AmiGO: BLAST Results


BLAST match view associations BLAST with ORRM1 ORRM1 ORRM1 AT3G20930	protein from Arabidopsis thaliana	3.7e-96
BLAST match view associations BLAST with AT1G73530 AT1G73530 AT1G73530	protein from Arabidopsis thaliana	4.3e-22
BLAST match view associations BLAST with AT1G32580 AT1G32580 AT1G32580	protein from Arabidopsis thaliana	5.5e-22
BLAST match view associations BLAST with DAL1 DAL1 DAL1 differentiation and greening-like 1	protein from Arabidopsis thaliana	1.5e-21
BLAST match view associations BLAST with MORF6 MORF6 MORF6 multiple organellar RNA editing factor 6	protein from Arabidopsis thaliana	4.4e-20
BLAST match view associations BLAST with AT4G20030 AT4G20030 AT4G20030	protein from Arabidopsis thaliana	3.7e-16
BLAST match view associations BLAST with AT5G06210 AT5G06210 AT5G06210	protein from Arabidopsis thaliana	3.7e-16
BLAST match view associations BLAST with MORF9 MORF9 MORF9 multiple organellar RNA editing factor 9	protein from Arabidopsis thaliana	6.0e-16
BLAST match view associations BLAST with AT2G37510 AT2G37510 AT2G37510	protein from Arabidopsis thaliana	1.6e-15
BLAST match view associations BLAST with GR-RBP2 GR-RBP2 GR-RBP2 AT4G13850	protein from Arabidopsis thaliana	3.3e-15
BLAST match view associations BLAST with RPS19 RPS19 RPS19 AT5G47320	protein from Arabidopsis thaliana	1.1e-14
BLAST match view associations BLAST with GRP4 GRP4 GRP4 AT3G23830	protein from Arabidopsis thaliana	3.0e-14
BLAST match view associations BLAST with AT3G46020 AT3G46020 AT3G46020	protein from Arabidopsis thaliana	4.9e-14
BLAST match view associations BLAST with AT2G27330 AT2G27330 AT2G27330	protein from Arabidopsis thaliana	6.2e-14
BLAST match view associations BLAST with AT5G54580 AT5G54580 AT5G54580	protein from Arabidopsis thaliana	1.0e-13
BLAST match view associations BLAST with F6RBQ9 F6RBQ9 F6RBQ9 Uncharacterized protein	protein from Bos taurus	1.3e-13
BLAST match view associations BLAST with Rbm3 Rbm3 Rbm3 RNA binding motif protein 3	protein from Mus musculus	1.7e-13
BLAST match view associations BLAST with RBM3 RBM3 RBM3 Putative RNA-binding protein 3	protein from Homo sapiens	2.3e-13
BLAST match view associations BLAST with RBM3 RBM3 RBM3 Uncharacterized protein	protein from Sus scrofa	4.0e-13
BLAST match view associations BLAST with RBM3 RBM3 RBM3 Uncharacterized protein	protein from Canis lupus familiaris	5.3e-13
BLAST match view associations BLAST with cirbp cirbp cirbp Cold-inducible RNA-binding protein	protein from Xenopus (Silurana) tropicalis	5.3e-13
BLAST match view associations BLAST with Rbm3 Rbm3 Rbm3 RNA binding motif (RNP1, RRM) protein 3	gene from Rattus norvegicus	1.2e-12
BLAST match view associations BLAST with RBM3 RBM3 RBM3 Uncharacterized protein	protein from Canis lupus familiaris	1.6e-12
BLAST match view associations BLAST with CIRBP CIRBP CIRBP Uncharacterized protein	protein from Bos taurus	2.1e-12
BLAST match view associations BLAST with CIRBP CIRBP CIRBP Uncharacterized protein	protein from Canis lupus familiaris	2.1e-12
BLAST match view associations BLAST with CIRBP CIRBP CIRBP Uncharacterized protein	protein from Canis lupus familiaris	2.1e-12
BLAST match view associations BLAST with CIRBP CIRBP CIRBP Cold-inducible RNA-binding protein	protein from Homo sapiens	2.1e-12
BLAST match view associations BLAST with CIRBP CIRBP CIRBP Cold-inducible RNA-binding protein	protein from Homo sapiens	2.1e-12
BLAST match view associations BLAST with CIRBP CIRBP CIRBP Cold-inducible RNA-binding protein	protein from Homo sapiens	2.1e-12
BLAST match view associations BLAST with CIRBP CIRBP CIRBP Cold-inducible RNA-binding protein	protein from Homo sapiens	2.1e-12
BLAST match view associations BLAST with CIRBP CIRBP CIRBP Cold-inducible RNA-binding protein	protein from Homo sapiens	2.1e-12
BLAST match view associations BLAST with CIRBP CIRBP CIRBP Cold-inducible RNA-binding protein	protein from Homo sapiens	2.1e-12
BLAST match view associations BLAST with CIRBP CIRBP CIRBP Uncharacterized protein	protein from Sus scrofa	2.1e-12
BLAST match view associations BLAST with CIRBP CIRBP CIRBP Cold-inducible RNA-binding protein	protein from Pongo abelii	2.1e-12
BLAST match view associations BLAST with CIRBP CIRBP CIRBP Cold-inducible RNA-binding protein	protein from Cricetulus griseus	2.7e-12
BLAST match view associations BLAST with Cirbp Cirbp Cirbp cold inducible RNA binding protein	protein from Mus musculus	2.7e-12
BLAST match view associations BLAST with Cirbp Cirbp Cirbp cold inducible RNA binding protein	gene from Rattus norvegicus	2.7e-12
BLAST match view associations BLAST with cirbp cirbp cirbp Cold-inducible RNA-binding protein	protein from Rana catesbeiana	3.6e-12
BLAST match view associations BLAST with cirbp-b cirbp-b cirbp-b Cold-inducible RNA-binding protein B	protein from Xenopus laevis	8.1e-12
BLAST match view associations BLAST with CIRBP CIRBP CIRBP Uncharacterized protein	protein from Gallus gallus	1.1e-11
BLAST match view associations BLAST with CIRBP CIRBP CIRBP Uncharacterized protein	protein from Gallus gallus	1.1e-11
BLAST match view associations BLAST with CIRBP CIRBP CIRBP Uncharacterized protein	protein from Gallus gallus	1.1e-11
BLAST match view associations BLAST with I3LQ36 I3LQ36 I3LQ36 Uncharacterized protein	protein from Sus scrofa	1.1e-11
BLAST match view associations BLAST with ATRZ-1A ATRZ-1A ATRZ-1A AT3G26420	protein from Arabidopsis thaliana	1.3e-11
BLAST match view associations BLAST with cirbp-a cirbp-a cirbp-a Cold-inducible RNA-binding protein A	protein from Xenopus laevis	1.8e-11
BLAST match view associations BLAST with CCR1 CCR1 CCR1 AT4G39260	protein from Arabidopsis thaliana	3.1e-11
BLAST match view associations BLAST with RBMX RBMX RBMX Uncharacterized protein	protein from Sus scrofa	4.0e-11
BLAST match view associations BLAST with CIRBP CIRBP CIRBP Cold-inducible RNA-binding protein	protein from Homo sapiens	5.2e-11
BLAST match view associations BLAST with cirbp cirbp cirbp cold inducible RNA binding protein	gene_product from Danio rerio	5.3e-11
BLAST match view associations BLAST with AT3G08000 AT3G08000 AT3G08000	protein from Arabidopsis thaliana	6.9e-11
BLAST match view associations BLAST with RBMXL1 RBMXL1 RBMXL1 RNA binding motif protein, X-linked-like-1	protein from Homo sapiens	1.1e-10
BLAST match view associations BLAST with GR-RBP3 GR-RBP3 GR-RBP3 AT5G61030	protein from Arabidopsis thaliana	1.3e-10
BLAST match view associations BLAST with CIRBP CIRBP CIRBP Cold-inducible RNA-binding protein	protein from Homo sapiens	1.5e-10
BLAST match view associations BLAST with AT5G19030 AT5G19030 AT5G19030	protein from Arabidopsis thaliana	1.5e-10
BLAST match view associations BLAST with RBMX RBMX RBMX RNA-binding motif protein, X chromosome, N-terminally processed	protein from Homo sapiens	1.8e-10
BLAST match view associations BLAST with RBMX RBMX RBMX RNA-binding motif protein, X chromosome, N-terminally processed	protein from Homo sapiens	1.9e-10
BLAST match view associations BLAST with HNRNPA1 HNRNPA1 HNRNPA1 Heterogeneous nuclear ribonucleoprotein A1	protein from Homo sapiens	2.0e-10
BLAST match view associations BLAST with CBU_1183 CBU_1183 CBU_1183 Glycine-rich RNA-binding protein	protein from Coxiella burnetii RSA 493	2.0e-10
BLAST match view associations BLAST with CBU_1183 CBU_1183 CBU_1183 nucleic acid binding domain protein	protein from Coxiella burnetii RSA 493	2.0e-10
BLAST match view associations BLAST with AT5G59860 AT5G59860 AT5G59860	protein from Arabidopsis thaliana	2.0e-10
BLAST match view associations BLAST with RBMX RBMX RBMX Uncharacterized protein	protein from Sus scrofa	2.2e-10
BLAST match view associations BLAST with Os11g0216400 Os11g0216400 Os11g0216400 Os11g0216400 protein	protein from Oryza sativa Japonica Group	4.0e-10
BLAST match view associations BLAST with zgc:112425 zgc:112425 zgc:112425	gene_product from Danio rerio	4.3e-10
BLAST match view associations BLAST with RBMX RBMX RBMX Uncharacterized protein	protein from Sus scrofa	4.5e-10
BLAST match view associations BLAST with Rbmx Rbmx Rbmx RNA binding motif protein, X-linked	gene from Rattus norvegicus	4.5e-10
BLAST match view associations BLAST with RBMX RBMX RBMX Rbmx	protein from Bos taurus	4.5e-10
BLAST match view associations BLAST with RBMX RBMX RBMX RNA-binding motif protein, X chromosome	protein from Homo sapiens	4.5e-10
BLAST match view associations BLAST with RBMX RBMX RBMX RNA-binding motif protein, X chromosome	protein from Pan troglodytes	4.5e-10
BLAST match view associations BLAST with RBMX RBMX RBMX RNA-binding motif protein, X chromosome	protein from Macaca fascicularis	4.5e-10
BLAST match view associations BLAST with Rbmx Rbmx Rbmx RNA binding motif protein, X chromosome	protein from Mus musculus	4.5e-10
BLAST match view associations BLAST with RBMX RBMX RBMX Uncharacterized protein	protein from Canis lupus familiaris	4.5e-10
BLAST match view associations BLAST with RBMX RBMX RBMX RNA-binding motif protein, X chromosome	protein from Bos taurus	4.6e-10
BLAST match view associations BLAST with GR-RBP5 GR-RBP5 GR-RBP5 AT1G74230	protein from Arabidopsis thaliana	5.6e-10
BLAST match view associations BLAST with blt801 blt801 blt801 Glycine-rich RNA-binding protein blt801	protein from Hordeum vulgare	5.7e-10
BLAST match view associations BLAST with Rbmxl1 Rbmxl1 Rbmxl1 RNA binding motif protein, X linked-like-1	protein from Mus musculus	5.9e-10
BLAST match view associations BLAST with HNRNPA1 HNRNPA1 HNRNPA1 Heterogeneous nuclear ribonucleoprotein A1	protein from Homo sapiens	1.2e-09
BLAST match view associations BLAST with GRP7 GRP7 GRP7 AT2G21660	protein from Arabidopsis thaliana	1.2e-09
BLAST match view associations BLAST with U1-70K U1-70K U1-70K AT3G50670	protein from Arabidopsis thaliana	1.3e-09
BLAST match view associations BLAST with rbmx rbmx rbmx RNA binding motif protein, X-linked	gene_product from Danio rerio	1.3e-09
BLAST match view associations BLAST with RBMX RBMX RBMX Uncharacterized protein	protein from Gallus gallus	1.3e-09
BLAST match view associations BLAST with CIRBP CIRBP CIRBP cDNA FLJ52850, moderately similar to Cold-inducible RNA-binding protein	protein from Homo sapiens	1.6e-09
BLAST match view associations BLAST with CIRBP CIRBP CIRBP Cold-inducible RNA-binding protein	protein from Homo sapiens	1.6e-09
BLAST match view associations BLAST with LOC100514264 LOC100514264 LOC100514264 Uncharacterized protein	protein from Sus scrofa	1.6e-09
BLAST match view associations BLAST with AT2G46780 AT2G46780 AT2G46780	protein from Arabidopsis thaliana	1.7e-09
BLAST match view associations BLAST with Rbmxrtl Rbmxrtl Rbmxrtl RNA binding motif protein, X chromosome retrogene-like	gene from Rattus norvegicus	1.8e-09
BLAST match view associations BLAST with Rbmxl1 Rbmxl1 Rbmxl1 RNA binding motif protein, X-linked-like 1	gene from Rattus norvegicus	1.8e-09
BLAST match view associations BLAST with UBA1A UBA1A UBA1A AT2G22090	protein from Arabidopsis thaliana	1.8e-09
BLAST match view associations BLAST with RBMXL2 RBMXL2 RBMXL2 RNA-binding motif protein, X-linked-like-2	protein from Homo sapiens	1.8e-09
BLAST match view associations BLAST with RBM38 RBM38 RBM38 RNA-binding protein 38	protein from Homo sapiens	2.1e-09
BLAST match view associations BLAST with RBMX RBMX RBMX Uncharacterized protein	protein from Sus scrofa	2.7e-09
BLAST match view associations BLAST with RBMX RBMX RBMX RNA-binding motif protein, X chromosome, N-terminally processed	protein from Homo sapiens	3.5e-09
BLAST match view associations BLAST with CIRBP CIRBP CIRBP Cold-inducible RNA-binding protein	protein from Homo sapiens	3.5e-09
BLAST match view associations BLAST with AT4G13860 AT4G13860 AT4G13860	protein from Arabidopsis thaliana	3.5e-09
BLAST match view associations BLAST with rbm8a rbm8a rbm8a RNA binding motif protein 8A	gene_product from Danio rerio	3.5e-09
BLAST match view associations BLAST with rbmx rbmx rbmx RNA-binding motif protein, X chromosome	protein from Xenopus laevis	3.7e-09
BLAST match view associations BLAST with LOC100135403 LOC100135403 LOC100135403 LOC100135403 protein	protein from Xenopus (Silurana) tropicalis	3.8e-09
BLAST match view associations BLAST with MORF3 MORF3 MORF3 multiple organellar RNA editing factor 3	protein from Arabidopsis thaliana	4.3e-09
BLAST match view associations BLAST with RBMY1D RBMY1D RBMY1D RNA-binding motif protein, Y chromosome, family 1 member D	protein from Homo sapiens	4.4e-09
Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  024012
        (274 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2088756 - symbol:AT3G20930 species:3702 "Arabi...   956  3.7e-96   1
TAIR|locus:2206850 - symbol:AT1G73530 species:3702 "Arabi...   257  4.3e-22   1
TAIR|locus:2206639 - symbol:AT1G32580 "AT1G32580" species...   256  5.5e-22   1
TAIR|locus:2051003 - symbol:DAL1 "differentiation and gre...   252  1.5e-21   1
TAIR|locus:2063389 - symbol:MORF6 "multiple organellar RN...   238  4.4e-20   1
TAIR|locus:2119797 - symbol:AT4G20030 species:3702 "Arabi...   201  3.7e-16   1
TAIR|locus:2160752 - symbol:AT5G06210 species:3702 "Arabi...   201  3.7e-16   1
TAIR|locus:2200131 - symbol:MORF9 "multiple organellar RN...   199  6.0e-16   1
TAIR|locus:2049816 - symbol:AT2G37510 species:3702 "Arabi...   195  1.6e-15   1
TAIR|locus:2119495 - symbol:GR-RBP2 "AT4G13850" species:3...   192  3.3e-15   1
TAIR|locus:2171539 - symbol:RPS19 "ribosomal protein S19"...   187  1.1e-14   1
TAIR|locus:2076096 - symbol:GRP4 "glycine-rich RNA-bindin...   183  3.0e-14   1
TAIR|locus:2077137 - symbol:AT3G46020 species:3702 "Arabi...   181  4.9e-14   1
TAIR|locus:2039590 - symbol:AT2G27330 species:3702 "Arabi...   180  6.2e-14   1
TAIR|locus:2172144 - symbol:AT5G54580 species:3702 "Arabi...   178  1.0e-13   1
UNIPROTKB|F6RBQ9 - symbol:F6RBQ9 "Uncharacterized protein...   177  1.3e-13   1
MGI|MGI:1099460 - symbol:Rbm3 "RNA binding motif protein ...   176  1.7e-13   1
UNIPROTKB|P98179 - symbol:RBM3 "Putative RNA-binding prot...   175  2.3e-13   1
UNIPROTKB|I3L5X7 - symbol:RBM3 "Uncharacterized protein" ...   173  4.0e-13   1
UNIPROTKB|G3V6P6 - symbol:Rbm3 "Putative RNA-binding prot...   173  4.0e-13   1
UNIPROTKB|E2R771 - symbol:RBM3 "Uncharacterized protein" ...   172  5.3e-13   1
UNIPROTKB|Q28IQ9 - symbol:cirbp "Cold-inducible RNA-bindi...   172  5.3e-13   1
RGD|620145 - symbol:Rbm3 "RNA binding motif (RNP1, RRM) p...   169  1.2e-12   1
UNIPROTKB|E2R228 - symbol:E2R228 "Uncharacterized protein...   168  1.6e-12   1
UNIPROTKB|Q3SZN4 - symbol:CIRBP "Uncharacterized protein"...   167  2.1e-12   1
UNIPROTKB|E2R6G2 - symbol:CIRBP "Uncharacterized protein"...   167  2.1e-12   1
UNIPROTKB|F6XHA7 - symbol:CIRBP "Uncharacterized protein"...   167  2.1e-12   1
UNIPROTKB|K7EJV5 - symbol:CIRBP "Cold-inducible RNA-bindi...   167  2.1e-12   1
UNIPROTKB|K7EMY9 - symbol:CIRBP "Cold-inducible RNA-bindi...   167  2.1e-12   1
UNIPROTKB|K7EPM4 - symbol:CIRBP "Cold-inducible RNA-bindi...   167  2.1e-12   1
UNIPROTKB|K7EQR7 - symbol:CIRBP "Cold-inducible RNA-bindi...   167  2.1e-12   1
UNIPROTKB|K7ER40 - symbol:CIRBP "Cold-inducible RNA-bindi...   167  2.1e-12   1
UNIPROTKB|Q14011 - symbol:CIRBP "Cold-inducible RNA-bindi...   167  2.1e-12   1
UNIPROTKB|F1S6R1 - symbol:CIRBP "Uncharacterized protein"...   167  2.1e-12   1
UNIPROTKB|Q5RF83 - symbol:CIRBP "Cold-inducible RNA-bindi...   167  2.1e-12   1
UNIPROTKB|P60826 - symbol:CIRBP "Cold-inducible RNA-bindi...   166  2.7e-12   1
MGI|MGI:893588 - symbol:Cirbp "cold inducible RNA binding...   166  2.7e-12   1
RGD|620756 - symbol:Cirbp "cold inducible RNA binding pro...   166  2.7e-12   1
UNIPROTKB|Q9PTX2 - symbol:cirbp "Cold-inducible RNA-bindi...   165  3.6e-12   1
UNIPROTKB|Q9DED4 - symbol:cirbp-b "Cold-inducible RNA-bin...   162  8.1e-12   1
UNIPROTKB|H9KZV5 - symbol:CIRBP "Uncharacterized protein"...   161  1.1e-11   1
UNIPROTKB|H9L0U4 - symbol:CIRBP "Uncharacterized protein"...   161  1.1e-11   1
UNIPROTKB|H9L3B3 - symbol:CIRBP "Uncharacterized protein"...   161  1.1e-11   1
UNIPROTKB|I3LQ36 - symbol:I3LQ36 "Uncharacterized protein...   161  1.1e-11   1
TAIR|locus:2079276 - symbol:ATRZ-1A species:3702 "Arabido...   170  1.3e-11   1
UNIPROTKB|O93235 - symbol:cirbp-a "Cold-inducible RNA-bin...   159  1.8e-11   1
TAIR|locus:2136298 - symbol:CCR1 "cold, circadian rhythm,...   157  3.1e-11   1
UNIPROTKB|K7GNR2 - symbol:RBMX "Uncharacterized protein" ...   156  4.0e-11   1
UNIPROTKB|K7ENX8 - symbol:CIRBP "Cold-inducible RNA-bindi...   155  5.2e-11   1
ZFIN|ZDB-GENE-030131-5841 - symbol:cirbp "cold inducible ...   161  5.3e-11   1
TAIR|locus:2077427 - symbol:AT3G08000 species:3702 "Arabi...   154  6.9e-11   1
UNIPROTKB|Q96E39 - symbol:RBMXL1 "RNA binding motif prote...   171  1.1e-10   1
ASPGD|ASPL0000040642 - symbol:AN2989 species:162425 "Emer...   152  1.2e-10   1
TAIR|locus:2159401 - symbol:GR-RBP3 "glycine-rich RNA-bin...   168  1.3e-10   1
UNIPROTKB|D6W5Y5 - symbol:CIRBP "Cold-inducible RNA-bindi...   167  1.5e-10   1
TAIR|locus:2179624 - symbol:AT5G19030 species:3702 "Arabi...   151  1.5e-10   1
UNIPROTKB|H0Y6E7 - symbol:RBMX "RNA-binding motif protein...   166  1.8e-10   1
UNIPROTKB|H3BT71 - symbol:RBMX "RNA-binding motif protein...   166  1.9e-10   1
UNIPROTKB|J3KQA8 - symbol:HNRNPA1 "Heterogeneous nuclear ...   150  2.0e-10   1
UNIPROTKB|Q83CD7 - symbol:CBU_1183 "Glycine-rich RNA-bind...   150  2.0e-10   1
TIGR_CMR|CBU_1183 - symbol:CBU_1183 "nucleic acid binding...   150  2.0e-10   1
TAIR|locus:2168133 - symbol:AT5G59860 species:3702 "Arabi...   150  2.0e-10   1
UNIPROTKB|K7GRX3 - symbol:RBMX "Uncharacterized protein" ...   166  2.2e-10   1
UNIPROTKB|Q2R8U1 - symbol:Os11g0216400 "Os11g0216400 prot...   166  4.0e-10   1
ZFIN|ZDB-GENE-050417-329 - symbol:zgc:112425 "zgc:112425"...   147  4.3e-10   1
UNIPROTKB|F1RQ90 - symbol:RBMX "Uncharacterized protein" ...   166  4.5e-10   1
RGD|1565256 - symbol:Rbmx "RNA binding motif protein, X-l...   166  4.5e-10   1
UNIPROTKB|D3JUI8 - symbol:RBMX "RNA-binding motif protein...   166  4.5e-10   1
UNIPROTKB|P38159 - symbol:RBMX "RNA-binding motif protein...   166  4.5e-10   1
UNIPROTKB|A5A6M3 - symbol:RBMX "RNA-binding motif protein...   166  4.5e-10   1
UNIPROTKB|Q4R7F0 - symbol:RBMX "RNA-binding motif protein...   166  4.5e-10   1
MGI|MGI:1343044 - symbol:Rbmx "RNA binding motif protein,...   166  4.5e-10   1
UNIPROTKB|E2R068 - symbol:RBMX "Uncharacterized protein" ...   166  4.5e-10   1
UNIPROTKB|Q29RT0 - symbol:RBMX "RNA-binding motif protein...   166  4.6e-10   1
TAIR|locus:2019622 - symbol:GR-RBP5 "AT1G74230" species:3...   162  5.6e-10   1
UNIPROTKB|Q43472 - symbol:blt801 "Glycine-rich RNA-bindin...   146  5.7e-10   1
MGI|MGI:1343045 - symbol:Rbmxl1 "RNA binding motif protei...   165  5.9e-10   1
UNIPROTKB|F8W646 - symbol:HNRNPA1 "Heterogeneous nuclear ...   143  1.2e-09   1
TAIR|locus:2049359 - symbol:GRP7 "AT2G21660" species:3702...   143  1.2e-09   1
TAIR|locus:2101714 - symbol:U1-70K "AT3G50670" species:37...   163  1.3e-09   1
ZFIN|ZDB-GENE-030131-579 - symbol:rbmx "RNA binding motif...   162  1.3e-09   1
UNIPROTKB|F1NZD3 - symbol:RBMX "Uncharacterized protein" ...   162  1.3e-09   1
UNIPROTKB|B4E2X2 - symbol:CIRBP "Cold-inducible RNA-bindi...   157  1.6e-09   1
UNIPROTKB|K7ELT6 - symbol:CIRBP "Cold-inducible RNA-bindi...   142  1.6e-09   1
UNIPROTKB|I3LH22 - symbol:LOC100514264 "Uncharacterized p...   142  1.6e-09   1
TAIR|locus:2044370 - symbol:AT2G46780 species:3702 "Arabi...   160  1.7e-09   1
RGD|1306751 - symbol:Rbmxrtl "RNA binding motif protein, ...   161  1.8e-09   1
RGD|1585845 - symbol:Rbmxl1 "RNA binding motif protein, X...   161  1.8e-09   1
TAIR|locus:2055956 - symbol:UBA1A species:3702 "Arabidops...   160  1.8e-09   1
UNIPROTKB|O75526 - symbol:RBMXL2 "RNA-binding motif prote...   161  1.8e-09   1
UNIPROTKB|F6VZ39 - symbol:RBM38 "RNA-binding protein 38" ...   141  2.1e-09   1
UNIPROTKB|K7GMF5 - symbol:RBMX "Uncharacterized protein" ...   140  2.7e-09   1
UNIPROTKB|H3BR27 - symbol:RBMX "RNA-binding motif protein...   139  3.5e-09   1
UNIPROTKB|K7ELV6 - symbol:CIRBP "Cold-inducible RNA-bindi...   139  3.5e-09   1
TAIR|locus:2119505 - symbol:AT4G13860 species:3702 "Arabi...   139  3.5e-09   1
ZFIN|ZDB-GENE-050306-51 - symbol:rbm8a "RNA binding motif...   139  3.5e-09   1
UNIPROTKB|Q6IRQ4 - symbol:rbmx "RNA-binding motif protein...   158  3.7e-09   1
UNIPROTKB|A9UMT9 - symbol:LOC100135403 "LOC100135403 prot...   158  3.8e-09   1
TAIR|locus:2083348 - symbol:MORF3 "multiple organellar RN...   152  4.3e-09   1
UNIPROTKB|B7ZMD9 - symbol:RBMY1D "RNA-binding motif prote...   159  4.4e-09   1

WARNING:  Descriptions of 920 database sequences were not reported due to the
          limiting value of parameter V = 100.


