Query 024009
Match_columns 274
No_of_seqs 115 out of 1253
Neff 10.1
Searched_HMMs 46136
Date Fri Mar 29 08:15:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024009.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024009hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4441 Proteins containing BT 100.0 3.5E-41 7.6E-46 302.0 24.7 237 2-272 318-556 (571)
2 PHA02713 hypothetical protein; 100.0 1.1E-40 2.4E-45 299.8 25.4 250 2-271 289-542 (557)
3 PLN02153 epithiospecifier prot 100.0 1.2E-36 2.5E-41 260.2 27.8 246 3-269 19-291 (341)
4 KOG4441 Proteins containing BT 100.0 4.4E-37 9.5E-42 275.6 23.3 234 5-273 274-510 (571)
5 TIGR03548 mutarot_permut cycli 100.0 2.1E-36 4.5E-41 256.8 25.9 230 2-259 58-323 (323)
6 PHA03098 kelch-like protein; P 100.0 1.9E-36 4E-41 273.7 26.5 234 7-271 285-520 (534)
7 PHA02790 Kelch-like protein; P 100.0 9.4E-36 2E-40 264.3 25.4 208 12-268 267-476 (480)
8 PLN02193 nitrile-specifier pro 100.0 5.1E-35 1.1E-39 258.9 27.5 232 3-269 162-417 (470)
9 TIGR03547 muta_rot_YjhT mutatr 100.0 1.8E-34 3.8E-39 247.4 24.7 237 2-254 48-336 (346)
10 TIGR03547 muta_rot_YjhT mutatr 100.0 3.4E-34 7.3E-39 245.7 25.4 255 2-272 3-308 (346)
11 TIGR03548 mutarot_permut cycli 100.0 1.8E-33 4E-38 238.8 24.6 234 5-272 2-289 (323)
12 KOG4693 Uncharacterized conser 100.0 1.4E-34 3.1E-39 225.3 16.2 225 4-250 76-313 (392)
13 PRK14131 N-acetylneuraminic ac 100.0 2E-33 4.3E-38 242.9 23.7 231 5-251 73-355 (376)
14 PLN02153 epithiospecifier prot 100.0 6E-33 1.3E-37 237.3 26.3 240 8-269 77-337 (341)
15 PHA02713 hypothetical protein; 100.0 2.8E-33 6.1E-38 251.9 24.1 214 34-273 271-500 (557)
16 PLN02193 nitrile-specifier pro 100.0 1.6E-32 3.5E-37 243.1 26.9 229 6-271 218-468 (470)
17 KOG4693 Uncharacterized conser 100.0 6E-33 1.3E-37 216.3 17.2 244 6-270 13-284 (392)
18 PRK14131 N-acetylneuraminic ac 100.0 1.2E-31 2.7E-36 231.7 25.1 255 2-272 24-330 (376)
19 PHA03098 kelch-like protein; P 100.0 7.7E-30 1.7E-34 230.6 23.5 197 2-231 328-526 (534)
20 PHA02790 Kelch-like protein; P 100.0 5.2E-30 1.1E-34 227.6 21.7 174 2-223 304-477 (480)
21 KOG1230 Protein containing rep 100.0 5.6E-30 1.2E-34 210.3 18.6 247 1-269 61-347 (521)
22 KOG0379 Kelch repeat-containin 100.0 1.1E-28 2.4E-33 218.2 25.4 236 3-270 57-309 (482)
23 KOG0379 Kelch repeat-containin 99.9 3.7E-24 8.1E-29 189.5 21.0 206 3-239 109-328 (482)
24 KOG4152 Host cell transcriptio 99.9 1.7E-24 3.6E-29 182.7 16.1 239 2-269 28-309 (830)
25 KOG1230 Protein containing rep 99.9 8.8E-23 1.9E-27 168.2 15.7 201 51-272 61-276 (521)
26 KOG4152 Host cell transcriptio 99.9 8.2E-22 1.8E-26 166.5 15.3 225 4-250 79-343 (830)
27 COG3055 Uncharacterized protei 99.9 2E-20 4.2E-25 152.2 17.2 239 5-261 81-371 (381)
28 COG3055 Uncharacterized protei 99.8 8.8E-18 1.9E-22 136.9 15.9 247 9-272 39-336 (381)
29 PF13964 Kelch_6: Kelch motif 99.5 2.6E-13 5.5E-18 82.2 6.5 50 6-57 1-50 (50)
30 KOG2437 Muskelin [Signal trans 99.4 5.5E-14 1.2E-18 119.3 2.6 179 3-199 257-461 (723)
31 PF01344 Kelch_1: Kelch motif; 99.2 1.3E-11 2.8E-16 73.7 3.2 47 6-54 1-47 (47)
32 PF13964 Kelch_6: Kelch motif 99.2 1E-10 2.2E-15 70.7 6.1 46 179-230 5-50 (50)
33 PF13415 Kelch_3: Galactose ox 99.2 9.9E-11 2.1E-15 70.4 5.9 49 16-65 1-49 (49)
34 PF07646 Kelch_2: Kelch motif; 99.2 1.5E-10 3.2E-15 69.6 6.3 49 6-54 1-49 (49)
35 KOG2437 Muskelin [Signal trans 99.1 5.8E-11 1.2E-15 101.2 5.5 183 44-250 238-458 (723)
36 PF13418 Kelch_4: Galactose ox 99.1 8.7E-11 1.9E-15 70.7 3.6 48 6-55 1-49 (49)
37 PF13415 Kelch_3: Galactose ox 99.0 9E-10 1.9E-14 66.2 5.7 48 185-238 1-49 (49)
38 PF01344 Kelch_1: Kelch motif; 99.0 1.7E-09 3.8E-14 64.3 5.4 43 179-227 5-47 (47)
39 smart00612 Kelch Kelch domain. 98.9 2.6E-09 5.7E-14 63.5 4.9 47 18-67 1-47 (47)
40 PF13854 Kelch_5: Kelch motif 98.8 1E-08 2.2E-13 59.3 5.3 42 3-45 1-42 (42)
41 PF13418 Kelch_4: Galactose ox 98.8 1E-08 2.2E-13 61.6 4.3 48 173-228 1-49 (49)
42 smart00612 Kelch Kelch domain. 98.7 1.7E-08 3.6E-13 59.9 4.4 47 187-240 1-47 (47)
43 PF07646 Kelch_2: Kelch motif; 98.7 5E-08 1.1E-12 58.5 5.1 46 56-108 1-49 (49)
44 PF07250 Glyoxal_oxid_N: Glyox 98.6 7.6E-06 1.6E-10 65.9 18.0 178 10-229 2-211 (243)
45 PLN02772 guanylate kinase 98.6 2.2E-07 4.7E-12 79.3 9.0 70 5-76 23-96 (398)
46 PF13854 Kelch_5: Kelch motif 98.4 5.4E-07 1.2E-11 52.0 5.0 42 226-273 1-42 (42)
47 PLN02772 guanylate kinase 98.3 5.2E-06 1.1E-10 71.0 9.0 67 179-251 28-98 (398)
48 PF03089 RAG2: Recombination a 98.2 0.00015 3.4E-09 58.4 15.5 112 19-132 40-176 (337)
49 PF07250 Glyoxal_oxid_N: Glyox 98.1 0.00021 4.5E-09 57.7 13.9 138 92-266 49-201 (243)
50 TIGR01640 F_box_assoc_1 F-box 97.8 0.005 1.1E-07 49.7 18.5 181 35-247 14-215 (230)
51 PF07893 DUF1668: Protein of u 97.8 0.0025 5.4E-08 54.7 16.2 133 13-176 73-223 (342)
52 PF03089 RAG2: Recombination a 97.6 0.0019 4.1E-08 52.4 12.3 86 3-88 84-186 (337)
53 TIGR01640 F_box_assoc_1 F-box 97.4 0.0085 1.8E-07 48.3 14.1 149 35-218 70-230 (230)
54 PF07893 DUF1668: Protein of u 96.3 0.58 1.3E-05 40.2 16.9 129 65-228 75-221 (342)
55 PF12768 Rax2: Cortical protei 96.2 0.21 4.5E-06 41.5 12.8 119 20-169 2-130 (281)
56 PRK11138 outer membrane biogen 95.7 1.3 2.8E-05 38.8 20.5 153 11-222 64-231 (394)
57 PF12217 End_beta_propel: Cata 95.4 0.91 2E-05 36.9 12.9 224 8-251 76-336 (367)
58 PF12768 Rax2: Cortical protei 95.3 0.27 5.8E-06 40.9 10.4 107 153-271 16-130 (281)
59 PF13360 PQQ_2: PQQ-like domai 95.1 1.4 3E-05 35.3 17.7 161 36-248 4-182 (238)
60 KOG2055 WD40 repeat protein [G 94.7 1.1 2.5E-05 39.1 12.6 148 16-220 224-378 (514)
61 cd00094 HX Hemopexin-like repe 93.3 3.2 6.9E-05 32.5 13.3 48 185-248 110-167 (194)
62 KOG2055 WD40 repeat protein [G 93.1 3.1 6.7E-05 36.5 12.2 84 153-248 280-365 (514)
63 PF08450 SGL: SMP-30/Gluconola 93.1 3.7 8E-05 33.2 12.7 48 16-73 51-103 (246)
64 PRK04792 tolB translocation pr 92.6 7.4 0.00016 34.8 17.4 145 35-224 242-390 (448)
65 PF03178 CPSF_A: CPSF A subuni 92.5 4.1 8.9E-05 34.5 12.6 110 100-247 78-190 (321)
66 PRK11138 outer membrane biogen 92.4 7.1 0.00015 34.2 21.0 71 154-246 267-342 (394)
67 TIGR02800 propeller_TolB tol-p 92.4 7.2 0.00016 34.2 17.3 60 153-224 302-362 (417)
68 PF09910 DUF2139: Uncharacteri 92.3 5.9 0.00013 33.1 16.4 153 6-191 36-219 (339)
69 cd00094 HX Hemopexin-like repe 92.2 4.5 9.8E-05 31.6 14.3 26 180-219 153-178 (194)
70 PRK00178 tolB translocation pr 91.7 9 0.0002 33.9 17.9 145 35-225 223-372 (430)
71 PF05096 Glu_cyclase_2: Glutam 91.6 2.4 5.2E-05 34.8 9.5 160 7-222 45-209 (264)
72 PF05096 Glu_cyclase_2: Glutam 91.5 2.9 6.3E-05 34.3 9.9 96 119-250 54-150 (264)
73 PRK04922 tolB translocation pr 90.2 13 0.00028 33.1 17.8 60 153-224 316-376 (433)
74 PF02191 OLF: Olfactomedin-lik 89.8 8.6 0.00019 31.5 11.3 161 66-262 30-203 (250)
75 TIGR03300 assembly_YfgL outer 89.8 13 0.00027 32.3 20.2 151 10-222 59-216 (377)
76 TIGR03300 assembly_YfgL outer 88.7 15 0.00033 31.8 20.8 156 35-246 200-368 (377)
77 PF09910 DUF2139: Uncharacteri 87.8 15 0.00033 30.7 14.0 163 48-245 26-219 (339)
78 PRK05137 tolB translocation pr 87.4 20 0.00044 31.8 17.5 20 35-54 226-245 (435)
79 PRK05137 tolB translocation pr 85.8 25 0.00054 31.3 16.5 60 153-224 270-330 (435)
80 PF08268 FBA_3: F-box associat 85.3 10 0.00022 27.3 8.5 84 13-105 2-88 (129)
81 PF10282 Lactonase: Lactonase, 85.3 19 0.00042 30.9 11.5 151 34-224 165-332 (345)
82 PLN03215 ascorbic acid mannose 84.9 22 0.00048 30.9 11.4 104 98-227 189-305 (373)
83 PRK04043 tolB translocation pr 83.1 33 0.00072 30.5 14.8 151 35-225 213-366 (419)
84 COG1520 FOG: WD40-like repeat 82.9 31 0.00066 29.9 16.3 153 13-222 65-225 (370)
85 PRK04792 tolB translocation pr 81.5 40 0.00086 30.2 16.8 59 153-224 286-346 (448)
86 PRK03629 tolB translocation pr 81.3 39 0.00085 30.1 18.3 61 153-225 311-372 (429)
87 PRK04922 tolB translocation pr 81.3 39 0.00085 30.0 16.8 59 153-224 272-332 (433)
88 PF12217 End_beta_propel: Cata 80.8 30 0.00065 28.4 11.7 209 12-250 21-260 (367)
89 smart00284 OLF Olfactomedin-li 80.1 32 0.00069 28.3 12.0 137 98-263 61-209 (255)
90 PF02191 OLF: Olfactomedin-lik 79.0 34 0.00074 28.0 13.5 184 15-245 29-236 (250)
91 PF13859 BNR_3: BNR repeat-lik 76.9 44 0.00094 28.4 10.4 198 11-227 3-217 (310)
92 KOG0310 Conserved WD40 repeat- 76.6 56 0.0012 29.2 13.6 98 15-132 78-177 (487)
93 PRK02889 tolB translocation pr 76.1 56 0.0012 29.0 17.2 16 209-224 353-368 (427)
94 TIGR03075 PQQ_enz_alc_DH PQQ-d 74.4 70 0.0015 29.5 11.8 95 115-245 64-171 (527)
95 PF08268 FBA_3: F-box associat 74.1 23 0.00051 25.4 7.2 58 183-248 3-63 (129)
96 PRK00178 tolB translocation pr 72.7 68 0.0015 28.4 16.8 60 153-224 267-327 (430)
97 PF08950 DUF1861: Protein of u 72.5 55 0.0012 27.2 10.2 192 13-223 33-239 (298)
98 TIGR03075 PQQ_enz_alc_DH PQQ-d 70.8 87 0.0019 28.8 14.2 122 60-222 63-197 (527)
99 TIGR02800 propeller_TolB tol-p 70.6 73 0.0016 27.8 16.9 59 153-224 258-318 (417)
100 PRK13684 Ycf48-like protein; P 70.5 68 0.0015 27.5 15.9 164 36-248 153-322 (334)
101 PF03178 CPSF_A: CPSF A subuni 70.5 51 0.0011 27.9 9.5 96 17-126 42-145 (321)
102 PRK04043 tolB translocation pr 70.1 80 0.0017 28.1 11.9 59 153-223 257-316 (419)
103 PF08450 SGL: SMP-30/Gluconola 70.0 40 0.00086 27.1 8.5 74 153-245 22-102 (246)
104 PF14583 Pectate_lyase22: Olig 68.3 21 0.00045 31.2 6.6 88 153-251 216-305 (386)
105 TIGR03866 PQQ_ABC_repeats PQQ- 67.3 67 0.0014 26.1 17.1 13 35-47 11-23 (300)
106 PF10282 Lactonase: Lactonase, 66.5 84 0.0018 26.9 14.0 66 36-108 16-83 (345)
107 TIGR03866 PQQ_ABC_repeats PQQ- 64.8 75 0.0016 25.8 13.0 11 209-219 96-106 (300)
108 PF14870 PSII_BNR: Photosynthe 64.6 88 0.0019 26.5 16.3 177 12-249 67-253 (302)
109 PRK01742 tolB translocation pr 64.4 1E+02 0.0023 27.3 16.0 15 209-223 354-368 (429)
110 PRK02889 tolB translocation pr 63.9 1.1E+02 0.0023 27.2 17.2 59 153-223 264-323 (427)
111 KOG0286 G-protein beta subunit 63.8 88 0.0019 26.3 14.2 38 1-46 93-130 (343)
112 KOG0649 WD40 repeat protein [G 62.0 87 0.0019 25.6 13.1 68 5-88 114-184 (325)
113 PF13859 BNR_3: BNR repeat-lik 61.6 1E+02 0.0022 26.2 9.4 186 10-226 63-279 (310)
114 KOG0278 Serine/threonine kinas 61.1 92 0.002 25.6 10.2 55 182-250 232-289 (334)
115 KOG4378 Nuclear protein COP1 [ 59.4 1.4E+02 0.003 27.1 12.1 28 101-130 203-230 (673)
116 PLN03215 ascorbic acid mannose 57.8 1.3E+02 0.0028 26.3 13.0 110 44-172 189-306 (373)
117 PF13088 BNR_2: BNR repeat-lik 57.2 1.1E+02 0.0023 25.0 10.5 194 16-244 58-275 (275)
118 KOG0310 Conserved WD40 repeat- 57.0 1.5E+02 0.0032 26.7 15.5 51 185-250 249-301 (487)
119 PF02897 Peptidase_S9_N: Proly 56.6 1.4E+02 0.003 26.2 10.8 152 35-223 252-411 (414)
120 COG3823 Glutamine cyclotransfe 54.3 1.1E+02 0.0024 24.5 11.2 105 4-128 43-148 (262)
121 PRK10115 protease 2; Provision 53.2 2.1E+02 0.0046 27.4 15.8 17 208-224 386-402 (686)
122 PF13360 PQQ_2: PQQ-like domai 52.4 1.1E+02 0.0025 24.0 20.1 172 12-246 32-219 (238)
123 PRK03629 tolB translocation pr 50.7 1.8E+02 0.004 25.8 17.3 59 153-223 267-326 (429)
124 KOG2321 WD40 repeat protein [G 47.9 79 0.0017 29.1 6.8 68 5-88 132-203 (703)
125 COG3823 Glutamine cyclotransfe 47.2 1.5E+02 0.0032 23.8 7.7 100 115-249 50-150 (262)
126 PRK11028 6-phosphogluconolacto 46.9 1.8E+02 0.0038 24.5 17.6 48 18-73 3-53 (330)
127 KOG1332 Vesicle coat complex C 44.7 1.7E+02 0.0037 24.0 7.5 103 18-169 176-296 (299)
128 cd00200 WD40 WD40 domain, foun 44.6 1.5E+02 0.0033 23.1 16.1 23 16-46 20-42 (289)
129 KOG0315 G-protein beta subunit 41.7 2E+02 0.0043 23.7 16.6 50 34-88 60-111 (311)
130 PF14870 PSII_BNR: Photosynthe 40.2 2.3E+02 0.005 24.0 15.8 171 15-245 26-203 (302)
131 smart00284 OLF Olfactomedin-li 40.0 2.1E+02 0.0046 23.5 16.3 22 52-73 69-90 (255)
132 KOG0281 Beta-TrCP (transducin 39.7 1.8E+02 0.0039 25.2 7.3 15 182-196 406-420 (499)
133 COG0823 TolB Periplasmic compo 38.5 2.9E+02 0.0063 24.7 10.1 59 153-223 262-321 (425)
134 KOG2321 WD40 repeat protein [G 37.4 3.5E+02 0.0075 25.3 10.0 11 121-131 187-197 (703)
135 KOG1332 Vesicle coat complex C 37.0 2.4E+02 0.0052 23.2 11.2 51 160-225 243-296 (299)
136 COG4946 Uncharacterized protei 36.9 3.3E+02 0.0071 24.8 13.2 38 35-74 107-146 (668)
137 PLN00181 protein SPA1-RELATED; 36.6 4.1E+02 0.0089 25.9 14.6 23 183-217 669-691 (793)
138 PF13540 RCC1_2: Regulator of 35.5 47 0.001 16.9 2.2 20 5-24 6-25 (30)
139 PTZ00421 coronin; Provisional 35.4 3.5E+02 0.0076 24.7 15.8 27 185-222 270-296 (493)
140 KOG0289 mRNA splicing factor [ 33.7 3.5E+02 0.0076 24.2 12.9 21 154-174 455-476 (506)
141 PF07734 FBA_1: F-box associat 33.5 2E+02 0.0044 21.4 8.0 85 13-105 2-91 (164)
142 PRK13684 Ycf48-like protein; P 33.3 3.1E+02 0.0067 23.5 19.4 77 155-247 154-233 (334)
143 cd00216 PQQ_DH Dehydrogenases 33.1 3.8E+02 0.0081 24.4 14.9 179 22-247 16-236 (488)
144 PF02897 Peptidase_S9_N: Proly 32.8 3.4E+02 0.0073 23.8 10.6 81 153-245 252-342 (414)
145 PRK11028 6-phosphogluconolacto 31.7 3.1E+02 0.0068 23.0 16.2 23 209-231 297-321 (330)
146 KOG0289 mRNA splicing factor [ 31.6 3.8E+02 0.0083 24.0 11.2 37 209-245 455-492 (506)
147 KOG2445 Nuclear pore complex c 30.8 2.8E+02 0.0062 23.6 7.0 48 17-65 184-245 (361)
148 PF07433 DUF1513: Protein of u 30.5 3.4E+02 0.0074 23.1 10.2 87 154-248 29-120 (305)
149 PF13570 PQQ_3: PQQ-like domai 29.4 1E+02 0.0022 16.6 3.6 27 9-44 14-40 (40)
150 KOG4499 Ca2+-binding protein R 29.3 3.2E+02 0.007 22.4 7.2 50 184-245 221-272 (310)
151 PF04616 Glyco_hydro_43: Glyco 28.9 3.2E+02 0.0069 22.3 12.8 160 57-247 10-197 (286)
152 KOG2111 Uncharacterized conser 28.6 2.5E+02 0.0055 23.9 6.4 56 16-73 58-119 (346)
153 PF06433 Me-amine-dh_H: Methyl 28.5 1.3E+02 0.0027 26.0 4.8 55 152-221 268-325 (342)
154 smart00155 PLDc Phospholipase 28.1 75 0.0016 15.7 2.2 20 7-26 4-23 (28)
155 COG4257 Vgb Streptogramin lyas 28.0 2.9E+02 0.0064 23.3 6.6 77 154-244 255-333 (353)
156 TIGR03032 conserved hypothetic 27.0 2.3E+02 0.0049 24.3 5.9 55 1-73 204-258 (335)
157 KOG0646 WD40 repeat protein [G 27.0 4.7E+02 0.01 23.6 10.9 32 176-219 279-310 (476)
158 cd00200 WD40 WD40 domain, foun 26.8 3E+02 0.0066 21.3 16.9 11 209-219 242-252 (289)
159 KOG0308 Conserved WD40 repeat- 26.4 2E+02 0.0044 27.0 5.9 14 119-132 128-141 (735)
160 PLN00033 photosystem II stabil 25.7 4.7E+02 0.01 23.2 19.1 50 183-247 336-389 (398)
161 PF15525 DUF4652: Domain of un 25.2 3.4E+02 0.0073 21.3 9.4 80 152-238 87-170 (200)
162 PF08950 DUF1861: Protein of u 24.2 4.1E+02 0.009 22.3 6.8 64 182-251 33-99 (298)
163 KOG2315 Predicted translation 23.6 5.9E+02 0.013 23.6 10.7 29 182-219 319-347 (566)
164 PTZ00420 coronin; Provisional 23.5 6.2E+02 0.013 23.7 15.5 27 185-223 274-300 (568)
165 KOG2445 Nuclear pore complex c 23.4 4.7E+02 0.01 22.3 14.0 38 185-227 183-220 (361)
166 PTZ00421 coronin; Provisional 22.3 6.1E+02 0.013 23.2 19.1 10 209-218 238-247 (493)
167 PF14781 BBS2_N: Ciliary BBSom 22.1 2.4E+02 0.0051 20.8 4.6 44 207-250 72-118 (136)
168 PF08662 eIF2A: Eukaryotic tra 22.1 3.8E+02 0.0082 20.7 8.8 32 184-226 110-141 (194)
169 KOG1898 Splicing factor 3b, su 22.0 8.5E+02 0.018 24.8 15.9 31 209-239 999-1029(1205)
170 KOG0772 Uncharacterized conser 21.8 6.4E+02 0.014 23.3 9.6 91 116-238 371-465 (641)
171 PLN00181 protein SPA1-RELATED; 21.6 7.6E+02 0.016 24.0 11.7 22 185-218 629-650 (793)
172 PF05262 Borrelia_P83: Borreli 20.8 6.3E+02 0.014 23.1 7.9 82 152-245 374-456 (489)
173 KOG0318 WD40 repeat stress pro 20.7 3.9E+02 0.0083 24.6 6.4 56 179-246 448-505 (603)
174 KOG0291 WD40-repeat-containing 20.2 8.1E+02 0.018 23.9 16.2 31 182-223 441-473 (893)
No 1
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=100.00 E-value=3.5e-41 Score=302.01 Aligned_cols=237 Identities=19% Similarity=0.350 Sum_probs=215.1
Q ss_pred CCCCCcCceeeEEeCCEEEEEcCcCCCCCCCCCCeeEEEECCCCCeeeCCCCCCCCCCceEEEECCeEEEEcCCCCCCCC
Q 024009 2 PREMAHSHLGMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLPVPRYAPATQLWRGRLHVMGGSGENRYT 81 (274)
Q Consensus 2 p~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~ 81 (274)
|+|.+|.++++++++++||++||.++ ....++++++||+.+++|..+++|+.+|..+++++++|.||++||.++..+.
T Consensus 318 ~m~~~r~~~~~~~~~~~lYv~GG~~~--~~~~l~~ve~YD~~~~~W~~~a~M~~~R~~~~v~~l~g~iYavGG~dg~~~l 395 (571)
T KOG4441|consen 318 PMPSPRCRVGVAVLNGKLYVVGGYDS--GSDRLSSVERYDPRTNQWTPVAPMNTKRSDFGVAVLDGKLYAVGGFDGEKSL 395 (571)
T ss_pred CCCcccccccEEEECCEEEEEccccC--CCcccceEEEecCCCCceeccCCccCccccceeEEECCEEEEEecccccccc
Confidence 67899999999999999999999985 1246899999999999999999999999999999999999999999988888
Q ss_pred CCccceEeeeecCCCCCCceeeccCCCCCCCcceeEEeCCEEEEEccCCCCCCCCCCCCccccccCceeecCceEEeC-C
Q 024009 82 PEVDHWSLAVKDGKPLEKEWRTEIPIPRGGPHRACVVVDDRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYDDVYMLD-D 160 (274)
Q Consensus 82 ~~~~~~~~~~~~~d~~~~~W~~~~~~p~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d-~ 160 (274)
.++|+|+ |.+++|..+++|+.+|.++++++++++||++||.+... ..++.++.|| .
T Consensus 396 ~svE~YD-------p~~~~W~~va~m~~~r~~~gv~~~~g~iYi~GG~~~~~----------------~~l~sve~YDP~ 452 (571)
T KOG4441|consen 396 NSVECYD-------PVTNKWTPVAPMLTRRSGHGVAVLGGKLYIIGGGDGSS----------------NCLNSVECYDPE 452 (571)
T ss_pred ccEEEec-------CCCCcccccCCCCcceeeeEEEEECCEEEEEcCcCCCc----------------cccceEEEEcCC
Confidence 8888876 89999999999999999999999999999999987652 1468899999 9
Q ss_pred CCCeEecCCCCCCCccceeeEEEeCCEEEEEeccCCCCCCcccccccCceEEEEcCCCceEEeccCCCccceeeeEEEcC
Q 024009 161 EMKWKVLPSMPKPDSHIEFAWVLVNNSIVIVGGTTEKHPTTKKMVLVGEIFQFNLNTLKWHVIGKLPYRVKTTLAGYWNG 240 (274)
Q Consensus 161 ~~~W~~~~~~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~i~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~ 240 (274)
+++|+.+++|+.+|.+ +++++.+++||++||..... .+..+++|||.+++|+.+++|+.+|..++++.+++
T Consensus 453 t~~W~~~~~M~~~R~~--~g~a~~~~~iYvvGG~~~~~-------~~~~VE~ydp~~~~W~~v~~m~~~rs~~g~~~~~~ 523 (571)
T KOG4441|consen 453 TNTWTLIAPMNTRRSG--FGVAVLNGKIYVVGGFDGTS-------ALSSVERYDPETNQWTMVAPMTSPRSAVGVVVLGG 523 (571)
T ss_pred CCceeecCCccccccc--ceEEEECCEEEEECCccCCC-------ccceEEEEcCCCCceeEcccCccccccccEEEECC
Confidence 9999999999999999 45799999999999998833 35579999999999999999999999999999999
Q ss_pred EEEEEccccCCC-CCCCCceeecCCeeeeeecc
Q 024009 241 WLYFTSGQRDKG-PDDPAPRKVHGDMWRTKLLL 272 (274)
Q Consensus 241 ~l~~~GG~~~~~-~~~~~~~~~~~~~W~~~~~~ 272 (274)
+||++||..+.. ..+.++|++.+|.|+...++
T Consensus 524 ~ly~vGG~~~~~~l~~ve~ydp~~d~W~~~~~~ 556 (571)
T KOG4441|consen 524 KLYAVGGFDGNNNLNTVECYDPETDTWTEVTEP 556 (571)
T ss_pred EEEEEecccCccccceeEEcCCCCCceeeCCCc
Confidence 999999988766 66778999999999987763
No 2
>PHA02713 hypothetical protein; Provisional
Probab=100.00 E-value=1.1e-40 Score=299.80 Aligned_cols=250 Identities=14% Similarity=0.174 Sum_probs=203.0
Q ss_pred CCCCCcCceeeEEeCCEEEEEcCcCCCCCCCCCCeeEEEECCCCCeeeCCCCCCCCCCceEEEECCeEEEEcCCCCCCCC
Q 024009 2 PREMAHSHLGMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLPVPRYAPATQLWRGRLHVMGGSGENRYT 81 (274)
Q Consensus 2 p~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~ 81 (274)
|+|.+|.++++++++++||++||..... ...+++++||+.+++|..+++||.+|..++++.++++||++||..+....
T Consensus 289 ~mp~~r~~~~~a~l~~~IYviGG~~~~~--~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~~~g~IYviGG~~~~~~~ 366 (557)
T PHA02713 289 TIPNHIINYASAIVDNEIIIAGGYNFNN--PSLNKVYKINIENKIHVELPPMIKNRCRFSLAVIDDTIYAIGGQNGTNVE 366 (557)
T ss_pred CCCccccceEEEEECCEEEEEcCCCCCC--CccceEEEEECCCCeEeeCCCCcchhhceeEEEECCEEEEECCcCCCCCC
Confidence 5678888999999999999999975322 34689999999999999999999999999999999999999998655444
Q ss_pred CCccceEeeeecCCCCCCceeeccCCCCCCCcceeEEeCCEEEEEccCCCCCCCCCCCCcccc--ccCceeecCceEEeC
Q 024009 82 PEVDHWSLAVKDGKPLEKEWRTEIPIPRGGPHRACVVVDDRLLVIGGQEGDFMAKPGSPIFKC--SRRNEVVYDDVYMLD 159 (274)
Q Consensus 82 ~~~~~~~~~~~~~d~~~~~W~~~~~~p~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~d 159 (274)
.++++|+ +.+++|+.+++||.++.++++++++++||++||.+....-.. ....+. .......++.++.||
T Consensus 367 ~sve~Yd-------p~~~~W~~~~~mp~~r~~~~~~~~~g~IYviGG~~~~~~~~~-~~~~~~~~~~~~~~~~~~ve~YD 438 (557)
T PHA02713 367 RTIECYT-------MGDDKWKMLPDMPIALSSYGMCVLDQYIYIIGGRTEHIDYTS-VHHMNSIDMEEDTHSSNKVIRYD 438 (557)
T ss_pred ceEEEEE-------CCCCeEEECCCCCcccccccEEEECCEEEEEeCCCccccccc-ccccccccccccccccceEEEEC
Confidence 5566555 899999999999999999999999999999999864310000 000000 000011256799999
Q ss_pred -CCCCeEecCCCCCCCccceeeEEEeCCEEEEEeccCCCCCCcccccccCceEEEEcCC-CceEEeccCCCccceeeeEE
Q 024009 160 -DEMKWKVLPSMPKPDSHIEFAWVLVNNSIVIVGGTTEKHPTTKKMVLVGEIFQFNLNT-LKWHVIGKLPYRVKTTLAGY 237 (274)
Q Consensus 160 -~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~i~~yd~~~-~~W~~~~~~p~~~~~~~~~~ 237 (274)
.+++|+.+++|+.+|.. ++++.++++||++||...... ..+.+++|||.+ ++|+.+++||.+|..+++++
T Consensus 439 P~td~W~~v~~m~~~r~~--~~~~~~~~~IYv~GG~~~~~~------~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~~ 510 (557)
T PHA02713 439 TVNNIWETLPNFWTGTIR--PGVVSHKDDIYVVCDIKDEKN------VKTCIFRYNTNTYNGWELITTTESRLSALHTIL 510 (557)
T ss_pred CCCCeEeecCCCCccccc--CcEEEECCEEEEEeCCCCCCc------cceeEEEecCCCCCCeeEccccCcccccceeEE
Confidence 89999999999999987 567999999999999764332 234689999999 89999999999999999999
Q ss_pred EcCEEEEEccccCCCCCCCCceeecCCeeeeeec
Q 024009 238 WNGWLYFTSGQRDKGPDDPAPRKVHGDMWRTKLL 271 (274)
Q Consensus 238 ~~~~l~~~GG~~~~~~~~~~~~~~~~~~W~~~~~ 271 (274)
++|+||++||.+. ..+.+.|++.++.|....+
T Consensus 511 ~~~~iyv~Gg~~~--~~~~e~yd~~~~~W~~~~~ 542 (557)
T PHA02713 511 HDNTIMMLHCYES--YMLQDTFNVYTYEWNHICH 542 (557)
T ss_pred ECCEEEEEeeecc--eeehhhcCcccccccchhh
Confidence 9999999999875 3467899999999987654
No 3
>PLN02153 epithiospecifier protein
Probab=100.00 E-value=1.2e-36 Score=260.16 Aligned_cols=246 Identities=16% Similarity=0.256 Sum_probs=187.0
Q ss_pred CCCCcCceeeEEeCCEEEEEcCcCCCCCCCCCCeeEEEECCCCCeeeCCCCC-CCC---CCceEEEECCeEEEEcCCCCC
Q 024009 3 REMAHSHLGMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLP-VPR---YAPATQLWRGRLHVMGGSGEN 78 (274)
Q Consensus 3 ~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~~-~~r---~~~~~~~~~~~iyv~GG~~~~ 78 (274)
.|.+|.+|++++++++|||+||...... ...+++++||+.+++|+.+++++ .+| ..|+++.++++||||||....
T Consensus 19 ~P~pR~~h~~~~~~~~iyv~GG~~~~~~-~~~~~~~~yd~~~~~W~~~~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~ 97 (341)
T PLN02153 19 GPGPRCSHGIAVVGDKLYSFGGELKPNE-HIDKDLYVFDFNTHTWSIAPANGDVPRISCLGVRMVAVGTKLYIFGGRDEK 97 (341)
T ss_pred CCCCCCcceEEEECCEEEEECCccCCCC-ceeCcEEEEECCCCEEEEcCccCCCCCCccCceEEEEECCEEEEECCCCCC
Confidence 5789999999999999999999864321 34579999999999999998764 333 368888999999999998654
Q ss_pred CCCCCccceEeeeecCCCCCCceeeccCC-----CCCCCcceeEEeCCEEEEEccCCCCCCCCCCCCccccccCceeecC
Q 024009 79 RYTPEVDHWSLAVKDGKPLEKEWRTEIPI-----PRGGPHRACVVVDDRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYD 153 (274)
Q Consensus 79 ~~~~~~~~~~~~~~~~d~~~~~W~~~~~~-----p~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (274)
....++++ ||+.+++|+.++++ |.+|..|+++..+++|||+||...... ......++
T Consensus 98 ~~~~~v~~-------yd~~t~~W~~~~~~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~-----------~~~~~~~~ 159 (341)
T PLN02153 98 REFSDFYS-------YDTVKNEWTFLTKLDEEGGPEARTFHSMASDENHVYVFGGVSKGGL-----------MKTPERFR 159 (341)
T ss_pred CccCcEEE-------EECCCCEEEEeccCCCCCCCCCceeeEEEEECCEEEEECCccCCCc-----------cCCCcccc
Confidence 43344444 45899999998876 788888999999999999999864310 00111246
Q ss_pred ceEEeC-CCCCeEecCCCC---CCCccceeeEEEeCCEEEEEeccCCCCCCc-ccccccCceEEEEcCCCceEEec---c
Q 024009 154 DVYMLD-DEMKWKVLPSMP---KPDSHIEFAWVLVNNSIVIVGGTTEKHPTT-KKMVLVGEIFQFNLNTLKWHVIG---K 225 (274)
Q Consensus 154 ~~~~~d-~~~~W~~~~~~~---~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~-~~~~~~~~i~~yd~~~~~W~~~~---~ 225 (274)
+++.|| .+++|+.++++. .+|.. ++++..+++|||+||........ .....++++++||+.+++|+++. .
T Consensus 160 ~v~~yd~~~~~W~~l~~~~~~~~~r~~--~~~~~~~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~W~~~~~~g~ 237 (341)
T PLN02153 160 TIEAYNIADGKWVQLPDPGENFEKRGG--AGFAVVQGKIWVVYGFATSILPGGKSDYESNAVQFFDPASGKWTEVETTGA 237 (341)
T ss_pred eEEEEECCCCeEeeCCCCCCCCCCCCc--ceEEEECCeEEEEeccccccccCCccceecCceEEEEcCCCcEEeccccCC
Confidence 889999 899999998764 55665 55688999999999975321100 00012568999999999999985 4
Q ss_pred CCCccceeeeEEEcCEEEEEccccCC--------C--CCCCCceeecCCeeeee
Q 024009 226 LPYRVKTTLAGYWNGWLYFTSGQRDK--------G--PDDPAPRKVHGDMWRTK 269 (274)
Q Consensus 226 ~p~~~~~~~~~~~~~~l~~~GG~~~~--------~--~~~~~~~~~~~~~W~~~ 269 (274)
+|.+|..+++++++++||+|||.... + ..+...|++.++.|+..
T Consensus 238 ~P~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~n~v~~~d~~~~~W~~~ 291 (341)
T PLN02153 238 KPSARSVFAHAVVGKYIIIFGGEVWPDLKGHLGPGTLSNEGYALDTETLVWEKL 291 (341)
T ss_pred CCCCcceeeeEEECCEEEEECcccCCccccccccccccccEEEEEcCccEEEec
Confidence 78899999999999999999997532 1 23556788889999743
No 4
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=100.00 E-value=4.4e-37 Score=275.63 Aligned_cols=234 Identities=18% Similarity=0.336 Sum_probs=203.9
Q ss_pred CCcCceeeEEeCCEEEEEcCcCCCCCCCCCCeeEEEECCCCCeeeCCCCCCCCCCceEEEECCeEEEEcCCC-CCCCCCC
Q 024009 5 MAHSHLGMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLPVPRYAPATQLWRGRLHVMGGSG-ENRYTPE 83 (274)
Q Consensus 5 ~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~-~~~~~~~ 83 (274)
.+|..... ...+.||++||+.... ...+.+..||+.+++|..+++||.+|..++++++++.||++||++ +....++
T Consensus 274 ~~~t~~r~-~~~~~l~~vGG~~~~~--~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~~~~lYv~GG~~~~~~~l~~ 350 (571)
T KOG4441|consen 274 SPRTRPRR-SVSGKLVAVGGYNRQG--QSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAVLNGKLYVVGGYDSGSDRLSS 350 (571)
T ss_pred CCCcccCc-CCCCeEEEECCCCCCC--cccceeEEecCCcCcEeecCCCCcccccccEEEECCEEEEEccccCCCcccce
Confidence 34433333 5678899999997622 467899999999999999999999999999999999999999998 5666666
Q ss_pred ccceEeeeecCCCCCCceeeccCCCCCCCcceeEEeCCEEEEEccCCCCCCCCCCCCccccccCceeecCceEEeC-CCC
Q 024009 84 VDHWSLAVKDGKPLEKEWRTEIPIPRGGPHRACVVVDDRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYDDVYMLD-DEM 162 (274)
Q Consensus 84 ~~~~~~~~~~~d~~~~~W~~~~~~p~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d-~~~ 162 (274)
+++|+ +.+++|..+++|..+|..+++++.+|.||++||.++.. .++.++.|| .++
T Consensus 351 ve~YD-------~~~~~W~~~a~M~~~R~~~~v~~l~g~iYavGG~dg~~-----------------~l~svE~YDp~~~ 406 (571)
T KOG4441|consen 351 VERYD-------PRTNQWTPVAPMNTKRSDFGVAVLDGKLYAVGGFDGEK-----------------SLNSVECYDPVTN 406 (571)
T ss_pred EEEec-------CCCCceeccCCccCccccceeEEECCEEEEEecccccc-----------------ccccEEEecCCCC
Confidence 66665 89999999999999999999999999999999998542 357899999 999
Q ss_pred CeEecCCCCCCCccceeeEEEeCCEEEEEeccCCCCCCcccccccCceEEEEcCCCceEEeccCCCccceeeeEEEcCEE
Q 024009 163 KWKVLPSMPKPDSHIEFAWVLVNNSIVIVGGTTEKHPTTKKMVLVGEIFQFNLNTLKWHVIGKLPYRVKTTLAGYWNGWL 242 (274)
Q Consensus 163 ~W~~~~~~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~i~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~l 242 (274)
+|+.+++|+.+|++ ++++.++++||++||...... .++.+++|||.+++|+.+++|+.+|..+++++++++|
T Consensus 407 ~W~~va~m~~~r~~--~gv~~~~g~iYi~GG~~~~~~------~l~sve~YDP~t~~W~~~~~M~~~R~~~g~a~~~~~i 478 (571)
T KOG4441|consen 407 KWTPVAPMLTRRSG--HGVAVLGGKLYIIGGGDGSSN------CLNSVECYDPETNTWTLIAPMNTRRSGFGVAVLNGKI 478 (571)
T ss_pred cccccCCCCcceee--eEEEEECCEEEEEcCcCCCcc------ccceEEEEcCCCCceeecCCcccccccceEEEECCEE
Confidence 99999999998887 678999999999999877764 4779999999999999999999999999999999999
Q ss_pred EEEccccCCC-CCCCCceeecCCeeeeeeccC
Q 024009 243 YFTSGQRDKG-PDDPAPRKVHGDMWRTKLLLN 273 (274)
Q Consensus 243 ~~~GG~~~~~-~~~~~~~~~~~~~W~~~~~~~ 273 (274)
|++||.++.. ....+.|++.++.|+...+|.
T Consensus 479 YvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~ 510 (571)
T KOG4441|consen 479 YVVGGFDGTSALSSVERYDPETNQWTMVAPMT 510 (571)
T ss_pred EEECCccCCCccceEEEEcCCCCceeEcccCc
Confidence 9999998833 445678999999999987765
No 5
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=100.00 E-value=2.1e-36 Score=256.84 Aligned_cols=230 Identities=17% Similarity=0.234 Sum_probs=181.6
Q ss_pred CCCCCcCceeeEEeCCEEEEEcCcCCCCCCCCCCeeEEEECCCCCe----eeCCCCCCCCCCceEEEECCeEEEEcCCCC
Q 024009 2 PREMAHSHLGMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKW----QDLPPLPVPRYAPATQLWRGRLHVMGGSGE 77 (274)
Q Consensus 2 p~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~d~~~~~W----~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~ 77 (274)
|+|.+|.++++++++++||++||.++.+ .++++++||+.+++| +.++++|.+|..|++++++++|||+||...
T Consensus 58 ~lp~~r~~~~~~~~~~~lyviGG~~~~~---~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~~~~~iYv~GG~~~ 134 (323)
T TIGR03548 58 QLPYEAAYGASVSVENGIYYIGGSNSSE---RFSSVYRITLDESKEELICETIGNLPFTFENGSACYKDGTLYVGGGNRN 134 (323)
T ss_pred cCCccccceEEEEECCEEEEEcCCCCCC---CceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEEECCEEEEEeCcCC
Confidence 5678898888889999999999986533 468999999999998 788999999999999999999999999753
Q ss_pred CCCCCCccceEeeeecCCCCCCceeeccCCCC-CCCcceeEEeCCEEEEEccCCCCCCCCCCCCccccccCceeecCceE
Q 024009 78 NRYTPEVDHWSLAVKDGKPLEKEWRTEIPIPR-GGPHRACVVVDDRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYDDVY 156 (274)
Q Consensus 78 ~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~-~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (274)
....+ +++.||+.+++|+.++++|. +|..++++.++++|||+||.+... ..+++
T Consensus 135 ~~~~~-------~v~~yd~~~~~W~~~~~~p~~~r~~~~~~~~~~~iYv~GG~~~~~------------------~~~~~ 189 (323)
T TIGR03548 135 GKPSN-------KSYLFNLETQEWFELPDFPGEPRVQPVCVKLQNELYVFGGGSNIA------------------YTDGY 189 (323)
T ss_pred CccCc-------eEEEEcCCCCCeeECCCCCCCCCCcceEEEECCEEEEEcCCCCcc------------------ccceE
Confidence 33323 34555699999999998874 677788889999999999975331 24678
Q ss_pred EeC-CCCCeEecCCCC---CCCccce-eeEEEeCCEEEEEeccCCCCCC-------------------------cccccc
Q 024009 157 MLD-DEMKWKVLPSMP---KPDSHIE-FAWVLVNNSIVIVGGTTEKHPT-------------------------TKKMVL 206 (274)
Q Consensus 157 ~~d-~~~~W~~~~~~~---~~~~~~~-~~~~~~~~~l~v~GG~~~~~~~-------------------------~~~~~~ 206 (274)
.|| .+++|+.+++++ .++...+ ++++..+++|||+||....... .+...+
T Consensus 190 ~yd~~~~~W~~~~~~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (323)
T TIGR03548 190 KYSPKKNQWQKVADPTTDSEPISLLGAASIKINESLLLCIGGFNKDVYNDAVIDLATMKDESLKGYKKEYFLKPPEWYNW 269 (323)
T ss_pred EEecCCCeeEECCCCCCCCCceeccceeEEEECCCEEEEECCcCHHHHHHHHhhhhhccchhhhhhHHHHhCCCccccCc
Confidence 899 899999998763 3443322 3345568999999998642100 000112
Q ss_pred cCceEEEEcCCCceEEeccCC-CccceeeeEEEcCEEEEEccccCCCCCCCCce
Q 024009 207 VGEIFQFNLNTLKWHVIGKLP-YRVKTTLAGYWNGWLYFTSGQRDKGPDDPAPR 259 (274)
Q Consensus 207 ~~~i~~yd~~~~~W~~~~~~p-~~~~~~~~~~~~~~l~~~GG~~~~~~~~~~~~ 259 (274)
.+++++||+.+++|+.++++| .+|..++++.++++||++||..+++.+++.+|
T Consensus 270 ~~~v~~yd~~~~~W~~~~~~p~~~r~~~~~~~~~~~iyv~GG~~~pg~rt~~~~ 323 (323)
T TIGR03548 270 NRKILIYNVRTGKWKSIGNSPFFARCGAALLLTGNNIFSINGELKPGVRTPDIY 323 (323)
T ss_pred CceEEEEECCCCeeeEcccccccccCchheEEECCEEEEEeccccCCcCCcCcC
Confidence 468999999999999999887 57888999999999999999999999988764
No 6
>PHA03098 kelch-like protein; Provisional
Probab=100.00 E-value=1.9e-36 Score=273.67 Aligned_cols=234 Identities=21% Similarity=0.314 Sum_probs=195.6
Q ss_pred cCceeeEEeCCEEEEEcCcCCCCCCCCCCeeEEEECCCCCeeeCCCCCCCCCCceEEEECCeEEEEcCCCCCCCCCCccc
Q 024009 7 HSHLGMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLPVPRYAPATQLWRGRLHVMGGSGENRYTPEVDH 86 (274)
Q Consensus 7 r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~ 86 (274)
+.+++++++++.||++||..... ...++++.||+.+++|..++++|.+|..|+++.++++||++||........++++
T Consensus 285 ~~~~~~~~~~~~lyv~GG~~~~~--~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~~~~~~lyv~GG~~~~~~~~~v~~ 362 (534)
T PHA03098 285 VYCFGSVVLNNVIYFIGGMNKNN--LSVNSVVSYDTKTKSWNKVPELIYPRKNPGVTVFNNRIYVIGGIYNSISLNTVES 362 (534)
T ss_pred cccceEEEECCEEEEECCCcCCC--CeeccEEEEeCCCCeeeECCCCCcccccceEEEECCEEEEEeCCCCCEecceEEE
Confidence 44568899999999999986543 3467899999999999999999999999999999999999999864433344444
Q ss_pred eEeeeecCCCCCCceeeccCCCCCCCcceeEEeCCEEEEEccCCCCCCCCCCCCccccccCceeecCceEEeC-CCCCeE
Q 024009 87 WSLAVKDGKPLEKEWRTEIPIPRGGPHRACVVVDDRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYDDVYMLD-DEMKWK 165 (274)
Q Consensus 87 ~~~~~~~~d~~~~~W~~~~~~p~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d-~~~~W~ 165 (274)
||+.+++|+..+++|.+|.+++++.++++||++||..... ..+++++.|| .+++|+
T Consensus 363 -------yd~~~~~W~~~~~lp~~r~~~~~~~~~~~iYv~GG~~~~~----------------~~~~~v~~yd~~t~~W~ 419 (534)
T PHA03098 363 -------WKPGESKWREEPPLIFPRYNPCVVNVNNLIYVIGGISKND----------------ELLKTVECFSLNTNKWS 419 (534)
T ss_pred -------EcCCCCceeeCCCcCcCCccceEEEECCEEEEECCcCCCC----------------cccceEEEEeCCCCeee
Confidence 4589999999999999999999999999999999975431 1257899999 899999
Q ss_pred ecCCCCCCCccceeeEEEeCCEEEEEeccCCCCCCcccccccCceEEEEcCCCceEEeccCCCccceeeeEEEcCEEEEE
Q 024009 166 VLPSMPKPDSHIEFAWVLVNNSIVIVGGTTEKHPTTKKMVLVGEIFQFNLNTLKWHVIGKLPYRVKTTLAGYWNGWLYFT 245 (274)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~i~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~l~~~ 245 (274)
.++++|.+|.. ++++..+++||++||........ ..+.+++||+.+++|+.++++|.+|..++++.++++||++
T Consensus 420 ~~~~~p~~r~~--~~~~~~~~~iyv~GG~~~~~~~~----~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~ 493 (534)
T PHA03098 420 KGSPLPISHYG--GCAIYHDGKIYVIGGISYIDNIK----VYNIVESYNPVTNKWTELSSLNFPRINASLCIFNNKIYVV 493 (534)
T ss_pred ecCCCCccccC--ceEEEECCEEEEECCccCCCCCc----ccceEEEecCCCCceeeCCCCCcccccceEEEECCEEEEE
Confidence 99999999887 55688999999999976543211 2457999999999999999999999999999999999999
Q ss_pred ccccCCC-CCCCCceeecCCeeeeeec
Q 024009 246 SGQRDKG-PDDPAPRKVHGDMWRTKLL 271 (274)
Q Consensus 246 GG~~~~~-~~~~~~~~~~~~~W~~~~~ 271 (274)
||.+... ..+...|++.++.|+...+
T Consensus 494 GG~~~~~~~~~v~~yd~~~~~W~~~~~ 520 (534)
T PHA03098 494 GGDKYEYYINEIEVYDDKTNTWTLFCK 520 (534)
T ss_pred cCCcCCcccceeEEEeCCCCEEEecCC
Confidence 9988655 5567889999999985443
No 7
>PHA02790 Kelch-like protein; Provisional
Probab=100.00 E-value=9.4e-36 Score=264.30 Aligned_cols=208 Identities=16% Similarity=0.274 Sum_probs=179.7
Q ss_pred eEEeCCEEEEEcCcCCCCCCCCCCeeEEEECCCCCeeeCCCCCCCCCCceEEEECCeEEEEcCCCCCCCCCCccceEeee
Q 024009 12 MVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLPVPRYAPATQLWRGRLHVMGGSGENRYTPEVDHWSLAV 91 (274)
Q Consensus 12 ~~~~~~~iyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~ 91 (274)
++.+++.||++||..+. ...+.++.||+.+++|..+++|+.+|..++++.++++||++||.... .+++.|+
T Consensus 267 ~~~~~~~lyviGG~~~~---~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v~~~~~iYviGG~~~~---~sve~yd--- 337 (480)
T PHA02790 267 STHVGEVVYLIGGWMNN---EIHNNAIAVNYISNNWIPIPPMNSPRLYASGVPANNKLYVVGGLPNP---TSVERWF--- 337 (480)
T ss_pred eEEECCEEEEEcCCCCC---CcCCeEEEEECCCCEEEECCCCCchhhcceEEEECCEEEEECCcCCC---CceEEEE---
Confidence 44589999999998543 35688999999999999999999999999999999999999997532 4455554
Q ss_pred ecCCCCCCceeeccCCCCCCCcceeEEeCCEEEEEccCCCCCCCCCCCCccccccCceeecCceEEeC-CCCCeEecCCC
Q 024009 92 KDGKPLEKEWRTEIPIPRGGPHRACVVVDDRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYDDVYMLD-DEMKWKVLPSM 170 (274)
Q Consensus 92 ~~~d~~~~~W~~~~~~p~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d-~~~~W~~~~~~ 170 (274)
+.+++|..+++||.+|.++++++++++||++||.... .+.++.|| .+++|+.+++|
T Consensus 338 ----p~~n~W~~~~~l~~~r~~~~~~~~~g~IYviGG~~~~-------------------~~~ve~ydp~~~~W~~~~~m 394 (480)
T PHA02790 338 ----HGDAAWVNMPSLLKPRCNPAVASINNVIYVIGGHSET-------------------DTTTEYLLPNHDQWQFGPST 394 (480)
T ss_pred ----CCCCeEEECCCCCCCCcccEEEEECCEEEEecCcCCC-------------------CccEEEEeCCCCEEEeCCCC
Confidence 8899999999999999999999999999999997533 13567788 89999999999
Q ss_pred CCCCccceeeEEEeCCEEEEEeccCCCCCCcccccccCceEEEEcCCCceEEeccCCCccceeeeEEEcCEEEEEccccC
Q 024009 171 PKPDSHIEFAWVLVNNSIVIVGGTTEKHPTTKKMVLVGEIFQFNLNTLKWHVIGKLPYRVKTTLAGYWNGWLYFTSGQRD 250 (274)
Q Consensus 171 ~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~i~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~l~~~GG~~~ 250 (274)
+.+|.. ++++..+++||++|| .+++||+++++|+.+++||.+|..+++++++++||++||...
T Consensus 395 ~~~r~~--~~~~~~~~~IYv~GG---------------~~e~ydp~~~~W~~~~~m~~~r~~~~~~v~~~~IYviGG~~~ 457 (480)
T PHA02790 395 YYPHYK--SCALVFGRRLFLVGR---------------NAEFYCESSNTWTLIDDPIYPRDNPELIIVDNKLLLIGGFYR 457 (480)
T ss_pred CCcccc--ceEEEECCEEEEECC---------------ceEEecCCCCcEeEcCCCCCCccccEEEEECCEEEEECCcCC
Confidence 999987 456889999999997 367899999999999999999999999999999999999864
Q ss_pred CC-CCCCCceeecCCeeee
Q 024009 251 KG-PDDPAPRKVHGDMWRT 268 (274)
Q Consensus 251 ~~-~~~~~~~~~~~~~W~~ 268 (274)
.. ....+.|++..|.|+.
T Consensus 458 ~~~~~~ve~Yd~~~~~W~~ 476 (480)
T PHA02790 458 GSYIDTIEVYNNRTYSWNI 476 (480)
T ss_pred CcccceEEEEECCCCeEEe
Confidence 33 4567899999999974
No 8
>PLN02193 nitrile-specifier protein
Probab=100.00 E-value=5.1e-35 Score=258.95 Aligned_cols=232 Identities=16% Similarity=0.243 Sum_probs=184.7
Q ss_pred CCCCcCceeeEEeCCEEEEEcCcCCCCCCCCCCeeEEEECCCCCeeeCCC---CCC-CCCCceEEEECCeEEEEcCCCCC
Q 024009 3 REMAHSHLGMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPP---LPV-PRYAPATQLWRGRLHVMGGSGEN 78 (274)
Q Consensus 3 ~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~---~~~-~r~~~~~~~~~~~iyv~GG~~~~ 78 (274)
.|.+|.+|++++++++||++||...... ...+++|+||+.+++|+.+++ +|. +|..|+++.++++||||||....
T Consensus 162 ~P~pR~~h~~~~~~~~iyv~GG~~~~~~-~~~~~v~~yD~~~~~W~~~~~~g~~P~~~~~~~~~v~~~~~lYvfGG~~~~ 240 (470)
T PLN02193 162 GPGLRCSHGIAQVGNKIYSFGGEFTPNQ-PIDKHLYVFDLETRTWSISPATGDVPHLSCLGVRMVSIGSTLYVFGGRDAS 240 (470)
T ss_pred CCCCccccEEEEECCEEEEECCcCCCCC-CeeCcEEEEECCCCEEEeCCCCCCCCCCcccceEEEEECCEEEEECCCCCC
Confidence 4789999999999999999999854332 234789999999999998864 343 35688889999999999998654
Q ss_pred CCCCCccceEeeeecCCCCCCceeeccCC---CCCCCcceeEEeCCEEEEEccCCCCCCCCCCCCccccccCceeecCce
Q 024009 79 RYTPEVDHWSLAVKDGKPLEKEWRTEIPI---PRGGPHRACVVVDDRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYDDV 155 (274)
Q Consensus 79 ~~~~~~~~~~~~~~~~d~~~~~W~~~~~~---p~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (274)
...++ ++.||+.+++|+.++++ |.+|..|+++..+++|||+||..... .++++
T Consensus 241 ~~~nd-------v~~yD~~t~~W~~l~~~~~~P~~R~~h~~~~~~~~iYv~GG~~~~~-----------------~~~~~ 296 (470)
T PLN02193 241 RQYNG-------FYSFDTTTNEWKLLTPVEEGPTPRSFHSMAADEENVYVFGGVSATA-----------------RLKTL 296 (470)
T ss_pred CCCcc-------EEEEECCCCEEEEcCcCCCCCCCccceEEEEECCEEEEECCCCCCC-----------------CcceE
Confidence 33333 44445899999999887 78898899999999999999986431 24688
Q ss_pred EEeC-CCCCeEecCC---CCCCCccceeeEEEeCCEEEEEeccCCCCCCcccccccCceEEEEcCCCceEEecc---CCC
Q 024009 156 YMLD-DEMKWKVLPS---MPKPDSHIEFAWVLVNNSIVIVGGTTEKHPTTKKMVLVGEIFQFNLNTLKWHVIGK---LPY 228 (274)
Q Consensus 156 ~~~d-~~~~W~~~~~---~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~i~~yd~~~~~W~~~~~---~p~ 228 (274)
+.|| .+++|+.+++ ++.+|.. ++++.++++||++||.... .++++++||+++++|+.+.+ .|.
