pred eEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcC------C--CCcceEEEEcccCCCC--CCCCeeEEEe
Q 024008 111 RALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSL------P--NAKFVSFLKADFFTWC--PTELFDLIFD 180 (274)
Q Consensus 111 ~vLDiG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~------~--~~~~v~~~~~d~~~~~--~~~~fD~v~~ 180 (274)
+|||+-+|+|..++.++..|++|+++|-++......++++... + ...+++++.+|..... ....||+|+.
T Consensus 91 ~VLD~TAGlG~Da~~las~G~~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~da~~~L~~~~~~fDVVYl 170 (250)
T PRK10742 91 DVVDATAGLGRDAFVLASVGCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDITPRPQVVYL 170 (250)
T ss_pred EEEECCCCccHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeCcHHHHHhhCCCCCcEEEE
Confidence 8999999999999999999999999999999999988887763 1 1256889999988732 2347999998
Q ss_pred ccccccc
Q 024008 181 YTFFCAI 187 (274)
Q Consensus 181 ~~~~~~~ 187 (274)
-..|.+-
T Consensus 171 DPMfp~~ 177 (250)
T PRK10742 171 DPMFPHK 177 (250)
T ss_pred CCCCCCC
Confidence 8887763
No 261
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=97.56 E-value=0.0013 Score=55.29 Aligned_cols=73 Identities=19% Similarity=0.175 Sum_probs=58.7
Q ss_pred CCCCCeEEEEcCCcchhHHHhhCC---CCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCC------CCCCCee
Q 024008 106 ALPKGRALVPGCGTGYDVVAMASP---ERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW------CPTELFD 176 (274)
Q Consensus 106 ~~~~~~vLDiG~G~G~~~~~l~~~---~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~------~~~~~fD 176 (274)
..+++..+|.--|.|+.+..+++. ..+++|+|.++.+++.|++.....+ +++.++++++.+. ...+++|
T Consensus 21 ~~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~~--~r~~~v~~~F~~l~~~l~~~~i~~vD 98 (314)
T COG0275 21 PKPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEFD--GRVTLVHGNFANLAEALKELGIGKVD 98 (314)
T ss_pred cCCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhccC--CcEEEEeCcHHHHHHHHHhcCCCcee
Confidence 456689999999999999999883 3579999999999999999987754 6899999887651 1234677
Q ss_pred EEEe
Q 024008 177 LIFD 180 (274)
Q Consensus 177 ~v~~ 180 (274)
.|+.
T Consensus 99 GiL~ 102 (314)
T COG0275 99 GILL 102 (314)
T ss_pred EEEE
Confidence 7764
No 262
>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]
Probab=97.53 E-value=0.00017 Score=63.17 Aligned_cols=71 Identities=13% Similarity=0.036 Sum_probs=58.2
Q ss_pred CeEEEEcCCcchhHHHhhCCCC-eEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC--CCCCCCeeEEEe
Q 024008 110 GRALVPGCGTGYDVVAMASPER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT--WCPTELFDLIFD 180 (274)
Q Consensus 110 ~~vLDiG~G~G~~~~~l~~~~~-~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~--~~~~~~fD~v~~ 180 (274)
-.|||||+|||.+++..++.|+ .|+++|.-..+.+.|++....+|++++++++..--.+ ..+..+.|+++.
T Consensus 68 v~vLdigtGTGLLSmMAvragaD~vtA~EvfkPM~d~arkI~~kng~SdkI~vInkrStev~vg~~~RadI~v~ 141 (636)
T KOG1501|consen 68 VFVLDIGTGTGLLSMMAVRAGADSVTACEVFKPMVDLARKIMHKNGMSDKINVINKRSTEVKVGGSSRADIAVR 141 (636)
T ss_pred EEEEEccCCccHHHHHHHHhcCCeEEeehhhchHHHHHHHHHhcCCCccceeeeccccceeeecCcchhhhhhH
Confidence 3789999999999999988877 8999999999999999999999999999998765554 222234566553
No 263
>TIGR00027 mthyl_TIGR00027 methyltransferase, putative, TIGR00027 family. This model represents a set of probable methyltransferases, about 300 amino acids long, with essentially full length homology. Members share an N-terminal region described by Pfam model pfam02409. Included are a paralogous family of 12 proteins in Mycobacterium tuberculosis, plus close homologs in related species, a family of 8 in the archaeon Methanosarcina acetivorans, and small numbers of members in other species, including plants.
Probab=97.48 E-value=0.007 Score=50.88 Aligned_cols=136 Identities=15% Similarity=0.142 Sum_probs=94.1
Q ss_pred CeEEEEcCCcchhHHHhhCC-CCeEEEEeCChHHHHHHHHHhhcCCC--CcceEEEEcccCC-C--------CCCCCeeE
Q 024008 110 GRALVPGCGTGYDVVAMASP-ERYVVGLEISDIAIKKAEELSSSLPN--AKFVSFLKADFFT-W--------CPTELFDL 177 (274)
Q Consensus 110 ~~vLDiG~G~G~~~~~l~~~-~~~v~~iD~s~~~~~~a~~~~~~~~~--~~~v~~~~~d~~~-~--------~~~~~fD~ 177 (274)
..|+.+|||-=.-...+..+ +.+++=+|. |++++.-++.+...+. ..+..++..|+.. + ...+.--+
T Consensus 83 ~qvV~LGaGlDTr~~Rl~~~~~~~~~EvD~-P~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~~~w~~~L~~~gfd~~~ptl 161 (260)
T TIGR00027 83 RQVVILGAGLDTRAYRLPWPDGTRVFEVDQ-PAVLAFKEKVLAELGAEPPAHRRAVPVDLRQDWPAALAAAGFDPTAPTA 161 (260)
T ss_pred cEEEEeCCccccHHHhcCCCCCCeEEECCC-hHHHHHHHHHHHHcCCCCCCceEEeccCchhhHHHHHHhCCCCCCCCee
Confidence 57999999875555555433 345655554 5666666666654321 3578889999863 1 11234567
Q ss_pred EEecccccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCC------------------CCCCCcccCHHHHHHHHhcC
Q 024008 178 IFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDH------------------VGGPPYKVSVSDYEEVLQPM 239 (274)
Q Consensus 178 v~~~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~ 239 (274)
+++-+++.|++++....++..+.+...||+.+++-..+.... .....+.++..++.++|..+
T Consensus 162 ~i~EGvl~YL~~~~v~~ll~~i~~~~~~gs~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 241 (260)
T TIGR00027 162 WLWEGLLMYLTEEAVDALLAFIAELSAPGSRLAFDYVRPLDGEWRAGMRAPVYHAARGVDGSGLVFGIDRADVAEWLAER 241 (260)
T ss_pred eeecchhhcCCHHHHHHHHHHHHHhCCCCcEEEEEeccccchhHHHHHHHHHHHhhhcccccccccCCChhhHHHHHHHC
Confidence 888899999999999999999999988999888755433110 01123456889999999999
Q ss_pred CCcEEEE
Q 024008 240 GFQAISI 246 (274)
Q Consensus 240 Gf~~~~~ 246 (274)
||+....
T Consensus 242 Gw~~~~~ 248 (260)
T TIGR00027 242 GWRASEH 248 (260)
T ss_pred CCeeecC
Confidence 9998665
No 264
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=97.42 E-value=0.00099 Score=56.89 Aligned_cols=73 Identities=21% Similarity=0.179 Sum_probs=59.4
Q ss_pred CCCCeEEEEcCCcchhHHHhhC--CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCC------CCCCCeeEE
Q 024008 107 LPKGRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW------CPTELFDLI 178 (274)
Q Consensus 107 ~~~~~vLDiG~G~G~~~~~l~~--~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~------~~~~~fD~v 178 (274)
.+++.++|.=+|-|..+..+++ +..+|+|+|.++.+++.+++++... ..++.++.+++.+. ...+++|.|
T Consensus 19 ~~ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak~~L~~~--~~R~~~i~~nF~~l~~~l~~~~~~~vDgI 96 (305)
T TIGR00006 19 KPDGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAKERLSDF--EGRVVLIHDNFANFFEHLDELLVTKIDGI 96 (305)
T ss_pred CCCCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHhhc--CCcEEEEeCCHHHHHHHHHhcCCCcccEE
Confidence 4567999999999999999887 3479999999999999999987654 36899999998762 123568888
Q ss_pred Eec
Q 024008 179 FDY 181 (274)
Q Consensus 179 ~~~ 181 (274)
++.
T Consensus 97 l~D 99 (305)
T TIGR00006 97 LVD 99 (305)
T ss_pred EEe
Confidence 864
No 265
>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.37 E-value=0.00039 Score=59.40 Aligned_cols=110 Identities=17% Similarity=0.215 Sum_probs=69.3
Q ss_pred CCCCCeEEEEcCCcchhHHHhhC--CCC-eEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC----CCCCCCeeEE
Q 024008 106 ALPKGRALVPGCGTGYDVVAMAS--PER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT----WCPTELFDLI 178 (274)
Q Consensus 106 ~~~~~~vLDiG~G~G~~~~~l~~--~~~-~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~----~~~~~~fD~v 178 (274)
...+.+|||+|.|.|.-+.++-. +.. .++.++.|+..-+..-........ ....+...|+.. +.....|+++
T Consensus 111 dfapqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~tl~~nv~t-~~td~r~s~vt~dRl~lp~ad~ytl~ 189 (484)
T COG5459 111 DFAPQSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVGDTLAENVST-EKTDWRASDVTEDRLSLPAADLYTLA 189 (484)
T ss_pred CcCcchhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHHHHHHHhhccc-ccCCCCCCccchhccCCCccceeehh
Confidence 34567899999999988776655 333 677888888655444443322211 223333344432 3444567777
Q ss_pred Eeccccccc-ChhHHHHHHHHHHhcccCCcEEEEEEccC
Q 024008 179 FDYTFFCAI-EPEMRAAWAQKIKDFLKPDGELITLMFPI 216 (274)
Q Consensus 179 ~~~~~~~~~-~~~~~~~~l~~l~~~L~~gG~l~~~~~~~ 216 (274)
+..+-+-+. .+......++++..++.|||.+++++.+.
T Consensus 190 i~~~eLl~d~~ek~i~~~ie~lw~l~~~gg~lVivErGt 228 (484)
T COG5459 190 IVLDELLPDGNEKPIQVNIERLWNLLAPGGHLVIVERGT 228 (484)
T ss_pred hhhhhhccccCcchHHHHHHHHHHhccCCCeEEEEeCCC
Confidence 765433222 22344568999999999999999998654
No 266
>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2.1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.
Probab=97.34 E-value=0.00057 Score=60.40 Aligned_cols=100 Identities=18% Similarity=0.050 Sum_probs=74.8
Q ss_pred CCeEEEEcCCcchhHHHhhC--CC-CeEEEEeCChHHHHHHHHHhhcCCCCc-ceEEEEcccCCCC--CCCCeeEEEecc
Q 024008 109 KGRALVPGCGTGYDVVAMAS--PE-RYVVGLEISDIAIKKAEELSSSLPNAK-FVSFLKADFFTWC--PTELFDLIFDYT 182 (274)
Q Consensus 109 ~~~vLDiG~G~G~~~~~l~~--~~-~~v~~iD~s~~~~~~a~~~~~~~~~~~-~v~~~~~d~~~~~--~~~~fD~v~~~~ 182 (274)
+.+|||.=+|+|.=++..+. .+ .+|++-|+|+++++..++|+..+++.+ ++++...|+.... ....||+|=. .
T Consensus 50 ~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N~~~~~~~~v~~~DAn~ll~~~~~~fD~IDl-D 128 (377)
T PF02005_consen 50 PIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELNGLEDERIEVSNMDANVLLYSRQERFDVIDL-D 128 (377)
T ss_dssp -EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHCT-SGCCEEEEES-HHHHHCHSTT-EEEEEE--
T ss_pred CceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhccccCceEEEehhhHHHHhhhccccCCEEEe-C
Confidence 45899999999988876665 34 489999999999999999999998877 6888899988754 5788999972 1
Q ss_pred cccccChhHHHHHHHHHHhcccCCcEEEEEEc
Q 024008 183 FFCAIEPEMRAAWAQKIKDFLKPDGELITLMF 214 (274)
Q Consensus 183 ~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~ 214 (274)
.| .....+++...+.++.||.+.++.-
T Consensus 129 Pf-----GSp~pfldsA~~~v~~gGll~vTaT 155 (377)
T PF02005_consen 129 PF-----GSPAPFLDSALQAVKDGGLLCVTAT 155 (377)
T ss_dssp -S-----S--HHHHHHHHHHEEEEEEEEEEE-
T ss_pred CC-----CCccHhHHHHHHHhhcCCEEEEecc
Confidence 22 2335688999999999999998763
No 267
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=97.32 E-value=0.0031 Score=53.54 Aligned_cols=132 Identities=14% Similarity=0.021 Sum_probs=84.0
Q ss_pred eEEEEcCCcchhHHHhhCCCC-eEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCC---CCCeeEEEecccccc
Q 024008 111 RALVPGCGTGYDVVAMASPER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP---TELFDLIFDYTFFCA 186 (274)
Q Consensus 111 ~vLDiG~G~G~~~~~l~~~~~-~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~---~~~fD~v~~~~~~~~ 186 (274)
+++|+-||.|.....+...|+ .+.++|+++.+++..+.+.+.. ++.+|+.+... ...+|+++.......
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~G~~~v~a~e~~~~a~~~~~~N~~~~-------~~~~Di~~~~~~~~~~~~D~l~~gpPCq~ 74 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKAGFEIVAANEIDKSAAETYEANFPNK-------LIEGDITKIDEKDFIPDIDLLTGGFPCQP 74 (275)
T ss_pred cEEEEccCcchHHHHHHHcCCEEEEEEeCCHHHHHHHHHhCCCC-------CccCccccCchhhcCCCCCEEEeCCCChh
Confidence 689999999999999988888 5788999999999998887432 45667766332 357999999877654
Q ss_pred cCh--------hHHHHHHH---HHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcEEEEeeccccc
Q 024008 187 IEP--------EMRAAWAQ---KIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAISIVDNKLAI 253 (274)
Q Consensus 187 ~~~--------~~~~~~l~---~l~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gf~~~~~~~~~~~~ 253 (274)
++. +.+..++. ++.+.++|. +++.+........ ........+.+.|++.||.+....-....+
T Consensus 75 fS~ag~~~~~~d~r~~L~~~~~~~i~~~~P~--~~v~ENV~g~~~~--~~~~~~~~i~~~l~~~GY~~~~~~l~a~~~ 148 (275)
T cd00315 75 FSIAGKRKGFEDTRGTLFFEIIRILKEKKPK--YFLLENVKGLLTH--DNGNTLKVILNTLEELGYNVYWKLLNASDY 148 (275)
T ss_pred hhHHhhcCCCCCchHHHHHHHHHHHHhcCCC--EEEEEcCcchhcc--CchHHHHHHHHHHHhCCcEEEEEEEEHHHc
Confidence 422 11222232 333334444 4444433221110 111246788889999999876555444333
No 268
>COG4627 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.31 E-value=0.00021 Score=53.92 Aligned_cols=80 Identities=15% Similarity=0.149 Sum_probs=58.1
Q ss_pred CCCCCCeeEEEecccccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCC---------C--CCCCcc------cCHHH
Q 024008 169 WCPTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDH---------V--GGPPYK------VSVSD 231 (274)
Q Consensus 169 ~~~~~~fD~v~~~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~---------~--~~~~~~------~~~~~ 231 (274)
.+.+++.|+|++.++++|+..+....+++.+++.|+|||++-+........ . .++..+ .+-..
T Consensus 42 ~F~dns~d~iyaeHvlEHlt~~Eg~~alkechr~Lrp~G~LriAvPdl~f~~~~Y~~~vqvggpgpndhP~~r~v~t~r~ 121 (185)
T COG4627 42 MFEDNSVDAIYAEHVLEHLTYDEGTSALKECHRFLRPGGKLRIAVPDLKFLDWLYQHDVQVGGPGPNDHPLHRIVKTMRM 121 (185)
T ss_pred cCCCcchHHHHHHHHHHHHhHHHHHHHHHHHHHHhCcCcEEEEEcCCcchhHHHHhhhhhccCCCCCCCcHHHHHHHHHH
Confidence 566789999999999999988888899999999999999999877543211 1 122211 25566
Q ss_pred HHHHHhcCCCcEEEEee
Q 024008 232 YEEVLQPMGFQAISIVD 248 (274)
Q Consensus 232 ~~~~~~~~Gf~~~~~~~ 248 (274)
+...+.++||.+.-...
T Consensus 122 m~n~~m~~~~~~kl~e~ 138 (185)
T COG4627 122 MFNGFMDAGFVVKLLEY 138 (185)
T ss_pred HHHHHHhhhheehhhhH
Confidence 66777777877654443
No 269
>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]
Probab=97.27 E-value=0.0034 Score=49.07 Aligned_cols=119 Identities=18% Similarity=0.219 Sum_probs=77.1
Q ss_pred CCCCeEEEEcCCcchhHHHhhC---CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEc-ccCC---------CCCCC
Q 024008 107 LPKGRALVPGCGTGYDVVAMAS---PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKA-DFFT---------WCPTE 173 (274)
Q Consensus 107 ~~~~~vLDiG~G~G~~~~~l~~---~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~-d~~~---------~~~~~ 173 (274)
.++.+|||+||..|.++....+ +...|.|||+-.- .+..| ++++.+ |+.+ ..|..
T Consensus 68 ~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh~--------~p~~G----a~~i~~~dvtdp~~~~ki~e~lp~r 135 (232)
T KOG4589|consen 68 RPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLHI--------EPPEG----ATIIQGNDVTDPETYRKIFEALPNR 135 (232)
T ss_pred CCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeeec--------cCCCC----cccccccccCCHHHHHHHHHhCCCC
Confidence 4578999999999999987766 5568999998431 22222 556665 6665 24567
Q ss_pred CeeEEEecccccc-----cCh----hHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcEE
Q 024008 174 LFDLIFDYTFFCA-----IEP----EMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAI 244 (274)
Q Consensus 174 ~fD~v~~~~~~~~-----~~~----~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gf~~~ 244 (274)
+.|+|++-+.-.. .+. +....++.-....+.|+|.++.-.|... ...++...+++ -|+.+
T Consensus 136 ~VdvVlSDMapnaTGvr~~Dh~~~i~LC~s~l~~al~~~~p~g~fvcK~w~g~----------e~~~l~r~l~~-~f~~V 204 (232)
T KOG4589|consen 136 PVDVVLSDMAPNATGVRIRDHYRSIELCDSALLFALTLLIPNGSFVCKLWDGS----------EEALLQRRLQA-VFTNV 204 (232)
T ss_pred cccEEEeccCCCCcCcchhhHHHHHHHHHHHHHHhhhhcCCCcEEEEEEecCC----------chHHHHHHHHH-Hhhhc
Confidence 8999997654321 111 2223445555677799999998776553 34566666666 36655
Q ss_pred EEee
Q 024008 245 SIVD 248 (274)
Q Consensus 245 ~~~~ 248 (274)
+...
T Consensus 205 k~vK 208 (232)
T KOG4589|consen 205 KKVK 208 (232)
T ss_pred EeeC
Confidence 5443
No 270
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=97.26 E-value=0.0016 Score=52.16 Aligned_cols=139 Identities=18% Similarity=0.145 Sum_probs=69.9
Q ss_pred HHHHHhcCCCCCCeEEEEcCCcchhHHHhhC------CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCC-
Q 024008 98 IVHLHQSGALPKGRALVPGCGTGYDVVAMAS------PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC- 170 (274)
Q Consensus 98 ~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~------~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~- 170 (274)
+++++. ..++..|+|+|.-.|+.+.+++. ...+|+|+|++-...+. ......++.+++++++||..+..
T Consensus 24 ~qeli~--~~kPd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~--~a~e~hp~~~rI~~i~Gds~d~~~ 99 (206)
T PF04989_consen 24 YQELIW--ELKPDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNR--KAIESHPMSPRITFIQGDSIDPEI 99 (206)
T ss_dssp HHHHHH--HH--SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S---GGGG----TTEEEEES-SSSTHH
T ss_pred HHHHHH--HhCCCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhch--HHHhhccccCceEEEECCCCCHHH
Confidence 444554 35689999999999999987765 45699999996443322 22233344578999999987621
Q ss_pred --------CCCCeeEEEecccccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCC----CCCCCcc---cCHHHHHHH
Q 024008 171 --------PTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDH----VGGPPYK---VSVSDYEEV 235 (274)
Q Consensus 171 --------~~~~fD~v~~~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~----~~~~~~~---~~~~~~~~~ 235 (274)
......+|+.-.. |.. +..-..++....++++|+++++.+....+. ....++. .....+.++
T Consensus 100 ~~~v~~~~~~~~~vlVilDs~--H~~-~hvl~eL~~y~plv~~G~Y~IVeDt~~~~~~~~~~~~~~w~~g~~p~~av~~f 176 (206)
T PF04989_consen 100 VDQVRELASPPHPVLVILDSS--HTH-EHVLAELEAYAPLVSPGSYLIVEDTIIEDWPESWFPDRPWGPGNNPKTAVKEF 176 (206)
T ss_dssp HHTSGSS----SSEEEEESS-------SSHHHHHHHHHHT--TT-EEEETSHHHHHHHHS-------------HHHHHHH
T ss_pred HHHHHHhhccCCceEEEECCC--ccH-HHHHHHHHHhCccCCCCCEEEEEeccccccccccccccchhhhhHHHHHHHHH
Confidence 1123345553211 111 233456678999999999999865332211 0111111 246778888
Q ss_pred HhcCC-CcE
Q 024008 236 LQPMG-FQA 243 (274)
Q Consensus 236 ~~~~G-f~~ 243 (274)
+.++. |.+
T Consensus 177 L~~~~~f~i 185 (206)
T PF04989_consen 177 LAEHPDFEI 185 (206)
T ss_dssp HHTTTTEEE
T ss_pred HHHCCCcEe
Confidence 88876 443
No 271
>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes. This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.
Probab=97.22 E-value=0.0069 Score=48.51 Aligned_cols=118 Identities=16% Similarity=0.106 Sum_probs=71.0
Q ss_pred HHHHHHHhcCCC-CCCeEEEEcCCcchhHHHhhC--CC--CeEEEEeCChHHHHHHHHHhhcCC----------------
Q 024008 96 PIIVHLHQSGAL-PKGRALVPGCGTGYDVVAMAS--PE--RYVVGLEISDIAIKKAEELSSSLP---------------- 154 (274)
Q Consensus 96 ~~~~~~~~~~~~-~~~~vLDiG~G~G~~~~~l~~--~~--~~v~~iD~s~~~~~~a~~~~~~~~---------------- 154 (274)
+.+++.+..... .+-++.|..||.|+++-.+.- .. ..|++.|+++++++.|++|+....
T Consensus 38 Ei~qR~l~~l~~~~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL~LLt~eGL~~R~~eL~~~~e 117 (246)
T PF11599_consen 38 EIFQRALHYLEGKGPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNLSLLTPEGLEARREELRELYE 117 (246)
T ss_dssp HHHHHHHCTSSS-S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHHHCCSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhcCCCCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhhhhccHhHHHHHHHHHHHHHH
Confidence 344455444422 335999999999999865543 22 389999999999999988765432
Q ss_pred -------------------------CCcceEEEEcccCCC------CCCCCeeEEEeccccccc-------ChhHHHHHH
Q 024008 155 -------------------------NAKFVSFLKADFFTW------CPTELFDLIFDYTFFCAI-------EPEMRAAWA 196 (274)
Q Consensus 155 -------------------------~~~~v~~~~~d~~~~------~~~~~fD~v~~~~~~~~~-------~~~~~~~~l 196 (274)
-..-..+.+.|++++ ......|+|++--.+..+ +.+-...++
T Consensus 118 ~~~kps~~eAl~sA~RL~~~l~~~g~~~p~~~~~aDvf~~~~~~~~~~~~~~diViTDlPYG~~t~W~g~~~~~p~~~ml 197 (246)
T PF11599_consen 118 QYGKPSHAEALESADRLRERLAAEGGDEPHAIFRADVFDPSPLAVLDAGFTPDIVITDLPYGEMTSWQGEGSGGPVAQML 197 (246)
T ss_dssp HH--HHHHHHHHHHHHHHHHHHHTTSS--EEEEE--TT-HHHHHHHHTT---SEEEEE--CCCSSSTTS---HHHHHHHH
T ss_pred HcCCchHHHHHHHHHHHHHHHHhcCCCCchhheeecccCCchhhhhccCCCCCEEEecCCCcccccccCCCCCCcHHHHH
Confidence 111256788888872 223457999987666554 223457889
Q ss_pred HHHHhcccCCcEEEEEE
Q 024008 197 QKIKDFLKPDGELITLM 213 (274)
Q Consensus 197 ~~l~~~L~~gG~l~~~~ 213 (274)
..++.+|.++++++++.
T Consensus 198 ~~l~~vLp~~sVV~v~~ 214 (246)
T PF11599_consen 198 NSLAPVLPERSVVAVSD 214 (246)
T ss_dssp HHHHCCS-TT-EEEEEE
T ss_pred HHHHhhCCCCcEEEEec
Confidence 99999996666666654
No 272
>PHA01634 hypothetical protein
Probab=97.21 E-value=0.0032 Score=46.04 Aligned_cols=48 Identities=19% Similarity=0.196 Sum_probs=43.2
Q ss_pred CCCCCeEEEEcCCcchhHHHhhCCCC-eEEEEeCChHHHHHHHHHhhcC
Q 024008 106 ALPKGRALVPGCGTGYDVVAMASPER-YVVGLEISDIAIKKAEELSSSL 153 (274)
Q Consensus 106 ~~~~~~vLDiG~G~G~~~~~l~~~~~-~v~~iD~s~~~~~~a~~~~~~~ 153 (274)
...+.+|+|||++.|..+++++..|+ .|++++.++...+..+++...+
T Consensus 26 dvk~KtV~dIGA~iGdSaiYF~l~GAK~Vva~E~~~kl~k~~een~k~n 74 (156)
T PHA01634 26 NVYQRTIQIVGADCGSSALYFLLRGASFVVQYEKEEKLRKKWEEVCAYF 74 (156)
T ss_pred eecCCEEEEecCCccchhhHHhhcCccEEEEeccCHHHHHHHHHHhhhh
Confidence 45678999999999999999999888 8999999999999999987655
No 273
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=97.11 E-value=0.0037 Score=59.79 Aligned_cols=124 Identities=20% Similarity=0.211 Sum_probs=79.3
Q ss_pred CCeEEEEcCCcchhHHHhhC---------C-----CCeEEEEeCCh---HHHHHHH-----------HHhhc-----CCC
Q 024008 109 KGRALVPGCGTGYDVVAMAS---------P-----ERYVVGLEISD---IAIKKAE-----------ELSSS-----LPN 155 (274)
Q Consensus 109 ~~~vLDiG~G~G~~~~~l~~---------~-----~~~v~~iD~s~---~~~~~a~-----------~~~~~-----~~~ 155 (274)
.-+|+|+|-|+|.+.....+ + ..+++++|..| +.+..+- ..... .+.
T Consensus 58 ~~~i~e~gfG~G~N~l~~~~~~~~~~~~~~~~~~~~l~~~s~E~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~ 137 (662)
T PRK01747 58 RFVIAETGFGTGLNFLATWQAFDQFRQRHPPARLKRLHFISFEKFPLTRADLARAHQHWPELAPLAEQLQAQWPLLLPGC 137 (662)
T ss_pred cEEEEecCcchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEEECCCCCHHHHHHHHhhCcccHHHHHHHHHhCCccCCCc
Confidence 46899999999997654431 1 23899999754 2222221 11111 111
Q ss_pred ------Cc--ceEEEEcccCCCCC--CCCeeEEEecccccccChhHH-HHHHHHHHhcccCCcEEEEEEccCCCCCCCCC
Q 024008 156 ------AK--FVSFLKADFFTWCP--TELFDLIFDYTFFCAIEPEMR-AAWAQKIKDFLKPDGELITLMFPISDHVGGPP 224 (274)
Q Consensus 156 ------~~--~v~~~~~d~~~~~~--~~~fD~v~~~~~~~~~~~~~~-~~~l~~l~~~L~~gG~l~~~~~~~~~~~~~~~ 224 (274)
.+ ++++..+|+.+..+ ...||+++.-..--.-.+++. ..++.++.++++|||.+....
T Consensus 138 ~~~~~~~~~~~l~l~~gd~~~~~~~~~~~~d~~~lD~FsP~~np~~W~~~~~~~l~~~~~~~~~~~t~t----------- 206 (662)
T PRK01747 138 HRLLFDDGRVTLDLWFGDANELLPQLDARADAWFLDGFAPAKNPDMWSPNLFNALARLARPGATLATFT----------- 206 (662)
T ss_pred eEEEecCCcEEEEEEecCHHHHHHhccccccEEEeCCCCCccChhhccHHHHHHHHHHhCCCCEEEEee-----------
Confidence 01 34567788766222 356999995432211122222 578999999999999998876
Q ss_pred cccCHHHHHHHHhcCCCcEEEE
Q 024008 225 YKVSVSDYEEVLQPMGFQAISI 246 (274)
Q Consensus 225 ~~~~~~~~~~~~~~~Gf~~~~~ 246 (274)
....+++-|..+||++.+.
T Consensus 207 ---~a~~vr~~l~~~GF~v~~~ 225 (662)
T PRK01747 207 ---SAGFVRRGLQEAGFTVRKV 225 (662)
T ss_pred ---hHHHHHHHHHHcCCeeeec
Confidence 6788999999999988654
No 274
>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=97.10 E-value=0.0023 Score=51.70 Aligned_cols=79 Identities=18% Similarity=0.111 Sum_probs=58.0
Q ss_pred CCeEEEEcCCcchhHHHhhC--CCCeEEEEeCChHHHHHHHHHhhcC-CCCcceEEEEc-ccCCCC-----CCCCeeEEE
Q 024008 109 KGRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSL-PNAKFVSFLKA-DFFTWC-----PTELFDLIF 179 (274)
Q Consensus 109 ~~~vLDiG~G~G~~~~~l~~--~~~~v~~iD~s~~~~~~a~~~~~~~-~~~~~v~~~~~-d~~~~~-----~~~~fD~v~ 179 (274)
..++||||.|.-+.-..+-. -|++.+|.|+++..++.|+.++..+ ++...+++..- |-...+ ..+.||++.
T Consensus 79 ~i~~LDIGvGAnCIYPliG~~eYgwrfvGseid~~sl~sA~~ii~~N~~l~~~I~lr~qk~~~~if~giig~nE~yd~tl 158 (292)
T COG3129 79 NIRILDIGVGANCIYPLIGVHEYGWRFVGSEIDSQSLSSAKAIISANPGLERAIRLRRQKDSDAIFNGIIGKNERYDATL 158 (292)
T ss_pred ceEEEeeccCcccccccccceeecceeecCccCHHHHHHHHHHHHcCcchhhheeEEeccCccccccccccccceeeeEe
Confidence 35899999888766544433 5789999999999999999999877 55555666543 222222 246899999
Q ss_pred eccccccc
Q 024008 180 DYTFFCAI 187 (274)
Q Consensus 180 ~~~~~~~~ 187 (274)
|+..||.-
T Consensus 159 CNPPFh~s 166 (292)
T COG3129 159 CNPPFHDS 166 (292)
T ss_pred cCCCcchh
Confidence 99999864
No 275
>PRK11524 putative methyltransferase; Provisional
Probab=97.10 E-value=0.0015 Score=55.65 Aligned_cols=61 Identities=18% Similarity=0.197 Sum_probs=53.9
Q ss_pred CCccHHHHHHHhcCCCCCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhc
Q 024008 92 GQPAPIIVHLHQSGALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSS 152 (274)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~ 152 (274)
..|...++.++.....+++.|||.-||+|..+.+..+.|.+++|+|++++.++.|++++..
T Consensus 192 ~kP~~L~erlI~~~S~~GD~VLDPF~GSGTT~~AA~~lgR~~IG~Ei~~~Y~~~a~~Rl~~ 252 (284)
T PRK11524 192 QKPEALLKRIILASSNPGDIVLDPFAGSFTTGAVAKASGRKFIGIEINSEYIKMGLRRLDV 252 (284)
T ss_pred cChHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHcCCCEEEEeCCHHHHHHHHHHHHh
Confidence 3456677788887778899999999999999999999999999999999999999999753
No 276
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=97.07 E-value=0.0013 Score=59.04 Aligned_cols=121 Identities=10% Similarity=0.044 Sum_probs=82.8
Q ss_pred CeEEEEcCCcchhHHHhhCCCCeEEEEeCCh----HHHHHHHHHhhcCCCCcceEEEEcccCCCC--CCCCeeEEEeccc
Q 024008 110 GRALVPGCGTGYDVVAMASPERYVVGLEISD----IAIKKAEELSSSLPNAKFVSFLKADFFTWC--PTELFDLIFDYTF 183 (274)
Q Consensus 110 ~~vLDiG~G~G~~~~~l~~~~~~v~~iD~s~----~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--~~~~fD~v~~~~~ 183 (274)
+.|+|..+|.|.++.+|.+.. |+....-| ..+...- ..|+ + =+-.|..+.+ -+.+||+|.+..+
T Consensus 367 RNVMDMnAg~GGFAAAL~~~~--VWVMNVVP~~~~ntL~vIy----dRGL---I-G~yhDWCE~fsTYPRTYDLlHA~~l 436 (506)
T PF03141_consen 367 RNVMDMNAGYGGFAAALIDDP--VWVMNVVPVSGPNTLPVIY----DRGL---I-GVYHDWCEAFSTYPRTYDLLHADGL 436 (506)
T ss_pred eeeeeecccccHHHHHhccCC--ceEEEecccCCCCcchhhh----hccc---c-hhccchhhccCCCCcchhheehhhh
Confidence 689999999999999998854 33333322 2222211 1111 1 1223555533 2578999999999
Q ss_pred ccccCh-hHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcEEEEeeccc
Q 024008 184 FCAIEP-EMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAISIVDNKL 251 (274)
Q Consensus 184 ~~~~~~-~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gf~~~~~~~~~~ 251 (274)
|..... -.+..++-++-|.|+|+|.+++-+... ...++.++++...|+.........
T Consensus 437 fs~~~~rC~~~~illEmDRILRP~G~~iiRD~~~-----------vl~~v~~i~~~lrW~~~~~d~e~g 494 (506)
T PF03141_consen 437 FSLYKDRCEMEDILLEMDRILRPGGWVIIRDTVD-----------VLEKVKKIAKSLRWEVRIHDTEDG 494 (506)
T ss_pred hhhhcccccHHHHHHHhHhhcCCCceEEEeccHH-----------HHHHHHHHHHhCcceEEEEecCCC
Confidence 887533 356789999999999999999976222 477888999999998877666443
No 277
>KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning]
Probab=97.05 E-value=0.0016 Score=58.57 Aligned_cols=103 Identities=22% Similarity=0.272 Sum_probs=76.4
Q ss_pred CeEEEEcCCcchhHHHhhC------CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCC-CCeeEEEecc
Q 024008 110 GRALVPGCGTGYDVVAMAS------PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPT-ELFDLIFDYT 182 (274)
Q Consensus 110 ~~vLDiG~G~G~~~~~l~~------~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~-~~fD~v~~~~ 182 (274)
..|+-+|+|-|-+.....+ +..+++++|-+|.++..... .....+.++|+++..|+..+.++ ++.|++++-
T Consensus 369 tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~-~n~~~W~~~Vtii~~DMR~w~ap~eq~DI~VSE- 446 (649)
T KOG0822|consen 369 TVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQN-RNFECWDNRVTIISSDMRKWNAPREQADIIVSE- 446 (649)
T ss_pred EEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhh-hchhhhcCeeEEEeccccccCCchhhccchHHH-
Confidence 4688999999988654443 45589999999999988766 34444568999999999996664 899999863
Q ss_pred ccccc-ChhHHHHHHHHHHhcccCCcEEEEEEc
Q 024008 183 FFCAI-EPEMRAAWAQKIKDFLKPDGELITLMF 214 (274)
Q Consensus 183 ~~~~~-~~~~~~~~l~~l~~~L~~gG~l~~~~~ 214 (274)
.+..+ +.+.....++-+-+.|||+|+.+=..+
T Consensus 447 LLGSFGDNELSPECLDG~q~fLkpdgIsIP~sY 479 (649)
T KOG0822|consen 447 LLGSFGDNELSPECLDGAQKFLKPDGISIPSSY 479 (649)
T ss_pred hhccccCccCCHHHHHHHHhhcCCCceEccchh
Confidence 33322 234445677889999999998765443
No 278
>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]
Probab=97.04 E-value=0.013 Score=53.91 Aligned_cols=126 Identities=21% Similarity=0.225 Sum_probs=86.4
Q ss_pred CCCeEEEEcCCcchhHHHhhC----C--CCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC-CC-----CCCCe
Q 024008 108 PKGRALVPGCGTGYDVVAMAS----P--ERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT-WC-----PTELF 175 (274)
Q Consensus 108 ~~~~vLDiG~G~G~~~~~l~~----~--~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~-----~~~~f 175 (274)
+..+|+|..||+|.......+ . ...++|.|+++.....|+.+.--.+....+....+|-.. +. ..+.|
T Consensus 186 ~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lhgi~~~~~i~~~dtl~~~~~~~~~~~~~~ 265 (489)
T COG0286 186 PRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLILHGIEGDANIRHGDTLSNPKHDDKDDKGKF 265 (489)
T ss_pred CCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHHhCCCccccccccccccCCcccccCCccce
Confidence 446999999999998766655 2 267999999999999999998777653334566666554 21 23579
Q ss_pred eEEEecccccc--cC--------------------h-hHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHH
Q 024008 176 DLIFDYTFFCA--IE--------------------P-EMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDY 232 (274)
Q Consensus 176 D~v~~~~~~~~--~~--------------------~-~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~ 232 (274)
|.|+++..+.. +. . ..-..++.++...|+|||+.-++.........+ ....+
T Consensus 266 D~viaNPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~h~~~~l~~~g~aaivl~~gvlfr~~-----~e~~I 340 (489)
T COG0286 266 DFVIANPPFSGKGWGGDLLESEQDERFFFYGVFPTKNSADLAFLQHILYKLKPGGRAAIVLPDGVLFRGG-----AEKDI 340 (489)
T ss_pred eEEEeCCCCCccccccccccccccccccccCCCCCCCchHHHHHHHHHHhcCCCceEEEEecCCcCcCCC-----chHHH
Confidence 99999988741 10 0 111578999999999998766665444332222 35566
Q ss_pred HHHHhc
Q 024008 233 EEVLQP 238 (274)
Q Consensus 233 ~~~~~~ 238 (274)
++.+-+
T Consensus 341 R~~l~~ 346 (489)
T COG0286 341 RKDLLE 346 (489)
T ss_pred HHHHHh
Confidence 666655
No 279
>COG1568 Predicted methyltransferases [General function prediction only]
Probab=97.02 E-value=0.0058 Score=50.75 Aligned_cols=142 Identities=17% Similarity=0.127 Sum_probs=100.9
Q ss_pred cCCCCCCeEEEEcCCcchhHHHhhCCC--CeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCC---CCeeEE
Q 024008 104 SGALPKGRALVPGCGTGYDVVAMASPE--RYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPT---ELFDLI 178 (274)
Q Consensus 104 ~~~~~~~~vLDiG~G~G~~~~~l~~~~--~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~---~~fD~v 178 (274)
...+.++.|+-+| -.-..+++++..+ .++..+|++...++...+.+.+.++ ++++.+..|+.++.|. ++||+.
T Consensus 148 RGDL~gK~I~vvG-DDDLtsia~aLt~mpk~iaVvDIDERli~fi~k~aee~g~-~~ie~~~~Dlr~plpe~~~~kFDvf 225 (354)
T COG1568 148 RGDLEGKEIFVVG-DDDLTSIALALTGMPKRIAVVDIDERLIKFIEKVAEELGY-NNIEAFVFDLRNPLPEDLKRKFDVF 225 (354)
T ss_pred ccCcCCCeEEEEc-CchhhHHHHHhcCCCceEEEEechHHHHHHHHHHHHHhCc-cchhheeehhcccChHHHHhhCCee
Confidence 3456678899999 4445566666544 4899999999999999999888876 4699999999997764 589999
Q ss_pred EecccccccChhHHHHHHHHHHhcccCC---cEEEEEEccCCCCCCCCCcccCHHHHHH-HHhcCCCcEEEEeecccccC
Q 024008 179 FDYTFFCAIEPEMRAAWAQKIKDFLKPD---GELITLMFPISDHVGGPPYKVSVSDYEE-VLQPMGFQAISIVDNKLAIG 254 (274)
Q Consensus 179 ~~~~~~~~~~~~~~~~~l~~l~~~L~~g---G~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Gf~~~~~~~~~~~~~ 254 (274)
+.-.+-- + +.+..++.+-...|+.- |++.+...... ...+.++++ +....||.+.++...--.+.
T Consensus 226 iTDPpeT-i--~alk~FlgRGI~tLkg~~~aGyfgiT~ress--------idkW~eiQr~lIn~~gvVITdiirnFN~Y~ 294 (354)
T COG1568 226 ITDPPET-I--KALKLFLGRGIATLKGEGCAGYFGITRRESS--------IDKWREIQRILINEMGVVITDIIRNFNEYV 294 (354)
T ss_pred ecCchhh-H--HHHHHHHhccHHHhcCCCccceEeeeecccc--------HHHHHHHHHHHHHhcCeeeHhhhhhhhccc
Confidence 8643321 1 34567777777777765 67766553221 124667777 77788998888777666666
Q ss_pred Cccc
Q 024008 255 PRKG 258 (274)
Q Consensus 255 ~~~~ 258 (274)
++.-
T Consensus 295 nwey 298 (354)
T COG1568 295 NWEY 298 (354)
T ss_pred cccc
Confidence 5543
No 280
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=96.93 E-value=0.0017 Score=53.14 Aligned_cols=58 Identities=26% Similarity=0.354 Sum_probs=46.1
Q ss_pred CCCccHHHHHHHhcCCCCCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHH
Q 024008 91 IGQPAPIIVHLHQSGALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEE 148 (274)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~ 148 (274)
...+...++.++.....++..|||.-||+|..+.+..+.|.+.+|+|+++..++.|++
T Consensus 174 ~~kP~~l~~~lI~~~t~~gdiVlDpF~GSGTT~~aa~~l~R~~ig~E~~~~y~~~a~~ 231 (231)
T PF01555_consen 174 TQKPVELIERLIKASTNPGDIVLDPFAGSGTTAVAAEELGRRYIGIEIDEEYCEIAKK 231 (231)
T ss_dssp T-S-HHHHHHHHHHHS-TT-EEEETT-TTTHHHHHHHHTT-EEEEEESSHHHHHHHHH
T ss_pred ecCCHHHHHHHHHhhhccceeeehhhhccChHHHHHHHcCCeEEEEeCCHHHHHHhcC
Confidence 3455777888887777888999999999999999999999999999999999999874
No 281
>PRK13699 putative methylase; Provisional
Probab=96.86 E-value=0.0037 Score=51.43 Aligned_cols=62 Identities=21% Similarity=0.292 Sum_probs=53.0
Q ss_pred CCccHHHHHHHhcCCCCCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcC
Q 024008 92 GQPAPIIVHLHQSGALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSL 153 (274)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~ 153 (274)
..|...+..++.....+++.|||.-||+|..+.+..+.|.+++|+|++++..+.+.+++...
T Consensus 147 ~kP~~l~~~~i~~~s~~g~~vlDpf~Gsgtt~~aa~~~~r~~~g~e~~~~y~~~~~~r~~~~ 208 (227)
T PRK13699 147 EKPVTSLQPLIESFTHPNAIVLDPFAGSGSTCVAALQSGRRYIGIELLEQYHRAGQQRLAAV 208 (227)
T ss_pred CCcHHHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHcCCCEEEEecCHHHHHHHHHHHHHH
Confidence 34566677777766678899999999999999999999999999999999999998887543
No 282
>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]
Probab=96.86 E-value=0.023 Score=49.99 Aligned_cols=137 Identities=15% Similarity=0.121 Sum_probs=92.7
Q ss_pred CCCCCeEEEEcCCcchhHHHhhC---CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCC----CCCCCeeEE
Q 024008 106 ALPKGRALVPGCGTGYDVVAMAS---PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW----CPTELFDLI 178 (274)
Q Consensus 106 ~~~~~~vLDiG~G~G~~~~~l~~---~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~----~~~~~fD~v 178 (274)
+.++.+|||..+..|.=+..++. .-..|++-|.+...+...+.++...|+. +...+..|..++ ++. +||-|
T Consensus 239 Pq~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlGv~-ntiv~n~D~~ef~~~~~~~-~fDRV 316 (460)
T KOG1122|consen 239 PQPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRLGVT-NTIVSNYDGREFPEKEFPG-SFDRV 316 (460)
T ss_pred CCCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHhCCC-ceEEEccCcccccccccCc-cccee
Confidence 45567999999999988776665 4458999999999999999999998863 466666676542 233 89999
Q ss_pred Eecccccc---cCh-----------------hHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhc
Q 024008 179 FDYTFFCA---IEP-----------------EMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQP 238 (274)
Q Consensus 179 ~~~~~~~~---~~~-----------------~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (274)
+.-..... +.. ..-++++....+++++||+|+....+.... -....+..+|+.
T Consensus 317 LLDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GGvLVYSTCSI~~~-------ENE~vV~yaL~K 389 (460)
T KOG1122|consen 317 LLDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGGVLVYSTCSITVE-------ENEAVVDYALKK 389 (460)
T ss_pred eecCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhccCCcEEEEEeeecchh-------hhHHHHHHHHHh
Confidence 96543322 100 112577888899999999999988766432 134455555555
Q ss_pred CCCcEEEEeeccccc
Q 024008 239 MGFQAISIVDNKLAI 253 (274)
Q Consensus 239 ~Gf~~~~~~~~~~~~ 253 (274)
+..+++.+....+
T Consensus 390 --~p~~kL~p~~~~i 402 (460)
T KOG1122|consen 390 --RPEVKLVPTGLDI 402 (460)
T ss_pred --CCceEeccccccC
Confidence 4334444433333
No 283
>KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification]
Probab=96.81 E-value=0.0086 Score=49.53 Aligned_cols=101 Identities=17% Similarity=0.063 Sum_probs=66.1
Q ss_pred CCeEEEEcCCcchhHHHhhC-CCCeEEEEeCChHHHHHHHHHhhc-----CCCCcceEEEEcccCCCC-----CCCCeeE
Q 024008 109 KGRALVPGCGTGYDVVAMAS-PERYVVGLEISDIAIKKAEELSSS-----LPNAKFVSFLKADFFTWC-----PTELFDL 177 (274)
Q Consensus 109 ~~~vLDiG~G~G~~~~~l~~-~~~~v~~iD~s~~~~~~a~~~~~~-----~~~~~~v~~~~~d~~~~~-----~~~~fD~ 177 (274)
..+|||+|+|+|-.++..+. .+++|+..|... .+...+.+... .++..++.....+..... ++..+|+
T Consensus 87 ~~~vlELGsGtglvG~~aa~~~~~~v~ltD~~~-~~~~L~~~~~~~~~~l~~~g~~v~v~~L~Wg~~~~~~~~~~~~~Dl 165 (248)
T KOG2793|consen 87 YINVLELGSGTGLVGILAALLLGAEVVLTDLPK-VVENLKFNRDKNNIALNQLGGSVIVAILVWGNALDVSFRLPNPFDL 165 (248)
T ss_pred ceeEEEecCCccHHHHHHHHHhcceeccCCchh-hHHHHHHhhhhhhhhhhhcCCceeEEEEecCCcccHhhccCCcccE
Confidence 46799999999987777776 678999989743 44444333222 222234555555555421 1222999
Q ss_pred EEecccccccChhHHHHHHHHHHhcccCCcEEEEE
Q 024008 178 IFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITL 212 (274)
Q Consensus 178 v~~~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~ 212 (274)
|+++.++..- .....++..+...|..++.+++.
T Consensus 166 ilasDvvy~~--~~~e~Lv~tla~ll~~~~~i~l~ 198 (248)
T KOG2793|consen 166 ILASDVVYEE--ESFEGLVKTLAFLLAKDGTIFLA 198 (248)
T ss_pred EEEeeeeecC--CcchhHHHHHHHHHhcCCeEEEE
Confidence 9999887754 34566778888889889954443
No 284
>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]
Probab=96.79 E-value=0.0073 Score=52.62 Aligned_cols=123 Identities=12% Similarity=0.045 Sum_probs=85.8
Q ss_pred CCeEEEEcCCcchhHHHhhCCCC-eEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCC----CeeEEEeccc
Q 024008 109 KGRALVPGCGTGYDVVAMASPER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTE----LFDLIFDYTF 183 (274)
Q Consensus 109 ~~~vLDiG~G~G~~~~~l~~~~~-~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~----~fD~v~~~~~ 183 (274)
..+++|+-||.|....-+...|+ .+.++|+++.+++.-+.+.+. ..++..|+....... .+|+++....
T Consensus 3 ~~~~idLFsG~GG~~lGf~~agf~~~~a~Eid~~a~~ty~~n~~~------~~~~~~di~~~~~~~~~~~~~DvligGpP 76 (328)
T COG0270 3 KMKVIDLFAGIGGLSLGFEEAGFEIVFANEIDPPAVATYKANFPH------GDIILGDIKELDGEALRKSDVDVLIGGPP 76 (328)
T ss_pred CceEEeeccCCchHHHHHHhcCCeEEEEEecCHHHHHHHHHhCCC------CceeechHhhcChhhccccCCCEEEeCCC
Confidence 35899999999999999999887 577899999999999888742 456667776532221 7899998877
Q ss_pred ccccCh--------hHH---HHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCc
Q 024008 184 FCAIEP--------EMR---AAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQ 242 (274)
Q Consensus 184 ~~~~~~--------~~~---~~~l~~l~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gf~ 242 (274)
.+.++. +.+ -.-+.++...++| .+++.+....-... ..-..+.+.+.|++.||.
T Consensus 77 CQ~FS~aG~r~~~~D~R~~L~~~~~r~I~~~~P--~~fv~ENV~gl~~~---~~~~~~~i~~~L~~~GY~ 141 (328)
T COG0270 77 CQDFSIAGKRRGYDDPRGSLFLEFIRLIEQLRP--KFFVLENVKGLLSS---KGQTFDEIKKELEELGYG 141 (328)
T ss_pred CcchhhcCcccCCcCccceeeHHHHHHHHhhCC--CEEEEecCchHHhc---CchHHHHHHHHHHHcCCc
Confidence 666532 111 2334566667777 55555533321111 223689999999999997
No 285
>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]
Probab=96.72 E-value=0.0073 Score=50.67 Aligned_cols=106 Identities=22% Similarity=0.191 Sum_probs=78.9
Q ss_pred CCCeEEEEcCCcchhHHHhhCC--CCeEEEEeCChHHHHHHHHHhhcC--CC-CcceEEEEcccCC---CCCCCCeeEEE
Q 024008 108 PKGRALVPGCGTGYDVVAMASP--ERYVVGLEISDIAIKKAEELSSSL--PN-AKFVSFLKADFFT---WCPTELFDLIF 179 (274)
Q Consensus 108 ~~~~vLDiG~G~G~~~~~l~~~--~~~v~~iD~s~~~~~~a~~~~~~~--~~-~~~v~~~~~d~~~---~~~~~~fD~v~ 179 (274)
.+++||-||.|.|......++. --++.-+|++...++..++-.+.. +. .+++.+..||.+. ....++||+|+
T Consensus 121 npkkvlVVgggDggvlrevikH~~ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~~~~~~~dVii 200 (337)
T KOG1562|consen 121 NPKKVLVVGGGDGGVLREVIKHKSVENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLEDLKENPFDVII 200 (337)
T ss_pred CCCeEEEEecCCccceeeeeccccccceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHHHHhccCCceEEE
Confidence 4589999999999999887773 238999999999999998877653 22 3679999999877 34468999999
Q ss_pred eccc--ccccChhHHHHHHHHHHhcccCCcEEEEEE
Q 024008 180 DYTF--FCAIEPEMRAAWAQKIKDFLKPDGELITLM 213 (274)
Q Consensus 180 ~~~~--~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~ 213 (274)
.-.. ......--...+...+.+.||+||++++..
T Consensus 201 ~dssdpvgpa~~lf~~~~~~~v~~aLk~dgv~~~q~ 236 (337)
T KOG1562|consen 201 TDSSDPVGPACALFQKPYFGLVLDALKGDGVVCTQG 236 (337)
T ss_pred EecCCccchHHHHHHHHHHHHHHHhhCCCcEEEEec
Confidence 5321 111111123678899999999999998754
No 286
>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised.; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.
Probab=96.72 E-value=0.0051 Score=50.38 Aligned_cols=77 Identities=22% Similarity=0.310 Sum_probs=47.7
Q ss_pred CeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHh---hcCCC-----CcceEEEEcccCCC--CCCCCeeEEE
Q 024008 110 GRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELS---SSLPN-----AKFVSFLKADFFTW--CPTELFDLIF 179 (274)
Q Consensus 110 ~~vLDiG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~---~~~~~-----~~~v~~~~~d~~~~--~~~~~fD~v~ 179 (274)
.+|||+-+|-|..++.++..|++|+++|-||-.....+.-+ ..... ..+++++.+|..+. .++++||+|+
T Consensus 77 ~~VLDaTaGLG~Da~vlA~~G~~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d~~~~L~~~~~s~DVVY 156 (234)
T PF04445_consen 77 PSVLDATAGLGRDAFVLASLGCKVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHGDALEYLRQPDNSFDVVY 156 (234)
T ss_dssp --EEETT-TTSHHHHHHHHHT--EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES-CCCHCCCHSS--SEEE
T ss_pred CEEEECCCcchHHHHHHHccCCeEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcCCHHHHHhhcCCCCCEEE
Confidence 48999999999999999888999999999997766655432 22211 14799999999884 3467999999
Q ss_pred ecccccc
Q 024008 180 DYTFFCA 186 (274)
Q Consensus 180 ~~~~~~~ 186 (274)
.-..|.+
T Consensus 157 ~DPMFp~ 163 (234)
T PF04445_consen 157 FDPMFPE 163 (234)
T ss_dssp E--S---
T ss_pred ECCCCCC
Confidence 8877765
No 287
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=96.69 E-value=0.0081 Score=51.39 Aligned_cols=80 Identities=18% Similarity=0.216 Sum_probs=57.5
Q ss_pred HHHHHHhcCCCCCCeEEEEcCCcchhHHHhhC--CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCC-----
Q 024008 97 IIVHLHQSGALPKGRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW----- 169 (274)
Q Consensus 97 ~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~--~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~----- 169 (274)
.+.+.+. ..+++..+|.=-|.|+.+..+++ ++.+++|+|.++.+++.|++++... .+++.++.+++.+.
T Consensus 11 Evl~~L~--~~~~g~~vD~T~G~GGHS~aiL~~~~~~~li~~DrD~~a~~~a~~~l~~~--~~r~~~~~~~F~~l~~~l~ 86 (310)
T PF01795_consen 11 EVLEALN--PKPGGIYVDCTFGGGGHSKAILEKLPNGRLIGIDRDPEALERAKERLKKF--DDRFIFIHGNFSNLDEYLK 86 (310)
T ss_dssp HHHHHHT----TT-EEEETT-TTSHHHHHHHHT-TT-EEEEEES-HHHHHHHHCCTCCC--CTTEEEEES-GGGHHHHHH
T ss_pred HHHHhhC--cCCCceEEeecCCcHHHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHhhc--cceEEEEeccHHHHHHHHH
Confidence 3444443 45668999999999999999987 5689999999999999999988765 37899999998761
Q ss_pred -C-CCCCeeEEEe
Q 024008 170 -C-PTELFDLIFD 180 (274)
Q Consensus 170 -~-~~~~fD~v~~ 180 (274)
. ...++|.|+.
T Consensus 87 ~~~~~~~~dgiL~ 99 (310)
T PF01795_consen 87 ELNGINKVDGILF 99 (310)
T ss_dssp HTTTTS-EEEEEE
T ss_pred HccCCCccCEEEE
Confidence 2 3357888886
No 288
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=96.52 E-value=0.06 Score=38.97 Aligned_cols=101 Identities=17% Similarity=0.130 Sum_probs=68.2
Q ss_pred CCcchhHHHhhC----CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCC-----CCCCCeeEEEeccccccc
Q 024008 117 CGTGYDVVAMAS----PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW-----CPTELFDLIFDYTFFCAI 187 (274)
Q Consensus 117 ~G~G~~~~~l~~----~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-----~~~~~fD~v~~~~~~~~~ 187 (274)
||.|..+..+++ .+..++.+|.+++.++.++... +.++.+|..+. ..-++++.+++. .