>TAIR|locus:2088756 [details] [associations]
            symbol:AT3G20930 species:3702 "Arabidopsis thaliana"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
            acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
            [GO:0008150 "biological_process" evidence=ND] [GO:0000023 "maltose
            metabolic process" evidence=RCA] [GO:0010027 "thylakoid membrane
            organization" evidence=RCA] [GO:0019252 "starch biosynthetic
            process" evidence=RCA] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:CP002686
            GenomeReviews:BA000014_GR GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003676 HSSP:Q9V535 eggNOG:COG0724 EMBL:AY099828
            EMBL:AY084565 EMBL:BT002195 IPI:IPI00537313 RefSeq:NP_566672.1
            UniGene:At.43817 ProteinModelPortal:Q8L440 SMR:Q8L440 PRIDE:Q8L440
            EnsemblPlants:AT3G20930.1 GeneID:821642 KEGG:ath:AT3G20930
            TAIR:At3g20930 InParanoid:Q8L440 OMA:KAQMVDH PhylomeDB:Q8L440
            ProtClustDB:CLSN2688611 ArrayExpress:Q8L440 Genevestigator:Q8L440
            Uniprot:Q8L440
        Length = 374

 Score = 956 (341.6 bits), Expect = 3.7e-96, P = 3.7e-96
 Identities = 188/272 (69%), Positives = 220/272 (80%)

Query:     3 IYDASCDTHFGFCCNVDEETSRELARLPGVLTVRPDPDYNSVKKDYSCLDIQMSNPWNSQ 62
             IYDAS DTHFGFCC++DE+ SR+LA LPGV+++RP+ DY+S KK+Y            S 
Sbjct:   112 IYDASFDTHFGFCCHIDEDASRQLASLPGVVSIRPEQDYSSEKKNYGI---------GSH 162

Query:    63 IGTTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIYHVSWQ 122
              G +L F  GT KHW+VR+DKPGVG+VTKAQMVD   Q+L+KVL NEKDAQMC+YHVSWQ
Sbjct:   163 KGVSL-FDHGTVKHWMVRIDKPGVGIVTKAQMVDHCVQLLSKVLWNEKDAQMCLYHVSWQ 221

Query:   123 SNFGFCCELDDECAQELTGVPGVLSVQPDENFGSENKDYGGNNLQNSMVPSDSSEASPTQ 182
             S+FGFCC+LD+  A EL GVPGVL+V PD +F S NKDY G++ Q+S    D SE+ P  
Sbjct:   222 SDFGFCCDLDERSAVELAGVPGVLAVVPDNSFESLNKDYEGDSTQDSR-DQDDSESPP-- 278

Query:   183 IKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASA 242
             +KTKKLF+TGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAF+EYTTEEAA  
Sbjct:   279 VKTKKLFITGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFLEYTTEEAAGT 338

Query:   243 ALKEMNGKIINGWMIVVDVAKTTP-KYSRGRP 273
             ALKEMNGKIINGWMIVVDVAKT P + +R +P
Sbjct:   339 ALKEMNGKIINGWMIVVDVAKTKPFRQNRSQP 370

 Score = 262 (97.3 bits), Expect = 1.3e-22, P = 1.3e-22
 Identities = 44/92 (47%), Positives = 69/92 (75%)

Query:    71 LGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIYHVSWQSNFGFCCE 130
             L    +W+V +DKP   V +K+ MVD Y +IL KVLGNEKDAQ+ IY  S+ ++FGFCC 
Sbjct:    67 LTRNSYWMVLLDKPPHWVSSKSAMVDYYVEILAKVLGNEKDAQVSIYDASFDTHFGFCCH 126

Query:   131 LDDECAQELTGVPGVLSVQPDENFGSENKDYG 162
             +D++ +++L  +PGV+S++P++++ SE K+YG
Sbjct:   127 IDEDASRQLASLPGVVSIRPEQDYSSEKKNYG 158

 Score = 143 (55.4 bits), Expect = 2.2e-07, P = 2.2e-07
 Identities = 25/48 (52%), Positives = 34/48 (70%)

Query:     1 MCIYDASCDTHFGFCCNVDEETSRELARLPGVLTVRPDPDYNSVKKDY 48
             MC+Y  S  + FGFCC++DE ++ ELA +PGVL V PD  + S+ KDY
Sbjct:   213 MCLYHVSWQSDFGFCCDLDERSAVELAGVPGVLAVVPDNSFESLNKDY 260


>TAIR|locus:2206850 [details] [associations]
            symbol:AT1G73530 species:3702 "Arabidopsis thaliana"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
            acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
            [GO:0008150 "biological_process" evidence=ND] [GO:0009507
            "chloroplast" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:CP002684
            GenomeReviews:CT485782_GR GO:GO:0009507 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 HSSP:P09651 EMBL:AC012396
            EMBL:BT021981 EMBL:BT028910 IPI:IPI00543837 PIR:A96762
            RefSeq:NP_177494.1 UniGene:At.34984 ProteinModelPortal:Q9FX45
            SMR:Q9FX45 STRING:Q9FX45 PRIDE:Q9FX45 EnsemblPlants:AT1G73530.1
            GeneID:843687 KEGG:ath:AT1G73530 TAIR:At1g73530 eggNOG:NOG302687
            HOGENOM:HOG000152583 InParanoid:Q9FX45 OMA:FRTTEDT PhylomeDB:Q9FX45
            ProtClustDB:CLSN2914346 Genevestigator:Q9FX45 Uniprot:Q9FX45
        Length = 181

 Score = 257 (95.5 bits), Expect = 4.3e-22, P = 4.3e-22
 Identities = 63/154 (40%), Positives = 92/154 (59%)

Query:   124 NFGFCCELDDECAQELTGVPGVLSVQPDENFGSENKDYGGNNLQNSMVPSDSSEASPTQI 183
             NF   C +   C +   G  GV+S +         +D GG  L +S + +DSS + P+  
Sbjct:    24 NFSAICSVS--CGRINVGT-GVISAR-------RRRDIGGV-LISSCLSTDSSSSPPSSS 72

Query:   184 ---KTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAA 240
                KTK L+V+GLSF T+E TLR  FE FG L+ + ++MDK++ R KG+AF+ Y TEE A
Sbjct:    73 SGPKTK-LYVSGLSFRTTEDTLRDTFEQFGNLIHMNMVMDKVANRPKGFAFLRYETEEEA 131

Query:   241 SAALKEMNGKIINGWMIVVDVAKTTPKYSRGRPR 274
               A++ M+GK ++G +I V+ AKT    SR +PR
Sbjct:   132 MKAIQGMHGKFLDGRVIFVEEAKTRSDMSRAKPR 165


>TAIR|locus:2206639 [details] [associations]
            symbol:AT1G32580 "AT1G32580" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0008150
            "biological_process" evidence=ND] [GO:0009507 "chloroplast"
            evidence=ISM] [GO:0005739 "mitochondrion" evidence=IDA]
            EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005739 EMBL:AC055769
            HOGENOM:HOG000272676 ProtClustDB:CLSN2682809 EMBL:AY063995
            EMBL:AY096695 IPI:IPI00520554 PIR:D86451 RefSeq:NP_174536.1
            UniGene:At.27111 IntAct:Q9C7Y2 STRING:Q9C7Y2 PaxDb:Q9C7Y2
            PRIDE:Q9C7Y2 EnsemblPlants:AT1G32580.1 GeneID:840152
            KEGG:ath:AT1G32580 TAIR:At1g32580 eggNOG:NOG251524 OMA:GENATKQ
            PhylomeDB:Q9C7Y2 ArrayExpress:Q9C7Y2 Genevestigator:Q9C7Y2
            Uniprot:Q9C7Y2
        Length = 229

 Score = 256 (95.2 bits), Expect = 5.5e-22, P = 5.5e-22
 Identities = 49/104 (47%), Positives = 67/104 (64%)

Query:    68 LFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIYHVSWQSNFGF 127
             LFP    +HWL+ MDKPG    TK QM+D Y Q L K++G+E++A+  IY+VS +  FGF
Sbjct:    87 LFPGCDYEHWLIVMDKPGGENATKQQMIDCYVQTLAKIIGSEEEAKKKIYNVSCERYFGF 146

Query:   128 CCELDDECAQELTGVPGVLSVQPDENFGSENKDYGGNNLQNSMV 171
              CE+D+E + +L G+PGVL + PD     ENKDYG     N  +
Sbjct:   147 GCEIDEETSNKLEGLPGVLFILPDSYVDQENKDYGAELFVNGEI 190

 Score = 131 (51.2 bits), Expect = 1.4e-06, P = 1.4e-06
 Identities = 24/46 (52%), Positives = 31/46 (67%)

Query:     3 IYDASCDTHFGFCCNVDEETSRELARLPGVLTVRPDPDYNSVKKDY 48
             IY+ SC+ +FGF C +DEETS +L  LPGVL + PD   +   KDY
Sbjct:   135 IYNVSCERYFGFGCEIDEETSNKLEGLPGVLFILPDSYVDQENKDY 180


>TAIR|locus:2051003 [details] [associations]
            symbol:DAL1 "differentiation and greening-like 1"
            species:3702 "Arabidopsis thaliana" [GO:0003674
            "molecular_function" evidence=ND] [GO:0002103 "endonucleolytic
            cleavage of tetracistronic rRNA transcript (SSU-rRNA, LSU-rRNA,
            4.5S-rRNA, 5S-rRNA)" evidence=IMP] [GO:0009507 "chloroplast"
            evidence=IDA] [GO:0009657 "plastid organization" evidence=IMP]
            [GO:0000478 "endonucleolytic cleavage involved in rRNA processing"
            evidence=RCA] [GO:0006364 "rRNA processing" evidence=RCA]
            [GO:0006399 "tRNA metabolic process" evidence=RCA] [GO:0009658
            "chloroplast organization" evidence=RCA] [GO:0009902 "chloroplast
            relocation" evidence=RCA] [GO:0009965 "leaf morphogenesis"
            evidence=RCA] [GO:0010027 "thylakoid membrane organization"
            evidence=RCA] [GO:0010207 "photosystem II assembly" evidence=RCA]
            [GO:0030154 "cell differentiation" evidence=RCA] [GO:0034660 "ncRNA
            metabolic process" evidence=RCA] [GO:0035304 "regulation of protein
            dephosphorylation" evidence=RCA] [GO:0042793 "transcription from
            plastid promoter" evidence=RCA] [GO:0045893 "positive regulation of
            transcription, DNA-dependent" evidence=RCA] GO:GO:0009507
            EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0009657 EMBL:AC002332
            EMBL:AF446351 EMBL:AY097425 EMBL:AK228465 IPI:IPI00521047
            PIR:D84745 PIR:T52623 RefSeq:NP_180901.1 UniGene:At.111
            IntAct:O22793 STRING:O22793 PaxDb:O22793 PRIDE:O22793
            EnsemblPlants:AT2G33430.1 GeneID:817907 KEGG:ath:AT2G33430
            TAIR:At2g33430 eggNOG:NOG268944 HOGENOM:HOG000272676
            InParanoid:O22793 OMA:YSRRREN PhylomeDB:O22793
            ProtClustDB:CLSN2682809 ArrayExpress:O22793 Genevestigator:O22793
            GO:GO:0002103 Uniprot:O22793
        Length = 219

 Score = 252 (93.8 bits), Expect = 1.5e-21, P = 1.5e-21
 Identities = 52/110 (47%), Positives = 68/110 (61%)

Query:    68 LFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIYHVSWQSNFGF 127
             LFP    +HWL+ MDKPG    TK QM+D Y Q L KV+G+E++A+  IY+VS +   GF
Sbjct:    78 LFPGCDYEHWLIVMDKPGGEGATKQQMIDCYIQTLAKVVGSEEEAKKRIYNVSCERYLGF 137

Query:   128 CCELDDECAQELTGVPGVLSVQPDENFGSENKDYGGNNLQNSMVPSDSSE 177
              CE+D+E + +L G+PGVL V PD     ENKDYG     N  +   S E
Sbjct:   138 GCEIDEETSTKLEGLPGVLFVLPDSYVDPENKDYGAELFVNGEIVQRSPE 187

 Score = 124 (48.7 bits), Expect = 8.4e-06, P = 8.4e-06
 Identities = 24/46 (52%), Positives = 30/46 (65%)

Query:     3 IYDASCDTHFGFCCNVDEETSRELARLPGVLTVRPDPDYNSVKKDY 48
             IY+ SC+ + GF C +DEETS +L  LPGVL V PD   +   KDY
Sbjct:   126 IYNVSCERYLGFGCEIDEETSTKLEGLPGVLFVLPDSYVDPENKDY 171


>TAIR|locus:2063389 [details] [associations]
            symbol:MORF6 "multiple organellar RNA editing factor 6"
            species:3702 "Arabidopsis thaliana" [GO:0009507 "chloroplast"
            evidence=ISM] [GO:0005739 "mitochondrion" evidence=IDA]
            GO:GO:0005739 EMBL:CP002685 GenomeReviews:CT485783_GR EMBL:AC004667
            HOGENOM:HOG000272676 ProtClustDB:CLSN2682809 EMBL:AY072439
            EMBL:BT003414 IPI:IPI00523082 PIR:B84766 RefSeq:NP_181067.1
            UniGene:At.37691 IntAct:O82169 PaxDb:O82169 PRIDE:O82169
            EnsemblPlants:AT2G35240.1 GeneID:818091 KEGG:ath:AT2G35240
            TAIR:At2g35240 eggNOG:NOG317940 OMA:SPTIFHA PhylomeDB:O82169
            ArrayExpress:O82169 Genevestigator:O82169 Uniprot:O82169
        Length = 232

 Score = 238 (88.8 bits), Expect = 4.4e-20, P = 4.4e-20
 Identities = 49/106 (46%), Positives = 67/106 (63%)

Query:    68 LFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIYHVSWQSNFGF 127
             LFP    +HWL+ M+KPG     K QM+D Y Q L K++G+E++A+  IY+VS +  FGF
Sbjct:    90 LFPGCDYEHWLIVMEKPGGENAQKQQMIDCYVQTLAKIVGSEEEARKKIYNVSCERYFGF 149

Query:   128 CCELDDECAQELTGVPGVLSVQPDENFGSENKDYGGNNLQNS-MVP 172
              CE+D+E + +L G+PGVL V PD     E KDYG     N  +VP
Sbjct:   150 GCEIDEETSNKLEGLPGVLFVLPDSYVDPEFKDYGAELFVNGEVVP 195

 Score = 128 (50.1 bits), Expect = 3.5e-06, P = 3.5e-06
 Identities = 25/46 (54%), Positives = 31/46 (67%)

Query:     3 IYDASCDTHFGFCCNVDEETSRELARLPGVLTVRPDPDYNSVKKDY 48
             IY+ SC+ +FGF C +DEETS +L  LPGVL V PD   +   KDY
Sbjct:   138 IYNVSCERYFGFGCEIDEETSNKLEGLPGVLFVLPDSYVDPEFKDY 183


>TAIR|locus:2119797 [details] [associations]
            symbol:AT4G20030 species:3702 "Arabidopsis thaliana"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
            acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
            [GO:0008150 "biological_process" evidence=ND] [GO:0009507
            "chloroplast" evidence=ISM] [GO:0005634 "nucleus" evidence=IDA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0005634 EMBL:CP002687 GenomeReviews:CT486007_GR
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:BT025729
            EMBL:AK176834 IPI:IPI00538556 RefSeq:NP_567594.1 UniGene:At.26265
            UniGene:At.71246 ProteinModelPortal:Q67XI5 SMR:Q67XI5 STRING:Q67XI5
            EnsemblPlants:AT4G20030.1 GeneID:827748 KEGG:ath:AT4G20030
            TAIR:At4g20030 HOGENOM:HOG000005780 InParanoid:Q67XI5 OMA:DEVADCW
            PhylomeDB:Q67XI5 ProtClustDB:CLSN2689522 Genevestigator:Q67XI5
            Uniprot:Q67XI5
        Length = 152

 Score = 201 (75.8 bits), Expect = 3.7e-16, P = 3.7e-16
 Identities = 40/88 (45%), Positives = 59/88 (67%)

Query:   187 KLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKE 246
             K+ V  L F TSE  L+  F  FGE+ EVK+I D+  KRSKGYAFI++T+++ A  A++ 
Sbjct:    41 KIMVRNLPFSTSEDFLKREFSAFGEIAEVKLIKDEAMKRSKGYAFIQFTSQDDAFLAIET 100

Query:   247 MNGKIINGWMIVVDVAKTTPKYSRGRPR 274
             M+ ++ NG MI +D+AK   +  +G PR
Sbjct:   101 MDRRMYNGRMIYIDIAKPGKRDFQGLPR 128


>TAIR|locus:2160752 [details] [associations]
            symbol:AT5G06210 species:3702 "Arabidopsis thaliana"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
            acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
            [GO:0008150 "biological_process" evidence=ND] [GO:0009507
            "chloroplast" evidence=ISM] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:CP002688
            GenomeReviews:BA000015_GR GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003676 eggNOG:COG0724 EMBL:AP002544 HOGENOM:HOG000276232
            HSSP:Q61474 EMBL:AY062714 EMBL:AY093349 EMBL:AY087577
            IPI:IPI00530408 RefSeq:NP_196239.1 UniGene:At.27256
            ProteinModelPortal:Q9FFZ6 SMR:Q9FFZ6 STRING:Q9FFZ6 PaxDb:Q9FFZ6
            PRIDE:Q9FFZ6 EnsemblPlants:AT5G06210.1 GeneID:830508
            KEGG:ath:AT5G06210 TAIR:At5g06210 InParanoid:Q9FFZ6 OMA:SDRSKGF
            PhylomeDB:Q9FFZ6 ProtClustDB:CLSN2686837 ArrayExpress:Q9FFZ6
            Genevestigator:Q9FFZ6 Uniprot:Q9FFZ6
        Length = 146

 Score = 201 (75.8 bits), Expect = 3.7e-16, P = 3.7e-16
 Identities = 46/112 (41%), Positives = 69/112 (61%)

Query:   162 GGNNLQNSMVPSDSSEASPTQIK--TKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIM 219
             GG +L++  + + S+    TQ +    KLF+ GLSF T+E+ L  AF   G++VE +I+M
Sbjct:     8 GGRHLKSVCLINSSASCFFTQRRGVASKLFIGGLSFCTTEQGLSEAFSKCGQVVEAQIVM 67

Query:   220 DKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVDVAKTTPKYSRG 271
             D++S RSKG+ F+ + + + A  AL E NG+ +NG  I VD AK   K S G
Sbjct:    68 DRVSDRSKGFGFVTFASADEAQKALMEFNGQQLNGRTIFVDYAKA--KQSLG 117


>TAIR|locus:2200131 [details] [associations]
            symbol:MORF9 "multiple organellar RNA editing factor 9"
            species:3702 "Arabidopsis thaliana" [GO:0009507 "chloroplast"
            evidence=ISM;IDA] [GO:0009941 "chloroplast envelope" evidence=IDA]
            [GO:0009570 "chloroplast stroma" evidence=IDA] [GO:1900865
            "chloroplast RNA modification" evidence=IMP] [GO:0006364 "rRNA
            processing" evidence=RCA] [GO:0006399 "tRNA metabolic process"
            evidence=RCA] [GO:0009073 "aromatic amino acid family biosynthetic
            process" evidence=RCA] [GO:0009658 "chloroplast organization"
            evidence=RCA] [GO:0009793 "embryo development ending in seed
            dormancy" evidence=RCA] [GO:0010027 "thylakoid membrane
            organization" evidence=RCA] [GO:0016226 "iron-sulfur cluster
            assembly" evidence=RCA] [GO:0045036 "protein targeting to
            chloroplast" evidence=RCA] [GO:0045893 "positive regulation of
            transcription, DNA-dependent" evidence=RCA] EMBL:CP002684
            GO:GO:0009570 GO:GO:0009941 EMBL:AC011661 GO:GO:1900865
            EMBL:BT005071 EMBL:AK117508 IPI:IPI00532519 RefSeq:NP_172610.1
            UniGene:At.42133 IntAct:Q9LPZ1 STRING:Q9LPZ1 PRIDE:Q9LPZ1
            ProMEX:Q9LPZ1 EnsemblPlants:AT1G11430.1 GeneID:837685
            KEGG:ath:AT1G11430 TAIR:At1g11430 InParanoid:Q9LPZ1 OMA:NEQRETI
            PhylomeDB:Q9LPZ1 ProtClustDB:CLSN2681966 ArrayExpress:Q9LPZ1
            Genevestigator:Q9LPZ1 Uniprot:Q9LPZ1
        Length = 232