T Consensus 297 ~~yd~~t~~W~~~~~~~~~~~~R~~--~~~~~~~gkiyviGG~~g~--------~~~dv~~yD~~t~~W~~~~~~g~~P~ 366 (470)
T PLN02193 297 DSYNIVDKKWFHCSTPGDSFSIRGG--AGLEVVQGKVWVVYGFNGC--------EVDDVHYYDPVQDKWTQVETFGVRPS 366 (470)
T ss_pred EEEECCCCEEEeCCCCCCCCCCCCC--cEEEEECCcEEEEECCCCC--------ccCceEEEECCCCEEEEeccCCCCCC
Confidence 9999 8999998875 5566766 5567889999999997543 24689999999999999854 488
Q ss_pred ccceeeeEEEcCEEEEEccccCCC----------CCCCCceeecCCeeeee
Q 024009 229 RVKTTLAGYWNGWLYFTSGQRDKG----------PDDPAPRKVHGDMWRTK 269 (274)
Q Consensus 229 ~~~~~~~~~~~~~l~~~GG~~~~~----------~~~~~~~~~~~~~W~~~ 269 (274)
+|..++++.++++||+|||..... ..+..+|++.++.|+..
T Consensus 367 ~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~ndv~~~D~~t~~W~~~ 417 (470)
T PLN02193 367 ERSVFASAAVGKHIVIFGGEIAMDPLAHVGPGQLTDGTFALDTETLQWERL 417 (470)
T ss_pred CcceeEEEEECCEEEEECCccCCccccccCccceeccEEEEEcCcCEEEEc
Confidence 999999999999999999986421 12456788888888844
No 9
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=100.00 E-value=1.8e-34 Score=247.42 Aligned_cols=237 Identities=21% Similarity=0.350 Sum_probs=174.0
Q ss_pred CCC-CCcCceeeEEeCCEEEEEcCcCCCC---CCCCCCeeEEEECCCCCeeeCC-CCCCCCCCceEE-EECCeEEEEcCC
Q 024009 2 PRE-MAHSHLGMVTDGRYIYVVTGQYGPQ---CRGPTAHTFVLDTETKKWQDLP-PLPVPRYAPATQ-LWRGRLHVMGGS 75 (274)
Q Consensus 2 p~~-~~r~~~~~~~~~~~iyv~GG~~~~~---~~~~~~~~~~~d~~~~~W~~~~-~~~~~r~~~~~~-~~~~~iyv~GG~ 75 (274)
|+| .+|.++++++++++|||+||..... ....++++++||+.+++|+.++ ++|.+|..++++ .++++||++||.
T Consensus 48 ~~p~~~R~~~~~~~~~~~iYv~GG~~~~~~~~~~~~~~~v~~Yd~~~~~W~~~~~~~p~~~~~~~~~~~~~g~IYviGG~ 127 (346)
T TIGR03547 48 DFPGGPRNQAVAAAIDGKLYVFGGIGKANSEGSPQVFDDVYRYDPKKNSWQKLDTRSPVGLLGASGFSLHNGQAYFTGGV 127 (346)
T ss_pred CCCCCCcccceEEEECCEEEEEeCCCCCCCCCcceecccEEEEECCCCEEecCCCCCCCcccceeEEEEeCCEEEEEcCc
Confidence 455 5899999999999999999985322 1124789999999999999997 567777777776 679999999997
Q ss_pred CCCCC---CCCc------------------------cceEeeeecCCCCCCceeeccCCCC-CCCcceeEEeCCEEEEEc
Q 024009 76 GENRY---TPEV------------------------DHWSLAVKDGKPLEKEWRTEIPIPR-GGPHRACVVVDDRLLVIG 127 (274)
Q Consensus 76 ~~~~~---~~~~------------------------~~~~~~~~~~d~~~~~W~~~~~~p~-~~~~~~~~~~~~~iyv~G 127 (274)
....+ ...+ ..+..++..||+.+++|+.++++|. ++.+++++.++++|||+|
T Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~YDp~t~~W~~~~~~p~~~r~~~~~~~~~~~iyv~G 207 (346)
T TIGR03547 128 NKNIFDGYFADLSAADKDSEPKDKLIAAYFSQPPEDYFWNKNVLSYDPSTNQWRNLGENPFLGTAGSAIVHKGNKLLLIN 207 (346)
T ss_pred ChHHHHHHHhhHhhcCccchhhhhhHHHHhCCChhHcCccceEEEEECCCCceeECccCCCCcCCCceEEEECCEEEEEe
Confidence 53210 0000 0011245566699999999999986 678888999999999999
Q ss_pred cCCCCCCCCCCCCccccccCceeecCce--EEeC-CCCCeEecCCCCCCCcc-----ceeeEEEeCCEEEEEeccCCCCC
Q 024009 128 GQEGDFMAKPGSPIFKCSRRNEVVYDDV--YMLD-DEMKWKVLPSMPKPDSH-----IEFAWVLVNNSIVIVGGTTEKHP 199 (274)
Q Consensus 128 G~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~d-~~~~W~~~~~~~~~~~~-----~~~~~~~~~~~l~v~GG~~~~~~ 199 (274)
|..... ....++ |.++ .+++|+.+++||.+|.. .+++++..+++|||+||......
T Consensus 208 G~~~~~----------------~~~~~~~~y~~~~~~~~W~~~~~m~~~r~~~~~~~~~~~a~~~~~~Iyv~GG~~~~~~ 271 (346)
T TIGR03547 208 GEIKPG----------------LRTAEVKQYLFTGGKLEWNKLPPLPPPKSSSQEGLAGAFAGISNGVLLVAGGANFPGA 271 (346)
T ss_pred eeeCCC----------------ccchheEEEEecCCCceeeecCCCCCCCCCccccccEEeeeEECCEEEEeecCCCCCc
Confidence 975331 012344 4445 56799999999887631 23446789999999999753211
Q ss_pred C---------cc-cccccCceEEEEcCCCceEEeccCCCccceeeeEEEcCEEEEEccccCCCCC
Q 024009 200 T---------TK-KMVLVGEIFQFNLNTLKWHVIGKLPYRVKTTLAGYWNGWLYFTSGQRDKGPD 254 (274)
Q Consensus 200 ~---------~~-~~~~~~~i~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~l~~~GG~~~~~~~ 254 (274)
. .. ....+..+++||+++++|+.+.+||.+|..+++++++++||++||....+..
T Consensus 272 ~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~~~lp~~~~~~~~~~~~~~iyv~GG~~~~~~~ 336 (346)
T TIGR03547 272 QENYKNGKLYAHEGLIKAWSSEVYALDNGKWSKVGKLPQGLAYGVSVSWNNGVLLIGGENSGGKA 336 (346)
T ss_pred hhhhhcCCccccCCCCceeEeeEEEecCCcccccCCCCCCceeeEEEEcCCEEEEEeccCCCCCE
Confidence 0 00 0001246899999999999999999999988888899999999998665543
No 10
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=100.00 E-value=3.4e-34 Score=245.70 Aligned_cols=255 Identities=20% Similarity=0.268 Sum_probs=181.4
Q ss_pred CCCCCcCceeeEEeCCEEEEEcCcCCCCCCCCCCeeEEEEC--CCCCeeeCCCCC-CCCCCceEEEECCeEEEEcCCCCC
Q 024009 2 PREMAHSHLGMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDT--ETKKWQDLPPLP-VPRYAPATQLWRGRLHVMGGSGEN 78 (274)
Q Consensus 2 p~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~d~--~~~~W~~~~~~~-~~r~~~~~~~~~~~iyv~GG~~~~ 78 (274)
|+|.+|..+++++++++|||+||.. .+++++||+ .+++|..+++|| .+|..++++.++++|||+||....
T Consensus 3 ~lp~~~~~~~~~~~~~~vyv~GG~~-------~~~~~~~d~~~~~~~W~~l~~~p~~~R~~~~~~~~~~~iYv~GG~~~~ 75 (346)
T TIGR03547 3 DLPVGFKNGTGAIIGDKVYVGLGSA-------GTSWYKLDLKKPSKGWQKIADFPGGPRNQAVAAAIDGKLYVFGGIGKA 75 (346)
T ss_pred CCCccccCceEEEECCEEEEEcccc-------CCeeEEEECCCCCCCceECCCCCCCCcccceEEEECCEEEEEeCCCCC
Confidence 5778998888989999999999963 257899996 578999999999 589999999999999999997532
Q ss_pred CCCCCccceEeeeecCCCCCCceeecc-CCCCCCCcceeE-EeCCEEEEEccCCCCCCCC-------CC----------C
Q 024009 79 RYTPEVDHWSLAVKDGKPLEKEWRTEI-PIPRGGPHRACV-VVDDRLLVIGGQEGDFMAK-------PG----------S 139 (274)
Q Consensus 79 ~~~~~~~~~~~~~~~~d~~~~~W~~~~-~~p~~~~~~~~~-~~~~~iyv~GG~~~~~~~~-------~~----------~ 139 (274)
....... ...+++.||+.+++|+.++ ++|+.+.+++++ ..+++||++||.+...... .+ .
T Consensus 76 ~~~~~~~-~~~~v~~Yd~~~~~W~~~~~~~p~~~~~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (346)
T TIGR03547 76 NSEGSPQ-VFDDVYRYDPKKNSWQKLDTRSPVGLLGASGFSLHNGQAYFTGGVNKNIFDGYFADLSAADKDSEPKDKLIA 154 (346)
T ss_pred CCCCcce-ecccEEEEECCCCEEecCCCCCCCcccceeEEEEeCCEEEEEcCcChHHHHHHHhhHhhcCccchhhhhhHH
Confidence 1100000 1113455569999999986 577888777666 7899999999976320000 00 0
Q ss_pred CccccccCceeecCceEEeC-CCCCeEecCCCCC-CCccceeeEEEeCCEEEEEeccCCCCCCcccccccCceEEEE--c
Q 024009 140 PIFKCSRRNEVVYDDVYMLD-DEMKWKVLPSMPK-PDSHIEFAWVLVNNSIVIVGGTTEKHPTTKKMVLVGEIFQFN--L 215 (274)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~d-~~~~W~~~~~~~~-~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~i~~yd--~ 215 (274)
.++........++++++.|| .+++|+.+++||. ++.. ++++..+++|||+||...... ...+++.|| +
T Consensus 155 ~~~~~~~~~~~~~~~v~~YDp~t~~W~~~~~~p~~~r~~--~~~~~~~~~iyv~GG~~~~~~------~~~~~~~y~~~~ 226 (346)
T TIGR03547 155 AYFSQPPEDYFWNKNVLSYDPSTNQWRNLGENPFLGTAG--SAIVHKGNKLLLINGEIKPGL------RTAEVKQYLFTG 226 (346)
T ss_pred HHhCCChhHcCccceEEEEECCCCceeECccCCCCcCCC--ceEEEECCEEEEEeeeeCCCc------cchheEEEEecC
Confidence 00000000001247899999 9999999999986 4655 566889999999999754321 123565555 5
Q ss_pred CCCceEEeccCCCcc-------ceeeeEEEcCEEEEEccccCCCC------------------CCCCceeecCCeeeeee
Q 024009 216 NTLKWHVIGKLPYRV-------KTTLAGYWNGWLYFTSGQRDKGP------------------DDPAPRKVHGDMWRTKL 270 (274)
Q Consensus 216 ~~~~W~~~~~~p~~~-------~~~~~~~~~~~l~~~GG~~~~~~------------------~~~~~~~~~~~~W~~~~ 270 (274)
++++|+++++||.+| ..+.++.++++||++||.+..+. ...++|++..+.|+...
T Consensus 227 ~~~~W~~~~~m~~~r~~~~~~~~~~~a~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~~ 306 (346)
T TIGR03547 227 GKLEWNKLPPLPPPKSSSQEGLAGAFAGISNGVLLVAGGANFPGAQENYKNGKLYAHEGLIKAWSSEVYALDNGKWSKVG 306 (346)
T ss_pred CCceeeecCCCCCCCCCccccccEEeeeEECCEEEEeecCCCCCchhhhhcCCccccCCCCceeEeeEEEecCCcccccC
Confidence 777999999998765 24557788999999999864221 24578899999998776
Q ss_pred cc
Q 024009 271 LL 272 (274)
Q Consensus 271 ~~ 272 (274)
+|
T Consensus 307 ~l 308 (346)
T TIGR03547 307 KL 308 (346)
T ss_pred CC
Confidence 54
No 11
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=100.00 E-value=1.8e-33 Score=238.80 Aligned_cols=234 Identities=17% Similarity=0.208 Sum_probs=178.8
Q ss_pred CCcCceeeEEeCCEEEEEcCcCCCCC-------CCCCCeeEEEECCC--CCeeeCCCCCCCCCCceEEEECCeEEEEcCC
Q 024009 5 MAHSHLGMVTDGRYIYVVTGQYGPQC-------RGPTAHTFVLDTET--KKWQDLPPLPVPRYAPATQLWRGRLHVMGGS 75 (274)
Q Consensus 5 ~~r~~~~~~~~~~~iyv~GG~~~~~~-------~~~~~~~~~~d~~~--~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~ 75 (274)
..+.++.++++++.|||+||.+.++. ....+++++|+... .+|..+++||.+|..++++.++++||++||.
T Consensus 2 ~~~~g~~~~~~~~~l~v~GG~~~~~~~~~~~g~~~~~~~v~~~~~~~~~~~W~~~~~lp~~r~~~~~~~~~~~lyviGG~ 81 (323)
T TIGR03548 2 LGVAGCYAGIIGDYILVAGGCNFPEDPLAEGGKKKNYKGIYIAKDENSNLKWVKDGQLPYEAAYGASVSVENGIYYIGGS 81 (323)
T ss_pred CceeeEeeeEECCEEEEeeccCCCCCchhhCCcEEeeeeeEEEecCCCceeEEEcccCCccccceEEEEECCEEEEEcCC
Confidence 46778999999999999999876531 12456888886333 3799999999999988889999999999998
Q ss_pred CCCCCCCCccceEeeeecCCCCCCce----eeccCCCCCCCcceeEEeCCEEEEEccCCCCCCCCCCCCccccccCceee
Q 024009 76 GENRYTPEVDHWSLAVKDGKPLEKEW----RTEIPIPRGGPHRACVVVDDRLLVIGGQEGDFMAKPGSPIFKCSRRNEVV 151 (274)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~d~~~~~W----~~~~~~p~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~ 151 (274)
.......++++|+ +.+++| +.++++|.++..+++++++++|||+||.... ..
T Consensus 82 ~~~~~~~~v~~~d-------~~~~~w~~~~~~~~~lp~~~~~~~~~~~~~~iYv~GG~~~~-----------------~~ 137 (323)
T TIGR03548 82 NSSERFSSVYRIT-------LDESKEELICETIGNLPFTFENGSACYKDGTLYVGGGNRNG-----------------KP 137 (323)
T ss_pred CCCCCceeEEEEE-------EcCCceeeeeeEcCCCCcCccCceEEEECCEEEEEeCcCCC-----------------cc
Confidence 6544444444444 556666 7889999999889999999999999997432 11
Q ss_pred cCceEEeC-CCCCeEecCCCCC-CCccceeeEEEeCCEEEEEeccCCCCCCcccccccCceEEEEcCCCceEEeccCC--
Q 024009 152 YDDVYMLD-DEMKWKVLPSMPK-PDSHIEFAWVLVNNSIVIVGGTTEKHPTTKKMVLVGEIFQFNLNTLKWHVIGKLP-- 227 (274)
Q Consensus 152 ~~~~~~~d-~~~~W~~~~~~~~-~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~i~~yd~~~~~W~~~~~~p-- 227 (274)
.++++.|| .+++|+.++++|. +|.. ++++..+++|||+||..... ..++++||+++++|+.+.+++
T Consensus 138 ~~~v~~yd~~~~~W~~~~~~p~~~r~~--~~~~~~~~~iYv~GG~~~~~--------~~~~~~yd~~~~~W~~~~~~~~~ 207 (323)
T TIGR03548 138 SNKSYLFNLETQEWFELPDFPGEPRVQ--PVCVKLQNELYVFGGGSNIA--------YTDGYKYSPKKNQWQKVADPTTD 207 (323)
T ss_pred CceEEEEcCCCCCeeECCCCCCCCCCc--ceEEEECCEEEEEcCCCCcc--------ccceEEEecCCCeeEECCCCCCC
Confidence 47899999 8999999999885 5655 45688999999999975432 236899999999999987653
Q ss_pred ---Cccceee-eEEEcCEEEEEccccCCC---------------------------------CCCCCceeecCCeeeeee
Q 024009 228 ---YRVKTTL-AGYWNGWLYFTSGQRDKG---------------------------------PDDPAPRKVHGDMWRTKL 270 (274)
Q Consensus 228 ---~~~~~~~-~~~~~~~l~~~GG~~~~~---------------------------------~~~~~~~~~~~~~W~~~~ 270 (274)
..+..++ ++..+++||++||.+... .++..+|++.++.|+...
T Consensus 208 ~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~ 287 (323)
T TIGR03548 208 SEPISLLGAASIKINESLLLCIGGFNKDVYNDAVIDLATMKDESLKGYKKEYFLKPPEWYNWNRKILIYNVRTGKWKSIG 287 (323)
T ss_pred CCceeccceeEEEECCCEEEEECCcCHHHHHHHHhhhhhccchhhhhhHHHHhCCCccccCcCceEEEEECCCCeeeEcc
Confidence 2333333 444579999999986421 245678999999998755
Q ss_pred cc
Q 024009 271 LL 272 (274)
Q Consensus 271 ~~ 272 (274)
++
T Consensus 288 ~~ 289 (323)
T TIGR03548 288 NS 289 (323)
T ss_pred cc
Confidence 43
No 12
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]
Probab=100.00 E-value=1.4e-34 Score=225.32 Aligned_cols=225 Identities=20% Similarity=0.331 Sum_probs=189.0
Q ss_pred CCCcCceeeEEeCCEEEEEcCcCCCCCCCCCCeeEEEECCCCCeeeC---CCCCCCCCCceEEEECCeEEEEcCCCCCCC
Q 024009 4 EMAHSHLGMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDL---PPLPVPRYAPATQLWRGRLHVMGGSGENRY 80 (274)
Q Consensus 4 ~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~---~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~ 80 (274)
|-.|++|+++..++++|+.||++..+ ...+.++.||+++++|.+. .-+|.+|.+|+++++++.+|||||+.
T Consensus 76 PyqRYGHtvV~y~d~~yvWGGRND~e--gaCN~Ly~fDp~t~~W~~p~v~G~vPgaRDGHsAcV~gn~MyiFGGye---- 149 (392)
T KOG4693|consen 76 PYQRYGHTVVEYQDKAYVWGGRNDDE--GACNLLYEFDPETNVWKKPEVEGFVPGARDGHSACVWGNQMYIFGGYE---- 149 (392)
T ss_pred chhhcCceEEEEcceEEEEcCccCcc--cccceeeeeccccccccccceeeecCCccCCceeeEECcEEEEecChH----
Confidence 45799999999999999999998765 3568899999999999886 36788999999999999999999975
Q ss_pred CCCccceEeeeecCCCCCCceeeccC---CCCCCCcceeEEeCCEEEEEccCCCCCCCCCCCCccccccCceeecCceEE
Q 024009 81 TPEVDHWSLAVKDGKPLEKEWRTEIP---IPRGGPHRACVVVDDRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYDDVYM 157 (274)
Q Consensus 81 ~~~~~~~~~~~~~~d~~~~~W~~~~~---~p~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (274)
.+.+.|+.+++..|..+.+|+.+.+ .|+.|..|++.++++.+||+||..+.... -....+.+...+..
T Consensus 150 -~~a~~FS~d~h~ld~~TmtWr~~~Tkg~PprwRDFH~a~~~~~~MYiFGGR~D~~gp--------fHs~~e~Yc~~i~~ 220 (392)
T KOG4693|consen 150 -EDAQRFSQDTHVLDFATMTWREMHTKGDPPRWRDFHTASVIDGMMYIFGGRSDESGP--------FHSIHEQYCDTIMA 220 (392)
T ss_pred -HHHHhhhccceeEeccceeeeehhccCCCchhhhhhhhhhccceEEEeccccccCCC--------ccchhhhhcceeEE
Confidence 4456677777777799999998654 67888889999999999999998765321 12346677788899
Q ss_pred eC-CCCCeEecCC---CCCCCccceeeEEEeCCEEEEEeccCCCCCCcccccccCceEEEEcCCCceEEe---ccCCCcc
Q 024009 158 LD-DEMKWKVLPS---MPKPDSHIEFAWVLVNNSIVIVGGTTEKHPTTKKMVLVGEIFQFNLNTLKWHVI---GKLPYRV 230 (274)
Q Consensus 158 ~d-~~~~W~~~~~---~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~i~~yd~~~~~W~~~---~~~p~~~ 230 (274)
+| .+..|...++ .|.+|.. +++...+++||++||+++.... -.+++|+|||++..|+.| ++-|.+|
T Consensus 221 ld~~T~aW~r~p~~~~~P~GRRS--HS~fvYng~~Y~FGGYng~ln~-----HfndLy~FdP~t~~W~~I~~~Gk~P~aR 293 (392)
T KOG4693|consen 221 LDLATGAWTRTPENTMKPGGRRS--HSTFVYNGKMYMFGGYNGTLNV-----HFNDLYCFDPKTSMWSVISVRGKYPSAR 293 (392)
T ss_pred EeccccccccCCCCCcCCCcccc--cceEEEcceEEEecccchhhhh-----hhcceeecccccchheeeeccCCCCCcc
Confidence 99 9999998874 4666666 5678999999999999876431 367999999999999987 7789999
Q ss_pred ceeeeEEEcCEEEEEccccC
Q 024009 231 KTTLAGYWNGWLYFTSGQRD 250 (274)
Q Consensus 231 ~~~~~~~~~~~l~~~GG~~~ 250 (274)
+.+++++.++++|+|||..-
T Consensus 294 RRqC~~v~g~kv~LFGGTsP 313 (392)
T KOG4693|consen 294 RRQCSVVSGGKVYLFGGTSP 313 (392)
T ss_pred cceeEEEECCEEEEecCCCC
Confidence 99999999999999999654
No 13
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=100.00 E-value=2e-33 Score=242.87 Aligned_cols=231 Identities=20% Similarity=0.303 Sum_probs=170.8
Q ss_pred CCcCceeeEEeCCEEEEEcCcCC-CCC--CCCCCeeEEEECCCCCeeeCCC-CCCCCCCceEEE-ECCeEEEEcCCCCCC
Q 024009 5 MAHSHLGMVTDGRYIYVVTGQYG-PQC--RGPTAHTFVLDTETKKWQDLPP-LPVPRYAPATQL-WRGRLHVMGGSGENR 79 (274)
Q Consensus 5 ~~r~~~~~~~~~~~iyv~GG~~~-~~~--~~~~~~~~~~d~~~~~W~~~~~-~~~~r~~~~~~~-~~~~iyv~GG~~~~~ 79 (274)
.+|.++++++++++|||+||... .+. ...++++++||+.+++|+.+++ .|.++..|+++. .+++||++||.....
T Consensus 73 ~~r~~~~~v~~~~~IYV~GG~~~~~~~~~~~~~~~v~~YD~~~n~W~~~~~~~p~~~~~~~~~~~~~~~IYv~GG~~~~~ 152 (376)
T PRK14131 73 GPREQAVAAFIDGKLYVFGGIGKTNSEGSPQVFDDVYKYDPKTNSWQKLDTRSPVGLAGHVAVSLHNGKAYITGGVNKNI 152 (376)
T ss_pred CCcccceEEEECCEEEEEcCCCCCCCCCceeEcccEEEEeCCCCEEEeCCCCCCCcccceEEEEeeCCEEEEECCCCHHH
Confidence 48999999999999999999864 111 1346899999999999999985 467777788777 799999999975310
Q ss_pred CC---------------------------CCccceEeeeecCCCCCCceeeccCCCC-CCCcceeEEeCCEEEEEccCCC
Q 024009 80 YT---------------------------PEVDHWSLAVKDGKPLEKEWRTEIPIPR-GGPHRACVVVDDRLLVIGGQEG 131 (274)
Q Consensus 80 ~~---------------------------~~~~~~~~~~~~~d~~~~~W~~~~~~p~-~~~~~~~~~~~~~iyv~GG~~~ 131 (274)
+. .....+..+++.||+.+++|+.++++|. ++.+++++.++++|||+||...
T Consensus 153 ~~~~~~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~YD~~t~~W~~~~~~p~~~~~~~a~v~~~~~iYv~GG~~~ 232 (376)
T PRK14131 153 FDGYFEDLAAAGKDKTPKDKINDAYFDKKPEDYFFNKEVLSYDPSTNQWKNAGESPFLGTAGSAVVIKGNKLWLINGEIK 232 (376)
T ss_pred HHHHHhhhhhcccchhhhhhhHHHHhcCChhhcCcCceEEEEECCCCeeeECCcCCCCCCCcceEEEECCEEEEEeeeEC
Confidence 00 0000122356677799999999999986 6778888999999999999753
Q ss_pred CCCCCCCCCccccccCceeecCceE--EeC-CCCCeEecCCCCCCCcc------ceeeEEEeCCEEEEEeccCCCCCC--
Q 024009 132 DFMAKPGSPIFKCSRRNEVVYDDVY--MLD-DEMKWKVLPSMPKPDSH------IEFAWVLVNNSIVIVGGTTEKHPT-- 200 (274)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~d-~~~~W~~~~~~~~~~~~------~~~~~~~~~~~l~v~GG~~~~~~~-- 200 (274)
... + ..++| .|| .+++|+.+++||.+|.. .++.++..+++|||+||.......
T Consensus 233 ~~~-----------~-----~~~~~~~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~~~a~~~~~~iyv~GG~~~~~~~~~ 296 (376)
T PRK14131 233 PGL-----------R-----TDAVKQGKFTGNNLKWQKLPDLPPAPGGSSQEGVAGAFAGYSNGVLLVAGGANFPGAREN 296 (376)
T ss_pred CCc-----------C-----ChhheEEEecCCCcceeecCCCCCCCcCCcCCccceEeceeECCEEEEeeccCCCCChhh
Confidence 311 1 23444 456 67899999999887642 223357789999999997542110
Q ss_pred -------c-ccccccCceEEEEcCCCceEEeccCCCccceeeeEEEcCEEEEEccccCC
Q 024009 201 -------T-KKMVLVGEIFQFNLNTLKWHVIGKLPYRVKTTLAGYWNGWLYFTSGQRDK 251 (274)
Q Consensus 201 -------~-~~~~~~~~i~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~l~~~GG~~~~ 251 (274)
. ........+++||+++++|+.+++||.+|..++++.++++||++||....
T Consensus 297 ~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~~~lp~~r~~~~av~~~~~iyv~GG~~~~ 355 (376)
T PRK14131 297 YQNGKLYAHEGLKKSWSDEIYALVNGKWQKVGELPQGLAYGVSVSWNNGVLLIGGETAG 355 (376)
T ss_pred hhcCCcccccCCcceeehheEEecCCcccccCcCCCCccceEEEEeCCEEEEEcCCCCC
Confidence 0 00000125789999999999999999999999999999999999997653
No 14
>PLN02153 epithiospecifier protein
Probab=100.00 E-value=6e-33 Score=237.28 Aligned_cols=240 Identities=18% Similarity=0.279 Sum_probs=171.8
Q ss_pred CceeeEEeCCEEEEEcCcCCCCCCCCCCeeEEEECCCCCeeeCCCC-----CCCCCCceEEEECCeEEEEcCCCCCCCCC
Q 024009 8 SHLGMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPL-----PVPRYAPATQLWRGRLHVMGGSGENRYTP 82 (274)
Q Consensus 8 ~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~-----~~~r~~~~~~~~~~~iyv~GG~~~~~~~~ 82 (274)
.++++++++++||++||..... .++++++||+.+++|+.++++ |.+|..|+++..+++|||+||........
T Consensus 77 ~~~~~~~~~~~iyv~GG~~~~~---~~~~v~~yd~~t~~W~~~~~~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~ 153 (341)
T PLN02153 77 LGVRMVAVGTKLYIFGGRDEKR---EFSDFYSYDTVKNEWTFLTKLDEEGGPEARTFHSMASDENHVYVFGGVSKGGLMK 153 (341)
T ss_pred CceEEEEECCEEEEECCCCCCC---ccCcEEEEECCCCEEEEeccCCCCCCCCCceeeEEEEECCEEEEECCccCCCccC
Confidence 4788999999999999986532 468999999999999999877 78899999999999999999986432211
Q ss_pred CccceEeeeecCCCCCCceeeccCCC---CCCCcceeEEeCCEEEEEccCCCCCCCCCCCCccccccCceeecCceEEeC
Q 024009 83 EVDHWSLAVKDGKPLEKEWRTEIPIP---RGGPHRACVVVDDRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYDDVYMLD 159 (274)
Q Consensus 83 ~~~~~~~~~~~~d~~~~~W~~~~~~p---~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 159 (274)
....+ .+++.||+.+++|+.++++. .+|.++++++++++|||+||...... .. ......+++++.||
T Consensus 154 ~~~~~-~~v~~yd~~~~~W~~l~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~-------~g--G~~~~~~~~v~~yd 223 (341)
T PLN02153 154 TPERF-RTIEAYNIADGKWVQLPDPGENFEKRGGAGFAVVQGKIWVVYGFATSIL-------PG--GKSDYESNAVQFFD 223 (341)
T ss_pred CCccc-ceEEEEECCCCeEeeCCCCCCCCCCCCcceEEEECCeEEEEeccccccc-------cC--CccceecCceEEEE
Confidence 11112 13455669999999988753 67778888999999999999753200 00 00111257899999
Q ss_pred -CCCCeEecCC---CCCCCccceeeEEEeCCEEEEEeccCCCCC--CcccccccCceEEEEcCCCceEEec-----cCCC
Q 024009 160 -DEMKWKVLPS---MPKPDSHIEFAWVLVNNSIVIVGGTTEKHP--TTKKMVLVGEIFQFNLNTLKWHVIG-----KLPY 228 (274)
Q Consensus 160 -~~~~W~~~~~---~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~--~~~~~~~~~~i~~yd~~~~~W~~~~-----~~p~ 228 (274)
.+++|+.++. +|.+|.. +++++.+++|||+||...... ........+++++||+.+++|+.+. ++|.
T Consensus 224 ~~~~~W~~~~~~g~~P~~r~~--~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~n~v~~~d~~~~~W~~~~~~~~~~~pr 301 (341)
T PLN02153 224 PASGKWTEVETTGAKPSARSV--FAHAVVGKYIIIFGGEVWPDLKGHLGPGTLSNEGYALDTETLVWEKLGECGEPAMPR 301 (341)
T ss_pred cCCCcEEeccccCCCCCCcce--eeeEEECCEEEEECcccCCccccccccccccccEEEEEcCccEEEeccCCCCCCCCC
Confidence 9999999875 5677766 566889999999999743210 0011124569999999999999884 4555
Q ss_pred ccceee-eEEE-cCEEEEEccccCCCCCCCCceeecCCeeeee
Q 024009 229 RVKTTL-AGYW-NGWLYFTSGQRDKGPDDPAPRKVHGDMWRTK 269 (274)
Q Consensus 229 ~~~~~~-~~~~-~~~l~~~GG~~~~~~~~~~~~~~~~~~W~~~ 269 (274)
.+..++ +++. +++|||+||..... +-.+|+|.+.
T Consensus 302 ~~~~~~~~~v~~~~~~~~~gG~~~~~-------~~~~~~~~~~ 337 (341)
T PLN02153 302 GWTAYTTATVYGKNGLLMHGGKLPTN-------ERTDDLYFYA 337 (341)
T ss_pred ccccccccccCCcceEEEEcCcCCCC-------ccccceEEEe
Confidence 555333 3333 45899999987653 1136777654
No 15
>PHA02713 hypothetical protein; Provisional
Probab=100.00 E-value=2.8e-33 Score=251.91 Aligned_cols=214 Identities=18% Similarity=0.235 Sum_probs=174.7
Q ss_pred CCeeEEEECCCCCeeeCCCCCCCCCCceEEEECCeEEEEcCCCC-CCCCCCccceEeeeecCCCCCCceeeccCCCCCCC
Q 024009 34 TAHTFVLDTETKKWQDLPPLPVPRYAPATQLWRGRLHVMGGSGE-NRYTPEVDHWSLAVKDGKPLEKEWRTEIPIPRGGP 112 (274)
Q Consensus 34 ~~~~~~~d~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~-~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~~~ 112 (274)
...+++||+.+++|..+++||.+|..+++++++++|||+||... .....+ ++.||+.+++|..+++||.+|.
T Consensus 271 ~~~v~~yd~~~~~W~~l~~mp~~r~~~~~a~l~~~IYviGG~~~~~~~~~~-------v~~Yd~~~n~W~~~~~m~~~R~ 343 (557)
T PHA02713 271 NPCILVYNINTMEYSVISTIPNHIINYASAIVDNEIIIAGGYNFNNPSLNK-------VYKINIENKIHVELPPMIKNRC 343 (557)
T ss_pred CCCEEEEeCCCCeEEECCCCCccccceEEEEECCEEEEEcCCCCCCCccce-------EEEEECCCCeEeeCCCCcchhh
Confidence 35789999999999999999999999999999999999999742 222233 3444589999999999999999
Q ss_pred cceeEEeCCEEEEEccCCCCCCCCCCCCccccccCceeecCceEEeC-CCCCeEecCCCCCCCccceeeEEEeCCEEEEE
Q 024009 113 HRACVVVDDRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYDDVYMLD-DEMKWKVLPSMPKPDSHIEFAWVLVNNSIVIV 191 (274)
Q Consensus 113 ~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d-~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~v~ 191 (274)
.++++.++++||++||.++.. .++.++.|| .+++|+.+++||.++.. ++++..+++||++
T Consensus 344 ~~~~~~~~g~IYviGG~~~~~-----------------~~~sve~Ydp~~~~W~~~~~mp~~r~~--~~~~~~~g~IYvi 404 (557)
T PHA02713 344 RFSLAVIDDTIYAIGGQNGTN-----------------VERTIECYTMGDDKWKMLPDMPIALSS--YGMCVLDQYIYII 404 (557)
T ss_pred ceeEEEECCEEEEECCcCCCC-----------------CCceEEEEECCCCeEEECCCCCccccc--ccEEEECCEEEEE
Confidence 999999999999999975331 245788999 89999999999999988 4568899999999
Q ss_pred eccCCCCCCc-----------ccccccCceEEEEcCCCceEEeccCCCccceeeeEEEcCEEEEEccccCCCC--CCCCc
Q 024009 192 GGTTEKHPTT-----------KKMVLVGEIFQFNLNTLKWHVIGKLPYRVKTTLAGYWNGWLYFTSGQRDKGP--DDPAP 258 (274)
Q Consensus 192 GG~~~~~~~~-----------~~~~~~~~i~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~l~~~GG~~~~~~--~~~~~ 258 (274)
||........ .....++.+++|||.+++|+.+++|+.+|..+++++++++||++||.++... ...+.
T Consensus 405 GG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~~r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~ 484 (557)
T PHA02713 405 GGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFWTGTIRPGVVSHKDDIYVVCDIKDEKNVKTCIFR 484 (557)
T ss_pred eCCCcccccccccccccccccccccccceEEEECCCCCeEeecCCCCcccccCcEEEECCEEEEEeCCCCCCccceeEEE
Confidence 9976432100 0001256899999999999999999999999999999999999999865332 23467
Q ss_pred eeecC-CeeeeeeccC
Q 024009 259 RKVHG-DMWRTKLLLN 273 (274)
Q Consensus 259 ~~~~~-~~W~~~~~~~ 273 (274)
|++.+ +.|+...+|.
T Consensus 485 Ydp~~~~~W~~~~~m~ 500 (557)
T PHA02713 485 YNTNTYNGWELITTTE 500 (557)
T ss_pred ecCCCCCCeeEccccC
Confidence 99998 7999877764
No 16
>PLN02193 nitrile-specifier protein
Probab=100.00 E-value=1.6e-32 Score=243.07 Aligned_cols=229 Identities=24% Similarity=0.329 Sum_probs=174.9
Q ss_pred CcCceeeEEeCCEEEEEcCcCCCCCCCCCCeeEEEECCCCCeeeCCCC---CCCCCCceEEEECCeEEEEcCCCCCCCCC
Q 024009 6 AHSHLGMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPL---PVPRYAPATQLWRGRLHVMGGSGENRYTP 82 (274)
Q Consensus 6 ~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~---~~~r~~~~~~~~~~~iyv~GG~~~~~~~~ 82 (274)
.|.+|++++++++|||+||.... ..++++|+||+.+++|++++++ |.+|..|+++.++++|||+||........
T Consensus 218 ~~~~~~~v~~~~~lYvfGG~~~~---~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~h~~~~~~~~iYv~GG~~~~~~~~ 294 (470)
T PLN02193 218 SCLGVRMVSIGSTLYVFGGRDAS---RQYNGFYSFDTTTNEWKLLTPVEEGPTPRSFHSMAADEENVYVFGGVSATARLK 294 (470)
T ss_pred cccceEEEEECCEEEEECCCCCC---CCCccEEEEECCCCEEEEcCcCCCCCCCccceEEEEECCEEEEECCCCCCCCcc
Confidence 35688999999999999998654 3478999999999999999887 88999999999999999999987554444
Q ss_pred CccceEeeeecCCCCCCceeeccC---CCCCCCcceeEEeCCEEEEEccCCCCCCCCCCCCccccccCceeecCceEEeC
Q 024009 83 EVDHWSLAVKDGKPLEKEWRTEIP---IPRGGPHRACVVVDDRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYDDVYMLD 159 (274)
Q Consensus 83 ~~~~~~~~~~~~d~~~~~W~~~~~---~p~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 159 (274)
++++ ||+.+++|+.+++ +|.+|.++++++++++||++||.... .+++++.||
T Consensus 295 ~~~~-------yd~~t~~W~~~~~~~~~~~~R~~~~~~~~~gkiyviGG~~g~------------------~~~dv~~yD 349 (470)
T PLN02193 295 TLDS-------YNIVDKKWFHCSTPGDSFSIRGGAGLEVVQGKVWVVYGFNGC------------------EVDDVHYYD 349 (470)
T ss_pred eEEE-------EECCCCEEEeCCCCCCCCCCCCCcEEEEECCcEEEEECCCCC------------------ccCceEEEE
Confidence 4444 4589999998765 56778888999999999999997532 147899999
Q ss_pred -CCCCeEecCCC---CCCCccceeeEEEeCCEEEEEeccCCCCCCc--ccccccCceEEEEcCCCceEEecc------CC
Q 024009 160 -DEMKWKVLPSM---PKPDSHIEFAWVLVNNSIVIVGGTTEKHPTT--KKMVLVGEIFQFNLNTLKWHVIGK------LP 227 (274)
Q Consensus 160 -~~~~W~~~~~~---~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~--~~~~~~~~i~~yd~~~~~W~~~~~------~p 227 (274)
.+++|+.++++ |.+|.. ++++..+++|||+||........ ....+.+++++||+.+++|+.+.. .|
T Consensus 350 ~~t~~W~~~~~~g~~P~~R~~--~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~ndv~~~D~~t~~W~~~~~~~~~~~~P 427 (470)
T PLN02193 350 PVQDKWTQVETFGVRPSERSV--FASAAVGKHIVIFGGEIAMDPLAHVGPGQLTDGTFALDTETLQWERLDKFGEEEETP 427 (470)
T ss_pred CCCCEEEEeccCCCCCCCcce--eEEEEECCEEEEECCccCCccccccCccceeccEEEEEcCcCEEEEcccCCCCCCCC
Confidence 89999999765 667766 55688999999999986422110 011246789999999999998854 35
Q ss_pred Cccceeee--EEEc--CEEEEEccccCCCCCCCCceeecCCeeeeeec
Q 024009 228 YRVKTTLA--GYWN--GWLYFTSGQRDKGPDDPAPRKVHGDMWRTKLL 271 (274)
Q Consensus 228 ~~~~~~~~--~~~~--~~l~~~GG~~~~~~~~~~~~~~~~~~W~~~~~ 271 (274)
.+|..+++ ..+. +.|++|||..... . ..+|.|++.+.
T Consensus 428 ~~R~~~~~~~~~~~~~~~~~~fGG~~~~~----~---~~~D~~~~~~~ 468 (470)
T PLN02193 428 SSRGWTASTTGTIDGKKGLVMHGGKAPTN----D---RFDDLFFYGID 468 (470)
T ss_pred CCCccccceeeEEcCCceEEEEcCCCCcc----c---cccceEEEecC
Confidence 66654432 2333 4599999986432 1 13899988654
No 17
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]
Probab=100.00 E-value=6e-33 Score=216.27 Aligned_cols=244 Identities=19% Similarity=0.338 Sum_probs=194.0
Q ss_pred CcCceeeEEeCCEEEEEcCcCCCCCCCC--CCeeEEEECCCCCeeeCCC-------------CCCCCCCceEEEECCeEE
Q 024009 6 AHSHLGMVTDGRYIYVVTGQYGPQCRGP--TAHTFVLDTETKKWQDLPP-------------LPVPRYAPATQLWRGRLH 70 (274)
Q Consensus 6 ~r~~~~~~~~~~~iyv~GG~~~~~~~~~--~~~~~~~d~~~~~W~~~~~-------------~~~~r~~~~~~~~~~~iy 70 (274)
.|-+|+++.++++||-|||+...+-.+. --++.+++..+-+|+.+++ .|.-|++|+++.+++++|
T Consensus 13 rRVNHAavaVG~riYSFGGYCsGedy~~~~piDVH~lNa~~~RWtk~pp~~~ka~i~~~yp~VPyqRYGHtvV~y~d~~y 92 (392)
T KOG4693|consen 13 RRVNHAAVAVGSRIYSFGGYCSGEDYDAKDPIDVHVLNAENYRWTKMPPGITKATIESPYPAVPYQRYGHTVVEYQDKAY 92 (392)
T ss_pred ccccceeeeecceEEecCCcccccccccCCcceeEEeeccceeEEecCcccccccccCCCCccchhhcCceEEEEcceEE
Confidence 5779999999999999999854332222 2479999999999999876 245599999999999999
Q ss_pred EEcCCCCCCCCCCccceEeeeecCCCCCCceeecc---CCCCCCCcceeEEeCCEEEEEccCCCCCCCCCCCCccccccC
Q 024009 71 VMGGSGENRYTPEVDHWSLAVKDGKPLEKEWRTEI---PIPRGGPHRACVVVDDRLLVIGGQEGDFMAKPGSPIFKCSRR 147 (274)
Q Consensus 71 v~GG~~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~---~~p~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~ 147 (274)
|.||++... ..++ .+|++|+.+++|.+.. .+|.+|.+|++|++++.+||+||++.+
T Consensus 93 vWGGRND~e--gaCN----~Ly~fDp~t~~W~~p~v~G~vPgaRDGHsAcV~gn~MyiFGGye~~--------------- 151 (392)
T KOG4693|consen 93 VWGGRNDDE--GACN----LLYEFDPETNVWKKPEVEGFVPGARDGHSACVWGNQMYIFGGYEED--------------- 151 (392)
T ss_pred EEcCccCcc--cccc----eeeeeccccccccccceeeecCCccCCceeeEECcEEEEecChHHH---------------
Confidence 999986432 1122 3667789999998843 489999999999999999999999866
Q ss_pred ceeecCceEEeC-CCCCeEecCCCC-CCCccceeeEEEeCCEEEEEeccCCCCCC--cccccccCceEEEEcCCCceEEe
Q 024009 148 NEVVYDDVYMLD-DEMKWKVLPSMP-KPDSHIEFAWVLVNNSIVIVGGTTEKHPT--TKKMVLVGEIFQFNLNTLKWHVI 223 (274)
Q Consensus 148 ~~~~~~~~~~~d-~~~~W~~~~~~~-~~~~~~~~~~~~~~~~l~v~GG~~~~~~~--~~~~~~~~~i~~yd~~~~~W~~~ 223 (274)
..+|++|++.+| .+.+|+.+.... .+|.+--+++.+.++.+||+||......+ ++.+.+.++|-.+|+.+..|++-
T Consensus 152 a~~FS~d~h~ld~~TmtWr~~~Tkg~PprwRDFH~a~~~~~~MYiFGGR~D~~gpfHs~~e~Yc~~i~~ld~~T~aW~r~ 231 (392)
T KOG4693|consen 152 AQRFSQDTHVLDFATMTWREMHTKGDPPRWRDFHTASVIDGMMYIFGGRSDESGPFHSIHEQYCDTIMALDLATGAWTRT 231 (392)
T ss_pred HHhhhccceeEeccceeeeehhccCCCchhhhhhhhhhccceEEEeccccccCCCccchhhhhcceeEEEeccccccccC
Confidence 677899999999 999999887542 33444446678889999999998776543 33445678999999999999986
Q ss_pred ---ccCCCccceeeeEEEcCEEEEEccccCCCC---CCCCceeecCCeeeeee
Q 024009 224 ---GKLPYRVKTTLAGYWNGWLYFTSGQRDKGP---DDPAPRKVHGDMWRTKL 270 (274)
Q Consensus 224 ---~~~p~~~~~~~~~~~~~~l~~~GG~~~~~~---~~~~~~~~~~~~W~~~~ 270 (274)
+..|..|++|++.+++++||+|||++..-. .+...|+..+.+|++..
T Consensus 232 p~~~~~P~GRRSHS~fvYng~~Y~FGGYng~ln~HfndLy~FdP~t~~W~~I~ 284 (392)
T KOG4693|consen 232 PENTMKPGGRRSHSTFVYNGKMYMFGGYNGTLNVHFNDLYCFDPKTSMWSVIS 284 (392)
T ss_pred CCCCcCCCcccccceEEEcceEEEecccchhhhhhhcceeecccccchheeee
Confidence 457899999999999999999999987432 34445667777887654
No 18
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=100.00 E-value=1.2e-31 Score=231.72 Aligned_cols=255 Identities=21% Similarity=0.314 Sum_probs=179.8
Q ss_pred CCCCCcCceeeEEeCCEEEEEcCcCCCCCCCCCCeeEEEECC--CCCeeeCCCCC-CCCCCceEEEECCeEEEEcCCCCC
Q 024009 2 PREMAHSHLGMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTE--TKKWQDLPPLP-VPRYAPATQLWRGRLHVMGGSGEN 78 (274)
Q Consensus 2 p~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~d~~--~~~W~~~~~~~-~~r~~~~~~~~~~~iyv~GG~~~~ 78 (274)
|+|.+|..+++++++++|||+||... +.+++||+. +++|..++++| .+|..++++.++++|||+||....
T Consensus 24 ~lP~~~~~~~~~~~~~~iyv~gG~~~-------~~~~~~d~~~~~~~W~~l~~~p~~~r~~~~~v~~~~~IYV~GG~~~~ 96 (376)
T PRK14131 24 DLPVPFKNGTGAIDNNTVYVGLGSAG-------TSWYKLDLNAPSKGWTKIAAFPGGPREQAVAAFIDGKLYVFGGIGKT 96 (376)
T ss_pred CCCcCccCCeEEEECCEEEEEeCCCC-------CeEEEEECCCCCCCeEECCcCCCCCcccceEEEECCEEEEEcCCCCC
Confidence 56778777788999999999999632 458899987 47899999998 589999999999999999997631
Q ss_pred CCCCCccceEeeeecCCCCCCceeeccC-CCCCCCcceeEE-eCCEEEEEccCCCCCCC-----------------CCCC
Q 024009 79 RYTPEVDHWSLAVKDGKPLEKEWRTEIP-IPRGGPHRACVV-VDDRLLVIGGQEGDFMA-----------------KPGS 139 (274)
Q Consensus 79 ~~~~~~~~~~~~~~~~d~~~~~W~~~~~-~p~~~~~~~~~~-~~~~iyv~GG~~~~~~~-----------------~~~~ 139 (274)
.. ........+++.||+.+++|+.+++ .|+.+.+|+++. .+++||++||....... ++..
T Consensus 97 ~~-~~~~~~~~~v~~YD~~~n~W~~~~~~~p~~~~~~~~~~~~~~~IYv~GG~~~~~~~~~~~d~~~~~~~~~~~~~i~~ 175 (376)
T PRK14131 97 NS-EGSPQVFDDVYKYDPKTNSWQKLDTRSPVGLAGHVAVSLHNGKAYITGGVNKNIFDGYFEDLAAAGKDKTPKDKIND 175 (376)
T ss_pred CC-CCceeEcccEEEEeCCCCEEEeCCCCCCCcccceEEEEeeCCEEEEECCCCHHHHHHHHhhhhhcccchhhhhhhHH
Confidence 10 0011122346666799999999885 577777777666 89999999997532000 0000
Q ss_pred CccccccCceeecCceEEeC-CCCCeEecCCCCC-CCccceeeEEEeCCEEEEEeccCCCCCCcccccccCceE--EEEc
Q 024009 140 PIFKCSRRNEVVYDDVYMLD-DEMKWKVLPSMPK-PDSHIEFAWVLVNNSIVIVGGTTEKHPTTKKMVLVGEIF--QFNL 215 (274)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~d-~~~~W~~~~~~~~-~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~i~--~yd~ 215 (274)
..+........+.++++.|| .+++|+.++++|. ++.. ++++..+++|||+||...... ...+++ .||+
T Consensus 176 ~~~~~~~~~~~~~~~v~~YD~~t~~W~~~~~~p~~~~~~--~a~v~~~~~iYv~GG~~~~~~------~~~~~~~~~~~~ 247 (376)
T PRK14131 176 AYFDKKPEDYFFNKEVLSYDPSTNQWKNAGESPFLGTAG--SAVVIKGNKLWLINGEIKPGL------RTDAVKQGKFTG 247 (376)
T ss_pred HHhcCChhhcCcCceEEEEECCCCeeeECCcCCCCCCCc--ceEEEECCEEEEEeeeECCCc------CChhheEEEecC
Confidence 00000001112357899999 8999999999986 5555 556888999999999754321 122444 5677
Q ss_pred CCCceEEeccCCCccc--------eeeeEEEcCEEEEEccccCCCC------------------CCCCceeecCCeeeee
Q 024009 216 NTLKWHVIGKLPYRVK--------TTLAGYWNGWLYFTSGQRDKGP------------------DDPAPRKVHGDMWRTK 269 (274)
Q Consensus 216 ~~~~W~~~~~~p~~~~--------~~~~~~~~~~l~~~GG~~~~~~------------------~~~~~~~~~~~~W~~~ 269 (274)
++++|+.+.+||.+|. .+.+++++++||++||....+. ...++|++.++.|+..
T Consensus 248 ~~~~W~~~~~~p~~~~~~~~~~~~~~~a~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~ 327 (376)
T PRK14131 248 NNLKWQKLPDLPPAPGGSSQEGVAGAFAGYSNGVLLVAGGANFPGARENYQNGKLYAHEGLKKSWSDEIYALVNGKWQKV 327 (376)
T ss_pred CCcceeecCCCCCCCcCCcCCccceEeceeECCEEEEeeccCCCCChhhhhcCCcccccCCcceeehheEEecCCccccc
Confidence 8999999999987763 2335678999999999875331 1346799999999865
Q ss_pred ecc
Q 024009 270 LLL 272 (274)
Q Consensus 270 ~~~ 272 (274)
.+|
T Consensus 328 ~~l 330 (376)
T PRK14131 328 GEL 330 (376)
T ss_pred CcC
Confidence 443
No 19
>PHA03098 kelch-like protein; Provisional
Probab=99.97 E-value=7.7e-30 Score=230.65 Aligned_cols=197 Identities=25% Similarity=0.371 Sum_probs=162.4
Q ss_pred CCCCCcCceeeEEeCCEEEEEcCcCCCCCCCCCCeeEEEECCCCCeeeCCCCCCCCCCceEEEECCeEEEEcCCCCC-CC
Q 024009 2 PREMAHSHLGMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLPVPRYAPATQLWRGRLHVMGGSGEN-RY 80 (274)
Q Consensus 2 p~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~-~~ 80 (274)
|+|.+|.++++++++++||++||.... ...+++++||+.+++|+.++++|.+|..++++.++++||++||.... ..
T Consensus 328 ~~~~~R~~~~~~~~~~~lyv~GG~~~~---~~~~~v~~yd~~~~~W~~~~~lp~~r~~~~~~~~~~~iYv~GG~~~~~~~ 404 (534)
T PHA03098 328 ELIYPRKNPGVTVFNNRIYVIGGIYNS---ISLNTVESWKPGESKWREEPPLIFPRYNPCVVNVNNLIYVIGGISKNDEL 404 (534)
T ss_pred CCCcccccceEEEECCEEEEEeCCCCC---EecceEEEEcCCCCceeeCCCcCcCCccceEEEECCEEEEECCcCCCCcc
Confidence 356789999999999999999998643 34688999999999999999999999999999999999999996432 22
Q ss_pred CCCccceEeeeecCCCCCCceeeccCCCCCCCcceeEEeCCEEEEEccCCCCCCCCCCCCccccccCceeecCceEEeC-
Q 024009 81 TPEVDHWSLAVKDGKPLEKEWRTEIPIPRGGPHRACVVVDDRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYDDVYMLD- 159 (274)
Q Consensus 81 ~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d- 159 (274)
..+ ++.||+.+++|+.++++|.++.+++++..+++||++||..... .....+.++.||
T Consensus 405 ~~~-------v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~--------------~~~~~~~v~~yd~ 463 (534)
T PHA03098 405 LKT-------VECFSLNTNKWSKGSPLPISHYGGCAIYHDGKIYVIGGISYID--------------NIKVYNIVESYNP 463 (534)
T ss_pred cce-------EEEEeCCCCeeeecCCCCccccCceEEEECCEEEEECCccCCC--------------CCcccceEEEecC
Confidence 233 3444589999999999999999999999999999999976431 001135699999
Q ss_pred CCCCeEecCCCCCCCccceeeEEEeCCEEEEEeccCCCCCCcccccccCceEEEEcCCCceEEeccCCCccc
Q 024009 160 DEMKWKVLPSMPKPDSHIEFAWVLVNNSIVIVGGTTEKHPTTKKMVLVGEIFQFNLNTLKWHVIGKLPYRVK 231 (274)
Q Consensus 160 ~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~i~~yd~~~~~W~~~~~~p~~~~ 231 (274)
.+++|+.+++++.+|.. ++++..+++|||+||..... ..+++++||+++++|+.++.+|....
T Consensus 464 ~~~~W~~~~~~~~~r~~--~~~~~~~~~iyv~GG~~~~~-------~~~~v~~yd~~~~~W~~~~~~p~~~~ 526 (534)
T PHA03098 464 VTNKWTELSSLNFPRIN--ASLCIFNNKIYVVGGDKYEY-------YINEIEVYDDKTNTWTLFCKFPKVIG 526 (534)
T ss_pred CCCceeeCCCCCccccc--ceEEEECCEEEEEcCCcCCc-------ccceeEEEeCCCCEEEecCCCccccc
Confidence 89999999999988877 45677899999999987543 25689999999999999987776543
No 20
>PHA02790 Kelch-like protein; Provisional
Probab=99.97 E-value=5.2e-30 Score=227.64 Aligned_cols=174 Identities=20% Similarity=0.358 Sum_probs=148.0
Q ss_pred CCCCCcCceeeEEeCCEEEEEcCcCCCCCCCCCCeeEEEECCCCCeeeCCCCCCCCCCceEEEECCeEEEEcCCCCCCCC
Q 024009 2 PREMAHSHLGMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLPVPRYAPATQLWRGRLHVMGGSGENRYT 81 (274)
Q Consensus 2 p~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~ 81 (274)
|++.+|..+++++++++||++||..+ .+++++||+.+++|+.+++||.+|..++++.++++||++||.... .
T Consensus 304 ~m~~~r~~~~~v~~~~~iYviGG~~~------~~sve~ydp~~n~W~~~~~l~~~r~~~~~~~~~g~IYviGG~~~~--~ 375 (480)
T PHA02790 304 PMNSPRLYASGVPANNKLYVVGGLPN------PTSVERWFHGDAAWVNMPSLLKPRCNPAVASINNVIYVIGGHSET--D 375 (480)
T ss_pred CCCchhhcceEEEECCEEEEECCcCC------CCceEEEECCCCeEEECCCCCCCCcccEEEEECCEEEEecCcCCC--C
Confidence 56789999999999999999999742 256899999999999999999999999999999999999997532 2
Q ss_pred CCccceEeeeecCCCCCCceeeccCCCCCCCcceeEEeCCEEEEEccCCCCCCCCCCCCccccccCceeecCceEEeCCC
Q 024009 82 PEVDHWSLAVKDGKPLEKEWRTEIPIPRGGPHRACVVVDDRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYDDVYMLDDE 161 (274)
Q Consensus 82 ~~~~~~~~~~~~~d~~~~~W~~~~~~p~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 161 (274)
.++++| ||.+++|+.+++|+.++..+++++++++||++||. .++|.+ .+
T Consensus 376 ~~ve~y-------dp~~~~W~~~~~m~~~r~~~~~~~~~~~IYv~GG~-----------------------~e~ydp-~~ 424 (480)
T PHA02790 376 TTTEYL-------LPNHDQWQFGPSTYYPHYKSCALVFGRRLFLVGRN-----------------------AEFYCE-SS 424 (480)
T ss_pred ccEEEE-------eCCCCEEEeCCCCCCccccceEEEECCEEEEECCc-----------------------eEEecC-CC
Confidence 344444 48999999999999999999999999999999983 234433 89
Q ss_pred CCeEecCCCCCCCccceeeEEEeCCEEEEEeccCCCCCCcccccccCceEEEEcCCCceEEe
Q 024009 162 MKWKVLPSMPKPDSHIEFAWVLVNNSIVIVGGTTEKHPTTKKMVLVGEIFQFNLNTLKWHVI 223 (274)
Q Consensus 162 ~~W~~~~~~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~i~~yd~~~~~W~~~ 223 (274)
++|+.+++|+.+|.. +++++.+++||++||..... .++.+++||+.+++|+..