T Consensus 4 ~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~~--------~~~i~gd~~~~~~l~~a~i~~a~~vv~~-----~ 70 (116)
T PF02254_consen 4 IGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELREEG--------VEVIYGDATDPEVLERAGIEKADAVVIL-----T 70 (116)
T ss_dssp ES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHTT--------SEEEES-TTSHHHHHHTTGGCESEEEEE-----S
T ss_pred EcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHhcc--------cccccccchhhhHHhhcCccccCEEEEc-----c
Confidence 566777776665 4559999999999988887654 67899999872 223578877753 2
Q ss_pred ChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcEE
Q 024008 188 EPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAI 244 (274)
Q Consensus 188 ~~~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gf~~~ 244 (274)
+.+.....+....+.+.|...++... ...+..+.|+..|...+
T Consensus 71 ~~d~~n~~~~~~~r~~~~~~~ii~~~--------------~~~~~~~~l~~~g~d~v 113 (116)
T PF02254_consen 71 DDDEENLLIALLARELNPDIRIIARV--------------NDPENAELLRQAGADHV 113 (116)
T ss_dssp SSHHHHHHHHHHHHHHTTTSEEEEEE--------------SSHHHHHHHHHTT-SEE
T ss_pred CCHHHHHHHHHHHHHHCCCCeEEEEE--------------CCHHHHHHHHHCCcCEE
Confidence 23444455566667778888887766 34566778888887654
No 289
>COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms]
Probab=96.46 E-value=0.062 Score=42.38 Aligned_cols=133 Identities=15% Similarity=0.073 Sum_probs=86.6
Q ss_pred HHHHHhcCCCCCCeEEEEcCCcchhHHHhhC----CC--CeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCC
Q 024008 98 IVHLHQSGALPKGRALVPGCGTGYDVVAMAS----PE--RYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP 171 (274)
Q Consensus 98 ~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~----~~--~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~ 171 (274)
+++++. ..++..|+|+|.-.|..+++++. -| .+|+++|++-...+.+.... +++.|+.++-.++..
T Consensus 61 yQellw--~~~P~lvIE~Gs~~GGSal~fA~~m~s~Gq~~kvl~vdIdi~~~~p~a~e~------p~i~f~egss~dpai 132 (237)
T COG3510 61 YQELLW--ELQPSLVIEFGSRHGGSALFFANMMISIGQPFKVLGVDIDIKPLDPAAREV------PDILFIEGSSTDPAI 132 (237)
T ss_pred HHHHHH--hcCCceeEeeccccCchhhhhhHhHHhcCCCceEEEEecccCcCChhhhcC------CCeEEEeCCCCCHHH
Confidence 455554 46678999999999999998887 34 79999999866655444332 579999999876321
Q ss_pred -------CCCeeEE-EecccccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCC-CCc--c-cCHHHHHHHHhcC
Q 024008 172 -------TELFDLI-FDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGG-PPY--K-VSVSDYEEVLQPM 239 (274)
Q Consensus 172 -------~~~fD~v-~~~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~~~~-~~~--~-~~~~~~~~~~~~~ 239 (274)
.+.|--| ++...-|+. +..-+.++.+..+|..|-++++.+....+.... .+. . -..+-+.+.+++.
T Consensus 133 ~eqi~~~~~~y~kIfvilDsdHs~--~hvLAel~~~~pllsaG~Y~vVeDs~v~dlp~~~~p~~~g~gP~~AVe~ylr~~ 210 (237)
T COG3510 133 AEQIRRLKNEYPKIFVILDSDHSM--EHVLAELKLLAPLLSAGDYLVVEDSNVNDLPGPVLPWRFGGGPYEAVEAYLREF 210 (237)
T ss_pred HHHHHHHhcCCCcEEEEecCCchH--HHHHHHHHHhhhHhhcCceEEEecccccCCCCcccchhcCCChHHHHHHHHHhC
Confidence 1223233 333333433 344566788888999999999887665544321 111 1 2456677777776
Q ss_pred C
Q 024008 240 G 240 (274)
Q Consensus 240 G 240 (274)
+
T Consensus 211 p 211 (237)
T COG3510 211 P 211 (237)
T ss_pred C
Confidence 5
No 290
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=96.45 E-value=0.019 Score=49.70 Aligned_cols=94 Identities=22% Similarity=0.229 Sum_probs=65.8
Q ss_pred CCCCCeEEEEcCC-cchhHHHhhC-CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEc---ccCCCCCCCCeeEEEe
Q 024008 106 ALPKGRALVPGCG-TGYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKA---DFFTWCPTELFDLIFD 180 (274)
Q Consensus 106 ~~~~~~vLDiG~G-~G~~~~~l~~-~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~---d~~~~~~~~~fD~v~~ 180 (274)
..++.+|+=+|+| .|..+.++++ .+++|+++|.+++-.+.|++.-.. .++.. |..+.. .+.||+|+.
T Consensus 164 ~~pG~~V~I~G~GGlGh~avQ~Aka~ga~Via~~~~~~K~e~a~~lGAd-------~~i~~~~~~~~~~~-~~~~d~ii~ 235 (339)
T COG1064 164 VKPGKWVAVVGAGGLGHMAVQYAKAMGAEVIAITRSEEKLELAKKLGAD-------HVINSSDSDALEAV-KEIADAIID 235 (339)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHcCCeEEEEeCChHHHHHHHHhCCc-------EEEEcCCchhhHHh-HhhCcEEEE
Confidence 3456788888877 4466777777 889999999999999999887532 22332 222211 123999986
Q ss_pred cccccccChhHHHHHHHHHHhcccCCcEEEEEEccC
Q 024008 181 YTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPI 216 (274)
Q Consensus 181 ~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~~~ 216 (274)
.-. . ..+....+.|++||.++++-...
T Consensus 236 tv~-~--------~~~~~~l~~l~~~G~~v~vG~~~ 262 (339)
T COG1064 236 TVG-P--------ATLEPSLKALRRGGTLVLVGLPG 262 (339)
T ss_pred CCC-h--------hhHHHHHHHHhcCCEEEEECCCC
Confidence 443 2 23577889999999999987664
No 291
>COG4301 Uncharacterized conserved protein [Function unknown]
Probab=96.42 E-value=0.11 Score=42.83 Aligned_cols=105 Identities=13% Similarity=0.099 Sum_probs=74.4
Q ss_pred CCeEEEEcCCcchhHHHhhC----CC--CeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC---CCCCCCeeE-E
Q 024008 109 KGRALVPGCGTGYDVVAMAS----PE--RYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT---WCPTELFDL-I 178 (274)
Q Consensus 109 ~~~vLDiG~G~G~~~~~l~~----~~--~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~---~~~~~~fD~-v 178 (274)
+..++|+|+|+..-+..|.. .+ .+++.+|++...+....+.+...-..-.+.-+++|+.. ..+..+--+ +
T Consensus 79 ~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~ai~~~y~~l~v~~l~~~~~~~La~~~~~~~Rl~~ 158 (321)
T COG4301 79 ACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRATATAILREYPGLEVNALCGDYELALAELPRGGRRLFV 158 (321)
T ss_pred cceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHHHHHHHHHhCCCCeEeehhhhHHHHHhcccCCCeEEEE
Confidence 57999999999987766655 33 48999999998886654444332212236667888875 223222223 3
Q ss_pred EecccccccChhHHHHHHHHHHhcccCCcEEEEEE
Q 024008 179 FDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLM 213 (274)
Q Consensus 179 ~~~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~ 213 (274)
+....+..+.++....++.++...+.||-.+++..
T Consensus 159 flGStlGN~tp~e~~~Fl~~l~~a~~pGd~~LlGv 193 (321)
T COG4301 159 FLGSTLGNLTPGECAVFLTQLRGALRPGDYFLLGV 193 (321)
T ss_pred EecccccCCChHHHHHHHHHHHhcCCCcceEEEec
Confidence 33457888988899999999999999999988754
No 292
>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]
Probab=96.25 E-value=0.052 Score=44.37 Aligned_cols=107 Identities=19% Similarity=0.222 Sum_probs=69.4
Q ss_pred CCCCCeEEEEcCCcchhHHHhhC---CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCC----CCCeeEE
Q 024008 106 ALPKGRALVPGCGTGYDVVAMAS---PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP----TELFDLI 178 (274)
Q Consensus 106 ~~~~~~vLDiG~G~G~~~~~l~~---~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~----~~~fD~v 178 (274)
..++.+||-+|+++|.....+.. +...|+++|.++..-......+... .|+--+..|+..+.. -.-.|+|
T Consensus 154 ikpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAkkR---tNiiPIiEDArhP~KYRmlVgmVDvI 230 (317)
T KOG1596|consen 154 IKPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAKKR---TNIIPIIEDARHPAKYRMLVGMVDVI 230 (317)
T ss_pred ecCCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHhhcc---CCceeeeccCCCchheeeeeeeEEEE
Confidence 45678999999999998776666 5668999999864333322222221 356667777764321 1246666
Q ss_pred EecccccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCC
Q 024008 179 FDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDH 219 (274)
Q Consensus 179 ~~~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~ 219 (274)
++-- ..+++...+.-.....|++||-+++.....+-.
T Consensus 231 FaDv----aqpdq~RivaLNA~~FLk~gGhfvisikancid 267 (317)
T KOG1596|consen 231 FADV----AQPDQARIVALNAQYFLKNGGHFVISIKANCID 267 (317)
T ss_pred eccC----CCchhhhhhhhhhhhhhccCCeEEEEEeccccc
Confidence 6421 123455566677888999999999877655443
No 293
>PRK13699 putative methylase; Provisional
Probab=96.22 E-value=0.027 Score=46.37 Aligned_cols=82 Identities=15% Similarity=0.193 Sum_probs=56.2
Q ss_pred eEEEEcccCC---CCCCCCeeEEEecccccc---------cC----hhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCC
Q 024008 159 VSFLKADFFT---WCPTELFDLIFDYTFFCA---------IE----PEMRAAWAQKIKDFLKPDGELITLMFPISDHVGG 222 (274)
Q Consensus 159 v~~~~~d~~~---~~~~~~fD~v~~~~~~~~---------~~----~~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~~~~ 222 (274)
++++.+|..+ ..+++++|+|++...+.. +. .+-...++.++.++|||||.+++.....
T Consensus 2 ~~l~~gD~le~l~~lpd~SVDLIiTDPPY~i~~~~~~~~~~~~~~~~ew~~~~l~E~~RVLKpgg~l~if~~~~------ 75 (227)
T PRK13699 2 SRFILGNCIDVMARFPDNAVDFILTDPPYLVGFRDRQGRTIAGDKTDEWLQPACNEMYRVLKKDALMVSFYGWN------ 75 (227)
T ss_pred CeEEechHHHHHHhCCccccceEEeCCCcccccccCCCcccccccHHHHHHHHHHHHHHHcCCCCEEEEEeccc------
Confidence 3567788765 567889999999877641 00 1223578899999999999887643111
Q ss_pred CCcccCHHHHHHHHhcCCCcEEEEeeccc
Q 024008 223 PPYKVSVSDYEEVLQPMGFQAISIVDNKL 251 (274)
Q Consensus 223 ~~~~~~~~~~~~~~~~~Gf~~~~~~~~~~ 251 (274)
....+...++++||.+....-+..
T Consensus 76 -----~~~~~~~al~~~GF~l~~~IiW~K 99 (227)
T PRK13699 76 -----RVDRFMAAWKNAGFSVVGHLVFTK 99 (227)
T ss_pred -----cHHHHHHHHHHCCCEEeeEEEEEC
Confidence 234567788999998776555443
No 294
>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=96.20 E-value=0.014 Score=50.58 Aligned_cols=99 Identities=19% Similarity=0.069 Sum_probs=74.0
Q ss_pred CCeEEEEcCCcchhHHHhhC-CCC-eEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCC--CCeeEEEecccc
Q 024008 109 KGRALVPGCGTGYDVVAMAS-PER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPT--ELFDLIFDYTFF 184 (274)
Q Consensus 109 ~~~vLDiG~G~G~~~~~l~~-~~~-~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~--~~fD~v~~~~~~ 184 (274)
+.+|||.-+|+|.=++.++. .+. +++.-|+||.+++.+++|+..+.. .+...+..|...+... ..||+|=. .+|
T Consensus 53 ~~~v~DalsatGiRgIRya~E~~~~~v~lNDisp~Avelik~Nv~~N~~-~~~~v~n~DAN~lm~~~~~~fd~IDi-DPF 130 (380)
T COG1867 53 PKRVLDALSATGIRGIRYAVETGVVKVVLNDISPKAVELIKENVRLNSG-EDAEVINKDANALLHELHRAFDVIDI-DPF 130 (380)
T ss_pred CeEEeecccccchhHhhhhhhcCccEEEEccCCHHHHHHHHHHHHhcCc-ccceeecchHHHHHHhcCCCccEEec-CCC
Confidence 67999999999998887776 444 899999999999999999988732 3455555777664433 67888752 233
Q ss_pred cccChhHHHHHHHHHHhcccCCcEEEEEEc
Q 024008 185 CAIEPEMRAAWAQKIKDFLKPDGELITLMF 214 (274)
Q Consensus 185 ~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~ 214 (274)
. ....+++...+.++.||++.++.-
T Consensus 131 G-----SPaPFlDaA~~s~~~~G~l~vTAT 155 (380)
T COG1867 131 G-----SPAPFLDAALRSVRRGGLLCVTAT 155 (380)
T ss_pred C-----CCchHHHHHHHHhhcCCEEEEEec
Confidence 3 223477888888999999998653
No 295
>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function.; PDB: 4F3N_A 1ZKD_B.
Probab=96.14 E-value=0.034 Score=46.53 Aligned_cols=44 Identities=20% Similarity=0.083 Sum_probs=34.8
Q ss_pred CCeEEEEcCCcchhHHHhhC----------CCCeEEEEeCChHHHHHHHHHhhc
Q 024008 109 KGRALVPGCGTGYDVVAMAS----------PERYVVGLEISDIAIKKAEELSSS 152 (274)
Q Consensus 109 ~~~vLDiG~G~G~~~~~l~~----------~~~~v~~iD~s~~~~~~a~~~~~~ 152 (274)
+.+|+|+|+|+|.++..+++ ...+++.||.|+...+.-++++..
T Consensus 19 ~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~~~Q~~~L~~ 72 (252)
T PF02636_consen 19 PLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLRERQKERLSE 72 (252)
T ss_dssp -EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCHHHHHHHCCC
T ss_pred CcEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHHHHHHHHhhh
Confidence 36999999999999987765 125899999999999998888865
No 296
>KOG1253 consensus tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=95.97 E-value=0.0044 Score=55.44 Aligned_cols=104 Identities=15% Similarity=0.087 Sum_probs=80.8
Q ss_pred CCCCeEEEEcCCcchhHHHhhC--CCC-eEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC-----CCCCCCeeEE
Q 024008 107 LPKGRALVPGCGTGYDVVAMAS--PER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT-----WCPTELFDLI 178 (274)
Q Consensus 107 ~~~~~vLDiG~G~G~~~~~l~~--~~~-~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-----~~~~~~fD~v 178 (274)
.++.+|||.=|++|.-++..++ ++. .+++-|.++.+++..++++..++..+.++-...|+.. ......||+|
T Consensus 108 ~~~l~vLealsAtGlrslRya~El~~v~~v~AnD~~~~aV~~i~~Nv~~N~v~~ive~~~~DA~~lM~~~~~~~~~FDvI 187 (525)
T KOG1253|consen 108 EKSLRVLEALSATGLRSLRYAKELPGVRQVVANDLNENAVTSIQRNVELNGVEDIVEPHHSDANVLMYEHPMVAKFFDVI 187 (525)
T ss_pred cCcchHHHHhhhhhHHHHHHHHHhcchhhhcccCCCHHHHHHHHhhhhhcCchhhcccccchHHHHHHhccccccccceE
Confidence 3457999999999999988877 454 8999999999999999999888777777777788765 2334789988
Q ss_pred EecccccccChhHHHHHHHHHHhcccCCcEEEEEEccC
Q 024008 179 FDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPI 216 (274)
Q Consensus 179 ~~~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~~~ 216 (274)
-. ..+. ....+++...+.++.||++++..-.+
T Consensus 188 DL-DPyG-----s~s~FLDsAvqav~~gGLL~vT~TD~ 219 (525)
T KOG1253|consen 188 DL-DPYG-----SPSPFLDSAVQAVRDGGLLCVTCTDM 219 (525)
T ss_pred ec-CCCC-----CccHHHHHHHHHhhcCCEEEEEecch
Confidence 62 2222 23467888999999999999977443
No 297
>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [].; GO: 0008168 methyltransferase activity
Probab=95.97 E-value=0.0061 Score=43.25 Aligned_cols=47 Identities=19% Similarity=0.159 Sum_probs=35.2
Q ss_pred cHHHHHHHhcCCC--CCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChH
Q 024008 95 APIIVHLHQSGAL--PKGRALVPGCGTGYDVVAMASPERYVVGLEISDI 141 (274)
Q Consensus 95 ~~~~~~~~~~~~~--~~~~vLDiG~G~G~~~~~l~~~~~~v~~iD~s~~ 141 (274)
+..+..+...... +...-+|+|||.|.+...|...|..-.|+|.-..
T Consensus 43 AAyLi~LW~~~~~~~~~~~FVDlGCGNGLLV~IL~~EGy~G~GiD~R~R 91 (112)
T PF07757_consen 43 AAYLIELWRDMYGEQKFQGFVDLGCGNGLLVYILNSEGYPGWGIDARRR 91 (112)
T ss_pred HHHHHHHHhcccCCCCCCceEEccCCchHHHHHHHhCCCCccccccccc
Confidence 4444444444322 3468999999999999999999999999998543
No 298
>TIGR00675 dcm DNA-methyltransferase (dcm). All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=95.89 E-value=0.044 Score=47.46 Aligned_cols=131 Identities=17% Similarity=0.048 Sum_probs=80.0
Q ss_pred EEEEcCCcchhHHHhhCCCCe-EEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCC--CCCeeEEEecccccccC
Q 024008 112 ALVPGCGTGYDVVAMASPERY-VVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP--TELFDLIFDYTFFCAIE 188 (274)
Q Consensus 112 vLDiG~G~G~~~~~l~~~~~~-v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~--~~~fD~v~~~~~~~~~~ 188 (274)
|+|+-||.|....-+.+.|++ +.++|+++.+++..+.+.+. .+..+|+.+..+ -..+|+++.......++
T Consensus 1 vidLF~G~GG~~~Gl~~aG~~~~~a~e~~~~a~~ty~~N~~~-------~~~~~Di~~~~~~~~~~~dvl~gg~PCq~fS 73 (315)
T TIGR00675 1 FIDLFAGIGGIRLGFEQAGFKCVFASEIDKYAQKTYEANFGN-------KVPFGDITKISPSDIPDFDILLGGFPCQPFS 73 (315)
T ss_pred CEEEecCccHHHHHHHHcCCeEEEEEeCCHHHHHHHHHhCCC-------CCCccChhhhhhhhCCCcCEEEecCCCcccc
Confidence 589999999999999888986 45799999999998888743 334567766321 23589999876654442
Q ss_pred h--------hHHHHHHHHH---HhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcEEEEeeccccc
Q 024008 189 P--------EMRAAWAQKI---KDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAISIVDNKLAI 253 (274)
Q Consensus 189 ~--------~~~~~~l~~l---~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gf~~~~~~~~~~~~ 253 (274)
. +.+..++..+ .+.++|. +++.+....-... ...-....+...|+..||.+....-....+
T Consensus 74 ~ag~~~~~~d~r~~L~~~~~r~i~~~~P~--~~v~ENV~~l~~~--~~~~~~~~i~~~l~~~GY~v~~~~l~a~dy 145 (315)
T TIGR00675 74 IAGKRKGFEDTRGTLFFEIVRILKEKKPK--FFLLENVKGLVSH--DKGRTFKVIIETLEELGYKVYYKVLNAKDF 145 (315)
T ss_pred hhcccCCCCCchhhHHHHHHHHHhhcCCC--EEEeeccHHHHhc--ccchHHHHHHHHHHhCCCEEEEEEEcHHHC
Confidence 1 2222333333 3344553 4444432211100 001135678888999999875544433333
No 299
>KOG1227 consensus Putative methyltransferase [General function prediction only]
Probab=95.88 E-value=0.016 Score=48.83 Aligned_cols=72 Identities=11% Similarity=-0.028 Sum_probs=63.2
Q ss_pred CCeEEEEcCCcchhHH-HhhCCCC-eEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCeeEEEe
Q 024008 109 KGRALVPGCGTGYDVV-AMASPER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFD 180 (274)
Q Consensus 109 ~~~vLDiG~G~G~~~~-~l~~~~~-~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~ 180 (274)
+..|+|+=+|.|+++. .+...|+ .|+++|.+|..++..++++..+++.+++.+..+|-...-+....|-|..
T Consensus 195 ~eviVDLYAGIGYFTlpflV~agAk~V~A~EwNp~svEaLrR~~~~N~V~~r~~i~~gd~R~~~~~~~AdrVnL 268 (351)
T KOG1227|consen 195 GEVIVDLYAGIGYFTLPFLVTAGAKTVFACEWNPWSVEALRRNAEANNVMDRCRITEGDNRNPKPRLRADRVNL 268 (351)
T ss_pred cchhhhhhcccceEEeehhhccCccEEEEEecCHHHHHHHHHHHHhcchHHHHHhhhccccccCccccchheee
Confidence 4689999999999998 7777777 8999999999999999999999888888889999888777777887773
No 300
>KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.87 E-value=0.017 Score=46.69 Aligned_cols=93 Identities=16% Similarity=0.175 Sum_probs=65.3
Q ss_pred CeEEEEcCCcchhHHHhhC--------CCC---eEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCC---------
Q 024008 110 GRALVPGCGTGYDVVAMAS--------PER---YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW--------- 169 (274)
Q Consensus 110 ~~vLDiG~G~G~~~~~l~~--------~~~---~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--------- 169 (274)
.+++|+.+..|.++..|.+ .+. .+++||+-+- ++- +.|.-+++|+...
T Consensus 43 ~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~M--------aPI----~GV~qlq~DIT~~stae~Ii~h 110 (294)
T KOG1099|consen 43 KRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQPM--------API----EGVIQLQGDITSASTAEAIIEH 110 (294)
T ss_pred hHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEecccC--------Ccc----CceEEeecccCCHhHHHHHHHH
Confidence 6899999999999988876 122 3999998552 222 2477889999872
Q ss_pred CCCCCeeEEEeccc-----ccccCh----hHHHHHHHHHHhcccCCcEEEEEEc
Q 024008 170 CPTELFDLIFDYTF-----FCAIEP----EMRAAWAQKIKDFLKPDGELITLMF 214 (274)
Q Consensus 170 ~~~~~fD~v~~~~~-----~~~~~~----~~~~~~l~~l~~~L~~gG~l~~~~~ 214 (274)
+..++.|+|+|-++ +|.++. ..+-..+.-...+|+|||.++.-.|
T Consensus 111 fggekAdlVvcDGAPDvTGlHd~DEy~Q~qLllaAl~i~t~Vlk~Gg~FVaKif 164 (294)
T KOG1099|consen 111 FGGEKADLVVCDGAPDVTGLHDLDEYVQAQLLLAALNIATCVLKPGGSFVAKIF 164 (294)
T ss_pred hCCCCccEEEeCCCCCccccccHHHHHHHHHHHHHHHHHhheecCCCeeehhhh
Confidence 33468999999765 344432 2334556667788999999986443
No 301
>PF05430 Methyltransf_30: S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR008471 This entry contains several uncharacterised bacterial proteins with no known function.; GO: 0016645 oxidoreductase activity, acting on the CH-NH group of donors, 0055114 oxidation-reduction process; PDB: 2E58_D 3SGL_A 3PVC_A 3AWI_D 3PS9_A 2QY6_A.
Probab=95.73 E-value=0.0097 Score=43.98 Aligned_cols=77 Identities=23% Similarity=0.267 Sum_probs=49.6
Q ss_pred ceEEEEcccCCCC--CCCCeeEEEecccccccChhH-HHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHH
Q 024008 158 FVSFLKADFFTWC--PTELFDLIFDYTFFCAIEPEM-RAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEE 234 (274)
Q Consensus 158 ~v~~~~~d~~~~~--~~~~fD~v~~~~~~~~~~~~~-~~~~l~~l~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (274)
++++..+|+.+.. ....||+|+.-..-..-.++. ...++.++.+++++||.+.... ....+.+
T Consensus 32 ~L~L~~gDa~~~l~~l~~~~Da~ylDgFsP~~nPelWs~e~~~~l~~~~~~~~~l~Tys--------------~a~~Vr~ 97 (124)
T PF05430_consen 32 TLTLWFGDAREMLPQLDARFDAWYLDGFSPAKNPELWSEELFKKLARLSKPGGTLATYS--------------SAGAVRR 97 (124)
T ss_dssp EEEEEES-HHHHHHHB-T-EEEEEE-SS-TTTSGGGSSHHHHHHHHHHEEEEEEEEES----------------BHHHHH
T ss_pred EEEEEEcHHHHHHHhCcccCCEEEecCCCCcCCcccCCHHHHHHHHHHhCCCcEEEEee--------------chHHHHH
Confidence 4566778876521 237899999643221112221 1578999999999999987765 4678999
Q ss_pred HHhcCCCcEEEEee
Q 024008 235 VLQPMGFQAISIVD 248 (274)
Q Consensus 235 ~~~~~Gf~~~~~~~ 248 (274)
.|.++||.+.+...
T Consensus 98 ~L~~aGF~v~~~~g 111 (124)
T PF05430_consen 98 ALQQAGFEVEKVPG 111 (124)
T ss_dssp HHHHCTEEEEEEE-
T ss_pred HHHHcCCEEEEcCC
Confidence 99999999876654
No 302
>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2.1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....
Probab=95.67 E-value=0.052 Score=46.98 Aligned_cols=130 Identities=16% Similarity=0.063 Sum_probs=81.4
Q ss_pred eEEEEcCCcchhHHHhhCCCC-eEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCC----CCCCeeEEEeccccc
Q 024008 111 RALVPGCGTGYDVVAMASPER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC----PTELFDLIFDYTFFC 185 (274)
Q Consensus 111 ~vLDiG~G~G~~~~~l~~~~~-~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~----~~~~fD~v~~~~~~~ 185 (274)
+++|+-||.|.....+...|. .+.++|+++.+.+.-+.|.. ....+|+.+.. +. .+|+++......
T Consensus 2 ~~~dlFsG~Gg~~~g~~~ag~~~~~a~e~~~~a~~~y~~N~~--------~~~~~Di~~~~~~~l~~-~~D~l~ggpPCQ 72 (335)
T PF00145_consen 2 KVIDLFSGIGGFSLGLEQAGFEVVWAVEIDPDACETYKANFP--------EVICGDITEIDPSDLPK-DVDLLIGGPPCQ 72 (335)
T ss_dssp EEEEET-TTTHHHHHHHHTTEEEEEEEESSHHHHHHHHHHHT--------EEEESHGGGCHHHHHHH-T-SEEEEE---T
T ss_pred cEEEEccCccHHHHHHHhcCcEEEEEeecCHHHHHhhhhccc--------ccccccccccccccccc-cceEEEeccCCc
Confidence 689999999999999999887 68899999999999998883 67888888732 22 599999876655
Q ss_pred ccCh--------h----HHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcEEEEeeccccc
Q 024008 186 AIEP--------E----MRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAISIVDNKLAI 253 (274)
Q Consensus 186 ~~~~--------~----~~~~~l~~l~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gf~~~~~~~~~~~~ 253 (274)
.++. + ....+ -++.+.++|.- ++.+....-.. .........+.+.|++.||.+....-....+
T Consensus 73 ~fS~ag~~~~~~d~r~~L~~~~-~~~v~~~~Pk~--~~~ENV~~l~~--~~~~~~~~~i~~~l~~lGY~v~~~vlna~~y 147 (335)
T PF00145_consen 73 GFSIAGKRKGFDDPRNSLFFEF-LRIVKELKPKY--FLLENVPGLLS--SKNGEVFKEILEELEELGYNVQWRVLNAADY 147 (335)
T ss_dssp TTSTTSTHHCCCCHTTSHHHHH-HHHHHHHS-SE--EEEEEEGGGGT--GGGHHHHHHHHHHHHHTTEEEEEEEEEGGGG
T ss_pred eEeccccccccccccchhhHHH-HHHHhhccceE--EEecccceeec--cccccccccccccccccceeehhccccHhhC
Confidence 5421 1 12233 33445567643 33342221110 0011235788899999999876555444444
Q ss_pred C
Q 024008 254 G 254 (274)
Q Consensus 254 ~ 254 (274)
+
T Consensus 148 G 148 (335)
T PF00145_consen 148 G 148 (335)
T ss_dssp T
T ss_pred C
Confidence 3
No 303
>COG1565 Uncharacterized conserved protein [Function unknown]
Probab=95.62 E-value=0.045 Score=47.49 Aligned_cols=56 Identities=16% Similarity=0.065 Sum_probs=42.9
Q ss_pred HHHHHhcCCCC-CCeEEEEcCCcchhHHHhhC----------CCCeEEEEeCChHHHHHHHHHhhcC
Q 024008 98 IVHLHQSGALP-KGRALVPGCGTGYDVVAMAS----------PERYVVGLEISDIAIKKAEELSSSL 153 (274)
Q Consensus 98 ~~~~~~~~~~~-~~~vLDiG~G~G~~~~~l~~----------~~~~v~~iD~s~~~~~~a~~~~~~~ 153 (274)
+.+.+.....| +..++|+|.|+|.++..+++ ...++..||+|++....-+++++..
T Consensus 66 ~~~~wq~~g~p~~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L~~~Qk~~L~~~ 132 (370)
T COG1565 66 FLQLWQELGRPAPLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPELRARQKETLKAT 132 (370)
T ss_pred HHHHHHHhcCCCCceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHHHHHHHHHHHhcc
Confidence 44444444444 46899999999999887765 2458999999999999888887665
No 304
>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known.
Probab=95.49 E-value=0.18 Score=39.35 Aligned_cols=82 Identities=20% Similarity=0.201 Sum_probs=58.1
Q ss_pred EEcccCCC---C--CCCCeeEEEecccccc-----------cChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCc
Q 024008 162 LKADFFTW---C--PTELFDLIFDYTFFCA-----------IEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPY 225 (274)
Q Consensus 162 ~~~d~~~~---~--~~~~fD~v~~~~~~~~-----------~~~~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~~~~~~~ 225 (274)
...|+.+. . ....||.|+.+.+... .....+..++..+.++|+++|.+.+...... +
T Consensus 58 ~~VDat~l~~~~~~~~~~FDrIiFNFPH~G~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~~G~IhVTl~~~~------p- 130 (166)
T PF10354_consen 58 HGVDATKLHKHFRLKNQRFDRIIFNFPHVGGGSEDGKRNIRLNRELLRGFFKSASQLLKPDGEIHVTLKDGQ------P- 130 (166)
T ss_pred cCCCCCcccccccccCCcCCEEEEeCCCCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCC------C-
Confidence 33466552 2 3578999998866443 1123457888999999999999998774332 2
Q ss_pred ccCHHHHHHHHhcCCCcEEEEeeccc
Q 024008 226 KVSVSDYEEVLQPMGFQAISIVDNKL 251 (274)
Q Consensus 226 ~~~~~~~~~~~~~~Gf~~~~~~~~~~ 251 (274)
++.-.+.++.+.+||.++.......
T Consensus 131 -y~~W~i~~lA~~~gl~l~~~~~F~~ 155 (166)
T PF10354_consen 131 -YDSWNIEELAAEAGLVLVRKVPFDP 155 (166)
T ss_pred -CccccHHHHHHhcCCEEEEEecCCH
Confidence 3567888999999999988876543
No 305
>PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species.
Probab=95.45 E-value=0.043 Score=42.04 Aligned_cols=131 Identities=19% Similarity=0.142 Sum_probs=72.6
Q ss_pred CCeEEEEcCCcchhHHHhhCCCC-eEEEEeCChHHHHH-HHHHhhcCCCCcceEEEEcccCC--CCCCCCeeEEEecccc
Q 024008 109 KGRALVPGCGTGYDVVAMASPER-YVVGLEISDIAIKK-AEELSSSLPNAKFVSFLKADFFT--WCPTELFDLIFDYTFF 184 (274)
Q Consensus 109 ~~~vLDiG~G~G~~~~~l~~~~~-~v~~iD~s~~~~~~-a~~~~~~~~~~~~v~~~~~d~~~--~~~~~~fD~v~~~~~~ 184 (274)
+++.+-+|+..=-.=......|+ ++..+|.++--+.. .+.++ -.+...|+.. ..-.++||.+.+..++
T Consensus 2 ~~~g~V~GS~~PwvEv~aL~~GA~~iltveyn~L~i~~~~~dr~--------ssi~p~df~~~~~~y~~~fD~~as~~si 73 (177)
T PF03269_consen 2 GKSGLVVGSMQPWVEVMALQHGAAKILTVEYNKLEIQEEFRDRL--------SSILPVDFAKNWQKYAGSFDFAASFSSI 73 (177)
T ss_pred CceEEEEecCCchhhHHHHHcCCceEEEEeecccccCccccccc--------ccccHHHHHHHHHHhhccchhhheechh
Confidence 34667777664322122222444 78889987632111 11111 1223333332 1224679999999988
Q ss_pred ccc---------ChhHHHHHHHHHHhcccCCcEEEEEEccCCCC-CCCCCcccCHHHHHHHHhcCCCcEEEEeec
Q 024008 185 CAI---------EPEMRAAWAQKIKDFLKPDGELITLMFPISDH-VGGPPYKVSVSDYEEVLQPMGFQAISIVDN 249 (274)
Q Consensus 185 ~~~---------~~~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~Gf~~~~~~~~ 249 (274)
+|. ++.--...+.++..+||+||.+++...-..+. ..+....+....+.-++. ||+.+..-..
T Consensus 74 Eh~GLGRYGDPidp~Gdl~~m~~i~~vLK~GG~L~l~vPvG~d~i~fNahRiYg~~rL~mm~~--gfe~i~tfs~ 146 (177)
T PF03269_consen 74 EHFGLGRYGDPIDPIGDLRAMAKIKCVLKPGGLLFLGVPVGTDAIQFNAHRIYGPIRLAMMFY--GFEWIDTFSG 146 (177)
T ss_pred ccccccccCCCCCccccHHHHHHHHHhhccCCeEEEEeecCCcceEEecceeecHhHHHHHhC--CcEEEeeecc
Confidence 775 22222456789999999999999876433322 112222345666655554 8988887554
No 306
>KOG2912 consensus Predicted DNA methylase [Function unknown]
Probab=95.37 E-value=0.052 Score=46.13 Aligned_cols=90 Identities=16% Similarity=0.147 Sum_probs=63.9
Q ss_pred cHHHHHHHhcCCCCCCe---EEEEcCCcchhHHHhhC--CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC-
Q 024008 95 APIIVHLHQSGALPKGR---ALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT- 168 (274)
Q Consensus 95 ~~~~~~~~~~~~~~~~~---vLDiG~G~G~~~~~l~~--~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~- 168 (274)
...+.+++........+ =+|||.|+.+.-..+.. .++...++|++...+..|+.++..++++..+..+.....+
T Consensus 86 ihwI~DLLss~q~~k~~i~~GiDIgtgasci~~llg~rq~n~~f~~teidd~s~~~a~snV~qn~lss~ikvV~~~~~kt 165 (419)
T KOG2912|consen 86 IHWIEDLLSSQQSDKSTIRRGIDIGTGASCIYPLLGARQNNWYFLATEIDDMSFNYAKSNVEQNNLSSLIKVVKVEPQKT 165 (419)
T ss_pred HHHHHHHhhcccCCCcceeeeeeccCchhhhHHhhhchhccceeeeeeccccccchhhccccccccccceeeEEecchhh
Confidence 34455666544222233 37999888776554433 5789999999999999999999999988888887775443
Q ss_pred -------CCCCCCeeEEEecccc
Q 024008 169 -------WCPTELFDLIFDYTFF 184 (274)
Q Consensus 169 -------~~~~~~fD~v~~~~~~ 184 (274)
..+...||+..|+..|
T Consensus 166 ll~d~~~~~~e~~ydFcMcNPPF 188 (419)
T KOG2912|consen 166 LLMDALKEESEIIYDFCMCNPPF 188 (419)
T ss_pred cchhhhccCccceeeEEecCCch
Confidence 2233469999998765
No 307
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=95.35 E-value=0.14 Score=47.22 Aligned_cols=98 Identities=17% Similarity=0.286 Sum_probs=62.8
Q ss_pred CCCCeEEEEcCCcc-hhHHHhhC-CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC-----------CC---
Q 024008 107 LPKGRALVPGCGTG-YDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT-----------WC--- 170 (274)
Q Consensus 107 ~~~~~vLDiG~G~G-~~~~~l~~-~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-----------~~--- 170 (274)
.++.+|+=+|||.= ..+...++ .|+.|+++|.+++.++.++..- .++...|..+ ..
T Consensus 163 ~pg~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~~rle~aeslG--------A~~v~i~~~e~~~~~~gya~~~s~~~ 234 (509)
T PRK09424 163 VPPAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRPEVAEQVESMG--------AEFLELDFEEEGGSGDGYAKVMSEEF 234 (509)
T ss_pred cCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcC--------CeEEEeccccccccccchhhhcchhH
Confidence 46789999999974 44455555 7889999999999999888742 1222111100 00
Q ss_pred --------C--CCCeeEEEecccccccChhHHHHHHHHHHhcccCCcEEEEEEc
Q 024008 171 --------P--TELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMF 214 (274)
Q Consensus 171 --------~--~~~fD~v~~~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~ 214 (274)
. ...+|+|+.......-. ....+.+++.+.++|||.++....
T Consensus 235 ~~~~~~~~~~~~~gaDVVIetag~pg~~--aP~lit~~~v~~mkpGgvIVdvg~ 286 (509)
T PRK09424 235 IKAEMALFAEQAKEVDIIITTALIPGKP--APKLITAEMVASMKPGSVIVDLAA 286 (509)
T ss_pred HHHHHHHHHhccCCCCEEEECCCCCccc--CcchHHHHHHHhcCCCCEEEEEcc
Confidence 0 14699999765432211 112234889999999999887654
No 308
>PTZ00357 methyltransferase; Provisional
Probab=95.25 E-value=0.07 Score=50.07 Aligned_cols=96 Identities=17% Similarity=0.130 Sum_probs=61.2
Q ss_pred eEEEEcCCcchhHHHhhC----C--CCeEEEEeCChHHHHHHHHHh---hcCCC-----CcceEEEEcccCCCCCC----
Q 024008 111 RALVPGCGTGYDVVAMAS----P--ERYVVGLEISDIAIKKAEELS---SSLPN-----AKFVSFLKADFFTWCPT---- 172 (274)
Q Consensus 111 ~vLDiG~G~G~~~~~l~~----~--~~~v~~iD~s~~~~~~a~~~~---~~~~~-----~~~v~~~~~d~~~~~~~---- 172 (274)
.|+-+|+|-|-+.....+ . ..++++||-++.++.....+. ..+.. .++|+++..|+..+..+
T Consensus 703 VImVVGAGRGPLVdraLrAak~~gvkVrIyAVEKNPpAA~~tllr~~N~eeW~n~~~~~G~~VtII~sDMR~W~~pe~~~ 782 (1072)
T PTZ00357 703 HLVLLGCGRGPLIDECLHAVSALGVRLRIFAIEKNLPAAAFTRMRWANDPEWTQLAYTFGHTLEVIVADGRTIATAAENG 782 (1072)
T ss_pred EEEEEcCCccHHHHHHHHHHHHcCCcEEEEEEecCcchHHHHHHHHhcccccccccccCCCeEEEEeCcccccccccccc
Confidence 589999999988654433 2 348999999977554444442 22211 35699999999985322
Q ss_pred --------CCeeEEEe--cccccccChhHHHHHHHHHHhcccC----CcE
Q 024008 173 --------ELFDLIFD--YTFFCAIEPEMRAAWAQKIKDFLKP----DGE 208 (274)
Q Consensus 173 --------~~fD~v~~--~~~~~~~~~~~~~~~l~~l~~~L~~----gG~ 208 (274)
+++|+||+ .+.|.. .+...+.|+-+.+.||+ +|+
T Consensus 783 s~~~P~~~gKaDIVVSELLGSFGD--NELSPECLDGaQrfLKdiqhsdGI 830 (1072)
T PTZ00357 783 SLTLPADFGLCDLIVSELLGSLGD--NELSPECLEAFHAQLEDIQLSRGI 830 (1072)
T ss_pred cccccccccccceehHhhhccccc--ccCCHHHHHHHHHhhhhhcccccc
Confidence 27999997 344443 22334455556666655 675
No 309
>PF10237 N6-adenineMlase: Probable N6-adenine methyltransferase; InterPro: IPR019369 This family of proteins, which are of approximately 200 residues in length, contain a highly conserved Glu-Phe-Trp (QFW) motif close to the N terminus and an Asp/Asn-Pro-Pro-Tyr/Phe motif in the centre. This latter motif is characteristic of N-6 adenine-specific DNA methylases and could be involved in substrate binding or in the catalytic activity (, ).
Probab=95.21 E-value=0.55 Score=36.40 Aligned_cols=106 Identities=21% Similarity=0.184 Sum_probs=70.9
Q ss_pred cHHHHHHHhcCCCCCCeEEEEcCCcchhHHHh-hCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCC--C-
Q 024008 95 APIIVHLHQSGALPKGRALVPGCGTGYDVVAM-ASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW--C- 170 (274)
Q Consensus 95 ~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l-~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--~- 170 (274)
...+...+........+|+-|||=+-...+.- ...+.+++..|++...-... .+ .|+--|...+ .
T Consensus 12 ~~~l~~~l~~~~~~~~~iaclstPsl~~~l~~~~~~~~~~~Lle~D~RF~~~~----------~~-~F~fyD~~~p~~~~ 80 (162)
T PF10237_consen 12 AEFLARELLDGALDDTRIACLSTPSLYEALKKESKPRIQSFLLEYDRRFEQFG----------GD-EFVFYDYNEPEELP 80 (162)
T ss_pred HHHHHHHHHHhcCCCCEEEEEeCcHHHHHHHhhcCCCccEEEEeecchHHhcC----------Cc-ceEECCCCChhhhh
Confidence 44444444443445579999999775555444 22667999999988632211 22 4666666552 1
Q ss_pred --CCCCeeEEEecccccccChhHHHHHHHHHHhcccCCcEEEEEE
Q 024008 171 --PTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLM 213 (274)
Q Consensus 171 --~~~~fD~v~~~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~ 213 (274)
-.++||+|++-..+ +..+...+....+..++++++.+++..
T Consensus 81 ~~l~~~~d~vv~DPPF--l~~ec~~k~a~ti~~L~k~~~kii~~T 123 (162)
T PF10237_consen 81 EELKGKFDVVVIDPPF--LSEECLTKTAETIRLLLKPGGKIILCT 123 (162)
T ss_pred hhcCCCceEEEECCCC--CCHHHHHHHHHHHHHHhCccceEEEec
Confidence 14689999998888 666777778788888889988888764
No 310
>PF05711 TylF: Macrocin-O-methyltransferase (TylF); InterPro: IPR008884 This family consists of bacterial macrocin O-methyltransferase (TylF) proteins. TylF is responsible for the methylation of macrocin to produce tylosin. Tylosin is a macrolide antibiotic used in veterinary medicine to treat infections caused by Gram-positive bacteria and as an animal growth promoter in the Sus scrofa (Pig) industry. It is produced by several Streptomyces species. As with other macrolides, the antibiotic activity of tylosin is due to the inhibition of protein biosynthesis by a mechanism that involves the binding of tylosin to the ribosome, preventing the formation of the mRNA-aminoacyl-tRNA-ribosome complex [].; PDB: 3TOS_D 2WK1_A.
Probab=95.10 E-value=0.1 Score=43.32 Aligned_cols=123 Identities=16% Similarity=0.142 Sum_probs=72.8
Q ss_pred CCCeEEEEcCCcchhHHHhhC-------CCCeEEEEeCC--------------------------hHHHHHHHHHhhcCC
Q 024008 108 PKGRALVPGCGTGYDVVAMAS-------PERYVVGLEIS--------------------------DIAIKKAEELSSSLP 154 (274)
Q Consensus 108 ~~~~vLDiG~G~G~~~~~l~~-------~~~~v~~iD~s--------------------------~~~~~~a~~~~~~~~ 154 (274)
-++-|+|+||-.|..++.++. .+.+++++|-- ....+..++++...+
T Consensus 74 vpGdivE~GV~rGgs~~~~~~~l~~~~~~~R~i~lfDSFeG~P~~~~~d~~~d~~~~~~~~~~~~~~s~e~V~~n~~~~g 153 (248)
T PF05711_consen 74 VPGDIVECGVWRGGSSILMRAVLEAYGNPDRRIYLFDSFEGFPEPDEEDYPADKGWEFHEYNGYLAVSLEEVRENFARYG 153 (248)
T ss_dssp S-SEEEEE--TTSHHHHHHHHHHHCTTTTS--EEEEE-SSSSSS--CCCTCCCCHCTCCGCCHHCTHHHHHHHHCCCCTT
T ss_pred CCeEEEEEeeCCCHHHHHHHHHHHHhCCCCCEEEEEeCCCCCCCCccccccccchhhhhhcccccccCHHHHHHHHHHcC
Confidence 458999999999987755432 34578887732 124555666666655
Q ss_pred C-CcceEEEEcccCCCCCCCCeeEEEecccccccCh---hHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHH
Q 024008 155 N-AKFVSFLKADFFTWCPTELFDLIFDYTFFCAIEP---EMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVS 230 (274)
Q Consensus 155 ~-~~~v~~~~~d~~~~~~~~~fD~v~~~~~~~~~~~---~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~ 230 (274)
+ .+++.++.|.+.+..+..+.+-| ++-+++- +.....|+.++..|.|||++++-+++.. --..
T Consensus 154 l~~~~v~~vkG~F~dTLp~~p~~~I----All~lD~DlYesT~~aLe~lyprl~~GGiIi~DDY~~~---------gcr~ 220 (248)
T PF05711_consen 154 LLDDNVRFVKGWFPDTLPDAPIERI----ALLHLDCDLYESTKDALEFLYPRLSPGGIIIFDDYGHP---------GCRK 220 (248)
T ss_dssp TSSTTEEEEES-HHHHCCC-TT--E----EEEEE---SHHHHHHHHHHHGGGEEEEEEEEESSTTTH---------HHHH
T ss_pred CCcccEEEECCcchhhhccCCCccE----EEEEEeccchHHHHHHHHHHHhhcCCCeEEEEeCCCCh---------HHHH
Confidence 4 46899999999774443222211 1222322 3446788999999999999999776541 1255
Q ss_pred HHHHHHhcCCCcE
Q 024008 231 DYEEVLQPMGFQA 243 (274)
Q Consensus 231 ~~~~~~~~~Gf~~ 243 (274)
-+.+.++++|...
T Consensus 221 AvdeF~~~~gi~~ 233 (248)
T PF05711_consen 221 AVDEFRAEHGITD 233 (248)
T ss_dssp HHHHHHHHTT--S
T ss_pred HHHHHHHHcCCCC
Confidence 6777788888654
No 311
>KOG2671 consensus Putative RNA methylase [Replication, recombination and repair]
Probab=95.05 E-value=0.044 Score=47.11 Aligned_cols=109 Identities=20% Similarity=0.173 Sum_probs=78.0
Q ss_pred CCCCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHH-------HHHHhhcCCCC-cceEEEEcccCCC--CCCCCe
Q 024008 106 ALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKK-------AEELSSSLPNA-KFVSFLKADFFTW--CPTELF 175 (274)
Q Consensus 106 ~~~~~~vLDiG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~-------a~~~~~~~~~~-~~v~~~~~d~~~~--~~~~~f 175 (274)
..++..|+|.-.|||.++...+.-|+.|.|.|++-.++.. .+.|.+..+.+ --+..+.+|..+. -....|
T Consensus 206 v~pGdivyDPFVGTGslLvsaa~FGa~viGtDIDyr~vragrg~~~si~aNFkQYg~~~~fldvl~~D~sn~~~rsn~~f 285 (421)
T KOG2671|consen 206 VKPGDIVYDPFVGTGSLLVSAAHFGAYVIGTDIDYRTVRAGRGEDESIKANFKQYGSSSQFLDVLTADFSNPPLRSNLKF 285 (421)
T ss_pred cCCCCEEecCccccCceeeehhhhcceeeccccchheeecccCCCcchhHhHHHhCCcchhhheeeecccCcchhhccee
Confidence 4567899999999999999999999999999999877763 34455555432 2356788888772 224579
Q ss_pred eEEEeccccccc------------------------Ch-------hHHHHHHHHHHhcccCCcEEEEEEc
Q 024008 176 DLIFDYTFFCAI------------------------EP-------EMRAAWAQKIKDFLKPDGELITLMF 214 (274)
Q Consensus 176 D~v~~~~~~~~~------------------------~~-------~~~~~~l~~l~~~L~~gG~l~~~~~ 214 (274)
|.|+|-..+.-- |. ......+.-..+.|..||+++....
T Consensus 286 DaIvcDPPYGVRe~~rk~~~k~~~r~~~~~~~~~h~p~~~~ysl~~~v~dll~fss~~L~~ggrlv~w~p 355 (421)
T KOG2671|consen 286 DAIVCDPPYGVREGARKTGKKKSVRTTEESSRGDHYPSTEQYSLSSLVYDLLCFSSRRLVDGGRLVFWLP 355 (421)
T ss_pred eEEEeCCCcchhhhhhhhcccCcccCcccccccccCCccchhHHHHHHhhHHHhhHhhhhcCceEEEecC
Confidence 999997665321 10 1124566777888999999887554
No 312
>KOG2920 consensus Predicted methyltransferase [General function prediction only]
Probab=94.98 E-value=0.011 Score=49.42 Aligned_cols=106 Identities=17% Similarity=0.174 Sum_probs=63.1
Q ss_pred CCCCCeEEEEcCCcchhHHHhhCCC-CeEEEEeCChHHHHHHH-HHhhcCC-----CCcc---eEEEEc---ccCCCCCC
Q 024008 106 ALPKGRALVPGCGTGYDVVAMASPE-RYVVGLEISDIAIKKAE-ELSSSLP-----NAKF---VSFLKA---DFFTWCPT 172 (274)
Q Consensus 106 ~~~~~~vLDiG~G~G~~~~~l~~~~-~~v~~iD~s~~~~~~a~-~~~~~~~-----~~~~---v~~~~~---d~~~~~~~ 172 (274)
...+++|||+|||+|...+.....+ ..+...|++.+.+..-. .+..... ..++ ..+... |. .....
T Consensus 114 ~~~~k~vLELgCg~~Lp~i~~~~~~~~~~~fqD~na~vl~~~t~pn~~~~~~~~~~~~e~~~~~~i~~s~l~dg-~~~~t 192 (282)
T KOG2920|consen 114 SFSGKRVLELGCGAALPGIFAFVKGAVSVHFQDFNAEVLRLVTLPNILVNSHAGVEEKENHKVDEILNSLLSDG-VFNHT 192 (282)
T ss_pred EecCceeEecCCcccccchhhhhhccceeeeEecchhheeeecccceecchhhhhhhhhcccceeccccccccc-hhhhc
Confidence 4567899999999999998887766 58888898887773211 1100000 0011 112222 22 11222
Q ss_pred C--CeeEEEecccccccChhHHHHHHHHHHhcccCCcEEEEEE
Q 024008 173 E--LFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLM 213 (274)
Q Consensus 173 ~--~fD~v~~~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~ 213 (274)
+ .||+|.++..+...+. ....+.......++++|+++...
T Consensus 193 ~~~~ydlIlsSetiy~~~~-~~~~~~~~r~~l~~~D~~~~~aA 234 (282)
T KOG2920|consen 193 ERTHYDLILSSETIYSIDS-LAVLYLLHRPCLLKTDGVFYVAA 234 (282)
T ss_pred cccchhhhhhhhhhhCcch-hhhhHhhhhhhcCCccchhhhhh
Confidence 3 7999998887776532 22222566677788899877654
No 313
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=94.96 E-value=0.058 Score=47.80 Aligned_cols=61 Identities=13% Similarity=0.089 Sum_probs=54.3
Q ss_pred cceEEEEcccCC---CCCCCCeeEEEecccccccChhHHHHHHHHHHhcccCCcEEEEEEccCC
Q 024008 157 KFVSFLKADFFT---WCPTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPIS 217 (274)
Q Consensus 157 ~~v~~~~~d~~~---~~~~~~fD~v~~~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~~~~ 217 (274)
+++++..+++.+ -.+++++|.++.+....+++++.....++++.+.++|||+++.-.....
T Consensus 275 drv~i~t~si~~~L~~~~~~s~~~~vL~D~~Dwm~~~~~~~~~~~l~~~~~pgaRV~~Rsa~~~ 338 (380)
T PF11899_consen 275 DRVRIHTDSIEEVLRRLPPGSFDRFVLSDHMDWMDPEQLNEEWQELARTARPGARVLWRSAAVP 338 (380)
T ss_pred CeEEEEeccHHHHHHhCCCCCeeEEEecchhhhCCHHHHHHHHHHHHHHhCCCCEEEEeeCCCC
Confidence 789999999987 3467899999999999999999999999999999999999998776543
No 314
>KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis]
Probab=94.86 E-value=0.49 Score=41.28 Aligned_cols=135 Identities=14% Similarity=0.116 Sum_probs=85.5
Q ss_pred CCCCCeEEEEcCCcchhHHHhhCCC------CeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC---C-----C-
Q 024008 106 ALPKGRALVPGCGTGYDVVAMASPE------RYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT---W-----C- 170 (274)
Q Consensus 106 ~~~~~~vLDiG~G~G~~~~~l~~~~------~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~---~-----~- 170 (274)
..++.+|||+.+..|.=+.++.+.. ..+++=|+++..+...+......+ +.++.+...|+.. . .
T Consensus 153 v~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~l~-~~~~~v~~~~~~~~p~~~~~~~~~ 231 (375)
T KOG2198|consen 153 VKPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKRLP-SPNLLVTNHDASLFPNIYLKDGND 231 (375)
T ss_pred cCCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhccC-CcceeeecccceeccccccccCch
Confidence 4567899999999999998887722 279999999999888888774432 2344444444432 1 1
Q ss_pred -CCCCeeEEEecccc------cccCh---------------hHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccC
Q 024008 171 -PTELFDLIFDYTFF------CAIEP---------------EMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVS 228 (274)
Q Consensus 171 -~~~~fD~v~~~~~~------~~~~~---------------~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~~~~~~~~~~ 228 (274)
....||-|++--.. ..-+. ..--.++.+-.++|++||.++....+.... -.
T Consensus 232 ~~~~~fDrVLvDVPCS~Dgt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL~rgl~lLk~GG~lVYSTCSLnpi-------eN 304 (375)
T KOG2198|consen 232 KEQLKFDRVLVDVPCSGDGTLRKNPNIWKEGWKTQRALGLHALQLRILRRGLRLLKVGGRLVYSTCSLNPI-------EN 304 (375)
T ss_pred hhhhhcceeEEecccCCCcccccCchHhhhhhhhhhccCChHHHHHHHHHHHHHhcCCCEEEEeccCCCch-------hh
Confidence 22468988863211 10000 111367888999999999999887655321 13
Q ss_pred HHHHHHHHhcCC--CcEEEEee
Q 024008 229 VSDYEEVLQPMG--FQAISIVD 248 (274)
Q Consensus 229 ~~~~~~~~~~~G--f~~~~~~~ 248 (274)
..-+.++++..| +.++.+..
T Consensus 305 EaVV~~~L~~~~~~~~lv~~~~ 326 (375)
T KOG2198|consen 305 EAVVQEALQKVGGAVELVDVSG 326 (375)
T ss_pred HHHHHHHHHHhcCcccceeecc
Confidence 555666666555 55554444
No 315
>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3). Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.
Probab=94.86 E-value=0.018 Score=41.14 Aligned_cols=75 Identities=21% Similarity=0.314 Sum_probs=42.5
Q ss_pred CeeEEEeccccccc----ChhHHHHHHHHHHhcccCCcEEEEEEccCC--CCCCCC---------CcccCHHHHHHHHhc
Q 024008 174 LFDLIFDYTFFCAI----EPEMRAAWAQKIKDFLKPDGELITLMFPIS--DHVGGP---------PYKVSVSDYEEVLQP 238 (274)
Q Consensus 174 ~fD~v~~~~~~~~~----~~~~~~~~l~~l~~~L~~gG~l~~~~~~~~--~~~~~~---------~~~~~~~~~~~~~~~ 238 (274)
+||+|+|..+--++ .++-+..+++++++.|+|||.+++.-.+=. ...... ...+.++++...+.+
T Consensus 1 ~yDvilclSVtkWIHLn~GD~Gl~~~f~~~~~~L~pGG~lilEpQ~w~sY~~~~~~~~~~~~n~~~i~lrP~~F~~~L~~ 80 (110)
T PF06859_consen 1 QYDVILCLSVTKWIHLNWGDEGLKRFFRRIYSLLRPGGILILEPQPWKSYKKAKRLSEEIRENYKSIKLRPDQFEDYLLE 80 (110)
T ss_dssp -EEEEEEES-HHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE---HHHHHTTTTS-HHHHHHHHH----GGGHHHHHTS
T ss_pred CccEEEEEEeeEEEEecCcCHHHHHHHHHHHHhhCCCCEEEEeCCCcHHHHHHhhhhHHHHhHHhceEEChHHHHHHHHh
Confidence 48999998875443 235567899999999999999998653210 000000 112467788888887
Q ss_pred --CCCcEEEEee
Q 024008 239 --MGFQAISIVD 248 (274)
Q Consensus 239 --~Gf~~~~~~~ 248 (274)
.||..++...
