BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 024009
(274 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2WOZ|A Chain A, The Novel Beta-Propeller Of The Btb-Kelch Protein Krp1
Provides The Binding Site For Lasp-1 That Is Necessary
For Pseudopodia Extension
Length = 318
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 64/273 (23%), Positives = 104/273 (38%), Gaps = 37/273 (13%)
Query: 1 MPREMAHSHLGMVTDGRYIYVVTGQYGPQCRGPT---AHTFVLDTETKKWQDLPPLPVPR 57
+ ++ +H +VT +YVV G Y + ++ F LD + +W LPPLP R
Sbjct: 41 LAEQIPRNHSSIVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSAR 100
Query: 58 YAPATQLWRGRLHVMGGSGENRYTPEVDHWSLAVKDGKPLEKEWRTEIPIPRGGPHRACV 117
+++V+ G E S+ D P+ +W +P +
Sbjct: 101 CLFGLGEVDDKIYVVAG---KDLQTEASLDSVLCYD--PVAAKWSEVKNLPIKVYGHNVI 155
Query: 118 VVDDRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYDDVYMLD-DEMKWKVLPSMPKPDSH 176
+ + +GG+ D KC+ R V++ + + WK L M P S
Sbjct: 156 SHNGMIYCLGGKTDD---------KKCTNR-------VFIYNPKKGDWKDLAPMKTPRSM 199
Query: 177 IEFAWVLVNNSIVIVGGTTEKHPTTKKMVLVGEIFQFNLNTLKWHVIGKLPYRVKTTLAG 236
F + IVI GG TE L + F+L T KW V+ + P +
Sbjct: 200 --FGVAIHKGKIVIAGGVTEDG-------LSASVEAFDLKTNKWEVMTEFPQERSSISLV 250
Query: 237 YWNGWLYFTSG--QRDKGPDDPAPRKVHGDMWR 267
G LY G + AP +V+ D+W+
Sbjct: 251 SLAGSLYAIGGFAMIQLESKEFAPTEVN-DIWK 282
>pdb|3II7|A Chain A, Crystal Structure Of The Kelch Domain Of Human Klhl7
Length = 306
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 44/186 (23%), Positives = 69/186 (37%), Gaps = 28/186 (15%)
Query: 41 DTETKKWQDLPPLPVPRYAPATQLWRGRLHVMGGSGENRYTPEVDHWSLAVKDGKPLEKE 100
DT T+ W P + R + G ++V GGS N + V + S V D P +
Sbjct: 124 DTRTESWHTKPSMLTQRCSHGMVEANGLIYVCGGSLGNNVSGRVLN-SCEVYD--PATET 180
Query: 101 WRTEIPIPRGGPHRACVVVDDRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYDDVYMLDD 160
W P+ + V V D++ +GGQ G + V Y D+ +
Sbjct: 181 WTELCPMIEARKNHGLVFVKDKIFAVGGQNG------------LGGLDNVEYYDIKL--- 225
Query: 161 EMKWKVLPSMPKPDSHIEFAWVLVNNSIVIVGGTTEKHPTTKKMVLVGEIFQFNLNTLKW 220
+WK++ MP W V VG + + +G I ++N T KW
Sbjct: 226 -NEWKMVSPMP---------WKGVTVKCAAVGSIVYVLAGFQGVGRLGHILEYNTETDKW 275
Query: 221 HVIGKL 226
K+
Sbjct: 276 VANSKV 281
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/122 (23%), Positives = 48/122 (39%), Gaps = 8/122 (6%)
Query: 11 GMVTDGRYIYVVTGQYGPQCRGPTAHTF-VLDTETKKWQDLPPLPVPRYAPATQLWRGRL 69
GMV IYV G G G ++ V D T+ W +L P+ R + ++
Sbjct: 144 GMVEANGLIYVCGGSLGNNVSGRVLNSCEVYDPATETWTELCPMIEARKNHGLVFVKDKI 203
Query: 70 HVMGGSGENRYTPEVDHWSLAVKDGKPLEKEWRTEIPIPRGGPHRACVVVDDRLLVIGGQ 129
+GG V+++ + + EW+ P+P G C V + V+ G
Sbjct: 204 FAVGGQNGLGGLDNVEYYDIKL-------NEWKMVSPMPWKGVTVKCAAVGSIVYVLAGF 256
Query: 130 EG 131