T Consensus 425 ~~W~~~~~m~~~r~~--~~~~v~~~~IYviGG~~~~~-------~~~~ve~Yd~~~~~W~~~ 477 (480)
T PHA02790 425 NTWTLIDDPIYPRDN--PELIIVDNKLLLIGGFYRGS-------YIDTIEVYNNRTYSWNIW 477 (480)
T ss_pred CcEeEcCCCCCCccc--cEEEEECCEEEEECCcCCCc-------ccceEEEEECCCCeEEec
Confidence 999999999999987 56789999999999986432 246899999999999864
No 21
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]
Probab=99.97 E-value=5.6e-30 Score=210.31 Aligned_cols=247 Identities=19% Similarity=0.321 Sum_probs=195.4
Q ss_pred CCCCCCcCceeeEEe--CCEEEEEcCcCCCCCC-CCCCeeEEEECCCCCeeeC--CCCCCCCCCceEEEE-CCeEEEEcC
Q 024009 1 MPREMAHSHLGMVTD--GRYIYVVTGQYGPQCR-GPTAHTFVLDTETKKWQDL--PPLPVPRYAPATQLW-RGRLHVMGG 74 (274)
Q Consensus 1 ~p~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~-~~~~~~~~~d~~~~~W~~~--~~~~~~r~~~~~~~~-~~~iyv~GG 74 (274)
+|.|+||.+.++++. .+.+++|||...+.+. -..+++|.||.++++|..+ +..|.||+.|.++++ .+.+|+|||
T Consensus 61 ~~~PspRsn~sl~~nPekeELilfGGEf~ngqkT~vYndLy~Yn~k~~eWkk~~spn~P~pRsshq~va~~s~~l~~fGG 140 (521)
T KOG1230|consen 61 VPPPSPRSNPSLFANPEKEELILFGGEFYNGQKTHVYNDLYSYNTKKNEWKKVVSPNAPPPRSSHQAVAVPSNILWLFGG 140 (521)
T ss_pred CCCCCCCCCcceeeccCcceeEEecceeecceeEEEeeeeeEEeccccceeEeccCCCcCCCccceeEEeccCeEEEecc
Confidence 488999999998887 6689999998654433 3478999999999999998 567889999999998 589999999
Q ss_pred CCCC------CCCCCccceEeeeecCCCCCCceeecc--CCCCCCCcceeEEeCCEEEEEccCCCCCCCCCCCCcccccc
Q 024009 75 SGEN------RYTPEVDHWSLAVKDGKPLEKEWRTEI--PIPRGGPHRACVVVDDRLLVIGGQEGDFMAKPGSPIFKCSR 146 (274)
Q Consensus 75 ~~~~------~~~~~~~~~~~~~~~~d~~~~~W~~~~--~~p~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~ 146 (274)
.... .++.+..+|+ ..+++|..+. .-|.+|.+|.++.++.+|+||||+.+. +
T Consensus 141 EfaSPnq~qF~HYkD~W~fd-------~~trkweql~~~g~PS~RSGHRMvawK~~lilFGGFhd~-------------n 200 (521)
T KOG1230|consen 141 EFASPNQEQFHHYKDLWLFD-------LKTRKWEQLEFGGGPSPRSGHRMVAWKRQLILFGGFHDS-------------N 200 (521)
T ss_pred ccCCcchhhhhhhhheeeee-------eccchheeeccCCCCCCCccceeEEeeeeEEEEcceecC-------------C
Confidence 6422 1234444444 7899999854 478999999999999999999998754 6
Q ss_pred CceeecCceEEeC-CCCCeEecCC---CCCCCccceeeEEEe-CCEEEEEeccCCCCC--CcccccccCceEEEEcCC--
Q 024009 147 RNEVVYDDVYMLD-DEMKWKVLPS---MPKPDSHIEFAWVLV-NNSIVIVGGTTEKHP--TTKKMVLVGEIFQFNLNT-- 217 (274)
Q Consensus 147 ~~~~~~~~~~~~d-~~~~W~~~~~---~~~~~~~~~~~~~~~-~~~l~v~GG~~~~~~--~~~~~~~~~~i~~yd~~~-- 217 (274)
+...|++|+|+|| .+-+|+.+.+ .|.+|++ |.+.+. ++.|||.||++.... ........++++.+++.+
T Consensus 201 r~y~YyNDvy~FdLdtykW~Klepsga~PtpRSG--cq~~vtpqg~i~vyGGYsK~~~kK~~dKG~~hsDmf~L~p~~~~ 278 (521)
T KOG1230|consen 201 RDYIYYNDVYAFDLDTYKWSKLEPSGAGPTPRSG--CQFSVTPQGGIVVYGGYSKQRVKKDVDKGTRHSDMFLLKPEDGR 278 (521)
T ss_pred CceEEeeeeEEEeccceeeeeccCCCCCCCCCCc--ceEEecCCCcEEEEcchhHhhhhhhhhcCceeeeeeeecCCcCC
Confidence 7888999999999 9999999875 3778887 544554 999999999987532 233455678999999988
Q ss_pred ---CceEEe---ccCCCccceeeeEEE-cCEEEEEccccCCC----------CCCCCceeecCCeeeee
Q 024009 218 ---LKWHVI---GKLPYRVKTTLAGYW-NGWLYFTSGQRDKG----------PDDPAPRKVHGDMWRTK 269 (274)
Q Consensus 218 ---~~W~~~---~~~p~~~~~~~~~~~-~~~l~~~GG~~~~~----------~~~~~~~~~~~~~W~~~ 269 (274)
..|+.+ +--|.+|.+.++++. +++-|+|||.++-. ..++..|++..+.|+..
T Consensus 279 ~dKw~W~kvkp~g~kPspRsgfsv~va~n~kal~FGGV~D~eeeeEsl~g~F~NDLy~fdlt~nrW~~~ 347 (521)
T KOG1230|consen 279 EDKWVWTKVKPSGVKPSPRSGFSVAVAKNHKALFFGGVCDLEEEEESLSGEFFNDLYFFDLTRNRWSEG 347 (521)
T ss_pred CcceeEeeccCCCCCCCCCCceeEEEecCCceEEecceecccccchhhhhhhhhhhhheecccchhhHh
Confidence 678877 445889988888777 45999999988832 34556788888888754
No 22
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]
Probab=99.97 E-value=1.1e-28 Score=218.21 Aligned_cols=236 Identities=22% Similarity=0.365 Sum_probs=191.6
Q ss_pred CCCCcCceeeEEeCCEEEEEcCcCCCCCCCCCCeeEEEECCCCCeeeCC---CCCCCCCCceEEEECCeEEEEcCCCC-C
Q 024009 3 REMAHSHLGMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLP---PLPVPRYAPATQLWRGRLHVMGGSGE-N 78 (274)
Q Consensus 3 ~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~---~~~~~r~~~~~~~~~~~iyv~GG~~~-~ 78 (274)
.|.+|..|+++..++++||+||.......... ++|++|..+..|.... ..|.+|++|.+++++++||+|||... .
T Consensus 57 ~p~~R~~hs~~~~~~~~~vfGG~~~~~~~~~~-dl~~~d~~~~~w~~~~~~g~~p~~r~g~~~~~~~~~l~lfGG~~~~~ 135 (482)
T KOG0379|consen 57 GPIPRAGHSAVLIGNKLYVFGGYGSGDRLTDL-DLYVLDLESQLWTKPAATGDEPSPRYGHSLSAVGDKLYLFGGTDKKY 135 (482)
T ss_pred CcchhhccceeEECCEEEEECCCCCCCccccc-eeEEeecCCcccccccccCCCCCcccceeEEEECCeEEEEccccCCC
Confidence 47789999999999999999998766643333 6999999999998864 56789999999999999999999874 2
Q ss_pred CCCCCccceEeeeecCCCCCCceeeccC---CCCCCCcceeEEeCCEEEEEccCCCCCCCCCCCCccccccCceeecCce
Q 024009 79 RYTPEVDHWSLAVKDGKPLEKEWRTEIP---IPRGGPHRACVVVDDRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYDDV 155 (274)
Q Consensus 79 ~~~~~~~~~~~~~~~~d~~~~~W~~~~~---~p~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (274)
.+.. ++..+|+.+.+|..+.+ .|.+|.+|+++.++++|||+||...... .++++
T Consensus 136 ~~~~-------~l~~~d~~t~~W~~l~~~~~~P~~r~~Hs~~~~g~~l~vfGG~~~~~~----------------~~ndl 192 (482)
T KOG0379|consen 136 RNLN-------ELHSLDLSTRTWSLLSPTGDPPPPRAGHSATVVGTKLVVFGGIGGTGD----------------SLNDL 192 (482)
T ss_pred CChh-------heEeccCCCCcEEEecCcCCCCCCcccceEEEECCEEEEECCccCccc----------------ceeee
Confidence 2222 44555699999998654 6888999999999999999999876521 47899
Q ss_pred EEeC-CCCCeEecC---CCCCCCccceeeEEEeCCEEEEEeccCCCCCCcccccccCceEEEEcCCCceEEe---ccCCC
Q 024009 156 YMLD-DEMKWKVLP---SMPKPDSHIEFAWVLVNNSIVIVGGTTEKHPTTKKMVLVGEIFQFNLNTLKWHVI---GKLPY 228 (274)
Q Consensus 156 ~~~d-~~~~W~~~~---~~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~i~~yd~~~~~W~~~---~~~p~ 228 (274)
|+|| ++.+|.++. +.|.||.. +++++.+++++|+||...... ++++++++|+.+.+|..+ +.+|.
T Consensus 193 ~i~d~~~~~W~~~~~~g~~P~pR~g--H~~~~~~~~~~v~gG~~~~~~------~l~D~~~ldl~~~~W~~~~~~g~~p~ 264 (482)
T KOG0379|consen 193 HIYDLETSTWSELDTQGEAPSPRYG--HAMVVVGNKLLVFGGGDDGDV------YLNDVHILDLSTWEWKLLPTGGDLPS 264 (482)
T ss_pred eeeccccccceecccCCCCCCCCCC--ceEEEECCeEEEEeccccCCc------eecceEeeecccceeeeccccCCCCC
Confidence 9999 999998886 44666766 677999999999999883333 688999999999999965 67899
Q ss_pred ccceeeeEEEcCEEEEEccccCC---CCCCCCceeecCCeeeeee
Q 024009 229 RVKTTLAGYWNGWLYFTSGQRDK---GPDDPAPRKVHGDMWRTKL 270 (274)
Q Consensus 229 ~~~~~~~~~~~~~l~~~GG~~~~---~~~~~~~~~~~~~~W~~~~ 270 (274)
+|..|.+++.+++++++||...+ ...+...++++...|....
T Consensus 265 ~R~~h~~~~~~~~~~l~gG~~~~~~~~l~~~~~l~~~~~~w~~~~ 309 (482)
T KOG0379|consen 265 PRSGHSLTVSGDHLLLFGGGTDPKQEPLGDLYGLDLETLVWSKVE 309 (482)
T ss_pred CcceeeeEEECCEEEEEcCCcccccccccccccccccccceeeee
Confidence 99999999999999999998775 2344445555677776543
No 23
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]
Probab=99.93 E-value=3.7e-24 Score=189.50 Aligned_cols=206 Identities=24% Similarity=0.403 Sum_probs=167.2
Q ss_pred CCCCcCceeeEEeCCEEEEEcCcCCCCCCCCCCeeEEEECCCCCeeeCC---CCCCCCCCceEEEECCeEEEEcCCCCCC
Q 024009 3 REMAHSHLGMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLP---PLPVPRYAPATQLWRGRLHVMGGSGENR 79 (274)
Q Consensus 3 ~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~---~~~~~r~~~~~~~~~~~iyv~GG~~~~~ 79 (274)
.|.+|.+|+++.++++||+|||.+... ..+++++.||+.+++|..+. ..|.+|.+|+++.++++||||||.....
T Consensus 109 ~p~~r~g~~~~~~~~~l~lfGG~~~~~--~~~~~l~~~d~~t~~W~~l~~~~~~P~~r~~Hs~~~~g~~l~vfGG~~~~~ 186 (482)
T KOG0379|consen 109 EPSPRYGHSLSAVGDKLYLFGGTDKKY--RNLNELHSLDLSTRTWSLLSPTGDPPPPRAGHSATVVGTKLVVFGGIGGTG 186 (482)
T ss_pred CCCcccceeEEEECCeEEEEccccCCC--CChhheEeccCCCCcEEEecCcCCCCCCcccceEEEECCEEEEECCccCcc
Confidence 468999999999999999999998632 45789999999999999974 4688999999999999999999987554
Q ss_pred CCCCccceEeeeecCCCCCCceeecc---CCCCCCCcceeEEeCCEEEEEccCCCCCCCCCCCCccccccCceeecCceE
Q 024009 80 YTPEVDHWSLAVKDGKPLEKEWRTEI---PIPRGGPHRACVVVDDRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYDDVY 156 (274)
Q Consensus 80 ~~~~~~~~~~~~~~~d~~~~~W~~~~---~~p~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (274)
. +..+++.||+.+.+|.++. +.|.+|.+|++++++++++|+||... .+.+++|+|
T Consensus 187 ~------~~ndl~i~d~~~~~W~~~~~~g~~P~pR~gH~~~~~~~~~~v~gG~~~----------------~~~~l~D~~ 244 (482)
T KOG0379|consen 187 D------SLNDLHIYDLETSTWSELDTQGEAPSPRYGHAMVVVGNKLLVFGGGDD----------------GDVYLNDVH 244 (482)
T ss_pred c------ceeeeeeeccccccceecccCCCCCCCCCCceEEEECCeEEEEecccc----------------CCceecceE
Confidence 1 2335666678999999854 47889999999999999999999773 355789999
Q ss_pred EeC-CCCCeEecC---CCCCCCccceeeEEEeCCEEEEEeccCCCCCCcccccccCceEEEEcCCCceEEe---c-cCCC
Q 024009 157 MLD-DEMKWKVLP---SMPKPDSHIEFAWVLVNNSIVIVGGTTEKHPTTKKMVLVGEIFQFNLNTLKWHVI---G-KLPY 228 (274)
Q Consensus 157 ~~d-~~~~W~~~~---~~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~i~~yd~~~~~W~~~---~-~~p~ 228 (274)
.+| .+.+|..++ ..|.+|.. ++.+..+++++++||...... ..+.++|.||.++..|..+ . ..|.
T Consensus 245 ~ldl~~~~W~~~~~~g~~p~~R~~--h~~~~~~~~~~l~gG~~~~~~-----~~l~~~~~l~~~~~~w~~~~~~~~~~~~ 317 (482)
T KOG0379|consen 245 ILDLSTWEWKLLPTGGDLPSPRSG--HSLTVSGDHLLLFGGGTDPKQ-----EPLGDLYGLDLETLVWSKVESVGVVRPS 317 (482)
T ss_pred eeecccceeeeccccCCCCCCcce--eeeEEECCEEEEEcCCccccc-----ccccccccccccccceeeeecccccccc
Confidence 999 889999765 46788887 555799999999999876411 0367999999999999987 3 3466
Q ss_pred ccceeeeEEEc
Q 024009 229 RVKTTLAGYWN 239 (274)
Q Consensus 229 ~~~~~~~~~~~ 239 (274)
++..++.+...
T Consensus 318 ~~~~~~~~~~~ 328 (482)
T KOG0379|consen 318 PRLGHAAELID 328 (482)
T ss_pred ccccccceeec
Confidence 66666665553
No 24
>KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.92 E-value=1.7e-24 Score=182.66 Aligned_cols=239 Identities=20% Similarity=0.287 Sum_probs=180.2
Q ss_pred CCCCCcCceeeEEeCCEEEEEcCcCCCCCCCCCCeeEEEECCCCCeeeC---CCCCCCCCCceEEEECCeEEEEcCCC-C
Q 024009 2 PREMAHSHLGMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDL---PPLPVPRYAPATQLWRGRLHVMGGSG-E 77 (274)
Q Consensus 2 p~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~---~~~~~~r~~~~~~~~~~~iyv~GG~~-~ 77 (274)
|-|-+|.+|.++.+...|.+|||.+. ....+++.||..+++|..- .+.|.+-..|..+..+.+||+|||.. .
T Consensus 28 PvPrpRHGHRAVaikELiviFGGGNE----GiiDELHvYNTatnqWf~PavrGDiPpgcAA~GfvcdGtrilvFGGMvEY 103 (830)
T KOG4152|consen 28 PVPRPRHGHRAVAIKELIVIFGGGNE----GIIDELHVYNTATNQWFAPAVRGDIPPGCAAFGFVCDGTRILVFGGMVEY 103 (830)
T ss_pred CCCCccccchheeeeeeEEEecCCcc----cchhhhhhhccccceeecchhcCCCCCchhhcceEecCceEEEEccEeee
Confidence 77889999999999999999999754 3578999999999999764 47788888888888899999999964 2
Q ss_pred CCCCCCccceEeeeecCCCCCCceeeccC-------CCCCCCcceeEEeCCEEEEEccCCCCCCCCCCCCccccccCcee
Q 024009 78 NRYTPEVDHWSLAVKDGKPLEKEWRTEIP-------IPRGGPHRACVVVDDRLLVIGGQEGDFMAKPGSPIFKCSRRNEV 150 (274)
Q Consensus 78 ~~~~~~~~~~~~~~~~~d~~~~~W~~~~~-------~p~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~ 150 (274)
..|.+ ++|+.-..-..|+++.+ .|-+|-+|+..+++++.|+|||..++.- ...++-..
T Consensus 104 GkYsN-------dLYELQasRWeWkrlkp~~p~nG~pPCPRlGHSFsl~gnKcYlFGGLaNdse--------DpknNvPr 168 (830)
T KOG4152|consen 104 GKYSN-------DLYELQASRWEWKRLKPKTPKNGPPPCPRLGHSFSLVGNKCYLFGGLANDSE--------DPKNNVPR 168 (830)
T ss_pred ccccc-------hHHHhhhhhhhHhhcCCCCCCCCCCCCCccCceeEEeccEeEEecccccccc--------Ccccccch
Confidence 23333 33433344556776543 5678889999999999999999865521 11245667
Q ss_pred ecCceEEeC-CCC----CeEecC---CCCCCCccceeeEEEe------CCEEEEEeccCCCCCCcccccccCceEEEEcC
Q 024009 151 VYDDVYMLD-DEM----KWKVLP---SMPKPDSHIEFAWVLV------NNSIVIVGGTTEKHPTTKKMVLVGEIFQFNLN 216 (274)
Q Consensus 151 ~~~~~~~~d-~~~----~W~~~~---~~~~~~~~~~~~~~~~------~~~l~v~GG~~~~~~~~~~~~~~~~i~~yd~~ 216 (274)
|++|+|.++ ... .|.... .+|.+|..|. +++. ..+++|+||+++.- +.++|.+|++
T Consensus 169 YLnDlY~leL~~Gsgvv~W~ip~t~Gv~P~pRESHT--AViY~eKDs~~skmvvyGGM~G~R--------LgDLW~Ldl~ 238 (830)
T KOG4152|consen 169 YLNDLYILELRPGSGVVAWDIPITYGVLPPPRESHT--AVIYTEKDSKKSKMVVYGGMSGCR--------LGDLWTLDLD 238 (830)
T ss_pred hhcceEEEEeccCCceEEEecccccCCCCCCcccce--eEEEEeccCCcceEEEEccccccc--------ccceeEEecc
Confidence 899999997 322 487654 6788898853 3443 24899999998763 7799999999
Q ss_pred CCceEEe---ccCCCccceeeeEEEcCEEEEEccccCCC---------------CCCCCceeecCCeeeee
Q 024009 217 TLKWHVI---GKLPYRVKTTLAGYWNGWLYFTSGQRDKG---------------PDDPAPRKVHGDMWRTK 269 (274)
Q Consensus 217 ~~~W~~~---~~~p~~~~~~~~~~~~~~l~~~GG~~~~~---------------~~~~~~~~~~~~~W~~~ 269 (274)
+-+|.+. +..|-+|..|++..++++||+|||..-.- ...+...++.++-|.+.
T Consensus 239 Tl~W~kp~~~G~~PlPRSLHsa~~IGnKMyvfGGWVPl~~~~~~~~~hekEWkCTssl~clNldt~~W~tl 309 (830)
T KOG4152|consen 239 TLTWNKPSLSGVAPLPRSLHSATTIGNKMYVFGGWVPLVMDDVKVATHEKEWKCTSSLACLNLDTMAWETL 309 (830)
T ss_pred eeecccccccCCCCCCcccccceeecceeEEecceeeeeccccccccccceeeeccceeeeeecchheeee
Confidence 9999875 56788899999999999999999964311 22344555666667654
No 25
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]
Probab=99.90 E-value=8.8e-23 Score=168.20 Aligned_cols=201 Identities=22% Similarity=0.386 Sum_probs=152.3
Q ss_pred CCCCCCCCCceEEEE--CCeEEEEcCCCCCCCCCCccceEeeeecCCCCCCceeecc--CCCCCCCcceeEEeC-CEEEE
Q 024009 51 PPLPVPRYAPATQLW--RGRLHVMGGSGENRYTPEVDHWSLAVKDGKPLEKEWRTEI--PIPRGGPHRACVVVD-DRLLV 125 (274)
Q Consensus 51 ~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~--~~p~~~~~~~~~~~~-~~iyv 125 (274)
-+.|.+|..+++++. .+.|++|||.-.. -....+|+ ++|.||+.+++|+.+. ..|.+|++|.++++. +.+||
T Consensus 61 ~~~PspRsn~sl~~nPekeELilfGGEf~n--gqkT~vYn-dLy~Yn~k~~eWkk~~spn~P~pRsshq~va~~s~~l~~ 137 (521)
T KOG1230|consen 61 VPPPSPRSNPSLFANPEKEELILFGGEFYN--GQKTHVYN-DLYSYNTKKNEWKKVVSPNAPPPRSSHQAVAVPSNILWL 137 (521)
T ss_pred CCCCCCCCCcceeeccCcceeEEecceeec--ceeEEEee-eeeEEeccccceeEeccCCCcCCCccceeEEeccCeEEE
Confidence 356889999999987 6699999995422 12234444 8999999999999854 467788888887775 88999
Q ss_pred EccCCCCCCCCCCCCccccccCceee--cCceEEeC-CCCCeEecC--CCCCCCccceeeEEEeCCEEEEEeccCCCCCC
Q 024009 126 IGGQEGDFMAKPGSPIFKCSRRNEVV--YDDVYMLD-DEMKWKVLP--SMPKPDSHIEFAWVLVNNSIVIVGGTTEKHPT 200 (274)
Q Consensus 126 ~GG~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~d-~~~~W~~~~--~~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~ 200 (274)
+||-... .+...| +.|+|.|| .+.+|+++. ..|.+|++ +-++....+|+||||+-....
T Consensus 138 fGGEfaS-------------Pnq~qF~HYkD~W~fd~~trkweql~~~g~PS~RSG--HRMvawK~~lilFGGFhd~nr- 201 (521)
T KOG1230|consen 138 FGGEFAS-------------PNQEQFHHYKDLWLFDLKTRKWEQLEFGGGPSPRSG--HRMVAWKRQLILFGGFHDSNR- 201 (521)
T ss_pred eccccCC-------------cchhhhhhhhheeeeeeccchheeeccCCCCCCCcc--ceeEEeeeeEEEEcceecCCC-
Confidence 9996543 111222 67999999 999999986 56888887 678999999999999866532
Q ss_pred cccccccCceEEEEcCCCceEEe---ccCCCccceeeeEEE-cCEEEEEccccCCCC-CCCCceeecCCeeeeeecc
Q 024009 201 TKKMVLVGEIFQFNLNTLKWHVI---GKLPYRVKTTLAGYW-NGWLYFTSGQRDKGP-DDPAPRKVHGDMWRTKLLL 272 (274)
Q Consensus 201 ~~~~~~~~~i~~yd~~~~~W~~~---~~~p~~~~~~~~~~~-~~~l~~~GG~~~~~~-~~~~~~~~~~~~W~~~~~~ 272 (274)
...+.|++|+||+++-+|..+ +.-|.+|.++++++. +|.||+.||++..-. .+..--..++|+|.++++.
T Consensus 202 --~y~YyNDvy~FdLdtykW~Klepsga~PtpRSGcq~~vtpqg~i~vyGGYsK~~~kK~~dKG~~hsDmf~L~p~~ 276 (521)
T KOG1230|consen 202 --DYIYYNDVYAFDLDTYKWSKLEPSGAGPTPRSGCQFSVTPQGGIVVYGGYSKQRVKKDVDKGTRHSDMFLLKPED 276 (521)
T ss_pred --ceEEeeeeEEEeccceeeeeccCCCCCCCCCCcceEEecCCCcEEEEcchhHhhhhhhhhcCceeeeeeeecCCc
Confidence 233789999999999999988 335899999999998 899999999987431 1111112357888887654
No 26
>KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.88 E-value=8.2e-22 Score=166.52 Aligned_cols=225 Identities=20% Similarity=0.327 Sum_probs=163.2
Q ss_pred CCCcCceeeEEeCCEEEEEcCcCCCCCCCCCCeeEEEECCCCCeeeCC-------CCCCCCCCceEEEECCeEEEEcCCC
Q 024009 4 EMAHSHLGMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLP-------PLPVPRYAPATQLWRGRLHVMGGSG 76 (274)
Q Consensus 4 ~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~-------~~~~~r~~~~~~~~~~~iyv~GG~~ 76 (274)
|.+...++++.++.+||+|||+.... ...+++|.+.-..=.|.++. ++|++|-+|+...++++.|+|||..
T Consensus 79 PpgcAA~GfvcdGtrilvFGGMvEYG--kYsNdLYELQasRWeWkrlkp~~p~nG~pPCPRlGHSFsl~gnKcYlFGGLa 156 (830)
T KOG4152|consen 79 PPGCAAFGFVCDGTRILVFGGMVEYG--KYSNDLYELQASRWEWKRLKPKTPKNGPPPCPRLGHSFSLVGNKCYLFGGLA 156 (830)
T ss_pred CCchhhcceEecCceEEEEccEeeec--cccchHHHhhhhhhhHhhcCCCCCCCCCCCCCccCceeEEeccEeEEecccc
Confidence 45566788899999999999996654 24566555544444566662 4689999999999999999999976
Q ss_pred CCCCC--CCccceEeeeecCCCC----CCceeec---cCCCCCCCcceeEEe------CCEEEEEccCCCCCCCCCCCCc
Q 024009 77 ENRYT--PEVDHWSLAVKDGKPL----EKEWRTE---IPIPRGGPHRACVVV------DDRLLVIGGQEGDFMAKPGSPI 141 (274)
Q Consensus 77 ~~~~~--~~~~~~~~~~~~~d~~----~~~W~~~---~~~p~~~~~~~~~~~------~~~iyv~GG~~~~~~~~~~~~~ 141 (274)
++..+ +.+-.|--++|..+.+ --.|... ..+|.+|..|.++++ ..++||+||..+-
T Consensus 157 NdseDpknNvPrYLnDlY~leL~~Gsgvv~W~ip~t~Gv~P~pRESHTAViY~eKDs~~skmvvyGGM~G~--------- 227 (830)
T KOG4152|consen 157 NDSEDPKNNVPRYLNDLYILELRPGSGVVAWDIPITYGVLPPPRESHTAVIYTEKDSKKSKMVVYGGMSGC--------- 227 (830)
T ss_pred ccccCcccccchhhcceEEEEeccCCceEEEecccccCCCCCCcccceeEEEEeccCCcceEEEEcccccc---------
Confidence 54332 2333343344443332 2347653 457888888888887 3479999998754
Q ss_pred cccccCceeecCceEEeC-CCCCeEecC---CCCCCCccceeeEEEeCCEEEEEeccCCCCCCcc-------cccccCce
Q 024009 142 FKCSRRNEVVYDDVYMLD-DEMKWKVLP---SMPKPDSHIEFAWVLVNNSIVIVGGTTEKHPTTK-------KMVLVGEI 210 (274)
Q Consensus 142 ~~~~~~~~~~~~~~~~~d-~~~~W~~~~---~~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~-------~~~~~~~i 210 (274)
-+.|+|.+| .+..|.+.. -.|.||+. +++.++++++||+||-......+. --.+.+.+
T Consensus 228 ---------RLgDLW~Ldl~Tl~W~kp~~~G~~PlPRSL--Hsa~~IGnKMyvfGGWVPl~~~~~~~~~hekEWkCTssl 296 (830)
T KOG4152|consen 228 ---------RLGDLWTLDLDTLTWNKPSLSGVAPLPRSL--HSATTIGNKMYVFGGWVPLVMDDVKVATHEKEWKCTSSL 296 (830)
T ss_pred ---------cccceeEEecceeecccccccCCCCCCccc--ccceeecceeEEecceeeeeccccccccccceeeeccce
Confidence 368999999 999998764 34677777 556999999999999433211100 01145578
Q ss_pred EEEEcCCCceEEe-------ccCCCccceeeeEEEcCEEEEEccccC
Q 024009 211 FQFNLNTLKWHVI-------GKLPYRVKTTLAGYWNGWLYFTSGQRD 250 (274)
Q Consensus 211 ~~yd~~~~~W~~~-------~~~p~~~~~~~~~~~~~~l~~~GG~~~ 250 (274)
-++++.+..|+.+ ..+|.+|.+|+++.++.+||+-.|.++
T Consensus 297 ~clNldt~~W~tl~~d~~ed~tiPR~RAGHCAvAigtRlYiWSGRDG 343 (830)
T KOG4152|consen 297 ACLNLDTMAWETLLMDTLEDNTIPRARAGHCAVAIGTRLYIWSGRDG 343 (830)
T ss_pred eeeeecchheeeeeeccccccccccccccceeEEeccEEEEEeccch
Confidence 8999999999876 348999999999999999999998765
No 27
>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.86 E-value=2e-20 Score=152.22 Aligned_cols=239 Identities=20% Similarity=0.300 Sum_probs=174.6
Q ss_pred CCcCceeeEEeCCEEEEEcCcCCCC--CCCCCCeeEEEECCCCCeeeCC-CCCCCCCCceEEEECC-eEEEEcCCCCCCC
Q 024009 5 MAHSHLGMVTDGRYIYVVTGQYGPQ--CRGPTAHTFVLDTETKKWQDLP-PLPVPRYAPATQLWRG-RLHVMGGSGENRY 80 (274)
Q Consensus 5 ~~r~~~~~~~~~~~iyv~GG~~~~~--~~~~~~~~~~~d~~~~~W~~~~-~~~~~r~~~~~~~~~~-~iyv~GG~~~~~~ 80 (274)
.+|....+++++++||++||.-... ..+..+++++|||.+++|..+. ..|+....++++.+++ +||++||.....+
T Consensus 81 ~~rnqa~~a~~~~kLyvFgG~Gk~~~~~~~~~nd~Y~y~p~~nsW~kl~t~sP~gl~G~~~~~~~~~~i~f~GGvn~~if 160 (381)
T COG3055 81 GARNQAVAAVIGGKLYVFGGYGKSVSSSPQVFNDAYRYDPSTNSWHKLDTRSPTGLVGASTFSLNGTKIYFFGGVNQNIF 160 (381)
T ss_pred cccccchheeeCCeEEEeeccccCCCCCceEeeeeEEecCCCChhheeccccccccccceeEecCCceEEEEccccHHhh
Confidence 4788999999999999999974332 2456889999999999999986 4566778888888877 9999999753111
Q ss_pred C---------------------------CCccceEeeeecCCCCCCceeeccCCCCC-CCcceeEEeCCEEEEEccCCCC
Q 024009 81 T---------------------------PEVDHWSLAVKDGKPLEKEWRTEIPIPRG-GPHRACVVVDDRLLVIGGQEGD 132 (274)
Q Consensus 81 ~---------------------------~~~~~~~~~~~~~d~~~~~W~~~~~~p~~-~~~~~~~~~~~~iyv~GG~~~~ 132 (274)
. .+-..|+.++..|||++++|+.....|.. +++++++..++++.++-|.-.+
T Consensus 161 ~~yf~dv~~a~~d~~~~~~i~~~yf~~~~~dy~~n~ev~sy~p~~n~W~~~G~~pf~~~aGsa~~~~~n~~~lInGEiKp 240 (381)
T COG3055 161 NGYFEDVGAAGKDKEAVDKIIAHYFDKKAEDYFFNKEVLSYDPSTNQWRNLGENPFYGNAGSAVVIKGNKLTLINGEIKP 240 (381)
T ss_pred hhhHHhhhhhcccHHHHHHHHHHHhCCCHHHhcccccccccccccchhhhcCcCcccCccCcceeecCCeEEEEcceecC
Confidence 0 12234666888999999999999877754 4555555667779888875433
Q ss_pred CCCCCCCCccccccCceeecCceEEeC---CCCCeEecCCCCCCCccc-----eeeEEEeCCEEEEEeccCCCCCC----
Q 024009 133 FMAKPGSPIFKCSRRNEVVYDDVYMLD---DEMKWKVLPSMPKPDSHI-----EFAWVLVNNSIVIVGGTTEKHPT---- 200 (274)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~d---~~~~W~~~~~~~~~~~~~-----~~~~~~~~~~l~v~GG~~~~~~~---- 200 (274)
..++ .+++.++ ...+|..+.++|.+.... +...-..++++.+.||.+.....
T Consensus 241 -----------GLRt-----~~~k~~~~~~~~~~w~~l~~lp~~~~~~~eGvAGaf~G~s~~~~lv~GGAnF~Ga~~~y~ 304 (381)
T COG3055 241 -----------GLRT-----AEVKQADFGGDNLKWLKLSDLPAPIGSNKEGVAGAFSGKSNGEVLVAGGANFPGALKAYK 304 (381)
T ss_pred -----------Cccc-----cceeEEEeccCceeeeeccCCCCCCCCCccccceeccceeCCeEEEecCCCChhHHHHHH
Confidence 2222 3344444 567899999887765432 12224568899999986642110
Q ss_pred --------cccccccCceEEEEcCCCceEEeccCCCccceeeeEEEcCEEEEEccccCCCCCCCCceee
Q 024009 201 --------TKKMVLVGEIFQFNLNTLKWHVIGKLPYRVKTTLAGYWNGWLYFTSGQRDKGPDDPAPRKV 261 (274)
Q Consensus 201 --------~~~~~~~~~i~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~l~~~GG~~~~~~~~~~~~~~ 261 (274)
.......++||.+| +++|+.+++||+++....+...++.||++||+..++.....++.+
T Consensus 305 ~Gk~~AH~Gl~K~w~~~Vy~~d--~g~Wk~~GeLp~~l~YG~s~~~nn~vl~IGGE~~~Gka~~~v~~l 371 (381)
T COG3055 305 NGKFYAHEGLSKSWNSEVYIFD--NGSWKIVGELPQGLAYGVSLSYNNKVLLIGGETSGGKATTRVYSL 371 (381)
T ss_pred hcccccccchhhhhhceEEEEc--CCceeeecccCCCccceEEEecCCcEEEEccccCCCeeeeeEEEE
Confidence 00112356899998 889999999999999999999999999999999988766666653
No 28
>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.78 E-value=8.8e-18 Score=136.87 Aligned_cols=247 Identities=19% Similarity=0.319 Sum_probs=178.6
Q ss_pred ceeeEEeCCEEEEEcCcCCCCCCCCCCeeEEEECCC--CCeeeCCCCC-CCCCCceEEEECCeEEEEcCCCCCCCCCCcc
Q 024009 9 HLGMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTET--KKWQDLPPLP-VPRYAPATQLWRGRLHVMGGSGENRYTPEVD 85 (274)
Q Consensus 9 ~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~d~~~--~~W~~~~~~~-~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~ 85 (274)
+-+.+.+++.+||--|..+ ...+..|++. ..|++++.+| .+|.+..+++++++||||||...... ....
T Consensus 39 nG~Ga~ig~~~YVGLGs~G-------~afy~ldL~~~~k~W~~~a~FpG~~rnqa~~a~~~~kLyvFgG~Gk~~~-~~~~ 110 (381)
T COG3055 39 NGAGALIGDTVYVGLGSAG-------TAFYVLDLKKPGKGWTKIADFPGGARNQAVAAVIGGKLYVFGGYGKSVS-SSPQ 110 (381)
T ss_pred ccccceecceEEEEeccCC-------ccceehhhhcCCCCceEcccCCCcccccchheeeCCeEEEeeccccCCC-CCce
Confidence 3466777889999988433 4567777776 4799999888 56888888899999999999875544 5567
Q ss_pred ceEeeeecCCCCCCceeeccC-CCCCCCcceeEEeCC-EEEEEccCCCCCCCC-----------------CCCCcccccc
Q 024009 86 HWSLAVKDGKPLEKEWRTEIP-IPRGGPHRACVVVDD-RLLVIGGQEGDFMAK-----------------PGSPIFKCSR 146 (274)
Q Consensus 86 ~~~~~~~~~d~~~~~W~~~~~-~p~~~~~~~~~~~~~-~iyv~GG~~~~~~~~-----------------~~~~~~~~~~ 146 (274)
.++ ++|.|||.+++|+.+.. .|+...+++++.+++ +||++||......+. ..-..+....
T Consensus 111 ~~n-d~Y~y~p~~nsW~kl~t~sP~gl~G~~~~~~~~~~i~f~GGvn~~if~~yf~dv~~a~~d~~~~~~i~~~yf~~~~ 189 (381)
T COG3055 111 VFN-DAYRYDPSTNSWHKLDTRSPTGLVGASTFSLNGTKIYFFGGVNQNIFNGYFEDVGAAGKDKEAVDKIIAHYFDKKA 189 (381)
T ss_pred Eee-eeEEecCCCChhheeccccccccccceeEecCCceEEEEccccHHhhhhhHHhhhhhcccHHHHHHHHHHHhCCCH
Confidence 776 89999999999999776 677777888888888 899999976443211 1111222223
Q ss_pred CceeecCceEEeC-CCCCeEecCCCCC-CCccceeeEEEeCCEEEEEeccCCCCCCcccccccCceEEEEcC--CCceEE
Q 024009 147 RNEVVYDDVYMLD-DEMKWKVLPSMPK-PDSHIEFAWVLVNNSIVIVGGTTEKHPTTKKMVLVGEIFQFNLN--TLKWHV 222 (274)
Q Consensus 147 ~~~~~~~~~~~~d-~~~~W~~~~~~~~-~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~i~~yd~~--~~~W~~ 222 (274)
.+..+..++..|+ .+++|+.+...|- +++. ++++..++++.++-|.-.... ....+.+++.. .-+|..
T Consensus 190 ~dy~~n~ev~sy~p~~n~W~~~G~~pf~~~aG--sa~~~~~n~~~lInGEiKpGL------Rt~~~k~~~~~~~~~~w~~ 261 (381)
T COG3055 190 EDYFFNKEVLSYDPSTNQWRNLGENPFYGNAG--SAVVIKGNKLTLINGEIKPGL------RTAEVKQADFGGDNLKWLK 261 (381)
T ss_pred HHhcccccccccccccchhhhcCcCcccCccC--cceeecCCeEEEEcceecCCc------cccceeEEEeccCceeeee
Confidence 4666788999999 8999999996664 4554 555677888999988766654 34577777765 447999
Q ss_pred eccCCCccc-------eeeeEEEcCEEEEEccccCCCC------------------CCCCceeecCCeeeeeecc
Q 024009 223 IGKLPYRVK-------TTLAGYWNGWLYFTSGQRDKGP------------------DDPAPRKVHGDMWRTKLLL 272 (274)
Q Consensus 223 ~~~~p~~~~-------~~~~~~~~~~l~~~GG~~~~~~------------------~~~~~~~~~~~~W~~~~~~ 272 (274)
++.+|.+.. .+-....++++++.||.+.++. ....+|-+.+..|+..-++
T Consensus 262 l~~lp~~~~~~~eGvAGaf~G~s~~~~lv~GGAnF~Ga~~~y~~Gk~~AH~Gl~K~w~~~Vy~~d~g~Wk~~GeL 336 (381)
T COG3055 262 LSDLPAPIGSNKEGVAGAFSGKSNGEVLVAGGANFPGALKAYKNGKFYAHEGLSKSWNSEVYIFDNGSWKIVGEL 336 (381)
T ss_pred ccCCCCCCCCCccccceeccceeCCeEEEecCCCChhHHHHHHhcccccccchhhhhhceEEEEcCCceeeeccc
Confidence 888776553 2344455899999999877541 1234555668889876554
No 29
>PF13964 Kelch_6: Kelch motif
Probab=99.46 E-value=2.6e-13 Score=82.22 Aligned_cols=50 Identities=32% Similarity=0.517 Sum_probs=45.7
Q ss_pred CcCceeeEEeCCEEEEEcCcCCCCCCCCCCeeEEEECCCCCeeeCCCCCCCC
Q 024009 6 AHSHLGMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLPVPR 57 (274)
Q Consensus 6 ~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~~~~r 57 (274)
||.++++++++++|||+||..+. ....+++++||+.+++|+.+++||.+|
T Consensus 1 pR~~~s~v~~~~~iyv~GG~~~~--~~~~~~v~~yd~~t~~W~~~~~mp~pR 50 (50)
T PF13964_consen 1 PRYGHSAVVVGGKIYVFGGYDNS--GKYSNDVERYDPETNTWEQLPPMPTPR 50 (50)
T ss_pred CCccCEEEEECCEEEEECCCCCC--CCccccEEEEcCCCCcEEECCCCCCCC
Confidence 68999999999999999998775 256899999999999999999999887
No 30
>KOG2437 consensus Muskelin [Signal transduction mechanisms]
Probab=99.42 E-value=5.5e-14 Score=119.28 Aligned_cols=179 Identities=17% Similarity=0.197 Sum_probs=132.3
Q ss_pred CCCCcCceeeEEeCC--EEEEEcCcCCCCCCCCCCeeEEEECCCCCeeeC---CCCCCCCCCceEEEECC--eEEEEcCC
Q 024009 3 REMAHSHLGMVTDGR--YIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDL---PPLPVPRYAPATQLWRG--RLHVMGGS 75 (274)
Q Consensus 3 ~~~~r~~~~~~~~~~--~iyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~---~~~~~~r~~~~~~~~~~--~iyv~GG~ 75 (274)
.|..|.+|.++.... .+|+.||+++.+ .+.++|+|+-..++|..+ ...|-+|++|.++.... +||+.|-+
T Consensus 257 ~p~~RgGHQMV~~~~~~CiYLYGGWdG~~---~l~DFW~Y~v~e~~W~~iN~~t~~PG~RsCHRMVid~S~~KLYLlG~Y 333 (723)
T KOG2437|consen 257 RPGMRGGHQMVIDVQTECVYLYGGWDGTQ---DLADFWAYSVKENQWTCINRDTEGPGARSCHRMVIDISRRKLYLLGRY 333 (723)
T ss_pred CccccCcceEEEeCCCcEEEEecCcccch---hHHHHHhhcCCcceeEEeecCCCCCcchhhhhhhhhhhHhHHhhhhhc
Confidence 367899999999965 999999999875 579999999999999987 35788999999998744 99999976
Q ss_pred CCCCCCCCccceEeeeecCCCCCCceeecc------CCCCCCCcceeEEeCCE--EEEEccCCCCCCCCCCCCccccccC
Q 024009 76 GENRYTPEVDHWSLAVKDGKPLEKEWRTEI------PIPRGGPHRACVVVDDR--LLVIGGQEGDFMAKPGSPIFKCSRR 147 (274)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~------~~p~~~~~~~~~~~~~~--iyv~GG~~~~~~~~~~~~~~~~~~~ 147 (274)
-........ -.+.++..+|..++.|..+. .-|...+.|.+++..++ |||+||..-. .
T Consensus 334 ~~sS~r~~~-s~RsDfW~FDi~~~~W~~ls~dt~~dGGP~~vfDHqM~Vd~~k~~iyVfGGr~~~--------------~ 398 (723)
T KOG2437|consen 334 LDSSVRNSK-SLRSDFWRFDIDTNTWMLLSEDTAADGGPKLVFDHQMCVDSEKHMIYVFGGRILT--------------C 398 (723)
T ss_pred ccccccccc-ccccceEEEecCCceeEEecccccccCCcceeecceeeEecCcceEEEecCeecc--------------C
Confidence 432221211 22334555578899998754 24677778899998887 9999997533 2
Q ss_pred ceeecCceEEeC-CCCCeEecCCC----------CCCCccceeeEEEeCCEEEEEeccCCCCC
Q 024009 148 NEVVYDDVYMLD-DEMKWKVLPSM----------PKPDSHIEFAWVLVNNSIVIVGGTTEKHP 199 (274)
Q Consensus 148 ~~~~~~~~~~~d-~~~~W~~~~~~----------~~~~~~~~~~~~~~~~~l~v~GG~~~~~~ 199 (274)
.+..+.-+|.|| ....|..+..- ...|.++.+-++.-++.+|++||......
T Consensus 399 ~e~~f~GLYaf~~~~~~w~~l~e~~~~~~~vvE~~~sR~ghcmE~~~~n~~ly~fggq~s~~E 461 (723)
T KOG2437|consen 399 NEPQFSGLYAFNCQCQTWKLLREDSCNAGPVVEDIQSRIGHCMEFHSKNRCLYVFGGQRSKTE 461 (723)
T ss_pred CCccccceEEEecCCccHHHHHHHHhhcCcchhHHHHHHHHHHHhcCCCCeEEeccCcccceE
Confidence 334467899999 78889776521 22344444555667789999999877654
No 31
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....
Probab=99.20 E-value=1.3e-11 Score=73.67 Aligned_cols=47 Identities=40% Similarity=0.700 Sum_probs=42.0
Q ss_pred CcCceeeEEeCCEEEEEcCcCCCCCCCCCCeeEEEECCCCCeeeCCCCC
Q 024009 6 AHSHLGMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLP 54 (274)
Q Consensus 6 ~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~~ 54 (274)
||.++++++++++||++||..... ..++++++||+.+++|+.+++||
T Consensus 1 pR~~~~~~~~~~~iyv~GG~~~~~--~~~~~v~~yd~~~~~W~~~~~mp 47 (47)
T PF01344_consen 1 PRSGHAAVVVGNKIYVIGGYDGNN--QPTNSVEVYDPETNTWEELPPMP 47 (47)
T ss_dssp -BBSEEEEEETTEEEEEEEBESTS--SBEEEEEEEETTTTEEEEEEEES
T ss_pred CCccCEEEEECCEEEEEeeecccC--ceeeeEEEEeCCCCEEEEcCCCC
Confidence 689999999999999999998732 57899999999999999999876
No 32
>PF13964 Kelch_6: Kelch motif
Probab=99.17 E-value=1e-10 Score=70.71 Aligned_cols=46 Identities=17% Similarity=0.370 Sum_probs=40.3
Q ss_pred eeEEEeCCEEEEEeccCCCCCCcccccccCceEEEEcCCCceEEeccCCCcc
Q 024009 179 FAWVLVNNSIVIVGGTTEKHPTTKKMVLVGEIFQFNLNTLKWHVIGKLPYRV 230 (274)
Q Consensus 179 ~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~i~~yd~~~~~W~~~~~~p~~~ 230 (274)
++++..+++|||+||...... .++++++||+++++|+++++||.+|
T Consensus 5 ~s~v~~~~~iyv~GG~~~~~~------~~~~v~~yd~~t~~W~~~~~mp~pR 50 (50)
T PF13964_consen 5 HSAVVVGGKIYVFGGYDNSGK------YSNDVERYDPETNTWEQLPPMPTPR 50 (50)
T ss_pred CEEEEECCEEEEECCCCCCCC------ccccEEEEcCCCCcEEECCCCCCCC
Confidence 567999999999999987422 4679999999999999999999886
No 33
>PF13415 Kelch_3: Galactose oxidase, central domain
Probab=99.16 E-value=9.9e-11 Score=70.36 Aligned_cols=49 Identities=24% Similarity=0.462 Sum_probs=42.7
Q ss_pred CCEEEEEcCcCCCCCCCCCCeeEEEECCCCCeeeCCCCCCCCCCceEEEE
Q 024009 16 GRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLPVPRYAPATQLW 65 (274)
Q Consensus 16 ~~~iyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~~~~r~~~~~~~~ 65 (274)
+++|||+||..... ...++++|+||+.+++|++++++|.+|..|+++++
T Consensus 1 g~~~~vfGG~~~~~-~~~~nd~~~~~~~~~~W~~~~~~P~~R~~h~~~~i 49 (49)
T PF13415_consen 1 GNKLYVFGGYDDDG-GTRLNDVWVFDLDTNTWTRIGDLPPPRSGHTATVI 49 (49)
T ss_pred CCEEEEECCcCCCC-CCEecCEEEEECCCCEEEECCCCCCCccceEEEEC
Confidence 57999999998422 35689999999999999999999999999999863
No 34
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding
Probab=99.15 E-value=1.5e-10 Score=69.63 Aligned_cols=49 Identities=27% Similarity=0.409 Sum_probs=41.4
Q ss_pred CcCceeeEEeCCEEEEEcCcCCCCCCCCCCeeEEEECCCCCeeeCCCCC
Q 024009 6 AHSHLGMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLP 54 (274)
Q Consensus 6 ~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~~ 54 (274)
||.+|++++++++|||+||..........+++++||+.+++|+++++++
T Consensus 1 ~r~~hs~~~~~~kiyv~GG~~~~~~~~~~~~v~~~d~~t~~W~~~~~~g 49 (49)
T PF07646_consen 1 PRYGHSAVVLDGKIYVFGGYGTDNGGSSSNDVWVFDTETNQWTELSPMG 49 (49)
T ss_pred CccceEEEEECCEEEEECCcccCCCCcccceeEEEECCCCEEeecCCCC
Confidence 6899999999999999999922222356789999999999999998875
No 35
>KOG2437 consensus Muskelin [Signal transduction mechanisms]
Probab=99.14 E-value=5.8e-11 Score=101.25 Aligned_cols=183 Identities=18% Similarity=0.274 Sum_probs=127.9
Q ss_pred CCCeeeCCC----------CCCCCCCceEEEECC--eEEEEcCCCCCCCCCCccceEeeeecCCCCCCceeeccC---CC
Q 024009 44 TKKWQDLPP----------LPVPRYAPATQLWRG--RLHVMGGSGENRYTPEVDHWSLAVKDGKPLEKEWRTEIP---IP 108 (274)
Q Consensus 44 ~~~W~~~~~----------~~~~r~~~~~~~~~~--~iyv~GG~~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~---~p 108 (274)
+.+|+.+++ -|..|.+|.++...+ -||++||.++.+...+...|+ ..++.|..+.. .|
T Consensus 238 ~~~W~~i~~~~~~~~~~~~~p~~RgGHQMV~~~~~~CiYLYGGWdG~~~l~DFW~Y~-------v~e~~W~~iN~~t~~P 310 (723)
T KOG2437|consen 238 KPRWSQIIPKSTKGDGEDNRPGMRGGHQMVIDVQTECVYLYGGWDGTQDLADFWAYS-------VKENQWTCINRDTEGP 310 (723)
T ss_pred cccccccCchhhcccccccCccccCcceEEEeCCCcEEEEecCcccchhHHHHHhhc-------CCcceeEEeecCCCCC
Confidence 457877753 356799999998744 899999998876655555554 67888988543 67
Q ss_pred CCCCcceeEEeC--CEEEEEccCCCCCCCCCCCCccccccCceeecCceEEeC-CCCCeEecC------CCCCCCcccee
Q 024009 109 RGGPHRACVVVD--DRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYDDVYMLD-DEMKWKVLP------SMPKPDSHIEF 179 (274)
Q Consensus 109 ~~~~~~~~~~~~--~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d-~~~~W~~~~------~~~~~~~~~~~ 179 (274)
..|..|.++..- .+||++|-+-+... ++..-...|+|.|| .++.|.-+. ..|..... +
T Consensus 311 G~RsCHRMVid~S~~KLYLlG~Y~~sS~-----------r~~~s~RsDfW~FDi~~~~W~~ls~dt~~dGGP~~vfD--H 377 (723)
T KOG2437|consen 311 GARSCHRMVIDISRRKLYLLGRYLDSSV-----------RNSKSLRSDFWRFDIDTNTWMLLSEDTAADGGPKLVFD--H 377 (723)
T ss_pred cchhhhhhhhhhhHhHHhhhhhcccccc-----------ccccccccceEEEecCCceeEEecccccccCCcceeec--c
Confidence 777777777654 58999998765522 22223457999999 999998775 23444444 4
Q ss_pred eEEEeCCE--EEEEeccCCCCCCcccccccCceEEEEcCCCceEEeccC----------CCccceeeeEEE--cCEEEEE
Q 024009 180 AWVLVNNS--IVIVGGTTEKHPTTKKMVLVGEIFQFNLNTLKWHVIGKL----------PYRVKTTLAGYW--NGWLYFT 245 (274)
Q Consensus 180 ~~~~~~~~--l~v~GG~~~~~~~~~~~~~~~~i~~yd~~~~~W~~~~~~----------p~~~~~~~~~~~--~~~l~~~ 245 (274)
.+++.+++ |||+||..-..... ....+|.||+....|+.+..- -..|-+|++-.+ +.++|+|
T Consensus 378 qM~Vd~~k~~iyVfGGr~~~~~e~----~f~GLYaf~~~~~~w~~l~e~~~~~~~vvE~~~sR~ghcmE~~~~n~~ly~f 453 (723)
T KOG2437|consen 378 QMCVDSEKHMIYVFGGRILTCNEP----QFSGLYAFNCQCQTWKLLREDSCNAGPVVEDIQSRIGHCMEFHSKNRCLYVF 453 (723)
T ss_pred eeeEecCcceEEEecCeeccCCCc----cccceEEEecCCccHHHHHHHHhhcCcchhHHHHHHHHHHHhcCCCCeEEec
Confidence 55666665 99999975443311 355899999999999876221 244555666555 5799999
Q ss_pred ccccC
Q 024009 246 SGQRD 250 (274)
Q Consensus 246 GG~~~ 250 (274)
||..-
T Consensus 454 ggq~s 458 (723)
T KOG2437|consen 454 GGQRS 458 (723)
T ss_pred cCccc
Confidence 99654
No 36
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=99.10 E-value=8.7e-11 Score=70.70 Aligned_cols=48 Identities=27% Similarity=0.521 Sum_probs=31.5
Q ss_pred CcCceeeEEe-CCEEEEEcCcCCCCCCCCCCeeEEEECCCCCeeeCCCCCC
Q 024009 6 AHSHLGMVTD-GRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLPV 55 (274)
Q Consensus 6 ~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~~~ 55 (274)
||.+|+++.+ +++|||+||..... ..++++|+||+.+++|++++++|.
T Consensus 1 pR~~h~~~~~~~~~i~v~GG~~~~~--~~~~d~~~~d~~~~~W~~~~~~P~ 49 (49)
T PF13418_consen 1 PRYGHSAVSIGDNSIYVFGGRDSSG--SPLNDLWIFDIETNTWTRLPSMPS 49 (49)
T ss_dssp --BS-EEEEE-TTEEEEE--EEE-T--EE---EEEEETTTTEEEE--SS--
T ss_pred CcceEEEEEEeCCeEEEECCCCCCC--cccCCEEEEECCCCEEEECCCCCC
Confidence 6899999998 59999999998764 468999999999999999988773
No 37
>PF13415 Kelch_3: Galactose oxidase, central domain
Probab=99.02 E-value=9e-10 Score=66.16 Aligned_cols=48 Identities=25% Similarity=0.474 Sum_probs=41.4
Q ss_pred CCEEEEEeccCC-CCCCcccccccCceEEEEcCCCceEEeccCCCccceeeeEEE
Q 024009 185 NNSIVIVGGTTE-KHPTTKKMVLVGEIFQFNLNTLKWHVIGKLPYRVKTTLAGYW 238 (274)
Q Consensus 185 ~~~l~v~GG~~~-~~~~~~~~~~~~~i~~yd~~~~~W~~~~~~p~~~~~~~~~~~ 238 (274)
+++|||+||... ... .++++|+||+.+++|++++++|.+|.+|+++++
T Consensus 1 g~~~~vfGG~~~~~~~------~~nd~~~~~~~~~~W~~~~~~P~~R~~h~~~~i 49 (49)
T PF13415_consen 1 GNKLYVFGGYDDDGGT------RLNDVWVFDLDTNTWTRIGDLPPPRSGHTATVI 49 (49)
T ss_pred CCEEEEECCcCCCCCC------EecCEEEEECCCCEEEECCCCCCCccceEEEEC
Confidence 579999999883 222 578999999999999999999999999998863
No 38
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....