 Score = 199 (75.1 bits), Expect = 6.0e-16, P = 6.0e-16
 Identities = 50/146 (34%), Positives = 75/146 (51%)

Query:    43 SVKKDYSCLDIQMSNPWNSQIGTTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQIL 102
             +V  DYS    + SN  N Q   T++ P     HWL+ M+ P     ++ QM+D Y   L
Sbjct:    61 TVDSDYSS---KRSNS-NEQ-RETIMLPGCDYNHWLIVMEFPKDPAPSRDQMIDTYLNTL 115

Query:   103 TKVLGNEKDAQMCIYHVSWQSNFGFCCELDDECAQELTGVPGVLSVQPDENFGSENKDYG 162
               VLG+ ++A+  +Y  S  +  GF C +D+E +++  G+PGVL V PD     +NKDYG
Sbjct:   116 ATVLGSMEEAKKNMYAFSTTTYTGFQCTIDEETSEKFKGLPGVLWVLPDSYIDVKNKDYG 175

Query:   163 GNNLQNS-MVPSDSSEASPTQIKTKK 187
             G+   N  ++P       P Q    K
Sbjct:   176 GDKYINGEIIPCTYPTYQPKQRNNTK 201


>TAIR|locus:2049816 [details] [associations]
            symbol:AT2G37510 species:3702 "Arabidopsis thaliana"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
            acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
            [GO:0008150 "biological_process" evidence=ND] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0000166
            Gene3D:3.30.70.330 EMBL:AC005896 GO:GO:0003676 HOGENOM:HOG000276232
            HSSP:P11940 EMBL:AY084740 EMBL:BT028941 IPI:IPI00545899 PIR:F84793
            RefSeq:NP_181287.1 UniGene:At.37414 ProteinModelPortal:Q8S8L4
            SMR:Q8S8L4 PRIDE:Q8S8L4 EnsemblPlants:AT2G37510.1 GeneID:818327
            KEGG:ath:AT2G37510 TAIR:At2g37510 eggNOG:NOG305672
            InParanoid:Q8S8L4 OMA:NKTIGWC PhylomeDB:Q8S8L4
            ProtClustDB:CLSN2683075 ArrayExpress:Q8S8L4 Genevestigator:Q8S8L4
            Uniprot:Q8S8L4
        Length = 142

 Score = 195 (73.7 bits), Expect = 1.6e-15, P = 1.6e-15
 Identities = 47/112 (41%), Positives = 69/112 (61%)

Query:   162 GGNNLQNSMVPSDSSEASPTQIKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDK 221
             G ++L +S  PS       T + + +LFV+GLS  T+ + L+ AF  FG+LV+ ++I D+
Sbjct:    13 GSSSLLSS--PSLCVRRCST-LTSPRLFVSGLSRLTTNEKLQDAFASFGQLVDARVITDR 69

Query:   222 ISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVDVAKTTPKYSRGRP 273
              S RSKG+ F+ Y T E A  A  EMN K ++GW+I VD A+  P+  R RP
Sbjct:    70 DSGRSKGFGFVTYATIEDAEKAKAEMNAKFLDGWVIFVDPAR--PREPR-RP 118


>TAIR|locus:2119495 [details] [associations]
            symbol:GR-RBP2 "AT4G13850" species:3702 "Arabidopsis
            thaliana" [GO:0003723 "RNA binding" evidence=ISS;IDA] [GO:0005739
            "mitochondrion" evidence=ISM;IDA] [GO:0009409 "response to cold"
            evidence=IGI;IEP;IMP] [GO:0003690 "double-stranded DNA binding"
            evidence=IDA] [GO:0003697 "single-stranded DNA binding"
            evidence=IDA] [GO:0009414 "response to water deprivation"
            evidence=IEP] [GO:0005524 "ATP binding" evidence=IDA] [GO:0001072
            "RNA binding transcription antitermination factor activity"
            evidence=IDA] [GO:0006970 "response to osmotic stress"
            evidence=IMP] [GO:0009631 "cold acclimation" evidence=IMP]
            [GO:0009651 "response to salt stress" evidence=IMP] [GO:0009845
            "seed germination" evidence=IMP] [GO:0031564 "transcription
            antitermination" evidence=IDA] [GO:0005507 "copper ion binding"
            evidence=IDA] [GO:0005794 "Golgi apparatus" evidence=RCA]
            [GO:0006364 "rRNA processing" evidence=RCA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0005739 GO:GO:0005524 EMBL:CP002687 GenomeReviews:CT486007_GR
            GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0005507 GO:GO:0003723
            GO:GO:0006970 GO:GO:0009845 GO:GO:0003690 GO:GO:0003697
            eggNOG:COG0724 EMBL:AL035528 EMBL:AL161537 HOGENOM:HOG000276232
            EMBL:AJ002892 EMBL:AY072361 EMBL:BT002197 EMBL:AY085621 EMBL:X69377
            EMBL:Z18189 IPI:IPI00527583 PIR:S31443 PIR:T05254
            RefSeq:NP_193121.1 UniGene:At.15585 UniGene:At.2
            ProteinModelPortal:Q9SVM8 SMR:Q9SVM8 IntAct:Q9SVM8 STRING:Q9SVM8
            PaxDb:Q9SVM8 PRIDE:Q9SVM8 ProMEX:Q9SVM8 EnsemblPlants:AT4G13850.1
            GeneID:827019 KEGG:ath:AT4G13850 GeneFarm:3949 TAIR:At4g13850
            InParanoid:Q9SVM8 OMA:ISEMDGK PhylomeDB:Q9SVM8 ProtClustDB:PLN03134
            Genevestigator:Q9SVM8 Uniprot:Q9SVM8
        Length = 158

 Score = 192 (72.6 bits), Expect = 3.3e-15, P = 3.3e-15
 Identities = 43/107 (40%), Positives = 66/107 (61%)

Query:   164 NNLQNSMVPSDSSEASPTQIKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKIS 223
             N   N  VP  S   S  ++ + KLF+ GLS+ T + +LR AF  FG++V+ K+I+D+ +
Sbjct:    14 NISSNGNVPVTSMLGS-LRLMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRET 72

Query:   224 KRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVDVAKTTPKYSR 270
              RS+G+ F+ +  E AA+AA+ EM+GK +NG  I V+ A   P   R
Sbjct:    73 GRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPANDRPSAPR 119


>TAIR|locus:2171539 [details] [associations]
            symbol:RPS19 "ribosomal protein S19" species:3702
            "Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0003735 "structural
            constituent of ribosome" evidence=IEA] [GO:0005739 "mitochondrion"
            evidence=ISM] [GO:0005840 "ribosome" evidence=IEA] [GO:0006412
            "translation" evidence=IEA;NAS] [GO:0015935 "small ribosomal
            subunit" evidence=IEA] [GO:0006354 "DNA-dependent transcription,
            elongation" evidence=RCA] [GO:0005763 "mitochondrial small
            ribosomal subunit" evidence=IDA] InterPro:IPR000504
            InterPro:IPR002222 InterPro:IPR005732 InterPro:IPR012677
            InterPro:IPR020934 InterPro:IPR023575 Pfam:PF00076 Pfam:PF00203
            PRINTS:PR00975 PROSITE:PS00323 PROSITE:PS50102 SMART:SM00360
            EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0000166 GO:GO:0006412
            Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0003735 eggNOG:COG0724
            GO:GO:0005763 EMBL:AB018117 Gene3D:3.30.860.10 HAMAP:MF_00531
            SUPFAM:SSF54570 TIGRFAMs:TIGR01050 KO:K02965 EMBL:X78035
            EMBL:X77989 EMBL:AY045963 EMBL:AY091354 EMBL:Z18203 IPI:IPI00544075
            PIR:S71114 RefSeq:NP_568681.1 UniGene:At.5396
            ProteinModelPortal:P39697 SMR:P39697 STRING:P39697 PaxDb:P39697
            PRIDE:P39697 EnsemblPlants:AT5G47320.1 GeneID:834779
            KEGG:ath:AT5G47320 GeneFarm:3993 TAIR:At5g47320 InParanoid:P39697
            PhylomeDB:P39697 Genevestigator:P39697 GermOnline:AT5G47320
            Uniprot:P39697
        Length = 212

 Score = 187 (70.9 bits), Expect = 1.1e-14, P = 1.1e-14
 Identities = 40/105 (38%), Positives = 66/105 (62%)

Query:   162 GGNNLQNSMVPSDSSEASPTQIKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDK 221
             GG+  Q   VP  S   S   + TK L++ GLS  T E +L+ AF  F  + E +++ +K
Sbjct:     8 GGHWKQGVNVPVSSMLGSLRYMSTK-LYIGGLSPGTDEHSLKDAFSSFNGVTEARVMTNK 66

Query:   222 ISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVDVAKTTP 266
             ++ RS+GY F+ + +E++A++A+  MNG+ +NG+ I V+VAK  P
Sbjct:    67 VTGRSRGYGFVNFISEDSANSAISAMNGQELNGFNISVNVAKDWP 111


>TAIR|locus:2076096 [details] [associations]
            symbol:GRP4 "glycine-rich RNA-binding protein 4"
            species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
            binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS;IDA]
            [GO:0005739 "mitochondrion" evidence=IDA] [GO:0003690
            "double-stranded DNA binding" evidence=IDA] [GO:0003697
            "single-stranded DNA binding" evidence=IDA] [GO:0006970 "response
            to osmotic stress" evidence=IMP] [GO:0009409 "response to cold"
            evidence=IEP] [GO:0009414 "response to water deprivation"
            evidence=IEP] [GO:0009651 "response to salt stress" evidence=IMP]
            [GO:0006364 "rRNA processing" evidence=RCA] [GO:0009664 "plant-type
            cell wall organization" evidence=RCA] [GO:0042545 "cell wall
            modification" evidence=RCA] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005739
            EMBL:CP002686 GO:GO:0000166 GO:GO:0009651 Gene3D:3.30.70.330
            GO:GO:0003723 GO:GO:0003690 GO:GO:0003697 EMBL:AP001297
            eggNOG:COG0724 HOGENOM:HOG000276232 HSSP:Q14103
            ProtClustDB:PLN03134 EMBL:AY070755 EMBL:AY097374 EMBL:AY085838
            IPI:IPI00523873 RefSeq:NP_189025.1 RefSeq:NP_850629.1
            UniGene:At.8272 ProteinModelPortal:Q9LIS2 SMR:Q9LIS2 STRING:Q9LIS2
            PaxDb:Q8LDS0 PRIDE:Q9LIS2 EnsemblPlants:AT3G23830.1
            EnsemblPlants:AT3G23830.2 GeneID:821966 KEGG:ath:AT3G23830
            GeneFarm:3951 TAIR:At3g23830 InParanoid:Q9LIS2 OMA:CEDSANN
            PhylomeDB:Q9LIS2 Genevestigator:Q9LIS2 Uniprot:Q9LIS2
        Length = 136

 Score = 183 (69.5 bits), Expect = 3.0e-14, P = 3.0e-14
 Identities = 42/108 (38%), Positives = 68/108 (62%)

Query:   167 QNSMVPSDSSEASPTQIKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRS 226
             Q+S  P  S   S  +  + KLFV GLS+ T + +L+ AF  FGE+ E  +I D+ + RS
Sbjct:    17 QSSNGPVTSMLGS-LRYMSSKLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRS 75

Query:   227 KGYAFIEYTTEEAASAALKEMNGKIINGWMIVVDVA---KTTPKYSRG 271
             +G+ F+ ++ E++A+ A+KEM+GK +NG  I V++A    + P+ S G
Sbjct:    76 RGFGFVSFSCEDSANNAIKEMDGKELNGRQIRVNLATERSSAPRSSFG 123


>TAIR|locus:2077137 [details] [associations]
            symbol:AT3G46020 species:3702 "Arabidopsis thaliana"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
            acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
            [GO:0005575 "cellular_component" evidence=ND] [GO:0008150
            "biological_process" evidence=ND] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL162459 eggNOG:COG0724
            HOGENOM:HOG000276232 HSSP:Q61474 EMBL:BT012586 EMBL:BT015095
            IPI:IPI00521590 RefSeq:NP_190188.1 UniGene:At.35968
            ProteinModelPortal:Q9LZT1 SMR:Q9LZT1 EnsemblPlants:AT3G46020.1
            GeneID:823745 KEGG:ath:AT3G46020 TAIR:At3g46020 InParanoid:Q9LZT1
            OMA:QIKEARL PhylomeDB:Q9LZT1 ProtClustDB:CLSN2915511
            Genevestigator:Q9LZT1 Uniprot:Q9LZT1
        Length = 102

 Score = 181 (68.8 bits), Expect = 4.9e-14, P = 4.9e-14
 Identities = 35/85 (41%), Positives = 58/85 (68%)

Query:   187 KLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKE 246
             +LFV+ LS YT++++LR  F  FG++ E ++I D  ++R KG+ FI + +E+ A  ALK 
Sbjct:     8 QLFVSRLSAYTTDQSLRQLFSPFGQIKEARLIRDSETQRPKGFGFITFDSEDDARKALKS 67

Query:   247 MNGKIINGWMIVVDVAKTTPKYSRG 271
             ++GKI++G +I V+VAK   +   G
Sbjct:    68 LDGKIVDGRLIFVEVAKNAEEVRAG 92


>TAIR|locus:2039590 [details] [associations]
            symbol:AT2G27330 species:3702 "Arabidopsis thaliana"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
            acid binding" evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM]
            [GO:0008150 "biological_process" evidence=ND] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 HOGENOM:HOG000276232 EMBL:BT025704
            IPI:IPI00525470 RefSeq:NP_565646.2 UniGene:At.38782
            ProteinModelPortal:Q1ECN0 SMR:Q1ECN0 IntAct:Q1ECN0
            EnsemblPlants:AT2G27330.1 GeneID:817276 KEGG:ath:AT2G27330
            TAIR:At2g27330 eggNOG:NOG290837 InParanoid:Q1ECN0 OMA:IMDKIRC
            PhylomeDB:Q1ECN0 ProtClustDB:CLSN2918107 Genevestigator:Q1ECN0
            Uniprot:Q1ECN0
        Length = 116

 Score = 180 (68.4 bits), Expect = 6.2e-14, P = 6.2e-14
 Identities = 31/76 (40%), Positives = 57/76 (75%)

Query:   188 LFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEM 247
             LFV G+SF ++E+TL  AF  +G++++V +IMDKI  R KG+A++ ++++E A  AL E+
Sbjct:    23 LFVKGISFSSTEETLTQAFSQYGQVLKVDVIMDKIRCRPKGFAYVTFSSKEEAEKALLEL 82

Query:   248 NGKIINGWMIVVDVAK 263
             N ++++G ++++D  K
Sbjct:    83 NAQLVDGRVVILDTTK 98


>TAIR|locus:2172144 [details] [associations]
            symbol:AT5G54580 species:3702 "Arabidopsis thaliana"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
            acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
            [GO:0008150 "biological_process" evidence=ND] [GO:0005739
            "mitochondrion" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005739
            EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AB016879 HOGENOM:HOG000276232
            HSSP:Q61474 UniGene:At.52694 EMBL:AY072101 EMBL:AY096589
            EMBL:AY085234 IPI:IPI00521049 RefSeq:NP_200269.1 UniGene:At.20805
            ProteinModelPortal:Q9FIU6 SMR:Q9FIU6 IntAct:Q9FIU6 PaxDb:Q9FIU6
            PRIDE:Q9FIU6 EnsemblPlants:AT5G54580.1 GeneID:835546
            KEGG:ath:AT5G54580 TAIR:At5g54580 eggNOG:NOG324885
            InParanoid:Q9FIU6 OMA:IKGMDGK PhylomeDB:Q9FIU6
            ProtClustDB:CLSN2696829 ArrayExpress:Q9FIU6 Genevestigator:Q9FIU6
            Uniprot:Q9FIU6
        Length = 156

 Score = 178 (67.7 bits), Expect = 1.0e-13, P = 1.0e-13
 Identities = 34/97 (35%), Positives = 58/97 (59%)

Query:   178 ASPTQIKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTE 237
             A P    +  LFV+GLS  T+ + LR AF  FGE+ + K++ D++S  SKG+ F+ Y T 
Sbjct:    48 ARPQAEPSTNLFVSGLSKRTTSEGLRTAFAQFGEVADAKVVTDRVSGYSKGFGFVRYATL 107

Query:   238 EAASAALKEMNGKIINGWMIVVDVAKTTPKYSRGRPR 274
             E ++  +  M+GK ++GW+I  + A+   +    +P+
Sbjct:   108 EDSAKGIAGMDGKFLDGWVIFAEYARPREQSQSYQPQ 144


>UNIPROTKB|F6RBQ9 [details] [associations]
            symbol:F6RBQ9 "Uncharacterized protein" species:9913 "Bos
            taurus" [GO:0043023 "ribosomal large subunit binding" evidence=IEA]
            [GO:0035196 "production of miRNAs involved in gene silencing by
            miRNA" evidence=IEA] [GO:0009409 "response to cold" evidence=IEA]
            [GO:0006412 "translation" evidence=IEA] [GO:0003676 "nucleic acid
            binding" evidence=IEA] [GO:0000166 "nucleotide binding"
            evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 GO:GO:0006412
            GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0003676
            GeneTree:ENSGT00700000104309 GO:GO:0035196 GO:GO:0043023
            OMA:SDAMRAM EMBL:DAAA02073061 IPI:IPI00691523
            Ensembl:ENSBTAT00000024034 Uniprot:F6RBQ9
        Length = 160

 Score = 177 (67.4 bits), Expect = 1.3e-13, P = 1.3e-13
 Identities = 37/85 (43%), Positives = 55/85 (64%)

Query:   187 KLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKE 246
             KLFV GL+F T E+ L   F  FG + EV ++ D+ ++RS+G+ FI +T  E AS A++ 
Sbjct:     7 KLFVGGLNFNTDERALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASNAMRA 66

Query:   247 MNGKIINGWMIVVDVAKTTPKYSRG 271
             MNG+ ++G  I VD A  + + SRG
Sbjct:    67 MNGESLDGRQIRVDHAGKSARGSRG 91


>MGI|MGI:1099460 [details] [associations]
            symbol:Rbm3 "RNA binding motif protein 3" species:10090 "Mus
            musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
            binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISO]
            [GO:0005737 "cytoplasm" evidence=ISO] [GO:0006412 "translation"
            evidence=IDA] [GO:0006417 "regulation of translation" evidence=IDA]
            [GO:0006950 "response to stress" evidence=IEA] [GO:0009409
            "response to cold" evidence=IDA] [GO:0015934 "large ribosomal
            subunit" evidence=ISO] [GO:0030425 "dendrite" evidence=ISO]
            [GO:0035196 "production of miRNAs involved in gene silencing by
            miRNA" evidence=IDA] [GO:0042995 "cell projection" evidence=IEA]
            [GO:0043023 "ribosomal large subunit binding" evidence=IPI]
            [GO:0045727 "positive regulation of translation" evidence=ISO]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 MGI:MGI:1099460 GO:GO:0005634 GO:GO:0005737
            GO:GO:0000166 GO:GO:0006412 GO:GO:0030425 GO:GO:0009409
            Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0045727 eggNOG:COG0724
            HOVERGEN:HBG107480 HOGENOM:HOG000276232 OrthoDB:EOG4HHP40
            GO:GO:0035196 GO:GO:0043023 CTD:5935 KO:K13186 EMBL:AB016424
            EMBL:AY052560 EMBL:BC006580 IPI:IPI00130883 RefSeq:NP_001159882.1
            RefSeq:NP_001159883.1 UniGene:Mm.128512 UniGene:Mm.360569
            ProteinModelPortal:O89086 SMR:O89086 IntAct:O89086 STRING:O89086
            PhosphoSite:O89086 REPRODUCTION-2DPAGE:IPI00130883 PaxDb:O89086
            PRIDE:O89086 Ensembl:ENSMUST00000115615 Ensembl:ENSMUST00000115619
            Ensembl:ENSMUST00000115621 GeneID:19652 KEGG:mmu:19652
            NextBio:296916 Bgee:O89086 CleanEx:MM_RBM3 Genevestigator:O89086
            GermOnline:ENSMUSG00000031167 Uniprot:O89086
        Length = 153

 Score = 176 (67.0 bits), Expect = 1.7e-13, P = 1.7e-13
 Identities = 37/85 (43%), Positives = 55/85 (64%)

Query:   187 KLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKE 246
             KLFV GL+F T E+ L   F  FG + EV ++ D+ ++RS+G+ FI +T  E AS A++ 
Sbjct:     7 KLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDAMRA 66

Query:   247 MNGKIINGWMIVVDVAKTTPKYSRG 271
             MNG+ ++G  I VD A  + + SRG
Sbjct:    67 MNGESLDGRQIRVDHAGKSARGSRG 91


>UNIPROTKB|P98179 [details] [associations]
            symbol:RBM3 "Putative RNA-binding protein 3" species:9606
            "Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=IEA] [GO:0006412 "translation"
            evidence=IEA] [GO:0009409 "response to cold" evidence=IEA]
            [GO:0035196 "production of miRNAs involved in gene silencing by
            miRNA" evidence=IEA] [GO:0043023 "ribosomal large subunit binding"
            evidence=IEA] [GO:0005634 "nucleus" evidence=ISS] [GO:0030425
            "dendrite" evidence=ISS] [GO:0006417 "regulation of translation"
            evidence=ISS] [GO:0045727 "positive regulation of translation"
            evidence=ISS] [GO:0005737 "cytoplasm" evidence=ISS] [GO:0015934
            "large ribosomal subunit" evidence=ISS] [GO:0006396 "RNA
            processing" evidence=TAS] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
            GO:GO:0005737 GO:GO:0000166 GO:GO:0006412 GO:GO:0030425
            GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0006396
            GO:GO:0045727 eggNOG:COG0724 GO:GO:0015934 HOVERGEN:HBG107480
            HOGENOM:HOG000276232 OrthoDB:EOG4HHP40 GO:GO:0035196 EMBL:AF196969
            GO:GO:0043023 EMBL:U28686 EMBL:BC006825 IPI:IPI00024320 PIR:G01859
            RefSeq:NP_006734.1 UniGene:Hs.301404 ProteinModelPortal:P98179
            SMR:P98179 IntAct:P98179 MINT:MINT-5002714 STRING:P98179
            PhosphoSite:P98179 DMDM:1710620 PaxDb:P98179 PeptideAtlas:P98179
            PRIDE:P98179 DNASU:5935 Ensembl:ENST00000376755
            Ensembl:ENST00000376759 GeneID:5935 KEGG:hsa:5935 UCSC:uc004dkf.2
            CTD:5935 GeneCards:GC0XP048432 HGNC:HGNC:9900 HPA:HPA003624
            MIM:300027 neXtProt:NX_P98179 PharmGKB:PA34265 InParanoid:P98179
            KO:K13186 OMA:SDAMRAM PhylomeDB:P98179 ChiTaRS:RBM3 GenomeRNAi:5935
            NextBio:23136 ArrayExpress:P98179 Bgee:P98179 CleanEx:HS_RBM3
            Genevestigator:P98179 GermOnline:ENSG00000102317 Uniprot:P98179
        Length = 157

