Query 024010
Match_columns 274
No_of_seqs 331 out of 1482
Neff 5.7
Searched_HMMs 46136
Date Fri Mar 29 08:16:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024010.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024010hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd03041 GST_N_2GST_N GST_N fam 99.8 4.1E-19 8.8E-24 133.3 9.0 76 141-217 2-77 (77)
2 cd03045 GST_N_Delta_Epsilon GS 99.7 1.5E-17 3.3E-22 122.3 9.0 73 141-215 1-74 (74)
3 PF13417 GST_N_3: Glutathione 99.7 1.8E-17 3.9E-22 123.6 8.4 73 143-219 1-73 (75)
4 cd03052 GST_N_GDAP1 GST_N fami 99.7 2.4E-17 5.1E-22 123.2 8.7 72 141-214 1-73 (73)
5 cd03059 GST_N_SspA GST_N famil 99.7 3.6E-17 7.7E-22 119.9 9.1 73 141-217 1-73 (73)
6 cd03051 GST_N_GTT2_like GST_N 99.7 1.1E-16 2.3E-21 116.8 8.8 73 141-214 1-74 (74)
7 PRK15113 glutathione S-transfe 99.7 2E-16 4.4E-21 139.2 11.7 98 140-239 5-110 (214)
8 cd03056 GST_N_4 GST_N family, 99.7 1.6E-16 3.4E-21 116.0 8.9 72 141-214 1-73 (73)
9 cd03053 GST_N_Phi GST_N family 99.7 1.9E-16 4.1E-21 117.2 9.2 74 141-216 2-76 (76)
10 cd03048 GST_N_Ure2p_like GST_N 99.7 2.8E-16 6E-21 118.2 9.8 78 141-219 2-81 (81)
11 cd03050 GST_N_Theta GST_N fami 99.7 2.4E-16 5.1E-21 117.2 9.1 75 141-217 1-76 (76)
12 cd03058 GST_N_Tau GST_N family 99.7 2.3E-16 5E-21 116.7 9.0 73 141-217 1-74 (74)
13 PRK09481 sspA stringent starva 99.7 4.6E-16 1E-20 136.6 11.1 83 140-226 10-93 (211)
14 cd03040 GST_N_mPGES2 GST_N fam 99.7 5.7E-16 1.2E-20 115.3 9.0 75 140-218 1-77 (77)
15 PLN02473 glutathione S-transfe 99.7 7.8E-16 1.7E-20 134.5 11.3 95 139-235 1-100 (214)
16 cd03037 GST_N_GRX2 GST_N famil 99.7 3.8E-16 8.2E-21 114.7 7.8 71 141-215 1-71 (71)
17 COG0625 Gst Glutathione S-tran 99.7 6.4E-16 1.4E-20 135.2 10.6 85 141-226 1-86 (211)
18 cd03060 GST_N_Omega_like GST_N 99.6 8.8E-16 1.9E-20 113.0 8.9 69 142-213 2-70 (71)
19 cd03057 GST_N_Beta GST_N famil 99.6 1.3E-15 2.8E-20 113.4 9.1 76 141-218 1-77 (77)
20 cd03044 GST_N_EF1Bgamma GST_N 99.6 1.1E-15 2.4E-20 113.8 8.8 73 142-215 2-74 (75)
21 KOG0868 Glutathione S-transfer 99.6 6.6E-16 1.4E-20 134.3 7.7 101 138-240 3-107 (217)
22 cd03047 GST_N_2 GST_N family, 99.6 1.9E-15 4.2E-20 111.6 8.8 72 141-214 1-73 (73)
23 cd03076 GST_N_Pi GST_N family, 99.6 1.5E-15 3.2E-20 112.8 7.3 73 140-216 1-73 (73)
24 cd03055 GST_N_Omega GST_N fami 99.6 3.7E-15 8E-20 115.0 9.7 76 136-214 14-89 (89)
25 cd03042 GST_N_Zeta GST_N famil 99.6 2.8E-15 6E-20 109.6 8.5 72 141-214 1-73 (73)
26 cd03046 GST_N_GTT1_like GST_N 99.6 3.9E-15 8.6E-20 109.8 9.1 75 141-218 1-76 (76)
27 cd03061 GST_N_CLIC GST_N famil 99.6 2.9E-15 6.3E-20 117.6 8.6 71 147-221 20-90 (91)
28 PF13409 GST_N_2: Glutathione 99.6 2.5E-15 5.4E-20 111.1 7.0 68 148-216 1-70 (70)
29 cd03049 GST_N_3 GST_N family, 99.6 4.9E-15 1.1E-19 109.2 8.5 71 141-214 1-73 (73)
30 PRK13972 GSH-dependent disulfi 99.6 9.1E-15 2E-19 128.4 11.5 98 141-240 2-106 (215)
31 PLN02395 glutathione S-transfe 99.6 1.3E-14 2.9E-19 126.6 11.6 95 139-236 1-100 (215)
32 cd03038 GST_N_etherase_LigE GS 99.6 5.9E-15 1.3E-19 112.0 8.1 69 147-218 14-84 (84)
33 KOG0867 Glutathione S-transfer 99.6 9.2E-15 2E-19 131.2 10.4 106 139-246 1-111 (226)
34 cd00570 GST_N_family Glutathio 99.6 1.3E-14 2.8E-19 102.3 8.8 71 141-214 1-71 (71)
35 cd03039 GST_N_Sigma_like GST_N 99.6 5E-15 1.1E-19 109.0 6.6 72 141-215 1-72 (72)
36 cd03080 GST_N_Metaxin_like GST 99.6 1E-14 2.2E-19 108.7 8.1 67 141-218 2-75 (75)
37 PRK10387 glutaredoxin 2; Provi 99.6 1.7E-14 3.8E-19 125.3 10.4 77 141-222 1-78 (210)
38 PRK11752 putative S-transferas 99.5 6.1E-14 1.3E-18 128.4 11.3 93 140-234 44-146 (264)
39 TIGR02182 GRXB Glutaredoxin, G 99.5 7.7E-14 1.7E-18 122.9 10.4 76 142-222 1-77 (209)
40 TIGR01262 maiA maleylacetoacet 99.5 1.1E-13 2.4E-18 120.2 9.5 92 142-235 1-96 (210)
41 PF02798 GST_N: Glutathione S- 99.5 1.1E-13 2.3E-18 103.9 7.9 73 140-215 2-76 (76)
42 cd03077 GST_N_Alpha GST_N fami 99.5 2.8E-13 6.1E-18 102.4 9.1 72 140-218 1-77 (79)
43 PLN02378 glutathione S-transfe 99.5 1.3E-13 2.9E-18 121.6 8.4 72 145-220 16-87 (213)
44 cd03075 GST_N_Mu GST_N family, 99.5 2.1E-13 4.5E-18 104.0 8.3 74 142-217 2-82 (82)
45 TIGR02190 GlrX-dom Glutaredoxi 99.5 2.9E-13 6.2E-18 102.3 8.8 74 137-214 6-79 (79)
46 cd03043 GST_N_1 GST_N family, 99.5 2.8E-13 6E-18 100.8 8.5 68 145-214 6-73 (73)
47 PRK10357 putative glutathione 99.5 3E-13 6.4E-18 117.2 10.0 83 141-226 1-84 (202)
48 PRK10542 glutathionine S-trans 99.5 3E-13 6.5E-18 116.7 9.9 78 141-220 1-80 (201)
49 cd03054 GST_N_Metaxin GST_N fa 99.5 2.4E-13 5.1E-18 100.2 7.8 65 141-216 1-72 (72)
50 TIGR00862 O-ClC intracellular 99.5 2E-13 4.3E-18 124.0 8.9 74 146-223 16-89 (236)
51 KOG0406 Glutathione S-transfer 99.5 4.6E-13 9.9E-18 121.1 11.1 85 139-227 8-95 (231)
52 cd03029 GRX_hybridPRX5 Glutare 99.4 1.3E-12 2.8E-17 96.4 8.8 71 140-214 2-72 (72)
53 PLN02817 glutathione dehydroge 99.4 1.6E-12 3.4E-17 119.8 9.1 71 146-220 70-140 (265)
54 PRK10638 glutaredoxin 3; Provi 99.4 2.4E-12 5.3E-17 97.9 8.3 75 138-215 1-75 (83)
55 PTZ00057 glutathione s-transfe 99.3 3.3E-12 7.2E-17 111.8 8.4 79 139-219 3-85 (205)
56 PRK11200 grxA glutaredoxin 1; 99.3 3E-11 6.5E-16 92.1 8.5 77 139-218 1-84 (85)
57 cd03027 GRX_DEP Glutaredoxin ( 99.2 2.4E-11 5.1E-16 90.1 7.5 69 140-211 2-70 (73)
58 COG0695 GrxC Glutaredoxin and 99.2 3.8E-11 8.1E-16 91.8 8.0 75 139-215 1-76 (80)
59 COG2999 GrxB Glutaredoxin 2 [P 99.2 1.4E-11 3.1E-16 107.3 6.1 76 141-220 1-76 (215)
60 TIGR02183 GRXA Glutaredoxin, G 99.2 6.9E-11 1.5E-15 90.9 8.6 75 141-218 2-83 (86)
61 cd03418 GRX_GRXb_1_3_like Glut 99.2 6.3E-11 1.4E-15 87.3 7.8 72 140-214 1-73 (75)
62 cd02066 GRX_family Glutaredoxi 99.2 7.1E-11 1.5E-15 84.3 7.8 70 140-212 1-70 (72)
63 KOG4420 Uncharacterized conser 99.2 3.6E-11 7.9E-16 110.1 6.1 82 137-220 23-105 (325)
64 PHA03050 glutaredoxin; Provisi 99.1 2.8E-10 6.1E-15 91.8 8.0 71 139-211 13-88 (108)
65 TIGR02181 GRX_bact Glutaredoxi 99.1 3.4E-10 7.3E-15 84.7 7.2 72 141-215 1-72 (79)
66 TIGR02196 GlrX_YruB Glutaredox 99.1 5.1E-10 1.1E-14 80.5 7.6 71 140-213 1-73 (74)
67 TIGR02189 GlrX-like_plant Glut 99.1 5.7E-10 1.2E-14 88.4 7.7 75 138-214 7-83 (99)
68 TIGR00365 monothiol glutaredox 99.0 1E-09 2.3E-14 86.6 8.3 74 138-214 11-89 (97)
69 cd03079 GST_N_Metaxin2 GST_N f 99.0 1.1E-09 2.4E-14 83.0 7.4 60 147-216 15-74 (74)
70 TIGR02200 GlrX_actino Glutared 99.0 2E-09 4.3E-14 78.9 8.4 73 140-214 1-76 (77)
71 PRK10329 glutaredoxin-like pro 99.0 1.3E-09 2.7E-14 83.5 7.3 71 139-213 1-73 (81)
72 cd03028 GRX_PICOT_like Glutare 99.0 1.8E-09 3.9E-14 83.7 8.1 74 138-214 7-85 (90)
73 cd03419 GRX_GRXh_1_2_like Glut 99.0 1.6E-09 3.5E-14 80.7 7.6 74 140-215 1-76 (82)
74 PF00462 Glutaredoxin: Glutare 98.9 1.2E-09 2.6E-14 77.9 4.3 60 141-203 1-60 (60)
75 cd02976 NrdH NrdH-redoxin (Nrd 98.9 3.7E-09 8E-14 75.9 6.8 63 140-205 1-63 (73)
76 TIGR02180 GRX_euk Glutaredoxin 98.9 6.6E-09 1.4E-13 77.5 7.4 73 141-215 1-77 (84)
77 TIGR02194 GlrX_NrdH Glutaredox 98.9 4.4E-09 9.5E-14 77.8 6.2 54 141-196 1-54 (72)
78 PRK10824 glutaredoxin-4; Provi 98.8 1E-08 2.3E-13 83.8 7.8 74 138-214 14-92 (115)
79 KOG3029 Glutathione S-transfer 98.8 2.2E-08 4.7E-13 93.0 7.6 74 138-217 88-161 (370)
80 KOG1695 Glutathione S-transfer 98.7 2.8E-08 6.1E-13 88.9 7.9 83 138-224 1-84 (206)
81 cd03078 GST_N_Metaxin1_like GS 98.6 2.1E-07 4.5E-12 69.9 7.9 58 148-216 15-72 (73)
82 cd03031 GRX_GRX_like Glutaredo 98.6 2.6E-07 5.6E-12 78.6 8.0 72 140-214 1-82 (147)
83 PRK12759 bifunctional gluaredo 98.5 2.9E-07 6.2E-12 89.9 8.3 70 138-211 1-79 (410)
84 PTZ00062 glutaredoxin; Provisi 98.5 4.2E-07 9E-12 81.2 8.2 74 138-214 112-190 (204)
85 KOG1422 Intracellular Cl- chan 98.5 4.8E-07 1E-11 80.8 8.4 74 147-224 19-92 (221)
86 KOG1752 Glutaredoxin and relat 98.5 7.8E-07 1.7E-11 71.6 7.9 75 138-214 13-89 (104)
87 PLN02907 glutamate-tRNA ligase 98.2 6E-06 1.3E-10 86.0 10.4 71 139-225 1-72 (722)
88 KOG4244 Failed axon connection 98.0 1.7E-05 3.6E-10 73.3 8.1 75 139-224 44-126 (281)
89 cd02973 TRX_GRX_like Thioredox 98.0 2.3E-05 4.9E-10 56.4 6.5 58 140-204 2-64 (67)
90 cd03036 ArsC_like Arsenate Red 98.0 8.6E-06 1.9E-10 65.6 4.3 47 141-188 1-47 (111)
91 cd02977 ArsC_family Arsenate R 97.8 4.1E-05 8.9E-10 60.6 5.5 47 141-188 1-47 (105)
92 cd03030 GRX_SH3BGR Glutaredoxi 97.8 0.00014 3E-09 57.2 7.9 70 141-213 2-81 (92)
93 PRK01655 spxA transcriptional 97.7 7.7E-05 1.7E-09 62.0 5.3 43 141-184 2-44 (131)
94 COG0678 AHP1 Peroxiredoxin [Po 97.6 1.3E-05 2.7E-10 68.6 0.1 38 89-135 100-137 (165)
95 cd03032 ArsC_Spx Arsenate Redu 97.6 0.00012 2.7E-09 59.1 5.6 43 141-184 2-44 (115)
96 TIGR01617 arsC_related transcr 97.6 0.00011 2.3E-09 59.6 4.9 43 141-184 1-43 (117)
97 PRK13344 spxA transcriptional 97.5 0.00023 5E-09 59.3 5.9 43 141-184 2-44 (132)
98 COG0278 Glutaredoxin-related p 97.5 0.00044 9.5E-09 55.5 7.0 73 138-213 14-92 (105)
99 cd03035 ArsC_Yffb Arsenate Red 97.5 0.00024 5.2E-09 56.9 5.5 43 141-184 1-43 (105)
100 PRK12559 transcriptional regul 97.4 0.00027 5.8E-09 58.9 5.8 43 141-184 2-44 (131)
101 cd03033 ArsC_15kD Arsenate Red 97.4 0.0003 6.5E-09 57.2 5.7 45 140-185 1-45 (113)
102 PRK10026 arsenate reductase; P 97.3 0.00052 1.1E-08 58.1 5.8 46 138-184 1-46 (141)
103 COG4545 Glutaredoxin-related p 97.3 0.00087 1.9E-08 51.2 6.1 64 140-204 3-77 (85)
104 COG1393 ArsC Arsenate reductas 97.2 0.00081 1.8E-08 55.2 5.7 46 139-185 1-46 (117)
105 TIGR00412 redox_disulf_2 small 97.1 0.0033 7.1E-08 47.0 7.9 56 139-203 1-60 (76)
106 TIGR01616 nitro_assoc nitrogen 97.0 0.0014 3E-08 54.4 5.8 44 140-184 2-45 (126)
107 PRK10853 putative reductase; P 97.0 0.0015 3.3E-08 53.5 5.3 44 141-185 2-45 (118)
108 TIGR00411 redox_disulf_1 small 96.9 0.011 2.4E-07 43.3 8.9 54 140-196 2-59 (82)
109 cd03034 ArsC_ArsC Arsenate Red 96.8 0.0028 6.2E-08 51.1 5.5 43 141-184 1-43 (112)
110 TIGR00014 arsC arsenate reduct 96.8 0.0029 6.3E-08 51.2 5.5 43 141-184 1-43 (114)
111 PF05768 DUF836: Glutaredoxin- 96.8 0.0086 1.9E-07 45.3 7.8 51 140-196 1-55 (81)
112 PF10568 Tom37: Outer mitochon 96.6 0.0095 2.1E-07 44.8 6.9 57 148-214 13-72 (72)
113 PF13192 Thioredoxin_3: Thiore 96.6 0.012 2.6E-07 43.9 7.3 58 139-205 1-62 (76)
114 cd01659 TRX_superfamily Thiore 96.5 0.0077 1.7E-07 39.4 5.2 54 141-196 1-59 (69)
115 KOG0911 Glutaredoxin-related p 96.4 0.0091 2E-07 54.2 6.7 74 138-214 138-216 (227)
116 cd03026 AhpF_NTD_C TRX-GRX-lik 96.4 0.012 2.6E-07 45.6 6.3 59 139-204 14-77 (89)
117 PHA02125 thioredoxin-like prot 95.5 0.031 6.7E-07 41.4 5.1 51 141-196 2-52 (75)
118 PF03960 ArsC: ArsC family; I 95.2 0.033 7.3E-07 44.4 4.6 39 144-183 1-39 (110)
119 COG0435 ECM4 Predicted glutath 95.2 0.032 6.9E-07 52.4 5.0 116 139-255 50-203 (324)
120 cd02949 TRX_NTR TRX domain, no 94.7 0.17 3.7E-06 38.8 7.3 59 140-203 16-80 (97)
121 PF04908 SH3BGR: SH3-binding, 94.7 0.11 2.3E-06 41.6 6.3 73 139-214 1-88 (99)
122 PF11287 DUF3088: Protein of u 94.4 0.17 3.7E-06 41.4 7.0 69 148-220 23-110 (112)
123 TIGR01295 PedC_BrcD bacterioci 93.9 0.32 6.9E-06 39.7 7.7 62 140-201 26-101 (122)
124 PRK15317 alkyl hydroperoxide r 93.9 0.081 1.8E-06 52.9 4.9 74 138-218 117-199 (517)
125 cd02947 TRX_family TRX family; 93.8 0.33 7.2E-06 34.8 6.9 57 140-201 13-74 (93)
126 KOG2903 Predicted glutathione 93.6 0.32 6.9E-06 45.6 7.9 116 139-255 36-201 (319)
127 TIGR03140 AhpF alkyl hydropero 93.4 0.058 1.3E-06 53.9 3.0 72 138-216 118-198 (515)
128 TIGR03143 AhpF_homolog putativ 93.0 0.35 7.6E-06 48.9 7.9 60 138-204 477-541 (555)
129 cd02975 PfPDO_like_N Pyrococcu 92.9 0.13 2.9E-06 41.1 3.7 52 140-196 24-81 (113)
130 TIGR02187 GlrX_arch Glutaredox 92.8 0.22 4.9E-06 44.1 5.5 71 139-214 135-213 (215)
131 KOG2824 Glutaredoxin-related p 89.5 0.54 1.2E-05 44.0 4.7 74 138-214 130-213 (281)
132 cd02953 DsbDgamma DsbD gamma f 88.6 1.2 2.6E-05 34.2 5.4 55 140-195 14-77 (104)
133 PF00085 Thioredoxin: Thioredo 88.6 0.37 8.1E-06 36.1 2.5 72 140-216 20-103 (103)
134 cd02984 TRX_PICOT TRX domain, 87.8 0.76 1.6E-05 34.5 3.8 59 141-202 18-80 (97)
135 TIGR01068 thioredoxin thioredo 87.5 1.2 2.5E-05 33.2 4.6 70 141-215 18-99 (101)
136 PTZ00051 thioredoxin; Provisio 87.2 0.76 1.7E-05 34.6 3.5 57 140-201 21-82 (98)
137 KOG3027 Mitochondrial outer me 87.0 2.2 4.8E-05 38.9 6.8 77 140-229 28-105 (257)
138 PRK09381 trxA thioredoxin; Pro 86.4 6 0.00013 30.4 8.3 61 140-203 24-88 (109)
139 cd03020 DsbA_DsbC_DsbG DsbA fa 86.4 1.3 2.9E-05 38.4 5.0 36 138-173 78-115 (197)
140 cd02950 TxlA TRX-like protein 86.3 8.2 0.00018 32.0 9.5 82 140-224 23-117 (142)
141 PRK10877 protein disulfide iso 86.2 1 2.3E-05 40.7 4.4 35 139-173 109-146 (232)
142 TIGR01126 pdi_dom protein disu 85.5 1.8 4E-05 32.3 4.8 52 139-195 15-74 (102)
143 KOG3028 Translocase of outer m 85.4 8.7 0.00019 36.7 10.1 59 148-216 16-74 (313)
144 PRK11657 dsbG disulfide isomer 85.0 1.7 3.8E-05 39.8 5.2 32 140-171 120-155 (251)
145 PF04134 DUF393: Protein of un 84.2 2.2 4.8E-05 33.6 4.9 69 143-216 1-77 (114)
146 cd02951 SoxW SoxW family; SoxW 84.0 5.2 0.00011 31.7 7.0 57 139-195 16-89 (125)
147 COG3011 Predicted thiol-disulf 83.7 10 0.00023 32.1 8.9 76 140-217 9-87 (137)
148 PRK10996 thioredoxin 2; Provis 83.6 9.1 0.0002 31.5 8.6 75 139-216 54-138 (139)
149 cd02989 Phd_like_TxnDC9 Phosdu 83.5 1.4 3E-05 35.2 3.5 61 139-204 24-89 (113)
150 TIGR02187 GlrX_arch Glutaredox 82.6 4.6 0.0001 35.6 6.8 76 139-217 21-111 (215)
151 cd02996 PDI_a_ERp44 PDIa famil 82.6 6.1 0.00013 30.5 6.8 51 140-195 21-83 (108)
152 cd02959 ERp19 Endoplasmic reti 82.1 4.1 8.9E-05 32.8 5.8 60 141-203 23-90 (117)
153 cd02963 TRX_DnaJ TRX domain, D 81.5 2.1 4.4E-05 33.8 3.7 70 140-214 27-109 (111)
154 cd02994 PDI_a_TMX PDIa family, 81.1 13 0.00029 28.0 8.1 59 140-201 19-82 (101)
155 cd02961 PDI_a_family Protein D 79.8 2.2 4.9E-05 31.1 3.3 54 139-195 17-76 (101)
156 cd02997 PDI_a_PDIR PDIa family 79.4 10 0.00022 28.4 6.9 60 139-201 19-86 (104)
157 PF09635 MetRS-N: MetRS-N bind 79.4 1.2 2.7E-05 36.9 1.8 30 190-219 35-64 (122)
158 cd02985 TRX_CDSP32 TRX family, 79.2 9.7 0.00021 29.4 6.9 60 141-202 19-83 (103)
159 PHA02278 thioredoxin-like prot 79.0 10 0.00022 30.0 7.0 62 141-203 18-85 (103)
160 cd02948 TRX_NDPK TRX domain, T 78.8 3.5 7.7E-05 31.8 4.2 58 140-201 20-82 (102)
161 PF13098 Thioredoxin_2: Thiore 78.4 2 4.3E-05 33.1 2.7 21 140-160 8-28 (112)
162 KOG2501 Thioredoxin, nucleored 77.2 7.6 0.00017 33.6 6.1 75 140-224 35-118 (157)
163 cd03000 PDI_a_TMX3 PDIa family 77.2 3.7 8.1E-05 31.5 4.0 55 139-196 17-78 (104)
164 cd02955 SSP411 TRX domain, SSP 76.5 11 0.00023 31.0 6.7 66 141-206 19-97 (124)
165 cd02972 DsbA_family DsbA famil 76.4 3.3 7.1E-05 30.0 3.3 33 141-173 1-39 (98)
166 COG3019 Predicted metal-bindin 75.3 7.8 0.00017 33.1 5.6 73 138-217 25-104 (149)
167 PTZ00443 Thioredoxin domain-co 73.9 7.9 0.00017 35.1 5.7 77 140-219 55-141 (224)
168 cd02952 TRP14_like Human TRX-r 73.7 14 0.0003 30.3 6.6 60 147-206 38-106 (119)
169 cd02956 ybbN ybbN protein fami 72.5 4.6 0.0001 30.2 3.3 58 141-201 16-77 (96)
170 cd02954 DIM1 Dim1 family; Dim1 72.4 4.6 0.0001 33.0 3.5 57 141-202 18-80 (114)
171 cd02957 Phd_like Phosducin (Ph 72.2 4.2 9.1E-05 32.0 3.1 57 141-203 28-89 (113)
172 cd02999 PDI_a_ERp44_like PDIa 71.2 3.5 7.6E-05 32.0 2.4 52 140-195 21-77 (100)
173 PF14595 Thioredoxin_9: Thiore 70.0 1.5 3.3E-05 36.3 0.1 57 138-196 42-103 (129)
174 cd03023 DsbA_Com1_like DsbA fa 69.7 7 0.00015 31.2 4.0 35 139-173 7-46 (154)
175 cd02993 PDI_a_APS_reductase PD 69.7 16 0.00034 28.4 5.9 54 138-195 22-83 (109)
176 PRK00293 dipZ thiol:disulfide 68.9 25 0.00054 36.1 8.6 74 141-215 478-568 (571)
177 PRK03147 thiol-disulfide oxido 68.3 49 0.0011 27.2 9.0 20 140-159 64-83 (173)
178 PF13728 TraF: F plasmid trans 67.5 29 0.00063 31.1 7.9 112 89-200 63-195 (215)
179 cd03003 PDI_a_ERdj5_N PDIa fam 67.2 8 0.00017 29.4 3.7 51 140-195 21-77 (101)
180 PF01323 DSBA: DSBA-like thior 66.6 8.1 0.00017 32.5 3.9 34 140-173 1-39 (193)
181 cd03002 PDI_a_MPD1_like PDI fa 65.9 25 0.00055 26.6 6.3 53 140-195 21-79 (109)
182 PRK13728 conjugal transfer pro 65.4 16 0.00034 32.3 5.5 31 141-171 73-107 (181)
183 cd03004 PDI_a_ERdj5_C PDIa fam 65.2 6.1 0.00013 30.1 2.7 51 140-195 22-78 (104)
184 cd03009 TryX_like_TryX_NRX Try 65.1 18 0.0004 28.6 5.6 20 141-160 22-41 (131)
185 TIGR02661 MauD methylamine deh 64.2 29 0.00063 30.0 7.1 29 141-169 78-110 (189)
186 PTZ00102 disulphide isomerase; 64.1 38 0.00083 32.9 8.6 78 138-220 50-141 (477)
187 cd02998 PDI_a_ERp38 PDIa famil 63.6 6.3 0.00014 29.5 2.4 54 140-195 21-80 (105)
188 TIGR00385 dsbE periplasmic pro 63.4 30 0.00065 29.3 6.9 29 141-169 67-98 (173)
189 cd03005 PDI_a_ERp46 PDIa famil 62.3 6.9 0.00015 29.3 2.4 53 140-195 19-78 (102)
190 cd03011 TlpA_like_ScsD_MtbDsbE 62.3 21 0.00046 27.7 5.4 22 140-161 23-44 (123)
191 TIGR02740 TraF-like TraF-like 61.6 32 0.00069 31.9 7.2 106 90-195 110-234 (271)
192 cd03019 DsbA_DsbA DsbA family, 61.5 12 0.00027 30.9 4.1 35 138-172 16-56 (178)
193 cd03010 TlpA_like_DsbE TlpA-li 61.1 42 0.00092 26.3 7.0 21 141-161 29-49 (127)
194 cd02967 mauD Methylamine utili 60.6 12 0.00026 28.7 3.6 56 141-196 25-84 (114)
195 TIGR01130 ER_PDI_fam protein d 59.6 47 0.001 31.7 8.2 77 139-220 20-112 (462)
196 cd03001 PDI_a_P5 PDIa family, 57.4 10 0.00022 28.4 2.6 51 140-195 21-77 (103)
197 cd02970 PRX_like2 Peroxiredoxi 57.0 26 0.00056 27.9 5.1 51 146-197 33-88 (149)
198 cd02965 HyaE HyaE family; HyaE 56.7 13 0.00027 30.3 3.2 64 138-204 28-97 (111)
199 COG2143 Thioredoxin-related pr 56.6 36 0.00078 29.9 6.1 77 140-217 45-152 (182)
200 cd02987 Phd_like_Phd Phosducin 56.3 14 0.0003 32.0 3.6 59 141-203 87-148 (175)
201 cd03022 DsbA_HCCA_Iso DsbA fam 56.2 14 0.00031 31.0 3.6 31 141-171 1-35 (192)
202 cd03021 DsbA_GSTK DsbA family, 55.8 17 0.00037 31.7 4.2 32 140-171 2-37 (209)
203 cd02962 TMX2 TMX2 family; comp 55.3 15 0.00032 31.3 3.5 59 141-204 51-122 (152)
204 cd03006 PDI_a_EFP1_N PDIa fami 55.1 13 0.00028 29.9 3.0 53 138-195 30-89 (113)
205 PLN02309 5'-adenylylsulfate re 54.5 73 0.0016 32.1 8.8 75 139-215 367-455 (457)
206 cd02995 PDI_a_PDI_a'_C PDIa fa 54.4 12 0.00027 27.9 2.6 22 140-161 21-42 (104)
207 PF08534 Redoxin: Redoxin; In 54.1 30 0.00065 27.8 5.1 50 144-196 35-92 (146)
208 PHA03075 glutaredoxin-like pro 53.4 17 0.00036 30.2 3.4 33 139-171 3-35 (123)
209 PF13462 Thioredoxin_4: Thiore 53.1 13 0.00028 30.2 2.8 36 138-173 13-56 (162)
210 KOG0190 Protein disulfide isom 52.9 46 0.001 33.9 7.1 77 141-220 46-135 (493)
211 cd03024 DsbA_FrnE DsbA family, 52.0 18 0.00039 30.8 3.6 31 141-171 1-39 (201)
212 TIGR02738 TrbB type-F conjugat 51.8 83 0.0018 26.7 7.6 31 141-171 54-88 (153)
213 cd02964 TryX_like_family Trypa 51.7 49 0.0011 26.4 6.0 20 141-160 21-40 (132)
214 cd03025 DsbA_FrnE_like DsbA fa 49.9 26 0.00057 29.4 4.3 32 140-171 2-39 (193)
215 PF06110 DUF953: Eukaryotic pr 48.0 65 0.0014 26.5 6.1 63 147-209 36-108 (119)
216 COG5494 Predicted thioredoxin/ 47.9 38 0.00083 31.1 5.1 74 137-216 9-87 (265)
217 COG3118 Thioredoxin domain-con 47.4 32 0.0007 32.8 4.7 78 139-219 45-132 (304)
218 KOG0910 Thioredoxin-like prote 46.7 25 0.00054 30.3 3.6 66 135-203 59-128 (150)
219 PRK13703 conjugal pilus assemb 46.2 1E+02 0.0022 28.5 7.7 111 91-201 88-219 (248)
220 PTZ00056 glutathione peroxidas 46.1 49 0.0011 29.0 5.5 74 141-217 43-129 (199)
221 TIGR02739 TraF type-F conjugat 45.4 53 0.0011 30.5 5.8 111 90-200 94-225 (256)
222 cd02958 UAS UAS family; UAS is 45.1 1.1E+02 0.0025 23.7 7.0 63 140-203 19-91 (114)
223 cd03065 PDI_b_Calsequestrin_N 44.9 1.1E+02 0.0024 24.9 7.0 71 141-216 31-118 (120)
224 COG2761 FrnE Predicted dithiol 44.7 32 0.00069 31.5 4.1 29 138-166 5-37 (225)
225 cd03008 TryX_like_RdCVF Trypar 44.1 93 0.002 26.3 6.7 20 142-161 30-49 (146)
226 COG5515 Uncharacterized conser 43.2 17 0.00037 26.9 1.7 23 139-161 1-27 (70)
227 TIGR00424 APS_reduc 5'-adenyly 43.2 1E+02 0.0022 31.1 7.8 53 140-195 374-433 (463)
228 cd02966 TlpA_like_family TlpA- 42.2 76 0.0016 23.1 5.3 22 140-161 22-43 (116)
229 PTZ00102 disulphide isomerase; 40.4 40 0.00087 32.7 4.4 74 140-218 378-466 (477)
230 cd02992 PDI_a_QSOX PDIa family 40.3 69 0.0015 25.2 5.1 54 140-196 22-84 (114)
231 cd02986 DLP Dim1 family, Dim1- 40.1 44 0.00095 27.4 3.9 50 141-195 18-73 (114)
232 KOG3425 Uncharacterized conser 39.6 84 0.0018 26.3 5.5 70 147-216 43-122 (128)
233 KOG0907 Thioredoxin [Posttrans 38.1 32 0.0007 27.5 2.8 54 144-202 28-86 (106)
234 PF00578 AhpC-TSA: AhpC/TSA fa 36.9 52 0.0011 25.2 3.8 50 147-197 36-90 (124)
235 cd03007 PDI_a_ERp29_N PDIa fam 36.1 1.8E+02 0.004 23.6 7.0 79 138-216 19-115 (116)
236 PRK15412 thiol:disulfide inter 35.8 72 0.0016 27.3 4.8 54 141-196 72-129 (185)
237 cd03018 PRX_AhpE_like Peroxire 35.7 69 0.0015 25.6 4.5 50 146-196 38-92 (149)
238 cd02971 PRX_family Peroxiredox 35.6 55 0.0012 25.8 3.8 56 140-197 24-88 (140)
239 cd03017 PRX_BCP Peroxiredoxin 32.5 55 0.0012 25.8 3.4 54 141-197 26-88 (140)
240 TIGR01626 ytfJ_HI0045 conserve 31.0 2.1E+02 0.0045 25.2 7.0 47 116-166 38-91 (184)
241 cd02982 PDI_b'_family Protein 30.5 58 0.0013 24.3 3.1 54 140-196 15-74 (103)
242 smart00594 UAS UAS domain. 30.4 2.8E+02 0.006 22.0 7.5 56 141-200 31-98 (122)
243 cd03012 TlpA_like_DipZ_like Tl 30.0 75 0.0016 25.0 3.7 55 141-196 27-92 (126)
244 cd05295 MDH_like Malate dehydr 29.9 98 0.0021 31.2 5.2 74 147-220 2-88 (452)
245 cd02988 Phd_like_VIAF Phosduci 29.4 42 0.00091 29.5 2.3 55 141-203 106-165 (192)
246 PF06953 ArsD: Arsenical resis 28.9 1.2E+02 0.0027 25.0 4.9 63 138-202 1-82 (123)
247 cd00340 GSH_Peroxidase Glutath 28.6 88 0.0019 25.6 4.1 20 141-161 26-45 (152)
248 PF13899 Thioredoxin_7: Thiore 27.3 48 0.001 24.3 2.0 19 141-159 21-39 (82)
249 PRK09437 bcp thioredoxin-depen 26.7 1.6E+02 0.0035 23.9 5.3 54 140-196 32-94 (154)
250 PTZ00062 glutaredoxin; Provisi 26.5 2.8E+02 0.0061 24.7 7.1 68 141-219 21-96 (204)
251 KOG0541 Alkyl hydroperoxide re 26.5 24 0.00053 30.8 0.3 36 91-135 108-143 (171)
252 PF06053 DUF929: Domain of unk 26.4 49 0.0011 30.7 2.3 21 141-161 62-82 (249)
253 PLN02399 phospholipid hydroper 26.1 1.8E+02 0.0039 26.6 5.9 16 141-156 103-118 (236)
254 PTZ00256 glutathione peroxidas 26.0 1.7E+02 0.0037 24.9 5.5 18 142-159 46-63 (183)
255 COG0526 TrxA Thiol-disulfide i 25.6 58 0.0013 23.1 2.2 18 145-162 40-57 (127)
256 TIGR01764 excise DNA binding d 24.0 1.2E+02 0.0026 19.2 3.3 32 182-215 18-49 (49)
257 PLN02412 probable glutathione 23.9 1.8E+02 0.0039 24.5 5.2 16 141-156 33-48 (167)
258 PRK09266 hypothetical protein; 23.8 94 0.002 28.2 3.7 63 154-218 196-259 (266)
259 cd02960 AGR Anterior Gradient 23.3 73 0.0016 26.6 2.6 18 141-158 27-44 (130)
260 PF11823 DUF3343: Protein of u 23.2 1.4E+02 0.003 21.8 3.8 33 141-173 3-35 (73)
261 cd02968 SCO SCO (an acronym fo 23.2 1.6E+02 0.0035 23.1 4.6 20 140-159 25-45 (142)
262 TIGR03759 conj_TIGR03759 integ 22.9 2E+02 0.0043 26.0 5.4 36 137-172 108-143 (200)
263 cd04911 ACT_AKiii-YclM-BS_1 AC 22.1 88 0.0019 23.8 2.6 23 149-171 15-37 (76)
264 cd03014 PRX_Atyp2cys Peroxired 20.9 2.1E+02 0.0044 22.8 4.8 57 140-196 28-89 (143)
265 TIGR02540 gpx7 putative glutat 20.2 1.8E+02 0.0039 23.8 4.4 18 141-158 26-43 (153)
No 1
>cd03041 GST_N_2GST_N GST_N family, 2 repeats of the N-terminal domain of soluble GSTs (2 GST_N) subfamily; composed of uncharacterized proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=99.79 E-value=4.1e-19 Score=133.35 Aligned_cols=76 Identities=58% Similarity=1.143 Sum_probs=68.5
Q ss_pred eEEEEcCCCccHHHHHHHHHHcCCCeEEEEcCCCCCCChhHHHhhCCCCceeEEEEcCCCceeeCHHHHHHHHhhhc
Q 024010 141 IEIYEYESCPFCRKVREIVAVLDLDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMVDPNTGVSMYESDNIIKYLVGKY 217 (274)
Q Consensus 141 l~LY~~~~cP~CrkVr~~L~e~gI~ye~~~v~~~~~~~~~e~~~inp~gkVPvLvd~n~G~~I~ES~aIi~YL~~~y 217 (274)
++||+++.||||+||+++|+++||+|+.+++.. +++..++++++||.++||+|++.++|.+|+||.+|++||+++|
T Consensus 2 ~~Ly~~~~sp~~~kv~~~L~~~gi~y~~~~v~~-~~~~~~~~~~~~p~~~vP~l~~~~~~~~l~es~~I~~yL~~~~ 77 (77)
T cd03041 2 LELYEFEGSPFCRLVREVLTELELDVILYPCPK-GSPKRDKFLEKGGKVQVPYLVDPNTGVQMFESADIVKYLFKTY 77 (77)
T ss_pred ceEecCCCCchHHHHHHHHHHcCCcEEEEECCC-ChHHHHHHHHhCCCCcccEEEeCCCCeEEEcHHHHHHHHHHhC
Confidence 799999999999999999999999999999854 3445788999999999999998546789999999999999986
No 2
>cd03045 GST_N_Delta_Epsilon GST_N family, Class Delta and Epsilon subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Delta and Epsilon subfamily is made up primarily of insect GSTs, which play major roles in insecticide resistance by facilitating reductive dehydrochlorination of insecticides or conjugating them with GSH to produce water-soluble metabolites that are easily excreted. They are also implicated in protection against cellular damage by oxidative stress.
Probab=99.73 E-value=1.5e-17 Score=122.30 Aligned_cols=73 Identities=29% Similarity=0.557 Sum_probs=66.6
Q ss_pred eEEEEcCCCccHHHHHHHHHHcCCCeEEEEcC-CCCCCChhHHHhhCCCCceeEEEEcCCCceeeCHHHHHHHHhh
Q 024010 141 IEIYEYESCPFCRKVREIVAVLDLDVLYYPCP-RNGPNFRPKVLQMGGKKQFPYMVDPNTGVSMYESDNIIKYLVG 215 (274)
Q Consensus 141 l~LY~~~~cP~CrkVr~~L~e~gI~ye~~~v~-~~~~~~~~e~~~inp~gkVPvLvd~n~G~~I~ES~aIi~YL~~ 215 (274)
++||+++.||+|++++++|+++|++|+.+.+. .++++..++|.++||.++||+|++ +|.+|+||.||++||++
T Consensus 1 ~~Ly~~~~~~~~~~v~~~l~~~gi~~e~~~i~~~~~~~~~~~~~~~~p~~~vP~l~~--~~~~l~es~aI~~yL~~ 74 (74)
T cd03045 1 IDLYYLPGSPPCRAVLLTAKALGLELNLKEVNLMKGEHLKPEFLKLNPQHTVPTLVD--NGFVLWESHAILIYLVE 74 (74)
T ss_pred CEEEeCCCCCcHHHHHHHHHHcCCCCEEEEecCccCCcCCHHHHhhCcCCCCCEEEE--CCEEEEcHHHHHHHHhC
Confidence 58999999999999999999999999999884 345566799999999999999998 78999999999999974
No 3
>PF13417 GST_N_3: Glutathione S-transferase, N-terminal domain; PDB: 3ERG_B 3IBH_A 3ERF_A 3UBL_A 3UBK_A 3IR4_A 3M8N_B 2R4V_A 2PER_A 2R5G_A ....
Probab=99.72 E-value=1.8e-17 Score=123.60 Aligned_cols=73 Identities=27% Similarity=0.523 Sum_probs=67.3
Q ss_pred EEEcCCCccHHHHHHHHHHcCCCeEEEEcCCCCCCChhHHHhhCCCCceeEEEEcCCCceeeCHHHHHHHHhhhcCC
Q 024010 143 IYEYESCPFCRKVREIVAVLDLDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMVDPNTGVSMYESDNIIKYLVGKYGD 219 (274)
Q Consensus 143 LY~~~~cP~CrkVr~~L~e~gI~ye~~~v~~~~~~~~~e~~~inp~gkVPvLvd~n~G~~I~ES~aIi~YL~~~y~~ 219 (274)
||++.+||||+|||++|+++||+|+.+.+... ..+++|.++||.++||+|++ +|.+|+||.+|++||+++|++
T Consensus 1 Ly~~~~Sp~~~kv~~~l~~~~i~~~~~~v~~~--~~~~~~~~~~p~~~vPvL~~--~g~~l~dS~~I~~yL~~~~~~ 73 (75)
T PF13417_consen 1 LYGFPGSPYSQKVRLALEEKGIPYELVPVDPE--EKRPEFLKLNPKGKVPVLVD--DGEVLTDSAAIIEYLEERYPG 73 (75)
T ss_dssp EEEETTSHHHHHHHHHHHHHTEEEEEEEEBTT--STSHHHHHHSTTSBSSEEEE--TTEEEESHHHHHHHHHHHSTS
T ss_pred CCCcCCChHHHHHHHHHHHcCCeEEEeccCcc--cchhHHHhhcccccceEEEE--CCEEEeCHHHHHHHHHHHcCC
Confidence 89999999999999999999999999998532 23789999999999999997 799999999999999999985
No 4
>cd03052 GST_N_GDAP1 GST_N family, Ganglioside-induced differentiation-associated protein 1 (GDAP1) subfamily; GDAP1 was originally identified as a highly expressed gene at the differentiated stage of GD3 synthase-transfected cells. More recently, mutations in GDAP1 have been reported to cause both axonal and demyelinating autosomal-recessive Charcot-Marie-Tooth (CMT) type 4A neuropathy. CMT is characterized by slow and progressive weakness and atrophy of muscles. Sequence analysis of GDAP1 shows similarities and differences with GSTs; it appears to contain both N-terminal TRX-fold and C-terminal alpha helical domains of GSTs, however, it also contains additional C-terminal transmembrane domains unlike GSTs. GDAP1 is mainly expressed in neuronal cells and is localized in the mitochondria through its transmembrane domains. It does not exhibit GST activity using standard substrates.
Probab=99.72 E-value=2.4e-17 Score=123.20 Aligned_cols=72 Identities=18% Similarity=0.314 Sum_probs=65.6
Q ss_pred eEEEEcCCCccHHHHHHHHHHcCCCeEEEEcC-CCCCCChhHHHhhCCCCceeEEEEcCCCceeeCHHHHHHHHh
Q 024010 141 IEIYEYESCPFCRKVREIVAVLDLDVLYYPCP-RNGPNFRPKVLQMGGKKQFPYMVDPNTGVSMYESDNIIKYLV 214 (274)
Q Consensus 141 l~LY~~~~cP~CrkVr~~L~e~gI~ye~~~v~-~~~~~~~~e~~~inp~gkVPvLvd~n~G~~I~ES~aIi~YL~ 214 (274)
++||+++.|++|+||+++|+++|++|+.+.+. ..++++.++|.++||.++||+|++ +|.+|+||.+|++||+
T Consensus 1 ~~ly~~~~s~~s~rv~~~L~e~gl~~e~~~v~~~~~~~~~~~~~~inP~g~vP~L~~--~g~~l~Es~aI~~yLe 73 (73)
T cd03052 1 LVLYHWTQSFSSQKVRLVIAEKGLRCEEYDVSLPLSEHNEPWFMRLNPTGEVPVLIH--GDNIICDPTQIIDYLE 73 (73)
T ss_pred CEEecCCCCccHHHHHHHHHHcCCCCEEEEecCCcCccCCHHHHHhCcCCCCCEEEE--CCEEEEcHHHHHHHhC
Confidence 48999999999999999999999999999884 344566789999999999999998 8999999999999995
No 5
>cd03059 GST_N_SspA GST_N family, Stringent starvation protein A (SspA) subfamily; SspA is a RNA polymerase (RNAP)-associated protein required for the lytic development of phage P1 and for stationary phase-induced acid tolerance of E. coli. It is implicated in survival during nutrient starvation. SspA adopts the GST fold with an N-terminal TRX-fold domain and a C-terminal alpha helical domain, but it does not bind glutathione (GSH) and lacks GST activity. SspA is highly conserved among gram-negative bacteria. Related proteins found in Neisseria (called RegF), Francisella and Vibrio regulate the expression of virulence factors necessary for pathogenesis.
Probab=99.72 E-value=3.6e-17 Score=119.86 Aligned_cols=73 Identities=21% Similarity=0.340 Sum_probs=66.6
Q ss_pred eEEEEcCCCccHHHHHHHHHHcCCCeEEEEcCCCCCCChhHHHhhCCCCceeEEEEcCCCceeeCHHHHHHHHhhhc
Q 024010 141 IEIYEYESCPFCRKVREIVAVLDLDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMVDPNTGVSMYESDNIIKYLVGKY 217 (274)
Q Consensus 141 l~LY~~~~cP~CrkVr~~L~e~gI~ye~~~v~~~~~~~~~e~~~inp~gkVPvLvd~n~G~~I~ES~aIi~YL~~~y 217 (274)
|+||+.+.||+|+|++++|+++|++|+++.+.. .++.++|+++||.++||+|++ +|..|+||.+|++||+++|
T Consensus 1 ~~ly~~~~~~~~~~v~~~l~~~gi~~~~~~v~~--~~~~~~~~~~~p~~~vP~l~~--~~~~l~es~aI~~yL~~~~ 73 (73)
T cd03059 1 MTLYSGPDDVYSHRVRIVLAEKGVSVEIIDVDP--DNPPEDLAELNPYGTVPTLVD--RDLVLYESRIIMEYLDERF 73 (73)
T ss_pred CEEEECCCChhHHHHHHHHHHcCCccEEEEcCC--CCCCHHHHhhCCCCCCCEEEE--CCEEEEcHHHHHHHHHhhC
Confidence 589999999999999999999999999998853 245689999999999999998 7899999999999999876
No 6
>cd03051 GST_N_GTT2_like GST_N family, Saccharomyces cerevisiae GTT2-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT2. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT2, a homodimer, exhibits GST activity with standard substrates. Strains with deleted GTT2 genes are viable but exhibit increased sensitivity to heat shock.
Probab=99.69 E-value=1.1e-16 Score=116.82 Aligned_cols=73 Identities=25% Similarity=0.354 Sum_probs=64.7
Q ss_pred eEEEEcCCCccHHHHHHHHHHcCCCeEEEEcC-CCCCCChhHHHhhCCCCceeEEEEcCCCceeeCHHHHHHHHh
Q 024010 141 IEIYEYESCPFCRKVREIVAVLDLDVLYYPCP-RNGPNFRPKVLQMGGKKQFPYMVDPNTGVSMYESDNIIKYLV 214 (274)
Q Consensus 141 l~LY~~~~cP~CrkVr~~L~e~gI~ye~~~v~-~~~~~~~~e~~~inp~gkVPvLvd~n~G~~I~ES~aIi~YL~ 214 (274)
++||+++.||+|+|++++|+++|++|+.+.+. ..+++..++|.++||.++||+|+++ +|..|+||.+|++||+
T Consensus 1 ~~Ly~~~~s~~~~~~~~~L~~~~l~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~l~~~-~~~~l~es~aI~~yLe 74 (74)
T cd03051 1 MKLYDSPTAPNPRRVRIFLAEKGIDVPLVTVDLAAGEQRSPEFLAKNPAGTVPVLELD-DGTVITESVAICRYLE 74 (74)
T ss_pred CEEEeCCCCcchHHHHHHHHHcCCCceEEEeecccCccCCHHHHhhCCCCCCCEEEeC-CCCEEecHHHHHHHhC
Confidence 58999999999999999999999999999884 3344557889999999999999853 6789999999999985
No 7
>PRK15113 glutathione S-transferase; Provisional
Probab=99.69 E-value=2e-16 Score=139.19 Aligned_cols=98 Identities=14% Similarity=0.197 Sum_probs=81.6
Q ss_pred CeEEEEcC--CCccHHHHHHHHHHcCCCeEEEEcC-CCCCCChhHHHhhCCCCceeEEEEcCCCceeeCHHHHHHHHhhh
Q 024010 140 PIEIYEYE--SCPFCRKVREIVAVLDLDVLYYPCP-RNGPNFRPKVLQMGGKKQFPYMVDPNTGVSMYESDNIIKYLVGK 216 (274)
Q Consensus 140 ~l~LY~~~--~cP~CrkVr~~L~e~gI~ye~~~v~-~~~~~~~~e~~~inp~gkVPvLvd~n~G~~I~ES~aIi~YL~~~ 216 (274)
.++||+.+ .||+|+||+++|+++||+|+.+.+. .++++..++|+++||.|+||+|++ +|.+|+||.+|++||+++
T Consensus 5 ~~~Ly~~~~~~s~~~~rv~~~l~e~gi~~e~~~v~~~~~~~~~~~~~~~nP~g~VP~L~~--~~~~l~ES~aI~~YL~~~ 82 (214)
T PRK15113 5 AITLYSDAHFFSPYVMSAFVALQEKGLPFELKTVDLDAGEHLQPTYQGYSLTRRVPTLQH--DDFELSESSAIAEYLEER 82 (214)
T ss_pred eEEEEeCCCCCCchHHHHHHHHHHcCCCCeEEEeCCCCccccCHHHHhcCCCCCCCEEEE--CCEEEecHHHHHHHHHHH
Confidence 47999976 6999999999999999999999884 345667799999999999999999 889999999999999999
Q ss_pred cCCC----CCCcchh-hhhhhhHHhhHH
Q 024010 217 YGDG----SVPFMLS-LGLLTTLTEGFA 239 (274)
Q Consensus 217 y~~~----~~P~~~~-~~~~~~l~~~~~ 239 (274)
|+.. .+|.+.. ++.+..+..|..
T Consensus 83 ~~~~~~~~l~p~~~~~ra~~~~~~~~~~ 110 (214)
T PRK15113 83 FAPPAWERIYPADLQARARARQIQAWLR 110 (214)
T ss_pred cCCCCccccCCCCHHHHHHHHHHHHHHH
Confidence 9753 6776543 355555555553
No 8
>cd03056 GST_N_4 GST_N family, unknown subfamily 4; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=99.68 E-value=1.6e-16 Score=116.00 Aligned_cols=72 Identities=24% Similarity=0.429 Sum_probs=65.7
Q ss_pred eEEEEcCCCccHHHHHHHHHHcCCCeEEEEcC-CCCCCChhHHHhhCCCCceeEEEEcCCCceeeCHHHHHHHHh
Q 024010 141 IEIYEYESCPFCRKVREIVAVLDLDVLYYPCP-RNGPNFRPKVLQMGGKKQFPYMVDPNTGVSMYESDNIIKYLV 214 (274)
Q Consensus 141 l~LY~~~~cP~CrkVr~~L~e~gI~ye~~~v~-~~~~~~~~e~~~inp~gkVPvLvd~n~G~~I~ES~aIi~YL~ 214 (274)
++||+++.||+|++++++|+++|++|+.+.+. ..+++..++|.++||.++||+|++ +|.+|+||.+|++||+
T Consensus 1 ~~Ly~~~~~~~~~~v~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~p~~~vP~l~~--~~~~i~es~aI~~yl~ 73 (73)
T cd03056 1 MKLYGFPLSGNCYKVRLLLALLGIPYEWVEVDILKGETRTPEFLALNPNGEVPVLEL--DGRVLAESNAILVYLA 73 (73)
T ss_pred CEEEeCCCCccHHHHHHHHHHcCCCcEEEEecCCCcccCCHHHHHhCCCCCCCEEEE--CCEEEEcHHHHHHHhC
Confidence 58999999999999999999999999999884 345567789999999999999999 7899999999999984
No 9
>cd03053 GST_N_Phi GST_N family, Class Phi subfamily; composed of plant-specific class Phi GSTs and related fungal and bacterial proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Phi GST subfamily has experience extensive gene duplication. The Arabidopsis and Oryza genomes contain 13 and 16 Phi GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Tau GSTs, showing class specificity in substrate preference. Phi enzymes are highly reactive toward chloroacetanilide and thiocarbamate herbicides. Some Phi GSTs have other functions including t
Probab=99.68 E-value=1.9e-16 Score=117.23 Aligned_cols=74 Identities=23% Similarity=0.341 Sum_probs=66.7
Q ss_pred eEEEEcCCCccHHHHHHHHHHcCCCeEEEEcCC-CCCCChhHHHhhCCCCceeEEEEcCCCceeeCHHHHHHHHhhh
Q 024010 141 IEIYEYESCPFCRKVREIVAVLDLDVLYYPCPR-NGPNFRPKVLQMGGKKQFPYMVDPNTGVSMYESDNIIKYLVGK 216 (274)
Q Consensus 141 l~LY~~~~cP~CrkVr~~L~e~gI~ye~~~v~~-~~~~~~~e~~~inp~gkVPvLvd~n~G~~I~ES~aIi~YL~~~ 216 (274)
++||+++.||+|++++++|+++|++|+.+.+.. .+++..++|.++||.++||+|++ +|..|+||.+|++||+++
T Consensus 2 ~~Ly~~~~s~~s~~v~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~P~~~vP~l~~--~g~~l~es~aI~~yL~~~ 76 (76)
T cd03053 2 LKLYGAAMSTCVRRVLLCLEEKGVDYELVPVDLTKGEHKSPEHLARNPFGQIPALED--GDLKLFESRAITRYLAEK 76 (76)
T ss_pred eEEEeCCCChhHHHHHHHHHHcCCCcEEEEeCccccccCCHHHHhhCCCCCCCEEEE--CCEEEEcHHHHHHHHhhC
Confidence 799999999999999999999999999998843 34456788999999999999998 789999999999999864
No 10
>cd03048 GST_N_Ure2p_like GST_N family, Ure2p-like subfamily; composed of the Saccharomyces cerevisiae Ure2p and related GSTs. Ure2p is a regulator for nitrogen catabolism in yeast. It represses the expression of several gene products involved in the use of poor nitrogen sources when rich sources are available. A transmissible conformational change of Ure2p results in a prion called [Ure3], an inactive, self-propagating and infectious amyloid. Ure2p displays a GST fold containing an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The N-terminal TRX-fold domain is sufficient to induce the [Ure3] phenotype and is also called the prion domain of Ure2p. In addition to its role in nitrogen regulation, Ure2p confers protection to cells against heavy metal ion and oxidant toxicity, and shows glutathione (GSH) peroxidase activity. Characterized GSTs in this subfamily include Aspergillus fumigatus GSTs 1 and 2, and
Probab=99.68 E-value=2.8e-16 Score=118.21 Aligned_cols=78 Identities=29% Similarity=0.475 Sum_probs=68.3
Q ss_pred eEEEEcCCCccHHHHHHHHHHcCCCeEEEEcCC-CCCCChhHHHhhCCCCceeEEEEcC-CCceeeCHHHHHHHHhhhcC
Q 024010 141 IEIYEYESCPFCRKVREIVAVLDLDVLYYPCPR-NGPNFRPKVLQMGGKKQFPYMVDPN-TGVSMYESDNIIKYLVGKYG 218 (274)
Q Consensus 141 l~LY~~~~cP~CrkVr~~L~e~gI~ye~~~v~~-~~~~~~~e~~~inp~gkVPvLvd~n-~G~~I~ES~aIi~YL~~~y~ 218 (274)
++||+++. |+|+|++++|+++|++|+.+.+.. .+.+..++|.++||.++||+|++++ +|..|+||.+|++||+++|+
T Consensus 2 ~~Ly~~~~-~~~~~v~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~l~~~~~~g~~l~eS~aI~~yL~~~~~ 80 (81)
T cd03048 2 ITLYTHGT-PNGFKVSIMLEELGLPYEIHPVDISKGEQKKPEFLKINPNGRIPAIVDHNGTPLTVFESGAILLYLAEKYD 80 (81)
T ss_pred eEEEeCCC-CChHHHHHHHHHcCCCcEEEEecCcCCcccCHHHHHhCcCCCCCEEEeCCCCceEEEcHHHHHHHHHHHhC
Confidence 79999986 999999999999999999998853 3456678999999999999999831 18899999999999999987
Q ss_pred C
Q 024010 219 D 219 (274)
Q Consensus 219 ~ 219 (274)
.