T Consensus 81 ~evGF~~~e~~~ 92 (110)
T PF06859_consen 81 PEVGFSSVEELG 92 (110)
T ss_dssp TTT---EEEEE-
T ss_pred cccceEEEEEcc
Confidence 5888776433
No 316
>COG1255 Uncharacterized protein conserved in archaea [Function unknown]
Probab=94.73 E-value=0.22 Score=35.86 Aligned_cols=81 Identities=17% Similarity=0.143 Sum_probs=55.3
Q ss_pred CCeEEEEcCCcchh-HHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCC--CCCCeeEEEeccccc
Q 024008 109 KGRALVPGCGTGYD-VVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC--PTELFDLIFDYTFFC 185 (274)
Q Consensus 109 ~~~vLDiG~G~G~~-~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--~~~~fD~v~~~~~~~ 185 (274)
.++|+|+|-|-=.. +..|++.|+.++++|+++. +.+ . .++++..|++++. -....|+|++.-
T Consensus 14 ~gkVvEVGiG~~~~VA~~L~e~g~dv~atDI~~~-------~a~-~----g~~~v~DDitnP~~~iY~~A~lIYSiR--- 78 (129)
T COG1255 14 RGKVVEVGIGFFLDVAKRLAERGFDVLATDINEK-------TAP-E----GLRFVVDDITNPNISIYEGADLIYSIR--- 78 (129)
T ss_pred CCcEEEEccchHHHHHHHHHHcCCcEEEEecccc-------cCc-c----cceEEEccCCCccHHHhhCccceeecC---
Confidence 45999998776433 4566779999999999886 222 2 3899999999843 235678888642
Q ss_pred ccChhHHHHHHHHHHhcccCC
Q 024008 186 AIEPEMRAAWAQKIKDFLKPD 206 (274)
Q Consensus 186 ~~~~~~~~~~l~~l~~~L~~g 206 (274)
+++++...+-++.+.++-.
T Consensus 79 --pppEl~~~ildva~aVga~ 97 (129)
T COG1255 79 --PPPELQSAILDVAKAVGAP 97 (129)
T ss_pred --CCHHHHHHHHHHHHhhCCC
Confidence 3345555556666655433
No 317
>COG3315 O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=94.68 E-value=0.55 Score=40.31 Aligned_cols=136 Identities=15% Similarity=0.096 Sum_probs=94.8
Q ss_pred CCeEEEEcCCcchhHHHhhC--C-CCeEEEEeCChHHHHHHHHHhhcCCC--CcceEEEEcccCCC-----C-----CCC
Q 024008 109 KGRALVPGCGTGYDVVAMAS--P-ERYVVGLEISDIAIKKAEELSSSLPN--AKFVSFLKADFFTW-----C-----PTE 173 (274)
Q Consensus 109 ~~~vLDiG~G~G~~~~~l~~--~-~~~v~~iD~s~~~~~~a~~~~~~~~~--~~~v~~~~~d~~~~-----~-----~~~ 173 (274)
-..|+-+|||- .+....- + +.+|+-+|. |+.++.=++.+++.+. ..++.++..|+... . ..+
T Consensus 93 ~~qvViLgaGL--DTRayRl~~~~~~~vfEvD~-Pevi~~K~~~l~e~~~~~~~~~~~Va~Dl~~~dw~~~L~~~G~d~~ 169 (297)
T COG3315 93 IRQVVILGAGL--DTRAYRLDWPKGTRVFEVDL-PEVIEFKKKLLAERGATPPAHRRLVAVDLREDDWPQALAAAGFDRS 169 (297)
T ss_pred ccEEEEecccc--ccceeecCCCCCCeEEECCC-cHHHHHHHHHhhhcCCCCCceEEEEeccccccchHHHHHhcCCCcC
Confidence 36899998875 4444433 2 456777776 6777777777766542 23789999999841 1 234
Q ss_pred CeeEEEecccccccChhHHHHHHHHHHhcccCCcEEEEEEc-cCCC------C------------CCCCCcc-cCHHHHH
Q 024008 174 LFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMF-PISD------H------------VGGPPYK-VSVSDYE 233 (274)
Q Consensus 174 ~fD~v~~~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~-~~~~------~------------~~~~~~~-~~~~~~~ 233 (274)
.--++++-+++.+++++....+++.+...+.||..++.... .... . .....++ ....++.
T Consensus 170 ~pt~~iaEGLl~YL~~~~v~~ll~~I~~~~~~gS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~e~~ 249 (297)
T COG3315 170 RPTLWIAEGLLMYLPEEAVDRLLSRIAALSAPGSRVAFDYSLPGSLRDRLRRPAARKTMRGEDLDRGELVYFGDDPAEIE 249 (297)
T ss_pred CCeEEEeccccccCCHHHHHHHHHHHHHhCCCCceEEEeccccHHHHhcccchhhhhhccccccccccceeccCCHHHHH
Confidence 56688888999999999999999999999999888776542 1100 0 0112223 3589999
Q ss_pred HHHhcCCCcEEEEe
Q 024008 234 EVLQPMGFQAISIV 247 (274)
Q Consensus 234 ~~~~~~Gf~~~~~~ 247 (274)
.++.+.||......
T Consensus 250 ~~l~~~g~~~~~~~ 263 (297)
T COG3315 250 TWLAERGWRSTLNR 263 (297)
T ss_pred HHHHhcCEEEEecC
Confidence 99999999887763
No 318
>COG2933 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=94.32 E-value=0.13 Score=42.63 Aligned_cols=86 Identities=20% Similarity=0.134 Sum_probs=63.5
Q ss_pred CCCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCC-CCCeeEEEeccccc
Q 024008 107 LPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP-TELFDLIFDYTFFC 185 (274)
Q Consensus 107 ~~~~~vLDiG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~-~~~fD~v~~~~~~~ 185 (274)
.+++..+|+|+-.|+++..|.+++..|++||..+-+- .+-. .+.|+....|-++..| ..+.|-.+|-.+
T Consensus 210 ~~~M~avDLGAcPGGWTyqLVkr~m~V~aVDng~ma~-----sL~d---tg~v~h~r~DGfk~~P~r~~idWmVCDmV-- 279 (358)
T COG2933 210 APGMWAVDLGACPGGWTYQLVKRNMRVYAVDNGPMAQ-----SLMD---TGQVTHLREDGFKFRPTRSNIDWMVCDMV-- 279 (358)
T ss_pred cCCceeeecccCCCccchhhhhcceEEEEeccchhhh-----hhhc---ccceeeeeccCcccccCCCCCceEEeehh--
Confidence 3568999999999999999999999999999765321 1112 2568999999999766 567898887655
Q ss_pred ccChhHHHHHHHHHHhcccCC
Q 024008 186 AIEPEMRAAWAQKIKDFLKPD 206 (274)
Q Consensus 186 ~~~~~~~~~~l~~l~~~L~~g 206 (274)
+...++-..+..+|..|
T Consensus 280 ----EkP~rv~~li~~Wl~nG 296 (358)
T COG2933 280 ----EKPARVAALIAKWLVNG 296 (358)
T ss_pred ----cCcHHHHHHHHHHHHcc
Confidence 23345556677777644
No 319
>PRK10458 DNA cytosine methylase; Provisional
Probab=94.27 E-value=0.65 Score=42.42 Aligned_cols=128 Identities=11% Similarity=-0.024 Sum_probs=75.8
Q ss_pred CeEEEEcCCcchhHHHhhCCCC-eEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCC-----------------
Q 024008 110 GRALVPGCGTGYDVVAMASPER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP----------------- 171 (274)
Q Consensus 110 ~~vLDiG~G~G~~~~~l~~~~~-~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~----------------- 171 (274)
.+++|+-||.|.+...+...|. .+.++|+++.+.+--+.|.... +......+|+.+...
T Consensus 89 ~~~iDLFsGiGGl~lGfe~aG~~~v~a~Eid~~A~~TY~~N~~~~---p~~~~~~~DI~~i~~~~~~~~~~~~~~~~~~~ 165 (467)
T PRK10458 89 FRFIDLFAGIGGIRRGFEAIGGQCVFTSEWNKHAVRTYKANWYCD---PATHRFNEDIRDITLSHKEGVSDEEAAEHIRQ 165 (467)
T ss_pred ceEEEeCcCccHHHHHHHHcCCEEEEEEechHHHHHHHHHHcCCC---CccceeccChhhCccccccccchhhhhhhhhc
Confidence 5999999999999999988887 5678999999888888876321 112233444443210
Q ss_pred -CCCeeEEEecccccccCh-----------------hHHHHHHHHHH---hcccCCcEEEEEEccCCCCCCCCCcccCHH
Q 024008 172 -TELFDLIFDYTFFCAIEP-----------------EMRAAWAQKIK---DFLKPDGELITLMFPISDHVGGPPYKVSVS 230 (274)
Q Consensus 172 -~~~fD~v~~~~~~~~~~~-----------------~~~~~~l~~l~---~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~ 230 (274)
...+|+++.......++. +.+..++-.+. +..+|. +++.+....-.. ....-+..
T Consensus 166 ~~p~~DvL~gGpPCQ~FS~AG~~k~~~~gr~~g~~~d~rg~Lf~~~~rii~~~kPk--~fvlENV~gl~s--~~~g~~f~ 241 (467)
T PRK10458 166 HIPDHDVLLAGFPCQPFSLAGVSKKNSLGRAHGFECETQGTLFFDVARIIDAKRPA--IFVLENVKNLKS--HDKGKTFR 241 (467)
T ss_pred cCCCCCEEEEcCCCCccchhcccccccccccccccCCccccHHHHHHHHHHHhCCC--EEEEeCcHhhhc--ccccHHHH
Confidence 125798888766554421 11111223333 334444 444443222111 01112467
Q ss_pred HHHHHHhcCCCcEE
Q 024008 231 DYEEVLQPMGFQAI 244 (274)
Q Consensus 231 ~~~~~~~~~Gf~~~ 244 (274)
.+.+.|++.||.+.
T Consensus 242 ~i~~~L~~lGY~v~ 255 (467)
T PRK10458 242 IIMQTLDELGYDVA 255 (467)
T ss_pred HHHHHHHHcCCeEE
Confidence 88888999999975
No 320
>KOG2078 consensus tRNA modification enzyme [RNA processing and modification]
Probab=94.23 E-value=0.055 Score=47.78 Aligned_cols=64 Identities=13% Similarity=-0.075 Sum_probs=55.0
Q ss_pred CCCCCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcc-eEEEEcccCC
Q 024008 105 GALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKF-VSFLKADFFT 168 (274)
Q Consensus 105 ~~~~~~~vLDiG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~-v~~~~~d~~~ 168 (274)
...++..|.|+-||.|-.+..++..+++|++-|.++++++..+.+++.+.+.+. ++....|+..
T Consensus 246 ~fk~gevv~D~FaGvGPfa~Pa~kK~crV~aNDLNpesik~Lk~ni~lNkv~~~~iei~Nmda~~ 310 (495)
T KOG2078|consen 246 LFKPGEVVCDVFAGVGPFALPAAKKGCRVYANDLNPESIKWLKANIKLNKVDPSAIEIFNMDAKD 310 (495)
T ss_pred ccCCcchhhhhhcCcCccccchhhcCcEEEecCCCHHHHHHHHHhccccccchhheeeecccHHH
Confidence 456778999999999999999999999999999999999999999988776555 7776666544
No 321
>PRK11524 putative methyltransferase; Provisional
Probab=94.14 E-value=0.24 Score=42.19 Aligned_cols=80 Identities=18% Similarity=0.205 Sum_probs=52.4
Q ss_pred ceEEEEcccCC---CCCCCCeeEEEecccccc------c----Ch----hHHHHHHHHHHhcccCCcEEEEEEccCCCCC
Q 024008 158 FVSFLKADFFT---WCPTELFDLIFDYTFFCA------I----EP----EMRAAWAQKIKDFLKPDGELITLMFPISDHV 220 (274)
Q Consensus 158 ~v~~~~~d~~~---~~~~~~fD~v~~~~~~~~------~----~~----~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~~ 220 (274)
+..++.+|..+ ..++++||+|++...+.. . .. +-...++..+.++|+|||.+++.....
T Consensus 8 ~~~i~~gD~~~~l~~l~~~siDlIitDPPY~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~rvLK~~G~i~i~~~~~---- 83 (284)
T PRK11524 8 AKTIIHGDALTELKKIPSESVDLIFADPPYNIGKNFDGLIEAWKEDLFIDWLYEWIDECHRVLKKQGTMYIMNSTE---- 83 (284)
T ss_pred CCEEEeccHHHHHHhcccCcccEEEECCCcccccccccccccccHHHHHHHHHHHHHHHHHHhCCCcEEEEEcCch----
Confidence 45788899887 456789999999877642 0 00 123578899999999999999864111
Q ss_pred CCCCcccCHHHHHHHHhcCCCcEEEEeec
Q 024008 221 GGPPYKVSVSDYEEVLQPMGFQAISIVDN 249 (274)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~Gf~~~~~~~~ 249 (274)
.... ..++...||......-+
T Consensus 84 -------~~~~-~~~~~~~~f~~~~~iiW 104 (284)
T PRK11524 84 -------NMPF-IDLYCRKLFTIKSRIVW 104 (284)
T ss_pred -------hhhH-HHHHHhcCcceEEEEEE
Confidence 1112 34455568876664443
No 322
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=94.13 E-value=0.095 Score=46.69 Aligned_cols=103 Identities=16% Similarity=0.138 Sum_probs=65.1
Q ss_pred CCCCeEEEEcCCc-chhHHHhhC-CCC-eEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcc-cCC----CCCCCCeeEE
Q 024008 107 LPKGRALVPGCGT-GYDVVAMAS-PER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKAD-FFT----WCPTELFDLI 178 (274)
Q Consensus 107 ~~~~~vLDiG~G~-G~~~~~l~~-~~~-~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d-~~~----~~~~~~fD~v 178 (274)
.++.+||..|||. |..+..+++ .|. +++++|.+++..+.+++.... ..+.....+ +.. ......+|+|
T Consensus 183 ~~g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~~~~~~~~~~----~vi~~~~~~~~~~~l~~~~~~~~~D~v 258 (386)
T cd08283 183 KPGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERLEMARSHLGA----ETINFEEVDDVVEALRELTGGRGPDVC 258 (386)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCCc----EEEcCCcchHHHHHHHHHcCCCCCCEE
Confidence 3457999999988 888888877 666 699999999999988876311 112222221 111 2233468999
Q ss_pred Eeccccc-----------cc--ChhHHHHHHHHHHhcccCCcEEEEEE
Q 024008 179 FDYTFFC-----------AI--EPEMRAAWAQKIKDFLKPDGELITLM 213 (274)
Q Consensus 179 ~~~~~~~-----------~~--~~~~~~~~l~~l~~~L~~gG~l~~~~ 213 (274)
+..-.-. +. +..+....+..+.++++++|.++...
T Consensus 259 ld~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~g 306 (386)
T cd08283 259 IDAVGMEAHGSPLHKAEQALLKLETDRPDALREAIQAVRKGGTVSIIG 306 (386)
T ss_pred EECCCCcccccccccccccccccccCchHHHHHHHHHhccCCEEEEEc
Confidence 8642110 00 00112346788999999999998764
No 323
>PF11312 DUF3115: Protein of unknown function (DUF3115); InterPro: IPR021463 This eukaryotic family of proteins has no known function.
Probab=94.11 E-value=0.13 Score=43.84 Aligned_cols=108 Identities=22% Similarity=0.269 Sum_probs=71.7
Q ss_pred CeEEEEcCCcchhHHHhhC----------C------------CCeEEEEeCCh--HHHHHHHHHhhcC------------
Q 024008 110 GRALVPGCGTGYDVVAMAS----------P------------ERYVVGLEISD--IAIKKAEELSSSL------------ 153 (274)
Q Consensus 110 ~~vLDiG~G~G~~~~~l~~----------~------------~~~v~~iD~s~--~~~~~a~~~~~~~------------ 153 (274)
.+||.||.|.|.-..+++. . ...++.||+.+ .++......+...
T Consensus 88 ~~VlCIGGGAGAElVAlAa~~~~~~~~~~s~~~~~~~~~~~~~l~itlvDiAdWs~VV~~L~~~i~s~p~~sk~a~~~~~ 167 (315)
T PF11312_consen 88 LRVLCIGGGAGAELVALAAAFRTRSSEFLSKSPSGVSLSSPPSLSITLVDIADWSSVVDRLTTTITSPPPLSKYASAANW 167 (315)
T ss_pred ceEEEECCChHHHHHHHHHHHhhcccccCCcccccccccCCCcceEEEEEecChHHHHHHHHHhccCCCCcccccccccc
Confidence 6999999999876655442 0 14899999864 5566655554433
Q ss_pred C----CCcceEEEEcccCCCCCC--------CCeeEEEeccccccc---ChhHHHHHHHHHHhcccCCcEEEEEEccCC
Q 024008 154 P----NAKFVSFLKADFFTWCPT--------ELFDLIFDYTFFCAI---EPEMRAAWAQKIKDFLKPDGELITLMFPIS 217 (274)
Q Consensus 154 ~----~~~~v~~~~~d~~~~~~~--------~~fD~v~~~~~~~~~---~~~~~~~~l~~l~~~L~~gG~l~~~~~~~~ 217 (274)
. -.-+++|.+.|+.....+ ...++|....++.-+ ......+++.++...++||..++|++.+..
T Consensus 168 ~~~~~~~~~~~F~~~DvL~~~~~~l~~ll~~~~~~LITLlFTlNELfs~s~~kTt~FLl~Lt~~~~~GslLLVvDSpGS 246 (315)
T PF11312_consen 168 PLIEPDRFNVSFTQQDVLSLSEDDLKSLLGPPSPDLITLLFTLNELFSTSISKTTKFLLRLTDICPPGSLLLVVDSPGS 246 (315)
T ss_pred ccCCccceeeeEEecccccCChHHHHHHhccchhHHHHHHHHHHHHHhcChHHHHHHHHHHHhhcCCCcEEEEEcCCCC
Confidence 0 112588999999874321 135666554444332 123456899999999999999999886654
No 324
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=93.95 E-value=0.18 Score=44.33 Aligned_cols=97 Identities=19% Similarity=0.177 Sum_probs=63.0
Q ss_pred CCCeEEEEcCCc-chhHHHhhC-CCC-eEEEEeCChHHHHHHHHHhhcCCCCcceEEEEc-ccCC----CCCCCCeeEEE
Q 024008 108 PKGRALVPGCGT-GYDVVAMAS-PER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKA-DFFT----WCPTELFDLIF 179 (274)
Q Consensus 108 ~~~~vLDiG~G~-G~~~~~l~~-~~~-~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~-d~~~----~~~~~~fD~v~ 179 (274)
++.+|+=+|||. |..+..+++ .|+ +|+++|.+++.++.|++..... .+..... +... ......+|+++
T Consensus 168 ~~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~~----~~~~~~~~~~~~~~~~~t~g~g~D~vi 243 (350)
T COG1063 168 PGGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGAD----VVVNPSEDDAGAEILELTGGRGADVVI 243 (350)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCCCe----EeecCccccHHHHHHHHhCCCCCCEEE
Confidence 345899999997 444455555 554 8999999999999999855322 1111111 1111 11123699998
Q ss_pred ecccccccChhHHHHHHHHHHhcccCCcEEEEEEccC
Q 024008 180 DYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPI 216 (274)
Q Consensus 180 ~~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~~~ 216 (274)
-.-- ....+..+.+++++||.+++.....
T Consensus 244 e~~G--------~~~~~~~ai~~~r~gG~v~~vGv~~ 272 (350)
T COG1063 244 EAVG--------SPPALDQALEALRPGGTVVVVGVYG 272 (350)
T ss_pred ECCC--------CHHHHHHHHHHhcCCCEEEEEeccC
Confidence 4322 1346789999999999988766553
No 325
>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length. The function of this family is unknown.
Probab=93.76 E-value=1.4 Score=35.58 Aligned_cols=84 Identities=12% Similarity=0.058 Sum_probs=57.1
Q ss_pred cHHHHHHHhcCCCCCCeEEEEcCCcch--hHHHhhC----CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC
Q 024008 95 APIIVHLHQSGALPKGRALVPGCGTGY--DVVAMAS----PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT 168 (274)
Q Consensus 95 ~~~~~~~~~~~~~~~~~vLDiG~G~G~--~~~~l~~----~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~ 168 (274)
.+++.++.. +.....++++.|+-|. .++.|+- .|.++++|-.++......++.+...+.++-++|+.++..+
T Consensus 30 aEfISAlAA--G~nAkliVe~~s~g~~~~ttiaLaaAAr~TgGR~vCIvp~~~~~~~~~~~l~~~~~~~~vEfvvg~~~e 107 (218)
T PF07279_consen 30 AEFISALAA--GWNAKLIVEAWSSGGAISTTIALAAAARQTGGRHVCIVPDEQSLSEYKKALGEAGLSDVVEFVVGEAPE 107 (218)
T ss_pred HHHHHHHhc--cccceEEEEEecCCCchHhHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHhhccccccceEEecCCHH
Confidence 444444443 4445789999766443 2333332 6789999999998888888888877777778999988543
Q ss_pred --CCCCCCeeEEEe
Q 024008 169 --WCPTELFDLIFD 180 (274)
Q Consensus 169 --~~~~~~fD~v~~ 180 (274)
...-...|+++.
T Consensus 108 ~~~~~~~~iDF~vV 121 (218)
T PF07279_consen 108 EVMPGLKGIDFVVV 121 (218)
T ss_pred HHHhhccCCCEEEE
Confidence 233457888883
No 326
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=93.35 E-value=0.014 Score=43.12 Aligned_cols=84 Identities=17% Similarity=0.176 Sum_probs=57.9
Q ss_pred CcchhHHHhhC-CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccC---C----CCCCCCeeEEEecccccccCh
Q 024008 118 GTGYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFF---T----WCPTELFDLIFDYTFFCAIEP 189 (274)
Q Consensus 118 G~G~~~~~l~~-~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~---~----~~~~~~fD~v~~~~~~~~~~~ 189 (274)
|.|..+..+++ .|.+|+++|.++...+.+++.-. ..++..+-. + ......+|+|+..-. .
T Consensus 1 ~vG~~a~q~ak~~G~~vi~~~~~~~k~~~~~~~Ga-------~~~~~~~~~~~~~~i~~~~~~~~~d~vid~~g-----~ 68 (130)
T PF00107_consen 1 GVGLMAIQLAKAMGAKVIATDRSEEKLELAKELGA-------DHVIDYSDDDFVEQIRELTGGRGVDVVIDCVG-----S 68 (130)
T ss_dssp HHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHTTE-------SEEEETTTSSHHHHHHHHTTTSSEEEEEESSS-----S
T ss_pred ChHHHHHHHHHHcCCEEEEEECCHHHHHHHHhhcc-------cccccccccccccccccccccccceEEEEecC-----c
Confidence 45778888887 78999999999999999887531 112222111 1 233357999984322 0
Q ss_pred hHHHHHHHHHHhcccCCcEEEEEEccC
Q 024008 190 EMRAAWAQKIKDFLKPDGELITLMFPI 216 (274)
Q Consensus 190 ~~~~~~l~~l~~~L~~gG~l~~~~~~~ 216 (274)
...++...++++++|.++++....
T Consensus 69 ---~~~~~~~~~~l~~~G~~v~vg~~~ 92 (130)
T PF00107_consen 69 ---GDTLQEAIKLLRPGGRIVVVGVYG 92 (130)
T ss_dssp ---HHHHHHHHHHEEEEEEEEEESSTS
T ss_pred ---HHHHHHHHHHhccCCEEEEEEccC
Confidence 246788999999999999887655
No 327
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=93.33 E-value=0.37 Score=42.08 Aligned_cols=96 Identities=20% Similarity=0.286 Sum_probs=57.1
Q ss_pred CCCCeEEEEcCC-cchhHHHhhC-CCC-eEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC-CCCCCCeeEEEecc
Q 024008 107 LPKGRALVPGCG-TGYDVVAMAS-PER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT-WCPTELFDLIFDYT 182 (274)
Q Consensus 107 ~~~~~vLDiG~G-~G~~~~~l~~-~~~-~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~~~~~fD~v~~~~ 182 (274)
.++.+||=.||| .|..+..+++ .|+ +|+++|.+++.++.+++.-.. .-+.....++.+ ....+.+|+|+..-
T Consensus 168 ~~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~~lGa~----~vi~~~~~~~~~~~~~~g~~D~vid~~ 243 (343)
T PRK09880 168 LQGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLAREMGAD----KLVNPQNDDLDHYKAEKGYFDVSFEVS 243 (343)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHHcCCc----EEecCCcccHHHHhccCCCCCEEEECC
Confidence 356788888874 2334445555 677 699999999999888764211 001111112211 11123589988431
Q ss_pred cccccChhHHHHHHHHHHhcccCCcEEEEEEc
Q 024008 183 FFCAIEPEMRAAWAQKIKDFLKPDGELITLMF 214 (274)
Q Consensus 183 ~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~ 214 (274)
.. ...+....++|++||.++....
T Consensus 244 --G~------~~~~~~~~~~l~~~G~iv~~G~ 267 (343)
T PRK09880 244 --GH------PSSINTCLEVTRAKGVMVQVGM 267 (343)
T ss_pred --CC------HHHHHHHHHHhhcCCEEEEEcc
Confidence 11 1345678889999999988754
No 328
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=93.28 E-value=0.24 Score=42.86 Aligned_cols=96 Identities=23% Similarity=0.318 Sum_probs=59.7
Q ss_pred CCCCeEEEEcCC-cchhHHHhhC-CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccC---CCCCCCCeeEEEec
Q 024008 107 LPKGRALVPGCG-TGYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFF---TWCPTELFDLIFDY 181 (274)
Q Consensus 107 ~~~~~vLDiG~G-~G~~~~~l~~-~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~---~~~~~~~fD~v~~~ 181 (274)
.++.+||..|+| .|..+..+++ .|.++++++.+++..+.+++.- ...-+.....+.. .......+|+++..
T Consensus 164 ~~~~~vli~g~g~vG~~~~~la~~~G~~V~~~~~s~~~~~~~~~~g----~~~~~~~~~~~~~~~~~~~~~~~~D~vid~ 239 (338)
T cd08254 164 KPGETVLVIGLGGLGLNAVQIAKAMGAAVIAVDIKEEKLELAKELG----ADEVLNSLDDSPKDKKAAGLGGGFDVIFDF 239 (338)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHhC----CCEEEcCCCcCHHHHHHHhcCCCceEEEEC
Confidence 345688888876 4677777777 7889999999998888875532 1100000000100 11234579988843
Q ss_pred ccccccChhHHHHHHHHHHhcccCCcEEEEEEc
Q 024008 182 TFFCAIEPEMRAAWAQKIKDFLKPDGELITLMF 214 (274)
Q Consensus 182 ~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~ 214 (274)
... ...+..+.++|+++|.++....
T Consensus 240 ~g~--------~~~~~~~~~~l~~~G~~v~~g~ 264 (338)
T cd08254 240 VGT--------QPTFEDAQKAVKPGGRIVVVGL 264 (338)
T ss_pred CCC--------HHHHHHHHHHhhcCCEEEEECC
Confidence 211 2356788999999999987654
No 329
>KOG2918 consensus Carboxymethyl transferase [Posttranslational modification, protein turnover, chaperones]
Probab=93.19 E-value=4.7 Score=34.55 Aligned_cols=153 Identities=12% Similarity=0.076 Sum_probs=92.8
Q ss_pred HHHHHHhcCCCCCCeEEEEcCCcchhHHHhhCCC----CeEEEEeCChHHHHHHHHHhhcCC------------------
Q 024008 97 IIVHLHQSGALPKGRALVPGCGTGYDVVAMASPE----RYVVGLEISDIAIKKAEELSSSLP------------------ 154 (274)
Q Consensus 97 ~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~----~~v~~iD~s~~~~~~a~~~~~~~~------------------ 154 (274)
.+..++.. ......|+.+|||.-.....+...+ ..++=||+++....+.........
T Consensus 77 ~v~~Fl~~-~~~~~qivnLGcG~D~l~frL~s~~~~~~~~fievDfp~~~~rKi~ik~~~~~s~~l~~~~~eD~~~~s~~ 155 (335)
T KOG2918|consen 77 AVRAFLEQ-TDGKKQIVNLGAGFDTLYFRLLSSGELDRVKFIEVDFPEVVERKISIKRKPELSSILLGLHDEDVVDLSGT 155 (335)
T ss_pred HHHHHHHh-cCCceEEEEcCCCccchhhhhhccCCCCcceEEEecCcHHHHHHHhhcccCchhhhhhccccccccccCcc
Confidence 34555554 2233689999999988888887754 367777877665555511111110
Q ss_pred --CCcceEEEEcccCCC-----------CCCCCeeEEEecccccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCC--
Q 024008 155 --NAKFVSFLKADFFTW-----------CPTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDH-- 219 (274)
Q Consensus 155 --~~~~v~~~~~d~~~~-----------~~~~~fD~v~~~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~-- 219 (274)
.+++..++.+|+.+. ...+-.-++++-.++.+++++....++.-+.........++..-..+.+.
T Consensus 156 ~l~s~~Y~~~g~DLrdl~ele~kL~~c~~d~~lpTi~iaEcvLvYM~pe~S~~Li~w~~~~F~~a~fv~YEQi~~~D~Fg 235 (335)
T KOG2918|consen 156 DLHSGRYHLIGCDLRDLNELEEKLKKCGLDTNLPTIFIAECVLVYMEPEESANLIKWAASKFENAHFVNYEQINPNDRFG 235 (335)
T ss_pred eeccCceeeeccchhhhHHHHHHHHhccCCcCcceeehhhhhheeccHHHHHHHHHHHHHhCCcccEEEEeccCCCChHH
Confidence 012344455555531 01223455666678888988877788888887777666666554444332
Q ss_pred -------------CCCCCcccCHHHHHHHHhcCCCcEEEEeecc
Q 024008 220 -------------VGGPPYKVSVSDYEEVLQPMGFQAISIVDNK 250 (274)
Q Consensus 220 -------------~~~~~~~~~~~~~~~~~~~~Gf~~~~~~~~~ 250 (274)
..|.....+.+...+-+.++||.-+.+.+--
T Consensus 236 ~vM~~nlk~r~~~L~gle~y~s~Esq~~Rf~~~Gw~~v~a~Dm~ 279 (335)
T KOG2918|consen 236 KVMLANLKRRGCPLHGLETYNSIESQRSRFLKAGWEYVIAVDMN 279 (335)
T ss_pred HHHHHHHHhcCCCCchhhhcccHHHHHHHHHhcCCceeehhhHH
Confidence 1112222488888889999999988877643
No 330
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=93.16 E-value=1.1 Score=42.53 Aligned_cols=90 Identities=10% Similarity=-0.030 Sum_probs=59.1
Q ss_pred CeEEEEcCCcchhHHHh----hCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCC-----CCCCCeeEEEe
Q 024008 110 GRALVPGCGTGYDVVAM----ASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW-----CPTELFDLIFD 180 (274)
Q Consensus 110 ~~vLDiG~G~G~~~~~l----~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-----~~~~~fD~v~~ 180 (274)
.+|+=+|+|. .+..+ .+.+..++.+|.+++.++.+++. ....+.+|..+. ..-++.|++++
T Consensus 401 ~~vII~G~Gr--~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~--------g~~v~~GDat~~~~L~~agi~~A~~vv~ 470 (601)
T PRK03659 401 PQVIIVGFGR--FGQVIGRLLMANKMRITVLERDISAVNLMRKY--------GYKVYYGDATQLELLRAAGAEKAEAIVI 470 (601)
T ss_pred CCEEEecCch--HHHHHHHHHHhCCCCEEEEECCHHHHHHHHhC--------CCeEEEeeCCCHHHHHhcCCccCCEEEE
Confidence 5677776654 44444 34788999999999999988652 266899999872 22346787774
Q ss_pred cccccccChhHHHHHHHHHHhcccCCcEEEEEEc
Q 024008 181 YTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMF 214 (274)
Q Consensus 181 ~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~ 214 (274)
. .+++.....+-...+.+.|...++....
T Consensus 471 ~-----~~d~~~n~~i~~~~r~~~p~~~IiaRa~ 499 (601)
T PRK03659 471 T-----CNEPEDTMKIVELCQQHFPHLHILARAR 499 (601)
T ss_pred E-----eCCHHHHHHHHHHHHHHCCCCeEEEEeC
Confidence 2 2333333344455666788888887663
No 331
>KOG2539 consensus Mitochondrial/chloroplast ribosome small subunit component [Translation, ribosomal structure and biogenesis]
Probab=93.02 E-value=0.19 Score=45.12 Aligned_cols=108 Identities=12% Similarity=-0.023 Sum_probs=69.1
Q ss_pred CCCeEEEEcCCcchhHHHhhC--C--CCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcc--cCC----CCCCCCeeE
Q 024008 108 PKGRALVPGCGTGYDVVAMAS--P--ERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKAD--FFT----WCPTELFDL 177 (274)
Q Consensus 108 ~~~~vLDiG~G~G~~~~~l~~--~--~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d--~~~----~~~~~~fD~ 177 (274)
.+..++|+|.|.|.-...+.. . ...++.||.+..+......+..... ..-..+... +.. ....+.||+
T Consensus 200 ~pd~~~dfgsg~~~~~~a~~~lwr~t~~~~~~Vdrs~~~~~~~e~~lr~~~--~~g~~~v~~~~~~r~~~pi~~~~~yDl 277 (491)
T KOG2539|consen 200 RPDLLRDFGSGAGNGGWAAVLLWRQTKREYSLVDRSRAMLKQSEKNLRDGS--HIGEPIVRKLVFHRQRLPIDIKNGYDL 277 (491)
T ss_pred ChHHHHHHHhhcccchhhhhhhcccccceeEeeccchHHHHHHHHhhcChh--hcCchhccccchhcccCCCCcccceee
Confidence 346888999887765544433 2 3479999999999999888876511 111111111 111 233467999
Q ss_pred EEecccccccCh-hHH-HHHHHHHHhcccCCcEEEEEEccCC
Q 024008 178 IFDYTFFCAIEP-EMR-AAWAQKIKDFLKPDGELITLMFPIS 217 (274)
Q Consensus 178 v~~~~~~~~~~~-~~~-~~~l~~l~~~L~~gG~l~~~~~~~~ 217 (274)
|++.+.++++.. ..+ ...-..+.+...+|+.++++.-+..
T Consensus 278 vi~ah~l~~~~s~~~R~~v~~s~~r~~~r~g~~lViIe~g~~ 319 (491)
T KOG2539|consen 278 VICAHKLHELGSKFSRLDVPESLWRKTDRSGYFLVIIEKGTT 319 (491)
T ss_pred EEeeeeeeccCCchhhhhhhHHHHHhccCCCceEEEEecCCc
Confidence 999999988743 222 2333556677788999988876543
No 332
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=92.86 E-value=0.44 Score=39.49 Aligned_cols=96 Identities=20% Similarity=0.225 Sum_probs=59.2
Q ss_pred CCCCeEEEEcCCc-chhHHHhhC-CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC---CCCCCCeeEEEec
Q 024008 107 LPKGRALVPGCGT-GYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT---WCPTELFDLIFDY 181 (274)
Q Consensus 107 ~~~~~vLDiG~G~-G~~~~~l~~-~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~---~~~~~~fD~v~~~ 181 (274)
.++.+||..|+|. |..+..+++ .|.++++++.+++..+.++..-... -+.....+... ....+.+|+++..
T Consensus 133 ~~~~~vli~g~~~~G~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~g~~~----~~~~~~~~~~~~~~~~~~~~~d~vi~~ 208 (271)
T cd05188 133 KPGDTVLVLGAGGVGLLAAQLAKAAGARVIVTDRSDEKLELAKELGADH----VIDYKEEDLEEELRLTGGGGADVVIDA 208 (271)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHhCCce----eccCCcCCHHHHHHHhcCCCCCEEEEC
Confidence 4567999999985 666666666 7889999999988877775542110 01111111100 1123579999853
Q ss_pred ccccccChhHHHHHHHHHHhcccCCcEEEEEEc
Q 024008 182 TFFCAIEPEMRAAWAQKIKDFLKPDGELITLMF 214 (274)
Q Consensus 182 ~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~ 214 (274)
..- ...+..+.+.++++|.++....
T Consensus 209 ~~~--------~~~~~~~~~~l~~~G~~v~~~~ 233 (271)
T cd05188 209 VGG--------PETLAQALRLLRPGGRIVVVGG 233 (271)
T ss_pred CCC--------HHHHHHHHHhcccCCEEEEEcc
Confidence 221 0245677888999999887653
No 333
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=91.80 E-value=0.57 Score=41.11 Aligned_cols=96 Identities=27% Similarity=0.239 Sum_probs=56.3
Q ss_pred CCCCeEEEEcCCc-chhHHHhhC-CCCeEEEEeC---ChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCeeEEEec
Q 024008 107 LPKGRALVPGCGT-GYDVVAMAS-PERYVVGLEI---SDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDY 181 (274)
Q Consensus 107 ~~~~~vLDiG~G~-G~~~~~l~~-~~~~v~~iD~---s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~ 181 (274)
.++.+||=+|+|. |..+..+++ .|+++++++. ++...+.+++.-.. .+.....+..+......+|+|+..
T Consensus 171 ~~g~~vlI~G~G~vG~~a~q~ak~~G~~vi~~~~~~~~~~~~~~~~~~Ga~-----~v~~~~~~~~~~~~~~~~d~vid~ 245 (355)
T cd08230 171 WNPRRALVLGAGPIGLLAALLLRLRGFEVYVLNRRDPPDPKADIVEELGAT-----YVNSSKTPVAEVKLVGEFDLIIEA 245 (355)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCE-----EecCCccchhhhhhcCCCCEEEEC
Confidence 3567898888753 444555555 7789999986 67777777643211 111111111110112468988843
Q ss_pred ccccccChhHHHHHHHHHHhcccCCcEEEEEEcc
Q 024008 182 TFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFP 215 (274)
Q Consensus 182 ~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~~ 215 (274)
-. . ...+....+.|++||.+++....
T Consensus 246 ~g-----~---~~~~~~~~~~l~~~G~~v~~G~~ 271 (355)
T cd08230 246 TG-----V---PPLAFEALPALAPNGVVILFGVP 271 (355)
T ss_pred cC-----C---HHHHHHHHHHccCCcEEEEEecC
Confidence 21 0 12567888999999998876543
No 334
>PF03686 UPF0146: Uncharacterised protein family (UPF0146); InterPro: IPR005353 The function of this family of proteins is unknown.; PDB: 2K4M_A.
Probab=91.68 E-value=0.48 Score=34.88 Aligned_cols=89 Identities=18% Similarity=0.100 Sum_probs=46.9
Q ss_pred CCeEEEEcCCcchhH-HHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCC--CCCeeEEEeccccc
Q 024008 109 KGRALVPGCGTGYDV-VAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP--TELFDLIFDYTFFC 185 (274)
Q Consensus 109 ~~~vLDiG~G~G~~~-~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~--~~~fD~v~~~~~~~ 185 (274)
.++|+|+|-|.=... ..|.+.|..|+++|+.+. .++ ..++++..|++++.. -...|+|++...-.
T Consensus 14 ~~kiVEVGiG~~~~vA~~L~~~G~dV~~tDi~~~-------~a~-----~g~~~v~DDif~P~l~iY~~a~lIYSiRPP~ 81 (127)
T PF03686_consen 14 YGKIVEVGIGFNPEVAKKLKERGFDVIATDINPR-------KAP-----EGVNFVVDDIFNPNLEIYEGADLIYSIRPPP 81 (127)
T ss_dssp SSEEEEET-TT--HHHHHHHHHS-EEEEE-SS-S----------------STTEE---SSS--HHHHTTEEEEEEES--T
T ss_pred CCcEEEECcCCCHHHHHHHHHcCCcEEEEECccc-------ccc-----cCcceeeecccCCCHHHhcCCcEEEEeCCCh
Confidence 459999988876544 455558899999999887 222 237899999998543 35789999765433
Q ss_pred ccChhHHHHHHHHHHhcccCCcEEEEEEccC
Q 024008 186 AIEPEMRAAWAQKIKDFLKPDGELITLMFPI 216 (274)
Q Consensus 186 ~~~~~~~~~~l~~l~~~L~~gG~l~~~~~~~ 216 (274)
++...+-++.+.+ |.-+++..++.
T Consensus 82 -----El~~~il~lA~~v--~adlii~pL~~ 105 (127)
T PF03686_consen 82 -----ELQPPILELAKKV--GADLIIRPLGG 105 (127)
T ss_dssp -----TSHHHHHHHHHHH--T-EEEEE-BTT
T ss_pred -----HHhHHHHHHHHHh--CCCEEEECCCC
Confidence 2233344444433 45566655443
No 335
>KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification]
Probab=91.67 E-value=0.51 Score=41.33 Aligned_cols=40 Identities=20% Similarity=0.173 Sum_probs=34.2
Q ss_pred CeEEEEcCCcchhHHHhhC-CCCeEEEEeCChHHHHHHHHH
Q 024008 110 GRALVPGCGTGYDVVAMAS-PERYVVGLEISDIAIKKAEEL 149 (274)
Q Consensus 110 ~~vLDiG~G~G~~~~~l~~-~~~~v~~iD~s~~~~~~a~~~ 149 (274)
..|+|+|.|.|+++..+.- -|..|.+||-|....+.|++.
T Consensus 155 ~~vvD~GaG~G~LSr~lSl~y~lsV~aIegsq~~~~ra~rL 195 (476)
T KOG2651|consen 155 DQVVDVGAGQGHLSRFLSLGYGLSVKAIEGSQRLVERAQRL 195 (476)
T ss_pred CeeEEcCCCchHHHHHHhhccCceEEEeccchHHHHHHHHH
Confidence 6899999999999998876 688999999997777776553
No 336
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=91.60 E-value=2.4 Score=38.49 Aligned_cols=65 Identities=17% Similarity=0.012 Sum_probs=46.2
Q ss_pred CCCeEEEEcCCcchhHHHhhC----CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCC-----CCCCCeeEE
Q 024008 108 PKGRALVPGCGTGYDVVAMAS----PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW-----CPTELFDLI 178 (274)
Q Consensus 108 ~~~~vLDiG~G~G~~~~~l~~----~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-----~~~~~fD~v 178 (274)
...+++=+|+ |..+..+++ .+..++.+|.+++.++.+++.. ..+.++.+|..+. ..-..+|.|
T Consensus 230 ~~~~iiIiG~--G~~g~~l~~~L~~~~~~v~vid~~~~~~~~~~~~~------~~~~~i~gd~~~~~~L~~~~~~~a~~v 301 (453)
T PRK09496 230 PVKRVMIVGG--GNIGYYLAKLLEKEGYSVKLIERDPERAEELAEEL------PNTLVLHGDGTDQELLEEEGIDEADAF 301 (453)
T ss_pred CCCEEEEECC--CHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHC------CCCeEEECCCCCHHHHHhcCCccCCEE
Confidence 3478888888 445544444 6889999999999888877654 2367888998762 223578888
Q ss_pred Ee
Q 024008 179 FD 180 (274)
Q Consensus 179 ~~ 180 (274)
++
T Consensus 302 i~ 303 (453)
T PRK09496 302 IA 303 (453)
T ss_pred EE
Confidence 75
No 337
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=91.26 E-value=1 Score=42.37 Aligned_cols=107 Identities=15% Similarity=0.070 Sum_probs=64.4
Q ss_pred CeEEEEcCCcchhHHHhh----CCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCC-----CCCCCeeEEEe
Q 024008 110 GRALVPGCGTGYDVVAMA----SPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW-----CPTELFDLIFD 180 (274)
Q Consensus 110 ~~vLDiG~G~G~~~~~l~----~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-----~~~~~fD~v~~ 180 (274)
.+++=+|||. .+..++ +.+..++.+|.+++.++.+++. ....+.+|..+. ..-+++|.+++
T Consensus 418 ~hiiI~G~G~--~G~~la~~L~~~g~~vvvId~d~~~~~~~~~~--------g~~~i~GD~~~~~~L~~a~i~~a~~viv 487 (558)
T PRK10669 418 NHALLVGYGR--VGSLLGEKLLAAGIPLVVIETSRTRVDELRER--------GIRAVLGNAANEEIMQLAHLDCARWLLL 487 (558)
T ss_pred CCEEEECCCh--HHHHHHHHHHHCCCCEEEEECCHHHHHHHHHC--------CCeEEEcCCCCHHHHHhcCccccCEEEE
Confidence 5777777765 444443 4788999999999988888642 267899999872 22357886653
Q ss_pred cccccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcEEE
Q 024008 181 YTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAIS 245 (274)
Q Consensus 181 ~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gf~~~~ 245 (274)
. .+++.....+-...+...|+..++... +..+-.+.+++.|-+.+-
T Consensus 488 ~-----~~~~~~~~~iv~~~~~~~~~~~iiar~--------------~~~~~~~~l~~~Gad~vv 533 (558)
T PRK10669 488 T-----IPNGYEAGEIVASAREKRPDIEIIARA--------------HYDDEVAYITERGANQVV 533 (558)
T ss_pred E-----cCChHHHHHHHHHHHHHCCCCeEEEEE--------------CCHHHHHHHHHcCCCEEE
Confidence 2 222222222223334456777776654 122344456677766544
No 338
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=90.70 E-value=2.7 Score=40.06 Aligned_cols=92 Identities=12% Similarity=0.081 Sum_probs=59.6
Q ss_pred CCeEEEEcCCcchh-H-HHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCC-----CCCCCeeEEEec
Q 024008 109 KGRALVPGCGTGYD-V-VAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW-----CPTELFDLIFDY 181 (274)
Q Consensus 109 ~~~vLDiG~G~G~~-~-~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-----~~~~~fD~v~~~ 181 (274)
..+|+=+|||.=.. . ..+.+.+..++.+|.+++.++.+++. ....+.+|..+. ..-++.|++++.
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~--------g~~v~~GDat~~~~L~~agi~~A~~vvv~ 471 (621)
T PRK03562 400 QPRVIIAGFGRFGQIVGRLLLSSGVKMTVLDHDPDHIETLRKF--------GMKVFYGDATRMDLLESAGAAKAEVLINA 471 (621)
T ss_pred cCcEEEEecChHHHHHHHHHHhCCCCEEEEECCHHHHHHHHhc--------CCeEEEEeCCCHHHHHhcCCCcCCEEEEE
Confidence 36788888875322 2 23444788999999999999988652 256899999872 223467877742
Q ss_pred ccccccChhHHHHHHHHHHhcccCCcEEEEEE
Q 024008 182 TFFCAIEPEMRAAWAQKIKDFLKPDGELITLM 213 (274)
Q Consensus 182 ~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~ 213 (274)
.++++....+-...+.+.|+-.++...
T Consensus 472 -----~~d~~~n~~i~~~ar~~~p~~~iiaRa 498 (621)
T PRK03562 472 -----IDDPQTSLQLVELVKEHFPHLQIIARA 498 (621)
T ss_pred -----eCCHHHHHHHHHHHHHhCCCCeEEEEE
Confidence 233333344445556667777766654
No 339
>TIGR00497 hsdM type I restriction system adenine methylase (hsdM). Function: methylation of specific adenine residues; required for both restriction and modification activities. The ECOR124/3 I enzyme recognizes 5'GAA(N7)RTCG. for E.coli see (J. Mol. Biol. 257: 960-969 (1996)).
Probab=90.68 E-value=2.6 Score=39.10 Aligned_cols=107 Identities=14% Similarity=0.136 Sum_probs=68.7
Q ss_pred CCCeEEEEcCCcchhHHHhhC------CCCeEEEEeCChHHHHHHHHHhhcCCCC-cceEEEEcccCC-C--CCCCCeeE
Q 024008 108 PKGRALVPGCGTGYDVVAMAS------PERYVVGLEISDIAIKKAEELSSSLPNA-KFVSFLKADFFT-W--CPTELFDL 177 (274)
Q Consensus 108 ~~~~vLDiG~G~G~~~~~l~~------~~~~v~~iD~s~~~~~~a~~~~~~~~~~-~~v~~~~~d~~~-~--~~~~~fD~ 177 (274)
+...|.|.-||+|..+....+ ....++|.+..+.+...++.+..-.+.. +......+|-.. + ....+||.
T Consensus 217 p~~~~~Dp~~Gsg~~L~~~~~~~~~~qe~~~~~gqe~~~~~~~~a~mnm~l~~~~~~t~~~~~~dtl~~~d~~~~~~~D~ 296 (501)
T TIGR00497 217 TVDDVYDMACGSGSLLLQVIKVLGEKTSLVSYYGQEINHTTYNLCRMNMILHNIDYANFNIINADTLTTKEWENENGFEV 296 (501)
T ss_pred CCCcccccccchHHHHHHHHHHhcccccceeEEEEeCchHHHHHHHHHHHHcCCCccccCcccCCcCCCccccccccCCE
Confidence 446899999999999865432 1236999999999999999885433321 123333444333 1 12356888
Q ss_pred EEecccccc-c-----C---------------h--hHHHHHHHHHHhcccCCcEEEEEEc
Q 024008 178 IFDYTFFCA-I-----E---------------P--EMRAAWAQKIKDFLKPDGELITLMF 214 (274)
Q Consensus 178 v~~~~~~~~-~-----~---------------~--~~~~~~l~~l~~~L~~gG~l~~~~~ 214 (274)
|+++..+.. + + + +.-..++.++...|++||...++..
T Consensus 297 v~~NpPf~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~afi~h~~~~L~~gG~~aiI~~ 356 (501)
T TIGR00497 297 VVSNPPYSISWAGDKKSNLVSDVRFKDAGTLAPNSKADLAFVLHALYVLGQEGTAAIVCF 356 (501)
T ss_pred EeecCCcccccccccccccccccchhcccCCCCCchhhHHHHHHHHHhcCCCCeEEEEec
Confidence 888765432 1 0 0 1124677888999999998665553
No 340
>COG0863 DNA modification methylase [DNA replication, recombination, and repair]
Probab=90.32 E-value=1 Score=38.35 Aligned_cols=62 Identities=23% Similarity=0.266 Sum_probs=53.7
Q ss_pred CCccHHHHHHHhcCCCCCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcC
Q 024008 92 GQPAPIIVHLHQSGALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSL 153 (274)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~ 153 (274)
..+...+.+.+.....++..|||.-+|+|..+......+..++|+|++++.++.+.++....
T Consensus 206 ~~P~~l~~r~i~~~s~~~diVlDpf~GsGtt~~aa~~~~r~~ig~e~~~~y~~~~~~r~~~~ 267 (302)
T COG0863 206 QKPLALIERLIRDYSFPGDIVLDPFAGSGTTGIAAKNLGRRFIGIEINPEYVEVALKRLQEG 267 (302)
T ss_pred CChHHHHHHHHHhcCCCCCEEeecCCCCChHHHHHHHcCCceEEEecCHHHHHHHHHHHHhh
Confidence 44566677777776777899999999999999999999999999999999999999988654
No 341
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=89.87 E-value=1.3 Score=38.10 Aligned_cols=132 Identities=10% Similarity=0.037 Sum_probs=78.3
Q ss_pred CCCCeEEEEcCCcc-hhHHHhhC-CCC-eEEEEeCChHHHHHHHHHhhcCCCCcceEEEEc-----ccCC----CCCCCC
Q 024008 107 LPKGRALVPGCGTG-YDVVAMAS-PER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKA-----DFFT----WCPTEL 174 (274)
Q Consensus 107 ~~~~~vLDiG~G~G-~~~~~l~~-~~~-~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~-----d~~~----~~~~~~ 174 (274)
..+.+||-+|+|.= ..+...++ -|+ +|+.+|+++..++.|++.- .. .+..... ++.+ ......
T Consensus 168 k~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~~G-a~----~~~~~~~~~~~~~~~~~v~~~~g~~~ 242 (354)
T KOG0024|consen 168 KKGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKKFG-AT----VTDPSSHKSSPQELAELVEKALGKKQ 242 (354)
T ss_pred ccCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHHhC-Ce----EEeeccccccHHHHHHHHHhhccccC
Confidence 45689999999974 44444455 566 9999999999999999832 11 1111111 1111 222345
Q ss_pred eeEEEecccccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCC------------CCcc--c-CHHHHHHHHhcC
Q 024008 175 FDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGG------------PPYK--V-SVSDYEEVLQPM 239 (274)
Q Consensus 175 fD~v~~~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~~~~------------~~~~--~-~~~~~~~~~~~~ 239 (274)
+|+.+...-++ ..++.....++.||.+++..++....... ..|. . ......+++++-
T Consensus 243 ~d~~~dCsG~~--------~~~~aai~a~r~gGt~vlvg~g~~~~~fpi~~v~~kE~~~~g~fry~~~~y~~ai~li~sG 314 (354)
T KOG0024|consen 243 PDVTFDCSGAE--------VTIRAAIKATRSGGTVVLVGMGAEEIQFPIIDVALKEVDLRGSFRYCNGDYPTAIELVSSG 314 (354)
T ss_pred CCeEEEccCch--------HHHHHHHHHhccCCEEEEeccCCCccccChhhhhhheeeeeeeeeeccccHHHHHHHHHcC
Confidence 88888543333 34566788899999988888765432110 1111 1 456666777764
Q ss_pred CCcEEEEeeccc
Q 024008 240 GFQAISIVDNKL 251 (274)
Q Consensus 240 Gf~~~~~~~~~~ 251 (274)
-..+........
T Consensus 315 ki~~k~lIT~r~ 326 (354)
T KOG0024|consen 315 KIDVKPLITHRY 326 (354)
T ss_pred CcCchhheeccc
Confidence 455544444333
No 342
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=89.87 E-value=0.44 Score=41.90 Aligned_cols=96 Identities=17% Similarity=0.142 Sum_probs=56.6
Q ss_pred CCCCeEEEEcCCc-chhHHHhhC-CCC-eEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC----CCCCCCeeEEE
Q 024008 107 LPKGRALVPGCGT-GYDVVAMAS-PER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT----WCPTELFDLIF 179 (274)
Q Consensus 107 ~~~~~vLDiG~G~-G~~~~~l~~-~~~-~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~----~~~~~~fD~v~ 179 (274)
.++.+||=.|||. |..+..+++ .|+ +|+++|.++...+.+++.-. ..-+.....|..+ ......+|+|+
T Consensus 175 ~~g~~VlV~G~g~vG~~a~~~ak~~G~~~Vi~~~~~~~~~~~~~~~Ga----~~~i~~~~~~~~~~i~~~~~~~g~d~vi 250 (358)
T TIGR03451 175 KRGDSVAVIGCGGVGDAAIAGAALAGASKIIAVDIDDRKLEWAREFGA----THTVNSSGTDPVEAIRALTGGFGADVVI 250 (358)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCC----ceEEcCCCcCHHHHHHHHhCCCCCCEEE
Confidence 3567888888743 344455555 677 59999999998888865321 0001111112111 12224689988
Q ss_pred ecccccccChhHHHHHHHHHHhcccCCcEEEEEEc
Q 024008 180 DYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMF 214 (274)
Q Consensus 180 ~~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~ 214 (274)
..- .. ...+....+++++||++++...
T Consensus 251 d~~--g~------~~~~~~~~~~~~~~G~iv~~G~ 277 (358)
T TIGR03451 251 DAV--GR------PETYKQAFYARDLAGTVVLVGV 277 (358)
T ss_pred ECC--CC------HHHHHHHHHHhccCCEEEEECC
Confidence 421 11 1245667789999999887654
No 343
>PF04072 LCM: Leucine carboxyl methyltransferase; InterPro: IPR007213 This entry represents a group of leucine carboxymethyltransferases which methylate the carboxyl group of leucine residues to form alpha-leucine ester residues. It includes LCTM1 which regulates the activity of serine/threonine phosphatase 2A (PP2A) through methylation of the C-terminal leucine residue of the catalytic subunit of PP2A [, , ]. This affects the heteromultimeric composition of PP2A which in turn affects protein recognition and substrate specificity. Like many other methyltransferases LCTM1 uses S-adenosylmethionine (SAM) as the methyl donor. LCTM1 contains the common SAM-dependent methyltransferase core fold, with various insertions and additions creating a specific PP2A binding site []. This entry also contains LCTM2, a homologue of LCTM1 which is not necessary for PP2A methylation and whose function is not clear.; GO: 0008168 methyltransferase activity; PDB: 2UYQ_A 2CKD_B 2UYO_A 2ZZK_B 2ZWA_B 2ZW9_B 1RJE_C 2OB2_B 1RJF_A 1RJD_A ....