 Score = 175 (66.7 bits), Expect = 2.3e-13, P = 2.3e-13
 Identities = 36/85 (42%), Positives = 55/85 (64%)

Query:   187 KLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKE 246
             KLFV GL+F T E+ L   F  FG + EV ++ D+ ++RS+G+ FI +T  E AS A++ 
Sbjct:     7 KLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASVAMRA 66

Query:   247 MNGKIINGWMIVVDVAKTTPKYSRG 271
             MNG+ ++G  I VD A  + + +RG
Sbjct:    67 MNGESLDGRQIRVDHAGKSARGTRG 91


>UNIPROTKB|I3L5X7 [details] [associations]
            symbol:RBM3 "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            GeneTree:ENSGT00700000104309 CTD:5935 KO:K13186 OMA:SDAMRAM
            EMBL:FP325173 RefSeq:NP_001230348.1 UniGene:Ssc.3311
            Ensembl:ENSSSCT00000030983 GeneID:100627807 KEGG:ssc:100627807
            Uniprot:I3L5X7
        Length = 156

 Score = 173 (66.0 bits), Expect = 4.0e-13, P = 4.0e-13
 Identities = 36/85 (42%), Positives = 55/85 (64%)

Query:   187 KLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKE 246
             KLFV GL+F T E+ L   F  FG + EV ++ D+ ++RS+G+ FI +T  E AS A++ 
Sbjct:     7 KLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASNAMRA 66

Query:   247 MNGKIINGWMIVVDVAKTTPKYSRG 271
             MNG+ ++G  I VD A  + + +RG
Sbjct:    67 MNGESLDGRQIRVDHAGKSARGTRG 91


>UNIPROTKB|G3V6P6 [details] [associations]
            symbol:Rbm3 "Putative RNA-binding protein 3" species:10116
            "Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0006412
            "translation" evidence=IEA] [GO:0009409 "response to cold"
            evidence=IEA] [GO:0035196 "production of miRNAs involved in gene
            silencing by miRNA" evidence=IEA] [GO:0043023 "ribosomal large
            subunit binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            RGD:620145 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            GeneTree:ENSGT00700000104309 CTD:5935 KO:K13186 OMA:SDAMRAM
            RefSeq:NP_446148.1 UniGene:Rn.18057 GeneID:114488 KEGG:rno:114488
            NextBio:618509 EMBL:CH474078 Ensembl:ENSRNOT00000007367
            Uniprot:G3V6P6
        Length = 156

 Score = 173 (66.0 bits), Expect = 4.0e-13, P = 4.0e-13
 Identities = 36/85 (42%), Positives = 55/85 (64%)

Query:   187 KLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKE 246
             KLFV GL+F T E+ L   F  FG + EV ++ D+ ++RS+G+ FI +T  E AS A++ 
Sbjct:     7 KLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDAMRA 66

Query:   247 MNGKIINGWMIVVDVAKTTPKYSRG 271
             MNG+ ++G  I VD A  + + +RG
Sbjct:    67 MNGESLDGRQIRVDHAGKSARGTRG 91


>UNIPROTKB|E2R771 [details] [associations]
            symbol:RBM3 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            GeneTree:ENSGT00700000104309 CTD:5935 KO:K13186 OMA:SDAMRAM
            EMBL:AAEX03026334 RefSeq:XP_863171.1 ProteinModelPortal:E2R771
            Ensembl:ENSCAFT00000024556 GeneID:609457 KEGG:cfa:609457
            Uniprot:E2R771
        Length = 162

 Score = 172 (65.6 bits), Expect = 5.3e-13, P = 5.3e-13
 Identities = 36/85 (42%), Positives = 55/85 (64%)

Query:   187 KLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKE 246
             KLFV GL+F T E+ L   F  FG + EV ++ D+ ++RS+G+ FI +T  E AS A++ 
Sbjct:     7 KLFVGGLNFNTDEQALEDHFRSFGPISEVVVVKDRETQRSRGFGFITFTDPEHASDAMRA 66

Query:   247 MNGKIINGWMIVVDVAKTTPKYSRG 271
             MNG+ ++G  I VD A  + + +RG
Sbjct:    67 MNGESLDGRQIRVDHAGKSARGTRG 91


>UNIPROTKB|Q28IQ9 [details] [associations]
            symbol:cirbp "Cold-inducible RNA-binding protein"
            species:8364 "Xenopus (Silurana) tropicalis" [GO:0003729 "mRNA
            binding" evidence=ISS] [GO:0003730 "mRNA 3'-UTR binding"
            evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0005737
            "cytoplasm" evidence=ISS] [GO:0007369 "gastrulation" evidence=ISS]
            [GO:0009409 "response to cold" evidence=ISS] [GO:0009790 "embryo
            development" evidence=ISS] [GO:0016477 "cell migration"
            evidence=ISS] [GO:0019899 "enzyme binding" evidence=ISS]
            [GO:0022008 "neurogenesis" evidence=ISS] [GO:0045727 "positive
            regulation of translation" evidence=ISS] [GO:0048255 "mRNA
            stabilization" evidence=ISS] [GO:0048793 "pronephros development"
            evidence=ISS] [GO:0060212 "negative regulation of
            nuclear-transcribed mRNA poly(A) tail shortening" evidence=ISS]
            [GO:0005840 "ribosome" evidence=ISS] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0005634 GO:GO:0005737 GO:GO:0005654 GO:GO:0016477
            GO:GO:0022008 GO:GO:0000166 GO:GO:0009409 Gene3D:3.30.70.330
            GO:GO:0019899 GO:GO:0048255 GO:GO:0003730 GO:GO:0045727
            GO:GO:0007369 eggNOG:COG0724 GO:GO:0048793 HOVERGEN:HBG107480
            GO:GO:0060212 KO:K13195 CTD:1153 HOGENOM:HOG000276232 EMBL:CR760272
            RefSeq:NP_001017228.1 UniGene:Str.47654 ProteinModelPortal:Q28IQ9
            SMR:Q28IQ9 STRING:Q28IQ9 GeneID:549982 KEGG:xtr:549982
            Xenbase:XB-GENE-492781 Uniprot:Q28IQ9
        Length = 166

 Score = 172 (65.6 bits), Expect = 5.3e-13, P = 5.3e-13
 Identities = 35/85 (41%), Positives = 53/85 (62%)

Query:   187 KLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKE 246
             KLFV GL+F T+E++L   F  +G++ EV ++ D+ SKRS+G+ F+ +   E A  A+  
Sbjct:     7 KLFVGGLNFETTEESLEQVFSKYGQVAEVVVVKDRESKRSRGFGFVTFENPEDAKDAMMA 66

Query:   247 MNGKIINGWMIVVDVAKTTPKYSRG 271
             MNGK ++G  I VD A  +    RG
Sbjct:    67 MNGKSVDGRQIRVDQAGKSSNDRRG 91


>RGD|620145 [details] [associations]
            symbol:Rbm3 "RNA binding motif (RNP1, RRM) protein 3"
            species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005515
            "protein binding" evidence=IPI] [GO:0005634 "nucleus" evidence=IDA]
            [GO:0005737 "cytoplasm" evidence=IDA] [GO:0006412 "translation"
            evidence=ISO] [GO:0006417 "regulation of translation"
            evidence=ISO;ISS] [GO:0006950 "response to stress" evidence=IEA]
            [GO:0009409 "response to cold" evidence=ISO] [GO:0015934 "large
            ribosomal subunit" evidence=IDA] [GO:0030425 "dendrite"
            evidence=IDA] [GO:0035196 "production of miRNAs involved in gene
            silencing by miRNA" evidence=ISO] [GO:0043023 "ribosomal large
            subunit binding" evidence=ISO] [GO:0045727 "positive regulation of
            translation" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:620145 GO:GO:0005634
            GO:GO:0005737 GO:GO:0000166 GO:GO:0006412 GO:GO:0030425
            GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0045727
            eggNOG:COG0724 HOVERGEN:HBG107480 HSSP:P09651 HOGENOM:HOG000276232
            OrthoDB:EOG4HHP40 GO:GO:0035196 GO:GO:0043023 CTD:5935 KO:K13186
            EMBL:FM093406 EMBL:AF355190 IPI:IPI00367437 IPI:IPI00955177
            RefSeq:NP_446148.1 UniGene:Rn.18057 ProteinModelPortal:Q925G0
            MINT:MINT-4611770 STRING:Q925G0 PRIDE:Q925G0 GeneID:114488
            KEGG:rno:114488 UCSC:RGD:620145 InParanoid:Q925G0 NextBio:618509
            Genevestigator:Q925G0 Uniprot:Q925G0
        Length = 155

 Score = 169 (64.5 bits), Expect = 1.2e-12, P = 1.2e-12
 Identities = 35/85 (41%), Positives = 54/85 (63%)

Query:   187 KLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKE 246
             KLFV GL+F T E+ L   F  FG + EV ++ D+ ++RS+G+ FI +T  E AS  ++ 
Sbjct:     7 KLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDVMRA 66

Query:   247 MNGKIINGWMIVVDVAKTTPKYSRG 271
             MNG+ ++G  I VD A  + + +RG
Sbjct:    67 MNGESLDGRQIRVDHAGKSARGTRG 91


>UNIPROTKB|E2R228 [details] [associations]
            symbol:E2R228 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            GeneTree:ENSGT00700000104309 EMBL:AAEX03026350
            Ensembl:ENSCAFT00000025375 OMA:SDVEYRC Uniprot:E2R228
        Length = 149

 Score = 168 (64.2 bits), Expect = 1.6e-12, P = 1.6e-12
 Identities = 35/84 (41%), Positives = 54/84 (64%)

Query:   188 LFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEM 247
             LF+ GL+F T+E+ L   F  FG + EV ++ D+ ++RS+G+ FI +T  E AS A++ M
Sbjct:     8 LFLGGLNFNTNEQALEDHFSSFGPISEVVVVKDRETQRSRGFCFITFTNPEHASDAMRPM 67

Query:   248 NGKIINGWMIVVDVAKTTPKYSRG 271
             NGK ++G  I VD A    + +RG
Sbjct:    68 NGKSLDGRQIRVDHAGKLARGTRG 91


>UNIPROTKB|Q3SZN4 [details] [associations]
            symbol:CIRBP "Uncharacterized protein" species:9913 "Bos
            taurus" [GO:0070181 "SSU rRNA binding" evidence=IEA] [GO:0048255
            "mRNA stabilization" evidence=IEA] [GO:0045727 "positive regulation
            of translation" evidence=IEA] [GO:0034063 "stress granule assembly"
            evidence=IEA] [GO:0030371 "translation repressor activity"
            evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
            evidence=IEA] [GO:0009411 "response to UV" evidence=IEA]
            [GO:0003730 "mRNA 3'-UTR binding" evidence=IEA] [GO:0000166
            "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0009411 GO:GO:0000166 GO:GO:0030371 Gene3D:3.30.70.330
            GO:GO:0048255 GO:GO:0003730 GO:GO:0045727 GO:GO:0010494
            GO:GO:0034063 eggNOG:COG0724 GO:GO:0070181 KO:K13195 CTD:1153
            HOGENOM:HOG000276232 OMA:ENRSRGY OrthoDB:EOG4HHP40
            GeneTree:ENSGT00700000104309 EMBL:DAAA02020258 EMBL:BC102773
            IPI:IPI00702406 RefSeq:NP_001029450.1 UniGene:Bt.23273 SMR:Q3SZN4
            Ensembl:ENSBTAT00000004477 GeneID:507120 KEGG:bta:507120
            InParanoid:Q3SZN4 NextBio:20867909 Uniprot:Q3SZN4
        Length = 213

 Score = 167 (63.8 bits), Expect = 2.1e-12, P = 2.1e-12
 Identities = 35/86 (40%), Positives = 56/86 (65%)

Query:   187 KLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKE 246
             KLFV GLSF T+E++L   F  +G++ EV ++ D+ ++RS+G+ F+ +   + A  A+  
Sbjct:     7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66

Query:   247 MNGKIINGWMIVVDVA-KTTPKYSRG 271
             MNGK ++G  I VD A K++   SRG
Sbjct:    67 MNGKSVDGRQIRVDQAGKSSDNRSRG 92


>UNIPROTKB|E2R6G2 [details] [associations]
            symbol:CIRBP "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            ProteinModelPortal:E2R6G2 Ensembl:ENSCAFT00000031013 Uniprot:E2R6G2
        Length = 172

 Score = 167 (63.8 bits), Expect = 2.1e-12, P = 2.1e-12
 Identities = 35/86 (40%), Positives = 56/86 (65%)

Query:   187 KLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKE 246
             KLFV GLSF T+E++L   F  +G++ EV ++ D+ ++RS+G+ F+ +   + A  A+  
Sbjct:     7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66

Query:   247 MNGKIINGWMIVVDVA-KTTPKYSRG 271
             MNGK ++G  I VD A K++   SRG
Sbjct:    67 MNGKSVDGRQIRVDQAGKSSDNRSRG 92


>UNIPROTKB|F6XHA7 [details] [associations]
            symbol:CIRBP "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K13195 CTD:1153
            OMA:ENRSRGY GeneTree:ENSGT00700000104309 Ensembl:ENSCAFT00000031013
            EMBL:AAEX03012655 RefSeq:XP_868600.1 GeneID:476755 KEGG:cfa:476755
            Uniprot:F6XHA7
        Length = 185

 Score = 167 (63.8 bits), Expect = 2.1e-12, P = 2.1e-12
 Identities = 35/86 (40%), Positives = 56/86 (65%)

Query:   187 KLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKE 246
             KLFV GLSF T+E++L   F  +G++ EV ++ D+ ++RS+G+ F+ +   + A  A+  
Sbjct:     7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66

Query:   247 MNGKIINGWMIVVDVA-KTTPKYSRG 271
             MNGK ++G  I VD A K++   SRG
Sbjct:    67 MNGKSVDGRQIRVDQAGKSSDNRSRG 92


>UNIPROTKB|K7EJV5 [details] [associations]
            symbol:CIRBP "Cold-inducible RNA-binding protein"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
            HGNC:HGNC:1982 Ensembl:ENST00000588411 Uniprot:K7EJV5
        Length = 105

 Score = 167 (63.8 bits), Expect = 2.1e-12, P = 2.1e-12
 Identities = 35/86 (40%), Positives = 56/86 (65%)

Query:   187 KLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKE 246
             KLFV GLSF T+E++L   F  +G++ EV ++ D+ ++RS+G+ F+ +   + A  A+  
Sbjct:     7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66

Query:   247 MNGKIINGWMIVVDVA-KTTPKYSRG 271
             MNGK ++G  I VD A K++   SRG
Sbjct:    67 MNGKSVDGRQIRVDQAGKSSDNRSRG 92


>UNIPROTKB|K7EMY9 [details] [associations]
            symbol:CIRBP "Cold-inducible RNA-binding protein"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
            HGNC:HGNC:1982 Ensembl:ENST00000586548 Uniprot:K7EMY9
        Length = 159

 Score = 167 (63.8 bits), Expect = 2.1e-12, P = 2.1e-12
 Identities = 35/86 (40%), Positives = 56/86 (65%)

Query:   187 KLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKE 246
             KLFV GLSF T+E++L   F  +G++ EV ++ D+ ++RS+G+ F+ +   + A  A+  
Sbjct:     7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66

Query:   247 MNGKIINGWMIVVDVA-KTTPKYSRG 271
             MNGK ++G  I VD A K++   SRG
Sbjct:    67 MNGKSVDGRQIRVDQAGKSSDNRSRG 92


>UNIPROTKB|K7EPM4 [details] [associations]
            symbol:CIRBP "Cold-inducible RNA-binding protein"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
            HGNC:HGNC:1982 Ensembl:ENST00000585913 Ensembl:ENST00000586636
            Ensembl:ENST00000586773 Ensembl:ENST00000589235
            Ensembl:ENST00000589686 Ensembl:ENST00000591935 Uniprot:K7EPM4
        Length = 168

 Score = 167 (63.8 bits), Expect = 2.1e-12, P = 2.1e-12
 Identities = 35/86 (40%), Positives = 56/86 (65%)

Query:   187 KLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKE 246
             KLFV GLSF T+E++L   F  +G++ EV ++ D+ ++RS+G+ F+ +   + A  A+  
Sbjct:     7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66

Query:   247 MNGKIINGWMIVVDVA-KTTPKYSRG 271
             MNGK ++G  I VD A K++   SRG
Sbjct:    67 MNGKSVDGRQIRVDQAGKSSDNRSRG 92


>UNIPROTKB|K7EQR7 [details] [associations]
            symbol:CIRBP "Cold-inducible RNA-binding protein"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
            HGNC:HGNC:1982 Ensembl:ENST00000585914 Uniprot:K7EQR7
        Length = 202

 Score = 167 (63.8 bits), Expect = 2.1e-12, P = 2.1e-12
 Identities = 35/86 (40%), Positives = 56/86 (65%)

Query:   187 KLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKE 246
             KLFV GLSF T+E++L   F  +G++ EV ++ D+ ++RS+G+ F+ +   + A  A+  
Sbjct:     7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66

Query:   247 MNGKIINGWMIVVDVA-KTTPKYSRG 271
             MNGK ++G  I VD A K++   SRG
Sbjct:    67 MNGKSVDGRQIRVDQAGKSSDNRSRG 92


>UNIPROTKB|K7ER40 [details] [associations]
            symbol:CIRBP "Cold-inducible RNA-binding protein"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
            HGNC:HGNC:1982 Ensembl:ENST00000591659 Uniprot:K7ER40
        Length = 174

 Score = 167 (63.8 bits), Expect = 2.1e-12, P = 2.1e-12
 Identities = 35/86 (40%), Positives = 56/86 (65%)

Query:   187 KLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKE 246
             KLFV GLSF T+E++L   F  +G++ EV ++ D+ ++RS+G+ F+ +   + A  A+  
Sbjct:     7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66

Query:   247 MNGKIINGWMIVVDVA-KTTPKYSRG 271
             MNGK ++G  I VD A K++   SRG
Sbjct:    67 MNGKSVDGRQIRVDQAGKSSDNRSRG 92


>UNIPROTKB|Q14011 [details] [associations]
            symbol:CIRBP "Cold-inducible RNA-binding protein"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0005654 "nucleoplasm" evidence=IEA] [GO:0005737
            "cytoplasm" evidence=ISS;IDA] [GO:0048255 "mRNA stabilization"
            evidence=IDA] [GO:0070181 "SSU rRNA binding" evidence=IDA]
            [GO:0030371 "translation repressor activity" evidence=ISS]
            [GO:0034063 "stress granule assembly" evidence=ISS] [GO:0009411
            "response to UV" evidence=IDA] [GO:0010494 "cytoplasmic stress
            granule" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS;IDA]
            [GO:0005515 "protein binding" evidence=IPI] [GO:0003730 "mRNA
            3'-UTR binding" evidence=IDA] [GO:0045727 "positive regulation of
            translation" evidence=IDA] [GO:0009409 "response to cold"
            evidence=TAS] [GO:0017148 "negative regulation of translation"
            evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0009411
            GO:GO:0005654 GO:GO:0000166 GO:GO:0030371 GO:GO:0009409
            Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730 GO:GO:0045727
            GO:GO:0010494 GO:GO:0034063 eggNOG:COG0724 HOVERGEN:HBG107480
            GO:GO:0070181 KO:K13195 CTD:1153 EMBL:D78134 EMBL:AF021336
            EMBL:AC004258 EMBL:BC000403 EMBL:BC000901 IPI:IPI00641579
            RefSeq:NP_001271.1 UniGene:Hs.618145 UniGene:Hs.634522 PDB:1X5S
            PDBsum:1X5S ProteinModelPortal:Q14011 SMR:Q14011 IntAct:Q14011
            MINT:MINT-5004534 STRING:Q14011 PhosphoSite:Q14011 DMDM:5921786
            REPRODUCTION-2DPAGE:IPI00180954 PaxDb:Q14011 PRIDE:Q14011
            DNASU:1153 Ensembl:ENST00000320936 GeneID:1153 KEGG:hsa:1153
            UCSC:uc002lrr.4 GeneCards:GC19P001269 HGNC:HGNC:1982 MIM:602649
            neXtProt:NX_Q14011 PharmGKB:PA26519 HOGENOM:HOG000276232
            InParanoid:Q14011 OMA:ENRSRGY OrthoDB:EOG4HHP40 PhylomeDB:Q14011
            ChiTaRS:CIRBP EvolutionaryTrace:Q14011 GenomeRNAi:1153 NextBio:4788
            ArrayExpress:Q14011 Bgee:Q14011 CleanEx:HS_CIRBP
            Genevestigator:Q14011 GermOnline:ENSG00000099622 Uniprot:Q14011
        Length = 172

 Score = 167 (63.8 bits), Expect = 2.1e-12, P = 2.1e-12
 Identities = 35/86 (40%), Positives = 56/86 (65%)

Query:   187 KLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKE 246
             KLFV GLSF T+E++L   F  +G++ EV ++ D+ ++RS+G+ F+ +   + A  A+  
Sbjct:     7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66

Query:   247 MNGKIINGWMIVVDVA-KTTPKYSRG 271
             MNGK ++G  I VD A K++   SRG
Sbjct:    67 MNGKSVDGRQIRVDQAGKSSDNRSRG 92


>UNIPROTKB|F1S6R1 [details] [associations]
            symbol:CIRBP "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0070181 "SSU rRNA binding" evidence=IEA] [GO:0048255
            "mRNA stabilization" evidence=IEA] [GO:0045727 "positive regulation
            of translation" evidence=IEA] [GO:0034063 "stress granule assembly"
            evidence=IEA] [GO:0030371 "translation repressor activity"
            evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
            evidence=IEA] [GO:0009411 "response to UV" evidence=IEA]
            [GO:0003730 "mRNA 3'-UTR binding" evidence=IEA] [GO:0000166
            "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0009411 GO:GO:0000166 GO:GO:0030371 Gene3D:3.30.70.330
            GO:GO:0048255 GO:GO:0003730 GO:GO:0045727 GO:GO:0010494
            GO:GO:0034063 GO:GO:0070181 OMA:ENRSRGY
            GeneTree:ENSGT00700000104309 EMBL:CU929580
            Ensembl:ENSSSCT00000014671 Uniprot:F1S6R1
        Length = 172

 Score = 167 (63.8 bits), Expect = 2.1e-12, P = 2.1e-12
 Identities = 35/86 (40%), Positives = 56/86 (65%)

Query:   187 KLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKE 246
             KLFV GLSF T+E++L   F  +G++ EV ++ D+ ++RS+G+ F+ +   + A  A+  
Sbjct:     7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66

Query:   247 MNGKIINGWMIVVDVA-KTTPKYSRG 271
             MNGK ++G  I VD A K++   SRG
Sbjct:    67 MNGKSVDGRQIRVDQAGKSSDNRSRG 92