Probab=98.96 E-value=1.7e-09 Score=64.35 Aligned_cols=43 Identities=23% Similarity=0.452 Sum_probs=37.9
Q ss_pred eeEEEeCCEEEEEeccCCCCCCcccccccCceEEEEcCCCceEEeccCC
Q 024009 179 FAWVLVNNSIVIVGGTTEKHPTTKKMVLVGEIFQFNLNTLKWHVIGKLP 227 (274)
Q Consensus 179 ~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~i~~yd~~~~~W~~~~~~p 227 (274)
++++..+++|||+||...... .++++++||+.+++|+++++||
T Consensus 5 ~~~~~~~~~iyv~GG~~~~~~------~~~~v~~yd~~~~~W~~~~~mp 47 (47)
T PF01344_consen 5 HAAVVVGNKIYVIGGYDGNNQ------PTNSVEVYDPETNTWEELPPMP 47 (47)
T ss_dssp EEEEEETTEEEEEEEBESTSS------BEEEEEEEETTTTEEEEEEEES
T ss_pred CEEEEECCEEEEEeeecccCc------eeeeEEEEeCCCCEEEEcCCCC
Confidence 678999999999999988333 5779999999999999998886
No 39
>smart00612 Kelch Kelch domain.
Probab=98.91 E-value=2.6e-09 Score=63.46 Aligned_cols=47 Identities=38% Similarity=0.604 Sum_probs=40.9
Q ss_pred EEEEEcCcCCCCCCCCCCeeEEEECCCCCeeeCCCCCCCCCCceEEEECC
Q 024009 18 YIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLPVPRYAPATQLWRG 67 (274)
Q Consensus 18 ~iyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~~~~r~~~~~~~~~~ 67 (274)
+||++||..+. ...+++++||+.+++|+.+++|+.+|..++++.+++
T Consensus 1 ~iyv~GG~~~~---~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~~g 47 (47)
T smart00612 1 KIYVVGGFDGG---QRLKSVEVYDPETNKWTPLPSMPTPRSGHGVAVING 47 (47)
T ss_pred CEEEEeCCCCC---ceeeeEEEECCCCCeEccCCCCCCccccceEEEeCC
Confidence 48999998652 357899999999999999999999999999988764
No 40
>PF13854 Kelch_5: Kelch motif
Probab=98.83 E-value=1e-08 Score=59.26 Aligned_cols=42 Identities=21% Similarity=0.248 Sum_probs=35.6
Q ss_pred CCCCcCceeeEEeCCEEEEEcCcCCCCCCCCCCeeEEEECCCC
Q 024009 3 REMAHSHLGMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTETK 45 (274)
Q Consensus 3 ~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~d~~~~ 45 (274)
.|.+|.+|++++++++||++||... +.....+++|+||..++
T Consensus 1 ~P~~R~~hs~~~~~~~iyi~GG~~~-~~~~~~~d~~~l~l~sf 42 (42)
T PF13854_consen 1 IPSPRYGHSAVVVGNNIYIFGGYSG-NNNSYSNDLYVLDLPSF 42 (42)
T ss_pred CCCCccceEEEEECCEEEEEcCccC-CCCCEECcEEEEECCCC
Confidence 3789999999999999999999985 22356899999998864
No 41
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=98.78 E-value=1e-08 Score=61.58 Aligned_cols=48 Identities=23% Similarity=0.513 Sum_probs=28.6
Q ss_pred CCccceeeEEEe-CCEEEEEeccCCCCCCcccccccCceEEEEcCCCceEEeccCCC
Q 024009 173 PDSHIEFAWVLV-NNSIVIVGGTTEKHPTTKKMVLVGEIFQFNLNTLKWHVIGKLPY 228 (274)
Q Consensus 173 ~~~~~~~~~~~~-~~~l~v~GG~~~~~~~~~~~~~~~~i~~yd~~~~~W~~~~~~p~ 228 (274)
||.. ++++.. +++|||+||...... .++++++||+++++|++++++|.
T Consensus 1 pR~~--h~~~~~~~~~i~v~GG~~~~~~------~~~d~~~~d~~~~~W~~~~~~P~ 49 (49)
T PF13418_consen 1 PRYG--HSAVSIGDNSIYVFGGRDSSGS------PLNDLWIFDIETNTWTRLPSMPS 49 (49)
T ss_dssp --BS---EEEEE-TTEEEEE--EEE-TE------E---EEEEETTTTEEEE--SS--
T ss_pred Ccce--EEEEEEeCCeEEEECCCCCCCc------ccCCEEEEECCCCEEEECCCCCC
Confidence 3555 445655 699999999987642 57899999999999999988774
No 42
>smart00612 Kelch Kelch domain.
Probab=98.74 E-value=1.7e-08 Score=59.90 Aligned_cols=47 Identities=21% Similarity=0.329 Sum_probs=40.1
Q ss_pred EEEEEeccCCCCCCcccccccCceEEEEcCCCceEEeccCCCccceeeeEEEcC
Q 024009 187 SIVIVGGTTEKHPTTKKMVLVGEIFQFNLNTLKWHVIGKLPYRVKTTLAGYWNG 240 (274)
Q Consensus 187 ~l~v~GG~~~~~~~~~~~~~~~~i~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~ 240 (274)
+||++||..... .++++++||+.+++|+.+++||.+|..++++.+++
T Consensus 1 ~iyv~GG~~~~~-------~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~~g 47 (47)
T smart00612 1 KIYVVGGFDGGQ-------RLKSVEVYDPETNKWTPLPSMPTPRSGHGVAVING 47 (47)
T ss_pred CEEEEeCCCCCc-------eeeeEEEECCCCCeEccCCCCCCccccceEEEeCC
Confidence 489999986532 36689999999999999999999999999888764
No 43
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding
Probab=98.68 E-value=5e-08 Score=58.49 Aligned_cols=46 Identities=22% Similarity=0.398 Sum_probs=35.2
Q ss_pred CCCCceEEEECCeEEEEcCC---CCCCCCCCccceEeeeecCCCCCCceeeccCCC
Q 024009 56 PRYAPATQLWRGRLHVMGGS---GENRYTPEVDHWSLAVKDGKPLEKEWRTEIPIP 108 (274)
Q Consensus 56 ~r~~~~~~~~~~~iyv~GG~---~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p 108 (274)
+|..|++++.+++|||+||. ....... ++..+|+.+++|+.+++++
T Consensus 1 ~r~~hs~~~~~~kiyv~GG~~~~~~~~~~~-------~v~~~d~~t~~W~~~~~~g 49 (49)
T PF07646_consen 1 PRYGHSAVVLDGKIYVFGGYGTDNGGSSSN-------DVWVFDTETNQWTELSPMG 49 (49)
T ss_pred CccceEEEEECCEEEEECCcccCCCCcccc-------eeEEEECCCCEEeecCCCC
Confidence 58999999999999999999 2222223 3444558999999998875
No 44
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=98.64 E-value=7.6e-06 Score=65.88 Aligned_cols=178 Identities=15% Similarity=0.223 Sum_probs=105.9
Q ss_pred eeeEEeCCEEEEEcCcCCC-------------------CCCCCCCeeEEEECCCCCeeeCCCCCCCCCCceEE-EECCeE
Q 024009 10 LGMVTDGRYIYVVTGQYGP-------------------QCRGPTAHTFVLDTETKKWQDLPPLPVPRYAPATQ-LWRGRL 69 (274)
Q Consensus 10 ~~~~~~~~~iyv~GG~~~~-------------------~~~~~~~~~~~~d~~~~~W~~~~~~~~~r~~~~~~-~~~~~i 69 (274)
|.++...+++.++-..+.. .+.++...--.||+.+++++.+.-. .-.++.+-+ .-+|++
T Consensus 2 h~~~~~~~~v~~~d~t~~g~s~~~~~~~~c~~~~~~~~~~~d~~a~s~~yD~~tn~~rpl~v~-td~FCSgg~~L~dG~l 80 (243)
T PF07250_consen 2 HMALLHNNKVIMFDRTNFGPSNISLPDGRCRDNPEDNALKFDGPAHSVEYDPNTNTFRPLTVQ-TDTFCSGGAFLPDGRL 80 (243)
T ss_pred eEeEccCCEEEEEeCCCcccccccCCCCccccCccccccccCceEEEEEEecCCCcEEeccCC-CCCcccCcCCCCCCCE
Confidence 5666778888888653210 0112333455899999999887642 222332223 338999
Q ss_pred EEEcCCCCCCCCCCccceEeeeecCCCCCCceeecc-CCCCCCCcceeEE-eCCEEEEEccCCCCCCCCCCCCccccccC
Q 024009 70 HVMGGSGENRYTPEVDHWSLAVKDGKPLEKEWRTEI-PIPRGGPHRACVV-VDDRLLVIGGQEGDFMAKPGSPIFKCSRR 147 (274)
Q Consensus 70 yv~GG~~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~-~~p~~~~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~~~~~~ 147 (274)
.+.||... ....+..|+.. . +..+..|.+.. .|...|...++.. -+|+++|+||.....
T Consensus 81 l~tGG~~~--G~~~ir~~~p~--~-~~~~~~w~e~~~~m~~~RWYpT~~~L~DG~vlIvGG~~~~t-------------- 141 (243)
T PF07250_consen 81 LQTGGDND--GNKAIRIFTPC--T-SDGTCDWTESPNDMQSGRWYPTATTLPDGRVLIVGGSNNPT-------------- 141 (243)
T ss_pred EEeCCCCc--cccceEEEecC--C-CCCCCCceECcccccCCCccccceECCCCCEEEEeCcCCCc--------------
Confidence 99999754 22445555521 1 11246798865 4777776666554 588999999987431
Q ss_pred ceeecCceEEe-CC------CCCeEecCCC--CCCCccceeeEEEeCCEEEEEeccCCCCCCcccccccCceEEEEcCCC
Q 024009 148 NEVVYDDVYML-DD------EMKWKVLPSM--PKPDSHIEFAWVLVNNSIVIVGGTTEKHPTTKKMVLVGEIFQFNLNTL 218 (274)
Q Consensus 148 ~~~~~~~~~~~-d~------~~~W~~~~~~--~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~i~~yd~~~~ 218 (274)
|.| ++ ...|..+... ..+....-.....-+++||+++.. .-..||++++
T Consensus 142 --------~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~--------------~s~i~d~~~n 199 (243)
T PF07250_consen 142 --------YEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANR--------------GSIIYDYKTN 199 (243)
T ss_pred --------ccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcC--------------CcEEEeCCCC
Confidence 111 11 1122222211 112222224557778999999864 6778899999
Q ss_pred ce-EEeccCCCc
Q 024009 219 KW-HVIGKLPYR 229 (274)
Q Consensus 219 ~W-~~~~~~p~~ 229 (274)
++ ++++.+|..
T Consensus 200 ~v~~~lP~lPg~ 211 (243)
T PF07250_consen 200 TVVRTLPDLPGG 211 (243)
T ss_pred eEEeeCCCCCCC
Confidence 87 678888854
No 45
>PLN02772 guanylate kinase
Probab=98.61 E-value=2.2e-07 Score=79.32 Aligned_cols=70 Identities=20% Similarity=0.242 Sum_probs=59.9
Q ss_pred CCcCceeeEEeCCEEEEEcCcCCCCCCCCCCeeEEEECCCCCeeeC---CCCCCCCCCceEEEE-CCeEEEEcCCC
Q 024009 5 MAHSHLGMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDL---PPLPVPRYAPATQLW-RGRLHVMGGSG 76 (274)
Q Consensus 5 ~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~---~~~~~~r~~~~~~~~-~~~iyv~GG~~ 76 (274)
.++.+++++++++++||+||.+... ...+.+++||..+++|..- ...|.+|.+|+++.+ +++|+|+++-.
T Consensus 23 ~~~~~~tav~igdk~yv~GG~~d~~--~~~~~v~i~D~~t~~W~~P~V~G~~P~~r~GhSa~v~~~~rilv~~~~~ 96 (398)
T PLN02772 23 KPKNRETSVTIGDKTYVIGGNHEGN--TLSIGVQILDKITNNWVSPIVLGTGPKPCKGYSAVVLNKDRILVIKKGS 96 (398)
T ss_pred CCCCcceeEEECCEEEEEcccCCCc--cccceEEEEECCCCcEecccccCCCCCCCCcceEEEECCceEEEEeCCC
Confidence 4788999999999999999987633 2468999999999999885 477899999999999 67999998654
No 46
>PF13854 Kelch_5: Kelch motif
Probab=98.44 E-value=5.4e-07 Score=51.96 Aligned_cols=42 Identities=14% Similarity=0.131 Sum_probs=33.7
Q ss_pred CCCccceeeeEEEcCEEEEEccccCCCCCCCCceeecCCeeeeeeccC
Q 024009 226 LPYRVKTTLAGYWNGWLYFTSGQRDKGPDDPAPRKVHGDMWRTKLLLN 273 (274)
Q Consensus 226 ~p~~~~~~~~~~~~~~l~~~GG~~~~~~~~~~~~~~~~~~W~~~~~~~ 273 (274)
+|.+|..|+++.++++|||+||... .+.. ..+|+|+++++.|
T Consensus 1 ~P~~R~~hs~~~~~~~iyi~GG~~~---~~~~---~~~d~~~l~l~sf 42 (42)
T PF13854_consen 1 IPSPRYGHSAVVVGNNIYIFGGYSG---NNNS---YSNDLYVLDLPSF 42 (42)
T ss_pred CCCCccceEEEEECCEEEEEcCccC---CCCC---EECcEEEEECCCC
Confidence 5889999999999999999999874 1111 2489999998764
No 47
>PLN02772 guanylate kinase
Probab=98.27 E-value=5.2e-06 Score=71.01 Aligned_cols=67 Identities=16% Similarity=0.143 Sum_probs=56.1
Q ss_pred eeEEEeCCEEEEEeccCCCCCCcccccccCceEEEEcCCCceEEe---ccCCCccceeeeEEE-cCEEEEEccccCC
Q 024009 179 FAWVLVNNSIVIVGGTTEKHPTTKKMVLVGEIFQFNLNTLKWHVI---GKLPYRVKTTLAGYW-NGWLYFTSGQRDK 251 (274)
Q Consensus 179 ~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~i~~yd~~~~~W~~~---~~~p~~~~~~~~~~~-~~~l~~~GG~~~~ 251 (274)
.+++..++++||+||...... ..+.+++||+.+.+|... ++.|.+|.+|+++++ +++|+|+++...+
T Consensus 28 ~tav~igdk~yv~GG~~d~~~------~~~~v~i~D~~t~~W~~P~V~G~~P~~r~GhSa~v~~~~rilv~~~~~~~ 98 (398)
T PLN02772 28 ETSVTIGDKTYVIGGNHEGNT------LSIGVQILDKITNNWVSPIVLGTGPKPCKGYSAVVLNKDRILVIKKGSAP 98 (398)
T ss_pred ceeEEECCEEEEEcccCCCcc------ccceEEEEECCCCcEecccccCCCCCCCCcceEEEECCceEEEEeCCCCC
Confidence 466899999999999766442 356999999999999863 788999999999999 6899999876554
No 48
>PF03089 RAG2: Recombination activating protein 2; InterPro: IPR004321 The variable portion of the genes encoding immunoglobulins and T cell receptors are assembled from component V, D, and J DNA segments by a site-specific recombination reaction termed V(D)J recombination. V(D)J recombination is targeted to specific sites on the chromosome by recombination signal sequences (RSSs) that flank antigen receptor gene segments. The RSS consists of a conserved heptamer (consensus, 5'-CACAGTG-3') and nonamer (consensus, 5'-ACAAAAACC-3') separated by a spacer of either 12 or 23 bp. Efficient recombination occurs between a 12-RSS and a 23-RSS, a restriction known as the 12/23 rule. V(D)J recombination can be divided into two phases, DNA cleavage and DNA joining. DNA cleavage requires two lymphocyte-specific factors, the products of the recombination activating genes, RAG1 and RAG2, which together recognise the RSSs and create double strand breaks at the RSS-coding segment junctions []. RAG-mediated DNA cleavage occurs in a synaptic complex termed the paired complex, which is constituted from two distinct RSS-RAG complexes, a 12-SC and a 23-SC (where SC stands for signal complex). The DNA cleavage reaction involves two distinct enzymatic steps, initial nicking that creates a 3'-OH between a coding segment and its RSS, followed by hairpin formation in which the newly created 3'-OH attacks a phosphodiester bond on the opposite DNA strand. This generates a blunt, 5' phosphorylated signal end containing all of the RSS elements, and a covalently sealed hairpin coding end. The second phase of V(D)J recombination, in which broken DNA fragments are processed and joined, is less well characterised. Signal ends are typically joined precisely to form a signal joint, whereas joining of the coding ends requires the hairpin structure to be opened and typically involves nucleotide addition and deletion before formation of the coding joint. The factors involved in these processes include ubiquitously expressed proteins involved in the repair of DNA double strand breaks by nonhomologous end joining, terminal deoxynucleotidyl transferase, and Artemis protein. In addition to their critical roles in RSS recognition and DNA cleavage, the RAG proteins may perform two distinct types of functions in the postcleavage phase of V(D)J. A structural function has been inferred from the finding that, after DNA cleavage in vitro, the DNA ends remain associated with the RAG proteins in a "four end" complex known as the cleaved signal complex. After release of the coding ends in vitro, and after coding joint formation in vivo, the RAG proteins remain in a stable signal end complex (SEC) containing the two signal ends. These postcleavage complexes may serve as essential scaffolds for the second phase of the reaction, with the RAG proteins acting to organise the DNA processing and joining events. The second type of RAG protein-mediated postcleavage activity is the catalysis of phosphodiester bond hydrolysis and strand transfer reactions. The RAG proteins are capable of opening hairpin coding ends in vitro. The RAG proteins also show 3' flap endonuclease activity that may contribute to coding end processing/joining and can utilise the 3' OH group on the signal ends to attack hairpin coding ends (forming hybrid or open/shut joints) or virtually any DNA duplex (forming a transposition product).; GO: 0003677 DNA binding, 0006310 DNA recombination, 0005634 nucleus
Probab=98.21 E-value=0.00015 Score=58.44 Aligned_cols=112 Identities=15% Similarity=0.258 Sum_probs=64.5
Q ss_pred EEEE-cCcCCCCCCCCCCeeEEEECCCCCe-----------eeCCCCCCCCCCceEEEE--CC--eEEEEcCCCCCCC-C
Q 024009 19 IYVV-TGQYGPQCRGPTAHTFVLDTETKKW-----------QDLPPLPVPRYAPATQLW--RG--RLHVMGGSGENRY-T 81 (274)
Q Consensus 19 iyv~-GG~~~~~~~~~~~~~~~~d~~~~~W-----------~~~~~~~~~r~~~~~~~~--~~--~iyv~GG~~~~~~-~ 81 (274)
.|+| ||++.+. +..+++++....+.-- +.+..+|.+|++|++.++ .| ...+|||+...-. .
T Consensus 40 ~YlIHGGrTPNN--ElS~~LY~ls~~s~~cNkK~tl~C~EKeLvGdvP~aRYGHt~~vV~SrGKta~VlFGGRSY~P~~q 117 (337)
T PF03089_consen 40 QYLIHGGRTPNN--ELSSSLYILSVDSRGCNKKVTLCCQEKELVGDVPEARYGHTINVVHSRGKTACVLFGGRSYMPPGQ 117 (337)
T ss_pred eEEecCCcCCCc--ccccceEEEEeecCCCCceeEEEEecceecCCCCcccccceEEEEEECCcEEEEEECCcccCCccc
Confidence 4655 8877655 3456777766554321 235789999999999987 33 4677999864321 1
Q ss_pred CCccceEee------eecCCCCCCcee--eccCCCCCCCcceeEEeCCEEEEEccCCCC
Q 024009 82 PEVDHWSLA------VKDGKPLEKEWR--TEIPIPRGGPHRACVVVDDRLLVIGGQEGD 132 (274)
Q Consensus 82 ~~~~~~~~~------~~~~d~~~~~W~--~~~~~p~~~~~~~~~~~~~~iyv~GG~~~~ 132 (274)
.+.+.|+.. +|-.|..-.-.+ .++-+..+...|.+..-++.+|++||+.-.
T Consensus 118 RTTenWNsVvDC~P~VfLiDleFGC~tah~lpEl~dG~SFHvslar~D~VYilGGHsl~ 176 (337)
T PF03089_consen 118 RTTENWNSVVDCPPQVFLIDLEFGCCTAHTLPELQDGQSFHVSLARNDCVYILGGHSLE 176 (337)
T ss_pred cchhhcceeccCCCeEEEEeccccccccccchhhcCCeEEEEEEecCceEEEEccEEcc
Confidence 233444431 111111111111 122234455556677778999999999754
No 49
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=98.07 E-value=0.00021 Score=57.68 Aligned_cols=138 Identities=15% Similarity=0.187 Sum_probs=85.0
Q ss_pred ecCCCCCCceeeccCCCCCCCcceeEEeCCEEEEEccCCCCCCCCCCCCccccccCceeecCceEEeC-----CCCCeEe
Q 024009 92 KDGKPLEKEWRTEIPIPRGGPHRACVVVDDRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYDDVYMLD-----DEMKWKV 166 (274)
Q Consensus 92 ~~~d~~~~~W~~~~~~p~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d-----~~~~W~~ 166 (274)
..||+.+++++.+....-..|...+..-+|++.+.||..+.. ..+-.|+ .+..|..
T Consensus 49 ~~yD~~tn~~rpl~v~td~FCSgg~~L~dG~ll~tGG~~~G~-------------------~~ir~~~p~~~~~~~~w~e 109 (243)
T PF07250_consen 49 VEYDPNTNTFRPLTVQTDTFCSGGAFLPDGRLLQTGGDNDGN-------------------KAIRIFTPCTSDGTCDWTE 109 (243)
T ss_pred EEEecCCCcEEeccCCCCCcccCcCCCCCCCEEEeCCCCccc-------------------cceEEEecCCCCCCCCceE
Confidence 355689999998877666677666777899999999986531 1222333 3567987
Q ss_pred cC-CCCCCCccceeeEEEeCCEEEEEeccCCCCCCcccccccCceEEEEcCC-----CceEEec----cCCCccceeeeE
Q 024009 167 LP-SMPKPDSHIEFAWVLVNNSIVIVGGTTEKHPTTKKMVLVGEIFQFNLNT-----LKWHVIG----KLPYRVKTTLAG 236 (274)
Q Consensus 167 ~~-~~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~i~~yd~~~-----~~W~~~~----~~p~~~~~~~~~ 236 (274)
.+ .|-.+|.+.. ....-+++++|+||.... ..+.+.... ..|..+. ..+.....+...
T Consensus 110 ~~~~m~~~RWYpT-~~~L~DG~vlIvGG~~~~-----------t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~l 177 (243)
T PF07250_consen 110 SPNDMQSGRWYPT-ATTLPDGRVLIVGGSNNP-----------TYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHL 177 (243)
T ss_pred CcccccCCCcccc-ceECCCCCEEEEeCcCCC-----------cccccCCccCCCCceeeecchhhhccCccccCceEEE
Confidence 76 5788888743 346678999999998622 233333211 1222222 123333344445
Q ss_pred EEcCEEEEEccccCCCCCCCCceeecCCee
Q 024009 237 YWNGWLYFTSGQRDKGPDDPAPRKVHGDMW 266 (274)
Q Consensus 237 ~~~~~l~~~GG~~~~~~~~~~~~~~~~~~W 266 (274)
.-+|+|++++.. ...+++..++.+
T Consensus 178 lPdG~lFi~an~------~s~i~d~~~n~v 201 (243)
T PF07250_consen 178 LPDGNLFIFANR------GSIIYDYKTNTV 201 (243)
T ss_pred cCCCCEEEEEcC------CcEEEeCCCCeE
Confidence 558999999863 334555445544
No 50
>TIGR01640 F_box_assoc_1 F-box protein interaction domain. This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.
Probab=97.84 E-value=0.005 Score=49.67 Aligned_cols=181 Identities=13% Similarity=0.118 Sum_probs=97.2
Q ss_pred CeeEEEECCCCCeeeCCCCCCCCC---Cc-eEEEE----CC-eEEEEcCCCCCCCCCCccceEeeeecCCCCCCceeecc
Q 024009 35 AHTFVLDTETKKWQDLPPLPVPRY---AP-ATQLW----RG-RLHVMGGSGENRYTPEVDHWSLAVKDGKPLEKEWRTEI 105 (274)
Q Consensus 35 ~~~~~~d~~~~~W~~~~~~~~~r~---~~-~~~~~----~~-~iyv~GG~~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~ 105 (274)
..+.+.||.|++|..+|+.+.++. .+ ....+ +. ++..+...........+++|+ ..+++|+.+.
T Consensus 14 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~G~d~~~~~YKVv~~~~~~~~~~~~~~~Vys-------~~~~~Wr~~~ 86 (230)
T TIGR01640 14 KRLVVWNPSTGQSRWLPTPKSRRSNKESDTYFLGYDPIEKQYKVLCFSDRSGNRNQSEHQVYT-------LGSNSWRTIE 86 (230)
T ss_pred CcEEEECCCCCCEEecCCCCCcccccccceEEEeecccCCcEEEEEEEeecCCCCCccEEEEE-------eCCCCccccc
Confidence 568999999999999986543211 11 11111 12 333333211111223444554 5788999977
Q ss_pred CCCCC-CCcceeEEeCCEEEEEccCCCCCCCCCCCCccccccCceeecCceEEeC-CCCCeEecCCCCCCCc--cceeeE
Q 024009 106 PIPRG-GPHRACVVVDDRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYDDVYMLD-DEMKWKVLPSMPKPDS--HIEFAW 181 (274)
Q Consensus 106 ~~p~~-~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d-~~~~W~~~~~~~~~~~--~~~~~~ 181 (274)
..+.. ......+..+|.||-+.-..... . ...+..|| .+++|...-++|.... .....+
T Consensus 87 ~~~~~~~~~~~~v~~~G~lyw~~~~~~~~--------------~---~~~IvsFDl~~E~f~~~i~~P~~~~~~~~~~~L 149 (230)
T TIGR01640 87 CSPPHHPLKSRGVCINGVLYYLAYTLKTN--------------P---DYFIVSFDVSSERFKEFIPLPCGNSDSVDYLSL 149 (230)
T ss_pred cCCCCccccCCeEEECCEEEEEEEECCCC--------------C---cEEEEEEEcccceEeeeeecCccccccccceEE
Confidence 43322 11123667899988886432210 0 01588889 8889985223343322 112456
Q ss_pred EEeCCEEEEEeccCCCCCCcccccccCceEEEE-cCCCceEEeccCCC---c--cc--eeeeEEEcCEEEEEcc
Q 024009 182 VLVNNSIVIVGGTTEKHPTTKKMVLVGEIFQFN-LNTLKWHVIGKLPY---R--VK--TTLAGYWNGWLYFTSG 247 (274)
Q Consensus 182 ~~~~~~l~v~GG~~~~~~~~~~~~~~~~i~~yd-~~~~~W~~~~~~p~---~--~~--~~~~~~~~~~l~~~GG 247 (274)
+..+++|.++........ -+||..+ -.+.+|+..-.++. . +. ....+..+++|++.-.
T Consensus 150 ~~~~G~L~~v~~~~~~~~--------~~IWvl~d~~~~~W~k~~~i~~~~~~~~~~~~~~~~~~~~g~I~~~~~ 215 (230)
T TIGR01640 150 INYKGKLAVLKQKKDTNN--------FDLWVLNDAGKQEWSKLFTVPIPPLPDLVDDNFLSGFTDKGEIVLCCE 215 (230)
T ss_pred EEECCEEEEEEecCCCCc--------EEEEEECCCCCCceeEEEEEcCcchhhhhhheeEeEEeeCCEEEEEeC
Confidence 778899988865432110 1677775 33567987633331 1 11 1233445788887754
No 51
>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function.
Probab=97.77 E-value=0.0025 Score=54.67 Aligned_cols=133 Identities=21% Similarity=0.248 Sum_probs=83.7
Q ss_pred EEeCCEEEEEcCcCCCCCCCCCCeeEEEECCCCCeeeCCCCCCCCCCceEEEECCeEEEEcCCCCCCCCCCccceEeeee
Q 024009 13 VTDGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLPVPRYAPATQLWRGRLHVMGGSGENRYTPEVDHWSLAVK 92 (274)
Q Consensus 13 ~~~~~~iyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~ 92 (274)
+..+++|+.++.. ..+.+||..+..-...|.++.+.....++.++++||++..............-.++++
T Consensus 73 al~gskIv~~d~~---------~~t~vyDt~t~av~~~P~l~~pk~~pisv~VG~~LY~m~~~~~~~~~~~~~~~~FE~l 143 (342)
T PF07893_consen 73 ALHGSKIVAVDQS---------GRTLVYDTDTRAVATGPRLHSPKRCPISVSVGDKLYAMDRSPFPEPAGRPDFPCFEAL 143 (342)
T ss_pred EecCCeEEEEcCC---------CCeEEEECCCCeEeccCCCCCCCcceEEEEeCCeEEEeeccCccccccCccceeEEEe
Confidence 3359999998542 4478999999988888888877777788888999999987643322111000022233
Q ss_pred cCC--------CCCCceeeccCCCCCCCc-------ceeEEe-CCEEEE-EccCCCCCCCCCCCCccccccCceeecCce
Q 024009 93 DGK--------PLEKEWRTEIPIPRGGPH-------RACVVV-DDRLLV-IGGQEGDFMAKPGSPIFKCSRRNEVVYDDV 155 (274)
Q Consensus 93 ~~d--------~~~~~W~~~~~~p~~~~~-------~~~~~~-~~~iyv-~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (274)
.|+ .....|+.+++.|..... .+-+++ +..|+| ..+.. .-.
T Consensus 144 ~~~~~~~~~~~~~~w~W~~LP~PPf~~~~~~~~~~i~sYavv~g~~I~vS~~~~~----------------------~GT 201 (342)
T PF07893_consen 144 VYRPPPDDPSPEESWSWRSLPPPPFVRDRRYSDYRITSYAVVDGRTIFVSVNGRR----------------------WGT 201 (342)
T ss_pred ccccccccccCCCcceEEcCCCCCccccCCcccceEEEEEEecCCeEEEEecCCc----------------------eEE
Confidence 222 455678888776644322 233455 556887 33321 137
Q ss_pred EEeC-CCCCeEecCCCCCCCcc
Q 024009 156 YMLD-DEMKWKVLPSMPKPDSH 176 (274)
Q Consensus 156 ~~~d-~~~~W~~~~~~~~~~~~ 176 (274)
|.|| .+.+|+...+...|-.+
T Consensus 202 ysfDt~~~~W~~~GdW~LPF~G 223 (342)
T PF07893_consen 202 YSFDTESHEWRKHGDWMLPFHG 223 (342)
T ss_pred EEEEcCCcceeeccceecCcCC
Confidence 8999 88899999865444433
No 52
>PF03089 RAG2: Recombination activating protein 2; InterPro: IPR004321 The variable portion of the genes encoding immunoglobulins and T cell receptors are assembled from component V, D, and J DNA segments by a site-specific recombination reaction termed V(D)J recombination. V(D)J recombination is targeted to specific sites on the chromosome by recombination signal sequences (RSSs) that flank antigen receptor gene segments. The RSS consists of a conserved heptamer (consensus, 5'-CACAGTG-3') and nonamer (consensus, 5'-ACAAAAACC-3') separated by a spacer of either 12 or 23 bp. Efficient recombination occurs between a 12-RSS and a 23-RSS, a restriction known as the 12/23 rule. V(D)J recombination can be divided into two phases, DNA cleavage and DNA joining. DNA cleavage requires two lymphocyte-specific factors, the products of the recombination activating genes, RAG1 and RAG2, which together recognise the RSSs and create double strand breaks at the RSS-coding segment junctions []. RAG-mediated DNA cleavage occurs in a synaptic complex termed the paired complex, which is constituted from two distinct RSS-RAG complexes, a 12-SC and a 23-SC (where SC stands for signal complex). The DNA cleavage reaction involves two distinct enzymatic steps, initial nicking that creates a 3'-OH between a coding segment and its RSS, followed by hairpin formation in which the newly created 3'-OH attacks a phosphodiester bond on the opposite DNA strand. This generates a blunt, 5' phosphorylated signal end containing all of the RSS elements, and a covalently sealed hairpin coding end. The second phase of V(D)J recombination, in which broken DNA fragments are processed and joined, is less well characterised. Signal ends are typically joined precisely to form a signal joint, whereas joining of the coding ends requires the hairpin structure to be opened and typically involves nucleotide addition and deletion before formation of the coding joint. The factors involved in these processes include ubiquitously expressed proteins involved in the repair of DNA double strand breaks by nonhomologous end joining, terminal deoxynucleotidyl transferase, and Artemis protein. In addition to their critical roles in RSS recognition and DNA cleavage, the RAG proteins may perform two distinct types of functions in the postcleavage phase of V(D)J. A structural function has been inferred from the finding that, after DNA cleavage in vitro, the DNA ends remain associated with the RAG proteins in a "four end" complex known as the cleaved signal complex. After release of the coding ends in vitro, and after coding joint formation in vivo, the RAG proteins remain in a stable signal end complex (SEC) containing the two signal ends. These postcleavage complexes may serve as essential scaffolds for the second phase of the reaction, with the RAG proteins acting to organise the DNA processing and joining events. The second type of RAG protein-mediated postcleavage activity is the catalysis of phosphodiester bond hydrolysis and strand transfer reactions. The RAG proteins are capable of opening hairpin coding ends in vitro. The RAG proteins also show 3' flap endonuclease activity that may contribute to coding end processing/joining and can utilise the 3' OH group on the signal ends to attack hairpin coding ends (forming hybrid or open/shut joints) or virtually any DNA duplex (forming a transposition product).; GO: 0003677 DNA binding, 0006310 DNA recombination, 0005634 nucleus
Probab=97.62 E-value=0.0019 Score=52.38 Aligned_cols=86 Identities=10% Similarity=-0.004 Sum_probs=62.0
Q ss_pred CCCCcCceeeEEe--CC--EEEEEcCcCCC--CC---------CCCCCeeEEEECCCCCeeeC--CCCCCCCCCceEEEE
Q 024009 3 REMAHSHLGMVTD--GR--YIYVVTGQYGP--QC---------RGPTAHTFVLDTETKKWQDL--PPLPVPRYAPATQLW 65 (274)
Q Consensus 3 ~~~~r~~~~~~~~--~~--~iyv~GG~~~~--~~---------~~~~~~~~~~d~~~~~W~~~--~~~~~~r~~~~~~~~ 65 (274)
.|.+|++|++-++ .+ -+.+|||+..- .+ .++...+|.+|++-+..+.. +.+....++|.+..-
T Consensus 84 vP~aRYGHt~~vV~SrGKta~VlFGGRSY~P~~qRTTenWNsVvDC~P~VfLiDleFGC~tah~lpEl~dG~SFHvslar 163 (337)
T PF03089_consen 84 VPEARYGHTINVVHSRGKTACVLFGGRSYMPPGQRTTENWNSVVDCPPQVFLIDLEFGCCTAHTLPELQDGQSFHVSLAR 163 (337)
T ss_pred CCcccccceEEEEEECCcEEEEEECCcccCCccccchhhcceeccCCCeEEEEeccccccccccchhhcCCeEEEEEEec
Confidence 4789999998877 22 26888998421 11 25677899999998876654 677888899999999
Q ss_pred CCeEEEEcCCCCCCCCCCccceE
Q 024009 66 RGRLHVMGGSGENRYTPEVDHWS 88 (274)
Q Consensus 66 ~~~iyv~GG~~~~~~~~~~~~~~ 88 (274)
++.+|++||............|.
T Consensus 164 ~D~VYilGGHsl~sd~Rpp~l~r 186 (337)
T PF03089_consen 164 NDCVYILGGHSLESDSRPPRLYR 186 (337)
T ss_pred CceEEEEccEEccCCCCCCcEEE
Confidence 99999999975443333344444
No 53
>TIGR01640 F_box_assoc_1 F-box protein interaction domain. This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.
Probab=97.42 E-value=0.0085 Score=48.34 Aligned_cols=149 Identities=16% Similarity=0.223 Sum_probs=87.9
Q ss_pred CeeEEEECCCCCeeeCCCCCCC-CCCceEEEECCeEEEEcCCCCCCCCCCccceEeeeecCCCCCCceeeccCCCCCC--
Q 024009 35 AHTFVLDTETKKWQDLPPLPVP-RYAPATQLWRGRLHVMGGSGENRYTPEVDHWSLAVKDGKPLEKEWRTEIPIPRGG-- 111 (274)
Q Consensus 35 ~~~~~~d~~~~~W~~~~~~~~~-r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~~-- 111 (274)
..+.+|+..++.|+.+...+.. ......+.++|.||-+.-..... . + ..+..+|..+.+|+..-++|...
T Consensus 70 ~~~~Vys~~~~~Wr~~~~~~~~~~~~~~~v~~~G~lyw~~~~~~~~--~--~---~~IvsFDl~~E~f~~~i~~P~~~~~ 142 (230)
T TIGR01640 70 SEHQVYTLGSNSWRTIECSPPHHPLKSRGVCINGVLYYLAYTLKTN--P--D---YFIVSFDVSSERFKEFIPLPCGNSD 142 (230)
T ss_pred ccEEEEEeCCCCccccccCCCCccccCCeEEECCEEEEEEEECCCC--C--c---EEEEEEEcccceEeeeeecCccccc
Confidence 5788999999999998743322 12222677899999887432111 1 0 13555668899999522334322
Q ss_pred --CcceeEEeCCEEEEEccCCCCCCCCCCCCccccccCceeecCceEEeC--CCCCeEecCCCCC-----CCccceeeEE
Q 024009 112 --PHRACVVVDDRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYDDVYMLD--DEMKWKVLPSMPK-----PDSHIEFAWV 182 (274)
Q Consensus 112 --~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d--~~~~W~~~~~~~~-----~~~~~~~~~~ 182 (274)
....++.++|+|.++...... . .-++|..+ .+..|++.-.++. -........+
T Consensus 143 ~~~~~~L~~~~G~L~~v~~~~~~-------------~-----~~~IWvl~d~~~~~W~k~~~i~~~~~~~~~~~~~~~~~ 204 (230)
T TIGR01640 143 SVDYLSLINYKGKLAVLKQKKDT-------------N-----NFDLWVLNDAGKQEWSKLFTVPIPPLPDLVDDNFLSGF 204 (230)
T ss_pred cccceEEEEECCEEEEEEecCCC-------------C-----cEEEEEECCCCCCceeEEEEEcCcchhhhhhheeEeEE
Confidence 134567788998887654321 0 14788885 4567987643321 1111123346
Q ss_pred EeCCEEEEEeccCCCCCCcccccccCceEEEEcCCC
Q 024009 183 LVNNSIVIVGGTTEKHPTTKKMVLVGEIFQFNLNTL 218 (274)
Q Consensus 183 ~~~~~l~v~GG~~~~~~~~~~~~~~~~i~~yd~~~~ 218 (274)
..+++|++.... ... ..+..||++++
T Consensus 205 ~~~g~I~~~~~~-~~~---------~~~~~y~~~~~ 230 (230)
T TIGR01640 205 TDKGEIVLCCED-ENP---------FYIFYYNVGEN 230 (230)
T ss_pred eeCCEEEEEeCC-CCc---------eEEEEEeccCC
Confidence 677888887653 111 14899998874
No 54
>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function.
Probab=96.31 E-value=0.58 Score=40.23 Aligned_cols=129 Identities=16% Similarity=0.247 Sum_probs=72.6
Q ss_pred ECCeEEEEcCCCCCCCCCCccceEeeeecCCCCCCceeeccCCCCCCCcceeEEeCCEEEEEccCCCCCCCCCCCCcccc
Q 024009 65 WRGRLHVMGGSGENRYTPEVDHWSLAVKDGKPLEKEWRTEIPIPRGGPHRACVVVDDRLLVIGGQEGDFMAKPGSPIFKC 144 (274)
Q Consensus 65 ~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~ 144 (274)
.+.+|+.++.. ...-+|+ +.+..-...+.++.+.....++.++++||++.......... .
T Consensus 75 ~gskIv~~d~~------~~t~vyD-------t~t~av~~~P~l~~pk~~pisv~VG~~LY~m~~~~~~~~~~-------~ 134 (342)
T PF07893_consen 75 HGSKIVAVDQS------GRTLVYD-------TDTRAVATGPRLHSPKRCPISVSVGDKLYAMDRSPFPEPAG-------R 134 (342)
T ss_pred cCCeEEEEcCC------CCeEEEE-------CCCCeEeccCCCCCCCcceEEEEeCCeEEEeeccCcccccc-------C
Confidence 37788888543 2223333 56655555666666555556677899999997654331100 0
Q ss_pred ccCceeecCceEEeC---------CCCCeEecCCCCCCCccc-----eeeEEEe-CCEEEE-EeccCCCCCCcccccccC
Q 024009 145 SRRNEVVYDDVYMLD---------DEMKWKVLPSMPKPDSHI-----EFAWVLV-NNSIVI-VGGTTEKHPTTKKMVLVG 208 (274)
Q Consensus 145 ~~~~~~~~~~~~~~d---------~~~~W~~~~~~~~~~~~~-----~~~~~~~-~~~l~v-~GG~~~~~~~~~~~~~~~ 208 (274)
.. ...| ++..|+ ..-.|+.+|+.|-..... -.+.+++ +.+|+| +-+.. .
T Consensus 135 ~~-~~~F--E~l~~~~~~~~~~~~~~w~W~~LP~PPf~~~~~~~~~~i~sYavv~g~~I~vS~~~~~------------~ 199 (342)
T PF07893_consen 135 PD-FPCF--EALVYRPPPDDPSPEESWSWRSLPPPPFVRDRRYSDYRITSYAVVDGRTIFVSVNGRR------------W 199 (342)
T ss_pred cc-ceeE--EEeccccccccccCCCcceEEcCCCCCccccCCcccceEEEEEEecCCeEEEEecCCc------------e
Confidence 00 0011 122221 233689988765444321 1344555 678888 43321 1
Q ss_pred ceEEEEcCCCceEEecc--CCC
Q 024009 209 EIFQFNLNTLKWHVIGK--LPY 228 (274)
Q Consensus 209 ~i~~yd~~~~~W~~~~~--~p~ 228 (274)
..|.||+.+.+|+.+++ ||.
T Consensus 200 GTysfDt~~~~W~~~GdW~LPF 221 (342)
T PF07893_consen 200 GTYSFDTESHEWRKHGDWMLPF 221 (342)
T ss_pred EEEEEEcCCcceeeccceecCc
Confidence 48999999999999854 453
No 55
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=96.15 E-value=0.21 Score=41.52 Aligned_cols=119 Identities=17% Similarity=0.142 Sum_probs=65.9
Q ss_pred EEEcCcCCCCCCCCCCeeEEEECCCCCeeeCCCCCCCCCCceEEEE-CCeEEEEcCCCCCC-CCCCccceEeeeecCCCC
Q 024009 20 YVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLPVPRYAPATQLW-RGRLHVMGGSGENR-YTPEVDHWSLAVKDGKPL 97 (274)
Q Consensus 20 yv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~-~~~~~~~~~~~~~~~d~~ 97 (274)
||-|-++..... ....+..||..+.+|.....--... -.++... +++||+.|-..... .... +-.||..
T Consensus 2 ~VGG~F~~aGsL-~C~~lC~yd~~~~qW~~~g~~i~G~-V~~l~~~~~~~Llv~G~ft~~~~~~~~-------la~yd~~ 72 (281)
T PF12768_consen 2 YVGGSFTSAGSL-PCPGLCLYDTDNSQWSSPGNGISGT-VTDLQWASNNQLLVGGNFTLNGTNSSN-------LATYDFK 72 (281)
T ss_pred EEeeecCCCCCc-CCCEEEEEECCCCEeecCCCCceEE-EEEEEEecCCEEEEEEeeEECCCCcee-------EEEEecC
Confidence 444444433321 3578999999999999997641111 1233334 66777777433222 1112 2233477
Q ss_pred CCceeeccC-----CCCCCCcceeEE---eCCEEEEEccCCCCCCCCCCCCccccccCceeecCceEEeCCCCCeEecCC
Q 024009 98 EKEWRTEIP-----IPRGGPHRACVV---VDDRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYDDVYMLDDEMKWKVLPS 169 (274)
Q Consensus 98 ~~~W~~~~~-----~p~~~~~~~~~~---~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~W~~~~~ 169 (274)
+.+|..+.. +|.+.. +... -..++++.|.. ... ..-+..| ...+|..+..
T Consensus 73 ~~~w~~~~~~~s~~ipgpv~--a~~~~~~d~~~~~~aG~~-~~g------------------~~~l~~~-dGs~W~~i~~ 130 (281)
T PF12768_consen 73 NQTWSSLGGGSSNSIPGPVT--ALTFISNDGSNFWVAGRS-ANG------------------STFLMKY-DGSSWSSIGS 130 (281)
T ss_pred CCeeeecCCcccccCCCcEE--EEEeeccCCceEEEecee-cCC------------------CceEEEE-cCCceEeccc
Confidence 899988665 344432 2222 23357777664 221 2457777 5678988875
No 56
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=95.71 E-value=1.3 Score=38.80 Aligned_cols=153 Identities=17% Similarity=0.190 Sum_probs=82.5
Q ss_pred eeEEeCCEEEEEcCcCCCCCCCCCCeeEEEECCCCC--eeeCCCCC--------CCCCCceEEEECCeEEEEcCCCCCCC
Q 024009 11 GMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTETKK--WQDLPPLP--------VPRYAPATQLWRGRLHVMGGSGENRY 80 (274)
Q Consensus 11 ~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~d~~~~~--W~~~~~~~--------~~r~~~~~~~~~~~iyv~GG~~~~~~ 80 (274)
+.++.++++|+... ...++.+|..+++ |+.-..-. .++.....+..++++|+.+. +
T Consensus 64 sPvv~~~~vy~~~~---------~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~v~~~-~---- 129 (394)
T PRK11138 64 HPAVAYNKVYAADR---------AGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTVAGGKVYIGSE-K---- 129 (394)
T ss_pred ccEEECCEEEEECC---------CCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEEECCEEEEEcC-C----
Confidence 44677999999853 2468899988764 87642211 11223345566888887542 1
Q ss_pred CCCccceEeeeecCCCCCCceeeccCCCCCCCcceeEEeCCEEEEEccCCCCCCCCCCCCccccccCceeecCceEEeC-
Q 024009 81 TPEVDHWSLAVKDGKPLEKEWRTEIPIPRGGPHRACVVVDDRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYDDVYMLD- 159 (274)
Q Consensus 81 ~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d- 159 (274)
..+..++. +..+..|+...+-+ . ..+-++.++.+|+..+. ..++.+|
T Consensus 130 -g~l~ald~-----~tG~~~W~~~~~~~--~-~ssP~v~~~~v~v~~~~-----------------------g~l~ald~ 177 (394)
T PRK11138 130 -GQVYALNA-----EDGEVAWQTKVAGE--A-LSRPVVSDGLVLVHTSN-----------------------GMLQALNE 177 (394)
T ss_pred -CEEEEEEC-----CCCCCcccccCCCc--e-ecCCEEECCEEEEECCC-----------------------CEEEEEEc
Confidence 12233331 13455687643221 1 12335668888875431 3578887
Q ss_pred CC--CCeEecCCCCCCCccceeeEEEeCCEEEEEeccCCCCCCcccccccCceEEEEcCCCc--eEE
Q 024009 160 DE--MKWKVLPSMPKPDSHIEFAWVLVNNSIVIVGGTTEKHPTTKKMVLVGEIFQFNLNTLK--WHV 222 (274)
Q Consensus 160 ~~--~~W~~~~~~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~i~~yd~~~~~--W~~ 222 (274)
.+ ..|+.-...+........+-++.++.+|+..+ ...++.+|+++.+ |+.
T Consensus 178 ~tG~~~W~~~~~~~~~~~~~~~sP~v~~~~v~~~~~-------------~g~v~a~d~~~G~~~W~~ 231 (394)
T PRK11138 178 SDGAVKWTVNLDVPSLTLRGESAPATAFGGAIVGGD-------------NGRVSAVLMEQGQLIWQQ 231 (394)
T ss_pred cCCCEeeeecCCCCcccccCCCCCEEECCEEEEEcC-------------CCEEEEEEccCChhhhee
Confidence 44 45876544332111101222455677766432 1268888887764 764
No 57
>PF12217 End_beta_propel: Catalytic beta propeller domain of bacteriophage endosialidase; InterPro: IPR024428 This entry represents the beta propeller domain of endosialidases, which consists of catalytically active part of the enzymes. This core domain forms stable SDS-resistant trimers. There is a nested beta barrel domain in this domain. This domain is typically between 443 and 460 amino acids in length [].; PDB: 1V0E_B 1V0F_E 3JU4_A 3GVL_A 3GVK_B 3GVJ_A.
Probab=95.37 E-value=0.91 Score=36.87 Aligned_cols=224 Identities=12% Similarity=0.126 Sum_probs=91.4
Q ss_pred CceeeEEeCCEEEEEcCc-CCCCCCCCCCeeEEEEC---CCCCeeeC--CCCCC-------CCCCceEEEECCeEEEEcC
Q 024009 8 SHLGMVTDGRYIYVVTGQ-YGPQCRGPTAHTFVLDT---ETKKWQDL--PPLPV-------PRYAPATQLWRGRLHVMGG 74 (274)
Q Consensus 8 ~~~~~~~~~~~iyv~GG~-~~~~~~~~~~~~~~~d~---~~~~W~~~--~~~~~-------~r~~~~~~~~~~~iyv~GG 74 (274)
.+.++.+.++++|.+=-. +-.. ..+...+.+|. ..+.|+.- +.+|. ...-|+.+.+++.-|.+|=
T Consensus 76 HCmSMGv~~NRLfa~iEtR~~a~--~km~~~~Lw~RpMF~~spW~~teL~~~~~~~~a~~~vTe~HSFa~i~~~~fA~Gy 153 (367)
T PF12217_consen 76 HCMSMGVVGNRLFAVIETRTVAS--NKMVRAELWSRPMFHDSPWRITELGTIASFTSAGVAVTELHSFATIDDNQFAVGY 153 (367)
T ss_dssp E-B-EEEETTEEEEEEEEEETTT----EEEEEEEEEE-STTS--EEEEEES-TT--------SEEEEEEE-SSS-EEEEE
T ss_pred eeeeeeeecceeeEEEeehhhhh--hhhhhhhhhcccccccCCceeeecccccccccccceeeeeeeeeEecCCceeEEe
Confidence 467889999999877321 1111 22445566663 46678552 33332 3456888888888888874
Q ss_pred CCCCCCCCCccceEeeeecCCCCCCceeeccCC-CCCCCcceeEEeCCEEEEEc-cCCCCCCCCCCCCccccccCceeec
Q 024009 75 SGENRYTPEVDHWSLAVKDGKPLEKEWRTEIPI-PRGGPHRACVVVDDRLLVIG-GQEGDFMAKPGSPIFKCSRRNEVVY 152 (274)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~-p~~~~~~~~~~~~~~iyv~G-G~~~~~~~~~~~~~~~~~~~~~~~~ 152 (274)
..+.....++-.+.++.---.+..-.=+.++.. .+......+-.++++||+.- |..... .-
T Consensus 154 HnGD~sPRe~G~~yfs~~~~sp~~~vrr~i~sey~~~AsEPCvkyY~g~LyLtTRgt~~~~-----------------~G 216 (367)
T PF12217_consen 154 HNGDVSPRELGFLYFSDAFASPGVFVRRIIPSEYERNASEPCVKYYDGVLYLTTRGTLPTN-----------------PG 216 (367)
T ss_dssp EE-SSSS-EEEEEEETTTTT-TT--EEEE--GGG-TTEEEEEEEEETTEEEEEEEES-TTS-------------------
T ss_pred ccCCCCcceeeEEEecccccCCcceeeeechhhhccccccchhhhhCCEEEEEEcCcCCCC-----------------Cc
Confidence 332222222332222100000111111222221 12222223446799999984 332210 01
Q ss_pred CceEEeC-CCCCeEecCCCCCCCccceeeEEEeCCEEEEEeccCCCC-----CCccc---ccccCceEEE-----EcCCC
Q 024009 153 DDVYMLD-DEMKWKVLPSMPKPDSHIEFAWVLVNNSIVIVGGTTEKH-----PTTKK---MVLVGEIFQF-----NLNTL 218 (274)
Q Consensus 153 ~~~~~~d-~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~v~GG~~~~~-----~~~~~---~~~~~~i~~y-----d~~~~ 218 (274)
..+..-+ ....|..+.-. ....+...-.+..++.||++|-..... ...+| .+.-.-+.+. .+++-
T Consensus 217 S~L~rs~d~G~~w~slrfp-~nvHhtnlPFakvgD~l~mFgsERA~~EWE~G~~D~RY~~~yPRtF~~k~nv~~W~~d~~ 295 (367)
T PF12217_consen 217 SSLHRSDDNGQNWSSLRFP-NNVHHTNLPFAKVGDVLYMFGSERAENEWEGGEPDNRYRANYPRTFMLKVNVSDWSLDDV 295 (367)
T ss_dssp -EEEEESSTTSS-EEEE-T-T---SS---EEEETTEEEEEEE-SSTT-SSTT-----SS-B--EEEEEEEETTT---TT-
T ss_pred ceeeeecccCCchhhcccc-ccccccCCCceeeCCEEEEEeccccccccccCCCcccccccCCceEEEEeecccCCccce
Confidence 1223323 45568776532 333333355688999999999654321 11111 0011112222 45555
Q ss_pred ceEEe-ccCC------CccceeeeEEEcCEEE-EEccccCC
Q 024009 219 KWHVI-GKLP------YRVKTTLAGYWNGWLY-FTSGQRDK 251 (274)
Q Consensus 219 ~W~~~-~~~p------~~~~~~~~~~~~~~l~-~~GG~~~~ 251 (274)
+|..+ .++- ....-.++++.++.|| +|||++..
T Consensus 296 ew~nitdqIYqG~ivNSavGVGSv~~KD~~lyy~FGgED~~ 336 (367)
T PF12217_consen 296 EWVNITDQIYQGGIVNSAVGVGSVVVKDGWLYYIFGGEDFF 336 (367)
T ss_dssp --EEEEE-BB--SSS---SEEEEEEEETTEEEEEEEEB-S-
T ss_pred EEEEeecceeccccccccccceeEEEECCEEEEEecCcccC
Confidence 67666 2222 2223355666688887 88998763
No 58
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=95.32 E-value=0.27 Score=40.88 Aligned_cols=107 Identities=13% Similarity=0.203 Sum_probs=63.5
Q ss_pred CceEEeC-CCCCeEecCCCCCCCccceeeEEEe-CCEEEEEeccCCCCCCcccccccCceEEEEcCCCceEEecc-----
Q 024009 153 DDVYMLD-DEMKWKVLPSMPKPDSHIEFAWVLV-NNSIVIVGGTTEKHPTTKKMVLVGEIFQFNLNTLKWHVIGK----- 225 (274)
Q Consensus 153 ~~~~~~d-~~~~W~~~~~~~~~~~~~~~~~~~~-~~~l~v~GG~~~~~~~~~~~~~~~~i~~yd~~~~~W~~~~~----- 225 (274)
..+..|| .+.+|..+..--.+. -..+... +++|++.|-..-... -...+-.||.++.+|+.+..
T Consensus 16 ~~lC~yd~~~~qW~~~g~~i~G~---V~~l~~~~~~~Llv~G~ft~~~~------~~~~la~yd~~~~~w~~~~~~~s~~ 86 (281)
T PF12768_consen 16 PGLCLYDTDNSQWSSPGNGISGT---VTDLQWASNNQLLVGGNFTLNGT------NSSNLATYDFKNQTWSSLGGGSSNS 86 (281)
T ss_pred CEEEEEECCCCEeecCCCCceEE---EEEEEEecCCEEEEEEeeEECCC------CceeEEEEecCCCeeeecCCccccc
Confidence 5677777 899999887652221 1233433 677877775544331 12379999999999988744
Q ss_pred CCCccceeeeEEEc-CEEEEEccccCCCCCCCCceeecCCeeeeeec
Q 024009 226 LPYRVKTTLAGYWN-GWLYFTSGQRDKGPDDPAPRKVHGDMWRTKLL 271 (274)
Q Consensus 226 ~p~~~~~~~~~~~~-~~l~~~GG~~~~~~~~~~~~~~~~~~W~~~~~ 271 (274)
+|.+.........+ ..+++.|.. ..+......+ ....|+..-+
T Consensus 87 ipgpv~a~~~~~~d~~~~~~aG~~-~~g~~~l~~~--dGs~W~~i~~ 130 (281)
T PF12768_consen 87 IPGPVTALTFISNDGSNFWVAGRS-ANGSTFLMKY--DGSSWSSIGS 130 (281)
T ss_pred CCCcEEEEEeeccCCceEEEecee-cCCCceEEEE--cCCceEeccc
Confidence 45554333333334 456666655 4333333344 4788876443
No 59
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=95.10 E-value=1.4 Score=35.28 Aligned_cols=161 Identities=22% Similarity=0.252 Sum_probs=82.8
Q ss_pred eeEEEECCCCC--eeeCCCCCCCCCCce--EEEECCeEEEEcCCCCCCCCCCccceEeeeecCCCCCCceeeccCCCCCC
Q 024009 36 HTFVLDTETKK--WQDLPPLPVPRYAPA--TQLWRGRLHVMGGSGENRYTPEVDHWSLAVKDGKPLEKEWRTEIPIPRGG 111 (274)
Q Consensus 36 ~~~~~d~~~~~--W~~~~~~~~~r~~~~--~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~~ 111 (274)
.+..+|+.+++ |+.-. ........ .+..++.+|+..+. ..+.+++. +..+..|+...+ ...