+G
Sbjct: 257 QG 258
>pdb|4ASC|A Chain A, Crystal Structure Of The Kelch Domain Of Human Kbtbd5
Length = 315
Score = 36.2 bits (82), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 46/219 (21%), Positives = 80/219 (36%), Gaps = 27/219 (12%)
Query: 19 IYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLPVPRYAPATQLWRGRLHVMGGSGEN 78
IYVV G+ D + KW + PLP Y ++V+GG G +
Sbjct: 101 IYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLSHMDLVYVIGGKGSD 160
Query: 79 RYTPEVDHWSLAVKDGKPLEKEWRTEIPIPRGGPHRACVVVDDRLLVIGGQEGDFMAKPG 138
R + V D P + EW+ P+ V D R++V G +
Sbjct: 161 RKCLN----KMCVYD--PKKFEWKELAPMQTARSLFGATVHDGRIIVAAGVTDTGLTSSA 214
Query: 139 SPIFKCSRRNEVVYDDVYMLDDEMKWKVLPSMPKPDSHIEFAWVLVNNSIVIVGGTTEKH 198
+VY + D KW + P+ S + V + ++ +GG
Sbjct: 215 ---------------EVYSITDN-KWAPFEAFPQERSSLSL--VSLVGTLYAIGGFATLE 256
Query: 199 PTTKKMV--LVGEIFQFNLNTLKWH-VIGKLPYRVKTTL 234
+ ++V + +I+++N KW V+ ++ Y T
Sbjct: 257 TESGELVPTELNDIWRYNEEEKKWEGVLREIAYAAGATF 295
Score = 35.4 bits (80), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 57/274 (20%), Positives = 103/274 (37%), Gaps = 38/274 (13%)
Query: 1 MPREMAHSHLGMVTDGRYIYVVTGQYGPQCRGP---TAHTFVLDTETKKWQDLPPLPVPR 57
+ ++ +H+ +VT ++V G + + +A+ D +W +PPLP PR
Sbjct: 30 LSSQVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPPLPSPR 89
Query: 58 YAPATQLWRGRLHVMGGSGENRYTPEVDHWSLAVKDGKPLEKEWRTEIPIPRGGPHRACV 117
++V+GG R + + +V L +W P+P +
Sbjct: 90 CLFGLGEALNSIYVVGG----REIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVL 145
Query: 118 VVDDRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYDDVYMLDDEMKWKVLPSMPKPDSHI 177
D + VIGG+ D KC + VYD + +WK L M S
Sbjct: 146 SHMDLVYVIGGKGSD---------RKCLNKM-CVYD-----PKKFEWKELAPMQTARSL- 189
Query: 178 EFAWVLVNNSIVIVGGTTEKHPTTKKMVLVGEIFQFNLNTLKWHVIGKLPYRVKTTLAGY 237
F + + I++ G T+ T+ V +++ KW P +
Sbjct: 190 -FGATVHDGRIIVAAGVTDTGLTSSAEV-------YSITDNKWAPFEAFPQERSSLSLVS 241
Query: 238 WNGWLY----FTSGQRDKGPDDPAPRKVHGDMWR 267
G LY F + + + G + P +++ D+WR
Sbjct: 242 LVGTLYAIGGFATLETESG--ELVPTELN-DIWR 272
>pdb|2DYH|A Chain A, Crystal Structure Of The Keap1 Protein In Complexed With
The N-Terminal Region Of The Nrf2 Transcription Factor
pdb|2Z32|A Chain A, Crystal Structure Of Keap1 Complexed With Prothymosin
Alpha
pdb|3ADE|A Chain A, Crystal Structure Of Keap1 In Complex With Sequestosome-
1P62
Length = 318
Score = 34.7 bits (78), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 50/119 (42%), Gaps = 13/119 (10%)
Query: 16 GRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLPVPRYAPATQLWRGRLHVMGGS 75
GR IY G + R ++ + W L L VPR A + G L+ +GG
Sbjct: 18 GRLIYTAGGYF----RQSLSYLEAYNPSNGSWLRLADLQVPRSGLAGCVVGGLLYAVGGR 73