Probab=89.22 E-value=3.1 Score=32.86 Aligned_cols=89 Identities=13% Similarity=0.112 Sum_probs=55.9
Q ss_pred CeEEEEcCCcchhHHHhhCC--CCeEEEEeCChHHHHHHHHHhhcCCC--CcceEEEEcccCCC----------CCCCCe
Q 024008 110 GRALVPGCGTGYDVVAMASP--ERYVVGLEISDIAIKKAEELSSSLPN--AKFVSFLKADFFTW----------CPTELF 175 (274)
Q Consensus 110 ~~vLDiG~G~G~~~~~l~~~--~~~v~~iD~s~~~~~~a~~~~~~~~~--~~~v~~~~~d~~~~----------~~~~~f 175 (274)
..|+.+|||-=.....+..+ +.+++-+|. |++++.-++.++..+. ..+.+++.+|+.+. ...+..
T Consensus 80 ~qvV~LGaGlDTr~~Rl~~~~~~~~~~evD~-p~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~~~~~~~~L~~~g~~~~~p 158 (183)
T PF04072_consen 80 RQVVNLGAGLDTRAYRLDNPAGGVRWFEVDL-PEVIALKRRLLPESGARPPANYRYVPADLRDDSWIDALPKAGFDPDRP 158 (183)
T ss_dssp SEEEEET-TT--HHHHHHHTTTTEEEEEEE--HHHHHHHHHHHHHTHHHHHEESSEEES-TTSHHHHHHHHHCTT-TTSE
T ss_pred cEEEEcCCCCCchHHHhhccccceEEEEeCC-HHHHHHHHHHHHhCcccCCcceeEEeccccchhhHHHHHHhCCCCCCC
Confidence 48999999887777777663 557777776 6666666666655421 12356899999861 123556
Q ss_pred eEEEecccccccChhHHHHHHHHH
Q 024008 176 DLIFDYTFFCAIEPEMRAAWAQKI 199 (274)
Q Consensus 176 D~v~~~~~~~~~~~~~~~~~l~~l 199 (274)
-++++-+++.|++++....+++.+
T Consensus 159 tl~i~Egvl~Yl~~~~~~~ll~~i 182 (183)
T PF04072_consen 159 TLFIAEGVLMYLSPEQVDALLRAI 182 (183)
T ss_dssp EEEEEESSGGGS-HHHHHHHHHHH
T ss_pred eEEEEcchhhcCCHHHHHHHHHHh
Confidence 678888899999887776666554
No 344
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=89.20 E-value=2.3 Score=37.25 Aligned_cols=95 Identities=17% Similarity=0.105 Sum_probs=59.2
Q ss_pred CCCCeEEEEcC--CcchhHHHhhC-CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEc-ccCC---CCCCCCeeEEE
Q 024008 107 LPKGRALVPGC--GTGYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKA-DFFT---WCPTELFDLIF 179 (274)
Q Consensus 107 ~~~~~vLDiG~--G~G~~~~~l~~-~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~-d~~~---~~~~~~fD~v~ 179 (274)
.++.+||=.|+ |.|..+..+++ .|+++++++.+++..+.+++.+... .-+..... ++.+ ....+.+|+|+
T Consensus 157 ~~g~~VlV~GaaG~vG~~aiqlAk~~G~~Vi~~~~~~~k~~~~~~~lGa~---~vi~~~~~~~~~~~i~~~~~~gvD~v~ 233 (348)
T PLN03154 157 KKGDSVFVSAASGAVGQLVGQLAKLHGCYVVGSAGSSQKVDLLKNKLGFD---EAFNYKEEPDLDAALKRYFPEGIDIYF 233 (348)
T ss_pred CCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHhcCCC---EEEECCCcccHHHHHHHHCCCCcEEEE
Confidence 45678988887 47777777777 7889999999888877776333111 11111111 2211 11124689988
Q ss_pred ecccccccChhHHHHHHHHHHhcccCCcEEEEEE
Q 024008 180 DYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLM 213 (274)
Q Consensus 180 ~~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~ 213 (274)
.. .. ...+....++|++||.++++.
T Consensus 234 d~-----vG----~~~~~~~~~~l~~~G~iv~~G 258 (348)
T PLN03154 234 DN-----VG----GDMLDAALLNMKIHGRIAVCG 258 (348)
T ss_pred EC-----CC----HHHHHHHHHHhccCCEEEEEC
Confidence 42 11 124577889999999988764
No 345
>KOG3924 consensus Putative protein methyltransferase involved in meiosis and transcriptional silencing (Dot1) [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=88.78 E-value=1.2 Score=39.21 Aligned_cols=114 Identities=18% Similarity=0.172 Sum_probs=70.5
Q ss_pred HHHHHHhcCC-CCCCeEEEEcCCcchhHHHhhC-CC-CeEEEEeCChHHHHHHHHH-------hhcCCC-CcceEEEEcc
Q 024008 97 IIVHLHQSGA-LPKGRALVPGCGTGYDVVAMAS-PE-RYVVGLEISDIAIKKAEEL-------SSSLPN-AKFVSFLKAD 165 (274)
Q Consensus 97 ~~~~~~~~~~-~~~~~vLDiG~G~G~~~~~l~~-~~-~~v~~iD~s~~~~~~a~~~-------~~~~~~-~~~v~~~~~d 165 (274)
.+..+.++.. .+++.-.|+|+|.|.....++. .+ ..-+|+++....-..+..+ ..-.|. -..++.+.++
T Consensus 180 ql~si~dEl~~g~~D~F~DLGSGVGqlv~~~aa~a~~k~svG~eim~~pS~~a~~~~~~~kk~~k~fGk~~~~~~~i~gs 259 (419)
T KOG3924|consen 180 QLRSIVDELKLGPADVFMDLGSGVGQLVCFVAAYAGCKKSVGFEIMDKPSQCAELNKEEFKKLMKHFGKKPNKIETIHGS 259 (419)
T ss_pred HHHHHHHHhccCCCCcccCCCcccchhhHHHHHhhccccccceeeecCcHHHHHHHHHHHHHHHHHhCCCcCceeecccc
Confidence 3444555543 4557889999999999887776 22 3566777654333333222 111222 2457888888
Q ss_pred cCCC----CCCCCeeEEEecccccccChhHHHHHHHHHHhcccCCcEEEEEE
Q 024008 166 FFTW----CPTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLM 213 (274)
Q Consensus 166 ~~~~----~~~~~fD~v~~~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~ 213 (274)
+... .-....++|+.+++.- +++...+ +.++..-+++|.+++...
T Consensus 260 f~~~~~v~eI~~eatvi~vNN~~F--dp~L~lr-~~eil~~ck~gtrIiS~~ 308 (419)
T KOG3924|consen 260 FLDPKRVTEIQTEATVIFVNNVAF--DPELKLR-SKEILQKCKDGTRIISSK 308 (419)
T ss_pred cCCHHHHHHHhhcceEEEEecccC--CHHHHHh-hHHHHhhCCCcceEeccc
Confidence 8762 2235678888887643 3333333 458888999999988644
No 346
>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]
Probab=88.63 E-value=2.1 Score=37.34 Aligned_cols=97 Identities=21% Similarity=0.266 Sum_probs=63.2
Q ss_pred CCCCeEEEEcC--CcchhHHHhhC-CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC----CCCCCCeeEEE
Q 024008 107 LPKGRALVPGC--GTGYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT----WCPTELFDLIF 179 (274)
Q Consensus 107 ~~~~~vLDiG~--G~G~~~~~l~~-~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~----~~~~~~fD~v~ 179 (274)
.++.+||=.|+ |.|..+.+|++ .|++++++--+++..+.+++.-.. .-+++...|+.+ ......+|+|+
T Consensus 141 ~~g~~VLV~gaaGgVG~~aiQlAk~~G~~~v~~~~s~~k~~~~~~lGAd----~vi~y~~~~~~~~v~~~t~g~gvDvv~ 216 (326)
T COG0604 141 KPGETVLVHGAAGGVGSAAIQLAKALGATVVAVVSSSEKLELLKELGAD----HVINYREEDFVEQVRELTGGKGVDVVL 216 (326)
T ss_pred CCCCEEEEecCCchHHHHHHHHHHHcCCcEEEEecCHHHHHHHHhcCCC----EEEcCCcccHHHHHHHHcCCCCceEEE
Confidence 34678988884 55677788888 676877777777766655554322 224444555443 22234699998
Q ss_pred ecccccccChhHHHHHHHHHHhcccCCcEEEEEEccC
Q 024008 180 DYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPI 216 (274)
Q Consensus 180 ~~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~~~ 216 (274)
..-- ...+.+..+.|+++|.++......
T Consensus 217 D~vG---------~~~~~~~l~~l~~~G~lv~ig~~~ 244 (326)
T COG0604 217 DTVG---------GDTFAASLAALAPGGRLVSIGALS 244 (326)
T ss_pred ECCC---------HHHHHHHHHHhccCCEEEEEecCC
Confidence 4311 234577889999999998876544
No 347
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=88.43 E-value=0.75 Score=40.66 Aligned_cols=96 Identities=17% Similarity=0.171 Sum_probs=55.8
Q ss_pred CCCCeEEEEcCCc-chhHHHhhC-CCC-eEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC---CCCCCCeeEEEe
Q 024008 107 LPKGRALVPGCGT-GYDVVAMAS-PER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT---WCPTELFDLIFD 180 (274)
Q Consensus 107 ~~~~~vLDiG~G~-G~~~~~l~~-~~~-~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~---~~~~~~fD~v~~ 180 (274)
.++.+||=.|+|. |..+..+++ .|+ +|+++|.+++..+.+++.-.. .-+.....|..+ ....+.+|+|+.
T Consensus 190 ~~g~~VlV~G~G~vG~~a~~lak~~G~~~Vi~~~~~~~r~~~a~~~Ga~----~~i~~~~~~~~~~i~~~~~~g~d~vid 265 (371)
T cd08281 190 RPGQSVAVVGLGGVGLSALLGAVAAGASQVVAVDLNEDKLALARELGAT----ATVNAGDPNAVEQVRELTGGGVDYAFE 265 (371)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHHHcCCc----eEeCCCchhHHHHHHHHhCCCCCEEEE
Confidence 3456888788642 334445555 687 699999999998888653211 001111112111 011236899984
Q ss_pred cccccccChhHHHHHHHHHHhcccCCcEEEEEEc
Q 024008 181 YTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMF 214 (274)
Q Consensus 181 ~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~ 214 (274)
.- .. ...+....++++++|.++....
T Consensus 266 ~~--G~------~~~~~~~~~~l~~~G~iv~~G~ 291 (371)
T cd08281 266 MA--GS------VPALETAYEITRRGGTTVTAGL 291 (371)
T ss_pred CC--CC------hHHHHHHHHHHhcCCEEEEEcc
Confidence 31 11 1345677888999999887653
No 348
>KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism]
Probab=88.43 E-value=7.2 Score=33.27 Aligned_cols=59 Identities=14% Similarity=0.130 Sum_probs=46.4
Q ss_pred CCCCeEEEEcCCcch---hHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC
Q 024008 107 LPKGRALVPGCGTGY---DVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT 168 (274)
Q Consensus 107 ~~~~~vLDiG~G~G~---~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~ 168 (274)
..+..||==|.|+|. .+..+++.|++++..|+++...+...+.....| ++....+|+.+
T Consensus 36 v~g~~vLITGgg~GlGr~ialefa~rg~~~vl~Din~~~~~etv~~~~~~g---~~~~y~cdis~ 97 (300)
T KOG1201|consen 36 VSGEIVLITGGGSGLGRLIALEFAKRGAKLVLWDINKQGNEETVKEIRKIG---EAKAYTCDISD 97 (300)
T ss_pred ccCCEEEEeCCCchHHHHHHHHHHHhCCeEEEEeccccchHHHHHHHHhcC---ceeEEEecCCC
Confidence 446788988988883 467778899999999999988888777776553 57788888765
No 349
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=88.36 E-value=4.9 Score=34.87 Aligned_cols=90 Identities=18% Similarity=0.097 Sum_probs=56.2
Q ss_pred CCCCeEEEEcCC-cchhHHHhhC-CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCeeEEEecccc
Q 024008 107 LPKGRALVPGCG-TGYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFF 184 (274)
Q Consensus 107 ~~~~~vLDiG~G-~G~~~~~l~~-~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~~~ 184 (274)
.++.+||=.|+| .|..+..+++ .|+++++++.+++..+.+++.-... ++ |.... ..+.+|+++.....
T Consensus 164 ~~g~~VlV~G~g~iG~~a~~~a~~~G~~vi~~~~~~~~~~~a~~~Ga~~-------vi--~~~~~-~~~~~d~~i~~~~~ 233 (329)
T TIGR02822 164 PPGGRLGLYGFGGSAHLTAQVALAQGATVHVMTRGAAARRLALALGAAS-------AG--GAYDT-PPEPLDAAILFAPA 233 (329)
T ss_pred CCCCEEEEEcCCHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHhCCce-------ec--ccccc-CcccceEEEECCCc
Confidence 456789988864 3334455555 7889999999998888887643211 11 11111 12357876532211
Q ss_pred cccChhHHHHHHHHHHhcccCCcEEEEEEc
Q 024008 185 CAIEPEMRAAWAQKIKDFLKPDGELITLMF 214 (274)
Q Consensus 185 ~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~ 214 (274)
...+....++|++||.+++...
T Consensus 234 --------~~~~~~~~~~l~~~G~~v~~G~ 255 (329)
T TIGR02822 234 --------GGLVPPALEALDRGGVLAVAGI 255 (329)
T ss_pred --------HHHHHHHHHhhCCCcEEEEEec
Confidence 1356788899999999987664
No 350
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=88.02 E-value=2.1 Score=36.95 Aligned_cols=94 Identities=16% Similarity=0.144 Sum_probs=58.2
Q ss_pred CCCCeEEEEcC--CcchhHHHhhC-CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEc-ccCC---CCCCCCeeEEE
Q 024008 107 LPKGRALVPGC--GTGYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKA-DFFT---WCPTELFDLIF 179 (274)
Q Consensus 107 ~~~~~vLDiG~--G~G~~~~~l~~-~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~-d~~~---~~~~~~fD~v~ 179 (274)
.++.+||=.|+ |.|..+..+++ .|+++++++-+++..+.+++.- ...-+..... +..+ ....+.+|+|+
T Consensus 137 ~~g~~VLI~ga~g~vG~~aiqlAk~~G~~Vi~~~~s~~~~~~~~~lG----a~~vi~~~~~~~~~~~~~~~~~~gvdvv~ 212 (325)
T TIGR02825 137 KGGETVMVNAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKVAYLKKLG----FDVAFNYKTVKSLEETLKKASPDGYDCYF 212 (325)
T ss_pred CCCCEEEEeCCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHcC----CCEEEeccccccHHHHHHHhCCCCeEEEE
Confidence 34578888874 57777777777 7889999999988888876531 1110111111 1111 11224699998
Q ss_pred ecccccccChhHHHHHHHHHHhcccCCcEEEEEE
Q 024008 180 DYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLM 213 (274)
Q Consensus 180 ~~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~ 213 (274)
.. .. ...+....++|+++|.++...
T Consensus 213 d~-----~G----~~~~~~~~~~l~~~G~iv~~G 237 (325)
T TIGR02825 213 DN-----VG----GEFSNTVIGQMKKFGRIAICG 237 (325)
T ss_pred EC-----CC----HHHHHHHHHHhCcCcEEEEec
Confidence 42 11 123477889999999998754
No 351
>PF05050 Methyltransf_21: Methyltransferase FkbM domain; InterPro: IPR007744 This entry contains proteins of unknown function.; PDB: 2PY6_A.
Probab=87.87 E-value=1.4 Score=33.60 Aligned_cols=36 Identities=19% Similarity=0.180 Sum_probs=24.1
Q ss_pred EEcCCcc--hhHHHhh----CCCCeEEEEeCChHHHHHHHHH
Q 024008 114 VPGCGTG--YDVVAMA----SPERYVVGLEISDIAIKKAEEL 149 (274)
Q Consensus 114 DiG~G~G--~~~~~l~----~~~~~v~~iD~s~~~~~~a~~~ 149 (274)
|||++.| .....+. .++.+++++|++|..++..+.+
T Consensus 1 DvGA~~G~~~~~~~~~~~~~~~~~~v~~~Ep~p~~~~~l~~~ 42 (167)
T PF05050_consen 1 DVGANIGFWSSTVYFLEKKCGPGGRVHAFEPNPSNFEKLKRN 42 (167)
T ss_dssp EES-TTS--HHHHHHHHHHTS--SEEEEE---HHHHHHHHHH
T ss_pred CcccCCChhHHHHHHHHHHcCCCCEEEEEECCHHHHHHHhHH
Confidence 8999999 5554442 2577999999999999999888
No 352
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=87.62 E-value=1.5 Score=38.12 Aligned_cols=96 Identities=18% Similarity=0.190 Sum_probs=55.1
Q ss_pred CCCCeEEEEcCCc-chhHHHhhC-CCCe-EEEEeCChHHHHHHHHHhhcCCCCcceEEEEcc---cCCCCCCCCeeEEEe
Q 024008 107 LPKGRALVPGCGT-GYDVVAMAS-PERY-VVGLEISDIAIKKAEELSSSLPNAKFVSFLKAD---FFTWCPTELFDLIFD 180 (274)
Q Consensus 107 ~~~~~vLDiG~G~-G~~~~~l~~-~~~~-v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d---~~~~~~~~~fD~v~~ 180 (274)
.++.+||=.|+|. |..+..+++ .|++ +++++.+++..+.+++.-.. .-+.....+ +.+......+|+|+.
T Consensus 162 ~~g~~vlV~G~G~vG~~~~~~ak~~G~~~vi~~~~~~~~~~~~~~~ga~----~~i~~~~~~~~~~~~~~~~~~~d~vid 237 (339)
T cd08239 162 SGRDTVLVVGAGPVGLGALMLARALGAEDVIGVDPSPERLELAKALGAD----FVINSGQDDVQEIRELTSGAGADVAIE 237 (339)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCCC----EEEcCCcchHHHHHHHhCCCCCCEEEE
Confidence 4567888887642 233344444 7777 99999999888887654211 101111111 111122346999984
Q ss_pred cccccccChhHHHHHHHHHHhcccCCcEEEEEEc
Q 024008 181 YTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMF 214 (274)
Q Consensus 181 ~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~ 214 (274)
... . ...+....+.|+++|.+++...
T Consensus 238 ~~g----~----~~~~~~~~~~l~~~G~~v~~g~ 263 (339)
T cd08239 238 CSG----N----TAARRLALEAVRPWGRLVLVGE 263 (339)
T ss_pred CCC----C----HHHHHHHHHHhhcCCEEEEEcC
Confidence 311 0 1234667788999999887654
No 353
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=87.53 E-value=11 Score=30.64 Aligned_cols=103 Identities=10% Similarity=-0.041 Sum_probs=60.3
Q ss_pred CCCeEEEEcCCcchhHH----HhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCC-----------CC
Q 024008 108 PKGRALVPGCGTGYDVV----AMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC-----------PT 172 (274)
Q Consensus 108 ~~~~vLDiG~G~G~~~~----~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-----------~~ 172 (274)
++++||-.|++.| .+. .+++.|++|++++-+++............ .++.++.+|+.+.. .-
T Consensus 4 ~~~~vlItGa~g~-iG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~---~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 79 (238)
T PRK05786 4 KGKKVAIIGVSEG-LGYAVAYFALKEGAQVCINSRNENKLKRMKKTLSKY---GNIHYVVGDVSSTESARNVIEKAAKVL 79 (238)
T ss_pred CCcEEEEECCCch-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc---CCeEEEECCCCCHHHHHHHHHHHHHHh
Confidence 4568899988643 333 33448999999999887666554443322 25788899987621 01
Q ss_pred CCeeEEEecccccccC-h---hH-----------HHHHHHHHHhcccCCcEEEEEEc
Q 024008 173 ELFDLIFDYTFFCAIE-P---EM-----------RAAWAQKIKDFLKPDGELITLMF 214 (274)
Q Consensus 173 ~~fD~v~~~~~~~~~~-~---~~-----------~~~~l~~l~~~L~~gG~l~~~~~ 214 (274)
+.+|.++.+....... . +. ...+++.+...++++|.+++...
T Consensus 80 ~~id~ii~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~iv~~ss 136 (238)
T PRK05786 80 NAIDGLVVTVGGYVEDTVEEFSGLEEMLTNHIKIPLYAVNASLRFLKEGSSIVLVSS 136 (238)
T ss_pred CCCCEEEEcCCCcCCCchHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCEEEEEec
Confidence 3468777654321110 0 00 11235566666777887766553
No 354
>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,
Probab=87.49 E-value=0.98 Score=39.15 Aligned_cols=95 Identities=21% Similarity=0.264 Sum_probs=58.2
Q ss_pred CCCCeEEEEcCCc-chhHHHhhC-CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC----CCCCCCeeEEEe
Q 024008 107 LPKGRALVPGCGT-GYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT----WCPTELFDLIFD 180 (274)
Q Consensus 107 ~~~~~vLDiG~G~-G~~~~~l~~-~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~----~~~~~~fD~v~~ 180 (274)
.++.+||-.|+|. |..+..+++ .|.+++++.-+++..+.+++.. ...-+.....++.. ..+...+|+++.
T Consensus 158 ~~g~~vLI~g~g~vG~~a~~lA~~~g~~v~~~~~s~~~~~~~~~~g----~~~v~~~~~~~~~~~l~~~~~~~~vd~vld 233 (337)
T cd08261 158 TAGDTVLVVGAGPIGLGVIQVAKARGARVIVVDIDDERLEFARELG----ADDTINVGDEDVAARLRELTDGEGADVVID 233 (337)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCeEEEECCCHHHHHHHHHhC----CCEEecCcccCHHHHHHHHhCCCCCCEEEE
Confidence 3457888888764 666667766 7889999988888887775432 11111111112111 223356899985
Q ss_pred cccccccChhHHHHHHHHHHhcccCCcEEEEEE
Q 024008 181 YTFFCAIEPEMRAAWAQKIKDFLKPDGELITLM 213 (274)
Q Consensus 181 ~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~ 213 (274)
... . ...+..+.+.|+++|.++...
T Consensus 234 ~~g----~----~~~~~~~~~~l~~~G~~i~~g 258 (337)
T cd08261 234 ATG----N----PASMEEAVELVAHGGRVVLVG 258 (337)
T ss_pred CCC----C----HHHHHHHHHHHhcCCEEEEEc
Confidence 311 1 134577888999999987654
No 355
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=87.43 E-value=3 Score=37.53 Aligned_cols=97 Identities=13% Similarity=0.058 Sum_probs=59.0
Q ss_pred HHHHHhcC--CCCCCeEEEEcCCc-chhHHHhhC-CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCC
Q 024008 98 IVHLHQSG--ALPKGRALVPGCGT-GYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTE 173 (274)
Q Consensus 98 ~~~~~~~~--~~~~~~vLDiG~G~-G~~~~~l~~-~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~ 173 (274)
+..+++.. ..++.+|+=+|+|. |......++ .|++|+++|.++.....|+.. | .... +..+.. .
T Consensus 189 ~~~i~r~t~~~l~GktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~~R~~~A~~~----G----~~~~--~~~e~v--~ 256 (413)
T cd00401 189 IDGIKRATDVMIAGKVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDPICALQAAME----G----YEVM--TMEEAV--K 256 (413)
T ss_pred HHHHHHhcCCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECChhhHHHHHhc----C----CEEc--cHHHHH--c
Confidence 34444432 35788999999996 433343444 788999999999888777653 2 1111 111111 3
Q ss_pred CeeEEEecccccccChhHHHHHHH-HHHhcccCCcEEEEEEc
Q 024008 174 LFDLIFDYTFFCAIEPEMRAAWAQ-KIKDFLKPDGELITLMF 214 (274)
Q Consensus 174 ~fD~v~~~~~~~~~~~~~~~~~l~-~l~~~L~~gG~l~~~~~ 214 (274)
.+|+|+.... . ...+. ...+.+++||+++....
T Consensus 257 ~aDVVI~atG-------~-~~~i~~~~l~~mk~GgilvnvG~ 290 (413)
T cd00401 257 EGDIFVTTTG-------N-KDIITGEHFEQMKDGAIVCNIGH 290 (413)
T ss_pred CCCEEEECCC-------C-HHHHHHHHHhcCCCCcEEEEeCC
Confidence 4799985321 1 12344 45889999999876653
No 356
>cd08232 idonate-5-DH L-idonate 5-dehydrogenase. L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai
Probab=87.08 E-value=4.3 Score=35.11 Aligned_cols=95 Identities=22% Similarity=0.346 Sum_probs=57.0
Q ss_pred CCCCeEEEEcCCc-chhHHHhhC-CCC-eEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCC-CCCCeeEEEecc
Q 024008 107 LPKGRALVPGCGT-GYDVVAMAS-PER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC-PTELFDLIFDYT 182 (274)
Q Consensus 107 ~~~~~vLDiG~G~-G~~~~~l~~-~~~-~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-~~~~fD~v~~~~ 182 (274)
.++.+||-.|||. |..+..+++ .|. ++++++.++...+.+++.- ...-+.....++.... ..+.+|+++...
T Consensus 164 ~~~~~VLI~g~g~vG~~~~~lak~~G~~~v~~~~~s~~~~~~~~~~g----~~~vi~~~~~~~~~~~~~~~~vd~vld~~ 239 (339)
T cd08232 164 LAGKRVLVTGAGPIGALVVAAARRAGAAEIVATDLADAPLAVARAMG----ADETVNLARDPLAAYAADKGDFDVVFEAS 239 (339)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHcC----CCEEEcCCchhhhhhhccCCCccEEEECC
Confidence 3667888888765 556666666 687 7999999888777665432 1010111111111111 124589998532
Q ss_pred cccccChhHHHHHHHHHHhcccCCcEEEEEE
Q 024008 183 FFCAIEPEMRAAWAQKIKDFLKPDGELITLM 213 (274)
Q Consensus 183 ~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~ 213 (274)
.. ...+..+.+.|+++|.++...
T Consensus 240 g~--------~~~~~~~~~~L~~~G~~v~~g 262 (339)
T cd08232 240 GA--------PAALASALRVVRPGGTVVQVG 262 (339)
T ss_pred CC--------HHHHHHHHHHHhcCCEEEEEe
Confidence 21 124577889999999988764
No 357
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=86.91 E-value=1.7 Score=39.37 Aligned_cols=106 Identities=19% Similarity=0.151 Sum_probs=70.6
Q ss_pred CCeEEEEcCCcchhHHHhhC--CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC--------CCCCCCeeEE
Q 024008 109 KGRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT--------WCPTELFDLI 178 (274)
Q Consensus 109 ~~~vLDiG~G~G~~~~~l~~--~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~--------~~~~~~fD~v 178 (274)
+..+|-+|-|.|.+...+.. +..++++++++|.+++.|+........ .+......|... ...+..||++
T Consensus 296 ~~~~lvvg~ggG~l~sfl~~~~p~~~i~~ve~dP~~l~va~q~f~f~q~-~r~~V~i~dGl~~~~~~~k~~~~~~~~dvl 374 (482)
T KOG2352|consen 296 GGKQLVVGLGGGGLPSFLHMSLPKFQITAVEIDPEMLEVATQYFGFMQS-DRNKVHIADGLDFLQRTAKSQQEDICPDVL 374 (482)
T ss_pred cCcEEEEecCCCccccceeeecCccceeEEEEChhHhhccHhhhchhhh-hhhhhhHhhchHHHHHHhhccccccCCcEE
Confidence 46889999999999887765 557999999999999999988754321 122333333322 1234578988
Q ss_pred Eec---cccccc--Chh--HHHHHHHHHHhcccCCcEEEEEEcc
Q 024008 179 FDY---TFFCAI--EPE--MRAAWAQKIKDFLKPDGELITLMFP 215 (274)
Q Consensus 179 ~~~---~~~~~~--~~~--~~~~~l~~l~~~L~~gG~l~~~~~~ 215 (274)
+.- .-.+.+ ++. ....++..+...|.|.|.+++..-.
T Consensus 375 ~~dvds~d~~g~~~pp~~fva~~~l~~~k~~l~p~g~f~inlv~ 418 (482)
T KOG2352|consen 375 MVDVDSKDSHGMQCPPPAFVAQVALQPVKMILPPRGMFIINLVT 418 (482)
T ss_pred EEECCCCCcccCcCCchHHHHHHHHHHHhhccCccceEEEEEec
Confidence 752 012222 222 2367889999999999998775533
No 358
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=86.80 E-value=1.9 Score=37.00 Aligned_cols=86 Identities=16% Similarity=0.118 Sum_probs=52.8
Q ss_pred CCCeEEEEcCC-cchhHHHhhC-CCCe-EEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCeeEEEecccc
Q 024008 108 PKGRALVPGCG-TGYDVVAMAS-PERY-VVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFF 184 (274)
Q Consensus 108 ~~~~vLDiG~G-~G~~~~~l~~-~~~~-v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~~~ 184 (274)
++.+||=+||| .|..+..+++ .|++ ++++|.+++.++.+..... + |..+. ....+|+|+..--
T Consensus 144 ~~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~~~rl~~a~~~~~-------i-----~~~~~-~~~g~Dvvid~~G- 209 (308)
T TIGR01202 144 KVLPDLIVGHGTLGRLLARLTKAAGGSPPAVWETNPRRRDGATGYEV-------L-----DPEKD-PRRDYRAIYDASG- 209 (308)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHhhhhccc-------c-----Chhhc-cCCCCCEEEECCC-
Confidence 45678888865 3445566665 6775 7778988877766653210 1 11100 1246899884311
Q ss_pred cccChhHHHHHHHHHHhcccCCcEEEEEEc
Q 024008 185 CAIEPEMRAAWAQKIKDFLKPDGELITLMF 214 (274)
Q Consensus 185 ~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~ 214 (274)
. ...++...++++++|++++...
T Consensus 210 -~------~~~~~~~~~~l~~~G~iv~~G~ 232 (308)
T TIGR01202 210 -D------PSLIDTLVRRLAKGGEIVLAGF 232 (308)
T ss_pred -C------HHHHHHHHHhhhcCcEEEEEee
Confidence 1 2345778889999999987654
No 359
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=86.75 E-value=1.2 Score=37.59 Aligned_cols=96 Identities=19% Similarity=0.106 Sum_probs=55.7
Q ss_pred CCCCeEEEEcCCc-chhHHHhhC-CCCe-EEEEeCChHHHHHHHHHhhcCCCCcceEEEE-cc-cCCCCCCCCeeEEEec
Q 024008 107 LPKGRALVPGCGT-GYDVVAMAS-PERY-VVGLEISDIAIKKAEELSSSLPNAKFVSFLK-AD-FFTWCPTELFDLIFDY 181 (274)
Q Consensus 107 ~~~~~vLDiG~G~-G~~~~~l~~-~~~~-v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~-~d-~~~~~~~~~fD~v~~~ 181 (274)
.++.+||=+|+|. |..+..+++ .|++ |+++|.+++..+.+++.-... -+.... .+ +........+|+|+..
T Consensus 119 ~~g~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~~~~~~r~~~a~~~Ga~~----~i~~~~~~~~~~~~~~~~g~d~vid~ 194 (280)
T TIGR03366 119 LKGRRVLVVGAGMLGLTAAAAAAAAGAARVVAADPSPDRRELALSFGATA----LAEPEVLAERQGGLQNGRGVDVALEF 194 (280)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCCcE----ecCchhhHHHHHHHhCCCCCCEEEEC
Confidence 3567888887742 333344554 6775 999999998888887642111 011000 00 0111123468998842
Q ss_pred ccccccChhHHHHHHHHHHhcccCCcEEEEEEc
Q 024008 182 TFFCAIEPEMRAAWAQKIKDFLKPDGELITLMF 214 (274)
Q Consensus 182 ~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~ 214 (274)
-. . ...+....++++++|.++....
T Consensus 195 ~G----~----~~~~~~~~~~l~~~G~iv~~G~ 219 (280)
T TIGR03366 195 SG----A----TAAVRACLESLDVGGTAVLAGS 219 (280)
T ss_pred CC----C----hHHHHHHHHHhcCCCEEEEecc
Confidence 11 0 2346778899999999987653
No 360
>PRK05867 short chain dehydrogenase; Provisional
Probab=86.58 E-value=16 Score=30.06 Aligned_cols=75 Identities=19% Similarity=0.043 Sum_probs=49.3
Q ss_pred CCCCeEEEEcCCcchh---HHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCC-----------C
Q 024008 107 LPKGRALVPGCGTGYD---VVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP-----------T 172 (274)
Q Consensus 107 ~~~~~vLDiG~G~G~~---~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~-----------~ 172 (274)
..++++|-.|++.|.- +..|++.|++|+.++.+++.++...+.+...+ .++.++.+|+.+... .
T Consensus 7 ~~~k~vlVtGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~ 84 (253)
T PRK05867 7 LHGKRALITGASTGIGKRVALAYVEAGAQVAIAARHLDALEKLADEIGTSG--GKVVPVCCDVSQHQQVTSMLDQVTAEL 84 (253)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcC--CeEEEEEccCCCHHHHHHHHHHHHHHh
Confidence 3467899999866532 34555589999999998887776666554433 357778888865210 1
Q ss_pred CCeeEEEeccc
Q 024008 173 ELFDLIFDYTF 183 (274)
Q Consensus 173 ~~fD~v~~~~~ 183 (274)
++.|+++.+..
T Consensus 85 g~id~lv~~ag 95 (253)
T PRK05867 85 GGIDIAVCNAG 95 (253)
T ss_pred CCCCEEEECCC
Confidence 35677776544
No 361
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=86.20 E-value=18 Score=32.82 Aligned_cols=89 Identities=15% Similarity=0.105 Sum_probs=55.6
Q ss_pred eEEEEcCCcchhHHHhhC----CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCC-----CCCCCeeEEEec
Q 024008 111 RALVPGCGTGYDVVAMAS----PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW-----CPTELFDLIFDY 181 (274)
Q Consensus 111 ~vLDiG~G~G~~~~~l~~----~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-----~~~~~fD~v~~~ 181 (274)
+|+=+|+ |..+..+++ .|..++++|.+++.++.+++.. .+.++.+|..+. ..-..+|.|++.
T Consensus 2 ~viIiG~--G~ig~~~a~~L~~~g~~v~vid~~~~~~~~~~~~~-------~~~~~~gd~~~~~~l~~~~~~~a~~vi~~ 72 (453)
T PRK09496 2 KIIIVGA--GQVGYTLAENLSGENNDVTVIDTDEERLRRLQDRL-------DVRTVVGNGSSPDVLREAGAEDADLLIAV 72 (453)
T ss_pred EEEEECC--CHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhhc-------CEEEEEeCCCCHHHHHHcCCCcCCEEEEe
Confidence 4666766 667665555 6889999999999887776532 367888888751 123568888753
Q ss_pred ccccccChhHHHHHHHHHHhcccCCcEEEEEE
Q 024008 182 TFFCAIEPEMRAAWAQKIKDFLKPDGELITLM 213 (274)
Q Consensus 182 ~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~ 213 (274)
. +.+.....+....+.+.|.-.+++..
T Consensus 73 ~-----~~~~~n~~~~~~~r~~~~~~~ii~~~ 99 (453)
T PRK09496 73 T-----DSDETNMVACQIAKSLFGAPTTIARV 99 (453)
T ss_pred c-----CChHHHHHHHHHHHHhcCCCeEEEEE
Confidence 2 22233444455556665555555543
No 362
>cd05278 FDH_like Formaldehyde dehydrogenases. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall
Probab=86.14 E-value=2.1 Score=37.07 Aligned_cols=94 Identities=16% Similarity=0.215 Sum_probs=55.1
Q ss_pred CCCeEEEEcCC-cchhHHHhhC-CCC-eEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC----CCCCCCeeEEEe
Q 024008 108 PKGRALVPGCG-TGYDVVAMAS-PER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT----WCPTELFDLIFD 180 (274)
Q Consensus 108 ~~~~vLDiG~G-~G~~~~~l~~-~~~-~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~----~~~~~~fD~v~~ 180 (274)
++.+||-.|+| .|..+..+++ .|. .+++++.++...+.+++.- ...-+.....++.. ....+.+|+++.
T Consensus 167 ~~~~VlI~g~g~vg~~~iqlak~~g~~~v~~~~~~~~~~~~~~~~g----~~~vi~~~~~~~~~~i~~~~~~~~~d~vld 242 (347)
T cd05278 167 PGSTVAVIGAGPVGLCAVAGARLLGAARIIAVDSNPERLDLAKEAG----ATDIINPKNGDIVEQILELTGGRGVDCVIE 242 (347)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHhC----CcEEEcCCcchHHHHHHHHcCCCCCcEEEE
Confidence 45688877765 3566666666 675 7889988887777666432 10101111111111 223356999884
Q ss_pred cccccccChhHHHHHHHHHHhcccCCcEEEEEE
Q 024008 181 YTFFCAIEPEMRAAWAQKIKDFLKPDGELITLM 213 (274)
Q Consensus 181 ~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~ 213 (274)
...- ...+....+.|+++|.++...
T Consensus 243 ~~g~--------~~~~~~~~~~l~~~G~~v~~g 267 (347)
T cd05278 243 AVGF--------EETFEQAVKVVRPGGTIANVG 267 (347)
T ss_pred ccCC--------HHHHHHHHHHhhcCCEEEEEc
Confidence 3111 135677888999999988653
No 363
>PF07109 Mg-por_mtran_C: Magnesium-protoporphyrin IX methyltransferase C-terminus; InterPro: IPR010940 This entry represents the C terminus (approximately 100 residues) of bacterial and eukaryotic Magnesium-protoporphyrin IX methyltransferase (2.1.1.11 from EC). This converts magnesium-protoporphyrin IX to magnesium-protoporphyrin IX metylester using S-adenosyl-L-methionine as a cofactor [].; GO: 0046406 magnesium protoporphyrin IX methyltransferase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process
Probab=85.78 E-value=5.9 Score=27.76 Aligned_cols=70 Identities=14% Similarity=0.114 Sum_probs=45.6
Q ss_pred ccccccChhHHHHHHHHHHhcccCCcEEEEEEccCC---------------CCCCCCCcccCHHHHHHHHhcCCCcEEEE
Q 024008 182 TFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPIS---------------DHVGGPPYKVSVSDYEEVLQPMGFQAISI 246 (274)
Q Consensus 182 ~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~Gf~~~~~ 246 (274)
.++.|-+.++..+++.++....+ |.+++..-+.+ .......+....+++.+.+.++||++...
T Consensus 3 DvLIHYp~~d~~~~l~~La~~t~--~~~ifTfAP~T~~L~~m~~iG~lFP~~dRsp~i~~~~e~~l~~~l~~~g~~~~r~ 80 (97)
T PF07109_consen 3 DVLIHYPAEDAAQMLAHLASRTR--GSLIFTFAPRTPLLALMHAIGKLFPRPDRSPRIYPHREEDLRRALAAAGWRIGRT 80 (97)
T ss_pred ceEeccCHHHHHHHHHHHHHhcc--CcEEEEECCCCHHHHHHHHHhccCCCCCCCCcEEEeCHHHHHHHHHhCCCeeeec
Confidence 44556677777888888887655 45554432211 11112234568999999999999999888
Q ss_pred eeccccc
Q 024008 247 VDNKLAI 253 (274)
Q Consensus 247 ~~~~~~~ 253 (274)
+....++
T Consensus 81 ~ris~gF 87 (97)
T PF07109_consen 81 ERISSGF 87 (97)
T ss_pred ccccCcC
Confidence 7765544
No 364
>cd08293 PTGR2 Prostaglandin reductase. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid
Probab=85.73 E-value=2.8 Score=36.38 Aligned_cols=91 Identities=16% Similarity=0.161 Sum_probs=56.6
Q ss_pred CeEEEEcC--CcchhHHHhhC-CCC-eEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC----CCCCCCeeEEEec
Q 024008 110 GRALVPGC--GTGYDVVAMAS-PER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT----WCPTELFDLIFDY 181 (274)
Q Consensus 110 ~~vLDiG~--G~G~~~~~l~~-~~~-~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~----~~~~~~fD~v~~~ 181 (274)
.+||=.|+ |.|..+..+++ .|+ +|++++-+++..+.+++.+.. ..-+.....++.+ .. .+.+|+|+..
T Consensus 156 ~~VlI~ga~g~vG~~aiqlAk~~G~~~Vi~~~~s~~~~~~~~~~lGa---~~vi~~~~~~~~~~i~~~~-~~gvd~vid~ 231 (345)
T cd08293 156 QTMVVSGAAGACGSLAGQIGRLLGCSRVVGICGSDEKCQLLKSELGF---DAAINYKTDNVAERLRELC-PEGVDVYFDN 231 (345)
T ss_pred CEEEEECCCcHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHhcCC---cEEEECCCCCHHHHHHHHC-CCCceEEEEC
Confidence 68888875 57777777777 788 799999998888777664321 1111111112211 12 2569999842
Q ss_pred ccccccChhHHHHHHHHHHhcccCCcEEEEEE
Q 024008 182 TFFCAIEPEMRAAWAQKIKDFLKPDGELITLM 213 (274)
Q Consensus 182 ~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~ 213 (274)
- . .. .+....++|+++|.++...
T Consensus 232 ~--g---~~----~~~~~~~~l~~~G~iv~~G 254 (345)
T cd08293 232 V--G---GE----ISDTVISQMNENSHIILCG 254 (345)
T ss_pred C--C---cH----HHHHHHHHhccCCEEEEEe
Confidence 1 1 11 2467888999999988654
No 365
>cd08236 sugar_DH NAD(P)-dependent sugar dehydrogenases. This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast
Probab=85.43 E-value=1.7 Score=37.73 Aligned_cols=95 Identities=17% Similarity=0.202 Sum_probs=55.7
Q ss_pred CCCCeEEEEcCCc-chhHHHhhC-CCCe-EEEEeCChHHHHHHHHHhhcCCCCcceEEEE---cccCCCCCCCCeeEEEe
Q 024008 107 LPKGRALVPGCGT-GYDVVAMAS-PERY-VVGLEISDIAIKKAEELSSSLPNAKFVSFLK---ADFFTWCPTELFDLIFD 180 (274)
Q Consensus 107 ~~~~~vLDiG~G~-G~~~~~l~~-~~~~-v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~---~d~~~~~~~~~fD~v~~ 180 (274)
.++.+||-.|+|. |..+..+++ .|.+ +++++-++...+.+++. +...-+.... ..+........+|+++.
T Consensus 158 ~~~~~vlI~g~g~~g~~~~~lA~~~G~~~v~~~~~~~~~~~~l~~~----g~~~~~~~~~~~~~~~~~~~~~~~~d~vld 233 (343)
T cd08236 158 TLGDTVVVIGAGTIGLLAIQWLKILGAKRVIAVDIDDEKLAVAREL----GADDTINPKEEDVEKVRELTEGRGADLVIE 233 (343)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHc----CCCEEecCccccHHHHHHHhCCCCCCEEEE
Confidence 3456888888655 555666666 6776 99999888777766432 1101011111 11111223345999985
Q ss_pred cccccccChhHHHHHHHHHHhcccCCcEEEEEE
Q 024008 181 YTFFCAIEPEMRAAWAQKIKDFLKPDGELITLM 213 (274)
Q Consensus 181 ~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~ 213 (274)
.. .. ...+..+.++|+++|.++...
T Consensus 234 ~~-----g~---~~~~~~~~~~l~~~G~~v~~g 258 (343)
T cd08236 234 AA-----GS---PATIEQALALARPGGKVVLVG 258 (343)
T ss_pred CC-----CC---HHHHHHHHHHhhcCCEEEEEc
Confidence 31 11 134577889999999987664
No 366
>PRK05872 short chain dehydrogenase; Provisional
Probab=85.19 E-value=16 Score=31.01 Aligned_cols=75 Identities=11% Similarity=0.077 Sum_probs=48.4
Q ss_pred CCCCeEEEEcCCcchh---HHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCC-----------CC
Q 024008 107 LPKGRALVPGCGTGYD---VVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC-----------PT 172 (274)
Q Consensus 107 ~~~~~vLDiG~G~G~~---~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-----------~~ 172 (274)
..++++|-.|++.|.- +..+++.|++|+.++.+++.++...+.... ..++..+.+|+.+.. ..
T Consensus 7 l~gk~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~l~~~~~~l~~---~~~~~~~~~Dv~d~~~v~~~~~~~~~~~ 83 (296)
T PRK05872 7 LAGKVVVVTGAARGIGAELARRLHARGAKLALVDLEEAELAALAAELGG---DDRVLTVVADVTDLAAMQAAAEEAVERF 83 (296)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhcC---CCcEEEEEecCCCHHHHHHHHHHHHHHc
Confidence 3467888888665422 344555899999999988877665554432 134556668887621 11
Q ss_pred CCeeEEEecccc
Q 024008 173 ELFDLIFDYTFF 184 (274)
Q Consensus 173 ~~fD~v~~~~~~ 184 (274)
++.|+++.+...
T Consensus 84 g~id~vI~nAG~ 95 (296)
T PRK05872 84 GGIDVVVANAGI 95 (296)
T ss_pred CCCCEEEECCCc
Confidence 568999987654
No 367
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=85.16 E-value=4.4 Score=35.41 Aligned_cols=97 Identities=14% Similarity=0.161 Sum_probs=55.9
Q ss_pred CCCCeEEEEcCCc-chhHHHhhC-CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEc---ccCC----CCCCCCee-
Q 024008 107 LPKGRALVPGCGT-GYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKA---DFFT----WCPTELFD- 176 (274)
Q Consensus 107 ~~~~~vLDiG~G~-G~~~~~l~~-~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~---d~~~----~~~~~~fD- 176 (274)
.++.+||-.|+|. |..+..+++ .|.+++++|.+++.++.+++.-. . .-+..... |+.+ ......+|
T Consensus 165 ~~g~~VlV~G~G~vG~~a~~~a~~~G~~vi~~~~~~~~~~~~~~~Ga-~---~~i~~~~~~~~~~~~~~~~~t~~~g~d~ 240 (349)
T TIGR03201 165 KKGDLVIVIGAGGVGGYMVQTAKAMGAAVVAIDIDPEKLEMMKGFGA-D---LTLNPKDKSAREVKKLIKAFAKARGLRS 240 (349)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHhCC-c---eEecCccccHHHHHHHHHhhcccCCCCC
Confidence 4567999999854 555556665 67899999999998888865321 0 11111111 1111 11112354
Q ss_pred ---EEEecccccccChhHHHHHHHHHHhcccCCcEEEEEEcc
Q 024008 177 ---LIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFP 215 (274)
Q Consensus 177 ---~v~~~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~~ 215 (274)
.|+.. ... ...+....++|++||++++....
T Consensus 241 ~~d~v~d~-----~g~---~~~~~~~~~~l~~~G~iv~~G~~ 274 (349)
T TIGR03201 241 TGWKIFEC-----SGS---KPGQESALSLLSHGGTLVVVGYT 274 (349)
T ss_pred CcCEEEEC-----CCC---hHHHHHHHHHHhcCCeEEEECcC
Confidence 45421 111 13456678889999999876543
No 368
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=85.01 E-value=19 Score=29.28 Aligned_cols=73 Identities=10% Similarity=-0.009 Sum_probs=47.1
Q ss_pred CCCeEEEEcCCcchhHH----HhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCC-----------C
Q 024008 108 PKGRALVPGCGTGYDVV----AMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP-----------T 172 (274)
Q Consensus 108 ~~~~vLDiG~G~G~~~~----~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~-----------~ 172 (274)
++.++|-.|++.| .+. .+++.|.+++.++.++..+..+.+.....+ .++.++..|+.+... .
T Consensus 4 ~~~~~lItG~~g~-iG~~~a~~l~~~G~~vi~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~ 80 (253)
T PRK08217 4 KDKVIVITGGAQG-LGRAMAEYLAQKGAKLALIDLNQEKLEEAVAECGALG--TEVRGYAANVTDEEDVEATFAQIAEDF 80 (253)
T ss_pred CCCEEEEECCCch-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CceEEEEcCCCCHHHHHHHHHHHHHHc
Confidence 4568888886443 333 344478899999998876666555544332 457888889865210 1
Q ss_pred CCeeEEEeccc
Q 024008 173 ELFDLIFDYTF 183 (274)
Q Consensus 173 ~~fD~v~~~~~ 183 (274)
++.|.|+.+..
T Consensus 81 ~~id~vi~~ag 91 (253)
T PRK08217 81 GQLNGLINNAG 91 (253)
T ss_pred CCCCEEEECCC
Confidence 46899987643
No 369
>PRK07533 enoyl-(acyl carrier protein) reductase; Provisional
Probab=84.98 E-value=18 Score=29.96 Aligned_cols=75 Identities=21% Similarity=0.124 Sum_probs=45.0
Q ss_pred CCCCeEEEEcCCcc-hhH----HHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCC-----------
Q 024008 107 LPKGRALVPGCGTG-YDV----VAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC----------- 170 (274)
Q Consensus 107 ~~~~~vLDiG~G~G-~~~----~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~----------- 170 (274)
..++.+|-.|+++| ..+ ..+++.|++|+.++.+....+...+..... ..+.++.+|+.+..
T Consensus 8 ~~~k~~lItGas~g~GIG~a~a~~la~~G~~v~l~~r~~~~~~~~~~~~~~~---~~~~~~~~D~~~~~~v~~~~~~~~~ 84 (258)
T PRK07533 8 LAGKRGLVVGIANEQSIAWGCARAFRALGAELAVTYLNDKARPYVEPLAEEL---DAPIFLPLDVREPGQLEAVFARIAE 84 (258)
T ss_pred cCCCEEEEECCCCCCcHHHHHHHHHHHcCCEEEEEeCChhhHHHHHHHHHhh---ccceEEecCcCCHHHHHHHHHHHHH
Confidence 34578899997652 333 445558999999888765433333332221 12456778887621
Q ss_pred CCCCeeEEEecccc
Q 024008 171 PTELFDLIFDYTFF 184 (274)
Q Consensus 171 ~~~~fD~v~~~~~~ 184 (274)
..++.|+++.+..+
T Consensus 85 ~~g~ld~lv~nAg~ 98 (258)
T PRK07533 85 EWGRLDFLLHSIAF 98 (258)
T ss_pred HcCCCCEEEEcCcc
Confidence 12578999987543
No 370
>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac
Probab=84.55 E-value=2.6 Score=36.18 Aligned_cols=94 Identities=16% Similarity=0.132 Sum_probs=58.2
Q ss_pred CCCCeEEEEc--CCcchhHHHhhC-CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC---CCCCCCeeEEEe
Q 024008 107 LPKGRALVPG--CGTGYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT---WCPTELFDLIFD 180 (274)
Q Consensus 107 ~~~~~vLDiG--~G~G~~~~~l~~-~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~---~~~~~~fD~v~~ 180 (274)
.++.+||=.| .|.|..+..+++ .|.++++++-+++..+.+++.- ...-+.....|+.. ....+.+|+|+.
T Consensus 142 ~~g~~vlI~ga~g~vG~~aiqlA~~~G~~vi~~~~s~~~~~~l~~~G----a~~vi~~~~~~~~~~v~~~~~~gvd~vld 217 (329)
T cd08294 142 KAGETVVVNGAAGAVGSLVGQIAKIKGCKVIGCAGSDDKVAWLKELG----FDAVFNYKTVSLEEALKEAAPDGIDCYFD 217 (329)
T ss_pred CCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHcC----CCEEEeCCCccHHHHHHHHCCCCcEEEEE
Confidence 3457888777 466677777777 7889999999888888886631 11111111112211 111256898884
Q ss_pred cccccccChhHHHHHHHHHHhcccCCcEEEEEE
Q 024008 181 YTFFCAIEPEMRAAWAQKIKDFLKPDGELITLM 213 (274)
Q Consensus 181 ~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~ 213 (274)
. .. ...+....++|+++|.++...
T Consensus 218 ~--~g-------~~~~~~~~~~l~~~G~iv~~g 241 (329)
T cd08294 218 N--VG-------GEFSSTVLSHMNDFGRVAVCG 241 (329)
T ss_pred C--CC-------HHHHHHHHHhhccCCEEEEEc
Confidence 2 11 134578889999999988654
No 371
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=84.50 E-value=6.6 Score=33.26 Aligned_cols=84 Identities=17% Similarity=0.142 Sum_probs=51.1
Q ss_pred eEEEEcCCc--chhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCeeEEEecccccccC
Q 024008 111 RALVPGCGT--GYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFCAIE 188 (274)
Q Consensus 111 ~vLDiG~G~--G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~~~~~~~ 188 (274)
+|.=||+|. |.++..|++.|.+|+++|.+++.++.+.+.- . +.....+. + .-...|+|+.. ++
T Consensus 2 ~I~IIG~G~mG~sla~~L~~~g~~V~~~d~~~~~~~~a~~~g----~---~~~~~~~~-~--~~~~aDlVila-----vp 66 (279)
T PRK07417 2 KIGIVGLGLIGGSLGLDLRSLGHTVYGVSRRESTCERAIERG----L---VDEASTDL-S--LLKDCDLVILA-----LP 66 (279)
T ss_pred eEEEEeecHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHCC----C---cccccCCH-h--HhcCCCEEEEc-----CC
Confidence 466677774 3455566668889999999998887775431 1 11111111 1 12456888854 33
Q ss_pred hhHHHHHHHHHHhcccCCcEE
Q 024008 189 PEMRAAWAQKIKDFLKPDGEL 209 (274)
Q Consensus 189 ~~~~~~~l~~l~~~L~~gG~l 209 (274)
+.....+++++...++++.++
T Consensus 67 ~~~~~~~~~~l~~~l~~~~ii 87 (279)
T PRK07417 67 IGLLLPPSEQLIPALPPEAIV 87 (279)
T ss_pred HHHHHHHHHHHHHhCCCCcEE
Confidence 444556778888888776544
No 372
>PRK08213 gluconate 5-dehydrogenase; Provisional
Probab=84.34 E-value=3.8 Score=33.96 Aligned_cols=74 Identities=18% Similarity=0.054 Sum_probs=49.9
Q ss_pred CCCCeEEEEcCCcchhHHHhh----CCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCC-----------
Q 024008 107 LPKGRALVPGCGTGYDVVAMA----SPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP----------- 171 (274)
Q Consensus 107 ~~~~~vLDiG~G~G~~~~~l~----~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~----------- 171 (274)
.+++++|=.|+ +|..+..++ +.|++|+.++-++..++.........+ .++.++.+|+.+...
T Consensus 10 ~~~k~ilItGa-~g~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~i~~~~--~~~~~~~~Dl~d~~~i~~~~~~~~~~ 86 (259)
T PRK08213 10 LSGKTALVTGG-SRGLGLQIAEALGEAGARVVLSARKAEELEEAAAHLEALG--IDALWIAADVADEADIERLAEETLER 86 (259)
T ss_pred cCCCEEEEECC-CchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcC--CeEEEEEccCCCHHHHHHHHHHHHHH
Confidence 45678888885 455554444 478999999998877766665544332 457889999986211
Q ss_pred CCCeeEEEeccc
Q 024008 172 TELFDLIFDYTF 183 (274)
Q Consensus 172 ~~~fD~v~~~~~ 183 (274)
.++.|.|+.+..
T Consensus 87 ~~~id~vi~~ag 98 (259)
T PRK08213 87 FGHVDILVNNAG 98 (259)
T ss_pred hCCCCEEEECCC
Confidence 146899987754
No 373
>PRK08324 short chain dehydrogenase; Validated
Probab=84.31 E-value=13 Score=35.84 Aligned_cols=73 Identities=16% Similarity=0.062 Sum_probs=48.1
Q ss_pred CCCeEEEEcCCcc--hh-HHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCC-----------CCC
Q 024008 108 PKGRALVPGCGTG--YD-VVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC-----------PTE 173 (274)
Q Consensus 108 ~~~~vLDiG~G~G--~~-~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-----------~~~ 173 (274)
++++||-.|++.| .. +..+++.|++|+++|.++...+.+...+... .++.++.+|+.+.. ..+
T Consensus 421 ~gk~vLVTGasggIG~~la~~L~~~Ga~Vvl~~r~~~~~~~~~~~l~~~---~~v~~v~~Dvtd~~~v~~~~~~~~~~~g 497 (681)
T PRK08324 421 AGKVALVTGAAGGIGKATAKRLAAEGACVVLADLDEEAAEAAAAELGGP---DRALGVACDVTDEAAVQAAFEEAALAFG 497 (681)
T ss_pred CCCEEEEecCCCHHHHHHHHHHHHCcCEEEEEeCCHHHHHHHHHHHhcc---CcEEEEEecCCCHHHHHHHHHHHHHHcC
Confidence 3467888886433 22 2344458899999999988776665554332 35888899987621 124
Q ss_pred CeeEEEeccc
Q 024008 174 LFDLIFDYTF 183 (274)
Q Consensus 174 ~fD~v~~~~~ 183 (274)
++|+|+.+..