T Consensus 81 ~ 81 (81)
T cd03048 81 K 81 (81)
T ss_pred C
Confidence 3
No 11
>cd03050 GST_N_Theta GST_N family, Class Theta subfamily; composed of eukaryotic class Theta GSTs and bacterial dichloromethane (DCM) dehalogenase. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Mammalian class Theta GSTs show poor GSH conjugating activity towards the standard substrates, CDNB and ethacrynic acid, differentiating them from other mammalian GSTs. GSTT1-1 shows similar cataytic activity as bacterial DCM dehalogenase, catalyzing the GSH-dependent hydrolytic dehalogenation of dihalomethanes. This is an essential process in methylotrophic bacteria to enable them to use chloromethane and DC
Probab=99.68 E-value=2.4e-16 Score=117.22 Aligned_cols=75 Identities=21% Similarity=0.345 Sum_probs=67.7
Q ss_pred eEEEEcCCCccHHHHHHHHHHcCCCeEEEEcC-CCCCCChhHHHhhCCCCceeEEEEcCCCceeeCHHHHHHHHhhhc
Q 024010 141 IEIYEYESCPFCRKVREIVAVLDLDVLYYPCP-RNGPNFRPKVLQMGGKKQFPYMVDPNTGVSMYESDNIIKYLVGKY 217 (274)
Q Consensus 141 l~LY~~~~cP~CrkVr~~L~e~gI~ye~~~v~-~~~~~~~~e~~~inp~gkVPvLvd~n~G~~I~ES~aIi~YL~~~y 217 (274)
++||+++.|++|++++++|+++|++|+.+.+. .++++..++|.++||.++||+|++ +|.+|+||.+|++||+++|
T Consensus 1 ~~ly~~~~s~~~~~v~~~l~~~g~~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~~--~~~~l~eS~aI~~Yl~~~~ 76 (76)
T cd03050 1 LKLYYDLMSQPSRAVYIFLKLNKIPFEECPIDLRKGEQLTPEFKKINPFGKVPAIVD--GDFTLAESVAILRYLARKF 76 (76)
T ss_pred CEEeeCCCChhHHHHHHHHHHcCCCcEEEEecCCCCCcCCHHHHHhCcCCCCCEEEE--CCEEEEcHHHHHHHHHhhC
Confidence 57999999999999999999999999999884 334555678999999999999998 7899999999999999876
No 12
>cd03058 GST_N_Tau GST_N family, Class Tau subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The plant-specific class Tau GST subfamily has undergone extensive gene duplication. The Arabidopsis and Oryza genomes contain 28 and 40 Tau GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Phi GSTs, showing class specificity in substrate preference. Tau enzymes are highly efficient in detoxifying diphenylether and aryloxyphenoxypropionate herbicides. In addition, Tau GSTs play important roles in intracellular signalling, biosynthesis of anthocyanin,
Probab=99.68 E-value=2.3e-16 Score=116.72 Aligned_cols=73 Identities=21% Similarity=0.287 Sum_probs=65.6
Q ss_pred eEEEEcCCCccHHHHHHHHHHcCCCeEEEEcCCCCCCChhHHHhhCCC-CceeEEEEcCCCceeeCHHHHHHHHhhhc
Q 024010 141 IEIYEYESCPFCRKVREIVAVLDLDVLYYPCPRNGPNFRPKVLQMGGK-KQFPYMVDPNTGVSMYESDNIIKYLVGKY 217 (274)
Q Consensus 141 l~LY~~~~cP~CrkVr~~L~e~gI~ye~~~v~~~~~~~~~e~~~inp~-gkVPvLvd~n~G~~I~ES~aIi~YL~~~y 217 (274)
|+||+++.||+|+|++++|+++|++|+.+.+.. .++.++|+++||. ++||+|++ +|.+++||.+|++||+++|
T Consensus 1 ~~Ly~~~~sp~~~~v~~~l~~~gl~~~~~~~~~--~~~~~~~~~~~p~~~~vP~l~~--~~~~l~eS~aI~~yL~~~~ 74 (74)
T cd03058 1 VKLLGAWASPFVLRVRIALALKGVPYEYVEEDL--GNKSELLLASNPVHKKIPVLLH--NGKPICESLIIVEYIDEAW 74 (74)
T ss_pred CEEEECCCCchHHHHHHHHHHcCCCCEEEEeCc--ccCCHHHHHhCCCCCCCCEEEE--CCEEeehHHHHHHHHHhhC
Confidence 589999999999999999999999999987743 2456789999995 99999998 7899999999999999875
No 13
>PRK09481 sspA stringent starvation protein A; Provisional
Probab=99.66 E-value=4.6e-16 Score=136.64 Aligned_cols=83 Identities=18% Similarity=0.349 Sum_probs=74.2
Q ss_pred CeEEEEcCCCccHHHHHHHHHHcCCCeEEEEcCCCCCCChhHHHhhCCCCceeEEEEcCCCceeeCHHHHHHHHhhhcCC
Q 024010 140 PIEIYEYESCPFCRKVREIVAVLDLDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMVDPNTGVSMYESDNIIKYLVGKYGD 219 (274)
Q Consensus 140 ~l~LY~~~~cP~CrkVr~~L~e~gI~ye~~~v~~~~~~~~~e~~~inp~gkVPvLvd~n~G~~I~ES~aIi~YL~~~y~~ 219 (274)
.++||+++.||+|++|+++|+++|++|+.+.++. .++.++|+++||.|+||+|++ +|.+|+||.||++||+++|+.
T Consensus 10 ~~~Ly~~~~s~~~~rv~~~L~e~gl~~e~~~v~~--~~~~~~~~~~nP~g~VPvL~~--~g~~l~ES~AIl~YL~~~~~~ 85 (211)
T PRK09481 10 VMTLFSGPTDIYSHQVRIVLAEKGVSVEIEQVEK--DNLPQDLIDLNPYQSVPTLVD--RELTLYESRIIMEYLDERFPH 85 (211)
T ss_pred eeEEeCCCCChhHHHHHHHHHHCCCCCEEEeCCc--ccCCHHHHHhCCCCCCCEEEE--CCEEeeCHHHHHHHHHHhCCC
Confidence 3899999999999999999999999999998864 345789999999999999998 899999999999999999985
Q ss_pred C-CCCcch
Q 024010 220 G-SVPFML 226 (274)
Q Consensus 220 ~-~~P~~~ 226 (274)
. .+|.+.
T Consensus 86 ~~l~p~~~ 93 (211)
T PRK09481 86 PPLMPVYP 93 (211)
T ss_pred CCCCCCCH
Confidence 4 667553
No 14
>cd03040 GST_N_mPGES2 GST_N family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2. Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated, and a C-terminal soluble domain with a GST-like structure.
Probab=99.65 E-value=5.7e-16 Score=115.25 Aligned_cols=75 Identities=25% Similarity=0.449 Sum_probs=63.2
Q ss_pred CeEEEEcCCCccHHHHHHHHHHcCCCeEEEEcCCCCCCChhHHHhhCCCCceeEEEEcC--CCceeeCHHHHHHHHhhhc
Q 024010 140 PIEIYEYESCPFCRKVREIVAVLDLDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMVDPN--TGVSMYESDNIIKYLVGKY 217 (274)
Q Consensus 140 ~l~LY~~~~cP~CrkVr~~L~e~gI~ye~~~v~~~~~~~~~e~~~inp~gkVPvLvd~n--~G~~I~ES~aIi~YL~~~y 217 (274)
+++||+++.||||+|++++|.++||+|+++.+.. ....++ +.+|.++||+|++.+ +|.+|+||.+|++||+++.
T Consensus 1 ~i~Ly~~~~~p~c~kv~~~L~~~gi~y~~~~~~~---~~~~~~-~~~~~~~vP~l~~~~~~~~~~l~eS~~I~~yL~~~~ 76 (77)
T cd03040 1 KITLYQYKTCPFCCKVRAFLDYHGIPYEVVEVNP---VSRKEI-KWSSYKKVPILRVESGGDGQQLVDSSVIISTLKTYL 76 (77)
T ss_pred CEEEEEcCCCHHHHHHHHHHHHCCCceEEEECCc---hhHHHH-HHhCCCccCEEEECCCCCccEEEcHHHHHHHHHHHc
Confidence 4899999999999999999999999999998732 123444 679999999999742 3789999999999999875
Q ss_pred C
Q 024010 218 G 218 (274)
Q Consensus 218 ~ 218 (274)
|
T Consensus 77 ~ 77 (77)
T cd03040 77 G 77 (77)
T ss_pred C
Confidence 4
No 15
>PLN02473 glutathione S-transferase
Probab=99.65 E-value=7.8e-16 Score=134.52 Aligned_cols=95 Identities=16% Similarity=0.179 Sum_probs=79.3
Q ss_pred CCeEEEEcCCCccHHHHHHHHHHcCCCeEEEEcC-CCCCCChhHHHhhCCCCceeEEEEcCCCceeeCHHHHHHHHhhhc
Q 024010 139 KPIEIYEYESCPFCRKVREIVAVLDLDVLYYPCP-RNGPNFRPKVLQMGGKKQFPYMVDPNTGVSMYESDNIIKYLVGKY 217 (274)
Q Consensus 139 ~~l~LY~~~~cP~CrkVr~~L~e~gI~ye~~~v~-~~~~~~~~e~~~inp~gkVPvLvd~n~G~~I~ES~aIi~YL~~~y 217 (274)
|.++||+.+.||+|+||+++|+++||+|+.+.+. .++++..++++++||.++||+|++ +|.+|+||.+|++||+++|
T Consensus 1 ~~~kLy~~~~s~~~~rv~~~L~e~gi~ye~~~v~~~~~~~~~~~~~~~nP~g~vP~L~~--~g~~l~ES~aI~~YL~~~~ 78 (214)
T PLN02473 1 MVVKVYGQIKAANPQRVLLCFLEKGIEFEVIHVDLDKLEQKKPEHLLRQPFGQVPAIED--GDLKLFESRAIARYYATKY 78 (214)
T ss_pred CceEEecCCCCCchHHHHHHHHHcCCCceEEEecCcccccCCHHHHhhCCCCCCCeEEE--CCEEEEehHHHHHHHHHHc
Confidence 3589999999999999999999999999999884 445677899999999999999998 8899999999999999999
Q ss_pred CC---CCCCcchh-hhhhhhHH
Q 024010 218 GD---GSVPFMLS-LGLLTTLT 235 (274)
Q Consensus 218 ~~---~~~P~~~~-~~~~~~l~ 235 (274)
+. ..+|.+.. ++.+....
T Consensus 79 ~~~~~~l~p~~~~~ra~~~~~~ 100 (214)
T PLN02473 79 ADQGTDLLGKTLEHRAIVDQWV 100 (214)
T ss_pred CCcCCCCCCCCHHHHHHHHHHH
Confidence 74 36776533 33444333
No 16
>cd03037 GST_N_GRX2 GST_N family, Glutaredoxin 2 (GRX2) subfamily; composed of bacterial proteins similar to E. coli GRX2, an atypical GRX with a molecular mass of about 24kD, compared with other GRXs which are 9-12kD in size. GRX2 adopts a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. It contains a redox active CXXC motif located in the N-terminal domain but is not able to reduce ribonucleotide reductase like other GRXs. However, it catalyzes GSH-dependent protein disulfide reduction of other substrates efficiently. GRX2 is thought to function primarily in catalyzing the reversible glutathionylation of proteins in cellular redox regulation including stress responses.
Probab=99.65 E-value=3.8e-16 Score=114.67 Aligned_cols=71 Identities=30% Similarity=0.524 Sum_probs=60.9
Q ss_pred eEEEEcCCCccHHHHHHHHHHcCCCeEEEEcCCCCCCChhHHHhhCCCCceeEEEEcCCCceeeCHHHHHHHHhh
Q 024010 141 IEIYEYESCPFCRKVREIVAVLDLDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMVDPNTGVSMYESDNIIKYLVG 215 (274)
Q Consensus 141 l~LY~~~~cP~CrkVr~~L~e~gI~ye~~~v~~~~~~~~~e~~~inp~gkVPvLvd~n~G~~I~ES~aIi~YL~~ 215 (274)
++||++..||||+|||++|.++|++|+.+.+... . .....+.+|.++||+|+++ +|.+|+||.+|++||++
T Consensus 1 ~~Ly~~~~~p~~~rvr~~L~~~gl~~~~~~~~~~-~--~~~~~~~~~~~~vP~L~~~-~~~~l~es~aI~~yL~~ 71 (71)
T cd03037 1 MKLYIYEHCPFCVKARMIAGLKNIPVEQIILQND-D--EATPIRMIGAKQVPILEKD-DGSFMAESLDIVAFIDE 71 (71)
T ss_pred CceEecCCCcHhHHHHHHHHHcCCCeEEEECCCC-c--hHHHHHhcCCCccCEEEeC-CCeEeehHHHHHHHHhC
Confidence 5799999999999999999999999999987532 2 2245678999999999872 48899999999999974
No 17
>COG0625 Gst Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.65 E-value=6.4e-16 Score=135.19 Aligned_cols=85 Identities=24% Similarity=0.358 Sum_probs=75.5
Q ss_pred eEEEEcCCCccHHHHHHHHHHcCCCeEEEEcCCCCCCChhHHHhhCCCCceeEEEEcCCCceeeCHHHHHHHHhhhcCCC
Q 024010 141 IEIYEYESCPFCRKVREIVAVLDLDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMVDPNTGVSMYESDNIIKYLVGKYGDG 220 (274)
Q Consensus 141 l~LY~~~~cP~CrkVr~~L~e~gI~ye~~~v~~~~~~~~~e~~~inp~gkVPvLvd~n~G~~I~ES~aIi~YL~~~y~~~ 220 (274)
++||+.+.||+|+||+++|.++|++|+.+.+....++..++|+++||.++||+|+++ ||.+|+||.+|++||+++|+..
T Consensus 1 ~~L~~~~~sp~~~kv~l~l~e~g~~ye~~~v~~~~~~~~~~~~~~nP~gkVPvL~~~-~~~~l~ES~AI~~YL~~~~~~~ 79 (211)
T COG0625 1 MKLYGSPTSPYSRKVRLALEEKGLPYEIVLVDLDAEQKPPDFLALNPLGKVPALVDD-DGEVLTESGAILEYLAERYPGP 79 (211)
T ss_pred CeeecCCCCcchHHHHHHHHHcCCCceEEEeCcccccCCHHHHhcCCCCCCCEEeeC-CCCeeecHHHHHHHHHhhCCCC
Confidence 589999999999999999999999999999954335678999999999999999984 3349999999999999999987
Q ss_pred -CCCcch
Q 024010 221 -SVPFML 226 (274)
Q Consensus 221 -~~P~~~ 226 (274)
.+|.+.
T Consensus 80 ~l~p~~~ 86 (211)
T COG0625 80 PLLPADP 86 (211)
T ss_pred CcCCCCc
Confidence 888765
No 18
>cd03060 GST_N_Omega_like GST_N family, Omega-like subfamily; composed of uncharacterized proteins with similarity to class Omega GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. Like Omega enzymes, proteins in this subfamily contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a r
Probab=99.64 E-value=8.8e-16 Score=113.05 Aligned_cols=69 Identities=20% Similarity=0.376 Sum_probs=62.1
Q ss_pred EEEEcCCCccHHHHHHHHHHcCCCeEEEEcCCCCCCChhHHHhhCCCCceeEEEEcCCCceeeCHHHHHHHH
Q 024010 142 EIYEYESCPFCRKVREIVAVLDLDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMVDPNTGVSMYESDNIIKYL 213 (274)
Q Consensus 142 ~LY~~~~cP~CrkVr~~L~e~gI~ye~~~v~~~~~~~~~e~~~inp~gkVPvLvd~n~G~~I~ES~aIi~YL 213 (274)
+||++..||||+|++++|+++|++|+.+.+... +..++|+++||.++||+|+++ ||..|+||.+|++|+
T Consensus 2 ~ly~~~~~p~~~rv~~~L~~~gl~~e~~~v~~~--~~~~~~~~~np~~~vP~L~~~-~g~~l~eS~aI~~y~ 70 (71)
T cd03060 2 ILYSFRRCPYAMRARMALLLAGITVELREVELK--NKPAEMLAASPKGTVPVLVLG-NGTVIEESLDIMRWA 70 (71)
T ss_pred EEEecCCCcHHHHHHHHHHHcCCCcEEEEeCCC--CCCHHHHHHCCCCCCCEEEEC-CCcEEecHHHHHHhh
Confidence 799999999999999999999999999988542 235789999999999999983 588999999999997
No 19
>cd03057 GST_N_Beta GST_N family, Class Beta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Unlike mammalian GSTs which detoxify a broad range of compounds, the bacterial class Beta GSTs exhibit limited GSH conjugating activity with a narrow range of substrates. In addition to GSH conjugation, they also bind antibiotics and reduce the antimicrobial activity of beta-lactam drugs. The structure of the Proteus mirabilis enzyme reveals that the cysteine in the active site forms a covalent bond with GSH.
Probab=99.64 E-value=1.3e-15 Score=113.37 Aligned_cols=76 Identities=20% Similarity=0.201 Sum_probs=66.5
Q ss_pred eEEEEcCCCccHHHHHHHHHHcCCCeEEEEcC-CCCCCChhHHHhhCCCCceeEEEEcCCCceeeCHHHHHHHHhhhcC
Q 024010 141 IEIYEYESCPFCRKVREIVAVLDLDVLYYPCP-RNGPNFRPKVLQMGGKKQFPYMVDPNTGVSMYESDNIIKYLVGKYG 218 (274)
Q Consensus 141 l~LY~~~~cP~CrkVr~~L~e~gI~ye~~~v~-~~~~~~~~e~~~inp~gkVPvLvd~n~G~~I~ES~aIi~YL~~~y~ 218 (274)
++||+++.| +|++|+++|+++|++|+.+.+. .++++..++|+++||.++||+|+++ +|..|+||.+|++||+++|+
T Consensus 1 ~~Ly~~~~~-~~~~v~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~np~~~vP~l~~~-~g~~l~eS~aI~~yL~~~~p 77 (77)
T cd03057 1 MKLYYSPGA-CSLAPHIALEELGLPFELVRVDLRTKTQKGADYLAINPKGQVPALVLD-DGEVLTESAAILQYLADLHP 77 (77)
T ss_pred CEEEeCCCC-chHHHHHHHHHcCCCceEEEEecccCccCCHhHHHhCCCCCCCEEEEC-CCcEEEcHHHHHHHHHHhCc
Confidence 589999976 5999999999999999998884 3345667899999999999999982 48999999999999999885
No 20
>cd03044 GST_N_EF1Bgamma GST_N family, Gamma subunit of Elongation Factor 1B (EFB1gamma) subfamily; EF1Bgamma is part of the eukaryotic translation elongation factor-1 (EF1) complex which plays a central role in the elongation cycle during protein biosynthesis. EF1 consists of two functionally distinct units, EF1A and EF1B. EF1A catalyzes the GTP-dependent binding of aminoacyl-tRNA to the ribosomal A site concomitant with the hydrolysis of GTP. The resulting inactive EF1A:GDP complex is recycled to the active GTP form by the guanine-nucleotide exchange factor EF1B, a complex composed of at least two subunits, alpha and gamma. Metazoan EFB1 contain a third subunit, beta. The EF1B gamma subunit contains a GST fold consisting of an N-terminal TRX-fold domain and a C-terminal alpha helical domain. The GST-like domain of EF1Bgamma is believed to mediate the dimerization of the EF1 complex, which in yeast is a dimer of the heterotrimer EF1A:EF1Balpha:EF1Bgamma. In addition to its role in prot
Probab=99.64 E-value=1.1e-15 Score=113.77 Aligned_cols=73 Identities=22% Similarity=0.300 Sum_probs=65.7
Q ss_pred EEEEcCCCccHHHHHHHHHHcCCCeEEEEcCCCCCCChhHHHhhCCCCceeEEEEcCCCceeeCHHHHHHHHhh
Q 024010 142 EIYEYESCPFCRKVREIVAVLDLDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMVDPNTGVSMYESDNIIKYLVG 215 (274)
Q Consensus 142 ~LY~~~~cP~CrkVr~~L~e~gI~ye~~~v~~~~~~~~~e~~~inp~gkVPvLvd~n~G~~I~ES~aIi~YL~~ 215 (274)
+||+++.||+|++++++|+++|++|+.+.+....+++.++|+++||.++||+|+++ +|.+|+||.+|++||++
T Consensus 2 ~Ly~~~~~~~~~~~~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~nP~~~vP~L~~~-~g~~l~es~aI~~yL~~ 74 (75)
T cd03044 2 TLYTYPGNPRSLKILAAAKYNGLDVEIVDFQPGKENKTPEFLKKFPLGKVPAFEGA-DGFCLFESNAIAYYVAN 74 (75)
T ss_pred eEecCCCCccHHHHHHHHHHcCCceEEEecccccccCCHHHHHhCCCCCCCEEEcC-CCCEEeeHHHHHHHHhh
Confidence 79999999999999999999999999998864334667899999999999999973 57899999999999985
No 21
>KOG0868 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.63 E-value=6.6e-16 Score=134.27 Aligned_cols=101 Identities=21% Similarity=0.260 Sum_probs=84.0
Q ss_pred CCCeEEEEcCCCccHHHHHHHHHHcCCCeEEEEcC--CCCCCChhHHHhhCCCCceeEEEEcCCCceeeCHHHHHHHHhh
Q 024010 138 EKPIEIYEYESCPFCRKVREIVAVLDLDVLYYPCP--RNGPNFRPKVLQMGGKKQFPYMVDPNTGVSMYESDNIIKYLVG 215 (274)
Q Consensus 138 ~~~l~LY~~~~cP~CrkVr~~L~e~gI~ye~~~v~--~~~~~~~~e~~~inp~gkVPvLvd~n~G~~I~ES~aIi~YL~~ 215 (274)
+.+.+||.|-.|.+++|||++|..+||+||.++|. +++.....+|+++||+++||.|++ ||.+|.||.||++||++
T Consensus 3 ~~KpiLYSYWrSSCswRVRiALaLK~iDYey~PvnLlk~~~q~~~ef~~iNPm~kVP~L~i--~g~tl~eS~AII~YLeE 80 (217)
T KOG0868|consen 3 AAKPILYSYWRSSCSWRVRIALALKGIDYEYKPVNLLKEEDQSDSEFKEINPMEKVPTLVI--DGLTLTESLAIIEYLEE 80 (217)
T ss_pred cccchhhhhhcccchHHHHHHHHHcCCCcceeehhhhcchhhhhhHHhhcCchhhCCeEEE--CCEEeehHHHHHHHHHh
Confidence 34789999999999999999999999999999993 433455679999999999999999 99999999999999999
Q ss_pred hcCCC-CCCcchhh-hhhhhHHhhHHh
Q 024010 216 KYGDG-SVPFMLSL-GLLTTLTEGFAM 240 (274)
Q Consensus 216 ~y~~~-~~P~~~~~-~~~~~l~~~~~~ 240 (274)
.|+++ +.|+|... +...++..-.+.
T Consensus 81 t~P~ppLLP~d~~KRA~~r~i~~~i~s 107 (217)
T KOG0868|consen 81 TYPDPPLLPKDPHKRAKARAISLLIAS 107 (217)
T ss_pred cCCCCCCCCcCHHHHHHHHHHHHHHHh
Confidence 99875 88988743 444444444333
No 22
>cd03047 GST_N_2 GST_N family, unknown subfamily 2; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The sequence from Burkholderia cepacia was identified as part of a gene cluster involved in the degradation of 2,4,5-trichlorophenoxyacetic acid. Some GSTs (e.g. Class Zeta and Delta) are known to catalyze dechlorination reactions.
Probab=99.62 E-value=1.9e-15 Score=111.64 Aligned_cols=72 Identities=24% Similarity=0.314 Sum_probs=64.8
Q ss_pred eEEEEcCCCccHHHHHHHHHHcCCCeEEEEcC-CCCCCChhHHHhhCCCCceeEEEEcCCCceeeCHHHHHHHHh
Q 024010 141 IEIYEYESCPFCRKVREIVAVLDLDVLYYPCP-RNGPNFRPKVLQMGGKKQFPYMVDPNTGVSMYESDNIIKYLV 214 (274)
Q Consensus 141 l~LY~~~~cP~CrkVr~~L~e~gI~ye~~~v~-~~~~~~~~e~~~inp~gkVPvLvd~n~G~~I~ES~aIi~YL~ 214 (274)
++||+++.||+|++|+++|+++|++|+.+.+. ..+++..++|.++||.++||+|++ +|..|+||.+|++||+
T Consensus 1 ~~l~~~~~s~~~~~v~~~L~~~~l~~~~~~~~~~~~~~~~~~~~~~nP~~~vP~L~~--~~~~l~eS~aI~~YL~ 73 (73)
T cd03047 1 LTIWGRRSSINVQKVLWLLDELGLPYERIDAGGQFGGLDTPEFLAMNPNGRVPVLED--GDFVLWESNAILRYLA 73 (73)
T ss_pred CEEEecCCCcchHHHHHHHHHcCCCCEEEEeccccccccCHHHHhhCCCCCCCEEEE--CCEEEECHHHHHHHhC
Confidence 58999999999999999999999999998874 334456789999999999999999 8899999999999985
No 23
>cd03076 GST_N_Pi GST_N family, Class Pi subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Pi GST is a homodimeric eukaryotic protein. The human GSTP1 is mainly found in erythrocytes, kidney, placenta and fetal liver. It is involved in stress responses and in cellular proliferation pathways as an inhibitor of JNK (c-Jun N-terminal kinase). Following oxidative stress, monomeric GSTP1 dissociates from JNK and dimerizes, losing its ability to bind JNK and causing an increase in JNK activity, thereby promoting apoptosis. GSTP1 is expressed in various tumors and is the predominant GST in a w
Probab=99.61 E-value=1.5e-15 Score=112.82 Aligned_cols=73 Identities=14% Similarity=0.125 Sum_probs=65.3
Q ss_pred CeEEEEcCCCccHHHHHHHHHHcCCCeEEEEcCCCCCCChhHHHhhCCCCceeEEEEcCCCceeeCHHHHHHHHhhh
Q 024010 140 PIEIYEYESCPFCRKVREIVAVLDLDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMVDPNTGVSMYESDNIIKYLVGK 216 (274)
Q Consensus 140 ~l~LY~~~~cP~CrkVr~~L~e~gI~ye~~~v~~~~~~~~~e~~~inp~gkVPvLvd~n~G~~I~ES~aIi~YL~~~ 216 (274)
+++||+++.|++|++++++|+++|++|+.+.+.. +++.++++++||.++||+|++ +|.+|+||.+|++||+++
T Consensus 1 ~~~Ly~~~~~~~~~~v~~~L~~~~i~~e~~~v~~--~~~~~~~~~~~p~~~vP~l~~--~~~~l~es~aI~~yL~~~ 73 (73)
T cd03076 1 PYTLTYFPVRGRAEAIRLLLADQGISWEEERVTY--EEWQESLKPKMLFGQLPCFKD--GDLTLVQSNAILRHLGRK 73 (73)
T ss_pred CcEEEEeCCcchHHHHHHHHHHcCCCCEEEEecH--HHhhhhhhccCCCCCCCEEEE--CCEEEEcHHHHHHHHhcC
Confidence 3799999999999999999999999999998853 234568999999999999999 889999999999999863
No 24
>cd03055 GST_N_Omega GST_N family, Class Omega subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. They contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a redox active residue capable of reducing GSH mixed disulfides in a monothiol mechanism. Polymorphisms of the class Omega
Probab=99.61 E-value=3.7e-15 Score=114.98 Aligned_cols=76 Identities=20% Similarity=0.270 Sum_probs=66.3
Q ss_pred CCCCCeEEEEcCCCccHHHHHHHHHHcCCCeEEEEcCCCCCCChhHHHhhCCCCceeEEEEcCCCceeeCHHHHHHHHh
Q 024010 136 RPEKPIEIYEYESCPFCRKVREIVAVLDLDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMVDPNTGVSMYESDNIIKYLV 214 (274)
Q Consensus 136 ~~~~~l~LY~~~~cP~CrkVr~~L~e~gI~ye~~~v~~~~~~~~~e~~~inp~gkVPvLvd~n~G~~I~ES~aIi~YL~ 214 (274)
...+.++||+++.||+|+||+++|+++|++|+.+.+... +..++|.++||.++||+|+++ +|.+|+||.+|++||+
T Consensus 14 ~~~~~~~Ly~~~~sp~~~kv~~~L~~~gl~~~~~~v~~~--~~~~~~~~~np~~~vPvL~~~-~g~~l~eS~aI~~yLe 89 (89)
T cd03055 14 PVPGIIRLYSMRFCPYAQRARLVLAAKNIPHEVININLK--DKPDWFLEKNPQGKVPALEID-EGKVVYESLIICEYLD 89 (89)
T ss_pred CCCCcEEEEeCCCCchHHHHHHHHHHcCCCCeEEEeCCC--CCcHHHHhhCCCCCcCEEEEC-CCCEEECHHHHHHhhC
Confidence 345679999999999999999999999999999988542 234679999999999999982 4889999999999985
No 25
>cd03042 GST_N_Zeta GST_N family, Class Zeta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Zeta GSTs, also known as maleylacetoacetate (MAA) isomerases, catalyze the isomerization of MAA to fumarylacetoacetate, the penultimate step in tyrosine/phenylalanine catabolism, using GSH as a cofactor. They show little GSH-conjugating activity towards traditional GST substrates but display modest GSH peroxidase activity. They are also implicated in the detoxification of the carcinogen dichloroacetic acid by catalyzing its dechlorination to glyoxylic acid.
Probab=99.61 E-value=2.8e-15 Score=109.59 Aligned_cols=72 Identities=25% Similarity=0.386 Sum_probs=65.3
Q ss_pred eEEEEcCCCccHHHHHHHHHHcCCCeEEEEcC-CCCCCChhHHHhhCCCCceeEEEEcCCCceeeCHHHHHHHHh
Q 024010 141 IEIYEYESCPFCRKVREIVAVLDLDVLYYPCP-RNGPNFRPKVLQMGGKKQFPYMVDPNTGVSMYESDNIIKYLV 214 (274)
Q Consensus 141 l~LY~~~~cP~CrkVr~~L~e~gI~ye~~~v~-~~~~~~~~e~~~inp~gkVPvLvd~n~G~~I~ES~aIi~YL~ 214 (274)
++||++..|++|++++++|+++|++|+.+.+. .++.+..++|.++||.++||+|++ +|..|+||.||++||+
T Consensus 1 ~~L~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~l~~--~~~~l~es~aI~~yL~ 73 (73)
T cd03042 1 MILYSYFRSSASYRVRIALNLKGLDYEYVPVNLLKGEQLSPAYRALNPQGLVPTLVI--DGLVLTQSLAIIEYLD 73 (73)
T ss_pred CEEecCCCCcchHHHHHHHHHcCCCCeEEEecCccCCcCChHHHHhCCCCCCCEEEE--CCEEEEcHHHHHHHhC
Confidence 58999999999999999999999999999884 344556789999999999999999 7899999999999985
No 26
>cd03046 GST_N_GTT1_like GST_N family, Saccharomyces cerevisiae GTT1-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT1, and the Schizosaccharomyces pombe GST-III. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT1, a homodimer, exhibits GST activity with standard substrates and associates with the endoplasmic reticulum. Its expression is induced after diauxic shift and remains high throughout the stationary phase. S. pomb
Probab=99.61 E-value=3.9e-15 Score=109.76 Aligned_cols=75 Identities=27% Similarity=0.382 Sum_probs=66.6
Q ss_pred eEEEEcCCCccHHHHHHHHHHcCCCeEEEEcCC-CCCCChhHHHhhCCCCceeEEEEcCCCceeeCHHHHHHHHhhhcC
Q 024010 141 IEIYEYESCPFCRKVREIVAVLDLDVLYYPCPR-NGPNFRPKVLQMGGKKQFPYMVDPNTGVSMYESDNIIKYLVGKYG 218 (274)
Q Consensus 141 l~LY~~~~cP~CrkVr~~L~e~gI~ye~~~v~~-~~~~~~~e~~~inp~gkVPvLvd~n~G~~I~ES~aIi~YL~~~y~ 218 (274)
++||+++. ++|++|+++|+++|++|+.+.+.. .+.++.++|.++||.++||+|++ +|..|+||.+|++||+++|+
T Consensus 1 ~~l~~~~~-~~~~~v~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~l~~--~g~~l~es~aI~~yL~~~~~ 76 (76)
T cd03046 1 ITLYHLPR-SRSFRILWLLEELGLPYELVLYDRGPGEQAPPEYLAINPLGKVPVLVD--GDLVLTESAAIILYLAEKYG 76 (76)
T ss_pred CEEEeCCC-CChHHHHHHHHHcCCCcEEEEeCCCCCccCCHHHHhcCCCCCCCEEEE--CCEEEEcHHHHHHHHHHhCc
Confidence 57999886 689999999999999999998853 24556789999999999999998 88999999999999999885
No 27
>cd03061 GST_N_CLIC GST_N family, Chloride Intracellular Channel (CLIC) subfamily; composed of CLIC1-5, p64, parchorin and similar proteins. They are auto-inserting, self-assembling intracellular anion channels involved in a wide variety of functions including regulated secretion, cell division and apoptosis. They can exist in both water-soluble and membrane-bound states, and are found in various vesicles and membranes. Biochemical studies of the C. elegans homolog, EXC-4, show that the membrane localization domain is present in the N-terminal part of the protein. The structure of soluble human CLIC1 reveals that it is monomeric and it adopts a fold similar to GSTs, containing an N-terminal domain with a TRX fold and a C-terminal alpha helical domain. Upon oxidation, the N-terminal domain of CLIC1 undergoes a structural change to form a non-covalent dimer stabilized by the formation of an intramolecular disulfide bond between two cysteines that are far apart in the reduced form. The CLI
Probab=99.60 E-value=2.9e-15 Score=117.63 Aligned_cols=71 Identities=13% Similarity=0.256 Sum_probs=63.1
Q ss_pred CCCccHHHHHHHHHHcCCCeEEEEcCCCCCCChhHHHhhCCCCceeEEEEcCCCceeeCHHHHHHHHhhhcCCCC
Q 024010 147 ESCPFCRKVREIVAVLDLDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMVDPNTGVSMYESDNIIKYLVGKYGDGS 221 (274)
Q Consensus 147 ~~cP~CrkVr~~L~e~gI~ye~~~v~~~~~~~~~e~~~inp~gkVPvLvd~n~G~~I~ES~aIi~YL~~~y~~~~ 221 (274)
..||||+|+|++|.++||+|+.+.+... +..++|.++||.++||+|++ +|.+|+||.+|++||+++|..+.
T Consensus 20 g~cpf~~rvrl~L~eKgi~ye~~~vd~~--~~p~~~~~~nP~g~vPvL~~--~~~~i~eS~~I~eYLde~~~~~~ 90 (91)
T cd03061 20 GNCPFCQRLFMVLWLKGVVFNVTTVDMK--RKPEDLKDLAPGTQPPFLLY--NGEVKTDNNKIEEFLEETLCPPK 90 (91)
T ss_pred CCChhHHHHHHHHHHCCCceEEEEeCCC--CCCHHHHHhCCCCCCCEEEE--CCEEecCHHHHHHHHHHHccCCC
Confidence 4699999999999999999999988532 23578999999999999999 89999999999999999997643
No 28
>PF13409 GST_N_2: Glutathione S-transferase, N-terminal domain; PDB: 3C8E_B 3M1G_A 3R3E_A 3O3T_A 1RK4_A 1K0O_B 1K0N_A 3QR6_A 3SWL_A 3TGZ_B ....
Probab=99.59 E-value=2.5e-15 Score=111.15 Aligned_cols=68 Identities=26% Similarity=0.406 Sum_probs=57.8
Q ss_pred CCccHHHHHHHHHHcCCCeEEEEc-C-CCCCCChhHHHhhCCCCceeEEEEcCCCceeeCHHHHHHHHhhh
Q 024010 148 SCPFCRKVREIVAVLDLDVLYYPC-P-RNGPNFRPKVLQMGGKKQFPYMVDPNTGVSMYESDNIIKYLVGK 216 (274)
Q Consensus 148 ~cP~CrkVr~~L~e~gI~ye~~~v-~-~~~~~~~~e~~~inp~gkVPvLvd~n~G~~I~ES~aIi~YL~~~ 216 (274)
.||||+||+++|+++|++|+...+ . .++....++|.++||.++||+|+++ +|.+++||.+|++||+++
T Consensus 1 ~sP~a~Rv~i~l~~~gl~~~~~~v~~~~~~~~~~~~~~~~~p~~~VP~L~~~-~g~vi~eS~~I~~yL~~~ 70 (70)
T PF13409_consen 1 FSPFAHRVRIALEEKGLPYEIKVVPLIPKGEQKPPEFLALNPRGKVPVLVDP-DGTVINESLAILEYLEEQ 70 (70)
T ss_dssp T-HHHHHHHHHHHHHTGTCEEEEEETTTTBCTTCHBHHHHSTT-SSSEEEET-TTEEEESHHHHHHHHHHT
T ss_pred CchHhHHHHHHHHHhCCCCEEEEEeeecCccccChhhhccCcCeEEEEEEEC-CCCEeeCHHHHHHHHhcC
Confidence 499999999999999999999877 2 2344456899999999999999986 788999999999999974
No 29
>cd03049 GST_N_3 GST_N family, unknown subfamily 3; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=99.59 E-value=4.9e-15 Score=109.15 Aligned_cols=71 Identities=23% Similarity=0.277 Sum_probs=63.0
Q ss_pred eEEEEcCCCccHHHHHHHHHH--cCCCeEEEEcCCCCCCChhHHHhhCCCCceeEEEEcCCCceeeCHHHHHHHHh
Q 024010 141 IEIYEYESCPFCRKVREIVAV--LDLDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMVDPNTGVSMYESDNIIKYLV 214 (274)
Q Consensus 141 l~LY~~~~cP~CrkVr~~L~e--~gI~ye~~~v~~~~~~~~~e~~~inp~gkVPvLvd~n~G~~I~ES~aIi~YL~ 214 (274)
++||++..||+|+|+|++|.+ +|++|+.+.+.. .++.++|.++||.++||+|+++ +|..|+||.+|++||+
T Consensus 1 ~~Ly~~~~s~~~~~~~~~l~~~~~~i~~~~~~~~~--~~~~~~~~~~~p~~~vP~l~~~-~g~~l~es~aI~~yLe 73 (73)
T cd03049 1 MKLLYSPTSPYVRKVRVAAHETGLGDDVELVLVNP--WSDDESLLAVNPLGKIPALVLD-DGEALFDSRVICEYLD 73 (73)
T ss_pred CEEecCCCCcHHHHHHHHHHHhCCCCCcEEEEcCc--ccCChHHHHhCCCCCCCEEEEC-CCCEEECHHHHHhhhC
Confidence 589999999999999999999 899999988753 2446789999999999999853 7889999999999985
No 30
>PRK13972 GSH-dependent disulfide bond oxidoreductase; Provisional
Probab=99.59 E-value=9.1e-15 Score=128.41 Aligned_cols=98 Identities=23% Similarity=0.321 Sum_probs=77.3
Q ss_pred eEEEEcCCCccHHHHHHHHHHcCCCeEEEEcC-CCCCCChhHHHhhCCCCceeEEEEc---CCC--ceeeCHHHHHHHHh
Q 024010 141 IEIYEYESCPFCRKVREIVAVLDLDVLYYPCP-RNGPNFRPKVLQMGGKKQFPYMVDP---NTG--VSMYESDNIIKYLV 214 (274)
Q Consensus 141 l~LY~~~~cP~CrkVr~~L~e~gI~ye~~~v~-~~~~~~~~e~~~inp~gkVPvLvd~---n~G--~~I~ES~aIi~YL~ 214 (274)
++||+.+ +++|+||+++|+++||+|+.+.+. .+++++.++|+++||.|+||+|++. ||| .+|+||.||++||+
T Consensus 2 ~~Ly~~~-~~~~~~v~~~L~e~gl~~e~~~v~~~~~~~~~~~~~~iNP~gkVP~L~~~~~~d~g~~~~L~ES~AI~~YL~ 80 (215)
T PRK13972 2 IDLYFAP-TPNGHKITLFLEEAELDYRLIKVDLGKGGQFRPEFLRISPNNKIPAIVDHSPADGGEPLSLFESGAILLYLA 80 (215)
T ss_pred eEEEECC-CCChHHHHHHHHHcCCCcEEEEecCcccccCCHHHHhhCcCCCCCEEEeCCCCCCCCceeEEcHHHHHHHHH
Confidence 7899877 799999999999999999999884 4456678899999999999999973 245 47999999999999
Q ss_pred hhcCCCCCCcch-hhhhhhhHHhhHHh
Q 024010 215 GKYGDGSVPFML-SLGLLTTLTEGFAM 240 (274)
Q Consensus 215 ~~y~~~~~P~~~-~~~~~~~l~~~~~~ 240 (274)
++|+. ..|.+. .++.+.....|...
T Consensus 81 ~~~~~-l~p~~~~~ra~~~~~~~~~~~ 106 (215)
T PRK13972 81 EKTGL-FLSHETRERAATLQWLFWQVG 106 (215)
T ss_pred HhcCC-CCCCCHHHHHHHHHHHHHHhh
Confidence 99963 455443 34454444444433
No 31
>PLN02395 glutathione S-transferase
Probab=99.58 E-value=1.3e-14 Score=126.61 Aligned_cols=95 Identities=16% Similarity=0.250 Sum_probs=77.1
Q ss_pred CCeEEEEcCCCccHHHHHHHHHHcCCCeEEEEcC-CCCCCChhHHHhhCCCCceeEEEEcCCCceeeCHHHHHHHHhhhc
Q 024010 139 KPIEIYEYESCPFCRKVREIVAVLDLDVLYYPCP-RNGPNFRPKVLQMGGKKQFPYMVDPNTGVSMYESDNIIKYLVGKY 217 (274)
Q Consensus 139 ~~l~LY~~~~cP~CrkVr~~L~e~gI~ye~~~v~-~~~~~~~~e~~~inp~gkVPvLvd~n~G~~I~ES~aIi~YL~~~y 217 (274)
|.++||+...| +|+||+++|+++|++|+.+.+. .++++..++|+++||.|+||+|++ +|.+|+||.+|++||+++|
T Consensus 1 ~~~~ly~~~~~-~~~rv~~~L~e~gl~~e~~~v~~~~~~~~~~~~~~~nP~g~vP~L~~--~~~~l~ES~aI~~YL~~~~ 77 (215)
T PLN02395 1 MVLKVYGPAFA-SPKRALVTLIEKGVEFETVPVDLMKGEHKQPEYLALQPFGVVPVIVD--GDYKIFESRAIMRYYAEKY 77 (215)
T ss_pred CeEEEEcCCcC-cHHHHHHHHHHcCCCceEEEeccccCCcCCHHHHhhCCCCCCCEEEE--CCEEEEcHHHHHHHHHHHc
Confidence 46899997665 5999999999999999999884 445566789999999999999998 8889999999999999999
Q ss_pred CC---CCCCcchh-hhhhhhHHh
Q 024010 218 GD---GSVPFMLS-LGLLTTLTE 236 (274)
Q Consensus 218 ~~---~~~P~~~~-~~~~~~l~~ 236 (274)
+. ..+|.+.. ++.+.....
T Consensus 78 ~~~~~~l~p~~~~~~~~~~~~~~ 100 (215)
T PLN02395 78 RSQGPDLLGKTIEERGQVEQWLD 100 (215)
T ss_pred CCCCcCcCCCChhHHHHHHHHHH
Confidence 74 36776533 344444433
No 32
>cd03038 GST_N_etherase_LigE GST_N family, Beta etherase LigE subfamily; composed of proteins similar to Sphingomonas paucimobilis beta etherase, LigE, a GST-like protein that catalyzes the cleavage of the beta-aryl ether linkages present in low-moleculer weight lignins using GSH as the hydrogen donor. This reaction is an essential step in the degradation of lignin, a complex phenolic polymer that is the most abundant aromatic material in the biosphere. The beta etherase activity of LigE is enantioselective and it complements the activity of the other GST family beta etherase, LigF.
Probab=99.58 E-value=5.9e-15 Score=111.97 Aligned_cols=69 Identities=25% Similarity=0.279 Sum_probs=58.7
Q ss_pred CCCccHHHHHHHHHHcCCCeEEEEcC-CCCCCChhHHHhhCCCCceeEEEEcCC-CceeeCHHHHHHHHhhhcC
Q 024010 147 ESCPFCRKVREIVAVLDLDVLYYPCP-RNGPNFRPKVLQMGGKKQFPYMVDPNT-GVSMYESDNIIKYLVGKYG 218 (274)
Q Consensus 147 ~~cP~CrkVr~~L~e~gI~ye~~~v~-~~~~~~~~e~~~inp~gkVPvLvd~n~-G~~I~ES~aIi~YL~~~y~ 218 (274)
..||+|+||+++|.++|++|+.+.+. .+..+..+++ ++||.++||+|++ + |.+|+||.+|++||+++|+
T Consensus 14 ~~Sp~~~kv~~~L~~~~i~~~~~~~~~~~~~~~~~~~-~~~p~~~vP~L~~--~~~~~l~eS~aI~~yL~~~~p 84 (84)
T cd03038 14 AFSPNVWKTRLALNHKGLEYKTVPVEFPDIPPILGEL-TSGGFYTVPVIVD--GSGEVIGDSFAIAEYLEEAYP 84 (84)
T ss_pred CcCChhHHHHHHHHhCCCCCeEEEecCCCcccccccc-cCCCCceeCeEEE--CCCCEEeCHHHHHHHHHHhCc
Confidence 57999999999999999999998874 2223334455 8999999999998 5 8899999999999999885
No 33
>KOG0867 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.58 E-value=9.2e-15 Score=131.24 Aligned_cols=106 Identities=25% Similarity=0.346 Sum_probs=93.6
Q ss_pred CCeEEEEcCCCccHHHHHHHHHHcCCCeEEEEc-CCCCCCChhHHHhhCCCCceeEEEEcCCCceeeCHHHHHHHHhhhc
Q 024010 139 KPIEIYEYESCPFCRKVREIVAVLDLDVLYYPC-PRNGPNFRPKVLQMGGKKQFPYMVDPNTGVSMYESDNIIKYLVGKY 217 (274)
Q Consensus 139 ~~l~LY~~~~cP~CrkVr~~L~e~gI~ye~~~v-~~~~~~~~~e~~~inp~gkVPvLvd~n~G~~I~ES~aIi~YL~~~y 217 (274)
|.++||+++.+|.|++|.++++++|++|+.+.+ ..++++..++|+++||.++||+|+| +|..++||.||+.||+++|
T Consensus 1 ~~~~ly~~~~s~~~r~vl~~~~~~~l~~e~~~v~~~~ge~~~pefl~~nP~~kVP~l~d--~~~~l~eS~AI~~Yl~~ky 78 (226)
T KOG0867|consen 1 MKLKLYGHLGSPPARAVLIAAKELGLEVELKPVDLVKGEQKSPEFLKLNPLGKVPALED--GGLTLWESHAILRYLAEKY 78 (226)
T ss_pred CCceEeecCCCcchHHHHHHHHHcCCceeEEEeeccccccCCHHHHhcCcCCCCCeEec--CCeEEeeHHHHHHHHHHHc
Confidence 468999999999999999999999999999988 5778899999999999999999999 8999999999999999999
Q ss_pred C--CC-CCCcchh-hhhhhhHHhhHHhhhccCC
Q 024010 218 G--DG-SVPFMLS-LGLLTTLTEGFAMIGRLGK 246 (274)
Q Consensus 218 ~--~~-~~P~~~~-~~~~~~l~~~~~~~~R~~~ 246 (274)
+ .. .+|.+.. ++.++..+.+....++...
T Consensus 79 ~~~~~~l~p~~~~~ra~v~~~l~~~~~~l~~~~ 111 (226)
T KOG0867|consen 79 GPLGGILLPKDLKERAIVDQWLEFENGVLDPVT 111 (226)
T ss_pred CCCCcccCCcCHHHHHHHHHHHHhhhccccccc
Confidence 6 22 5787764 4677888888888877654
No 34
>cd00570 GST_N_family Glutathione S-transferase (GST) family, N-terminal domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK subfamily, a member of the DsbA family). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical doma
Probab=99.57 E-value=1.3e-14 Score=102.31 Aligned_cols=71 Identities=21% Similarity=0.345 Sum_probs=62.3
Q ss_pred eEEEEcCCCccHHHHHHHHHHcCCCeEEEEcCCCCCCChhHHHhhCCCCceeEEEEcCCCceeeCHHHHHHHHh
Q 024010 141 IEIYEYESCPFCRKVREIVAVLDLDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMVDPNTGVSMYESDNIIKYLV 214 (274)
Q Consensus 141 l~LY~~~~cP~CrkVr~~L~e~gI~ye~~~v~~~~~~~~~e~~~inp~gkVPvLvd~n~G~~I~ES~aIi~YL~ 214 (274)
++||+++.||+|++++++|+++|++|+.+.+...... ..++.+++|.+++|+|++ +|.+++||.+|++||+
T Consensus 1 ~~ly~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~~~-~~~~~~~~~~~~~P~l~~--~~~~~~es~~I~~yl~ 71 (71)
T cd00570 1 LKLYYFPGSPRSLRVRLALEEKGLPYELVPVDLGEGE-QEEFLALNPLGKVPVLED--GGLVLTESLAILEYLA 71 (71)
T ss_pred CEEEeCCCCccHHHHHHHHHHcCCCcEEEEeCCCCCC-CHHHHhcCCCCCCCEEEE--CCEEEEcHHHHHHHhC
Confidence 4899999999999999999999999999988543222 226899999999999999 7899999999999985
No 35
>cd03039 GST_N_Sigma_like GST_N family, Class Sigma_like; composed of GSTs belonging to class Sigma and similar proteins, including GSTs from class Mu, Pi and Alpha. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Vertebrate class Sigma GSTs are characterized as GSH-dependent hematopoietic prostaglandin (PG) D synthases and are responsible for the production of PGD2 by catalyzing the isomerization of PGH2. The functions of PGD2 include the maintenance of body temperature, inhibition of platelet aggregation, bronchoconstriction, vasodilation and mediation of allergy and inflammation. Other class Sigma
Probab=99.57 E-value=5e-15 Score=108.95 Aligned_cols=72 Identities=13% Similarity=0.071 Sum_probs=63.0
Q ss_pred eEEEEcCCCccHHHHHHHHHHcCCCeEEEEcCCCCCCChhHHHhhCCCCceeEEEEcCCCceeeCHHHHHHHHhh
Q 024010 141 IEIYEYESCPFCRKVREIVAVLDLDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMVDPNTGVSMYESDNIIKYLVG 215 (274)
Q Consensus 141 l~LY~~~~cP~CrkVr~~L~e~gI~ye~~~v~~~~~~~~~e~~~inp~gkVPvLvd~n~G~~I~ES~aIi~YL~~ 215 (274)
++||+++.|++|++||++|+++|++|+.+.+.... ....+|.++||.++||+|++ +|.+|+||.+|++||++
T Consensus 1 ~~Ly~~~~~~~~~~v~~~l~~~gi~~e~~~~~~~~-~~~~~~~~~~p~~~vP~L~~--~~~~l~es~aI~~yL~~ 72 (72)
T cd03039 1 YKLTYFNIRGRGEPIRLLLADAGVEYEDVRITYEE-WPELDLKPTLPFGQLPVLEI--DGKKLTQSNAILRYLAR 72 (72)
T ss_pred CEEEEEcCcchHHHHHHHHHHCCCCcEEEEeCHHH-hhhhhhccCCcCCCCCEEEE--CCEEEEecHHHHHHhhC
Confidence 58999999999999999999999999999885321 22345889999999999999 78999999999999974
No 36
>cd03080 GST_N_Metaxin_like GST_N family, Metaxin subfamily, Metaxin-like proteins; a heterogenous group of proteins, predominantly uncharacterized, with similarity to metaxins and GSTs. Metaxin 1 is a component of a preprotein import complex of the mitochondrial outer membrane. It extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. In humans, alterations in the metaxin gene may be associated with Gaucher disease. One characterized member of this subgroup is a novel GST from Rhodococcus with toluene o-monooxygenase and gamma-glutamylcysteine synthetase activities. Also members are the cadmium-inducible lysosomal protein CDR-1 and its homologs from C. elegans, and the failed axon connections (fax) protein from Drosophila. CDR-1 is an integral membrane protein that functions to protect against cadmium toxicity and may also have a role in osmoregulation to maintain salt balance in C. ele
Probab=99.57 E-value=1e-14 Score=108.71 Aligned_cols=67 Identities=25% Similarity=0.424 Sum_probs=60.5
Q ss_pred eEEEEcC-------CCccHHHHHHHHHHcCCCeEEEEcCCCCCCChhHHHhhCCCCceeEEEEcCCCceeeCHHHHHHHH
Q 024010 141 IEIYEYE-------SCPFCRKVREIVAVLDLDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMVDPNTGVSMYESDNIIKYL 213 (274)
Q Consensus 141 l~LY~~~-------~cP~CrkVr~~L~e~gI~ye~~~v~~~~~~~~~e~~~inp~gkVPvLvd~n~G~~I~ES~aIi~YL 213 (274)
++||++. .||+|+||+++|+++|++|+.+.+.. .+++|.++||+|++ +|.+|+||.+|++||
T Consensus 2 ~~L~~~~~~~~~~~~sp~~~~v~~~L~~~gi~~~~~~~~~---------~~~~p~g~vPvl~~--~g~~l~eS~~I~~yL 70 (75)
T cd03080 2 ITLYQFPRAFGVPSLSPFCLKVETFLRMAGIPYENKFGGL---------AKRSPKGKLPFIEL--NGEKIADSELIIDHL 70 (75)
T ss_pred EEEEecCCCCCCCCCCHHHHHHHHHHHHCCCCcEEeecCc---------ccCCCCCCCCEEEE--CCEEEcCHHHHHHHH
Confidence 6899998 57999999999999999999987632 26899999999999 789999999999999
Q ss_pred hhhcC
Q 024010 214 VGKYG 218 (274)
Q Consensus 214 ~~~y~ 218 (274)
+++|+
T Consensus 71 ~~~~~ 75 (75)
T cd03080 71 EEKYG 75 (75)
T ss_pred HHHcC
Confidence 99986
No 37
>PRK10387 glutaredoxin 2; Provisional
Probab=99.56 E-value=1.7e-14 Score=125.28 Aligned_cols=77 Identities=30% Similarity=0.530 Sum_probs=65.9
Q ss_pred eEEEEcCCCccHHHHHHHHHHcCCCeEEEEcCCCCCCChhHHHhhCCCCceeEEE-EcCCCceeeCHHHHHHHHhhhcCC
Q 024010 141 IEIYEYESCPFCRKVREIVAVLDLDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMV-DPNTGVSMYESDNIIKYLVGKYGD 219 (274)
Q Consensus 141 l~LY~~~~cP~CrkVr~~L~e~gI~ye~~~v~~~~~~~~~e~~~inp~gkVPvLv-d~n~G~~I~ES~aIi~YL~~~y~~ 219 (274)
|+||++..||+|+||+++|+++||+|+.+.+... ++.. ..++||.++||+|+ + +|.+|+||.+|++||+++|+.
T Consensus 1 ~~Ly~~~~sp~~~kv~~~L~~~gi~y~~~~~~~~-~~~~--~~~~~p~~~VPvL~~~--~g~~l~eS~aI~~yL~~~~~~ 75 (210)
T PRK10387 1 MKLYIYDHCPFCVKARMIFGLKNIPVELIVLAND-DEAT--PIRMIGQKQVPILQKD--DGSYMPESLDIVHYIDELDGK 75 (210)
T ss_pred CEEEeCCCCchHHHHHHHHHHcCCCeEEEEcCCC-chhh--HHHhcCCcccceEEec--CCeEecCHHHHHHHHHHhCCC
Confidence 5899999999999999999999999999887432 2222 26789999999995 5 789999999999999999987
Q ss_pred CCC
Q 024010 220 GSV 222 (274)
Q Consensus 220 ~~~ 222 (274)
...
T Consensus 76 ~~l 78 (210)
T PRK10387 76 PLL 78 (210)
T ss_pred ccC
Confidence 544
No 38
>PRK11752 putative S-transferase; Provisional
Probab=99.53 E-value=6.1e-14 Score=128.36 Aligned_cols=93 Identities=20% Similarity=0.377 Sum_probs=75.0
Q ss_pred CeEEEEcCCCccHHHHHHHHHHc------CCCeEEEEcC-CCCCCChhHHHhhCCCCceeEEEEcCC--CceeeCHHHHH
Q 024010 140 PIEIYEYESCPFCRKVREIVAVL------DLDVLYYPCP-RNGPNFRPKVLQMGGKKQFPYMVDPNT--GVSMYESDNII 210 (274)
Q Consensus 140 ~l~LY~~~~cP~CrkVr~~L~e~------gI~ye~~~v~-~~~~~~~~e~~~inp~gkVPvLvd~n~--G~~I~ES~aIi 210 (274)
.++||+.. ||+|+||+++|+++ |++|+.+.+. ..+++..++|+++||.++||+|++.++ |.+|+||.+|+
T Consensus 44 ~~~Ly~~~-s~~~~rV~i~L~e~~~~~~~gl~ye~~~v~~~~~~~~~~e~~~iNP~GkVP~Lv~~dg~~~~~L~ES~AIl 122 (264)
T PRK11752 44 PLQLYSLG-TPNGQKVTIMLEELLALGVKGAEYDAWLIRIGEGDQFSSGFVEINPNSKIPALLDRSGNPPIRVFESGAIL 122 (264)
T ss_pred CeEEecCC-CCchHHHHHHHHHHHhccCCCCceEEEEecCccccccCHHHHhhCCCCCCCEEEeCCCCCCeEEEcHHHHH
Confidence 59999875 99999999999997 8999998884 445566889999999999999998422 47999999999
Q ss_pred HHHhhhcCCCCCCcchh-hhhhhhH
Q 024010 211 KYLVGKYGDGSVPFMLS-LGLLTTL 234 (274)
Q Consensus 211 ~YL~~~y~~~~~P~~~~-~~~~~~l 234 (274)
+||+++|+. .+|.+.. ++.+...