>UNIPROTKB|Q5RF83 [details] [associations]
            symbol:CIRBP "Cold-inducible RNA-binding protein"
            species:9601 "Pongo abelii" [GO:0003730 "mRNA 3'-UTR binding"
            evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0005737
            "cytoplasm" evidence=ISS] [GO:0009411 "response to UV"
            evidence=ISS] [GO:0010494 "cytoplasmic stress granule"
            evidence=ISS] [GO:0017148 "negative regulation of translation"
            evidence=ISS] [GO:0030371 "translation repressor activity"
            evidence=ISS] [GO:0034063 "stress granule assembly" evidence=ISS]
            [GO:0045727 "positive regulation of translation" evidence=ISS]
            [GO:0048255 "mRNA stabilization" evidence=ISS] [GO:0070181 "SSU
            rRNA binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
            GO:GO:0009411 GO:GO:0005654 GO:GO:0006950 GO:GO:0000166
            GO:GO:0030371 Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730
            GO:GO:0045727 GO:GO:0010494 GO:GO:0034063 HOVERGEN:HBG107480
            GO:GO:0070181 KO:K13195 CTD:1153 EMBL:CR857278
            RefSeq:NP_001124692.1 UniGene:Pab.19491 ProteinModelPortal:Q5RF83
            SMR:Q5RF83 PRIDE:Q5RF83 GeneID:100171539 KEGG:pon:100171539
            Uniprot:Q5RF83
        Length = 172

 Score = 167 (63.8 bits), Expect = 2.1e-12, P = 2.1e-12
 Identities = 35/86 (40%), Positives = 56/86 (65%)

Query:   187 KLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKE 246
             KLFV GLSF T+E++L   F  +G++ EV ++ D+ ++RS+G+ F+ +   + A  A+  
Sbjct:     7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66

Query:   247 MNGKIINGWMIVVDVA-KTTPKYSRG 271
             MNGK ++G  I VD A K++   SRG
Sbjct:    67 MNGKSVDGRQIRVDQAGKSSDNRSRG 92


>UNIPROTKB|P60826 [details] [associations]
            symbol:CIRBP "Cold-inducible RNA-binding protein"
            species:10029 "Cricetulus griseus" [GO:0003730 "mRNA 3'-UTR
            binding" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
            [GO:0005737 "cytoplasm" evidence=ISS] [GO:0009411 "response to UV"
            evidence=ISS] [GO:0010494 "cytoplasmic stress granule"
            evidence=ISS] [GO:0017148 "negative regulation of translation"
            evidence=ISS] [GO:0030371 "translation repressor activity"
            evidence=ISS] [GO:0034063 "stress granule assembly" evidence=ISS]
            [GO:0045727 "positive regulation of translation" evidence=ISS]
            [GO:0048255 "mRNA stabilization" evidence=ISS] [GO:0070181 "SSU
            rRNA binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
            GO:GO:0009411 GO:GO:0005654 GO:GO:0006950 GO:GO:0000166
            GO:GO:0030371 Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730
            GO:GO:0045727 GO:GO:0010494 GO:GO:0034063 HOVERGEN:HBG107480
            GO:GO:0070181 EMBL:AY359860 RefSeq:NP_001231002.1
            ProteinModelPortal:P60826 SMR:P60826 PRIDE:P60826 GeneID:100689075
            CTD:1153 Uniprot:P60826
        Length = 172

 Score = 166 (63.5 bits), Expect = 2.7e-12, P = 2.7e-12
 Identities = 35/86 (40%), Positives = 55/86 (63%)

Query:   187 KLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKE 246
             KLFV GLSF T+E+ L   F  +G++ EV ++ D+ ++RS+G+ F+ +   + A  A+  
Sbjct:     7 KLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66

Query:   247 MNGKIINGWMIVVDVA-KTTPKYSRG 271
             MNGK ++G  I VD A K++   SRG
Sbjct:    67 MNGKSVDGRQIRVDQAGKSSDNRSRG 92


>MGI|MGI:893588 [details] [associations]
            symbol:Cirbp "cold inducible RNA binding protein"
            species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=IEA] [GO:0003730 "mRNA 3'-UTR
            binding" evidence=ISO] [GO:0005634 "nucleus" evidence=ISO;IDA]
            [GO:0005737 "cytoplasm" evidence=ISO;IDA] [GO:0006950 "response to
            stress" evidence=IEA] [GO:0009411 "response to UV" evidence=ISO]
            [GO:0010494 "cytoplasmic stress granule" evidence=IDA] [GO:0017148
            "negative regulation of translation" evidence=IDA] [GO:0030371
            "translation repressor activity" evidence=IDA] [GO:0034063 "stress
            granule assembly" evidence=IDA] [GO:0045727 "positive regulation of
            translation" evidence=ISO] [GO:0048255 "mRNA stabilization"
            evidence=ISO] [GO:0070181 "SSU rRNA binding" evidence=ISO]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 MGI:MGI:893588 GO:GO:0005634 GO:GO:0009411
            GO:GO:0005654 GO:GO:0000166 GO:GO:0030371 GO:GO:0009409
            Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730 GO:GO:0045727
            GO:GO:0010494 GO:GO:0034063 eggNOG:COG0724 HOVERGEN:HBG107480
            GO:GO:0070181 KO:K13195 CTD:1153 HOGENOM:HOG000276232 OMA:ENRSRGY
            OrthoDB:EOG4HHP40 ChiTaRS:CIRBP EMBL:D78135 EMBL:AK014655
            EMBL:AK132584 EMBL:BC075699 IPI:IPI00121073 RefSeq:NP_031731.1
            UniGene:Mm.17898 ProteinModelPortal:P60824 SMR:P60824 STRING:P60824
            PhosphoSite:P60824 PaxDb:P60824 PRIDE:P60824
            Ensembl:ENSMUST00000105365 GeneID:12696 KEGG:mmu:12696
            UCSC:uc007gce.1 GeneTree:ENSGT00700000104309 InParanoid:P60824
            NextBio:281950 Bgee:P60824 CleanEx:MM_CIRBP Genevestigator:P60824
            GermOnline:ENSMUSG00000045193 Uniprot:P60824
        Length = 172

 Score = 166 (63.5 bits), Expect = 2.7e-12, P = 2.7e-12
 Identities = 35/86 (40%), Positives = 55/86 (63%)

Query:   187 KLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKE 246
             KLFV GLSF T+E+ L   F  +G++ EV ++ D+ ++RS+G+ F+ +   + A  A+  
Sbjct:     7 KLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66

Query:   247 MNGKIINGWMIVVDVA-KTTPKYSRG 271
             MNGK ++G  I VD A K++   SRG
Sbjct:    67 MNGKSVDGRQIRVDQAGKSSDNRSRG 92


>RGD|620756 [details] [associations]
            symbol:Cirbp "cold inducible RNA binding protein" species:10116
            "Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003730 "mRNA 3'-UTR binding" evidence=ISO;ISS] [GO:0005634
            "nucleus" evidence=ISO;ISS] [GO:0005654 "nucleoplasm" evidence=IEA]
            [GO:0005737 "cytoplasm" evidence=ISO;ISS] [GO:0009409 "response to
            cold" evidence=IEP] [GO:0009411 "response to UV" evidence=ISO;ISS]
            [GO:0010494 "cytoplasmic stress granule" evidence=ISO;ISS]
            [GO:0017148 "negative regulation of translation" evidence=ISO]
            [GO:0030371 "translation repressor activity" evidence=ISO;ISS]
            [GO:0034063 "stress granule assembly" evidence=ISO;ISS] [GO:0045727
            "positive regulation of translation" evidence=ISO;ISS] [GO:0048255
            "mRNA stabilization" evidence=ISO;ISS] [GO:0070181 "SSU rRNA
            binding" evidence=ISO;ISS] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:620756 GO:GO:0005634
            GO:GO:0009411 GO:GO:0005654 GO:GO:0000166 GO:GO:0030371
            GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730
            GO:GO:0045727 GO:GO:0010494 GO:GO:0034063 eggNOG:COG0724
            HOVERGEN:HBG107480 GO:GO:0070181 HOGENOM:HOG000276232
            OrthoDB:EOG4HHP40 GeneTree:ENSGT00700000104309 EMBL:AB000362
            IPI:IPI00201031 UniGene:Rn.28931 ProteinModelPortal:P60825
            SMR:P60825 IntAct:P60825 STRING:P60825 PRIDE:P60825
            Ensembl:ENSRNOT00000021648 UCSC:RGD:620756 InParanoid:P60825
            Genevestigator:P60825 GermOnline:ENSRNOG00000015999 Uniprot:P60825
        Length = 172

 Score = 166 (63.5 bits), Expect = 2.7e-12, P = 2.7e-12
 Identities = 35/86 (40%), Positives = 55/86 (63%)

Query:   187 KLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKE 246
             KLFV GLSF T+E+ L   F  +G++ EV ++ D+ ++RS+G+ F+ +   + A  A+  
Sbjct:     7 KLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66

Query:   247 MNGKIINGWMIVVDVA-KTTPKYSRG 271
             MNGK ++G  I VD A K++   SRG
Sbjct:    67 MNGKSVDGRQIRVDQAGKSSDNRSRG 92


>UNIPROTKB|Q9PTX2 [details] [associations]
            symbol:cirbp "Cold-inducible RNA-binding protein"
            species:8400 "Rana catesbeiana" [GO:0003729 "mRNA binding"
            evidence=ISS] [GO:0003730 "mRNA 3'-UTR binding" evidence=ISS]
            [GO:0005634 "nucleus" evidence=ISS] [GO:0005737 "cytoplasm"
            evidence=ISS] [GO:0007369 "gastrulation" evidence=ISS] [GO:0009409
            "response to cold" evidence=ISS] [GO:0009790 "embryo development"
            evidence=ISS] [GO:0016477 "cell migration" evidence=ISS]
            [GO:0019899 "enzyme binding" evidence=ISS] [GO:0022008
            "neurogenesis" evidence=ISS] [GO:0042750 "hibernation"
            evidence=IEP] [GO:0045727 "positive regulation of translation"
            evidence=ISS] [GO:0048255 "mRNA stabilization" evidence=ISS]
            [GO:0048793 "pronephros development" evidence=ISS] [GO:0060212
            "negative regulation of nuclear-transcribed mRNA poly(A) tail
            shortening" evidence=ISS] [GO:0005840 "ribosome" evidence=ISS]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0005654
            GO:GO:0016477 GO:GO:0022008 GO:GO:0000166 GO:GO:0009409
            Gene3D:3.30.70.330 GO:GO:0019899 GO:GO:0048255 GO:GO:0003730
            GO:GO:0045727 GO:GO:0007369 GO:GO:0048793 HOVERGEN:HBG107480
            GO:GO:0060212 HSSP:P09651 EMBL:AB025351 ProteinModelPortal:Q9PTX2
            SMR:Q9PTX2 GO:GO:0042750 Uniprot:Q9PTX2
        Length = 164

 Score = 165 (63.1 bits), Expect = 3.6e-12, P = 3.6e-12
 Identities = 35/85 (41%), Positives = 51/85 (60%)

Query:   187 KLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKE 246
             KLFV GLSF T E+ L   F  +G++ EV ++ D+ +KRS+G+ F+ +   E A  A+  
Sbjct:     7 KLFVGGLSFDTDEQCLETVFSKYGQIQEVVVVKDRETKRSRGFGFVTFENCEDAKDAMAG 66

Query:   247 MNGKIINGWMIVVDVAKTTPKYSRG 271
             MNGK ++G  I VD A  +    RG
Sbjct:    67 MNGKTVDGRQIRVDQAGKSSNDRRG 91


>UNIPROTKB|Q9DED4 [details] [associations]
            symbol:cirbp-b "Cold-inducible RNA-binding protein B"
            species:8355 "Xenopus laevis" [GO:0003729 "mRNA binding"
            evidence=IDA] [GO:0003730 "mRNA 3'-UTR binding" evidence=ISS]
            [GO:0005515 "protein binding" evidence=IPI] [GO:0005634 "nucleus"
            evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0007369
            "gastrulation" evidence=IMP] [GO:0009409 "response to cold"
            evidence=ISS] [GO:0009790 "embryo development" evidence=IMP]
            [GO:0016477 "cell migration" evidence=IMP] [GO:0019899 "enzyme
            binding" evidence=IPI] [GO:0022008 "neurogenesis" evidence=IMP]
            [GO:0045727 "positive regulation of translation" evidence=ISS]
            [GO:0048255 "mRNA stabilization" evidence=IGI;IMP] [GO:0048793
            "pronephros development" evidence=ISS] [GO:0060212 "negative
            regulation of nuclear-transcribed mRNA poly(A) tail shortening"
            evidence=IMP] [GO:0005840 "ribosome" evidence=IDA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0005654
            GO:GO:0016477 GO:GO:0022008 GO:GO:0000166 GO:GO:0009409
            Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730 GO:GO:0045727
            GO:GO:0007369 GO:GO:0048793 HOVERGEN:HBG107480 GO:GO:0060212
            EMBL:AB044535 EMBL:BC054250 RefSeq:NP_001079794.1 UniGene:Xl.8151
            HSSP:P09651 ProteinModelPortal:Q9DED4 SMR:Q9DED4 MINT:MINT-274223
            PRIDE:Q9DED4 GeneID:379484 KEGG:xla:379484 CTD:379484
            Xenbase:XB-GENE-492785 KO:K13195 Uniprot:Q9DED4
        Length = 166

 Score = 162 (62.1 bits), Expect = 8.1e-12, P = 8.1e-12
 Identities = 32/85 (37%), Positives = 53/85 (62%)

Query:   187 KLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKE 246
             KLF+ GL+F T+E++L   F  +G++ EV ++ D+ +KRS+G+ F+ +   + A  A+  
Sbjct:     6 KLFIGGLNFDTNEESLEQVFSKYGQISEVVVVKDRETKRSRGFGFVTFENPDDAKDAMMA 65

Query:   247 MNGKIINGWMIVVDVAKTTPKYSRG 271
             MNGK ++G  I VD A  +    RG
Sbjct:    66 MNGKAVDGRQIRVDQAGKSSGDRRG 90


>UNIPROTKB|H9KZV5 [details] [associations]
            symbol:CIRBP "Uncharacterized protein" species:9031 "Gallus
            gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003730
            "mRNA 3'-UTR binding" evidence=IEA] [GO:0009411 "response to UV"
            evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
            evidence=IEA] [GO:0030371 "translation repressor activity"
            evidence=IEA] [GO:0034063 "stress granule assembly" evidence=IEA]
            [GO:0045727 "positive regulation of translation" evidence=IEA]
            [GO:0048255 "mRNA stabilization" evidence=IEA] [GO:0070181 "SSU
            rRNA binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 OMA:ENRSRGY
            GeneTree:ENSGT00700000104309 EMBL:AADN02030141 EMBL:AADN02030142
            Ensembl:ENSGALT00000019966 Uniprot:H9KZV5
        Length = 190

 Score = 161 (61.7 bits), Expect = 1.1e-11, P = 1.1e-11
 Identities = 34/86 (39%), Positives = 55/86 (63%)

Query:   187 KLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKE 246
             KL V GLSF T+E++L   F  +G++ EV ++ D+ ++RS+G+ F+ +   + A  A+  
Sbjct:     7 KLLVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66

Query:   247 MNGKIINGWMIVVDVA-KTTPKYSRG 271
             MNGK ++G  I VD A K++   SRG
Sbjct:    67 MNGKSVDGRQIRVDQAGKSSENRSRG 92


>UNIPROTKB|H9L0U4 [details] [associations]
            symbol:CIRBP "Uncharacterized protein" species:9031 "Gallus
            gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
            "nucleic acid binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            GeneTree:ENSGT00700000104309 EMBL:AADN02030141 EMBL:AADN02030142
            Ensembl:ENSGALT00000029134 Uniprot:H9L0U4
        Length = 167

 Score = 161 (61.7 bits), Expect = 1.1e-11, P = 1.1e-11
 Identities = 34/86 (39%), Positives = 55/86 (63%)

Query:   187 KLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKE 246
             KL V GLSF T+E++L   F  +G++ EV ++ D+ ++RS+G+ F+ +   + A  A+  
Sbjct:     7 KLLVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66

Query:   247 MNGKIINGWMIVVDVA-KTTPKYSRG 271
             MNGK ++G  I VD A K++   SRG
Sbjct:    67 MNGKSVDGRQIRVDQAGKSSENRSRG 92


>UNIPROTKB|H9L3B3 [details] [associations]
            symbol:CIRBP "Uncharacterized protein" species:9031 "Gallus
            gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
            "nucleic acid binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            GeneTree:ENSGT00700000104309 EMBL:AADN02030141 EMBL:AADN02030142
            Ensembl:ENSGALT00000036191 Uniprot:H9L3B3
        Length = 172

 Score = 161 (61.7 bits), Expect = 1.1e-11, P = 1.1e-11
 Identities = 34/86 (39%), Positives = 55/86 (63%)

Query:   187 KLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKE 246
             KL V GLSF T+E++L   F  +G++ EV ++ D+ ++RS+G+ F+ +   + A  A+  
Sbjct:     7 KLLVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66

Query:   247 MNGKIINGWMIVVDVA-KTTPKYSRG 271
             MNGK ++G  I VD A K++   SRG
Sbjct:    67 MNGKSVDGRQIRVDQAGKSSENRSRG 92


>UNIPROTKB|I3LQ36 [details] [associations]
            symbol:I3LQ36 "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            GeneTree:ENSGT00700000104309 EMBL:CU210877
            Ensembl:ENSSSCT00000005974 Uniprot:I3LQ36
        Length = 161

 Score = 161 (61.7 bits), Expect = 1.1e-11, P = 1.1e-11
 Identities = 35/85 (41%), Positives = 53/85 (62%)

Query:   187 KLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKE 246
             KLFV GL+F T E+ L   F  FG + EV ++ D  ++RS+G+ FI +T  E AS A++ 
Sbjct:     7 KLFVGGLNFNTYEQALEDHFSSFGPIFEVVVVKDWETRRSQGFGFITFTNPEHASNAMRA 66

Query:   247 MNGKIINGWMIVVDVAKTTPKYSRG 271
              NG+ ++G  I VD A  + + +RG
Sbjct:    67 TNGESLDGRQIHVDHAGKSARGTRG 91


>TAIR|locus:2079276 [details] [associations]
            symbol:ATRZ-1A species:3702 "Arabidopsis thaliana"
            [GO:0000166 "nucleotide binding" evidence=IEA;IDA] [GO:0003676
            "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA binding"
            evidence=ISS] [GO:0008270 "zinc ion binding" evidence=IEA]
            [GO:0009409 "response to cold" evidence=IMP] [GO:0009631 "cold
            acclimation" evidence=IGI] [GO:0005634 "nucleus" evidence=IDA]
            [GO:0005737 "cytoplasm" evidence=IDA] [GO:0005829 "cytosol"
            evidence=IDA] InterPro:IPR000504 InterPro:IPR001878
            InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102
            PROSITE:PS50158 SMART:SM00343 SMART:SM00360 GO:GO:0005829
            GO:GO:0005634 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0000166
            GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0009631
            GO:GO:0003676 Gene3D:4.10.60.10 EMBL:AP001298 HOGENOM:HOG000276232
            UniGene:At.48707 HSSP:Q61474 KO:K12885 EMBL:AY054613 EMBL:AF424613
            EMBL:AY072457 EMBL:AK221725 EMBL:AK227088 IPI:IPI00530350
            RefSeq:NP_189273.1 ProteinModelPortal:Q9LIN3 SMR:Q9LIN3
            IntAct:Q9LIN3 STRING:Q9LIN3 PRIDE:Q9LIN3 EnsemblPlants:AT3G26420.1
            GeneID:822246 KEGG:ath:AT3G26420 TAIR:At3g26420 InParanoid:Q9LIN3
            OMA:SSKDDRY PhylomeDB:Q9LIN3 ProtClustDB:CLSN2723027
            Genevestigator:Q9LIN3 Uniprot:Q9LIN3
        Length = 245

 Score = 170 (64.9 bits), Expect = 1.3e-11, P = 1.3e-11
 Identities = 33/77 (42%), Positives = 52/77 (67%)

Query:   187 KLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKE 246
             + F+ GL++ TS++ LR AFE +G LVE K+++DK S RS+G+ FI +  ++A   A+  
Sbjct:     8 RCFIGGLAWTTSDRGLRDAFEKYGHLVEAKVVLDKFSGRSRGFGFITFDEKKAMDEAIAA 67

Query:   247 MNGKIINGWMIVVDVAK 263
             MNG  ++G  I VD A+
Sbjct:    68 MNGMDLDGRTITVDKAQ 84


>UNIPROTKB|O93235 [details] [associations]
            symbol:cirbp-a "Cold-inducible RNA-binding protein A"
            species:8355 "Xenopus laevis" [GO:0003729 "mRNA binding"
            evidence=IDA] [GO:0003730 "mRNA 3'-UTR binding" evidence=ISS]
            [GO:0005634 "nucleus" evidence=ISS] [GO:0005737 "cytoplasm"
            evidence=ISS] [GO:0007369 "gastrulation" evidence=IMP] [GO:0009409
            "response to cold" evidence=IEP] [GO:0009411 "response to UV"
            evidence=ISS] [GO:0009790 "embryo development" evidence=IMP]
            [GO:0010494 "cytoplasmic stress granule" evidence=ISS] [GO:0016477
            "cell migration" evidence=IMP] [GO:0017148 "negative regulation of
            translation" evidence=ISS] [GO:0019899 "enzyme binding"
            evidence=ISS] [GO:0022008 "neurogenesis" evidence=IMP] [GO:0030371
            "translation repressor activity" evidence=ISS] [GO:0034063 "stress
            granule assembly" evidence=ISS] [GO:0045727 "positive regulation of
            translation" evidence=ISS] [GO:0048255 "mRNA stabilization"
            evidence=ISS] [GO:0048793 "pronephros development"
            evidence=IEP;IMP] [GO:0060212 "negative regulation of
            nuclear-transcribed mRNA poly(A) tail shortening" evidence=ISS]
            [GO:0070181 "SSU rRNA binding" evidence=ISS] [GO:0072004 "kidney
            field specification" evidence=IMP] [GO:0005840 "ribosome"
            evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0009411
            GO:GO:0005654 GO:GO:0016477 GO:GO:0022008 GO:GO:0000166
            GO:GO:0030371 GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0019899
            GO:GO:0048255 GO:GO:0003730 GO:GO:0045727 GO:GO:0007369
            GO:GO:0010494 GO:GO:0034063 GO:GO:0048793 EMBL:AB007597
            EMBL:AF278702 EMBL:BC041204 RefSeq:NP_001080069.1 UniGene:Xl.4515
            ProteinModelPortal:O93235 SMR:O93235 GeneID:379761 KEGG:xla:379761
            CTD:379761 Xenbase:XB-GENE-6256647 HOVERGEN:HBG107480 GO:GO:0070181
            GO:GO:0072004 GO:GO:0060212 Uniprot:O93235
        Length = 166

 Score = 159 (61.0 bits), Expect = 1.8e-11, P = 1.8e-11
 Identities = 33/85 (38%), Positives = 51/85 (60%)

Query:   187 KLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKE 246
             KLF+ GL+F T+E  L  AF  +G + EV ++ D+ +KRS+G+ F+ +   + A  A+  
Sbjct:     6 KLFIGGLNFETNEDCLEQAFTKYGRISEVVVVKDRETKRSRGFGFVTFENVDDAKDAMMA 65