T Consensus 498 ~iDvvI~~AG 507 (681)
T PRK08324 498 GVDIVVSNAG 507 (681)
T ss_pred CCCEEEECCC
Confidence 6899987754
No 374
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=84.29 E-value=3.8 Score=35.25 Aligned_cols=96 Identities=15% Similarity=0.153 Sum_probs=64.2
Q ss_pred CCCeEEEEcCCc-chhHHHhhC-CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCC-CCCCCeeEEEecccc
Q 024008 108 PKGRALVPGCGT-GYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW-CPTELFDLIFDYTFF 184 (274)
Q Consensus 108 ~~~~vLDiG~G~-G~~~~~l~~-~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~~~~~fD~v~~~~~~ 184 (274)
++.+|.-+|.|. |..+..++- .|+.|+-+|+|.+.+......+. .++...-.+..+. ..-.+.|+++..-.+
T Consensus 167 ~~~kv~iiGGGvvgtnaAkiA~glgA~Vtild~n~~rl~~ldd~f~-----~rv~~~~st~~~iee~v~~aDlvIgaVLI 241 (371)
T COG0686 167 LPAKVVVLGGGVVGTNAAKIAIGLGADVTILDLNIDRLRQLDDLFG-----GRVHTLYSTPSNIEEAVKKADLVIGAVLI 241 (371)
T ss_pred CCccEEEECCccccchHHHHHhccCCeeEEEecCHHHHhhhhHhhC-----ceeEEEEcCHHHHHHHhhhccEEEEEEEe
Confidence 346788888875 555555554 78999999999988777766552 3466655555442 223578999864333
Q ss_pred cccChhHHHHHHHHHHhcccCCcEEE
Q 024008 185 CAIEPEMRAAWAQKIKDFLKPDGELI 210 (274)
Q Consensus 185 ~~~~~~~~~~~l~~l~~~L~~gG~l~ 210 (274)
..- ....-+.+++.+.++||+.++
T Consensus 242 pga--kaPkLvt~e~vk~MkpGsViv 265 (371)
T COG0686 242 PGA--KAPKLVTREMVKQMKPGSVIV 265 (371)
T ss_pred cCC--CCceehhHHHHHhcCCCcEEE
Confidence 322 223456788999999999887
No 375
>cd08234 threonine_DH_like L-threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=84.02 E-value=6.5 Score=33.82 Aligned_cols=93 Identities=15% Similarity=0.147 Sum_probs=56.8
Q ss_pred CCCCeEEEEcCC-cchhHHHhhC-CCCe-EEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC-----CCCCCCeeEE
Q 024008 107 LPKGRALVPGCG-TGYDVVAMAS-PERY-VVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT-----WCPTELFDLI 178 (274)
Q Consensus 107 ~~~~~vLDiG~G-~G~~~~~l~~-~~~~-v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-----~~~~~~fD~v 178 (274)
.++.+||-.|+| .|..+..+++ .|.+ +++++.+++..+.+++.. .. .++..+-.. ......+|++
T Consensus 158 ~~g~~vlI~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~~g----~~---~~~~~~~~~~~~~~~~~~~~vd~v 230 (334)
T cd08234 158 KPGDSVLVFGAGPIGLLLAQLLKLNGASRVTVAEPNEEKLELAKKLG----AT---ETVDPSREDPEAQKEDNPYGFDVV 230 (334)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhC----Ce---EEecCCCCCHHHHHHhcCCCCcEE
Confidence 355788888865 2555555665 6776 899999988887775432 11 122211111 1133568999
Q ss_pred EecccccccChhHHHHHHHHHHhcccCCcEEEEEEc
Q 024008 179 FDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMF 214 (274)
Q Consensus 179 ~~~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~ 214 (274)
+.... . ...+..+.++|+++|.++....
T Consensus 231 ~~~~~----~----~~~~~~~~~~l~~~G~~v~~g~ 258 (334)
T cd08234 231 IEATG----V----PKTLEQAIEYARRGGTVLVFGV 258 (334)
T ss_pred EECCC----C----hHHHHHHHHHHhcCCEEEEEec
Confidence 85311 0 2356777888999999887653
No 376
>COG5379 BtaA S-adenosylmethionine:diacylglycerol 3-amino-3-carboxypropyl transferase [Lipid metabolism]
Probab=84.01 E-value=2.5 Score=35.93 Aligned_cols=75 Identities=9% Similarity=-0.031 Sum_probs=62.6
Q ss_pred EEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCC---CCCCCeeEEEecccccccChhHHHHHHHHHHhcccCCcEEE
Q 024008 134 VGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW---CPTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELI 210 (274)
Q Consensus 134 ~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~---~~~~~fD~v~~~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~ 210 (274)
.-+...+...+.+++++ .+|.+..+|+.+. -+.+.+|.++...+-.++++.....+..++.+-+.+|..++
T Consensus 290 lP~yl~~~~YEsir~n~------~RV~ihha~~iE~l~~k~ag~Vdr~iLlDaqdwmtd~qln~lws~isrta~~gA~Vi 363 (414)
T COG5379 290 LPAYLDEGVYESIRQNL------RRVAIHHADIIELLAGKPAGNVDRYILLDAQDWMTDGQLNSLWSEISRTAEAGARVI 363 (414)
T ss_pred CChhhchhhHHHHHhhh------hheeeecccHHHHhccCCCCCcceEEEecchhhcccchHHHHHHHHhhccCCCcEEE
Confidence 33556788888888887 5799999999883 25678999999999888988899999999999999999988
Q ss_pred EEEc
Q 024008 211 TLMF 214 (274)
Q Consensus 211 ~~~~ 214 (274)
.-..
T Consensus 364 fRta 367 (414)
T COG5379 364 FRTA 367 (414)
T ss_pred Eecc
Confidence 7554
No 377
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=83.94 E-value=5.6 Score=36.86 Aligned_cols=95 Identities=16% Similarity=0.285 Sum_probs=59.8
Q ss_pred CCCCeEEEEcCCcc-hhHHHhhC-CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC----------------
Q 024008 107 LPKGRALVPGCGTG-YDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT---------------- 168 (274)
Q Consensus 107 ~~~~~vLDiG~G~G-~~~~~l~~-~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~---------------- 168 (274)
.++.+|+=+|+|.= ..+..+++ .|+.|+++|.+++.++.++..- .+++..|..+
T Consensus 162 vp~akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~~~rle~a~~lG--------a~~v~v~~~e~g~~~~gYa~~~s~~~ 233 (511)
T TIGR00561 162 VPPAKVLVIGAGVAGLAAIGAANSLGAIVRAFDTRPEVKEQVQSMG--------AEFLELDFKEEGGSGDGYAKVMSEEF 233 (511)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcC--------CeEEeccccccccccccceeecCHHH
Confidence 35689999999864 33444444 7889999999999888877631 2222222110
Q ss_pred ------CCC--CCCeeEEEecccccccChhHHHHHHHHHHhcccCCcEEEE
Q 024008 169 ------WCP--TELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELIT 211 (274)
Q Consensus 169 ------~~~--~~~fD~v~~~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~ 211 (274)
..+ -..+|+|+....+..-+.+ .-+.+++.+.+|||+.++=
T Consensus 234 ~~~~~~~~~e~~~~~DIVI~TalipG~~aP--~Lit~emv~~MKpGsvIVD 282 (511)
T TIGR00561 234 IAAEMELFAAQAKEVDIIITTALIPGKPAP--KLITEEMVDSMKAGSVIVD 282 (511)
T ss_pred HHHHHHHHHHHhCCCCEEEECcccCCCCCC--eeehHHHHhhCCCCCEEEE
Confidence 011 2469999876544332211 2355778999999998773
No 378
>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in
Probab=83.53 E-value=7.4 Score=33.71 Aligned_cols=94 Identities=16% Similarity=0.145 Sum_probs=59.4
Q ss_pred CCCCeEEEEcC--CcchhHHHhhC-CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEc-ccCC----CCCCCCeeEE
Q 024008 107 LPKGRALVPGC--GTGYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKA-DFFT----WCPTELFDLI 178 (274)
Q Consensus 107 ~~~~~vLDiG~--G~G~~~~~l~~-~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~-d~~~----~~~~~~fD~v 178 (274)
.++.+||=.|+ |.|..+..+++ .|+++++++-+++..+.+++.+... .-+..... +..+ .. .+.+|+|
T Consensus 150 ~~g~~VlI~Ga~G~vG~~aiqlAk~~G~~Vi~~~~~~~~~~~~~~~lGa~---~vi~~~~~~~~~~~i~~~~-~~gvd~v 225 (338)
T cd08295 150 KKGETVFVSAASGAVGQLVGQLAKLKGCYVVGSAGSDEKVDLLKNKLGFD---DAFNYKEEPDLDAALKRYF-PNGIDIY 225 (338)
T ss_pred CCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCc---eeEEcCCcccHHHHHHHhC-CCCcEEE
Confidence 45678888885 56677777777 7889999998888888887633211 11111111 2211 12 2568999
Q ss_pred EecccccccChhHHHHHHHHHHhcccCCcEEEEEE
Q 024008 179 FDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLM 213 (274)
Q Consensus 179 ~~~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~ 213 (274)
+.. .. ...+....++|+++|.++...
T Consensus 226 ~d~-----~g----~~~~~~~~~~l~~~G~iv~~G 251 (338)
T cd08295 226 FDN-----VG----GKMLDAVLLNMNLHGRIAACG 251 (338)
T ss_pred EEC-----CC----HHHHHHHHHHhccCcEEEEec
Confidence 842 11 134578889999999988654
No 379
>PRK12939 short chain dehydrogenase; Provisional
Probab=83.08 E-value=17 Score=29.62 Aligned_cols=73 Identities=15% Similarity=-0.032 Sum_probs=47.3
Q ss_pred CCCeEEEEcCCcchhHHHh----hCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCC-----------C
Q 024008 108 PKGRALVPGCGTGYDVVAM----ASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP-----------T 172 (274)
Q Consensus 108 ~~~~vLDiG~G~G~~~~~l----~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~-----------~ 172 (274)
+++++|=.|+ +|..+..+ ++.|+++++++-+++.+..........+ .++.++.+|+.+... .
T Consensus 6 ~~~~vlItGa-~g~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 82 (250)
T PRK12939 6 AGKRALVTGA-ARGLGAAFAEALAEAGATVAFNDGLAAEARELAAALEAAG--GRAHAIAADLADPASVQRFFDAAAAAL 82 (250)
T ss_pred CCCEEEEeCC-CChHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHHHc
Confidence 3567887775 44444444 4478999999988876665555443332 468889999986211 1
Q ss_pred CCeeEEEeccc
Q 024008 173 ELFDLIFDYTF 183 (274)
Q Consensus 173 ~~fD~v~~~~~ 183 (274)
++.|.|+.+..
T Consensus 83 ~~id~vi~~ag 93 (250)
T PRK12939 83 GGLDGLVNNAG 93 (250)
T ss_pred CCCCEEEECCC
Confidence 46898887643
No 380
>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members. This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD
Probab=83.05 E-value=11 Score=31.45 Aligned_cols=92 Identities=18% Similarity=0.134 Sum_probs=55.5
Q ss_pred CCCCeEEEEcCCc-chhHHHhhC-CCCe-EEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCeeEEEeccc
Q 024008 107 LPKGRALVPGCGT-GYDVVAMAS-PERY-VVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTF 183 (274)
Q Consensus 107 ~~~~~vLDiG~G~-G~~~~~l~~-~~~~-v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~~ 183 (274)
.++.+||-.|||. |..+..+++ .|.+ +++++.+++..+.+++.-.. +.+..... .......+|+|+....
T Consensus 96 ~~g~~vlI~g~g~vg~~~i~~a~~~g~~~vi~~~~~~~~~~~~~~~g~~----~~~~~~~~---~~~~~~~~d~vl~~~~ 168 (277)
T cd08255 96 RLGERVAVVGLGLVGLLAAQLAKAAGAREVVGVDPDAARRELAEALGPA----DPVAADTA---DEIGGRGADVVIEASG 168 (277)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEECCCHHHHHHHHHcCCC----ccccccch---hhhcCCCCCEEEEccC
Confidence 3557888888764 555555555 6777 99999999888876654200 11110000 1113346898884211
Q ss_pred ccccChhHHHHHHHHHHhcccCCcEEEEEE
Q 024008 184 FCAIEPEMRAAWAQKIKDFLKPDGELITLM 213 (274)
Q Consensus 184 ~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~ 213 (274)
- ...+....++++++|.++...
T Consensus 169 ~--------~~~~~~~~~~l~~~g~~~~~g 190 (277)
T cd08255 169 S--------PSALETALRLLRDRGRVVLVG 190 (277)
T ss_pred C--------hHHHHHHHHHhcCCcEEEEEe
Confidence 0 124577888999999987654
No 381
>cd05285 sorbitol_DH Sorbitol dehydrogenase. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=83.00 E-value=4.2 Score=35.31 Aligned_cols=95 Identities=22% Similarity=0.185 Sum_probs=55.8
Q ss_pred CCCCeEEEEcCCc-chhHHHhhC-CCCe-EEEEeCChHHHHHHHHHhhcCCCCcceEEEEcc-------cCCCCCCCCee
Q 024008 107 LPKGRALVPGCGT-GYDVVAMAS-PERY-VVGLEISDIAIKKAEELSSSLPNAKFVSFLKAD-------FFTWCPTELFD 176 (274)
Q Consensus 107 ~~~~~vLDiG~G~-G~~~~~l~~-~~~~-v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d-------~~~~~~~~~fD 176 (274)
.++.+||-.|+|. |..+..+++ .|.+ +++++-+++..+.+++. +...-+.....+ +........+|
T Consensus 161 ~~g~~vlI~g~g~vG~~a~~lak~~G~~~v~~~~~~~~~~~~~~~~----g~~~vi~~~~~~~~~~~~~~~~~~~~~~~d 236 (343)
T cd05285 161 RPGDTVLVFGAGPIGLLTAAVAKAFGATKVVVTDIDPSRLEFAKEL----GATHTVNVRTEDTPESAEKIAELLGGKGPD 236 (343)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHc----CCcEEeccccccchhHHHHHHHHhCCCCCC
Confidence 4456777777654 555566666 6776 89998888877777553 111101111111 11123345699
Q ss_pred EEEecccccccChhHHHHHHHHHHhcccCCcEEEEEE
Q 024008 177 LIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLM 213 (274)
Q Consensus 177 ~v~~~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~ 213 (274)
+|+....- ...+....++|+++|.++...
T Consensus 237 ~vld~~g~--------~~~~~~~~~~l~~~G~~v~~g 265 (343)
T cd05285 237 VVIECTGA--------ESCIQTAIYATRPGGTVVLVG 265 (343)
T ss_pred EEEECCCC--------HHHHHHHHHHhhcCCEEEEEc
Confidence 99853221 124577889999999988654
No 382
>PF14740 DUF4471: Domain of unknown function (DUF4471)
Probab=82.71 E-value=0.81 Score=38.91 Aligned_cols=79 Identities=24% Similarity=0.355 Sum_probs=46.4
Q ss_pred ceEEEEcccCCCCC-----CCCeeEEEecccccc-cChhHHHHHHHHHHhcccCCcEEEEEEcc-CCCCCCCCCcccCHH
Q 024008 158 FVSFLKADFFTWCP-----TELFDLIFDYTFFCA-IEPEMRAAWAQKIKDFLKPDGELITLMFP-ISDHVGGPPYKVSVS 230 (274)
Q Consensus 158 ~v~~~~~d~~~~~~-----~~~fD~v~~~~~~~~-~~~~~~~~~l~~l~~~L~~gG~l~~~~~~-~~~~~~~~~~~~~~~ 230 (274)
+|.|+..|.....+ .+.||+|+......+ +. ..+..+++|++.|++.... +.+. .......-..
T Consensus 201 kVhFLPld~~~~L~~K~ky~~~Fd~ifvs~s~vh~L~--------p~l~~~~a~~A~LvvEtaKfmvdL-rKEq~~~F~~ 271 (289)
T PF14740_consen 201 KVHFLPLDSLEKLPHKSKYQNFFDLIFVSCSMVHFLK--------PELFQALAPDAVLVVETAKFMVDL-RKEQLQEFVK 271 (289)
T ss_pred EEEEeCchHHHHHhhHHhhcCCCCEEEEhhhhHhhcc--------hHHHHHhCCCCEEEEEcchhheeC-CHHHHHHHHH
Confidence 45666655544221 357999997654333 33 2377788999999886521 1110 0000111356
Q ss_pred HHHHHHhcCCCcEEE
Q 024008 231 DYEEVLQPMGFQAIS 245 (274)
Q Consensus 231 ~~~~~~~~~Gf~~~~ 245 (274)
.+.++++.+||+-+.
T Consensus 272 kv~eLA~~aG~~p~~ 286 (289)
T PF14740_consen 272 KVKELAKAAGFKPVT 286 (289)
T ss_pred HHHHHHHHCCCcccc
Confidence 788999999997643
No 383
>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases. This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=82.50 E-value=2.2 Score=37.20 Aligned_cols=95 Identities=17% Similarity=0.139 Sum_probs=55.1
Q ss_pred CCCCeEEEEcCC-cchhHHHhhC-CCC-eEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC----CCCCCCeeEEE
Q 024008 107 LPKGRALVPGCG-TGYDVVAMAS-PER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT----WCPTELFDLIF 179 (274)
Q Consensus 107 ~~~~~vLDiG~G-~G~~~~~l~~-~~~-~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~----~~~~~~fD~v~ 179 (274)
.++.+||-.|+| .|..+..+++ .|. .++++|.+++..+.+++.- ...-+.....+... ......+|+|+
T Consensus 165 ~~g~~vlI~g~g~iG~~~~~lak~~G~~~v~~~~~~~~~~~~~~~~g----~~~~v~~~~~~~~~~i~~~~~~~~~d~vl 240 (351)
T cd08285 165 KLGDTVAVFGIGPVGLMAVAGARLRGAGRIIAVGSRPNRVELAKEYG----ATDIVDYKNGDVVEQILKLTGGKGVDAVI 240 (351)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHcC----CceEecCCCCCHHHHHHHHhCCCCCcEEE
Confidence 345788888765 3344455555 677 5999999988887776532 11111111112111 12234689988
Q ss_pred ecccccccChhHHHHHHHHHHhcccCCcEEEEEE
Q 024008 180 DYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLM 213 (274)
Q Consensus 180 ~~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~ 213 (274)
.... . ...+..+.++|+++|.++...
T Consensus 241 d~~g-----~---~~~~~~~~~~l~~~G~~v~~g 266 (351)
T cd08285 241 IAGG-----G---QDTFEQALKVLKPGGTISNVN 266 (351)
T ss_pred ECCC-----C---HHHHHHHHHHhhcCCEEEEec
Confidence 4211 0 134678888999999988654
No 384
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=82.49 E-value=26 Score=28.78 Aligned_cols=60 Identities=20% Similarity=0.094 Sum_probs=39.6
Q ss_pred CCCCCeEEEEcCCcchhHH----HhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC
Q 024008 106 ALPKGRALVPGCGTGYDVV----AMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT 168 (274)
Q Consensus 106 ~~~~~~vLDiG~G~G~~~~----~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~ 168 (274)
..+++++|-.|++.| .+. .+++.|++|+.++-+++.+..........+ .++.++.+|+.+
T Consensus 8 ~~~~k~ilItGas~~-IG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~ 71 (256)
T PRK06124 8 SLAGQVALVTGSARG-LGFEIARALAGAGAHVLVNGRNAATLEAAVAALRAAG--GAAEALAFDIAD 71 (256)
T ss_pred CCCCCEEEEECCCch-HHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHhcC--CceEEEEccCCC
Confidence 345678888886544 333 344589999999998876665555444332 347777778754
No 385
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=82.43 E-value=5.4 Score=30.76 Aligned_cols=111 Identities=16% Similarity=0.049 Sum_probs=62.6
Q ss_pred eEEEEcCCcchhHHHh----hCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCeeEEEecccccc
Q 024008 111 RALVPGCGTGYDVVAM----ASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFCA 186 (274)
Q Consensus 111 ~vLDiG~G~G~~~~~l----~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~~~~~ 186 (274)
+|-=||+| ..+..+ ++.|..|++.|.+++..+...+.- ... ..+..+.. ...|+|+..-
T Consensus 3 ~Ig~IGlG--~mG~~~a~~L~~~g~~v~~~d~~~~~~~~~~~~g--------~~~-~~s~~e~~--~~~dvvi~~v---- 65 (163)
T PF03446_consen 3 KIGFIGLG--NMGSAMARNLAKAGYEVTVYDRSPEKAEALAEAG--------AEV-ADSPAEAA--EQADVVILCV---- 65 (163)
T ss_dssp EEEEE--S--HHHHHHHHHHHHTTTEEEEEESSHHHHHHHHHTT--------EEE-ESSHHHHH--HHBSEEEE-S----
T ss_pred EEEEEchH--HHHHHHHHHHHhcCCeEEeeccchhhhhhhHHhh--------hhh-hhhhhhHh--hcccceEeec----
Confidence 34456654 454444 448999999999998777665442 111 12222111 2348888431
Q ss_pred cChhHHHHHHHH--HHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcEEEEe
Q 024008 187 IEPEMRAAWAQK--IKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAISIV 247 (274)
Q Consensus 187 ~~~~~~~~~l~~--l~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gf~~~~~~ 247 (274)
-+++....++.. +...|++|..++-.. . ...-+..++.+.++..|...++..
T Consensus 66 ~~~~~v~~v~~~~~i~~~l~~g~iiid~s--T-------~~p~~~~~~~~~~~~~g~~~vdap 119 (163)
T PF03446_consen 66 PDDDAVEAVLFGENILAGLRPGKIIIDMS--T-------ISPETSRELAERLAAKGVRYVDAP 119 (163)
T ss_dssp SSHHHHHHHHHCTTHGGGS-TTEEEEE-S--S---------HHHHHHHHHHHHHTTEEEEEEE
T ss_pred ccchhhhhhhhhhHHhhccccceEEEecC--C-------cchhhhhhhhhhhhhccceeeeee
Confidence 233556677777 888888777665432 1 111256788888888896665544
No 386
>PRK05854 short chain dehydrogenase; Provisional
Probab=82.39 E-value=11 Score=32.49 Aligned_cols=77 Identities=14% Similarity=0.073 Sum_probs=50.5
Q ss_pred CCCeEEEEcCCcchh---HHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCC-----------CCC
Q 024008 108 PKGRALVPGCGTGYD---VVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC-----------PTE 173 (274)
Q Consensus 108 ~~~~vLDiG~G~G~~---~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-----------~~~ 173 (274)
.++++|=.|++.|.- +..|++.|++|+.+.-+.+..+.+.+.+....-..++.++.+|+.+.. ..+
T Consensus 13 ~gk~~lITGas~GIG~~~a~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dl~d~~sv~~~~~~~~~~~~ 92 (313)
T PRK05854 13 SGKRAVVTGASDGLGLGLARRLAAAGAEVILPVRNRAKGEAAVAAIRTAVPDAKLSLRALDLSSLASVAALGEQLRAEGR 92 (313)
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCCCceEEEEecCCCHHHHHHHHHHHHHhCC
Confidence 456888888766532 344555899999999888766666554433211235888999987621 124
Q ss_pred CeeEEEecccc
Q 024008 174 LFDLIFDYTFF 184 (274)
Q Consensus 174 ~fD~v~~~~~~ 184 (274)
+.|+++.+...
T Consensus 93 ~iD~li~nAG~ 103 (313)
T PRK05854 93 PIHLLINNAGV 103 (313)
T ss_pred CccEEEECCcc
Confidence 68999987543
No 387
>KOG1209 consensus 1-Acyl dihydroxyacetone phosphate reductase and related dehydrogenases [Secondary metabolites biosynthesis, transport and catabolism]
Probab=82.10 E-value=26 Score=28.63 Aligned_cols=69 Identities=17% Similarity=0.134 Sum_probs=44.8
Q ss_pred CCCCeEEEEcCCcchhHHHhhC----CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCC------------C
Q 024008 107 LPKGRALVPGCGTGYDVVAMAS----PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW------------C 170 (274)
Q Consensus 107 ~~~~~vLDiG~G~G~~~~~l~~----~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~------------~ 170 (274)
.++..||-.||..|..+.++++ .|+.|++.--+-+......... .+.....|+.+. .
T Consensus 5 ~~~k~VlItgcs~GGIG~ala~ef~~~G~~V~AtaR~~e~M~~L~~~~-------gl~~~kLDV~~~~~V~~v~~evr~~ 77 (289)
T KOG1209|consen 5 SQPKKVLITGCSSGGIGYALAKEFARNGYLVYATARRLEPMAQLAIQF-------GLKPYKLDVSKPEEVVTVSGEVRAN 77 (289)
T ss_pred cCCCeEEEeecCCcchhHHHHHHHHhCCeEEEEEccccchHhhHHHhh-------CCeeEEeccCChHHHHHHHHHHhhC
Confidence 3457899999999999887776 7889998765443333322221 244556666541 2
Q ss_pred CCCCeeEEEecc
Q 024008 171 PTELFDLIFDYT 182 (274)
Q Consensus 171 ~~~~fD~v~~~~ 182 (274)
+.++.|+.+.+.
T Consensus 78 ~~Gkld~L~NNA 89 (289)
T KOG1209|consen 78 PDGKLDLLYNNA 89 (289)
T ss_pred CCCceEEEEcCC
Confidence 557788887664
No 388
>PF06016 Reovirus_L2: Reovirus core-spike protein lambda-2 (L2); InterPro: IPR010311 This family consists of several Reovirus core-spike protein lambda-2 (L2) sequences. The reovirus L2 genome segment encodes the core spike protein lambda-2, which mediates enzymatic reactions in 5' capping of the viral plus-strand transcripts [].; GO: 0004482 mRNA (guanine-N7-)-methyltransferase activity, 0004484 mRNA guanylyltransferase activity, 0005524 ATP binding, 0006370 mRNA capping, 0019028 viral capsid; PDB: 1EJ6_A 3IYL_W 3K1Q_A.
Probab=82.04 E-value=6.1 Score=40.17 Aligned_cols=94 Identities=14% Similarity=0.143 Sum_probs=59.2
Q ss_pred CCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC--CCCCCCeeEEEeccccc
Q 024008 108 PKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT--WCPTELFDLIFDYTFFC 185 (274)
Q Consensus 108 ~~~~vLDiG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~--~~~~~~fD~v~~~~~~~ 185 (274)
.+.++||+|+|.-.=...+..+..-|+.+|.-|- ......+....+|++.|... ..-..++|.+.|...+.
T Consensus 822 ~~~~~lDLGTGPE~RiLsliP~~~pvtmvD~RP~-------ae~m~~w~t~T~y~~~DYl~~~~~~~~~~D~vtailSLG 894 (1289)
T PF06016_consen 822 DPDHWLDLGTGPECRILSLIPPDTPVTMVDTRPF-------AEPMNCWNTQTQYIQADYLSDAWWNGTPFDAVTAILSLG 894 (1289)
T ss_dssp CC-CEEEET--TT-CHHHCS-TTSEEEEEESS---------SSSCCCCSTTEEEEES-TTSCCGGCC---SEEEECTCHH
T ss_pred CcceEEEccCCccceeeeccCCCCceEEEecCCc-------ccccchhhhcceeeeeccccceeEecCCCCEEEEEeeeh
Confidence 3579999988887666666668889999999774 12334455678999999987 33456899999988776
Q ss_pred cc---ChhHHHHHHHHHHhcccCCcE
Q 024008 186 AI---EPEMRAAWAQKIKDFLKPDGE 208 (274)
Q Consensus 186 ~~---~~~~~~~~l~~l~~~L~~gG~ 208 (274)
.. ..-.+...++++.+.+++.|.
T Consensus 895 AAaA~a~~tl~~~l~~~l~~~~~~~~ 920 (1289)
T PF06016_consen 895 AAAASANVTLDAGLQQFLSQCVQANV 920 (1289)
T ss_dssp HHHHHCT--HHHHHHHHHHHHHCTT-
T ss_pred hhhhcCCCcHHHHHHHHHHHHHhCCc
Confidence 53 112456778888888888774
No 389
>cd05281 TDH Threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)- dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria) and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=81.99 E-value=3.9 Score=35.49 Aligned_cols=95 Identities=16% Similarity=0.251 Sum_probs=53.4
Q ss_pred CCCCeEEEEcCCc-chhHHHhhC-CCC-eEEEEeCChHHHHHHHHHhhcCCCCcceEEEEccc---CCCCCCCCeeEEEe
Q 024008 107 LPKGRALVPGCGT-GYDVVAMAS-PER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADF---FTWCPTELFDLIFD 180 (274)
Q Consensus 107 ~~~~~vLDiG~G~-G~~~~~l~~-~~~-~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~---~~~~~~~~fD~v~~ 180 (274)
.++.+||-.|+|. |..+..+++ .|. ++++++-+++....+++.-.. .-+.....++ .+....+.+|+|+.
T Consensus 162 ~~g~~vlV~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~~g~~----~~~~~~~~~~~~~~~~~~~~~vd~vld 237 (341)
T cd05281 162 VSGKSVLITGCGPIGLMAIAVAKAAGASLVIASDPNPYRLELAKKMGAD----VVINPREEDVVEVKSVTDGTGVDVVLE 237 (341)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCcc----eeeCcccccHHHHHHHcCCCCCCEEEE
Confidence 3556777766643 445555555 677 688887777766666543210 0011111111 12233457899985
Q ss_pred cccccccChhHHHHHHHHHHhcccCCcEEEEEE
Q 024008 181 YTFFCAIEPEMRAAWAQKIKDFLKPDGELITLM 213 (274)
Q Consensus 181 ~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~ 213 (274)
.-. . ...+..+.++|+++|.++...
T Consensus 238 ~~g----~----~~~~~~~~~~l~~~G~~v~~g 262 (341)
T cd05281 238 MSG----N----PKAIEQGLKALTPGGRVSILG 262 (341)
T ss_pred CCC----C----HHHHHHHHHHhccCCEEEEEc
Confidence 321 1 123567788999999987654
No 390
>PRK06139 short chain dehydrogenase; Provisional
Probab=81.86 E-value=17 Score=31.66 Aligned_cols=74 Identities=15% Similarity=0.062 Sum_probs=50.2
Q ss_pred CCCeEEEEcCCcchh---HHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCC-----------CCC
Q 024008 108 PKGRALVPGCGTGYD---VVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC-----------PTE 173 (274)
Q Consensus 108 ~~~~vLDiG~G~G~~---~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-----------~~~ 173 (274)
.+++||=.|++.|.- +..+++.|++|+.++-+++.++...+.+...+ .++.++.+|+.+.. ..+
T Consensus 6 ~~k~vlITGAs~GIG~aia~~la~~G~~Vvl~~R~~~~l~~~~~~~~~~g--~~~~~~~~Dv~d~~~v~~~~~~~~~~~g 83 (330)
T PRK06139 6 HGAVVVITGASSGIGQATAEAFARRGARLVLAARDEEALQAVAEECRALG--AEVLVVPTDVTDADQVKALATQAASFGG 83 (330)
T ss_pred CCCEEEEcCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC--CcEEEEEeeCCCHHHHHHHHHHHHHhcC
Confidence 456788888755422 33455589999999999888877666655443 35777888887621 125
Q ss_pred CeeEEEeccc
Q 024008 174 LFDLIFDYTF 183 (274)
Q Consensus 174 ~fD~v~~~~~ 183 (274)
++|+++.+..
T Consensus 84 ~iD~lVnnAG 93 (330)
T PRK06139 84 RIDVWVNNVG 93 (330)
T ss_pred CCCEEEECCC
Confidence 6899988754
No 391
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=81.80 E-value=14 Score=33.24 Aligned_cols=104 Identities=14% Similarity=0.067 Sum_probs=60.4
Q ss_pred CCCCeEEEEcCCc-chhHHHhhC-CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCeeEEEecccc
Q 024008 107 LPKGRALVPGCGT-GYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFF 184 (274)
Q Consensus 107 ~~~~~vLDiG~G~-G~~~~~l~~-~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~~~ 184 (274)
..+.+|+=+|+|. |......++ .|++|+++|.++.....+... + ..+. +..+.. ...|+|+....
T Consensus 193 l~Gk~VvViG~G~IG~~vA~~ak~~Ga~ViV~d~dp~r~~~A~~~----G----~~v~--~leeal--~~aDVVItaTG- 259 (406)
T TIGR00936 193 IAGKTVVVAGYGWCGKGIAMRARGMGARVIVTEVDPIRALEAAMD----G----FRVM--TMEEAA--KIGDIFITATG- 259 (406)
T ss_pred CCcCEEEEECCCHHHHHHHHHHhhCcCEEEEEeCChhhHHHHHhc----C----CEeC--CHHHHH--hcCCEEEECCC-
Confidence 5678999999987 333333333 688999999988654444321 2 1111 221111 34688875321
Q ss_pred cccChhHHHHHH-HHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhc
Q 024008 185 CAIEPEMRAAWA-QKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQP 238 (274)
Q Consensus 185 ~~~~~~~~~~~l-~~l~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (274)
. ..++ ......+++|++++...... ..++.+.+.+.+.+
T Consensus 260 ------~-~~vI~~~~~~~mK~GailiN~G~~~--------~eId~~aL~~~~~~ 299 (406)
T TIGR00936 260 ------N-KDVIRGEHFENMKDGAIVANIGHFD--------VEIDVKALEELAVE 299 (406)
T ss_pred ------C-HHHHHHHHHhcCCCCcEEEEECCCC--------ceeCHHHHHHHHhh
Confidence 1 2233 34788899999887765321 12456666665544
No 392
>PRK07063 short chain dehydrogenase; Provisional
Probab=81.78 E-value=28 Score=28.68 Aligned_cols=61 Identities=20% Similarity=0.095 Sum_probs=40.8
Q ss_pred CCCeEEEEcCCcch---hHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC
Q 024008 108 PKGRALVPGCGTGY---DVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT 168 (274)
Q Consensus 108 ~~~~vLDiG~G~G~---~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~ 168 (274)
.++++|-.|++.|. .+..|++.|++|+.++.+++.++...+.+...+...++.++.+|+.+
T Consensus 6 ~~k~vlVtGas~gIG~~~a~~l~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~ 69 (260)
T PRK07063 6 AGKVALVTGAAQGIGAAIARAFAREGAAVALADLDAALAERAAAAIARDVAGARVLAVPADVTD 69 (260)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhccCCceEEEEEccCCC
Confidence 45788888876542 23445558999999999888777666655432112457778888764
No 393
>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins. Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an
Probab=81.70 E-value=9.8 Score=32.67 Aligned_cols=94 Identities=20% Similarity=0.062 Sum_probs=56.2
Q ss_pred CCCCeEEEEcCC-cchhHHHhhC-CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCeeEEEecccc
Q 024008 107 LPKGRALVPGCG-TGYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFF 184 (274)
Q Consensus 107 ~~~~~vLDiG~G-~G~~~~~l~~-~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~~~ 184 (274)
.++.+||-.|+| .|..+..+++ .|.++++++.+++..+.+++.- . ..-+.....+.... ..+.+|+++....
T Consensus 161 ~~~~~vlI~g~g~iG~~~~~~a~~~G~~v~~~~~~~~~~~~~~~~g-~---~~~~~~~~~~~~~~-~~~~~d~vi~~~~- 234 (330)
T cd08245 161 RPGERVAVLGIGGLGHLAVQYARAMGFETVAITRSPDKRELARKLG-A---DEVVDSGAELDEQA-AAGGADVILVTVV- 234 (330)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhC-C---cEEeccCCcchHHh-ccCCCCEEEECCC-
Confidence 345688888886 6666666666 6889999999998887775422 1 00011111111101 1246898884311
Q ss_pred cccChhHHHHHHHHHHhcccCCcEEEEEE
Q 024008 185 CAIEPEMRAAWAQKIKDFLKPDGELITLM 213 (274)
Q Consensus 185 ~~~~~~~~~~~l~~l~~~L~~gG~l~~~~ 213 (274)
. ...+..+.+.|+++|.++...
T Consensus 235 ---~----~~~~~~~~~~l~~~G~~i~~~ 256 (330)
T cd08245 235 ---S----GAAAEAALGGLRRGGRIVLVG 256 (330)
T ss_pred ---c----HHHHHHHHHhcccCCEEEEEC
Confidence 0 124577788999999888764
No 394
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=81.63 E-value=19 Score=30.90 Aligned_cols=113 Identities=14% Similarity=0.076 Sum_probs=64.2
Q ss_pred eEEEEcCCcc--hhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCC-CCCCeeEEEeccccccc
Q 024008 111 RALVPGCGTG--YDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC-PTELFDLIFDYTFFCAI 187 (274)
Q Consensus 111 ~vLDiG~G~G--~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-~~~~fD~v~~~~~~~~~ 187 (274)
+|-=||+|.= ..+..+++.|.+|++.|.+++.++.+++.. . .. ..+..+.. .....|+|+.. +
T Consensus 2 ~Ig~IGlG~mG~~la~~L~~~g~~V~~~dr~~~~~~~l~~~g----~---~~--~~s~~~~~~~~~~~dvIi~~-----v 67 (298)
T TIGR00872 2 QLGLIGLGRMGANIVRRLAKRGHDCVGYDHDQDAVKAMKEDR----T---TG--VANLRELSQRLSAPRVVWVM-----V 67 (298)
T ss_pred EEEEEcchHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHcC----C---cc--cCCHHHHHhhcCCCCEEEEE-----c
Confidence 4556777652 234455568899999999998877766421 1 00 01211111 11235888743 3
Q ss_pred ChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcEEEE
Q 024008 188 EPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAISI 246 (274)
Q Consensus 188 ~~~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gf~~~~~ 246 (274)
++.....+++.+...+++|-.+ +.. +.. ...+..+..+.+++.|...++.
T Consensus 68 p~~~~~~v~~~l~~~l~~g~iv-id~-st~-------~~~~t~~~~~~~~~~g~~~vda 117 (298)
T TIGR00872 68 PHGIVDAVLEELAPTLEKGDIV-IDG-GNS-------YYKDSLRRYKLLKEKGIHLLDC 117 (298)
T ss_pred CchHHHHHHHHHHhhCCCCCEE-EEC-CCC-------CcccHHHHHHHHHhcCCeEEec
Confidence 3345567788888888887544 322 111 1124556666777778765443
No 395
>KOG0821 consensus Predicted ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=81.63 E-value=2.2 Score=34.74 Aligned_cols=60 Identities=17% Similarity=0.151 Sum_probs=44.5
Q ss_pred CCCCeEEEEcCCcchhHHHhhCCCC-eEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC
Q 024008 107 LPKGRALVPGCGTGYDVVAMASPER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT 168 (274)
Q Consensus 107 ~~~~~vLDiG~G~G~~~~~l~~~~~-~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~ 168 (274)
....-|.+||.|.|+.+..+...+. +...+|.++..+.-.+....... .+..+..+|+..
T Consensus 49 ~~~~~v~eIgPgpggitR~il~a~~~RL~vVE~D~RFip~LQ~L~EAa~--~~~~IHh~D~LR 109 (326)
T KOG0821|consen 49 LTNAYVYEIGPGPGGITRSILNADVARLLVVEKDTRFIPGLQMLSEAAP--GKLRIHHGDVLR 109 (326)
T ss_pred cccceeEEecCCCCchhHHHHhcchhheeeeeeccccChHHHHHhhcCC--cceEEeccccce
Confidence 3457899999999999999998776 78888998887776665554332 246666666653
No 396
>PRK06701 short chain dehydrogenase; Provisional
Probab=81.07 E-value=28 Score=29.49 Aligned_cols=105 Identities=14% Similarity=0.094 Sum_probs=58.9
Q ss_pred CCCCeEEEEcCCcch---hHHHhhCCCCeEEEEeCChH-HHHHHHHHhhcCCCCcceEEEEcccCCCCC-----------
Q 024008 107 LPKGRALVPGCGTGY---DVVAMASPERYVVGLEISDI-AIKKAEELSSSLPNAKFVSFLKADFFTWCP----------- 171 (274)
Q Consensus 107 ~~~~~vLDiG~G~G~---~~~~l~~~~~~v~~iD~s~~-~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~----------- 171 (274)
.+++++|-.|++.|. .+..+++.|++|+.++.++. ............+ .++.++.+|+.+...
T Consensus 44 ~~~k~iLItGasggIG~~la~~l~~~G~~V~l~~r~~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~i~~~ 121 (290)
T PRK06701 44 LKGKVALITGGDSGIGRAVAVLFAKEGADIAIVYLDEHEDANETKQRVEKEG--VKCLLIPGDVSDEAFCKDAVEETVRE 121 (290)
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcchHHHHHHHHHHhcC--CeEEEEEccCCCHHHHHHHHHHHHHH
Confidence 345688888875543 23445558999999887642 2333333333222 357888999876210
Q ss_pred CCCeeEEEecccccc-------cChhH-----------HHHHHHHHHhcccCCcEEEEEE
Q 024008 172 TELFDLIFDYTFFCA-------IEPEM-----------RAAWAQKIKDFLKPDGELITLM 213 (274)
Q Consensus 172 ~~~fD~v~~~~~~~~-------~~~~~-----------~~~~l~~l~~~L~~gG~l~~~~ 213 (274)
-.+.|+++.+..... .+.+. .-.+++.+.+.++++|.++...
T Consensus 122 ~~~iD~lI~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~a~~~~~~~~g~iV~is 181 (290)
T PRK06701 122 LGRLDILVNNAAFQYPQQSLEDITAEQLDKTFKTNIYSYFHMTKAALPHLKQGSAIINTG 181 (290)
T ss_pred cCCCCEEEECCcccCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHhhCCeEEEEe
Confidence 136798886643321 11111 1244455666666777766544
No 397
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=81.04 E-value=22 Score=30.57 Aligned_cols=101 Identities=12% Similarity=-0.036 Sum_probs=59.0
Q ss_pred CeEEEEcCCc--chhHHHhhCCCCeEEEEeCChHHHHHHHHH--hhcCCCCcceEEEEcccCCCCCCCCeeEEEeccccc
Q 024008 110 GRALVPGCGT--GYDVVAMASPERYVVGLEISDIAIKKAEEL--SSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFC 185 (274)
Q Consensus 110 ~~vLDiG~G~--G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~--~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~~~~ 185 (274)
++|+=+|+|. |.++..|++.|..|+.++-+.+.++..++. +..... ................+.||+|+..-=-
T Consensus 3 m~I~IiGaGaiG~~~a~~L~~~G~~V~lv~r~~~~~~~i~~~~Gl~i~~~-g~~~~~~~~~~~~~~~~~~D~viv~vK~- 80 (305)
T PRK05708 3 MTWHILGAGSLGSLWACRLARAGLPVRLILRDRQRLAAYQQAGGLTLVEQ-GQASLYAIPAETADAAEPIHRLLLACKA- 80 (305)
T ss_pred ceEEEECCCHHHHHHHHHHHhCCCCeEEEEechHHHHHHhhcCCeEEeeC-CcceeeccCCCCcccccccCEEEEECCH-
Confidence 4788899885 345566777888999999887666655542 111000 0111111111112223578988843111
Q ss_pred ccChhHHHHHHHHHHhcccCCcEEEEEEccC
Q 024008 186 AIEPEMRAAWAQKIKDFLKPDGELITLMFPI 216 (274)
Q Consensus 186 ~~~~~~~~~~l~~l~~~L~~gG~l~~~~~~~ 216 (274)
.....++..+...+.++..++....+.
T Consensus 81 ----~~~~~al~~l~~~l~~~t~vv~lQNGv 107 (305)
T PRK05708 81 ----YDAEPAVASLAHRLAPGAELLLLQNGL 107 (305)
T ss_pred ----HhHHHHHHHHHhhCCCCCEEEEEeCCC
Confidence 134567888999999999887776554
No 398
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=80.93 E-value=2.8 Score=36.50 Aligned_cols=96 Identities=16% Similarity=0.153 Sum_probs=53.8
Q ss_pred CCCCeEEEEcCCc-chhHHHhhC-CCCe-EEEEeCChHHHHHHHHHhhcCCCCcceEEEEcc---cCCCCCCCCee-EEE
Q 024008 107 LPKGRALVPGCGT-GYDVVAMAS-PERY-VVGLEISDIAIKKAEELSSSLPNAKFVSFLKAD---FFTWCPTELFD-LIF 179 (274)
Q Consensus 107 ~~~~~vLDiG~G~-G~~~~~l~~-~~~~-v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d---~~~~~~~~~fD-~v~ 179 (274)
.++.+||=.|+|. |..+..+++ .|.+ +++++.+++..+.+++.-.. .-+.....+ +........+| +|+
T Consensus 159 ~~g~~vlV~G~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~Ga~----~~i~~~~~~~~~~~~~~~~~~~d~~v~ 234 (347)
T PRK10309 159 CEGKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDINSEKLALAKSLGAM----QTFNSREMSAPQIQSVLRELRFDQLIL 234 (347)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHcCCc----eEecCcccCHHHHHHHhcCCCCCeEEE
Confidence 3457888887643 233344454 6775 78999999888877543210 001111111 11122234577 655
Q ss_pred ecccccccChhHHHHHHHHHHhcccCCcEEEEEEc
Q 024008 180 DYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMF 214 (274)
Q Consensus 180 ~~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~ 214 (274)
.. ... ...+....++|++||.+++...
T Consensus 235 d~-----~G~---~~~~~~~~~~l~~~G~iv~~G~ 261 (347)
T PRK10309 235 ET-----AGV---PQTVELAIEIAGPRAQLALVGT 261 (347)
T ss_pred EC-----CCC---HHHHHHHHHHhhcCCEEEEEcc
Confidence 31 111 2356778899999999887653
No 399
>KOG4174 consensus Uncharacterized conserved protein [Function unknown]
Probab=80.92 E-value=14 Score=30.72 Aligned_cols=134 Identities=13% Similarity=0.102 Sum_probs=79.6
Q ss_pred CeEEEEcCCcchhHHHhhC-CC---CeEEEEeCChHHHH------HHHHHhhcCCCCcceEEEEcccCC-----CCCCCC
Q 024008 110 GRALVPGCGTGYDVVAMAS-PE---RYVVGLEISDIAIK------KAEELSSSLPNAKFVSFLKADFFT-----WCPTEL 174 (274)
Q Consensus 110 ~~vLDiG~G~G~~~~~l~~-~~---~~v~~iD~s~~~~~------~a~~~~~~~~~~~~v~~~~~d~~~-----~~~~~~ 174 (274)
.+||.+|=|.=..+..|+. -| ..+++..++....+ .++.++.....-+-.-+...|+.. ...-.+
T Consensus 58 ~~ill~gEgdFSfs~sl~~~~g~sa~ni~atSlDsk~~dl~~KY~~~~~nv~~Lk~lG~~I~h~Vdv~sl~~~~~~~~~~ 137 (282)
T KOG4174|consen 58 QKILLVGEGDFSFSLSLAPHFGRSAGNITATSLDSKEFDLKQKYPDAKENVEALKRLGGTILHGVDVTSLKFHADLRLQR 137 (282)
T ss_pred ccEEEecccchhhHHHHHHHhCccccceeeeeccchhhhhhhcccchHHHHHHHHHcCCceEecccceeEEecccccccc
Confidence 5899998877777777776 22 25555555443322 123332211000111223334444 123468
Q ss_pred eeEEEeccccccc-------------ChhHHHHHHHHHHhccc-CCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCC
Q 024008 175 FDLIFDYTFFCAI-------------EPEMRAAWAQKIKDFLK-PDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMG 240 (274)
Q Consensus 175 fD~v~~~~~~~~~-------------~~~~~~~~l~~l~~~L~-~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G 240 (274)
||-||.+.+.... .......+++.+...|+ ..|.|.+.... .+.+++-.+..+.++.|
T Consensus 138 ~d~IiFNFPH~G~g~~~e~d~~~i~~~qkL~rgFle~akemL~~edGeI~itlk~--------t~P~~~W~ik~Lak~~g 209 (282)
T KOG4174|consen 138 YDNIIFNFPHSGKGIKFEQDRNIIPLHQKLFRGFLESAKEMLKDEDGEIHITLKT--------TYPFNPWNIKFLAKEFG 209 (282)
T ss_pred cceEEEcCCCCCCCcccccchHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEecc--------CCCCchhhhhHhhhhcc
Confidence 9999987554332 12345678889999999 78998887532 24457788999999999
Q ss_pred CcEEEEeeccc
Q 024008 241 FQAISIVDNKL 251 (274)
Q Consensus 241 f~~~~~~~~~~ 251 (274)
++.........
T Consensus 210 l~L~~~skF~~ 220 (282)
T KOG4174|consen 210 LTLLEDSKFEK 220 (282)
T ss_pred ccchhcccchh
Confidence 98877665443
No 400
>PRK07806 short chain dehydrogenase; Provisional
Probab=80.84 E-value=28 Score=28.34 Aligned_cols=103 Identities=15% Similarity=0.009 Sum_probs=56.7
Q ss_pred CCCeEEEEcCCcchhH----HHhhCCCCeEEEEeCCh-HHHHHHHHHhhcCCCCcceEEEEcccCCCCC-----------
Q 024008 108 PKGRALVPGCGTGYDV----VAMASPERYVVGLEISD-IAIKKAEELSSSLPNAKFVSFLKADFFTWCP----------- 171 (274)
Q Consensus 108 ~~~~vLDiG~G~G~~~----~~l~~~~~~v~~iD~s~-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~----------- 171 (274)
+++++|-.|++.| .+ ..+++.|.+|++++-+. ...+.....+...+ .++.++.+|+.+...
T Consensus 5 ~~k~vlItGasgg-iG~~l~~~l~~~G~~V~~~~r~~~~~~~~~~~~l~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~ 81 (248)
T PRK07806 5 PGKTALVTGSSRG-IGADTAKILAGAGAHVVVNYRQKAPRANKVVAEIEAAG--GRASAVGADLTDEESVAALMDTAREE 81 (248)
T ss_pred CCcEEEEECCCCc-HHHHHHHHHHHCCCEEEEEeCCchHhHHHHHHHHHhcC--CceEEEEcCCCCHHHHHHHHHHHHHh
Confidence 3568888886443 33 33445788998887654 23333333332222 357888899876211
Q ss_pred CCCeeEEEeccccccc---Ch--------hHHHHHHHHHHhcccCCcEEEEEE
Q 024008 172 TELFDLIFDYTFFCAI---EP--------EMRAAWAQKIKDFLKPDGELITLM 213 (274)
Q Consensus 172 ~~~fD~v~~~~~~~~~---~~--------~~~~~~l~~l~~~L~~gG~l~~~~ 213 (274)
.+..|+++.+...... ++ .-...+++.+.+.++.+|.++...
T Consensus 82 ~~~~d~vi~~ag~~~~~~~~~~~~~~vn~~~~~~l~~~~~~~~~~~~~iv~is 134 (248)
T PRK07806 82 FGGLDALVLNASGGMESGMDEDYAMRLNRDAQRNLARAALPLMPAGSRVVFVT 134 (248)
T ss_pred CCCCcEEEECCCCCCCCCCCcceeeEeeeHHHHHHHHHHHhhccCCceEEEEe
Confidence 1357888866432211 00 112355666776666667666543
No 401
>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]
Probab=80.81 E-value=13 Score=32.12 Aligned_cols=98 Identities=18% Similarity=0.130 Sum_probs=59.2
Q ss_pred CCCCeEEEEc-CCcchhHHHhhC-CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEE-EcccCC-C--CCCCCeeEEEe
Q 024008 107 LPKGRALVPG-CGTGYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFL-KADFFT-W--CPTELFDLIFD 180 (274)
Q Consensus 107 ~~~~~vLDiG-~G~G~~~~~l~~-~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~-~~d~~~-~--~~~~~fD~v~~ 180 (274)
.|+.+|-=+| +|-|..+..+++ .|.+|+++|-+..--+.+-+.+.... -+.+. ..|..+ . .-+...|.|..
T Consensus 180 ~pG~~vgI~GlGGLGh~aVq~AKAMG~rV~vis~~~~kkeea~~~LGAd~---fv~~~~d~d~~~~~~~~~dg~~~~v~~ 256 (360)
T KOG0023|consen 180 GPGKWVGIVGLGGLGHMAVQYAKAMGMRVTVISTSSKKKEEAIKSLGADV---FVDSTEDPDIMKAIMKTTDGGIDTVSN 256 (360)
T ss_pred CCCcEEEEecCcccchHHHHHHHHhCcEEEEEeCCchhHHHHHHhcCcce---eEEecCCHHHHHHHHHhhcCcceeeee
Confidence 3556554444 358889998888 79999999998766666655553321 12222 223222 1 11233455442
Q ss_pred cccccccChhHHHHHHHHHHhcccCCcEEEEEEccCC
Q 024008 181 YTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPIS 217 (274)
Q Consensus 181 ~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~~~~ 217 (274)
. + ...++.+.++||++|.++++..+..
T Consensus 257 ~-a---------~~~~~~~~~~lk~~Gt~V~vg~p~~ 283 (360)
T KOG0023|consen 257 L-A---------EHALEPLLGLLKVNGTLVLVGLPEK 283 (360)
T ss_pred c-c---------ccchHHHHHHhhcCCEEEEEeCcCC
Confidence 2 1 2235778899999999998876654
No 402
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=80.68 E-value=14 Score=33.01 Aligned_cols=67 Identities=22% Similarity=0.105 Sum_probs=47.0
Q ss_pred CeEEEEcCCcchhHHHh----hCCC-CeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCC----CCCeeEEEe
Q 024008 110 GRALVPGCGTGYDVVAM----ASPE-RYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP----TELFDLIFD 180 (274)
Q Consensus 110 ~~vLDiG~G~G~~~~~l----~~~~-~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~----~~~fD~v~~ 180 (274)
++||=||| |..+... ++.+ .+|+..|-+.+.++.+...... +++..+.|+.+... -..+|+|+.
T Consensus 2 ~~ilviGa--G~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~~-----~v~~~~vD~~d~~al~~li~~~d~VIn 74 (389)
T COG1748 2 MKILVIGA--GGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIGG-----KVEALQVDAADVDALVALIKDFDLVIN 74 (389)
T ss_pred CcEEEECC--chhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhccc-----cceeEEecccChHHHHHHHhcCCEEEE
Confidence 47899999 4444333 4455 7999999999988888776533 58899999876311 145699986
Q ss_pred ccc
Q 024008 181 YTF 183 (274)
Q Consensus 181 ~~~ 183 (274)
...
T Consensus 75 ~~p 77 (389)
T COG1748 75 AAP 77 (389)
T ss_pred eCC
Confidence 543
No 403
>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1.3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.
Probab=80.28 E-value=5.7 Score=33.31 Aligned_cols=73 Identities=19% Similarity=0.187 Sum_probs=43.2
Q ss_pred HHHhhCCC--CeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCeeEEEecccccccChhHHHHHHHHHH
Q 024008 123 VVAMASPE--RYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFCAIEPEMRAAWAQKIK 200 (274)
Q Consensus 123 ~~~l~~~~--~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~~~~~~~~~~~~~~l~~l~ 200 (274)
+..|.+.| .+|+|+|.++..++.|.+.-. +.-...+ .+.. ..+|+|+.. .|......+++++.
T Consensus 2 A~aL~~~g~~~~v~g~d~~~~~~~~a~~~g~-------~~~~~~~-~~~~--~~~Dlvvla-----vP~~~~~~~l~~~~ 66 (258)
T PF02153_consen 2 ALALRKAGPDVEVYGYDRDPETLEAALELGI-------IDEASTD-IEAV--EDADLVVLA-----VPVSAIEDVLEEIA 66 (258)
T ss_dssp HHHHHHTTTTSEEEEE-SSHHHHHHHHHTTS-------SSEEESH-HHHG--GCCSEEEE------S-HHHHHHHHHHHH
T ss_pred hHHHHhCCCCeEEEEEeCCHHHHHHHHHCCC-------eeeccCC-HhHh--cCCCEEEEc-----CCHHHHHHHHHHhh
Confidence 44566655 699999999999888865421 1122222 1111 345988854 34455667788888
Q ss_pred hcccCCcEEE
Q 024008 201 DFLKPDGELI 210 (274)
Q Consensus 201 ~~L~~gG~l~ 210 (274)
..+++|+.+.
T Consensus 67 ~~~~~~~iv~ 76 (258)
T PF02153_consen 67 PYLKPGAIVT 76 (258)
T ss_dssp CGS-TTSEEE
T ss_pred hhcCCCcEEE
Confidence 8888776655
No 404
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=79.80 E-value=6.4 Score=35.09 Aligned_cols=45 Identities=9% Similarity=0.005 Sum_probs=34.5
Q ss_pred CCCCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHh
Q 024008 106 ALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELS 150 (274)
Q Consensus 106 ~~~~~~vLDiG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~ 150 (274)
..++++||-|.+|--..+..+.....+|++||+||.+....+-+.