T Consensus 123 ~YL~~~~~~-L~P~~~~era~v~~w 146 (264)
T PRK11752 123 LYLAEKFGA-FLPKDLAARTETLNW 146 (264)
T ss_pred HHHHHhcCC-cCCCCHHHHHHHHHH
Confidence 999999974 6775432 3444333
No 39
>TIGR02182 GRXB Glutaredoxin, GrxB family. This model includes the highly abundant E. coli GrxB (Grx2) glutaredoxin which is notably longer than either GrxA or GrxC. Unlike the other two E. coli glutaredoxins, GrxB appears to be unable to reduce ribonucleotide reductase, and may have more to do with resistance to redox stress.
Probab=99.51 E-value=7.7e-14 Score=122.95 Aligned_cols=76 Identities=29% Similarity=0.507 Sum_probs=65.5
Q ss_pred EEEEcCCCccHHHHHHHHHHcCCCeEEEEcCCCCCCChhHHHhhCCCCceeEEE-EcCCCceeeCHHHHHHHHhhhcCCC
Q 024010 142 EIYEYESCPFCRKVREIVAVLDLDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMV-DPNTGVSMYESDNIIKYLVGKYGDG 220 (274)
Q Consensus 142 ~LY~~~~cP~CrkVr~~L~e~gI~ye~~~v~~~~~~~~~e~~~inp~gkVPvLv-d~n~G~~I~ES~aIi~YL~~~y~~~ 220 (274)
+||++..||||+|||++|+++|++|+.+++..+ ++ ....++||.++||+|+ + +|.+|+||.+|++||+++|+..
T Consensus 1 ~Ly~~~~sp~~~kvr~~L~~~gl~~e~~~~~~~-~~--~~~~~~np~g~vP~l~~~--~g~~l~es~~I~~yL~~~~~~~ 75 (209)
T TIGR02182 1 KLYIYDHCPFCVRARMIFGLKNIPVEKHVLLND-DE--ETPIRMIGAKQVPILQKD--DGRAMPESLDIVAYFDKLDGEP 75 (209)
T ss_pred CeecCCCCChHHHHHHHHHHcCCCeEEEECCCC-cc--hhHHHhcCCCCcceEEee--CCeEeccHHHHHHHHHHhCCCc
Confidence 589999999999999999999999999887432 22 2347899999999998 6 8899999999999999999865
Q ss_pred CC
Q 024010 221 SV 222 (274)
Q Consensus 221 ~~ 222 (274)
.+
T Consensus 76 ~~ 77 (209)
T TIGR02182 76 LL 77 (209)
T ss_pred cC
Confidence 43
No 40
>TIGR01262 maiA maleylacetoacetate isomerase. Maleylacetoacetate isomerase is an enzyme of tyrosine and phenylalanine catabolism. It requires glutathione and belongs by homology to the zeta family of glutathione S-transferases. The enzyme (EC 5.2.1.2) is described as active also on maleylpyruvate, and the example from a Ralstonia sp. catabolic plasmid is described as a maleylpyruvate isomerase involved in gentisate catabolism.
Probab=99.49 E-value=1.1e-13 Score=120.20 Aligned_cols=92 Identities=24% Similarity=0.337 Sum_probs=75.5
Q ss_pred EEEEcCCCccHHHHHHHHHHcCCCeEEEEcCC--CCCCChhHHHhhCCCCceeEEEEcCCCceeeCHHHHHHHHhhhcCC
Q 024010 142 EIYEYESCPFCRKVREIVAVLDLDVLYYPCPR--NGPNFRPKVLQMGGKKQFPYMVDPNTGVSMYESDNIIKYLVGKYGD 219 (274)
Q Consensus 142 ~LY~~~~cP~CrkVr~~L~e~gI~ye~~~v~~--~~~~~~~e~~~inp~gkVPvLvd~n~G~~I~ES~aIi~YL~~~y~~ 219 (274)
+||++..||+|++|+++|.++||+|+.+.+.. .+.+..+++.++||.++||+|++ +|.+|+||.+|++||+++|+.
T Consensus 1 ~Ly~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~nP~g~vP~L~~--~g~~l~ES~aI~~yl~~~~~~ 78 (210)
T TIGR01262 1 KLYSYWRSSCSYRVRIALALKGIDYEYVPVNLLRDGEQRSPEFLALNPQGLVPTLDI--DGEVLTQSLAIIEYLEETYPD 78 (210)
T ss_pred CcccCCCCCchHHHHHHHHHCCCCceEEecccccccccCChhhhhcCCCCcCCEEEE--CCEEeecHHHHHHHHHHhCCC
Confidence 48999999999999999999999999988853 23445678999999999999998 889999999999999999975
Q ss_pred C-CCCcchh-hhhhhhHH
Q 024010 220 G-SVPFMLS-LGLLTTLT 235 (274)
Q Consensus 220 ~-~~P~~~~-~~~~~~l~ 235 (274)
. .+|.+.. ++.+..+.
T Consensus 79 ~~l~p~~~~~~a~~~~~~ 96 (210)
T TIGR01262 79 PPLLPADPIKRARVRALA 96 (210)
T ss_pred CCCCCCCHHHHHHHHHHH
Confidence 4 6775432 34444443
No 41
>PF02798 GST_N: Glutathione S-transferase, N-terminal domain; InterPro: IPR004045 In eukaryotes, glutathione S-transferases (GSTs) participate in the detoxification of reactive electrophillic compounds by catalysing their conjugation to glutathione. The GST domain is also found in S-crystallins from squid, and proteins with no known GST activity, such as eukaryotic elongation factors 1-gamma and the HSP26 family of stress-related proteins, which include auxin-regulated proteins in plants and stringent starvation proteins in Escherichia coli. The major lens polypeptide of Cephalopoda is also a GST [, , , ]. Bacterial GSTs of known function often have a specific, growth-supporting role in biodegradative metabolism: epoxide ring opening and tetrachlorohydroquinone reductive dehalogenation are two examples of the reactions catalysed by these bacterial GSTs. Some regulatory proteins, like the stringent starvation proteins, also belong to the GST family [, ]. GST seems to be absent from Archaea in which gamma-glutamylcysteine substitute to glutathione as major thiol. Soluble GSTs activate glutathione (GSH) to GS-. In many GSTs, this is accomplished by a Tyr at H-bonding distance from the sulphur of GSH. These enzymes catalyse nucleophilic attack by reduced glutathione (GSH) on nonpolar compounds that contain an electrophillic carbon, nitrogen, or sulphur atom []. Glutathione S-transferases form homodimers, but in eukaryotes can also form heterodimers of the A1 and A2 or YC1 and YC2 subunits. The homodimeric enzymes display a conserved structural fold, with each monomer composed of two distinct domains []. The N-terminal domain forms a thioredoxin-like fold that binds the glutathione moiety, while the C-terminal domain contains several hydrophobic alpha-helices that specifically bind hydrophobic substrates. This entry represents the N-terminal domain of GST.; GO: 0005515 protein binding; PDB: 2VCT_H 2WJU_B 4ACS_A 1BYE_D 1AXD_B 2VCV_P 1TDI_A 1JLV_D 1Y6E_A 1U88_B ....
Probab=99.49 E-value=1.1e-13 Score=103.93 Aligned_cols=73 Identities=19% Similarity=0.351 Sum_probs=60.9
Q ss_pred CeEEEEcCCCccHHHHHHHHHHcCCCeEEEEcC-CCCCCChhHHHhhCCC-CceeEEEEcCCCceeeCHHHHHHHHhh
Q 024010 140 PIEIYEYESCPFCRKVREIVAVLDLDVLYYPCP-RNGPNFRPKVLQMGGK-KQFPYMVDPNTGVSMYESDNIIKYLVG 215 (274)
Q Consensus 140 ~l~LY~~~~cP~CrkVr~~L~e~gI~ye~~~v~-~~~~~~~~e~~~inp~-gkVPvLvd~n~G~~I~ES~aIi~YL~~ 215 (274)
++++|..++ .|.++|++|+++|++|+.+.+. ..++++.++|.+.||. ++||+|+++ +|.+|+||.||++||++
T Consensus 2 ~l~l~~~~~--~~~~~r~~l~~~gv~~e~~~v~~~~~~~~~~e~~~~~p~~g~vP~l~~~-~~~~l~es~AI~~YLa~ 76 (76)
T PF02798_consen 2 TLTLYNGRG--RSERIRLLLAEKGVEYEDVRVDFEKGEHKSPEFLAINPMFGKVPALEDG-DGFVLTESNAILRYLAR 76 (76)
T ss_dssp EEEEESSST--TTHHHHHHHHHTT--EEEEEEETTTTGGGSHHHHHHTTTSSSSSEEEET-TTEEEESHHHHHHHHHH
T ss_pred EEEEECCCC--chHHHHHHHHHhcccCceEEEecccccccchhhhhcccccceeeEEEEC-CCCEEEcHHHHHHHhCC
Confidence 456666555 8999999999999999999885 4556667999999999 999999992 39999999999999985
No 42
>cd03077 GST_N_Alpha GST_N family, Class Alpha subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Alpha subfamily is composed of eukaryotic GSTs which can form homodimer and heterodimers. There are at least six types of class Alpha GST subunits in rats, four of which have human counterparts, resulting in many possible isoenzymes with different activities, tissue distribution and substrate specificities. Human GSTA1-1 and GSTA2-2 show high GSH peroxidase activity. GSTA3-3 catalyzes the isomerization of intermediates in steroid hormone biosynthesis. GSTA4-4 preferentially catalyzes the
Probab=99.47 E-value=2.8e-13 Score=102.36 Aligned_cols=72 Identities=14% Similarity=0.206 Sum_probs=61.8
Q ss_pred CeEEEEcCCCccHHHHHHHHHHcCCCeEEEEcCCCCCCChhHHHhhC-----CCCceeEEEEcCCCceeeCHHHHHHHHh
Q 024010 140 PIEIYEYESCPFCRKVREIVAVLDLDVLYYPCPRNGPNFRPKVLQMG-----GKKQFPYMVDPNTGVSMYESDNIIKYLV 214 (274)
Q Consensus 140 ~l~LY~~~~cP~CrkVr~~L~e~gI~ye~~~v~~~~~~~~~e~~~in-----p~gkVPvLvd~n~G~~I~ES~aIi~YL~ 214 (274)
+++||+++.++.|++++++|+++|++|+.+.+.. .+++.+.+ +.++||+|++ ||.+|+||.||++||+
T Consensus 1 ~~~Ly~~~~~~~~~~v~~~l~~~gi~~e~~~v~~-----~~~~~~~~~~~~~~~g~vP~L~~--~g~~l~ES~AI~~YL~ 73 (79)
T cd03077 1 KPVLHYFNGRGRMESIRWLLAAAGVEFEEKFIES-----AEDLEKLKKDGSLMFQQVPMVEI--DGMKLVQTRAILNYIA 73 (79)
T ss_pred CCEEEEeCCCChHHHHHHHHHHcCCCcEEEEecc-----HHHHHhhccccCCCCCCCCEEEE--CCEEEeeHHHHHHHHH
Confidence 3589999999999999999999999999998743 12444444 5899999998 8899999999999999
Q ss_pred hhcC
Q 024010 215 GKYG 218 (274)
Q Consensus 215 ~~y~ 218 (274)
++|+
T Consensus 74 ~~~~ 77 (79)
T cd03077 74 GKYN 77 (79)
T ss_pred HHcC
Confidence 9987
No 43
>PLN02378 glutathione S-transferase DHAR1
Probab=99.47 E-value=1.3e-13 Score=121.62 Aligned_cols=72 Identities=18% Similarity=0.202 Sum_probs=63.3
Q ss_pred EcCCCccHHHHHHHHHHcCCCeEEEEcCCCCCCChhHHHhhCCCCceeEEEEcCCCceeeCHHHHHHHHhhhcCCC
Q 024010 145 EYESCPFCRKVREIVAVLDLDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMVDPNTGVSMYESDNIIKYLVGKYGDG 220 (274)
Q Consensus 145 ~~~~cP~CrkVr~~L~e~gI~ye~~~v~~~~~~~~~e~~~inp~gkVPvLvd~n~G~~I~ES~aIi~YL~~~y~~~ 220 (274)
.+..||||+||+++|+++|++|+.+.++.. +..++|+++||.|+||+|++ +|.+|+||.+|++||+++|+..
T Consensus 16 ~~~~~p~~~rv~~~L~e~gl~~e~~~v~~~--~~~~~~l~inP~G~VPvL~~--~~~~l~ES~aI~~YL~~~~~~~ 87 (213)
T PLN02378 16 HLGDCPFSQRALLTLEEKSLTYKIHLINLS--DKPQWFLDISPQGKVPVLKI--DDKWVTDSDVIVGILEEKYPDP 87 (213)
T ss_pred CCCCCcchHHHHHHHHHcCCCCeEEEeCcc--cCCHHHHHhCCCCCCCEEEE--CCEEecCHHHHHHHHHHhCCCC
Confidence 345699999999999999999999988542 24568999999999999998 7889999999999999999754
No 44
>cd03075 GST_N_Mu GST_N family, Class Mu subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Mu subfamily is composed of eukaryotic GSTs. In rats, at least six distinct class Mu subunits have been identified, with homologous genes in humans for five of these subunits. Class Mu GSTs can form homodimers and heterodimers, giving a large number of possible isoenzymes that can be formed, all with overlapping activities but different substrate specificities. They are the most abundant GSTs in human liver, skeletal muscle and brain, and are believed to provide protection against diseases inc
Probab=99.47 E-value=2.1e-13 Score=104.03 Aligned_cols=74 Identities=16% Similarity=0.295 Sum_probs=61.6
Q ss_pred EEEEcCCCccHHHHHHHHHHcCCCeEEEEcC-CCCCCC-hhHHHhh-----CCCCceeEEEEcCCCceeeCHHHHHHHHh
Q 024010 142 EIYEYESCPFCRKVREIVAVLDLDVLYYPCP-RNGPNF-RPKVLQM-----GGKKQFPYMVDPNTGVSMYESDNIIKYLV 214 (274)
Q Consensus 142 ~LY~~~~cP~CrkVr~~L~e~gI~ye~~~v~-~~~~~~-~~e~~~i-----np~gkVPvLvd~n~G~~I~ES~aIi~YL~ 214 (274)
+||++..++.|++++++|+++|++|+.+.+. .++++. .+++.+. .|.++||+|+| ||.+|+||.||++||+
T Consensus 2 ~l~y~~~~~~~~~~~~~l~~~gi~~e~~~v~~~~~~~~~~~~~~~~~~~~~~P~g~vP~L~~--~g~~l~ES~AIl~YLa 79 (82)
T cd03075 2 TLGYWDIRGLAQPIRLLLEYTGEKYEEKRYELGDAPDYDRSQWLNEKFKLGLDFPNLPYYID--GDVKLTQSNAILRYIA 79 (82)
T ss_pred EEEEeCCccccHHHHHHHHHcCCCcEEEEeccCCccccchHhhhccchhcCCcCCCCCEEEE--CCEEEeehHHHHHHHh
Confidence 6899999999999999999999999999884 333332 3455432 29999999999 8899999999999999
Q ss_pred hhc
Q 024010 215 GKY 217 (274)
Q Consensus 215 ~~y 217 (274)
++|
T Consensus 80 ~~~ 82 (82)
T cd03075 80 RKH 82 (82)
T ss_pred hcC
Confidence 875
No 45
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=99.46 E-value=2.9e-13 Score=102.32 Aligned_cols=74 Identities=19% Similarity=0.347 Sum_probs=65.6
Q ss_pred CCCCeEEEEcCCCccHHHHHHHHHHcCCCeEEEEcCCCCCCChhHHHhhCCCCceeEEEEcCCCceeeCHHHHHHHHh
Q 024010 137 PEKPIEIYEYESCPFCRKVREIVAVLDLDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMVDPNTGVSMYESDNIIKYLV 214 (274)
Q Consensus 137 ~~~~l~LY~~~~cP~CrkVr~~L~e~gI~ye~~~v~~~~~~~~~e~~~inp~gkVPvLvd~n~G~~I~ES~aIi~YL~ 214 (274)
..+.++||+.++||+|++++.+|+++|++|+++++..+ ....++.++++..+||++++ +|..|+++++|.+||+
T Consensus 6 ~~~~V~ly~~~~Cp~C~~ak~~L~~~gi~y~~idi~~~--~~~~~~~~~~g~~~vP~i~i--~g~~igG~~~l~~~l~ 79 (79)
T TIGR02190 6 KPESVVVFTKPGCPFCAKAKATLKEKGYDFEEIPLGND--ARGRSLRAVTGATTVPQVFI--GGKLIGGSDELEAYLA 79 (79)
T ss_pred CCCCEEEEECCCCHhHHHHHHHHHHcCCCcEEEECCCC--hHHHHHHHHHCCCCcCeEEE--CCEEEcCHHHHHHHhC
Confidence 45679999999999999999999999999999998543 23467888899999999999 8999999999999985
No 46
>cd03043 GST_N_1 GST_N family, unknown subfamily 1; composed of uncharacterized proteins, predominantly from bacteria, with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=99.46 E-value=2.8e-13 Score=100.81 Aligned_cols=68 Identities=18% Similarity=0.337 Sum_probs=59.9
Q ss_pred EcCCCccHHHHHHHHHHcCCCeEEEEcCCCCCCChhHHHhhCCCCceeEEEEcCCCceeeCHHHHHHHHh
Q 024010 145 EYESCPFCRKVREIVAVLDLDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMVDPNTGVSMYESDNIIKYLV 214 (274)
Q Consensus 145 ~~~~cP~CrkVr~~L~e~gI~ye~~~v~~~~~~~~~e~~~inp~gkVPvLvd~n~G~~I~ES~aIi~YL~ 214 (274)
....|++|++++++|+++|++|+.+.+........++|.++||.++||+|++ +|.+|+||.+|++||+
T Consensus 6 ~~~~s~~s~~v~~~L~~~gl~~e~~~v~~~~~~~~~~~~~~nP~g~vP~L~~--~g~~l~eS~aI~~YL~ 73 (73)
T cd03043 6 NKNYSSWSLRPWLLLKAAGIPFEEILVPLYTPDTRARILEFSPTGKVPVLVD--GGIVVWDSLAICEYLA 73 (73)
T ss_pred CCCCCHHHHHHHHHHHHcCCCCEEEEeCCCCccccHHHHhhCCCCcCCEEEE--CCEEEEcHHHHHHHhC
Confidence 4568999999999999999999999885433345689999999999999998 8899999999999984
No 47
>PRK10357 putative glutathione S-transferase; Provisional
Probab=99.46 E-value=3e-13 Score=117.22 Aligned_cols=83 Identities=17% Similarity=0.169 Sum_probs=69.7
Q ss_pred eEEEEcCCCccHHHHHHHHHHcCCCeEEEEcCCCCCCChhHHHhhCCCCceeEEEEcCCCceeeCHHHHHHHHhhhcCCC
Q 024010 141 IEIYEYESCPFCRKVREIVAVLDLDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMVDPNTGVSMYESDNIIKYLVGKYGDG 220 (274)
Q Consensus 141 l~LY~~~~cP~CrkVr~~L~e~gI~ye~~~v~~~~~~~~~e~~~inp~gkVPvLvd~n~G~~I~ES~aIi~YL~~~y~~~ 220 (274)
++||++..||++++|+++|+++|++|+.+.+... ...+++.++||.++||+|+++ +|.+|+||.+|++||+++|+..
T Consensus 1 ~~Ly~~~~s~~~~~v~~~L~~~gv~ye~~~~~~~--~~~~~~~~~nP~g~vP~L~~~-~g~~l~eS~aI~~yL~~~~~~~ 77 (202)
T PRK10357 1 MKLIGSYTSPFVRKISILLLEKGITFEFVNELPY--NADNGVAQYNPLGKVPALVTE-EGECWFDSPIIAEYIELLNVAP 77 (202)
T ss_pred CeeecCCCCchHHHHHHHHHHcCCCCeEEecCCC--CCchhhhhcCCccCCCeEEeC-CCCeeecHHHHHHHHHHhCCCC
Confidence 5899999999999999999999999999877421 224578889999999999842 7889999999999999998653
Q ss_pred -CCCcch
Q 024010 221 -SVPFML 226 (274)
Q Consensus 221 -~~P~~~ 226 (274)
.+|.+.
T Consensus 78 ~l~p~~~ 84 (202)
T PRK10357 78 AMLPRDP 84 (202)
T ss_pred CCCCCCH
Confidence 677654
No 48
>PRK10542 glutathionine S-transferase; Provisional
Probab=99.46 E-value=3e-13 Score=116.75 Aligned_cols=78 Identities=15% Similarity=0.166 Sum_probs=66.4
Q ss_pred eEEEEcCCCccHHHHHHHHHHcCCCeEEEEcCC-CCC-CChhHHHhhCCCCceeEEEEcCCCceeeCHHHHHHHHhhhcC
Q 024010 141 IEIYEYESCPFCRKVREIVAVLDLDVLYYPCPR-NGP-NFRPKVLQMGGKKQFPYMVDPNTGVSMYESDNIIKYLVGKYG 218 (274)
Q Consensus 141 l~LY~~~~cP~CrkVr~~L~e~gI~ye~~~v~~-~~~-~~~~e~~~inp~gkVPvLvd~n~G~~I~ES~aIi~YL~~~y~ 218 (274)
|+||+...+ +|++++++|+++||+|+.+.+.. +++ +..++|.++||.|+||+|+++ ||.+|+||.+|++||+++|+
T Consensus 1 m~l~~~~~s-~~~~~~~~L~~~gi~~e~~~v~~~~~~~~~~~~~~~~nP~g~vPvL~~~-~g~~l~eS~aI~~YL~~~~~ 78 (201)
T PRK10542 1 MKLFYKPGA-CSLASHITLRESGLDFTLVSVDLAKKRLENGDDYLAINPKGQVPALLLD-DGTLLTEGVAIMQYLADSVP 78 (201)
T ss_pred CceeecccH-HHHHHHHHHHHcCCCceEEEeecccccccCChHHHHhCcCCCCCeEEeC-CCcEeecHHHHHHHHHHhCc
Confidence 589998755 79999999999999999998842 222 346789999999999999852 78999999999999999998
Q ss_pred CC
Q 024010 219 DG 220 (274)
Q Consensus 219 ~~ 220 (274)
..
T Consensus 79 ~~ 80 (201)
T PRK10542 79 DR 80 (201)
T ss_pred cc
Confidence 54
No 49
>cd03054 GST_N_Metaxin GST_N family, Metaxin subfamily; composed of metaxins and related proteins. Metaxin 1 is a component of a preprotein import complex of the mitochondrial outer membrane. It extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. In humans, alterations in the metaxin gene may be associated with Gaucher disease. Metaxin 2 binds to metaxin 1 and may also play a role in protein translocation into the mitochondria. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken and mammals. Sequence analysis suggests that all three metaxins share a common ancestry and that they possess similarity to GSTs. Also included in the subfamily are uncharacterized proteins with similarity to metaxins, including a novel GST from Rhodococcus with toluene o-monooxygenase and glutamylcysteine synthetase activities.
Probab=99.46 E-value=2.4e-13 Score=100.16 Aligned_cols=65 Identities=22% Similarity=0.385 Sum_probs=57.4
Q ss_pred eEEEEcC-------CCccHHHHHHHHHHcCCCeEEEEcCCCCCCChhHHHhhCCCCceeEEEEcCCCceeeCHHHHHHHH
Q 024010 141 IEIYEYE-------SCPFCRKVREIVAVLDLDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMVDPNTGVSMYESDNIIKYL 213 (274)
Q Consensus 141 l~LY~~~-------~cP~CrkVr~~L~e~gI~ye~~~v~~~~~~~~~e~~~inp~gkVPvLvd~n~G~~I~ES~aIi~YL 213 (274)
++||.+. .||+|++++++|+++|++|+.+.+... .++|.++||+|++ +|.+++||.+|++||
T Consensus 1 ~~L~~~~~~~~~~s~sp~~~~v~~~L~~~~i~~~~~~~~~~---------~~~p~g~vP~l~~--~g~~l~es~~I~~yL 69 (72)
T cd03054 1 LELYQWGRAFGLPSLSPECLKVETYLRMAGIPYEVVFSSNP---------WRSPTGKLPFLEL--NGEKIADSEKIIEYL 69 (72)
T ss_pred CEEEEeCCCCCCCCCCHHHHHHHHHHHhCCCceEEEecCCc---------ccCCCcccCEEEE--CCEEEcCHHHHHHHH
Confidence 4688887 899999999999999999999987421 1789999999999 889999999999999
Q ss_pred hhh
Q 024010 214 VGK 216 (274)
Q Consensus 214 ~~~ 216 (274)
+++
T Consensus 70 ~~~ 72 (72)
T cd03054 70 KKK 72 (72)
T ss_pred hhC
Confidence 874
No 50
>TIGR00862 O-ClC intracellular chloride channel protein. These proteins are thought to function in the regulation of the membrane potential and in transepithelial ion absorption and secretion in the kidney.
Probab=99.46 E-value=2e-13 Score=123.97 Aligned_cols=74 Identities=11% Similarity=0.165 Sum_probs=65.3
Q ss_pred cCCCccHHHHHHHHHHcCCCeEEEEcCCCCCCChhHHHhhCCCCceeEEEEcCCCceeeCHHHHHHHHhhhcCCCCCC
Q 024010 146 YESCPFCRKVREIVAVLDLDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMVDPNTGVSMYESDNIIKYLVGKYGDGSVP 223 (274)
Q Consensus 146 ~~~cP~CrkVr~~L~e~gI~ye~~~v~~~~~~~~~e~~~inp~gkVPvLvd~n~G~~I~ES~aIi~YL~~~y~~~~~P 223 (274)
...||||+||+++|.++||+|+.+.++.. +..++|+++||.++||+|++ +|.+|+||.+|++||+++|+.+.+|
T Consensus 16 ~~~cp~~~rv~i~L~ekgi~~e~~~vd~~--~~~~~fl~inP~g~vPvL~~--~g~~l~ES~aI~eYL~e~~~~~~~p 89 (236)
T TIGR00862 16 IGNCPFSQRLFMILWLKGVVFNVTTVDLK--RKPEDLQNLAPGTHPPFLTY--NTEVKTDVNKIEEFLEETLCPPRYP 89 (236)
T ss_pred CCCCHhHHHHHHHHHHcCCCcEEEEECCC--CCCHHHHHHCcCCCCCEEEE--CCEEeecHHHHHHHHHHHcCCCCCC
Confidence 35799999999999999999999998543 34689999999999999999 8999999999999999999764444
No 51
>KOG0406 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.46 E-value=4.6e-13 Score=121.07 Aligned_cols=85 Identities=18% Similarity=0.221 Sum_probs=75.7
Q ss_pred CCeEEEEcCCCccHHHHHHHHHHcCCCeEEEEcCCCCCCChhHHHhhC-CCCceeEEEEcCCCceeeCHHHHHHHHhhhc
Q 024010 139 KPIEIYEYESCPFCRKVREIVAVLDLDVLYYPCPRNGPNFRPKVLQMG-GKKQFPYMVDPNTGVSMYESDNIIKYLVGKY 217 (274)
Q Consensus 139 ~~l~LY~~~~cP~CrkVr~~L~e~gI~ye~~~v~~~~~~~~~e~~~in-p~gkVPvLvd~n~G~~I~ES~aIi~YL~~~y 217 (274)
..++||.+..|||++|++++|+++||+|+.++++.. ++.+.+++.| +.++||+|++ +|..|+||..|++||++.|
T Consensus 8 ~~vrL~~~w~sPfa~R~~iaL~~KgI~yE~veedl~--~Ks~~ll~~np~hkKVPvL~H--n~k~i~ESliiveYiDe~w 83 (231)
T KOG0406|consen 8 GTVKLLGMWFSPFAQRVRIALKLKGIPYEYVEEDLT--NKSEWLLEKNPVHKKVPVLEH--NGKPICESLIIVEYIDETW 83 (231)
T ss_pred CeEEEEEeecChHHHHHHHHHHhcCCceEEEecCCC--CCCHHHHHhccccccCCEEEE--CCceehhhHHHHHHHHhhc
Confidence 469999999999999999999999999999998543 3678999999 7899999999 8889999999999999999
Q ss_pred CC--CCCCcchh
Q 024010 218 GD--GSVPFMLS 227 (274)
Q Consensus 218 ~~--~~~P~~~~ 227 (274)
+. ..+|.|.-
T Consensus 84 ~~~~~iLP~DPy 95 (231)
T KOG0406|consen 84 PSGPPILPSDPY 95 (231)
T ss_pred cCCCCCCCCCHH
Confidence 84 36888753
No 52
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=99.41 E-value=1.3e-12 Score=96.43 Aligned_cols=71 Identities=17% Similarity=0.358 Sum_probs=63.4
Q ss_pred CeEEEEcCCCccHHHHHHHHHHcCCCeEEEEcCCCCCCChhHHHhhCCCCceeEEEEcCCCceeeCHHHHHHHHh
Q 024010 140 PIEIYEYESCPFCRKVREIVAVLDLDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMVDPNTGVSMYESDNIIKYLV 214 (274)
Q Consensus 140 ~l~LY~~~~cP~CrkVr~~L~e~gI~ye~~~v~~~~~~~~~e~~~inp~gkVPvLvd~n~G~~I~ES~aIi~YL~ 214 (274)
+++||+.++||+|.+++.+|++.|++|+++++..+. ...++.+.++..+||+++. ||..|+++++|.+||+
T Consensus 2 ~v~lys~~~Cp~C~~ak~~L~~~~i~~~~~~v~~~~--~~~~~~~~~g~~~vP~ifi--~g~~igg~~~l~~~l~ 72 (72)
T cd03029 2 SVSLFTKPGCPFCARAKAALQENGISYEEIPLGKDI--TGRSLRAVTGAMTVPQVFI--DGELIGGSDDLEKYFA 72 (72)
T ss_pred eEEEEECCCCHHHHHHHHHHHHcCCCcEEEECCCCh--hHHHHHHHhCCCCcCeEEE--CCEEEeCHHHHHHHhC
Confidence 689999999999999999999999999999986433 2456778889999999999 8999999999999985
No 53
>PLN02817 glutathione dehydrogenase (ascorbate)
Probab=99.37 E-value=1.6e-12 Score=119.78 Aligned_cols=71 Identities=23% Similarity=0.250 Sum_probs=63.0
Q ss_pred cCCCccHHHHHHHHHHcCCCeEEEEcCCCCCCChhHHHhhCCCCceeEEEEcCCCceeeCHHHHHHHHhhhcCCC
Q 024010 146 YESCPFCRKVREIVAVLDLDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMVDPNTGVSMYESDNIIKYLVGKYGDG 220 (274)
Q Consensus 146 ~~~cP~CrkVr~~L~e~gI~ye~~~v~~~~~~~~~e~~~inp~gkVPvLvd~n~G~~I~ES~aIi~YL~~~y~~~ 220 (274)
...||||+||+++|+++||+|+.+.+... +..++|+++||.++||+|++ +|.+|+||.+|++||+++|+..
T Consensus 70 ~g~cp~s~rV~i~L~ekgi~ye~~~vdl~--~~~~~fl~iNP~GkVPvL~~--d~~~L~ES~aI~~YL~e~~p~~ 140 (265)
T PLN02817 70 LGDCPFCQRVLLTLEEKHLPYDMKLVDLT--NKPEWFLKISPEGKVPVVKL--DEKWVADSDVITQALEEKYPDP 140 (265)
T ss_pred CCCCcHHHHHHHHHHHcCCCCEEEEeCcC--cCCHHHHhhCCCCCCCEEEE--CCEEEecHHHHHHHHHHHCCCC
Confidence 44599999999999999999999988542 34678999999999999998 6789999999999999999864
No 54
>PRK10638 glutaredoxin 3; Provisional
Probab=99.37 E-value=2.4e-12 Score=97.88 Aligned_cols=75 Identities=16% Similarity=0.380 Sum_probs=65.8
Q ss_pred CCCeEEEEcCCCccHHHHHHHHHHcCCCeEEEEcCCCCCCChhHHHhhCCCCceeEEEEcCCCceeeCHHHHHHHHhh
Q 024010 138 EKPIEIYEYESCPFCRKVREIVAVLDLDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMVDPNTGVSMYESDNIIKYLVG 215 (274)
Q Consensus 138 ~~~l~LY~~~~cP~CrkVr~~L~e~gI~ye~~~v~~~~~~~~~e~~~inp~gkVPvLvd~n~G~~I~ES~aIi~YL~~ 215 (274)
|.+++||+.++||||++++.+|+++|++|+++++..+. ...+++.+++|..+||+|++ +|..|++.+++.++-.+
T Consensus 1 m~~v~ly~~~~Cp~C~~a~~~L~~~gi~y~~~dv~~~~-~~~~~l~~~~g~~~vP~i~~--~g~~igG~~~~~~~~~~ 75 (83)
T PRK10638 1 MANVEIYTKATCPFCHRAKALLNSKGVSFQEIPIDGDA-AKREEMIKRSGRTTVPQIFI--DAQHIGGCDDLYALDAR 75 (83)
T ss_pred CCcEEEEECCCChhHHHHHHHHHHcCCCcEEEECCCCH-HHHHHHHHHhCCCCcCEEEE--CCEEEeCHHHHHHHHHc
Confidence 44799999999999999999999999999999986432 24678999999999999999 89999999999887653
No 55
>PTZ00057 glutathione s-transferase; Provisional
Probab=99.34 E-value=3.3e-12 Score=111.83 Aligned_cols=79 Identities=20% Similarity=0.230 Sum_probs=64.7
Q ss_pred CCeEEEEcCCCccHHHHHHHHHHcCCCeEEEEcCCCCCC--ChhHHH--hhCCCCceeEEEEcCCCceeeCHHHHHHHHh
Q 024010 139 KPIEIYEYESCPFCRKVREIVAVLDLDVLYYPCPRNGPN--FRPKVL--QMGGKKQFPYMVDPNTGVSMYESDNIIKYLV 214 (274)
Q Consensus 139 ~~l~LY~~~~cP~CrkVr~~L~e~gI~ye~~~v~~~~~~--~~~e~~--~inp~gkVPvLvd~n~G~~I~ES~aIi~YL~ 214 (274)
.+++||+++.++.|++||++|+++|++|+.+.+....+. ..+++. ++||.++||+|++ ||.+|+||.||++||+
T Consensus 3 ~~~~L~y~~~~~~~~~vrl~L~~~gi~ye~~~~~~~~~~~~~~~~~~~~~~nP~g~vP~L~~--~~~~l~eS~AI~~YLa 80 (205)
T PTZ00057 3 EEIVLYYFDARGKAELIRLIFAYLGIEYTDKRFGENGDAFIEFKNFKKEKDTPFEQVPILEM--DNIIFAQSQAIVRYLS 80 (205)
T ss_pred CceEEEecCCCcchHHHHHHHHHcCCCeEEEeccccchHHHHHHhccccCCCCCCCCCEEEE--CCEEEecHHHHHHHHH
Confidence 458999999999999999999999999999876321111 011222 4899999999999 8899999999999999
Q ss_pred hhcCC
Q 024010 215 GKYGD 219 (274)
Q Consensus 215 ~~y~~ 219 (274)
++|+.
T Consensus 81 ~~~~~ 85 (205)
T PTZ00057 81 KKYKI 85 (205)
T ss_pred HHcCC
Confidence 99974
No 56
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=99.25 E-value=3e-11 Score=92.12 Aligned_cols=77 Identities=18% Similarity=0.357 Sum_probs=66.9
Q ss_pred CCeEEEEcCCCccHHHHHHHHHH-----cCCCeEEEEcCCCCCCChhHHHhhCCC--CceeEEEEcCCCceeeCHHHHHH
Q 024010 139 KPIEIYEYESCPFCRKVREIVAV-----LDLDVLYYPCPRNGPNFRPKVLQMGGK--KQFPYMVDPNTGVSMYESDNIIK 211 (274)
Q Consensus 139 ~~l~LY~~~~cP~CrkVr~~L~e-----~gI~ye~~~v~~~~~~~~~e~~~inp~--gkVPvLvd~n~G~~I~ES~aIi~ 211 (274)
|.+++|+.++||+|.+++.+|++ .|++|+.+++..++. ..+++.+..+. .+||++++ ||..+++.++|.+
T Consensus 1 m~v~iy~~~~C~~C~~a~~~L~~l~~~~~~i~~~~idi~~~~~-~~~el~~~~~~~~~~vP~ifi--~g~~igg~~~~~~ 77 (85)
T PRK11200 1 MFVVIFGRPGCPYCVRAKELAEKLSEERDDFDYRYVDIHAEGI-SKADLEKTVGKPVETVPQIFV--DQKHIGGCTDFEA 77 (85)
T ss_pred CEEEEEeCCCChhHHHHHHHHHhhcccccCCcEEEEECCCChH-HHHHHHHHHCCCCCcCCEEEE--CCEEEcCHHHHHH
Confidence 57999999999999999999999 899999999864332 25567777665 69999999 8999999999999
Q ss_pred HHhhhcC
Q 024010 212 YLVGKYG 218 (274)
Q Consensus 212 YL~~~y~ 218 (274)
|+.+.|+
T Consensus 78 ~~~~~~~ 84 (85)
T PRK11200 78 YVKENLG 84 (85)
T ss_pred HHHHhcc
Confidence 9999886
No 57
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=99.25 E-value=2.4e-11 Score=90.05 Aligned_cols=69 Identities=14% Similarity=0.165 Sum_probs=61.7
Q ss_pred CeEEEEcCCCccHHHHHHHHHHcCCCeEEEEcCCCCCCChhHHHhhCCCCceeEEEEcCCCceeeCHHHHHH
Q 024010 140 PIEIYEYESCPFCRKVREIVAVLDLDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMVDPNTGVSMYESDNIIK 211 (274)
Q Consensus 140 ~l~LY~~~~cP~CrkVr~~L~e~gI~ye~~~v~~~~~~~~~e~~~inp~gkVPvLvd~n~G~~I~ES~aIi~ 211 (274)
.++||+.++||+|++++.+|+++||+|+++++..+ +...+++.++++..+||+++. +|..|++-+++.+
T Consensus 2 ~v~ly~~~~C~~C~ka~~~L~~~gi~~~~~di~~~-~~~~~el~~~~g~~~vP~v~i--~~~~iGg~~~~~~ 70 (73)
T cd03027 2 RVTIYSRLGCEDCTAVRLFLREKGLPYVEINIDIF-PERKAELEERTGSSVVPQIFF--NEKLVGGLTDLKS 70 (73)
T ss_pred EEEEEecCCChhHHHHHHHHHHCCCceEEEECCCC-HHHHHHHHHHhCCCCcCEEEE--CCEEEeCHHHHHh
Confidence 58999999999999999999999999999998653 335778999999999999999 8999999888765
No 58
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=99.23 E-value=3.8e-11 Score=91.77 Aligned_cols=75 Identities=15% Similarity=0.344 Sum_probs=61.0
Q ss_pred CCeEEEEcCCCccHHHHHHHHHHcCCCeEEEEcCCCCCCChhHHH-hhCCCCceeEEEEcCCCceeeCHHHHHHHHhh
Q 024010 139 KPIEIYEYESCPFCRKVREIVAVLDLDVLYYPCPRNGPNFRPKVL-QMGGKKQFPYMVDPNTGVSMYESDNIIKYLVG 215 (274)
Q Consensus 139 ~~l~LY~~~~cP~CrkVr~~L~e~gI~ye~~~v~~~~~~~~~e~~-~inp~gkVPvLvd~n~G~~I~ES~aIi~YL~~ 215 (274)
+.+++|+.++||||.+++.+|.++|++|+++++.........++. +.+|..+||++++ +|..++...++.++...
T Consensus 1 ~~v~iyt~~~CPyC~~ak~~L~~~g~~~~~i~~~~~~~~~~~~~~~~~~g~~tvP~I~i--~~~~igg~~d~~~~~~~ 76 (80)
T COG0695 1 ANVTIYTKPGCPYCKRAKRLLDRKGVDYEEIDVDDDEPEEAREMVKRGKGQRTVPQIFI--GGKHVGGCDDLDALEAK 76 (80)
T ss_pred CCEEEEECCCCchHHHHHHHHHHcCCCcEEEEecCCcHHHHHHHHHHhCCCCCcCEEEE--CCEEEeCcccHHHHHhh
Confidence 468999999999999999999999999999998654432344444 4559999999999 88888888777776654
No 59
>COG2999 GrxB Glutaredoxin 2 [Posttranslational modification, protein turnover, chaperones]
Probab=99.22 E-value=1.4e-11 Score=107.25 Aligned_cols=76 Identities=28% Similarity=0.513 Sum_probs=66.0
Q ss_pred eEEEEcCCCccHHHHHHHHHHcCCCeEEEEcCCCCCCChhHHHhhCCCCceeEEEEcCCCceeeCHHHHHHHHhhhcCCC
Q 024010 141 IEIYEYESCPFCRKVREIVAVLDLDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMVDPNTGVSMYESDNIIKYLVGKYGDG 220 (274)
Q Consensus 141 l~LY~~~~cP~CrkVr~~L~e~gI~ye~~~v~~~~~~~~~e~~~inp~gkVPvLvd~n~G~~I~ES~aIi~YL~~~y~~~ 220 (274)
|+||.|.+||||.|+|++.-.+||+++.+.+..+++. . =.++-|.++||+|+-+ +|..|.||.+|+.|+++.++.+
T Consensus 1 MkLYIYdHCPfcvrarmi~Gl~nipve~~vL~nDDe~-T--p~rmiG~KqVPiL~Ke-dg~~m~ESlDIV~y~d~~~~~~ 76 (215)
T COG2999 1 MKLYIYDHCPFCVRARMIFGLKNIPVELHVLLNDDEE-T--PIRMIGQKQVPILQKE-DGRAMPESLDIVHYVDELDGKP 76 (215)
T ss_pred CceeEeccChHHHHHHHHhhccCCChhhheeccCccc-C--hhhhhcccccceEEcc-ccccchhhhHHHHHHHHhcCch
Confidence 5899999999999999999999999999987654443 2 3567789999999854 8999999999999999999865
No 60
>TIGR02183 GRXA Glutaredoxin, GrxA family. This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.
Probab=99.21 E-value=6.9e-11 Score=90.94 Aligned_cols=75 Identities=15% Similarity=0.379 Sum_probs=63.6
Q ss_pred eEEEEcCCCccHHHHHHHHHHc-----CCCeEEEEcCCCCCCChhHHHhhCCC--CceeEEEEcCCCceeeCHHHHHHHH
Q 024010 141 IEIYEYESCPFCRKVREIVAVL-----DLDVLYYPCPRNGPNFRPKVLQMGGK--KQFPYMVDPNTGVSMYESDNIIKYL 213 (274)
Q Consensus 141 l~LY~~~~cP~CrkVr~~L~e~-----gI~ye~~~v~~~~~~~~~e~~~inp~--gkVPvLvd~n~G~~I~ES~aIi~YL 213 (274)
++||+.++||||.+++.+|+++ +++|+++++..++. ..+++.+..+. .+||++++ +|..|+++++|.+|+
T Consensus 2 V~vys~~~Cp~C~~ak~~L~~~~~~~~~i~~~~idi~~~~~-~~~~l~~~~g~~~~tVP~ifi--~g~~igG~~dl~~~~ 78 (86)
T TIGR02183 2 VVIFGRPGCPYCVRAKQLAEKLAIERADFEFRYIDIHAEGI-SKADLEKTVGKPVETVPQIFV--DEKHVGGCTDFEQLV 78 (86)
T ss_pred EEEEeCCCCccHHHHHHHHHHhCcccCCCcEEEEECCCCHH-HHHHHHHHhCCCCCCcCeEEE--CCEEecCHHHHHHHH
Confidence 6899999999999999999998 46788888754322 25567777776 79999999 899999999999999
Q ss_pred hhhcC
Q 024010 214 VGKYG 218 (274)
Q Consensus 214 ~~~y~ 218 (274)
.++|+
T Consensus 79 ~~~~~ 83 (86)
T TIGR02183 79 KENFD 83 (86)
T ss_pred Hhccc
Confidence 99875
No 61
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=99.20 E-value=6.3e-11 Score=87.27 Aligned_cols=72 Identities=18% Similarity=0.419 Sum_probs=61.7
Q ss_pred CeEEEEcCCCccHHHHHHHHHHcCCCeEEEEcCCCCCCChhHHHhhCCCC-ceeEEEEcCCCceeeCHHHHHHHHh
Q 024010 140 PIEIYEYESCPFCRKVREIVAVLDLDVLYYPCPRNGPNFRPKVLQMGGKK-QFPYMVDPNTGVSMYESDNIIKYLV 214 (274)
Q Consensus 140 ~l~LY~~~~cP~CrkVr~~L~e~gI~ye~~~v~~~~~~~~~e~~~inp~g-kVPvLvd~n~G~~I~ES~aIi~YL~ 214 (274)
+++||+.++||+|.+++.+|+++|++|+++++..+ +...+++.+..+.. +||+++. +|..+++.+++.++-.
T Consensus 1 ~i~ly~~~~Cp~C~~ak~~L~~~~i~~~~i~i~~~-~~~~~~~~~~~~~~~~vP~v~i--~g~~igg~~~~~~~~~ 73 (75)
T cd03418 1 KVEIYTKPNCPYCVRAKALLDKKGVDYEEIDVDGD-PALREEMINRSGGRRTVPQIFI--GDVHIGGCDDLYALER 73 (75)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCcEEEEECCCC-HHHHHHHHHHhCCCCccCEEEE--CCEEEeChHHHHHHHh
Confidence 48999999999999999999999999999998653 33456677776766 9999999 8999999999998754
No 62
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=99.20 E-value=7.1e-11 Score=84.34 Aligned_cols=70 Identities=14% Similarity=0.426 Sum_probs=62.1
Q ss_pred CeEEEEcCCCccHHHHHHHHHHcCCCeEEEEcCCCCCCChhHHHhhCCCCceeEEEEcCCCceeeCHHHHHHH
Q 024010 140 PIEIYEYESCPFCRKVREIVAVLDLDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMVDPNTGVSMYESDNIIKY 212 (274)
Q Consensus 140 ~l~LY~~~~cP~CrkVr~~L~e~gI~ye~~~v~~~~~~~~~e~~~inp~gkVPvLvd~n~G~~I~ES~aIi~Y 212 (274)
+++||+.++||+|++++.+|++++++|+++++..+.+ ..+++.++++..++|+++. +|..++++.+|.+.
T Consensus 1 ~v~ly~~~~Cp~C~~~~~~L~~~~i~~~~~di~~~~~-~~~~l~~~~~~~~~P~~~~--~~~~igg~~~~~~~ 70 (72)
T cd02066 1 KVVVFSKSTCPYCKRAKRLLESLGIEFEEIDILEDGE-LREELKELSGWPTVPQIFI--NGEFIGGYDDLKAL 70 (72)
T ss_pred CEEEEECCCCHHHHHHHHHHHHcCCcEEEEECCCCHH-HHHHHHHHhCCCCcCEEEE--CCEEEecHHHHHHh
Confidence 4789999999999999999999999999999865332 5678889999999999999 89999999998764
No 63
>KOG4420 consensus Uncharacterized conserved protein (Ganglioside-induced differentiation associated protein 1, GDAP1) [Function unknown]
Probab=99.17 E-value=3.6e-11 Score=110.06 Aligned_cols=82 Identities=17% Similarity=0.304 Sum_probs=75.6
Q ss_pred CCCCeEEEEcCCCccHHHHHHHHHHcCCCeEEEEc-CCCCCCChhHHHhhCCCCceeEEEEcCCCceeeCHHHHHHHHhh
Q 024010 137 PEKPIEIYEYESCPFCRKVREIVAVLDLDVLYYPC-PRNGPNFRPKVLQMGGKKQFPYMVDPNTGVSMYESDNIIKYLVG 215 (274)
Q Consensus 137 ~~~~l~LY~~~~cP~CrkVr~~L~e~gI~ye~~~v-~~~~~~~~~e~~~inp~gkVPvLvd~n~G~~I~ES~aIi~YL~~ 215 (274)
+...+.||+++.+-.++|||+++.|+||+|+.++| +..++|..++|.++||.+.||||++ +..+|.|+..||+|+++
T Consensus 23 ~~e~~vLyhhpysf~sQkVrlvi~EK~id~~~y~V~l~~geh~epwFmrlNp~gevPVl~~--g~~II~d~tqIIdYvEr 100 (325)
T KOG4420|consen 23 PRESLVLYHHPYSFSSQKVRLVIAEKGIDCEEYDVSLPQGEHKEPWFMRLNPGGEVPVLIH--GDNIISDYTQIIDYVER 100 (325)
T ss_pred chhcceeeecCcccccceeeeehhhcccccceeeccCccccccCchheecCCCCCCceEec--CCeecccHHHHHHHHHH
Confidence 34459999999999999999999999999999999 5778999999999999999999999 88899999999999999
Q ss_pred hcCCC
Q 024010 216 KYGDG 220 (274)
Q Consensus 216 ~y~~~ 220 (274)
+|-..
T Consensus 101 tf~ge 105 (325)
T KOG4420|consen 101 TFTGE 105 (325)
T ss_pred hhccc
Confidence 99543
No 64
>PHA03050 glutaredoxin; Provisional
Probab=99.10 E-value=2.8e-10 Score=91.79 Aligned_cols=71 Identities=17% Similarity=0.324 Sum_probs=62.3
Q ss_pred CCeEEEEcCCCccHHHHHHHHHHcCC---CeEEEEcCCC--CCCChhHHHhhCCCCceeEEEEcCCCceeeCHHHHHH
Q 024010 139 KPIEIYEYESCPFCRKVREIVAVLDL---DVLYYPCPRN--GPNFRPKVLQMGGKKQFPYMVDPNTGVSMYESDNIIK 211 (274)
Q Consensus 139 ~~l~LY~~~~cP~CrkVr~~L~e~gI---~ye~~~v~~~--~~~~~~e~~~inp~gkVPvLvd~n~G~~I~ES~aIi~ 211 (274)
.++++|+.++||||.+++.+|+++|+ +|+++++... +...+.++.++++..+||++++ +|..|++.+++.+
T Consensus 13 ~~V~vys~~~CPyC~~ak~~L~~~~i~~~~~~~i~i~~~~~~~~~~~~l~~~tG~~tVP~IfI--~g~~iGG~ddl~~ 88 (108)
T PHA03050 13 NKVTIFVKFTCPFCRNALDILNKFSFKRGAYEIVDIKEFKPENELRDYFEQITGGRTVPRIFF--GKTSIGGYSDLLE 88 (108)
T ss_pred CCEEEEECCCChHHHHHHHHHHHcCCCcCCcEEEECCCCCCCHHHHHHHHHHcCCCCcCEEEE--CCEEEeChHHHHH
Confidence 56999999999999999999999999 8999998642 2224678889999999999999 8999999999887
No 65
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=99.09 E-value=3.4e-10 Score=84.70 Aligned_cols=72 Identities=17% Similarity=0.412 Sum_probs=63.3
Q ss_pred eEEEEcCCCccHHHHHHHHHHcCCCeEEEEcCCCCCCChhHHHhhCCCCceeEEEEcCCCceeeCHHHHHHHHhh
Q 024010 141 IEIYEYESCPFCRKVREIVAVLDLDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMVDPNTGVSMYESDNIIKYLVG 215 (274)
Q Consensus 141 l~LY~~~~cP~CrkVr~~L~e~gI~ye~~~v~~~~~~~~~e~~~inp~gkVPvLvd~n~G~~I~ES~aIi~YL~~ 215 (274)
++||+.++||+|.+++.+|+++|++|+++++..+ +...+++.+.++..+||+++. +|..+++.+++.++..+
T Consensus 1 v~ly~~~~Cp~C~~a~~~L~~~~i~~~~~di~~~-~~~~~~~~~~~g~~~vP~i~i--~g~~igg~~~~~~~~~~ 72 (79)
T TIGR02181 1 VTIYTKPYCPYCTRAKALLSSKGVTFTEIRVDGD-PALRDEMMQRSGRRTVPQIFI--GDVHVGGCDDLYALDRE 72 (79)
T ss_pred CEEEecCCChhHHHHHHHHHHcCCCcEEEEecCC-HHHHHHHHHHhCCCCcCEEEE--CCEEEcChHHHHHHHHc
Confidence 5899999999999999999999999999998653 334677888889999999999 89999999999887654
No 66
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=99.08 E-value=5.1e-10 Score=80.46 Aligned_cols=71 Identities=18% Similarity=0.410 Sum_probs=60.0
Q ss_pred CeEEEEcCCCccHHHHHHHHHHcCCCeEEEEcCCCCCCChhHHHhhCCCCceeEEEEcCCCcee--eCHHHHHHHH
Q 024010 140 PIEIYEYESCPFCRKVREIVAVLDLDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMVDPNTGVSM--YESDNIIKYL 213 (274)
Q Consensus 140 ~l~LY~~~~cP~CrkVr~~L~e~gI~ye~~~v~~~~~~~~~e~~~inp~gkVPvLvd~n~G~~I--~ES~aIi~YL 213 (274)
+++||+.++||+|++++.+|+++|++|+.+++..+ +...+++.+.++..+||+|++ +|..+ ++..+|.+||
T Consensus 1 ~i~lf~~~~C~~C~~~~~~l~~~~i~~~~vdi~~~-~~~~~~~~~~~~~~~vP~~~~--~~~~~~g~~~~~i~~~i 73 (74)
T TIGR02196 1 KVKVYTTPWCPPCKKAKEYLTSKGIAFEEIDVEKD-SAAREEVLKVLGQRGVPVIVI--GHKIIVGFDPEKLDQLL 73 (74)
T ss_pred CEEEEcCCCChhHHHHHHHHHHCCCeEEEEeccCC-HHHHHHHHHHhCCCcccEEEE--CCEEEeeCCHHHHHHHh
Confidence 38999999999999999999999999999988543 233567888999999999998 67777 6778887776
No 67
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=99.06 E-value=5.7e-10 Score=88.37 Aligned_cols=75 Identities=16% Similarity=0.323 Sum_probs=62.7
Q ss_pred CCCeEEEEcCCCccHHHHHHHHHHcCCCeEEEEcCCCCCC--ChhHHHhhCCCCceeEEEEcCCCceeeCHHHHHHHHh
Q 024010 138 EKPIEIYEYESCPFCRKVREIVAVLDLDVLYYPCPRNGPN--FRPKVLQMGGKKQFPYMVDPNTGVSMYESDNIIKYLV 214 (274)
Q Consensus 138 ~~~l~LY~~~~cP~CrkVr~~L~e~gI~ye~~~v~~~~~~--~~~e~~~inp~gkVPvLvd~n~G~~I~ES~aIi~YL~ 214 (274)
..+++||+.++||||.+++.+|+.+|++|+++++...... ...++.+.++..+||++++ +|..|++.+++.+...
T Consensus 7 ~~~Vvvysk~~Cp~C~~ak~~L~~~~i~~~~vdid~~~~~~~~~~~l~~~tg~~tvP~Vfi--~g~~iGG~ddl~~l~~ 83 (99)
T TIGR02189 7 EKAVVIFSRSSCCMCHVVKRLLLTLGVNPAVHEIDKEPAGKDIENALSRLGCSPAVPAVFV--GGKLVGGLENVMALHI 83 (99)
T ss_pred cCCEEEEECCCCHHHHHHHHHHHHcCCCCEEEEcCCCccHHHHHHHHHHhcCCCCcCeEEE--CCEEEcCHHHHHHHHH
Confidence 3579999999999999999999999999999999643221 2345667789999999999 8999999999887543
No 68
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=99.03 E-value=1e-09 Score=86.56 Aligned_cols=74 Identities=18% Similarity=0.331 Sum_probs=63.9
Q ss_pred CCCeEEEEc-----CCCccHHHHHHHHHHcCCCeEEEEcCCCCCCChhHHHhhCCCCceeEEEEcCCCceeeCHHHHHHH
Q 024010 138 EKPIEIYEY-----ESCPFCRKVREIVAVLDLDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMVDPNTGVSMYESDNIIKY 212 (274)
Q Consensus 138 ~~~l~LY~~-----~~cP~CrkVr~~L~e~gI~ye~~~v~~~~~~~~~e~~~inp~gkVPvLvd~n~G~~I~ES~aIi~Y 212 (274)
..++.||.. ++||||.+++.+|+++|++|+++++..+ +....++.++++..+||++++ +|..|++.+++.+.
T Consensus 11 ~~~Vvvf~kg~~~~~~Cp~C~~ak~lL~~~~i~~~~~di~~~-~~~~~~l~~~tg~~tvP~vfi--~g~~iGG~ddl~~l 87 (97)
T TIGR00365 11 ENPVVLYMKGTPQFPQCGFSARAVQILKACGVPFAYVNVLED-PEIRQGIKEYSNWPTIPQLYV--KGEFVGGCDIIMEM 87 (97)
T ss_pred cCCEEEEEccCCCCCCCchHHHHHHHHHHcCCCEEEEECCCC-HHHHHHHHHHhCCCCCCEEEE--CCEEEeChHHHHHH
Confidence 357999977 8999999999999999999999998543 344677888999999999999 89999999999886
Q ss_pred Hh
Q 024010 213 LV 214 (274)
Q Consensus 213 L~ 214 (274)
..
T Consensus 88 ~~ 89 (97)
T TIGR00365 88 YQ 89 (97)
T ss_pred HH
Confidence 54
No 69
>cd03079 GST_N_Metaxin2 GST_N family, Metaxin subfamily, Metaxin 2; a metaxin 1 binding protein identified through a yeast two-hybrid system using metaxin 1 as the bait. Metaxin 2 shares sequence similarity with metaxin 1 but does not contain a C-terminal mitochondrial outer membrane signal-anchor domain. It associates with mitochondrial membranes through its interaction with metaxin 1, which is a component of the mitochondrial preprotein import complex of the outer membrane. The biological function of metaxin 2 is unknown. It is likely that it also plays a role in protein translocation into the mitochondria. However, this has not been experimentally validated. In a recent proteomics study, it has been shown that metaxin 2 is overexpressed in response to lipopolysaccharide-induced liver injury.