Query:   247 MNGKIINGWMIVVDVAKTTPKYSRG 271
             MNGK ++G  I VD A  +    RG
Sbjct:    66 MNGKSVDGRQIRVDQAGKSSGERRG 90


>TAIR|locus:2136298 [details] [associations]
            symbol:CCR1 "cold, circadian rhythm, and RNA binding 1"
            species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
            binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0005634
            "nucleus" evidence=ISM] [GO:0009507 "chloroplast" evidence=IDA]
            [GO:0005730 "nucleolus" evidence=IDA] [GO:0009409 "response to
            cold" evidence=IEP] [GO:0005618 "cell wall" evidence=IDA]
            [GO:0045087 "innate immune response" evidence=IDA] [GO:0005886
            "plasma membrane" evidence=IDA] [GO:0009651 "response to salt
            stress" evidence=IEP] [GO:0005777 "peroxisome" evidence=IDA]
            [GO:0010043 "response to zinc ion" evidence=IEP] [GO:0009737
            "response to abscisic acid stimulus" evidence=IDA] [GO:0005829
            "cytosol" evidence=RCA] [GO:0009506 "plasmodesma" evidence=IDA]
            [GO:0048046 "apoplast" evidence=IDA] [GO:0005794 "Golgi apparatus"
            evidence=IDA] [GO:0007623 "circadian rhythm" evidence=RCA]
            [GO:0000380 "alternative mRNA splicing, via spliceosome"
            evidence=IMP] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 GO:GO:0005886 GO:GO:0009506
            GO:GO:0009737 GO:GO:0005794 GO:GO:0005618 GO:GO:0009507
            EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0005730 GO:GO:0005777
            GO:GO:0000166 GO:GO:0010043 GO:GO:0048046 GO:GO:0009651
            GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0045087 GO:GO:0003723
            EMBL:AL161594 eggNOG:COG0724 EMBL:AL050351 GO:GO:0000380
            HOGENOM:HOG000276232 UniGene:At.23968 ProtClustDB:CLSN2913158
            EMBL:Z14988 EMBL:L00649 EMBL:L04171 EMBL:AY034997 EMBL:AY063005
            IPI:IPI00520057 IPI:IPI00526742 PIR:S30148 RefSeq:NP_195637.1
            ProteinModelPortal:Q03251 SMR:Q03251 MINT:MINT-1163792
            STRING:Q03251 PaxDb:Q03251 PRIDE:Q03251 ProMEX:Q03251
            EnsemblPlants:AT4G39260.1 GeneID:830082 KEGG:ath:AT4G39260
            TAIR:At4g39260 InParanoid:Q03251 OMA:GNNSGGY Genevestigator:Q03251
            Uniprot:Q03251
        Length = 169

 Score = 157 (60.3 bits), Expect = 3.1e-11, P = 3.1e-11
 Identities = 30/78 (38%), Positives = 55/78 (70%)

Query:   187 KLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKE 246
             + FV GL++ T+++ L+  F  FG++++ KII D+ S RS+G+ F+ +  E+A   A++E
Sbjct:     7 RCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEE 66

Query:   247 MNGKIINGWMIVVDVAKT 264
             MNGK ++G +I V+ A++
Sbjct:    67 MNGKELDGRVITVNEAQS 84


>UNIPROTKB|K7GNR2 [details] [associations]
            symbol:RBMX "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            Gene3D:3.30.70.330 GeneTree:ENSGT00700000104336 EMBL:FP102148
            Ensembl:ENSSSCT00000034855 Uniprot:K7GNR2
        Length = 129

 Score = 156 (60.0 bits), Expect = 4.0e-11, P = 4.0e-11
 Identities = 32/82 (39%), Positives = 53/82 (64%)

Query:   187 KLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKE 246
             KLF+ GL+  T+EK L A F  +G +VEV ++ D+ + +S+G+AF+ + +   A  A ++
Sbjct:     9 KLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARD 68

Query:   247 MNGKIINGWMIVVDVAKTTPKY 268
             MNGK ++G  I V+ A T P +
Sbjct:    69 MNGKSLDGKAIKVEQA-TKPSF 89


>UNIPROTKB|K7ENX8 [details] [associations]
            symbol:CIRBP "Cold-inducible RNA-binding protein"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
            HGNC:HGNC:1982 Ensembl:ENST00000589266 Uniprot:K7ENX8
        Length = 89

 Score = 155 (59.6 bits), Expect = 5.2e-11, P = 5.2e-11
 Identities = 30/74 (40%), Positives = 49/74 (66%)

Query:   187 KLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKE 246
             KLFV GLSF T+E++L   F  +G++ EV ++ D+ ++RS+G+ F+ +   + A  A+  
Sbjct:     7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66

Query:   247 MNGKIINGWMIVVD 260
             MNGK ++G  I VD
Sbjct:    67 MNGKSVDGRQIRVD 80


>ZFIN|ZDB-GENE-030131-5841 [details] [associations]
            symbol:cirbp "cold inducible RNA binding protein"
            species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0005575 "cellular_component" evidence=ND] [GO:0009409 "response
            to cold" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            ZFIN:ZDB-GENE-030131-5841 GO:GO:0000166 GO:GO:0009409
            Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00700000104309
            EMBL:BX649404 IPI:IPI00758644 PRIDE:F1R6L3
            Ensembl:ENSDART00000105405 ArrayExpress:F1R6L3 Bgee:F1R6L3
            Uniprot:F1R6L3
        Length = 224

 Score = 161 (61.7 bits), Expect = 5.3e-11, P = 5.3e-11
 Identities = 32/76 (42%), Positives = 50/76 (65%)

Query:   187 KLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKE 246
             KLF+ GLS+ T+E++L  AF  +G + +V +I D+ + RS+G+ F+ +   E A  A+  
Sbjct:    24 KLFIGGLSYDTTEQSLEEAFSKYGTIAKVDVIRDRETDRSRGFGFVTFENPEDAKDAMAA 83

Query:   247 MNGKIINGWMIVVDVA 262
             MNGK ++G MI VD A
Sbjct:    84 MNGKQVDGRMIRVDEA 99


>TAIR|locus:2077427 [details] [associations]
            symbol:AT3G08000 species:3702 "Arabidopsis thaliana"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
            acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
            [GO:0005634 "nucleus" evidence=ISM] [GO:0008150
            "biological_process" evidence=ND] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC013483 eggNOG:COG0724
            HOGENOM:HOG000276232 HSSP:Q14103 UniGene:At.40270 UniGene:At.28103
            EMBL:BT012118 EMBL:BT012373 IPI:IPI00520412 RefSeq:NP_187457.1
            ProteinModelPortal:Q9SFB4 SMR:Q9SFB4 EnsemblPlants:AT3G08000.1
            GeneID:819991 KEGG:ath:AT3G08000 TAIR:At3g08000 InParanoid:Q9SFB4
            OMA:FCTSSSA PhylomeDB:Q9SFB4 ProtClustDB:CLSN2915579
            Genevestigator:Q9SFB4 Uniprot:Q9SFB4
        Length = 143

 Score = 154 (59.3 bits), Expect = 6.9e-11, P = 6.9e-11
 Identities = 35/80 (43%), Positives = 51/80 (63%)

Query:   175 SSEASPTQIKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEY 234
             SS ASP+     KLF+ GLS+   E++L+ AF  FGE+ EV+I  DK S RS+G+ F+++
Sbjct:    34 SSSASPSS----KLFIGGLSWSVDEQSLKDAFSSFGEVAEVRIAYDKGSGRSRGFGFVDF 89

Query:   235 TTEEAASAALKEMNGKIING 254
               E  A +A   M+GK + G
Sbjct:    90 AEEGDALSAKDAMDGKGLLG 109


>UNIPROTKB|Q96E39 [details] [associations]
            symbol:RBMXL1 "RNA binding motif protein, X-linked-like-1"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0006397
            "mRNA processing" evidence=IEA] [GO:0008380 "RNA splicing"
            evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0005634 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
            Gene3D:3.30.70.330 GO:GO:0003723 EMBL:CH471097 GO:GO:0030529
            eggNOG:COG0724 EMBL:AL139416 HSSP:Q14103 UniGene:Hs.481898
            HOGENOM:HOG000276235 HOVERGEN:HBG063314 InterPro:IPR012604
            Pfam:PF08081 KO:K12885 EMBL:AL832554 EMBL:BC012942 IPI:IPI00061178
            RefSeq:NP_001156008.1 RefSeq:NP_062556.2 ProteinModelPortal:Q96E39
            SMR:Q96E39 IntAct:Q96E39 STRING:Q96E39 PhosphoSite:Q96E39
            PaxDb:Q96E39 PRIDE:Q96E39 Ensembl:ENST00000321792
            Ensembl:ENST00000399794 GeneID:494115 KEGG:hsa:494115
            UCSC:uc001dms.3 CTD:494115 GeneCards:GC01M089446 HGNC:HGNC:25073
            neXtProt:NX_Q96E39 PharmGKB:PA165752300 OMA:STIYVEN
            PhylomeDB:Q96E39 GenomeRNAi:494115 NextBio:255993
            ArrayExpress:Q96E39 Bgee:Q96E39 Uniprot:Q96E39
        Length = 390

 Score = 171 (65.3 bits), Expect = 1.1e-10, P = 1.1e-10
 Identities = 35/86 (40%), Positives = 55/86 (63%)

Query:   187 KLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKE 246
             KLF+ GL+  T+EK L   F  +G +VEV +I D+ + +S+G+AF+ + +   A  A ++
Sbjct:     9 KLFIGGLNTETNEKALETVFGKYGRIVEVLLIKDRETNKSRGFAFVTFESPADAKDAARD 68

Query:   247 MNGKIINGWMIVVDVAKTTPKYSRGR 272
             MNGK ++G  I V+ A T P + RGR
Sbjct:    69 MNGKSLDGKAIKVEQA-TKPSFERGR 93


>ASPGD|ASPL0000040642 [details] [associations]
            symbol:AN2989 species:162425 "Emericella nidulans"
            [GO:0008150 "biological_process" evidence=ND] [GO:0003676 "nucleic
            acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0005622 "intracellular" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 EMBL:BN001306
            GO:GO:0003676 HOGENOM:HOG000276232 OMA:ISEMDGK
            ProteinModelPortal:C8VIY5 EnsemblFungi:CADANIAT00010091
            Uniprot:C8VIY5
        Length = 128

 Score = 152 (58.6 bits), Expect = 1.2e-10, P = 1.2e-10
 Identities = 29/85 (34%), Positives = 50/85 (58%)

Query:   187 KLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKE 246
             KLF+ GL+++T++  LR  F  +G + E  ++ D+ + RS+G+ F+ + +E  A AA+  
Sbjct:     3 KLFIGGLAWHTTDDVLREGFSRYGTIEEAVVVKDRDTNRSRGFGFVRFASEPEADAAMGA 62

Query:   247 MNGKIINGWMIVVDVAKTTPKYSRG 271
             MN +  +G +I VD A   P    G
Sbjct:    63 MNNQEFDGRIIRVDKASERPAARNG 87


>TAIR|locus:2159401 [details] [associations]
            symbol:GR-RBP3 "glycine-rich RNA-binding protein 3"
            species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
            binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0005739
            "mitochondrion" evidence=IDA] [GO:0009409 "response to cold"
            evidence=IEP] [GO:0005524 "ATP binding" evidence=IDA] [GO:0005507
            "copper ion binding" evidence=IDA] [GO:0006626 "protein targeting
            to mitochondrion" evidence=RCA] [GO:0009220 "pyrimidine
            ribonucleotide biosynthetic process" evidence=RCA] [GO:0009909
            "regulation of flower development" evidence=RCA] [GO:0010228
            "vegetative to reproductive phase transition of meristem"
            evidence=RCA] [GO:0034968 "histone lysine methylation"
            evidence=RCA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 GO:GO:0005739 GO:GO:0005524
            EMBL:CP002688 GenomeReviews:BA000015_GR Gene3D:3.30.70.330
            GO:GO:0003676 GO:GO:0005507 EMBL:AB006696 eggNOG:COG0724
            HSSP:Q14103 KO:K12741 EMBL:AY060565 EMBL:AY125548 EMBL:AB493804
            IPI:IPI00542729 RefSeq:NP_200911.1 UniGene:At.24064
            ProteinModelPortal:Q9FNR1 SMR:Q9FNR1 STRING:Q9FNR1 PaxDb:Q9FNR1
            PRIDE:Q9FNR1 EnsemblPlants:AT5G61030.1 GeneID:836224
            KEGG:ath:AT5G61030 GeneFarm:3953 TAIR:At5g61030
            HOGENOM:HOG000029199 InParanoid:Q9FNR1 OMA:YANDRTS
            ProtClustDB:CLSN2916423 Genevestigator:Q9FNR1 Uniprot:Q9FNR1
        Length = 309

 Score = 168 (64.2 bits), Expect = 1.3e-10, P = 1.3e-10
 Identities = 28/80 (35%), Positives = 59/80 (73%)

Query:   183 IKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASA 242
             + + KLF+ G+++   E +LR AF  +GE+V+ ++I+D+ + RS+G+ F+ +T+ EAAS+
Sbjct:    37 MSSSKLFIGGMAYSMDEDSLREAFTKYGEVVDTRVILDRETGRSRGFGFVTFTSSEAASS 96

Query:   243 ALKEMNGKIINGWMIVVDVA 262
             A++ ++G+ ++G ++ V+ A
Sbjct:    97 AIQALDGRDLHGRVVKVNYA 116


>UNIPROTKB|D6W5Y5 [details] [associations]
            symbol:CIRBP "Cold-inducible RNA-binding protein"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            EMBL:CH471139 EMBL:AC004221 EMBL:AC004258 IPI:IPI00641579
            UniGene:Hs.618145 UniGene:Hs.634522 HGNC:HGNC:1982
            HOGENOM:HOG000276232 ChiTaRS:CIRBP ProteinModelPortal:D6W5Y5
            PRIDE:D6W5Y5 Ensembl:ENST00000587323 Ensembl:ENST00000587896
            Ensembl:ENST00000588230 Ensembl:ENST00000589710 ArrayExpress:D6W5Y5
            Bgee:D6W5Y5 Uniprot:D6W5Y5
        Length = 297

 Score = 167 (63.8 bits), Expect = 1.5e-10, P = 1.5e-10
 Identities = 35/86 (40%), Positives = 56/86 (65%)

Query:   187 KLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKE 246
             KLFV GLSF T+E++L   F  +G++ EV ++ D+ ++RS+G+ F+ +   + A  A+  
Sbjct:     7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66

Query:   247 MNGKIINGWMIVVDVA-KTTPKYSRG 271
             MNGK ++G  I VD A K++   SRG
Sbjct:    67 MNGKSVDGRQIRVDQAGKSSDNRSRG 92


>TAIR|locus:2179624 [details] [associations]
            symbol:AT5G19030 species:3702 "Arabidopsis thaliana"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
            acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
            [GO:0005739 "mitochondrion" evidence=ISM] [GO:0008150
            "biological_process" evidence=ND] [GO:0009507 "chloroplast"
            evidence=ISM] [GO:0000398 "mRNA splicing, via spliceosome"
            evidence=RCA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 EMBL:CP002688 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00544212 RefSeq:NP_197404.2
            UniGene:At.31343 ProteinModelPortal:F4JZK9 SMR:F4JZK9
            EnsemblPlants:AT5G19030.1 GeneID:832022 KEGG:ath:AT5G19030
            OMA:RTISCVA PhylomeDB:F4JZK9 Uniprot:F4JZK9
        Length = 172

 Score = 151 (58.2 bits), Expect = 1.5e-10, P = 1.5e-10
 Identities = 35/99 (35%), Positives = 56/99 (56%)

Query:   174 DSSEASPTQIKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIE 233
             ++ EAS        LFV G S   SE  L+  F  FG++  VKII ++ +++S GY ++ 
Sbjct:    65 ETREASSLPSSISSLFVKGFSDSVSEGRLKKVFSEFGQVTNVKIIANERTRQSLGYGYVW 124

Query:   234 YTTEEAASAALKEMNGKIINGWMIVVDVAKTTPKYSRGR 272
             + ++E A +A++ MNGK  +G  I+V   +  P  SR R
Sbjct:   125 FNSKEDAQSAVEAMNGKFFDGRFILVKFGQ--PGLSRRR 161


>UNIPROTKB|H0Y6E7 [details] [associations]
            symbol:RBMX "RNA-binding motif protein, X chromosome,
            N-terminally processed" species:9606 "Homo sapiens" [GO:0000166
            "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
            binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL683813 InterPro:IPR012604
            Pfam:PF08081 HGNC:HGNC:9910 ChiTaRS:RBMX Ensembl:ENST00000419968
            Uniprot:H0Y6E7
        Length = 292

 Score = 166 (63.5 bits), Expect = 1.8e-10, P = 1.8e-10
 Identities = 34/86 (39%), Positives = 55/86 (63%)

Query:   187 KLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKE 246
             KLF+ GL+  T+EK L A F  +G +VEV ++ D+ + +S+G+AF+ + +   A  A ++
Sbjct:    11 KLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARD 70

Query:   247 MNGKIINGWMIVVDVAKTTPKYSRGR 272
             MNGK ++G  I V+ A T P +  GR
Sbjct:    71 MNGKSLDGKAIKVEQA-TKPSFESGR 95


>UNIPROTKB|H3BT71 [details] [associations]
            symbol:RBMX "RNA-binding motif protein, X chromosome,
            N-terminally processed" species:9606 "Homo sapiens" [GO:0000166
            "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
            binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL683813 InterPro:IPR012604
            Pfam:PF08081 HGNC:HGNC:9910 ChiTaRS:RBMX ProteinModelPortal:H3BT71
            SMR:H3BT71 Ensembl:ENST00000562646 Bgee:H3BT71 Uniprot:H3BT71
        Length = 296

 Score = 166 (63.5 bits), Expect = 1.9e-10, P = 1.9e-10
 Identities = 34/86 (39%), Positives = 55/86 (63%)

Query:   187 KLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKE 246
             KLF+ GL+  T+EK L A F  +G +VEV ++ D+ + +S+G+AF+ + +   A  A ++
Sbjct:     9 KLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARD 68

Query:   247 MNGKIINGWMIVVDVAKTTPKYSRGR 272
             MNGK ++G  I V+ A T P +  GR
Sbjct:    69 MNGKSLDGKAIKVEQA-TKPSFESGR 93


>UNIPROTKB|J3KQA8 [details] [associations]
            symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            EMBL:AC078778 HGNC:HGNC:5031 ChiTaRS:HNRNPA1
            ProteinModelPortal:J3KQA8 Ensembl:ENST00000420780 Uniprot:J3KQA8
        Length = 102

 Score = 150 (57.9 bits), Expect = 2.0e-10, P = 2.0e-10
 Identities = 33/93 (35%), Positives = 59/93 (63%)

Query:   170 MVPSDSSEASPTQIKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGY 229
             M  S+S +  P Q++  KLF+ GLSF T++++LR+ FE +G L +  ++ D  +KRS+G+
Sbjct:     1 MSKSESPK-EPEQLR--KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGF 57

Query:   230 AFIEYTTEEAASAALK----EMNGKIINGWMIV 258
              F+ Y T E   AA+     +++G+++   MI+
Sbjct:    58 GFVTYATVEEVDAAMNARPHKVDGRVVEATMIL 90


>UNIPROTKB|Q83CD7 [details] [associations]
            symbol:CBU_1183 "Glycine-rich RNA-binding protein"
            species:227377 "Coxiella burnetii RSA 493" [GO:0008150
            "biological_process" evidence=ND] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AE016828
            GenomeReviews:AE016828_GR HOGENOM:HOG000276232 OMA:KRVHIPT
            RefSeq:NP_820178.2 ProteinModelPortal:Q83CD7 PRIDE:Q83CD7
            GeneID:1209086 KEGG:cbu:CBU_1183 PATRIC:17931107
            ProtClustDB:CLSK914597 BioCyc:CBUR227377:GJ7S-1169-MONOMER
            Uniprot:Q83CD7
        Length = 117

 Score = 150 (57.9 bits), Expect = 2.0e-10, P = 2.0e-10
 Identities = 31/77 (40%), Positives = 51/77 (66%)

Query:   187 KLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKE 246
             K++V  LS+  +   L++ F  +GE+ E K+IMD+ + RSKG+AFI Y T++AA  A+ +
Sbjct:    19 KIYVGSLSYDVTADELQSFFGQYGEIEEAKLIMDRETGRSKGFAFITYGTQDAAQEAVSK 78

Query:   247 MNGKIINGWMIVVDVAK 263
              NG  + G  I V++A+
Sbjct:    79 ANGIDLQGRKIRVNIAR 95


>TIGR_CMR|CBU_1183 [details] [associations]
            symbol:CBU_1183 "nucleic acid binding domain protein"
            species:227377 "Coxiella burnetii RSA 493" [GO:0008150
            "biological_process" evidence=ND] [GO:0003676 "nucleic acid
            binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AE016828
            GenomeReviews:AE016828_GR HOGENOM:HOG000276232 OMA:KRVHIPT
            RefSeq:NP_820178.2 ProteinModelPortal:Q83CD7 PRIDE:Q83CD7
            GeneID:1209086 KEGG:cbu:CBU_1183 PATRIC:17931107
            ProtClustDB:CLSK914597 BioCyc:CBUR227377:GJ7S-1169-MONOMER
            Uniprot:Q83CD7
        Length = 117

 Score = 150 (57.9 bits), Expect = 2.0e-10, P = 2.0e-10
 Identities = 31/77 (40%), Positives = 51/77 (66%)

Query:   187 KLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKE 246
             K++V  LS+  +   L++ F  +GE+ E K+IMD+ + RSKG+AFI Y T++AA  A+ +
Sbjct:    19 KIYVGSLSYDVTADELQSFFGQYGEIEEAKLIMDRETGRSKGFAFITYGTQDAAQEAVSK 78

Query:   247 MNGKIINGWMIVVDVAK 263
              NG  + G  I V++A+
Sbjct:    79 ANGIDLQGRKIRVNIAR 95


>TAIR|locus:2168133 [details] [associations]
            symbol:AT5G59860 species:3702 "Arabidopsis thaliana"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
            acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
            [GO:0005575 "cellular_component" evidence=ND] [GO:0008150
            "biological_process" evidence=ND] [GO:0000398 "mRNA splicing, via
            spliceosome" evidence=RCA] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:CP002688
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00539298
            RefSeq:NP_200794.1 UniGene:At.66722 ProteinModelPortal:F4JXD2
            SMR:F4JXD2 EnsemblPlants:AT5G59860.1 GeneID:836108
            KEGG:ath:AT5G59860 Uniprot:F4JXD2
        Length = 157

 Score = 150 (57.9 bits), Expect = 2.0e-10, P = 2.0e-10
 Identities = 41/121 (33%), Positives = 66/121 (54%)

Query:   149 QPDENFGSENKDYGGNNLQNSMV---PSDSSEASPTQIKTKKLFV---TGLSFYTSEKTL 202
             QP +N G+++++   N      +   P  S       I  K L     +GLS YT++++L
Sbjct:    28 QPHKNSGAKDEEAKFNKRTKYKMRIRPRSSISKRRRLIGGKTLTCVSNSGLSAYTTDQSL 87