T Consensus 33 i~~~d~vl~ItSaG~N~L~yL~~~P~~I~aVDlNp~Q~aLleLKl 77 (380)
T PF11899_consen 33 IGPDDRVLTITSAGCNALDYLLAGPKRIHAVDLNPAQNALLELKL 77 (380)
T ss_pred CCCCCeEEEEccCCchHHHHHhcCCceEEEEeCCHHHHHHHHHHH
Confidence 456789999977655555566666789999999999988876654
No 405
>PRK10537 voltage-gated potassium channel; Provisional
Probab=79.77 E-value=7.6 Score=34.80 Aligned_cols=105 Identities=10% Similarity=0.030 Sum_probs=61.0
Q ss_pred CCeEEEEcCCcchhHHHh----hCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCC-----CCCCCeeEEE
Q 024008 109 KGRALVPGCGTGYDVVAM----ASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW-----CPTELFDLIF 179 (274)
Q Consensus 109 ~~~vLDiG~G~G~~~~~l----~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-----~~~~~fD~v~ 179 (274)
..+++=+|+|. .+..+ .+.+..++.+|.+.. + +.. . .+..++.+|..+. ..-++.+.|+
T Consensus 240 k~HvII~G~g~--lg~~v~~~L~~~g~~vvVId~d~~--~---~~~-~----~g~~vI~GD~td~e~L~~AgI~~A~aVI 307 (393)
T PRK10537 240 KDHFIICGHSP--LAINTYLGLRQRGQAVTVIVPLGL--E---HRL-P----DDADLIPGDSSDSAVLKKAGAARARAIL 307 (393)
T ss_pred CCeEEEECCCh--HHHHHHHHHHHCCCCEEEEECchh--h---hhc-c----CCCcEEEeCCCCHHHHHhcCcccCCEEE
Confidence 35677776654 44433 346778999997521 1 111 1 2467899999762 1224567776
Q ss_pred ecccccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcEE
Q 024008 180 DYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAI 244 (274)
Q Consensus 180 ~~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gf~~~ 244 (274)
+. .+++.....+-...+.+.|+..++... ..++-.+.++.+|-+.+
T Consensus 308 ~~-----t~dD~~Nl~ivL~ar~l~p~~kIIa~v--------------~~~~~~~~L~~~GaD~V 353 (393)
T PRK10537 308 AL-----RDNDADNAFVVLAAKEMSSDVKTVAAV--------------NDSKNLEKIKRVHPDMI 353 (393)
T ss_pred Ec-----CCChHHHHHHHHHHHHhCCCCcEEEEE--------------CCHHHHHHHHhcCCCEE
Confidence 42 222333344455677788888888766 23344566666676543
No 406
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=79.60 E-value=13 Score=31.83 Aligned_cols=87 Identities=21% Similarity=0.091 Sum_probs=49.9
Q ss_pred CeEEEEcCCcc--hhHHHhhCCCC--eEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCeeEEEeccccc
Q 024008 110 GRALVPGCGTG--YDVVAMASPER--YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFC 185 (274)
Q Consensus 110 ~~vLDiG~G~G--~~~~~l~~~~~--~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~~~~ 185 (274)
.+|.=||+|.= ..+..+.+.|. +|+++|.+++..+.+++. +.. .. ...+..+. -...|+|+..-.
T Consensus 7 ~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~~~----g~~--~~-~~~~~~~~--~~~aDvViiavp-- 75 (307)
T PRK07502 7 DRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSAETRARAREL----GLG--DR-VTTSAAEA--VKGADLVILCVP-- 75 (307)
T ss_pred cEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHhC----CCC--ce-ecCCHHHH--hcCCCEEEECCC--
Confidence 47888988762 23344555563 899999999877776542 110 11 11121111 135688885432
Q ss_pred ccChhHHHHHHHHHHhcccCCcEEE
Q 024008 186 AIEPEMRAAWAQKIKDFLKPDGELI 210 (274)
Q Consensus 186 ~~~~~~~~~~l~~l~~~L~~gG~l~ 210 (274)
......++..+...+++|+.++
T Consensus 76 ---~~~~~~v~~~l~~~l~~~~iv~ 97 (307)
T PRK07502 76 ---VGASGAVAAEIAPHLKPGAIVT 97 (307)
T ss_pred ---HHHHHHHHHHHHhhCCCCCEEE
Confidence 2333556677777788877554
No 407
>PRK08594 enoyl-(acyl carrier protein) reductase; Provisional
Probab=79.43 E-value=34 Score=28.30 Aligned_cols=72 Identities=7% Similarity=-0.048 Sum_probs=43.6
Q ss_pred CCCeEEEEcCCc-chhH----HHhhCCCCeEEEEeCCh---HHHHHHHHHhhcCCCCcceEEEEcccCCCC---------
Q 024008 108 PKGRALVPGCGT-GYDV----VAMASPERYVVGLEISD---IAIKKAEELSSSLPNAKFVSFLKADFFTWC--------- 170 (274)
Q Consensus 108 ~~~~vLDiG~G~-G~~~----~~l~~~~~~v~~iD~s~---~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--------- 170 (274)
.++.+|-.|++. +..+ ..|++.|++|+.++.+. +.++...+... + .++.++.+|+.+..
T Consensus 6 ~~k~~lItGa~~s~GIG~aia~~la~~G~~v~~~~r~~~~~~~~~~~~~~~~--~--~~~~~~~~Dv~d~~~v~~~~~~~ 81 (257)
T PRK08594 6 EGKTYVVMGVANKRSIAWGIARSLHNAGAKLVFTYAGERLEKEVRELADTLE--G--QESLLLPCDVTSDEEITACFETI 81 (257)
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHCCCEEEEecCcccchHHHHHHHHHcC--C--CceEEEecCCCCHHHHHHHHHHH
Confidence 457889999762 4444 34455899998886542 33333333221 1 35778889987621
Q ss_pred --CCCCeeEEEeccc
Q 024008 171 --PTELFDLIFDYTF 183 (274)
Q Consensus 171 --~~~~fD~v~~~~~ 183 (274)
..+++|+++.+..
T Consensus 82 ~~~~g~ld~lv~nag 96 (257)
T PRK08594 82 KEEVGVIHGVAHCIA 96 (257)
T ss_pred HHhCCCccEEEECcc
Confidence 1257899887643
No 408
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=79.19 E-value=9 Score=33.31 Aligned_cols=96 Identities=15% Similarity=0.020 Sum_probs=57.4
Q ss_pred CeEEEEcCCc--chhHHHhhCCCCeEEEEeCChHHHHHHHHHhhc-------CCCC-----cceEEEEcccCCCCCCCCe
Q 024008 110 GRALVPGCGT--GYDVVAMASPERYVVGLEISDIAIKKAEELSSS-------LPNA-----KFVSFLKADFFTWCPTELF 175 (274)
Q Consensus 110 ~~vLDiG~G~--G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~-------~~~~-----~~v~~~~~d~~~~~~~~~f 175 (274)
.+|-=||+|+ ..++..++..|..|+.+|.+++.++.++..+.. .+.. .++.+.. |+.+. -...
T Consensus 8 ~~VaVIGaG~MG~giA~~~a~aG~~V~l~D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~-~l~~a--v~~a 84 (321)
T PRK07066 8 KTFAAIGSGVIGSGWVARALAHGLDVVAWDPAPGAEAALRANVANAWPALERQGLAPGASPARLRFVA-TIEAC--VADA 84 (321)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhceecC-CHHHH--hcCC
Confidence 5788898884 344455667899999999999988776554321 1110 1222221 21111 1356
Q ss_pred eEEEecccccccChhHHHHHHHHHHhcccCCcEEEE
Q 024008 176 DLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELIT 211 (274)
Q Consensus 176 D~v~~~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~ 211 (274)
|+|+-+ +.+.+ +....++.++.+.++|+.+|..
T Consensus 85 DlViEa-vpE~l--~vK~~lf~~l~~~~~~~aIlaS 117 (321)
T PRK07066 85 DFIQES-APERE--ALKLELHERISRAAKPDAIIAS 117 (321)
T ss_pred CEEEEC-CcCCH--HHHHHHHHHHHHhCCCCeEEEE
Confidence 888743 22322 3456778899999998874443
No 409
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=79.02 E-value=11 Score=32.89 Aligned_cols=92 Identities=14% Similarity=0.054 Sum_probs=55.1
Q ss_pred CCCCeEEEEcCCcch-hHHHhhC--C-CCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCeeEEEecc
Q 024008 107 LPKGRALVPGCGTGY-DVVAMAS--P-ERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYT 182 (274)
Q Consensus 107 ~~~~~vLDiG~G~G~-~~~~l~~--~-~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~ 182 (274)
.++.+||=+|||.=. .+..+++ . +.+++++|.+++.++.++. + + .. ....+. .....+|+|+..-
T Consensus 162 ~~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~-~---~---~~-~~~~~~---~~~~g~d~viD~~ 230 (341)
T cd08237 162 KDRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSF-A---D---ET-YLIDDI---PEDLAVDHAFECV 230 (341)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhh-c---C---ce-eehhhh---hhccCCcEEEECC
Confidence 456799999975422 3344444 3 4589999999988888864 2 1 11 111111 1112489888432
Q ss_pred cccccChhHHHHHHHHHHhcccCCcEEEEEEc
Q 024008 183 FFCAIEPEMRAAWAQKIKDFLKPDGELITLMF 214 (274)
Q Consensus 183 ~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~ 214 (274)
- . ......+....++|++||++++...
T Consensus 231 G--~---~~~~~~~~~~~~~l~~~G~iv~~G~ 257 (341)
T cd08237 231 G--G---RGSQSAINQIIDYIRPQGTIGLMGV 257 (341)
T ss_pred C--C---CccHHHHHHHHHhCcCCcEEEEEee
Confidence 1 1 0012456788899999999887654
No 410
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=78.95 E-value=4 Score=36.26 Aligned_cols=99 Identities=13% Similarity=0.163 Sum_probs=52.6
Q ss_pred CCCeEEEEcCC-cchhHHHhhC-CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCC-CCCCCeeEEEecccc
Q 024008 108 PKGRALVPGCG-TGYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW-CPTELFDLIFDYTFF 184 (274)
Q Consensus 108 ~~~~vLDiG~G-~G~~~~~l~~-~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~~~~~fD~v~~~~~~ 184 (274)
++.+|+=+|+| .|..+...+. .|++|+++|.+++..+.+...... .+.....+.... ..-..+|+|+....+
T Consensus 166 ~~~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~~~~~~~l~~~~g~-----~v~~~~~~~~~l~~~l~~aDvVI~a~~~ 240 (370)
T TIGR00518 166 EPGDVTIIGGGVVGTNAAKMANGLGATVTILDINIDRLRQLDAEFGG-----RIHTRYSNAYEIEDAVKRADLLIGAVLI 240 (370)
T ss_pred CCceEEEEcCCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHhcCc-----eeEeccCCHHHHHHHHccCCEEEEcccc
Confidence 45789999887 3444444333 688999999998877666544321 111111111110 001468999965322
Q ss_pred cccChhHHHHHHHHHHhcccCCcEEEEEE
Q 024008 185 CAIEPEMRAAWAQKIKDFLKPDGELITLM 213 (274)
Q Consensus 185 ~~~~~~~~~~~l~~l~~~L~~gG~l~~~~ 213 (274)
..-..+ .-+-.++.+.+++|+.++-..
T Consensus 241 ~g~~~p--~lit~~~l~~mk~g~vIvDva 267 (370)
T TIGR00518 241 PGAKAP--KLVSNSLVAQMKPGAVIVDVA 267 (370)
T ss_pred CCCCCC--cCcCHHHHhcCCCCCEEEEEe
Confidence 111001 012245556789998877544
No 411
>PF03514 GRAS: GRAS domain family; InterPro: IPR005202 Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable N terminus and a highly conserved C terminus that contains five recognizable motifs []. Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction []. GRAS proteins contain a conserved region of about 350 amino acids that can be divided in 5 motifs, found in the following order: leucine heptad repeat I, the VHIID motif, leucine heptad repeat II, the PFYRE motif and the SAW motif [, ]. Plant specific GRAS proteins have parallels in their motif structure to the animal Signal Transducers and Activators of Transcription (STAT) family of proteins [] which suggests also some parallels in their functions.
Probab=78.95 E-value=32 Score=30.65 Aligned_cols=45 Identities=20% Similarity=0.223 Sum_probs=31.8
Q ss_pred CCCeEEEEcCCcchhHH----HhhC-----CCCeEEEEeC----ChHHHHHHHHHhhc
Q 024008 108 PKGRALVPGCGTGYDVV----AMAS-----PERYVVGLEI----SDIAIKKAEELSSS 152 (274)
Q Consensus 108 ~~~~vLDiG~G~G~~~~----~l~~-----~~~~v~~iD~----s~~~~~~a~~~~~~ 152 (274)
+.-+|+|+|.|.|.--. .|+. +..++|+|+. +...++.+.+++..
T Consensus 110 ~~vHIID~~i~~G~QW~~LiqaLa~R~~gpp~LrIT~i~~~~~~~~~~l~~~g~rL~~ 167 (374)
T PF03514_consen 110 RRVHIIDFGIGFGVQWPSLIQALASRPGGPPSLRITGIGPPNSGSADELQETGRRLAE 167 (374)
T ss_pred cceEEEeccCCcchHHHHHHHHHhcCCCCCCeEEEEeccCCCCCcHHHHHHHHHHHHH
Confidence 34699999999996543 3333 2248999999 77777777766544
No 412
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=78.89 E-value=21 Score=30.17 Aligned_cols=94 Identities=19% Similarity=0.148 Sum_probs=55.1
Q ss_pred eEEEEcCCc--chhHHHhhCCCCeEEEEeCChHHHHHHHHHh-------hcCC-CC--------cceEEEEcccCCCCCC
Q 024008 111 RALVPGCGT--GYDVVAMASPERYVVGLEISDIAIKKAEELS-------SSLP-NA--------KFVSFLKADFFTWCPT 172 (274)
Q Consensus 111 ~vLDiG~G~--G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~-------~~~~-~~--------~~v~~~~~d~~~~~~~ 172 (274)
+|.=||+|. +.++..++..|.+|+++|.+++.++.++..+ ...+ .. .++.+ ..|.. .-
T Consensus 5 kI~VIG~G~mG~~ia~~la~~g~~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~~-~~~~~---~~ 80 (282)
T PRK05808 5 KIGVIGAGTMGNGIAQVCAVAGYDVVMVDISDAAVDRGLATITKSLDRLVKKGKMTEADKEAALARITG-TTDLD---DL 80 (282)
T ss_pred EEEEEccCHHHHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEE-eCCHH---Hh
Confidence 577788873 3444556668889999999999987655322 1121 00 02221 22321 12
Q ss_pred CCeeEEEecccccccChhHHHHHHHHHHhcccCCcEEEE
Q 024008 173 ELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELIT 211 (274)
Q Consensus 173 ~~fD~v~~~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~ 211 (274)
...|+|+..-. .. .+....++.++.+.++++..+..
T Consensus 81 ~~aDlVi~av~-e~--~~~k~~~~~~l~~~~~~~~il~s 116 (282)
T PRK05808 81 KDADLVIEAAT-EN--MDLKKKIFAQLDEIAKPEAILAT 116 (282)
T ss_pred ccCCeeeeccc-cc--HHHHHHHHHHHHhhCCCCcEEEE
Confidence 45788874311 11 12335788899999998887744
No 413
>cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu
Probab=78.59 E-value=6 Score=34.83 Aligned_cols=90 Identities=24% Similarity=0.308 Sum_probs=54.9
Q ss_pred CCCeEEEEcCCc-chhHHHhhC-CCC-eEEEEeCChHHHHHHHHHhhcCCCCcceEEEEc---ccCC----CCCCCCeeE
Q 024008 108 PKGRALVPGCGT-GYDVVAMAS-PER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKA---DFFT----WCPTELFDL 177 (274)
Q Consensus 108 ~~~~vLDiG~G~-G~~~~~l~~-~~~-~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~---d~~~----~~~~~~fD~ 177 (274)
++.+||-.|+|. |..+..+++ .|. .++++|.++...+.+++.-. ..++.. ++.. .. ...+|+
T Consensus 186 ~g~~vlI~g~g~vG~~~~~la~~~G~~~v~~~~~~~~k~~~~~~~g~-------~~~i~~~~~~~~~~v~~~~-~~~~d~ 257 (365)
T cd08278 186 PGSSIAVFGAGAVGLAAVMAAKIAGCTTIIAVDIVDSRLELAKELGA-------THVINPKEEDLVAAIREIT-GGGVDY 257 (365)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHcCC-------cEEecCCCcCHHHHHHHHh-CCCCcE
Confidence 457888887643 455555665 677 69999999988877765321 111111 1111 12 356899
Q ss_pred EEecccccccChhHHHHHHHHHHhcccCCcEEEEEE
Q 024008 178 IFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLM 213 (274)
Q Consensus 178 v~~~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~ 213 (274)
|+..-. . ...+..+.++++++|.++...
T Consensus 258 vld~~g----~----~~~~~~~~~~l~~~G~~v~~g 285 (365)
T cd08278 258 ALDTTG----V----PAVIEQAVDALAPRGTLALVG 285 (365)
T ss_pred EEECCC----C----cHHHHHHHHHhccCCEEEEeC
Confidence 984311 0 124577888899999988754
No 414
>PRK07984 enoyl-(acyl carrier protein) reductase; Provisional
Probab=78.35 E-value=38 Score=28.21 Aligned_cols=74 Identities=20% Similarity=0.060 Sum_probs=44.7
Q ss_pred CCCeEEEEcCCcc-h----hHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCC-----------C
Q 024008 108 PKGRALVPGCGTG-Y----DVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC-----------P 171 (274)
Q Consensus 108 ~~~~vLDiG~G~G-~----~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-----------~ 171 (274)
.++.+|=.|++.| . .+..+++.|++|+.++.+....+.+.+..... ..+.++.+|+.+.. .
T Consensus 5 ~~k~~lITGas~~~GIG~aia~~la~~G~~vil~~r~~~~~~~~~~~~~~~---~~~~~~~~Dl~~~~~v~~~~~~~~~~ 81 (262)
T PRK07984 5 SGKRILVTGVASKLSIAYGIAQAMHREGAELAFTYQNDKLKGRVEEFAAQL---GSDIVLPCDVAEDASIDAMFAELGKV 81 (262)
T ss_pred CCCEEEEeCCCCCccHHHHHHHHHHHCCCEEEEEecchhHHHHHHHHHhcc---CCceEeecCCCCHHHHHHHHHHHHhh
Confidence 3567888888652 3 34566668999998887643223333332222 23567788887621 1
Q ss_pred CCCeeEEEecccc
Q 024008 172 TELFDLIFDYTFF 184 (274)
Q Consensus 172 ~~~fD~v~~~~~~ 184 (274)
.+++|+++.+..+
T Consensus 82 ~g~iD~linnAg~ 94 (262)
T PRK07984 82 WPKFDGFVHSIGF 94 (262)
T ss_pred cCCCCEEEECCcc
Confidence 2468999987643
No 415
>PRK07985 oxidoreductase; Provisional
Probab=78.18 E-value=41 Score=28.52 Aligned_cols=105 Identities=16% Similarity=0.089 Sum_probs=59.1
Q ss_pred CCCCeEEEEcCCcch---hHHHhhCCCCeEEEEeCC--hHHHHHHHHHhhcCCCCcceEEEEcccCCCC-----------
Q 024008 107 LPKGRALVPGCGTGY---DVVAMASPERYVVGLEIS--DIAIKKAEELSSSLPNAKFVSFLKADFFTWC----------- 170 (274)
Q Consensus 107 ~~~~~vLDiG~G~G~---~~~~l~~~~~~v~~iD~s--~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~----------- 170 (274)
..++++|-.|++.|. .+..|++.|++|+.++.+ .+..+...+.....+ .++.++.+|+.+..
T Consensus 47 ~~~k~vlITGas~gIG~aia~~L~~~G~~Vi~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~ 124 (294)
T PRK07985 47 LKDRKALVTGGDSGIGRAAAIAYAREGADVAISYLPVEEEDAQDVKKIIEECG--RKAVLLPGDLSDEKFARSLVHEAHK 124 (294)
T ss_pred cCCCEEEEECCCCcHHHHHHHHHHHCCCEEEEecCCcchhhHHHHHHHHHHcC--CeEEEEEccCCCHHHHHHHHHHHHH
Confidence 345789999875442 234555589999887654 233344433333332 35778888987621
Q ss_pred CCCCeeEEEeccccc-------ccChhHH-----------HHHHHHHHhcccCCcEEEEEE
Q 024008 171 PTELFDLIFDYTFFC-------AIEPEMR-----------AAWAQKIKDFLKPDGELITLM 213 (274)
Q Consensus 171 ~~~~fD~v~~~~~~~-------~~~~~~~-----------~~~l~~l~~~L~~gG~l~~~~ 213 (274)
.-++.|+++.+.... ..+.++. -.+++.+...++.+|.++...
T Consensus 125 ~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~g~iv~iS 185 (294)
T PRK07985 125 ALGGLDIMALVAGKQVAIPDIADLTSEQFQKTFAINVFALFWLTQEAIPLLPKGASIITTS 185 (294)
T ss_pred HhCCCCEEEECCCCCcCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhhhcCCEEEEEC
Confidence 124678888764321 1222222 134455666666778766543
No 416
>KOG1208 consensus Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) [Secondary metabolites biosynthesis, transport and catabolism]
Probab=78.04 E-value=31 Score=29.91 Aligned_cols=79 Identities=16% Similarity=0.099 Sum_probs=57.6
Q ss_pred CCCCeEEEEcCCcchh---HHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCC-----------CCC
Q 024008 107 LPKGRALVPGCGTGYD---VVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW-----------CPT 172 (274)
Q Consensus 107 ~~~~~vLDiG~G~G~~---~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-----------~~~ 172 (274)
..+..++-.|+.+|.- +..|+..|++|+..--+.+..+.+++.+.......++.++++|+..+ ...
T Consensus 33 ~~~~~~vVTGansGIG~eta~~La~~Ga~Vv~~~R~~~~~~~~~~~i~~~~~~~~i~~~~lDLssl~SV~~fa~~~~~~~ 112 (314)
T KOG1208|consen 33 LSGKVALVTGATSGIGFETARELALRGAHVVLACRNEERGEEAKEQIQKGKANQKIRVIQLDLSSLKSVRKFAEEFKKKE 112 (314)
T ss_pred CCCcEEEEECCCCchHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCHHHHHHHHHHHHhcC
Confidence 4456788888777643 45667799999999999888888888777644446788999999862 124
Q ss_pred CCeeEEEeccccc
Q 024008 173 ELFDLIFDYTFFC 185 (274)
Q Consensus 173 ~~fD~v~~~~~~~ 185 (274)
.+.|+.+.+.-+.
T Consensus 113 ~~ldvLInNAGV~ 125 (314)
T KOG1208|consen 113 GPLDVLINNAGVM 125 (314)
T ss_pred CCccEEEeCcccc
Confidence 5788888875443
No 417
>PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional
Probab=77.85 E-value=38 Score=27.85 Aligned_cols=73 Identities=16% Similarity=0.134 Sum_probs=44.9
Q ss_pred CCCeEEEEcCCcch---hHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCC-----------CCC
Q 024008 108 PKGRALVPGCGTGY---DVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC-----------PTE 173 (274)
Q Consensus 108 ~~~~vLDiG~G~G~---~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-----------~~~ 173 (274)
.++++|=.|++.|. .+..|++.|++|+.++.++.. ..........+ .++.++.+|+.+.. ..+
T Consensus 7 ~~k~vlVtGas~gIG~~la~~l~~~G~~v~~~~r~~~~-~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 83 (260)
T PRK12823 7 AGKVVVVTGAAQGIGRGVALRAAAEGARVVLVDRSELV-HEVAAELRAAG--GEALALTADLETYAGAQAAMAAAVEAFG 83 (260)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCchHH-HHHHHHHHhcC--CeEEEEEEeCCCHHHHHHHHHHHHHHcC
Confidence 45678888876542 234455689999999987643 22333332222 35778888887621 124
Q ss_pred CeeEEEeccc
Q 024008 174 LFDLIFDYTF 183 (274)
Q Consensus 174 ~fD~v~~~~~ 183 (274)
.+|+++.+..
T Consensus 84 ~id~lv~nAg 93 (260)
T PRK12823 84 RIDVLINNVG 93 (260)
T ss_pred CCeEEEECCc
Confidence 6899887653
No 418
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=77.76 E-value=29 Score=29.55 Aligned_cols=97 Identities=12% Similarity=0.061 Sum_probs=58.4
Q ss_pred CeEEEEcCCc--chhHHHhhCCCCeEEEEeCChHHHHHHHHHhhc-------CCCC---------cceEEEEcccCCCCC
Q 024008 110 GRALVPGCGT--GYDVVAMASPERYVVGLEISDIAIKKAEELSSS-------LPNA---------KFVSFLKADFFTWCP 171 (274)
Q Consensus 110 ~~vLDiG~G~--G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~-------~~~~---------~~v~~~~~d~~~~~~ 171 (274)
.+|-=||+|+ +.++..++..|..|+.+|.+++.++.+++++.. .+.. .+++ ...|+ +.
T Consensus 6 ~~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~-~~~~~-~~-- 81 (286)
T PRK07819 6 QRVGVVGAGQMGAGIAEVCARAGVDVLVFETTEELATAGRNRIEKSLERAVSRGKLTERERDAALARLR-FTTDL-GD-- 81 (286)
T ss_pred cEEEEEcccHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHHHHHHHhcccCChhhHHHHHhCeE-eeCCH-HH--
Confidence 4788888884 334455666899999999999999887655322 1110 1121 12333 11
Q ss_pred CCCeeEEEecccccccChhHHHHHHHHHHhcc-cCCcEEEEEE
Q 024008 172 TELFDLIFDYTFFCAIEPEMRAAWAQKIKDFL-KPDGELITLM 213 (274)
Q Consensus 172 ~~~fD~v~~~~~~~~~~~~~~~~~l~~l~~~L-~~gG~l~~~~ 213 (274)
-...|+|+-. +.+.+ +....++..+.+.+ +|+.++....
T Consensus 82 ~~~~d~ViEa-v~E~~--~~K~~l~~~l~~~~~~~~~il~snT 121 (286)
T PRK07819 82 FADRQLVIEA-VVEDE--AVKTEIFAELDKVVTDPDAVLASNT 121 (286)
T ss_pred hCCCCEEEEe-cccCH--HHHHHHHHHHHHhhCCCCcEEEECC
Confidence 2456888743 23322 34467778888888 6777666533
No 419
>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase. (2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.
Probab=77.73 E-value=3.8 Score=35.75 Aligned_cols=96 Identities=23% Similarity=0.238 Sum_probs=54.8
Q ss_pred CCCCeEEEEcCC-cchhHHHhhC-CCC-eEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC----CCCCCCeeEEE
Q 024008 107 LPKGRALVPGCG-TGYDVVAMAS-PER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT----WCPTELFDLIF 179 (274)
Q Consensus 107 ~~~~~vLDiG~G-~G~~~~~l~~-~~~-~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~----~~~~~~fD~v~ 179 (274)
.++.+||=.|+| .|..+..+++ .|. ++++++.+++..+.+++.- ...-+.....++.+ ....+.+|+|+
T Consensus 171 ~~g~~vlI~g~g~vG~~a~q~a~~~G~~~v~~~~~~~~~~~~~~~~g----a~~~i~~~~~~~~~~l~~~~~~~~~d~vi 246 (351)
T cd08233 171 KPGDTALVLGAGPIGLLTILALKAAGASKIIVSEPSEARRELAEELG----ATIVLDPTEVDVVAEVRKLTGGGGVDVSF 246 (351)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhC----CCEEECCCccCHHHHHHHHhCCCCCCEEE
Confidence 345677777653 2333444444 687 8999999988888775531 11111111112111 22234599998
Q ss_pred ecccccccChhHHHHHHHHHHhcccCCcEEEEEEc
Q 024008 180 DYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMF 214 (274)
Q Consensus 180 ~~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~ 214 (274)
..... ...+....++|+++|.++....
T Consensus 247 d~~g~--------~~~~~~~~~~l~~~G~~v~~g~ 273 (351)
T cd08233 247 DCAGV--------QATLDTAIDALRPRGTAVNVAI 273 (351)
T ss_pred ECCCC--------HHHHHHHHHhccCCCEEEEEcc
Confidence 53211 1245778889999999887653
No 420
>PLN02740 Alcohol dehydrogenase-like
Probab=77.72 E-value=8.4 Score=34.17 Aligned_cols=96 Identities=15% Similarity=0.132 Sum_probs=54.1
Q ss_pred CCCCeEEEEcCCc-chhHHHhhC-CCC-eEEEEeCChHHHHHHHHHhhcCCCCcceEEEEc--ccCC---CCCCCCeeEE
Q 024008 107 LPKGRALVPGCGT-GYDVVAMAS-PER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKA--DFFT---WCPTELFDLI 178 (274)
Q Consensus 107 ~~~~~vLDiG~G~-G~~~~~l~~-~~~-~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~--d~~~---~~~~~~fD~v 178 (274)
.++.+||=+|+|. |..+..+++ .|+ +|+++|.+++.++.+++.- ...-++.... ++.+ ....+.+|+|
T Consensus 197 ~~g~~VlV~G~G~vG~~a~q~ak~~G~~~Vi~~~~~~~r~~~a~~~G----a~~~i~~~~~~~~~~~~v~~~~~~g~dvv 272 (381)
T PLN02740 197 QAGSSVAIFGLGAVGLAVAEGARARGASKIIGVDINPEKFEKGKEMG----ITDFINPKDSDKPVHERIREMTGGGVDYS 272 (381)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCCcEEEEcCChHHHHHHHHcC----CcEEEecccccchHHHHHHHHhCCCCCEE
Confidence 4567898888642 233344454 677 6999999999888886532 1111111110 1111 0111268999
Q ss_pred EecccccccChhHHHHHHHHHHhcccCC-cEEEEEEc
Q 024008 179 FDYTFFCAIEPEMRAAWAQKIKDFLKPD-GELITLMF 214 (274)
Q Consensus 179 ~~~~~~~~~~~~~~~~~l~~l~~~L~~g-G~l~~~~~ 214 (274)
+..-. . ...+.....++++| |.+++...
T Consensus 273 id~~G--~------~~~~~~a~~~~~~g~G~~v~~G~ 301 (381)
T PLN02740 273 FECAG--N------VEVLREAFLSTHDGWGLTVLLGI 301 (381)
T ss_pred EECCC--C------hHHHHHHHHhhhcCCCEEEEEcc
Confidence 84322 1 13456677788886 88776553
No 421
>TIGR00692 tdh L-threonine 3-dehydrogenase. E. coli His-90 modulates substrate specificity and is believed part of the active site.
Probab=77.71 E-value=3.9 Score=35.50 Aligned_cols=96 Identities=19% Similarity=0.273 Sum_probs=54.5
Q ss_pred CCCCeEEEEcCC-cchhHHHhhC-CCCe-EEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC----CCCCCCeeEEE
Q 024008 107 LPKGRALVPGCG-TGYDVVAMAS-PERY-VVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT----WCPTELFDLIF 179 (274)
Q Consensus 107 ~~~~~vLDiG~G-~G~~~~~l~~-~~~~-v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~----~~~~~~fD~v~ 179 (274)
.++.+||-.|+| .|..+..+++ .|.+ +++++-++...+.+++.-. ..-+.....++.+ ....+.+|+++
T Consensus 160 ~~g~~vlI~~~g~vg~~a~~la~~~G~~~v~~~~~~~~~~~~~~~~g~----~~~v~~~~~~~~~~l~~~~~~~~~d~vl 235 (340)
T TIGR00692 160 ISGKSVLVTGAGPIGLMAIAVAKASGAYPVIVSDPNEYRLELAKKMGA----TYVVNPFKEDVVKEVADLTDGEGVDVFL 235 (340)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCC----cEEEcccccCHHHHHHHhcCCCCCCEEE
Confidence 345667666654 3445555555 6775 8888888877776655421 1111111112211 22345689998
Q ss_pred ecccccccChhHHHHHHHHHHhcccCCcEEEEEEc
Q 024008 180 DYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMF 214 (274)
Q Consensus 180 ~~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~ 214 (274)
.... . ...+..+.+.|+++|.++....
T Consensus 236 d~~g----~----~~~~~~~~~~l~~~g~~v~~g~ 262 (340)
T TIGR00692 236 EMSG----A----PKALEQGLQAVTPGGRVSLLGL 262 (340)
T ss_pred ECCC----C----HHHHHHHHHhhcCCCEEEEEcc
Confidence 5311 1 1346778899999999877643
No 422
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=77.58 E-value=26 Score=27.01 Aligned_cols=120 Identities=18% Similarity=0.077 Sum_probs=68.9
Q ss_pred CCcchhHHHhhC----CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCC----CCCCeeEEEecccccccC
Q 024008 117 CGTGYDVVAMAS----PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC----PTELFDLIFDYTFFCAIE 188 (274)
Q Consensus 117 ~G~G~~~~~l~~----~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~----~~~~fD~v~~~~~~~~~~ 188 (274)
.|+|..+..+++ .+.+|+++--++..... ..+++++.+|+.+.. .-..+|.|+....-..-
T Consensus 5 GatG~vG~~l~~~L~~~~~~V~~~~R~~~~~~~----------~~~~~~~~~d~~d~~~~~~al~~~d~vi~~~~~~~~- 73 (183)
T PF13460_consen 5 GATGFVGRALAKQLLRRGHEVTALVRSPSKAED----------SPGVEIIQGDLFDPDSVKAALKGADAVIHAAGPPPK- 73 (183)
T ss_dssp TTTSHHHHHHHHHHHHTTSEEEEEESSGGGHHH----------CTTEEEEESCTTCHHHHHHHHTTSSEEEECCHSTTT-
T ss_pred CCCChHHHHHHHHHHHCCCEEEEEecCchhccc----------ccccccceeeehhhhhhhhhhhhcchhhhhhhhhcc-
Confidence 357777665554 78999999988874444 156999999998731 11368999865432211
Q ss_pred hhHHHHHHHHHHhcccCCc--E-EEEEEccCCCCCCCC----------CcccCHHHHHHHHhcCCCcEEEEeecc
Q 024008 189 PEMRAAWAQKIKDFLKPDG--E-LITLMFPISDHVGGP----------PYKVSVSDYEEVLQPMGFQAISIVDNK 250 (274)
Q Consensus 189 ~~~~~~~l~~l~~~L~~gG--~-l~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~Gf~~~~~~~~~ 250 (274)
+ ......+.+.++..| . +++...+........ .+.....+..+.+++.|+..+-+..-.
T Consensus 74 --~-~~~~~~~~~a~~~~~~~~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~ivrp~~ 145 (183)
T PF13460_consen 74 --D-VDAAKNIIEAAKKAGVKRVVYLSSAGVYRDPPGLFSDEDKPIFPEYARDKREAEEALRESGLNWTIVRPGW 145 (183)
T ss_dssp --H-HHHHHHHHHHHHHTTSSEEEEEEETTGTTTCTSEEEGGTCGGGHHHHHHHHHHHHHHHHSTSEEEEEEESE
T ss_pred --c-ccccccccccccccccccceeeeccccCCCCCcccccccccchhhhHHHHHHHHHHHHhcCCCEEEEECcE
Confidence 1 233344444443333 2 444444433322221 112245566777888888766666533
No 423
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=77.29 E-value=47 Score=29.77 Aligned_cols=39 Identities=18% Similarity=0.285 Sum_probs=25.8
Q ss_pred eEEEEcCC-cchhHHHhhCCCCeEEEEeCChHHHHHHHHH
Q 024008 111 RALVPGCG-TGYDVVAMASPERYVVGLEISDIAIKKAEEL 149 (274)
Q Consensus 111 ~vLDiG~G-~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~ 149 (274)
+|-=+|.| -|..+..+...|+.|+++|++++.++.+++.
T Consensus 2 kI~VIGlGyvGl~~A~~lA~G~~VigvD~d~~kv~~l~~g 41 (388)
T PRK15057 2 KITISGTGYVGLSNGLLIAQNHEVVALDILPSRVAMLNDR 41 (388)
T ss_pred EEEEECCCHHHHHHHHHHHhCCcEEEEECCHHHHHHHHcC
Confidence 35556666 3322222222588999999999999888763
No 424
>COG5379 BtaA S-adenosylmethionine:diacylglycerol 3-amino-3-carboxypropyl transferase [Lipid metabolism]
Probab=76.30 E-value=7.8 Score=33.04 Aligned_cols=45 Identities=9% Similarity=-0.007 Sum_probs=36.6
Q ss_pred CCCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhh
Q 024008 107 LPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSS 151 (274)
Q Consensus 107 ~~~~~vLDiG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~ 151 (274)
..+.+|+-+|+|--..+.++++...+|.+||+++..++.-+-++.
T Consensus 62 g~ghrivtigSGGcn~L~ylsr~Pa~id~VDlN~ahiAln~lkla 106 (414)
T COG5379 62 GIGHRIVTIGSGGCNMLAYLSRAPARIDVVDLNPAHIALNRLKLA 106 (414)
T ss_pred CCCcEEEEecCCcchHHHHhhcCCceeEEEeCCHHHHHHHHHHHH
Confidence 446799999998666777888888999999999999887665543
No 425
>PRK06172 short chain dehydrogenase; Provisional
Probab=76.26 E-value=15 Score=30.12 Aligned_cols=75 Identities=19% Similarity=0.116 Sum_probs=50.0
Q ss_pred CCCeEEEEcCCcchh---HHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCC-----------CCC
Q 024008 108 PKGRALVPGCGTGYD---VVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC-----------PTE 173 (274)
Q Consensus 108 ~~~~vLDiG~G~G~~---~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-----------~~~ 173 (274)
.++++|-.|++.|.- +..+++.|++|+.++-+++.++.........+ .++.++.+|+.+.. ..+
T Consensus 6 ~~k~ilItGas~~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~i~~~~~~~~~~~g 83 (253)
T PRK06172 6 SGKVALVTGGAAGIGRATALAFAREGAKVVVADRDAAGGEETVALIREAG--GEALFVACDVTRDAEVKALVEQTIAAYG 83 (253)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcC--CceEEEEcCCCCHHHHHHHHHHHHHHhC
Confidence 457888888755422 23445588999999998877766655554433 46888999997621 014
Q ss_pred CeeEEEecccc
Q 024008 174 LFDLIFDYTFF 184 (274)
Q Consensus 174 ~fD~v~~~~~~ 184 (274)
++|+++.+...
T Consensus 84 ~id~li~~ag~ 94 (253)
T PRK06172 84 RLDYAFNNAGI 94 (253)
T ss_pred CCCEEEECCCC
Confidence 67999977543
No 426
>PRK08085 gluconate 5-dehydrogenase; Provisional
Probab=75.97 E-value=42 Score=27.47 Aligned_cols=75 Identities=11% Similarity=-0.000 Sum_probs=48.6
Q ss_pred CCCCeEEEEcCCcchh---HHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCC-----------CC
Q 024008 107 LPKGRALVPGCGTGYD---VVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC-----------PT 172 (274)
Q Consensus 107 ~~~~~vLDiG~G~G~~---~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-----------~~ 172 (274)
..++++|=.|++.|.- +..|++.|++++.++.++..+..........+ .++.++.+|+.+.. ..
T Consensus 7 l~~k~~lItGas~giG~~ia~~L~~~G~~vvl~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 84 (254)
T PRK08085 7 LAGKNILITGSAQGIGFLLATGLAEYGAEIIINDITAERAELAVAKLRQEG--IKAHAAPFNVTHKQEVEAAIEHIEKDI 84 (254)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHHHhcC--CeEEEEecCCCCHHHHHHHHHHHHHhc
Confidence 3456788888655422 33445589999999998776666555444332 35777888887621 12
Q ss_pred CCeeEEEeccc
Q 024008 173 ELFDLIFDYTF 183 (274)
Q Consensus 173 ~~fD~v~~~~~ 183 (274)
+++|+++.+..
T Consensus 85 ~~id~vi~~ag 95 (254)
T PRK08085 85 GPIDVLINNAG 95 (254)
T ss_pred CCCCEEEECCC
Confidence 46899998764
No 427
>KOG1197 consensus Predicted quinone oxidoreductase [Energy production and conversion; General function prediction only]
Probab=75.84 E-value=14 Score=30.94 Aligned_cols=95 Identities=16% Similarity=0.151 Sum_probs=64.9
Q ss_pred CCCCeEEE--EcCCcchhHHHhhC-CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC----CCCCCCeeEEE
Q 024008 107 LPKGRALV--PGCGTGYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT----WCPTELFDLIF 179 (274)
Q Consensus 107 ~~~~~vLD--iG~G~G~~~~~l~~-~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~----~~~~~~fD~v~ 179 (274)
.++..||- ...|.|..+.++++ .+.++++.--+.+-.++|+++-... -+.....|+.+ .--....|+++
T Consensus 145 kpGhtVlvhaAAGGVGlll~Ql~ra~~a~tI~~asTaeK~~~akenG~~h----~I~y~~eD~v~~V~kiTngKGVd~vy 220 (336)
T KOG1197|consen 145 KPGHTVLVHAAAGGVGLLLCQLLRAVGAHTIATASTAEKHEIAKENGAEH----PIDYSTEDYVDEVKKITNGKGVDAVY 220 (336)
T ss_pred CCCCEEEEEeccccHHHHHHHHHHhcCcEEEEEeccHHHHHHHHhcCCcc----eeeccchhHHHHHHhccCCCCceeee
Confidence 45566553 45677778878877 7889999888888888888775443 26666667655 22245789888
Q ss_pred ecccccccChhHHHHHHHHHHhcccCCcEEEEEEc
Q 024008 180 DYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMF 214 (274)
Q Consensus 180 ~~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~ 214 (274)
.+-- .+-+..-..+||++|.++....
T Consensus 221 DsvG---------~dt~~~sl~~Lk~~G~mVSfG~ 246 (336)
T KOG1197|consen 221 DSVG---------KDTFAKSLAALKPMGKMVSFGN 246 (336)
T ss_pred cccc---------chhhHHHHHHhccCceEEEecc
Confidence 4321 1234667789999999987554
No 428
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=75.65 E-value=16 Score=28.73 Aligned_cols=96 Identities=18% Similarity=0.112 Sum_probs=56.2
Q ss_pred EEEEcCCcchh--HHHhhCCCCeEEEEeCChHHHHHHHHHhhc-------CC-CC--------cceEEEEcccCCCCCCC
Q 024008 112 ALVPGCGTGYD--VVAMASPERYVVGLEISDIAIKKAEELSSS-------LP-NA--------KFVSFLKADFFTWCPTE 173 (274)
Q Consensus 112 vLDiG~G~G~~--~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~-------~~-~~--------~~v~~~~~d~~~~~~~~ 173 (274)
|.=+|+|+=+. +..++..|.+|+.+|.+++.++.+++.+.. .+ .+ .++. ...|+....
T Consensus 2 V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~-~~~dl~~~~--- 77 (180)
T PF02737_consen 2 VAVIGAGTMGRGIAALFARAGYEVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARIS-FTTDLEEAV--- 77 (180)
T ss_dssp EEEES-SHHHHHHHHHHHHTTSEEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEE-EESSGGGGC---
T ss_pred EEEEcCCHHHHHHHHHHHhCCCcEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhcc-cccCHHHHh---
Confidence 55677765322 334445899999999999999888776544 11 11 1233 233433222
Q ss_pred CeeEEEecccccccChhHHHHHHHHHHhcccCCcEEEEEEc
Q 024008 174 LFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMF 214 (274)
Q Consensus 174 ~fD~v~~~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~ 214 (274)
..|+|+-.- .+.+ +....++.++.+.+.|+.+|.....
T Consensus 78 ~adlViEai-~E~l--~~K~~~~~~l~~~~~~~~ilasnTS 115 (180)
T PF02737_consen 78 DADLVIEAI-PEDL--ELKQELFAELDEICPPDTILASNTS 115 (180)
T ss_dssp TESEEEE-S--SSH--HHHHHHHHHHHCCS-TTSEEEE--S
T ss_pred hhheehhhc-cccH--HHHHHHHHHHHHHhCCCceEEecCC
Confidence 578887432 2222 4557899999999999998877553
No 429
>PF02086 MethyltransfD12: D12 class N6 adenine-specific DNA methyltransferase; InterPro: IPR012327 In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. There are 2 major classes of DNA methyltransferase that differ in the nature of the modifications they effect. The members of one class (C-MTases) methylate a ring carbon and form C5-methylcytosine (see IPR001525 from INTERPRO). Members of the second class (N-MTases) methylate exocyclic nitrogens and form either N4-methylcytosine (N4-MTases) or N6-methyladenine (N6-MTases). Both classes of MTase utilise the cofactor S-adenosyl-L-methionine (SAM) as the methyl donor and are active as monomeric enzymes []. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence. It has been shown [, , , ] that A-Mtases contain a conserved motif Asp/Asn-Pro-Pro-Tyr/Phe in their N-terminal section, this conserved region could be involved in substrate binding or in the catalytic activity. The structure of N6-MTase TaqI (M.TaqI) has been resolved to 2.4 A []. The molecule folds into 2 domains, an N-terminal catalytic domain, which contains the catalytic and cofactor binding sites, and comprises a central 9-stranded beta-sheet, surrounded by 5 helices; and a C-terminal DNA recognition domain, which is formed by 4 small beta-sheets and 8 alpha-helices. The N- and C-terminal domains form a cleft that accommodates the DNA substrate. A classification of N-MTases has been proposed, based on conserved motif (CM) arrangements []. According to this classification, N6-MTases that have a DPPY motif (CM II) occuring after the FxGxG motif (CM I) are designated D12 class N6-adenine MTases.; GO: 0009007 site-specific DNA-methyltransferase (adenine-specific) activity, 0032775 DNA methylation on adenine; PDB: 1Q0T_B 1YFJ_B 1Q0S_A 1YFL_B 1YF3_B 2DPM_A 2ORE_F 2G1P_B.
Probab=75.64 E-value=7.8 Score=32.16 Aligned_cols=44 Identities=16% Similarity=0.141 Sum_probs=33.0
Q ss_pred CCCeEEEEcCCcchhHHHhhCCCCeEEEEeCChHHHHHHHHHhh
Q 024008 108 PKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSS 151 (274)
Q Consensus 108 ~~~~vLDiG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~ 151 (274)
...+++|+-||+|..+..+...+..++.-|+++..+...+..+.
T Consensus 20 ~~~~~vepF~G~g~V~~~~~~~~~~vi~ND~~~~l~~~~~~~l~ 63 (260)
T PF02086_consen 20 KHKTYVEPFAGGGSVFLNLKQPGKRVIINDINPDLINFWKAVLK 63 (260)
T ss_dssp S-SEEEETT-TTSHHHHCC---SSEEEEEES-HHHHHHHHHHHH
T ss_pred CCCEEEEEecchhHHHHHhcccccceeeeechHHHHHHHHHHHh
Confidence 56899999999999999988888899999999988888774443
No 430
>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=75.57 E-value=20 Score=32.05 Aligned_cols=120 Identities=17% Similarity=0.058 Sum_probs=59.8
Q ss_pred CeEEEEcCCcchh--HHHhhCCCCeEEEEeCChHHHHHHHHHhh---cCCCCcce-EEEEcc-cCCC-CC--CCCeeEEE
Q 024008 110 GRALVPGCGTGYD--VVAMASPERYVVGLEISDIAIKKAEELSS---SLPNAKFV-SFLKAD-FFTW-CP--TELFDLIF 179 (274)
Q Consensus 110 ~~vLDiG~G~G~~--~~~l~~~~~~v~~iD~s~~~~~~a~~~~~---~~~~~~~v-~~~~~d-~~~~-~~--~~~fD~v~ 179 (274)
.+|--+|=|-=++ +..+++.|++|+|+|+++..++....-.. +..+...+ ..+... +... .+ -...|+++
T Consensus 10 ~~I~ViGLGYVGLPlA~~fA~~G~~ViG~DIn~~~Vd~ln~G~~~i~e~~~~~~v~~~v~~g~lraTtd~~~l~~~dv~i 89 (436)
T COG0677 10 ATIGVIGLGYVGLPLAAAFASAGFKVIGVDINQKKVDKLNRGESYIEEPDLDEVVKEAVESGKLRATTDPEELKECDVFI 89 (436)
T ss_pred eEEEEEccccccHHHHHHHHHcCCceEeEeCCHHHHHHHhCCcceeecCcHHHHHHHHHhcCCceEecChhhcccCCEEE
Confidence 5666665543222 34455689999999999988877643210 00000000 000000 1100 00 11345444
Q ss_pred -eccc-ccc---cChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhc
Q 024008 180 -DYTF-FCA---IEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQP 238 (274)
Q Consensus 180 -~~~~-~~~---~~~~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (274)
|..+ +.. .+-....+..+.+...|++|-.+++..-.. .-+.+++...+.+
T Consensus 90 I~VPTPl~~~~~pDls~v~~aa~sIa~~L~kG~LVIlEST~~---------PGTTe~v~~plle 144 (436)
T COG0677 90 ICVPTPLKKYREPDLSYVESAARSIAPVLKKGDLVILESTTP---------PGTTEEVVKPLLE 144 (436)
T ss_pred EEecCCcCCCCCCChHHHHHHHHHHHHhcCCCCEEEEecCCC---------CCcHHHHHHHHHh
Confidence 3222 111 112345778899999999988877754222 1255565555555
No 431
>PRK06125 short chain dehydrogenase; Provisional
Probab=75.48 E-value=38 Score=27.88 Aligned_cols=75 Identities=13% Similarity=0.038 Sum_probs=48.5
Q ss_pred CCCeEEEEcCCcchh---HHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCC-------CCCCeeE
Q 024008 108 PKGRALVPGCGTGYD---VVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC-------PTELFDL 177 (274)
Q Consensus 108 ~~~~vLDiG~G~G~~---~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-------~~~~fD~ 177 (274)
.++++|=.|++.|.- +..+++.|++|++++.+++..+.+...+.... ..++.++..|+.+.. ..++.|+
T Consensus 6 ~~k~vlItG~~~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~~D~~~~~~~~~~~~~~g~id~ 84 (259)
T PRK06125 6 AGKRVLITGASKGIGAAAAEAFAAEGCHLHLVARDADALEALAADLRAAH-GVDVAVHALDLSSPEAREQLAAEAGDIDI 84 (259)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhc-CCceEEEEecCCCHHHHHHHHHHhCCCCE
Confidence 457888888754422 23455589999999998877766555443321 135778888887521 1256899
Q ss_pred EEeccc
Q 024008 178 IFDYTF 183 (274)
Q Consensus 178 v~~~~~ 183 (274)
++.+..
T Consensus 85 lv~~ag 90 (259)
T PRK06125 85 LVNNAG 90 (259)
T ss_pred EEECCC
Confidence 887643
No 432
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=75.40 E-value=26 Score=32.28 Aligned_cols=119 Identities=7% Similarity=-0.117 Sum_probs=66.3
Q ss_pred eEEEEcCCcc--hhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCC-CCCeeEEEeccccccc
Q 024008 111 RALVPGCGTG--YDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP-TELFDLIFDYTFFCAI 187 (274)
Q Consensus 111 ~vLDiG~G~G--~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~-~~~fD~v~~~~~~~~~ 187 (274)
+|-=||.|.- .++..|++.|.+|++.|.+++.++...+.....+. ++. ...++.+... -...|+|+.. ..
T Consensus 3 ~IgvIGLG~MG~~lA~nL~~~G~~V~v~dr~~~~~~~l~~~~~~~g~--~i~-~~~s~~e~v~~l~~~d~Iil~----v~ 75 (470)
T PTZ00142 3 DIGLIGLAVMGQNLALNIASRGFKISVYNRTYEKTEEFVKKAKEGNT--RVK-GYHTLEELVNSLKKPRKVILL----IK 75 (470)
T ss_pred EEEEEeEhHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhhhhcCC--cce-ecCCHHHHHhcCCCCCEEEEE----eC
Confidence 3455666643 23445556899999999999988877664332221 111 1222222111 1235766632 22
Q ss_pred ChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcEEE
Q 024008 188 EPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAIS 245 (274)
Q Consensus 188 ~~~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gf~~~~ 245 (274)
+......+++.+...|++|-+++-.. . .+.-+..+..+.+.+.|...++
T Consensus 76 ~~~~v~~vi~~l~~~L~~g~iIID~g--n-------~~~~dt~~r~~~l~~~Gi~fld 124 (470)
T PTZ00142 76 AGEAVDETIDNLLPLLEKGDIIIDGG--N-------EWYLNTERRIKRCEEKGILYLG 124 (470)
T ss_pred ChHHHHHHHHHHHhhCCCCCEEEECC--C-------CCHHHHHHHHHHHHHcCCeEEc
Confidence 33566778888999998886653322 1 1122445556677777766544
No 433
>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase. The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.
Probab=75.35 E-value=4.4 Score=35.76 Aligned_cols=96 Identities=16% Similarity=0.139 Sum_probs=55.5
Q ss_pred CCCCeEEEEcCCc-chhHHHhhC-CCC-eEEEEeCChHHHHHHHHHhhcCCCCcceEEEE--cccCC---CCCCCCeeEE
Q 024008 107 LPKGRALVPGCGT-GYDVVAMAS-PER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLK--ADFFT---WCPTELFDLI 178 (274)
Q Consensus 107 ~~~~~vLDiG~G~-G~~~~~l~~-~~~-~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~--~d~~~---~~~~~~fD~v 178 (274)
.++.+||=.|+|. |..+..+++ .|+ +|+++|.+++..+.+++.-.. .-+.... .++.+ ....+.+|+|
T Consensus 184 ~~g~~VlV~G~G~iG~~a~q~Ak~~G~~~Vi~~~~~~~~~~~a~~~Ga~----~~i~~~~~~~~~~~~v~~~~~~g~d~v 259 (368)
T TIGR02818 184 EEGDTVAVFGLGGIGLSVIQGARMAKASRIIAIDINPAKFELAKKLGAT----DCVNPNDYDKPIQEVIVEITDGGVDYS 259 (368)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhCCC----eEEcccccchhHHHHHHHHhCCCCCEE
Confidence 4567888888753 344455555 677 799999999988888664211 1111111 11111 0111368988
Q ss_pred EecccccccChhHHHHHHHHHHhcccCC-cEEEEEEc
Q 024008 179 FDYTFFCAIEPEMRAAWAQKIKDFLKPD-GELITLMF 214 (274)
Q Consensus 179 ~~~~~~~~~~~~~~~~~l~~l~~~L~~g-G~l~~~~~ 214 (274)
+..-. . ...+....++++++ |.+++...
T Consensus 260 id~~G--~------~~~~~~~~~~~~~~~G~~v~~g~ 288 (368)
T TIGR02818 260 FECIG--N------VNVMRAALECCHKGWGESIIIGV 288 (368)
T ss_pred EECCC--C------HHHHHHHHHHhhcCCCeEEEEec
Confidence 84311 0 23456777888886 98877654
No 434
>PRK09291 short chain dehydrogenase; Provisional
Probab=75.19 E-value=19 Score=29.49 Aligned_cols=71 Identities=13% Similarity=0.033 Sum_probs=46.3
Q ss_pred CeEEEEcCCcchhHH----HhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCC-----CCCCeeEEEe
Q 024008 110 GRALVPGCGTGYDVV----AMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC-----PTELFDLIFD 180 (274)
Q Consensus 110 ~~vLDiG~G~G~~~~----~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~~~~fD~v~~ 180 (274)
.+||-.|++.| .+. .|++.|+++++++-++......+......+ .++.++.+|+.+.. ...+.|+|+.
T Consensus 3 ~~vlVtGasg~-iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~id~vi~ 79 (257)
T PRK09291 3 KTILITGAGSG-FGREVALRLARKGHNVIAGVQIAPQVTALRAEAARRG--LALRVEKLDLTDAIDRAQAAEWDVDVLLN 79 (257)
T ss_pred CEEEEeCCCCH-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CcceEEEeeCCCHHHHHHHhcCCCCEEEE
Confidence 46787777544 333 344589999999988776666555444333 35888889987621 1247899997
Q ss_pred ccc
Q 024008 181 YTF 183 (274)
Q Consensus 181 ~~~ 183 (274)
+..
T Consensus 80 ~ag 82 (257)
T PRK09291 80 NAG 82 (257)
T ss_pred CCC
Confidence 654
No 435
>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional
Probab=75.18 E-value=45 Score=27.43 Aligned_cols=72 Identities=14% Similarity=0.022 Sum_probs=44.1
Q ss_pred CCCeEEEEcCCc-chhH----HHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCC-----------C
Q 024008 108 PKGRALVPGCGT-GYDV----VAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC-----------P 171 (274)
Q Consensus 108 ~~~~vLDiG~G~-G~~~----~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-----------~ 171 (274)
.++++|-.|.++ +..+ ..|++.|++|+.++.+....+.+++.. ..++.++.+|+.+.. .