T Consensus 4 ~l~~~d~~tG~~~W~~~~--~~~~~~~~~~~~~~~~~v~~~~~~------~~l~~~d~-----~tG~~~W~~~~~--~~~ 68 (238)
T PF13360_consen 4 TLSALDPRTGKELWSYDL--GPGIGGPVATAVPDGGRVYVASGD------GNLYALDA-----KTGKVLWRFDLP--GPI 68 (238)
T ss_dssp EEEEEETTTTEEEEEEEC--SSSCSSEEETEEEETTEEEEEETT------SEEEEEET-----TTSEEEEEEECS--SCG
T ss_pred EEEEEECCCCCEEEEEEC--CCCCCCccceEEEeCCEEEEEcCC------CEEEEEEC-----CCCCEEEEeecc--ccc
Confidence 45677776654 66622 11122222 33368888887421 22333331 134445766442 221
Q ss_pred CcceeEEeCCEEEEEccCCCCCCCCCCCCccccccCceeecCceEEeC-CC--CCeE-ecCCCCCCCccceeeEEEeCCE
Q 024009 112 PHRACVVVDDRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYDDVYMLD-DE--MKWK-VLPSMPKPDSHIEFAWVLVNNS 187 (274)
Q Consensus 112 ~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d-~~--~~W~-~~~~~~~~~~~~~~~~~~~~~~ 187 (274)
. ......++.||+.... ..++.+| .+ ..|+ .....+.............++.
T Consensus 69 ~-~~~~~~~~~v~v~~~~-----------------------~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~ 124 (238)
T PF13360_consen 69 S-GAPVVDGGRVYVGTSD-----------------------GSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDR 124 (238)
T ss_dssp G-SGEEEETTEEEEEETT-----------------------SEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTE
T ss_pred c-ceeeecccccccccce-----------------------eeeEecccCCcceeeeeccccccccccccccCceEecCE
Confidence 1 1247788888887631 2577787 43 4698 4544333222222344555777
Q ss_pred EEEEeccCCCCCCcccccccCceEEEEcCCCc--eEEeccCCCcc--------ceeeeEEEcCEEEEEccc
Q 024009 188 IVIVGGTTEKHPTTKKMVLVGEIFQFNLNTLK--WHVIGKLPYRV--------KTTLAGYWNGWLYFTSGQ 248 (274)
Q Consensus 188 l~v~GG~~~~~~~~~~~~~~~~i~~yd~~~~~--W~~~~~~p~~~--------~~~~~~~~~~~l~~~GG~ 248 (274)
+++... ...++++|+++.+ |+.-...+... ........++.+|+..+.
T Consensus 125 ~~~~~~-------------~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 182 (238)
T PF13360_consen 125 LYVGTS-------------SGKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVISDGRVYVSSGD 182 (238)
T ss_dssp EEEEET-------------CSEEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEECCTTEEEEECCT
T ss_pred EEEEec-------------cCcEEEEecCCCcEEEEeecCCCCCCcceeeecccccceEEECCEEEEEcCC
Confidence 776653 1279999998775 76533332211 123333346788887664
No 60
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=94.74 E-value=1.1 Score=39.09 Aligned_cols=148 Identities=18% Similarity=0.270 Sum_probs=82.2
Q ss_pred CCEEEEEcCcCCCCCCCCCCeeEEEECCCCCeeeCCCCCCCCCC-ceEEEE-CCe-EEEEcCCCCCCCCCCccceEeeee
Q 024009 16 GRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLPVPRYA-PATQLW-RGR-LHVMGGSGENRYTPEVDHWSLAVK 92 (274)
Q Consensus 16 ~~~iyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~~~~r~~-~~~~~~-~~~-iyv~GG~~~~~~~~~~~~~~~~~~ 92 (274)
.-.+.+.+|+++ .-.+|..|-+++. .+..+...++- .++.+. +|+ ..+++|... -+|
T Consensus 224 ~~plllvaG~d~------~lrifqvDGk~N~--~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrk------------y~y 283 (514)
T KOG2055|consen 224 TAPLLLVAGLDG------TLRIFQVDGKVNP--KLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRK------------YLY 283 (514)
T ss_pred CCceEEEecCCC------cEEEEEecCccCh--hheeeeeccCccceeeecCCCceEEEecccce------------EEE
Confidence 556888888754 3567888888776 55544433332 112222 554 666666431 134
Q ss_pred cCCCCCCceeeccCC---CCCCCcceeEEeCCEEEEEccCCCCCCCCCCCCccccccCceeecCceEEeC-CCCCeEecC
Q 024009 93 DGKPLEKEWRTEIPI---PRGGPHRACVVVDDRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYDDVYMLD-DEMKWKVLP 168 (274)
Q Consensus 93 ~~d~~~~~W~~~~~~---p~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d-~~~~W~~~~ 168 (274)
.||..+.+-.++.++ +......--+..++.+.++-|..+. ++.+. .++.|-.--
T Consensus 284 syDle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~----------------------I~lLhakT~eli~s~ 341 (514)
T KOG2055|consen 284 SYDLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGH----------------------IHLLHAKTKELITSF 341 (514)
T ss_pred EeeccccccccccCCCCcccchhheeEecCCCCeEEEcccCce----------------------EEeehhhhhhhhhee
Confidence 455677777766653 2111112234556667777776644 55555 566664433
Q ss_pred CCCCCCccceeeEEEeCCEEEEEeccCCCCCCcccccccCceEEEEcCCCce
Q 024009 169 SMPKPDSHIEFAWVLVNNSIVIVGGTTEKHPTTKKMVLVGEIFQFNLNTLKW 220 (274)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~i~~yd~~~~~W 220 (274)
.++..... .+....+.+|++.||+ ..||.+|+.+++-
T Consensus 342 KieG~v~~--~~fsSdsk~l~~~~~~-------------GeV~v~nl~~~~~ 378 (514)
T KOG2055|consen 342 KIEGVVSD--FTFSSDSKELLASGGT-------------GEVYVWNLRQNSC 378 (514)
T ss_pred eeccEEee--EEEecCCcEEEEEcCC-------------ceEEEEecCCcce
Confidence 33333333 3333444567777764 2699999998853
No 61
>cd00094 HX Hemopexin-like repeats.; Hemopexin is a heme-binding protein that transports heme to the liver. Hemopexin-like repeats occur in vitronectin and some matrix metalloproteinases family (matrixins). The HX repeats of some matrixins bind tissue inhibitor of metalloproteinases (TIMPs). This CD contains 4 instances of the repeat.
Probab=93.30 E-value=3.2 Score=32.48 Aligned_cols=48 Identities=25% Similarity=0.514 Sum_probs=29.2
Q ss_pred CCEEEEEeccCCCCCCcccccccCceEEEEcCCCceEE-----e----ccCCCccceeeeEEE-cCEEEEEccc
Q 024009 185 NNSIVIVGGTTEKHPTTKKMVLVGEIFQFNLNTLKWHV-----I----GKLPYRVKTTLAGYW-NGWLYFTSGQ 248 (274)
Q Consensus 185 ~~~l~v~GG~~~~~~~~~~~~~~~~i~~yd~~~~~W~~-----~----~~~p~~~~~~~~~~~-~~~l~~~GG~ 248 (274)
++++|++-|. ..++||..+++... + ..+|.. -.++... ++++|+|-|.
T Consensus 110 ~~~~yfFkg~--------------~y~ry~~~~~~v~~~yP~~i~~~w~g~p~~--idaa~~~~~~~~yfF~g~ 167 (194)
T cd00094 110 NGKTYFFKGD--------------KYWRYDEKTQKMDPGYPKLIETDFPGVPDK--VDAAFRWLDGYYYFFKGD 167 (194)
T ss_pred CCEEEEEeCC--------------EEEEEeCCCccccCCCCcchhhcCCCcCCC--cceeEEeCCCcEEEEECC
Confidence 6899999774 78899876665421 1 123322 2233334 4899999773
No 62
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=93.13 E-value=3.1 Score=36.54 Aligned_cols=84 Identities=15% Similarity=0.072 Sum_probs=52.5
Q ss_pred CceEEeC-CCCCeEecCCCCC-CCccceeeEEEeCCEEEEEeccCCCCCCcccccccCceEEEEcCCCceEEeccCCCcc
Q 024009 153 DDVYMLD-DEMKWKVLPSMPK-PDSHIEFAWVLVNNSIVIVGGTTEKHPTTKKMVLVGEIFQFNLNTLKWHVIGKLPYRV 230 (274)
Q Consensus 153 ~~~~~~d-~~~~W~~~~~~~~-~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~i~~yd~~~~~W~~~~~~p~~~ 230 (274)
.-+|.|| ++.+-+++.++-. ........-+..++.++++-|..+ .|+.+..+++.|-.--.++...
T Consensus 280 ky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G------------~I~lLhakT~eli~s~KieG~v 347 (514)
T KOG2055|consen 280 KYLYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNG------------HIHLLHAKTKELITSFKIEGVV 347 (514)
T ss_pred eEEEEeeccccccccccCCCCcccchhheeEecCCCCeEEEcccCc------------eEEeehhhhhhhhheeeeccEE
Confidence 3478888 8877777765421 111111233566677777777544 7888999999886655566555
Q ss_pred ceeeeEEEcCEEEEEccc
Q 024009 231 KTTLAGYWNGWLYFTSGQ 248 (274)
Q Consensus 231 ~~~~~~~~~~~l~~~GG~ 248 (274)
...+....+.+|++.||.
T Consensus 348 ~~~~fsSdsk~l~~~~~~ 365 (514)
T KOG2055|consen 348 SDFTFSSDSKELLASGGT 365 (514)
T ss_pred eeEEEecCCcEEEEEcCC
Confidence 555555445677777775
No 63
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=93.12 E-value=3.7 Score=33.24 Aligned_cols=48 Identities=29% Similarity=0.292 Sum_probs=28.1
Q ss_pred CCEEEEEcCcCCCCCCCCCCeeEEEECCCCCeeeCCCCCC---C--CCCceEEEECCeEEEEc
Q 024009 16 GRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLPV---P--RYAPATQLWRGRLHVMG 73 (274)
Q Consensus 16 ~~~iyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~~~---~--r~~~~~~~~~~~iyv~G 73 (274)
++.+|+... ....++|+.+++++.+...+. + +..-.++--+|+||+--
T Consensus 51 ~g~l~v~~~----------~~~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~ 103 (246)
T PF08450_consen 51 DGRLYVADS----------GGIAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTD 103 (246)
T ss_dssp TSEEEEEET----------TCEEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEE
T ss_pred CCEEEEEEc----------CceEEEecCCCcEEEEeeccCCCcccCCCceEEEcCCCCEEEEe
Confidence 677777743 334667999999988765421 2 22233333377888853
No 64
>PRK04792 tolB translocation protein TolB; Provisional
Probab=92.57 E-value=7.4 Score=34.84 Aligned_cols=145 Identities=15% Similarity=0.110 Sum_probs=70.6
Q ss_pred CeeEEEECCCCCeeeCCCCCCCCCCceEEEE-CC-eEEEEcCCCCCCCCCCccceEeeeecCCCCCCceeeccCCCCCCC
Q 024009 35 AHTFVLDTETKKWQDLPPLPVPRYAPATQLW-RG-RLHVMGGSGENRYTPEVDHWSLAVKDGKPLEKEWRTEIPIPRGGP 112 (274)
Q Consensus 35 ~~~~~~d~~~~~W~~~~~~~~~r~~~~~~~~-~~-~iyv~GG~~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~~~ 112 (274)
..+|++|+.+++-+.+...+..- ...+.. ++ .|++.....+ . ..+|.+|..+.+.+.+........
T Consensus 242 ~~L~~~dl~tg~~~~lt~~~g~~--~~~~wSPDG~~La~~~~~~g-----~-----~~Iy~~dl~tg~~~~lt~~~~~~~ 309 (448)
T PRK04792 242 AEIFVQDIYTQVREKVTSFPGIN--GAPRFSPDGKKLALVLSKDG-----Q-----PEIYVVDIATKALTRITRHRAIDT 309 (448)
T ss_pred cEEEEEECCCCCeEEecCCCCCc--CCeeECCCCCEEEEEEeCCC-----C-----eEEEEEECCCCCeEECccCCCCcc
Confidence 57899999888766665543211 122222 34 4555432221 1 123334456666665544322111
Q ss_pred cceeEEeCC-EEEEEccCCCCCCCCCCCCccccccCceeecCceEEeC-CCCCeEecCCCCCCCccceeeEEEeCCEEEE
Q 024009 113 HRACVVVDD-RLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYDDVYMLD-DEMKWKVLPSMPKPDSHIEFAWVLVNNSIVI 190 (274)
Q Consensus 113 ~~~~~~~~~-~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d-~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~v 190 (274)
.....-++ .|++...... ..++|.+| .+.+++.+.... ......+ ..-+++.++
T Consensus 310 -~p~wSpDG~~I~f~s~~~g--------------------~~~Iy~~dl~~g~~~~Lt~~g--~~~~~~~-~SpDG~~l~ 365 (448)
T PRK04792 310 -EPSWHPDGKSLIFTSERGG--------------------KPQIYRVNLASGKVSRLTFEG--EQNLGGS-ITPDGRSMI 365 (448)
T ss_pred -ceEECCCCCEEEEEECCCC--------------------CceEEEEECCCCCEEEEecCC--CCCcCee-ECCCCCEEE
Confidence 12223344 4555432221 14788888 677777764211 1111122 233444343
Q ss_pred EeccCCCCCCcccccccCceEEEEcCCCceEEec
Q 024009 191 VGGTTEKHPTTKKMVLVGEIFQFNLNTLKWHVIG 224 (274)
Q Consensus 191 ~GG~~~~~~~~~~~~~~~~i~~yd~~~~~W~~~~ 224 (274)
+....... ..++.+|+.+.+.+.+.
T Consensus 366 ~~~~~~g~---------~~I~~~dl~~g~~~~lt 390 (448)
T PRK04792 366 MVNRTNGK---------FNIARQDLETGAMQVLT 390 (448)
T ss_pred EEEecCCc---------eEEEEEECCCCCeEEcc
Confidence 43332211 27899999998877663
No 65
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=92.54 E-value=4.1 Score=34.55 Aligned_cols=110 Identities=16% Similarity=0.168 Sum_probs=62.7
Q ss_pred ceeeccCCCCCCCcceeEEeCCEEEEEccCCCCCCCCCCCCccccccCceeecCceEEeC-CCCC-eEecCCCCCCCccc
Q 024009 100 EWRTEIPIPRGGPHRACVVVDDRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYDDVYMLD-DEMK-WKVLPSMPKPDSHI 177 (274)
Q Consensus 100 ~W~~~~~~p~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d-~~~~-W~~~~~~~~~~~~~ 177 (274)
+.+.+........-.+++.++++|.+.-|. .++.|+ ...+ +.....+..+..-
T Consensus 78 ~l~~i~~~~~~g~V~ai~~~~~~lv~~~g~------------------------~l~v~~l~~~~~l~~~~~~~~~~~i- 132 (321)
T PF03178_consen 78 KLKLIHSTEVKGPVTAICSFNGRLVVAVGN------------------------KLYVYDLDNSKTLLKKAFYDSPFYI- 132 (321)
T ss_dssp EEEEEEEEEESS-EEEEEEETTEEEEEETT------------------------EEEEEEEETTSSEEEEEEE-BSSSE-
T ss_pred EEEEEEEEeecCcceEhhhhCCEEEEeecC------------------------EEEEEEccCcccchhhheecceEEE-
Confidence 445444433333335788889997766662 355555 4444 7777765554432
Q ss_pred eeeEEEeCCEEEEEeccCCCCCCcccccccCceEEEEcCCCceEEeccCCCccceeeeEEE-cCEEEEEcc
Q 024009 178 EFAWVLVNNSIVIVGGTTEKHPTTKKMVLVGEIFQFNLNTLKWHVIGKLPYRVKTTLAGYW-NGWLYFTSG 247 (274)
Q Consensus 178 ~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~i~~yd~~~~~W~~~~~~p~~~~~~~~~~~-~~~l~~~GG 247 (274)
.++...++.|++.--. ..- .++.|+.+..+-..++.-+.++...++..+ ++. .++++
T Consensus 133 -~sl~~~~~~I~vgD~~-~sv----------~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~-~~i~~ 190 (321)
T PF03178_consen 133 -TSLSVFKNYILVGDAM-KSV----------SLLRYDEENNKLILVARDYQPRWVTAAEFLVDED-TIIVG 190 (321)
T ss_dssp -EEEEEETTEEEEEESS-SSE----------EEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSS-EEEEE
T ss_pred -EEEeccccEEEEEEcc-cCE----------EEEEEEccCCEEEEEEecCCCccEEEEEEecCCc-EEEEE
Confidence 5567778866544322 211 567788877778888777777776666666 554 33433
No 66
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=92.40 E-value=7.1 Score=34.19 Aligned_cols=71 Identities=17% Similarity=0.273 Sum_probs=39.9
Q ss_pred ceEEeC-CC--CCeEecCCCCCCCccceeeEEEeCCEEEEEeccCCCCCCcccccccCceEEEEcCCCc--eEEeccCCC
Q 024009 154 DVYMLD-DE--MKWKVLPSMPKPDSHIEFAWVLVNNSIVIVGGTTEKHPTTKKMVLVGEIFQFNLNTLK--WHVIGKLPY 228 (274)
Q Consensus 154 ~~~~~d-~~--~~W~~~~~~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~i~~yd~~~~~--W~~~~~~p~ 228 (274)
.++++| .+ ..|+.-. ... ...+..+++||+... ...++++|+++.+ |+.- .+ .
T Consensus 267 ~l~ald~~tG~~~W~~~~--~~~-----~~~~~~~~~vy~~~~-------------~g~l~ald~~tG~~~W~~~-~~-~ 324 (394)
T PRK11138 267 NLVALDLRSGQIVWKREY--GSV-----NDFAVDGGRIYLVDQ-------------NDRVYALDTRGGVELWSQS-DL-L 324 (394)
T ss_pred eEEEEECCCCCEEEeecC--CCc-----cCcEEECCEEEEEcC-------------CCeEEEEECCCCcEEEccc-cc-C
Confidence 477777 43 4586532 111 123667899998752 1279999988764 7541 11 1
Q ss_pred ccceeeeEEEcCEEEEEc
Q 024009 229 RVKTTLAGYWNGWLYFTS 246 (274)
Q Consensus 229 ~~~~~~~~~~~~~l~~~G 246 (274)
.+...+.+..++.||+..
T Consensus 325 ~~~~~sp~v~~g~l~v~~ 342 (394)
T PRK11138 325 HRLLTAPVLYNGYLVVGD 342 (394)
T ss_pred CCcccCCEEECCEEEEEe
Confidence 122233344678887653
No 67
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=92.38 E-value=7.2 Score=34.23 Aligned_cols=60 Identities=13% Similarity=0.039 Sum_probs=32.8
Q ss_pred CceEEeC-CCCCeEecCCCCCCCccceeeEEEeCCEEEEEeccCCCCCCcccccccCceEEEEcCCCceEEec
Q 024009 153 DDVYMLD-DEMKWKVLPSMPKPDSHIEFAWVLVNNSIVIVGGTTEKHPTTKKMVLVGEIFQFNLNTLKWHVIG 224 (274)
Q Consensus 153 ~~~~~~d-~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~i~~yd~~~~~W~~~~ 224 (274)
..+|.+| .+.+++.+......... . ...-+++.+++....... ..++.+|+.+..++.+.
T Consensus 302 ~~iy~~d~~~~~~~~l~~~~~~~~~--~-~~spdg~~i~~~~~~~~~---------~~i~~~d~~~~~~~~l~ 362 (417)
T TIGR02800 302 PQIYMMDADGGEVRRLTFRGGYNAS--P-SWSPDGDLIAFVHREGGG---------FNIAVMDLDGGGERVLT 362 (417)
T ss_pred ceEEEEECCCCCEEEeecCCCCccC--e-EECCCCCEEEEEEccCCc---------eEEEEEeCCCCCeEEcc
Confidence 3688887 66666655432211111 1 233355555555443321 27999999887776654
No 68
>PF09910 DUF2139: Uncharacterized protein conserved in archaea (DUF2139); InterPro: IPR016675 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=92.32 E-value=5.9 Score=33.05 Aligned_cols=153 Identities=17% Similarity=0.139 Sum_probs=81.9
Q ss_pred CcCceeeEEeCCEEEEEcCcCC-------CCC-------CCCCCeeEEEECCCCC----eeeCCCCCCCCCCc-eEEE--
Q 024009 6 AHSHLGMVTDGRYIYVVTGQYG-------PQC-------RGPTAHTFVLDTETKK----WQDLPPLPVPRYAP-ATQL-- 64 (274)
Q Consensus 6 ~r~~~~~~~~~~~iyv~GG~~~-------~~~-------~~~~~~~~~~d~~~~~----W~~~~~~~~~r~~~-~~~~-- 64 (274)
+-.+.++.++++.|| ||||-- ... .+-.+.++.||.++++ |.+--.-+....+- +-..
T Consensus 36 GDTYNAV~~vDd~Iy-FGGWVHAPa~y~gk~~g~~~IdF~NKYSHVH~yd~e~~~VrLLWkesih~~~~WaGEVSdIlYd 114 (339)
T PF09910_consen 36 GDTYNAVEWVDDFIY-FGGWVHAPAVYEGKGDGRATIDFRNKYSHVHEYDTENDSVRLLWKESIHDKTKWAGEVSDILYD 114 (339)
T ss_pred CccceeeeeecceEE-EeeeecCCceeeeccCCceEEEEeeccceEEEEEcCCCeEEEEEecccCCccccccchhheeeC
Confidence 344566777777666 677721 000 1346789999999887 55543333222221 1112
Q ss_pred -ECCeEEEEcCCCCCCCCCCccceEeeeecCCCCCCceeeccCCCCCCCcceeEEeCCEEEEEccCCCCCCCCCCCCccc
Q 024009 65 -WRGRLHVMGGSGENRYTPEVDHWSLAVKDGKPLEKEWRTEIPIPRGGPHRACVVVDDRLLVIGGQEGDFMAKPGSPIFK 143 (274)
Q Consensus 65 -~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~ 143 (274)
++++|++.=+-. . . ++.+|+.|..+.+-+.+...|... ++...+..++-+ ..-.
T Consensus 115 P~~D~LLlAR~DG-h---~-----nLGvy~ldr~~g~~~~L~~~ps~K---G~~~~D~a~F~i--~~~~----------- 169 (339)
T PF09910_consen 115 PYEDRLLLARADG-H---A-----NLGVYSLDRRTGKAEKLSSNPSLK---GTLVHDYACFGI--NNFH----------- 169 (339)
T ss_pred CCcCEEEEEecCC-c---c-----eeeeEEEcccCCceeeccCCCCcC---ceEeeeeEEEec--cccc-----------
Confidence 377788764321 1 1 334555566777777777766664 344555444433 1111
Q ss_pred cccCceeecCceEEeC-CCCCe--EecCCC------CCCCccceeeEEEeCCEEEEE
Q 024009 144 CSRRNEVVYDDVYMLD-DEMKW--KVLPSM------PKPDSHIEFAWVLVNNSIVIV 191 (274)
Q Consensus 144 ~~~~~~~~~~~~~~~d-~~~~W--~~~~~~------~~~~~~~~~~~~~~~~~l~v~ 191 (274)
.-...+.++| .+.+| +..+.. +..+... -.++...+++|.+
T Consensus 170 ------~g~~~i~~~Dli~~~~~~e~f~~~~s~Dg~~~~~~~~-G~~~s~ynR~faF 219 (339)
T PF09910_consen 170 ------KGVSGIHCLDLISGKWVIESFDVSLSVDGGPVIRPEL-GAMASAYNRLFAF 219 (339)
T ss_pred ------cCCceEEEEEccCCeEEEEecccccCCCCCceEeecc-ccEEEEeeeEEEE
Confidence 0136789999 88999 333311 1112221 3457777887776
No 69
>cd00094 HX Hemopexin-like repeats.; Hemopexin is a heme-binding protein that transports heme to the liver. Hemopexin-like repeats occur in vitronectin and some matrix metalloproteinases family (matrixins). The HX repeats of some matrixins bind tissue inhibitor of metalloproteinases (TIMPs). This CD contains 4 instances of the repeat.
Probab=92.25 E-value=4.5 Score=31.60 Aligned_cols=26 Identities=12% Similarity=0.316 Sum_probs=19.0
Q ss_pred eEEEeCCEEEEEeccCCCCCCcccccccCceEEEEcCCCc
Q 024009 180 AWVLVNNSIVIVGGTTEKHPTTKKMVLVGEIFQFNLNTLK 219 (274)
Q Consensus 180 ~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~i~~yd~~~~~ 219 (274)
++...++++|++-|. ..++||..+.+
T Consensus 153 a~~~~~~~~yfF~g~--------------~y~~~d~~~~~ 178 (194)
T cd00094 153 AFRWLDGYYYFFKGD--------------QYWRFDPRSKE 178 (194)
T ss_pred eEEeCCCcEEEEECC--------------EEEEEeCccce
Confidence 333444889999764 89999988775
No 70
>PRK00178 tolB translocation protein TolB; Provisional
Probab=91.72 E-value=9 Score=33.93 Aligned_cols=145 Identities=10% Similarity=0.094 Sum_probs=69.9
Q ss_pred CeeEEEECCCCCeeeCCCCCCCCCCceEEEE-CC-eEEEEcCCCCCCCCCCccceEeeeecCCCCCCceeeccCCCCCCC
Q 024009 35 AHTFVLDTETKKWQDLPPLPVPRYAPATQLW-RG-RLHVMGGSGENRYTPEVDHWSLAVKDGKPLEKEWRTEIPIPRGGP 112 (274)
Q Consensus 35 ~~~~~~d~~~~~W~~~~~~~~~r~~~~~~~~-~~-~iyv~GG~~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~~~ 112 (274)
..++++|+.+++-+.+...+.. ....... ++ +|++..... .. ..+|.+|..+.+.+.+...+....
T Consensus 223 ~~l~~~~l~~g~~~~l~~~~g~--~~~~~~SpDG~~la~~~~~~-----g~-----~~Iy~~d~~~~~~~~lt~~~~~~~ 290 (430)
T PRK00178 223 PRIFVQNLDTGRREQITNFEGL--NGAPAWSPDGSKLAFVLSKD-----GN-----PEIYVMDLASRQLSRVTNHPAIDT 290 (430)
T ss_pred CEEEEEECCCCCEEEccCCCCC--cCCeEECCCCCEEEEEEccC-----CC-----ceEEEEECCCCCeEEcccCCCCcC
Confidence 5789999988887776543321 1122222 44 444332111 11 123334466666666544332221
Q ss_pred cceeEEeCC-EEEEEccCCCCCCCCCCCCccccccCceeecCceEEeC-CCCCeEecCCCCCCCccceeeEEEeC-CEEE
Q 024009 113 HRACVVVDD-RLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYDDVYMLD-DEMKWKVLPSMPKPDSHIEFAWVLVN-NSIV 189 (274)
Q Consensus 113 ~~~~~~~~~-~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d-~~~~W~~~~~~~~~~~~~~~~~~~~~-~~l~ 189 (274)
. ....-++ +|++.....+ ...+|.++ .+.+++.+.... ....... ..-+ +.|+
T Consensus 291 ~-~~~spDg~~i~f~s~~~g--------------------~~~iy~~d~~~g~~~~lt~~~--~~~~~~~-~Spdg~~i~ 346 (430)
T PRK00178 291 E-PFWGKDGRTLYFTSDRGG--------------------KPQIYKVNVNGGRAERVTFVG--NYNARPR-LSADGKTLV 346 (430)
T ss_pred C-eEECCCCCEEEEEECCCC--------------------CceEEEEECCCCCEEEeecCC--CCccceE-ECCCCCEEE
Confidence 1 2222344 4555432221 13688887 666676654221 1111111 2234 4444
Q ss_pred EEeccCCCCCCcccccccCceEEEEcCCCceEEecc
Q 024009 190 IVGGTTEKHPTTKKMVLVGEIFQFNLNTLKWHVIGK 225 (274)
Q Consensus 190 v~GG~~~~~~~~~~~~~~~~i~~yd~~~~~W~~~~~ 225 (274)
+.. ..... ..++.+|+.+.+.+.+..
T Consensus 347 ~~~-~~~~~---------~~l~~~dl~tg~~~~lt~ 372 (430)
T PRK00178 347 MVH-RQDGN---------FHVAAQDLQRGSVRILTD 372 (430)
T ss_pred EEE-ccCCc---------eEEEEEECCCCCEEEccC
Confidence 443 22211 169999999988877743
No 71
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=91.64 E-value=2.4 Score=34.77 Aligned_cols=160 Identities=20% Similarity=0.205 Sum_probs=90.0
Q ss_pred cCceeeEE-eCCEEEEEcCcCCCCCCCCCCeeEEEECCCCCeeeCCCCCCCCCCceEEEECCeEEEEcCCCCCCCCCCcc
Q 024009 7 HSHLGMVT-DGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLPVPRYAPATQLWRGRLHVMGGSGENRYTPEVD 85 (274)
Q Consensus 7 r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~ 85 (274)
-+..+... .++.+|.--|.++ .+.+.++|+.+++-....++|..-++-.++.++++||..-=+. ...-
T Consensus 45 aFTQGL~~~~~g~LyESTG~yG------~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~d~l~qLTWk~-----~~~f 113 (264)
T PF05096_consen 45 AFTQGLEFLDDGTLYESTGLYG------QSSLRKVDLETGKVLQSVPLPPRYFGEGITILGDKLYQLTWKE-----GTGF 113 (264)
T ss_dssp -EEEEEEEEETTEEEEEECSTT------EEEEEEEETTTSSEEEEEE-TTT--EEEEEEETTEEEEEESSS-----SEEE
T ss_pred ccCccEEecCCCEEEEeCCCCC------cEEEEEEECCCCcEEEEEECCccccceeEEEECCEEEEEEecC-----CeEE
Confidence 34455555 5788999888765 3788999999999887788888888889999999999985322 1122
Q ss_pred ceEeeeecCCCCCCceeeccCCCCCCCcceeEEeCCEEEEEccCCCCCCCCCCCCccccccCceeecCceEEeC-CCCCe
Q 024009 86 HWSLAVKDGKPLEKEWRTEIPIPRGGPHRACVVVDDRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYDDVYMLD-DEMKW 164 (274)
Q Consensus 86 ~~~~~~~~~d~~~~~W~~~~~~p~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d-~~~~W 164 (274)
+|+ + ++.+.+...+-...+=+++..+..|++.-|. +.++.+| .+.+-
T Consensus 114 ~yd-------~--~tl~~~~~~~y~~EGWGLt~dg~~Li~SDGS-----------------------~~L~~~dP~~f~~ 161 (264)
T PF05096_consen 114 VYD-------P--NTLKKIGTFPYPGEGWGLTSDGKRLIMSDGS-----------------------SRLYFLDPETFKE 161 (264)
T ss_dssp EEE-------T--TTTEEEEEEE-SSS--EEEECSSCEEEE-SS-----------------------SEEEEE-TTT-SE
T ss_pred EEc-------c--ccceEEEEEecCCcceEEEcCCCEEEEECCc-----------------------cceEEECCcccce
Confidence 232 2 2334444433334445778777788888772 4677776 43322
Q ss_pred Ee---cCCCCCCCccceeeEEEeCCEEEEEeccCCCCCCcccccccCceEEEEcCCCceEE
Q 024009 165 KV---LPSMPKPDSHIEFAWVLVNNSIVIVGGTTEKHPTTKKMVLVGEIFQFNLNTLKWHV 222 (274)
Q Consensus 165 ~~---~~~~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~i~~yd~~~~~W~~ 222 (274)
.. +.....+.... --+-..++.||.-=- ..+.|.+-||++.+-..
T Consensus 162 ~~~i~V~~~g~pv~~L-NELE~i~G~IyANVW------------~td~I~~Idp~tG~V~~ 209 (264)
T PF05096_consen 162 VRTIQVTDNGRPVSNL-NELEYINGKIYANVW------------QTDRIVRIDPETGKVVG 209 (264)
T ss_dssp EEEEE-EETTEE---E-EEEEEETTEEEEEET------------TSSEEEEEETTT-BEEE
T ss_pred EEEEEEEECCEECCCc-EeEEEEcCEEEEEeC------------CCCeEEEEeCCCCeEEE
Confidence 11 11111111110 112334666655322 24589999999998554
No 72
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=91.55 E-value=2.9 Score=34.32 Aligned_cols=96 Identities=17% Similarity=0.133 Sum_probs=67.0
Q ss_pred eCCEEEEEccCCCCCCCCCCCCccccccCceeecCceEEeC-CCCCeEecCCCCCCCccceeeEEEeCCEEEEEeccCCC
Q 024009 119 VDDRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYDDVYMLD-DEMKWKVLPSMPKPDSHIEFAWVLVNNSIVIVGGTTEK 197 (274)
Q Consensus 119 ~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d-~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~v~GG~~~~ 197 (274)
.++.+|.--|..+. ..+..+| .+++-....++|.... +=+++..+++||.+.-.++
T Consensus 54 ~~g~LyESTG~yG~--------------------S~l~~~d~~tg~~~~~~~l~~~~F--gEGit~~~d~l~qLTWk~~- 110 (264)
T PF05096_consen 54 DDGTLYESTGLYGQ--------------------SSLRKVDLETGKVLQSVPLPPRYF--GEGITILGDKLYQLTWKEG- 110 (264)
T ss_dssp ETTEEEEEECSTTE--------------------EEEEEEETTTSSEEEEEE-TTT----EEEEEEETTEEEEEESSSS-
T ss_pred CCCEEEEeCCCCCc--------------------EEEEEEECCCCcEEEEEECCcccc--ceeEEEECCEEEEEEecCC-
Confidence 67899999887765 4567777 7777665566666443 3567899999999976533
Q ss_pred CCCcccccccCceEEEEcCCCceEEeccCCCccceeeeEEEcCEEEEEccccC
Q 024009 198 HPTTKKMVLVGEIFQFNLNTLKWHVIGKLPYRVKTTLAGYWNGWLYFTSGQRD 250 (274)
Q Consensus 198 ~~~~~~~~~~~~i~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~l~~~GG~~~ 250 (274)
..++||+++ .+.+...+.+..+-+++.-++.|++.-|...
T Consensus 111 -----------~~f~yd~~t--l~~~~~~~y~~EGWGLt~dg~~Li~SDGS~~ 150 (264)
T PF05096_consen 111 -----------TGFVYDPNT--LKKIGTFPYPGEGWGLTSDGKRLIMSDGSSR 150 (264)
T ss_dssp -----------EEEEEETTT--TEEEEEEE-SSS--EEEECSSCEEEE-SSSE
T ss_pred -----------eEEEEcccc--ceEEEEEecCCcceEEEcCCCEEEEECCccc
Confidence 789999875 6777777777778888877888888887544
No 73
>PRK04922 tolB translocation protein TolB; Provisional
Probab=90.22 E-value=13 Score=33.10 Aligned_cols=60 Identities=13% Similarity=0.075 Sum_probs=31.9
Q ss_pred CceEEeC-CCCCeEecCCCCCCCccceeeEEEeCCEEEEEeccCCCCCCcccccccCceEEEEcCCCceEEec
Q 024009 153 DDVYMLD-DEMKWKVLPSMPKPDSHIEFAWVLVNNSIVIVGGTTEKHPTTKKMVLVGEIFQFNLNTLKWHVIG 224 (274)
Q Consensus 153 ~~~~~~d-~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~i~~yd~~~~~W~~~~ 224 (274)
.++|.+| .+.+.+.+.... ......+...-++.|++..+. ... ..++.+|+.+.+.+.+.
T Consensus 316 ~~iy~~dl~~g~~~~lt~~g--~~~~~~~~SpDG~~Ia~~~~~-~~~---------~~I~v~d~~~g~~~~Lt 376 (433)
T PRK04922 316 PQIYRVAASGGSAERLTFQG--NYNARASVSPDGKKIAMVHGS-GGQ---------YRIAVMDLSTGSVRTLT 376 (433)
T ss_pred ceEEEEECCCCCeEEeecCC--CCccCEEECCCCCEEEEEECC-CCc---------eeEEEEECCCCCeEECC
Confidence 3688887 666666654221 111112222223455544332 111 17999999888887664
No 74
>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium []. Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding
Probab=89.80 E-value=8.6 Score=31.48 Aligned_cols=161 Identities=14% Similarity=0.071 Sum_probs=85.4
Q ss_pred CCeEEEEcCCCCCCCCCCccceEeeeecCCCCCCceeeccCCCCCCCcceeEEeCCEEEEEccCCCCCCCCCCCCccccc
Q 024009 66 RGRLHVMGGSGENRYTPEVDHWSLAVKDGKPLEKEWRTEIPIPRGGPHRACVVVDDRLLVIGGQEGDFMAKPGSPIFKCS 145 (274)
Q Consensus 66 ~~~iyv~GG~~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~ 145 (274)
.+++|++.+.... .+..|.. ..++ ....+....-.+|.+..+.+.++++|.+|.--..
T Consensus 30 ~~~iy~~~~~~~~----~v~ey~~-~~~f-~~~~~~~~~~~Lp~~~~GtG~vVYngslYY~~~~---------------- 87 (250)
T PF02191_consen 30 SEKIYVTSGFSGN----TVYEYRN-YEDF-LRNGRSSRTYKLPYPWQGTGHVVYNGSLYYNKYN---------------- 87 (250)
T ss_pred CCCEEEECccCCC----EEEEEcC-HhHH-hhcCCCceEEEEeceeccCCeEEECCcEEEEecC----------------
Confidence 4578888775432 2222221 1111 0233444445577777778889999998886442
Q ss_pred cCceeecCceEEeC-CCCC---eEecCCCCC-------CCccceeeEEEeCCEEEEEeccCCCCCCcccccccCceEEEE
Q 024009 146 RRNEVVYDDVYMLD-DEMK---WKVLPSMPK-------PDSHIEFAWVLVNNSIVIVGGTTEKHPTTKKMVLVGEIFQFN 214 (274)
Q Consensus 146 ~~~~~~~~~~~~~d-~~~~---W~~~~~~~~-------~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~i~~yd 214 (274)
+..+..|| .+.+ +..++.... .......-.++-++-|+++=....... .-.+-+.|
T Consensus 88 ------s~~IvkydL~t~~v~~~~~L~~A~~~n~~~y~~~~~t~iD~AvDE~GLWvIYat~~~~g-------~ivvskld 154 (250)
T PF02191_consen 88 ------SRNIVKYDLTTRSVVARRELPGAGYNNRFPYYWSGYTDIDFAVDENGLWVIYATEDNNG-------NIVVSKLD 154 (250)
T ss_pred ------CceEEEEECcCCcEEEEEECCccccccccceecCCCceEEEEEcCCCEEEEEecCCCCC-------cEEEEeeC
Confidence 35788888 4443 445542211 011111334556677888755444332 11566677
Q ss_pred cCCCceEEe--ccCCCccceeeeEEEcCEEEEEccccCCCCCCCCceeec
Q 024009 215 LNTLKWHVI--GKLPYRVKTTLAGYWNGWLYFTSGQRDKGPDDPAPRKVH 262 (274)
Q Consensus 215 ~~~~~W~~~--~~~p~~~~~~~~~~~~~~l~~~GG~~~~~~~~~~~~~~~ 262 (274)
+++-+-++. ...+... ...+..+-|.||++-........-..+||+.
T Consensus 155 ~~tL~v~~tw~T~~~k~~-~~naFmvCGvLY~~~s~~~~~~~I~yafDt~ 203 (250)
T PF02191_consen 155 PETLSVEQTWNTSYPKRS-AGNAFMVCGVLYATDSYDTRDTEIFYAFDTY 203 (250)
T ss_pred cccCceEEEEEeccCchh-hcceeeEeeEEEEEEECCCCCcEEEEEEECC
Confidence 765543332 2333332 3345556789999977665443333455543
No 75
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=89.78 E-value=13 Score=32.31 Aligned_cols=151 Identities=19% Similarity=0.227 Sum_probs=76.7
Q ss_pred eeeEEeCCEEEEEcCcCCCCCCCCCCeeEEEECCCCC--eeeCCCCCCCCCCceEEEECCeEEEEcCCCCCCCCCCccce
Q 024009 10 LGMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTETKK--WQDLPPLPVPRYAPATQLWRGRLHVMGGSGENRYTPEVDHW 87 (274)
Q Consensus 10 ~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~d~~~~~--W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~ 87 (274)
.+.++.++++|+... ...++.+|+.+++ |+.--+-. ...+.+..++.+|+... + ..+..+
T Consensus 59 ~~p~v~~~~v~v~~~---------~g~v~a~d~~tG~~~W~~~~~~~---~~~~p~v~~~~v~v~~~-~-----g~l~al 120 (377)
T TIGR03300 59 LQPAVAGGKVYAADA---------DGTVVALDAETGKRLWRVDLDER---LSGGVGADGGLVFVGTE-K-----GEVIAL 120 (377)
T ss_pred cceEEECCEEEEECC---------CCeEEEEEccCCcEeeeecCCCC---cccceEEcCCEEEEEcC-C-----CEEEEE
Confidence 345667888887743 1468999988765 87543221 22233444677776432 1 222333
Q ss_pred EeeeecCCCCCCceeeccCCCCCCCcceeEEeCCEEEEEccCCCCCCCCCCCCccccccCceeecCceEEeC-C--CCCe
Q 024009 88 SLAVKDGKPLEKEWRTEIPIPRGGPHRACVVVDDRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYDDVYMLD-D--EMKW 164 (274)
Q Consensus 88 ~~~~~~~d~~~~~W~~~~~~p~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d-~--~~~W 164 (274)
+. +..+..|+....-. . ....+..++.+|+..+. ..++.+| . +..|
T Consensus 121 d~-----~tG~~~W~~~~~~~--~-~~~p~v~~~~v~v~~~~-----------------------g~l~a~d~~tG~~~W 169 (377)
T TIGR03300 121 DA-----EDGKELWRAKLSSE--V-LSPPLVANGLVVVRTND-----------------------GRLTALDAATGERLW 169 (377)
T ss_pred EC-----CCCcEeeeeccCce--e-ecCCEEECCEEEEECCC-----------------------CeEEEEEcCCCceee
Confidence 31 12344576533211 1 12334567777775431 3477777 3 3458
Q ss_pred EecCCCCCCCccceeeEEEeCCEEEEEeccCCCCCCcccccccCceEEEEcCCC--ceEE
Q 024009 165 KVLPSMPKPDSHIEFAWVLVNNSIVIVGGTTEKHPTTKKMVLVGEIFQFNLNTL--KWHV 222 (274)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~i~~yd~~~~--~W~~ 222 (274)
+.-...+........+.+..++.+|+ +.. ...++.+|+.+. .|+.
T Consensus 170 ~~~~~~~~~~~~~~~sp~~~~~~v~~-~~~------------~g~v~ald~~tG~~~W~~ 216 (377)
T TIGR03300 170 TYSRVTPALTLRGSASPVIADGGVLV-GFA------------GGKLVALDLQTGQPLWEQ 216 (377)
T ss_pred EEccCCCceeecCCCCCEEECCEEEE-ECC------------CCEEEEEEccCCCEeeee
Confidence 75443322110001223455665543 321 126889998776 4764
No 76
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=88.65 E-value=15 Score=31.78 Aligned_cols=156 Identities=17% Similarity=0.133 Sum_probs=77.6
Q ss_pred CeeEEEECCCCC--eeeCCCCCCC--------CCCceEEEECCeEEEEcCCCCCCCCCCccceEeeeecCCCCCCceeec
Q 024009 35 AHTFVLDTETKK--WQDLPPLPVP--------RYAPATQLWRGRLHVMGGSGENRYTPEVDHWSLAVKDGKPLEKEWRTE 104 (274)
Q Consensus 35 ~~~~~~d~~~~~--W~~~~~~~~~--------r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~d~~~~~W~~~ 104 (274)
..+..+|+.+++ |+.-...+.. ....+.+..++.+|+.... ..+.+++. ...+..|+..
T Consensus 200 g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~------g~l~a~d~-----~tG~~~W~~~ 268 (377)
T TIGR03300 200 GKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQ------GRVAALDL-----RSGRVLWKRD 268 (377)
T ss_pred CEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcC------CEEEEEEC-----CCCcEEEeec
Confidence 367889988764 7653221211 1123334457788885421 12333331 1234457653
Q ss_pred cCCCCCCCcceeEEeCCEEEEEccCCCCCCCCCCCCccccccCceeecCceEEeC-CC--CCeEecCCCCCCCccceeeE
Q 024009 105 IPIPRGGPHRACVVVDDRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYDDVYMLD-DE--MKWKVLPSMPKPDSHIEFAW 181 (274)
Q Consensus 105 ~~~p~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d-~~--~~W~~~~~~~~~~~~~~~~~ 181 (274)
. .. ....+..++.||+.... ..++.+| .+ ..|+.-. +... .. .+.
T Consensus 269 ~--~~---~~~p~~~~~~vyv~~~~-----------------------G~l~~~d~~tG~~~W~~~~-~~~~-~~--ssp 316 (377)
T TIGR03300 269 A--SS---YQGPAVDDNRLYVTDAD-----------------------GVVVALDRRSGSELWKNDE-LKYR-QL--TAP 316 (377)
T ss_pred c--CC---ccCceEeCCEEEEECCC-----------------------CeEEEEECCCCcEEEcccc-ccCC-cc--ccC
Confidence 1 11 12345678888887531 3577776 33 3576522 1111 11 223
Q ss_pred EEeCCEEEEEeccCCCCCCcccccccCceEEEEcCCCceEEeccCCCccceeeeEEEcCEEEEEc
Q 024009 182 VLVNNSIVIVGGTTEKHPTTKKMVLVGEIFQFNLNTLKWHVIGKLPYRVKTTLAGYWNGWLYFTS 246 (274)
Q Consensus 182 ~~~~~~l~v~GG~~~~~~~~~~~~~~~~i~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~l~~~G 246 (274)
+..++.||+.. . ...++++|+.+.+-..--+++........+..+++||+.+
T Consensus 317 ~i~g~~l~~~~-~------------~G~l~~~d~~tG~~~~~~~~~~~~~~~sp~~~~~~l~v~~ 368 (377)
T TIGR03300 317 AVVGGYLVVGD-F------------EGYLHWLSREDGSFVARLKTDGSGIASPPVVVGDGLLVQT 368 (377)
T ss_pred EEECCEEEEEe-C------------CCEEEEEECCCCCEEEEEEcCCCccccCCEEECCEEEEEe
Confidence 45677777653 1 1268899987775322112222222333455677877554
No 77
>PF09910 DUF2139: Uncharacterized protein conserved in archaea (DUF2139); InterPro: IPR016675 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=87.79 E-value=15 Score=30.73 Aligned_cols=163 Identities=18% Similarity=0.181 Sum_probs=84.0
Q ss_pred eeCCCCCCCC-CCceEEEE-CCeEEEEcCCCCC-------C----CCCCccceEeeeecCCCCCCc----eeeccCCCCC
Q 024009 48 QDLPPLPVPR-YAPATQLW-RGRLHVMGGSGEN-------R----YTPEVDHWSLAVKDGKPLEKE----WRTEIPIPRG 110 (274)
Q Consensus 48 ~~~~~~~~~r-~~~~~~~~-~~~iyv~GG~~~~-------~----~~~~~~~~~~~~~~~d~~~~~----W~~~~~~p~~ 110 (274)
+.+.+.|..= ..+.++.+ ++.| .|||.-.. . ...-.++|+ .+-.||..+.+ |+..-..+.-
T Consensus 26 elvG~~P~SGGDTYNAV~~vDd~I-yFGGWVHAPa~y~gk~~g~~~IdF~NKYS-HVH~yd~e~~~VrLLWkesih~~~~ 103 (339)
T PF09910_consen 26 ELVGPPPTSGGDTYNAVEWVDDFI-YFGGWVHAPAVYEGKGDGRATIDFRNKYS-HVHEYDTENDSVRLLWKESIHDKTK 103 (339)
T ss_pred eeccCCCCCCCccceeeeeecceE-EEeeeecCCceeeeccCCceEEEEeeccc-eEEEEEcCCCeEEEEEecccCCccc
Confidence 4566655442 34555555 5555 46774210 0 011122333 34455555554 6664444444
Q ss_pred CCccee-E---EeCCEEEEEccCCCCCCCCCCCCccccccCceeecCceEEeC-CCCCeEecCCCCCCCccceeeEEEeC
Q 024009 111 GPHRAC-V---VVDDRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYDDVYMLD-DEMKWKVLPSMPKPDSHIEFAWVLVN 185 (274)
Q Consensus 111 ~~~~~~-~---~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d-~~~~W~~~~~~~~~~~~~~~~~~~~~ 185 (274)
.++-.+ . .++++|++.-+.... .--+|..| .+..-+.+..-|.... +...+
T Consensus 104 WaGEVSdIlYdP~~D~LLlAR~DGh~-------------------nLGvy~ldr~~g~~~~L~~~ps~KG-----~~~~D 159 (339)
T PF09910_consen 104 WAGEVSDILYDPYEDRLLLARADGHA-------------------NLGVYSLDRRTGKAEKLSSNPSLKG-----TLVHD 159 (339)
T ss_pred cccchhheeeCCCcCEEEEEecCCcc-------------------eeeeEEEcccCCceeeccCCCCcCc-----eEeee
Confidence 333222 1 246788887654322 13577777 7777777766665532 13333
Q ss_pred CEEEEEeccCCCCCCcccccccCceEEEEcCCCce--EEec------cCC-CccceeeeEEEcCEEEEE
Q 024009 186 NSIVIVGGTTEKHPTTKKMVLVGEIFQFNLNTLKW--HVIG------KLP-YRVKTTLAGYWNGWLYFT 245 (274)
Q Consensus 186 ~~l~v~GG~~~~~~~~~~~~~~~~i~~yd~~~~~W--~~~~------~~p-~~~~~~~~~~~~~~l~~~ 245 (274)
...|-+ ...... ++.|.+||+.+++| +... .-+ ..+....+++..++++.|
T Consensus 160 ~a~F~i--~~~~~g-------~~~i~~~Dli~~~~~~e~f~~~~s~Dg~~~~~~~~G~~~s~ynR~faF 219 (339)
T PF09910_consen 160 YACFGI--NNFHKG-------VSGIHCLDLISGKWVIESFDVSLSVDGGPVIRPELGAMASAYNRLFAF 219 (339)
T ss_pred eEEEec--cccccC-------CceEEEEEccCCeEEEEecccccCCCCCceEeeccccEEEEeeeEEEE
Confidence 333322 222221 55899999999999 3321 112 223356667777888866
No 78
>PRK05137 tolB translocation protein TolB; Provisional
Probab=87.40 E-value=20 Score=31.82 Aligned_cols=20 Identities=25% Similarity=0.446 Sum_probs=15.8
Q ss_pred CeeEEEECCCCCeeeCCCCC
Q 024009 35 AHTFVLDTETKKWQDLPPLP 54 (274)
Q Consensus 35 ~~~~~~d~~~~~W~~~~~~~ 54 (274)
..++++|+.+++...+...+
T Consensus 226 ~~i~~~dl~~g~~~~l~~~~ 245 (435)
T PRK05137 226 PRVYLLDLETGQRELVGNFP 245 (435)
T ss_pred CEEEEEECCCCcEEEeecCC
Confidence 67899999998887776544
No 79
>PRK05137 tolB translocation protein TolB; Provisional
Probab=85.78 E-value=25 Score=31.26 Aligned_cols=60 Identities=15% Similarity=0.196 Sum_probs=31.7
Q ss_pred CceEEeC-CCCCeEecCCCCCCCccceeeEEEeCCEEEEEeccCCCCCCcccccccCceEEEEcCCCceEEec
Q 024009 153 DDVYMLD-DEMKWKVLPSMPKPDSHIEFAWVLVNNSIVIVGGTTEKHPTTKKMVLVGEIFQFNLNTLKWHVIG 224 (274)
Q Consensus 153 ~~~~~~d-~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~i~~yd~~~~~W~~~~ 224 (274)
.++|.+| .+..-+.+...+..... .. ..-+++-+++...... ...+|.+|+.+.+.+++.
T Consensus 270 ~~Iy~~d~~~~~~~~Lt~~~~~~~~--~~-~spDG~~i~f~s~~~g---------~~~Iy~~d~~g~~~~~lt 330 (435)
T PRK05137 270 TDIYTMDLRSGTTTRLTDSPAIDTS--PS-YSPDGSQIVFESDRSG---------SPQLYVMNADGSNPRRIS 330 (435)
T ss_pred ceEEEEECCCCceEEccCCCCccCc--ee-EcCCCCEEEEEECCCC---------CCeEEEEECCCCCeEEee
Confidence 4788888 66666666543322111 22 2234443333321111 127899998887777663
No 80
>PF08268 FBA_3: F-box associated domain; InterPro: IPR013187 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=85.32 E-value=10 Score=27.30 Aligned_cols=84 Identities=12% Similarity=0.237 Sum_probs=55.0
Q ss_pred EEeCCEEEEEcCcCCCCCCCCCCeeEEEECCCCCeeeCCC---CCCCCCCceEEEECCeEEEEcCCCCCCCCCCccceEe
Q 024009 13 VTDGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPP---LPVPRYAPATQLWRGRLHVMGGSGENRYTPEVDHWSL 89 (274)
Q Consensus 13 ~~~~~~iyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~---~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~ 89 (274)
+.++|.+|-+.-... .....+-.||..+.+|+.+.. .........++.++|+|.++.-..... ...++.|-+
T Consensus 2 icinGvly~~a~~~~----~~~~~IvsFDv~~E~f~~i~~P~~~~~~~~~~~L~~~~G~L~~v~~~~~~~-~~~~~iWvL 76 (129)
T PF08268_consen 2 ICINGVLYWLAWSED----SDNNVIVSFDVRSEKFRFIKLPEDPYSSDCSSTLIEYKGKLALVSYNDQGE-PDSIDIWVL 76 (129)
T ss_pred EEECcEEEeEEEECC----CCCcEEEEEEcCCceEEEEEeeeeeccccCccEEEEeCCeEEEEEecCCCC-cceEEEEEe
Confidence 346777877765411 235788999999999988854 234466788888899998876433221 234566654
Q ss_pred eeecCCCCCCceeecc
Q 024009 90 AVKDGKPLEKEWRTEI 105 (274)
Q Consensus 90 ~~~~~d~~~~~W~~~~ 105 (274)
+ |..+.+|.+..
T Consensus 77 e----D~~k~~Wsk~~ 88 (129)
T PF08268_consen 77 E----DYEKQEWSKKH 88 (129)
T ss_pred e----ccccceEEEEE
Confidence 3 34568898753
No 81
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=85.29 E-value=19 Score=30.86 Aligned_cols=151 Identities=14% Similarity=0.183 Sum_probs=69.4
Q ss_pred CCeeEEEECCCCC--eeeCCC--CCCCCCCceEEEE--CCeEEEEcCCCCCCCCCCccceEeeeecCCCCCCceee---c
Q 024009 34 TAHTFVLDTETKK--WQDLPP--LPVPRYAPATQLW--RGRLHVMGGSGENRYTPEVDHWSLAVKDGKPLEKEWRT---E 104 (274)
Q Consensus 34 ~~~~~~~d~~~~~--W~~~~~--~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~~~~~~d~~~~~W~~---~ 104 (274)
...+++|+..... ...... +|..-.-..+++. +..+||..-.. ..+.+|+. +..+.+++. +
T Consensus 165 ~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s-----~~v~v~~~-----~~~~g~~~~~~~~ 234 (345)
T PF10282_consen 165 ADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELS-----NTVSVFDY-----DPSDGSLTEIQTI 234 (345)
T ss_dssp TTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTT-----TEEEEEEE-----ETTTTEEEEEEEE
T ss_pred CCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCC-----CcEEEEee-----cccCCceeEEEEe
Confidence 3678888887665 655332 2332333344444 34788886432 44555543 233444443 3
Q ss_pred cCCCCCC----CcceeEEe-CC-EEEEEccCCCCCCCCCCCCccccccCceeecCceEEeC-CCCCeEecCCCCC-CCcc
Q 024009 105 IPIPRGG----PHRACVVV-DD-RLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYDDVYMLD-DEMKWKVLPSMPK-PDSH 176 (274)
Q Consensus 105 ~~~p~~~----~~~~~~~~-~~-~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d-~~~~W~~~~~~~~-~~~~ 176 (274)
+.+|... ..+.+... ++ .||+.....+. ..+|..| .+.+.+.+...+. +..-
T Consensus 235 ~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~s--------------------I~vf~~d~~~g~l~~~~~~~~~G~~P 294 (345)
T PF10282_consen 235 STLPEGFTGENAPAEIAISPDGRFLYVSNRGSNS--------------------ISVFDLDPATGTLTLVQTVPTGGKFP 294 (345)
T ss_dssp ESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTE--------------------EEEEEECTTTTTEEEEEEEEESSSSE
T ss_pred eeccccccccCCceeEEEecCCCEEEEEeccCCE--------------------EEEEEEecCCCceEEEEEEeCCCCCc
Confidence 4443321 12223333 34 47776433211 2455554 4555555543332 1111
Q ss_pred ceeeEEEeCCEEEEEeccCCCCCCcccccccCceEEEEcCCCceEEec
Q 024009 177 IEFAWVLVNNSIVIVGGTTEKHPTTKKMVLVGEIFQFNLNTLKWHVIG 224 (274)
Q Consensus 177 ~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~i~~yd~~~~~W~~~~ 224 (274)
.++++...++.||+. ....... .++..|.++..++.+.
T Consensus 295 r~~~~s~~g~~l~Va-~~~s~~v---------~vf~~d~~tG~l~~~~ 332 (345)
T PF10282_consen 295 RHFAFSPDGRYLYVA-NQDSNTV---------SVFDIDPDTGKLTPVG 332 (345)
T ss_dssp EEEEE-TTSSEEEEE-ETTTTEE---------EEEEEETTTTEEEEEE
T ss_pred cEEEEeCCCCEEEEE-ecCCCeE---------EEEEEeCCCCcEEEec
Confidence 113222234445554 3333221 4555577888898764
No 82
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=84.86 E-value=22 Score=30.94 Aligned_cols=104 Identities=10% Similarity=0.145 Sum_probs=55.3
Q ss_pred CCceeeccCCCCCCCcceeEEeCCEEEEEccCCCCCCCCCCCCccccccCceeecCceEEeCCCCCeEecCC-----CCC
Q 024009 98 EKEWRTEIPIPRGGPHRACVVVDDRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYDDVYMLDDEMKWKVLPS-----MPK 172 (274)
Q Consensus 98 ~~~W~~~~~~p~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~W~~~~~-----~~~ 172 (274)
.+.|+.+...... .--++.++|++|.+.-. .+++..+...+-+++.+ +..