Query:   203 RAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVDVA 262
             R  F  F  L++     D+ ++R KG+ FI + +E+ A  ALK +NGKI+NG +I V+ A
Sbjct:    88 RQLFAPFARLIK-----DQQTQRPKGFGFITFESEDDAQKALKALNGKIVNGRLIFVETA 142

Query:   263 K 263
             K
Sbjct:   143 K 143


>UNIPROTKB|K7GRX3 [details] [associations]
            symbol:RBMX "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            Gene3D:3.30.70.330 GeneTree:ENSGT00700000104336 InterPro:IPR012604
            Pfam:PF08081 EMBL:FP102148 Ensembl:ENSSSCT00000035747
            Uniprot:K7GRX3
        Length = 306

 Score = 166 (63.5 bits), Expect = 2.2e-10, P = 2.2e-10
 Identities = 34/86 (39%), Positives = 55/86 (63%)

Query:   187 KLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKE 246
             KLF+ GL+  T+EK L A F  +G +VEV ++ D+ + +S+G+AF+ + +   A  A ++
Sbjct:     9 KLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARD 68

Query:   247 MNGKIINGWMIVVDVAKTTPKYSRGR 272
             MNGK ++G  I V+ A T P +  GR
Sbjct:    69 MNGKSLDGKAIKVEQA-TKPSFESGR 93


>UNIPROTKB|Q2R8U1 [details] [associations]
            symbol:Os11g0216400 "Os11g0216400 protein" species:39947
            "Oryza sativa Japonica Group" [GO:0004252 "serine-type
            endopeptidase activity" evidence=ISS] EMBL:DP000010 EMBL:AP008217
            GO:GO:0004252 eggNOG:NOG12793 EMBL:CM000148 RefSeq:NP_001067510.1
            UniGene:Os.39944 STRING:Q2R8U1 EnsemblPlants:LOC_Os11g11020.1
            GeneID:4350082 KEGG:osa:4350082 OMA:LITMEFP ProtClustDB:CLSN2698490
            Uniprot:Q2R8U1
        Length = 374

 Score = 166 (63.5 bits), Expect = 4.0e-10, P = 4.0e-10
 Identities = 33/105 (31%), Positives = 60/105 (57%)

Query:    67 LLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIYHVSWQSNFG 126
             +LF      HWL+ M+ P     T+ +M++ Y Q L KV+G+ ++A+  +Y  S  +  G
Sbjct:    84 ILFEGCDYNHWLITMEFPDPKP-TREEMIETYLQTLAKVVGSYEEAKKRMYAFSTTTYVG 142

Query:   127 FCCELDDECAQELTGVPGVLSVQPDENFGSENKDYGGNNLQNSMV 171
             F   + +E +++  G+PGV+ + PD     E K+YGG+  +N ++
Sbjct:   143 FQAVMTEEMSEKFRGLPGVVFILPDSYLYPETKEYGGDKYENGVI 187


>ZFIN|ZDB-GENE-050417-329 [details] [associations]
            symbol:zgc:112425 "zgc:112425" species:7955 "Danio
            rerio" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
            "nucleic acid binding" evidence=IEA] [GO:0005575
            "cellular_component" evidence=ND] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            ZFIN:ZDB-GENE-050417-329 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003676 eggNOG:COG0724 HOVERGEN:HBG107480 KO:K13195
            HOGENOM:HOG000276232 OrthoDB:EOG4HHP40 GeneTree:ENSGT00700000104309
            OMA:GNNSGGY EMBL:CABZ01088879 EMBL:CABZ01088880 EMBL:BC093299
            EMBL:BC095030 IPI:IPI00570286 RefSeq:NP_001017797.1
            UniGene:Dr.75965 SMR:Q566W6 STRING:Q566W6
            Ensembl:ENSDART00000093068 Ensembl:ENSDART00000113350 GeneID:550495
            KEGG:dre:550495 NextBio:20879737 Uniprot:Q566W6
        Length = 185

 Score = 147 (56.8 bits), Expect = 4.3e-10, P = 4.3e-10
 Identities = 30/76 (39%), Positives = 48/76 (63%)

Query:   187 KLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKE 246
             KLF+ GLSF T+E++L  AF  +G +  V +  ++ + RS+G+ F+ +   + A  AL+ 
Sbjct:     6 KLFIGGLSFDTTEQSLEDAFSKYGVITNVHVARNRETNRSRGFGFVTFENPDDAKDALEG 65

Query:   247 MNGKIINGWMIVVDVA 262
             MNGK ++G  I VD A
Sbjct:    66 MNGKSVDGRTIRVDEA 81


>UNIPROTKB|F1RQ90 [details] [associations]
            symbol:RBMX "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0071347 "cellular response to interleukin-1"
            evidence=IEA] [GO:0071013 "catalytic step 2 spliceosome"
            evidence=IEA] [GO:0070062 "extracellular vesicular exosome"
            evidence=IEA] [GO:0045944 "positive regulation of transcription
            from RNA polymerase II promoter" evidence=IEA] [GO:0044530
            "supraspliceosomal complex" evidence=IEA] [GO:0006509 "membrane
            protein ectodomain proteolysis" evidence=IEA] [GO:0006366
            "transcription from RNA polymerase II promoter" evidence=IEA]
            [GO:0005719 "nuclear euchromatin" evidence=IEA] [GO:0003729 "mRNA
            binding" evidence=IEA] [GO:0003682 "chromatin binding"
            evidence=IEA] [GO:0001047 "core promoter binding" evidence=IEA]
            [GO:0000381 "regulation of alternative mRNA splicing, via
            spliceosome" evidence=IEA] [GO:0000166 "nucleotide binding"
            evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 GO:GO:0070062
            GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0006366 GO:GO:0006509
            GO:GO:0005719 GO:GO:0071347 GO:GO:0071013 GO:GO:0000381
            GeneTree:ENSGT00700000104336 InterPro:IPR012604 Pfam:PF08081
            CTD:27316 KO:K12885 OMA:PFFKGMS EMBL:FP102148 RefSeq:NP_001231025.1
            UniGene:Ssc.97220 Ensembl:ENSSSCT00000013889
            Ensembl:ENSSSCT00000034598 GeneID:100158042 KEGG:ssc:100158042
            Uniprot:F1RQ90
        Length = 390

 Score = 166 (63.5 bits), Expect = 4.5e-10, P = 4.5e-10
 Identities = 34/86 (39%), Positives = 55/86 (63%)

Query:   187 KLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKE 246
             KLF+ GL+  T+EK L A F  +G +VEV ++ D+ + +S+G+AF+ + +   A  A ++
Sbjct:     9 KLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARD 68

Query:   247 MNGKIINGWMIVVDVAKTTPKYSRGR 272
             MNGK ++G  I V+ A T P +  GR
Sbjct:    69 MNGKSLDGKAIKVEQA-TKPSFESGR 93


>RGD|1565256 [details] [associations]
            symbol:Rbmx "RNA binding motif protein, X-linked" species:10116
            "Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0000381 "regulation of alternative mRNA splicing, via
            spliceosome" evidence=ISO] [GO:0001047 "core promoter binding"
            evidence=ISO] [GO:0003682 "chromatin binding" evidence=ISO]
            [GO:0003723 "RNA binding" evidence=ISO] [GO:0003727
            "single-stranded RNA binding" evidence=IDA] [GO:0003729 "mRNA
            binding" evidence=ISO] [GO:0005515 "protein binding" evidence=IPI]
            [GO:0005634 "nucleus" evidence=ISO;IDA] [GO:0005681 "spliceosomal
            complex" evidence=IDA] [GO:0005719 "nuclear euchromatin"
            evidence=ISO] [GO:0006351 "transcription, DNA-dependent"
            evidence=IEA] [GO:0006366 "transcription from RNA polymerase II
            promoter" evidence=ISO] [GO:0006376 "mRNA splice site selection"
            evidence=IMP] [GO:0006509 "membrane protein ectodomain proteolysis"
            evidence=ISO] [GO:0044530 "supraspliceosomal complex" evidence=ISO]
            [GO:0045893 "positive regulation of transcription, DNA-dependent"
            evidence=IMP] [GO:0045944 "positive regulation of transcription
            from RNA polymerase II promoter" evidence=ISO] [GO:0070062
            "extracellular vesicular exosome" evidence=ISO] [GO:0071013
            "catalytic step 2 spliceosome" evidence=ISO] [GO:0071347 "cellular
            response to interleukin-1" evidence=ISO] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            RGD:1565256 GO:GO:0045893 GO:GO:0000166 GO:GO:0003727
            Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0005681 eggNOG:COG0724
            GO:GO:0006376 EMBL:CH474106 GeneTree:ENSGT00700000104336
            HOGENOM:HOG000276235 HOVERGEN:HBG063314 InterPro:IPR012604
            Pfam:PF08081 CTD:27316 KO:K12885 OMA:PFFKGMS OrthoDB:EOG4CNQSK
            EMBL:BC097479 IPI:IPI00370207 RefSeq:NP_001020834.1
            UniGene:Rn.229269 ProteinModelPortal:Q4V898 SMR:Q4V898
            STRING:Q4V898 PhosphoSite:Q4V898 PRIDE:Q4V898
            Ensembl:ENSRNOT00000001154 GeneID:302855 KEGG:rno:302855
            InParanoid:Q4V898 NextBio:650249 Genevestigator:Q4V898
            Uniprot:Q4V898
        Length = 390

 Score = 166 (63.5 bits), Expect = 4.5e-10, P = 4.5e-10
 Identities = 34/86 (39%), Positives = 55/86 (63%)

Query:   187 KLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKE 246
             KLF+ GL+  T+EK L A F  +G +VEV ++ D+ + +S+G+AF+ + +   A  A ++
Sbjct:     9 KLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARD 68

Query:   247 MNGKIINGWMIVVDVAKTTPKYSRGR 272
             MNGK ++G  I V+ A T P +  GR
Sbjct:    69 MNGKSLDGKAIKVEQA-TKPSFESGR 93


>UNIPROTKB|D3JUI8 [details] [associations]
            symbol:RBMX "RNA-binding motif protein, X chromosome,
            N-terminally processed" species:9913 "Bos taurus" [GO:0071347
            "cellular response to interleukin-1" evidence=IEA] [GO:0071013
            "catalytic step 2 spliceosome" evidence=IEA] [GO:0070062
            "extracellular vesicular exosome" evidence=IEA] [GO:0045944
            "positive regulation of transcription from RNA polymerase II
            promoter" evidence=IEA] [GO:0044530 "supraspliceosomal complex"
            evidence=IEA] [GO:0006509 "membrane protein ectodomain proteolysis"
            evidence=IEA] [GO:0006366 "transcription from RNA polymerase II
            promoter" evidence=IEA] [GO:0005719 "nuclear euchromatin"
            evidence=IEA] [GO:0003729 "mRNA binding" evidence=IEA] [GO:0003682
            "chromatin binding" evidence=IEA] [GO:0001047 "core promoter
            binding" evidence=IEA] [GO:0000381 "regulation of alternative mRNA
            splicing, via spliceosome" evidence=IEA] [GO:0000166 "nucleotide
            binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00700000104336
            HOGENOM:HOG000276235 InterPro:IPR012604 Pfam:PF08081 CTD:27316
            KO:K12885 OMA:PFFKGMS OrthoDB:EOG4CNQSK EMBL:DAAA02067753
            EMBL:GU304600 IPI:IPI00706784 RefSeq:NP_001165510.1 UniGene:Bt.7342
            Ensembl:ENSBTAT00000017696 GeneID:509591 KEGG:bta:509591
            NextBio:20869035 Uniprot:D3JUI8
        Length = 391

 Score = 166 (63.5 bits), Expect = 4.5e-10, P = 4.5e-10
 Identities = 34/86 (39%), Positives = 55/86 (63%)

Query:   187 KLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKE 246
             KLF+ GL+  T+EK L A F  +G +VEV ++ D+ + +S+G+AF+ + +   A  A ++
Sbjct:     9 KLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARD 68

Query:   247 MNGKIINGWMIVVDVAKTTPKYSRGR 272
             MNGK ++G  I V+ A T P +  GR
Sbjct:    69 MNGKSLDGKAIKVEQA-TKPSFESGR 93


>UNIPROTKB|P38159 [details] [associations]
            symbol:RBMX "RNA-binding motif protein, X chromosome"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=IDA;NAS]
            [GO:0071013 "catalytic step 2 spliceosome" evidence=IDA]
            [GO:0000398 "mRNA splicing, via spliceosome" evidence=IC;TAS]
            [GO:0044530 "supraspliceosomal complex" evidence=IDA] [GO:0005634
            "nucleus" evidence=IDA] [GO:0001047 "core promoter binding"
            evidence=IDA] [GO:0003682 "chromatin binding" evidence=IDA]
            [GO:0045944 "positive regulation of transcription from RNA
            polymerase II promoter" evidence=IDA] [GO:0005515 "protein binding"
            evidence=IPI] [GO:0006509 "membrane protein ectodomain proteolysis"
            evidence=IDA] [GO:0071347 "cellular response to interleukin-1"
            evidence=IDA] [GO:0070062 "extracellular vesicular exosome"
            evidence=IDA] [GO:0000381 "regulation of alternative mRNA splicing,
            via spliceosome" evidence=IDA] [GO:0003729 "mRNA binding"
            evidence=IDA] [GO:0048025 "negative regulation of mRNA splicing,
            via spliceosome" evidence=ISS] [GO:0051260 "protein
            homooligomerization" evidence=ISS] [GO:0006366 "transcription from
            RNA polymerase II promoter" evidence=IDA] [GO:0005719 "nuclear
            euchromatin" evidence=IDA] [GO:0048026 "positive regulation of mRNA
            splicing, via spliceosome" evidence=ISS] [GO:0005654 "nucleoplasm"
            evidence=TAS] [GO:0008380 "RNA splicing" evidence=TAS] [GO:0010467
            "gene expression" evidence=TAS] Reactome:REACT_71
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0005654 GO:GO:0000166 GO:GO:0070062
            GO:GO:0051260 Reactome:REACT_1675 GO:GO:0003729 Gene3D:3.30.70.330
            GO:GO:0045944 GO:GO:0003682 GO:GO:0006366 GO:GO:0006509
            GO:GO:0001047 GO:GO:0005719 GO:GO:0071347 GO:GO:0000398
            GO:GO:0071013 EMBL:AL683813 EMBL:CH471150 GO:GO:0048025
            eggNOG:COG0724 GO:GO:0048026 GO:GO:0000381 GO:GO:0044530
            HOVERGEN:HBG063314 InterPro:IPR012604 Pfam:PF08081 CTD:27316
            KO:K12885 OMA:PFFKGMS OrthoDB:EOG4CNQSK EMBL:Z23064 EMBL:AF266723
            EMBL:AF266720 EMBL:AF266721 EMBL:AF266722 EMBL:AY464692
            EMBL:AK096015 EMBL:AK304868 EMBL:BC006550 EMBL:BC007435
            IPI:IPI00304692 IPI:IPI00552938 RefSeq:NP_001158275.1
            RefSeq:NP_002130.2 UniGene:Hs.380118 UniGene:Hs.710162
            ProteinModelPortal:P38159 SMR:P38159 DIP:DIP-34447N IntAct:P38159
            MINT:MINT-5000999 STRING:P38159 PhosphoSite:P38159 DMDM:23503093
            SWISS-2DPAGE:P38159 PaxDb:P38159 PRIDE:P38159 DNASU:27316
            Ensembl:ENST00000320676 Ensembl:ENST00000431446 GeneID:27316
            KEGG:hsa:27316 UCSC:uc004fad.1 GeneCards:GC0XM135951 HGNC:HGNC:9910
            MIM:300199 neXtProt:NX_P38159 PharmGKB:PA34277 HOGENOM:HOG000070250
            InParanoid:P38159 PhylomeDB:P38159 ChiTaRS:RBMX GenomeRNAi:27316
            NextBio:50322 ArrayExpress:P38159 Bgee:P38159 CleanEx:HS_RBMX
            Genevestigator:P38159 GermOnline:ENSG00000147274 Uniprot:P38159
        Length = 391

 Score = 166 (63.5 bits), Expect = 4.5e-10, P = 4.5e-10
 Identities = 34/86 (39%), Positives = 55/86 (63%)

Query:   187 KLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKE 246
             KLF+ GL+  T+EK L A F  +G +VEV ++ D+ + +S+G+AF+ + +   A  A ++
Sbjct:     9 KLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARD 68

Query:   247 MNGKIINGWMIVVDVAKTTPKYSRGR 272
             MNGK ++G  I V+ A T P +  GR
Sbjct:    69 MNGKSLDGKAIKVEQA-TKPSFESGR 93


>UNIPROTKB|A5A6M3 [details] [associations]
            symbol:RBMX "RNA-binding motif protein, X chromosome"
            species:9598 "Pan troglodytes" [GO:0000381 "regulation of
            alternative mRNA splicing, via spliceosome" evidence=ISS]
            [GO:0001047 "core promoter binding" evidence=ISS] [GO:0003682
            "chromatin binding" evidence=ISS] [GO:0003723 "RNA binding"
            evidence=ISS] [GO:0003729 "mRNA binding" evidence=ISS] [GO:0005634
            "nucleus" evidence=ISS] [GO:0005719 "nuclear euchromatin"
            evidence=ISS] [GO:0006366 "transcription from RNA polymerase II
            promoter" evidence=ISS] [GO:0006509 "membrane protein ectodomain
            proteolysis" evidence=ISS] [GO:0044530 "supraspliceosomal complex"
            evidence=ISS] [GO:0045944 "positive regulation of transcription
            from RNA polymerase II promoter" evidence=ISS] [GO:0048025
            "negative regulation of mRNA splicing, via spliceosome"
            evidence=ISS] [GO:0048026 "positive regulation of mRNA splicing,
            via spliceosome" evidence=ISS] [GO:0051260 "protein
            homooligomerization" evidence=ISS] [GO:0070062 "extracellular
            vesicular exosome" evidence=ISS] [GO:0071013 "catalytic step 2
            spliceosome" evidence=ISS] [GO:0071347 "cellular response to
            interleukin-1" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0008380
            GO:GO:0000166 GO:GO:0070062 GO:GO:0051260 GO:GO:0003729
            GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0045944 GO:GO:0003682
            GO:GO:0006366 GO:GO:0006509 GO:GO:0001047 GO:GO:0005719
            GO:GO:0071347 GO:GO:0071013 GO:GO:0048025 eggNOG:COG0724
            GO:GO:0048026 GO:GO:0000381 GO:GO:0044530 HOGENOM:HOG000276235
            HOVERGEN:HBG063314 InterPro:IPR012604 Pfam:PF08081 CTD:27316
            KO:K12885 EMBL:AB222151 RefSeq:NP_001128678.1 UniGene:Ptr.2579
            ProteinModelPortal:A5A6M3 SMR:A5A6M3 PRIDE:A5A6M3 GeneID:738482
            KEGG:ptr:738482 NextBio:20905775 Uniprot:A5A6M3
        Length = 391

 Score = 166 (63.5 bits), Expect = 4.5e-10, P = 4.5e-10
 Identities = 34/86 (39%), Positives = 55/86 (63%)

Query:   187 KLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKE 246
             KLF+ GL+  T+EK L A F  +G +VEV ++ D+ + +S+G+AF+ + +   A  A ++
Sbjct:     9 KLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARD 68

Query:   247 MNGKIINGWMIVVDVAKTTPKYSRGR 272
             MNGK ++G  I V+ A T P +  GR
Sbjct:    69 MNGKSLDGKAIKVEQA-TKPSFESGR 93


>UNIPROTKB|Q4R7F0 [details] [associations]
            symbol:RBMX "RNA-binding motif protein, X chromosome"
            species:9541 "Macaca fascicularis" [GO:0000381 "regulation of
            alternative mRNA splicing, via spliceosome" evidence=ISS]
            [GO:0001047 "core promoter binding" evidence=ISS] [GO:0003682
            "chromatin binding" evidence=ISS] [GO:0003723 "RNA binding"
            evidence=ISS] [GO:0003729 "mRNA binding" evidence=ISS] [GO:0005634
            "nucleus" evidence=ISS] [GO:0005719 "nuclear euchromatin"
            evidence=ISS] [GO:0006366 "transcription from RNA polymerase II
            promoter" evidence=ISS] [GO:0006509 "membrane protein ectodomain
            proteolysis" evidence=ISS] [GO:0044530 "supraspliceosomal complex"
            evidence=ISS] [GO:0045944 "positive regulation of transcription
            from RNA polymerase II promoter" evidence=ISS] [GO:0048025
            "negative regulation of mRNA splicing, via spliceosome"
            evidence=ISS] [GO:0048026 "positive regulation of mRNA splicing,
            via spliceosome" evidence=ISS] [GO:0051260 "protein
            homooligomerization" evidence=ISS] [GO:0070062 "extracellular
            vesicular exosome" evidence=ISS] [GO:0071013 "catalytic step 2
            spliceosome" evidence=ISS] [GO:0071347 "cellular response to
            interleukin-1" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0008380
            GO:GO:0000166 GO:GO:0070062 GO:GO:0051260 GO:GO:0003729
            GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0045944 GO:GO:0003682
            GO:GO:0006366 GO:GO:0006509 GO:GO:0001047 GO:GO:0005719
            GO:GO:0071347 GO:GO:0071013 GO:GO:0048025 GO:GO:0048026
            GO:GO:0000381 GO:GO:0044530 HOVERGEN:HBG063314 InterPro:IPR012604
            Pfam:PF08081 EMBL:AB168869 ProteinModelPortal:Q4R7F0 SMR:Q4R7F0
            Uniprot:Q4R7F0
        Length = 391

 Score = 166 (63.5 bits), Expect = 4.5e-10, P = 4.5e-10
 Identities = 34/86 (39%), Positives = 55/86 (63%)

Query:   187 KLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKE 246
             KLF+ GL+  T+EK L A F  +G +VEV ++ D+ + +S+G+AF+ + +   A  A ++
Sbjct:     9 KLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARD 68

Query:   247 MNGKIINGWMIVVDVAKTTPKYSRGR 272
             MNGK ++G  I V+ A T P +  GR
Sbjct:    69 MNGKSLDGKAIKVEQA-TKPSFESGR 93