Probab=99.01 E-value=1.1e-09 Score=82.97 Aligned_cols=60 Identities=13% Similarity=0.176 Sum_probs=49.8
Q ss_pred CCCccHHHHHHHHHHcCCCeEEEEcCCCCCCChhHHHhhCCCCceeEEEEcCCCceeeCHHHHHHHHhhh
Q 024010 147 ESCPFCRKVREIVAVLDLDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMVDPNTGVSMYESDNIIKYLVGK 216 (274)
Q Consensus 147 ~~cP~CrkVr~~L~e~gI~ye~~~v~~~~~~~~~e~~~inp~gkVPvLvd~n~G~~I~ES~aIi~YL~~~ 216 (274)
+.+++|.|++++|++.|++|+.+.... ++ ..+|.|+||+|++ ||.+|.||.+|+.||+++
T Consensus 15 ~~~~~~~kv~~~L~elglpye~~~~~~-~~-------~~~P~GkVP~L~~--dg~vI~eS~aIl~yL~~~ 74 (74)
T cd03079 15 PDNASCLAVQTFLKMCNLPFNVRCRAN-AE-------FMSPSGKVPFIRV--GNQIVSEFGPIVQFVEAK 74 (74)
T ss_pred CCCCCHHHHHHHHHHcCCCcEEEecCC-cc-------ccCCCCcccEEEE--CCEEEeCHHHHHHHHhcC
Confidence 357899999999999999999885421 11 1556799999999 889999999999999864
No 70
>TIGR02200 GlrX_actino Glutaredoxin-like protein. This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.
Probab=99.01 E-value=2e-09 Score=78.91 Aligned_cols=73 Identities=14% Similarity=0.271 Sum_probs=59.2
Q ss_pred CeEEEEcCCCccHHHHHHHHHHcCCCeEEEEcCCCCCCChhHHHhhC-CCCceeEEEEcCCCceeeC--HHHHHHHHh
Q 024010 140 PIEIYEYESCPFCRKVREIVAVLDLDVLYYPCPRNGPNFRPKVLQMG-GKKQFPYMVDPNTGVSMYE--SDNIIKYLV 214 (274)
Q Consensus 140 ~l~LY~~~~cP~CrkVr~~L~e~gI~ye~~~v~~~~~~~~~e~~~in-p~gkVPvLvd~n~G~~I~E--S~aIi~YL~ 214 (274)
+++||+..+||+|++++.+|+++|++|+.+++..+ +....++.+++ +..+||+++.. +|..+.+ +.+|+++|.
T Consensus 1 ~v~ly~~~~C~~C~~~~~~L~~~~~~~~~idi~~~-~~~~~~~~~~~~~~~~vP~i~~~-~g~~l~~~~~~~~~~~l~ 76 (77)
T TIGR02200 1 TITVYGTTWCGYCAQLMRTLDKLGAAYEWVDIEED-EGAADRVVSVNNGNMTVPTVKFA-DGSFLTNPSAAQVKAKLQ 76 (77)
T ss_pred CEEEEECCCChhHHHHHHHHHHcCCceEEEeCcCC-HhHHHHHHHHhCCCceeCEEEEC-CCeEecCCCHHHHHHHhh
Confidence 47999999999999999999999999999998543 33456777887 89999999753 6666655 577787775
No 71
>PRK10329 glutaredoxin-like protein; Provisional
Probab=99.00 E-value=1.3e-09 Score=83.47 Aligned_cols=71 Identities=20% Similarity=0.364 Sum_probs=53.6
Q ss_pred CCeEEEEcCCCccHHHHHHHHHHcCCCeEEEEcCCCCCCChhHHHhhCCCCceeEEEEcCCCcee--eCHHHHHHHH
Q 024010 139 KPIEIYEYESCPFCRKVREIVAVLDLDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMVDPNTGVSM--YESDNIIKYL 213 (274)
Q Consensus 139 ~~l~LY~~~~cP~CrkVr~~L~e~gI~ye~~~v~~~~~~~~~e~~~inp~gkVPvLvd~n~G~~I--~ES~aIi~YL 213 (274)
|+++||+.++||+|.+++.+|+++||+|+++++..+ +....++ +.+|..+||++++ ++..+ ++-+.|-+..
T Consensus 1 ~~v~lYt~~~Cp~C~~ak~~L~~~gI~~~~idi~~~-~~~~~~~-~~~g~~~vPvv~i--~~~~~~Gf~~~~l~~~~ 73 (81)
T PRK10329 1 MRITIYTRNDCVQCHATKRAMESRGFDFEMINVDRV-PEAAETL-RAQGFRQLPVVIA--GDLSWSGFRPDMINRLH 73 (81)
T ss_pred CEEEEEeCCCCHhHHHHHHHHHHCCCceEEEECCCC-HHHHHHH-HHcCCCCcCEEEE--CCEEEecCCHHHHHHHH
Confidence 469999999999999999999999999999998643 2223334 4468899999998 55544 3445555444
No 72
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=98.99 E-value=1.8e-09 Score=83.69 Aligned_cols=74 Identities=20% Similarity=0.316 Sum_probs=64.2
Q ss_pred CCCeEEEEc-----CCCccHHHHHHHHHHcCCCeEEEEcCCCCCCChhHHHhhCCCCceeEEEEcCCCceeeCHHHHHHH
Q 024010 138 EKPIEIYEY-----ESCPFCRKVREIVAVLDLDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMVDPNTGVSMYESDNIIKY 212 (274)
Q Consensus 138 ~~~l~LY~~-----~~cP~CrkVr~~L~e~gI~ye~~~v~~~~~~~~~e~~~inp~gkVPvLvd~n~G~~I~ES~aIi~Y 212 (274)
..++++|.. ++||||.+++.+|+.+|++|+++++..+ ...+.++.+.++..+||++++ +|..|++.+++.++
T Consensus 7 ~~~vvvf~k~~~~~~~Cp~C~~ak~~L~~~~i~y~~idv~~~-~~~~~~l~~~~g~~tvP~vfi--~g~~iGG~~~l~~l 83 (90)
T cd03028 7 ENPVVLFMKGTPEEPRCGFSRKVVQILNQLGVDFGTFDILED-EEVRQGLKEYSNWPTFPQLYV--NGELVGGCDIVKEM 83 (90)
T ss_pred cCCEEEEEcCCCCCCCCcHHHHHHHHHHHcCCCeEEEEcCCC-HHHHHHHHHHhCCCCCCEEEE--CCEEEeCHHHHHHH
Confidence 357999987 6999999999999999999999998653 345678889999999999999 89999999999886
Q ss_pred Hh
Q 024010 213 LV 214 (274)
Q Consensus 213 L~ 214 (274)
..
T Consensus 84 ~~ 85 (90)
T cd03028 84 HE 85 (90)
T ss_pred HH
Confidence 54
No 73
>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes
Probab=98.99 E-value=1.6e-09 Score=80.74 Aligned_cols=74 Identities=12% Similarity=0.389 Sum_probs=63.2
Q ss_pred CeEEEEcCCCccHHHHHHHHHHcCCCeEEEEcCCCCC--CChhHHHhhCCCCceeEEEEcCCCceeeCHHHHHHHHhh
Q 024010 140 PIEIYEYESCPFCRKVREIVAVLDLDVLYYPCPRNGP--NFRPKVLQMGGKKQFPYMVDPNTGVSMYESDNIIKYLVG 215 (274)
Q Consensus 140 ~l~LY~~~~cP~CrkVr~~L~e~gI~ye~~~v~~~~~--~~~~e~~~inp~gkVPvLvd~n~G~~I~ES~aIi~YL~~ 215 (274)
++++|+.++||+|.+++.+|.+.+++|+.+++..... +...++.++++..++|+++. +|..+++.++|+++..+
T Consensus 1 ~v~~y~~~~Cp~C~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~~~P~v~~--~g~~igg~~~~~~~~~~ 76 (82)
T cd03419 1 PVVVFSKSYCPYCKRAKSLLKELGVKPAVVELDQHEDGSEIQDYLQELTGQRTVPNVFI--GGKFIGGCDDLMALHKS 76 (82)
T ss_pred CEEEEEcCCCHHHHHHHHHHHHcCCCcEEEEEeCCCChHHHHHHHHHHhCCCCCCeEEE--CCEEEcCHHHHHHHHHc
Confidence 4799999999999999999999999999998854322 22456778899999999999 89999999999998765
No 74
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=98.92 E-value=1.2e-09 Score=77.91 Aligned_cols=60 Identities=17% Similarity=0.423 Sum_probs=52.2
Q ss_pred eEEEEcCCCccHHHHHHHHHHcCCCeEEEEcCCCCCCChhHHHhhCCCCceeEEEEcCCCcee
Q 024010 141 IEIYEYESCPFCRKVREIVAVLDLDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMVDPNTGVSM 203 (274)
Q Consensus 141 l~LY~~~~cP~CrkVr~~L~e~gI~ye~~~v~~~~~~~~~e~~~inp~gkVPvLvd~n~G~~I 203 (274)
++||+.++||+|.+++.+|+++|++|+++++.... ..++++.+.++..++|+++. ||..|
T Consensus 1 V~vy~~~~C~~C~~~~~~L~~~~i~y~~~dv~~~~-~~~~~l~~~~g~~~~P~v~i--~g~~I 60 (60)
T PF00462_consen 1 VVVYTKPGCPYCKKAKEFLDEKGIPYEEVDVDEDE-EAREELKELSGVRTVPQVFI--DGKFI 60 (60)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTTBEEEEEEGGGSH-HHHHHHHHHHSSSSSSEEEE--TTEEE
T ss_pred cEEEEcCCCcCHHHHHHHHHHcCCeeeEcccccch-hHHHHHHHHcCCCccCEEEE--CCEEC
Confidence 68999999999999999999999999999996432 35778888889999999999 77654
No 75
>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou
Probab=98.92 E-value=3.7e-09 Score=75.89 Aligned_cols=63 Identities=13% Similarity=0.366 Sum_probs=53.5
Q ss_pred CeEEEEcCCCccHHHHHHHHHHcCCCeEEEEcCCCCCCChhHHHhhCCCCceeEEEEcCCCceeeC
Q 024010 140 PIEIYEYESCPFCRKVREIVAVLDLDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMVDPNTGVSMYE 205 (274)
Q Consensus 140 ~l~LY~~~~cP~CrkVr~~L~e~gI~ye~~~v~~~~~~~~~e~~~inp~gkVPvLvd~n~G~~I~E 205 (274)
.+++|+..+||+|++++.+|.++|++|..+++..+ ....+++.++++.++||+|++ +|..|.+
T Consensus 1 ~v~l~~~~~c~~c~~~~~~l~~~~i~~~~~~i~~~-~~~~~~~~~~~~~~~vP~i~~--~~~~i~g 63 (73)
T cd02976 1 EVTVYTKPDCPYCKATKRFLDERGIPFEEVDVDED-PEALEELKKLNGYRSVPVVVI--GDEHLSG 63 (73)
T ss_pred CEEEEeCCCChhHHHHHHHHHHCCCCeEEEeCCCC-HHHHHHHHHHcCCcccCEEEE--CCEEEec
Confidence 47999999999999999999999999999998543 334577889999999999998 6666654
No 76
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=98.88 E-value=6.6e-09 Score=77.49 Aligned_cols=73 Identities=15% Similarity=0.389 Sum_probs=60.8
Q ss_pred eEEEEcCCCccHHHHHHHHHHcCCC--eEEEEcCCCC--CCChhHHHhhCCCCceeEEEEcCCCceeeCHHHHHHHHhh
Q 024010 141 IEIYEYESCPFCRKVREIVAVLDLD--VLYYPCPRNG--PNFRPKVLQMGGKKQFPYMVDPNTGVSMYESDNIIKYLVG 215 (274)
Q Consensus 141 l~LY~~~~cP~CrkVr~~L~e~gI~--ye~~~v~~~~--~~~~~e~~~inp~gkVPvLvd~n~G~~I~ES~aIi~YL~~ 215 (274)
+++|+.++||+|.+++.+|.+.+++ |+.+++.... ......+.+.++..+||+++. +|..++++++++++..+
T Consensus 1 V~~f~~~~Cp~C~~~~~~L~~~~i~~~~~~~~v~~~~~~~~~~~~l~~~~g~~~vP~v~i--~g~~igg~~~~~~~~~~ 77 (84)
T TIGR02180 1 VVVFSKSYCPYCKKAKEILAKLNVKPAYEVVELDQLSNGSEIQDYLEEITGQRTVPNIFI--NGKFIGGCSDLLALYKS 77 (84)
T ss_pred CEEEECCCChhHHHHHHHHHHcCCCCCCEEEEeeCCCChHHHHHHHHHHhCCCCCCeEEE--CCEEEcCHHHHHHHHHc
Confidence 5799999999999999999999999 9888885422 112344677788899999999 89999999999998764
No 77
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=98.88 E-value=4.4e-09 Score=77.82 Aligned_cols=54 Identities=17% Similarity=0.270 Sum_probs=44.9
Q ss_pred eEEEEcCCCccHHHHHHHHHHcCCCeEEEEcCCCCCCChhHHHhhCCCCceeEEEE
Q 024010 141 IEIYEYESCPFCRKVREIVAVLDLDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMVD 196 (274)
Q Consensus 141 l~LY~~~~cP~CrkVr~~L~e~gI~ye~~~v~~~~~~~~~e~~~inp~gkVPvLvd 196 (274)
++||+.++||+|++++.+|+++|++|+++++..+. ....++.. .|..+||++++
T Consensus 1 v~ly~~~~Cp~C~~ak~~L~~~~i~~~~~di~~~~-~~~~~~~~-~g~~~vP~v~~ 54 (72)
T TIGR02194 1 ITVYSKNNCVQCKMTKKALEEHGIAFEEINIDEQP-EAIDYVKA-QGFRQVPVIVA 54 (72)
T ss_pred CEEEeCCCCHHHHHHHHHHHHCCCceEEEECCCCH-HHHHHHHH-cCCcccCEEEE
Confidence 58999999999999999999999999999986432 22444544 58889999988
No 78
>PRK10824 glutaredoxin-4; Provisional
Probab=98.84 E-value=1e-08 Score=83.83 Aligned_cols=74 Identities=22% Similarity=0.345 Sum_probs=64.1
Q ss_pred CCCeEEEEc-----CCCccHHHHHHHHHHcCCCeEEEEcCCCCCCChhHHHhhCCCCceeEEEEcCCCceeeCHHHHHHH
Q 024010 138 EKPIEIYEY-----ESCPFCRKVREIVAVLDLDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMVDPNTGVSMYESDNIIKY 212 (274)
Q Consensus 138 ~~~l~LY~~-----~~cP~CrkVr~~L~e~gI~ye~~~v~~~~~~~~~e~~~inp~gkVPvLvd~n~G~~I~ES~aIi~Y 212 (274)
..++.+|.. ++||||++++.+|+..|++|.++++..+ +..+.++.+.++..+||++++ +|..|++++++.+.
T Consensus 14 ~~~Vvvf~Kg~~~~p~Cpyc~~ak~lL~~~~i~~~~idi~~d-~~~~~~l~~~sg~~TVPQIFI--~G~~IGG~ddl~~l 90 (115)
T PRK10824 14 ENPILLYMKGSPKLPSCGFSAQAVQALSACGERFAYVDILQN-PDIRAELPKYANWPTFPQLWV--DGELVGGCDIVIEM 90 (115)
T ss_pred cCCEEEEECCCCCCCCCchHHHHHHHHHHcCCCceEEEecCC-HHHHHHHHHHhCCCCCCeEEE--CCEEEcChHHHHHH
Confidence 356899988 5999999999999999999999998643 335677889999999999999 99999999999886
Q ss_pred Hh
Q 024010 213 LV 214 (274)
Q Consensus 213 L~ 214 (274)
..
T Consensus 91 ~~ 92 (115)
T PRK10824 91 YQ 92 (115)
T ss_pred HH
Confidence 54
No 79
>KOG3029 consensus Glutathione S-transferase-related protein [General function prediction only]
Probab=98.75 E-value=2.2e-08 Score=92.98 Aligned_cols=74 Identities=27% Similarity=0.515 Sum_probs=60.9
Q ss_pred CCCeEEEEcCCCccHHHHHHHHHHcCCCeEEEEcCCCCCCChhHHHhhCCCCceeEEEEcCCCceeeCHHHHHHHHhhhc
Q 024010 138 EKPIEIYEYESCPFCRKVREIVAVLDLDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMVDPNTGVSMYESDNIIKYLVGKY 217 (274)
Q Consensus 138 ~~~l~LY~~~~cP~CrkVr~~L~e~gI~ye~~~v~~~~~~~~~e~~~inp~gkVPvLvd~n~G~~I~ES~aIi~YL~~~y 217 (274)
.-.++||+|+.||||-|||.+|...||+|++++|. +-.+.+ .+.+-..+||+|.. .|..|.||..||.-|+...
T Consensus 88 ~L~l~LyQyetCPFCcKVrAFLDyhgisY~VVEVn---pV~r~e-Ik~SsykKVPil~~--~Geqm~dSsvIIs~laTyL 161 (370)
T KOG3029|consen 88 PLDLVLYQYETCPFCCKVRAFLDYHGISYAVVEVN---PVLRQE-IKWSSYKKVPILLI--RGEQMVDSSVIISLLATYL 161 (370)
T ss_pred CceEEEEeeccCchHHHHHHHHhhcCCceEEEEec---chhhhh-ccccccccccEEEe--ccceechhHHHHHHHHHHh
Confidence 35799999999999999999999999999999983 222333 44567889999988 6778999999999886544
No 80
>KOG1695 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.74 E-value=2.8e-08 Score=88.85 Aligned_cols=83 Identities=14% Similarity=0.172 Sum_probs=70.7
Q ss_pred CCCeEEEEcCCCccHHHHHHHHHHcCCCeEEEEcCCCCCCChhHHHhhCCCCceeEEEEcCCCceeeCHHHHHHHHhhhc
Q 024010 138 EKPIEIYEYESCPFCRKVREIVAVLDLDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMVDPNTGVSMYESDNIIKYLVGKY 217 (274)
Q Consensus 138 ~~~l~LY~~~~cP~CrkVr~~L~e~gI~ye~~~v~~~~~~~~~e~~~inp~gkVPvLvd~n~G~~I~ES~aIi~YL~~~y 217 (274)
|+.++|++|.....|.-+|+++...|++||++.+...+. -.+++...|.+++|+|.. ||..|.+|.||++||+++|
T Consensus 1 m~~ykL~Yf~~RG~ae~iR~lf~~a~v~fEd~r~~~~~~--w~~~K~~~pfgqlP~l~v--Dg~~i~QS~AI~RyLArk~ 76 (206)
T KOG1695|consen 1 MPPYKLTYFNIRGLAEPIRLLFAYAGVSFEDKRITMEDA--WEELKDKMPFGQLPVLEV--DGKKLVQSRAILRYLARKF 76 (206)
T ss_pred CCceEEEecCcchhHHHHHHHHHhcCCCcceeeeccccc--hhhhcccCCCCCCCEEeE--CCEeeccHHHHHHHHHHHh
Confidence 567899999999999999999999999999999865431 234566689999999998 8999999999999999999
Q ss_pred CCC-CCCc
Q 024010 218 GDG-SVPF 224 (274)
Q Consensus 218 ~~~-~~P~ 224 (274)
|-. ..+.
T Consensus 77 gl~Gkt~~ 84 (206)
T KOG1695|consen 77 GLAGKTEE 84 (206)
T ss_pred CcCCCCHH
Confidence 843 4443
No 81
>cd03078 GST_N_Metaxin1_like GST_N family, Metaxin subfamily, Metaxin 1-like proteins; composed of metaxins 1 and 3, and similar proteins including Tom37 from fungi. Mammalian metaxin (or metaxin 1) and the fungal protein Tom37 are components of preprotein import complexes of the mitochondrial outer membrane. Metaxin extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. Like the murine gene, the human metaxin gene is located downstream to the glucocerebrosidase (GBA) pseudogene and is convergently transcribed. Inherited deficiency of GBA results in Gaucher disease, which presents many diverse clinical phenotypes. Alterations in the metaxin gene, in addition to GBA mutations, may be associated with Gaucher disease. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken and mammals.
Probab=98.61 E-value=2.1e-07 Score=69.85 Aligned_cols=58 Identities=19% Similarity=0.334 Sum_probs=49.4
Q ss_pred CCccHHHHHHHHHHcCCCeEEEEcCCCCCCChhHHHhhCCCCceeEEEEcCCCceeeCHHHHHHHHhhh
Q 024010 148 SCPFCRKVREIVAVLDLDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMVDPNTGVSMYESDNIIKYLVGK 216 (274)
Q Consensus 148 ~cP~CrkVr~~L~e~gI~ye~~~v~~~~~~~~~e~~~inp~gkVPvLvd~n~G~~I~ES~aIi~YL~~~ 216 (274)
.||+|.|+..+|+..|++|+.+.... + ..+|+|++|+|++ +|..+.||..|++||.++
T Consensus 15 ~sp~clk~~~~Lr~~~~~~~v~~~~n--~-------~~sp~gkLP~l~~--~~~~i~d~~~Ii~~L~~~ 72 (73)
T cd03078 15 VDPECLAVLAYLKFAGAPLKVVPSNN--P-------WRSPTGKLPALLT--SGTKISGPEKIIEYLRKQ 72 (73)
T ss_pred CCHHHHHHHHHHHcCCCCEEEEecCC--C-------CCCCCCccCEEEE--CCEEecChHHHHHHHHHc
Confidence 57999999999999999998875321 1 3458999999999 899999999999999865
No 82
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=98.55 E-value=2.6e-07 Score=78.62 Aligned_cols=72 Identities=14% Similarity=0.277 Sum_probs=61.5
Q ss_pred CeEEEEcC------CCccHHHHHHHHHHcCCCeEEEEcCCCCCCChhHHHhhCCC----CceeEEEEcCCCceeeCHHHH
Q 024010 140 PIEIYEYE------SCPFCRKVREIVAVLDLDVLYYPCPRNGPNFRPKVLQMGGK----KQFPYMVDPNTGVSMYESDNI 209 (274)
Q Consensus 140 ~l~LY~~~------~cP~CrkVr~~L~e~gI~ye~~~v~~~~~~~~~e~~~inp~----gkVPvLvd~n~G~~I~ES~aI 209 (274)
.++||+.. .||+|.+|+.+|+.++|+|++++|..+ ....+++.++.+. .+||++++ +|..|++.+++
T Consensus 1 ~VvlYttsl~giR~t~~~C~~ak~iL~~~~V~~~e~DVs~~-~~~~~EL~~~~g~~~~~~tvPqVFI--~G~~IGG~del 77 (147)
T cd03031 1 RVVLYTTSLRGVRKTFEDCNNVRAILESFRVKFDERDVSMD-SGFREELRELLGAELKAVSLPRVFV--DGRYLGGAEEV 77 (147)
T ss_pred CEEEEEcCCcCCCCcChhHHHHHHHHHHCCCcEEEEECCCC-HHHHHHHHHHhCCCCCCCCCCEEEE--CCEEEecHHHH
Confidence 47899998 899999999999999999999999653 3357778887665 79999999 89999999999
Q ss_pred HHHHh
Q 024010 210 IKYLV 214 (274)
Q Consensus 210 i~YL~ 214 (274)
.+.-+
T Consensus 78 ~~L~e 82 (147)
T cd03031 78 LRLNE 82 (147)
T ss_pred HHHHH
Confidence 88543
No 83
>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional
Probab=98.51 E-value=2.9e-07 Score=89.88 Aligned_cols=70 Identities=17% Similarity=0.323 Sum_probs=57.1
Q ss_pred CCCeEEEEcCCCccHHHHHHHHHHcCCCeEEEEcCCCCCCChhHHH-h--------hCCCCceeEEEEcCCCceeeCHHH
Q 024010 138 EKPIEIYEYESCPFCRKVREIVAVLDLDVLYYPCPRNGPNFRPKVL-Q--------MGGKKQFPYMVDPNTGVSMYESDN 208 (274)
Q Consensus 138 ~~~l~LY~~~~cP~CrkVr~~L~e~gI~ye~~~v~~~~~~~~~e~~-~--------inp~gkVPvLvd~n~G~~I~ES~a 208 (274)
|+.+++|+.++||+|.+++.+|+.+||+|++++|.++ +. ..++. + .++..+||+++. +|.+|++-++
T Consensus 1 m~~V~vys~~~Cp~C~~aK~~L~~~gi~~~~idi~~~-~~-~~~~~~~~~~~~~~~~~g~~tvP~ifi--~~~~igGf~~ 76 (410)
T PRK12759 1 MVEVRIYTKTNCPFCDLAKSWFGANDIPFTQISLDDD-VK-RAEFYAEVNKNILLVEEHIRTVPQIFV--GDVHIGGYDN 76 (410)
T ss_pred CCcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEECCCC-hh-HHHHHHHHhhccccccCCCCccCeEEE--CCEEEeCchH
Confidence 4679999999999999999999999999999999643 22 22222 2 257889999999 8889999888
Q ss_pred HHH
Q 024010 209 IIK 211 (274)
Q Consensus 209 Ii~ 211 (274)
+..
T Consensus 77 l~~ 79 (410)
T PRK12759 77 LMA 79 (410)
T ss_pred HHH
Confidence 876
No 84
>PTZ00062 glutaredoxin; Provisional
Probab=98.50 E-value=4.2e-07 Score=81.21 Aligned_cols=74 Identities=15% Similarity=0.227 Sum_probs=63.7
Q ss_pred CCCeEEEEc-----CCCccHHHHHHHHHHcCCCeEEEEcCCCCCCChhHHHhhCCCCceeEEEEcCCCceeeCHHHHHHH
Q 024010 138 EKPIEIYEY-----ESCPFCRKVREIVAVLDLDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMVDPNTGVSMYESDNIIKY 212 (274)
Q Consensus 138 ~~~l~LY~~-----~~cP~CrkVr~~L~e~gI~ye~~~v~~~~~~~~~e~~~inp~gkVPvLvd~n~G~~I~ES~aIi~Y 212 (274)
..++.||.. +.||||++++.+|+++|++|+++++..+ +..+..+.+.++..+||++++ +|..|++.+.+.+.
T Consensus 112 ~~~Vvvf~Kg~~~~p~C~~C~~~k~~L~~~~i~y~~~DI~~d-~~~~~~l~~~sg~~TvPqVfI--~G~~IGG~d~l~~l 188 (204)
T PTZ00062 112 NHKILLFMKGSKTFPFCRFSNAVVNMLNSSGVKYETYNIFED-PDLREELKVYSNWPTYPQLYV--NGELIGGHDIIKEL 188 (204)
T ss_pred cCCEEEEEccCCCCCCChhHHHHHHHHHHcCCCEEEEEcCCC-HHHHHHHHHHhCCCCCCeEEE--CCEEEcChHHHHHH
Confidence 357999988 6999999999999999999999998643 445677888999999999999 89999999888875
Q ss_pred Hh
Q 024010 213 LV 214 (274)
Q Consensus 213 L~ 214 (274)
..
T Consensus 189 ~~ 190 (204)
T PTZ00062 189 YE 190 (204)
T ss_pred HH
Confidence 43
No 85
>KOG1422 consensus Intracellular Cl- channel CLIC, contains GST domain [Inorganic ion transport and metabolism]
Probab=98.49 E-value=4.8e-07 Score=80.82 Aligned_cols=74 Identities=16% Similarity=0.227 Sum_probs=65.3
Q ss_pred CCCccHHHHHHHHHHcCCCeEEEEcCCCCCCChhHHHhhCCCCceeEEEEcCCCceeeCHHHHHHHHhhhcCCCCCCc
Q 024010 147 ESCPFCRKVREIVAVLDLDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMVDPNTGVSMYESDNIIKYLVGKYGDGSVPF 224 (274)
Q Consensus 147 ~~cP~CrkVr~~L~e~gI~ye~~~v~~~~~~~~~e~~~inp~gkVPvLvd~n~G~~I~ES~aIi~YL~~~y~~~~~P~ 224 (274)
-.||||+++.+.|.++|++|.+..|+.. ...++|+++.|.+++|+|.. ++.++.||+.|.++|+++|+.+.+|.
T Consensus 19 Gdcpf~qr~~m~L~~k~~~f~vttVd~~--~kp~~f~~~sp~~~~P~l~~--d~~~~tDs~~Ie~~Lee~l~~p~~~~ 92 (221)
T KOG1422|consen 19 GDCPFCQRLFMTLELKGVPFKVTTVDLS--RKPEWFLDISPGGKPPVLKF--DEKWVTDSDKIEEFLEEKLPPPKLPT 92 (221)
T ss_pred CCChhHHHHHHHHHHcCCCceEEEeecC--CCcHHHHhhCCCCCCCeEEe--CCceeccHHHHHHHHHHhcCCCCCcc
Confidence 3699999999999999999999888532 24678999999999999999 88999999999999999998876554
No 86
>KOG1752 consensus Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=98.45 E-value=7.8e-07 Score=71.62 Aligned_cols=75 Identities=16% Similarity=0.430 Sum_probs=62.9
Q ss_pred CCCeEEEEcCCCccHHHHHHHHHHcCCCeEEEEcCCCC--CCChhHHHhhCCCCceeEEEEcCCCceeeCHHHHHHHHh
Q 024010 138 EKPIEIYEYESCPFCRKVREIVAVLDLDVLYYPCPRNG--PNFRPKVLQMGGKKQFPYMVDPNTGVSMYESDNIIKYLV 214 (274)
Q Consensus 138 ~~~l~LY~~~~cP~CrkVr~~L~e~gI~ye~~~v~~~~--~~~~~e~~~inp~gkVPvLvd~n~G~~I~ES~aIi~YL~ 214 (274)
..++.+|...+||||.+++.+|...++.+..++++... ......+.++++..+||.+++ +|..|++.++|+++-.
T Consensus 13 ~~~VVifSKs~C~~c~~~k~ll~~~~v~~~vvELD~~~~g~eiq~~l~~~tg~~tvP~vFI--~Gk~iGG~~dl~~lh~ 89 (104)
T KOG1752|consen 13 ENPVVIFSKSSCPYCHRAKELLSDLGVNPKVVELDEDEDGSEIQKALKKLTGQRTVPNVFI--GGKFIGGASDLMALHK 89 (104)
T ss_pred cCCEEEEECCcCchHHHHHHHHHhCCCCCEEEEccCCCCcHHHHHHHHHhcCCCCCCEEEE--CCEEEcCHHHHHHHHH
Confidence 45799999999999999999999999999999985432 223345567889999999999 9999999999988654
No 87
>PLN02907 glutamate-tRNA ligase
Probab=98.23 E-value=6e-06 Score=85.97 Aligned_cols=71 Identities=10% Similarity=0.031 Sum_probs=58.5
Q ss_pred CCeEEEEcCCCccHHHHHHHHHHcCCCeEEEEcCCCCCCChhHHHhhCCCCceeEEEEcCCCceeeCHHHHHHHHhhhcC
Q 024010 139 KPIEIYEYESCPFCRKVREIVAVLDLDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMVDPNTGVSMYESDNIIKYLVGKYG 218 (274)
Q Consensus 139 ~~l~LY~~~~cP~CrkVr~~L~e~gI~ye~~~v~~~~~~~~~e~~~inp~gkVPvLvd~n~G~~I~ES~aIi~YL~~~y~ 218 (274)
|.++||..+.++ +.++.++|+++|++|+.+. .+|.++||+|+++ +|.+|+||.||++||++.|+
T Consensus 1 ~~~kLy~~~~S~-~~~v~~~L~~lgv~~e~~~--------------~~p~GkVPvLv~d-dG~~L~ES~AIl~YLa~~~p 64 (722)
T PLN02907 1 MEAKLSFPPDSP-PLAVIAAAKVAGVPLTIDP--------------SLKSGSAPTLLFS-SGEKLTGTNVLLRYIARSAS 64 (722)
T ss_pred CeEEEEECCCCC-hHHHHHHHHHcCCCcEEee--------------cCCCCCCcEEEEC-CCCEEECHHHHHHHHHHhCC
Confidence 348899988765 5578999999999999864 1579999999853 78899999999999999996
Q ss_pred CC-CCCcc
Q 024010 219 DG-SVPFM 225 (274)
Q Consensus 219 ~~-~~P~~ 225 (274)
.. ++|.+
T Consensus 65 ~~~L~p~d 72 (722)
T PLN02907 65 LPGFYGQD 72 (722)
T ss_pred CcCCCCCC
Confidence 54 56654
No 88
>KOG4244 consensus Failed axon connections (fax) protein/glutathione S-transferase-like protein [Signal transduction mechanisms]
Probab=98.04 E-value=1.7e-05 Score=73.29 Aligned_cols=75 Identities=19% Similarity=0.373 Sum_probs=63.6
Q ss_pred CCeEEEEcC-------CCccHHHHHHHHHHcCCCeEEEEcCCCCCCChhHHHhhCCCCceeEEEEcCCCceeeCHHHHHH
Q 024010 139 KPIEIYEYE-------SCPFCRKVREIVAVLDLDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMVDPNTGVSMYESDNIIK 211 (274)
Q Consensus 139 ~~l~LY~~~-------~cP~CrkVr~~L~e~gI~ye~~~v~~~~~~~~~e~~~inp~gkVPvLvd~n~G~~I~ES~aIi~ 211 (274)
..+-||+|+ .||||.|+-.+|+..+|+||.+++. +...+.+|++|.++. +|..|.||+-|+.
T Consensus 44 D~VYLyQF~R~~~~PnLSPfClKvEt~lR~~~IpYE~~~~~---------~~~rSr~G~lPFIEL--NGe~iaDS~~I~~ 112 (281)
T KOG4244|consen 44 DTVYLYQFPRTKTCPNLSPFCLKVETFLRAYDIPYEIVDCS---------LKRRSRNGTLPFIEL--NGEHIADSDLIED 112 (281)
T ss_pred CeEEEEeccccCCCCCCChHHHHHHHHHHHhCCCceecccc---------ceeeccCCCcceEEe--CCeeccccHHHHH
Confidence 457899995 4789999999999999999998752 335578899999999 9999999999999
Q ss_pred HHhhhcCCCC-CCc
Q 024010 212 YLVGKYGDGS-VPF 224 (274)
Q Consensus 212 YL~~~y~~~~-~P~ 224 (274)
+|.++|+-.+ .+.
T Consensus 113 ~L~~hf~~~~~L~~ 126 (281)
T KOG4244|consen 113 RLRKHFKIPDDLSA 126 (281)
T ss_pred HHHHHcCCCCCCCH
Confidence 9999998654 443
No 89
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=97.99 E-value=2.3e-05 Score=56.36 Aligned_cols=58 Identities=17% Similarity=0.395 Sum_probs=45.7
Q ss_pred CeEEEEcCCCccHHHHHHHHHHc-----CCCeEEEEcCCCCCCChhHHHhhCCCCceeEEEEcCCCceee
Q 024010 140 PIEIYEYESCPFCRKVREIVAVL-----DLDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMVDPNTGVSMY 204 (274)
Q Consensus 140 ~l~LY~~~~cP~CrkVr~~L~e~-----gI~ye~~~v~~~~~~~~~e~~~inp~gkVPvLvd~n~G~~I~ 204 (274)
++++|+.++||+|.+++.+|++. +++|..+++.. .+++.+..+-..+|+++. +|..++
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~i~~~~id~~~-----~~~l~~~~~i~~vPti~i--~~~~~~ 64 (67)
T cd02973 2 NIEVFVSPTCPYCPDAVQAANRIAALNPNISAEMIDAAE-----FPDLADEYGVMSVPAIVI--NGKVEF 64 (67)
T ss_pred EEEEEECCCCCCcHHHHHHHHHHHHhCCceEEEEEEccc-----CHhHHHHcCCcccCEEEE--CCEEEE
Confidence 47899999999999999999875 57777776532 235677778889999998 777655
No 90
>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.
Probab=97.96 E-value=8.6e-06 Score=65.60 Aligned_cols=47 Identities=21% Similarity=0.403 Sum_probs=38.1
Q ss_pred eEEEEcCCCccHHHHHHHHHHcCCCeEEEEcCCCCCCChhHHHhhCCC
Q 024010 141 IEIYEYESCPFCRKVREIVAVLDLDVLYYPCPRNGPNFRPKVLQMGGK 188 (274)
Q Consensus 141 l~LY~~~~cP~CrkVr~~L~e~gI~ye~~~v~~~~~~~~~e~~~inp~ 188 (274)
++||+.++||+|++++.+|+++|++|+++++..+.. ...++.++...
T Consensus 1 i~iY~~~~C~~c~ka~~~L~~~~i~~~~idi~~~~~-~~~el~~~~~~ 47 (111)
T cd03036 1 LKFYEYPKCSTCRKAKKWLDEHGVDYTAIDIVEEPP-SKEELKKWLEK 47 (111)
T ss_pred CEEEECCCCHHHHHHHHHHHHcCCceEEecccCCcc-cHHHHHHHHHH
Confidence 589999999999999999999999999999865443 35566654443
No 91
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=97.80 E-value=4.1e-05 Score=60.55 Aligned_cols=47 Identities=17% Similarity=0.304 Sum_probs=38.4
Q ss_pred eEEEEcCCCccHHHHHHHHHHcCCCeEEEEcCCCCCCChhHHHhhCCC
Q 024010 141 IEIYEYESCPFCRKVREIVAVLDLDVLYYPCPRNGPNFRPKVLQMGGK 188 (274)
Q Consensus 141 l~LY~~~~cP~CrkVr~~L~e~gI~ye~~~v~~~~~~~~~e~~~inp~ 188 (274)
++||+.++||+|++++.+|+++|++|+++++..+.. ...++.++...
T Consensus 1 i~iY~~~~C~~c~ka~~~L~~~~i~~~~idi~~~~~-~~~~l~~~~~~ 47 (105)
T cd02977 1 ITIYGNPNCSTSRKALAWLEEHGIEYEFIDYLKEPP-TKEELKELLAK 47 (105)
T ss_pred CEEEECCCCHHHHHHHHHHHHcCCCcEEEeeccCCC-CHHHHHHHHHh
Confidence 589999999999999999999999999999865433 35566665443
No 92
>cd03030 GRX_SH3BGR Glutaredoxin (GRX) family, SH3BGR (SH3 domain binding glutamic acid-rich protein) subfamily; a recently-identified subfamily composed of SH3BGR and similar proteins possessing significant sequence similarity to GRX, but without a redox active CXXC motif. The SH3BGR gene was cloned in an effort to identify genes mapping to chromosome 21, which could be involved in the pathogenesis of congenital heart disease affecting Down syndrome newborns. Several human SH3BGR-like (SH3BGRL) genes have been identified since, mapping to different locations in the chromosome. Of these, SH3BGRL3 was identified as a tumor necrosis factor (TNF) alpha inhibitory protein and was also named TIP-B1. Upregulation of expression of SH3BGRL3 is associated with differentiation. It has been suggested that it functions as a regulator of differentiation-related signal transduction pathways.
Probab=97.76 E-value=0.00014 Score=57.23 Aligned_cols=70 Identities=11% Similarity=0.018 Sum_probs=56.0
Q ss_pred eEEEEcCCCc------cHHHHHHHHHHcCCCeEEEEcCCCCCCChhHHHhhCC----CCceeEEEEcCCCceeeCHHHHH
Q 024010 141 IEIYEYESCP------FCRKVREIVAVLDLDVLYYPCPRNGPNFRPKVLQMGG----KKQFPYMVDPNTGVSMYESDNII 210 (274)
Q Consensus 141 l~LY~~~~cP------~CrkVr~~L~e~gI~ye~~~v~~~~~~~~~e~~~inp----~gkVPvLvd~n~G~~I~ES~aIi 210 (274)
|+||....+. .|++|+.+|..+||+|++++|..+ +..+.++.+..+ ..+||+++. +|..|++.+++.
T Consensus 2 i~vY~ts~~g~~~~k~~~~~v~~lL~~k~I~f~eiDI~~d-~~~r~em~~~~~~~~g~~tvPQIFi--~~~~iGg~ddl~ 78 (92)
T cd03030 2 IKVYIASSSGSTEIKKRQQEVLGFLEAKKIEFEEVDISMN-EENRQWMRENVPNENGKPLPPQIFN--GDEYCGDYEAFF 78 (92)
T ss_pred EEEEEecccccHHHHHHHHHHHHHHHHCCCceEEEecCCC-HHHHHHHHHhcCCCCCCCCCCEEEE--CCEEeeCHHHHH
Confidence 5677664332 789999999999999999999653 445778877754 479999999 899999999888
Q ss_pred HHH
Q 024010 211 KYL 213 (274)
Q Consensus 211 ~YL 213 (274)
+.-
T Consensus 79 ~l~ 81 (92)
T cd03030 79 EAK 81 (92)
T ss_pred HHH
Confidence 743
No 93
>PRK01655 spxA transcriptional regulator Spx; Reviewed
Probab=97.66 E-value=7.7e-05 Score=61.99 Aligned_cols=43 Identities=16% Similarity=0.230 Sum_probs=35.9
Q ss_pred eEEEEcCCCccHHHHHHHHHHcCCCeEEEEcCCCCCCChhHHHh
Q 024010 141 IEIYEYESCPFCRKVREIVAVLDLDVLYYPCPRNGPNFRPKVLQ 184 (274)
Q Consensus 141 l~LY~~~~cP~CrkVr~~L~e~gI~ye~~~v~~~~~~~~~e~~~ 184 (274)
++||+.++|++|++++.+|+++||+|+++++..+.. ...++.+
T Consensus 2 i~iY~~~~C~~C~ka~~~L~~~gi~~~~idi~~~~~-~~~eL~~ 44 (131)
T PRK01655 2 VTLFTSPSCTSCRKAKAWLEEHDIPFTERNIFSSPL-TIDEIKQ 44 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHHcCCCcEEeeccCChh-hHHHHHH
Confidence 899999999999999999999999999999855433 2445544
No 94
>COG0678 AHP1 Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=97.62 E-value=1.3e-05 Score=68.63 Aligned_cols=38 Identities=21% Similarity=0.257 Sum_probs=35.1
Q ss_pred hhhhcccchhhccCCcceeccCCCCCCccccccccCccccccccCCC
Q 024010 89 ALFFRFGTGVFVSGYSASFVSKDEIPPDQYTLEIAGFKVKETSKLGP 135 (274)
Q Consensus 89 ~~~~r~g~G~~~~g~~~~lv~~~~~~~~~yal~~~g~r~~r~s~l~~ 135 (274)
-.+|.||+|+|+.+||| ++|++++ ++|.|+|||+|+++
T Consensus 100 I~fi~Dg~geFTk~~Gm-~~d~~~~--------g~G~RS~RYsmvV~ 137 (165)
T COG0678 100 IKFIPDGNGEFTKAMGM-LVDKSDL--------GFGVRSWRYSMVVE 137 (165)
T ss_pred EEEecCCCchhhhhcCc-eeecccC--------CcceeeeeEEEEEe
Confidence 35689999999999999 8999999 99999999999965
No 95
>cd03032 ArsC_Spx Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes. It inhibits transcription by binding to the C-terminal domain of the alpha subunit of RNAP, disrupting complex formation between RNAP and certain transcriptional activator proteins like ResD and ComA. In response to oxidative stress, Spx can also activate transcription, making it a general regulator that exerts both positive and negative control over transcription initiation. Spx has been shown to exert redox-sensitive transcriptional control over genes like trxA (TRX) and trxB (TRX reductase), genes that function in thiol homeostasis. This redox-sensitive activity is dependent on the presence of a CXXC motif, present in some members of the Spx subfamily, that acts as a thiol/disulfide switch. Spx has also been shown to repress genes in a sulfate-dependent manner independent of the presence of the CXXC motif.
Probab=97.60 E-value=0.00012 Score=59.10 Aligned_cols=43 Identities=16% Similarity=0.305 Sum_probs=35.8
Q ss_pred eEEEEcCCCccHHHHHHHHHHcCCCeEEEEcCCCCCCChhHHHh
Q 024010 141 IEIYEYESCPFCRKVREIVAVLDLDVLYYPCPRNGPNFRPKVLQ 184 (274)
Q Consensus 141 l~LY~~~~cP~CrkVr~~L~e~gI~ye~~~v~~~~~~~~~e~~~ 184 (274)
++||+.+.|++|++++.+|+++|++|+++++..+..+ ..++.+
T Consensus 2 i~iY~~~~C~~c~ka~~~L~~~gi~~~~idi~~~~~~-~~el~~ 44 (115)
T cd03032 2 IKLYTSPSCSSCRKAKQWLEEHQIPFEERNLFKQPLT-KEELKE 44 (115)
T ss_pred EEEEeCCCCHHHHHHHHHHHHCCCceEEEecCCCcch-HHHHHH
Confidence 8999999999999999999999999999998554332 444444
No 96
>TIGR01617 arsC_related transcriptional regulator, Spx/MgsR family. This model represents a portion of the proteins within the larger set covered by Pfam model pfam03960. That larger family includes a glutaredoxin-dependent arsenate reductase (TIGR00014). Characterized members of this family include Spx and MgsR from Bacillus subtili. Spx is a global regulator for response to thiol-specific oxidative stress. It interacts with RNA polymerase. MgsR (modulator of the general stress response, also called YqgZ) provides a second level of regulation for more than a third of the proteins in the B. subtilis general stress regulon controlled by Sigma-B.
Probab=97.58 E-value=0.00011 Score=59.59 Aligned_cols=43 Identities=23% Similarity=0.591 Sum_probs=35.3
Q ss_pred eEEEEcCCCccHHHHHHHHHHcCCCeEEEEcCCCCCCChhHHHh
Q 024010 141 IEIYEYESCPFCRKVREIVAVLDLDVLYYPCPRNGPNFRPKVLQ 184 (274)
Q Consensus 141 l~LY~~~~cP~CrkVr~~L~e~gI~ye~~~v~~~~~~~~~e~~~ 184 (274)
++||+.+.||+|++++.+|+++|++|+++++.....+ ..++.+
T Consensus 1 i~iY~~~~C~~c~ka~~~L~~~~i~~~~idi~~~~~~-~~el~~ 43 (117)
T TIGR01617 1 IKVYGSPNCTTCKKARRWLEANGIEYQFIDIGEDGPT-REELLD 43 (117)
T ss_pred CEEEeCCCCHHHHHHHHHHHHcCCceEEEecCCChhh-HHHHHH
Confidence 5899999999999999999999999999998544332 444543
No 97
>PRK13344 spxA transcriptional regulator Spx; Reviewed
Probab=97.49 E-value=0.00023 Score=59.33 Aligned_cols=43 Identities=21% Similarity=0.386 Sum_probs=36.1
Q ss_pred eEEEEcCCCccHHHHHHHHHHcCCCeEEEEcCCCCCCChhHHHh
Q 024010 141 IEIYEYESCPFCRKVREIVAVLDLDVLYYPCPRNGPNFRPKVLQ 184 (274)
Q Consensus 141 l~LY~~~~cP~CrkVr~~L~e~gI~ye~~~v~~~~~~~~~e~~~ 184 (274)
++||+.+.|+.|++++.+|+++|++|+++++..+... .+++.+
T Consensus 2 i~iY~~~~C~~crkA~~~L~~~~i~~~~~d~~~~~~s-~~eL~~ 44 (132)
T PRK13344 2 IKIYTISSCTSCKKAKTWLNAHQLSYKEQNLGKEPLT-KEEILA 44 (132)
T ss_pred EEEEeCCCCHHHHHHHHHHHHcCCCeEEEECCCCCCC-HHHHHH
Confidence 8999999999999999999999999999998654443 444443
No 98
>COG0278 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.47 E-value=0.00044 Score=55.45 Aligned_cols=73 Identities=18% Similarity=0.358 Sum_probs=62.1
Q ss_pred CCCeEEEEc-----CCCccHHHHHHHHHHcC-CCeEEEEcCCCCCCChhHHHhhCCCCceeEEEEcCCCceeeCHHHHHH
Q 024010 138 EKPIEIYEY-----ESCPFCRKVREIVAVLD-LDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMVDPNTGVSMYESDNIIK 211 (274)
Q Consensus 138 ~~~l~LY~~-----~~cP~CrkVr~~L~e~g-I~ye~~~v~~~~~~~~~e~~~inp~gkVPvLvd~n~G~~I~ES~aIi~ 211 (274)
..++.||-+ |.|.|+.++--+|...| ++|..++|..+ +..++.+++.+..-++|+|.. +|..+++|+.|.+
T Consensus 14 ~n~VvLFMKGtp~~P~CGFS~~~vqiL~~~g~v~~~~vnVL~d-~eiR~~lk~~s~WPT~PQLyi--~GEfvGG~DIv~E 90 (105)
T COG0278 14 ENPVVLFMKGTPEFPQCGFSAQAVQILSACGVVDFAYVDVLQD-PEIRQGLKEYSNWPTFPQLYV--NGEFVGGCDIVRE 90 (105)
T ss_pred cCceEEEecCCCCCCCCCccHHHHHHHHHcCCcceeEEeeccC-HHHHhccHhhcCCCCCceeeE--CCEEeccHHHHHH
Confidence 356888855 78999999999999999 89999998764 456888999999999999999 8999999887766
Q ss_pred HH
Q 024010 212 YL 213 (274)
Q Consensus 212 YL 213 (274)
-.
T Consensus 91 m~ 92 (105)
T COG0278 91 MY 92 (105)
T ss_pred HH
Confidence 44
No 99
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=97.47 E-value=0.00024 Score=56.92 Aligned_cols=43 Identities=14% Similarity=0.352 Sum_probs=36.0
Q ss_pred eEEEEcCCCccHHHHHHHHHHcCCCeEEEEcCCCCCCChhHHHh
Q 024010 141 IEIYEYESCPFCRKVREIVAVLDLDVLYYPCPRNGPNFRPKVLQ 184 (274)
Q Consensus 141 l~LY~~~~cP~CrkVr~~L~e~gI~ye~~~v~~~~~~~~~e~~~ 184 (274)
|++|+.+.|+.|++++.+|+++|++|+++++.....+ ..++.+
T Consensus 1 i~iy~~~~C~~crka~~~L~~~~i~~~~~di~~~p~s-~~eL~~ 43 (105)
T cd03035 1 ITLYGIKNCDTVKKARKWLEARGVAYTFHDYRKDGLD-AATLER 43 (105)
T ss_pred CEEEeCCCCHHHHHHHHHHHHcCCCeEEEecccCCCC-HHHHHH
Confidence 5899999999999999999999999999998654443 445554
No 100
>PRK12559 transcriptional regulator Spx; Provisional
Probab=97.44 E-value=0.00027 Score=58.89 Aligned_cols=43 Identities=19% Similarity=0.282 Sum_probs=36.3
Q ss_pred eEEEEcCCCccHHHHHHHHHHcCCCeEEEEcCCCCCCChhHHHh
Q 024010 141 IEIYEYESCPFCRKVREIVAVLDLDVLYYPCPRNGPNFRPKVLQ 184 (274)
Q Consensus 141 l~LY~~~~cP~CrkVr~~L~e~gI~ye~~~v~~~~~~~~~e~~~ 184 (274)
+++|+.+.|+.|++++.+|+++|++|+++++..+... .+++.+
T Consensus 2 i~iY~~~~C~~crkA~~~L~~~gi~~~~~di~~~~~s-~~el~~ 44 (131)
T PRK12559 2 VVLYTTASCASCRKAKAWLEENQIDYTEKNIVSNSMT-VDELKS 44 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHHcCCCeEEEEeeCCcCC-HHHHHH
Confidence 8999999999999999999999999999998654443 444544
No 101
>cd03033 ArsC_15kD Arsenate Reductase (ArsC) family, 15kD protein subfamily; composed of proteins of unknown function with similarity to thioredoxin-fold arsenic reductases, ArsC. It is encoded by an ORF present in a gene cluster associated with nitrogen fixation that also encodes dinitrogenase reductase ADP-ribosyltransferase (DRAT) and dinitrogenase reductase activating glycohydrolase (DRAG). ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via glutaredoxin, through a single catalytic cysteine.
Probab=97.43 E-value=0.0003 Score=57.19 Aligned_cols=45 Identities=11% Similarity=0.100 Sum_probs=37.4
Q ss_pred CeEEEEcCCCccHHHHHHHHHHcCCCeEEEEcCCCCCCChhHHHhh
Q 024010 140 PIEIYEYESCPFCRKVREIVAVLDLDVLYYPCPRNGPNFRPKVLQM 185 (274)
Q Consensus 140 ~l~LY~~~~cP~CrkVr~~L~e~gI~ye~~~v~~~~~~~~~e~~~i 185 (274)
.++||+.+.|+.|++++.+|+++|++|+++++...... ..++..+
T Consensus 1 ~i~iy~~p~C~~crkA~~~L~~~gi~~~~~d~~~~p~s-~~eL~~~ 45 (113)
T cd03033 1 DIIFYEKPGCANNARQKALLEAAGHEVEVRDLLTEPWT-AETLRPF 45 (113)
T ss_pred CEEEEECCCCHHHHHHHHHHHHcCCCcEEeehhcCCCC-HHHHHHH
Confidence 37899999999999999999999999999998655443 5555543
No 102
>PRK10026 arsenate reductase; Provisional
Probab=97.29 E-value=0.00052 Score=58.14 Aligned_cols=46 Identities=17% Similarity=0.282 Sum_probs=38.0
Q ss_pred CCCeEEEEcCCCccHHHHHHHHHHcCCCeEEEEcCCCCCCChhHHHh
Q 024010 138 EKPIEIYEYESCPFCRKVREIVAVLDLDVLYYPCPRNGPNFRPKVLQ 184 (274)
Q Consensus 138 ~~~l~LY~~~~cP~CrkVr~~L~e~gI~ye~~~v~~~~~~~~~e~~~ 184 (274)
|..|+||+.+.|.-|+|++.+|+++|++|+++++.....+ .+++..
T Consensus 1 m~~i~iY~~p~Cst~RKA~~wL~~~gi~~~~~d~~~~ppt-~~eL~~ 46 (141)
T PRK10026 1 MSNITIYHNPACGTSRNTLEMIRNSGTEPTIIHYLETPPT-RDELVK 46 (141)
T ss_pred CCEEEEEeCCCCHHHHHHHHHHHHCCCCcEEEeeeCCCcC-HHHHHH
Confidence 3579999999999999999999999999999998654443 444443
No 103
>COG4545 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.26 E-value=0.00087 Score=51.21 Aligned_cols=64 Identities=19% Similarity=0.337 Sum_probs=48.5
Q ss_pred CeEEEEcCCCccHHHHHHHHHHcCCCeEEEEcCCCCCC---------ChhHHHh--hCCCCceeEEEEcCCCceee
Q 024010 140 PIEIYEYESCPFCRKVREIVAVLDLDVLYYPCPRNGPN---------FRPKVLQ--MGGKKQFPYMVDPNTGVSMY 204 (274)
Q Consensus 140 ~l~LY~~~~cP~CrkVr~~L~e~gI~ye~~~v~~~~~~---------~~~e~~~--inp~gkVPvLvd~n~G~~I~ 204 (274)
+.+||....||-|.-+.+.|+.++++|++++|.....+ .+++|-+ .++.-.+|+|..+ ||.++.
T Consensus 3 kp~lfgsn~Cpdca~a~eyl~rl~v~yd~VeIt~Sm~NlKrFl~lRDs~~~Fd~vk~~gyiGIPall~~-d~~vVl 77 (85)
T COG4545 3 KPKLFGSNLCPDCAPAVEYLERLNVDYDFVEITESMANLKRFLHLRDSRPEFDEVKSNGYIGIPALLTD-DGKVVL 77 (85)
T ss_pred CceeeccccCcchHHHHHHHHHcCCCceeeehhhhhhhHHHHHhhhccchhHHhhhhcCcccceEEEeC-CCcEEE
Confidence 44999999999999999999999999999998432222 2455654 4677789999765 554443
No 104
>COG1393 ArsC Arsenate reductase and related proteins, glutaredoxin family [Inorganic ion transport and metabolism]
Probab=97.19 E-value=0.00081 Score=55.16 Aligned_cols=46 Identities=20% Similarity=0.411 Sum_probs=38.7
Q ss_pred CCeEEEEcCCCccHHHHHHHHHHcCCCeEEEEcCCCCCCChhHHHhh
Q 024010 139 KPIEIYEYESCPFCRKVREIVAVLDLDVLYYPCPRNGPNFRPKVLQM 185 (274)
Q Consensus 139 ~~l~LY~~~~cP~CrkVr~~L~e~gI~ye~~~v~~~~~~~~~e~~~i 185 (274)
|.++||+.+.|.-|++++.+|+++||+|+++++...+.. ++++.++
T Consensus 1 ~~itiy~~p~C~t~rka~~~L~~~gi~~~~~~y~~~~~s-~~eL~~~ 46 (117)
T COG1393 1 MMITIYGNPNCSTCRKALAWLEEHGIEYTFIDYLKTPPS-REELKKI 46 (117)
T ss_pred CeEEEEeCCCChHHHHHHHHHHHcCCCcEEEEeecCCCC-HHHHHHH
Confidence 469999999999999999999999999999998665554 5555553
No 105
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=97.10 E-value=0.0033 Score=47.01 Aligned_cols=56 Identities=20% Similarity=0.346 Sum_probs=41.9
Q ss_pred CCeEEEEcCCCccHHHH----HHHHHHcCCCeEEEEcCCCCCCChhHHHhhCCCCceeEEEEcCCCcee
Q 024010 139 KPIEIYEYESCPFCRKV----REIVAVLDLDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMVDPNTGVSM 203 (274)
Q Consensus 139 ~~l~LY~~~~cP~CrkV----r~~L~e~gI~ye~~~v~~~~~~~~~e~~~inp~gkVPvLvd~n~G~~I 203 (274)
|.+.+|. ++||+|..+ ..++++.|++++++.+.. .++ ....+-..+|+++. +|..+
T Consensus 1 m~i~~~a-~~C~~C~~~~~~~~~~~~e~~~~~~~~~v~~-----~~~-a~~~~v~~vPti~i--~G~~~ 60 (76)
T TIGR00412 1 MKIQIYG-TGCANCQMTEKNVKKAVEELGIDAEFEKVTD-----MNE-ILEAGVTATPGVAV--DGELV 60 (76)
T ss_pred CEEEEEC-CCCcCHHHHHHHHHHHHHHcCCCeEEEEeCC-----HHH-HHHcCCCcCCEEEE--CCEEE
Confidence 4578887 999999998 668888999999887741 223 33457779999998 66544
No 106
>TIGR01616 nitro_assoc nitrogenase-associated protein. This model describes a small family of uncharacterized proteins found so far in alpha and gamma proteobacteria and in Nostoc sp. PCC 7120, a cyanobacterium. The gene for this protein is associated with nitrogenase genes. This family shows sequence similarity to TIGR00014, a glutaredoxin-dependent arsenate reductase that converts arsentate to arsenite for disposal. This family is one of several included in Pfam model pfam03960.