Query: 76 GENRYTPEVDHWSLAVKDGKPLEKEWR--TEIPIPRGGPHRACV-VVDDRLLVIGGQEG 131
+P+ + S A+ P+ +W + +PR +R V V+D + +GG G
Sbjct: 74 NN---SPDGNTDSSALDCYNPMTNQWSPCASMSVPR---NRIGVGVIDGHIYAVGGSHG 126
Score = 29.3 bits (64), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 22/53 (41%), Gaps = 7/53 (13%)
Query: 44 TKKWQDLPPLPVPRYAPATQLWRGRLHVMGG-------SGENRYTPEVDHWSL 89
T +W + VPR + G ++ +GG S RY PE D W L
Sbjct: 93 TNQWSPCASMSVPRNRIGVGVIDGHIYAVGGSHGCIHHSSVERYEPERDEWHL 145
Score = 28.9 bits (63), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 7/55 (12%)
Query: 41 DTETKKWQDLPPLPVPRYAPATQLWRGRLHVMGG-------SGENRYTPEVDHWS 88
D ET+ W + P+ R A + +G+++V+GG Y P+ D WS
Sbjct: 231 DVETETWTFVAPMRHHRSALGITVHQGKIYVLGGYDGHTFLDSVECYDPDSDTWS 285
>pdb|1X2J|A Chain A, Structural Basis For The Defects Of Human Lung Cancer
Somatic Mutations In The Repression Activity Of Keap1 On
Nrf2
pdb|1X2R|A Chain A, Structural Basis For The Defects Of Human Lung Cancer
Somatic Mutations In The Repression Activity Of Keap1 On
Nrf2
Length = 316
Score = 34.7 bits (78), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 50/119 (42%), Gaps = 13/119 (10%)
Query: 16 GRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLPVPRYAPATQLWRGRLHVMGGS 75
GR IY G + R ++ + W L L VPR A + G L+ +GG
Sbjct: 17 GRLIYTAGGYF----RQSLSYLEAYNPSNGSWLRLADLQVPRSGLAGCVVGGLLYAVGGR 72
Query: 76 GENRYTPEVDHWSLAVKDGKPLEKEWR--TEIPIPRGGPHRACV-VVDDRLLVIGGQEG 131
+P+ + S A+ P+ +W + +PR +R V V+D + +GG G
Sbjct: 73 NN---SPDGNTDSSALDCYNPMTNQWSPCASMSVPR---NRIGVGVIDGHIYAVGGSHG 125
Score = 28.9 bits (63), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 22/53 (41%), Gaps = 7/53 (13%)
Query: 44 TKKWQDLPPLPVPRYAPATQLWRGRLHVMGG-------SGENRYTPEVDHWSL 89
T +W + VPR + G ++ +GG S RY PE D W L
Sbjct: 92 TNQWSPCASMSVPRNRIGVGVIDGHIYAVGGSHGCIHHSSVERYEPERDEWHL 144
Score = 28.9 bits (63), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 7/55 (12%)
Query: 41 DTETKKWQDLPPLPVPRYAPATQLWRGRLHVMGG-------SGENRYTPEVDHWS 88
D ET+ W + P+ R A + +G+++V+GG Y P+ D WS
Sbjct: 230 DVETETWTFVAPMRHHRSALGITVHQGKIYVLGGYDGHTFLDSVECYDPDSDTWS 284
>pdb|3VNG|A Chain A, Crystal Structure Of Keap1 In Complex With Synthetic Small
Molecular Based On A Co-crystallization
pdb|3VNH|A Chain A, Crystal Structure Of Keap1 Soaked With Synthetic Small
Molecular
Length = 309
Score = 33.9 bits (76), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 28/116 (24%), Positives = 45/116 (38%), Gaps = 7/116 (6%)
Query: 16 GRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLPVPRYAPATQLWRGRLHVMGGS 75
GR IY G + R ++ + W L L VPR A + G L+ +GG
Sbjct: 25 GRLIYTAGGYF----RQSLSYLEAYNPSDGTWLRLADLQVPRSGLAGCVVGGLLYAVGGR 80