T Consensus 189 ~~~Wt~l~~~~~~--~~DIi~~kGkfYAvD~~-----------------------G~l~~i~~~l~i~~v~~~i~~~~~~ 243 (373)
T PLN03215 189 GNVLKALKQMGYH--FSDIIVHKGQTYALDSI-----------------------GIVYWINSDLEFSRFGTSLDENITD 243 (373)
T ss_pred CCeeeEccCCCce--eeEEEEECCEEEEEcCC-----------------------CeEEEEecCCceeeecceecccccC
Confidence 4789988642222 23678899999998321 23455431111112221 111
Q ss_pred CCccceeeEEEeCCEEEEEeccCCCCCC--------cccccccCceEEEEcCCCceEEeccCC
Q 024009 173 PDSHIEFAWVLVNNSIVIVGGTTEKHPT--------TKKMVLVGEIFQFNLNTLKWHVIGKLP 227 (274)
Q Consensus 173 ~~~~~~~~~~~~~~~l~v~GG~~~~~~~--------~~~~~~~~~i~~yd~~~~~W~~~~~~p 227 (274)
+......-.+...|+|+++......... ..+. .-=.|++.|.+..+|.++..|.
T Consensus 244 g~~~~~~yLVEs~GdLLmV~R~~~~~~~~~~~~~~~~~~t-~~f~VfklD~~~~~WveV~sLg 305 (373)
T PLN03215 244 GCWTGDRRFVECCGELYIVERLPKESTWKRKADGFEYSRT-VGFKVYKFDDELAKWMEVKTLG 305 (373)
T ss_pred CcccCceeEEEECCEEEEEEEEccCcccccccccccccce-eEEEEEEEcCCCCcEEEecccC
Confidence 1111113356778889999875322110 0000 0115677798899999997775
No 83
>PRK04043 tolB translocation protein TolB; Provisional
Probab=83.12 E-value=33 Score=30.48 Aligned_cols=151 Identities=10% Similarity=0.045 Sum_probs=76.0
Q ss_pred CeeEEEECCCCCeeeCCCCCCCCCCceEEEE-CC-eEEEEcCCCCCCCCCCccceEeeeecCCCCCCceeeccCCCCCCC
Q 024009 35 AHTFVLDTETKKWQDLPPLPVPRYAPATQLW-RG-RLHVMGGSGENRYTPEVDHWSLAVKDGKPLEKEWRTEIPIPRGGP 112 (274)
Q Consensus 35 ~~~~~~d~~~~~W~~~~~~~~~r~~~~~~~~-~~-~iyv~GG~~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~~~ 112 (274)
.++|++|+.+++=+.+...+.. ....... ++ +|.+.-... . +..+|.+|..+..++.+...+....
T Consensus 213 ~~Iyv~dl~tg~~~~lt~~~g~--~~~~~~SPDG~~la~~~~~~-----g-----~~~Iy~~dl~~g~~~~LT~~~~~d~ 280 (419)
T PRK04043 213 PTLYKYNLYTGKKEKIASSQGM--LVVSDVSKDGSKLLLTMAPK-----G-----QPDIYLYDTNTKTLTQITNYPGIDV 280 (419)
T ss_pred CEEEEEECCCCcEEEEecCCCc--EEeeEECCCCCEEEEEEccC-----C-----CcEEEEEECCCCcEEEcccCCCccC
Confidence 5899999988876666542211 1111121 44 555443221 1 1234444466777777766554222
Q ss_pred cceeEEeCCEEEEEccCCCCCCCCCCCCccccccCceeecCceEEeC-CCCCeEecCCCCCCCccceeeEEEeCCEEEEE
Q 024009 113 HRACVVVDDRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYDDVYMLD-DEMKWKVLPSMPKPDSHIEFAWVLVNNSIVIV 191 (274)
Q Consensus 113 ~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d-~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~v~ 191 (274)
......-+.+|++.....+. .++|.+| .+.+.+++..... .. .. ..-+++.+++
T Consensus 281 ~p~~SPDG~~I~F~Sdr~g~--------------------~~Iy~~dl~~g~~~rlt~~g~--~~--~~-~SPDG~~Ia~ 335 (419)
T PRK04043 281 NGNFVEDDKRIVFVSDRLGY--------------------PNIFMKKLNSGSVEQVVFHGK--NN--SS-VSTYKNYIVY 335 (419)
T ss_pred ccEECCCCCEEEEEECCCCC--------------------ceEEEEECCCCCeEeCccCCC--cC--ce-ECCCCCEEEE
Confidence 22222234467776543221 4788888 6666655543211 11 22 3334443343
Q ss_pred eccCCCCCCcccccccCceEEEEcCCCceEEecc
Q 024009 192 GGTTEKHPTTKKMVLVGEIFQFNLNTLKWHVIGK 225 (274)
Q Consensus 192 GG~~~~~~~~~~~~~~~~i~~yd~~~~~W~~~~~ 225 (274)
-.......... -...++.+|+.+..++.+..
T Consensus 336 ~~~~~~~~~~~---~~~~I~v~d~~~g~~~~LT~ 366 (419)
T PRK04043 336 SSRETNNEFGK---NTFNLYLISTNSDYIRRLTA 366 (419)
T ss_pred EEcCCCcccCC---CCcEEEEEECCCCCeEECCC
Confidence 33322111000 02379999999999988754
No 84
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=82.92 E-value=31 Score=29.93 Aligned_cols=153 Identities=16% Similarity=0.205 Sum_probs=78.6
Q ss_pred EEeCCEEEEEcCcCCCCCCCCCCeeEEEECCCCC--eeeCCCCCCCCCCceEEEECCeEEEEcCCCCCCCCCCccceEee
Q 024009 13 VTDGRYIYVVTGQYGPQCRGPTAHTFVLDTETKK--WQDLPPLPVPRYAPATQLWRGRLHVMGGSGENRYTPEVDHWSLA 90 (274)
Q Consensus 13 ~~~~~~iyv~GG~~~~~~~~~~~~~~~~d~~~~~--W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~ 90 (274)
+..++++|+... --.++.+|+.+.+ |+.....-......-....+++||+-.... ...+++.
T Consensus 65 ~~~dg~v~~~~~---------~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G~i~~g~~~g------~~y~ld~- 128 (370)
T COG1520 65 ADGDGTVYVGTR---------DGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDGKIYVGSWDG------KLYALDA- 128 (370)
T ss_pred EeeCCeEEEecC---------CCcEEEEeCCCCcEEecccCcCcceeccCceEEeCCeEEEecccc------eEEEEEC-
Confidence 566888888711 1268999999987 866543201111111222267776643222 1222221
Q ss_pred eecCCCCCCceeeccCCCCCCCcceeEEeCCEEEEEccCCCCCCCCCCCCccccccCceeecCceEEeC---CCCCeEec
Q 024009 91 VKDGKPLEKEWRTEIPIPRGGPHRACVVVDDRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYDDVYMLD---DEMKWKVL 167 (274)
Q Consensus 91 ~~~~d~~~~~W~~~~~~p~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d---~~~~W~~~ 167 (274)
+.-+..|+...+.. .......+..++.+|+.. .+ ..++.+| .+..|+.-
T Consensus 129 ----~~G~~~W~~~~~~~-~~~~~~~v~~~~~v~~~s-~~----------------------g~~~al~~~tG~~~W~~~ 180 (370)
T COG1520 129 ----STGTLVWSRNVGGS-PYYASPPVVGDGTVYVGT-DD----------------------GHLYALNADTGTLKWTYE 180 (370)
T ss_pred ----CCCcEEEEEecCCC-eEEecCcEEcCcEEEEec-CC----------------------CeEEEEEccCCcEEEEEe
Confidence 12566787754442 333334556667777764 11 3467776 34568744
Q ss_pred CCCC-CCCccceeeEEEeCCEEEEEeccCCCCCCcccccccCceEEEEcCCC--ceEE
Q 024009 168 PSMP-KPDSHIEFAWVLVNNSIVIVGGTTEKHPTTKKMVLVGEIFQFNLNTL--KWHV 222 (274)
Q Consensus 168 ~~~~-~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~i~~yd~~~~--~W~~ 222 (274)
.+.+ ..+.. ...+..++.+|+.... . . ..++.+|+.+. .|+.
T Consensus 181 ~~~~~~~~~~--~~~~~~~~~vy~~~~~-~-~---------~~~~a~~~~~G~~~w~~ 225 (370)
T COG1520 181 TPAPLSLSIY--GSPAIASGTVYVGSDG-Y-D---------GILYALNAEDGTLKWSQ 225 (370)
T ss_pred cCCccccccc--cCceeecceEEEecCC-C-c---------ceEEEEEccCCcEeeee
Confidence 4332 22222 1223556666665322 1 1 16899998766 4764
No 85
>PRK04792 tolB translocation protein TolB; Provisional
Probab=81.47 E-value=40 Score=30.24 Aligned_cols=59 Identities=14% Similarity=0.196 Sum_probs=33.6
Q ss_pred CceEEeC-CCCCeEecCCCCCCCccceeeEEEeCC-EEEEEeccCCCCCCcccccccCceEEEEcCCCceEEec
Q 024009 153 DDVYMLD-DEMKWKVLPSMPKPDSHIEFAWVLVNN-SIVIVGGTTEKHPTTKKMVLVGEIFQFNLNTLKWHVIG 224 (274)
Q Consensus 153 ~~~~~~d-~~~~W~~~~~~~~~~~~~~~~~~~~~~-~l~v~GG~~~~~~~~~~~~~~~~i~~yd~~~~~W~~~~ 224 (274)
.++|.+| .+.+.+.+......... .+ ..-++ .|++.....+ ...+|.+|+++.+++++.
T Consensus 286 ~~Iy~~dl~tg~~~~lt~~~~~~~~--p~-wSpDG~~I~f~s~~~g----------~~~Iy~~dl~~g~~~~Lt 346 (448)
T PRK04792 286 PEIYVVDIATKALTRITRHRAIDTE--PS-WHPDGKSLIFTSERGG----------KPQIYRVNLASGKVSRLT 346 (448)
T ss_pred eEEEEEECCCCCeEECccCCCCccc--eE-ECCCCCEEEEEECCCC----------CceEEEEECCCCCEEEEe
Confidence 4788888 77777766543221111 22 22344 4444432211 127999999999888773
No 86
>PRK03629 tolB translocation protein TolB; Provisional
Probab=81.28 E-value=39 Score=30.05 Aligned_cols=61 Identities=13% Similarity=0.072 Sum_probs=31.9
Q ss_pred CceEEeC-CCCCeEecCCCCCCCccceeeEEEeCCEEEEEeccCCCCCCcccccccCceEEEEcCCCceEEecc
Q 024009 153 DDVYMLD-DEMKWKVLPSMPKPDSHIEFAWVLVNNSIVIVGGTTEKHPTTKKMVLVGEIFQFNLNTLKWHVIGK 225 (274)
Q Consensus 153 ~~~~~~d-~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~i~~yd~~~~~W~~~~~ 225 (274)
..+|.+| .+..-+.+........ .....-+++.+++....... ..++.+|+.+.+++.+..
T Consensus 311 ~~Iy~~d~~~g~~~~lt~~~~~~~---~~~~SpDG~~Ia~~~~~~g~---------~~I~~~dl~~g~~~~Lt~ 372 (429)
T PRK03629 311 PQVYKVNINGGAPQRITWEGSQNQ---DADVSSDGKFMVMVSSNGGQ---------QHIAKQDLATGGVQVLTD 372 (429)
T ss_pred ceEEEEECCCCCeEEeecCCCCcc---CEEECCCCCEEEEEEccCCC---------ceEEEEECCCCCeEEeCC
Confidence 3678777 5555554432211111 11223345444443332221 279999999999887753
No 87
>PRK04922 tolB translocation protein TolB; Provisional
Probab=81.27 E-value=39 Score=30.04 Aligned_cols=59 Identities=10% Similarity=0.103 Sum_probs=31.4
Q ss_pred CceEEeC-CCCCeEecCCCCCCCccceeeEEEeCCE-EEEEeccCCCCCCcccccccCceEEEEcCCCceEEec
Q 024009 153 DDVYMLD-DEMKWKVLPSMPKPDSHIEFAWVLVNNS-IVIVGGTTEKHPTTKKMVLVGEIFQFNLNTLKWHVIG 224 (274)
Q Consensus 153 ~~~~~~d-~~~~W~~~~~~~~~~~~~~~~~~~~~~~-l~v~GG~~~~~~~~~~~~~~~~i~~yd~~~~~W~~~~ 224 (274)
.++|.+| .+.+-+.+......... .+ ..-+++ |++.....+ ...+|.+|+.+.+.+++.
T Consensus 272 ~~Iy~~d~~~g~~~~lt~~~~~~~~--~~-~spDG~~l~f~sd~~g----------~~~iy~~dl~~g~~~~lt 332 (433)
T PRK04922 272 PEIYVMDLGSRQLTRLTNHFGIDTE--PT-WAPDGKSIYFTSDRGG----------RPQIYRVAASGGSAERLT 332 (433)
T ss_pred ceEEEEECCCCCeEECccCCCCccc--eE-ECCCCCEEEEEECCCC----------CceEEEEECCCCCeEEee
Confidence 4788888 66665555433221111 22 223444 444322211 127999999888887763
No 88
>PF12217 End_beta_propel: Catalytic beta propeller domain of bacteriophage endosialidase; InterPro: IPR024428 This entry represents the beta propeller domain of endosialidases, which consists of catalytically active part of the enzymes. This core domain forms stable SDS-resistant trimers. There is a nested beta barrel domain in this domain. This domain is typically between 443 and 460 amino acids in length [].; PDB: 1V0E_B 1V0F_E 3JU4_A 3GVL_A 3GVK_B 3GVJ_A.
Probab=80.75 E-value=30 Score=28.43 Aligned_cols=209 Identities=17% Similarity=0.251 Sum_probs=95.7
Q ss_pred eEEeCCEEEE---EcCcCCCCCCCCCCeeEEEECCC-CCeeeC---CCC----CC-CCCCceEEEECCeEEEEcCC--CC
Q 024009 12 MVTDGRYIYV---VTGQYGPQCRGPTAHTFVLDTET-KKWQDL---PPL----PV-PRYAPATQLWRGRLHVMGGS--GE 77 (274)
Q Consensus 12 ~~~~~~~iyv---~GG~~~~~~~~~~~~~~~~d~~~-~~W~~~---~~~----~~-~r~~~~~~~~~~~iyv~GG~--~~ 77 (274)
+.+.++.||. .|=+-+. +.+.-.|+=.... ++|+.- .++ |. .-+++++-+++++||.+=-. -.
T Consensus 21 aFVy~~VIYAPfM~~~RHGv---~~LhvaWVkSgDdG~TWttPEwLtd~H~~yptvnyHCmSMGv~~NRLfa~iEtR~~a 97 (367)
T PF12217_consen 21 AFVYDNVIYAPFMAGDRHGV---DNLHVAWVKSGDDGQTWTTPEWLTDLHPDYPTVNYHCMSMGVVGNRLFAVIETRTVA 97 (367)
T ss_dssp -EEETTEEEEEEEEESSSSS---TT-EEEEEEESSTTSS----EESS---TTTTTEEEE-B-EEEETTEEEEEEEEEETT
T ss_pred ceeecCeeecccccccccCc---cceEEEEEEecCCCCcccCchhhhhcCCCCCccceeeeeeeeecceeeEEEeehhhh
Confidence 4566777753 3333332 3355556555554 468652 222 22 23567788899999986431 11
Q ss_pred CCCCCCccceEeeeecCCCCCCceee--ccCCCC-------CCCcceeEEeCCEEEEEccCCCCCCCCCCCCccccccCc
Q 024009 78 NRYTPEVDHWSLAVKDGKPLEKEWRT--EIPIPR-------GGPHRACVVVDDRLLVIGGQEGDFMAKPGSPIFKCSRRN 148 (274)
Q Consensus 78 ~~~~~~~~~~~~~~~~~d~~~~~W~~--~~~~p~-------~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~ 148 (274)
.......+.|+-.++ ..+.|+. ++..|. ...-|+.+++++.=|-+|=+.++... +.
T Consensus 98 ~~km~~~~Lw~RpMF----~~spW~~teL~~~~~~~~a~~~vTe~HSFa~i~~~~fA~GyHnGD~sP----------Re- 162 (367)
T PF12217_consen 98 SNKMVRAELWSRPMF----HDSPWRITELGTIASFTSAGVAVTELHSFATIDDNQFAVGYHNGDVSP----------RE- 162 (367)
T ss_dssp T--EEEEEEEEEE-S----TTS--EEEEEES-TT--------SEEEEEEE-SSS-EEEEEEE-SSSS-----------E-
T ss_pred hhhhhhhhhhccccc----ccCCceeeecccccccccccceeeeeeeeeEecCCceeEEeccCCCCc----------ce-
Confidence 122234555665443 4667765 555554 23346788888887888866554221 00
Q ss_pred eeecCceEEeC--CC-CC--eEecCCCCCCCccceeeEEEeCCEEEEEe-ccCCCCCCcccccccCceEEEEcCCCceEE
Q 024009 149 EVVYDDVYMLD--DE-MK--WKVLPSMPKPDSHIEFAWVLVNNSIVIVG-GTTEKHPTTKKMVLVGEIFQFNLNTLKWHV 222 (274)
Q Consensus 149 ~~~~~~~~~~d--~~-~~--W~~~~~~~~~~~~~~~~~~~~~~~l~v~G-G~~~~~~~~~~~~~~~~i~~yd~~~~~W~~ 222 (274)
..-+|.-+ .+ .. =++++.. ..+...+.++-..++.||+.. |...... -..+.+-+..-..|+.
T Consensus 163 ---~G~~yfs~~~~sp~~~vrr~i~se-y~~~AsEPCvkyY~g~LyLtTRgt~~~~~-------GS~L~rs~d~G~~w~s 231 (367)
T PF12217_consen 163 ---LGFLYFSDAFASPGVFVRRIIPSE-YERNASEPCVKYYDGVLYLTTRGTLPTNP-------GSSLHRSDDNGQNWSS 231 (367)
T ss_dssp ---EEEEEETTTTT-TT--EEEE--GG-G-TTEEEEEEEEETTEEEEEEEES-TTS----------EEEEESSTTSS-EE
T ss_pred ---eeEEEecccccCCcceeeeechhh-hccccccchhhhhCCEEEEEEcCcCCCCC-------cceeeeecccCCchhh
Confidence 11122222 11 11 1233322 333333456778899999975 3333221 2367777778888987
Q ss_pred eccCCCccc--eeeeEEEcCEEEEEccccC
Q 024009 223 IGKLPYRVK--TTLAGYWNGWLYFTSGQRD 250 (274)
Q Consensus 223 ~~~~p~~~~--~~~~~~~~~~l~~~GG~~~ 250 (274)
+ .+|.... ..-.+..++.||+||-+..
T Consensus 232 l-rfp~nvHhtnlPFakvgD~l~mFgsERA 260 (367)
T PF12217_consen 232 L-RFPNNVHHTNLPFAKVGDVLYMFGSERA 260 (367)
T ss_dssp E-E-TT---SS---EEEETTEEEEEEE-SS
T ss_pred c-cccccccccCCCceeeCCEEEEEecccc
Confidence 6 3333322 2334556999999997654
No 89
>smart00284 OLF Olfactomedin-like domains.
Probab=80.07 E-value=32 Score=28.27 Aligned_cols=137 Identities=18% Similarity=0.162 Sum_probs=71.5
Q ss_pred CCceeeccCCCCCCCcceeEEeCCEEEEEccCCCCCCCCCCCCccccccCceeecCceEEeC-CCCCeEecCCCCCCC--
Q 024009 98 EKEWRTEIPIPRGGPHRACVVVDDRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYDDVYMLD-DEMKWKVLPSMPKPD-- 174 (274)
Q Consensus 98 ~~~W~~~~~~p~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d-~~~~W~~~~~~~~~~-- 174 (274)
..++...-.+|.+..+.+.++++|.+|.--..+ ..+..|| .+.+-.....+|.+.
T Consensus 61 ~~~~~~~~~Lp~~~~GtG~VVYngslYY~~~~s----------------------~~iiKydL~t~~v~~~~~Lp~a~y~ 118 (255)
T smart00284 61 MGKNPTDHPLPHAGQGTGVVVYNGSLYFNKFNS----------------------HDICRFDLTTETYQKEPLLNGAGYN 118 (255)
T ss_pred ccCCceEEECCCccccccEEEECceEEEEecCC----------------------ccEEEEECCCCcEEEEEecCccccc
Confidence 334444445788888889999999999854322 4688888 555443333333221
Q ss_pred --------ccceeeEEEeCCEEEEEeccCCCCCCcccccccCceEEEEcCCCceEEeccCCCccc-eeeeEEEcCEEEEE
Q 024009 175 --------SHIEFAWVLVNNSIVIVGGTTEKHPTTKKMVLVGEIFQFNLNTLKWHVIGKLPYRVK-TTLAGYWNGWLYFT 245 (274)
Q Consensus 175 --------~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~i~~yd~~~~~W~~~~~~p~~~~-~~~~~~~~~~l~~~ 245 (274)
.....-.++-++-|+++=....... .=.|-+.|+.+-.-++.=..+.++. ..-+..+-|.||++
T Consensus 119 ~~~~Y~~~~~sdiDlAvDE~GLWvIYat~~~~g-------~ivvSkLnp~tL~ve~tW~T~~~k~sa~naFmvCGvLY~~ 191 (255)
T smart00284 119 NRFPYAWGGFSDIDLAVDENGLWVIYATEQNAG-------KIVISKLNPATLTIENTWITTYNKRSASNAFMICGILYVT 191 (255)
T ss_pred cccccccCCCccEEEEEcCCceEEEEeccCCCC-------CEEEEeeCcccceEEEEEEcCCCcccccccEEEeeEEEEE
Confidence 1111233555666777633322211 0045677776665444322233332 23455556899998
Q ss_pred ccccCCCCCCCCceeecC
Q 024009 246 SGQRDKGPDDPAPRKVHG 263 (274)
Q Consensus 246 GG~~~~~~~~~~~~~~~~ 263 (274)
-.......+-..+||+.+
T Consensus 192 ~s~~~~~~~I~yayDt~t 209 (255)
T smart00284 192 RSLGSKGEKVFYAYDTNT 209 (255)
T ss_pred ccCCCCCcEEEEEEECCC
Confidence 543333333334555433
No 90
>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium []. Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding
Probab=79.05 E-value=34 Score=28.02 Aligned_cols=184 Identities=17% Similarity=0.209 Sum_probs=89.9
Q ss_pred eCCEEEEEcCcCCCCCCCCCCeeEEEECC-----CCCeeeCCCCCCCCCCceEEEECCeEEEEcCCCCCCCCCCccceEe
Q 024009 15 DGRYIYVVTGQYGPQCRGPTAHTFVLDTE-----TKKWQDLPPLPVPRYAPATQLWRGRLHVMGGSGENRYTPEVDHWSL 89 (274)
Q Consensus 15 ~~~~iyv~GG~~~~~~~~~~~~~~~~d~~-----~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~ 89 (274)
..+++|++.+..+. .++.|... .++..+.-.+|.+-.+...++++|.+|.--. ....+-+|+
T Consensus 29 ~~~~iy~~~~~~~~-------~v~ey~~~~~f~~~~~~~~~~~Lp~~~~GtG~vVYngslYY~~~-----~s~~Ivkyd- 95 (250)
T PF02191_consen 29 DSEKIYVTSGFSGN-------TVYEYRNYEDFLRNGRSSRTYKLPYPWQGTGHVVYNGSLYYNKY-----NSRNIVKYD- 95 (250)
T ss_pred CCCCEEEECccCCC-------EEEEEcCHhHHhhcCCCceEEEEeceeccCCeEEECCcEEEEec-----CCceEEEEE-
Confidence 35677887765432 34444322 2233333356666778888888998887532 223344444
Q ss_pred eeecCCCCCCceeeccCCCCCCCc------------ceeEEeCCEEEEEccCCCCCCCCCCCCccccccCceeecCce--
Q 024009 90 AVKDGKPLEKEWRTEIPIPRGGPH------------RACVVVDDRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYDDV-- 155 (274)
Q Consensus 90 ~~~~~d~~~~~W~~~~~~p~~~~~------------~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 155 (274)
..+.+-.....+|.+... .-.++-++-|+++=....+. .......+
T Consensus 96 ------L~t~~v~~~~~L~~A~~~n~~~y~~~~~t~iD~AvDE~GLWvIYat~~~~--------------g~ivvskld~ 155 (250)
T PF02191_consen 96 ------LTTRSVVARRELPGAGYNNRFPYYWSGYTDIDFAVDENGLWVIYATEDNN--------------GNIVVSKLDP 155 (250)
T ss_pred ------CcCCcEEEEEECCccccccccceecCCCceEEEEEcCCCEEEEEecCCCC--------------CcEEEEeeCc
Confidence 334433322223322221 12234445577774433221 00111111
Q ss_pred EEeCCCCCeEecCCCCCCCccceeeEEEeCCEEEEEeccCCCCCCcccccccCceEEEEcCCCceEEeccCC--Ccccee
Q 024009 156 YMLDDEMKWKVLPSMPKPDSHIEFAWVLVNNSIVIVGGTTEKHPTTKKMVLVGEIFQFNLNTLKWHVIGKLP--YRVKTT 233 (274)
Q Consensus 156 ~~~d~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~i~~yd~~~~~W~~~~~~p--~~~~~~ 233 (274)
..+.-...|.. ..+..... . +.+.=|.||++-....... .-.+.||+.+++=+.+ .++ .+....
T Consensus 156 ~tL~v~~tw~T--~~~k~~~~--n-aFmvCGvLY~~~s~~~~~~--------~I~yafDt~t~~~~~~-~i~f~~~~~~~ 221 (250)
T PF02191_consen 156 ETLSVEQTWNT--SYPKRSAG--N-AFMVCGVLYATDSYDTRDT--------EIFYAFDTYTGKEEDV-SIPFPNPYGNI 221 (250)
T ss_pred ccCceEEEEEe--ccCchhhc--c-eeeEeeEEEEEEECCCCCc--------EEEEEEECCCCceece-eeeeccccCce
Confidence 11112234553 23332222 2 3455567888865544321 1569999998876653 344 333455
Q ss_pred eeEEE---cCEEEEE
Q 024009 234 LAGYW---NGWLYFT 245 (274)
Q Consensus 234 ~~~~~---~~~l~~~ 245 (274)
++..+ +.+||+.
T Consensus 222 ~~l~YNP~dk~LY~w 236 (250)
T PF02191_consen 222 SMLSYNPRDKKLYAW 236 (250)
T ss_pred EeeeECCCCCeEEEE
Confidence 55555 6888887
No 91
>PF13859 BNR_3: BNR repeat-like domain; PDB: 3B69_A.
Probab=76.94 E-value=44 Score=28.40 Aligned_cols=198 Identities=17% Similarity=0.292 Sum_probs=83.7
Q ss_pred eeEEeCCEEEEEcCcC-CCCC-CCCCCeeEEEEC-CCCCeeeCCC---C--CCCC---CCceEEEECCeEEEEcCCCCCC
Q 024009 11 GMVTDGRYIYVVTGQY-GPQC-RGPTAHTFVLDT-ETKKWQDLPP---L--PVPR---YAPATQLWRGRLHVMGGSGENR 79 (274)
Q Consensus 11 ~~~~~~~~iyv~GG~~-~~~~-~~~~~~~~~~d~-~~~~W~~~~~---~--~~~r---~~~~~~~~~~~iyv~GG~~~~~ 79 (274)
+++.+++.|+.+..-- .... .....-...+.. ...+|+.... . ...| ...+.++-+++||++-|.-...
T Consensus 3 SLV~vgGvv~AvAEa~~~~~~~~~~~~ias~~~~~~g~tw~~~~~~~~~~~~~~~v~v~rPTtvvkgn~IymLvG~y~~~ 82 (310)
T PF13859_consen 3 SLVEVGGVVFAVAEAQCKKSNDSGFTDIASEYSTDNGETWKAEVAVLNDDGSKKRVDVSRPTTVVKGNKIYMLVGSYSRS 82 (310)
T ss_dssp EEEEETTEEEEEEEEESS-S-SSS-EEEEEEEESSSSSS-EEEEEE----SS-TT-EEEEEEEEEETTEEEEEEEEESS-
T ss_pred CEEEECCEEEEEEEEEEccCCCCCceeEEEeEeeccccccccceeeecccccccccccceeeeeecceeEEEEEEEEecc
Confidence 5677899998885431 1110 111112223433 3457876421 1 1112 3455556699999977753322
Q ss_pred CCCCccceEeeeecCCCCCCceeeccCCCCCCCcceeEEeCCEEEEEccCCCCCCCCCCCCccccc---cCce-eecCce
Q 024009 80 YTPEVDHWSLAVKDGKPLEKEWRTEIPIPRGGPHRACVVVDDRLLVIGGQEGDFMAKPGSPIFKCS---RRNE-VVYDDV 155 (274)
Q Consensus 80 ~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~---~~~~-~~~~~~ 155 (274)
. ....|.+-++..+....+|.....++....... +-++-||-.+-.+ ..|.-.|.-+ ...+ .++.-+
T Consensus 83 ~--~~~~~~llLvks~~~g~~W~~~~~l~~~~~~~~------~~figgGGSGV~m-~dGTLVFPv~a~~~~~~~~~SlIi 153 (310)
T PF13859_consen 83 A--GADDWGLLLVKSTDGGIKWGDTKSLPSTSFQSW------KQFIGGGGSGVVM-EDGTLVFPVQATKKNGDGTVSLII 153 (310)
T ss_dssp ---SSTTEEEEEEEEESSSSEE---EE-GGGS-EEE------EEEEE-SEE-EE--TTS-EEEEEEEEETT---EEEEEE
T ss_pred c--cccccceeeeeccCCcceeeecccCCchhcccc------ceeecCCCCceEE-cCCCEEEEEeeeccCccceEEEEE
Confidence 2 233555555543344456988766654322100 0122222110000 0000001000 1112 233334
Q ss_pred EEeCCCCCeEecCCCCCCCccceeeEEEe-CCEEEEEeccCCCCCCcccccccCceEEEEcCCCceEEe-ccCC
Q 024009 156 YMLDDEMKWKVLPSMPKPDSHIEFAWVLV-NNSIVIVGGTTEKHPTTKKMVLVGEIFQFNLNTLKWHVI-GKLP 227 (274)
Q Consensus 156 ~~~d~~~~W~~~~~~~~~~~~~~~~~~~~-~~~l~v~GG~~~~~~~~~~~~~~~~i~~yd~~~~~W~~~-~~~p 227 (274)
|.-|....|+--..++..-+. .++++.+ +++|+++.-+..... .+|.=.-.-.+|++. ++++
T Consensus 154 YS~d~g~~W~lskg~s~~gC~-~psv~EWe~gkLlM~~~c~~g~r---------rVYeS~DmG~tWtea~gtls 217 (310)
T PF13859_consen 154 YSTDDGKTWKLSKGMSPAGCS-DPSVVEWEDGKLLMMTACDDGRR---------RVYESGDMGTTWTEALGTLS 217 (310)
T ss_dssp EESSTTSS-EE-S----TT-E-EEEEEEE-TTEEEEEEE-TTS------------EEEESSTTSS-EE-TTTTT
T ss_pred EECCCccceEeccccCCCCcc-eEEEEeccCCeeEEEEecccceE---------EEEEEcccceehhhccCccc
Confidence 433356789988877765444 5778888 789999975544321 455555566689984 6665
No 92
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=76.58 E-value=56 Score=29.18 Aligned_cols=98 Identities=14% Similarity=0.144 Sum_probs=48.8
Q ss_pred eCCEEEEEcCcCCCCCCCCCCeeEEEECCCCC-eeeCCCCCCCCCCceEEEECCeEEEEcCCCCCCCCCCccceEeeeec
Q 024009 15 DGRYIYVVTGQYGPQCRGPTAHTFVLDTETKK-WQDLPPLPVPRYAPATQLWRGRLHVMGGSGENRYTPEVDHWSLAVKD 93 (274)
Q Consensus 15 ~~~~iyv~GG~~~~~~~~~~~~~~~~d~~~~~-W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~ 93 (274)
.+++++.+|+.+ -.+.+||.++.. ...+..-..|...-.-...++.+++.|+-+ ..+..|+.
T Consensus 78 ~DG~LlaaGD~s--------G~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd-----~v~k~~d~---- 140 (487)
T KOG0310|consen 78 SDGRLLAAGDES--------GHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDD-----KVVKYWDL---- 140 (487)
T ss_pred cCCeEEEccCCc--------CcEEEeccccHHHHHHHhhccCceeEEEecccCCeEEEecCCC-----ceEEEEEc----
Confidence 378899998743 346788855421 111111111212122223478888888643 22233332
Q ss_pred CCCCCCcee-eccCCCCCCCcceeEEeCCEEEEEccCCCC
Q 024009 94 GKPLEKEWR-TEIPIPRGGPHRACVVVDDRLLVIGGQEGD 132 (274)
Q Consensus 94 ~d~~~~~W~-~~~~~p~~~~~~~~~~~~~~iyv~GG~~~~ 132 (274)
.+..=+ .+....-.....++....+.|++.||+++.
T Consensus 141 ---s~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~ 177 (487)
T KOG0310|consen 141 ---STAYVQAELSGHTDYVRCGDISPANDHIVVTGSYDGK 177 (487)
T ss_pred ---CCcEEEEEecCCcceeEeeccccCCCeEEEecCCCce
Confidence 121111 222222222223455667889999999865
No 93
>PRK02889 tolB translocation protein TolB; Provisional
Probab=76.09 E-value=56 Score=28.99 Aligned_cols=16 Identities=13% Similarity=0.198 Sum_probs=12.8
Q ss_pred ceEEEEcCCCceEEec
Q 024009 209 EIFQFNLNTLKWHVIG 224 (274)
Q Consensus 209 ~i~~yd~~~~~W~~~~ 224 (274)
.++.+|+.+.+.+.+.
T Consensus 353 ~I~v~d~~~g~~~~lt 368 (427)
T PRK02889 353 KLYVQDLATGQVTALT 368 (427)
T ss_pred EEEEEECCCCCeEEcc
Confidence 6999999888877663
No 94
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=74.38 E-value=70 Score=29.46 Aligned_cols=95 Identities=20% Similarity=0.232 Sum_probs=52.4
Q ss_pred eeEEeCCEEEEEccCCCCCCCCCCCCccccccCceeecCceEEeC-C--CCCeEecCCCCCCCcc------ceeeEEEeC
Q 024009 115 ACVVVDDRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYDDVYMLD-D--EMKWKVLPSMPKPDSH------IEFAWVLVN 185 (274)
Q Consensus 115 ~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d-~--~~~W~~~~~~~~~~~~------~~~~~~~~~ 185 (274)
.-++.++.||+.... ..++++| . +..|+.-...+..... ...+.++.+
T Consensus 64 tPvv~~g~vyv~s~~-----------------------g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~~ 120 (527)
T TIGR03075 64 QPLVVDGVMYVTTSY-----------------------SRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALYD 120 (527)
T ss_pred CCEEECCEEEEECCC-----------------------CcEEEEECCCCceeeEecCCCCcccccccccccccccceEEC
Confidence 446678999986542 2478887 4 4568765543321110 012346677
Q ss_pred CEEEEEeccCCCCCCcccccccCceEEEEcCCCc--eEEe-ccCCCc-cceeeeEEEcCEEEEE
Q 024009 186 NSIVIVGGTTEKHPTTKKMVLVGEIFQFNLNTLK--WHVI-GKLPYR-VKTTLAGYWNGWLYFT 245 (274)
Q Consensus 186 ~~l~v~GG~~~~~~~~~~~~~~~~i~~yd~~~~~--W~~~-~~~p~~-~~~~~~~~~~~~l~~~ 245 (274)
++||+... -..++++|.++.+ |+.- ..+... ....+-++.++.||+-
T Consensus 121 ~~v~v~t~-------------dg~l~ALDa~TGk~~W~~~~~~~~~~~~~tssP~v~~g~Vivg 171 (527)
T TIGR03075 121 GKVFFGTL-------------DARLVALDAKTGKVVWSKKNGDYKAGYTITAAPLVVKGKVITG 171 (527)
T ss_pred CEEEEEcC-------------CCEEEEEECCCCCEEeecccccccccccccCCcEEECCEEEEe
Confidence 88886431 1279999998775 7642 222211 1123334567877765
No 95
>PF08268 FBA_3: F-box associated domain; InterPro: IPR013187 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=74.13 E-value=23 Score=25.38 Aligned_cols=58 Identities=14% Similarity=0.076 Sum_probs=40.1
Q ss_pred EeCCEEEEEeccCCCCCCcccccccCceEEEEcCCCceEEecc---CCCccceeeeEEEcCEEEEEccc
Q 024009 183 LVNNSIVIVGGTTEKHPTTKKMVLVGEIFQFNLNTLKWHVIGK---LPYRVKTTLAGYWNGWLYFTSGQ 248 (274)
Q Consensus 183 ~~~~~l~v~GG~~~~~~~~~~~~~~~~i~~yd~~~~~W~~~~~---~p~~~~~~~~~~~~~~l~~~GG~ 248 (274)
-.||-+|-+.-.... ....|.+||+.+.+|+.+.. .........++.++|+|-++.-.
T Consensus 3 cinGvly~~a~~~~~--------~~~~IvsFDv~~E~f~~i~~P~~~~~~~~~~~L~~~~G~L~~v~~~ 63 (129)
T PF08268_consen 3 CINGVLYWLAWSEDS--------DNNVIVSFDVRSEKFRFIKLPEDPYSSDCSSTLIEYKGKLALVSYN 63 (129)
T ss_pred EECcEEEeEEEECCC--------CCcEEEEEEcCCceEEEEEeeeeeccccCccEEEEeCCeEEEEEec
Confidence 356777776655111 13489999999999988733 23444578888899999987543
No 96
>PRK00178 tolB translocation protein TolB; Provisional
Probab=72.69 E-value=68 Score=28.36 Aligned_cols=60 Identities=13% Similarity=0.265 Sum_probs=33.5
Q ss_pred CceEEeC-CCCCeEecCCCCCCCccceeeEEEeCCEEEEEeccCCCCCCcccccccCceEEEEcCCCceEEec
Q 024009 153 DDVYMLD-DEMKWKVLPSMPKPDSHIEFAWVLVNNSIVIVGGTTEKHPTTKKMVLVGEIFQFNLNTLKWHVIG 224 (274)
Q Consensus 153 ~~~~~~d-~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~i~~yd~~~~~W~~~~ 224 (274)
.++|.+| .+.+.+.+...+..... .....-+.+|++.....+ ...++.+|+.+.+++++.
T Consensus 267 ~~Iy~~d~~~~~~~~lt~~~~~~~~--~~~spDg~~i~f~s~~~g----------~~~iy~~d~~~g~~~~lt 327 (430)
T PRK00178 267 PEIYVMDLASRQLSRVTNHPAIDTE--PFWGKDGRTLYFTSDRGG----------KPQIYKVNVNGGRAERVT 327 (430)
T ss_pred ceEEEEECCCCCeEEcccCCCCcCC--eEECCCCCEEEEEECCCC----------CceEEEEECCCCCEEEee
Confidence 4788888 77777766543322111 222222345555432111 127999999988887763
No 97
>PF08950 DUF1861: Protein of unknown function (DUF1861); InterPro: IPR015045 This hypothetical protein, found in bacteria and in the eukaryote Leishmania, has no known function. ; PDB: 2B4W_A.
Probab=72.53 E-value=55 Score=27.19 Aligned_cols=192 Identities=15% Similarity=0.161 Sum_probs=78.5
Q ss_pred EEeCCEEEEEcCcCCCCCCCCCCeeEEEECC-CCCeeeCCCCC-CCCCCceEEEECCeEEEEcCCCCCCCCCCccceEee
Q 024009 13 VTDGRYIYVVTGQYGPQCRGPTAHTFVLDTE-TKKWQDLPPLP-VPRYAPATQLWRGRLHVMGGSGENRYTPEVDHWSLA 90 (274)
Q Consensus 13 ~~~~~~iyv~GG~~~~~~~~~~~~~~~~d~~-~~~W~~~~~~~-~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~ 90 (274)
...+++.+++|-.+..+. =..+.+..|.-. .++|+.++..| ...-..-.+.+++++. +||..-.......-.|...
T Consensus 33 F~~~Gk~~IaGRVE~Rds-we~S~V~fF~e~g~~~w~~v~~~~~~~LqDPF~t~I~geli-fGGvev~~~~~~~l~wrt~ 110 (298)
T PF08950_consen 33 FEYNGKTVIAGRVEKRDS-WEHSEVRFFEETGKDEWTPVEGAPVFQLQDPFVTRIQGELI-FGGVEVFPNDGGVLSWRTV 110 (298)
T ss_dssp EEETTEEEEEEEEE-TT--SS--EEEEEEEEETTEEEE-TT---BS-EEEEEEEETTEEE-EEEEEEE-------EEEEE
T ss_pred eeECCEEEEEeeeecCCc-hhccEEEEEEEeCCCeEEECCCcceEEecCcceeeECCEEE-EeeEEEeecCCCceEEEEE
Confidence 456888888887765542 035778888777 78999998644 4456666777888764 5664322233444556655
Q ss_pred eecCCCCCCceeeccC--CCCCCCcceeEEeCCEEEEEccCCCCCCCCCCCCccccccCceeecCceEEeCCCCCeEec-
Q 024009 91 VKDGKPLEKEWRTEIP--IPRGGPHRACVVVDDRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYDDVYMLDDEMKWKVL- 167 (274)
Q Consensus 91 ~~~~d~~~~~W~~~~~--~p~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~W~~~- 167 (274)
.|...+..-+--...| |.-.| -+-..+++|-|+.-....+. ...-...+-.+| ..+-..+
T Consensus 111 FYrG~~~~L~~f~~GPd~MKDiR---lveL~DG~IGVfTRPqgegr-------------g~IGft~i~sL~-dLt~e~I~ 173 (298)
T PF08950_consen 111 FYRGKIHDLKYFFTGPDGMKDIR---LVELADGRIGVFTRPQGEGR-------------GKIGFTIIDSLD-DLTPEVIE 173 (298)
T ss_dssp EEEEETTEEEEEEE--TT----E---EEE-TTS-EEEEE----------------------EEEEEES-GG-G-SHHHHH
T ss_pred EEecChhheeeeecCCcccceeE---EEEecCCeEEEEeCcCCCce-------------eEEeEEEeCChH-HcCHHHHh
Confidence 6554322211111111 33222 33455778888743221111 111111111111 1111111
Q ss_pred --CCCC-----CCCccceeeEEEeCCEEEEEeccCCCCCCccc---ccccCceEEEEcCCCceEEe
Q 024009 168 --PSMP-----KPDSHIEFAWVLVNNSIVIVGGTTEKHPTTKK---MVLVGEIFQFNLNTLKWHVI 223 (274)
Q Consensus 168 --~~~~-----~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~---~~~~~~i~~yd~~~~~W~~~ 223 (274)
+.+. ....+..-+....+++|=|+|....-....++ ..+.+...+||+++++-+.+
T Consensus 174 ~Apll~~~f~~~eWGG~Nea~lL~~g~iGvlgHia~fd~~g~rh~~~~Yy~~sFvldp~t~~~~~~ 239 (298)
T PF08950_consen 174 EAPLLDGQFSDDEWGGVNEAYLLSNGKIGVLGHIAYFDEDGNRHPINVYYPMSFVLDPDTNEISDM 239 (298)
T ss_dssp T--EES------EEEEEEEEEEETTS-EEEEEEEEE-----------EEEEEEEEE-TTT--EEEE
T ss_pred hCcccccccCcccccCcceeEEecCCcEEEEEEEEEecccCCCceeeeEEEEEEEECCccccccce
Confidence 1111 11122112223457788888765443322221 23566889999999998764
No 98
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=70.84 E-value=87 Score=28.83 Aligned_cols=122 Identities=16% Similarity=0.201 Sum_probs=61.5
Q ss_pred ceEEEECCeEEEEcCCCCCCCCCCccceEeeeecCCCCCCceeeccCCCCCC--------CcceeEEeCCEEEEEccCCC
Q 024009 60 PATQLWRGRLHVMGGSGENRYTPEVDHWSLAVKDGKPLEKEWRTEIPIPRGG--------PHRACVVVDDRLLVIGGQEG 131 (274)
Q Consensus 60 ~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~~--------~~~~~~~~~~~iyv~GG~~~ 131 (274)
.+-+++++.||+..... .+..++. ..-+..|+.-...+... ...+.++.+++||+... +
T Consensus 63 stPvv~~g~vyv~s~~g------~v~AlDa-----~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~~~~v~v~t~-d- 129 (527)
T TIGR03075 63 SQPLVVDGVMYVTTSYS------RVYALDA-----KTGKELWKYDPKLPDDVIPVMCCDVVNRGVALYDGKVFFGTL-D- 129 (527)
T ss_pred cCCEEECCEEEEECCCC------cEEEEEC-----CCCceeeEecCCCCcccccccccccccccceEECCEEEEEcC-C-
Confidence 34456689999865321 1222221 13455677643322111 12235677888887432 1
Q ss_pred CCCCCCCCCccccccCceeecCceEEeC-CC--CCeEecCCCCCCCccceeeEEEeCCEEEEEeccCCCCCCcccccccC
Q 024009 132 DFMAKPGSPIFKCSRRNEVVYDDVYMLD-DE--MKWKVLPSMPKPDSHIEFAWVLVNNSIVIVGGTTEKHPTTKKMVLVG 208 (274)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d-~~--~~W~~~~~~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~ 208 (274)
..++++| .+ ..|+.-..-.........+-++.+++||+-....... ...
T Consensus 130 ---------------------g~l~ALDa~TGk~~W~~~~~~~~~~~~~tssP~v~~g~Vivg~~~~~~~-------~~G 181 (527)
T TIGR03075 130 ---------------------ARLVALDAKTGKVVWSKKNGDYKAGYTITAAPLVVKGKVITGISGGEFG-------VRG 181 (527)
T ss_pred ---------------------CEEEEEECCCCCEEeecccccccccccccCCcEEECCEEEEeecccccC-------CCc
Confidence 3578888 44 4586543211111111233456788877643211111 123
Q ss_pred ceEEEEcCCCc--eEE
Q 024009 209 EIFQFNLNTLK--WHV 222 (274)
Q Consensus 209 ~i~~yd~~~~~--W~~ 222 (274)
.+..||.++.+ |+.
T Consensus 182 ~v~AlD~~TG~~lW~~ 197 (527)
T TIGR03075 182 YVTAYDAKTGKLVWRR 197 (527)
T ss_pred EEEEEECCCCceeEec
Confidence 79999998875 653
No 99
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=70.58 E-value=73 Score=27.84 Aligned_cols=59 Identities=17% Similarity=0.239 Sum_probs=32.0
Q ss_pred CceEEeC-CCCCeEecCCCCCCCccceeeEEEeCC-EEEEEeccCCCCCCcccccccCceEEEEcCCCceEEec
Q 024009 153 DDVYMLD-DEMKWKVLPSMPKPDSHIEFAWVLVNN-SIVIVGGTTEKHPTTKKMVLVGEIFQFNLNTLKWHVIG 224 (274)
Q Consensus 153 ~~~~~~d-~~~~W~~~~~~~~~~~~~~~~~~~~~~-~l~v~GG~~~~~~~~~~~~~~~~i~~yd~~~~~W~~~~ 224 (274)
.++|.+| .+...+.+......... .. ...++ +|++.....+ ...+|.+|+.+.++.++.
T Consensus 258 ~~i~~~d~~~~~~~~l~~~~~~~~~--~~-~s~dg~~l~~~s~~~g----------~~~iy~~d~~~~~~~~l~ 318 (417)
T TIGR02800 258 PDIYVMDLDGKQLTRLTNGPGIDTE--PS-WSPDGKSIAFTSDRGG----------SPQIYMMDADGGEVRRLT 318 (417)
T ss_pred ccEEEEECCCCCEEECCCCCCCCCC--EE-ECCCCCEEEEEECCCC----------CceEEEEECCCCCEEEee
Confidence 4688888 66666666543322111 11 12244 4444432211 127999999988887663
No 100
>PRK13684 Ycf48-like protein; Provisional
Probab=70.50 E-value=68 Score=27.47 Aligned_cols=164 Identities=12% Similarity=0.044 Sum_probs=76.4
Q ss_pred eeEEEECCCCCeeeCCCCCCCCCCceEEEECCeEEEEcCCCCCCCCCCccceEeeeecCCCCCCceeeccCCCCCCCcce
Q 024009 36 HTFVLDTETKKWQDLPPLPVPRYAPATQLWRGRLHVMGGSGENRYTPEVDHWSLAVKDGKPLEKEWRTEIPIPRGGPHRA 115 (274)
Q Consensus 36 ~~~~~d~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~~~~~~ 115 (274)
.+++=+-.-.+|+.+.... .-.-+.+....+..+++.|..+. .|.. .|....+|+.............
T Consensus 153 ~i~~S~DgG~tW~~~~~~~-~g~~~~i~~~~~g~~v~~g~~G~-------i~~s----~~~gg~tW~~~~~~~~~~l~~i 220 (334)
T PRK13684 153 AIYRTTDGGKNWEALVEDA-AGVVRNLRRSPDGKYVAVSSRGN-------FYST----WEPGQTAWTPHQRNSSRRLQSM 220 (334)
T ss_pred eEEEECCCCCCceeCcCCC-cceEEEEEECCCCeEEEEeCCce-------EEEE----cCCCCCeEEEeeCCCcccceee
Confidence 3455554567899886433 22333444444444444333221 1110 0123457888754333222222
Q ss_pred eEEeCCEEEEEccCCCCCCCCCCCCccccccCceeecCceEE-eCCCCCeEecCCCCCC--CccceeeEEEe-CCEEEEE
Q 024009 116 CVVVDDRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYDDVYM-LDDEMKWKVLPSMPKP--DSHIEFAWVLV-NNSIVIV 191 (274)
Q Consensus 116 ~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~d~~~~W~~~~~~~~~--~~~~~~~~~~~-~~~l~v~ 191 (274)
+..-++.++++|... . .+.. -|.-..|+.+.. |.. .... .+++.. +++++++
T Consensus 221 ~~~~~g~~~~vg~~G-~---------------------~~~~s~d~G~sW~~~~~-~~~~~~~~l-~~v~~~~~~~~~~~ 276 (334)
T PRK13684 221 GFQPDGNLWMLARGG-Q---------------------IRFNDPDDLESWSKPII-PEITNGYGY-LDLAYRTPGEIWAG 276 (334)
T ss_pred eEcCCCCEEEEecCC-E---------------------EEEccCCCCCccccccC-Cccccccce-eeEEEcCCCCEEEE
Confidence 233467788886532 1 0110 124568986542 211 1111 222333 5678887
Q ss_pred eccCCCCCCcccccccCceEEEEcCCCceEEecc-CCCccceeeeEE-EcCEEEEEccc
Q 024009 192 GGTTEKHPTTKKMVLVGEIFQFNLNTLKWHVIGK-LPYRVKTTLAGY-WNGWLYFTSGQ 248 (274)
Q Consensus 192 GG~~~~~~~~~~~~~~~~i~~yd~~~~~W~~~~~-~p~~~~~~~~~~-~~~~l~~~GG~ 248 (274)
|.. + .++.-...-.+|+.+.. ...+.....+.. -++++|+.|..
T Consensus 277 G~~-G------------~v~~S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~ 322 (334)
T PRK13684 277 GGN-G------------TLLVSKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFVLGQR 322 (334)
T ss_pred cCC-C------------eEEEeCCCCCCCeECCcCCCCCcceEEEEEeCCCceEEECCC
Confidence 743 1 34444445568988642 112223333443 46788877753
No 101
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=70.46 E-value=51 Score=27.87 Aligned_cols=96 Identities=17% Similarity=0.121 Sum_probs=51.9
Q ss_pred CEEEEEcCcCC-CCCCCCC-CeeEEEECCCC-----CeeeCCCCCCCCCCceEEEECCeEEEEcCCCCCCCCCCccceEe
Q 024009 17 RYIYVVTGQYG-PQCRGPT-AHTFVLDTETK-----KWQDLPPLPVPRYAPATQLWRGRLHVMGGSGENRYTPEVDHWSL 89 (274)
Q Consensus 17 ~~iyv~GG~~~-~~~~~~~-~~~~~~d~~~~-----~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~ 89 (274)
...+++|.... .+...+. -.+..|+.... +++.+......-.-.+++.++++|.+.-| ..+..|++
T Consensus 42 ~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~~~~lv~~~g-------~~l~v~~l 114 (321)
T PF03178_consen 42 KEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLIHSTEVKGPVTAICSFNGRLVVAVG-------NKLYVYDL 114 (321)
T ss_dssp SEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEETTEEEEEET-------TEEEEEEE
T ss_pred cCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEEEEEeecCcceEhhhhCCEEEEeec-------CEEEEEEc
Confidence 35666665422 2211223 56888998885 56666543333334556666888666555 33444443
Q ss_pred eeecCCCCCC-ceeeccCCCCCCCcceeEEeCCEEEEE
Q 024009 90 AVKDGKPLEK-EWRTEIPIPRGGPHRACVVVDDRLLVI 126 (274)
Q Consensus 90 ~~~~~d~~~~-~W~~~~~~p~~~~~~~~~~~~~~iyv~ 126 (274)
... ++...........-..+.+.++.|++.
T Consensus 115 -------~~~~~l~~~~~~~~~~~i~sl~~~~~~I~vg 145 (321)
T PF03178_consen 115 -------DNSKTLLKKAFYDSPFYITSLSVFKNYILVG 145 (321)
T ss_dssp -------ETTSSEEEEEEE-BSSSEEEEEEETTEEEEE
T ss_pred -------cCcccchhhheecceEEEEEEeccccEEEEE
Confidence 233 366666554444555777788866654
No 102
>PRK04043 tolB translocation protein TolB; Provisional
Probab=70.10 E-value=80 Score=28.08 Aligned_cols=59 Identities=22% Similarity=0.295 Sum_probs=37.0
Q ss_pred CceEEeC-CCCCeEecCCCCCCCccceeeEEEeCCEEEEEeccCCCCCCcccccccCceEEEEcCCCceEEe
Q 024009 153 DDVYMLD-DEMKWKVLPSMPKPDSHIEFAWVLVNNSIVIVGGTTEKHPTTKKMVLVGEIFQFNLNTLKWHVI 223 (274)
Q Consensus 153 ~~~~~~d-~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~i~~yd~~~~~W~~~ 223 (274)
.++|.+| .+..++++...+.... ......-+.+|++.-...+ ...|+.+|+.+.+.+++
T Consensus 257 ~~Iy~~dl~~g~~~~LT~~~~~d~--~p~~SPDG~~I~F~Sdr~g----------~~~Iy~~dl~~g~~~rl 316 (419)
T PRK04043 257 PDIYLYDTNTKTLTQITNYPGIDV--NGNFVEDDKRIVFVSDRLG----------YPNIFMKKLNSGSVEQV 316 (419)
T ss_pred cEEEEEECCCCcEEEcccCCCccC--ccEECCCCCEEEEEECCCC----------CceEEEEECCCCCeEeC
Confidence 5799998 7778888865543211 1222333456666643321 23799999999888776
No 103
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=70.02 E-value=40 Score=27.14 Aligned_cols=74 Identities=19% Similarity=0.245 Sum_probs=40.9
Q ss_pred CceEEeCCCCCeEecCCCCCCCccceeeEEE--eCCEEEEEeccCCCCCCcccccccCceEEEEcCCCceEEeccCC---
Q 024009 153 DDVYMLDDEMKWKVLPSMPKPDSHIEFAWVL--VNNSIVIVGGTTEKHPTTKKMVLVGEIFQFNLNTLKWHVIGKLP--- 227 (274)
Q Consensus 153 ~~~~~~d~~~~W~~~~~~~~~~~~~~~~~~~--~~~~l~v~GG~~~~~~~~~~~~~~~~i~~yd~~~~~W~~~~~~p--- 227 (274)
..++.++........-..+. . .+++. .++.+|+.... .+..+|+++.+++.+...+
T Consensus 22 ~~i~~~~~~~~~~~~~~~~~---~--~G~~~~~~~g~l~v~~~~--------------~~~~~d~~~g~~~~~~~~~~~~ 82 (246)
T PF08450_consen 22 GRIYRVDPDTGEVEVIDLPG---P--NGMAFDRPDGRLYVADSG--------------GIAVVDPDTGKVTVLADLPDGG 82 (246)
T ss_dssp TEEEEEETTTTEEEEEESSS---E--EEEEEECTTSEEEEEETT--------------CEEEEETTTTEEEEEEEEETTC
T ss_pred CEEEEEECCCCeEEEEecCC---C--ceEEEEccCCEEEEEEcC--------------ceEEEecCCCcEEEEeeccCCC
Confidence 46888873333333333333 2 22333 46888887542 5667799999998875552
Q ss_pred --CccceeeeEEEcCEEEEE
Q 024009 228 --YRVKTTLAGYWNGWLYFT 245 (274)
Q Consensus 228 --~~~~~~~~~~~~~~l~~~ 245 (274)
..+..-.++.-++.||+.