Probab=97.03 E-value=0.0014 Score=54.36 Aligned_cols=44 Identities=14% Similarity=0.104 Sum_probs=36.7
Q ss_pred CeEEEEcCCCccHHHHHHHHHHcCCCeEEEEcCCCCCCChhHHHh
Q 024010 140 PIEIYEYESCPFCRKVREIVAVLDLDVLYYPCPRNGPNFRPKVLQ 184 (274)
Q Consensus 140 ~l~LY~~~~cP~CrkVr~~L~e~gI~ye~~~v~~~~~~~~~e~~~ 184 (274)
.++||+.+.|.-|+|++.+|+++|++|+++++.....+ .+++..
T Consensus 2 ~i~iY~~p~Cst~RKA~~~L~~~gi~~~~~d~~~~p~t-~~eL~~ 45 (126)
T TIGR01616 2 TIIFYEKPGCANNARQKAALKASGHDVEVQDILKEPWH-ADTLRP 45 (126)
T ss_pred eEEEEeCCCCHHHHHHHHHHHHCCCCcEEEeccCCCcC-HHHHHH
Confidence 48999999999999999999999999999998655443 444444
No 107
>PRK10853 putative reductase; Provisional
Probab=96.96 E-value=0.0015 Score=53.46 Aligned_cols=44 Identities=14% Similarity=0.313 Sum_probs=36.7
Q ss_pred eEEEEcCCCccHHHHHHHHHHcCCCeEEEEcCCCCCCChhHHHhh
Q 024010 141 IEIYEYESCPFCRKVREIVAVLDLDVLYYPCPRNGPNFRPKVLQM 185 (274)
Q Consensus 141 l~LY~~~~cP~CrkVr~~L~e~gI~ye~~~v~~~~~~~~~e~~~i 185 (274)
++||+.+.|.-|+|++.+|+++|++|+++++.....+ .+++.++
T Consensus 2 i~iy~~~~C~t~rkA~~~L~~~~i~~~~~d~~k~p~s-~~eL~~~ 45 (118)
T PRK10853 2 VTLYGIKNCDTIKKARRWLEAQGIDYRFHDYRVDGLD-SELLQGF 45 (118)
T ss_pred EEEEcCCCCHHHHHHHHHHHHcCCCcEEeehccCCcC-HHHHHHH
Confidence 8999999999999999999999999999998654443 4455543
No 108
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=96.86 E-value=0.011 Score=43.35 Aligned_cols=54 Identities=20% Similarity=0.300 Sum_probs=37.7
Q ss_pred CeEEEEcCCCccHHHHHHHHHH----cCCCeEEEEcCCCCCCChhHHHhhCCCCceeEEEE
Q 024010 140 PIEIYEYESCPFCRKVREIVAV----LDLDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMVD 196 (274)
Q Consensus 140 ~l~LY~~~~cP~CrkVr~~L~e----~gI~ye~~~v~~~~~~~~~e~~~inp~gkVPvLvd 196 (274)
.++||+.++||+|.++.-.|++ .+..+....++.+ ..++..+..+-..+|+++.
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~vd~~---~~~~~~~~~~v~~vPt~~~ 59 (82)
T TIGR00411 2 KIELFTSPTCPYCPAAKRVVEEVAKEMGDAVEVEYINVM---ENPQKAMEYGIMAVPAIVI 59 (82)
T ss_pred EEEEEECCCCcchHHHHHHHHHHHHHhcCceEEEEEeCc---cCHHHHHHcCCccCCEEEE
Confidence 4789999999999999988764 3433444444321 1335556677788999988
No 109
>cd03034 ArsC_ArsC Arsenate Reductase (ArsC) family, ArsC subfamily; arsenic reductases similar to that encoded by arsC on the R733 plasmid of Escherichia coli. E. coli ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], the first step in the detoxification of arsenic, using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX). ArsC contains a single catalytic cysteine, within a thioredoxin fold, that forms a covalent thiolate-As(V) intermediate, which is reduced by GRX through a mixed GSH-arsenate intermediate. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases.
Probab=96.78 E-value=0.0028 Score=51.05 Aligned_cols=43 Identities=14% Similarity=0.276 Sum_probs=35.5
Q ss_pred eEEEEcCCCccHHHHHHHHHHcCCCeEEEEcCCCCCCChhHHHh
Q 024010 141 IEIYEYESCPFCRKVREIVAVLDLDVLYYPCPRNGPNFRPKVLQ 184 (274)
Q Consensus 141 l~LY~~~~cP~CrkVr~~L~e~gI~ye~~~v~~~~~~~~~e~~~ 184 (274)
|+||+.+.|.-|+|++.+|+++|++|+++++.....+ ..++.+
T Consensus 1 i~iy~~~~C~t~rkA~~~L~~~~i~~~~~di~~~~~t-~~el~~ 43 (112)
T cd03034 1 ITIYHNPRCSKSRNALALLEEAGIEPEIVEYLKTPPT-AAELRE 43 (112)
T ss_pred CEEEECCCCHHHHHHHHHHHHCCCCeEEEecccCCcC-HHHHHH
Confidence 5899999999999999999999999999998654443 444443
No 110
>TIGR00014 arsC arsenate reductase (glutaredoxin). composed of two polypeptides, the products of the arsA and arsB genes. The pump alone produces resistance to arsenite and antimonite. This protein, ArsC, catalyzes the reduction of arsenate to arsenite, and thus extends resistance to include arsenate.
Probab=96.77 E-value=0.0029 Score=51.22 Aligned_cols=43 Identities=14% Similarity=0.282 Sum_probs=35.8
Q ss_pred eEEEEcCCCccHHHHHHHHHHcCCCeEEEEcCCCCCCChhHHHh
Q 024010 141 IEIYEYESCPFCRKVREIVAVLDLDVLYYPCPRNGPNFRPKVLQ 184 (274)
Q Consensus 141 l~LY~~~~cP~CrkVr~~L~e~gI~ye~~~v~~~~~~~~~e~~~ 184 (274)
++||+.+.|+-|+|++..|+++|++|+++++.....+ ..++..
T Consensus 1 i~iy~~~~C~t~rkA~~~L~~~~i~~~~~di~~~p~t-~~el~~ 43 (114)
T TIGR00014 1 VTIYHNPRCSKSRNTLALLEDKGIEPEVVKYLKNPPT-KSELEA 43 (114)
T ss_pred CEEEECCCCHHHHHHHHHHHHCCCCeEEEeccCCCcC-HHHHHH
Confidence 5899999999999999999999999999998655443 444444
No 111
>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.
Probab=96.77 E-value=0.0086 Score=45.32 Aligned_cols=51 Identities=16% Similarity=0.423 Sum_probs=37.8
Q ss_pred CeEEEEcCCCccHHHHHHHHHHcC----CCeEEEEcCCCCCCChhHHHhhCCCCceeEEEE
Q 024010 140 PIEIYEYESCPFCRKVREIVAVLD----LDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMVD 196 (274)
Q Consensus 140 ~l~LY~~~~cP~CrkVr~~L~e~g----I~ye~~~v~~~~~~~~~e~~~inp~gkVPvLvd 196 (274)
+++||+.++|+-|..++..|.... +.++.++|.. .+++.+..+. .||||..
T Consensus 1 ~l~l~~k~~C~LC~~a~~~L~~~~~~~~~~l~~vDI~~-----d~~l~~~Y~~-~IPVl~~ 55 (81)
T PF05768_consen 1 TLTLYTKPGCHLCDEAKEILEEVAAEFPFELEEVDIDE-----DPELFEKYGY-RIPVLHI 55 (81)
T ss_dssp -EEEEE-SSSHHHHHHHHHHHHCCTTSTCEEEEEETTT-----THHHHHHSCT-STSEEEE
T ss_pred CEEEEcCCCCChHHHHHHHHHHHHhhcCceEEEEECCC-----CHHHHHHhcC-CCCEEEE
Confidence 489999999999999999999643 4566666642 3356666664 8999987
No 112
>PF10568 Tom37: Outer mitochondrial membrane transport complex protein; InterPro: IPR019564 Tom37 is one of the outer membrane proteins that make up the TOM complex for guiding cytosolic mitochondrial beta-barrel proteins from the cytosol across the outer mitochondrial membrane into the intramembrane space. In conjunction with Tom70, it guides peptides without an mitochondrial targeting sequence (MTS) into Tom40, the protein that forms the passage through the outer membrane []. It has homology with metaxin, also part of the outer mitochondrial membrane beta-barrel protein transport complex []. This entry represents outer mitochondrial membrane transport complex proteins Tom37 and metaxin.; GO: 0006626 protein targeting to mitochondrion, 0005741 mitochondrial outer membrane
Probab=96.61 E-value=0.0095 Score=44.76 Aligned_cols=57 Identities=21% Similarity=0.325 Sum_probs=47.4
Q ss_pred CCccHHHHHHHHHHcCCC---eEEEEcCCCCCCChhHHHhhCCCCceeEEEEcCCCceeeCHHHHHHHHh
Q 024010 148 SCPFCRKVREIVAVLDLD---VLYYPCPRNGPNFRPKVLQMGGKKQFPYMVDPNTGVSMYESDNIIKYLV 214 (274)
Q Consensus 148 ~cP~CrkVr~~L~e~gI~---ye~~~v~~~~~~~~~e~~~inp~gkVPvLvd~n~G~~I~ES~aIi~YL~ 214 (274)
.+|-|.++..+|+..+.+ |+.+.... + .++|.+++|+|++ +++.++.+-.+|++||.
T Consensus 13 id~ecLa~~~yl~~~~~~~~~~~vv~s~n--~-------~~Sptg~LP~L~~-~~~~~vsg~~~Iv~yL~ 72 (72)
T PF10568_consen 13 IDPECLAVIAYLKFAGAPEQQFKVVPSNN--P-------WLSPTGELPALID-SGGTWVSGFRNIVEYLR 72 (72)
T ss_pred cCHHHHHHHHHHHhCCCCCceEEEEEcCC--C-------CcCCCCCCCEEEE-CCCcEEECHHHHHHhhC
Confidence 478999999999999999 77776422 2 2579999999998 37789999999999983
No 113
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=96.57 E-value=0.012 Score=43.88 Aligned_cols=58 Identities=17% Similarity=0.323 Sum_probs=40.8
Q ss_pred CCeEEEEcCCCccHHHHHH----HHHHcCCCeEEEEcCCCCCCChhHHHhhCCCCceeEEEEcCCCceeeC
Q 024010 139 KPIEIYEYESCPFCRKVRE----IVAVLDLDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMVDPNTGVSMYE 205 (274)
Q Consensus 139 ~~l~LY~~~~cP~CrkVr~----~L~e~gI~ye~~~v~~~~~~~~~e~~~inp~gkVPvLvd~n~G~~I~E 205 (274)
|++++ ..++||+|.++.. ++.+.|+.++.+++ . ..+++ ...+-..||.|+. ||.+.+.
T Consensus 1 m~I~v-~~~~C~~C~~~~~~~~~~~~~~~i~~ei~~~-~----~~~~~-~~ygv~~vPalvI--ng~~~~~ 62 (76)
T PF13192_consen 1 MKIKV-FSPGCPYCPELVQLLKEAAEELGIEVEIIDI-E----DFEEI-EKYGVMSVPALVI--NGKVVFV 62 (76)
T ss_dssp EEEEE-ECSSCTTHHHHHHHHHHHHHHTTEEEEEEET-T----THHHH-HHTT-SSSSEEEE--TTEEEEE
T ss_pred CEEEE-eCCCCCCcHHHHHHHHHHHHhcCCeEEEEEc-c----CHHHH-HHcCCCCCCEEEE--CCEEEEE
Confidence 45778 5677999996665 55668888887775 1 24455 7788889999999 7765443
No 114
>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold. Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.
Probab=96.48 E-value=0.0077 Score=39.44 Aligned_cols=54 Identities=20% Similarity=0.337 Sum_probs=39.5
Q ss_pred eEEEEcCCCccHHHHHHHHH-----HcCCCeEEEEcCCCCCCChhHHHhhCCCCceeEEEE
Q 024010 141 IEIYEYESCPFCRKVREIVA-----VLDLDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMVD 196 (274)
Q Consensus 141 l~LY~~~~cP~CrkVr~~L~-----e~gI~ye~~~v~~~~~~~~~e~~~inp~gkVPvLvd 196 (274)
+.+|...+|++|++++..+. ..++.+..+++..... ........+..++|.++.
T Consensus 1 l~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~P~~~~ 59 (69)
T cd01659 1 LVLFYAPWCPFCQALRPVLAELALLNKGVKFEAVDVDEDPA--LEKELKRYGVGGVPTLVV 59 (69)
T ss_pred CEEEECCCChhHHhhhhHHHHHHhhCCCcEEEEEEcCCChH--HhhHHHhCCCccccEEEE
Confidence 46788899999999999999 5677777777643221 222235678889999975
No 115
>KOG0911 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.41 E-value=0.0091 Score=54.19 Aligned_cols=74 Identities=15% Similarity=0.279 Sum_probs=62.6
Q ss_pred CCCeEEEEc-----CCCccHHHHHHHHHHcCCCeEEEEcCCCCCCChhHHHhhCCCCceeEEEEcCCCceeeCHHHHHHH
Q 024010 138 EKPIEIYEY-----ESCPFCRKVREIVAVLDLDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMVDPNTGVSMYESDNIIKY 212 (274)
Q Consensus 138 ~~~l~LY~~-----~~cP~CrkVr~~L~e~gI~ye~~~v~~~~~~~~~e~~~inp~gkVPvLvd~n~G~~I~ES~aIi~Y 212 (274)
..++.||-. +.|.|++++.-.|.+.|++|...+|..+ +..+.-+++.+..-|+|+|.. +|..+++.+-|.+-
T Consensus 138 a~~v~lFmKG~p~~P~CGFS~~~v~iL~~~nV~~~~fdIL~D-eelRqglK~fSdWPTfPQlyI--~GEFiGGlDIl~~m 214 (227)
T KOG0911|consen 138 AKPVMLFMKGTPEEPKCGFSRQLVGILQSHNVNYTIFDVLTD-EELRQGLKEFSDWPTFPQLYV--KGEFIGGLDILKEM 214 (227)
T ss_pred cCeEEEEecCCCCcccccccHHHHHHHHHcCCCeeEEeccCC-HHHHHHhhhhcCCCCccceeE--CCEeccCcHHHHHH
Confidence 456888865 7899999999999999999999999764 446788889999999999999 89989988777665
Q ss_pred Hh
Q 024010 213 LV 214 (274)
Q Consensus 213 L~ 214 (274)
+.
T Consensus 215 ~~ 216 (227)
T KOG0911|consen 215 HE 216 (227)
T ss_pred hh
Confidence 54
No 116
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=96.35 E-value=0.012 Score=45.60 Aligned_cols=59 Identities=15% Similarity=0.185 Sum_probs=44.1
Q ss_pred CCeEEEEcCCCccHHHHHHHHHHc-----CCCeEEEEcCCCCCCChhHHHhhCCCCceeEEEEcCCCceee
Q 024010 139 KPIEIYEYESCPFCRKVREIVAVL-----DLDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMVDPNTGVSMY 204 (274)
Q Consensus 139 ~~l~LY~~~~cP~CrkVr~~L~e~-----gI~ye~~~v~~~~~~~~~e~~~inp~gkVPvLvd~n~G~~I~ 204 (274)
-.+.+|..++|++|..+..++.+. ++.++.+++.. .++..+..+-..+|.++. +|..++
T Consensus 14 v~i~~F~~~~C~~C~~~~~~~~~l~~~~~~i~~~~vd~~~-----~~e~a~~~~V~~vPt~vi--dG~~~~ 77 (89)
T cd03026 14 INFETYVSLSCHNCPDVVQALNLMAVLNPNIEHEMIDGAL-----FQDEVEERGIMSVPAIFL--NGELFG 77 (89)
T ss_pred EEEEEEECCCCCCcHHHHHHHHHHHHHCCCceEEEEEhHh-----CHHHHHHcCCccCCEEEE--CCEEEE
Confidence 358899999999999988877664 57777776532 245667777778999998 666544
No 117
>PHA02125 thioredoxin-like protein
Probab=95.51 E-value=0.031 Score=41.37 Aligned_cols=51 Identities=18% Similarity=0.361 Sum_probs=39.3
Q ss_pred eEEEEcCCCccHHHHHHHHHHcCCCeEEEEcCCCCCCChhHHHhhCCCCceeEEEE
Q 024010 141 IEIYEYESCPFCRKVREIVAVLDLDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMVD 196 (274)
Q Consensus 141 l~LY~~~~cP~CrkVr~~L~e~gI~ye~~~v~~~~~~~~~e~~~inp~gkVPvLvd 196 (274)
+.+|+.++|++|+++...|+. +.++.+.++.+ ..+++.+..+-..+|++++
T Consensus 2 iv~f~a~wC~~Ck~~~~~l~~--~~~~~~~vd~~---~~~~l~~~~~v~~~PT~~~ 52 (75)
T PHA02125 2 IYLFGAEWCANCKMVKPMLAN--VEYTYVDVDTD---EGVELTAKHHIRSLPTLVN 52 (75)
T ss_pred EEEEECCCCHhHHHHHHHHHH--HhheEEeeeCC---CCHHHHHHcCCceeCeEEC
Confidence 789999999999999999875 45666555321 2457788888889999984
No 118
>PF03960 ArsC: ArsC family; InterPro: IPR006660 Several bacterial taxon have a chromosomal resistance system, encoded by the ars operon, for the detoxification of arsenate, arsenite, and antimonite []. This system transports arsenite and antimonite out of the cell. The pump is composed of two polypeptides, the products of the arsA and arsB genes. This two-subunit enzyme produces resistance to arsenite and antimonite. Arsenate, however, must first be reduced to arsenite before it is extruded. A third gene, arsC, expands the substrate specificity to allow for arsenate pumping and resistance. ArsC is an approximately 150-residue arsenate reductase that uses reduced glutathione (GSH) to convert arsenate to arsenite with a redox active cysteine residue in the active site. ArsC forms an active quaternary complex with GSH, arsenate, and glutaredoxin 1 (Grx1). The three ligands must be present simultaneously for reduction to occur []. The arsC family also comprises the Spx proteins which are GRAM-positive bacterial transcription factors that regulate the transcription of multiple genes in response to disulphide stress []. The arsC protein structure has been solved []. It belongs to the thioredoxin superfamily fold which is defined by a beta-sheet core surrounded by alpha-helices. The active cysteine residue of ArsC is located in the loop between the first beta-strand and the first helix, which is also conserved in the Spx protein and its homologues.; PDB: 2KOK_A 1SK1_A 1SK2_A 1JZW_A 1J9B_A 1S3C_A 1SD8_A 1SD9_A 1I9D_A 1SK0_A ....
Probab=95.18 E-value=0.033 Score=44.37 Aligned_cols=39 Identities=15% Similarity=0.336 Sum_probs=27.0
Q ss_pred EEcCCCccHHHHHHHHHHcCCCeEEEEcCCCCCCChhHHH
Q 024010 144 YEYESCPFCRKVREIVAVLDLDVLYYPCPRNGPNFRPKVL 183 (274)
Q Consensus 144 Y~~~~cP~CrkVr~~L~e~gI~ye~~~v~~~~~~~~~e~~ 183 (274)
|+.+.|.-|++++.+|+++|++|+++++...... ..++.
T Consensus 1 Y~~~~C~t~rka~~~L~~~gi~~~~~d~~k~p~s-~~el~ 39 (110)
T PF03960_consen 1 YGNPNCSTCRKALKWLEENGIEYEFIDYKKEPLS-REELR 39 (110)
T ss_dssp EE-TT-HHHHHHHHHHHHTT--EEEEETTTS----HHHHH
T ss_pred CcCCCCHHHHHHHHHHHHcCCCeEeehhhhCCCC-HHHHH
Confidence 8899999999999999999999999998654433 34443
No 119
>COG0435 ECM4 Predicted glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=95.16 E-value=0.032 Score=52.39 Aligned_cols=116 Identities=20% Similarity=0.273 Sum_probs=76.4
Q ss_pred CCeEEEEcCCCccHHHHHHHHHHcCCC--eEEEEc----CCCCCCChhH------------------HHh----hCCCCc
Q 024010 139 KPIEIYEYESCPFCRKVREIVAVLDLD--VLYYPC----PRNGPNFRPK------------------VLQ----MGGKKQ 190 (274)
Q Consensus 139 ~~l~LY~~~~cP~CrkVr~~L~e~gI~--ye~~~v----~~~~~~~~~e------------------~~~----inp~gk 190 (274)
....||....|||..|..++=+.||++ +..-.+ ..++.++.++ +.+ .++.-+
T Consensus 50 GRYhLYvslaCPWAHRTLI~R~LkgLE~~Isvsvv~~~m~~~GW~F~~~~~g~t~dpl~g~~~L~~~Y~~adP~YsgRvT 129 (324)
T COG0435 50 GRYHLYVSLACPWAHRTLIFRALKGLEPVISVSVVHPLMDENGWTFDPEFPGATGDPLYGIERLSQLYTRADPDYSGRVT 129 (324)
T ss_pred CeEEEEEEecCchHHHHHHHHHHhcccccceEEEecccccCCCceEcCCCCCCCCCcccchhHHHHHHhhcCCCCCCcee
Confidence 468999999999999999999999986 222222 1233322222 111 356679
Q ss_pred eeEEEEcCCCc-eeeCHHHHHHHHhhhcCC------CCCCcchhhhhhhhHHhhHHhhhccC---CCCCCCCCCC
Q 024010 191 FPYMVDPNTGV-SMYESDNIIKYLVGKYGD------GSVPFMLSLGLLTTLTEGFAMIGRLG---KGQSYTPAKL 255 (274)
Q Consensus 191 VPvLvd~n~G~-~I~ES~aIi~YL~~~y~~------~~~P~~~~~~~~~~l~~~~~~~~R~~---~g~~~~~~~~ 255 (274)
||+|.|....+ +-.||.+||+-|...|.+ ..+|..++ ..++.+.+|....+.+| +|+.-...++
T Consensus 130 VPVLwDk~~~tIVnNES~eIirm~N~aFde~~~~~~dlyP~~Lr-~eId~~n~~Iy~~vNNGVYk~GFA~tq~aY 203 (324)
T COG0435 130 VPVLWDKKTQTIVNNESAEIIRMFNSAFDEFGASAVDLYPEALR-TEIDELNKWIYDTVNNGVYKAGFATTQEAY 203 (324)
T ss_pred EEEEEecCCCeeecCCcHHHHHHHHHHHHHHhhhccccCCHHHH-HHHHHHHhhhcccccCceeeecccchHHHH
Confidence 99999854444 568999999999876642 25777653 35577788887777776 5554443333
No 120
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=94.71 E-value=0.17 Score=38.78 Aligned_cols=59 Identities=12% Similarity=0.152 Sum_probs=38.0
Q ss_pred CeEEEEcCCCccHHHHHHHHHH------cCCCeEEEEcCCCCCCChhHHHhhCCCCceeEEEEcCCCcee
Q 024010 140 PIEIYEYESCPFCRKVREIVAV------LDLDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMVDPNTGVSM 203 (274)
Q Consensus 140 ~l~LY~~~~cP~CrkVr~~L~e------~gI~ye~~~v~~~~~~~~~e~~~inp~gkVPvLvd~n~G~~I 203 (274)
-+.+|..++|+.|+.....+.+ .++.+..+++. ..+++.+..+-..+|.++.-++|..+
T Consensus 16 vlv~f~a~~C~~C~~~~~~l~~l~~~~~~~v~~~~id~d-----~~~~l~~~~~v~~vPt~~i~~~g~~v 80 (97)
T cd02949 16 ILVLYTSPTCGPCRTLKPILNKVIDEFDGAVHFVEIDID-----EDQEIAEAAGIMGTPTVQFFKDKELV 80 (97)
T ss_pred EEEEEECCCChhHHHHHHHHHHHHHHhCCceEEEEEECC-----CCHHHHHHCCCeeccEEEEEECCeEE
Confidence 4667777999999999887765 22444444432 23466766677899998532255543
No 121
>PF04908 SH3BGR: SH3-binding, glutamic acid-rich protein; InterPro: IPR006993 This family of proteins, which contains SH3BGRL3, is functionally uncharacterised. SH3BGRL3 is a highly conserved small protein, which is widely expressed and shows a significant similarity to glutaredoxin 1 (GRX1) of Escherichia coli which is predicted to belong to the thioredoxin superfamily. However, SH3BGRL3 lacks both conserved cysteine residues, which characterise the enzymatic active site of GRX. This structural feature raises the possibility that SH3BGRL3 and its homologues could function as endogenous modulators of GRX activity []. ; PDB: 1SJ6_A 1U6T_A 1WRY_A 1T1V_B 1J0F_A 2CT6_A.
Probab=94.70 E-value=0.11 Score=41.57 Aligned_cols=73 Identities=11% Similarity=0.008 Sum_probs=48.3
Q ss_pred CCeEEEEcCCCc------cHHHHHHHHHHcCCCeEEEEcCCCCCCChhHHHhhCC---------CCceeEEEEcCCCcee
Q 024010 139 KPIEIYEYESCP------FCRKVREIVAVLDLDVLYYPCPRNGPNFRPKVLQMGG---------KKQFPYMVDPNTGVSM 203 (274)
Q Consensus 139 ~~l~LY~~~~cP------~CrkVr~~L~e~gI~ye~~~v~~~~~~~~~e~~~inp---------~gkVPvLvd~n~G~~I 203 (274)
|.|++|....+. .|.++..+|+.++|+|+.++|.. ++..+.++++..+ ..-.|.|+. |+..+
T Consensus 1 m~I~vy~ss~sg~~~ikk~q~~v~~iL~a~kI~fe~vDIa~-~e~~r~~mr~~~g~~~~~~~~~~~lpPqiF~--~~~Y~ 77 (99)
T PF04908_consen 1 MVIKVYISSISGSREIKKRQQRVLMILEAKKIPFEEVDIAM-DEEARQWMRENAGPEEKDPGNGKPLPPQIFN--GDEYC 77 (99)
T ss_dssp -SEEEEE-SS-SSHHHHHHHHHHHHHHHHTT--EEEEETTT--HHHHHHHHHHT--CCCS-TSTT--S-EEEE--TTEEE
T ss_pred CEEEEEEecccCCHHHHHHHHHHHHHHHHcCCCcEEEeCcC-CHHHHHHHHHhccccccCCCCCCCCCCEEEe--CCEEE
Confidence 568889875544 57799999999999999999965 3445666776552 334579988 88888
Q ss_pred eCHHHHHHHHh
Q 024010 204 YESDNIIKYLV 214 (274)
Q Consensus 204 ~ES~aIi~YL~ 214 (274)
++-+++.+.-+
T Consensus 78 Gdye~f~ea~E 88 (99)
T PF04908_consen 78 GDYEDFEEANE 88 (99)
T ss_dssp EEHHHHHHHHC
T ss_pred eeHHHHHHHHh
Confidence 88777766543
No 122
>PF11287 DUF3088: Protein of unknown function (DUF3088); InterPro: IPR021439 This family of proteins with unknown function appears to be restricted to Proteobacteria.
Probab=94.44 E-value=0.17 Score=41.36 Aligned_cols=69 Identities=28% Similarity=0.542 Sum_probs=48.8
Q ss_pred CCccHHHHHHHHHH-----cCCCeEEEEcCCCCCCChhHHHhh-CC-CCceeEEEEcCCC------------ceeeCHHH
Q 024010 148 SCPFCRKVREIVAV-----LDLDVLYYPCPRNGPNFRPKVLQM-GG-KKQFPYMVDPNTG------------VSMYESDN 208 (274)
Q Consensus 148 ~cP~CrkVr~~L~e-----~gI~ye~~~v~~~~~~~~~e~~~i-np-~gkVPvLvd~n~G------------~~I~ES~a 208 (274)
.||.|..+.=+|.. ..++++.+...+ + +.++.+. +. ++..|+||..++. ..|.+...
T Consensus 23 ~Cp~c~~iEGlLa~~P~l~~~ldV~rV~f~R--P--R~~vi~llGE~~QslPvLVL~~~~~~~~~~~~~~~~rfi~d~~~ 98 (112)
T PF11287_consen 23 YCPHCAAIEGLLASFPDLRERLDVRRVDFPR--P--RQAVIALLGEANQSLPVLVLADGAPSPDDAGSHGGRRFIDDPRR 98 (112)
T ss_pred ECCchHHHHhHHhhChhhhhcccEEEeCCCC--c--hHHHHHHhChhccCCCEEEeCCCCCCcccccccCCeEEeCCHHH
Confidence 49999999888864 455666655433 2 4556654 33 5689999864222 27899999
Q ss_pred HHHHHhhhcCCC
Q 024010 209 IIKYLVGKYGDG 220 (274)
Q Consensus 209 Ii~YL~~~y~~~ 220 (274)
|++||+++||-+
T Consensus 99 I~~~La~r~g~p 110 (112)
T PF11287_consen 99 ILRYLAERHGFP 110 (112)
T ss_pred HHHHHHHHcCCC
Confidence 999999999853
No 123
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=93.91 E-value=0.32 Score=39.69 Aligned_cols=62 Identities=21% Similarity=0.291 Sum_probs=37.5
Q ss_pred CeEEEEcCCCccHHHHHHHH----HHcCCCeEEEEcCCCC--CCC----hhHHHhhCC----CCceeEEEEcCCCc
Q 024010 140 PIEIYEYESCPFCRKVREIV----AVLDLDVLYYPCPRNG--PNF----RPKVLQMGG----KKQFPYMVDPNTGV 201 (274)
Q Consensus 140 ~l~LY~~~~cP~CrkVr~~L----~e~gI~ye~~~v~~~~--~~~----~~e~~~inp----~gkVPvLvd~n~G~ 201 (274)
-+..|+.++||+|+.+.-.| ++.++++-.+++..+. +.. -.+|.+..+ -..+|.++.=.+|.
T Consensus 26 ~iv~f~~~~Cp~C~~~~P~l~~~~~~~~~~~y~vdvd~~~~~~~~~~~~~~~~~~~~~i~~~i~~~PT~v~~k~Gk 101 (122)
T TIGR01295 26 ATFFIGRKTCPYCRKFSGTLSGVVAQTKAPIYYIDSENNGSFEMSSLNDLTAFRSRFGIPTSFMGTPTFVHITDGK 101 (122)
T ss_pred EEEEEECCCChhHHHHhHHHHHHHHhcCCcEEEEECCCccCcCcccHHHHHHHHHHcCCcccCCCCCEEEEEeCCe
Confidence 36677889999999865554 4556777777775322 111 124555433 34599996422564
No 124
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=93.87 E-value=0.081 Score=52.89 Aligned_cols=74 Identities=14% Similarity=0.171 Sum_probs=51.9
Q ss_pred CCCeEEEEcCCCccHHHHHHHHHHc-----CCCeEEEEcCCCCCCChhHHHhhCCCCceeEEEEcCCCceeeC----HHH
Q 024010 138 EKPIEIYEYESCPFCRKVREIVAVL-----DLDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMVDPNTGVSMYE----SDN 208 (274)
Q Consensus 138 ~~~l~LY~~~~cP~CrkVr~~L~e~-----gI~ye~~~v~~~~~~~~~e~~~inp~gkVPvLvd~n~G~~I~E----S~a 208 (274)
...+++|..+.||||..+..++.+. +|..+.++ .+.-+++.+...-..||.++. +|..+++ -.+
T Consensus 117 ~~~i~~fv~~~Cp~Cp~~v~~~~~~a~~~~~i~~~~id-----~~~~~~~~~~~~v~~VP~~~i--~~~~~~~g~~~~~~ 189 (517)
T PRK15317 117 DFHFETYVSLSCHNCPDVVQALNLMAVLNPNITHTMID-----GALFQDEVEARNIMAVPTVFL--NGEEFGQGRMTLEE 189 (517)
T ss_pred CeEEEEEEcCCCCCcHHHHHHHHHHHHhCCCceEEEEE-----chhCHhHHHhcCCcccCEEEE--CCcEEEecCCCHHH
Confidence 4468999999999999988777653 33344433 234567787778889999998 5655554 356
Q ss_pred HHHHHhhhcC
Q 024010 209 IIKYLVGKYG 218 (274)
Q Consensus 209 Ii~YL~~~y~ 218 (274)
|++.+.+..+
T Consensus 190 ~~~~~~~~~~ 199 (517)
T PRK15317 190 ILAKLDTGAA 199 (517)
T ss_pred HHHHHhcccc
Confidence 7777776544
No 125
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=93.79 E-value=0.33 Score=34.81 Aligned_cols=57 Identities=11% Similarity=0.205 Sum_probs=40.6
Q ss_pred CeEEEEcCCCccHHHHHHHHHH-----cCCCeEEEEcCCCCCCChhHHHhhCCCCceeEEEEcCCCc
Q 024010 140 PIEIYEYESCPFCRKVREIVAV-----LDLDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMVDPNTGV 201 (274)
Q Consensus 140 ~l~LY~~~~cP~CrkVr~~L~e-----~gI~ye~~~v~~~~~~~~~e~~~inp~gkVPvLvd~n~G~ 201 (274)
-+.+|+.++|++|++....+.+ .++.+..+++.. ..++.+..+-..+|+++.-++|.
T Consensus 13 ~ll~~~~~~C~~C~~~~~~~~~~~~~~~~~~~~~i~~~~-----~~~~~~~~~v~~~P~~~~~~~g~ 74 (93)
T cd02947 13 VVVDFWAPWCGPCKAIAPVLEELAEEYPKVKFVKVDVDE-----NPELAEEYGVRSIPTFLFFKNGK 74 (93)
T ss_pred EEEEEECCCChhHHHhhHHHHHHHHHCCCceEEEEECCC-----ChhHHHhcCcccccEEEEEECCE
Confidence 4677788999999999988887 777777666532 23566666777899985322454
No 126
>KOG2903 consensus Predicted glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=93.63 E-value=0.32 Score=45.56 Aligned_cols=116 Identities=17% Similarity=0.197 Sum_probs=74.3
Q ss_pred CCeEEEEcCCCccHHHHHHHHHHcCCC----eEEEEc--CCCCCCCh-------------------------hHHH-h--
Q 024010 139 KPIEIYEYESCPFCRKVREIVAVLDLD----VLYYPC--PRNGPNFR-------------------------PKVL-Q-- 184 (274)
Q Consensus 139 ~~l~LY~~~~cP~CrkVr~~L~e~gI~----ye~~~v--~~~~~~~~-------------------------~e~~-~-- 184 (274)
..+-||..-.|||..|..++++.+|++ +..+.- ...+..+. .++- .
T Consensus 36 gryhLYvslaCPWAhRtLi~r~LKGL~~~i~~s~v~~~~d~~gW~F~~~~~~~nDs~~l~~~~d~~~g~k~l~elY~~~~ 115 (319)
T KOG2903|consen 36 GRYHLYVSLACPWAHRTLIVRALKGLEPAIGVSVVHWHLDDKGWRFLDEHIIINDSERLGVTPDPLNGAKRLRELYYIAS 115 (319)
T ss_pred ceEEEEEeccCcHHHHHHHHHHHcCccccceeEEeccccCCCcccCCCcccCCCchhcccCCCcccccchhHHHHHhhcC
Confidence 568999999999999999999999986 222211 11111110 1111 1
Q ss_pred --hCCCCceeEEEEcCCC-ceeeCHHHHHHHHh---hhcCC-C------CCCcchhhhhhhhHHhhHHhhhccC---CCC
Q 024010 185 --MGGKKQFPYMVDPNTG-VSMYESDNIIKYLV---GKYGD-G------SVPFMLSLGLLTTLTEGFAMIGRLG---KGQ 248 (274)
Q Consensus 185 --inp~gkVPvLvd~n~G-~~I~ES~aIi~YL~---~~y~~-~------~~P~~~~~~~~~~l~~~~~~~~R~~---~g~ 248 (274)
..++-+||||.|.... .+-.||.+||+-+. +.|-. . ++|.++ +..+++.-+|...-+.+| +|+
T Consensus 116 p~Y~grfTVPVLWD~k~ktIVnNES~eIIr~fNs~f~ef~~~~e~~~lDL~P~~L-~~~Ide~N~wvy~~INNGVYk~GF 194 (319)
T KOG2903|consen 116 PNYTGRFTVPVLWDLKTKTIVNNESSEIIRMFNSAFDEFNGIAENPVLDLYPSSL-RAQIDETNSWVYDKINNGVYKCGF 194 (319)
T ss_pred CCCCceEEEEEEEccccceeecCchHHHHHHHhhhhhhhhccccCCccccCCHHH-HHHHhhhhceecccccCceeeecc
Confidence 1355699999984333 36689999999999 44422 1 356554 346678888888877776 666
Q ss_pred CCCCCCC
Q 024010 249 SYTPAKL 255 (274)
Q Consensus 249 ~~~~~~~ 255 (274)
.-....+
T Consensus 195 A~~~e~Y 201 (319)
T KOG2903|consen 195 AEKQEAY 201 (319)
T ss_pred ccccchH
Confidence 5444443
No 127
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=93.40 E-value=0.058 Score=53.95 Aligned_cols=72 Identities=13% Similarity=0.176 Sum_probs=49.6
Q ss_pred CCCeEEEEcCCCccHHHHHHHHHHcC-----CCeEEEEcCCCCCCChhHHHhhCCCCceeEEEEcCCCceeeC----HHH
Q 024010 138 EKPIEIYEYESCPFCRKVREIVAVLD-----LDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMVDPNTGVSMYE----SDN 208 (274)
Q Consensus 138 ~~~l~LY~~~~cP~CrkVr~~L~e~g-----I~ye~~~v~~~~~~~~~e~~~inp~gkVPvLvd~n~G~~I~E----S~a 208 (274)
...+++|..+.||||..+..++.+.- |..+.++ .+.-+++.+...-..||.++. +|..+++ -.+
T Consensus 118 ~~~i~~f~~~~Cp~Cp~~v~~~~~~a~~~p~i~~~~id-----~~~~~~~~~~~~v~~VP~~~i--~~~~~~~g~~~~~~ 190 (515)
T TIGR03140 118 PLHFETYVSLTCQNCPDVVQALNQMALLNPNISHTMID-----GALFQDEVEALGIQGVPAVFL--NGEEFHNGRMDLAE 190 (515)
T ss_pred CeEEEEEEeCCCCCCHHHHHHHHHHHHhCCCceEEEEE-----chhCHHHHHhcCCcccCEEEE--CCcEEEecCCCHHH
Confidence 44689999999999999888876643 3333333 234567777777789999998 5655554 245
Q ss_pred HHHHHhhh
Q 024010 209 IIKYLVGK 216 (274)
Q Consensus 209 Ii~YL~~~ 216 (274)
+++.+.+.
T Consensus 191 ~~~~l~~~ 198 (515)
T TIGR03140 191 LLEKLEET 198 (515)
T ss_pred HHHHHhhc
Confidence 56666554
No 128
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=93.01 E-value=0.35 Score=48.95 Aligned_cols=60 Identities=18% Similarity=0.241 Sum_probs=44.6
Q ss_pred CCCeEEEEcCCCccHHHHHHHH----HHc-CCCeEEEEcCCCCCCChhHHHhhCCCCceeEEEEcCCCceee
Q 024010 138 EKPIEIYEYESCPFCRKVREIV----AVL-DLDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMVDPNTGVSMY 204 (274)
Q Consensus 138 ~~~l~LY~~~~cP~CrkVr~~L----~e~-gI~ye~~~v~~~~~~~~~e~~~inp~gkVPvLvd~n~G~~I~ 204 (274)
...+++|..++||+|-++..++ .++ +|..+.+++.. -+++.+..+-..||.++. ||.+++
T Consensus 477 ~~~i~v~~~~~C~~Cp~~~~~~~~~~~~~~~i~~~~i~~~~-----~~~~~~~~~v~~vP~~~i--~~~~~~ 541 (555)
T TIGR03143 477 PVNIKIGVSLSCTLCPDVVLAAQRIASLNPNVEAEMIDVSH-----FPDLKDEYGIMSVPAIVV--DDQQVY 541 (555)
T ss_pred CeEEEEEECCCCCCcHHHHHHHHHHHHhCCCceEEEEECcc-----cHHHHHhCCceecCEEEE--CCEEEE
Confidence 3458999999999999877644 455 78888887522 356777778889999998 665443
No 129
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=92.85 E-value=0.13 Score=41.10 Aligned_cols=52 Identities=15% Similarity=0.375 Sum_probs=36.5
Q ss_pred CeEEE-EcCCCccHHHHHHHHHHcC-----CCeEEEEcCCCCCCChhHHHhhCCCCceeEEEE
Q 024010 140 PIEIY-EYESCPFCRKVREIVAVLD-----LDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMVD 196 (274)
Q Consensus 140 ~l~LY-~~~~cP~CrkVr~~L~e~g-----I~ye~~~v~~~~~~~~~e~~~inp~gkVPvLvd 196 (274)
.+++| +.++|++|+.++.+|++.. +.+..+++. ..+++.+..+-..||.++.
T Consensus 24 ~vvv~f~a~wC~~C~~~~~~l~~la~~~~~i~~~~vd~d-----~~~~l~~~~~v~~vPt~~i 81 (113)
T cd02975 24 DLVVFSSKEGCQYCEVTKQLLEELSELSDKLKLEIYDFD-----EDKEKAEKYGVERVPTTIF 81 (113)
T ss_pred EEEEEeCCCCCCChHHHHHHHHHHHHhcCceEEEEEeCC-----cCHHHHHHcCCCcCCEEEE
Confidence 46666 4589999999988887543 334444432 2457888888899999964
No 130
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=92.79 E-value=0.22 Score=44.07 Aligned_cols=71 Identities=14% Similarity=0.279 Sum_probs=45.0
Q ss_pred CCeEEEEcCCCccHHHHHHHHHHc-----CCCeEEEEcCCCCCCChhHHHhhCCCCceeEEEEcCCCceeeC---HHHHH
Q 024010 139 KPIEIYEYESCPFCRKVREIVAVL-----DLDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMVDPNTGVSMYE---SDNII 210 (274)
Q Consensus 139 ~~l~LY~~~~cP~CrkVr~~L~e~-----gI~ye~~~v~~~~~~~~~e~~~inp~gkVPvLvd~n~G~~I~E---S~aIi 210 (274)
-.+++|+.++||+|..+..++++. ++.+..+++. ..+++.+..+-..||.++..++|..+.+ -.++.
T Consensus 135 v~I~~F~a~~C~~C~~~~~~l~~l~~~~~~i~~~~vD~~-----~~~~~~~~~~V~~vPtl~i~~~~~~~~G~~~~~~l~ 209 (215)
T TIGR02187 135 VRIEVFVTPTCPYCPYAVLMAHKFALANDKILGEMIEAN-----ENPDLAEKYGVMSVPKIVINKGVEEFVGAYPEEQFL 209 (215)
T ss_pred cEEEEEECCCCCCcHHHHHHHHHHHHhcCceEEEEEeCC-----CCHHHHHHhCCccCCEEEEecCCEEEECCCCHHHHH
Confidence 357788999999999998888763 2333333321 2456777788889999976334432222 24555
Q ss_pred HHHh
Q 024010 211 KYLV 214 (274)
Q Consensus 211 ~YL~ 214 (274)
++|.
T Consensus 210 ~~l~ 213 (215)
T TIGR02187 210 EYIL 213 (215)
T ss_pred HHHH
Confidence 5554
No 131
>KOG2824 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=89.51 E-value=0.54 Score=44.04 Aligned_cols=74 Identities=16% Similarity=0.282 Sum_probs=57.8
Q ss_pred CCCeEEEEcCCC------ccHHHHHHHHHHcCCCeEEEEcCCCCCCChhHHHhhCCC----CceeEEEEcCCCceeeCHH
Q 024010 138 EKPIEIYEYESC------PFCRKVREIVAVLDLDVLYYPCPRNGPNFRPKVLQMGGK----KQFPYMVDPNTGVSMYESD 207 (274)
Q Consensus 138 ~~~l~LY~~~~c------P~CrkVr~~L~e~gI~ye~~~v~~~~~~~~~e~~~inp~----gkVPvLvd~n~G~~I~ES~ 207 (274)
...+++|+.-.- -.|..||.+|+-.++.|++++|.++.. ++.|+..+-+. ...|.+++ +|..|++..
T Consensus 130 e~~VVvY~TsLRgvRkTfE~C~~VR~ilesf~V~v~ERDVSMd~~-fr~EL~~~lg~~~~~~~LPrVFV--~GryIGgae 206 (281)
T KOG2824|consen 130 EDRVVVYTTSLRGVRKTFEDCNAVRAILESFRVKVDERDVSMDSE-FREELQELLGEDEKAVSLPRVFV--KGRYIGGAE 206 (281)
T ss_pred CceEEEEEcccchhhhhHHHHHHHHHHHHhCceEEEEecccccHH-HHHHHHHHHhcccccCccCeEEE--ccEEeccHH
Confidence 347888876321 269999999999999999999976544 57788776554 48899999 899999998
Q ss_pred HHHHHHh
Q 024010 208 NIIKYLV 214 (274)
Q Consensus 208 aIi~YL~ 214 (274)
.|.+--+
T Consensus 207 eV~~LnE 213 (281)
T KOG2824|consen 207 EVVRLNE 213 (281)
T ss_pred Hhhhhhh
Confidence 8877543
No 132
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=88.60 E-value=1.2 Score=34.24 Aligned_cols=55 Identities=16% Similarity=0.164 Sum_probs=33.8
Q ss_pred CeEEEEcCCCccHHHHHHHH------H-H-c-CCCeEEEEcCCCCCCChhHHHhhCCCCceeEEE
Q 024010 140 PIEIYEYESCPFCRKVREIV------A-V-L-DLDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMV 195 (274)
Q Consensus 140 ~l~LY~~~~cP~CrkVr~~L------~-e-~-gI~ye~~~v~~~~~~~~~e~~~inp~gkVPvLv 195 (274)
-+..|+.++|++|++....+ . . . ++.+-.+++..+. ....++.+..+-..+|.++
T Consensus 14 vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~-~~~~~~~~~~~i~~~Pti~ 77 (104)
T cd02953 14 VFVDFTADWCVTCKVNEKVVFSDPEVQAALKKDVVLLRADWTKND-PEITALLKRFGVFGPPTYL 77 (104)
T ss_pred EEEEEEcchhHHHHHHHHHhcCCHHHHHHHhCCeEEEEEecCCCC-HHHHHHHHHcCCCCCCEEE
Confidence 36677889999999876433 1 1 2 3334444443221 1245677777788999885
No 133
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=88.60 E-value=0.37 Score=36.13 Aligned_cols=72 Identities=14% Similarity=0.330 Sum_probs=46.5
Q ss_pred CeEEEEcCCCccHHHHHHHHHH----c--CCCeEEEEcCCCCCCChhHHHhhCCCCceeEEEEcCCCcee------eCHH
Q 024010 140 PIEIYEYESCPFCRKVREIVAV----L--DLDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMVDPNTGVSM------YESD 207 (274)
Q Consensus 140 ~l~LY~~~~cP~CrkVr~~L~e----~--gI~ye~~~v~~~~~~~~~e~~~inp~gkVPvLvd~n~G~~I------~ES~ 207 (274)
-+..|+.++|+.|+..+-.+.+ . ++.|-.+++. ...++.+...-..+|.++.=.+|..+ .+..
T Consensus 20 vvv~f~~~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~-----~~~~l~~~~~v~~~Pt~~~~~~g~~~~~~~g~~~~~ 94 (103)
T PF00085_consen 20 VVVYFYAPWCPPCKAFKPILEKLAKEYKDNVKFAKVDCD-----ENKELCKKYGVKSVPTIIFFKNGKEVKRYNGPRNAE 94 (103)
T ss_dssp EEEEEESTTSHHHHHHHHHHHHHHHHTTTTSEEEEEETT-----TSHHHHHHTTCSSSSEEEEEETTEEEEEEESSSSHH
T ss_pred EEEEEeCCCCCccccccceecccccccccccccchhhhh-----ccchhhhccCCCCCCEEEEEECCcEEEEEECCCCHH
Confidence 4667777999999988866643 2 3444444442 23567777888899999532255422 2567
Q ss_pred HHHHHHhhh
Q 024010 208 NIIKYLVGK 216 (274)
Q Consensus 208 aIi~YL~~~ 216 (274)
.|.++|.++
T Consensus 95 ~l~~~i~~~ 103 (103)
T PF00085_consen 95 SLIEFIEKH 103 (103)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHcC
Confidence 888888753
No 134
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=87.82 E-value=0.76 Score=34.51 Aligned_cols=59 Identities=14% Similarity=0.131 Sum_probs=37.0
Q ss_pred eEEEEcCCCccHHHHHHHHHHc----CCCeEEEEcCCCCCCChhHHHhhCCCCceeEEEEcCCCce
Q 024010 141 IEIYEYESCPFCRKVREIVAVL----DLDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMVDPNTGVS 202 (274)
Q Consensus 141 l~LY~~~~cP~CrkVr~~L~e~----gI~ye~~~v~~~~~~~~~e~~~inp~gkVPvLvd~n~G~~ 202 (274)
+..|+.++|+.|++....|++. ...+....+.. ...+++.+..+-..+|+++.=++|..
T Consensus 18 ~v~f~~~~C~~C~~~~~~l~~l~~~~~~~i~~~~vd~---~~~~~~~~~~~i~~~Pt~~~~~~g~~ 80 (97)
T cd02984 18 VLHFWAPWAEPCKQMNQVFEELAKEAFPSVLFLSIEA---EELPEISEKFEITAVPTFVFFRNGTI 80 (97)
T ss_pred EEEEECCCCHHHHHHhHHHHHHHHHhCCceEEEEEcc---ccCHHHHHhcCCccccEEEEEECCEE
Confidence 5667779999999998877652 23344444432 12345666666778998853225653
No 135
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=87.54 E-value=1.2 Score=33.16 Aligned_cols=70 Identities=10% Similarity=0.214 Sum_probs=40.3
Q ss_pred eEEEEcCCCccHHHHHHHHHH----cC--CCeEEEEcCCCCCCChhHHHhhCCCCceeEEEEcCCCcee------eCHHH
Q 024010 141 IEIYEYESCPFCRKVREIVAV----LD--LDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMVDPNTGVSM------YESDN 208 (274)
Q Consensus 141 l~LY~~~~cP~CrkVr~~L~e----~g--I~ye~~~v~~~~~~~~~e~~~inp~gkVPvLvd~n~G~~I------~ES~a 208 (274)
+..|+.++|+.|+.....+.. .+ +.|-.+++.. .+++.+..+-..+|.++.-++|..+ ....+
T Consensus 18 vi~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~-----~~~~~~~~~v~~~P~~~~~~~g~~~~~~~g~~~~~~ 92 (101)
T TIGR01068 18 LVDFWAPWCGPCKMIAPILEELAKEYEGKVKFVKLNVDE-----NPDIAAKYGIRSIPTLLLFKNGKEVDRSVGALPKAA 92 (101)
T ss_pred EEEEECCCCHHHHHhCHHHHHHHHHhcCCeEEEEEECCC-----CHHHHHHcCCCcCCEEEEEeCCcEeeeecCCCCHHH
Confidence 455566899999988766644 22 3444444322 3456666677789998532244322 11466
Q ss_pred HHHHHhh
Q 024010 209 IIKYLVG 215 (274)
Q Consensus 209 Ii~YL~~ 215 (274)
|..+|.+
T Consensus 93 l~~~l~~ 99 (101)
T TIGR01068 93 LKQLINK 99 (101)
T ss_pred HHHHHHh
Confidence 6666654
No 136
>PTZ00051 thioredoxin; Provisional
Probab=87.24 E-value=0.76 Score=34.64 Aligned_cols=57 Identities=12% Similarity=0.117 Sum_probs=36.6
Q ss_pred CeEEEEcCCCccHHHHHHHHHH-----cCCCeEEEEcCCCCCCChhHHHhhCCCCceeEEEEcCCCc
Q 024010 140 PIEIYEYESCPFCRKVREIVAV-----LDLDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMVDPNTGV 201 (274)
Q Consensus 140 ~l~LY~~~~cP~CrkVr~~L~e-----~gI~ye~~~v~~~~~~~~~e~~~inp~gkVPvLvd~n~G~ 201 (274)
-+..|+.++|+.|++..-.+.. .++.|-.+++. ...++.+..+-..+|+++.-.+|.
T Consensus 21 vli~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~vd~~-----~~~~~~~~~~v~~~Pt~~~~~~g~ 82 (98)
T PTZ00051 21 VIVDFYAEWCGPCKRIAPFYEECSKEYTKMVFVKVDVD-----ELSEVAEKENITSMPTFKVFKNGS 82 (98)
T ss_pred EEEEEECCCCHHHHHHhHHHHHHHHHcCCcEEEEEECc-----chHHHHHHCCCceeeEEEEEeCCe
Confidence 3566777999999988776655 24444444432 234567777778999985422554
No 137
>KOG3027 consensus Mitochondrial outer membrane protein Metaxin 2, Metaxin 1-binding protein [Cell wall/membrane/envelope biogenesis; Intracellular trafficking, secretion, and vesicular transport]
Probab=87.05 E-value=2.2 Score=38.86 Aligned_cols=77 Identities=13% Similarity=0.035 Sum_probs=56.3
Q ss_pred CeEEEEcCCCccHHHHHHHHHHcCCCeEEEEcCCCCCCChhHHHhhCCCCceeEEEEcCCCceeeCHHHHHHHHhhhcC-
Q 024010 140 PIEIYEYESCPFCRKVREIVAVLDLDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMVDPNTGVSMYESDNIIKYLVGKYG- 218 (274)
Q Consensus 140 ~l~LY~~~~cP~CrkVr~~L~e~gI~ye~~~v~~~~~~~~~e~~~inp~gkVPvLvd~n~G~~I~ES~aIi~YL~~~y~- 218 (274)
.+-|+.. ..|..|..+|+..++||.++..+.. | -++|.|+||.|.. |.+++.|=..|+.+...+--
T Consensus 28 QiLl~d~---ascLAVqtfLrMcnLPf~v~~~~Na------e--fmSP~G~vPllr~--g~~~~aef~pIV~fVeak~~~ 94 (257)
T KOG3027|consen 28 QILLPDN---ASCLAVQTFLRMCNLPFNVRQRANA------E--FMSPGGKVPLLRI--GKTLFAEFEPIVDFVEAKGVT 94 (257)
T ss_pred ccccccc---hhHHHHHHHHHHcCCCceeeecCCc------c--ccCCCCCCceeee--cchhhhhhhHHHHHHHHhccc
Confidence 3445543 4699999999999999999875321 2 3578889999999 78899999999999987642
Q ss_pred CCCCCcchhhh
Q 024010 219 DGSVPFMLSLG 229 (274)
Q Consensus 219 ~~~~P~~~~~~ 229 (274)
-..|-.+.+++
T Consensus 95 l~s~lsE~qka 105 (257)
T KOG3027|consen 95 LTSWLSEDQKA 105 (257)
T ss_pred hhhhhhhHHHH
Confidence 12444444433
No 138
>PRK09381 trxA thioredoxin; Provisional
Probab=86.42 E-value=6 Score=30.44 Aligned_cols=61 Identities=13% Similarity=0.113 Sum_probs=34.4
Q ss_pred CeEEEEcCCCccHHHHHHHHHH----cCCCeEEEEcCCCCCCChhHHHhhCCCCceeEEEEcCCCcee
Q 024010 140 PIEIYEYESCPFCRKVREIVAV----LDLDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMVDPNTGVSM 203 (274)
Q Consensus 140 ~l~LY~~~~cP~CrkVr~~L~e----~gI~ye~~~v~~~~~~~~~e~~~inp~gkVPvLvd~n~G~~I 203 (274)
-+..|+.++||.|+...-.+++ .+-.+....+..+ ..+.+.+..+-..+|.++.-++|..+
T Consensus 24 vvv~f~~~~C~~C~~~~p~~~~l~~~~~~~~~~~~vd~~---~~~~~~~~~~v~~~Pt~~~~~~G~~~ 88 (109)
T PRK09381 24 ILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNID---QNPGTAPKYGIRGIPTLLLFKNGEVA 88 (109)
T ss_pred EEEEEECCCCHHHHHHhHHHHHHHHHhCCCcEEEEEECC---CChhHHHhCCCCcCCEEEEEeCCeEE
Confidence 3556667999999988755543 2212333333221 12345555667789998532256543
No 139
>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold. They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.
Probab=86.38 E-value=1.3 Score=38.37 Aligned_cols=36 Identities=22% Similarity=0.630 Sum_probs=27.3
Q ss_pred CCCeEEEEcCCCccHHHHHHHHHH--cCCCeEEEEcCC
Q 024010 138 EKPIEIYEYESCPFCRKVREIVAV--LDLDVLYYPCPR 173 (274)
Q Consensus 138 ~~~l~LY~~~~cP~CrkVr~~L~e--~gI~ye~~~v~~ 173 (274)
...+.+|+.+.||||++....+.+ .++.+..+.++.