Query: 76 GENRYTPEVDHWSLAVKDGKPLEKEWRTEIPIPRGGPHRACVVVDDRLLVIGGQEG 131
+P+ + S A+ P+ +W P+ V+D + +GG G
Sbjct: 81 NN---SPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIGVGVIDGHIYAVGGSHG 133
Score = 31.6 bits (70), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 23/53 (43%), Gaps = 7/53 (13%)
Query: 44 TKKWQDLPPLPVPRYAPATQLWRGRLHVMGGS-------GENRYTPEVDHWSL 89
T +W P+ VPR + G ++ +GGS RY PE D W L
Sbjct: 100 TNQWSPCAPMSVPRNRIGVGVIDGHIYAVGGSHGCIHHNSVERYEPERDEWHL 152
Score = 31.2 bits (69), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 7/55 (12%)
Query: 41 DTETKKWQDLPPLPVPRYAPATQLWRGRLHVMGG-------SGENRYTPEVDHWS 88
D ET+ W + P+ R A + +GR++V+GG Y P+ D WS
Sbjct: 238 DVETETWTFVAPMKHRRSALGITVHQGRIYVLGGYDGHTFLDSVECYDPDTDTWS 292
>pdb|1U6D|X Chain X, Crystal Structure Of The Kelch Domain Of Human Keap1
pdb|2FLU|X Chain X, Crystal Structure Of The Kelch-Neh2 Complex
Length = 308
Score = 33.9 bits (76), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 28/116 (24%), Positives = 45/116 (38%), Gaps = 7/116 (6%)
Query: 16 GRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLPVPRYAPATQLWRGRLHVMGGS 75
GR IY G + R ++ + W L L VPR A + G L+ +GG
Sbjct: 24 GRLIYTAGGYF----RQSLSYLEAYNPSDGTWLRLADLQVPRSGLAGCVVGGLLYAVGGR 79
Query: 76 GENRYTPEVDHWSLAVKDGKPLEKEWRTEIPIPRGGPHRACVVVDDRLLVIGGQEG 131
+P+ + S A+ P+ +W P+ V+D + +GG G
Sbjct: 80 NN---SPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIGVGVIDGHIYAVGGSHG 132
Score = 31.6 bits (70), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 23/53 (43%), Gaps = 7/53 (13%)
Query: 44 TKKWQDLPPLPVPRYAPATQLWRGRLHVMGGS-------GENRYTPEVDHWSL 89
T +W P+ VPR + G ++ +GGS RY PE D W L
Sbjct: 99 TNQWSPCAPMSVPRNRIGVGVIDGHIYAVGGSHGCIHHNSVERYEPERDEWHL 151
Score = 31.2 bits (69), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 7/55 (12%)
Query: 41 DTETKKWQDLPPLPVPRYAPATQLWRGRLHVMGG-------SGENRYTPEVDHWS 88
D ET+ W + P+ R A + +GR++V+GG Y P+ D WS
Sbjct: 237 DVETETWTFVAPMKHRRSALGITVHQGRIYVLGGYDGHTFLDSVECYDPDTDTWS 291
>pdb|2VPJ|A Chain A, Crystal Structure Of The Kelch Domain Of Human Klhl12
Length = 301
Score = 32.7 bits (73), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 38/103 (36%), Gaps = 16/103 (15%)
Query: 2 PREMAHSHLGMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDT---ETKKWQDLPPLPVPRY 58
P S G+ +IYVV G G TAH ++ T W + + PR
Sbjct: 192 PMATKRSGAGVALLNDHIYVVGGFDG------TAHLSSVEAYNIRTDSWTTVTSMTTPRC 245
Query: 59 APATQLWRGRLHVMGGSGENR-------YTPEVDHWSLAVKDG 94
+ RGRL+ + G N Y P +D W + G
Sbjct: 246 YVGATVLRGRLYAIAGYDGNSLLSSIECYDPIIDSWEVVTSMG 288
Score = 28.9 bits (63), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 25/131 (19%), Positives = 45/131 (34%), Gaps = 10/131 (7%)