T Consensus 83 ~~~~~~ND~~vd~~G~ly~t 102 (246)
T PF08450_consen 83 VPFNRPNDVAVDPDGNLYVT 102 (246)
T ss_dssp SCTEEEEEEEE-TTS-EEEE
T ss_pred cccCCCceEEEcCCCCEEEE
Confidence 233334444446777765
No 104
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=68.34 E-value=21 Score=31.18 Aligned_cols=88 Identities=17% Similarity=0.163 Sum_probs=40.9
Q ss_pred CceEEeC--CCCCeEecCCCCCCCccceeeEEEeCCEEEEEeccCCCCCCcccccccCceEEEEcCCCceEEeccCCCcc
Q 024009 153 DDVYMLD--DEMKWKVLPSMPKPDSHIEFAWVLVNNSIVIVGGTTEKHPTTKKMVLVGEIFQFNLNTLKWHVIGKLPYRV 230 (274)
Q Consensus 153 ~~~~~~d--~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~i~~yd~~~~~W~~~~~~p~~~ 230 (274)
..+|..+ .++.|..-..++....+|+. .+.-+..|+..+...+... -.|..||+++..=+.+.++| .
T Consensus 216 ~RiW~i~~dg~~~~~v~~~~~~e~~gHEf-w~~DG~~i~y~~~~~~~~~--------~~i~~~d~~t~~~~~~~~~p--~ 284 (386)
T PF14583_consen 216 QRIWTINTDGSNVKKVHRRMEGESVGHEF-WVPDGSTIWYDSYTPGGQD--------FWIAGYDPDTGERRRLMEMP--W 284 (386)
T ss_dssp -SEEEEETTS---EESS---TTEEEEEEE-E-TTSS-EEEEEEETTT----------EEEEEE-TTT--EEEEEEE---S
T ss_pred eEEEEEEcCCCcceeeecCCCCccccccc-ccCCCCEEEEEeecCCCCc--------eEEEeeCCCCCCceEEEeCC--c
Confidence 3577777 34444444444333333222 2223445555554443322 16889999988655555555 4
Q ss_pred ceeeeEEEcCEEEEEccccCC
Q 024009 231 KTTLAGYWNGWLYFTSGQRDK 251 (274)
Q Consensus 231 ~~~~~~~~~~~l~~~GG~~~~ 251 (274)
..|-....+++|++-=|...+
T Consensus 285 ~~H~~ss~Dg~L~vGDG~d~p 305 (386)
T PF14583_consen 285 CSHFMSSPDGKLFVGDGGDAP 305 (386)
T ss_dssp EEEEEE-TTSSEEEEEE----
T ss_pred eeeeEEcCCCCEEEecCCCCC
Confidence 778888889999988776543
No 105
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=67.25 E-value=67 Score=26.08 Aligned_cols=13 Identities=31% Similarity=0.217 Sum_probs=9.3
Q ss_pred CeeEEEECCCCCe
Q 024009 35 AHTFVLDTETKKW 47 (274)
Q Consensus 35 ~~~~~~d~~~~~W 47 (274)
..+.++|+.+++-
T Consensus 11 ~~v~~~d~~t~~~ 23 (300)
T TIGR03866 11 NTISVIDTATLEV 23 (300)
T ss_pred CEEEEEECCCCce
Confidence 4678888887653
No 106
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=66.49 E-value=84 Score=26.95 Aligned_cols=66 Identities=15% Similarity=0.118 Sum_probs=35.3
Q ss_pred eeEEEECCCCCeeeCCCCCCCCCCceEEE--ECCeEEEEcCCCCCCCCCCccceEeeeecCCCCCCceeeccCCC
Q 024009 36 HTFVLDTETKKWQDLPPLPVPRYAPATQL--WRGRLHVMGGSGENRYTPEVDHWSLAVKDGKPLEKEWRTEIPIP 108 (274)
Q Consensus 36 ~~~~~d~~~~~W~~~~~~~~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p 108 (274)
.++.||..+.+++.+......-.-.-++. -++.||+..... .....+..|.. +..+.+.+.+...+
T Consensus 16 ~~~~~d~~~g~l~~~~~~~~~~~Ps~l~~~~~~~~LY~~~e~~--~~~g~v~~~~i-----~~~~g~L~~~~~~~ 83 (345)
T PF10282_consen 16 YVFRFDEETGTLTLVQTVAEGENPSWLAVSPDGRRLYVVNEGS--GDSGGVSSYRI-----DPDTGTLTLLNSVP 83 (345)
T ss_dssp EEEEEETTTTEEEEEEEEEESSSECCEEE-TTSSEEEEEETTS--STTTEEEEEEE-----ETTTTEEEEEEEEE
T ss_pred EEEEEcCCCCCceEeeeecCCCCCceEEEEeCCCEEEEEEccc--cCCCCEEEEEE-----CCCcceeEEeeeec
Confidence 45677789999988765433322233333 256788875432 11233444442 23335666655544
No 107
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=64.82 E-value=75 Score=25.78 Aligned_cols=11 Identities=18% Similarity=0.214 Sum_probs=8.4
Q ss_pred ceEEEEcCCCc
Q 024009 209 EIFQFNLNTLK 219 (274)
Q Consensus 209 ~i~~yd~~~~~ 219 (274)
.+..||+.+.+
T Consensus 96 ~l~~~d~~~~~ 106 (300)
T TIGR03866 96 LVTVIDIETRK 106 (300)
T ss_pred eEEEEECCCCe
Confidence 68888887754
No 108
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=64.55 E-value=88 Score=26.49 Aligned_cols=177 Identities=13% Similarity=0.224 Sum_probs=74.3
Q ss_pred eEEeCCEEEEEcCcCCCCCCCCCCeeEEEECCCCCeeeCC-CCCCCCCCceEEEE-CCeEEEEcCCCCCCCCCCccceEe
Q 024009 12 MVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLP-PLPVPRYAPATQLW-RGRLHVMGGSGENRYTPEVDHWSL 89 (274)
Q Consensus 12 ~~~~~~~iyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~-~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~~ 89 (274)
+...++..|++|-. .-+..-.-...+|++++ +.+.+-..+.+... ++.+.++|... .+|..
T Consensus 67 I~f~~~~g~ivG~~---------g~ll~T~DgG~tW~~v~l~~~lpgs~~~i~~l~~~~~~l~~~~G--------~iy~T 129 (302)
T PF14870_consen 67 ISFDGNEGWIVGEP---------GLLLHTTDGGKTWERVPLSSKLPGSPFGITALGDGSAELAGDRG--------AIYRT 129 (302)
T ss_dssp EEEETTEEEEEEET---------TEEEEESSTTSS-EE----TT-SS-EEEEEEEETTEEEEEETT----------EEEE
T ss_pred EEecCCceEEEcCC---------ceEEEecCCCCCcEEeecCCCCCCCeeEEEEcCCCcEEEEcCCC--------cEEEe
Confidence 34457788887631 22334444567899986 22333344444544 55677776432 22332
Q ss_pred eeecCCCCCCceeeccCCCCCCCcceeEEeCCEEEEEccCCCCCCCCCCCCccccccCceeecCceE-EeC-CCCCeEec
Q 024009 90 AVKDGKPLEKEWRTEIPIPRGGPHRACVVVDDRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYDDVY-MLD-DEMKWKVL 167 (274)
Q Consensus 90 ~~~~~d~~~~~W~~~~~~p~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~d-~~~~W~~~ 167 (274)
.-.-.+|+.+..-...........-+++++.++-.. .+| ..+ ....|+..
T Consensus 130 -----~DgG~tW~~~~~~~~gs~~~~~r~~dG~~vavs~~G-----------------------~~~~s~~~G~~~w~~~ 181 (302)
T PF14870_consen 130 -----TDGGKTWQAVVSETSGSINDITRSSDGRYVAVSSRG-----------------------NFYSSWDPGQTTWQPH 181 (302)
T ss_dssp -----SSTTSSEEEEE-S----EEEEEE-TTS-EEEEETTS-----------------------SEEEEE-TT-SS-EEE
T ss_pred -----CCCCCCeeEcccCCcceeEeEEECCCCcEEEEECcc-----------------------cEEEEecCCCccceEE
Confidence 124668988665444332222223455655555322 233 223 44568877
Q ss_pred CCCCCCCccceeeEEEeCCEEEEEeccCCCCCCcccccccCceEEEE--cCCCceEEeccCCCccce---eeeEEE-cCE
Q 024009 168 PSMPKPDSHIEFAWVLVNNSIVIVGGTTEKHPTTKKMVLVGEIFQFN--LNTLKWHVIGKLPYRVKT---TLAGYW-NGW 241 (274)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~i~~yd--~~~~~W~~~~~~p~~~~~---~~~~~~-~~~ 241 (274)
......|-. .....-++.|+++. ..+ .+.+=+ ....+|.+. ..|..... ..++.. +++
T Consensus 182 ~r~~~~riq--~~gf~~~~~lw~~~-~Gg------------~~~~s~~~~~~~~w~~~-~~~~~~~~~~~ld~a~~~~~~ 245 (302)
T PF14870_consen 182 NRNSSRRIQ--SMGFSPDGNLWMLA-RGG------------QIQFSDDPDDGETWSEP-IIPIKTNGYGILDLAYRPPNE 245 (302)
T ss_dssp E--SSS-EE--EEEE-TTS-EEEEE-TTT------------EEEEEE-TTEEEEE----B-TTSS--S-EEEEEESSSS-
T ss_pred ccCccceeh--hceecCCCCEEEEe-CCc------------EEEEccCCCCccccccc-cCCcccCceeeEEEEecCCCC
Confidence 755443322 22234567787765 211 344444 345578762 23332222 223333 589
Q ss_pred EEEEcccc
Q 024009 242 LYFTSGQR 249 (274)
Q Consensus 242 l~~~GG~~ 249 (274)
+++.||..
T Consensus 246 ~wa~gg~G 253 (302)
T PF14870_consen 246 IWAVGGSG 253 (302)
T ss_dssp EEEEESTT
T ss_pred EEEEeCCc
Confidence 99988853
No 109
>PRK01742 tolB translocation protein TolB; Provisional
Probab=64.41 E-value=1e+02 Score=27.31 Aligned_cols=15 Identities=13% Similarity=0.224 Sum_probs=12.0
Q ss_pred ceEEEEcCCCceEEe
Q 024009 209 EIFQFNLNTLKWHVI 223 (274)
Q Consensus 209 ~i~~yd~~~~~W~~~ 223 (274)
.++.+|+.+.+++.+
T Consensus 354 ~i~~~Dl~~g~~~~l 368 (429)
T PRK01742 354 NVVKQDLTSGSTEVL 368 (429)
T ss_pred CEEEEECCCCCeEEe
Confidence 577789998888765
No 110
>PRK02889 tolB translocation protein TolB; Provisional
Probab=63.88 E-value=1.1e+02 Score=27.25 Aligned_cols=59 Identities=8% Similarity=0.097 Sum_probs=29.8
Q ss_pred CceEEeC-CCCCeEecCCCCCCCccceeeEEEeCCEEEEEeccCCCCCCcccccccCceEEEEcCCCceEEe
Q 024009 153 DDVYMLD-DEMKWKVLPSMPKPDSHIEFAWVLVNNSIVIVGGTTEKHPTTKKMVLVGEIFQFNLNTLKWHVI 223 (274)
Q Consensus 153 ~~~~~~d-~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~i~~yd~~~~~W~~~ 223 (274)
.++|.+| .....+.+......... .. -.-+++.+++....... ..+|.+|+.+.+.+++
T Consensus 264 ~~Iy~~d~~~~~~~~lt~~~~~~~~--~~-wSpDG~~l~f~s~~~g~---------~~Iy~~~~~~g~~~~l 323 (427)
T PRK02889 264 SQIYTVNADGSGLRRLTQSSGIDTE--PF-FSPDGRSIYFTSDRGGA---------PQIYRMPASGGAAQRV 323 (427)
T ss_pred ceEEEEECCCCCcEECCCCCCCCcC--eE-EcCCCCEEEEEecCCCC---------cEEEEEECCCCceEEE
Confidence 5788887 55555555432211111 22 23344433333221111 2788899888777665
No 111
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=63.83 E-value=88 Score=26.27 Aligned_cols=38 Identities=8% Similarity=0.027 Sum_probs=27.0
Q ss_pred CCCCCCcCceeeEEeCCEEEEEcCcCCCCCCCCCCeeEEEECCCCC
Q 024009 1 MPREMAHSHLGMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTETKK 46 (274)
Q Consensus 1 ~p~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~d~~~~~ 46 (274)
+|+|+..-..++....+++...||.+ +.+-+|+..+..
T Consensus 93 ipl~s~WVMtCA~sPSg~~VAcGGLd--------N~Csiy~ls~~d 130 (343)
T KOG0286|consen 93 IPLPSSWVMTCAYSPSGNFVACGGLD--------NKCSIYPLSTRD 130 (343)
T ss_pred EecCceeEEEEEECCCCCeEEecCcC--------ceeEEEeccccc
Confidence 57777777777777778888888863 456678877653
No 112
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=62.04 E-value=87 Score=25.63 Aligned_cols=68 Identities=15% Similarity=0.207 Sum_probs=39.1
Q ss_pred CCcCceeeEE-eCCEEEEEcCcCCCCCCCCCCeeEEEECCCCCeeeCCCCCCCCCCceEEEE--CCeEEEEcCCCCCCCC
Q 024009 5 MAHSHLGMVT-DGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLPVPRYAPATQLW--RGRLHVMGGSGENRYT 81 (274)
Q Consensus 5 ~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~ 81 (274)
+|-.++..+. ..|.|+..||- ..++..|.++++-++.-. -..-+-|+++.- +++| +.|+.+
T Consensus 114 vPeINam~ldP~enSi~~AgGD---------~~~y~~dlE~G~i~r~~r-GHtDYvH~vv~R~~~~qi-lsG~ED----- 177 (325)
T KOG0649|consen 114 VPEINAMWLDPSENSILFAGGD---------GVIYQVDLEDGRIQREYR-GHTDYVHSVVGRNANGQI-LSGAED----- 177 (325)
T ss_pred CCccceeEeccCCCcEEEecCC---------eEEEEEEecCCEEEEEEc-CCcceeeeeeecccCcce-eecCCC-----
Confidence 3444444444 47888888872 457889999988766532 123345666553 3333 345443
Q ss_pred CCccceE
Q 024009 82 PEVDHWS 88 (274)
Q Consensus 82 ~~~~~~~ 88 (274)
.++.+|+
T Consensus 178 GtvRvWd 184 (325)
T KOG0649|consen 178 GTVRVWD 184 (325)
T ss_pred ccEEEEe
Confidence 4566666
No 113
>PF13859 BNR_3: BNR repeat-like domain; PDB: 3B69_A.
Probab=61.58 E-value=1e+02 Score=26.24 Aligned_cols=186 Identities=17% Similarity=0.265 Sum_probs=77.7
Q ss_pred eeeEEeCCEEEEEcCcCCCCCCCCCCeeEEEE--CCCCCeeeCCCCCCCCCCceEEEECCeEEEEcC-CC-----C----
Q 024009 10 LGMVTDGRYIYVVTGQYGPQCRGPTAHTFVLD--TETKKWQDLPPLPVPRYAPATQLWRGRLHVMGG-SG-----E---- 77 (274)
Q Consensus 10 ~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~d--~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG-~~-----~---- 77 (274)
-.+++-+++||++-|....+.....-.+..+- -...+|.....++....... +.++-|| .. +
T Consensus 63 PTtvvkgn~IymLvG~y~~~~~~~~~~llLvks~~~g~~W~~~~~l~~~~~~~~------~~figgGGSGV~m~dGTLVF 136 (310)
T PF13859_consen 63 PTTVVKGNKIYMLVGSYSRSAGADDWGLLLVKSTDGGIKWGDTKSLPSTSFQSW------KQFIGGGGSGVVMEDGTLVF 136 (310)
T ss_dssp EEEEEETTEEEEEEEEESS--SSTTEEEEEEEEESSSSEE---EE-GGGS-EEE------EEEEE-SEE-EE-TTS-EEE
T ss_pred eeeeecceeEEEEEEEEeccccccccceeeeeccCCcceeeecccCCchhcccc------ceeecCCCCceEEcCCCEEE
Confidence 34667799999998876543211122333332 22236988766553322100 0122222 10 0
Q ss_pred --CCCCCCcc-ceEeeeecCCCCCCceeeccCCCCCCCc-ceeEEe-CCEEEEEccCCCCCCCCCCCCccccccCceeec
Q 024009 78 --NRYTPEVD-HWSLAVKDGKPLEKEWRTEIPIPRGGPH-RACVVV-DDRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVY 152 (274)
Q Consensus 78 --~~~~~~~~-~~~~~~~~~d~~~~~W~~~~~~p~~~~~-~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~ 152 (274)
......-+ .++..+|.-| ...+|.....++...|. ++++.+ +++|.++.-.+.. .
T Consensus 137 Pv~a~~~~~~~~~SlIiYS~d-~g~~W~lskg~s~~gC~~psv~EWe~gkLlM~~~c~~g-------------------~ 196 (310)
T PF13859_consen 137 PVQATKKNGDGTVSLIIYSTD-DGKTWKLSKGMSPAGCSDPSVVEWEDGKLLMMTACDDG-------------------R 196 (310)
T ss_dssp EEEEEETT---EEEEEEEESS-TTSS-EE-S----TT-EEEEEEEE-TTEEEEEEE-TTS--------------------
T ss_pred EEeeeccCccceEEEEEEECC-CccceEeccccCCCCcceEEEEeccCCeeEEEEecccc-------------------e
Confidence 00001122 4677777643 36789987777655544 566777 7899988654432 2
Q ss_pred CceEEeC-CCCCeEe-cCCCCCC------CccceeeE---EEeC-CEEEEEecc--CCCCCCcccccccCceEEEEcCCC
Q 024009 153 DDVYMLD-DEMKWKV-LPSMPKP------DSHIEFAW---VLVN-NSIVIVGGT--TEKHPTTKKMVLVGEIFQFNLNTL 218 (274)
Q Consensus 153 ~~~~~~d-~~~~W~~-~~~~~~~------~~~~~~~~---~~~~-~~l~v~GG~--~~~~~~~~~~~~~~~i~~yd~~~~ 218 (274)
..+|.-. .-.+|+. +..++.. +......+ +.++ .+++++--. ..... . --+.++.+=..++
T Consensus 197 rrVYeS~DmG~tWtea~gtlsrVw~ns~~~~~~~v~~~~ta~iegr~VmL~T~~~y~~~~~-~----~~~~L~LWlTDn~ 271 (310)
T PF13859_consen 197 RRVYESGDMGTTWTEALGTLSRVWGNSQGVQGGFVTAGITATIEGRKVMLYTQPVYSSGNE-K----EKGRLHLWLTDNN 271 (310)
T ss_dssp --EEEESSTTSS-EE-TTTTTT---SST-----EEEE----EETTEEEEEEEEE---SS-T------T-B-EEEEEESSS
T ss_pred EEEEEEcccceehhhccCccceeeccccccCccceeeeeeeccCCcEEEEEEEeeccccCc-c----ccceeEEEeCCCc
Confidence 3566654 6678987 4455432 11111222 3444 456665432 22211 0 1235666656666
Q ss_pred ceEEeccC
Q 024009 219 KWHVIGKL 226 (274)
Q Consensus 219 ~W~~~~~~ 226 (274)
.-..++++
T Consensus 272 r~~~vGpv 279 (310)
T PF13859_consen 272 RIFDVGPV 279 (310)
T ss_dssp -EEEEEE-
T ss_pred EEEEEecc
Confidence 66666665
No 114
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=61.10 E-value=92 Score=25.60 Aligned_cols=55 Identities=18% Similarity=0.279 Sum_probs=32.9
Q ss_pred EEeCCEEEEEeccCCCCCCcccccccCceEEEEcCCCceEEeccCCCccceeeeEE---EcCEEEEEccccC
Q 024009 182 VLVNNSIVIVGGTTEKHPTTKKMVLVGEIFQFNLNTLKWHVIGKLPYRVKTTLAGY---WNGWLYFTSGQRD 250 (274)
Q Consensus 182 ~~~~~~l~v~GG~~~~~~~~~~~~~~~~i~~yd~~~~~W~~~~~~p~~~~~~~~~~---~~~~l~~~GG~~~ 250 (274)
..-+..+||.||... .+++||-.++. ++........++..++ -+|++|..|.+++
T Consensus 232 L~P~k~~fVaGged~------------~~~kfDy~Tge--Ei~~~nkgh~gpVhcVrFSPdGE~yAsGSEDG 289 (334)
T KOG0278|consen 232 LHPKKEFFVAGGEDF------------KVYKFDYNTGE--EIGSYNKGHFGPVHCVRFSPDGELYASGSEDG 289 (334)
T ss_pred ccCCCceEEecCcce------------EEEEEeccCCc--eeeecccCCCCceEEEEECCCCceeeccCCCc
Confidence 334568999998643 68888887774 3322222222222222 2799999987654
No 115
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=59.38 E-value=1.4e+02 Score=27.13 Aligned_cols=28 Identities=21% Similarity=0.192 Sum_probs=16.6
Q ss_pred eeeccCCCCCCCcceeEEeCCEEEEEccCC
Q 024009 101 WRTEIPIPRGGPHRACVVVDDRLLVIGGQE 130 (274)
Q Consensus 101 W~~~~~~p~~~~~~~~~~~~~~iyv~GG~~ 130 (274)
|.+....|.... ..+..+..|++-=|++
T Consensus 203 ~~~~HsAP~~gi--cfspsne~l~vsVG~D 230 (673)
T KOG4378|consen 203 ASEAHSAPCRGI--CFSPSNEALLVSVGYD 230 (673)
T ss_pred hhhhccCCcCcc--eecCCccceEEEeccc
Confidence 444444454432 4556677788877765
No 116
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=57.79 E-value=1.3e+02 Score=26.31 Aligned_cols=110 Identities=14% Similarity=0.049 Sum_probs=54.4
Q ss_pred CCCeeeCCCCCCCCCCceEEEECCeEEEEcCCCCCCCCCCccceEeeeecCCCCCCceeeccC-----C--CCCCCccee
Q 024009 44 TKKWQDLPPLPVPRYAPATQLWRGRLHVMGGSGENRYTPEVDHWSLAVKDGKPLEKEWRTEIP-----I--PRGGPHRAC 116 (274)
Q Consensus 44 ~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~-----~--p~~~~~~~~ 116 (274)
.+.|+.+.. .....-.++.++|++|++.-. ..+..++. +. +-..+.+ + .........
T Consensus 189 ~~~Wt~l~~--~~~~~~DIi~~kGkfYAvD~~------G~l~~i~~-----~l---~i~~v~~~i~~~~~~g~~~~~~yL 252 (373)
T PLN03215 189 GNVLKALKQ--MGYHFSDIIVHKGQTYALDSI------GIVYWINS-----DL---EFSRFGTSLDENITDGCWTGDRRF 252 (373)
T ss_pred CCeeeEccC--CCceeeEEEEECCEEEEEcCC------CeEEEEec-----CC---ceeeecceecccccCCcccCceeE
Confidence 489999964 334466777889999998321 11121111 11 1111111 1 111112345
Q ss_pred EEeCCEEEEEccCCCCCCCCCCCCccccccCceeecCceEEeC-CCCCeEecCCCCC
Q 024009 117 VVVDDRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYDDVYMLD-DEMKWKVLPSMPK 172 (274)
Q Consensus 117 ~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d-~~~~W~~~~~~~~ 172 (274)
+...|+|+++.........+.... .........-++|..| +..+|..+..+..
T Consensus 253 VEs~GdLLmV~R~~~~~~~~~~~~---~~~~~~t~~f~VfklD~~~~~WveV~sLgd 306 (373)
T PLN03215 253 VECCGELYIVERLPKESTWKRKAD---GFEYSRTVGFKVYKFDDELAKWMEVKTLGD 306 (373)
T ss_pred EEECCEEEEEEEEccCcccccccc---cccccceeEEEEEEEcCCCCcEEEecccCC
Confidence 667788999976432110000000 0001112234678888 7789999987753
No 117
>PF13088 BNR_2: BNR repeat-like domain; PDB: 2F11_A 2F0Z_A 1VCU_B 2F25_B 1SO7_A 2F29_A 1SNT_A 2F13_A 2F28_A 2F27_A ....
Probab=57.19 E-value=1.1e+02 Score=25.02 Aligned_cols=194 Identities=21% Similarity=0.272 Sum_probs=90.9
Q ss_pred CCEEEEEc--CcCCCCCCCCCCeeEEEECC-CCCeeeCCCCCCC------CCCc--eEEEECCeEEEEcCCCCCCCCCCc
Q 024009 16 GRYIYVVT--GQYGPQCRGPTAHTFVLDTE-TKKWQDLPPLPVP------RYAP--ATQLWRGRLHVMGGSGENRYTPEV 84 (274)
Q Consensus 16 ~~~iyv~G--G~~~~~~~~~~~~~~~~d~~-~~~W~~~~~~~~~------r~~~--~~~~~~~~iyv~GG~~~~~~~~~~ 84 (274)
+++|+++- +...... ....-.+..... ..+|+....++.. .... .+...++++++.. +.. ..
T Consensus 58 ~g~l~l~~~~~~~~~~~-~~~~~~~~~S~D~G~TWs~~~~l~~~~~~~~~~~~~~~~i~~~~G~l~~~~-~~~-----~~ 130 (275)
T PF13088_consen 58 DGRLWLFYSAGSSGGGW-SGSRIYYSRSTDGGKTWSEPTDLPPGWFGNFSGPGRGPPIQLPDGRLIAPY-YHE-----SG 130 (275)
T ss_dssp TSEEEEEEEEEETTESC-CTCEEEEEEESSTTSS-EEEEEEHHHCCCSCEECSEEEEEEECTTEEEEEE-EEE-----SS
T ss_pred CCCEEEEEEEccCCCCC-CceeEEEEEECCCCCCCCCccccccccccceeccceeeeeEecCCCEEEEE-eec-----cc
Confidence 88998885 2222111 111211244444 4589887543321 1111 2333477888762 111 11
Q ss_pred cceEeeeecCCCCCCceeeccCCCCC-C-CcceeEE-eCCEEEEEccCCCCCCCCCCCCccccccCceeecCceEEe--C
Q 024009 85 DHWSLAVKDGKPLEKEWRTEIPIPRG-G-PHRACVV-VDDRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYDDVYML--D 159 (274)
Q Consensus 85 ~~~~~~~~~~d~~~~~W~~~~~~p~~-~-~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--d 159 (274)
..+...++.-+-...+|+.....+.. . +..+++. -+++|+++--.... . ...+.. |
T Consensus 131 ~~~~~~~~~S~D~G~tW~~~~~~~~~~~~~e~~~~~~~dG~l~~~~R~~~~---------------~----~~~~~~S~D 191 (275)
T PF13088_consen 131 GSFSAFVYYSDDGGKTWSSGSPIPDGQGECEPSIVELPDGRLLAVFRTEGN---------------D----DIYISRSTD 191 (275)
T ss_dssp CEEEEEEEEESSTTSSEEEEEECECSEEEEEEEEEEETTSEEEEEEEECSS---------------T----EEEEEEESS
T ss_pred cCcceEEEEeCCCCceeeccccccccCCcceeEEEECCCCcEEEEEEccCC---------------C----cEEEEEECC
Confidence 11222222223467789887766422 2 2223332 36688887543211 0 112222 2
Q ss_pred CCCCeEecC--CCCCCCccceeeEEE-eCCEEEEEeccCCCCCCcccccccCceEEEEcCCCceEEeccCCCcc----ce
Q 024009 160 DEMKWKVLP--SMPKPDSHIEFAWVL-VNNSIVIVGGTTEKHPTTKKMVLVGEIFQFNLNTLKWHVIGKLPYRV----KT 232 (274)
Q Consensus 160 ~~~~W~~~~--~~~~~~~~~~~~~~~-~~~~l~v~GG~~~~~~~~~~~~~~~~i~~yd~~~~~W~~~~~~p~~~----~~ 232 (274)
.-.+|+... .+|.+... ..++. .+++++++........ .-.++.-.-...+|.....+.... ..
T Consensus 192 ~G~TWs~~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~~~~r~-------~l~l~~S~D~g~tW~~~~~i~~~~~~~~~Y 262 (275)
T PF13088_consen 192 GGRTWSPPQPTNLPNPNSS--ISLVRLSDGRLLLVYNNPDGRS-------NLSLYVSEDGGKTWSRPKTIDDGPNGDSGY 262 (275)
T ss_dssp TTSS-EEEEEEECSSCCEE--EEEEECTTSEEEEEEECSSTSE-------EEEEEEECTTCEEEEEEEEEEEEE-CCEEE
T ss_pred CCCcCCCceecccCcccCC--ceEEEcCCCCEEEEEECCCCCC-------ceEEEEEeCCCCcCCccEEEeCCCCCcEEC
Confidence 556898765 44554433 22233 4578888876211110 113333333477898765554333 45
Q ss_pred eeeEEEc-CEEEE
Q 024009 233 TLAGYWN-GWLYF 244 (274)
Q Consensus 233 ~~~~~~~-~~l~~ 244 (274)
..+++.+ ++|||
T Consensus 263 ~~~~~~~dg~l~i 275 (275)
T PF13088_consen 263 PSLTQLPDGKLYI 275 (275)
T ss_dssp EEEEEEETTEEEE
T ss_pred CeeEEeCCCcCCC
Confidence 6777774 69886
No 118
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=56.96 E-value=1.5e+02 Score=26.66 Aligned_cols=51 Identities=12% Similarity=0.178 Sum_probs=28.3
Q ss_pred CCEEEEEeccCCCCCCcccccccCceEEEEcCCCceEEecc--CCCccceeeeEEEcCEEEEEccccC
Q 024009 185 NNSIVIVGGTTEKHPTTKKMVLVGEIFQFNLNTLKWHVIGK--LPYRVKTTLAGYWNGWLYFTSGQRD 250 (274)
Q Consensus 185 ~~~l~v~GG~~~~~~~~~~~~~~~~i~~yd~~~~~W~~~~~--~p~~~~~~~~~~~~~~l~~~GG~~~ 250 (274)
+++-++.||... .+-+|| +..|+.+-. .|.|.-+.++.- ++.-.++|..++
T Consensus 249 ~~~rLlS~sLD~------------~VKVfd--~t~~Kvv~s~~~~~pvLsiavs~-dd~t~viGmsnG 301 (487)
T KOG0310|consen 249 DSTRLLSGSLDR------------HVKVFD--TTNYKVVHSWKYPGPVLSIAVSP-DDQTVVIGMSNG 301 (487)
T ss_pred CCceEeeccccc------------ceEEEE--ccceEEEEeeecccceeeEEecC-CCceEEEecccc
Confidence 456667776544 577888 345666544 344443333332 556666666544
No 119
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=56.57 E-value=1.4e+02 Score=26.21 Aligned_cols=152 Identities=15% Similarity=0.186 Sum_probs=70.3
Q ss_pred CeeEEEECCCC-----CeeeCCCCCCCCCCceEEEECCeEEEEcCCCCCCCCCCccceEeeeecCCCCCCceee-ccCCC
Q 024009 35 AHTFVLDTETK-----KWQDLPPLPVPRYAPATQLWRGRLHVMGGSGENRYTPEVDHWSLAVKDGKPLEKEWRT-EIPIP 108 (274)
Q Consensus 35 ~~~~~~d~~~~-----~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~d~~~~~W~~-~~~~p 108 (274)
+.++..|.... .|..+.+ ...-....+...++.+|+.-...... . .++..++-. +....|.. +.+..
T Consensus 252 s~v~~~d~~~~~~~~~~~~~l~~-~~~~~~~~v~~~~~~~yi~Tn~~a~~--~--~l~~~~l~~--~~~~~~~~~l~~~~ 324 (414)
T PF02897_consen 252 SEVYLLDLDDGGSPDAKPKLLSP-REDGVEYYVDHHGDRLYILTNDDAPN--G--RLVAVDLAD--PSPAEWWTVLIPED 324 (414)
T ss_dssp EEEEEEECCCTTTSS-SEEEEEE-SSSS-EEEEEEETTEEEEEE-TT-TT-----EEEEEETTS--TSGGGEEEEEE--S
T ss_pred CeEEEEeccccCCCcCCcEEEeC-CCCceEEEEEccCCEEEEeeCCCCCC--c--EEEEecccc--cccccceeEEcCCC
Confidence 78999999875 6777754 11122233334588899876532221 1 111111111 22224663 33322
Q ss_pred CCCCcceeEEeCCEEEEEccCCCCCCCCCCCCccccccCceeecCceEEeCCCCCeEec-CCCCCCCccceeeEEEeCCE
Q 024009 109 RGGPHRACVVVDDRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYDDVYMLDDEMKWKVL-PSMPKPDSHIEFAWVLVNNS 187 (274)
Q Consensus 109 ~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~W~~~-~~~~~~~~~~~~~~~~~~~~ 187 (274)
....-..+...++.|++.-=.+. ...+..++....|... .++|..-.-.+.......+.
T Consensus 325 ~~~~l~~~~~~~~~Lvl~~~~~~--------------------~~~l~v~~~~~~~~~~~~~~p~~g~v~~~~~~~~~~~ 384 (414)
T PF02897_consen 325 EDVSLEDVSLFKDYLVLSYRENG--------------------SSRLRVYDLDDGKESREIPLPEAGSVSGVSGDFDSDE 384 (414)
T ss_dssp SSEEEEEEEEETTEEEEEEEETT--------------------EEEEEEEETT-TEEEEEEESSSSSEEEEEES-TT-SE
T ss_pred CceeEEEEEEECCEEEEEEEECC--------------------ccEEEEEECCCCcEEeeecCCcceEEeccCCCCCCCE
Confidence 22122345567888777643222 2467777633233322 23443221100110111344
Q ss_pred EEE-EeccCCCCCCcccccccCceEEEEcCCCceEEe
Q 024009 188 IVI-VGGTTEKHPTTKKMVLVGEIFQFNLNTLKWHVI 223 (274)
Q Consensus 188 l~v-~GG~~~~~~~~~~~~~~~~i~~yd~~~~~W~~~ 223 (274)
+++ +.+... -..++.||+.+++.+.+
T Consensus 385 ~~~~~ss~~~----------P~~~y~~d~~t~~~~~~ 411 (414)
T PF02897_consen 385 LRFSYSSFTT----------PPTVYRYDLATGELTLL 411 (414)
T ss_dssp EEEEEEETTE----------EEEEEEEETTTTCEEEE
T ss_pred EEEEEeCCCC----------CCEEEEEECCCCCEEEE
Confidence 444 333322 23899999999987765
No 120
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=54.33 E-value=1.1e+02 Score=24.47 Aligned_cols=105 Identities=13% Similarity=0.024 Sum_probs=63.4
Q ss_pred CCCcCceeeEEeCCEEEEEcCcCCCCCCCCCCeeEEEECCCCCeeeCCCCC-CCCCCceEEEECCeEEEEcCCCCCCCCC
Q 024009 4 EMAHSHLGMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLP-VPRYAPATQLWRGRLHVMGGSGENRYTP 82 (274)
Q Consensus 4 ~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~~-~~r~~~~~~~~~~~iyv~GG~~~~~~~~ 82 (274)
...-+..+...+++.+|.--|..+ .+++.++|..+.+=..-.+++ ..-++-..+.+++.+|..-=..+..
T Consensus 43 Ds~sfTQGL~~~~g~i~esTG~yg------~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egva--- 113 (262)
T COG3823 43 DSTSFTQGLEYLDGHILESTGLYG------FSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVA--- 113 (262)
T ss_pred chhhhhcceeeeCCEEEEeccccc------cceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEecccee---
Confidence 333455667788888888888654 477889999977633333333 3345667777788888875322111
Q ss_pred CccceEeeeecCCCCCCceeeccCCCCCCCcceeEEeCCEEEEEcc
Q 024009 83 EVDHWSLAVKDGKPLEKEWRTEIPIPRGGPHRACVVVDDRLLVIGG 128 (274)
Q Consensus 83 ~~~~~~~~~~~~d~~~~~W~~~~~~p~~~~~~~~~~~~~~iyv~GG 128 (274)
-+|+ .++...+...+-...+-+.+.-+..|.+.-|
T Consensus 114 --f~~d---------~~t~~~lg~~~y~GeGWgLt~d~~~LimsdG 148 (262)
T COG3823 114 --FKYD---------ADTLEELGRFSYEGEGWGLTSDDKNLIMSDG 148 (262)
T ss_pred --EEEC---------hHHhhhhcccccCCcceeeecCCcceEeeCC
Confidence 1111 2333445555555555567777777777666
No 121
>PRK10115 protease 2; Provisional
Probab=53.19 E-value=2.1e+02 Score=27.37 Aligned_cols=17 Identities=18% Similarity=0.474 Sum_probs=14.2
Q ss_pred CceEEEEcCCCceEEec
Q 024009 208 GEIFQFNLNTLKWHVIG 224 (274)
Q Consensus 208 ~~i~~yd~~~~~W~~~~ 224 (274)
.+++.||+.+.+|+.+.
T Consensus 386 ~~~y~~d~~~~~~~~l~ 402 (686)
T PRK10115 386 DTLFELDMDTGERRVLK 402 (686)
T ss_pred CEEEEEECCCCcEEEEE
Confidence 38999999999888763
No 122
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=52.39 E-value=1.1e+02 Score=23.97 Aligned_cols=172 Identities=25% Similarity=0.326 Sum_probs=89.6
Q ss_pred eEEeCCEEEEEcCcCCCCCCCCCCeeEEEECCCCC--eeeCCCCCCCCCCceEEEECCeEEEEcCCCCCCCCCCccceEe
Q 024009 12 MVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTETKK--WQDLPPLPVPRYAPATQLWRGRLHVMGGSGENRYTPEVDHWSL 89 (274)
Q Consensus 12 ~~~~~~~iyv~GG~~~~~~~~~~~~~~~~d~~~~~--W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~ 89 (274)
.+..++.+|+..+ ...++.+|+.+++ |+.-.+ .+ .....+..++.+|+.... ..+..++
T Consensus 32 ~~~~~~~v~~~~~---------~~~l~~~d~~tG~~~W~~~~~--~~-~~~~~~~~~~~v~v~~~~------~~l~~~d- 92 (238)
T PF13360_consen 32 AVPDGGRVYVASG---------DGNLYALDAKTGKVLWRFDLP--GP-ISGAPVVDGGRVYVGTSD------GSLYALD- 92 (238)
T ss_dssp EEEETTEEEEEET---------TSEEEEEETTTSEEEEEEECS--SC-GGSGEEEETTEEEEEETT------SEEEEEE-
T ss_pred EEEeCCEEEEEcC---------CCEEEEEECCCCCEEEEeecc--cc-ccceeeecccccccccce------eeeEecc-
Confidence 3447888888832 3778999998875 665542 11 112246668888887521 1223333
Q ss_pred eeecCCCCCCcee-eccCCCCC--CCcceeEEeCCEEEEEccCCCCCCCCCCCCccccccCceeecCceEEeC-CCC--C
Q 024009 90 AVKDGKPLEKEWR-TEIPIPRG--GPHRACVVVDDRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYDDVYMLD-DEM--K 163 (274)
Q Consensus 90 ~~~~~d~~~~~W~-~~~~~p~~--~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d-~~~--~ 163 (274)
-...+..|+ .....+.. .........++.+|+... . ..++.+| .+. .
T Consensus 93 ----~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~----------------------g~l~~~d~~tG~~~ 145 (238)
T PF13360_consen 93 ----AKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTS-S----------------------GKLVALDPKTGKLL 145 (238)
T ss_dssp ----TTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEET-C----------------------SEEEEEETTTTEEE
T ss_pred ----cCCcceeeeeccccccccccccccCceEecCEEEEEec-c----------------------CcEEEEecCCCcEE
Confidence 124455688 44332222 222344445667766653 1 3578887 544 5
Q ss_pred eEecCCCCCCCc------cceeeEEEeCCEEEEEeccCCCCCCcccccccCceEEEEcCCCc--eEEeccCCCccceeee
Q 024009 164 WKVLPSMPKPDS------HIEFAWVLVNNSIVIVGGTTEKHPTTKKMVLVGEIFQFNLNTLK--WHVIGKLPYRVKTTLA 235 (274)
Q Consensus 164 W~~~~~~~~~~~------~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~i~~yd~~~~~--W~~~~~~p~~~~~~~~ 235 (274)
|+.-...+.... ......+..++.+|+..+.. .+..+|..+.+ |+.. +.. .....
T Consensus 146 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g-------------~~~~~d~~tg~~~w~~~--~~~--~~~~~ 208 (238)
T PF13360_consen 146 WKYPVGEPRGSSPISSFSDINGSPVISDGRVYVSSGDG-------------RVVAVDLATGEKLWSKP--ISG--IYSLP 208 (238)
T ss_dssp EEEESSTT-SS--EEEETTEEEEEECCTTEEEEECCTS-------------SEEEEETTTTEEEEEEC--SS---ECECE
T ss_pred EEeecCCCCCCcceeeecccccceEEECCEEEEEcCCC-------------eEEEEECCCCCEEEEec--CCC--ccCCc
Confidence 766544433221 11133455567888876431 25566998887 7432 222 11113
Q ss_pred EEEcCEEEEEc
Q 024009 236 GYWNGWLYFTS 246 (274)
Q Consensus 236 ~~~~~~l~~~G 246 (274)
...++.||+..
T Consensus 209 ~~~~~~l~~~~ 219 (238)
T PF13360_consen 209 SVDGGTLYVTS 219 (238)
T ss_dssp ECCCTEEEEEE
T ss_pred eeeCCEEEEEe
Confidence 33466666654
No 123
>PRK03629 tolB translocation protein TolB; Provisional
Probab=50.65 E-value=1.8e+02 Score=25.82 Aligned_cols=59 Identities=8% Similarity=0.110 Sum_probs=31.3
Q ss_pred CceEEeC-CCCCeEecCCCCCCCccceeeEEEeCCEEEEEeccCCCCCCcccccccCceEEEEcCCCceEEe
Q 024009 153 DDVYMLD-DEMKWKVLPSMPKPDSHIEFAWVLVNNSIVIVGGTTEKHPTTKKMVLVGEIFQFNLNTLKWHVI 223 (274)
Q Consensus 153 ~~~~~~d-~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~i~~yd~~~~~W~~~ 223 (274)
.++|.+| .+.+.+.+......... .. -.-+++.+++...... ...+|.+|+.+.+-+++
T Consensus 267 ~~I~~~d~~tg~~~~lt~~~~~~~~--~~-wSPDG~~I~f~s~~~g---------~~~Iy~~d~~~g~~~~l 326 (429)
T PRK03629 267 LNLYVMDLASGQIRQVTDGRSNNTE--PT-WFPDSQNLAYTSDQAG---------RPQVYKVNINGGAPQRI 326 (429)
T ss_pred cEEEEEECCCCCEEEccCCCCCcCc--eE-ECCCCCEEEEEeCCCC---------CceEEEEECCCCCeEEe
Confidence 3588888 66666666544322111 22 2234443333322111 12789999988777665
No 124
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=47.92 E-value=79 Score=29.14 Aligned_cols=68 Identities=13% Similarity=0.174 Sum_probs=39.3
Q ss_pred CCcCceeeEEe--CCEEEEEcCcCCCCCCCCCCeeEEEECCCCCeeeCCCCCCCCCCceEEEE--CCeEEEEcCCCCCCC
Q 024009 5 MAHSHLGMVTD--GRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLPVPRYAPATQLW--RGRLHVMGGSGENRY 80 (274)
Q Consensus 5 ~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~ 80 (274)
+|+.+.-++.. .-.||+.|- -+++|++|+..++|-.- +...-..--++.+ -..|+.+||..
T Consensus 132 IP~~GRDm~y~~~scDly~~gs---------g~evYRlNLEqGrfL~P--~~~~~~~lN~v~in~~hgLla~Gt~~---- 196 (703)
T KOG2321|consen 132 IPKFGRDMKYHKPSCDLYLVGS---------GSEVYRLNLEQGRFLNP--FETDSGELNVVSINEEHGLLACGTED---- 196 (703)
T ss_pred cCcCCccccccCCCccEEEeec---------CcceEEEEccccccccc--cccccccceeeeecCccceEEecccC----
Confidence 45555555544 455777753 37899999999997542 2221222223333 23578888754
Q ss_pred CCCccceE
Q 024009 81 TPEVDHWS 88 (274)
Q Consensus 81 ~~~~~~~~ 88 (274)
..++.|+
T Consensus 197 -g~VEfwD 203 (703)
T KOG2321|consen 197 -GVVEFWD 203 (703)
T ss_pred -ceEEEec
Confidence 4466665
No 125
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=47.23 E-value=1.5e+02 Score=23.81 Aligned_cols=100 Identities=10% Similarity=0.050 Sum_probs=62.0
Q ss_pred eeEEeCCEEEEEccCCCCCCCCCCCCccccccCceeecCceEEeC-CCCCeEecCCCCCCCccceeeEEEeCCEEEEEec
Q 024009 115 ACVVVDDRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYDDVYMLD-DEMKWKVLPSMPKPDSHIEFAWVLVNNSIVIVGG 193 (274)
Q Consensus 115 ~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d-~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~v~GG 193 (274)
+....+++|+..-|..+. ..+..+| .+.+=..-.+++.+ ..++-.++.+++.+|...-
T Consensus 50 GL~~~~g~i~esTG~yg~--------------------S~ir~~~L~~gq~~~s~~l~~~-~~FgEGit~~gd~~y~LTw 108 (262)
T COG3823 50 GLEYLDGHILESTGLYGF--------------------SKIRVSDLTTGQEIFSEKLAPD-TVFGEGITKLGDYFYQLTW 108 (262)
T ss_pred ceeeeCCEEEEecccccc--------------------ceeEEEeccCceEEEEeecCCc-cccccceeeccceEEEEEe
Confidence 455667888888887654 4677777 54432222222222 2223456889999999865
Q ss_pred cCCCCCCcccccccCceEEEEcCCCceEEeccCCCccceeeeEEEcCEEEEEcccc
Q 024009 194 TTEKHPTTKKMVLVGEIFQFNLNTLKWHVIGKLPYRVKTTLAGYWNGWLYFTSGQR 249 (274)
Q Consensus 194 ~~~~~~~~~~~~~~~~i~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~l~~~GG~~ 249 (274)
..+ ..+.||. ++.+.++..+..-.+.+++.-+..|++.-|..
T Consensus 109 ~eg------------vaf~~d~--~t~~~lg~~~y~GeGWgLt~d~~~LimsdGsa 150 (262)
T COG3823 109 KEG------------VAFKYDA--DTLEELGRFSYEGEGWGLTSDDKNLIMSDGSA 150 (262)
T ss_pred ccc------------eeEEECh--HHhhhhcccccCCcceeeecCCcceEeeCCce
Confidence 432 3455654 44566777777777777777777777666643
No 126
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=46.87 E-value=1.8e+02 Score=24.54 Aligned_cols=48 Identities=15% Similarity=0.151 Sum_probs=25.1
Q ss_pred EEEEEcCcCCCCCCCCCCeeEEEECCC-CCeeeCCCCCCCCCCceEEEE-CC-eEEEEc
Q 024009 18 YIYVVTGQYGPQCRGPTAHTFVLDTET-KKWQDLPPLPVPRYAPATQLW-RG-RLHVMG 73 (274)
Q Consensus 18 ~iyv~GG~~~~~~~~~~~~~~~~d~~~-~~W~~~~~~~~~r~~~~~~~~-~~-~iyv~G 73 (274)
++|+.... -..+.+||..+ .+++.+..++.....+.++.. ++ .||+.+
T Consensus 3 ~~y~~~~~--------~~~I~~~~~~~~g~l~~~~~~~~~~~~~~l~~spd~~~lyv~~ 53 (330)
T PRK11028 3 IVYIASPE--------SQQIHVWNLNHEGALTLLQVVDVPGQVQPMVISPDKRHLYVGV 53 (330)
T ss_pred EEEEEcCC--------CCCEEEEEECCCCceeeeeEEecCCCCccEEECCCCCEEEEEE
Confidence 46777432 14566777753 577766555433223333333 34 566654
No 127
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=44.70 E-value=1.7e+02 Score=24.03 Aligned_cols=103 Identities=15% Similarity=0.253 Sum_probs=54.6
Q ss_pred EEEEEcCcCCCCCCCCCCeeEEEECCCCCeeeC----------------CCCCCCCCCceEEEECCeEEEEcCCCCCCCC
Q 024009 18 YIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDL----------------PPLPVPRYAPATQLWRGRLHVMGGSGENRYT 81 (274)
Q Consensus 18 ~iyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~----------------~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~ 81 (274)
+=++-||.+ .+-.+|.||-. +|..- |..-.+++.-+.+.-+++++++--.
T Consensus 176 krlvSgGcD------n~VkiW~~~~~--~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~------ 241 (299)
T KOG1332|consen 176 KRLVSGGCD------NLVKIWKFDSD--SWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKD------ 241 (299)
T ss_pred ceeeccCCc------cceeeeecCCc--chhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEec------
Confidence 346778763 34567777754 66432 1222455555555567777776310
Q ss_pred CCccceEeeeecCCCCCCceee--ccCCCCCCCcceeEEeCCEEEEEccCCCCCCCCCCCCccccccCceeecCceEEeC
Q 024009 82 PEVDHWSLAVKDGKPLEKEWRT--EIPIPRGGPHRACVVVDDRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYDDVYMLD 159 (274)
Q Consensus 82 ~~~~~~~~~~~~~d~~~~~W~~--~~~~p~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 159 (274)
.....|+. +.+.|.+.. +.+...-+.+.-++|.++. -.+|.-+
T Consensus 242 --------------~e~e~wk~tll~~f~~~~w-~vSWS~sGn~LaVs~GdNk--------------------vtlwke~ 286 (299)
T KOG1332|consen 242 --------------EEYEPWKKTLLEEFPDVVW-RVSWSLSGNILAVSGGDNK--------------------VTLWKEN 286 (299)
T ss_pred --------------CccCcccccccccCCcceE-EEEEeccccEEEEecCCcE--------------------EEEEEeC
Confidence 12345544 444555554 3444455554444443322 2345544
Q ss_pred CCCCeEecCC
Q 024009 160 DEMKWKVLPS 169 (274)
Q Consensus 160 ~~~~W~~~~~ 169 (274)
...+|..++.
T Consensus 287 ~~Gkw~~v~~ 296 (299)
T KOG1332|consen 287 VDGKWEEVGE 296 (299)
T ss_pred CCCcEEEccc
Confidence 6789998864
No 128
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=44.57 E-value=1.5e+02 Score=23.12 Aligned_cols=23 Identities=17% Similarity=0.101 Sum_probs=13.5
Q ss_pred CCEEEEEcCcCCCCCCCCCCeeEEEECCCCC
Q 024009 16 GRYIYVVTGQYGPQCRGPTAHTFVLDTETKK 46 (274)
Q Consensus 16 ~~~iyv~GG~~~~~~~~~~~~~~~~d~~~~~ 46 (274)
++.+++.|+. ...+.+||..+++
T Consensus 20 ~~~~l~~~~~--------~g~i~i~~~~~~~ 42 (289)
T cd00200 20 DGKLLATGSG--------DGTIKVWDLETGE 42 (289)
T ss_pred CCCEEEEeec--------CcEEEEEEeeCCC
Confidence 3456666653 2456777777654
No 129
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=41.66 E-value=2e+02 Score=23.72 Aligned_cols=50 Identities=14% Similarity=0.205 Sum_probs=27.1
Q ss_pred CCeeEEEECCCCCeeeCCCCCCCCCCceEEEE--CCeEEEEcCCCCCCCCCCccceE
Q 024009 34 TAHTFVLDTETKKWQDLPPLPVPRYAPATQLW--RGRLHVMGGSGENRYTPEVDHWS 88 (274)
Q Consensus 34 ~~~~~~~d~~~~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~ 88 (274)
...+.+||..++.=..+..+--.+-.-.++-. +++--.-||.+ ..+..|+
T Consensus 60 ~qhvRlyD~~S~np~Pv~t~e~h~kNVtaVgF~~dgrWMyTgseD-----gt~kIWd 111 (311)
T KOG0315|consen 60 NQHVRLYDLNSNNPNPVATFEGHTKNVTAVGFQCDGRWMYTGSED-----GTVKIWD 111 (311)
T ss_pred CCeeEEEEccCCCCCceeEEeccCCceEEEEEeecCeEEEecCCC-----ceEEEEe
Confidence 46788999988763333222222333333332 66766666654 3455555
No 130
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=40.21 E-value=2.3e+02 Score=24.00 Aligned_cols=171 Identities=14% Similarity=0.151 Sum_probs=72.1
Q ss_pred eCCEEEEEcCcCCCCCCCCCCeeEEEECCCCCeeeCCC-CCCC-CCC-ceEEEECCeEEEEcCCCCCCCCCCccceEeee
Q 024009 15 DGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPP-LPVP-RYA-PATQLWRGRLHVMGGSGENRYTPEVDHWSLAV 91 (274)
Q Consensus 15 ~~~~iyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~-~~~~-r~~-~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~ 91 (274)
..+..|++|-. ..+++=+-.-.+|+.... .+.+ ... .++...++..|++|-.. -.+..
T Consensus 26 d~~~G~~VG~~---------g~il~T~DGG~tW~~~~~~~~~~~~~~l~~I~f~~~~g~ivG~~g--------~ll~T-- 86 (302)
T PF14870_consen 26 DPNHGWAVGAY---------GTILKTTDGGKTWQPVSLDLDNPFDYHLNSISFDGNEGWIVGEPG--------LLLHT-- 86 (302)
T ss_dssp SSS-EEEEETT---------TEEEEESSTTSS-EE-----S-----EEEEEEEETTEEEEEEETT--------EEEEE--
T ss_pred cCCEEEEEecC---------CEEEEECCCCccccccccCCCccceeeEEEEEecCCceEEEcCCc--------eEEEe--
Confidence 46778888642 223333334468998862 3322 233 33444578899987421 11221
Q ss_pred ecCCCCCCceeeccC---CCCCCCcceeEEeCCEEEEEccCCCCCCCCCCCCccccccCceeecCceEEeC-CCCCeEec
Q 024009 92 KDGKPLEKEWRTEIP---IPRGGPHRACVVVDDRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYDDVYMLD-DEMKWKVL 167 (274)
Q Consensus 92 ~~~d~~~~~W~~~~~---~p~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d-~~~~W~~~ 167 (274)
.-.-.+|+.++. +|.... ...+.-++.+.+++.. ..+|.-. .-.+|+.+
T Consensus 87 ---~DgG~tW~~v~l~~~lpgs~~-~i~~l~~~~~~l~~~~-----------------------G~iy~T~DgG~tW~~~ 139 (302)
T PF14870_consen 87 ---TDGGKTWERVPLSSKLPGSPF-GITALGDGSAELAGDR-----------------------GAIYRTTDGGKTWQAV 139 (302)
T ss_dssp ---SSTTSS-EE----TT-SS-EE-EEEEEETTEEEEEETT-------------------------EEEESSTTSSEEEE
T ss_pred ---cCCCCCcEEeecCCCCCCCee-EEEEcCCCcEEEEcCC-----------------------CcEEEeCCCCCCeeEc
Confidence 125678998752 332221 2233445667766542 2344443 66789887
Q ss_pred CCCCCCCccceeeEEEeCCEEEEEeccCCCCCCcccccccCceEEEEcCCCceEEeccCCCccceeeeEEEcCEEEEE
Q 024009 168 PSMPKPDSHIEFAWVLVNNSIVIVGGTTEKHPTTKKMVLVGEIFQFNLNTLKWHVIGKLPYRVKTTLAGYWNGWLYFT 245 (274)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~i~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~l~~~ 245 (274)
..-...... ......++++++++.. +. -....|+-...|+........|-......-++.|+++
T Consensus 140 ~~~~~gs~~--~~~r~~dG~~vavs~~-G~-----------~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~ 203 (302)
T PF14870_consen 140 VSETSGSIN--DITRSSDGRYVAVSSR-GN-----------FYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWML 203 (302)
T ss_dssp E-S----EE--EEEE-TTS-EEEEETT-SS-----------EEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEE
T ss_pred ccCCcceeE--eEEECCCCcEEEEECc-cc-----------EEEEecCCCccceEEccCccceehhceecCCCCEEEE
Confidence 643332221 2234456776666532 21 3446688888898764433333333333335666665
No 131
>smart00284 OLF Olfactomedin-like domains.