T Consensus 78 ~~~i~~f~D~~Cp~C~~~~~~l~~~~~~v~v~~~~~p~ 115 (197)
T cd03020 78 KRVVYVFTDPDCPYCRKLEKELKPNADGVTVRIFPVPI 115 (197)
T ss_pred CEEEEEEECCCCccHHHHHHHHhhccCceEEEEEEcCc
Confidence 345788888999999999999974 566666666554
No 140
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=86.31 E-value=8.2 Score=32.03 Aligned_cols=82 Identities=13% Similarity=0.187 Sum_probs=45.2
Q ss_pred CeEEEEcCCCccHHHHHHHHHHc------CCCeEEEEcCCCCCCChhHHHhhCCCCceeEEE-EcCCCceee------CH
Q 024010 140 PIEIYEYESCPFCRKVREIVAVL------DLDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMV-DPNTGVSMY------ES 206 (274)
Q Consensus 140 ~l~LY~~~~cP~CrkVr~~L~e~------gI~ye~~~v~~~~~~~~~e~~~inp~gkVPvLv-d~n~G~~I~------ES 206 (274)
-+..|+-.+|++|++..-.+.+. ++.|..+.+.. . ...++.+..+-..+|.++ ...+|.++. .-
T Consensus 23 vvV~F~A~WC~~C~~~~p~l~~l~~~~~~~~~~v~v~vd~--~-~~~~~~~~~~V~~iPt~v~~~~~G~~v~~~~G~~~~ 99 (142)
T cd02950 23 TLVEFYADWCTVCQEMAPDVAKLKQKYGDQVNFVMLNVDN--P-KWLPEIDRYRVDGIPHFVFLDREGNEEGQSIGLQPK 99 (142)
T ss_pred EEEEEECCcCHHHHHhHHHHHHHHHHhccCeeEEEEEcCC--c-ccHHHHHHcCCCCCCEEEEECCCCCEEEEEeCCCCH
Confidence 35556668999999877666532 23343334322 1 123556666777899884 322565442 23
Q ss_pred HHHHHHHhhhcCCCCCCc
Q 024010 207 DNIIKYLVGKYGDGSVPF 224 (274)
Q Consensus 207 ~aIi~YL~~~y~~~~~P~ 224 (274)
..|.+.|.+.......|.
T Consensus 100 ~~l~~~l~~l~~~~~~~~ 117 (142)
T cd02950 100 QVLAQNLDALVAGEPLPY 117 (142)
T ss_pred HHHHHHHHHHHcCCCCCc
Confidence 556666665554333333
No 141
>PRK10877 protein disulfide isomerase II DsbC; Provisional
Probab=86.23 E-value=1 Score=40.74 Aligned_cols=35 Identities=26% Similarity=0.602 Sum_probs=25.4
Q ss_pred CCeEEEEcCCCccHHHHHHHHHHc---CCCeEEEEcCC
Q 024010 139 KPIEIYEYESCPFCRKVREIVAVL---DLDVLYYPCPR 173 (274)
Q Consensus 139 ~~l~LY~~~~cP~CrkVr~~L~e~---gI~ye~~~v~~ 173 (274)
..|.+|+.+.||||+|...-+.+. |+.+.+..++.
T Consensus 109 ~~I~vFtDp~CpyCkkl~~~l~~~~~~~v~v~~~~~P~ 146 (232)
T PRK10877 109 HVITVFTDITCGYCHKLHEQMKDYNALGITVRYLAFPR 146 (232)
T ss_pred EEEEEEECCCChHHHHHHHHHHHHhcCCeEEEEEeccC
Confidence 357888999999999998888763 45555544454
No 142
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=85.47 E-value=1.8 Score=32.29 Aligned_cols=52 Identities=10% Similarity=0.117 Sum_probs=32.9
Q ss_pred CCeEEEEcCCCccHHHHHHHHHH-----cC---CCeEEEEcCCCCCCChhHHHhhCCCCceeEEE
Q 024010 139 KPIEIYEYESCPFCRKVREIVAV-----LD---LDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMV 195 (274)
Q Consensus 139 ~~l~LY~~~~cP~CrkVr~~L~e-----~g---I~ye~~~v~~~~~~~~~e~~~inp~gkVPvLv 195 (274)
.-+.+|+.++|+.|++....+.. .+ +.+-.+++. ...++.+..+-..+|.++
T Consensus 15 ~~~i~f~~~~C~~c~~~~~~~~~~~~~~~~~~~~~~~~~d~~-----~~~~~~~~~~i~~~P~~~ 74 (102)
T TIGR01126 15 DVLVEFYAPWCGHCKNLAPEYEKLAKELKGDPDIVLAKVDAT-----AEKDLASRFGVSGFPTIK 74 (102)
T ss_pred cEEEEEECCCCHHHHhhChHHHHHHHHhccCCceEEEEEEcc-----chHHHHHhCCCCcCCEEE
Confidence 44788888999999986555533 21 333333332 235666667778899883
No 143
>KOG3028 consensus Translocase of outer mitochondrial membrane complex, subunit TOM37/Metaxin 1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.39 E-value=8.7 Score=36.74 Aligned_cols=59 Identities=10% Similarity=0.116 Sum_probs=45.8
Q ss_pred CCccHHHHHHHHHHcCCCeEEEEcCCCCCCChhHHHhhCCCCceeEEEEcCCCceeeCHHHHHHHHhhh
Q 024010 148 SCPFCRKVREIVAVLDLDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMVDPNTGVSMYESDNIIKYLVGK 216 (274)
Q Consensus 148 ~cP~CrkVr~~L~e~gI~ye~~~v~~~~~~~~~e~~~inp~gkVPvLvd~n~G~~I~ES~aIi~YL~~~ 216 (274)
.|+-|..+.++++..+-+.++..... .. .++.|++|+|++. +|..+..-..|+.||...
T Consensus 16 id~~sL~~l~y~kl~~~~l~v~~ssN-~~--------~s~sg~LP~l~~~-ng~~va~~~~iv~~L~k~ 74 (313)
T KOG3028|consen 16 IDPDSLAALIYLKLAGAPLKVVVSSN-PW--------RSPSGKLPYLITD-NGTKVAGPVKIVQFLKKN 74 (313)
T ss_pred cChhHHHHHHHHHHhCCCceeEeecC-CC--------CCCCCCCCeEEec-CCceeccHHHHHHHHHHh
Confidence 58999999999999995555444322 11 3578899999874 678999999999999873
No 144
>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional
Probab=84.97 E-value=1.7 Score=39.77 Aligned_cols=32 Identities=9% Similarity=0.362 Sum_probs=23.3
Q ss_pred CeEEEEcCCCccHHHHHHHHHH---cC-CCeEEEEc
Q 024010 140 PIEIYEYESCPFCRKVREIVAV---LD-LDVLYYPC 171 (274)
Q Consensus 140 ~l~LY~~~~cP~CrkVr~~L~e---~g-I~ye~~~v 171 (274)
.|.+|+.+.||||+|.+..+.. .| +.+..+++
T Consensus 120 ~I~vFtDp~CpyC~kl~~~l~~~~~~g~V~v~~ip~ 155 (251)
T PRK11657 120 IVYVFADPNCPYCKQFWQQARPWVDSGKVQLRHILV 155 (251)
T ss_pred EEEEEECCCChhHHHHHHHHHHHhhcCceEEEEEec
Confidence 4778888999999999877653 33 55555554
No 145
>PF04134 DUF393: Protein of unknown function, DUF393; InterPro: IPR007263 The DCC family, named after the conserved N-terminal DxxCxxC motif, encompasses COG3011 from COG. Proteins in this family are predicted to have a thioredoxin-like fold which, together with the presence of an invariant catalytic cysteine residue, suggests that they are a novel group of thiol-disulphide oxidoreductases []. As some of the bacterial proteins are encoded near penicillin-binding proteins, it has been suggested that these may be involved in redox regulation of cell wall biosynthesis [].
Probab=84.24 E-value=2.2 Score=33.56 Aligned_cols=69 Identities=17% Similarity=0.351 Sum_probs=42.0
Q ss_pred EEEcCCCccHHHHHHHHHHcCC--CeEEEEcCCCCCCChhHHH---hhCC--CCceeEEEEcCCCc-eeeCHHHHHHHHh
Q 024010 143 IYEYESCPFCRKVREIVAVLDL--DVLYYPCPRNGPNFRPKVL---QMGG--KKQFPYMVDPNTGV-SMYESDNIIKYLV 214 (274)
Q Consensus 143 LY~~~~cP~CrkVr~~L~e~gI--~ye~~~v~~~~~~~~~e~~---~inp--~gkVPvLvd~n~G~-~I~ES~aIi~YL~ 214 (274)
||....||+|.+....++..+. .++.+++... + ..++. .+++ ..+.-.++. +|. +..+++|+++-+.
T Consensus 1 v~YDg~C~lC~~~~~~l~~~d~~~~l~~~~~~~~-~--~~~~~~~~~~~~~~~~~~l~~~~--~g~~~~~G~~A~~~l~~ 75 (114)
T PF04134_consen 1 VFYDGDCPLCRREVRFLRRRDRGGRLRFVDIQSE-P--DQALLASYGISPEDADSRLHLID--DGERVYRGSDAVLRLLR 75 (114)
T ss_pred CEECCCCHhHHHHHHHHHhcCCCCCEEEEECCCh-h--hhhHHHhcCcCHHHHcCeeEEec--CCCEEEEcHHHHHHHHH
Confidence 4567789999999999999876 4666665211 1 11212 1221 113333333 555 9999999988766
Q ss_pred hh
Q 024010 215 GK 216 (274)
Q Consensus 215 ~~ 216 (274)
..
T Consensus 76 ~~ 77 (114)
T PF04134_consen 76 RL 77 (114)
T ss_pred Hc
Confidence 54
No 146
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=83.96 E-value=5.2 Score=31.75 Aligned_cols=57 Identities=12% Similarity=0.263 Sum_probs=32.2
Q ss_pred CCeEEEEcCCCccHHHHHHHHH-------H--cCCCeEEEEcCCCCC--------CChhHHHhhCCCCceeEEE
Q 024010 139 KPIEIYEYESCPFCRKVREIVA-------V--LDLDVLYYPCPRNGP--------NFRPKVLQMGGKKQFPYMV 195 (274)
Q Consensus 139 ~~l~LY~~~~cP~CrkVr~~L~-------e--~gI~ye~~~v~~~~~--------~~~~e~~~inp~gkVPvLv 195 (274)
.-+..|+.++|++|++....+. . .++.+-.+++..+.. ....++....+-..+|.++
T Consensus 16 ~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~~~~~~~~~~~~~~~~l~~~~~v~~~Pt~~ 89 (125)
T cd02951 16 PLLLLFSQPGCPYCDKLKRDYLNDPAVQAYIRAHFVVVYINIDGDKEVTDFDGEALSEKELARKYRVRFTPTVI 89 (125)
T ss_pred cEEEEEeCCCCHHHHHHHHHhcCcHHHHHHHHhheEEEEEEccCCceeeccCCCCccHHHHHHHcCCccccEEE
Confidence 3466777899999998764331 1 233333333322110 0124566666777899984
No 147
>COG3011 Predicted thiol-disulfide oxidoreductase [General function prediction only]
Probab=83.71 E-value=10 Score=32.11 Aligned_cols=76 Identities=14% Similarity=0.108 Sum_probs=50.8
Q ss_pred CeEEEEcCCCccHHHHHHHHHHcCCCeEEEEcCCCCCCChhHHHhhCCCCce-e--EEEEcCCCceeeCHHHHHHHHhhh
Q 024010 140 PIEIYEYESCPFCRKVREIVAVLDLDVLYYPCPRNGPNFRPKVLQMGGKKQF-P--YMVDPNTGVSMYESDNIIKYLVGK 216 (274)
Q Consensus 140 ~l~LY~~~~cP~CrkVr~~L~e~gI~ye~~~v~~~~~~~~~e~~~inp~gkV-P--vLvd~n~G~~I~ES~aIi~YL~~~ 216 (274)
.++++..-.|++|-....+|..++..-..+.....++. ...+.+..|...- + ++.++ +|....+|+|+++-+...
T Consensus 9 ~~vvlyDG~C~lC~~~vrfLi~~D~~~~i~f~~~q~e~-g~~~l~~~~l~~~~~~s~~~~~-~g~~~~~sdA~~~i~~~L 86 (137)
T COG3011 9 DLVVLYDGVCPLCDGWVRFLIRRDQGGRIRFAALQSEP-GQALLEAAGLDPEDVDSVLLVE-AGQLLVGSDAAIRILRLL 86 (137)
T ss_pred CEEEEECCcchhHHHHHHHHHHhccCCcEEEEeccCch-hhhHHhhcCCChhhhheeeEec-CCceEeccHHHHHHHHHC
Confidence 45666677899999999999988777444444333332 3455665554421 2 22332 888999999999988765
Q ss_pred c
Q 024010 217 Y 217 (274)
Q Consensus 217 y 217 (274)
-
T Consensus 87 ~ 87 (137)
T COG3011 87 P 87 (137)
T ss_pred C
Confidence 4
No 148
>PRK10996 thioredoxin 2; Provisional
Probab=83.61 E-value=9.1 Score=31.54 Aligned_cols=75 Identities=11% Similarity=0.045 Sum_probs=44.2
Q ss_pred CCeEEEEcCCCccHHHHHHHHHH----cCCCeEEEEcCCCCCCChhHHHhhCCCCceeEEEEcCCCceee------CHHH
Q 024010 139 KPIEIYEYESCPFCRKVREIVAV----LDLDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMVDPNTGVSMY------ESDN 208 (274)
Q Consensus 139 ~~l~LY~~~~cP~CrkVr~~L~e----~gI~ye~~~v~~~~~~~~~e~~~inp~gkVPvLvd~n~G~~I~------ES~a 208 (274)
.-+..|+.++|+.|+...-.+.+ .+-.+....++. ...+++.+..+-..+|.++.-++|..+. ....
T Consensus 54 ~vvv~F~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~---~~~~~l~~~~~V~~~Ptlii~~~G~~v~~~~G~~~~e~ 130 (139)
T PRK10996 54 PVVIDFWAPWCGPCRNFAPIFEDVAAERSGKVRFVKVNT---EAERELSARFRIRSIPTIMIFKNGQVVDMLNGAVPKAP 130 (139)
T ss_pred eEEEEEECCCCHHHHHHHHHHHHHHHHhCCCeEEEEEeC---CCCHHHHHhcCCCccCEEEEEECCEEEEEEcCCCCHHH
Confidence 34666777999999987655543 232344444422 1235677777788999995322565332 2455
Q ss_pred HHHHHhhh
Q 024010 209 IIKYLVGK 216 (274)
Q Consensus 209 Ii~YL~~~ 216 (274)
|..||.+.
T Consensus 131 l~~~l~~~ 138 (139)
T PRK10996 131 FDSWLNEA 138 (139)
T ss_pred HHHHHHHh
Confidence 66666643
No 149
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=83.46 E-value=1.4 Score=35.19 Aligned_cols=61 Identities=10% Similarity=0.133 Sum_probs=39.6
Q ss_pred CCeEEEEcCCCccHHHHHHHHHH-----cCCCeEEEEcCCCCCCChhHHHhhCCCCceeEEEEcCCCceee
Q 024010 139 KPIEIYEYESCPFCRKVREIVAV-----LDLDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMVDPNTGVSMY 204 (274)
Q Consensus 139 ~~l~LY~~~~cP~CrkVr~~L~e-----~gI~ye~~~v~~~~~~~~~e~~~inp~gkVPvLvd~n~G~~I~ 204 (274)
.-+..|+.++|+.|+.+.-.|++ .++.+-.+++. ..+++.+..+-..+|+++.=.+|..+.
T Consensus 24 ~vvV~f~a~~c~~C~~~~p~l~~la~~~~~i~f~~Vd~~-----~~~~l~~~~~v~~vPt~l~fk~G~~v~ 89 (113)
T cd02989 24 RVVCHFYHPEFFRCKIMDKHLEILAKKHLETKFIKVNAE-----KAPFLVEKLNIKVLPTVILFKNGKTVD 89 (113)
T ss_pred cEEEEEECCCCccHHHHHHHHHHHHHHcCCCEEEEEEcc-----cCHHHHHHCCCccCCEEEEEECCEEEE
Confidence 34566667999999988877755 34444444432 234677777888999995322666544
No 150
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=82.64 E-value=4.6 Score=35.65 Aligned_cols=76 Identities=14% Similarity=0.272 Sum_probs=47.8
Q ss_pred CCeEEEEc---CCCccHHHHHHHHHHcC-----CCeEEEEcCCCCCCChhHHHhhCCCCceeEEEEcCCCcee----eC-
Q 024010 139 KPIEIYEY---ESCPFCRKVREIVAVLD-----LDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMVDPNTGVSM----YE- 205 (274)
Q Consensus 139 ~~l~LY~~---~~cP~CrkVr~~L~e~g-----I~ye~~~v~~~~~~~~~e~~~inp~gkVPvLvd~n~G~~I----~E- 205 (274)
..+.+|.. +||++|+.+.-.+++.. +.+..+.+.. + ..+++.+..+-..+|.++.=++|..+ .+
T Consensus 21 ~~i~~f~~~~a~wC~~C~~~~p~l~~la~~~~~~~i~~v~vd~--~-~~~~l~~~~~V~~~Pt~~~f~~g~~~~~~~~G~ 97 (215)
T TIGR02187 21 VEIVVFTDNDKEGCQYCKETEQLLEELSEVSPKLKLEIYDFDT--P-EDKEEAEKYGVERVPTTIILEEGKDGGIRYTGI 97 (215)
T ss_pred eEEEEEcCCCCCCCCchHHHHHHHHHHHhhCCCceEEEEecCC--c-ccHHHHHHcCCCccCEEEEEeCCeeeEEEEeec
Confidence 34778877 89999999888887653 2333444322 1 24577888888899999541144322 12
Q ss_pred --HHHHHHHHhhhc
Q 024010 206 --SDNIIKYLVGKY 217 (274)
Q Consensus 206 --S~aIi~YL~~~y 217 (274)
-..+..+|...+
T Consensus 98 ~~~~~l~~~i~~~~ 111 (215)
T TIGR02187 98 PAGYEFAALIEDIV 111 (215)
T ss_pred CCHHHHHHHHHHHH
Confidence 345666666654
No 151
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=82.56 E-value=6.1 Score=30.47 Aligned_cols=51 Identities=10% Similarity=0.185 Sum_probs=33.1
Q ss_pred CeEEEEcCCCccHHHHHHHHHHc------------CCCeEEEEcCCCCCCChhHHHhhCCCCceeEEE
Q 024010 140 PIEIYEYESCPFCRKVREIVAVL------------DLDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMV 195 (274)
Q Consensus 140 ~l~LY~~~~cP~CrkVr~~L~e~------------gI~ye~~~v~~~~~~~~~e~~~inp~gkVPvLv 195 (274)
-+..|+-++|++|++..-.+.+. .+.+-.+++.. .+++.+..+-..+|.++
T Consensus 21 vlv~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~~~~~~vd~d~-----~~~l~~~~~v~~~Ptl~ 83 (108)
T cd02996 21 VLVNFYADWCRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDCDK-----ESDIADRYRINKYPTLK 83 (108)
T ss_pred EEEEEECCCCHHHHhhHHHHHHHHHHHhhccCCCCcEEEEEEECCC-----CHHHHHhCCCCcCCEEE
Confidence 35667779999999887666421 13333344422 24677777888999995
No 152
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=82.15 E-value=4.1 Score=32.77 Aligned_cols=60 Identities=12% Similarity=0.157 Sum_probs=33.7
Q ss_pred eEEEEcCCCccHHHHHHHHHH------cCCCeEEEEcCCCCCCChhHHHhhCCCC-ceeEEEE-cCCCcee
Q 024010 141 IEIYEYESCPFCRKVREIVAV------LDLDVLYYPCPRNGPNFRPKVLQMGGKK-QFPYMVD-PNTGVSM 203 (274)
Q Consensus 141 l~LY~~~~cP~CrkVr~~L~e------~gI~ye~~~v~~~~~~~~~e~~~inp~g-kVPvLvd-~n~G~~I 203 (274)
+..|+..+|++|++..-.+.+ .+..|..+.+..+... ...+.+..+ .+|.++. ..+|..+
T Consensus 23 lV~F~a~WC~~C~~~~~~~~~~~~~~~~~~~fv~v~vd~~~~~---~~~~~~~~g~~vPt~~f~~~~Gk~~ 90 (117)
T cd02959 23 MLLIHKTWCGACKALKPKFAESKEISELSHNFVMVNLEDDEEP---KDEEFSPDGGYIPRILFLDPSGDVH 90 (117)
T ss_pred EEEEeCCcCHHHHHHHHHHhhhHHHHhhcCcEEEEEecCCCCc---hhhhcccCCCccceEEEECCCCCCc
Confidence 556677999999988766655 2335555555432211 112333333 4999853 2255543
No 153
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=81.46 E-value=2.1 Score=33.82 Aligned_cols=70 Identities=9% Similarity=0.149 Sum_probs=39.7
Q ss_pred CeEEEEcCCCccHHHHHHHHH----H-c--CCCeEEEEcCCCCCCChhHHHhhCCCCceeEEEEcCCCcee---eC---H
Q 024010 140 PIEIYEYESCPFCRKVREIVA----V-L--DLDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMVDPNTGVSM---YE---S 206 (274)
Q Consensus 140 ~l~LY~~~~cP~CrkVr~~L~----e-~--gI~ye~~~v~~~~~~~~~e~~~inp~gkVPvLvd~n~G~~I---~E---S 206 (274)
-+..|+.++|+.|+...-.+. + . ++.+-.+++.. .+++.+..+-..+|.++.-++|..+ .+ .
T Consensus 27 vlV~F~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~d~-----~~~l~~~~~V~~~Pt~~i~~~g~~~~~~~G~~~~ 101 (111)
T cd02963 27 YLIKITSDWCFSCIHIEPVWKEVIQELEPLGVGIATVNAGH-----ERRLARKLGAHSVPAIVGIINGQVTFYHDSSFTK 101 (111)
T ss_pred EEEEEECCccHhHHHhhHHHHHHHHHHHhcCceEEEEeccc-----cHHHHHHcCCccCCEEEEEECCEEEEEecCCCCH
Confidence 456677799999986654432 2 2 34444444422 2356666777899998532255422 11 3
Q ss_pred HHHHHHHh
Q 024010 207 DNIIKYLV 214 (274)
Q Consensus 207 ~aIi~YL~ 214 (274)
..|.++|.
T Consensus 102 ~~l~~~i~ 109 (111)
T cd02963 102 QHVVDFVR 109 (111)
T ss_pred HHHHHHHh
Confidence 55555554
No 154
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=81.12 E-value=13 Score=28.01 Aligned_cols=59 Identities=15% Similarity=0.171 Sum_probs=34.3
Q ss_pred CeEEEEcCCCccHHHHHHHHHHc-----CCCeEEEEcCCCCCCChhHHHhhCCCCceeEEEEcCCCc
Q 024010 140 PIEIYEYESCPFCRKVREIVAVL-----DLDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMVDPNTGV 201 (274)
Q Consensus 140 ~l~LY~~~~cP~CrkVr~~L~e~-----gI~ye~~~v~~~~~~~~~e~~~inp~gkVPvLvd~n~G~ 201 (274)
.+..|+.++|+.|+...-.+.+. +..+....++.+ ..+++.+..+-..+|.++.-.+|.
T Consensus 19 ~lv~f~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~~---~~~~~~~~~~i~~~Pt~~~~~~g~ 82 (101)
T cd02994 19 WMIEFYAPWCPACQQLQPEWEEFADWSDDLGINVAKVDVT---QEPGLSGRFFVTALPTIYHAKDGV 82 (101)
T ss_pred EEEEEECCCCHHHHHHhHHHHHHHHhhccCCeEEEEEEcc---CCHhHHHHcCCcccCEEEEeCCCC
Confidence 47777889999999877555432 222333332211 123566666777899995322443
No 155
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=79.84 E-value=2.2 Score=31.13 Aligned_cols=54 Identities=13% Similarity=0.163 Sum_probs=35.3
Q ss_pred CCeEEEEcCCCccHHHHHHHHHH----c--CCCeEEEEcCCCCCCChhHHHhhCCCCceeEEE
Q 024010 139 KPIEIYEYESCPFCRKVREIVAV----L--DLDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMV 195 (274)
Q Consensus 139 ~~l~LY~~~~cP~CrkVr~~L~e----~--gI~ye~~~v~~~~~~~~~e~~~inp~gkVPvLv 195 (274)
.-+.+|+.++|++|++....+.+ . +-.+....+... ...++.+..+-..+|.++
T Consensus 17 ~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~---~~~~~~~~~~i~~~Pt~~ 76 (101)
T cd02961 17 DVLVEFYAPWCGHCKALAPEYEKLAKELKGDGKVVVAKVDCT---ANNDLCSEYGVRGYPTIK 76 (101)
T ss_pred cEEEEEECCCCHHHHhhhHHHHHHHHHhccCCceEEEEeecc---chHHHHHhCCCCCCCEEE
Confidence 55778888999999988776654 2 223444443221 245677777778999884
No 156
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=79.41 E-value=10 Score=28.37 Aligned_cols=60 Identities=17% Similarity=0.255 Sum_probs=34.3
Q ss_pred CCeEEEEcCCCccHHHHHHHHH----Hc----CCCeEEEEcCCCCCCChhHHHhhCCCCceeEEEEcCCCc
Q 024010 139 KPIEIYEYESCPFCRKVREIVA----VL----DLDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMVDPNTGV 201 (274)
Q Consensus 139 ~~l~LY~~~~cP~CrkVr~~L~----e~----gI~ye~~~v~~~~~~~~~e~~~inp~gkVPvLvd~n~G~ 201 (274)
.-+.+|+-++|++|++..-.+. .. .+.+-.+++.. + ..+++.+..+-..+|.++.-++|.
T Consensus 19 ~~~v~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~--~-~~~~~~~~~~i~~~Pt~~~~~~g~ 86 (104)
T cd02997 19 HVLVMFYAPWCGHCKKMKPEFTKAATELKEDGKGVLAAVDCTK--P-EHDALKEEYNVKGFPTFKYFENGK 86 (104)
T ss_pred CEEEEEECCCCHHHHHhCHHHHHHHHHHhhCCceEEEEEECCC--C-ccHHHHHhCCCccccEEEEEeCCC
Confidence 4467778899999998753332 21 12233334322 1 234566666677899885422454
No 157
>PF09635 MetRS-N: MetRS-N binding domain; InterPro: IPR018285 This entry represents the N-terminal domain of methionyl-tRNA synthetase (MetRS). This N-terminal appended domain mediates non-catalytic complex formation through its interaction with a domain in the tRNA aminoacylation cofactor Arc1p. The interacting domains of MetRS, GluRS (glutamyl-tRNA synthetase) and Arc1p form a ternary complex resembling a classical GST homo-dimer []. Domain-swapping between symmetrically related MetRS-N and Arc1p-N domains generates a 2:2 tetramer held together by van der Waals forces. This domain is necessary for formation of the aminoacyl-tRNA synthetase complex necessary for tRNA nuclear export and shuttling as part of the translational apparatus. ; PDB: 2HSN_A.
Probab=79.39 E-value=1.2 Score=36.95 Aligned_cols=30 Identities=23% Similarity=0.643 Sum_probs=15.1
Q ss_pred ceeEEEEcCCCceeeCHHHHHHHHhhhcCC
Q 024010 190 QFPYMVDPNTGVSMYESDNIIKYLVGKYGD 219 (274)
Q Consensus 190 kVPvLvd~n~G~~I~ES~aIi~YL~~~y~~ 219 (274)
.-|.|.+..+|+.++|..||++||..-|-.
T Consensus 35 ~~~~L~~~~~gF~L~e~NAIvrYl~nDF~~ 64 (122)
T PF09635_consen 35 SGPLLKDKKSGFELFEPNAIVRYLANDFEG 64 (122)
T ss_dssp -S--EEE-S--S----HHHHHHHHTT--TT
T ss_pred ccceeeecCCceEEecccHHHHHHHhhcCC
Confidence 347786666899999999999999988854
No 158
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=79.20 E-value=9.7 Score=29.44 Aligned_cols=60 Identities=10% Similarity=0.028 Sum_probs=35.6
Q ss_pred eEEEEcCCCccHHHHHHHHHH-----cCCCeEEEEcCCCCCCChhHHHhhCCCCceeEEEEcCCCce
Q 024010 141 IEIYEYESCPFCRKVREIVAV-----LDLDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMVDPNTGVS 202 (274)
Q Consensus 141 l~LY~~~~cP~CrkVr~~L~e-----~gI~ye~~~v~~~~~~~~~e~~~inp~gkVPvLvd~n~G~~ 202 (274)
+..|+-++|+.|+...-.|.. .++.|-.+++..+ ....++.+..+-..+|.++.-.+|..
T Consensus 19 vv~F~a~wC~~C~~~~p~l~~la~~~~~v~~~~vd~d~~--~~~~~l~~~~~V~~~Pt~~~~~~G~~ 83 (103)
T cd02985 19 VLEFALKHSGPSVKIYPTMVKLSRTCNDVVFLLVNGDEN--DSTMELCRREKIIEVPHFLFYKDGEK 83 (103)
T ss_pred EEEEECCCCHhHHHHhHHHHHHHHHCCCCEEEEEECCCC--hHHHHHHHHcCCCcCCEEEEEeCCeE
Confidence 555666999999987766654 2344444443221 11246777777778998853225543
No 159
>PHA02278 thioredoxin-like protein
Probab=79.02 E-value=10 Score=29.97 Aligned_cols=62 Identities=15% Similarity=0.285 Sum_probs=37.4
Q ss_pred eEEEEcCCCccHHHHHHHHHHc----C--CCeEEEEcCCCCCCChhHHHhhCCCCceeEEEEcCCCcee
Q 024010 141 IEIYEYESCPFCRKVREIVAVL----D--LDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMVDPNTGVSM 203 (274)
Q Consensus 141 l~LY~~~~cP~CrkVr~~L~e~----g--I~ye~~~v~~~~~~~~~e~~~inp~gkVPvLvd~n~G~~I 203 (274)
+.-|+-++|+.|+...-.+++. + +.+..+++..+.. ..+++.+...-..+|+++.=.+|..+
T Consensus 18 vV~F~A~WCgpCk~m~p~l~~l~~~~~~~~~~~~vdvd~~~~-d~~~l~~~~~I~~iPT~i~fk~G~~v 85 (103)
T PHA02278 18 IVMITQDNCGKCEILKSVIPMFQESGDIKKPILTLNLDAEDV-DREKAVKLFDIMSTPVLIGYKDGQLV 85 (103)
T ss_pred EEEEECCCCHHHHhHHHHHHHHHhhhcCCceEEEEECCcccc-ccHHHHHHCCCccccEEEEEECCEEE
Confidence 4555669999999877666442 2 3354455533211 13567777777899999532256543
No 160
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=78.83 E-value=3.5 Score=31.82 Aligned_cols=58 Identities=14% Similarity=0.081 Sum_probs=33.7
Q ss_pred CeEEEEcCCCccHHHHHHHHHHc----C-CCeEEEEcCCCCCCChhHHHhhCCCCceeEEEEcCCCc
Q 024010 140 PIEIYEYESCPFCRKVREIVAVL----D-LDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMVDPNTGV 201 (274)
Q Consensus 140 ~l~LY~~~~cP~CrkVr~~L~e~----g-I~ye~~~v~~~~~~~~~e~~~inp~gkVPvLvd~n~G~ 201 (274)
-+..|+-++|+.|+...-.+... + -.+....+..+ .++..+...-..+|.++.-.+|.
T Consensus 20 vvv~F~a~wC~~Ck~~~p~l~~~~~~~~~~~~~~~~vd~d----~~~~~~~~~v~~~Pt~~~~~~g~ 82 (102)
T cd02948 20 TVVDVYQEWCGPCKAVVSLFKKIKNELGDDLLHFATAEAD----TIDTLKRYRGKCEPTFLFYKNGE 82 (102)
T ss_pred EEEEEECCcCHhHHHHhHHHHHHHHHcCCCcEEEEEEeCC----CHHHHHHcCCCcCcEEEEEECCE
Confidence 35666779999999887666432 2 11223333221 23566677778899884322554
No 161
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=78.39 E-value=2 Score=33.13 Aligned_cols=21 Identities=19% Similarity=0.665 Sum_probs=15.5
Q ss_pred CeEEEEcCCCccHHHHHHHHH
Q 024010 140 PIEIYEYESCPFCRKVREIVA 160 (274)
Q Consensus 140 ~l~LY~~~~cP~CrkVr~~L~ 160 (274)
.+.+|+.++||+|++....+.
T Consensus 8 ~v~~F~~~~C~~C~~~~~~~~ 28 (112)
T PF13098_consen 8 IVVVFTDPWCPYCKKLEKELF 28 (112)
T ss_dssp EEEEEE-TT-HHHHHHHHHHH
T ss_pred EEEEEECCCCHHHHHHHHHHH
Confidence 467778899999999877766
No 162
>KOG2501 consensus Thioredoxin, nucleoredoxin and related proteins [General function prediction only]
Probab=77.23 E-value=7.6 Score=33.63 Aligned_cols=75 Identities=17% Similarity=0.207 Sum_probs=43.9
Q ss_pred CeEEEE-cCCCccHH-------HHHHHHHHcCCCeEEEEcCCCCCC-ChhHHHhhCCCCceeEEEEcCCCceeeCHHHHH
Q 024010 140 PIEIYE-YESCPFCR-------KVREIVAVLDLDVLYYPCPRNGPN-FRPKVLQMGGKKQFPYMVDPNTGVSMYESDNII 210 (274)
Q Consensus 140 ~l~LY~-~~~cP~Cr-------kVr~~L~e~gI~ye~~~v~~~~~~-~~~e~~~inp~gkVPvLvd~n~G~~I~ES~aIi 210 (274)
-+.||. ..+||.|| ++...++..+-+||++.|..+... .-.++....+. +=+.+| =-++++
T Consensus 35 vV~lyFsA~wC~pCR~FTP~Lk~fYe~l~~~~~~fEVvfVS~D~~~~~~~~y~~~~~~---~W~~iP-------f~d~~~ 104 (157)
T KOG2501|consen 35 VVGLYFSAHWCPPCRDFTPILKDFYEELKDNAAPFEVVFVSSDRDEESLDEYMLEHHG---DWLAIP-------FGDDLI 104 (157)
T ss_pred EEEEEEEEEECCchhhCCchHHHHHHHHHhcCCceEEEEEecCCCHHHHHHHHHhcCC---CeEEec-------CCCHHH
Confidence 356664 37999999 567777888889999998543321 12333332211 111111 114577
Q ss_pred HHHhhhcCCCCCCc
Q 024010 211 KYLVGKYGDGSVPF 224 (274)
Q Consensus 211 ~YL~~~y~~~~~P~ 224 (274)
+-|.++|.....|.
T Consensus 105 ~~l~~ky~v~~iP~ 118 (157)
T KOG2501|consen 105 QKLSEKYEVKGIPA 118 (157)
T ss_pred HHHHHhcccCcCce
Confidence 77777887766664
No 163
>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus. The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.
Probab=77.22 E-value=3.7 Score=31.54 Aligned_cols=55 Identities=11% Similarity=0.048 Sum_probs=32.0
Q ss_pred CCeEEEEcCCCccHHHHHHHHHH-------cCCCeEEEEcCCCCCCChhHHHhhCCCCceeEEEE
Q 024010 139 KPIEIYEYESCPFCRKVREIVAV-------LDLDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMVD 196 (274)
Q Consensus 139 ~~l~LY~~~~cP~CrkVr~~L~e-------~gI~ye~~~v~~~~~~~~~e~~~inp~gkVPvLvd 196 (274)
.-+..|+.++||.|++..-.+.+ .+..+....+... ..+++.+..+-..+|.++.
T Consensus 17 ~vlv~f~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~vd~~---~~~~~~~~~~I~~~Pt~~l 78 (104)
T cd03000 17 IWLVDFYAPWCGHCKKLEPVWNEVGAELKSSGSPVRVGKLDAT---AYSSIASEFGVRGYPTIKL 78 (104)
T ss_pred eEEEEEECCCCHHHHhhChHHHHHHHHHHhcCCcEEEEEEECc---cCHhHHhhcCCccccEEEE
Confidence 34666777999999976644432 1333333333211 1345666666778999953
No 164
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=76.46 E-value=11 Score=31.00 Aligned_cols=66 Identities=17% Similarity=0.369 Sum_probs=36.8
Q ss_pred eEEEEcCCCccHHHHHH-------HHHHcCCCeEEEEcCCCC-CCChhHHH----hhCCCCceeEEE-EcCCCceeeCH
Q 024010 141 IEIYEYESCPFCRKVRE-------IVAVLDLDVLYYPCPRNG-PNFRPKVL----QMGGKKQFPYMV-DPNTGVSMYES 206 (274)
Q Consensus 141 l~LY~~~~cP~CrkVr~-------~L~e~gI~ye~~~v~~~~-~~~~~e~~----~inp~gkVPvLv-d~n~G~~I~ES 206 (274)
+..|+..+|++|++... +....+-.|..+.++.+. +.....+. .+++...+|.++ ...+|..++.+
T Consensus 19 ll~f~a~WC~~Ck~me~~~f~~~~V~~~l~~~fv~VkvD~~~~~~~~~~~~~~~~~~~~~~G~Pt~vfl~~~G~~~~~~ 97 (124)
T cd02955 19 FLSIGYSTCHWCHVMEHESFEDEEVAAILNENFVPIKVDREERPDVDKIYMNAAQAMTGQGGWPLNVFLTPDLKPFFGG 97 (124)
T ss_pred EEEEccCCCHhHHHHHHHccCCHHHHHHHhCCEEEEEEeCCcCcHHHHHHHHHHHHhcCCCCCCEEEEECCCCCEEeee
Confidence 34456689999998743 223333356666654321 11111122 245677899985 33377777765
No 165
>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins. Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.
Probab=76.41 E-value=3.3 Score=30.03 Aligned_cols=33 Identities=27% Similarity=0.540 Sum_probs=24.7
Q ss_pred eEEEEcCCCccHHHHHHHHHHc------CCCeEEEEcCC
Q 024010 141 IEIYEYESCPFCRKVREIVAVL------DLDVLYYPCPR 173 (274)
Q Consensus 141 l~LY~~~~cP~CrkVr~~L~e~------gI~ye~~~v~~ 173 (274)
|.+|....||+|......+.+. ++.++.+++..
T Consensus 1 i~~f~d~~Cp~C~~~~~~l~~~~~~~~~~~~~~~~~~~~ 39 (98)
T cd02972 1 IVEFFDPLCPYCYLFEPELEKLLYADDGGVRVVYRPFPL 39 (98)
T ss_pred CeEEECCCCHhHHhhhHHHHHHHhhcCCcEEEEEecccc
Confidence 4678889999999988888764 45566666643
No 166
>COG3019 Predicted metal-binding protein [General function prediction only]
Probab=75.31 E-value=7.8 Score=33.15 Aligned_cols=73 Identities=12% Similarity=0.128 Sum_probs=49.4
Q ss_pred CCCeEEEEcCCCccHHHHHHHHHHcCCCeEEEEcCCCCCCChhHHHhhC----CCCceeEEEEcCCCceeeC---HHHHH
Q 024010 138 EKPIEIYEYESCPFCRKVREIVAVLDLDVLYYPCPRNGPNFRPKVLQMG----GKKQFPYMVDPNTGVSMYE---SDNII 210 (274)
Q Consensus 138 ~~~l~LY~~~~cP~CrkVr~~L~e~gI~ye~~~v~~~~~~~~~e~~~in----p~gkVPvLvd~n~G~~I~E---S~aIi 210 (274)
..++.+|..+.|..|..--..|+.+|+.+..+.... ...+++.- -.+.-=..++ +|..+-+ ..+|.
T Consensus 25 ~~~~~vyksPnCGCC~~w~~~mk~~Gf~Vk~~~~~d-----~~alK~~~gIp~e~~SCHT~VI--~Gy~vEGHVPa~aI~ 97 (149)
T COG3019 25 ATEMVVYKSPNCGCCDEWAQHMKANGFEVKVVETDD-----FLALKRRLGIPYEMQSCHTAVI--NGYYVEGHVPAEAIA 97 (149)
T ss_pred eeeEEEEeCCCCccHHHHHHHHHhCCcEEEEeecCc-----HHHHHHhcCCChhhccccEEEE--cCEEEeccCCHHHHH
Confidence 456899999999999999999999998877765321 12233211 1112223455 6665533 68999
Q ss_pred HHHhhhc
Q 024010 211 KYLVGKY 217 (274)
Q Consensus 211 ~YL~~~y 217 (274)
+.|+++.
T Consensus 98 ~ll~~~p 104 (149)
T COG3019 98 RLLAEKP 104 (149)
T ss_pred HHHhCCC
Confidence 9999988
No 167
>PTZ00443 Thioredoxin domain-containing protein; Provisional
Probab=73.93 E-value=7.9 Score=35.12 Aligned_cols=77 Identities=13% Similarity=0.157 Sum_probs=46.7
Q ss_pred CeEEEEcCCCccHHHHHHHHHHc----CCCeEEEEcCCCCCCChhHHHhhCCCCceeEEEEcCCCcee------eCHHHH
Q 024010 140 PIEIYEYESCPFCRKVREIVAVL----DLDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMVDPNTGVSM------YESDNI 209 (274)
Q Consensus 140 ~l~LY~~~~cP~CrkVr~~L~e~----gI~ye~~~v~~~~~~~~~e~~~inp~gkVPvLvd~n~G~~I------~ES~aI 209 (274)
-+..|+-++|+.|+...-.+.+. +-.+....++. ...+++.+..+-..+|.++.=++|..+ ....+|
T Consensus 55 vlV~FyApWC~~Ck~~~P~~e~la~~~~~~v~~~~VD~---~~~~~l~~~~~I~~~PTl~~f~~G~~v~~~~G~~s~e~L 131 (224)
T PTZ00443 55 WFVKFYAPWCSHCRKMAPAWERLAKALKGQVNVADLDA---TRALNLAKRFAIKGYPTLLLFDKGKMYQYEGGDRSTEKL 131 (224)
T ss_pred EEEEEECCCChHHHHHHHHHHHHHHHcCCCeEEEEecC---cccHHHHHHcCCCcCCEEEEEECCEEEEeeCCCCCHHHH
Confidence 35667779999999776655432 21233333322 123467777777889988421155433 246888
Q ss_pred HHHHhhhcCC
Q 024010 210 IKYLVGKYGD 219 (274)
Q Consensus 210 i~YL~~~y~~ 219 (274)
.+|+.+.|..
T Consensus 132 ~~fi~~~~~~ 141 (224)
T PTZ00443 132 AAFALGDFKK 141 (224)
T ss_pred HHHHHHHHHh
Confidence 9999888753
No 168
>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1. TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.
Probab=73.69 E-value=14 Score=30.29 Aligned_cols=60 Identities=17% Similarity=0.167 Sum_probs=32.5
Q ss_pred CCCccHHHHHHHHH----Hc--CCCeEEEEcCCCCC--CChhHHHhhCCCC-ceeEEEEcCCCceeeCH
Q 024010 147 ESCPFCRKVREIVA----VL--DLDVLYYPCPRNGP--NFRPKVLQMGGKK-QFPYMVDPNTGVSMYES 206 (274)
Q Consensus 147 ~~cP~CrkVr~~L~----e~--gI~ye~~~v~~~~~--~~~~e~~~inp~g-kVPvLvd~n~G~~I~ES 206 (274)
.||+.|+.+.-.++ +. ++.|-.+++..... ....++.....-. .+|.++.=++|..+.|.
T Consensus 38 ~WC~pCr~~~P~l~~l~~~~~~~v~fv~Vdvd~~~~w~d~~~~~~~~~~I~~~iPT~~~~~~~~~l~~~ 106 (119)
T cd02952 38 SWCPDCVKAEPVVREALKAAPEDCVFIYCDVGDRPYWRDPNNPFRTDPKLTTGVPTLLRWKTPQRLVED 106 (119)
T ss_pred CCCHhHHhhchhHHHHHHHCCCCCEEEEEEcCCcccccCcchhhHhccCcccCCCEEEEEcCCceecch
Confidence 79999997765443 33 34555555532110 1124566544444 89999532255555443
No 169
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=72.51 E-value=4.6 Score=30.22 Aligned_cols=58 Identities=12% Similarity=0.128 Sum_probs=34.9
Q ss_pred eEEEEcCCCccHHHHHHHHHHcC----CCeEEEEcCCCCCCChhHHHhhCCCCceeEEEEcCCCc
Q 024010 141 IEIYEYESCPFCRKVREIVAVLD----LDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMVDPNTGV 201 (274)
Q Consensus 141 l~LY~~~~cP~CrkVr~~L~e~g----I~ye~~~v~~~~~~~~~e~~~inp~gkVPvLvd~n~G~ 201 (274)
+..|+.++|+.|++..-.+.+.- -.+....++. ...+++.+..+-..+|+++.=++|.
T Consensus 16 lv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~---~~~~~l~~~~~i~~~Pt~~~~~~g~ 77 (96)
T cd02956 16 VVDFWAPRSPPSKELLPLLERLAEEYQGQFVLAKVNC---DAQPQIAQQFGVQALPTVYLFAAGQ 77 (96)
T ss_pred EEEEECCCChHHHHHHHHHHHHHHHhCCcEEEEEEec---cCCHHHHHHcCCCCCCEEEEEeCCE
Confidence 45556699999998876665422 1233333322 1234677777778899996322554
No 170
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=72.39 E-value=4.6 Score=32.96 Aligned_cols=57 Identities=12% Similarity=0.069 Sum_probs=35.9
Q ss_pred eEEEEcCCCccHHHHHHHHHHcCC------CeEEEEcCCCCCCChhHHHhhCCCCceeEEEEcCCCce
Q 024010 141 IEIYEYESCPFCRKVREIVAVLDL------DVLYYPCPRNGPNFRPKVLQMGGKKQFPYMVDPNTGVS 202 (274)
Q Consensus 141 l~LY~~~~cP~CrkVr~~L~e~gI------~ye~~~v~~~~~~~~~e~~~inp~gkVPvLvd~n~G~~ 202 (274)
+.-|+-+||+.|+...-.|++.-- .|-.+++. ..+++.+..+-..+|.++.=.+|..
T Consensus 18 VV~F~A~WCgpCk~m~P~le~la~~~~~~v~f~kVDvD-----~~~~la~~~~V~~iPTf~~fk~G~~ 80 (114)
T cd02954 18 VIRFGRDWDPVCMQMDEVLAKIAEDVSNFAVIYLVDID-----EVPDFNKMYELYDPPTVMFFFRNKH 80 (114)
T ss_pred EEEEECCCChhHHHHHHHHHHHHHHccCceEEEEEECC-----CCHHHHHHcCCCCCCEEEEEECCEE
Confidence 455677999999988777754322 23333332 2357888888888999953115543
No 171
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=72.21 E-value=4.2 Score=31.99 Aligned_cols=57 Identities=9% Similarity=0.133 Sum_probs=35.1
Q ss_pred eEEEEcCCCccHHHHHHHHHH-----cCCCeEEEEcCCCCCCChhHHHhhCCCCceeEEEEcCCCcee
Q 024010 141 IEIYEYESCPFCRKVREIVAV-----LDLDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMVDPNTGVSM 203 (274)
Q Consensus 141 l~LY~~~~cP~CrkVr~~L~e-----~gI~ye~~~v~~~~~~~~~e~~~inp~gkVPvLvd~n~G~~I 203 (274)
+..|+.++|+.|+...-.+++ .++.|-.+++.. . ++.+..+-..+|.++.=.+|..+
T Consensus 28 vv~F~a~~c~~C~~l~~~l~~la~~~~~v~f~~vd~~~-----~-~l~~~~~i~~~Pt~~~f~~G~~v 89 (113)
T cd02957 28 VVHFYEPGFPRCKILDSHLEELAAKYPETKFVKINAEK-----A-FLVNYLDIKVLPTLLVYKNGELI 89 (113)
T ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEEchh-----h-HHHHhcCCCcCCEEEEEECCEEE
Confidence 456677999999988777654 234333333321 2 56666677799999532256544
No 172
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=71.19 E-value=3.5 Score=32.01 Aligned_cols=52 Identities=19% Similarity=0.347 Sum_probs=32.2
Q ss_pred CeEEEEcCCCccHHHHHHHHHH-----cCCCeEEEEcCCCCCCChhHHHhhCCCCceeEEE
Q 024010 140 PIEIYEYESCPFCRKVREIVAV-----LDLDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMV 195 (274)
Q Consensus 140 ~l~LY~~~~cP~CrkVr~~L~e-----~gI~ye~~~v~~~~~~~~~e~~~inp~gkVPvLv 195 (274)
-+..|+-++|++|++..-.+++ .++.+-.++.. ...+++.+..+-..+|.++
T Consensus 21 vlV~F~a~WC~~C~~~~p~l~~la~~~~~~~~~~vd~~----~~~~~l~~~~~V~~~PT~~ 77 (100)
T cd02999 21 TAVLFYASWCPFSASFRPHFNALSSMFPQIRHLAIEES----SIKPSLLSRYGVVGFPTIL 77 (100)
T ss_pred EEEEEECCCCHHHHhHhHHHHHHHHHhccCceEEEECC----CCCHHHHHhcCCeecCEEE
Confidence 3666777999999988766643 33333333221 1234566666777899884
No 173
>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.
Probab=69.97 E-value=1.5 Score=36.28 Aligned_cols=57 Identities=16% Similarity=0.222 Sum_probs=28.5
Q ss_pred CCCeEEEEcCCCccHHHHH----HHHHHc-CCCeEEEEcCCCCCCChhHHHhhCCCCceeEEEE
Q 024010 138 EKPIEIYEYESCPFCRKVR----EIVAVL-DLDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMVD 196 (274)
Q Consensus 138 ~~~l~LY~~~~cP~CrkVr----~~L~e~-gI~ye~~~v~~~~~~~~~e~~~inp~gkVPvLvd 196 (274)
...+.++.-.|||.|++.- .+++.. +|++..+..+.+ ......|+. ++...||.++.
T Consensus 42 ~~~ilvi~e~WCgD~~~~vP~l~kiae~~p~i~~~~i~rd~~-~el~~~~lt-~g~~~IP~~I~ 103 (129)
T PF14595_consen 42 PYNILVITETWCGDCARNVPVLAKIAEANPNIEVRIILRDEN-KELMDQYLT-NGGRSIPTFIF 103 (129)
T ss_dssp -EEEEEE--TT-HHHHHHHHHHHHHHHH-TTEEEEEE-HHHH-HHHTTTTTT--SS--SSEEEE
T ss_pred CcEEEEEECCCchhHHHHHHHHHHHHHhCCCCeEEEEEecCC-hhHHHHHHh-CCCeecCEEEE
Confidence 3467888889999999644 444455 566655543211 111233444 78889999964
No 174
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.
Probab=69.74 E-value=7 Score=31.24 Aligned_cols=35 Identities=23% Similarity=0.450 Sum_probs=24.5
Q ss_pred CCeEEEEcCCCccHHHHHHHHHHc-----CCCeEEEEcCC
Q 024010 139 KPIEIYEYESCPFCRKVREIVAVL-----DLDVLYYPCPR 173 (274)
Q Consensus 139 ~~l~LY~~~~cP~CrkVr~~L~e~-----gI~ye~~~v~~ 173 (274)
..|.+|....||+|++....++.. ++.+..++++.
T Consensus 7 ~~i~~f~D~~Cp~C~~~~~~l~~~~~~~~~~~~~~~~~p~ 46 (154)
T cd03023 7 VTIVEFFDYNCGYCKKLAPELEKLLKEDPDVRVVFKEFPI 46 (154)
T ss_pred EEEEEEECCCChhHHHhhHHHHHHHHHCCCceEEEEeCCc
Confidence 457788889999999987766542 24566666543
No 175
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=69.68 E-value=16 Score=28.40 Aligned_cols=54 Identities=15% Similarity=0.333 Sum_probs=32.2
Q ss_pred CCCeEEEEcCCCccHHHHHHHHHH-----c--CCCeEEEEcCCCCCCChhHHH-hhCCCCceeEEE
Q 024010 138 EKPIEIYEYESCPFCRKVREIVAV-----L--DLDVLYYPCPRNGPNFRPKVL-QMGGKKQFPYMV 195 (274)
Q Consensus 138 ~~~l~LY~~~~cP~CrkVr~~L~e-----~--gI~ye~~~v~~~~~~~~~e~~-~inp~gkVPvLv 195 (274)
..-+..|+.++|+.|++..-.+.+ . ++.+-.+++... ...+. +..+-..+|.++
T Consensus 22 k~vlv~f~a~wC~~C~~~~~~~~~la~~~~~~~~~~~~vd~d~~----~~~~~~~~~~v~~~Pti~ 83 (109)
T cd02993 22 QSTLVVLYAPWCPFCQAMEASYEELAEKLAGSNVKVAKFNADGE----QREFAKEELQLKSFPTIL 83 (109)
T ss_pred CCEEEEEECCCCHHHHHHhHHHHHHHHHhccCCeEEEEEECCcc----chhhHHhhcCCCcCCEEE
Confidence 345777888999999987655543 2 233333443221 12333 346777899884
No 176
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=68.88 E-value=25 Score=36.12 Aligned_cols=74 Identities=12% Similarity=0.125 Sum_probs=42.0
Q ss_pred eEEEEcCCCccHHHHHHHH-------H-HcCCCeEEEEcCCCCCCChhHHHhhCCCCceeEEEE-cCCCcee--------
Q 024010 141 IEIYEYESCPFCRKVREIV-------A-VLDLDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMVD-PNTGVSM-------- 203 (274)
Q Consensus 141 l~LY~~~~cP~CrkVr~~L-------~-e~gI~ye~~~v~~~~~~~~~e~~~inp~gkVPvLvd-~n~G~~I-------- 203 (274)
+.-|+-++|+.|++..... + ..++.+-.+++..+++ ...++.+..+-..+|.++. +.+|..+
T Consensus 478 lVdF~A~WC~~Ck~~e~~~~~~~~v~~~l~~~~~v~vDvt~~~~-~~~~l~~~~~v~g~Pt~~~~~~~G~~i~~~r~~G~ 556 (571)
T PRK00293 478 MLDLYADWCVACKEFEKYTFSDPQVQQALADTVLLQADVTANNA-EDVALLKHYNVLGLPTILFFDAQGQEIPDARVTGF 556 (571)
T ss_pred EEEEECCcCHhHHHHHHHhcCCHHHHHHhcCCEEEEEECCCCCh-hhHHHHHHcCCCCCCEEEEECCCCCCcccccccCC
Confidence 4455669999999764321 1 2344444445543322 2456777777778999842 2245432
Q ss_pred eCHHHHHHHHhh
Q 024010 204 YESDNIIKYLVG 215 (274)
Q Consensus 204 ~ES~aIi~YL~~ 215 (274)
.+..++.++|++
T Consensus 557 ~~~~~f~~~L~~ 568 (571)
T PRK00293 557 MDAAAFAAHLRQ 568 (571)
T ss_pred CCHHHHHHHHHH
Confidence 245566776664
No 177
>PRK03147 thiol-disulfide oxidoreductase; Provisional
Probab=68.28 E-value=49 Score=27.23 Aligned_cols=20 Identities=15% Similarity=0.102 Sum_probs=13.5
Q ss_pred CeEEEEcCCCccHHHHHHHH
Q 024010 140 PIEIYEYESCPFCRKVREIV 159 (274)
Q Consensus 140 ~l~LY~~~~cP~CrkVr~~L 159 (274)
.+..|...+||+|++..-.+
T Consensus 64 ~~l~f~a~~C~~C~~~~~~l 83 (173)
T PRK03147 64 VFLNFWGTWCKPCEKEMPYM 83 (173)
T ss_pred EEEEEECCcCHHHHHHHHHH
Confidence 34555678999999754333
No 178
>PF13728 TraF: F plasmid transfer operon protein
Probab=67.48 E-value=29 Score=31.07 Aligned_cols=112 Identities=13% Similarity=0.186 Sum_probs=60.3
Q ss_pred hhhhcccchhhccCCcceeccCCCCCCcc-ccccccCccccccccC------CC--CCCCCeEEEEcCCCccHHH----H
Q 024010 89 ALFFRFGTGVFVSGYSASFVSKDEIPPDQ-YTLEIAGFKVKETSKL------GP--RPEKPIEIYEYESCPFCRK----V 155 (274)
Q Consensus 89 ~~~~r~g~G~~~~g~~~~lv~~~~~~~~~-yal~~~g~r~~r~s~l------~~--~~~~~l~LY~~~~cP~Crk----V 155 (274)
..++.+=...|..-|...+....++.+.. +...-++++.+....- .. ...-.+.+|....||+|.+ +
T Consensus 63 q~~~~dka~~Fa~~~~~v~l~~P~Ld~~~~~P~~~~a~~~~~~~~~~~~~~~l~~la~~~gL~~F~~~~C~~C~~~~pil 142 (215)
T PF13728_consen 63 QRFAMDKASRFADTWQRVLLQNPELDYTLRRPVSNFARQAYLRQREQKRDKALKQLAQKYGLFFFYRSDCPYCQQQAPIL 142 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCccccCCchHHHHHHHHHHHHHHHHHHHHHHhhCeEEEEEEcCCCchhHHHHHHH
Confidence 44566677788887777666555552111 1112333333332111 01 2223467777789999985 4
Q ss_pred HHHHHHcCCCeEEEEcCCC-CCC-----ChhHHHhhCCCCceeEEE--EcCCC
Q 024010 156 REIVAVLDLDVLYYPCPRN-GPN-----FRPKVLQMGGKKQFPYMV--DPNTG 200 (274)
Q Consensus 156 r~~L~e~gI~ye~~~v~~~-~~~-----~~~e~~~inp~gkVPvLv--d~n~G 200 (274)
+.+.++.|+.+..+.++.. .+. ......+..+-..+|+|+ +++++
T Consensus 143 ~~~~~~yg~~v~~vs~DG~~~~~fp~~~~~~g~~~~l~v~~~Pal~Lv~~~~~ 195 (215)
T PF13728_consen 143 QQFADKYGFSVIPVSLDGRPIPSFPNPRPDPGQAKRLGVKVTPALFLVNPNTK 195 (215)
T ss_pred HHHHHHhCCEEEEEecCCCCCcCCCCCCCCHHHHHHcCCCcCCEEEEEECCCC
Confidence 5555678888777776311 111 123344444556999995 45443
No 179
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=67.21 E-value=8 Score=29.35 Aligned_cols=51 Identities=10% Similarity=0.226 Sum_probs=31.1
Q ss_pred CeEEEEcCCCccHHHHHHHHHHc-----C-CCeEEEEcCCCCCCChhHHHhhCCCCceeEEE
Q 024010 140 PIEIYEYESCPFCRKVREIVAVL-----D-LDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMV 195 (274)
Q Consensus 140 ~l~LY~~~~cP~CrkVr~~L~e~-----g-I~ye~~~v~~~~~~~~~e~~~inp~gkVPvLv 195 (274)
-+..|+.++|+.|+...-.+.+. | +.+-.+++.. .+++.+..+-..+|.++
T Consensus 21 ~~v~f~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~vd~~~-----~~~~~~~~~v~~~Pt~~ 77 (101)
T cd03003 21 WFVNFYSPRCSHCHDLAPTWREFAKEMDGVIRIGAVNCGD-----DRMLCRSQGVNSYPSLY 77 (101)
T ss_pred EEEEEECCCChHHHHhHHHHHHHHHHhcCceEEEEEeCCc-----cHHHHHHcCCCccCEEE
Confidence 46667779999999776655432 2 2223333321 24566666667899884
No 180
>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []. The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....