Query: 4 EMAHSHLGMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLPVPRYAPATQ 63
+ A G+V IY + G G D T W ++ P+ R
Sbjct: 147 QTAREGAGLVVASGVIYCLGGYDGLNILNSVEK---YDPHTGHWTNVTPMATKRSGAGVA 203
Query: 64 LWRGRLHVMGGSGENRYTPEVDHWSLAVKDGKPLEKEWRTEIPIPRGGPHRACVVVDDRL 123
L ++V+GG + V+ +++ W T + + V+ RL
Sbjct: 204 LLNDHIYVVGGFDGTAHLSSVEAYNIRT-------DSWTTVTSMTTPRCYVGATVLRGRL 256
Query: 124 LVIGGQEGDFM 134
I G +G+ +
Sbjct: 257 YAIAGYDGNSL 267
Score = 27.3 bits (59), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 30/63 (47%), Gaps = 6/63 (9%)
Query: 69 LHVMGGSGENRYTPEVDHWSLAVKDGKPLEKEWRTEIPIPRGGPHRACVVVDDRLLVIGG 128
L V+GG G + +V V+ P +EW I R + A V + DR+ VIGG
Sbjct: 17 LLVVGGFGSQQSPIDV------VEKYDPKTQEWSFLPSITRKRRYVASVSLHDRIYVIGG 70
Query: 129 QEG 131
+G
Sbjct: 71 YDG 73
>pdb|1ZGK|A Chain A, 1.35 Angstrom Structure Of The Kelch Domain Of Keap1
Length = 308
Score = 32.7 bits (73), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 49/119 (41%), Gaps = 13/119 (10%)
Query: 16 GRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLPVPRYAPATQLWRGRLHVMGGS 75
GR IY G + R ++ + W L L VPR A + G L+ +GG
Sbjct: 24 GRLIYTAGGYF----RQSLSYLEAYNPSNGTWLRLADLQVPRSGLAGCVVGGLLYAVGGR 79
Query: 76 GENRYTPEVDHWSLAVKDGKPLEKEWRTEIP--IPRGGPHRACV-VVDDRLLVIGGQEG 131
+P+ + S A+ P +W P +PR +R V V+D + +GG G
Sbjct: 80 NN---SPDGNTDSSALDCYNPXTNQWSPCAPXSVPR---NRIGVGVIDGHIYAVGGSHG 132
Score = 30.8 bits (68), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 36/94 (38%), Gaps = 8/94 (8%)
Query: 4 EMAHSHLGMVTDGRYIYVVTGQY-GPQCRGPTAHTFVLDTETKKWQDLPPLPVPRYAPAT 62
++ S L G +Y V G+ P ++ + T +W P VPR
Sbjct: 58 QVPRSGLAGCVVGGLLYAVGGRNNSPDGNTDSSALDCYNPXTNQWSPCAPXSVPRNRIGV 117
Query: 63 QLWRGRLHVMGGS-------GENRYTPEVDHWSL 89
+ G ++ +GGS RY PE D W L
Sbjct: 118 GVIDGHIYAVGGSHGCIHHNSVERYEPERDEWHL 151
Score = 29.6 bits (65), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 25/55 (45%), Gaps = 7/55 (12%)
Query: 41 DTETKKWQDLPPLPVPRYAPATQLWRGRLHVMGG-------SGENRYTPEVDHWS 88
D ET+ W + P R A + +GR++V+GG Y P+ D WS
Sbjct: 237 DVETETWTFVAPXKHRRSALGITVHQGRIYVLGGYDGHTFLDSVECYDPDTDTWS 291
>pdb|1S9V|A Chain A, Crystal Structure Of Hla-Dq2 Complexed With Deamidated
Gliadin Peptide
pdb|1S9V|D Chain D, Crystal Structure Of Hla-Dq2 Complexed With Deamidated
Gliadin Peptide
Length = 193
Score = 31.2 bits (69), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 18/34 (52%), Gaps = 4/34 (11%)
Query: 75 SGENRYTPEVDHWSLAVKDGKPLEKEWRTEIPIP 108
S E Y +V+HW L KPL K W EIP P
Sbjct: 158 SAEESYDCKVEHWGL----DKPLLKHWEPEIPAP 187
>pdb|4HEC|A Chain A, Crystal Structure Of A Putative Uncharacterized Protein
From Mycobacterium Tuberculosis