T Consensus 6 ~~k~~lItGas~~~gIG~a~a~~la~~G~~Vi~~~r~~~~~~~~~~~~-----~~~~~~~~~Dl~~~~~v~~~~~~~~~~ 80 (252)
T PRK06079 6 SGKKIVVMGVANKRSIAWGCAQAIKDQGATVIYTYQNDRMKKSLQKLV-----DEEDLLVECDVASDESIERAFATIKER 80 (252)
T ss_pred CCCEEEEeCCCCCCchHHHHHHHHHHCCCEEEEecCchHHHHHHHhhc-----cCceeEEeCCCCCHHHHHHHHHHHHHH
Confidence 456788888763 3333 455558999998887644333332221 134778889997621 1
Q ss_pred CCCeeEEEecccc
Q 024008 172 TELFDLIFDYTFF 184 (274)
Q Consensus 172 ~~~fD~v~~~~~~ 184 (274)
.+++|+++.+..+
T Consensus 81 ~g~iD~lv~nAg~ 93 (252)
T PRK06079 81 VGKIDGIVHAIAY 93 (252)
T ss_pred hCCCCEEEEcccc
Confidence 2568999887543
No 436
>cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase. L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found
Probab=75.15 E-value=23 Score=31.73 Aligned_cols=97 Identities=19% Similarity=0.272 Sum_probs=56.0
Q ss_pred CCCeEEEEc--CCcchhHHHhhC-CC--C-eEEEEeCChHHHHHHHHHhhcCCC--CcceEEEE----cccCC----CCC
Q 024008 108 PKGRALVPG--CGTGYDVVAMAS-PE--R-YVVGLEISDIAIKKAEELSSSLPN--AKFVSFLK----ADFFT----WCP 171 (274)
Q Consensus 108 ~~~~vLDiG--~G~G~~~~~l~~-~~--~-~v~~iD~s~~~~~~a~~~~~~~~~--~~~v~~~~----~d~~~----~~~ 171 (274)
++.+||=+| .+.|..+..+++ .| + +|+++|.+++.++.+++....... .....++. .++.+ ...
T Consensus 175 ~g~~VlV~G~~G~vG~~aiq~ak~~G~g~~~Vi~~~~~~~r~~~a~~~~~~~~~~~Ga~~~~i~~~~~~~~~~~v~~~t~ 254 (410)
T cd08238 175 PGGNTAILGGAGPMGLMAIDYAIHGPIGPSLLVVTDVNDERLARAQRLFPPEAASRGIELLYVNPATIDDLHATLMELTG 254 (410)
T ss_pred CCCEEEEEeCCCHHHHHHHHHHHhcccCCceEEEEcCCHHHHHHHHHhccccccccCceEEEECCCccccHHHHHHHHhC
Confidence 456888886 346777777777 33 3 799999999999999875321100 00111121 11111 122
Q ss_pred CCCeeEEEecccccccChhHHHHHHHHHHhcccCCcEEEEE
Q 024008 172 TELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITL 212 (274)
Q Consensus 172 ~~~fD~v~~~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~ 212 (274)
...+|+|+.... . ...+....++++++|.+++.
T Consensus 255 g~g~D~vid~~g----~----~~~~~~a~~~l~~~G~~v~~ 287 (410)
T cd08238 255 GQGFDDVFVFVP----V----PELVEEADTLLAPDGCLNFF 287 (410)
T ss_pred CCCCCEEEEcCC----C----HHHHHHHHHHhccCCeEEEE
Confidence 346898884211 0 23457788899988876554
No 437
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=75.07 E-value=14 Score=28.17 Aligned_cols=95 Identities=15% Similarity=0.119 Sum_probs=57.9
Q ss_pred eEEEEcCCcchhHH--HhhCCCCeEEEEeCChHHHHHHHHHhhcCCC------CcceEEEEcccCCCCCCCCeeEEEecc
Q 024008 111 RALVPGCGTGYDVV--AMASPERYVVGLEISDIAIKKAEELSSSLPN------AKFVSFLKADFFTWCPTELFDLIFDYT 182 (274)
Q Consensus 111 ~vLDiG~G~G~~~~--~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~------~~~v~~~~~d~~~~~~~~~fD~v~~~~ 182 (274)
+|.=+|+|.+..+. .++..|.+|+....+++.++..++....... ..++. ...|+.+.. ...|+|+..
T Consensus 1 KI~ViGaG~~G~AlA~~la~~g~~V~l~~~~~~~~~~i~~~~~n~~~~~~~~l~~~i~-~t~dl~~a~--~~ad~Iiia- 76 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADNGHEVTLWGRDEEQIEEINETRQNPKYLPGIKLPENIK-ATTDLEEAL--EDADIIIIA- 76 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHCTEEEEEETSCHHHHHHHHHHTSETTTSTTSBEETTEE-EESSHHHHH--TT-SEEEE--
T ss_pred CEEEECcCHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHhCCCCCCCCCcccCcccc-cccCHHHHh--CcccEEEec-
Confidence 35668888877654 3445888999999999888887776542211 12232 234443322 345877743
Q ss_pred cccccChhHHHHHHHHHHhcccCCcEEEEEE
Q 024008 183 FFCAIEPEMRAAWAQKIKDFLKPDGELITLM 213 (274)
Q Consensus 183 ~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~ 213 (274)
++....+.+++++...++++-.+++..
T Consensus 77 ----vPs~~~~~~~~~l~~~l~~~~~ii~~~ 103 (157)
T PF01210_consen 77 ----VPSQAHREVLEQLAPYLKKGQIIISAT 103 (157)
T ss_dssp ----S-GGGHHHHHHHHTTTSHTT-EEEETS
T ss_pred ----ccHHHHHHHHHHHhhccCCCCEEEEec
Confidence 222344678899999998777776643
No 438
>cd08279 Zn_ADH_class_III Class III alcohol dehydrogenase. Glutathione-dependent formaldehyde dehydrogenases (FDHs, Class III ADH) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also known as glutathione-dependent formaldehyde dehydrogenase (FDH), which convert aldehydes to corresponding carboxylic acid and alcohol. ADH is a me
Probab=74.89 E-value=5.5 Score=34.96 Aligned_cols=91 Identities=16% Similarity=0.221 Sum_probs=54.1
Q ss_pred CCCeEEEEcCC-cchhHHHhhC-CCCe-EEEEeCChHHHHHHHHHhhcCCCCcceEEEEc---ccC----CCCCCCCeeE
Q 024008 108 PKGRALVPGCG-TGYDVVAMAS-PERY-VVGLEISDIAIKKAEELSSSLPNAKFVSFLKA---DFF----TWCPTELFDL 177 (274)
Q Consensus 108 ~~~~vLDiG~G-~G~~~~~l~~-~~~~-v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~---d~~----~~~~~~~fD~ 177 (274)
++.+||-.|+| .|..+..+++ .|.+ +++++-++...+.+++.- . ..++.. +.. ...+...+|+
T Consensus 182 ~g~~vLI~g~g~vG~a~i~lak~~G~~~Vi~~~~~~~~~~~~~~~g----~---~~vv~~~~~~~~~~l~~~~~~~~vd~ 254 (363)
T cd08279 182 PGDTVAVIGCGGVGLNAIQGARIAGASRIIAVDPVPEKLELARRFG----A---THTVNASEDDAVEAVRDLTDGRGADY 254 (363)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHHHhC----C---eEEeCCCCccHHHHHHHHcCCCCCCE
Confidence 45678777764 3555555555 6775 999998888777764321 1 111111 111 1223456898
Q ss_pred EEecccccccChhHHHHHHHHHHhcccCCcEEEEEE
Q 024008 178 IFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLM 213 (274)
Q Consensus 178 v~~~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~ 213 (274)
++.... . ...+....++|+++|.++...
T Consensus 255 vld~~~-----~---~~~~~~~~~~l~~~G~~v~~g 282 (363)
T cd08279 255 AFEAVG-----R---AATIRQALAMTRKGGTAVVVG 282 (363)
T ss_pred EEEcCC-----C---hHHHHHHHHHhhcCCeEEEEe
Confidence 874211 0 134577888999999988764
No 439
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=74.30 E-value=21 Score=30.43 Aligned_cols=120 Identities=13% Similarity=0.045 Sum_probs=61.1
Q ss_pred CCCCeEEEEcCCcchhHHH----hhCCCCe-EEEEeCCh---HHHHHHHHHhhcCCCCcceEEEEcccCCCC----CCCC
Q 024008 107 LPKGRALVPGCGTGYDVVA----MASPERY-VVGLEISD---IAIKKAEELSSSLPNAKFVSFLKADFFTWC----PTEL 174 (274)
Q Consensus 107 ~~~~~vLDiG~G~G~~~~~----l~~~~~~-v~~iD~s~---~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~----~~~~ 174 (274)
..+.++|=+|+| | .+.. ++..|++ |+.++.++ +..+...+.+...+ ..+.+...|+.+.. .-..
T Consensus 124 ~~~k~vlI~GAG-G-agrAia~~La~~G~~~V~I~~R~~~~~~~a~~l~~~l~~~~--~~~~~~~~d~~~~~~~~~~~~~ 199 (289)
T PRK12548 124 VKGKKLTVIGAG-G-AATAIQVQCALDGAKEITIFNIKDDFYERAEQTAEKIKQEV--PECIVNVYDLNDTEKLKAEIAS 199 (289)
T ss_pred cCCCEEEEECCc-H-HHHHHHHHHHHCCCCEEEEEeCCchHHHHHHHHHHHHhhcC--CCceeEEechhhhhHHHhhhcc
Confidence 345789999886 4 3333 3347774 99999886 33333322222211 22344445554311 1135
Q ss_pred eeEEEecccccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcE
Q 024008 175 FDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQA 243 (274)
Q Consensus 175 fD~v~~~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gf~~ 243 (274)
+|+|+..-.+...+.... ..+. -...|.++..++=..+.+ ....+.+.+++.|+..
T Consensus 200 ~DilINaTp~Gm~~~~~~-~~~~-~~~~l~~~~~v~D~vY~P-----------~~T~ll~~A~~~G~~~ 255 (289)
T PRK12548 200 SDILVNATLVGMKPNDGE-TNIK-DTSVFRKDLVVADTVYNP-----------KKTKLLEDAEAAGCKT 255 (289)
T ss_pred CCEEEEeCCCCCCCCCCC-CCCC-cHHhcCCCCEEEEecCCC-----------CCCHHHHHHHHCCCee
Confidence 799997766654321110 0000 013456666544333332 2346777888888765
No 440
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=74.25 E-value=18 Score=29.72 Aligned_cols=75 Identities=19% Similarity=0.041 Sum_probs=49.5
Q ss_pred CCCCeEEEEcCCcchhHHH----hhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCC-----------C
Q 024008 107 LPKGRALVPGCGTGYDVVA----MASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC-----------P 171 (274)
Q Consensus 107 ~~~~~vLDiG~G~G~~~~~----l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-----------~ 171 (274)
..+++||=.|+ +|..+.. +++.|++|++++.++..+......+...+ .++.++.+|+.+.. .
T Consensus 8 ~~~k~vlItGa-~g~iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~i~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~ 84 (255)
T PRK07523 8 LTGRRALVTGS-SQGIGYALAEGLAQAGAEVILNGRDPAKLAAAAESLKGQG--LSAHALAFDVTDHDAVRAAIDAFEAE 84 (255)
T ss_pred CCCCEEEEECC-cchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcC--ceEEEEEccCCCHHHHHHHHHHHHHh
Confidence 45678888886 4444444 44489999999998877766555554432 35788888987621 1
Q ss_pred CCCeeEEEecccc
Q 024008 172 TELFDLIFDYTFF 184 (274)
Q Consensus 172 ~~~fD~v~~~~~~ 184 (274)
.++.|.++.+...
T Consensus 85 ~~~~d~li~~ag~ 97 (255)
T PRK07523 85 IGPIDILVNNAGM 97 (255)
T ss_pred cCCCCEEEECCCC
Confidence 1457888877543
No 441
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=74.25 E-value=21 Score=30.29 Aligned_cols=95 Identities=15% Similarity=0.084 Sum_probs=54.4
Q ss_pred eEEEEcCCc--chhHHHhhCCCCeEEEEeCChHHHHHHHHHhhc-------CC-CC--------cceEEEEcccCCCCCC
Q 024008 111 RALVPGCGT--GYDVVAMASPERYVVGLEISDIAIKKAEELSSS-------LP-NA--------KFVSFLKADFFTWCPT 172 (274)
Q Consensus 111 ~vLDiG~G~--G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~-------~~-~~--------~~v~~~~~d~~~~~~~ 172 (274)
+|.=||+|. +..+..+++.|.+|+.+|.+++.++.+.+.... .+ .. .++++ ..|..+. -
T Consensus 3 ~V~VIG~G~mG~~iA~~la~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~-~~~~~~~--~ 79 (288)
T PRK09260 3 KLVVVGAGVMGRGIAYVFAVSGFQTTLVDIKQEQLESAQQEIASIFEQGVARGKLTEAARQAALARLSY-SLDLKAA--V 79 (288)
T ss_pred EEEEECccHHHHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEE-eCcHHHh--h
Confidence 577788864 223445556889999999999999887654321 00 00 01221 1222211 1
Q ss_pred CCeeEEEecccccccChhHHHHHHHHHHhcccCCcEEEE
Q 024008 173 ELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELIT 211 (274)
Q Consensus 173 ~~fD~v~~~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~ 211 (274)
...|+|+..-. . +......++.++.+.++++.++.+
T Consensus 80 ~~aD~Vi~avp-e--~~~~k~~~~~~l~~~~~~~~il~~ 115 (288)
T PRK09260 80 ADADLVIEAVP-E--KLELKKAVFETADAHAPAECYIAT 115 (288)
T ss_pred cCCCEEEEecc-C--CHHHHHHHHHHHHhhCCCCcEEEE
Confidence 34688884322 1 112345677888888888776554
No 442
>CHL00194 ycf39 Ycf39; Provisional
Probab=74.25 E-value=32 Score=29.56 Aligned_cols=129 Identities=13% Similarity=-0.093 Sum_probs=64.8
Q ss_pred eEEEEcCCcchhHHHhhC----CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCC----CCCCeeEEEecc
Q 024008 111 RALVPGCGTGYDVVAMAS----PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC----PTELFDLIFDYT 182 (274)
Q Consensus 111 ~vLDiG~G~G~~~~~l~~----~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~----~~~~fD~v~~~~ 182 (274)
+||=. .|+|..+..+++ .|.+|+++.-++...... .. ..++++.+|+.+.. .-..+|+|+...
T Consensus 2 kIlVt-GatG~iG~~lv~~Ll~~g~~V~~l~R~~~~~~~l----~~----~~v~~v~~Dl~d~~~l~~al~g~d~Vi~~~ 72 (317)
T CHL00194 2 SLLVI-GATGTLGRQIVRQALDEGYQVRCLVRNLRKASFL----KE----WGAELVYGDLSLPETLPPSFKGVTAIIDAS 72 (317)
T ss_pred EEEEE-CCCcHHHHHHHHHHHHCCCeEEEEEcChHHhhhH----hh----cCCEEEECCCCCHHHHHHHHCCCCEEEECC
Confidence 45544 467777765554 788999998775432111 11 24889999987621 113579888642
Q ss_pred cccccChhHH----HHHHHHHHhcccCCc--EEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcEEEEee
Q 024008 183 FFCAIEPEMR----AAWAQKIKDFLKPDG--ELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAISIVD 248 (274)
Q Consensus 183 ~~~~~~~~~~----~~~l~~l~~~L~~gG--~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gf~~~~~~~ 248 (274)
....-+.... ......+.+.++.-| +++.............++..+..+.++.++..|+..+-+..
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~l~~aa~~~gvkr~I~~Ss~~~~~~~~~~~~~~K~~~e~~l~~~~l~~tilRp 144 (317)
T CHL00194 73 TSRPSDLYNAKQIDWDGKLALIEAAKAAKIKRFIFFSILNAEQYPYIPLMKLKSDIEQKLKKSGIPYTIFRL 144 (317)
T ss_pred CCCCCCccchhhhhHHHHHHHHHHHHHcCCCEEEEeccccccccCCChHHHHHHHHHHHHHHcCCCeEEEee
Confidence 2111110000 111123334333333 34432211111111223344566778888888877655544
No 443
>PRK07035 short chain dehydrogenase; Provisional
Probab=73.85 E-value=19 Score=29.43 Aligned_cols=75 Identities=13% Similarity=0.038 Sum_probs=49.6
Q ss_pred CCCCeEEEEcCCcchh---HHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCC-----------C
Q 024008 107 LPKGRALVPGCGTGYD---VVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP-----------T 172 (274)
Q Consensus 107 ~~~~~vLDiG~G~G~~---~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~-----------~ 172 (274)
..+++||=.|++.|.- +..+++.|++|++++.++...+...+.+...+ .++.++..|+.+... -
T Consensus 6 l~~k~vlItGas~gIG~~l~~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~ 83 (252)
T PRK07035 6 LTGKIALVTGASRGIGEAIAKLLAQQGAHVIVSSRKLDGCQAVADAIVAAG--GKAEALACHIGEMEQIDALFAHIRERH 83 (252)
T ss_pred cCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CeEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence 3456788888776633 34455589999999998877766655554433 347778888875210 1
Q ss_pred CCeeEEEeccc
Q 024008 173 ELFDLIFDYTF 183 (274)
Q Consensus 173 ~~fD~v~~~~~ 183 (274)
+++|+++.+..
T Consensus 84 ~~id~li~~ag 94 (252)
T PRK07035 84 GRLDILVNNAA 94 (252)
T ss_pred CCCCEEEECCC
Confidence 36899887654
No 444
>PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures []. The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing
Probab=73.64 E-value=12 Score=31.43 Aligned_cols=134 Identities=11% Similarity=0.030 Sum_probs=69.7
Q ss_pred CCCeEEEEcCCcchhHHHhhC-------CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC-----CCC----
Q 024008 108 PKGRALVPGCGTGYDVVAMAS-------PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT-----WCP---- 171 (274)
Q Consensus 108 ~~~~vLDiG~G~G~~~~~l~~-------~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-----~~~---- 171 (274)
++..++|+|||.|.++.+++. ....++.||-..... .+-...........+.=+..|+.+ ...
T Consensus 18 ~~~~~vEfGaGrg~LS~~v~~~~~~~~~~~~~~~lIDR~~~R~-K~D~~~~~~~~~~~~~R~riDI~dl~l~~~~~~~~~ 96 (259)
T PF05206_consen 18 PDSCFVEFGAGRGELSRWVAQALQEDKPSNSRFVLIDRASNRH-KADNKIRKDESEPKFERLRIDIKDLDLSKLPELQND 96 (259)
T ss_pred CCCEEEEECCCchHHHHHHHHHhhhcccCCccEEEEecCcccc-cchhhhhccCCCCceEEEEEEeeccchhhcccccCC
Confidence 456899999999999998887 135899999865433 222223222110123334444443 221
Q ss_pred CCCeeEEEecccccccChhHHHHHHHHHHhccc-------CCcEEEEEEccCCCC---CCCCC----cccCHH-HHHHHH
Q 024008 172 TELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLK-------PDGELITLMFPISDH---VGGPP----YKVSVS-DYEEVL 236 (274)
Q Consensus 172 ~~~fD~v~~~~~~~~~~~~~~~~~l~~l~~~L~-------~gG~l~~~~~~~~~~---~~~~~----~~~~~~-~~~~~~ 236 (274)
..++ ++++-+.-.... +-.++.+.+..+ ..|.++..+.+..-. .-+.+ ..++.+ ++..+.
T Consensus 97 ~~~v-v~isKHLCG~AT----DlaLRcl~~~~~~~~~~~~~~gi~iA~CCHH~C~~~~yv~~~fl~~~g~~~~~eF~~l~ 171 (259)
T PF05206_consen 97 EKPV-VAISKHLCGAAT----DLALRCLLNSQKLSEGNGSVRGIVIAPCCHHRCDWDSYVGKEFLSELGFTSEQEFNALT 171 (259)
T ss_pred CCcE-EEEEccccccch----hHHHHhhccCccccccCCccCeEEEEeCCCCcCCHHHhCCHHHHHHcCCChHHHHHHHh
Confidence 1222 444445444332 334555555554 567777655443211 00111 123444 666666
Q ss_pred hcCCCcEEEEe
Q 024008 237 QPMGFQAISIV 247 (274)
Q Consensus 237 ~~~Gf~~~~~~ 247 (274)
....|.+....
T Consensus 172 ~msSWAtcg~~ 182 (259)
T PF05206_consen 172 RMSSWATCGMR 182 (259)
T ss_pred cccceeecCCc
Confidence 66666655544
No 445
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=73.62 E-value=24 Score=29.99 Aligned_cols=96 Identities=20% Similarity=0.193 Sum_probs=55.5
Q ss_pred CeEEEEcCCcchh--HHHhhCCCCeEEEEeCChHHHHHHHHHhhcC--------CCC---------cceEEEEcccCCCC
Q 024008 110 GRALVPGCGTGYD--VVAMASPERYVVGLEISDIAIKKAEELSSSL--------PNA---------KFVSFLKADFFTWC 170 (274)
Q Consensus 110 ~~vLDiG~G~G~~--~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~--------~~~---------~~v~~~~~d~~~~~ 170 (274)
.+|.=||+|.=.. +..++..|.+|+.+|.+++.++.+++..... ... .++.+ ..|+.+..
T Consensus 4 ~kIaViGaG~mG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~d~~~a~ 82 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTAFHGFDVTIYDISDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNRITL-TTDLAEAV 82 (287)
T ss_pred cEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeEE-eCCHHHHh
Confidence 3677888875433 3344557889999999999988887653210 110 12221 22322111
Q ss_pred CCCCeeEEEecccccccChhHHHHHHHHHHhcccCCcEEEE
Q 024008 171 PTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELIT 211 (274)
Q Consensus 171 ~~~~fD~v~~~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~ 211 (274)
...|+|+..-. .. .+....++.++...++++.++..
T Consensus 83 --~~aDlVieavp-e~--~~~k~~~~~~l~~~~~~~~ii~s 118 (287)
T PRK08293 83 --KDADLVIEAVP-ED--PEIKGDFYEELAKVAPEKTIFAT 118 (287)
T ss_pred --cCCCEEEEecc-CC--HHHHHHHHHHHHhhCCCCCEEEE
Confidence 34688874322 11 13456777888888877765543
No 446
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=73.58 E-value=7.7 Score=31.20 Aligned_cols=52 Identities=17% Similarity=0.210 Sum_probs=32.6
Q ss_pred HHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCC-CcEEEEeecccc
Q 024008 192 RAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMG-FQAISIVDNKLA 252 (274)
Q Consensus 192 ~~~~l~~l~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G-f~~~~~~~~~~~ 252 (274)
+..++.++.++|+|||.+++...... . ...-...+++..| |.......+...
T Consensus 35 ~~~~~~~~~rvLk~~g~~~i~~~~~~--------~-~~~~~~~~~~~~g~~~~~~~iiW~K~ 87 (231)
T PF01555_consen 35 MEEWLKECYRVLKPGGSIFIFIDDRE--------I-AGFLFELALEIFGGFFLRNEIIWNKP 87 (231)
T ss_dssp HHHHHHHHHHHEEEEEEEEEEE-CCE--------E-CTHHHHHHHHHHTT-EEEEEEEEE-S
T ss_pred HHHHHHHHHhhcCCCeeEEEEecchh--------h-hHHHHHHHHHHhhhhheeccceeEec
Confidence 46788999999999999988763221 0 1123444555557 888776665554
No 447
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=73.50 E-value=21 Score=34.77 Aligned_cols=97 Identities=16% Similarity=0.138 Sum_probs=62.8
Q ss_pred CeEEEEcCCc--chhHHHhh-CCCCeEEEEeCChHHHHHHHHHhhcC-------C-CC--------cceEEEEcccCCCC
Q 024008 110 GRALVPGCGT--GYDVVAMA-SPERYVVGLEISDIAIKKAEELSSSL-------P-NA--------KFVSFLKADFFTWC 170 (274)
Q Consensus 110 ~~vLDiG~G~--G~~~~~l~-~~~~~v~~iD~s~~~~~~a~~~~~~~-------~-~~--------~~v~~~~~d~~~~~ 170 (274)
.+|.-||+|+ ..++..++ ..|..|+.+|.+++.++.++.++... + +. .++++. .|+ +
T Consensus 310 ~~v~ViGaG~mG~giA~~~a~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~-~~~-~-- 385 (708)
T PRK11154 310 NKVGVLGGGLMGGGIAYVTATKAGLPVRIKDINPQGINHALKYSWDLLDKKVKRRHLKPSERDKQMALISGT-TDY-R-- 385 (708)
T ss_pred cEEEEECCchhhHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhcEEEe-CCh-H--
Confidence 5799999988 34445556 67999999999999998876654321 1 00 123322 222 1
Q ss_pred CCCCeeEEEecccccccChhHHHHHHHHHHhcccCCcEEEEEE
Q 024008 171 PTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLM 213 (274)
Q Consensus 171 ~~~~fD~v~~~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~ 213 (274)
.-...|+|+=. +++.+ +...+++.++.+.++|+.+|....
T Consensus 386 ~~~~aDlViEa-v~E~~--~~K~~v~~~le~~~~~~~ilasnT 425 (708)
T PRK11154 386 GFKHADVVIEA-VFEDL--ALKQQMVAEVEQNCAPHTIFASNT 425 (708)
T ss_pred HhccCCEEeec-ccccH--HHHHHHHHHHHhhCCCCcEEEECC
Confidence 12456888732 33333 455788999999999998887644
No 448
>PRK07097 gluconate 5-dehydrogenase; Provisional
Probab=73.49 E-value=18 Score=29.93 Aligned_cols=76 Identities=17% Similarity=0.083 Sum_probs=52.3
Q ss_pred CCCCeEEEEcCCcchh---HHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCC-----------CC
Q 024008 107 LPKGRALVPGCGTGYD---VVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC-----------PT 172 (274)
Q Consensus 107 ~~~~~vLDiG~G~G~~---~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-----------~~ 172 (274)
..++++|-.|++.|.- +..+++.|++++.++-+++.++.........+ .++.++.+|+.+.. ..
T Consensus 8 ~~~k~~lItGa~~~iG~~ia~~l~~~G~~vv~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 85 (265)
T PRK07097 8 LKGKIALITGASYGIGFAIAKAYAKAGATIVFNDINQELVDKGLAAYRELG--IEAHGYVCDVTDEDGVQAMVSQIEKEV 85 (265)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhcC--CceEEEEcCCCCHHHHHHHHHHHHHhC
Confidence 4457888888876532 34556689999999988877776666554433 35888999997621 11
Q ss_pred CCeeEEEecccc
Q 024008 173 ELFDLIFDYTFF 184 (274)
Q Consensus 173 ~~fD~v~~~~~~ 184 (274)
++.|.++.+...
T Consensus 86 ~~id~li~~ag~ 97 (265)
T PRK07097 86 GVIDILVNNAGI 97 (265)
T ss_pred CCCCEEEECCCC
Confidence 468999977654
No 449
>PRK07890 short chain dehydrogenase; Provisional
Probab=73.34 E-value=20 Score=29.45 Aligned_cols=74 Identities=16% Similarity=0.110 Sum_probs=48.7
Q ss_pred CCCeEEEEcCCcchh---HHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCC-----------CC
Q 024008 108 PKGRALVPGCGTGYD---VVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP-----------TE 173 (274)
Q Consensus 108 ~~~~vLDiG~G~G~~---~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~-----------~~ 173 (274)
++++||=.|++.|.- +..+++.|++|++++.++...+.........+ .++.++..|+.+... -+
T Consensus 4 ~~k~vlItGa~~~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~g 81 (258)
T PRK07890 4 KGKVVVVSGVGPGLGRTLAVRAARAGADVVLAARTAERLDEVAAEIDDLG--RRALAVPTDITDEDQCANLVALALERFG 81 (258)
T ss_pred CCCEEEEECCCCcHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHhC--CceEEEecCCCCHHHHHHHHHHHHHHcC
Confidence 456788777655422 23455589999999998876666555544332 457889999876211 14
Q ss_pred CeeEEEeccc
Q 024008 174 LFDLIFDYTF 183 (274)
Q Consensus 174 ~fD~v~~~~~ 183 (274)
+.|+++.+..
T Consensus 82 ~~d~vi~~ag 91 (258)
T PRK07890 82 RVDALVNNAF 91 (258)
T ss_pred CccEEEECCc
Confidence 6899887754
No 450
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=73.29 E-value=21 Score=32.74 Aligned_cols=86 Identities=16% Similarity=0.000 Sum_probs=52.1
Q ss_pred CCCCCeEEEEcCCcchhHHHhhC----CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCeeEEEec
Q 024008 106 ALPKGRALVPGCGTGYDVVAMAS----PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDY 181 (274)
Q Consensus 106 ~~~~~~vLDiG~G~G~~~~~l~~----~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~ 181 (274)
...+.+|+=+|+|. .+..+++ .|++|+++|.++.....+.. .+ .... ++.+.. ...|+|+..
T Consensus 251 ~LaGKtVgVIG~G~--IGr~vA~rL~a~Ga~ViV~e~dp~~a~~A~~----~G----~~~~--~leell--~~ADIVI~a 316 (476)
T PTZ00075 251 MIAGKTVVVCGYGD--VGKGCAQALRGFGARVVVTEIDPICALQAAM----EG----YQVV--TLEDVV--ETADIFVTA 316 (476)
T ss_pred CcCCCEEEEECCCH--HHHHHHHHHHHCCCEEEEEeCCchhHHHHHh----cC----ceec--cHHHHH--hcCCEEEEC
Confidence 45678999999986 4333333 68899999988765433322 12 1211 222222 357999865
Q ss_pred ccccccChhHHHHHH-HHHHhcccCCcEEEEEE
Q 024008 182 TFFCAIEPEMRAAWA-QKIKDFLKPDGELITLM 213 (274)
Q Consensus 182 ~~~~~~~~~~~~~~l-~~l~~~L~~gG~l~~~~ 213 (274)
..- ..++ .+....+|||++++-+.
T Consensus 317 tGt--------~~iI~~e~~~~MKpGAiLINvG 341 (476)
T PTZ00075 317 TGN--------KDIITLEHMRRMKNNAIVGNIG 341 (476)
T ss_pred CCc--------ccccCHHHHhccCCCcEEEEcC
Confidence 211 1223 46788899999987654
No 451
>PRK07062 short chain dehydrogenase; Provisional
Probab=73.14 E-value=20 Score=29.60 Aligned_cols=78 Identities=14% Similarity=0.026 Sum_probs=50.7
Q ss_pred CCCCeEEEEcCCcchh---HHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCC-----------CC
Q 024008 107 LPKGRALVPGCGTGYD---VVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC-----------PT 172 (274)
Q Consensus 107 ~~~~~vLDiG~G~G~~---~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-----------~~ 172 (274)
..++.+|=.|++.|.- +..+++.|++|+.++.+++.++.+.+.........++.++.+|+.+.. ..
T Consensus 6 l~~k~~lItGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~ 85 (265)
T PRK07062 6 LEGRVAVVTGGSSGIGLATVELLLEAGASVAICGRDEERLASAEARLREKFPGARLLAARCDVLDEADVAAFAAAVEARF 85 (265)
T ss_pred cCCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhhCCCceEEEEEecCCCHHHHHHHHHHHHHhc
Confidence 3457888888766532 344555899999999988777666555443211135778888987621 12
Q ss_pred CCeeEEEecccc
Q 024008 173 ELFDLIFDYTFF 184 (274)
Q Consensus 173 ~~fD~v~~~~~~ 184 (274)
++.|+++.+...
T Consensus 86 g~id~li~~Ag~ 97 (265)
T PRK07062 86 GGVDMLVNNAGQ 97 (265)
T ss_pred CCCCEEEECCCC
Confidence 468998877543
No 452
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=73.12 E-value=17 Score=32.80 Aligned_cols=114 Identities=18% Similarity=0.043 Sum_probs=61.8
Q ss_pred CeEEEEcCCcchhH--HHhhCCCCeEEEEeCChHHHHHHHHHhhc---CCC---------CcceEEEEcccCCCCCCCCe
Q 024008 110 GRALVPGCGTGYDV--VAMASPERYVVGLEISDIAIKKAEELSSS---LPN---------AKFVSFLKADFFTWCPTELF 175 (274)
Q Consensus 110 ~~vLDiG~G~G~~~--~~l~~~~~~v~~iD~s~~~~~~a~~~~~~---~~~---------~~~v~~~~~d~~~~~~~~~f 175 (274)
.+|.=||.|.-... ..|++.|.+|+++|.+++.++..+..... .++ ..+..+. .+ .+..
T Consensus 4 ~kI~VIGlG~~G~~~A~~La~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~l~~~~~~g~l~~~-~~------~~~a 76 (415)
T PRK11064 4 ETISVIGLGYIGLPTAAAFASRQKQVIGVDINQHAVDTINRGEIHIVEPDLDMVVKTAVEGGYLRAT-TT------PEPA 76 (415)
T ss_pred cEEEEECcchhhHHHHHHHHhCCCEEEEEeCCHHHHHHHHCCCCCcCCCCHHHHHHHHhhcCceeee-cc------cccC
Confidence 46777888865443 34556899999999999988864321100 000 0011111 11 1246
Q ss_pred eEEEeccccc-----ccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcC
Q 024008 176 DLIFDYTFFC-----AIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPM 239 (274)
Q Consensus 176 D~v~~~~~~~-----~~~~~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (274)
|+|+..-.-. ..+-.....+++.+...+++|..++...-.. .-+.+++...+.+.
T Consensus 77 Dvvii~vptp~~~~~~~dl~~v~~~~~~i~~~l~~g~iVI~~STv~---------pgtt~~~~~~l~~~ 136 (415)
T PRK11064 77 DAFLIAVPTPFKGDHEPDLTYVEAAAKSIAPVLKKGDLVILESTSP---------VGATEQMAEWLAEA 136 (415)
T ss_pred CEEEEEcCCCCCCCCCcChHHHHHHHHHHHHhCCCCCEEEEeCCCC---------CCHHHHHHHHHHHh
Confidence 7777542211 0111455667788899998877665543111 11566666666553
No 453
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=73.01 E-value=21 Score=34.80 Aligned_cols=97 Identities=19% Similarity=0.130 Sum_probs=62.7
Q ss_pred CeEEEEcCCc--chhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcC-------C-CC--------cceEEEEcccCCCCC
Q 024008 110 GRALVPGCGT--GYDVVAMASPERYVVGLEISDIAIKKAEELSSSL-------P-NA--------KFVSFLKADFFTWCP 171 (274)
Q Consensus 110 ~~vLDiG~G~--G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~-------~-~~--------~~v~~~~~d~~~~~~ 171 (274)
.+|.-||+|+ ...+..++..|..|+.+|.+++.++.+..++... + .+ .++++. .|+. .
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~-~~~~---~ 389 (715)
T PRK11730 314 KQAAVLGAGIMGGGIAYQSASKGVPVIMKDINQKALDLGMTEAAKLLNKQVERGKIDGAKMAGVLSSIRPT-LDYA---G 389 (715)
T ss_pred ceEEEECCchhHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEe-CCHH---H
Confidence 4799999998 3445566678999999999999998876654221 1 00 123322 2221 1
Q ss_pred CCCeeEEEecccccccChhHHHHHHHHHHhcccCCcEEEEEE
Q 024008 172 TELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLM 213 (274)
Q Consensus 172 ~~~fD~v~~~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~ 213 (274)
-...|+|+-. +.+.+ +....++.++.+.++|+.+|....
T Consensus 390 ~~~aDlViEa-v~E~l--~~K~~vf~~l~~~~~~~~ilasNT 428 (715)
T PRK11730 390 FERVDVVVEA-VVENP--KVKAAVLAEVEQKVREDTILASNT 428 (715)
T ss_pred hcCCCEEEec-ccCcH--HHHHHHHHHHHhhCCCCcEEEEcC
Confidence 2456888732 33333 455788999999999998776643
No 454
>PRK05396 tdh L-threonine 3-dehydrogenase; Validated
Probab=72.96 E-value=12 Score=32.48 Aligned_cols=96 Identities=21% Similarity=0.261 Sum_probs=55.0
Q ss_pred CCCCeEEEEcCCc-chhHHHhhC-CCC-eEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccC----CCCCCCCeeEEE
Q 024008 107 LPKGRALVPGCGT-GYDVVAMAS-PER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFF----TWCPTELFDLIF 179 (274)
Q Consensus 107 ~~~~~vLDiG~G~-G~~~~~l~~-~~~-~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~----~~~~~~~fD~v~ 179 (274)
.++.+||-.|+|. |..+..+++ .|. ++++++.+++..+.+++.-. ..-+.....+.. .....+.+|+|+
T Consensus 162 ~~g~~vlV~~~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~lg~----~~~~~~~~~~~~~~~~~~~~~~~~d~v~ 237 (341)
T PRK05396 162 LVGEDVLITGAGPIGIMAAAVAKHVGARHVVITDVNEYRLELARKMGA----TRAVNVAKEDLRDVMAELGMTEGFDVGL 237 (341)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHhCC----cEEecCccccHHHHHHHhcCCCCCCEEE
Confidence 3566777777643 455555665 677 68888888877776655321 000111111111 122345689998
Q ss_pred ecccccccChhHHHHHHHHHHhcccCCcEEEEEEc
Q 024008 180 DYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMF 214 (274)
Q Consensus 180 ~~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~ 214 (274)
.... . ...+..+.++|+++|.++....
T Consensus 238 d~~g----~----~~~~~~~~~~l~~~G~~v~~g~ 264 (341)
T PRK05396 238 EMSG----A----PSAFRQMLDNMNHGGRIAMLGI 264 (341)
T ss_pred ECCC----C----HHHHHHHHHHHhcCCEEEEEec
Confidence 5211 1 2345778889999999888754
No 455
>PRK06914 short chain dehydrogenase; Provisional
Probab=72.64 E-value=22 Score=29.70 Aligned_cols=74 Identities=14% Similarity=0.136 Sum_probs=46.6
Q ss_pred CeEEEEcCCcchh---HHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCC----------CCCee
Q 024008 110 GRALVPGCGTGYD---VVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP----------TELFD 176 (274)
Q Consensus 110 ~~vLDiG~G~G~~---~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~----------~~~fD 176 (274)
.++|-.|++.|.- +..+++.|++|++++-+++..+.........+...++.++.+|+.+... -++.|
T Consensus 4 k~~lItGasg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~~~~id 83 (280)
T PRK06914 4 KIAIVTGASSGFGLLTTLELAKKGYLVIATMRNPEKQENLLSQATQLNLQQNIKVQQLDVTDQNSIHNFQLVLKEIGRID 83 (280)
T ss_pred CEEEEECCCchHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcCCCCceeEEecCCCCHHHHHHHHHHHHhcCCee
Confidence 4678888644322 2344558999999998877666555444333323468899999976221 14578
Q ss_pred EEEeccc
Q 024008 177 LIFDYTF 183 (274)
Q Consensus 177 ~v~~~~~ 183 (274)
.|+.+..
T Consensus 84 ~vv~~ag 90 (280)
T PRK06914 84 LLVNNAG 90 (280)
T ss_pred EEEECCc
Confidence 8887643
No 456
>PRK07109 short chain dehydrogenase; Provisional
Probab=72.26 E-value=65 Score=27.97 Aligned_cols=59 Identities=15% Similarity=0.077 Sum_probs=39.7
Q ss_pred CCCeEEEEcCCcchh---HHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC
Q 024008 108 PKGRALVPGCGTGYD---VVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT 168 (274)
Q Consensus 108 ~~~~vLDiG~G~G~~---~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~ 168 (274)
.+.+||=.|++.|.- +..+++.|++|+.++-+++.++...+.+...+ .++.++.+|+.+
T Consensus 7 ~~k~vlITGas~gIG~~la~~la~~G~~Vvl~~R~~~~l~~~~~~l~~~g--~~~~~v~~Dv~d 68 (334)
T PRK07109 7 GRQVVVITGASAGVGRATARAFARRGAKVVLLARGEEGLEALAAEIRAAG--GEALAVVADVAD 68 (334)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcC--CcEEEEEecCCC
Confidence 346788888655422 23455589999999998887776665554433 357778888764
No 457
>PRK07677 short chain dehydrogenase; Provisional
Probab=71.80 E-value=21 Score=29.32 Aligned_cols=71 Identities=14% Similarity=0.076 Sum_probs=46.4
Q ss_pred CeEEEEcCCcch---hHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCC-----------CCCCe
Q 024008 110 GRALVPGCGTGY---DVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC-----------PTELF 175 (274)
Q Consensus 110 ~~vLDiG~G~G~---~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-----------~~~~f 175 (274)
+++|-.|++.|. .+..+++.|++|++++.++...+.....+...+ .++.++.+|+.+.. .-++.
T Consensus 2 k~~lItG~s~giG~~ia~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i 79 (252)
T PRK07677 2 KVVIITGGSSGMGKAMAKRFAEEGANVVITGRTKEKLEEAKLEIEQFP--GQVLTVQMDVRNPEDVQKMVEQIDEKFGRI 79 (252)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEecCCCHHHHHHHHHHHHHHhCCc
Confidence 467777776552 233445589999999988876666655544332 46888999987521 01468
Q ss_pred eEEEecc
Q 024008 176 DLIFDYT 182 (274)
Q Consensus 176 D~v~~~~ 182 (274)
|.++.+.
T Consensus 80 d~lI~~a 86 (252)
T PRK07677 80 DALINNA 86 (252)
T ss_pred cEEEECC
Confidence 9988764
No 458
>PRK06940 short chain dehydrogenase; Provisional
Probab=71.79 E-value=59 Score=27.22 Aligned_cols=70 Identities=14% Similarity=-0.023 Sum_probs=44.3
Q ss_pred eEEEEcCCcchhHHHhhC---CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCC----------CCCCeeE
Q 024008 111 RALVPGCGTGYDVVAMAS---PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC----------PTELFDL 177 (274)
Q Consensus 111 ~vLDiG~G~G~~~~~l~~---~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~----------~~~~fD~ 177 (274)
.+|=-|+ |..+..+++ .|++|+.++.++..++...+.+...+ .++.++.+|+.+.. ..++.|+
T Consensus 4 ~~lItGa--~gIG~~la~~l~~G~~Vv~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dv~d~~~i~~~~~~~~~~g~id~ 79 (275)
T PRK06940 4 VVVVIGA--GGIGQAIARRVGAGKKVLLADYNEENLEAAAKTLREAG--FDVSTQEVDVSSRESVKALAATAQTLGPVTG 79 (275)
T ss_pred EEEEECC--ChHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcC--CeEEEEEeecCCHHHHHHHHHHHHhcCCCCE
Confidence 4454554 345544443 68899999998876665554443332 35788889987621 1246899
Q ss_pred EEecccc
Q 024008 178 IFDYTFF 184 (274)
Q Consensus 178 v~~~~~~ 184 (274)
++.+..+
T Consensus 80 li~nAG~ 86 (275)
T PRK06940 80 LVHTAGV 86 (275)
T ss_pred EEECCCc
Confidence 9887654
No 459
>PLN02989 cinnamyl-alcohol dehydrogenase family protein
Probab=71.24 E-value=14 Score=31.73 Aligned_cols=74 Identities=15% Similarity=0.090 Sum_probs=43.5
Q ss_pred CCeEEEEcCCcchhHHHhh----CCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCC----CCCeeEEEe
Q 024008 109 KGRALVPGCGTGYDVVAMA----SPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP----TELFDLIFD 180 (274)
Q Consensus 109 ~~~vLDiG~G~G~~~~~l~----~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~----~~~fD~v~~ 180 (274)
+++||-.| |+|..+..++ +.|.+|+++..++.............+...+++++.+|+.+... -...|+|+.
T Consensus 5 ~k~vlVtG-~~G~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~vih 83 (325)
T PLN02989 5 GKVVCVTG-ASGYIASWIVKLLLFRGYTINATVRDPKDRKKTDHLLALDGAKERLKLFKADLLDEGSFELAIDGCETVFH 83 (325)
T ss_pred CCEEEEEC-CchHHHHHHHHHHHHCCCEEEEEEcCCcchhhHHHHHhccCCCCceEEEeCCCCCchHHHHHHcCCCEEEE
Confidence 46788887 4566555444 47889888766654333322222111222468899999986321 135788887
Q ss_pred ccc
Q 024008 181 YTF 183 (274)
Q Consensus 181 ~~~ 183 (274)
...
T Consensus 84 ~A~ 86 (325)
T PLN02989 84 TAS 86 (325)
T ss_pred eCC
Confidence 654
No 460
>PRK06505 enoyl-(acyl carrier protein) reductase; Provisional
Probab=71.17 E-value=60 Score=27.12 Aligned_cols=74 Identities=16% Similarity=0.053 Sum_probs=44.8
Q ss_pred CCCeEEEEcCCc--c---hhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCC-----------C
Q 024008 108 PKGRALVPGCGT--G---YDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC-----------P 171 (274)
Q Consensus 108 ~~~~vLDiG~G~--G---~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-----------~ 171 (274)
+++.+|-.|++. | ..+..|++.|++|+.++.+....+..++.....+ ...++.+|+.+.. .
T Consensus 6 ~~k~~lVTGas~~~GIG~aiA~~la~~Ga~V~~~~r~~~~~~~~~~~~~~~g---~~~~~~~Dv~d~~~v~~~~~~~~~~ 82 (271)
T PRK06505 6 QGKRGLIMGVANDHSIAWGIAKQLAAQGAELAFTYQGEALGKRVKPLAESLG---SDFVLPCDVEDIASVDAVFEALEKK 82 (271)
T ss_pred CCCEEEEeCCCCCCcHHHHHHHHHHhCCCEEEEecCchHHHHHHHHHHHhcC---CceEEeCCCCCHHHHHHHHHHHHHH
Confidence 456888888864 3 2345566689999998876543333333322222 1246788887621 1
Q ss_pred CCCeeEEEecccc
Q 024008 172 TELFDLIFDYTFF 184 (274)
Q Consensus 172 ~~~fD~v~~~~~~ 184 (274)
.++.|+++.+..+
T Consensus 83 ~g~iD~lVnnAG~ 95 (271)
T PRK06505 83 WGKLDFVVHAIGF 95 (271)
T ss_pred hCCCCEEEECCcc
Confidence 2578999987543
No 461
>cd01842 SGNH_hydrolase_like_5 SGNH_hydrolase subfamily. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=71.15 E-value=35 Score=26.88 Aligned_cols=81 Identities=11% Similarity=0.073 Sum_probs=50.4
Q ss_pred CCCCCeeEEEecccccccCh----------hHHHHHHHHHHhcccCCcEEEEEEccCCC-CCCCC---C------c--cc
Q 024008 170 CPTELFDLIFDYTFFCAIEP----------EMRAAWAQKIKDFLKPDGELITLMFPISD-HVGGP---P------Y--KV 227 (274)
Q Consensus 170 ~~~~~fD~v~~~~~~~~~~~----------~~~~~~l~~l~~~L~~gG~l~~~~~~~~~-~~~~~---~------~--~~ 227 (274)
...++.|+|+.+..+..+.. ..+++++.++..+|+++..++...-.+.. ...+. + . ..
T Consensus 46 l~gg~~DVIi~Ns~LWDl~ry~~~~~~~Y~~NL~~Lf~rLk~~lp~~allIW~tt~Pv~~~~~ggfl~~~~~~~~~~lr~ 125 (183)
T cd01842 46 LEGGRLDLVIMNSCLWDLSRYQRNSMKTYRENLERLFSKLDSVLPIECLIVWNTAMPVAEEIKGGFLLPELHDLSKSLRY 125 (183)
T ss_pred ecCCceeEEEEecceecccccCCCCHHHHHHHHHHHHHHHHhhCCCccEEEEecCCCCCcCCcCceeccccccccccchh
Confidence 34467899999988876632 44677888888888899887776544422 21111 0 0 00
Q ss_pred ----CHHHHHHHHhcCCCcEEEEeecc
Q 024008 228 ----SVSDYEEVLQPMGFQAISIVDNK 250 (274)
Q Consensus 228 ----~~~~~~~~~~~~Gf~~~~~~~~~ 250 (274)
-...-.+.++.+||.+.++...-
T Consensus 126 dv~eaN~~A~~va~~~~~dVlDLh~~f 152 (183)
T cd01842 126 DVLEGNFYSATLAKCYGFDVLDLHYHF 152 (183)
T ss_pred HHHHHHHHHHHHHHHcCceeeehHHHH
Confidence 11223456788899988876643
No 462
>PRK07814 short chain dehydrogenase; Provisional
Probab=70.76 E-value=26 Score=29.03 Aligned_cols=74 Identities=16% Similarity=0.082 Sum_probs=49.0
Q ss_pred CCCCeEEEEcCCcchhHH----HhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCC-----------
Q 024008 107 LPKGRALVPGCGTGYDVV----AMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP----------- 171 (274)
Q Consensus 107 ~~~~~vLDiG~G~G~~~~----~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~----------- 171 (274)
.+++++|=.|++ |..+. .+++.|++|++++.+++.++.........+ .++.++.+|+.+...
T Consensus 8 ~~~~~vlItGas-ggIG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~ 84 (263)
T PRK07814 8 LDDQVAVVTGAG-RGLGAAIALAFAEAGADVLIAARTESQLDEVAEQIRAAG--RRAHVVAADLAHPEATAGLAGQAVEA 84 (263)
T ss_pred CCCCEEEEECCC-ChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHHH
Confidence 346788888864 44443 344589999999998877666555544332 357888899876211
Q ss_pred CCCeeEEEeccc
Q 024008 172 TELFDLIFDYTF 183 (274)
Q Consensus 172 ~~~fD~v~~~~~ 183 (274)
-+++|+|+.+..
T Consensus 85 ~~~id~vi~~Ag 96 (263)
T PRK07814 85 FGRLDIVVNNVG 96 (263)
T ss_pred cCCCCEEEECCC
Confidence 146899987643
No 463
>PRK05876 short chain dehydrogenase; Provisional
Probab=70.65 E-value=62 Score=27.07 Aligned_cols=59 Identities=17% Similarity=0.098 Sum_probs=38.5
Q ss_pred CCCeEEEEcCCcchh---HHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC
Q 024008 108 PKGRALVPGCGTGYD---VVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT 168 (274)
Q Consensus 108 ~~~~vLDiG~G~G~~---~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~ 168 (274)
.++++|=.|++.|.- +..|++.|++|+.++.++..++...+.+...+ .++.++.+|+.+
T Consensus 5 ~~k~vlVTGas~gIG~ala~~La~~G~~Vv~~~r~~~~l~~~~~~l~~~~--~~~~~~~~Dv~d 66 (275)
T PRK05876 5 PGRGAVITGGASGIGLATGTEFARRGARVVLGDVDKPGLRQAVNHLRAEG--FDVHGVMCDVRH 66 (275)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CeEEEEeCCCCC
Confidence 456788777765422 33445589999999998877666554443332 347777888764
No 464
>PRK08339 short chain dehydrogenase; Provisional
Probab=70.58 E-value=25 Score=29.19 Aligned_cols=76 Identities=24% Similarity=0.143 Sum_probs=50.4
Q ss_pred CCCCeEEEEcCCcchh---HHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCC----------CCC
Q 024008 107 LPKGRALVPGCGTGYD---VVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC----------PTE 173 (274)
Q Consensus 107 ~~~~~vLDiG~G~G~~---~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~----------~~~ 173 (274)
..++++|-.|++.|.- +..|++.|++|+.++.+++.++...+.+.... ..++.++.+|+.+.. ..+
T Consensus 6 l~~k~~lItGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~Dv~~~~~i~~~~~~~~~~g 84 (263)
T PRK08339 6 LSGKLAFTTASSKGIGFGVARVLARAGADVILLSRNEENLKKAREKIKSES-NVDVSYIVADLTKREDLERTVKELKNIG 84 (263)
T ss_pred CCCCEEEEeCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhc-CCceEEEEecCCCHHHHHHHHHHHHhhC
Confidence 3466788888766532 34555689999999998887766665543321 135788899988621 114
Q ss_pred CeeEEEeccc
Q 024008 174 LFDLIFDYTF 183 (274)
Q Consensus 174 ~fD~v~~~~~ 183 (274)
+.|+++.+..
T Consensus 85 ~iD~lv~nag 94 (263)
T PRK08339 85 EPDIFFFSTG 94 (263)
T ss_pred CCcEEEECCC
Confidence 6898887643
No 465
>PRK06484 short chain dehydrogenase; Validated
Probab=70.57 E-value=73 Score=29.44 Aligned_cols=71 Identities=13% Similarity=0.033 Sum_probs=47.0
Q ss_pred CCCeEEEEcCCcch---hHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCC-----------CCC
Q 024008 108 PKGRALVPGCGTGY---DVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC-----------PTE 173 (274)
Q Consensus 108 ~~~~vLDiG~G~G~---~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-----------~~~ 173 (274)
.++.+|=.|++.|. .+..|++.|++|+.++.+++.++...+... .++..+.+|+.+.. ..+
T Consensus 268 ~~k~~lItGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~-----~~~~~~~~D~~~~~~~~~~~~~~~~~~g 342 (520)
T PRK06484 268 SPRVVAITGGARGIGRAVADRFAAAGDRLLIIDRDAEGAKKLAEALG-----DEHLSVQADITDEAAVESAFAQIQARWG 342 (520)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhC-----CceeEEEccCCCHHHHHHHHHHHHHHcC
Confidence 45678888876652 234455589999999998877766654431 24566788887621 125
Q ss_pred CeeEEEeccc
Q 024008 174 LFDLIFDYTF 183 (274)
Q Consensus 174 ~fD~v~~~~~ 183 (274)
+.|+++.+..
T Consensus 343 ~id~li~nAg 352 (520)
T PRK06484 343 RLDVLVNNAG 352 (520)
T ss_pred CCCEEEECCC
Confidence 6899997654
No 466
>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=70.55 E-value=46 Score=28.45 Aligned_cols=113 Identities=16% Similarity=0.114 Sum_probs=62.3
Q ss_pred eEEEEcCCc--chhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCC-CCCeeEEEeccccccc
Q 024008 111 RALVPGCGT--GYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP-TELFDLIFDYTFFCAI 187 (274)
Q Consensus 111 ~vLDiG~G~--G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~-~~~fD~v~~~~~~~~~ 187 (274)
+|-=||+|. ...+..|++.|.++++.|.+++.++.+.+. + +.. ..+..+... ....|+|+..-.
T Consensus 2 ~Ig~IGlG~MG~~mA~~L~~~g~~v~v~dr~~~~~~~~~~~----g----~~~-~~~~~e~~~~~~~~dvvi~~v~---- 68 (301)
T PRK09599 2 QLGMIGLGRMGGNMARRLLRGGHEVVGYDRNPEAVEALAEE----G----ATG-ADSLEELVAKLPAPRVVWLMVP---- 68 (301)
T ss_pred EEEEEcccHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHC----C----Cee-cCCHHHHHhhcCCCCEEEEEec----
Confidence 455577765 223455566888999999999877766431 1 111 112111110 012477774321
Q ss_pred ChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcEEE
Q 024008 188 EPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAIS 245 (274)
Q Consensus 188 ~~~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gf~~~~ 245 (274)
+......++..+...+++|..++- . +.. ...+..++.+.+++.|...++
T Consensus 69 ~~~~~~~v~~~l~~~l~~g~ivid-~-st~-------~~~~~~~~~~~~~~~g~~~~d 117 (301)
T PRK09599 69 AGEITDATIDELAPLLSPGDIVID-G-GNS-------YYKDDIRRAELLAEKGIHFVD 117 (301)
T ss_pred CCcHHHHHHHHHHhhCCCCCEEEe-C-CCC-------ChhHHHHHHHHHHHcCCEEEe
Confidence 112445667788888887754432 2 111 112456777888888877654
No 467
>cd08241 QOR1 Quinone oxidoreductase (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic
Probab=70.43 E-value=13 Score=31.35 Aligned_cols=94 Identities=19% Similarity=0.211 Sum_probs=54.7
Q ss_pred CCCCeEEEEcC--CcchhHHHhhC-CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC----CCCCCCeeEEE
Q 024008 107 LPKGRALVPGC--GTGYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT----WCPTELFDLIF 179 (274)
Q Consensus 107 ~~~~~vLDiG~--G~G~~~~~l~~-~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~----~~~~~~fD~v~ 179 (274)
.++..||-.|| +.|..+..+++ .|.++++++.++...+.++.. +...-+.....+... ......+|+++
T Consensus 138 ~~~~~vli~g~~~~~g~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~----g~~~~~~~~~~~~~~~i~~~~~~~~~d~v~ 213 (323)
T cd08241 138 QPGETVLVLGAAGGVGLAAVQLAKALGARVIAAASSEEKLALARAL----GADHVIDYRDPDLRERVKALTGGRGVDVVY 213 (323)
T ss_pred CCCCEEEEEcCCchHHHHHHHHHHHhCCEEEEEeCCHHHHHHHHHc----CCceeeecCCccHHHHHHHHcCCCCcEEEE
Confidence 34678999997 34455555555 788999999988877777542 111101111111111 12234689887
Q ss_pred ecccccccChhHHHHHHHHHHhcccCCcEEEEEE
Q 024008 180 DYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLM 213 (274)
Q Consensus 180 ~~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~ 213 (274)
.... ...+..+.++++++|.++...