Probab=66.61 E-value=8.1 Score=32.51 Aligned_cols=34 Identities=26% Similarity=0.570 Sum_probs=26.3
Q ss_pred CeEEEEcCCCccHHHHH----HHHHHc-CCCeEEEEcCC
Q 024010 140 PIEIYEYESCPFCRKVR----EIVAVL-DLDVLYYPCPR 173 (274)
Q Consensus 140 ~l~LY~~~~cP~CrkVr----~~L~e~-gI~ye~~~v~~ 173 (274)
+|++|....||||.... .++++. ++.++.+++..
T Consensus 1 ~i~~~~D~~Cp~cy~~~~~l~~l~~~~~~~~i~~~p~~l 39 (193)
T PF01323_consen 1 TIEFFFDFICPWCYLASPRLRKLRAEYPDVEIEWRPFPL 39 (193)
T ss_dssp EEEEEEBTTBHHHHHHHHHHHHHHHHHTTCEEEEEEESS
T ss_pred CEEEEEeCCCHHHHHHHHHHHHHHHHhcCCcEEEecccc
Confidence 37899999999998554 444555 89999998853
No 181
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=65.87 E-value=25 Score=26.62 Aligned_cols=53 Identities=17% Similarity=0.279 Sum_probs=32.0
Q ss_pred CeEEEEcCCCccHHHHHHHHHHc----C--CCeEEEEcCCCCCCChhHHHhhCCCCceeEEE
Q 024010 140 PIEIYEYESCPFCRKVREIVAVL----D--LDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMV 195 (274)
Q Consensus 140 ~l~LY~~~~cP~CrkVr~~L~e~----g--I~ye~~~v~~~~~~~~~e~~~inp~gkVPvLv 195 (274)
.+..|+.++|+.|+...-.+.+. + +.+-.+++.. + ...++.+..+-..+|.++
T Consensus 21 ~lv~f~a~wC~~C~~~~~~~~~~a~~~~~~~~~~~v~~~~--~-~~~~~~~~~~i~~~Pt~~ 79 (109)
T cd03002 21 TLVEFYAPWCGHCKNLKPEYAKAAKELDGLVQVAAVDCDE--D-KNKPLCGKYGVQGFPTLK 79 (109)
T ss_pred EEEEEECCCCHHHHhhChHHHHHHHHhcCCceEEEEecCc--c-ccHHHHHHcCCCcCCEEE
Confidence 46777779999999775544432 2 2233333322 1 134566666777899885
No 182
>PRK13728 conjugal transfer protein TrbB; Provisional
Probab=65.38 E-value=16 Score=32.31 Aligned_cols=31 Identities=16% Similarity=0.602 Sum_probs=20.2
Q ss_pred eEEEEcCCCccHHHHHHHH----HHcCCCeEEEEc
Q 024010 141 IEIYEYESCPFCRKVREIV----AVLDLDVLYYPC 171 (274)
Q Consensus 141 l~LY~~~~cP~CrkVr~~L----~e~gI~ye~~~v 171 (274)
+..|...+||+|++..-.| ++.|+.+.-+.+
T Consensus 73 lV~FwaswCp~C~~e~P~L~~l~~~~g~~Vi~Vs~ 107 (181)
T PRK13728 73 VVLFMQGHCPYCHQFDPVLKQLAQQYGFSVFPYTL 107 (181)
T ss_pred EEEEECCCCHhHHHHHHHHHHHHHHcCCEEEEEEe
Confidence 6677889999999875433 444654444443
No 183
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=65.19 E-value=6.1 Score=30.05 Aligned_cols=51 Identities=12% Similarity=0.135 Sum_probs=32.2
Q ss_pred CeEEEEcCCCccHHHHHHHHHHc------CCCeEEEEcCCCCCCChhHHHhhCCCCceeEEE
Q 024010 140 PIEIYEYESCPFCRKVREIVAVL------DLDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMV 195 (274)
Q Consensus 140 ~l~LY~~~~cP~CrkVr~~L~e~------gI~ye~~~v~~~~~~~~~e~~~inp~gkVPvLv 195 (274)
-+..|+.++|+.|++..-.+++. ++.+-.+++. ..+++.+..+-..+|.++
T Consensus 22 v~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~-----~~~~~~~~~~i~~~Pt~~ 78 (104)
T cd03004 22 WLVDFYAPWCGPCQALLPELRKAARALKGKVKVGSVDCQ-----KYESLCQQANIRAYPTIR 78 (104)
T ss_pred EEEEEECCCCHHHHHHHHHHHHHHHHhcCCcEEEEEECC-----chHHHHHHcCCCcccEEE
Confidence 46667779999999876555432 2333334432 234566666778899885
No 184
>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif. TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the
Probab=65.11 E-value=18 Score=28.65 Aligned_cols=20 Identities=20% Similarity=0.373 Sum_probs=13.6
Q ss_pred eEEEEcCCCccHHHHHHHHH
Q 024010 141 IEIYEYESCPFCRKVREIVA 160 (274)
Q Consensus 141 l~LY~~~~cP~CrkVr~~L~ 160 (274)
+..|...+|+.|++..-.|.
T Consensus 22 ll~Fwa~wC~~C~~~~p~l~ 41 (131)
T cd03009 22 GLYFSASWCPPCRAFTPKLV 41 (131)
T ss_pred EEEEECCCChHHHHHhHHHH
Confidence 44445589999997655543
No 185
>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD. This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.
Probab=64.24 E-value=29 Score=29.98 Aligned_cols=29 Identities=28% Similarity=0.608 Sum_probs=17.9
Q ss_pred eEEEEcCCCccHHHHHHHH----HHcCCCeEEE
Q 024010 141 IEIYEYESCPFCRKVREIV----AVLDLDVLYY 169 (274)
Q Consensus 141 l~LY~~~~cP~CrkVr~~L----~e~gI~ye~~ 169 (274)
+..|...+||.|++..-.+ ++.|+++..+
T Consensus 78 vl~F~atwCp~C~~~lp~l~~~~~~~~~~vv~I 110 (189)
T TIGR02661 78 LLMFTAPSCPVCDKLFPIIKSIARAEETDVVMI 110 (189)
T ss_pred EEEEECCCChhHHHHHHHHHHHHHhcCCcEEEE
Confidence 5556678999999764444 3345544433
No 186
>PTZ00102 disulphide isomerase; Provisional
Probab=64.06 E-value=38 Score=32.90 Aligned_cols=78 Identities=12% Similarity=0.146 Sum_probs=46.9
Q ss_pred CCCeEEEEcCCCccHHHHHHHH-------HHcC--CCeEEEEcCCCCCCChhHHHhhCCCCceeEEE-EcCCCcee----
Q 024010 138 EKPIEIYEYESCPFCRKVREIV-------AVLD--LDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMV-DPNTGVSM---- 203 (274)
Q Consensus 138 ~~~l~LY~~~~cP~CrkVr~~L-------~e~g--I~ye~~~v~~~~~~~~~e~~~inp~gkVPvLv-d~n~G~~I---- 203 (274)
..-+..|+.+||++|++..-.+ +..+ +.+-.++|.. ..++.+..+-..+|.++ ..+++.+-
T Consensus 50 ~~~lv~f~a~wC~~Ck~~~p~~~~~a~~~~~~~~~i~~~~vd~~~-----~~~l~~~~~i~~~Pt~~~~~~g~~~~y~g~ 124 (477)
T PTZ00102 50 EIVLVKFYAPWCGHCKRLAPEYKKAAKMLKEKKSEIVLASVDATE-----EMELAQEFGVRGYPTIKFFNKGNPVNYSGG 124 (477)
T ss_pred CcEEEEEECCCCHHHHHhhHHHHHHHHHHHhcCCcEEEEEEECCC-----CHHHHHhcCCCcccEEEEEECCceEEecCC
Confidence 3457788889999999765322 2233 3334444322 23566666667899884 33233221
Q ss_pred eCHHHHHHHHhhhcCCC
Q 024010 204 YESDNIIKYLVGKYGDG 220 (274)
Q Consensus 204 ~ES~aIi~YL~~~y~~~ 220 (274)
.....|++|+.+..+..
T Consensus 125 ~~~~~l~~~l~~~~~~~ 141 (477)
T PTZ00102 125 RTADGIVSWIKKLTGPA 141 (477)
T ss_pred CCHHHHHHHHHHhhCCC
Confidence 24688999999876643
No 187
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=63.64 E-value=6.3 Score=29.45 Aligned_cols=54 Identities=13% Similarity=0.199 Sum_probs=31.9
Q ss_pred CeEEEEcCCCccHHHHHHHHHH----cC--CCeEEEEcCCCCCCChhHHHhhCCCCceeEEE
Q 024010 140 PIEIYEYESCPFCRKVREIVAV----LD--LDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMV 195 (274)
Q Consensus 140 ~l~LY~~~~cP~CrkVr~~L~e----~g--I~ye~~~v~~~~~~~~~e~~~inp~gkVPvLv 195 (274)
-+..|+.++|+.|+.....+.+ .. -.+....++...+ .+++.+..+-..+|.++
T Consensus 21 ~~v~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~--~~~~~~~~~i~~~P~~~ 80 (105)
T cd02998 21 VLVEFYAPWCGHCKNLAPEYEKLAAVFANEDDVVIAKVDADEA--NKDLAKKYGVSGFPTLK 80 (105)
T ss_pred EEEEEECCCCHHHHhhChHHHHHHHHhCCCCCEEEEEEECCCc--chhhHHhCCCCCcCEEE
Confidence 4677788999999966555433 22 2244433322110 24566666667899885
No 188
>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily. Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.
Probab=63.40 E-value=30 Score=29.27 Aligned_cols=29 Identities=17% Similarity=0.162 Sum_probs=17.6
Q ss_pred eEEEEcCCCccHHHHHHHHHH---cCCCeEEE
Q 024010 141 IEIYEYESCPFCRKVREIVAV---LDLDVLYY 169 (274)
Q Consensus 141 l~LY~~~~cP~CrkVr~~L~e---~gI~ye~~ 169 (274)
+..|...+||.|++..-.+.+ +|+.+-.+
T Consensus 67 ll~F~a~wC~~C~~~~p~l~~l~~~~~~vi~V 98 (173)
T TIGR00385 67 LLNVWASWCPPCRAEHPYLNELAKDGLPIVGV 98 (173)
T ss_pred EEEEECCcCHHHHHHHHHHHHHHHcCCEEEEE
Confidence 444556899999986555543 45444333
No 189
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=62.30 E-value=6.9 Score=29.31 Aligned_cols=53 Identities=8% Similarity=0.081 Sum_probs=30.2
Q ss_pred CeEEEEcCCCccHHHHHHHHHH-----cC--CCeEEEEcCCCCCCChhHHHhhCCCCceeEEE
Q 024010 140 PIEIYEYESCPFCRKVREIVAV-----LD--LDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMV 195 (274)
Q Consensus 140 ~l~LY~~~~cP~CrkVr~~L~e-----~g--I~ye~~~v~~~~~~~~~e~~~inp~gkVPvLv 195 (274)
.+..|+.++|+.|++..-.+.+ .+ -.+....++.+ ...++.+..+-..+|.++
T Consensus 19 ~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~---~~~~~~~~~~v~~~Pt~~ 78 (102)
T cd03005 19 HFVKFFAPWCGHCKRLAPTWEQLAKKFNNENPSVKIAKVDCT---QHRELCSEFQVRGYPTLL 78 (102)
T ss_pred EEEEEECCCCHHHHHhCHHHHHHHHHHhccCCcEEEEEEECC---CChhhHhhcCCCcCCEEE
Confidence 5667777999999976544432 22 12333333221 123455555667899884
No 190
>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif. The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.
Probab=62.29 E-value=21 Score=27.67 Aligned_cols=22 Identities=23% Similarity=0.395 Sum_probs=15.3
Q ss_pred CeEEEEcCCCccHHHHHHHHHH
Q 024010 140 PIEIYEYESCPFCRKVREIVAV 161 (274)
Q Consensus 140 ~l~LY~~~~cP~CrkVr~~L~e 161 (274)
.+..|...+|+.|+...-.|..
T Consensus 23 ~vl~F~~~~C~~C~~~~~~l~~ 44 (123)
T cd03011 23 VLVYFWATWCPVCRFTSPTVNQ 44 (123)
T ss_pred EEEEEECCcChhhhhhChHHHH
Confidence 3556667899999977555543
No 191
>TIGR02740 TraF-like TraF-like protein. This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.
Probab=61.62 E-value=32 Score=31.93 Aligned_cols=106 Identities=9% Similarity=0.123 Sum_probs=52.0
Q ss_pred hhhcccchhhccCCcceeccCCCCCCc-cccccccCccccccc-------cCCC-CCCCCeEEEEcCCCccHHHHHHHHH
Q 024010 90 LFFRFGTGVFVSGYSASFVSKDEIPPD-QYTLEIAGFKVKETS-------KLGP-RPEKPIEIYEYESCPFCRKVREIVA 160 (274)
Q Consensus 90 ~~~r~g~G~~~~g~~~~lv~~~~~~~~-~yal~~~g~r~~r~s-------~l~~-~~~~~l~LY~~~~cP~CrkVr~~L~ 160 (274)
-++.+=...|..-|...+....++... ++...-+++..+... .+.. .....+..|...+||+|++..-.|.
T Consensus 110 ~~~~~ka~~Fa~~~~~~~~~~P~Ldy~~~~P~~~~a~~~~~~~~~~~~~~~l~~l~~k~~Lv~F~AswCp~C~~~~P~L~ 189 (271)
T TIGR02740 110 RIMLDKASRFADVSQRVIWTDPILDETLRRPVSTLALDAHDTTAKKQKDRVMKDLAKKSGLFFFFKSDCPYCHQQAPILQ 189 (271)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCccccCCchHHHHHHHHHHHHHHHHHHHHHhcCCeEEEEEECCCCccHHHHhHHHH
Confidence 345556677777777665555555321 111222333332210 0000 1122345556689999997765554
Q ss_pred ----HcCCCeEEEEcCCCCC------CChhHHHhhCCCCceeEEE
Q 024010 161 ----VLDLDVLYYPCPRNGP------NFRPKVLQMGGKKQFPYMV 195 (274)
Q Consensus 161 ----e~gI~ye~~~v~~~~~------~~~~e~~~inp~gkVPvLv 195 (274)
+.|+.+..+.++.+.. .....+.+..+-..+|.++
T Consensus 190 ~la~~yg~~Vi~VsvD~~~~~~fp~~~~d~~la~~~gV~~vPtl~ 234 (271)
T TIGR02740 190 AFEDRYGIEVLPVSVDGGPLPGFPNARPDAGQAQQLKIRTVPAVF 234 (271)
T ss_pred HHHHHcCcEEEEEeCCCCccccCCcccCCHHHHHHcCCCcCCeEE
Confidence 4555554444432110 0012344555667899994
No 192
>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.
Probab=61.47 E-value=12 Score=30.91 Aligned_cols=35 Identities=17% Similarity=0.348 Sum_probs=24.4
Q ss_pred CCCeEEEEcCCCccHHHHHHHHHHc------CCCeEEEEcC
Q 024010 138 EKPIEIYEYESCPFCRKVREIVAVL------DLDVLYYPCP 172 (274)
Q Consensus 138 ~~~l~LY~~~~cP~CrkVr~~L~e~------gI~ye~~~v~ 172 (274)
...|..|....||+|++....+... ++.|+.+++.
T Consensus 16 ~~~i~~f~D~~Cp~C~~~~~~~~~~~~~~~~~v~~~~~~~~ 56 (178)
T cd03019 16 KPEVIEFFSYGCPHCYNFEPILEAWVKKLPKDVKFEKVPVV 56 (178)
T ss_pred CcEEEEEECCCCcchhhhhHHHHHHHHhCCCCceEEEcCCc
Confidence 4467888889999999887666432 4556666653
No 193
>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif. Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.
Probab=61.05 E-value=42 Score=26.29 Aligned_cols=21 Identities=14% Similarity=0.230 Sum_probs=15.0
Q ss_pred eEEEEcCCCccHHHHHHHHHH
Q 024010 141 IEIYEYESCPFCRKVREIVAV 161 (274)
Q Consensus 141 l~LY~~~~cP~CrkVr~~L~e 161 (274)
+..|...+||.|++..-.|.+
T Consensus 29 vv~F~a~~C~~C~~~~~~l~~ 49 (127)
T cd03010 29 LLNVWASWCAPCREEHPVLMA 49 (127)
T ss_pred EEEEEcCcCHHHHHHHHHHHH
Confidence 455566899999976665544
No 194
>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source. mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.
Probab=60.62 E-value=12 Score=28.66 Aligned_cols=56 Identities=16% Similarity=0.373 Sum_probs=29.4
Q ss_pred eEEEEcCCCccHHHHHHHHHHcC----CCeEEEEcCCCCCCChhHHHhhCCCCceeEEEE
Q 024010 141 IEIYEYESCPFCRKVREIVAVLD----LDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMVD 196 (274)
Q Consensus 141 l~LY~~~~cP~CrkVr~~L~e~g----I~ye~~~v~~~~~~~~~e~~~inp~gkVPvLvd 196 (274)
+..|...+||.|++..-.+++.. -.+..+.+..+......++.+..+...+|++.+
T Consensus 25 vl~F~~~wC~~C~~~~p~l~~~~~~~~~~~~vi~v~~~~~~~~~~~~~~~~~~~~p~~~~ 84 (114)
T cd02967 25 LLFFLSPTCPVCKKLLPVIRSIARAEADWLDVVLASDGEKAEHQRFLKKHGLEAFPYVLS 84 (114)
T ss_pred EEEEECCCCcchHhHhHHHHHHHHHhcCCcEEEEEeCCCHHHHHHHHHHhCCCCCcEEec
Confidence 44455589999997765554421 123333332222222344666655555777653
No 195
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=59.58 E-value=47 Score=31.74 Aligned_cols=77 Identities=16% Similarity=0.200 Sum_probs=47.4
Q ss_pred CCeEEEEcCCCccHHHHHHHHH-------HcC--CCeEEEEcCCCCCCChhHHHhhCCCCceeEEE-EcCCCc--ee---
Q 024010 139 KPIEIYEYESCPFCRKVREIVA-------VLD--LDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMV-DPNTGV--SM--- 203 (274)
Q Consensus 139 ~~l~LY~~~~cP~CrkVr~~L~-------e~g--I~ye~~~v~~~~~~~~~e~~~inp~gkVPvLv-d~n~G~--~I--- 203 (274)
.-+.+|+.+||++|++..-.+. ..+ +.+-.++|.. ..++.+..+-..+|.++ ..+++. .-
T Consensus 20 ~~~v~f~a~wC~~c~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~-----~~~l~~~~~i~~~Pt~~~~~~g~~~~~~~~g 94 (462)
T TIGR01130 20 FVLVEFYAPWCGHCKSLAPEYEKAADELKKKGPPIKLAKVDATE-----EKDLAQKYGVSGYPTLKIFRNGEDSVSDYNG 94 (462)
T ss_pred CEEEEEECCCCHHHHhhhHHHHHHHHHHhhcCCceEEEEEECCC-----cHHHHHhCCCccccEEEEEeCCccceeEecC
Confidence 3477788899999998754332 233 4444444422 24566666777899884 332332 11
Q ss_pred -eCHHHHHHHHhhhcCCC
Q 024010 204 -YESDNIIKYLVGKYGDG 220 (274)
Q Consensus 204 -~ES~aIi~YL~~~y~~~ 220 (274)
.+..+|.+|+.+..+..
T Consensus 95 ~~~~~~l~~~i~~~~~~~ 112 (462)
T TIGR01130 95 PRDADGIVKYMKKQSGPA 112 (462)
T ss_pred CCCHHHHHHHHHHhcCCC
Confidence 35788999998877543
No 196
>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.
Probab=57.40 E-value=10 Score=28.44 Aligned_cols=51 Identities=14% Similarity=0.119 Sum_probs=30.0
Q ss_pred CeEEEEcCCCccHHHHHHHHHH-----c-CCCeEEEEcCCCCCCChhHHHhhCCCCceeEEE
Q 024010 140 PIEIYEYESCPFCRKVREIVAV-----L-DLDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMV 195 (274)
Q Consensus 140 ~l~LY~~~~cP~CrkVr~~L~e-----~-gI~ye~~~v~~~~~~~~~e~~~inp~gkVPvLv 195 (274)
-+.+|+.++|+.|+...-.+.+ . .+.+-.+++. ..+++.+..+-..+|.++
T Consensus 21 vlv~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~id~~-----~~~~~~~~~~i~~~P~~~ 77 (103)
T cd03001 21 WLVEFYAPWCGHCKNLAPEWKKAAKALKGIVKVGAVDAD-----VHQSLAQQYGVRGFPTIK 77 (103)
T ss_pred EEEEEECCCCHHHHHHhHHHHHHHHHhcCCceEEEEECc-----chHHHHHHCCCCccCEEE
Confidence 4566677999999987654433 1 2233333332 234555555666899884
No 197
>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.
Probab=57.00 E-value=26 Score=27.93 Aligned_cols=51 Identities=25% Similarity=0.349 Sum_probs=27.0
Q ss_pred cCCCccHHHHHHHHHHc-----CCCeEEEEcCCCCCCChhHHHhhCCCCceeEEEEc
Q 024010 146 YESCPFCRKVREIVAVL-----DLDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMVDP 197 (274)
Q Consensus 146 ~~~cP~CrkVr~~L~e~-----gI~ye~~~v~~~~~~~~~e~~~inp~gkVPvLvd~ 197 (274)
..+||.|++-...|.+. +..++.+-|..+.......|.+..+ -.+|++.|+
T Consensus 33 ~~~Cp~C~~~~~~l~~~~~~~~~~~v~vv~V~~~~~~~~~~~~~~~~-~~~p~~~D~ 88 (149)
T cd02970 33 GFGCPFCREYLRALSKLLPELDALGVELVAVGPESPEKLEAFDKGKF-LPFPVYADP 88 (149)
T ss_pred CCCChhHHHHHHHHHHHHHHHHhcCeEEEEEeCCCHHHHHHHHHhcC-CCCeEEECC
Confidence 47999999755444331 1234444443222222234555443 368988884
No 198
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=56.66 E-value=13 Score=30.31 Aligned_cols=64 Identities=11% Similarity=-0.045 Sum_probs=40.2
Q ss_pred CCCeEEEEcCC--CccHHHHHHHHHHcCCCe----EEEEcCCCCCCChhHHHhhCCCCceeEEEEcCCCceee
Q 024010 138 EKPIEIYEYES--CPFCRKVREIVAVLDLDV----LYYPCPRNGPNFRPKVLQMGGKKQFPYMVDPNTGVSMY 204 (274)
Q Consensus 138 ~~~l~LY~~~~--cP~CrkVr~~L~e~gI~y----e~~~v~~~~~~~~~e~~~inp~gkVPvLvd~n~G~~I~ 204 (274)
...+..|+-.+ ||.|+.+.-.|.+.--.| ....+.. + ..+++.+..+-..+|.|+.=.+|..+.
T Consensus 28 ~~~v~~f~~~~~~cp~c~~i~P~leela~e~~~~v~f~kVdi--d-~~~~la~~f~V~sIPTli~fkdGk~v~ 97 (111)
T cd02965 28 GDLVLLLAGDPVRFPEVLDVAVVLPELLKAFPGRFRAAVVGR--A-DEQALAARFGVLRTPALLFFRDGRYVG 97 (111)
T ss_pred CCEEEEecCCcccCcchhhhHhHHHHHHHHCCCcEEEEEEEC--C-CCHHHHHHcCCCcCCEEEEEECCEEEE
Confidence 34577777774 999999887776543333 2222221 1 234788888888999995322666544
No 199
>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=56.64 E-value=36 Score=29.90 Aligned_cols=77 Identities=18% Similarity=0.289 Sum_probs=46.0
Q ss_pred CeEEEEcCCCccHHHH----------HHHHHHc------CCCeEEEEc-CCCCC---CChhHHHhhCCCCceeEEE--Ec
Q 024010 140 PIEIYEYESCPFCRKV----------REIVAVL------DLDVLYYPC-PRNGP---NFRPKVLQMGGKKQFPYMV--DP 197 (274)
Q Consensus 140 ~l~LY~~~~cP~CrkV----------r~~L~e~------gI~ye~~~v-~~~~~---~~~~e~~~inp~gkVPvLv--d~ 197 (274)
-+.+|..+.|+||.+. |++|+.+ ++.+..-.+ ..++. ....|+.+...-...|.++ |.
T Consensus 45 lllmfes~~C~yC~~~KKd~~~~krlrEylk~hf~~~~l~i~~skpv~f~~g~kee~~s~~ELa~kf~vrstPtfvFfdk 124 (182)
T COG2143 45 LLLMFESNGCSYCERFKKDLKNVKRLREYLKEHFSAYYLNISYSKPVLFKVGDKEEKMSTEELAQKFAVRSTPTFVFFDK 124 (182)
T ss_pred EEEEEcCCCChHHHHHHHhhcchHHHHHHHhhCeEEEEEEeccCcceEeecCceeeeecHHHHHHHhccccCceEEEEcC
Confidence 4678888999999854 4555552 111111111 11111 1235788888888889885 43
Q ss_pred CCCceeeC---------HHHHHHHHhhhc
Q 024010 198 NTGVSMYE---------SDNIIKYLVGKY 217 (274)
Q Consensus 198 n~G~~I~E---------S~aIi~YL~~~y 217 (274)
+|..|.+ =.+|++|.++.+
T Consensus 125 -~Gk~Il~lPGY~ppe~Fl~vlkYVa~g~ 152 (182)
T COG2143 125 -TGKTILELPGYMPPEQFLAVLKYVADGK 152 (182)
T ss_pred -CCCEEEecCCCCCHHHHHHHHHHHHHHH
Confidence 5566654 378899998643
No 200
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=56.27 E-value=14 Score=31.97 Aligned_cols=59 Identities=10% Similarity=0.075 Sum_probs=33.2
Q ss_pred eEEEEcCCCccHHHHHHHHHHcCC---CeEEEEcCCCCCCChhHHHhhCCCCceeEEEEcCCCcee
Q 024010 141 IEIYEYESCPFCRKVREIVAVLDL---DVLYYPCPRNGPNFRPKVLQMGGKKQFPYMVDPNTGVSM 203 (274)
Q Consensus 141 l~LY~~~~cP~CrkVr~~L~e~gI---~ye~~~v~~~~~~~~~e~~~inp~gkVPvLvd~n~G~~I 203 (274)
+..|+.++|+.|+.+.-.|..+-- .+..+.|..+ . . ++....+-..+|+|+.=.+|..+
T Consensus 87 VV~Fya~wc~~Ck~m~~~l~~LA~~~~~vkF~kVd~d--~-~-~l~~~f~v~~vPTlllyk~G~~v 148 (175)
T cd02987 87 VVHIYEPGIPGCAALNSSLLCLAAEYPAVKFCKIRAS--A-T-GASDEFDTDALPALLVYKGGELI 148 (175)
T ss_pred EEEEECCCCchHHHHHHHHHHHHHHCCCeEEEEEecc--c-h-hhHHhCCCCCCCEEEEEECCEEE
Confidence 344555999999977655543221 2333333221 1 1 56666777899999532256544
No 201
>cd03022 DsbA_HCCA_Iso DsbA family, 2-hydroxychromene-2-carboxylate (HCCA) isomerase subfamily; HCCA isomerase is a glutathione (GSH) dependent enzyme involved in the naphthalene catabolic pathway. It converts HCCA, a hemiketal formed spontaneously after ring cleavage of 1,2-dihydroxynapthalene by a dioxygenase, into cis-o-hydroxybenzylidenepyruvate (cHBPA). This is the fourth reaction in a six-step pathway that converts napthalene into salicylate. HCCA isomerase is unique to bacteria that degrade polycyclic aromatic compounds. It is closely related to the eukaryotic protein, GSH transferase kappa (GSTK).
Probab=56.20 E-value=14 Score=30.99 Aligned_cols=31 Identities=29% Similarity=0.315 Sum_probs=22.9
Q ss_pred eEEEEcCCCccHHHHHHH----HHHcCCCeEEEEc
Q 024010 141 IEIYEYESCPFCRKVREI----VAVLDLDVLYYPC 171 (274)
Q Consensus 141 l~LY~~~~cP~CrkVr~~----L~e~gI~ye~~~v 171 (274)
|.+|....||||.-.... ..+.++.++.+++
T Consensus 1 i~~~~D~~cP~cy~~~~~l~~~~~~~~~~i~~~p~ 35 (192)
T cd03022 1 IDFYFDFSSPYSYLAHERLPALAARHGATVRYRPI 35 (192)
T ss_pred CeEEEeCCChHHHHHHHHHHHHHHHhCCeeEEeee
Confidence 468899999999965444 4456777777776
No 202
>cd03021 DsbA_GSTK DsbA family, Glutathione (GSH) S-transferase Kappa (GSTK) subfamily; GSTK is a member of the GST family of enzymes which catalyzes the transfer of the thiol of GSH to electrophilic substrates. It is specifically located in the mitochondria and peroxisomes, unlike other members of the canonical GST family, which are mainly cytosolic. The biological substrates of GSTK are not yet known. It is presumed to have a protective role during respiration when large amounts of reactive oxygen species are generated. GSTK has the same general fold as DsbA, consisting of a thioredoxin domain interrupted by an alpha-helical domain and its biological unit is a homodimer. GSTK is closely related to the bacterial enzyme, 2-hydroxychromene-2-carboxylate (HCCA) isomerase. It shows little sequence similarity to the other members of the GST family.
Probab=55.77 E-value=17 Score=31.74 Aligned_cols=32 Identities=22% Similarity=0.408 Sum_probs=24.9
Q ss_pred CeEEEEcCCCccHHHH----HHHHHHcCCCeEEEEc
Q 024010 140 PIEIYEYESCPFCRKV----REIVAVLDLDVLYYPC 171 (274)
Q Consensus 140 ~l~LY~~~~cP~CrkV----r~~L~e~gI~ye~~~v 171 (274)
.|.+|....||||.-. ..+++..+++++.+++
T Consensus 2 ~Id~~~D~vcPwcylg~~~l~~~~~~~~v~i~~~P~ 37 (209)
T cd03021 2 KIELYYDVVSPYSYLAFEVLCRYQTAWNVDITYVPV 37 (209)
T ss_pred ceEEEEeCCChHHHHHHHHHHHHHHHhCCeEEEEee
Confidence 5889999999999855 4445567888887776
No 203
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=55.27 E-value=15 Score=31.28 Aligned_cols=59 Identities=20% Similarity=0.178 Sum_probs=33.2
Q ss_pred eEEEEcCCCccHHHHHHHHHHc-------CCCeEEEEcCCCCCCChhHHHhhCCC------CceeEEEEcCCCceee
Q 024010 141 IEIYEYESCPFCRKVREIVAVL-------DLDVLYYPCPRNGPNFRPKVLQMGGK------KQFPYMVDPNTGVSMY 204 (274)
Q Consensus 141 l~LY~~~~cP~CrkVr~~L~e~-------gI~ye~~~v~~~~~~~~~e~~~inp~------gkVPvLvd~n~G~~I~ 204 (274)
+..|+.++|+.|+...-.+++. ++.+-.+++.. .+++.+...- +++|.++.=.+|..+.
T Consensus 51 vV~Fya~wC~~Ck~l~p~l~~la~~~~~~~v~f~~VDvd~-----~~~la~~~~V~~~~~v~~~PT~ilf~~Gk~v~ 122 (152)
T cd02962 51 LVEFFTTWSPECVNFAPVFAELSLKYNNNNLKFGKIDIGR-----FPNVAEKFRVSTSPLSKQLPTIILFQGGKEVA 122 (152)
T ss_pred EEEEECCCCHHHHHHHHHHHHHHHHcccCCeEEEEEECCC-----CHHHHHHcCceecCCcCCCCEEEEEECCEEEE
Confidence 6677779999999877655432 23344444422 2244443333 3489885322666544
No 204
>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox. ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.
Probab=55.14 E-value=13 Score=29.92 Aligned_cols=53 Identities=11% Similarity=0.057 Sum_probs=31.8
Q ss_pred CCCeEEEEcCCCccHHHHHHHHHHcC------CCeEEEEcCCCCCCChhHHH-hhCCCCceeEEE
Q 024010 138 EKPIEIYEYESCPFCRKVREIVAVLD------LDVLYYPCPRNGPNFRPKVL-QMGGKKQFPYMV 195 (274)
Q Consensus 138 ~~~l~LY~~~~cP~CrkVr~~L~e~g------I~ye~~~v~~~~~~~~~e~~-~inp~gkVPvLv 195 (274)
..-+..|+-+||++|+...-.+++.. +.+-.+++. ...++. +...-..+|.|+
T Consensus 30 ~~vlV~FyA~WC~~Ck~l~p~~~~la~~~~~~v~~~~Vd~d-----~~~~l~~~~~~I~~~PTl~ 89 (113)
T cd03006 30 EVSLVMYYAPWDAQSQAARQEFEQVAQKLSDQVLFVAINCW-----WPQGKCRKQKHFFYFPVIH 89 (113)
T ss_pred CEEEEEEECCCCHHHHHHHHHHHHHHHHhcCCeEEEEEECC-----CChHHHHHhcCCcccCEEE
Confidence 34467778899999998876666533 222223332 122444 345556789884
No 205
>PLN02309 5'-adenylylsulfate reductase
Probab=54.49 E-value=73 Score=32.06 Aligned_cols=75 Identities=16% Similarity=0.281 Sum_probs=40.4
Q ss_pred CCeEEEEcCCCccHHHHHHHHHHc-----CCCeEEEEcCCCCCCChhHHHh-hCCCCceeEEEE-cCCC--ceeeC----
Q 024010 139 KPIEIYEYESCPFCRKVREIVAVL-----DLDVLYYPCPRNGPNFRPKVLQ-MGGKKQFPYMVD-PNTG--VSMYE---- 205 (274)
Q Consensus 139 ~~l~LY~~~~cP~CrkVr~~L~e~-----gI~ye~~~v~~~~~~~~~e~~~-inp~gkVPvLvd-~n~G--~~I~E---- 205 (274)
.-+..|+-++|++|+...-.+.+. +..+....+..+.. ..++.+ ...-..+|.|+. .++. .+.|.
T Consensus 367 ~vlV~FyApWC~~Cq~m~p~~e~LA~~~~~~~V~f~kVD~d~~--~~~la~~~~~I~~~PTil~f~~g~~~~v~Y~~~~R 444 (457)
T PLN02309 367 PWLVVLYAPWCPFCQAMEASYEELAEKLAGSGVKVAKFRADGD--QKEFAKQELQLGSFPTILLFPKNSSRPIKYPSEKR 444 (457)
T ss_pred eEEEEEECCCChHHHHHHHHHHHHHHHhccCCeEEEEEECCCc--chHHHHhhCCCceeeEEEEEeCCCCCeeecCCCCc
Confidence 356778889999999766555432 22233333322211 123443 356679999953 3222 23443
Q ss_pred -HHHHHHHHhh
Q 024010 206 -SDNIIKYLVG 215 (274)
Q Consensus 206 -S~aIi~YL~~ 215 (274)
..+|+.|+.+
T Consensus 445 ~~~~L~~fv~~ 455 (457)
T PLN02309 445 DVDSLLSFVNS 455 (457)
T ss_pred CHHHHHHHHHH
Confidence 3566666654
No 206
>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1. PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu
Probab=54.37 E-value=12 Score=27.86 Aligned_cols=22 Identities=14% Similarity=0.276 Sum_probs=16.5
Q ss_pred CeEEEEcCCCccHHHHHHHHHH
Q 024010 140 PIEIYEYESCPFCRKVREIVAV 161 (274)
Q Consensus 140 ~l~LY~~~~cP~CrkVr~~L~e 161 (274)
-+.+|+.++|++|+...-.+.+
T Consensus 21 ~~v~f~~~~C~~C~~~~~~~~~ 42 (104)
T cd02995 21 VLVEFYAPWCGHCKALAPIYEE 42 (104)
T ss_pred EEEEEECCCCHHHHHHhhHHHH
Confidence 4666777999999987665543
No 207
>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins. Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....
Probab=54.07 E-value=30 Score=27.82 Aligned_cols=50 Identities=24% Similarity=0.325 Sum_probs=27.6
Q ss_pred EEcC-CCccHHHHHHHHHH-------cCCCeEEEEcCCCCCCChhHHHhhCCCCceeEEEE
Q 024010 144 YEYE-SCPFCRKVREIVAV-------LDLDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMVD 196 (274)
Q Consensus 144 Y~~~-~cP~CrkVr~~L~e-------~gI~ye~~~v~~~~~~~~~e~~~inp~gkVPvLvd 196 (274)
+... +||.|++-...|.+ +|+.+..+.... .. ...+|.+. -...+|++.|
T Consensus 35 f~~~~~Cp~C~~~~p~l~~l~~~~~~~~v~~v~v~~~~-~~-~~~~~~~~-~~~~~~~~~D 92 (146)
T PF08534_consen 35 FWASAWCPPCRKELPYLNELQEKYKDKGVDVVGVSSDD-DP-PVREFLKK-YGINFPVLSD 92 (146)
T ss_dssp EESTTTSHHHHHHHHHHHHHHHHHHTTTCEEEEEEESS-SH-HHHHHHHH-TTTTSEEEEE
T ss_pred EEccCCCCcchhhhhhHHhhhhhhccCceEEEEecccC-CH-HHHHHHHh-hCCCceEEec
Confidence 3335 89999976644433 344444443322 22 24555555 3337888887
No 208
>PHA03075 glutaredoxin-like protein; Provisional
Probab=53.43 E-value=17 Score=30.22 Aligned_cols=33 Identities=15% Similarity=0.342 Sum_probs=29.2
Q ss_pred CCeEEEEcCCCccHHHHHHHHHHcCCCeEEEEc
Q 024010 139 KPIEIYEYESCPFCRKVREIVAVLDLDVLYYPC 171 (274)
Q Consensus 139 ~~l~LY~~~~cP~CrkVr~~L~e~gI~ye~~~v 171 (274)
..+.|++.+.|+-|.-+..+|++..=.|+...|
T Consensus 3 ~tLILfGKP~C~vCe~~s~~l~~ledeY~ilrV 35 (123)
T PHA03075 3 KTLILFGKPLCSVCESISEALKELEDEYDILRV 35 (123)
T ss_pred ceEEEeCCcccHHHHHHHHHHHHhhccccEEEE
Confidence 468999999999999999999988888888765
No 209
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=53.13 E-value=13 Score=30.18 Aligned_cols=36 Identities=19% Similarity=0.448 Sum_probs=23.8
Q ss_pred CCCeEEEEcCCCccHHHHHHHHH----Hc----CCCeEEEEcCC
Q 024010 138 EKPIEIYEYESCPFCRKVREIVA----VL----DLDVLYYPCPR 173 (274)
Q Consensus 138 ~~~l~LY~~~~cP~CrkVr~~L~----e~----gI~ye~~~v~~ 173 (274)
...|++|....||+|++....+. +. .+.|..++++.
T Consensus 13 ~~~v~~f~d~~Cp~C~~~~~~~~~~~~~~i~~~~v~~~~~~~~~ 56 (162)
T PF13462_consen 13 PITVTEFFDFQCPHCAKFHEELEKLLKKYIDPGKVKFVFRPVPL 56 (162)
T ss_dssp SEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEESSS
T ss_pred CeEEEEEECCCCHhHHHHHHHHhhhhhhccCCCceEEEEEEccc
Confidence 34688999999999998865553 32 45566666543
No 210
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=52.93 E-value=46 Score=33.87 Aligned_cols=77 Identities=14% Similarity=0.150 Sum_probs=51.1
Q ss_pred eEEEEcCCCccHHH-------HHHHHHHcCCCeEEEEcCCCCCCChhHHHhhCCCCceeEEEE-cCCCc-----eeeCHH
Q 024010 141 IEIYEYESCPFCRK-------VREIVAVLDLDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMVD-PNTGV-----SMYESD 207 (274)
Q Consensus 141 l~LY~~~~cP~Crk-------Vr~~L~e~gI~ye~~~v~~~~~~~~~e~~~inp~gkVPvLvd-~n~G~-----~I~ES~ 207 (274)
+..|+-+||..|.+ +--.|++.|=++...-|+. ....++.....-..+|.|.+ .||.. -..+.+
T Consensus 46 lVeFYAPWCghck~LaPey~kAA~~Lke~~s~i~LakVDa---t~~~~~~~~y~v~gyPTlkiFrnG~~~~~Y~G~r~ad 122 (493)
T KOG0190|consen 46 LVEFYAPWCGHCKALAPEYEKAATELKEEGSPVKLAKVDA---TEESDLASKYEVRGYPTLKIFRNGRSAQDYNGPREAD 122 (493)
T ss_pred EEEEEchhhhhhhhhCcHHHHHHHHhhccCCCceeEEeec---chhhhhHhhhcCCCCCeEEEEecCCcceeccCcccHH
Confidence 56777799999984 4456667655555544422 11246777777778899843 33332 135689
Q ss_pred HHHHHHhhhcCCC
Q 024010 208 NIIKYLVGKYGDG 220 (274)
Q Consensus 208 aIi~YL~~~y~~~ 220 (274)
.|+.||-++.|..
T Consensus 123 gIv~wl~kq~gPa 135 (493)
T KOG0190|consen 123 GIVKWLKKQSGPA 135 (493)
T ss_pred HHHHHHHhccCCC
Confidence 9999999999865
No 211
>cd03024 DsbA_FrnE DsbA family, FrnE subfamily; FrnE is a DsbA-like protein containing a CXXC motif. It is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=52.00 E-value=18 Score=30.76 Aligned_cols=31 Identities=29% Similarity=0.666 Sum_probs=22.4
Q ss_pred eEEEEcCCCccHHHHHHH----HHHc----CCCeEEEEc
Q 024010 141 IEIYEYESCPFCRKVREI----VAVL----DLDVLYYPC 171 (274)
Q Consensus 141 l~LY~~~~cP~CrkVr~~----L~e~----gI~ye~~~v 171 (274)
|++|....||||.-.... +++. ++.++.+++
T Consensus 1 I~~~~D~~cP~cyl~~~~l~~~~~~~~~~~~~~v~~~p~ 39 (201)
T cd03024 1 IDIWSDVVCPWCYIGKRRLEKALAELGDEVDVEIEWRPF 39 (201)
T ss_pred CeEEecCcCccHHHHHHHHHHHHHhCCCCCceEEEEeee
Confidence 568999999999955544 4455 577777766
No 212
>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.
Probab=51.83 E-value=83 Score=26.66 Aligned_cols=31 Identities=16% Similarity=0.583 Sum_probs=20.9
Q ss_pred eEEEEcCCCccHHHHHHHHHH----cCCCeEEEEc
Q 024010 141 IEIYEYESCPFCRKVREIVAV----LDLDVLYYPC 171 (274)
Q Consensus 141 l~LY~~~~cP~CrkVr~~L~e----~gI~ye~~~v 171 (274)
+..|...+||+|++-.-.|.+ .|+.+..+.+
T Consensus 54 lvnFWAsWCppCr~e~P~L~~l~~~~~~~Vi~Vs~ 88 (153)
T TIGR02738 54 LVFFYQSTCPYCHQFAPVLKRFSQQFGLPVYAFSL 88 (153)
T ss_pred EEEEECCCChhHHHHHHHHHHHHHHcCCcEEEEEe
Confidence 677777999999987766643 3544444444
No 213
>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX. Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.
Probab=51.71 E-value=49 Score=26.40 Aligned_cols=20 Identities=20% Similarity=0.373 Sum_probs=13.6
Q ss_pred eEEEEcCCCccHHHHHHHHH
Q 024010 141 IEIYEYESCPFCRKVREIVA 160 (274)
Q Consensus 141 l~LY~~~~cP~CrkVr~~L~ 160 (274)
+..|...+|+.|+...-.|.
T Consensus 21 ll~F~atwC~~C~~~~p~l~ 40 (132)
T cd02964 21 GLYFSASWCPPCRAFTPKLV 40 (132)
T ss_pred EEEEECCCCchHHHHHHHHH
Confidence 34445589999998665543
No 214
>cd03025 DsbA_FrnE_like DsbA family, FrnE-like subfamily; composed of uncharacterized proteins containing a CXXC motif with similarity to DsbA and FrnE. FrnE is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=49.91 E-value=26 Score=29.45 Aligned_cols=32 Identities=9% Similarity=0.214 Sum_probs=22.7
Q ss_pred CeEEEEcCCCccHHHHHHHH----HHc--CCCeEEEEc
Q 024010 140 PIEIYEYESCPFCRKVREIV----AVL--DLDVLYYPC 171 (274)
Q Consensus 140 ~l~LY~~~~cP~CrkVr~~L----~e~--gI~ye~~~v 171 (274)
+|.+|....||||......| ++. ++.++.+..
T Consensus 2 ~i~~~~D~~cp~c~~~~~~l~~l~~~~~~~~~v~~~~~ 39 (193)
T cd03025 2 ELYYFIDPLCGWCYGFEPLLEKLKEEYGGGIEVELHLG 39 (193)
T ss_pred eEEEEECCCCchhhCchHHHHHHHHHhCCCceEEEEec
Confidence 57899999999999555444 343 677776654
No 215
>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like.; PDB: 1V9W_A 1WOU_A.
Probab=48.01 E-value=65 Score=26.48 Aligned_cols=63 Identities=14% Similarity=0.153 Sum_probs=30.8
Q ss_pred CCCccHHHHHH----HHHHc--CCCeEEEEcCCCC-CC-ChhHHHh--hCCCCceeEEEEcCCCceeeCHHHH
Q 024010 147 ESCPFCRKVRE----IVAVL--DLDVLYYPCPRNG-PN-FRPKVLQ--MGGKKQFPYMVDPNTGVSMYESDNI 209 (274)
Q Consensus 147 ~~cP~CrkVr~----~L~e~--gI~ye~~~v~~~~-~~-~~~e~~~--inp~gkVPvLvd~n~G~~I~ES~aI 209 (274)
.|||.|+++.- +++.. +..+..+.|.... .. ....|+. .-.-..||.|+-=+++..|.|....
T Consensus 36 sWCPDC~~aep~v~~~f~~~~~~~~lv~v~VG~r~~Wkdp~n~fR~~p~~~l~~IPTLi~~~~~~rL~e~e~~ 108 (119)
T PF06110_consen 36 SWCPDCVAAEPVVEKAFKKAPENARLVYVEVGDRPEWKDPNNPFRTDPDLKLKGIPTLIRWETGERLVEEECL 108 (119)
T ss_dssp BSSHHHHHHHHHHHHHHHH-STTEEEEEEE---HHHHC-TTSHHHH--CC---SSSEEEECTSS-EEEHHHHH
T ss_pred cccHHHHHHHHHHHHHHHhCCCCceEEEEEcCCHHHhCCCCCCceEcceeeeeecceEEEECCCCccchhhhc
Confidence 58999998874 44443 3334444553110 00 0124555 3445689999743355667775443
No 216
>COG5494 Predicted thioredoxin/glutaredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=47.94 E-value=38 Score=31.11 Aligned_cols=74 Identities=18% Similarity=0.169 Sum_probs=51.4
Q ss_pred CCCCeEEEEcCCCccHHHHHHHHHHcCCCeEEEEcCCCCCCChhHHHh-hCCCCceeEEEEcCCCcee----eCHHHHHH
Q 024010 137 PEKPIEIYEYESCPFCRKVREIVAVLDLDVLYYPCPRNGPNFRPKVLQ-MGGKKQFPYMVDPNTGVSM----YESDNIIK 211 (274)
Q Consensus 137 ~~~~l~LY~~~~cP~CrkVr~~L~e~gI~ye~~~v~~~~~~~~~e~~~-inp~gkVPvLvd~n~G~~I----~ES~aIi~ 211 (274)
..+.+++|.+..|--|...-..|+++|+-=....+... .+-|.. .++--.||.++. ||..+ .|-++|-.
T Consensus 9 ~~~~VkI~~HktC~ssy~Lf~~L~nkgll~~Vkii~a~----~p~f~~~~~~V~SvP~Vf~--DGel~~~dpVdp~~ies 82 (265)
T COG5494 9 IEMEVKIFTHKTCVSSYMLFEYLENKGLLGKVKIIDAE----LPPFLAFEKGVISVPSVFI--DGELVYADPVDPEEIES 82 (265)
T ss_pred hheEEEEEEecchHHHHHHHHHHHhcCCCCCceEEEcC----CChHHHhhcceeecceEEE--cCeEEEcCCCCHHHHHH
Confidence 35679999999999999999999999986444333221 223443 346668999988 67644 34677777
Q ss_pred HHhhh
Q 024010 212 YLVGK 216 (274)
Q Consensus 212 YL~~~ 216 (274)
-+..+
T Consensus 83 ~~~G~ 87 (265)
T COG5494 83 ILSGQ 87 (265)
T ss_pred HHcCc
Confidence 66653
No 217
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=47.41 E-value=32 Score=32.83 Aligned_cols=78 Identities=12% Similarity=0.112 Sum_probs=51.7
Q ss_pred CCeEEEEcCCCccHHHHHHHHHHc----CCCeEEEEcCCCCCCChhHHHhhCCCCceeEEEEcCCCceeeC------HHH
Q 024010 139 KPIEIYEYESCPFCRKVREIVAVL----DLDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMVDPNTGVSMYE------SDN 208 (274)
Q Consensus 139 ~~l~LY~~~~cP~CrkVr~~L~e~----gI~ye~~~v~~~~~~~~~e~~~inp~gkVPvLvd~n~G~~I~E------S~a 208 (274)
+-+.+|+.++|+.|+...-.|+.. +=.|...-|.. ...+.+....+-..+|+++-=-+|..+.+ -+.
T Consensus 45 PVlV~fWap~~~~c~qL~p~Lekla~~~~G~f~LakvN~---D~~p~vAaqfgiqsIPtV~af~dGqpVdgF~G~qPesq 121 (304)
T COG3118 45 PVLVDFWAPWCGPCKQLTPTLEKLAAEYKGKFKLAKVNC---DAEPMVAAQFGVQSIPTVYAFKDGQPVDGFQGAQPESQ 121 (304)
T ss_pred CeEEEecCCCCchHHHHHHHHHHHHHHhCCceEEEEecC---CcchhHHHHhCcCcCCeEEEeeCCcCccccCCCCcHHH
Confidence 346777789999999887766542 33355544422 23568899999999999842115554433 468
Q ss_pred HHHHHhhhcCC
Q 024010 209 IIKYLVGKYGD 219 (274)
Q Consensus 209 Ii~YL~~~y~~ 219 (274)
|-+||++.-+.
T Consensus 122 lr~~ld~~~~~ 132 (304)
T COG3118 122 LRQFLDKVLPA 132 (304)
T ss_pred HHHHHHHhcCh
Confidence 89999876654
No 218
>KOG0910 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=46.74 E-value=25 Score=30.26 Aligned_cols=66 Identities=14% Similarity=0.173 Sum_probs=43.2
Q ss_pred CCCCCCeEEEEcCCCccHHHHHHHHHHcCCC----eEEEEcCCCCCCChhHHHhhCCCCceeEEEEcCCCcee
Q 024010 135 PRPEKPIEIYEYESCPFCRKVREIVAVLDLD----VLYYPCPRNGPNFRPKVLQMGGKKQFPYMVDPNTGVSM 203 (274)
Q Consensus 135 ~~~~~~l~LY~~~~cP~CrkVr~~L~e~gI~----ye~~~v~~~~~~~~~e~~~inp~gkVPvLvd~n~G~~I 203 (274)
+....-+.-|+-+||..|+-..-.|++..-+ +..+.++. ....++.....-..||+++.=.+|...
T Consensus 59 ~S~~PVlVdF~A~WCgPCk~l~P~l~~~~~~~~g~~k~~kvdt---D~~~ela~~Y~I~avPtvlvfknGe~~ 128 (150)
T KOG0910|consen 59 NSDVPVLVDFHAEWCGPCKMLGPILEELVSEYAGKFKLYKVDT---DEHPELAEDYEISAVPTVLVFKNGEKV 128 (150)
T ss_pred ccCCCEEEEEecCcCccHhHhhHHHHHHHHhhcCeEEEEEEcc---ccccchHhhcceeeeeEEEEEECCEEe
Confidence 3444557889999999999888877765444 33333322 224577888888899999531155433
No 219
>PRK13703 conjugal pilus assembly protein TraF; Provisional
Probab=46.22 E-value=1e+02 Score=28.55 Aligned_cols=111 Identities=16% Similarity=0.232 Sum_probs=58.9
Q ss_pred hhcccchhhccCCcceeccCCCCCCc-cccccccCccccccccC------CC--CCCCCeEEEEcCCCccHHH----HHH
Q 024010 91 FFRFGTGVFVSGYSASFVSKDEIPPD-QYTLEIAGFKVKETSKL------GP--RPEKPIEIYEYESCPFCRK----VRE 157 (274)
Q Consensus 91 ~~r~g~G~~~~g~~~~lv~~~~~~~~-~yal~~~g~r~~r~s~l------~~--~~~~~l~LY~~~~cP~Crk----Vr~ 157 (274)
++.+=.+.|..-|...+....++... ++...-.|++.+....- .. ...-.+.+|....||+|.+ ++.
T Consensus 88 ~~~dka~~Fa~~~~~v~l~~PeLdy~l~~P~~~~a~~~~~~~~~~~~~~~i~~la~~~GL~fFy~s~Cp~C~~~aPil~~ 167 (248)
T PRK13703 88 YWTQQAGLFSMSAKKAMLAHPELDYNLQYSHYNGTVRNQLAADQAQQRQAIAKLAEHYGLMFFYRGQDPIDGQLAQVIND 167 (248)
T ss_pred HHHHHHHHHHHHHHHHHhhCCCCCccccCCchHHHHHHHHHHHHHHHHHHHHHHHhcceEEEEECCCCchhHHHHHHHHH
Confidence 45566677877777766666566332 22333344443332000 01 1223466777788999995 556
Q ss_pred HHHHcCCCeEEEEcCC-CCCC---Ch--hHHHhhCCCCceeEEE--EcCCCc
Q 024010 158 IVAVLDLDVLYYPCPR-NGPN---FR--PKVLQMGGKKQFPYMV--DPNTGV 201 (274)
Q Consensus 158 ~L~e~gI~ye~~~v~~-~~~~---~~--~e~~~inp~gkVPvLv--d~n~G~ 201 (274)
+-+..|+++..+.++. ..+. .+ ....+.-+-..+|.|+ +++++.
T Consensus 168 fa~~yg~~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~~PAl~Lv~~~t~~ 219 (248)
T PRK13703 168 FRDTYGLSVIPVSVDGVINPLLPDSRTDQGQAQRLGVKYFPALMLVDPKSGS 219 (248)
T ss_pred HHHHhCCeEEEEecCCCCCCCCCCCccChhHHHhcCCcccceEEEEECCCCc
Confidence 6667888777776632 1111 11 1112233445789984 454543
No 220
>PTZ00056 glutathione peroxidase; Provisional
Probab=46.10 E-value=49 Score=29.03 Aligned_cols=74 Identities=14% Similarity=0.246 Sum_probs=36.0
Q ss_pred eEEEEcCCCccHHHHHHHHHH-------cCCCeEEEEcCC------CCCCChhHHHhhCCCCceeEEEEcCCCceeeCHH
Q 024010 141 IEIYEYESCPFCRKVREIVAV-------LDLDVLYYPCPR------NGPNFRPKVLQMGGKKQFPYMVDPNTGVSMYESD 207 (274)
Q Consensus 141 l~LY~~~~cP~CrkVr~~L~e-------~gI~ye~~~v~~------~~~~~~~e~~~inp~gkVPvLvd~n~G~~I~ES~ 207 (274)
+.-|...+||+|++-.-.|.+ +|+.+--+.+.. +....-..|.+..+. .+|++.+ .+..-.+..
T Consensus 43 lv~fwAswC~~C~~e~p~L~~l~~~~~~~g~~vvgv~~~~~~~~e~d~~e~~~~f~~~~~~-~fpvl~d--~~v~g~~~~ 119 (199)
T PTZ00056 43 MITNSASKCGLTKKHVDQMNRLHSVFNPLGLEILAFPTSQFLNQEFPNTKDIRKFNDKNKI-KYNFFEP--IEVNGENTH 119 (199)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHHHhcCceEEEEecchhccCCCCCCHHHHHHHHHHcCC-Cceeeee--eeccCCccC
Confidence 444555899999974433332 344443333321 111122344444433 6888864 111112345
Q ss_pred HHHHHHhhhc
Q 024010 208 NIIKYLVGKY 217 (274)
Q Consensus 208 aIi~YL~~~y 217 (274)
.+..||.+..