pdb|4HEC|B Chain B, Crystal Structure Of A Putative Uncharacterized Protein
From Mycobacterium Tuberculosis
pdb|4HVJ|A Chain A, Crystal Structure Of A Putative Uncharacterized Protein
From Mycobacterium Tuberculosis In Complex With Amp
pdb|4HVJ|B Chain B, Crystal Structure Of A Putative Uncharacterized Protein
From Mycobacterium Tuberculosis In Complex With Amp
Length = 190
Score = 30.8 bits (68), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 30/63 (47%), Gaps = 15/63 (23%)
Query: 10 LGMVT-DGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLPVPRYAPATQLWRGR 68
+G+V DGR Y V+ ++ P+ G T V LP LP PA+QLWR R
Sbjct: 43 IGVVAEDGREYYAVSTEFDPERAGSWVRTHV----------LPKLP----PPASQLWRSR 88
Query: 69 LHV 71
+
Sbjct: 89 QQI 91
>pdb|2UVK|A Chain A, Structure Of Yjht
pdb|2UVK|B Chain B, Structure Of Yjht
Length = 357
Score = 30.8 bits (68), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 28/65 (43%), Gaps = 15/65 (23%)
Query: 38 FVLDTETK--KWQDLPPLPV-PRYAPATQLWRGRLHVMGGSGEN------------RYTP 82
+ LDT+ K KW L P PR + G L+V GG G+N +Y P
Sbjct: 34 YKLDTQAKDKKWTALAAFPGGPRDQATSAFIDGNLYVFGGIGKNSEGLTQVFNDVHKYNP 93
Query: 83 EVDHW 87
+ + W
Sbjct: 94 KTNSW 98
>pdb|2CN3|A Chain A, Crystal Structures Of Clostridium Thermocellum
Xyloglucanase
pdb|2CN3|B Chain B, Crystal Structures Of Clostridium Thermocellum
Xyloglucanase
Length = 737
Score = 29.3 bits (64), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 45/100 (45%), Gaps = 15/100 (15%)
Query: 135 AKPGSPI----FKCSRRNEVVYDDVYMLDDEMKWKVLPSMPKPDSHIEFAWVLVNNSIVI 190
+ PG+P + +NE +Y D + WK +P PK + VL +N ++
Sbjct: 204 STPGNPTKTIYVGVADKNESIYRST---DGGVTWKAVPGQPK--GLLPHHGVLASNGMLY 258
Query: 191 V--GGTTEKHPTTKKMVLVGEIFQFNLNTLKWHVIGKLPY 228
+ G T + K G++++FN T +W I +PY
Sbjct: 259 ITYGDTCGPYDGNGK----GQVWKFNTRTGEWIDITPIPY 294
>pdb|2XN4|A Chain A, Crystal Structure Of The Kelch Domain Of Human Klhl2
(mayven)
pdb|2XN4|B Chain B, Crystal Structure Of The Kelch Domain Of Human Klhl2
(mayven)
Length = 302
Score = 28.9 bits (63), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 30/78 (38%), Gaps = 10/78 (12%)
Query: 19 IYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLPVPRYAPATQLWRGRLHVMGG---- 74
+Y V G GP R V D T W+ + + + R G L+V+GG
Sbjct: 207 LYAVGGHDGPLVRKSVE---VYDPTTNAWRQVADMNMCRRNAGVCAVNGLLYVVGGDDGS 263
Query: 75 ---SGENRYTPEVDHWSL 89
+ Y P D W++
Sbjct: 264 CNLASVEYYNPTTDKWTV 281
>pdb|2CN2|A Chain A, Crystal Structures Of Clostridium Thermocellum
Xyloglucanase
pdb|2CN2|B Chain B, Crystal Structures Of Clostridium Thermocellum
Xyloglucanase
pdb|2CN2|C Chain C, Crystal Structures Of Clostridium Thermocellum
Xyloglucanase