Probab=40.00 E-value=2.1e+02 Score=23.55 Aligned_cols=22 Identities=23% Similarity=0.389 Sum_probs=17.6
Q ss_pred CCCCCCCCceEEEECCeEEEEc
Q 024009 52 PLPVPRYAPATQLWRGRLHVMG 73 (274)
Q Consensus 52 ~~~~~r~~~~~~~~~~~iyv~G 73 (274)
.+|.+-.+...++++|.+|.--
T Consensus 69 ~Lp~~~~GtG~VVYngslYY~~ 90 (255)
T smart00284 69 PLPHAGQGTGVVVYNGSLYFNK 90 (255)
T ss_pred ECCCccccccEEEECceEEEEe
Confidence 4677778888889999999853
No 132
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=39.69 E-value=1.8e+02 Score=25.15 Aligned_cols=15 Identities=13% Similarity=0.319 Sum_probs=12.5
Q ss_pred EEeCCEEEEEeccCC
Q 024009 182 VLVNNSIVIVGGTTE 196 (274)
Q Consensus 182 ~~~~~~l~v~GG~~~ 196 (274)
+-++++-+|-|++.+
T Consensus 406 iRFd~krIVSGaYDG 420 (499)
T KOG0281|consen 406 IRFDNKRIVSGAYDG 420 (499)
T ss_pred eeecCceeeeccccc
Confidence 667888899999866
No 133
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=38.53 E-value=2.9e+02 Score=24.70 Aligned_cols=59 Identities=17% Similarity=0.285 Sum_probs=30.7
Q ss_pred CceEEeC-CCCCeEecCCCCCCCccceeeEEEeCCEEEEEeccCCCCCCcccccccCceEEEEcCCCceEEe
Q 024009 153 DDVYMLD-DEMKWKVLPSMPKPDSHIEFAWVLVNNSIVIVGGTTEKHPTTKKMVLVGEIFQFNLNTLKWHVI 223 (274)
Q Consensus 153 ~~~~~~d-~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~i~~yd~~~~~W~~~ 223 (274)
.++|.+| ...+-.++...+..-.. .+...-+.+|+..-...+ ...|+.+|++...=+++
T Consensus 262 ~~iy~~dl~~~~~~~Lt~~~gi~~~--Ps~spdG~~ivf~Sdr~G----------~p~I~~~~~~g~~~~ri 321 (425)
T COG0823 262 PDIYLMDLDGKNLPRLTNGFGINTS--PSWSPDGSKIVFTSDRGG----------RPQIYLYDLEGSQVTRL 321 (425)
T ss_pred ccEEEEcCCCCcceecccCCccccC--ccCCCCCCEEEEEeCCCC----------CcceEEECCCCCceeEe
Confidence 5899998 44332224333332221 232333444444422222 23899999988876665
No 134
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=37.39 E-value=3.5e+02 Score=25.25 Aligned_cols=11 Identities=36% Similarity=0.694 Sum_probs=6.9
Q ss_pred CEEEEEccCCC
Q 024009 121 DRLLVIGGQEG 131 (274)
Q Consensus 121 ~~iyv~GG~~~ 131 (274)
..|+.+|+.++
T Consensus 187 hgLla~Gt~~g 197 (703)
T KOG2321|consen 187 HGLLACGTEDG 197 (703)
T ss_pred cceEEecccCc
Confidence 34777777553
No 135
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=37.01 E-value=2.4e+02 Score=23.24 Aligned_cols=51 Identities=25% Similarity=0.565 Sum_probs=28.7
Q ss_pred CCCCeEe--cCCCCCCCccceeeEEEeCCEEEEEeccCCCCCCcccccccCceEEEEcC-CCceEEecc
Q 024009 160 DEMKWKV--LPSMPKPDSHIEFAWVLVNNSIVIVGGTTEKHPTTKKMVLVGEIFQFNLN-TLKWHVIGK 225 (274)
Q Consensus 160 ~~~~W~~--~~~~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~i~~yd~~-~~~W~~~~~ 225 (274)
+.+.|+. +.+.|.+..+ .+....++-|-|-||- + .+..+-.+ ..+|++++.
T Consensus 243 e~e~wk~tll~~f~~~~w~--vSWS~sGn~LaVs~Gd-N------------kvtlwke~~~Gkw~~v~~ 296 (299)
T KOG1332|consen 243 EYEPWKKTLLEEFPDVVWR--VSWSLSGNILAVSGGD-N------------KVTLWKENVDGKWEEVGE 296 (299)
T ss_pred ccCcccccccccCCcceEE--EEEeccccEEEEecCC-c------------EEEEEEeCCCCcEEEccc
Confidence 4566744 3456666665 4445556666666553 2 34444444 448988754
No 136
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=36.86 E-value=3.3e+02 Score=24.80 Aligned_cols=38 Identities=18% Similarity=0.283 Sum_probs=24.7
Q ss_pred CeeEEEECCCCCeeeCCCCCCCCCCceEEEE--CCeEEEEcC
Q 024009 35 AHTFVLDTETKKWQDLPPLPVPRYAPATQLW--RGRLHVMGG 74 (274)
Q Consensus 35 ~~~~~~d~~~~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG 74 (274)
-+++.++.+.++-.++.-+ .|....++-+ +++|.|.--
T Consensus 107 aDly~v~~e~Ge~kRiTyf--Gr~fT~VaG~~~dg~iiV~TD 146 (668)
T COG4946 107 ADLYVVPSEDGEAKRITYF--GRRFTRVAGWIPDGEIIVSTD 146 (668)
T ss_pred ccEEEEeCCCCcEEEEEEe--ccccceeeccCCCCCEEEEec
Confidence 5778888888887777655 2444444433 777887643
No 137
>PLN00181 protein SPA1-RELATED; Provisional
Probab=36.61 E-value=4.1e+02 Score=25.86 Aligned_cols=23 Identities=17% Similarity=0.380 Sum_probs=13.8
Q ss_pred EeCCEEEEEeccCCCCCCcccccccCceEEEEcCC
Q 024009 183 LVNNSIVIVGGTTEKHPTTKKMVLVGEIFQFNLNT 217 (274)
Q Consensus 183 ~~~~~l~v~GG~~~~~~~~~~~~~~~~i~~yd~~~ 217 (274)
..++..++.++..+ .+..||+.+
T Consensus 669 f~~~~~lvs~s~D~------------~ikiWd~~~ 691 (793)
T PLN00181 669 FVDSSTLVSSSTDN------------TLKLWDLSM 691 (793)
T ss_pred EeCCCEEEEEECCC------------EEEEEeCCC
Confidence 34666667766432 577777653
No 138
>PF13540 RCC1_2: Regulator of chromosome condensation (RCC1) repeat; PDB: 3QI0_D 1JTD_B 3QHY_B.
Probab=35.52 E-value=47 Score=16.95 Aligned_cols=20 Identities=15% Similarity=0.115 Sum_probs=13.6
Q ss_pred CCcCceeeEEeCCEEEEEcC
Q 024009 5 MAHSHLGMVTDGRYIYVVTG 24 (274)
Q Consensus 5 ~~r~~~~~~~~~~~iyv~GG 24 (274)
+...|..+...++++|.+|-
T Consensus 6 ~G~~ht~al~~~g~v~~wG~ 25 (30)
T PF13540_consen 6 CGGYHTCALTSDGEVYCWGD 25 (30)
T ss_dssp EESSEEEEEE-TTEEEEEE-
T ss_pred ecCCEEEEEEcCCCEEEEcC
Confidence 34556666677999999985
No 139
>PTZ00421 coronin; Provisional
Probab=35.44 E-value=3.5e+02 Score=24.73 Aligned_cols=27 Identities=19% Similarity=0.342 Sum_probs=16.5
Q ss_pred CCEEEEEeccCCCCCCcccccccCceEEEEcCCCceEE
Q 024009 185 NNSIVIVGGTTEKHPTTKKMVLVGEIFQFNLNTLKWHV 222 (274)
Q Consensus 185 ~~~l~v~GG~~~~~~~~~~~~~~~~i~~yd~~~~~W~~ 222 (274)
++.++++||.... .|..||+.+.+...
T Consensus 270 d~~~L~lggkgDg-----------~Iriwdl~~~~~~~ 296 (493)
T PTZ00421 270 DTNLLYIGSKGEG-----------NIRCFELMNERLTF 296 (493)
T ss_pred CCCEEEEEEeCCC-----------eEEEEEeeCCceEE
Confidence 4566666663221 68888887776543
No 140
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=33.70 E-value=3.5e+02 Score=24.21 Aligned_cols=21 Identities=14% Similarity=0.485 Sum_probs=15.5
Q ss_pred ceEEeC-CCCCeEecCCCCCCC
Q 024009 154 DVYMLD-DEMKWKVLPSMPKPD 174 (274)
Q Consensus 154 ~~~~~d-~~~~W~~~~~~~~~~ 174 (274)
.+|.++ .+.+|+.+..++.-.
T Consensus 455 ~Vy~~~k~~k~W~~~~~~~~~s 476 (506)
T KOG0289|consen 455 QVYICKKKTKSWTEIKELADHS 476 (506)
T ss_pred EEEEEecccccceeeehhhhcc
Confidence 467776 788999998766543
No 141
>PF07734 FBA_1: F-box associated; InterPro: IPR006527 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=33.54 E-value=2e+02 Score=21.44 Aligned_cols=85 Identities=14% Similarity=0.149 Sum_probs=47.3
Q ss_pred EEeCCEEEEEcCcCCCCCCCCCCeeEEEECCCCCeeeCCCCCCCCC----CceEEEE-CCeEEEEcCCCCCCCCCCccce
Q 024009 13 VTDGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLPVPRY----APATQLW-RGRLHVMGGSGENRYTPEVDHW 87 (274)
Q Consensus 13 ~~~~~~iyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~~~~r~----~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~ 87 (274)
+.++|.+|=++-...... ...+-.||..+.+..+..++|.... ...+..+ ++.|.++--. ......+.|
T Consensus 2 V~vnG~~hW~~~~~~~~~---~~~IlsFDl~~E~F~~~~~lP~~~~~~~~~~~L~~v~~~~L~~~~~~---~~~~~~~IW 75 (164)
T PF07734_consen 2 VFVNGALHWLAYDENNDE---KDFILSFDLSTEKFGRSLPLPFCNDDDDDSVSLSVVRGDCLCVLYQC---DETSKIEIW 75 (164)
T ss_pred EEECCEEEeeEEecCCCC---ceEEEEEeccccccCCEECCCCccCccCCEEEEEEecCCEEEEEEec---cCCccEEEE
Confidence 456777877765433221 1268899999999943334443322 2333233 6778777321 112346777
Q ss_pred EeeeecCCCCCCceeecc
Q 024009 88 SLAVKDGKPLEKEWRTEI 105 (274)
Q Consensus 88 ~~~~~~~d~~~~~W~~~~ 105 (274)
-..-+++. ..+|++.-
T Consensus 76 vm~~~~~~--~~SWtK~~ 91 (164)
T PF07734_consen 76 VMKKYGYG--KESWTKLF 91 (164)
T ss_pred EEeeeccC--cceEEEEE
Confidence 65433333 78898854
No 142
>PRK13684 Ycf48-like protein; Provisional
Probab=33.28 E-value=3.1e+02 Score=23.45 Aligned_cols=77 Identities=9% Similarity=0.158 Sum_probs=37.4
Q ss_pred eEEeC-CCCCeEecCCCCCCCccceeeEEEeCCEEEEEeccCCCCCCcccccccCceEEE-EcCCCceEEeccCCCccce
Q 024009 155 VYMLD-DEMKWKVLPSMPKPDSHIEFAWVLVNNSIVIVGGTTEKHPTTKKMVLVGEIFQF-NLNTLKWHVIGKLPYRVKT 232 (274)
Q Consensus 155 ~~~~d-~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~i~~y-d~~~~~W~~~~~~p~~~~~ 232 (274)
++.-+ .-.+|+.+........ ..+....+..+++.|..+ .++.- |....+|+.+.. +..+..
T Consensus 154 i~~S~DgG~tW~~~~~~~~g~~---~~i~~~~~g~~v~~g~~G------------~i~~s~~~gg~tW~~~~~-~~~~~l 217 (334)
T PRK13684 154 IYRTTDGGKNWEALVEDAAGVV---RNLRRSPDGKYVAVSSRG------------NFYSTWEPGQTAWTPHQR-NSSRRL 217 (334)
T ss_pred EEEECCCCCCceeCcCCCcceE---EEEEECCCCeEEEEeCCc------------eEEEEcCCCCCeEEEeeC-CCcccc
Confidence 44433 6679998875443211 223333343444433222 34433 444567988743 333333
Q ss_pred eeeEEE-cCEEEEEcc
Q 024009 233 TLAGYW-NGWLYFTSG 247 (274)
Q Consensus 233 ~~~~~~-~~~l~~~GG 247 (274)
.++... ++.++++|.
T Consensus 218 ~~i~~~~~g~~~~vg~ 233 (334)
T PRK13684 218 QSMGFQPDGNLWMLAR 233 (334)
T ss_pred eeeeEcCCCCEEEEec
Confidence 333333 566776654
No 143
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=33.13 E-value=3.8e+02 Score=24.37 Aligned_cols=179 Identities=13% Similarity=0.076 Sum_probs=0.0
Q ss_pred EcCcCCCCCCCCCCee--EEEECCCCCeeeCCCCCCCCCCceEEEECCeEEEEcCCCCCCCCCCccceEeeeecCCCCCC
Q 024009 22 VTGQYGPQCRGPTAHT--FVLDTETKKWQDLPPLPVPRYAPATQLWRGRLHVMGGSGENRYTPEVDHWSLAVKDGKPLEK 99 (274)
Q Consensus 22 ~GG~~~~~~~~~~~~~--~~~d~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~d~~~~ 99 (274)
+||-.......++..+ ...+..+-.|+.-..- ......+-++.++++|+.... ..+..++.. .-+.
T Consensus 16 ~~~~~~~~~~~~~~~i~~~n~~~~~~~W~~~~~~-~~~~~~sPvv~~g~vy~~~~~------g~l~AlD~~-----tG~~ 83 (488)
T cd00216 16 YGRTYAGQRFSPLKQINAANVKKLKVAWTFSTGD-ERGQEGTPLVVDGDMYFTTSH------SALFALDAA-----TGKV 83 (488)
T ss_pred cCCCCCCCccCchhhcChhhhhcceeeEEEECCC-CCCcccCCEEECCEEEEeCCC------CcEEEEECC-----CChh
Q ss_pred ceeeccCCC-----CCCCcceeEEeC-CEEEEEccCCCCCCCCCCCCccccccCceeecCceEEeC---CCCCeEecCCC
Q 024009 100 EWRTEIPIP-----RGGPHRACVVVD-DRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYDDVYMLD---DEMKWKVLPSM 170 (274)
Q Consensus 100 ~W~~~~~~p-----~~~~~~~~~~~~-~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d---~~~~W~~~~~~ 170 (274)
.|+.-...+ .......++..+ ++||+... ...++.+| .+..|+.-...
T Consensus 84 ~W~~~~~~~~~~~~~~~~~~g~~~~~~~~V~v~~~-----------------------~g~v~AlD~~TG~~~W~~~~~~ 140 (488)
T cd00216 84 LWRYDPKLPADRGCCDVVNRGVAYWDPRKVFFGTF-----------------------DGRLVALDAETGKQVWKFGNND 140 (488)
T ss_pred hceeCCCCCccccccccccCCcEEccCCeEEEecC-----------------------CCeEEEEECCCCCEeeeecCCC
Q ss_pred CC-CCccceeeEEEeCCEEEEEe--------ccCCCCCCcccccccCceEEEEcCCCceEEeccC---------------
Q 024009 171 PK-PDSHIEFAWVLVNNSIVIVG--------GTTEKHPTTKKMVLVGEIFQFNLNTLKWHVIGKL--------------- 226 (274)
Q Consensus 171 ~~-~~~~~~~~~~~~~~~l~v~G--------G~~~~~~~~~~~~~~~~i~~yd~~~~~W~~~~~~--------------- 226 (274)
+. .......+.++.++.+|+.. +..+ .++++|.++.+=....++
T Consensus 141 ~~~~~~~i~ssP~v~~~~v~vg~~~~~~~~~~~~g------------~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~ 208 (488)
T cd00216 141 QVPPGYTMTGAPTIVKKLVIIGSSGAEFFACGVRG------------ALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDR 208 (488)
T ss_pred CcCcceEecCCCEEECCEEEEeccccccccCCCCc------------EEEEEECCCCceeeEeeccCCCcCCCCCCCCCc
Q ss_pred -------CCccceeeeEEEcCEEEEEcc
Q 024009 227 -------PYRVKTTLAGYWNGWLYFTSG 247 (274)
Q Consensus 227 -------p~~~~~~~~~~~~~~l~~~GG 247 (274)
+.....+++...++.+|+-.|
T Consensus 209 ~~~~~~g~~vw~~pa~d~~~g~V~vg~~ 236 (488)
T cd00216 209 QMWGPGGGTSWASPTYDPKTNLVYVGTG 236 (488)
T ss_pred ceecCCCCCccCCeeEeCCCCEEEEECC
No 144
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=32.81 E-value=3.4e+02 Score=23.75 Aligned_cols=81 Identities=19% Similarity=0.288 Sum_probs=45.7
Q ss_pred CceEEeC-CC-----CCeEecCCCCCCCccceeeEEEeCCEEEEEeccCCCCCCcccccccCceEEEEcCCCc---eE-E
Q 024009 153 DDVYMLD-DE-----MKWKVLPSMPKPDSHIEFAWVLVNNSIVIVGGTTEKHPTTKKMVLVGEIFQFNLNTLK---WH-V 222 (274)
Q Consensus 153 ~~~~~~d-~~-----~~W~~~~~~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~i~~yd~~~~~---W~-~ 222 (274)
+++|..+ .. ..|..+.+-..... ..+...++.+|+....... ...+..+++.+.. |. .
T Consensus 252 s~v~~~d~~~~~~~~~~~~~l~~~~~~~~---~~v~~~~~~~yi~Tn~~a~---------~~~l~~~~l~~~~~~~~~~~ 319 (414)
T PF02897_consen 252 SEVYLLDLDDGGSPDAKPKLLSPREDGVE---YYVDHHGDRLYILTNDDAP---------NGRLVAVDLADPSPAEWWTV 319 (414)
T ss_dssp EEEEEEECCCTTTSS-SEEEEEESSSS-E---EEEEEETTEEEEEE-TT-T---------T-EEEEEETTSTSGGGEEEE
T ss_pred CeEEEEeccccCCCcCCcEEEeCCCCceE---EEEEccCCEEEEeeCCCCC---------CcEEEEecccccccccceeE
Confidence 5788887 43 36777754222222 2345568899998653222 2378899888775 76 4
Q ss_pred eccCCCccceeeeEEEcCEEEEE
Q 024009 223 IGKLPYRVKTTLAGYWNGWLYFT 245 (274)
Q Consensus 223 ~~~~p~~~~~~~~~~~~~~l~~~ 245 (274)
+.+-.....-..+...++.|++.
T Consensus 320 l~~~~~~~~l~~~~~~~~~Lvl~ 342 (414)
T PF02897_consen 320 LIPEDEDVSLEDVSLFKDYLVLS 342 (414)
T ss_dssp EE--SSSEEEEEEEEETTEEEEE
T ss_pred EcCCCCceeEEEEEEECCEEEEE
Confidence 43333333444555567777766
No 145
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=31.69 E-value=3.1e+02 Score=23.00 Aligned_cols=23 Identities=13% Similarity=0.070 Sum_probs=13.7
Q ss_pred ceEEE--EcCCCceEEeccCCCccc
Q 024009 209 EIFQF--NLNTLKWHVIGKLPYRVK 231 (274)
Q Consensus 209 ~i~~y--d~~~~~W~~~~~~p~~~~ 231 (274)
.+..| |..+..++.+..++....
T Consensus 297 ~v~v~~~~~~~g~l~~~~~~~~g~~ 321 (330)
T PRK11028 297 HISVYEIDGETGLLTELGRYAVGQG 321 (330)
T ss_pred cEEEEEEcCCCCcEEEccccccCCC
Confidence 45555 556777877766554443
No 146
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=31.60 E-value=3.8e+02 Score=24.00 Aligned_cols=37 Identities=14% Similarity=0.231 Sum_probs=23.6
Q ss_pred ceEEEEcCCCceEEeccCCCccceeeeEEEc-CEEEEE
Q 024009 209 EIFQFNLNTLKWHVIGKLPYRVKTTLAGYWN-GWLYFT 245 (274)
Q Consensus 209 ~i~~yd~~~~~W~~~~~~p~~~~~~~~~~~~-~~l~~~ 245 (274)
.||.|+-++..|+++..++....-...+.++ ...|++
T Consensus 455 ~Vy~~~k~~k~W~~~~~~~~~sg~st~v~Fg~~aq~l~ 492 (506)
T KOG0289|consen 455 QVYICKKKTKSWTEIKELADHSGLSTGVRFGEHAQYLA 492 (506)
T ss_pred EEEEEecccccceeeehhhhcccccceeeecccceEEe
Confidence 6888888899999987766554333334443 344444
No 147
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=30.82 E-value=2.8e+02 Score=23.60 Aligned_cols=48 Identities=13% Similarity=0.209 Sum_probs=28.2
Q ss_pred CEEEEEcCcCCCCCCCCCCeeEEEECCCCCeeeCCCCC--------------CCCCCceEEEE
Q 024009 17 RYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLP--------------VPRYAPATQLW 65 (274)
Q Consensus 17 ~~iyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~~--------------~~r~~~~~~~~ 65 (274)
..++.+|-.+... +-....+|.|+-..++|..++.+| ..|.+|.+++.
T Consensus 184 ~p~iAvgs~e~a~-~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA 245 (361)
T KOG2445|consen 184 EPLIAVGSDEDAP-HLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVA 245 (361)
T ss_pred CceEEEEcccCCc-cccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEe
Confidence 3355555544222 112235677888888999987543 24677777665
No 148
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=30.46 E-value=3.4e+02 Score=23.06 Aligned_cols=87 Identities=11% Similarity=0.051 Sum_probs=53.5
Q ss_pred ceEEeC-CCCCeEecCCCCCCCccceeeEEEeCCEEEEEeccCCCCCCcccccccCceEEEEcCCCceEEeccCCCcc-c
Q 024009 154 DVYMLD-DEMKWKVLPSMPKPDSHIEFAWVLVNNSIVIVGGTTEKHPTTKKMVLVGEIFQFNLNTLKWHVIGKLPYRV-K 231 (274)
Q Consensus 154 ~~~~~d-~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~i~~yd~~~~~W~~~~~~p~~~-~ 231 (274)
-.+.+| .+.+=...-..+..|...++++..-+++++.......... -..|-+||.. +...++.+.+..- .
T Consensus 29 ~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g-------~G~IgVyd~~-~~~~ri~E~~s~GIG 100 (305)
T PF07433_consen 29 FALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETG-------RGVIGVYDAA-RGYRRIGEFPSHGIG 100 (305)
T ss_pred EEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCC-------cEEEEEEECc-CCcEEEeEecCCCcC
Confidence 456666 5554433334477787777877777776666544333221 2379999988 7788888887553 3
Q ss_pred eeeeEEE-cC-EEEEE-ccc
Q 024009 232 TTLAGYW-NG-WLYFT-SGQ 248 (274)
Q Consensus 232 ~~~~~~~-~~-~l~~~-GG~ 248 (274)
.|-+... ++ .|.|. ||.
T Consensus 101 PHel~l~pDG~tLvVANGGI 120 (305)
T PF07433_consen 101 PHELLLMPDGETLVVANGGI 120 (305)
T ss_pred hhhEEEcCCCCEEEEEcCCC
Confidence 5666555 44 56655 443
No 149
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=29.39 E-value=1e+02 Score=16.64 Aligned_cols=27 Identities=30% Similarity=0.448 Sum_probs=16.4
Q ss_pred ceeeEEeCCEEEEEcCcCCCCCCCCCCeeEEEECCC
Q 024009 9 HLGMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTET 44 (274)
Q Consensus 9 ~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~d~~~ 44 (274)
..+.++.++.+|+.+. -..++.+|+++
T Consensus 14 ~~~~~v~~g~vyv~~~---------dg~l~ald~~t 40 (40)
T PF13570_consen 14 WSSPAVAGGRVYVGTG---------DGNLYALDAAT 40 (40)
T ss_dssp -S--EECTSEEEEE-T---------TSEEEEEETT-
T ss_pred CcCCEEECCEEEEEcC---------CCEEEEEeCCC
Confidence 3455677888888854 25688888764
No 150
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=29.28 E-value=3.2e+02 Score=22.42 Aligned_cols=50 Identities=20% Similarity=0.090 Sum_probs=31.6
Q ss_pred eCCEEEEEeccCCCCCCcccccccCceEEEEcCCCceEEeccCCCccceeeeEEEc--CEEEEE
Q 024009 184 VNNSIVIVGGTTEKHPTTKKMVLVGEIFQFNLNTLKWHVIGKLPYRVKTTLAGYWN--GWLYFT 245 (274)
Q Consensus 184 ~~~~l~v~GG~~~~~~~~~~~~~~~~i~~yd~~~~~W~~~~~~p~~~~~~~~~~~~--~~l~~~ 245 (274)
-++.|||..-.. .+++.+||.+.+-..--.+|.++...++..-. +.+|+.
T Consensus 221 ~eG~L~Va~~ng------------~~V~~~dp~tGK~L~eiklPt~qitsccFgGkn~d~~yvT 272 (310)
T KOG4499|consen 221 TEGNLYVATFNG------------GTVQKVDPTTGKILLEIKLPTPQITSCCFGGKNLDILYVT 272 (310)
T ss_pred cCCcEEEEEecC------------cEEEEECCCCCcEEEEEEcCCCceEEEEecCCCccEEEEE
Confidence 367888864221 18999999999986656788776443333222 346655
No 151
>PF04616 Glyco_hydro_43: Glycosyl hydrolases family 43; InterPro: IPR006710 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 43 GH43 from CAZY includes enzymes with the following activities, beta-xylosidase (3.2.1.37 from EC), alpha-L-arabinofuranosidase (3.2.1.55 from EC); arabinanase (3.2.1.99 from EC), and xylanase (3.2.1.8 from EC).; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3KST_B 1UV4_A 1YRZ_A 1YIF_B 3NQH_A 3QED_D 3QEE_A 3QEF_B 1YI7_A 1Y7B_B ....
Probab=28.95 E-value=3.2e+02 Score=22.28 Aligned_cols=160 Identities=11% Similarity=0.089 Sum_probs=82.9
Q ss_pred CCCceEEEECCeEEEEcCCCCCCCCCCccceEeeeecCCCCCCceeeccC----CCCC------C-CcceeEEeCCEEEE
Q 024009 57 RYAPATQLWRGRLHVMGGSGENRYTPEVDHWSLAVKDGKPLEKEWRTEIP----IPRG------G-PHRACVVVDDRLLV 125 (274)
Q Consensus 57 r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~----~p~~------~-~~~~~~~~~~~iyv 125 (274)
.....++..++..|+++...... ..+.++++ ..-..|+.... .+.. . ....+...+++.|+
T Consensus 10 ~~DP~i~~~~~~yY~~~t~~~~~--~~i~v~~S------~DL~~W~~~g~~~~~~~~~~~~~~~~~WAP~i~~~~g~yy~ 81 (286)
T PF04616_consen 10 YADPSIVRFGDGYYLYGTTDPEG--PGIPVWSS------KDLVNWTDAGNVLPPPPDWDWANNGNIWAPEIHYINGKYYM 81 (286)
T ss_dssp ECSEEEEEETTEEEEEEEEBTCE--SBEEEEEE------SSSSSEEEEEECESSTTTTSTTTSETTEEEEEEEETTEEEE
T ss_pred CCCCEEEEECCEEEEEEEcCCCC--CeEEEEEC------CCCcccccceeeecccccccccccccccCCeEEEcCCeEEE
Confidence 35677788888899988654221 44556654 23445776442 1111 1 23445567888777
Q ss_pred EccCCCCCCCCCCCCccccccCceeecCceEEe--C-CCCCeEecCCCCC-CCccceeeEEEeC-CEEEEEeccCCCCCC
Q 024009 126 IGGQEGDFMAKPGSPIFKCSRRNEVVYDDVYML--D-DEMKWKVLPSMPK-PDSHIEFAWVLVN-NSIVIVGGTTEKHPT 200 (274)
Q Consensus 126 ~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--d-~~~~W~~~~~~~~-~~~~~~~~~~~~~-~~l~v~GG~~~~~~~ 200 (274)
+-...... . ...++.. + ....|+....+.. .......++...+ ++.|++-+......
T Consensus 82 y~~~~~~~-------------~----~~~~~va~a~~~~Gp~~~~~~~~~~~~~~iD~~vf~d~dG~~Yl~~~~~~~~~- 143 (286)
T PF04616_consen 82 YYSDSGGD-------------A----GSGIGVATADSPDGPWTDPGKIPIPGGNSIDPSVFVDDDGKYYLYYGSWDNGD- 143 (286)
T ss_dssp EEEEESTS-------------T----TEEEEEEEESSTTS-EEEEEEEEEESSSSSSEEEEEETTSEEEEEEEESTTTS-
T ss_pred EEEccCCC-------------C----CcceeEEEeCCcccccccccceeeccccccCceEEEecCCCcEEeCcccCCCc-
Confidence 75511110 0 0112322 3 5578887765431 2222235556666 89999876544331
Q ss_pred cccccccCceEE--EEcCCCceEEec------cC----CCccceeeeEEEcCEEEEEcc
Q 024009 201 TKKMVLVGEIFQ--FNLNTLKWHVIG------KL----PYRVKTTLAGYWNGWLYFTSG 247 (274)
Q Consensus 201 ~~~~~~~~~i~~--yd~~~~~W~~~~------~~----p~~~~~~~~~~~~~~l~~~GG 247 (274)
....++. ++....++..-. .. .....++.+...+++.|++--
T Consensus 144 -----~~~~i~~~~l~~d~~~~~~~~~~~~~~~~~~~~~~~~Egp~~~k~~g~yYl~~s 197 (286)
T PF04616_consen 144 -----PGGGIYIAELDPDGTSLTGEPVVVIFPGDEGWDGGVVEGPFVFKHGGKYYLFYS 197 (286)
T ss_dssp -----SEEEEEEEEEETTTSSEEEEECEEEEEESGSSTTTBEEEEEEEEETTEEEEEEE
T ss_pred -----cceeEEeecccCccccccCcccccccccccccCCccccceEEEEcCCCEEEEEe
Confidence 1123444 444444443321 11 123356888888999998843
No 152
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=28.58 E-value=2.5e+02 Score=23.92 Aligned_cols=56 Identities=16% Similarity=0.301 Sum_probs=34.9
Q ss_pred CCEEEEEcCcCCCCCCCCCCeeEEEECCCCCee-eC---CCCC--CCCCCceEEEECCeEEEEc
Q 024009 16 GRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQ-DL---PPLP--VPRYAPATQLWRGRLHVMG 73 (274)
Q Consensus 16 ~~~iyv~GG~~~~~~~~~~~~~~~~d~~~~~W~-~~---~~~~--~~r~~~~~~~~~~~iyv~G 73 (274)
-+.+-++||...+.. +.+++.++|-...+-. ++ .+.- .-|..+.+++..++|||+-
T Consensus 58 ~N~laLVGGg~~pky--~pNkviIWDD~k~~~i~el~f~~~I~~V~l~r~riVvvl~~~I~Vyt 119 (346)
T KOG2111|consen 58 SNYLALVGGGSRPKY--PPNKVIIWDDLKERCIIELSFNSEIKAVKLRRDRIVVVLENKIYVYT 119 (346)
T ss_pred hceEEEecCCCCCCC--CCceEEEEecccCcEEEEEEeccceeeEEEcCCeEEEEecCeEEEEE
Confidence 466777788665553 4678888885544321 11 1221 2356778888899999974
No 153
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=28.54 E-value=1.3e+02 Score=26.03 Aligned_cols=55 Identities=16% Similarity=0.200 Sum_probs=27.5
Q ss_pred cCceEEeC-CCCCeEecCCCCCCCccceeeEEEeCCE--EEEEeccCCCCCCcccccccCceEEEEcCCCceE
Q 024009 152 YDDVYMLD-DEMKWKVLPSMPKPDSHIEFAWVLVNNS--IVIVGGTTEKHPTTKKMVLVGEIFQFNLNTLKWH 221 (274)
Q Consensus 152 ~~~~~~~d-~~~~W~~~~~~~~~~~~~~~~~~~~~~~--l~v~GG~~~~~~~~~~~~~~~~i~~yd~~~~~W~ 221 (274)
..++|.|| .+.+-...-++..+... .+ +.-+++ ||.+-+. . ..+++||..+.+-.
T Consensus 268 gteVWv~D~~t~krv~Ri~l~~~~~S--i~-Vsqd~~P~L~~~~~~--~----------~~l~v~D~~tGk~~ 325 (342)
T PF06433_consen 268 GTEVWVYDLKTHKRVARIPLEHPIDS--IA-VSQDDKPLLYALSAG--D----------GTLDVYDAATGKLV 325 (342)
T ss_dssp EEEEEEEETTTTEEEEEEEEEEEESE--EE-EESSSS-EEEEEETT--T----------TEEEEEETTT--EE
T ss_pred ceEEEEEECCCCeEEEEEeCCCccce--EE-EccCCCcEEEEEcCC--C----------CeEEEEeCcCCcEE
Confidence 57999998 55543322233322211 22 333443 4444221 1 17999999998654
No 154
>smart00155 PLDc Phospholipase D. Active site motifs. Phosphatidylcholine-hydrolyzing phospholipase D (PLD) isoforms are activated by ADP-ribosylation factors (ARFs). PLD produces phosphatidic acid from phosphatidylcholine, which may be essential for the formation of certain types of transport vesicles or may be constitutive vesicular transport to signal transduction pathways. PC-hydrolysing PLD is a homologue of cardiolipin synthase, phosphatidylserine synthase, bacterial PLDs, and viral proteins. Each of these appears to possess a domain duplication which is apparent by the presence of two motifs containing well-conserved histidine, lysine, aspartic acid, and/or asparagine residues which may contribute to the active site. An E. coli endonuclease (nuc) and similar proteins appear to be PLD homologues but possess only one of these motifs. The profile contained here represents only the putative active site regions, since an accurate multiple alignment of the repeat units has not be
Probab=28.09 E-value=75 Score=15.75 Aligned_cols=20 Identities=10% Similarity=-0.014 Sum_probs=14.9
Q ss_pred cCceeeEEeCCEEEEEcCcC
Q 024009 7 HSHLGMVTDGRYIYVVTGQY 26 (274)
Q Consensus 7 r~~~~~~~~~~~iyv~GG~~ 26 (274)
+.|.-+++++++..++|+.+
T Consensus 4 ~~H~K~~v~D~~~~~iGs~N 23 (28)
T smart00155 4 VLHTKLMIVDDEIAYIGSAN 23 (28)
T ss_pred cEEeEEEEEcCCEEEEeCcc
Confidence 44556778899888888864
No 155
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=27.97 E-value=2.9e+02 Score=23.25 Aligned_cols=77 Identities=16% Similarity=0.145 Sum_probs=0.0
Q ss_pred ceEEeC-CCCCeEecC-CCCCCCccceeeEEEeCCEEEEEeccCCCCCCcccccccCceEEEEcCCCceEEeccCCCccc
Q 024009 154 DVYMLD-DEMKWKVLP-SMPKPDSHIEFAWVLVNNSIVIVGGTTEKHPTTKKMVLVGEIFQFNLNTLKWHVIGKLPYRVK 231 (274)
Q Consensus 154 ~~~~~d-~~~~W~~~~-~~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~i~~yd~~~~~W~~~~~~p~~~~ 231 (274)
.++.|| .+.+|...+ +...++.. ...+--.+++++----.+ .|.+||+++.+.+.++.--....
T Consensus 255 ~l~rfdPs~~sW~eypLPgs~arpy--s~rVD~~grVW~sea~ag------------ai~rfdpeta~ftv~p~pr~n~g 320 (353)
T COG4257 255 SLHRFDPSVTSWIEYPLPGSKARPY--SMRVDRHGRVWLSEADAG------------AIGRFDPETARFTVLPIPRPNSG 320 (353)
T ss_pred eeeEeCcccccceeeeCCCCCCCcc--eeeeccCCcEEeeccccC------------ceeecCcccceEEEecCCCCCCC
Q ss_pred eeeeEEEcCEEEE
Q 024009 232 TTLAGYWNGWLYF 244 (274)
Q Consensus 232 ~~~~~~~~~~l~~ 244 (274)
...+--..++++.
T Consensus 321 n~ql~gr~ge~W~ 333 (353)
T COG4257 321 NIQLDGRPGELWF 333 (353)
T ss_pred ceeccCCCCceee
No 156
>TIGR03032 conserved hypothetical protein TIGR03032. This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.
Probab=26.98 E-value=2.3e+02 Score=24.31 Aligned_cols=55 Identities=18% Similarity=0.217 Sum_probs=0.0
Q ss_pred CCCCCCcCceeeEEeCCEEEEEcCcCCCCCCCCCCeeEEEECCCCCeeeCCCCCCCCCCceEEEECCeEEEEc
Q 024009 1 MPREMAHSHLGMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLPVPRYAPATQLWRGRLHVMG 73 (274)
Q Consensus 1 ~p~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~G 73 (274)
|| ++|| ..++++|+. .....++..+|+++++.+.+..+|--..+-+-. |.+.++|
T Consensus 204 mP-hSPR------WhdgrLwvl--------dsgtGev~~vD~~~G~~e~Va~vpG~~rGL~f~---G~llvVg 258 (335)
T TIGR03032 204 MP-HSPR------WYQGKLWLL--------NSGRGELGYVDPQAGKFQPVAFLPGFTRGLAFA---GDFAFVG 258 (335)
T ss_pred CC-cCCc------EeCCeEEEE--------ECCCCEEEEEcCCCCcEEEEEECCCCCccccee---CCEEEEE
No 157
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=26.97 E-value=4.7e+02 Score=23.55 Aligned_cols=32 Identities=6% Similarity=0.261 Sum_probs=22.0
Q ss_pred cceeeEEEeCCEEEEEeccCCCCCCcccccccCceEEEEcCCCc
Q 024009 176 HIEFAWVLVNNSIVIVGGTTEKHPTTKKMVLVGEIFQFNLNTLK 219 (274)
Q Consensus 176 ~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~i~~yd~~~~~ 219 (274)
...|-+...++.+++.|+..+ .+.++|+.+++
T Consensus 279 ~ITcLais~DgtlLlSGd~dg------------~VcvWdi~S~Q 310 (476)
T KOG0646|consen 279 AITCLAISTDGTLLLSGDEDG------------KVCVWDIYSKQ 310 (476)
T ss_pred ceeEEEEecCccEEEeeCCCC------------CEEEEecchHH
Confidence 334556778999999998755 56666665554
No 158
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=26.78 E-value=3e+02 Score=21.30 Aligned_cols=11 Identities=27% Similarity=0.262 Sum_probs=8.0
Q ss_pred ceEEEEcCCCc
Q 024009 209 EIFQFNLNTLK 219 (274)
Q Consensus 209 ~i~~yd~~~~~ 219 (274)
.+..||..+.+
T Consensus 242 ~i~i~~~~~~~ 252 (289)
T cd00200 242 TIRVWDLRTGE 252 (289)
T ss_pred cEEEEEcCCce
Confidence 68888887643
No 159
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=26.37 E-value=2e+02 Score=27.02 Aligned_cols=14 Identities=21% Similarity=0.501 Sum_probs=9.8
Q ss_pred eCCEEEEEccCCCC
Q 024009 119 VDDRLLVIGGQEGD 132 (274)
Q Consensus 119 ~~~~iyv~GG~~~~ 132 (274)
.++.+++-||.+..
T Consensus 128 k~~~lvaSgGLD~~ 141 (735)
T KOG0308|consen 128 KNNELVASGGLDRK 141 (735)
T ss_pred cCceeEEecCCCcc
Confidence 35668888887743
No 160
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=25.69 E-value=4.7e+02 Score=23.16 Aligned_cols=50 Identities=8% Similarity=0.100 Sum_probs=29.3
Q ss_pred EeCCEEEEEeccCCCCCCcccccccCceEEEEcCCCceEEec---cCCCccceeeeE-EEcCEEEEEcc
Q 024009 183 LVNNSIVIVGGTTEKHPTTKKMVLVGEIFQFNLNTLKWHVIG---KLPYRVKTTLAG-YWNGWLYFTSG 247 (274)
Q Consensus 183 ~~~~~l~v~GG~~~~~~~~~~~~~~~~i~~yd~~~~~W~~~~---~~p~~~~~~~~~-~~~~~l~~~GG 247 (274)
..++.+++.|.. ..+++-...-++|+... .++.... .+. .-+++.|+.|-
T Consensus 336 ~~d~~~~a~G~~-------------G~v~~s~D~G~tW~~~~~~~~~~~~ly--~v~f~~~~~g~~~G~ 389 (398)
T PLN00033 336 RSKKEAWAAGGS-------------GILLRSTDGGKSWKRDKGADNIAANLY--SVKFFDDKKGFVLGN 389 (398)
T ss_pred cCCCcEEEEECC-------------CcEEEeCCCCcceeEccccCCCCccee--EEEEcCCCceEEEeC
Confidence 346788888753 14666666777899864 2232222 333 23478888763
No 161
>PF15525 DUF4652: Domain of unknown function (DUF4652)
Probab=25.16 E-value=3.4e+02 Score=21.29 Aligned_cols=80 Identities=14% Similarity=0.236 Sum_probs=41.1
Q ss_pred cCceEEeC-CCCCeEec--CCCCCCCccceeeEEEe-CCEEEEEeccCCCCCCcccccccCceEEEEcCCCceEEeccCC
Q 024009 152 YDDVYMLD-DEMKWKVL--PSMPKPDSHIEFAWVLV-NNSIVIVGGTTEKHPTTKKMVLVGEIFQFNLNTLKWHVIGKLP 227 (274)
Q Consensus 152 ~~~~~~~d-~~~~W~~~--~~~~~~~~~~~~~~~~~-~~~l~v~GG~~~~~~~~~~~~~~~~i~~yd~~~~~W~~~~~~p 227 (274)
..++|.+| .+..|..+ .+.+..... --+.-+ +..|.|+=|........ -..+|.|++.++.-+.+-+..
T Consensus 87 iGkIYIkn~~~~~~~~L~i~~~~~k~sP--K~i~WiDD~~L~vIIG~a~GTvS~-----GGnLy~~nl~tg~~~~ly~~~ 159 (200)
T PF15525_consen 87 IGKIYIKNLNNNNWWSLQIDQNEEKYSP--KYIEWIDDNNLAVIIGYAHGTVSK-----GGNLYKYNLNTGNLTELYEWK 159 (200)
T ss_pred ceeEEEEecCCCceEEEEecCcccccCC--ceeEEecCCcEEEEEccccceEcc-----CCeEEEEEccCCceeEeeecc
Confidence 35778887 45555433 232211111 112333 44555544433322110 127999999999998887765
Q ss_pred CccceeeeEEE
Q 024009 228 YRVKTTLAGYW 238 (274)
Q Consensus 228 ~~~~~~~~~~~ 238 (274)
........+..
T Consensus 160 dkkqQVis~e~ 170 (200)
T PF15525_consen 160 DKKQQVISAEK 170 (200)
T ss_pred ccceeEEEEEE
Confidence 54444333333
No 162
>PF08950 DUF1861: Protein of unknown function (DUF1861); InterPro: IPR015045 This hypothetical protein, found in bacteria and in the eukaryote Leishmania, has no known function. ; PDB: 2B4W_A.
Probab=24.24 E-value=4.1e+02 Score=22.25 Aligned_cols=64 Identities=16% Similarity=0.211 Sum_probs=40.1
Q ss_pred EEeCCEEEEEeccCCCCC-CcccccccCceEEEEcC-CCceEEecc-CCCccceeeeEEEcCEEEEEccccCC
Q 024009 182 VLVNNSIVIVGGTTEKHP-TTKKMVLVGEIFQFNLN-TLKWHVIGK-LPYRVKTTLAGYWNGWLYFTSGQRDK 251 (274)
Q Consensus 182 ~~~~~~l~v~GG~~~~~~-~~~~~~~~~~i~~yd~~-~~~W~~~~~-~p~~~~~~~~~~~~~~l~~~GG~~~~ 251 (274)
...+++.+|.|=...... . ...+..|.-. .++|+.+.. +......+-.+.++++|++-|=...+
T Consensus 33 F~~~Gk~~IaGRVE~Rdswe------~S~V~fF~e~g~~~w~~v~~~~~~~LqDPF~t~I~gelifGGvev~~ 99 (298)
T PF08950_consen 33 FEYNGKTVIAGRVEKRDSWE------HSEVRFFEETGKDEWTPVEGAPVFQLQDPFVTRIQGELIFGGVEVFP 99 (298)
T ss_dssp EEETTEEEEEEEEE-TT-SS--------EEEEEEEEETTEEEE-TT---BS-EEEEEEEETTEEEEEEEEEE-
T ss_pred eeECCEEEEEeeeecCCchh------ccEEEEEEEeCCCeEEECCCcceEEecCcceeeECCEEEEeeEEEee
Confidence 567889999886554432 1 3378888766 899999866 44556678889999999854444333
No 163
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=23.58 E-value=5.9e+02 Score=23.56 Aligned_cols=29 Identities=10% Similarity=0.202 Sum_probs=21.6
Q ss_pred EEeCCEEEEEeccCCCCCCcccccccCceEEEEcCCCc
Q 024009 182 VLVNNSIVIVGGTTEKHPTTKKMVLVGEIFQFNLNTLK 219 (274)
Q Consensus 182 ~~~~~~l~v~GG~~~~~~~~~~~~~~~~i~~yd~~~~~ 219 (274)
-.-.++|+++.|+....+ +|+++|..+.+
T Consensus 319 fnp~g~ii~lAGFGNL~G---------~mEvwDv~n~K 347 (566)
T KOG2315|consen 319 FNPHGNIILLAGFGNLPG---------DMEVWDVPNRK 347 (566)
T ss_pred ECCCCCEEEEeecCCCCC---------ceEEEeccchh
Confidence 444688899988877544 89999987643
No 164
>PTZ00420 coronin; Provisional
Probab=23.52 E-value=6.2e+02 Score=23.73 Aligned_cols=27 Identities=7% Similarity=0.070 Sum_probs=16.7
Q ss_pred CCEEEEEeccCCCCCCcccccccCceEEEEcCCCceEEe
Q 024009 185 NNSIVIVGGTTEKHPTTKKMVLVGEIFQFNLNTLKWHVI 223 (274)
Q Consensus 185 ~~~l~v~GG~~~~~~~~~~~~~~~~i~~yd~~~~~W~~~ 223 (274)
.+.+|+.|.... .|..|+.....-..+
T Consensus 274 tg~l~lsGkGD~------------tIr~~e~~~~~~~~l 300 (568)
T PTZ00420 274 TGLIYLIGKGDG------------NCRYYQHSLGSIRKV 300 (568)
T ss_pred CCCEEEEEECCC------------eEEEEEccCCcEEee
Confidence 467777774322 678888766654444
No 165
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=23.37 E-value=4.7e+02 Score=22.34 Aligned_cols=38 Identities=24% Similarity=0.536 Sum_probs=23.9
Q ss_pred CCEEEEEeccCCCCCCcccccccCceEEEEcCCCceEEeccCC
Q 024009 185 NNSIVIVGGTTEKHPTTKKMVLVGEIFQFNLNTLKWHVIGKLP 227 (274)
Q Consensus 185 ~~~l~v~GG~~~~~~~~~~~~~~~~i~~yd~~~~~W~~~~~~p 227 (274)
...++.+|-.......+ ...||.|+-..++|..+.++|
T Consensus 183 ~~p~iAvgs~e~a~~~~-----~~~Iye~~e~~rKw~kva~L~ 220 (361)
T KOG2445|consen 183 HEPLIAVGSDEDAPHLN-----KVKIYEYNENGRKWLKVAELP 220 (361)
T ss_pred cCceEEEEcccCCcccc-----ceEEEEecCCcceeeeehhcC
Confidence 35677777655322211 125778888888999986664
No 166
>PTZ00421 coronin; Provisional
Probab=22.27 E-value=6.1e+02 Score=23.21 Aligned_cols=10 Identities=10% Similarity=0.448 Sum_probs=7.6
Q ss_pred ceEEEEcCCC
Q 024009 209 EIFQFNLNTL 218 (274)
Q Consensus 209 ~i~~yd~~~~ 218 (274)
.+..||+.+.
T Consensus 238 ~VklWDlr~~ 247 (493)
T PTZ00421 238 QIMLWDTRKM 247 (493)
T ss_pred eEEEEeCCCC
Confidence 7889998654
No 167
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=22.14 E-value=2.4e+02 Score=20.77 Aligned_cols=44 Identities=11% Similarity=0.163 Sum_probs=27.5
Q ss_pred cCceEEEEcCCCceEEeccCCCccceeeeEEE---cCEEEEEccccC
Q 024009 207 VGEIFQFNLNTLKWHVIGKLPYRVKTTLAGYW---NGWLYFTSGQRD 250 (274)
Q Consensus 207 ~~~i~~yd~~~~~W~~~~~~p~~~~~~~~~~~---~~~l~~~GG~~~ 250 (274)
.+.+..||..+++=-.-.++|.......+..+ ...+.++||.+.
T Consensus 72 ~t~llaYDV~~N~d~Fyke~~DGvn~i~~g~~~~~~~~l~ivGGncs 118 (136)
T PF14781_consen 72 QTSLLAYDVENNSDLFYKEVPDGVNAIVIGKLGDIPSPLVIVGGNCS 118 (136)
T ss_pred cceEEEEEcccCchhhhhhCccceeEEEEEecCCCCCcEEEECceEE
Confidence 34799999988862222345555444443333 568889999765
No 168
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=22.10 E-value=3.8e+02 Score=20.74 Aligned_cols=32 Identities=9% Similarity=0.236 Sum_probs=21.0
Q ss_pred eCCEEEEEeccCCCCCCcccccccCceEEEEcCCCceEEeccC
Q 024009 184 VNNSIVIVGGTTEKHPTTKKMVLVGEIFQFNLNTLKWHVIGKL 226 (274)
Q Consensus 184 ~~~~l~v~GG~~~~~~~~~~~~~~~~i~~yd~~~~~W~~~~~~ 226 (274)
-++++++++|...... ++.+||.. +.+.+...
T Consensus 110 P~G~~l~~~g~~n~~G---------~l~~wd~~--~~~~i~~~ 141 (194)
T PF08662_consen 110 PDGRFLVLAGFGNLNG---------DLEFWDVR--KKKKISTF 141 (194)
T ss_pred CCCCEEEEEEccCCCc---------EEEEEECC--CCEEeecc
Confidence 3678888888654332 79999988 44455443
No 169
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=22.00 E-value=8.5e+02 Score=24.81 Aligned_cols=31 Identities=10% Similarity=0.100 Sum_probs=26.2
Q ss_pred ceEEEEcCCCceEEeccCCCccceeeeEEEc
Q 024009 209 EIFQFNLNTLKWHVIGKLPYRVKTTLAGYWN 239 (274)
Q Consensus 209 ~i~~yd~~~~~W~~~~~~p~~~~~~~~~~~~ 239 (274)
..++|+++.++...+..=|.+|+-.++..++
T Consensus 999 ~~~~y~~~~n~l~~fadD~~pR~Vt~~~~lD 1029 (1205)
T KOG1898|consen 999 HFVRYRREDNQLIVFADDPVPRHVTALELLD 1029 (1205)
T ss_pred EEEEEecCCCeEEEEeCCCccceeeEEEEec
Confidence 6889999999998888889999877777665
No 170
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=21.76 E-value=6.4e+02 Score=23.28 Aligned_cols=91 Identities=14% Similarity=0.221 Sum_probs=46.0
Q ss_pred eEEeCCEEEEEccCCCCCCCCCCCCccccccCceeecCceEEeC-CC---CCeEecCCCCCCCccceeeEEEeCCEEEEE
Q 024009 116 CVVVDDRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYDDVYMLD-DE---MKWKVLPSMPKPDSHIEFAWVLVNNSIVIV 191 (274)
Q Consensus 116 ~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d-~~---~~W~~~~~~~~~~~~~~~~~~~~~~~l~v~ 191 (274)
...+++++++.-|.++. -.+|.+. .+ ..|+-++.. ...-.| ...-+++|++.
T Consensus 371 ~FS~dg~~LlSRg~D~t--------------------LKvWDLrq~kkpL~~~tgL~t~---~~~tdc-~FSPd~kli~T 426 (641)
T KOG0772|consen 371 SFSYDGNYLLSRGFDDT--------------------LKVWDLRQFKKPLNVRTGLPTP---FPGTDC-CFSPDDKLILT 426 (641)
T ss_pred EeccccchhhhccCCCc--------------------eeeeeccccccchhhhcCCCcc---CCCCcc-ccCCCceEEEe
Confidence 44567777777776543 3466664 22 234444433 222123 24556777777
Q ss_pred eccCCCCCCcccccccCceEEEEcCCCceEEeccCCCccceeeeEEE
Q 024009 192 GGTTEKHPTTKKMVLVGEIFQFNLNTLKWHVIGKLPYRVKTTLAGYW 238 (274)
Q Consensus 192 GG~~~~~~~~~~~~~~~~i~~yd~~~~~W~~~~~~p~~~~~~~~~~~ 238 (274)
|-...+.. .-..+++||.. +...+..++..-.+...+..
T Consensus 427 GtS~~~~~------~~g~L~f~d~~--t~d~v~ki~i~~aSvv~~~W 465 (641)
T KOG0772|consen 427 GTSAPNGM------TAGTLFFFDRM--TLDTVYKIDISTASVVRCLW 465 (641)
T ss_pred cccccCCC------CCceEEEEecc--ceeeEEEecCCCceEEEEee
Confidence 64322221 12367888754 45555566655444333333
No 171
>PLN00181 protein SPA1-RELATED; Provisional
Probab=21.57 E-value=7.6e+02 Score=24.05 Aligned_cols=22 Identities=9% Similarity=0.394 Sum_probs=14.7
Q ss_pred CCEEEEEeccCCCCCCcccccccCceEEEEcCCC
Q 024009 185 NNSIVIVGGTTEKHPTTKKMVLVGEIFQFNLNTL 218 (274)
Q Consensus 185 ~~~l~v~GG~~~~~~~~~~~~~~~~i~~yd~~~~ 218 (274)
++.+++.|+..+ .|..||+.+.
T Consensus 629 ~g~~latgs~dg------------~I~iwD~~~~ 650 (793)
T PLN00181 629 SGRSLAFGSADH------------KVYYYDLRNP 650 (793)
T ss_pred CCCEEEEEeCCC------------eEEEEECCCC
Confidence 466777776432 7888888654
No 172
>PF05262 Borrelia_P83: Borrelia P83/100 protein; InterPro: IPR007926 This family consists of several Borrelia P83/P100 antigen proteins.
Probab=20.80 E-value=6.3e+02 Score=23.14 Aligned_cols=82 Identities=10% Similarity=0.091 Sum_probs=44.5
Q ss_pred cCceEEeC-CCCCeEecCCCCCCCccceeeEEEeCCEEEEEeccCCCCCCcccccccCceEEEEcCCCceEEeccCCCcc
Q 024009 152 YDDVYMLD-DEMKWKVLPSMPKPDSHIEFAWVLVNNSIVIVGGTTEKHPTTKKMVLVGEIFQFNLNTLKWHVIGKLPYRV 230 (274)
Q Consensus 152 ~~~~~~~d-~~~~W~~~~~~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~i~~yd~~~~~W~~~~~~p~~~ 230 (274)
++.+..+| .++.=..-.++...|++ .+....+.+++++|..+... + .+...|+.+-+-..-+..+..+
T Consensus 374 ls~LvllD~~tg~~l~~S~~~~Ir~r---~~~~~~~~~vaI~g~~G~~~-------i-kLvlid~~tLev~kes~~~i~~ 442 (489)
T PF05262_consen 374 LSELVLLDSDTGDTLKRSPVNGIRGR---TFYEREDDLVAIAGCSGNAA-------I-KLVLIDPETLEVKKESEDEISW 442 (489)
T ss_pred ceeEEEEeCCCCceecccccceeccc---eeEEcCCCEEEEeccCCchh-------e-EEEecCcccceeeeeccccccc
Confidence 56778887 55554444455555554 34667788888888744432 1 2233355555443333444333
Q ss_pred ceeeeEEEcCEEEEE
Q 024009 231 KTTLAGYWNGWLYFT 245 (274)
Q Consensus 231 ~~~~~~~~~~~l~~~ 245 (274)
.+ .+.+.++.+|++
T Consensus 443 ~S-~l~~~~~~iyaV 456 (489)
T PF05262_consen 443 QS-SLIVDGQMIYAV 456 (489)
T ss_pred cC-ceEEcCCeEEEE
Confidence 33 444456677744
No 173
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=20.69 E-value=3.9e+02 Score=24.62 Aligned_cols=56 Identities=18% Similarity=0.127 Sum_probs=31.9
Q ss_pred eeEEEeCCEEEEEeccCCCCCCcccccccCceEEEEcCCCceEEeccCCCccceeeeEEE--cCEEEEEc
Q 024009 179 FAWVLVNNSIVIVGGTTEKHPTTKKMVLVGEIFQFNLNTLKWHVIGKLPYRVKTTLAGYW--NGWLYFTS 246 (274)
Q Consensus 179 ~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~i~~yd~~~~~W~~~~~~p~~~~~~~~~~~--~~~l~~~G 246 (274)
+.++..++..+++||..+ .++.|.++.+.-.+...+-..|...+.+.+ +++.++.|
T Consensus 448 ~vAv~~~~~~vaVGG~Dg------------kvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~yla~~ 505 (603)
T KOG0318|consen 448 AVAVSPDGSEVAVGGQDG------------KVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGAYLAAG 505 (603)
T ss_pred eEEEcCCCCEEEEecccc------------eEEEEEecCCcccceeeeecccCCceEEEECCCCcEEEEe
Confidence 444556678888888755 588888887765544344444433333333 34444443
No 174
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=20.22 E-value=8.1e+02 Score=23.87 Aligned_cols=31 Identities=29% Similarity=0.386 Sum_probs=22.2
Q ss_pred EEeC--CEEEEEeccCCCCCCcccccccCceEEEEcCCCceEEe
Q 024009 182 VLVN--NSIVIVGGTTEKHPTTKKMVLVGEIFQFNLNTLKWHVI 223 (274)
Q Consensus 182 ~~~~--~~l~v~GG~~~~~~~~~~~~~~~~i~~yd~~~~~W~~~ 223 (274)
+..+ |.|.+.|+...- +|+.++.++.+-..+
T Consensus 441 vavD~sGelV~AG~~d~F-----------~IfvWS~qTGqllDi 473 (893)
T KOG0291|consen 441 VAVDPSGELVCAGAQDSF-----------EIFVWSVQTGQLLDI 473 (893)
T ss_pred EEEcCCCCEEEeeccceE-----------EEEEEEeecCeeeeh
Confidence 4444 888888875331 788999999887664
Done!