T Consensus 214 ~~~g---------~~~~~~~~~~~~~~g~~v~~~ 238 (323)
T cd08241 214 DPVG---------GDVFEASLRSLAWGGRLLVIG 238 (323)
T ss_pred ECcc---------HHHHHHHHHhhccCCEEEEEc
Confidence 5321 123456778889999887654
No 468
>PRK06849 hypothetical protein; Provisional
Probab=70.28 E-value=12 Score=33.24 Aligned_cols=36 Identities=11% Similarity=0.073 Sum_probs=27.6
Q ss_pred CCeEEEEcCCcch---hHHHhhCCCCeEEEEeCChHHHH
Q 024008 109 KGRALVPGCGTGY---DVVAMASPERYVVGLEISDIAIK 144 (274)
Q Consensus 109 ~~~vLDiG~G~G~---~~~~l~~~~~~v~~iD~s~~~~~ 144 (274)
+++||=+|++.+. .+..+.+.|.+|+++|.++....
T Consensus 4 ~~~VLI~G~~~~~~l~iar~l~~~G~~Vi~~d~~~~~~~ 42 (389)
T PRK06849 4 KKTVLITGARAPAALELARLFHNAGHTVILADSLKYPLS 42 (389)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCchHHH
Confidence 5789999998863 44555668999999999875544
No 469
>cd08266 Zn_ADH_like1 Alcohol dehydrogenases of the MDR family. This group contains proteins related to the zinc-dependent alcohol dehydrogenases. However, while the group has structural zinc site characteristic of these enzymes, it lacks the consensus site for a catalytic zinc. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone
Probab=70.13 E-value=12 Score=32.01 Aligned_cols=94 Identities=23% Similarity=0.259 Sum_probs=53.9
Q ss_pred CCCCeEEEEcCC--cchhHHHhhC-CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC----CCCCCCeeEEE
Q 024008 107 LPKGRALVPGCG--TGYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT----WCPTELFDLIF 179 (274)
Q Consensus 107 ~~~~~vLDiG~G--~G~~~~~l~~-~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~----~~~~~~fD~v~ 179 (274)
.++.+||-.|++ .|..+..++. .|.+++.++.++...+.++.. +....+.....+... ......+|+++
T Consensus 165 ~~~~~vlI~g~~~~iG~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i 240 (342)
T cd08266 165 RPGETVLVHGAGSGVGSAAIQIAKLFGATVIATAGSEDKLERAKEL----GADYVIDYRKEDFVREVRELTGKRGVDVVV 240 (342)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHc----CCCeEEecCChHHHHHHHHHhCCCCCcEEE
Confidence 345688888875 4555555555 788999999888877766432 111111111111111 12234689888
Q ss_pred ecccccccChhHHHHHHHHHHhcccCCcEEEEEE
Q 024008 180 DYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLM 213 (274)
Q Consensus 180 ~~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~ 213 (274)
.... . ..+..+.+.++++|.++...
T Consensus 241 ~~~g-----~----~~~~~~~~~l~~~G~~v~~~ 265 (342)
T cd08266 241 EHVG-----A----ATWEKSLKSLARGGRLVTCG 265 (342)
T ss_pred ECCc-----H----HHHHHHHHHhhcCCEEEEEe
Confidence 5422 1 23466777889999887654
No 470
>PRK08862 short chain dehydrogenase; Provisional
Probab=70.10 E-value=25 Score=28.65 Aligned_cols=73 Identities=15% Similarity=0.072 Sum_probs=50.9
Q ss_pred CCCeEEEEcCCcch---hHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCC-----------CCC
Q 024008 108 PKGRALVPGCGTGY---DVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC-----------PTE 173 (274)
Q Consensus 108 ~~~~vLDiG~G~G~---~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-----------~~~ 173 (274)
.++++|=.|++.|. .+..+++.|++|+.++.+++.++...+.....+ ..+.....|..+.. .-+
T Consensus 4 ~~k~~lVtGas~GIG~aia~~la~~G~~V~~~~r~~~~l~~~~~~i~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~g 81 (227)
T PRK08862 4 KSSIILITSAGSVLGRTISCHFARLGATLILCDQDQSALKDTYEQCSALT--DNVYSFQLKDFSQESIRHLFDAIEQQFN 81 (227)
T ss_pred CCeEEEEECCccHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcC--CCeEEEEccCCCHHHHHHHHHHHHHHhC
Confidence 45688999988875 345666689999999999888877666554433 34666777776511 013
Q ss_pred -CeeEEEecc
Q 024008 174 -LFDLIFDYT 182 (274)
Q Consensus 174 -~fD~v~~~~ 182 (274)
..|+++.+.
T Consensus 82 ~~iD~li~na 91 (227)
T PRK08862 82 RAPDVLVNNW 91 (227)
T ss_pred CCCCEEEECC
Confidence 789998875
No 471
>PLN02896 cinnamyl-alcohol dehydrogenase
Probab=70.07 E-value=74 Score=27.69 Aligned_cols=74 Identities=15% Similarity=0.020 Sum_probs=45.1
Q ss_pred CCCCeEEEEcCCcchhHHHhhC----CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCC----CCCCeeEE
Q 024008 107 LPKGRALVPGCGTGYDVVAMAS----PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC----PTELFDLI 178 (274)
Q Consensus 107 ~~~~~vLDiG~G~G~~~~~l~~----~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~----~~~~fD~v 178 (274)
.++++||=.|+ +|..+..+++ .|.+|++++-++............ ..+++++.+|+.+.. .-..+|.|
T Consensus 8 ~~~~~vLVtG~-~GfIG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~---~~~~~~~~~Dl~~~~~~~~~~~~~d~V 83 (353)
T PLN02896 8 SATGTYCVTGA-TGYIGSWLVKLLLQRGYTVHATLRDPAKSLHLLSKWKE---GDRLRLFRADLQEEGSFDEAVKGCDGV 83 (353)
T ss_pred cCCCEEEEECC-CcHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHhhcc---CCeEEEEECCCCCHHHHHHHHcCCCEE
Confidence 34578888874 5666655544 788999988766543332222211 146889999987621 11357888
Q ss_pred Eecccc
Q 024008 179 FDYTFF 184 (274)
Q Consensus 179 ~~~~~~ 184 (274)
+.....
T Consensus 84 ih~A~~ 89 (353)
T PLN02896 84 FHVAAS 89 (353)
T ss_pred EECCcc
Confidence 876543
No 472
>PRK06128 oxidoreductase; Provisional
Probab=70.06 E-value=67 Score=27.22 Aligned_cols=104 Identities=15% Similarity=0.123 Sum_probs=58.2
Q ss_pred CCCCeEEEEcCCcchh---HHHhhCCCCeEEEEeCChH--HHHHHHHHhhcCCCCcceEEEEcccCCCC-----------
Q 024008 107 LPKGRALVPGCGTGYD---VVAMASPERYVVGLEISDI--AIKKAEELSSSLPNAKFVSFLKADFFTWC----------- 170 (274)
Q Consensus 107 ~~~~~vLDiG~G~G~~---~~~l~~~~~~v~~iD~s~~--~~~~a~~~~~~~~~~~~v~~~~~d~~~~~----------- 170 (274)
..++++|=.|++.|.- +..|++.|++|+.+..+.+ ..+...+.....+ .++.++.+|+.+..
T Consensus 53 l~~k~vlITGas~gIG~~~a~~l~~~G~~V~i~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~v~~~~~~~~~ 130 (300)
T PRK06128 53 LQGRKALITGADSGIGRATAIAFAREGADIALNYLPEEEQDAAEVVQLIQAEG--RKAVALPGDLKDEAFCRQLVERAVK 130 (300)
T ss_pred cCCCEEEEecCCCcHHHHHHHHHHHcCCEEEEEeCCcchHHHHHHHHHHHHcC--CeEEEEecCCCCHHHHHHHHHHHHH
Confidence 3457888888654422 2344458888887765432 2233333333322 35778889987621
Q ss_pred CCCCeeEEEecccccc-------cChhHH-----------HHHHHHHHhcccCCcEEEEE
Q 024008 171 PTELFDLIFDYTFFCA-------IEPEMR-----------AAWAQKIKDFLKPDGELITL 212 (274)
Q Consensus 171 ~~~~fD~v~~~~~~~~-------~~~~~~-----------~~~l~~l~~~L~~gG~l~~~ 212 (274)
.-++.|+++.+..... ++.+.. -.+++.+...++++|.++..
T Consensus 131 ~~g~iD~lV~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~iv~~ 190 (300)
T PRK06128 131 ELGGLDILVNIAGKQTAVKDIADITTEQFDATFKTNVYAMFWLCKAAIPHLPPGASIINT 190 (300)
T ss_pred HhCCCCEEEECCcccCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhcCcCCEEEEE
Confidence 0146899998764321 122222 23455666667778876654
No 473
>PRK06949 short chain dehydrogenase; Provisional
Probab=69.92 E-value=26 Score=28.70 Aligned_cols=74 Identities=15% Similarity=0.042 Sum_probs=48.3
Q ss_pred CCCCeEEEEcCCcchhHH----HhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCC-----------C
Q 024008 107 LPKGRALVPGCGTGYDVV----AMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC-----------P 171 (274)
Q Consensus 107 ~~~~~vLDiG~G~G~~~~----~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-----------~ 171 (274)
..+++||-.|+ +|..+. .+++.|++|++++.+++.++.........+ .++.++.+|+.+.. .
T Consensus 7 ~~~k~ilItGa-sg~IG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~ 83 (258)
T PRK06949 7 LEGKVALVTGA-SSGLGARFAQVLAQAGAKVVLASRRVERLKELRAEIEAEG--GAAHVVSLDVTDYQSIKAAVAHAETE 83 (258)
T ss_pred CCCCEEEEECC-CcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEecCCCHHHHHHHHHHHHHh
Confidence 44578888884 444443 344478899999999887766655543332 35788888987521 0
Q ss_pred CCCeeEEEeccc
Q 024008 172 TELFDLIFDYTF 183 (274)
Q Consensus 172 ~~~fD~v~~~~~ 183 (274)
.++.|+++.+..
T Consensus 84 ~~~~d~li~~ag 95 (258)
T PRK06949 84 AGTIDILVNNSG 95 (258)
T ss_pred cCCCCEEEECCC
Confidence 136798887654
No 474
>PRK07889 enoyl-(acyl carrier protein) reductase; Provisional
Probab=69.75 E-value=62 Score=26.69 Aligned_cols=101 Identities=14% Similarity=0.048 Sum_probs=58.4
Q ss_pred CCCeEEEEcCC-cchhHHH----hhCCCCeEEEEeCCh--HHHHHHHHHhhcCCCCcceEEEEcccCCCC----------
Q 024008 108 PKGRALVPGCG-TGYDVVA----MASPERYVVGLEISD--IAIKKAEELSSSLPNAKFVSFLKADFFTWC---------- 170 (274)
Q Consensus 108 ~~~~vLDiG~G-~G~~~~~----l~~~~~~v~~iD~s~--~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~---------- 170 (274)
.++++|-.|+| ++..+.. |++.|++|+.++.+. +..+...+... .++.++.+|+.+..
T Consensus 6 ~~k~~lItGa~~s~GIG~a~a~~la~~G~~v~l~~r~~~~~~~~~~~~~~~-----~~~~~~~~Dv~~~~~i~~~~~~~~ 80 (256)
T PRK07889 6 EGKRILVTGVITDSSIAFHVARVAQEQGAEVVLTGFGRALRLTERIAKRLP-----EPAPVLELDVTNEEHLASLADRVR 80 (256)
T ss_pred cCCEEEEeCCCCcchHHHHHHHHHHHCCCEEEEecCccchhHHHHHHHhcC-----CCCcEEeCCCCCHHHHHHHHHHHH
Confidence 45688999984 3444444 445899999988653 33444333321 24667888987621
Q ss_pred -CCCCeeEEEecccccc-------c---ChhHH-----------HHHHHHHHhcccCCcEEEEEE
Q 024008 171 -PTELFDLIFDYTFFCA-------I---EPEMR-----------AAWAQKIKDFLKPDGELITLM 213 (274)
Q Consensus 171 -~~~~fD~v~~~~~~~~-------~---~~~~~-----------~~~l~~l~~~L~~gG~l~~~~ 213 (274)
..+++|+++.+..+.. + +.+.. -.+.+.+...++++|.++...
T Consensus 81 ~~~g~iD~li~nAG~~~~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~m~~~g~Iv~is 145 (256)
T PRK07889 81 EHVDGLDGVVHSIGFAPQSALGGNFLDAPWEDVATALHVSAYSLKSLAKALLPLMNEGGSIVGLD 145 (256)
T ss_pred HHcCCCcEEEEccccccccccCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHhcccCceEEEEe
Confidence 1257999988754321 1 11221 123455666677778776544
No 475
>COG1023 Gnd Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=69.74 E-value=26 Score=29.15 Aligned_cols=104 Identities=12% Similarity=0.145 Sum_probs=59.6
Q ss_pred HHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCeeEEEecccccccChhHHHHHHHHHHhcc
Q 024008 124 VAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFL 203 (274)
Q Consensus 124 ~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~~~~~~~~~~~~~~l~~l~~~L 203 (274)
..+.+.+..+++.|+++.+++.++..-... ..-...-+..+.++ -.||..-+-. +...++++.+...|
T Consensus 17 ~rl~~~ghdvV~yD~n~~av~~~~~~ga~~-----a~sl~el~~~L~~p---r~vWlMvPag----~it~~vi~~la~~L 84 (300)
T COG1023 17 RRLLDGGHDVVGYDVNQTAVEELKDEGATG-----AASLDELVAKLSAP---RIVWLMVPAG----DITDAVIDDLAPLL 84 (300)
T ss_pred HHHHhCCCeEEEEcCCHHHHHHHHhcCCcc-----ccCHHHHHHhcCCC---cEEEEEccCC----CchHHHHHHHHhhc
Confidence 344558899999999999998887654111 00000011112222 4555432222 23467889999999
Q ss_pred cCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcEEEEee
Q 024008 204 KPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAISIVD 248 (274)
Q Consensus 204 ~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gf~~~~~~~ 248 (274)
.+|-.++=.. +..|. +.-+-.+.+++.|+..+++-.
T Consensus 85 ~~GDivIDGG--------NS~y~-Ds~rr~~~l~~kgi~flD~GT 120 (300)
T COG1023 85 SAGDIVIDGG--------NSNYK-DSLRRAKLLAEKGIHFLDVGT 120 (300)
T ss_pred CCCCEEEECC--------ccchH-HHHHHHHHHHhcCCeEEeccC
Confidence 9887665321 11222 344445667777988877654
No 476
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=69.72 E-value=45 Score=28.22 Aligned_cols=115 Identities=14% Similarity=0.089 Sum_probs=61.7
Q ss_pred CCCCeEEEEcCCcchhHHHh----hCCC-CeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCeeEEEec
Q 024008 107 LPKGRALVPGCGTGYDVVAM----ASPE-RYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDY 181 (274)
Q Consensus 107 ~~~~~vLDiG~G~G~~~~~l----~~~~-~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~ 181 (274)
..+.+||=+|+| ..+..+ +..| .+|+.++-+.+..+...+...... .+.+ ..+.. ..-..+|+|+..
T Consensus 121 ~~~k~vlVlGaG--g~a~ai~~aL~~~g~~~V~v~~R~~~~a~~l~~~~~~~~---~~~~-~~~~~--~~~~~~DivIna 192 (278)
T PRK00258 121 LKGKRILILGAG--GAARAVILPLLDLGVAEITIVNRTVERAEELAKLFGALG---KAEL-DLELQ--EELADFDLIINA 192 (278)
T ss_pred CCCCEEEEEcCc--HHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhhhcc---ceee-cccch--hccccCCEEEEC
Confidence 456789999885 444333 3367 689999999877666655543221 1233 11211 112568999987
Q ss_pred ccccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcE
Q 024008 182 TFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQA 243 (274)
Q Consensus 182 ~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gf~~ 243 (274)
-.....+......+ -...++++..++=..+.+ ....+.+.+++.|..+
T Consensus 193 Tp~g~~~~~~~~~~---~~~~l~~~~~v~DivY~P-----------~~T~ll~~A~~~G~~~ 240 (278)
T PRK00258 193 TSAGMSGELPLPPL---PLSLLRPGTIVYDMIYGP-----------LPTPFLAWAKAQGART 240 (278)
T ss_pred CcCCCCCCCCCCCC---CHHHcCCCCEEEEeecCC-----------CCCHHHHHHHHCcCee
Confidence 55443221000000 113456666555444433 2346677778878754
No 477
>cd08263 Zn_ADH10 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subu
Probab=69.70 E-value=11 Score=32.98 Aligned_cols=92 Identities=17% Similarity=0.252 Sum_probs=53.1
Q ss_pred CCCCeEEEEcCC-cchhHHHhhC-CCCe-EEEEeCChHHHHHHHHHhhcCCCCcceEEEEc---ccC----CCCCCCCee
Q 024008 107 LPKGRALVPGCG-TGYDVVAMAS-PERY-VVGLEISDIAIKKAEELSSSLPNAKFVSFLKA---DFF----TWCPTELFD 176 (274)
Q Consensus 107 ~~~~~vLDiG~G-~G~~~~~l~~-~~~~-v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~---d~~----~~~~~~~fD 176 (274)
.++.+||-.|+| .|..+..+++ .|.+ +++++.+++..+.+++.- . ..++.. +.. .......+|
T Consensus 186 ~~g~~VlI~g~g~vG~~~~~lak~~G~~~vi~~~~s~~~~~~~~~~g----~---~~v~~~~~~~~~~~l~~~~~~~~~d 258 (367)
T cd08263 186 RPGETVAVIGVGGVGSSAIQLAKAFGASPIIAVDVRDEKLAKAKELG----A---THTVNAAKEDAVAAIREITGGRGVD 258 (367)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHhC----C---ceEecCCcccHHHHHHHHhCCCCCC
Confidence 345677766653 3444444555 6776 999998888877775431 1 111111 111 122345689
Q ss_pred EEEecccccccChhHHHHHHHHHHhcccCCcEEEEEE
Q 024008 177 LIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLM 213 (274)
Q Consensus 177 ~v~~~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~ 213 (274)
+|+.. +... ..+..+.++|+++|.++...
T Consensus 259 ~vld~-----vg~~---~~~~~~~~~l~~~G~~v~~g 287 (367)
T cd08263 259 VVVEA-----LGKP---ETFKLALDVVRDGGRAVVVG 287 (367)
T ss_pred EEEEe-----CCCH---HHHHHHHHHHhcCCEEEEEc
Confidence 99842 1111 24577889999999988764
No 478
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=69.65 E-value=61 Score=26.52 Aligned_cols=64 Identities=9% Similarity=0.019 Sum_probs=42.5
Q ss_pred eEEEEcCCcc--hhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCC-----CCCCCeeEEEe
Q 024008 111 RALVPGCGTG--YDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW-----CPTELFDLIFD 180 (274)
Q Consensus 111 ~vLDiG~G~G--~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-----~~~~~fD~v~~ 180 (274)
+++=+|||.= ..+..|.+.|..|+.+|.+++.++...... ..+..+.+|..+. ..-..+|++++
T Consensus 2 ~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~~~~~~~~~~~------~~~~~v~gd~t~~~~L~~agi~~aD~vva 72 (225)
T COG0569 2 KIIIIGAGRVGRSVARELSEEGHNVVLIDRDEERVEEFLADE------LDTHVVIGDATDEDVLEEAGIDDADAVVA 72 (225)
T ss_pred EEEEECCcHHHHHHHHHHHhCCCceEEEEcCHHHHHHHhhhh------cceEEEEecCCCHHHHHhcCCCcCCEEEE
Confidence 4666777652 223344458899999999999887743311 1377888888871 22357899885
No 479
>COG4121 Uncharacterized conserved protein [Function unknown]
Probab=69.43 E-value=17 Score=30.34 Aligned_cols=123 Identities=19% Similarity=0.158 Sum_probs=77.8
Q ss_pred CeEEEEcCCcchhHHHhhC-----C------C---CeEEEEeCChHHHHHHH-------------HHhhcCC--------
Q 024008 110 GRALVPGCGTGYDVVAMAS-----P------E---RYVVGLEISDIAIKKAE-------------ELSSSLP-------- 154 (274)
Q Consensus 110 ~~vLDiG~G~G~~~~~l~~-----~------~---~~v~~iD~s~~~~~~a~-------------~~~~~~~-------- 154 (274)
..|+|+|-|+|.+...+-+ . + .++++++.+|..-.... ...+...
T Consensus 60 ~~i~E~gfgtglnfl~~~~~~~~~~~~~~~~~~~~l~~~S~e~~P~~~~~l~~l~~~pel~~~~~~l~~~~~~~~~~~~r 139 (252)
T COG4121 60 LQILEIGFGTGLNFLTAHLAIGDARQAKLEVVLLDLKFDSIELDPFSPPKCPALWTVPFLCHLADALAPTGPLATYGCAA 139 (252)
T ss_pred eeehhhhcccchhHHHHHhhhhhhhhccccccccccceEEEEeCCCChhhhHHHhhhhhHHHHHHHHhhccCcccchhHH
Confidence 5799999999988765543 1 1 26778887653322221 1111110
Q ss_pred --C--CcceEEEEcccCCCCC--CC---CeeEEEecccccccChhH-HHHHHHHHHhcccCCcEEEEEEccCCCCCCCCC
Q 024008 155 --N--AKFVSFLKADFFTWCP--TE---LFDLIFDYTFFCAIEPEM-RAAWAQKIKDFLKPDGELITLMFPISDHVGGPP 224 (274)
Q Consensus 155 --~--~~~v~~~~~d~~~~~~--~~---~fD~v~~~~~~~~~~~~~-~~~~l~~l~~~L~~gG~l~~~~~~~~~~~~~~~ 224 (274)
. ..+.+...+|+....+ +. ++|+.+....-...++++ ...++..+.+..++||.+....
T Consensus 140 ~~~~g~~~l~l~~gd~~~~~p~~~~~~~~~dAwflDgFsP~kNP~mW~~e~l~~~a~~~~~~~~l~t~s----------- 208 (252)
T COG4121 140 AVRHGLLLLGLVIGDAGDGIPPVPRRRPGTDAWFLDGFRPVKNPEMWEDELLNLMARIPYRDPTLATFA----------- 208 (252)
T ss_pred hhhcchheeeeeeeehhhcCCcccccccCccEEecCCccccCChhhccHHHHHHHHhhcCCCCceechH-----------
Confidence 0 1245677788866222 23 688888544333334432 2578899999999999987654
Q ss_pred cccCHHHHHHHHhcCCCcEEEE
Q 024008 225 YKVSVSDYEEVLQPMGFQAISI 246 (274)
Q Consensus 225 ~~~~~~~~~~~~~~~Gf~~~~~ 246 (274)
+..-+..-++.+||++...
T Consensus 209 ---sA~~vRr~L~~aGF~v~~r 227 (252)
T COG4121 209 ---AAIAVRRRLEQAGFTVEKR 227 (252)
T ss_pred ---HHHHHHHHHHHcCceeeec
Confidence 4667888899999998776
No 480
>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=69.42 E-value=49 Score=28.30 Aligned_cols=112 Identities=15% Similarity=0.123 Sum_probs=60.1
Q ss_pred EEEEcCCc--chhHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCC-CCCCeeEEEecccccccC
Q 024008 112 ALVPGCGT--GYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC-PTELFDLIFDYTFFCAIE 188 (274)
Q Consensus 112 vLDiG~G~--G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-~~~~fD~v~~~~~~~~~~ 188 (274)
|-=||+|. ...+..+++.+..+++.|.+++..+.+++ .+ +. ...+..+.. .....|+|+..-. +
T Consensus 3 Ig~IGlG~mG~~mA~~L~~~g~~v~v~dr~~~~~~~~~~----~g----~~-~~~s~~~~~~~~~~advVi~~vp----~ 69 (299)
T PRK12490 3 LGLIGLGKMGGNMAERLREDGHEVVGYDVNQEAVDVAGK----LG----IT-ARHSLEELVSKLEAPRTIWVMVP----A 69 (299)
T ss_pred EEEEcccHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHH----CC----Ce-ecCCHHHHHHhCCCCCEEEEEec----C
Confidence 44566654 23344555688899999999887766543 11 11 111222111 1112477764321 2
Q ss_pred hhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcEEE
Q 024008 189 PEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAIS 245 (274)
Q Consensus 189 ~~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gf~~~~ 245 (274)
++....++..+...+++|..++-.. .. ...+..++.+.+++.|...++
T Consensus 70 ~~~~~~v~~~i~~~l~~g~ivid~s-t~--------~~~~~~~~~~~~~~~g~~~vd 117 (299)
T PRK12490 70 GEVTESVIKDLYPLLSPGDIVVDGG-NS--------RYKDDLRRAEELAERGIHYVD 117 (299)
T ss_pred chHHHHHHHHHhccCCCCCEEEECC-CC--------CchhHHHHHHHHHHcCCeEEe
Confidence 2355667777877787776443321 11 112566777788888865433
No 481
>PRK09242 tropinone reductase; Provisional
Probab=69.29 E-value=28 Score=28.61 Aligned_cols=77 Identities=14% Similarity=-0.001 Sum_probs=49.8
Q ss_pred CCCeEEEEcCCcchh---HHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCC-----------CCC
Q 024008 108 PKGRALVPGCGTGYD---VVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC-----------PTE 173 (274)
Q Consensus 108 ~~~~vLDiG~G~G~~---~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-----------~~~ 173 (274)
.++++|-.|++.|.- +..+++.|++|+.++.+++..+.....+....-..++.++.+|+.+.. ..+
T Consensus 8 ~~k~~lItGa~~gIG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g 87 (257)
T PRK09242 8 DGQTALITGASKGIGLAIAREFLGLGADVLIVARDADALAQARDELAEEFPEREVHGLAADVSDDEDRRAILDWVEDHWD 87 (257)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhCCCCeEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence 456888888855422 334455899999999888777666555433211246888899987621 124
Q ss_pred CeeEEEecccc
Q 024008 174 LFDLIFDYTFF 184 (274)
Q Consensus 174 ~fD~v~~~~~~ 184 (274)
++|.++.+...
T Consensus 88 ~id~li~~ag~ 98 (257)
T PRK09242 88 GLHILVNNAGG 98 (257)
T ss_pred CCCEEEECCCC
Confidence 68998876543
No 482
>PLN02662 cinnamyl-alcohol dehydrogenase family protein
Probab=69.27 E-value=14 Score=31.59 Aligned_cols=74 Identities=16% Similarity=0.084 Sum_probs=43.0
Q ss_pred CCeEEEEcCCcchhHHHhhC----CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCC----CCCeeEEEe
Q 024008 109 KGRALVPGCGTGYDVVAMAS----PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP----TELFDLIFD 180 (274)
Q Consensus 109 ~~~vLDiG~G~G~~~~~l~~----~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~----~~~fD~v~~ 180 (274)
+++||=.|+ +|..+..+++ .|.+|++++.++.............+..++++++.+|+.+... -..+|.|+.
T Consensus 4 ~~~ilVtGa-tGfIG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~Vih 82 (322)
T PLN02662 4 GKVVCVTGA-SGYIASWLVKLLLQRGYTVKATVRDPNDPKKTEHLLALDGAKERLHLFKANLLEEGSFDSVVDGCEGVFH 82 (322)
T ss_pred CCEEEEECC-hHHHHHHHHHHHHHCCCEEEEEEcCCCchhhHHHHHhccCCCCceEEEeccccCcchHHHHHcCCCEEEE
Confidence 457777765 5666655544 7889998887654322222211111112468999999986321 135788876
Q ss_pred ccc
Q 024008 181 YTF 183 (274)
Q Consensus 181 ~~~ 183 (274)
...
T Consensus 83 ~A~ 85 (322)
T PLN02662 83 TAS 85 (322)
T ss_pred eCC
Confidence 543
No 483
>PRK09186 flagellin modification protein A; Provisional
Probab=69.19 E-value=29 Score=28.38 Aligned_cols=75 Identities=17% Similarity=0.125 Sum_probs=46.8
Q ss_pred CCCeEEEEcCCcchh---HHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCC-----------CC
Q 024008 108 PKGRALVPGCGTGYD---VVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP-----------TE 173 (274)
Q Consensus 108 ~~~~vLDiG~G~G~~---~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~-----------~~ 173 (274)
.+++||=.|++.|.- +..|++.|+++++++.+++.++.+...+........+.++.+|+.+... -+
T Consensus 3 ~~k~vlItGas~giG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~~~~ 82 (256)
T PRK09186 3 KGKTILITGAGGLIGSALVKAILEAGGIVIAADIDKEALNELLESLGKEFKSKKLSLVELDITDQESLEEFLSKSAEKYG 82 (256)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEecChHHHHHHHHHHHhhcCCCceeEEEecCCCHHHHHHHHHHHHHHcC
Confidence 356788888754321 3344558899999998887776665554322112346777889876210 13
Q ss_pred CeeEEEecc
Q 024008 174 LFDLIFDYT 182 (274)
Q Consensus 174 ~fD~v~~~~ 182 (274)
+.|+++.+.
T Consensus 83 ~id~vi~~A 91 (256)
T PRK09186 83 KIDGAVNCA 91 (256)
T ss_pred CccEEEECC
Confidence 479998765
No 484
>PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional
Probab=69.10 E-value=34 Score=27.87 Aligned_cols=75 Identities=15% Similarity=0.046 Sum_probs=47.1
Q ss_pred CCCCeEEEEcCCcchhHH----HhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCC------------
Q 024008 107 LPKGRALVPGCGTGYDVV----AMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC------------ 170 (274)
Q Consensus 107 ~~~~~vLDiG~G~G~~~~----~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~------------ 170 (274)
.++++||=.|+. |..+. .|++.|++|++++.++.........+...+ ..++.++..|+....
T Consensus 10 ~~~k~vlItG~~-g~iG~~la~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~~-~~~~~~~~~d~~~~~~~~~~~~~~~~~ 87 (247)
T PRK08945 10 LKDRIILVTGAG-DGIGREAALTYARHGATVILLGRTEEKLEAVYDEIEAAG-GPQPAIIPLDLLTATPQNYQQLADTIE 87 (247)
T ss_pred cCCCEEEEeCCC-chHHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHhcC-CCCceEEEecccCCCHHHHHHHHHHHH
Confidence 356788888864 44444 344478899999998876666555444332 135677777774211
Q ss_pred -CCCCeeEEEeccc
Q 024008 171 -PTELFDLIFDYTF 183 (274)
Q Consensus 171 -~~~~fD~v~~~~~ 183 (274)
..++.|.|+.+..
T Consensus 88 ~~~~~id~vi~~Ag 101 (247)
T PRK08945 88 EQFGRLDGVLHNAG 101 (247)
T ss_pred HHhCCCCEEEECCc
Confidence 1146899987653
No 485
>PRK06194 hypothetical protein; Provisional
Probab=69.00 E-value=25 Score=29.44 Aligned_cols=73 Identities=14% Similarity=-0.001 Sum_probs=47.4
Q ss_pred CCeEEEEcCCcchhHH----HhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCC-----------CCC
Q 024008 109 KGRALVPGCGTGYDVV----AMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC-----------PTE 173 (274)
Q Consensus 109 ~~~vLDiG~G~G~~~~----~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-----------~~~ 173 (274)
++++|=.|++ |..+. .|++.|++|+.+|.+++.+..........+ .++.++.+|+.+.. ..+
T Consensus 6 ~k~vlVtGas-ggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~d~~~~~~~~~~~~~~~g 82 (287)
T PRK06194 6 GKVAVITGAA-SGFGLAFARIGAALGMKLVLADVQQDALDRAVAELRAQG--AEVLGVRTDVSDAAQVEALADAALERFG 82 (287)
T ss_pred CCEEEEeCCc-cHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHhcC--CeEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence 4678867654 44433 444589999999998776665555443332 35788999987621 013
Q ss_pred CeeEEEecccc
Q 024008 174 LFDLIFDYTFF 184 (274)
Q Consensus 174 ~fD~v~~~~~~ 184 (274)
+.|+|+.+...
T Consensus 83 ~id~vi~~Ag~ 93 (287)
T PRK06194 83 AVHLLFNNAGV 93 (287)
T ss_pred CCCEEEECCCC
Confidence 57999987654
No 486
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=68.99 E-value=19 Score=31.61 Aligned_cols=92 Identities=24% Similarity=0.154 Sum_probs=50.2
Q ss_pred CCCCeEEEEcCC-cchhHHHhhC-CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEE-c---ccCCCCCCCCeeEEEe
Q 024008 107 LPKGRALVPGCG-TGYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLK-A---DFFTWCPTELFDLIFD 180 (274)
Q Consensus 107 ~~~~~vLDiG~G-~G~~~~~l~~-~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~-~---d~~~~~~~~~fD~v~~ 180 (274)
.++.+||-.|+| .|..+..+++ .|+++++++.+++....+.+.. +. ..++. . ++.... +.+|+|+.
T Consensus 182 ~~g~~VlV~G~G~vG~~avq~Ak~~Ga~vi~~~~~~~~~~~~~~~~---Ga---~~vi~~~~~~~~~~~~--~~~D~vid 253 (360)
T PLN02586 182 EPGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISSSSNKEDEAINRL---GA---DSFLVSTDPEKMKAAI--GTMDYIID 253 (360)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCcchhhhHHHhC---CC---cEEEcCCCHHHHHhhc--CCCCEEEE
Confidence 356788878774 2334445555 7888988887765433332222 11 01111 0 111111 24788884
Q ss_pred cccccccChhHHHHHHHHHHhcccCCcEEEEEEc
Q 024008 181 YTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMF 214 (274)
Q Consensus 181 ~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~ 214 (274)
.-. . ...+....++|++||.++....
T Consensus 254 ~~g----~----~~~~~~~~~~l~~~G~iv~vG~ 279 (360)
T PLN02586 254 TVS----A----VHALGPLLGLLKVNGKLITLGL 279 (360)
T ss_pred CCC----C----HHHHHHHHHHhcCCcEEEEeCC
Confidence 211 1 1245678889999999887643
No 487
>PRK08703 short chain dehydrogenase; Provisional
Probab=68.87 E-value=37 Score=27.54 Aligned_cols=74 Identities=15% Similarity=0.045 Sum_probs=45.0
Q ss_pred CCCeEEEEcCCcchhHH----HhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCC-------------
Q 024008 108 PKGRALVPGCGTGYDVV----AMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC------------- 170 (274)
Q Consensus 108 ~~~~vLDiG~G~G~~~~----~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~------------- 170 (274)
+++++|-.||+.| .+. .+++.|.+|++++-++...+.....+...+. ..+.++..|+.+..
T Consensus 5 ~~k~vlItG~sgg-iG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~~~-~~~~~~~~D~~~~~~~~~~~~~~~i~~ 82 (239)
T PRK08703 5 SDKTILVTGASQG-LGEQVAKAYAAAGATVILVARHQKKLEKVYDAIVEAGH-PEPFAIRFDLMSAEEKEFEQFAATIAE 82 (239)
T ss_pred CCCEEEEECCCCc-HHHHHHHHHHHcCCEEEEEeCChHHHHHHHHHHHHcCC-CCcceEEeeecccchHHHHHHHHHHHH
Confidence 4578899996444 433 4445889999999988776655554433221 23556666664311
Q ss_pred -CCCCeeEEEeccc
Q 024008 171 -PTELFDLIFDYTF 183 (274)
Q Consensus 171 -~~~~fD~v~~~~~ 183 (274)
..+..|.|+.+..
T Consensus 83 ~~~~~id~vi~~ag 96 (239)
T PRK08703 83 ATQGKLDGIVHCAG 96 (239)
T ss_pred HhCCCCCEEEEecc
Confidence 0146798887654
No 488
>PRK07478 short chain dehydrogenase; Provisional
Probab=68.84 E-value=30 Score=28.40 Aligned_cols=75 Identities=13% Similarity=0.003 Sum_probs=49.7
Q ss_pred CCCeEEEEcCCcch---hHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCC-----------CCC
Q 024008 108 PKGRALVPGCGTGY---DVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC-----------PTE 173 (274)
Q Consensus 108 ~~~~vLDiG~G~G~---~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-----------~~~ 173 (274)
.++++|=.|++.|. .+..+++.|++|+.++.+++.++.....+...+ .++.++.+|+.+.. ..+
T Consensus 5 ~~k~~lItGas~giG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 82 (254)
T PRK07478 5 NGKVAIITGASSGIGRAAAKLFAREGAKVVVGARRQAELDQLVAEIRAEG--GEAVALAGDVRDEAYAKALVALAVERFG 82 (254)
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEcCCCCHHHHHHHHHHHHHhcC
Confidence 35678877776542 234555589999999998877776665554433 35788889987621 114
Q ss_pred CeeEEEecccc
Q 024008 174 LFDLIFDYTFF 184 (274)
Q Consensus 174 ~fD~v~~~~~~ 184 (274)
+.|+++.+...
T Consensus 83 ~id~li~~ag~ 93 (254)
T PRK07478 83 GLDIAFNNAGT 93 (254)
T ss_pred CCCEEEECCCC
Confidence 68998877543
No 489
>PRK07454 short chain dehydrogenase; Provisional
Probab=68.60 E-value=30 Score=28.07 Aligned_cols=73 Identities=15% Similarity=-0.025 Sum_probs=47.4
Q ss_pred CCeEEEEcCCcchhHH----HhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCC-----------CC
Q 024008 109 KGRALVPGCGTGYDVV----AMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP-----------TE 173 (274)
Q Consensus 109 ~~~vLDiG~G~G~~~~----~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~-----------~~ 173 (274)
.+++|-.|+ +|..+. .+++.|.+|++++.++.......+.....+ .++.++.+|+.+... .+
T Consensus 6 ~k~vlItG~-sg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 82 (241)
T PRK07454 6 MPRALITGA-SSGIGKATALAFAKAGWDLALVARSQDALEALAAELRSTG--VKAAAYSIDLSNPEAIAPGIAELLEQFG 82 (241)
T ss_pred CCEEEEeCC-CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhCC--CcEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 357788885 455444 444588999999998876655554443322 468889999976211 13
Q ss_pred CeeEEEecccc
Q 024008 174 LFDLIFDYTFF 184 (274)
Q Consensus 174 ~fD~v~~~~~~ 184 (274)
+.|+++.+...
T Consensus 83 ~id~lv~~ag~ 93 (241)
T PRK07454 83 CPDVLINNAGM 93 (241)
T ss_pred CCCEEEECCCc
Confidence 57999876543
No 490
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=68.47 E-value=14 Score=31.34 Aligned_cols=88 Identities=18% Similarity=0.049 Sum_probs=48.2
Q ss_pred CeEEEEcCCc--chhHHHhhCCCC--eEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCeeEEEeccccc
Q 024008 110 GRALVPGCGT--GYDVVAMASPER--YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFC 185 (274)
Q Consensus 110 ~~vLDiG~G~--G~~~~~l~~~~~--~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~~~~ 185 (274)
.+|+=+|.|- |.++..+.+.|. .+++.|.+...+..+.+.- +.....+-.........|+|+..-.
T Consensus 4 ~~v~IvG~GliG~s~a~~l~~~g~~v~i~g~d~~~~~~~~a~~lg--------v~d~~~~~~~~~~~~~aD~VivavP-- 73 (279)
T COG0287 4 MKVGIVGLGLMGGSLARALKEAGLVVRIIGRDRSAATLKAALELG--------VIDELTVAGLAEAAAEADLVIVAVP-- 73 (279)
T ss_pred cEEEEECCchHHHHHHHHHHHcCCeEEEEeecCcHHHHHHHhhcC--------cccccccchhhhhcccCCEEEEecc--
Confidence 4566776543 233344444666 5688888887777775432 1111111100112244688885433
Q ss_pred ccChhHHHHHHHHHHhcccCCcEEE
Q 024008 186 AIEPEMRAAWAQKIKDFLKPDGELI 210 (274)
Q Consensus 186 ~~~~~~~~~~l~~l~~~L~~gG~l~ 210 (274)
-.....+++++...|++|..+.
T Consensus 74 ---i~~~~~~l~~l~~~l~~g~iv~ 95 (279)
T COG0287 74 ---IEATEEVLKELAPHLKKGAIVT 95 (279)
T ss_pred ---HHHHHHHHHHhcccCCCCCEEE
Confidence 3445667788887777776654
No 491
>PF11253 DUF3052: Protein of unknown function (DUF3052); InterPro: IPR021412 This family of proteins with unknown function appears to be restricted to Actinobacteria.
Probab=68.25 E-value=46 Score=24.59 Aligned_cols=71 Identities=17% Similarity=0.126 Sum_probs=50.5
Q ss_pred CCCeeEEEecccccccChhHHHHHHHHHHhcccCCcEEEEEEccCCCCCCCCCcccCHHHHHHHHhcCCCcEEEEeecc
Q 024008 172 TELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYKVSVSDYEEVLQPMGFQAISIVDNK 250 (274)
Q Consensus 172 ~~~fD~v~~~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gf~~~~~~~~~ 250 (274)
.+-+|.|+..+-- .+.++...+-.+.+.|..+|.|.+..... +.+-+.++.++.+....+|+...+.....
T Consensus 43 ddvvD~vllWwR~---~DgDL~D~LvDa~~~L~d~G~IWvltPK~-----gr~g~V~~~~I~eaA~taGL~~t~~~~v~ 113 (127)
T PF11253_consen 43 DDVVDVVLLWWRD---DDGDLVDALVDARTNLADDGVIWVLTPKA-----GRPGHVEPSDIREAAPTAGLVQTKSCAVG 113 (127)
T ss_pred cccccEEEEEEEC---CcchHHHHHHHHHhhhcCCCEEEEEccCC-----CCCCCCCHHHHHHHHhhcCCeeeeeeccC
Confidence 4567888743332 23456667777889999999888877443 22345689999999999999887776543
No 492
>PRK07024 short chain dehydrogenase; Provisional
Probab=68.21 E-value=28 Score=28.68 Aligned_cols=71 Identities=13% Similarity=-0.044 Sum_probs=46.7
Q ss_pred CeEEEEcCCcchhH----HHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCC-----------CCCC
Q 024008 110 GRALVPGCGTGYDV----VAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC-----------PTEL 174 (274)
Q Consensus 110 ~~vLDiG~G~G~~~----~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-----------~~~~ 174 (274)
++||=.|++. ..+ ..|++.|++|+.++.+++.++...+..... .++.++.+|+.+.. ..+.
T Consensus 3 ~~vlItGas~-gIG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~---~~~~~~~~Dl~~~~~i~~~~~~~~~~~g~ 78 (257)
T PRK07024 3 LKVFITGASS-GIGQALAREYARQGATLGLVARRTDALQAFAARLPKA---ARVSVYAADVRDADALAAAAADFIAAHGL 78 (257)
T ss_pred CEEEEEcCCc-HHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhcccC---CeeEEEEcCCCCHHHHHHHHHHHHHhCCC
Confidence 4677777644 443 344458899999999887776655544322 26889999998621 1135
Q ss_pred eeEEEecccc
Q 024008 175 FDLIFDYTFF 184 (274)
Q Consensus 175 fD~v~~~~~~ 184 (274)
.|+++.+...
T Consensus 79 id~lv~~ag~ 88 (257)
T PRK07024 79 PDVVIANAGI 88 (257)
T ss_pred CCEEEECCCc
Confidence 7999987543
No 493
>PRK07326 short chain dehydrogenase; Provisional
Probab=68.19 E-value=27 Score=28.20 Aligned_cols=71 Identities=15% Similarity=-0.041 Sum_probs=46.5
Q ss_pred CCeEEEEcCCcchhHHHh----hCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCC-----------CCC
Q 024008 109 KGRALVPGCGTGYDVVAM----ASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC-----------PTE 173 (274)
Q Consensus 109 ~~~vLDiG~G~G~~~~~l----~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-----------~~~ 173 (274)
+.+||-.|+ +|..+..+ ++.|.+|++++.++.......+.+... .++.++.+|+.+.. ..+
T Consensus 6 ~~~ilItGa-tg~iG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~---~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 81 (237)
T PRK07326 6 GKVALITGG-SKGIGFAIAEALLAEGYKVAITARDQKELEEAAAELNNK---GNVLGLAADVRDEADVQRAVDAIVAAFG 81 (237)
T ss_pred CCEEEEECC-CCcHHHHHHHHHHHCCCEEEEeeCCHHHHHHHHHHHhcc---CcEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 467888885 55555444 347889999998887666555544332 35888899987521 013
Q ss_pred CeeEEEeccc
Q 024008 174 LFDLIFDYTF 183 (274)
Q Consensus 174 ~fD~v~~~~~ 183 (274)
.+|+|+.+..
T Consensus 82 ~~d~vi~~ag 91 (237)
T PRK07326 82 GLDVLIANAG 91 (237)
T ss_pred CCCEEEECCC
Confidence 6898887643
No 494
>PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated
Probab=67.95 E-value=30 Score=28.44 Aligned_cols=75 Identities=17% Similarity=0.154 Sum_probs=49.3
Q ss_pred CCCCeEEEEcCCcchh---HHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCC-----------C
Q 024008 107 LPKGRALVPGCGTGYD---VVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP-----------T 172 (274)
Q Consensus 107 ~~~~~vLDiG~G~G~~---~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~-----------~ 172 (274)
..+++||-.|++.|.- +..+++.|++++.++.+..............+ .++.++.+|+.+... .
T Consensus 9 l~~k~vlVtG~s~gIG~~la~~l~~~G~~vv~~~r~~~~~~~~~~~l~~~~--~~~~~~~~D~~~~~~i~~~~~~~~~~~ 86 (255)
T PRK06113 9 LDGKCAIITGAGAGIGKEIAITFATAGASVVVSDINADAANHVVDEIQQLG--GQAFACRCDITSEQELSALADFALSKL 86 (255)
T ss_pred cCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHHHc
Confidence 3467899999766532 33455589999999988776665554443332 357788899886211 1
Q ss_pred CCeeEEEeccc
Q 024008 173 ELFDLIFDYTF 183 (274)
Q Consensus 173 ~~fD~v~~~~~ 183 (274)
+++|.++.+..
T Consensus 87 ~~~d~li~~ag 97 (255)
T PRK06113 87 GKVDILVNNAG 97 (255)
T ss_pred CCCCEEEECCC
Confidence 46898887654
No 495
>PRK05866 short chain dehydrogenase; Provisional
Probab=67.88 E-value=28 Score=29.58 Aligned_cols=74 Identities=12% Similarity=0.084 Sum_probs=48.7
Q ss_pred CCCeEEEEcCCcchh---HHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCC-----------CCC
Q 024008 108 PKGRALVPGCGTGYD---VVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC-----------PTE 173 (274)
Q Consensus 108 ~~~~vLDiG~G~G~~---~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-----------~~~ 173 (274)
.+.+||=.|++.|.- +..+++.|++|+.++.+++.++...+.....+ .++.++.+|+.+.. .-+
T Consensus 39 ~~k~vlItGasggIG~~la~~La~~G~~Vi~~~R~~~~l~~~~~~l~~~~--~~~~~~~~Dl~d~~~v~~~~~~~~~~~g 116 (293)
T PRK05866 39 TGKRILLTGASSGIGEAAAEQFARRGATVVAVARREDLLDAVADRITRAG--GDAMAVPCDLSDLDAVDALVADVEKRIG 116 (293)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 346788888755432 23444588999999999877766655554332 35778889987621 124
Q ss_pred CeeEEEeccc
Q 024008 174 LFDLIFDYTF 183 (274)
Q Consensus 174 ~fD~v~~~~~ 183 (274)
..|+++.+..
T Consensus 117 ~id~li~~AG 126 (293)
T PRK05866 117 GVDILINNAG 126 (293)
T ss_pred CCCEEEECCC
Confidence 6899997754
No 496
>COG2130 Putative NADP-dependent oxidoreductases [General function prediction only]
Probab=67.61 E-value=37 Score=29.26 Aligned_cols=84 Identities=14% Similarity=0.042 Sum_probs=59.7
Q ss_pred CcchhHHHhhC-CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC---CCCCCCeeEEEecccccccChhHHH
Q 024008 118 GTGYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT---WCPTELFDLIFDYTFFCAIEPEMRA 193 (274)
Q Consensus 118 G~G~~~~~l~~-~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~---~~~~~~fD~v~~~~~~~~~~~~~~~ 193 (274)
+.|....++++ .|++|+|+=-+++-++.+++-+ +.+.-+++...|+.+ ...++..|+++-+ .- .
T Consensus 162 aVGsvvgQiAKlkG~rVVGiaGg~eK~~~l~~~l---GfD~~idyk~~d~~~~L~~a~P~GIDvyfeN-----VG----g 229 (340)
T COG2130 162 AVGSVVGQIAKLKGCRVVGIAGGAEKCDFLTEEL---GFDAGIDYKAEDFAQALKEACPKGIDVYFEN-----VG----G 229 (340)
T ss_pred ccchHHHHHHHhhCCeEEEecCCHHHHHHHHHhc---CCceeeecCcccHHHHHHHHCCCCeEEEEEc-----CC----c
Confidence 45677788888 8999999999999888887644 333446666667765 2234678988743 22 2
Q ss_pred HHHHHHHhcccCCcEEEEEE
Q 024008 194 AWAQKIKDFLKPDGELITLM 213 (274)
Q Consensus 194 ~~l~~l~~~L~~gG~l~~~~ 213 (274)
.+++.+...|+..+++.++.
T Consensus 230 ~v~DAv~~~ln~~aRi~~CG 249 (340)
T COG2130 230 EVLDAVLPLLNLFARIPVCG 249 (340)
T ss_pred hHHHHHHHhhccccceeeee
Confidence 35677888888999988755
No 497
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=67.25 E-value=10 Score=25.99 Aligned_cols=80 Identities=16% Similarity=0.073 Sum_probs=48.0
Q ss_pred CcchhHHHhhC----CC---CeEE-EEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCCCCCCeeEEEecccccccCh
Q 024008 118 GTGYDVVAMAS----PE---RYVV-GLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFCAIEP 189 (274)
Q Consensus 118 G~G~~~~~l~~----~~---~~v~-~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~~~~~~~~ 189 (274)
|.|..+..+++ .+ .+++ +.+.+++.....++... +.+...+..+.. ...|+|+.. +++
T Consensus 6 G~G~mg~al~~~l~~~g~~~~~v~~~~~r~~~~~~~~~~~~~-------~~~~~~~~~~~~--~~advvila-----v~p 71 (96)
T PF03807_consen 6 GAGNMGSALARGLLASGIKPHEVIIVSSRSPEKAAELAKEYG-------VQATADDNEEAA--QEADVVILA-----VKP 71 (96)
T ss_dssp STSHHHHHHHHHHHHTTS-GGEEEEEEESSHHHHHHHHHHCT-------TEEESEEHHHHH--HHTSEEEE------S-G
T ss_pred CCCHHHHHHHHHHHHCCCCceeEEeeccCcHHHHHHHHHhhc-------cccccCChHHhh--ccCCEEEEE-----ECH
Confidence 45556655554 66 6888 44999998888877653 333433333322 245888843 344
Q ss_pred hHHHHHHHHHHhcccCCcEEEEE
Q 024008 190 EMRAAWAQKIKDFLKPDGELITL 212 (274)
Q Consensus 190 ~~~~~~l~~l~~~L~~gG~l~~~ 212 (274)
.....++..+ ..+.++..++-.
T Consensus 72 ~~~~~v~~~i-~~~~~~~~vis~ 93 (96)
T PF03807_consen 72 QQLPEVLSEI-PHLLKGKLVISI 93 (96)
T ss_dssp GGHHHHHHHH-HHHHTTSEEEEE
T ss_pred HHHHHHHHHH-hhccCCCEEEEe
Confidence 5566778888 666666666543
No 498
>cd08291 ETR_like_1 2-enoyl thioester reductase (ETR) like proteins, child 1. 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordin
Probab=67.24 E-value=40 Score=28.87 Aligned_cols=93 Identities=12% Similarity=0.085 Sum_probs=52.2
Q ss_pred CCCeEEEE--c-CCcchhHHHhhC-CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC----CCCCCCeeEEE
Q 024008 108 PKGRALVP--G-CGTGYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT----WCPTELFDLIF 179 (274)
Q Consensus 108 ~~~~vLDi--G-~G~G~~~~~l~~-~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~----~~~~~~fD~v~ 179 (274)
++..+|=+ | .+.|..+..+++ .|+++++++.+++..+.+++. +...-+.....++.. ......+|+++
T Consensus 142 ~~~~vlv~~~g~g~vG~~a~q~a~~~G~~vi~~~~~~~~~~~~~~~----g~~~~i~~~~~~~~~~v~~~~~~~~~d~vi 217 (324)
T cd08291 142 EGAKAVVHTAAASALGRMLVRLCKADGIKVINIVRRKEQVDLLKKI----GAEYVLNSSDPDFLEDLKELIAKLNATIFF 217 (324)
T ss_pred CCCcEEEEccCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHc----CCcEEEECCCccHHHHHHHHhCCCCCcEEE
Confidence 44455544 3 344555566666 788999999999888888763 211111111112211 12234689888
Q ss_pred ecccccccChhHHHHHHHHHHhcccCCcEEEEEE
Q 024008 180 DYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLM 213 (274)
Q Consensus 180 ~~~~~~~~~~~~~~~~l~~l~~~L~~gG~l~~~~ 213 (274)
..- . .. ......+.++++|.++...
T Consensus 218 d~~--g---~~----~~~~~~~~l~~~G~~v~~g 242 (324)
T cd08291 218 DAV--G---GG----LTGQILLAMPYGSTLYVYG 242 (324)
T ss_pred ECC--C---cH----HHHHHHHhhCCCCEEEEEE
Confidence 421 1 11 2345677789999988765
No 499
>PRK06484 short chain dehydrogenase; Validated
Probab=67.16 E-value=89 Score=28.86 Aligned_cols=72 Identities=14% Similarity=0.035 Sum_probs=47.6
Q ss_pred CCCeEEEEcCCcch---hHHHhhCCCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCCCC-----------CCC
Q 024008 108 PKGRALVPGCGTGY---DVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC-----------PTE 173 (274)
Q Consensus 108 ~~~~vLDiG~G~G~---~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-----------~~~ 173 (274)
+++++|=.|++.|. .+..|++.|++|+.++.+++.++...+... .++.++..|+.+.. ..+
T Consensus 4 ~~k~~lITGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~-----~~~~~~~~D~~~~~~~~~~~~~~~~~~g 78 (520)
T PRK06484 4 QSRVVLVTGAAGGIGRAACQRFARAGDQVVVADRNVERARERADSLG-----PDHHALAMDVSDEAQIREGFEQLHREFG 78 (520)
T ss_pred CCeEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhC-----CceeEEEeccCCHHHHHHHHHHHHHHhC
Confidence 35678888887762 234455589999999988877665544431 34677888887621 114
Q ss_pred CeeEEEecccc
Q 024008 174 LFDLIFDYTFF 184 (274)
Q Consensus 174 ~fD~v~~~~~~ 184 (274)
+.|+++.+..+
T Consensus 79 ~iD~li~nag~ 89 (520)
T PRK06484 79 RIDVLVNNAGV 89 (520)
T ss_pred CCCEEEECCCc
Confidence 68999877543
No 500
>KOG1098 consensus Putative SAM-dependent rRNA methyltransferase SPB1 [RNA processing and modification; General function prediction only]
Probab=67.02 E-value=4.9 Score=37.74 Aligned_cols=97 Identities=15% Similarity=0.094 Sum_probs=57.6
Q ss_pred CCCeEEEEcCCcchhHHHhhC---CCCeEEEEeCChHHHHHHHHHhhcCCCCcceEEEEcccCC---------CCCCCCe
Q 024008 108 PKGRALVPGCGTGYDVVAMAS---PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT---------WCPTELF 175 (274)
Q Consensus 108 ~~~~vLDiG~G~G~~~~~l~~---~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~---------~~~~~~f 175 (274)
+...|||+||..|.++...++ .|.-|+|+|+-|- ... ++|.-.+.|+.. ....-+.
T Consensus 44 ~a~~vlDLcaAPG~W~QVA~q~~pv~slivGvDl~pi---------kp~---~~c~t~v~dIttd~cr~~l~k~l~t~~a 111 (780)
T KOG1098|consen 44 KAHVVLDLCAAPGGWLQVASQSMPVGSLIVGVDLVPI---------KPI---PNCDTLVEDITTDECRSKLRKILKTWKA 111 (780)
T ss_pred ccchheeeccCCcHHHHHHHHhCCCCceEEEeeeeec---------ccC---CccchhhhhhhHHHHHHHHHHHHHhCCC
Confidence 457899999999999987777 5668999998663 111 234444444443 1123356
Q ss_pred eEEEecccccc---cCh------hHHHHHHHHHHhcccCCcEEEEEEccC
Q 024008 176 DLIFDYTFFCA---IEP------EMRAAWAQKIKDFLKPDGELITLMFPI 216 (274)
Q Consensus 176 D~v~~~~~~~~---~~~------~~~~~~l~~l~~~L~~gG~l~~~~~~~ 216 (274)
|+|+.-++... +.. ...-..+......|+.||.++.-.|..
T Consensus 112 dvVLhDgapnVg~~w~~DA~~q~~L~l~al~LA~~~l~~~g~fvtkvfrs 161 (780)
T KOG1098|consen 112 DVVLHDGAPNVGGNWVQDAFQQACLTLRALKLATEFLAKGGTFVTKVFRS 161 (780)
T ss_pred cEEeecCCCccchhHHHHHHHhhHHHHHHHHHHHHHHHhcCccccccccC
Confidence 77775433211 110 111234566667788899877654443
Done!