pdb|2CN2|D Chain D, Crystal Structures Of Clostridium Thermocellum
Xyloglucanase
Length = 737
Score = 28.5 bits (62), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 44/100 (44%), Gaps = 15/100 (15%)
Query: 135 AKPGSPI----FKCSRRNEVVYDDVYMLDDEMKWKVLPSMPKPDSHIEFAWVLVNNSIVI 190
+ PG+P + +NE +Y D + WK +P PK + VL +N +
Sbjct: 204 STPGNPTKTIYVGVADKNESIYRST---DGGVTWKAVPGQPK--GLLPHHGVLASNGXLY 258
Query: 191 V--GGTTEKHPTTKKMVLVGEIFQFNLNTLKWHVIGKLPY 228
+ G T + K G++++FN T +W I +PY
Sbjct: 259 ITYGDTCGPYDGNGK----GQVWKFNTRTGEWIDITPIPY 294
>pdb|2EC8|A Chain A, Crystal Structure Of The Exctracellular Domain Of The
Receptor Tyrosine Kinase, Kit
Length = 524
Score = 27.7 bits (60), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 23/45 (51%), Gaps = 10/45 (22%)
Query: 82 PEVDHWSLAVKDGKPLEKEWRTEIPIPRGGP---------HRACV 117
PEV ++SL GKPL K+ R IP P+ G HR C+
Sbjct: 141 PEVTNYSLKGCQGKPLPKDLRF-IPDPKAGIMIKSVKRAYHRLCL 184
>pdb|1UVQ|A Chain A, Crystal Structure Of Hla-Dq0602 In Complex With A
Hypocretin Peptide
Length = 197
Score = 27.7 bits (60), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 4/34 (11%)
Query: 75 SGENRYTPEVDHWSLAVKDGKPLEKEWRTEIPIP 108
S + Y +V+HW L +PL K W EIP P
Sbjct: 159 SADEIYDCKVEHWGL----DQPLLKHWEPEIPAP 188
>pdb|3PL6|A Chain A, Structure Of Autoimmune Tcr Hy.1b11 In Complex With
Hla-Dq1 And Mbp 85-99
Length = 194
Score = 27.7 bits (60), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 4/34 (11%)
Query: 75 SGENRYTPEVDHWSLAVKDGKPLEKEWRTEIPIP 108
S + Y +V+HW L +PL K W EIP P
Sbjct: 159 SADEIYDCKVEHWGL----DQPLLKHWEPEIPAP 188
>pdb|4D8P|A Chain A, Structural And Functional Studies Of The Trans-Encoded
Hla-Dq2.3 (Dqa103:01DQB102:01) MOLECULE
pdb|4D8P|C Chain C, Structural And Functional Studies Of The Trans-Encoded
Hla-Dq2.3 (Dqa103:01DQB102:01) MOLECULE
Length = 213
Score = 27.7 bits (60), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 4/34 (11%)
Query: 75 SGENRYTPEVDHWSLAVKDGKPLEKEWRTEIPIP 108
S + Y +V+HW L +PL K W EIP P
Sbjct: 159 SADEIYDCKVEHWGL----DEPLLKHWEPEIPTP 188
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.139 0.460
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,140,687
Number of Sequences: 62578
Number of extensions: 468397
Number of successful extensions: 878
Number of sequences better than 100.0: 23
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 845
Number of HSP's gapped (non-prelim): 45
length of query: 274
length of database: 14,973,337
effective HSP length: 97
effective length of query: 177
effective length of database: 8,903,271
effective search space: 1575878967
effective search space used: 1575878967
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)