T Consensus 120 ~l~~~l~~~~ 129 (199)
T PTZ00056 120 ELFKFLKANC 129 (199)
T ss_pred HHHHHHHHhC
Confidence 6677776443
No 221
>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.
Probab=45.42 E-value=53 Score=30.52 Aligned_cols=111 Identities=14% Similarity=0.162 Sum_probs=57.9
Q ss_pred hhhcccchhhccCCcceeccCCCCCCc-cccccccCccccccccC------CC--CCCCCeEEEEcCCCccHHHH----H
Q 024010 90 LFFRFGTGVFVSGYSASFVSKDEIPPD-QYTLEIAGFKVKETSKL------GP--RPEKPIEIYEYESCPFCRKV----R 156 (274)
Q Consensus 90 ~~~r~g~G~~~~g~~~~lv~~~~~~~~-~yal~~~g~r~~r~s~l------~~--~~~~~l~LY~~~~cP~CrkV----r 156 (274)
-++.+=...|..-|...+....++... ++...-+|++.+....- .. ...-.+.+|....||+|.+- +
T Consensus 94 ~~~~dka~~Fa~~~~~v~l~~PeLdy~l~~P~~~~a~~~~~~~~~~~~~~~i~~la~~~gL~fFy~~~C~~C~~~apil~ 173 (256)
T TIGR02739 94 RFWTKQSSQFSMTWQKALLAHPELDYTLTHPTSNAARQVYLQLEKEQKEKAIQQLSQSYGLFFFYRGKSPISQKMAPVIQ 173 (256)
T ss_pred HHHHHHHHHHHHHHHHHHhhCCCCCccccCCccHHHHHHHHHHHHHHHHHHHHHHHhceeEEEEECCCCchhHHHHHHHH
Confidence 345556677777777666655555322 11123334433332110 01 12234667777889999964 4
Q ss_pred HHHHHcCCCeEEEEcCCCC-CC---Ch--hHHHhhCCCCceeEEE--EcCCC
Q 024010 157 EIVAVLDLDVLYYPCPRNG-PN---FR--PKVLQMGGKKQFPYMV--DPNTG 200 (274)
Q Consensus 157 ~~L~e~gI~ye~~~v~~~~-~~---~~--~e~~~inp~gkVPvLv--d~n~G 200 (274)
.+-+..|+++..+.++..+ +. .+ ....+.-+-..+|+|+ +++++
T Consensus 174 ~fa~~ygi~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~~Pal~Lv~~~t~ 225 (256)
T TIGR02739 174 AFAKEYGISVIPISVDGTLIPGLPNSRSDSGQAQHLGVKYFPALYLVNPKSQ 225 (256)
T ss_pred HHHHHhCCeEEEEecCCCCCCCCCCccCChHHHHhcCCccCceEEEEECCCC
Confidence 4556788887777664221 11 11 1222333456799984 45444
No 222
>cd02958 UAS UAS family; UAS is a domain of unknown function. Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),
Probab=45.06 E-value=1.1e+02 Score=23.68 Aligned_cols=63 Identities=16% Similarity=0.309 Sum_probs=35.6
Q ss_pred CeEEE-EcCCCccHHHHHH-HHHH------cCCCeEEEEcCCCCCCChhHHHhhCCCCceeEEE--EcCCCcee
Q 024010 140 PIEIY-EYESCPFCRKVRE-IVAV------LDLDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMV--DPNTGVSM 203 (274)
Q Consensus 140 ~l~LY-~~~~cP~CrkVr~-~L~e------~gI~ye~~~v~~~~~~~~~e~~~inp~gkVPvLv--d~n~G~~I 203 (274)
.+-|| +.++|++|.+... .+.. .+-.|....+..+.+ ...++....+...+|.++ ++.+|..+
T Consensus 19 ~llv~~~~~~c~~c~~~~~~vl~~~~v~~~l~~~~v~~~~d~~~~-e~~~~~~~~~~~~~P~~~~i~~~~g~~l 91 (114)
T cd02958 19 WLLVYLQSEDEFDSQVLNRDLWSNESVKEFIRENFIFWQCDIDSS-EGQRFLQSYKVDKYPHIAIIDPRTGEVL 91 (114)
T ss_pred eEEEEEecCCcchHHHHHHHHcCCHHHHHHHHhCEEEEEecCCCc-cHHHHHHHhCccCCCeEEEEeCccCcEe
Confidence 34444 5589999997532 2322 222355554433222 355788888888999994 44245433
No 223
>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2
Probab=44.93 E-value=1.1e+02 Score=24.94 Aligned_cols=71 Identities=8% Similarity=0.098 Sum_probs=41.1
Q ss_pred eEEEEcCCCcc--HHH--HH--------HHHHHcCCCeEEEEcCCCCCCChhHHHhhCCCCceeEEEEcCCCcee-----
Q 024010 141 IEIYEYESCPF--CRK--VR--------EIVAVLDLDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMVDPNTGVSM----- 203 (274)
Q Consensus 141 l~LY~~~~cP~--Crk--Vr--------~~L~e~gI~ye~~~v~~~~~~~~~e~~~inp~gkVPvLvd~n~G~~I----- 203 (274)
+..|.-.+|+. |+. .. ..|+..++.+-.+++.. .+++.+..+-..+|+|+.=.+|..+
T Consensus 31 vv~f~a~wc~p~~Ck~~~~~p~~~~~aa~~l~~~~v~~~kVD~d~-----~~~La~~~~I~~iPTl~lfk~G~~v~~~G~ 105 (120)
T cd03065 31 LLYHEPVESDKEAQKQFQMEELVLELAAQVLEDKGIGFGLVDSKK-----DAKVAKKLGLDEEDSIYVFKDDEVIEYDGE 105 (120)
T ss_pred EEEECCCcCChhhChhhcchhhHHHHHHHHhhcCCCEEEEEeCCC-----CHHHHHHcCCccccEEEEEECCEEEEeeCC
Confidence 34444466665 972 22 22234466666666532 3578888888999999531155422
Q ss_pred eCHHHHHHHHhhh
Q 024010 204 YESDNIIKYLVGK 216 (274)
Q Consensus 204 ~ES~aIi~YL~~~ 216 (274)
.....|.+||.+.
T Consensus 106 ~~~~~l~~~l~~~ 118 (120)
T cd03065 106 FAADTLVEFLLDL 118 (120)
T ss_pred CCHHHHHHHHHHH
Confidence 1346777777754
No 224
>COG2761 FrnE Predicted dithiol-disulfide isomerase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=44.71 E-value=32 Score=31.49 Aligned_cols=29 Identities=21% Similarity=0.596 Sum_probs=19.9
Q ss_pred CCCeEEEEcCCCccHH----HHHHHHHHcCCCe
Q 024010 138 EKPIEIYEYESCPFCR----KVREIVAVLDLDV 166 (274)
Q Consensus 138 ~~~l~LY~~~~cP~Cr----kVr~~L~e~gI~y 166 (274)
+..|.+|....||||. +...++.+.+-.+
T Consensus 5 ~i~I~v~sD~vCPwC~ig~~rL~ka~~~~~~~~ 37 (225)
T COG2761 5 KIEIDVFSDVVCPWCYIGKRRLEKALAEYPQEV 37 (225)
T ss_pred eEEEEEEeCCcCchhhcCHHHHHHHHHhcCcce
Confidence 3567788889999998 4445555666333
No 225
>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors. RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.
Probab=44.09 E-value=93 Score=26.26 Aligned_cols=20 Identities=10% Similarity=0.149 Sum_probs=14.6
Q ss_pred EEEEcCCCccHHHHHHHHHH
Q 024010 142 EIYEYESCPFCRKVREIVAV 161 (274)
Q Consensus 142 ~LY~~~~cP~CrkVr~~L~e 161 (274)
..|.-.+||.|++..-.|.+
T Consensus 30 L~FwAsWCppCr~e~P~L~~ 49 (146)
T cd03008 30 LFFGAVVSPQCQLFAPKLKD 49 (146)
T ss_pred EEEECCCChhHHHHHHHHHH
Confidence 33444899999998877754
No 226
>COG5515 Uncharacterized conserved small protein [Function unknown]
Probab=43.23 E-value=17 Score=26.90 Aligned_cols=23 Identities=17% Similarity=0.660 Sum_probs=17.7
Q ss_pred CCeEEEEc----CCCccHHHHHHHHHH
Q 024010 139 KPIEIYEY----ESCPFCRKVREIVAV 161 (274)
Q Consensus 139 ~~l~LY~~----~~cP~CrkVr~~L~e 161 (274)
|+++||-| ..+.||.||-.+|.+
T Consensus 1 ~~mKLYRfiTGpDDssFChrvta~LN~ 27 (70)
T COG5515 1 MKMKLYRFITGPDDSSFCHRVTAALNK 27 (70)
T ss_pred CcceeeEeecCCchHHHHHHHHHHHhC
Confidence 45777877 467899999988864
No 227
>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent. This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.
Probab=43.18 E-value=1e+02 Score=31.10 Aligned_cols=53 Identities=15% Similarity=0.222 Sum_probs=30.1
Q ss_pred CeEEEEcCCCccHHHHHHHHHH-----c--CCCeEEEEcCCCCCCChhHHHhhCCCCceeEEE
Q 024010 140 PIEIYEYESCPFCRKVREIVAV-----L--DLDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMV 195 (274)
Q Consensus 140 ~l~LY~~~~cP~CrkVr~~L~e-----~--gI~ye~~~v~~~~~~~~~e~~~inp~gkVPvLv 195 (274)
-+..|+-++|++|+...-.+++ . ++.+-.++++.+ ......+...-..+|.++
T Consensus 374 VLV~FyApWC~~Ck~m~P~~eelA~~~~~~~v~~~kVdvD~~---~~~~~~~~~~I~~~PTii 433 (463)
T TIGR00424 374 WLVVLYAPWCPFCQAMEASYLELAEKLAGSGVKVAKFRADGD---QKEFAKQELQLGSFPTIL 433 (463)
T ss_pred EEEEEECCCChHHHHHHHHHHHHHHHhccCCcEEEEEECCCC---ccHHHHHHcCCCccceEE
Confidence 3566777999999977655433 2 244444444321 112222345556899884
No 228
>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.
Probab=42.20 E-value=76 Score=23.07 Aligned_cols=22 Identities=18% Similarity=0.274 Sum_probs=15.3
Q ss_pred CeEEEEcCCCccHHHHHHHHHH
Q 024010 140 PIEIYEYESCPFCRKVREIVAV 161 (274)
Q Consensus 140 ~l~LY~~~~cP~CrkVr~~L~e 161 (274)
.+..|...+|+.|.+....+..
T Consensus 22 ~ll~f~~~~C~~C~~~~~~l~~ 43 (116)
T cd02966 22 VLVNFWASWCPPCRAEMPELEA 43 (116)
T ss_pred EEEEeecccChhHHHHhHHHHH
Confidence 3566667899999976655543
No 229
>PTZ00102 disulphide isomerase; Provisional
Probab=40.39 E-value=40 Score=32.75 Aligned_cols=74 Identities=11% Similarity=0.086 Sum_probs=38.6
Q ss_pred CeEEEEcCCCccHHHHHHHHHHcC--------CCeEEEEcCCCCCCChhHHHhhCCCCceeEEE-EcCCCce--e----e
Q 024010 140 PIEIYEYESCPFCRKVREIVAVLD--------LDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMV-DPNTGVS--M----Y 204 (274)
Q Consensus 140 ~l~LY~~~~cP~CrkVr~~L~e~g--------I~ye~~~v~~~~~~~~~e~~~inp~gkVPvLv-d~n~G~~--I----~ 204 (274)
-+..|+.+||+.|++..-.+.+.. +.+-.+++..+ +...+...-..+|.++ .++++.+ . .
T Consensus 378 vlv~f~a~wC~~C~~~~p~~~~~a~~~~~~~~v~~~~id~~~~-----~~~~~~~~v~~~Pt~~~~~~~~~~~~~~~G~~ 452 (477)
T PTZ00102 378 VLLEIYAPWCGHCKNLEPVYNELGEKYKDNDSIIVAKMNGTAN-----ETPLEEFSWSAFPTILFVKAGERTPIPYEGER 452 (477)
T ss_pred EEEEEECCCCHHHHHHHHHHHHHHHHhccCCcEEEEEEECCCC-----ccchhcCCCcccCeEEEEECCCcceeEecCcC
Confidence 355666699999998876665432 22222232221 1122233345788884 2324432 1 1
Q ss_pred CHHHHHHHHhhhcC
Q 024010 205 ESDNIIKYLVGKYG 218 (274)
Q Consensus 205 ES~aIi~YL~~~y~ 218 (274)
....|.++|.+...
T Consensus 453 ~~~~l~~~i~~~~~ 466 (477)
T PTZ00102 453 TVEGFKEFVNKHAT 466 (477)
T ss_pred CHHHHHHHHHHcCC
Confidence 24667777776543
No 230
>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein. QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.
Probab=40.29 E-value=69 Score=25.23 Aligned_cols=54 Identities=15% Similarity=0.162 Sum_probs=31.2
Q ss_pred CeEEEEcCCCccHHHHHHHHHHcC---------CCeEEEEcCCCCCCChhHHHhhCCCCceeEEEE
Q 024010 140 PIEIYEYESCPFCRKVREIVAVLD---------LDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMVD 196 (274)
Q Consensus 140 ~l~LY~~~~cP~CrkVr~~L~e~g---------I~ye~~~v~~~~~~~~~e~~~inp~gkVPvLvd 196 (274)
-+..|+.++|+.|+...-.+.... +.+-.+++.. ....++.+..+-..+|.++.
T Consensus 22 vvV~f~a~wC~~C~~~~~~~~~la~~~~~~~~~v~~~~vd~~~---~~~~~~~~~~~i~~~Pt~~l 84 (114)
T cd02992 22 WLVEFYASWCGHCRAFAPTWKKLARDLRKWRPVVRVAAVDCAD---EENVALCRDFGVTGYPTLRY 84 (114)
T ss_pred EEEEEECCCCHHHHHHhHHHHHHHHHHHhcCCceEEEEEeccc---hhhHHHHHhCCCCCCCEEEE
Confidence 456677799999997665543321 2232333311 12345666666678898853
No 231
>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1. Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.
Probab=40.09 E-value=44 Score=27.40 Aligned_cols=50 Identities=12% Similarity=0.165 Sum_probs=32.4
Q ss_pred eEEEEcCCCccHHHHHHHHHHcCCC------eEEEEcCCCCCCChhHHHhhCCCCceeEEE
Q 024010 141 IEIYEYESCPFCRKVREIVAVLDLD------VLYYPCPRNGPNFRPKVLQMGGKKQFPYMV 195 (274)
Q Consensus 141 l~LY~~~~cP~CrkVr~~L~e~gI~------ye~~~v~~~~~~~~~e~~~inp~gkVPvLv 195 (274)
+.=|+..||+.|+..-..|.+.--. |-.++++ .-+++.+..+-...|+.+
T Consensus 18 VVdF~a~WC~pCk~mdp~l~ela~~~~~~~~f~kVDVD-----ev~dva~~y~I~amPtfv 73 (114)
T cd02986 18 VLRFGRDEDAVCLQLDDILSKTSHDLSKMASIYLVDVD-----KVPVYTQYFDISYIPSTI 73 (114)
T ss_pred EEEEeCCCChhHHHHHHHHHHHHHHccCceEEEEEecc-----ccHHHHHhcCceeCcEEE
Confidence 3445669999999988777764433 3333332 245788877776678774
No 232
>KOG3425 consensus Uncharacterized conserved protein [Function unknown]
Probab=39.58 E-value=84 Score=26.34 Aligned_cols=70 Identities=17% Similarity=0.185 Sum_probs=40.4
Q ss_pred CCCccHHHHH----HHHHHcCCCeEEEEcCC-CCCCC---hhHHHhhCCC-CceeEEEE-cCCCceeeCHHHHHHHHhhh
Q 024010 147 ESCPFCRKVR----EIVAVLDLDVLYYPCPR-NGPNF---RPKVLQMGGK-KQFPYMVD-PNTGVSMYESDNIIKYLVGK 216 (274)
Q Consensus 147 ~~cP~CrkVr----~~L~e~gI~ye~~~v~~-~~~~~---~~e~~~inp~-gkVPvLvd-~n~G~~I~ES~aIi~YL~~~ 216 (274)
.|||.|+++- .+|+....++..+.|.- +.+.+ ...|++-... .-||.|+- .+.+..+.|......+|.+.
T Consensus 43 SWCPdCV~AEPvi~~alk~ap~~~~~v~v~VG~rp~Wk~p~n~FR~d~~~lt~vPTLlrw~~~~~rL~~~q~~~~~Lve~ 122 (128)
T KOG3425|consen 43 SWCPDCVAAEPVINEALKHAPEDVHFVHVYVGNRPYWKDPANPFRKDPGILTAVPTLLRWKRQPQRLDGLQCLNDHLVEM 122 (128)
T ss_pred cCCchHHHhhHHHHHHHHhCCCceEEEEEEecCCCcccCCCCccccCCCceeecceeeEEcCccccchHhHhhHHHHHHH
Confidence 4899999764 56666666655554421 11111 1235443333 57899963 22455777777777777654
No 233
>KOG0907 consensus Thioredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=38.11 E-value=32 Score=27.46 Aligned_cols=54 Identities=17% Similarity=0.147 Sum_probs=34.5
Q ss_pred EEcCCCccHHHHHHHHHHcC-----CCeEEEEcCCCCCCChhHHHhhCCCCceeEEEEcCCCce
Q 024010 144 YEYESCPFCRKVREIVAVLD-----LDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMVDPNTGVS 202 (274)
Q Consensus 144 Y~~~~cP~CrkVr~~L~e~g-----I~ye~~~v~~~~~~~~~e~~~inp~gkVPvLvd~n~G~~ 202 (274)
|+-.||+.|+...=.+.++- +.|-.++++. -.++.+...-..+|.++.-.+|..
T Consensus 28 F~a~wCgPCk~i~P~~~~La~~y~~v~Flkvdvde-----~~~~~~~~~V~~~PTf~f~k~g~~ 86 (106)
T KOG0907|consen 28 FYATWCGPCKAIAPKFEKLAEKYPDVVFLKVDVDE-----LEEVAKEFNVKAMPTFVFYKGGEE 86 (106)
T ss_pred EECCCCcchhhhhhHHHHHHHHCCCCEEEEEeccc-----CHhHHHhcCceEeeEEEEEECCEE
Confidence 45589999998876665543 3344444432 456777778889999953125543
No 234
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=36.88 E-value=52 Score=25.24 Aligned_cols=50 Identities=26% Similarity=0.420 Sum_probs=25.2
Q ss_pred CCCccHHHHHHHHHH-----cCCCeEEEEcCCCCCCChhHHHhhCCCCceeEEEEc
Q 024010 147 ESCPFCRKVREIVAV-----LDLDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMVDP 197 (274)
Q Consensus 147 ~~cP~CrkVr~~L~e-----~gI~ye~~~v~~~~~~~~~e~~~inp~gkVPvLvd~ 197 (274)
.+||.|.+....|.+ ....+..+-|..+....-.++.+..+ -.+|++.|+
T Consensus 36 ~~c~~c~~~l~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~-~~~~~~~D~ 90 (124)
T PF00578_consen 36 AWCPFCQAELPELNELYKKYKDKGVQVIGISTDDPEEIKQFLEEYG-LPFPVLSDP 90 (124)
T ss_dssp TTSHHHHHHHHHHHHHHHHHHTTTEEEEEEESSSHHHHHHHHHHHT-CSSEEEEET
T ss_pred cCccccccchhHHHHHhhhhccceEEeeecccccccchhhhhhhhc-cccccccCc
Confidence 379999876654443 22234444442222211233443333 577888773
No 235
>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells. It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.
Probab=36.13 E-value=1.8e+02 Score=23.64 Aligned_cols=79 Identities=14% Similarity=0.124 Sum_probs=44.4
Q ss_pred CCCeEEEEc--CCCc---cHHHHHHHHHHc--CCCeEEEEcCCCCCCChhHHHhhCCCC--ceeEEE-EcCCC--c-eee
Q 024010 138 EKPIEIYEY--ESCP---FCRKVREIVAVL--DLDVLYYPCPRNGPNFRPKVLQMGGKK--QFPYMV-DPNTG--V-SMY 204 (274)
Q Consensus 138 ~~~l~LY~~--~~cP---~CrkVr~~L~e~--gI~ye~~~v~~~~~~~~~e~~~inp~g--kVPvLv-d~n~G--~-~I~ 204 (274)
.--|+-|.- ++|. .|.+........ .|-+-.++|...++....++.+..+-. ..|+|. -.|++ . ..+
T Consensus 19 ~~vlV~F~A~~Pwc~k~~~~~~LA~e~~~aa~~v~lakVd~~d~~~~~~~~L~~~y~I~~~gyPTl~lF~~g~~~~~~~Y 98 (116)
T cd03007 19 KYSLVKFDTAYPYGEKHEAFTRLAESSASATDDLLVAEVGIKDYGEKLNMELGERYKLDKESYPVIYLFHGGDFENPVPY 98 (116)
T ss_pred CcEEEEEeCCCCCCCChHHHHHHHHHHHhhcCceEEEEEecccccchhhHHHHHHhCCCcCCCCEEEEEeCCCcCCCccC
Confidence 334666666 7887 777766444443 355555565332332345677766665 799884 23232 1 222
Q ss_pred C-----HHHHHHHHhhh
Q 024010 205 E-----SDNIIKYLVGK 216 (274)
Q Consensus 205 E-----S~aIi~YL~~~ 216 (274)
+ .++|+.|+.++
T Consensus 99 ~G~~r~~~~lv~~v~~~ 115 (116)
T cd03007 99 SGADVTVDALQRFLKGN 115 (116)
T ss_pred CCCcccHHHHHHHHHhc
Confidence 2 46788887654
No 236
>PRK15412 thiol:disulfide interchange protein DsbE; Provisional
Probab=35.84 E-value=72 Score=27.33 Aligned_cols=54 Identities=15% Similarity=0.203 Sum_probs=27.1
Q ss_pred eEEEEcCCCccHHHHHHHHH---HcCCCeEEEEcCCCCCCChhHHHhhCCCCceeE-EEE
Q 024010 141 IEIYEYESCPFCRKVREIVA---VLDLDVLYYPCPRNGPNFRPKVLQMGGKKQFPY-MVD 196 (274)
Q Consensus 141 l~LY~~~~cP~CrkVr~~L~---e~gI~ye~~~v~~~~~~~~~e~~~inp~gkVPv-Lvd 196 (274)
+..|...+||+|++-.-.|. ++|+.+--+.+. ++...-.+|.+..+. ..|+ +.|
T Consensus 72 vv~FwatwC~~C~~e~p~l~~l~~~~~~vi~v~~~-~~~~~~~~~~~~~~~-~~~~~~~D 129 (185)
T PRK15412 72 LLNVWATWCPTCRAEHQYLNQLSAQGIRVVGMNYK-DDRQKAISWLKELGN-PYALSLFD 129 (185)
T ss_pred EEEEECCCCHHHHHHHHHHHHHHHcCCEEEEEECC-CCHHHHHHHHHHcCC-CCceEEEc
Confidence 44455689999998655543 345544333322 122222345555443 3453 444
No 237
>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE. AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.
Probab=35.65 E-value=69 Score=25.63 Aligned_cols=50 Identities=16% Similarity=0.138 Sum_probs=25.1
Q ss_pred cCCCccHHHHHHHHHHc-----CCCeEEEEcCCCCCCChhHHHhhCCCCceeEEEE
Q 024010 146 YESCPFCRKVREIVAVL-----DLDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMVD 196 (274)
Q Consensus 146 ~~~cP~CrkVr~~L~e~-----gI~ye~~~v~~~~~~~~~e~~~inp~gkVPvLvd 196 (274)
..+||.|.+....|.+. +..+..+-|..+......+|.+..+ ..+|++.|
T Consensus 38 ~~~c~~C~~~~~~l~~~~~~~~~~~v~vi~vs~d~~~~~~~~~~~~~-~~~~~~~D 92 (149)
T cd03018 38 LAFTPVCTKELCALRDSLELFEAAGAEVLGISVDSPFSLRAWAEENG-LTFPLLSD 92 (149)
T ss_pred CCCCccHHHHHHHHHHHHHHHHhCCCEEEEecCCCHHHHHHHHHhcC-CCceEecC
Confidence 46899999655444331 1223444443222222344555444 36777665
No 238
>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified. PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a
Probab=35.55 E-value=55 Score=25.78 Aligned_cols=56 Identities=16% Similarity=0.210 Sum_probs=30.4
Q ss_pred CeEEEEc--CCCccHHHHHHHHHH-------cCCCeEEEEcCCCCCCChhHHHhhCCCCceeEEEEc
Q 024010 140 PIEIYEY--ESCPFCRKVREIVAV-------LDLDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMVDP 197 (274)
Q Consensus 140 ~l~LY~~--~~cP~CrkVr~~L~e-------~gI~ye~~~v~~~~~~~~~e~~~inp~gkVPvLvd~ 197 (274)
.+.|+.+ .+|+.|.+....|.+ .|+ ..+-|..+.......|.+..+...+|+|.|+
T Consensus 24 ~~ll~f~~~~~c~~C~~~~~~l~~~~~~~~~~~~--~~i~is~d~~~~~~~~~~~~~~~~~~~l~D~ 88 (140)
T cd02971 24 WVVLFFYPKDFTPVCTTELCAFRDLAEEFAKGGA--EVLGVSVDSPFSHKAWAEKEGGLNFPLLSDP 88 (140)
T ss_pred eEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCC--EEEEEeCCCHHHHHHHHhcccCCCceEEECC
Confidence 3445444 589999975444433 444 4444432222223455555545678888763
No 239
>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides. The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w
Probab=32.47 E-value=55 Score=25.84 Aligned_cols=54 Identities=22% Similarity=0.358 Sum_probs=28.1
Q ss_pred eEEEEc--CCCccHHHHHHHH-------HHcCCCeEEEEcCCCCCCChhHHHhhCCCCceeEEEEc
Q 024010 141 IEIYEY--ESCPFCRKVREIV-------AVLDLDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMVDP 197 (274)
Q Consensus 141 l~LY~~--~~cP~CrkVr~~L-------~e~gI~ye~~~v~~~~~~~~~e~~~inp~gkVPvLvd~ 197 (274)
+.|+.+ .+||.|.+....| ..+|+ +.+-|..+....-.+|.+..+. .+|++.|+
T Consensus 26 ~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~--~vv~is~d~~~~~~~~~~~~~~-~~~~l~D~ 88 (140)
T cd03017 26 VVLYFYPKDDTPGCTKEACDFRDLYEEFKALGA--VVIGVSPDSVESHAKFAEKYGL-PFPLLSDP 88 (140)
T ss_pred EEEEEeCCCCCCchHHHHHHHHHHHHHHHHCCC--EEEEEcCCCHHHHHHHHHHhCC-CceEEECC
Confidence 444443 5799998643332 33454 4444433222223455555543 57877763
No 240
>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626. This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.
Probab=31.04 E-value=2.1e+02 Score=25.19 Aligned_cols=47 Identities=4% Similarity=-0.009 Sum_probs=29.0
Q ss_pred ccccc--cccCccccccccCCCCCCCCeEE--EEcCCCccHHHH---HHHHHHcCCCe
Q 024010 116 DQYTL--EIAGFKVKETSKLGPRPEKPIEI--YEYESCPFCRKV---REIVAVLDLDV 166 (274)
Q Consensus 116 ~~yal--~~~g~r~~r~s~l~~~~~~~l~L--Y~~~~cP~CrkV---r~~L~e~gI~y 166 (274)
||..+ ..+.-+.|..+.+ ..++.| |.--+|+.|+.= ...|+.+|+++
T Consensus 38 ge~~~~~~~~~y~~~~~~~l----~GKV~lvn~~Aswc~~c~~e~P~l~~l~~~~~~~ 91 (184)
T TIGR01626 38 GEIVLSGKDTVYQPWGSAEL----AGKVRVVHHIAGRTSAKEXNASLIDAIKAAKFPP 91 (184)
T ss_pred ceEEEcCCcccceeccHHHc----CCCEEEEEEEecCCChhhccchHHHHHHHcCCCc
Confidence 55555 3444555665555 244444 444699999954 45667788888
No 241
>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w
Probab=30.53 E-value=58 Score=24.26 Aligned_cols=54 Identities=13% Similarity=0.155 Sum_probs=33.0
Q ss_pred CeEEEEcCCCccHHHHHHHHHHcCCC----eEEEEcCCCCCCChhHHHhhCCCC--ceeEEEE
Q 024010 140 PIEIYEYESCPFCRKVREIVAVLDLD----VLYYPCPRNGPNFRPKVLQMGGKK--QFPYMVD 196 (274)
Q Consensus 140 ~l~LY~~~~cP~CrkVr~~L~e~gI~----ye~~~v~~~~~~~~~e~~~inp~g--kVPvLvd 196 (274)
-+.+|..++|+.|...+..+++..-. +....++. +. .+.+.+..+-. .+|+++.
T Consensus 15 ~~~~f~~~~~~~~~~~~~~~~~vA~~~~~~v~f~~vd~--~~-~~~~~~~~~i~~~~~P~~~~ 74 (103)
T cd02982 15 LLVLFYNKDDSESEELRERFKEVAKKFKGKLLFVVVDA--DD-FGRHLEYFGLKEEDLPVIAI 74 (103)
T ss_pred EEEEEEcCChhhHHHHHHHHHHHHHHhCCeEEEEEEch--Hh-hHHHHHHcCCChhhCCEEEE
Confidence 35667778999999988887663322 33333322 11 23466655555 8999953
No 242
>smart00594 UAS UAS domain.
Probab=30.40 E-value=2.8e+02 Score=22.00 Aligned_cols=56 Identities=18% Similarity=0.346 Sum_probs=31.4
Q ss_pred eEEEEcCCCccHHHHH----------HHHHHcCCCeEEEEcCCCCCCChhHHHhhCCCCceeEEE--EcCCC
Q 024010 141 IEIYEYESCPFCRKVR----------EIVAVLDLDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMV--DPNTG 200 (274)
Q Consensus 141 l~LY~~~~cP~CrkVr----------~~L~e~gI~ye~~~v~~~~~~~~~e~~~inp~gkVPvLv--d~n~G 200 (274)
+..++.++|++|.+.. .++.. .|-...++.... ...++.......++|.++ ++++|
T Consensus 31 lv~~~~~~c~~c~~~~r~vl~~~~V~~~i~~---~fv~~~~dv~~~-eg~~l~~~~~~~~~P~~~~l~~~~g 98 (122)
T smart00594 31 WLYLHSQDSPDSQVFNRDVLCNEAVKSLIRE---NFIFWQVDVDTS-EGQRVSQFYKLDSFPYVAIVDPRTG 98 (122)
T ss_pred EEEEeCCCCchHHHHHHHHccCHHHHHHHHc---CEEEEEecCCCh-hHHHHHHhcCcCCCCEEEEEecCCC
Confidence 4455668999998633 33332 354433332222 134566666667899993 55554
No 243
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=30.00 E-value=75 Score=25.04 Aligned_cols=55 Identities=11% Similarity=0.012 Sum_probs=27.5
Q ss_pred eEEEEcCCCccHHHHHHHHHH-----cCCCeEEEEcCC---CCCCCh---hHHHhhCCCCceeEEEE
Q 024010 141 IEIYEYESCPFCRKVREIVAV-----LDLDVLYYPCPR---NGPNFR---PKVLQMGGKKQFPYMVD 196 (274)
Q Consensus 141 l~LY~~~~cP~CrkVr~~L~e-----~gI~ye~~~v~~---~~~~~~---~e~~~inp~gkVPvLvd 196 (274)
+..|...+||+|++-.-.|.+ ++..+..+-|.. ..+... .+|.+.++ -.+|++.|
T Consensus 27 vl~F~a~~C~~C~~~~p~l~~l~~~~~~~~~~vi~i~~~~~~~~~~~~~~~~~~~~~~-~~~p~~~D 92 (126)
T cd03012 27 LLDFWTYCCINCLHTLPYLTDLEQKYKDDGLVVIGVHSPEFAFERDLANVKSAVLRYG-ITYPVAND 92 (126)
T ss_pred EEEEECCCCccHHHHHHHHHHHHHHcCcCCeEEEEeccCccccccCHHHHHHHHHHcC-CCCCEEEC
Confidence 344445799999976544433 223345544421 111112 23444433 36887776
No 244
>cd05295 MDH_like Malate dehydrogenase-like. These MDH-like proteins are related to other groups in the MDH family but do not have conserved substrate and cofactor binding residues. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subgroup are uncharacterized MDH-like proteins from animals. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=29.87 E-value=98 Score=31.19 Aligned_cols=74 Identities=18% Similarity=0.349 Sum_probs=53.2
Q ss_pred CCCccHHHHHHHHHHcC--CC-eEEEEcCCCCCCChhHHHhh---CC--CCceeEEE----Ec-CCCceeeCHHHHHHHH
Q 024010 147 ESCPFCRKVREIVAVLD--LD-VLYYPCPRNGPNFRPKVLQM---GG--KKQFPYMV----DP-NTGVSMYESDNIIKYL 213 (274)
Q Consensus 147 ~~cP~CrkVr~~L~e~g--I~-ye~~~v~~~~~~~~~e~~~i---np--~gkVPvLv----d~-n~G~~I~ES~aIi~YL 213 (274)
..|||-.|+-++..++. ++ |.++-|.+..+.+.+++.++ |+ .++-|++. |. ..|..|++..+-++|.
T Consensus 2 ~~cp~ya~~ellad~l~~~l~~f~~~ki~~~p~~w~~wl~~~c~~~~w~~~~spiiwrel~~rggkg~l~gg~~~f~e~~ 81 (452)
T cd05295 2 ADCPYYAKAELLADYLQKNLPDFRVHKIVKHPDEWEDWLQDLCKKNGWSHKRSPIIWRELLDRGGKGLLLGGCNEFLEYA 81 (452)
T ss_pred CCCchhHHHHHHHHHHHhhCCCceEEEccCChHHHHHHHHHHHHhcCCccCCCCeeHHHHHhcCCCceEecChHHHHHHH
Confidence 37999999999998754 43 77777755444455555543 44 35889983 43 2346899999999999
Q ss_pred hhhcCCC
Q 024010 214 VGKYGDG 220 (274)
Q Consensus 214 ~~~y~~~ 220 (274)
...||..
T Consensus 82 ~~yyg~~ 88 (452)
T cd05295 82 ESYYGIT 88 (452)
T ss_pred HHHhCcc
Confidence 9999964
No 245
>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis. It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=29.40 E-value=42 Score=29.54 Aligned_cols=55 Identities=13% Similarity=0.202 Sum_probs=31.9
Q ss_pred eEEEEcCCCccHHHHHHHHHHcC-----CCeEEEEcCCCCCCChhHHHhhCCCCceeEEEEcCCCcee
Q 024010 141 IEIYEYESCPFCRKVREIVAVLD-----LDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMVDPNTGVSM 203 (274)
Q Consensus 141 l~LY~~~~cP~CrkVr~~L~e~g-----I~ye~~~v~~~~~~~~~e~~~inp~gkVPvLvd~n~G~~I 203 (274)
+..|+.++|+.|+.+.-.|..+- +.|-.+++. ......+-..+|+|+.=.+|..+
T Consensus 106 VV~Fya~wc~~C~~m~~~l~~LA~k~~~vkFvkI~ad--------~~~~~~~i~~lPTlliyk~G~~v 165 (192)
T cd02988 106 VVHLYKDGIPLCRLLNQHLSELARKFPDTKFVKIIST--------QCIPNYPDKNLPTILVYRNGDIV 165 (192)
T ss_pred EEEEECCCCchHHHHHHHHHHHHHHCCCCEEEEEEhH--------HhHhhCCCCCCCEEEEEECCEEE
Confidence 34455699999998876665432 333333321 12345677799999542256533
No 246
>PF06953 ArsD: Arsenical resistance operon trans-acting repressor ArsD; InterPro: IPR010712 This family consists of several bacterial arsenical resistance operon trans-acting repressor ArsD proteins. ArsD is a trans-acting repressor of the arsRDABC operon that confers resistance to arsenicals and antimonials in Escherichia coli. It possesses two-pairs of vicinal cysteine residues, Cys(12)-Cys(13) and Cys(112)-Cys(113), that potentially form separate binding sites for the metalloids that trigger dissociation of ArsD from the operon. However, as a homodimer it has four vicinal cysteine pairs [].; GO: 0003677 DNA binding, 0045892 negative regulation of transcription, DNA-dependent, 0046685 response to arsenic-containing substance; PDB: 3MWH_A 3KGK_A 3KTB_B.
Probab=28.90 E-value=1.2e+02 Score=25.04 Aligned_cols=63 Identities=24% Similarity=0.312 Sum_probs=35.3
Q ss_pred CCCeEEEEcCCC-c-----c--------HHHHHHHHHHcCCCeEEEEcCCCCCCC-----hhHHHhhCCCCceeEEEEcC
Q 024010 138 EKPIEIYEYESC-P-----F--------CRKVREIVAVLDLDVLYYPCPRNGPNF-----RPKVLQMGGKKQFPYMVDPN 198 (274)
Q Consensus 138 ~~~l~LY~~~~c-P-----~--------CrkVr~~L~e~gI~ye~~~v~~~~~~~-----~~e~~~inp~gkVPvLvd~n 198 (274)
|++|.||.-..| + . -..+...|+++|++++.+.+..+...+ -.++++..|...+|+.+.
T Consensus 1 M~~i~ifepamCC~tGvCG~~vd~eL~~~a~~~~~Lk~~gv~v~RyNL~~~P~aF~~n~~V~~~L~~~G~e~LPitlV-- 78 (123)
T PF06953_consen 1 MKKIEIFEPAMCCSTGVCGPSVDPELVRFAADLDWLKEQGVEVERYNLAQNPQAFVENPEVNQLLQTEGAEALPITLV-- 78 (123)
T ss_dssp --EEEEEE-S-SSTTS-SSSS--HHHHHHHHHHHHHHHTT-EEEEEETTT-TTHHHHSHHHHHHHHHH-GGG-SEEEE--
T ss_pred CCceEEeccccccccCccCCCCCHHHHHHHHHHHHHHhCCceEEEEccccCHHHHHhCHHHHHHHHHcCcccCCEEEE--
Confidence 567888887653 1 1 113345668899999999875432211 134556678899999988
Q ss_pred CCce
Q 024010 199 TGVS 202 (274)
Q Consensus 199 ~G~~ 202 (274)
||.+
T Consensus 79 dGei 82 (123)
T PF06953_consen 79 DGEI 82 (123)
T ss_dssp TTEE
T ss_pred CCEE
Confidence 6654
No 247
>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate. GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.
Probab=28.56 E-value=88 Score=25.65 Aligned_cols=20 Identities=10% Similarity=0.069 Sum_probs=12.9
Q ss_pred eEEEEcCCCccHHHHHHHHHH
Q 024010 141 IEIYEYESCPFCRKVREIVAV 161 (274)
Q Consensus 141 l~LY~~~~cP~CrkVr~~L~e 161 (274)
+..|...+|| |++-.-.|.+
T Consensus 26 vl~fwatwC~-C~~e~p~l~~ 45 (152)
T cd00340 26 LIVNVASKCG-FTPQYEGLEA 45 (152)
T ss_pred EEEEEcCCCC-chHHHHHHHH
Confidence 3445568999 9875555443
No 248
>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A ....
Probab=27.28 E-value=48 Score=24.31 Aligned_cols=19 Identities=26% Similarity=0.607 Sum_probs=14.5
Q ss_pred eEEEEcCCCccHHHHHHHH
Q 024010 141 IEIYEYESCPFCRKVREIV 159 (274)
Q Consensus 141 l~LY~~~~cP~CrkVr~~L 159 (274)
+..++..+|++|++....+
T Consensus 21 lv~f~a~wC~~C~~l~~~~ 39 (82)
T PF13899_consen 21 LVDFGADWCPPCKKLEREV 39 (82)
T ss_dssp EEEEETTTTHHHHHHHHHT
T ss_pred EEEEECCCCHhHHHHHHHH
Confidence 5666789999999876443
No 249
>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed
Probab=26.68 E-value=1.6e+02 Score=23.85 Aligned_cols=54 Identities=13% Similarity=0.177 Sum_probs=27.6
Q ss_pred CeEEEEc--CCCccHHHH-------HHHHHHcCCCeEEEEcCCCCCCChhHHHhhCCCCceeEEEE
Q 024010 140 PIEIYEY--ESCPFCRKV-------REIVAVLDLDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMVD 196 (274)
Q Consensus 140 ~l~LY~~--~~cP~CrkV-------r~~L~e~gI~ye~~~v~~~~~~~~~e~~~inp~gkVPvLvd 196 (274)
.+.|+-+ .+||.|..- ...++.+|+. .+-|..+....-.+|.+..+ -.+|+|.|
T Consensus 32 ~~ll~f~~~~~~p~C~~~~~~l~~~~~~~~~~~v~--vi~Is~d~~~~~~~~~~~~~-~~~~~l~D 94 (154)
T PRK09437 32 RVLVYFYPKAMTPGCTVQACGLRDNMDELKKAGVV--VLGISTDKPEKLSRFAEKEL-LNFTLLSD 94 (154)
T ss_pred CEEEEEECCCCCCchHHHHHHHHHHHHHHHHCCCE--EEEEcCCCHHHHHHHHHHhC-CCCeEEEC
Confidence 3555544 379999643 3334445554 44443322222344555443 36787766
No 250
>PTZ00062 glutaredoxin; Provisional
Probab=26.53 E-value=2.8e+02 Score=24.73 Aligned_cols=68 Identities=7% Similarity=0.148 Sum_probs=42.0
Q ss_pred eEEEEcCCCccHHHHHHHHHHcCCC---eEEEEcCCCCCCChhHHHhhCCCCceeEEEEcCCCcee-----eCHHHHHHH
Q 024010 141 IEIYEYESCPFCRKVREIVAVLDLD---VLYYPCPRNGPNFRPKVLQMGGKKQFPYMVDPNTGVSM-----YESDNIIKY 212 (274)
Q Consensus 141 l~LY~~~~cP~CrkVr~~L~e~gI~---ye~~~v~~~~~~~~~e~~~inp~gkVPvLvd~n~G~~I-----~ES~aIi~Y 212 (274)
+..|+-+|||.|+.+..+|.+.--+ +....|..+ ..-..||.++.=.+|..| .+...+..+
T Consensus 21 vl~f~a~w~~~C~~m~~vl~~l~~~~~~~~F~~V~~d-----------~~V~~vPtfv~~~~g~~i~r~~G~~~~~~~~~ 89 (204)
T PTZ00062 21 VLYVKSSKEPEYEQLMDVCNALVEDFPSLEFYVVNLA-----------DANNEYGVFEFYQNSQLINSLEGCNTSTLVSF 89 (204)
T ss_pred EEEEeCCCCcchHHHHHHHHHHHHHCCCcEEEEEccc-----------cCcccceEEEEEECCEEEeeeeCCCHHHHHHH
Confidence 4444568999999888887764433 344444221 455588977431155433 346778888
Q ss_pred HhhhcCC
Q 024010 213 LVGKYGD 219 (274)
Q Consensus 213 L~~~y~~ 219 (274)
+.+.++.
T Consensus 90 ~~~~~~~ 96 (204)
T PTZ00062 90 IRGWAQK 96 (204)
T ss_pred HHHHcCC
Confidence 8777764
No 251
>KOG0541 consensus Alkyl hydroperoxide reductase/peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=26.48 E-value=24 Score=30.82 Aligned_cols=36 Identities=11% Similarity=0.208 Sum_probs=28.5
Q ss_pred hhcccchhhccCCcceeccCCCCCCccccccccCccccccccCCC
Q 024010 91 FFRFGTGVFVSGYSASFVSKDEIPPDQYTLEIAGFKVKETSKLGP 135 (274)
Q Consensus 91 ~~r~g~G~~~~g~~~~lv~~~~~~~~~yal~~~g~r~~r~s~l~~ 135 (274)
++-|++|+|+.-++..+ |..+. +.|.|++|+++++.
T Consensus 108 f~aD~~g~ftk~lglel-d~~d~--------~~g~RS~R~a~vve 143 (171)
T KOG0541|consen 108 FVADPAGEFTKSLGLEL-DLSDK--------LLGVRSRRYALVVE 143 (171)
T ss_pred EEecCCCceeeecccee-eeccc--------cCccccccEEEEEe
Confidence 45689999999999954 44455 78999999999854
No 252
>PF06053 DUF929: Domain of unknown function (DUF929); InterPro: IPR009272 This is a family of proteins from the archaeon Sulfolobus, with undetermined function.
Probab=26.44 E-value=49 Score=30.74 Aligned_cols=21 Identities=19% Similarity=0.607 Sum_probs=16.6
Q ss_pred eEEEEcCCCccHHHHHHHHHH
Q 024010 141 IEIYEYESCPFCRKVREIVAV 161 (274)
Q Consensus 141 l~LY~~~~cP~CrkVr~~L~e 161 (274)
+..-.+++||+|..-||+|..
T Consensus 62 v~~igw~gCP~~A~~sW~L~~ 82 (249)
T PF06053_consen 62 VIFIGWEGCPYCAAESWALYI 82 (249)
T ss_pred EEEEecccCccchhhHHHHHH
Confidence 455577999999999987754
No 253
>PLN02399 phospholipid hydroperoxide glutathione peroxidase
Probab=26.11 E-value=1.8e+02 Score=26.60 Aligned_cols=16 Identities=6% Similarity=0.113 Sum_probs=11.4
Q ss_pred eEEEEcCCCccHHHHH
Q 024010 141 IEIYEYESCPFCRKVR 156 (274)
Q Consensus 141 l~LY~~~~cP~CrkVr 156 (274)
+..|...+||+|++-.
T Consensus 103 vl~FwAswCp~c~~e~ 118 (236)
T PLN02399 103 LIVNVASKCGLTSSNY 118 (236)
T ss_pred EEEEEcCCCcchHHHH
Confidence 4555668999998633
No 254
>PTZ00256 glutathione peroxidase; Provisional
Probab=25.97 E-value=1.7e+02 Score=24.95 Aligned_cols=18 Identities=6% Similarity=0.012 Sum_probs=12.4
Q ss_pred EEEEcCCCccHHHHHHHH
Q 024010 142 EIYEYESCPFCRKVREIV 159 (274)
Q Consensus 142 ~LY~~~~cP~CrkVr~~L 159 (274)
.++...+||+|++-.-.|
T Consensus 46 v~n~atwCp~C~~e~p~l 63 (183)
T PTZ00256 46 VVNVACKCGLTSDHYTQL 63 (183)
T ss_pred EEEECCCCCchHHHHHHH
Confidence 445678999999744333
No 255
>COG0526 TrxA Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=25.56 E-value=58 Score=23.09 Aligned_cols=18 Identities=28% Similarity=0.455 Sum_probs=14.2
Q ss_pred EcCCCccHHHHHHHHHHc
Q 024010 145 EYESCPFCRKVREIVAVL 162 (274)
Q Consensus 145 ~~~~cP~CrkVr~~L~e~ 162 (274)
...+||+|++....+.+.
T Consensus 40 ~~~~C~~C~~~~~~l~~~ 57 (127)
T COG0526 40 WAPWCPPCRAEAPLLEEL 57 (127)
T ss_pred EcCcCHHHHhhchhHHHH
Confidence 379999999987777653
No 256
>TIGR01764 excise DNA binding domain, excisionase family. An excisionase, or Xis protein, is a small protein that binds and promotes excisive recombination; it is not enzymatically active. This model represents a number of putative excisionases and related proteins from temperate phage, plasmids, and transposons, as well as DNA binding domains of other proteins, such as a DNA modification methylase. This model identifies mostly small proteins and N-terminal regions of large proteins, but some proteins appear to have two copies. This domain appears similar, in both sequence and predicted secondary structure (PSIPRED) to the MerR family of transcriptional regulators (pfam00376).
Probab=24.00 E-value=1.2e+02 Score=19.23 Aligned_cols=32 Identities=13% Similarity=0.118 Sum_probs=23.9
Q ss_pred HHhhCCCCceeEEEEcCCCceeeCHHHHHHHHhh
Q 024010 182 VLQMGGKKQFPYMVDPNTGVSMYESDNIIKYLVG 215 (274)
Q Consensus 182 ~~~inp~gkVPvLvd~n~G~~I~ES~aIi~YL~~ 215 (274)
+.+.--.+.+|.... ++.+++.-.+|.+|+++
T Consensus 18 i~~~~~~g~i~~~~~--g~~~~~~~~~l~~~~~~ 49 (49)
T TIGR01764 18 VYRLIHEGELPAYRV--GRHYRIPREDVDEYLEQ 49 (49)
T ss_pred HHHHHHcCCCCeEEe--CCeEEEeHHHHHHHHhC
Confidence 334334567888777 77889999999999863
No 257
>PLN02412 probable glutathione peroxidase
Probab=23.91 E-value=1.8e+02 Score=24.50 Aligned_cols=16 Identities=6% Similarity=0.110 Sum_probs=11.3
Q ss_pred eEEEEcCCCccHHHHH
Q 024010 141 IEIYEYESCPFCRKVR 156 (274)
Q Consensus 141 l~LY~~~~cP~CrkVr 156 (274)
+..|...+||+|++-.
T Consensus 33 lv~f~a~~C~~c~~e~ 48 (167)
T PLN02412 33 LIVNVASKCGLTDSNY 48 (167)
T ss_pred EEEEeCCCCCChHHHH
Confidence 3345569999999743
No 258
>PRK09266 hypothetical protein; Provisional
Probab=23.85 E-value=94 Score=28.17 Aligned_cols=63 Identities=11% Similarity=0.005 Sum_probs=41.4
Q ss_pred HHHHHHHHcCCCeEEEEcCCCCCCCh-hHHHhhCCCCceeEEEEcCCCceeeCHHHHHHHHhhhcC
Q 024010 154 KVREIVAVLDLDVLYYPCPRNGPNFR-PKVLQMGGKKQFPYMVDPNTGVSMYESDNIIKYLVGKYG 218 (274)
Q Consensus 154 kVr~~L~e~gI~ye~~~v~~~~~~~~-~e~~~inp~gkVPvLvd~n~G~~I~ES~aIi~YL~~~y~ 218 (274)
.+...++..|+++++..+...+-... +-|.--+-.+-+||... ++..+.....|.+.|.+.|-
T Consensus 196 ~ll~~~~~~g~~v~e~~i~~~eL~~adevfltnSl~gi~pV~~i--~~~~~~~~~~~~~~l~~~~~ 259 (266)
T PRK09266 196 LLQRGLERLGIPQRTRPVTLADLGRFAGAFACNAWRGQRAVSAI--DDVALPDSHALLELLRRAYE 259 (266)
T ss_pred HHHHHHHHcCCeeEEEECCHHHHHHhhHhhhhcCccceEEEEEE--CCEECCCCchHHHHHHHHHH
Confidence 45556778899999998843221112 23444445688999987 66666545678888887774
No 259
>cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus. They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19.
Probab=23.33 E-value=73 Score=26.60 Aligned_cols=18 Identities=22% Similarity=0.593 Sum_probs=13.5
Q ss_pred eEEEEcCCCccHHHHHHH
Q 024010 141 IEIYEYESCPFCRKVREI 158 (274)
Q Consensus 141 l~LY~~~~cP~CrkVr~~ 158 (274)
+..++..+|++|++....
T Consensus 27 mv~f~sdwC~~Ck~l~k~ 44 (130)
T cd02960 27 MVIHHLEDCPHSQALKKA 44 (130)
T ss_pred EEEEeCCcCHhHHHHHHH
Confidence 455667999999977653
No 260
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=23.22 E-value=1.4e+02 Score=21.79 Aligned_cols=33 Identities=18% Similarity=0.250 Sum_probs=27.7
Q ss_pred eEEEEcCCCccHHHHHHHHHHcCCCeEEEEcCC
Q 024010 141 IEIYEYESCPFCRKVREIVAVLDLDVLYYPCPR 173 (274)
Q Consensus 141 l~LY~~~~cP~CrkVr~~L~e~gI~ye~~~v~~ 173 (274)
--+..|.......++...|+.+|+++..++++.
T Consensus 3 ~~~i~F~st~~a~~~ek~lk~~gi~~~liP~P~ 35 (73)
T PF11823_consen 3 YYLITFPSTHDAMKAEKLLKKNGIPVRLIPTPR 35 (73)
T ss_pred eEEEEECCHHHHHHHHHHHHHCCCcEEEeCCCh
Confidence 346677778889999999999999999998754
No 261
>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold. Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti
Probab=23.18 E-value=1.6e+02 Score=23.14 Aligned_cols=20 Identities=20% Similarity=0.539 Sum_probs=13.1
Q ss_pred CeEEEEcCCCcc-HHHHHHHH
Q 024010 140 PIEIYEYESCPF-CRKVREIV 159 (274)
Q Consensus 140 ~l~LY~~~~cP~-CrkVr~~L 159 (274)
.+..|...+|++ |.+-...|
T Consensus 25 ~vl~f~~~~C~~~C~~~l~~l 45 (142)
T cd02968 25 VLVYFGYTHCPDVCPTTLANL 45 (142)
T ss_pred EEEEEEcCCCcccCHHHHHHH
Confidence 355556699998 98644444
No 262
>TIGR03759 conj_TIGR03759 integrating conjugative element protein, PFL_4693 family. Members of this protein family, such as model protein PFL_4693 from Pseudomonas fluorescens Pf-5, belong to extended genomic regions that appear to be spread by conjugative transfer. Most members have a predicted N-terminal signal sequence. The function is unknown.
Probab=22.92 E-value=2e+02 Score=25.97 Aligned_cols=36 Identities=8% Similarity=0.166 Sum_probs=29.0
Q ss_pred CCCCeEEEEcCCCccHHHHHHHHHHcCCCeEEEEcC
Q 024010 137 PEKPIEIYEYESCPFCRKVREIVAVLDLDVLYYPCP 172 (274)
Q Consensus 137 ~~~~l~LY~~~~cP~CrkVr~~L~e~gI~ye~~~v~ 172 (274)
....+.||....|+-|-..-..+...+-+++++.|.
T Consensus 108 ~~~rlalFvkd~C~~C~~~~~~l~a~~~~~Diylvg 143 (200)
T TIGR03759 108 GGGRLALFVKDDCVACDARVQRLLADNAPLDLYLVG 143 (200)
T ss_pred CCCeEEEEeCCCChHHHHHHHHHhcCCCceeEEEec
Confidence 345688999899999997777777788889988885
No 263
>cd04911 ACT_AKiii-YclM-BS_1 ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) YclM) and Clostridia species. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Bacillus subtilis YclM is reported to be a single polypeptide of 50 kD. AKIII from Bacillus subtilis strain 168 is induced by lysine and repressed by threonine and it is synergistically inhibited by lysine and threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=22.14 E-value=88 Score=23.79 Aligned_cols=23 Identities=22% Similarity=0.231 Sum_probs=20.5
Q ss_pred CccHHHHHHHHHHcCCCeEEEEc
Q 024010 149 CPFCRKVREIVAVLDLDVLYYPC 171 (274)
Q Consensus 149 cP~CrkVr~~L~e~gI~ye~~~v 171 (274)
=.||+|+-..|+..|+.||..+-
T Consensus 15 vGF~rk~L~I~E~~~is~Eh~PS 37 (76)
T cd04911 15 VGFGRKLLSILEDNGISYEHMPS 37 (76)
T ss_pred hcHHHHHHHHHHHcCCCEeeecC
Confidence 36999999999999999998764
No 264
>cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx). Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based
Probab=20.87 E-value=2.1e+02 Score=22.79 Aligned_cols=57 Identities=11% Similarity=0.071 Sum_probs=29.2
Q ss_pred CeEEEEcC--CCccHHHHHHHHHHc---CCCeEEEEcCCCCCCChhHHHhhCCCCceeEEEE
Q 024010 140 PIEIYEYE--SCPFCRKVREIVAVL---DLDVLYYPCPRNGPNFRPKVLQMGGKKQFPYMVD 196 (274)
Q Consensus 140 ~l~LY~~~--~cP~CrkVr~~L~e~---gI~ye~~~v~~~~~~~~~e~~~inp~gkVPvLvd 196 (274)
.+.|+.++ +||.|++-...|.++ --.+..+-|..+......++.+..+...+|++.|
T Consensus 28 ~vvl~f~~~~~c~~C~~e~~~l~~~~~~~~~~~vi~Is~d~~~~~~~~~~~~~~~~~~~l~D 89 (143)
T cd03014 28 VKVISVFPSIDTPVCATQTKRFNKEAAKLDNTVVLTISADLPFAQKRWCGAEGVDNVTTLSD 89 (143)
T ss_pred eEEEEEEcCCCCCcCHHHHHHHHHHHHhcCCCEEEEEECCCHHHHHHHHHhcCCCCceEeec
Confidence 45565554 489999766555321 1134444443222222244555444446787766
No 265
>TIGR02540 gpx7 putative glutathione peroxidase Gpx7. This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7.
Probab=20.22 E-value=1.8e+02 Score=23.77 Aligned_cols=18 Identities=11% Similarity=0.226 Sum_probs=12.9
Q ss_pred eEEEEcCCCccHHHHHHH
Q 024010 141 IEIYEYESCPFCRKVREI 158 (274)
Q Consensus 141 l~LY~~~~cP~CrkVr~~ 158 (274)
+..+...+||+|++-.-.
T Consensus 26 vv~~~as~C~~c~~~~~~ 43 (153)
T TIGR02540 26 LVVNVASECGFTDQNYRA 43 (153)
T ss_pred EEEEeCCCCCchhhhHHH
Confidence 455666899999875543
Done!