>MGI|MGI:1343044 [details] [associations]
            symbol:Rbmx "RNA binding motif protein, X chromosome"
            species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0000381 "regulation of alternative mRNA splicing,
            via spliceosome" evidence=ISO] [GO:0001047 "core promoter binding"
            evidence=ISO] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0003682 "chromatin binding" evidence=ISO] [GO:0003723 "RNA
            binding" evidence=ISO] [GO:0003727 "single-stranded RNA binding"
            evidence=ISO] [GO:0003729 "mRNA binding" evidence=ISO] [GO:0005634
            "nucleus" evidence=ISO] [GO:0005681 "spliceosomal complex"
            evidence=ISO] [GO:0005719 "nuclear euchromatin" evidence=ISO]
            [GO:0006351 "transcription, DNA-dependent" evidence=IEA]
            [GO:0006366 "transcription from RNA polymerase II promoter"
            evidence=ISO] [GO:0006376 "mRNA splice site selection"
            evidence=ISO] [GO:0006397 "mRNA processing" evidence=IEA]
            [GO:0006509 "membrane protein ectodomain proteolysis" evidence=ISO]
            [GO:0008380 "RNA splicing" evidence=IEA] [GO:0030529
            "ribonucleoprotein complex" evidence=IEA] [GO:0044530
            "supraspliceosomal complex" evidence=ISO] [GO:0045893 "positive
            regulation of transcription, DNA-dependent" evidence=ISO]
            [GO:0045944 "positive regulation of transcription from RNA
            polymerase II promoter" evidence=ISO] [GO:0070062 "extracellular
            vesicular exosome" evidence=ISO] [GO:0071013 "catalytic step 2
            spliceosome" evidence=ISO] [GO:0071347 "cellular response to
            interleukin-1" evidence=ISO] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 MGI:MGI:1343044
            GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
            GO:GO:0006351 GO:GO:0005681 GO:GO:0003723 eggNOG:COG0724
            EMBL:CH466583 HSSP:Q61474 GeneTree:ENSGT00700000104336
            HOGENOM:HOG000276235 HOVERGEN:HBG063314 InterPro:IPR012604
            Pfam:PF08081 CTD:27316 KO:K12885 ChiTaRS:RBMX EMBL:AJ237846
            EMBL:AJ237847 EMBL:AK087940 EMBL:AK135164 EMBL:AK165006
            EMBL:AL672106 EMBL:BC003710 IPI:IPI00124979 RefSeq:NP_001160095.1
            RefSeq:NP_035382.1 UniGene:Mm.28275 ProteinModelPortal:Q9WV02
            SMR:Q9WV02 IntAct:Q9WV02 STRING:Q9WV02 PhosphoSite:Q9WV02
            PRIDE:Q9WV02 Ensembl:ENSMUST00000114726 Ensembl:ENSMUST00000114730
            Ensembl:ENSMUST00000140384 GeneID:19655 KEGG:mmu:19655
            UCSC:uc009thi.2 InParanoid:Q9R0Y0 NextBio:296930 Bgee:Q9WV02
            Genevestigator:Q9WV02 Uniprot:Q9WV02
        Length = 391

 Score = 166 (63.5 bits), Expect = 4.5e-10, P = 4.5e-10
 Identities = 34/86 (39%), Positives = 55/86 (63%)

Query:   187 KLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKE 246
             KLF+ GL+  T+EK L A F  +G +VEV ++ D+ + +S+G+AF+ + +   A  A ++
Sbjct:     9 KLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARD 68

Query:   247 MNGKIINGWMIVVDVAKTTPKYSRGR 272
             MNGK ++G  I V+ A T P +  GR
Sbjct:    69 MNGKSLDGKAIKVEQA-TKPSFESGR 93


>UNIPROTKB|E2R068 [details] [associations]
            symbol:RBMX "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            GeneTree:ENSGT00700000104336 InterPro:IPR012604 Pfam:PF08081
            OMA:PFFKGMS EMBL:AAEX03026954 Ensembl:ENSCAFT00000030124
            Uniprot:E2R068
        Length = 392

 Score = 166 (63.5 bits), Expect = 4.5e-10, P = 4.5e-10
 Identities = 34/86 (39%), Positives = 55/86 (63%)

Query:   187 KLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKE 246
             KLF+ GL+  T+EK L A F  +G +VEV ++ D+ + +S+G+AF+ + +   A  A ++
Sbjct:    10 KLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARD 69

Query:   247 MNGKIINGWMIVVDVAKTTPKYSRGR 272
             MNGK ++G  I V+ A T P +  GR
Sbjct:    70 MNGKSLDGKAIKVEQA-TKPSFESGR 94


>UNIPROTKB|Q29RT0 [details] [associations]
            symbol:RBMX "RNA-binding motif protein, X chromosome"
            species:9913 "Bos taurus" [GO:0044530 "supraspliceosomal complex"
            evidence=ISS] [GO:0000381 "regulation of alternative mRNA splicing,
            via spliceosome" evidence=ISS] [GO:0048026 "positive regulation of
            mRNA splicing, via spliceosome" evidence=ISS] [GO:0045944 "positive
            regulation of transcription from RNA polymerase II promoter"
            evidence=ISS] [GO:0001047 "core promoter binding" evidence=ISS]
            [GO:0070062 "extracellular vesicular exosome" evidence=ISS]
            [GO:0006366 "transcription from RNA polymerase II promoter"
            evidence=ISS] [GO:0003682 "chromatin binding" evidence=ISS]
            [GO:0003723 "RNA binding" evidence=ISS] [GO:0051260 "protein
            homooligomerization" evidence=ISS] [GO:0048025 "negative regulation
            of mRNA splicing, via spliceosome" evidence=ISS] [GO:0071013
            "catalytic step 2 spliceosome" evidence=ISS] [GO:0005719 "nuclear
            euchromatin" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
            [GO:0003729 "mRNA binding" evidence=ISS] [GO:0071347 "cellular
            response to interleukin-1" evidence=ISS] [GO:0006509 "membrane
            protein ectodomain proteolysis" evidence=ISS] [GO:0008380 "RNA
            splicing" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0008380 GO:GO:0000166 GO:GO:0070062 GO:GO:0051260
            GO:GO:0003729 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0045944
            GO:GO:0003682 GO:GO:0006366 GO:GO:0006509 GO:GO:0001047
            GO:GO:0005719 GO:GO:0071347 GO:GO:0071013 GO:GO:0048025
            eggNOG:COG0724 GO:GO:0048026 GO:GO:0000381 GO:GO:0044530
            EMBL:BC114040 IPI:IPI00721392 RefSeq:NP_001040075.1
            RefSeq:XP_001250252.1 UniGene:Bt.59490 ProteinModelPortal:Q29RT0
            SMR:Q29RT0 Ensembl:ENSBTAT00000066112 GeneID:617969 GeneID:782306
            KEGG:bta:617969 KEGG:bta:782306 CTD:27288
            GeneTree:ENSGT00700000104336 HOGENOM:HOG000276235
            HOVERGEN:HBG063314 InParanoid:Q29RT0 OMA:GDFDLRP OrthoDB:EOG4WSWBK
            NextBio:20900925 InterPro:IPR012604 Pfam:PF08081 Uniprot:Q29RT0
        Length = 396

 Score = 166 (63.5 bits), Expect = 4.6e-10, P = 4.6e-10
 Identities = 35/86 (40%), Positives = 55/86 (63%)

Query:   187 KLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKE 246
             KLF+ GL+  T EK+L A F  +G + EV ++ D+ + +S+G+AFI + +   A AA+++
Sbjct:     9 KLFIGGLNLETDEKSLEATFGKYGRISEVLLMKDRETNKSRGFAFITFESPADAKAAVRD 68

Query:   247 MNGKIINGWMIVVDVAKTTPKYSRGR 272
             MNGK ++G  I V  A T P +  GR
Sbjct:    69 MNGKSLDGKAIKVAQA-TKPAFESGR 93


>TAIR|locus:2019622 [details] [associations]
            symbol:GR-RBP5 "AT1G74230" species:3702 "Arabidopsis
            thaliana" [GO:0003723 "RNA binding" evidence=ISS;IDA] [GO:0005634
            "nucleus" evidence=ISM] [GO:0008150 "biological_process"
            evidence=ND] [GO:0005739 "mitochondrion" evidence=IDA] [GO:0005524
            "ATP binding" evidence=IDA] [GO:0005507 "copper ion binding"
            evidence=IDA] [GO:0010228 "vegetative to reproductive phase
            transition of meristem" evidence=RCA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005739 GO:GO:0005524
            Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0005507 eggNOG:COG0724
            EMBL:AC020579 HSSP:Q14103 KO:K12741 EMBL:BT002037 EMBL:BT006315
            IPI:IPI00516639 PIR:F96770 RefSeq:NP_177563.1 UniGene:At.18152
            ProteinModelPortal:Q9C909 SMR:Q9C909 PaxDb:Q9C909 PRIDE:Q9C909
            EnsemblPlants:AT1G74230.1 GeneID:843763 KEGG:ath:AT1G74230
            GeneFarm:3954 TAIR:At1g74230 InParanoid:Q9C909 OMA:TERGSGF
            ProtClustDB:CLSN2914559 Genevestigator:Q9C909 Uniprot:Q9C909
        Length = 289

 Score = 162 (62.1 bits), Expect = 5.6e-10, P = 5.6e-10
 Identities = 37/96 (38%), Positives = 64/96 (66%)

Query:   168 NSMVPSDSSEASPTQ-IKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRS 226
             +S V + SS     + + + K+FV G+S+ T E  LR AF  +GE+V+ KII+D+ + RS
Sbjct:    15 SSHVTASSSMLQSIRCMSSSKIFVGGISYSTDEFGLREAFSKYGEVVDAKIIVDRETGRS 74

Query:   227 KGYAFIEYTTEEAASAALKEMNGKIINGWMIVVDVA 262
             +G+AF+ +T+ E AS A+ +++G+ ++G  I V+ A
Sbjct:    75 RGFAFVTFTSTEEASNAM-QLDGQDLHGRRIRVNYA 109


>UNIPROTKB|Q43472 [details] [associations]
            symbol:blt801 "Glycine-rich RNA-binding protein blt801"
            species:4513 "Hordeum vulgare" [GO:0003697 "single-stranded DNA
            binding" evidence=IDA] [GO:0003723 "RNA binding" evidence=IDA]
            [GO:0009409 "response to cold" evidence=IDA] [GO:0009737 "response
            to abscisic acid stimulus" evidence=IDA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0009737 GO:GO:0000166 GO:GO:0009409 GO:GO:0006397
            Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723 GO:GO:0003697
            EMBL:U49482 PIR:S71453 HSSP:P11940 ProteinModelPortal:Q43472
            Gramene:Q43472 Genevestigator:Q43472 Uniprot:Q43472
        Length = 161

 Score = 146 (56.5 bits), Expect = 5.7e-10, P = 5.7e-10
 Identities = 27/78 (34%), Positives = 54/78 (69%)

Query:   187 KLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKE 246
             + FV GL + T +++L+ AF  +G++++ KII D+ + RS+G+ F+ + ++EA   A++ 
Sbjct:     7 RCFVGGLRWATDDQSLQNAFSKYGDVIDSKIITDRETGRSRGFGFVTFASDEAMRQAIEA 66

Query:   247 MNGKIINGWMIVVDVAKT 264
             MNG+ ++G  I V+ A++
Sbjct:    67 MNGQDLDGRNITVNEAQS 84


>MGI|MGI:1343045 [details] [associations]
            symbol:Rbmxl1 "RNA binding motif protein, X linked-like-1"
            species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0000381 "regulation of alternative mRNA splicing,
            via spliceosome" evidence=ISO] [GO:0001047 "core promoter binding"
            evidence=IDA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0003682 "chromatin binding" evidence=IDA] [GO:0003723 "RNA
            binding" evidence=ISO] [GO:0005515 "protein binding" evidence=IPI]
            [GO:0005634 "nucleus" evidence=IDA] [GO:0006376 "mRNA splice site
            selection" evidence=ISO] [GO:0006397 "mRNA processing"
            evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0030529
            "ribonucleoprotein complex" evidence=IEA] [GO:0044530
            "supraspliceosomal complex" evidence=ISO] [GO:0045944 "positive
            regulation of transcription from RNA polymerase II promoter"
            evidence=IMP;IDA] [GO:0048025 "negative regulation of mRNA
            splicing, via spliceosome" evidence=ISO] [GO:0048026 "positive
            regulation of mRNA splicing, via spliceosome" evidence=ISO]
            [GO:0051260 "protein homooligomerization" evidence=ISO]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 MGI:MGI:1343045 GO:GO:0008380 GO:GO:0000166
            GO:GO:0070062 GO:GO:0051260 GO:GO:0003729 GO:GO:0006397
            Gene3D:3.30.70.330 GO:GO:0045944 GO:GO:0003682 GO:GO:0006366
            GO:GO:0006509 GO:GO:0001047 GO:GO:0005719 GO:GO:0071347
            GO:GO:0071013 GO:GO:0048025 eggNOG:COG0724 GO:GO:0048026
            GO:GO:0000381 GO:GO:0044530 HSSP:Q61474
            GeneTree:ENSGT00700000104336 HOGENOM:HOG000276235
            HOVERGEN:HBG063314 InterPro:IPR012604 Pfam:PF08081 KO:K12885
            CTD:494115 EMBL:AF031568 EMBL:AK041927 EMBL:BC011441 EMBL:BC089350
            IPI:IPI00663587 RefSeq:NP_001239018.1 RefSeq:NP_033059.2
            UniGene:Mm.24718 ProteinModelPortal:Q91VM5 SMR:Q91VM5 IntAct:Q91VM5
            STRING:Q91VM5 PhosphoSite:Q91VM5 PaxDb:Q91VM5 PRIDE:Q91VM5
            Ensembl:ENSMUST00000049245 GeneID:19656 KEGG:mmu:19656
            UCSC:uc009mhz.1 InParanoid:Q91VM5 OMA:ILLMKDR OrthoDB:EOG4001KF
            NextBio:296934 Bgee:Q91VM5 Genevestigator:Q91VM5 Uniprot:Q91VM5
        Length = 388

 Score = 165 (63.1 bits), Expect = 5.9e-10, P = 5.9e-10
 Identities = 33/86 (38%), Positives = 55/86 (63%)

Query:   187 KLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKE 246
             KLF+ GL+  T+EK L A F  +G +VE+ ++ D+ + +S+G+AF+ + +   A  A ++
Sbjct:     9 KLFIGGLNTETNEKALEAVFGKYGRIVEILLMKDRETNKSRGFAFVTFESPADAKDAARD 68

Query:   247 MNGKIINGWMIVVDVAKTTPKYSRGR 272
             MNGK ++G  I V+ A T P +  GR
Sbjct:    69 MNGKSLDGKAIKVEQA-TKPSFESGR 93


>UNIPROTKB|F8W646 [details] [associations]
            symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            EMBL:AC078778 HGNC:HGNC:5031 ChiTaRS:HNRNPA1 IPI:IPI01022306
            ProteinModelPortal:F8W646 SMR:F8W646 PRIDE:F8W646
            Ensembl:ENST00000547708 ArrayExpress:F8W646 Bgee:F8W646
            Uniprot:F8W646
        Length = 156

 Score = 143 (55.4 bits), Expect = 1.2e-09, P = 1.2e-09
 Identities = 36/104 (34%), Positives = 60/104 (57%)

Query:   170 MVPSDSSEASPTQIKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGY 229
             M  S+S +  P Q++  KLF+ GLSF T++++LR+ FE +G L +  ++ D  +KRS+G+
Sbjct:     1 MSKSESPK-EPEQLR--KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGF 57

Query:   230 AFIEYTTEEAASAALKEMNGKIINGWMIVVDVAKTTPKYSRGRP 273
              F+ Y T E   AA+     K+ +G   VV+  +   +    RP
Sbjct:    58 GFVTYATVEEVDAAMNARPHKV-DGR--VVEPKRAVSREDSQRP 98


>TAIR|locus:2049359 [details] [associations]
            symbol:GRP7 "AT2G21660" species:3702 "Arabidopsis
            thaliana" [GO:0003723 "RNA binding" evidence=ISS;IDA] [GO:0005739
            "mitochondrion" evidence=ISM] [GO:0005634 "nucleus"
            evidence=ISS;IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0003690
            "double-stranded DNA binding" evidence=IDA] [GO:0003697
            "single-stranded DNA binding" evidence=IDA] [GO:0009409 "response
            to cold" evidence=IGI;IEP] [GO:0009414 "response to water
            deprivation" evidence=IEP] [GO:0009651 "response to salt stress"
            evidence=IEP;RCA] [GO:0046686 "response to cadmium ion"
            evidence=IEP;RCA] [GO:0010501 "RNA secondary structure unwinding"
            evidence=IDA] [GO:0032508 "DNA duplex unwinding" evidence=IDA]
            [GO:0045087 "innate immune response" evidence=IMP;IDA] [GO:0005777
            "peroxisome" evidence=IDA] [GO:0006406 "mRNA export from nucleus"
            evidence=IMP] [GO:0006970 "response to osmotic stress"
            evidence=IMP] [GO:0010119 "regulation of stomatal movement"
            evidence=IMP] [GO:0009507 "chloroplast" evidence=IDA] [GO:0010228
            "vegetative to reproductive phase transition of meristem"
            evidence=RCA;IMP] [GO:0010043 "response to zinc ion" evidence=IEP]
            [GO:0005829 "cytosol" evidence=IDA] [GO:0009506 "plasmodesma"
            evidence=IDA] [GO:0048046 "apoplast" evidence=IDA] [GO:0006094
            "gluconeogenesis" evidence=RCA] [GO:0006096 "glycolysis"
            evidence=RCA] [GO:0006833 "water transport" evidence=RCA]
            [GO:0006972 "hyperosmotic response" evidence=RCA] [GO:0007030
            "Golgi organization" evidence=RCA] [GO:0007623 "circadian rhythm"
            evidence=IEP;RCA;TAS] [GO:0009266 "response to temperature
            stimulus" evidence=RCA] [GO:0000380 "alternative mRNA splicing, via
            spliceosome" evidence=IMP] [GO:0003729 "mRNA binding" evidence=IDA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0005829 GO:GO:0009506 GO:GO:0005634
            GO:GO:0009507 GO:GO:0046686 EMBL:CP002685 GenomeReviews:CT485783_GR
            GO:GO:0005777 GO:GO:0010119 GO:GO:0000166 GO:GO:0010043
            GO:GO:0048046 GO:GO:0007623 GO:GO:0009651 GO:GO:0009409
            GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0045087 GO:GO:0003690
            GO:GO:0003697 GO:GO:0006406 GO:GO:0010228 eggNOG:COG0724
            GO:GO:0000380 HOGENOM:HOG000276232 GO:GO:0010501 GO:GO:0032508
            EMBL:AC007119 UniGene:At.22672 UniGene:At.23628 EMBL:Z14987
            EMBL:L00648 EMBL:L04172 EMBL:AF428381 EMBL:AY054284 EMBL:AY042826
            EMBL:AY072523 EMBL:AK318968 EMBL:AY085214 IPI:IPI00523161
            IPI:IPI00542675 PIR:S30147 RefSeq:NP_179760.1 UniGene:At.24279
            UniGene:At.72988 ProteinModelPortal:Q03250 SMR:Q03250 IntAct:Q03250
            MINT:MINT-1163877 STRING:Q03250 PaxDb:Q03250 PRIDE:Q03250
            ProMEX:Q03250 EnsemblPlants:AT2G21660.1 GeneID:816705
            KEGG:ath:AT2G21660 TAIR:At2g21660 InParanoid:Q03250 OMA:SQHEDGH
            ProtClustDB:CLSN2913158 Genevestigator:Q03250 Uniprot:Q03250
        Length = 176

 Score = 143 (55.4 bits), Expect = 1.2e-09, P = 1.2e-09
 Identities = 27/78 (34%), Positives = 52/78 (66%)

Query:   187 KLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKE 246
             + FV GL++ T ++ L  AF  +G++++ KII D+ + RS+G+ F+ +  E+A   A++ 
Sbjct:     9 RCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAIEG 68

Query:   247 MNGKIINGWMIVVDVAKT 264
             MNG+ ++G  I V+ A++
Sbjct:    69 MNGQDLDGRSITVNEAQS 86


>TAIR|locus:2101714 [details] [associations]
            symbol:U1-70K "AT3G50670" species:3702 "Arabidopsis
            thaliana" [GO:0003723 "RNA binding" evidence=ISS] [GO:0005634
            "nucleus" evidence=ISM;IDA] [GO:0005515 "protein binding"
            evidence=IPI] [GO:0000398 "mRNA splicing, via spliceosome"
            evidence=IDA;RCA] [GO:0006355 "regulation of transcription,
            DNA-dependent" evidence=RCA] [GO:0030422 "production of siRNA
            involved in RNA interference" evidence=RCA] [GO:0035196 "production
            of miRNAs involved in gene silencing by miRNA" evidence=RCA]
            [GO:0043687 "post-translational protein modification" evidence=RCA]
            [GO:0045893 "positive regulation of transcription, DNA-dependent"
            evidence=RCA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 EMBL:CP002686
            GenomeReviews:BA000014_GR GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003723 GO:GO:0030529 EMBL:AL132979 GO:GO:0000398
            eggNOG:COG0724 EMBL:M93439 EMBL:U52909 EMBL:U52910 EMBL:AY039874
            EMBL:AY094003 IPI:IPI00517859 IPI:IPI00520131 PIR:S71367
            RefSeq:NP_190636.1 RefSeq:NP_850676.1 UniGene:At.25571
            ProteinModelPortal:Q42404 SMR:Q42404 IntAct:Q42404 STRING:Q42404
            PaxDb:Q42404 PRIDE:Q42404 EnsemblPlants:AT3G50670.1 GeneID:824230
            KEGG:ath:AT3G50670 GeneFarm:4534 TAIR:At3g50670
            HOGENOM:HOG000236289 InParanoid:Q42404 KO:K11093 OMA:KKSRGYL
            PhylomeDB:Q42404 ProtClustDB:CLSN2918318 Genevestigator:Q42404
            GermOnline:AT3G50670 InterPro:IPR022023 Pfam:PF12220 Uniprot:Q42404
        Length = 427

 Score = 163 (62.4 bits), Expect = 1.3e-09, P = 1.3e-09
 Identities = 37/105 (35%), Positives = 62/105 (59%)

Query:   172 PSDSSEASPTQIKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAF 231
             P++   A+    KT  LFV+ L++ +SE  ++  FE +G +  V ++ D+++ + KGYAF
Sbjct:   126 PNNDPNATGDPYKT--LFVSRLNYESSESKIKREFESYGPIKRVHLVTDQLTNKPKGYAF 183

Query:   232 IEYTTEEAASAALKEMNGKIINGWMIVVDV--AKTTPKYSRGRPR 274
             IEY       AA K+ +G+ I+G  ++VDV   +T P +   RPR
Sbjct:   184 IEYMHTRDMKAAYKQADGQKIDGRRVLVDVERGRTVPNW---RPR 225


>ZFIN|ZDB-GENE-030131-579 [details] [associations]
            symbol:rbmx "RNA binding motif protein, X-linked"
            species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0001047 "core promoter binding" evidence=ISS] [GO:0003682
            "chromatin binding" evidence=ISS] [GO:0005719 "nuclear euchromatin"
            evidence=ISS] [GO:0006509 "membrane protein ectodomain proteolysis"
            evidence=ISS] [GO:0044530 "supraspliceosomal complex" evidence=ISS]
            [GO:0045944 "positive regulation of transcription from RNA
            polymerase II promoter" evidence=ISS] [GO:0048025 "negative
            regulation of mRNA splicing, via spliceosome" evidence=ISS]
            [GO:0048026 "positive regulation of mRNA splicing, via spliceosome"
            evidence=ISS] [GO:0071013 "catalytic step 2 spliceosome"
            evidence=ISS] [GO:0006366 "transcription from RNA polymerase II
            promoter" evidence=ISS] [GO:0051260 "protein homooligomerization"
            evidence=ISS] [GO:0000381 "regulation of alternative mRNA splicing,
            via spliceosome" evidence=ISS] [GO:0003723 "RNA binding"
            evidence=IEA;ISS] [GO:0003729 "mRNA binding" evidence=ISS]
            [GO:0070062 "extracellular vesicular exosome" evidence=ISS]
            [GO:0071347 "cellular response to interleukin-1" evidence=ISS]
            [GO:0030529 "ribonucleoprotein complex" evidence=IEA] [GO:0005681
            "spliceosomal complex" evidence=IEA] [GO:0007275 "multicellular
            organismal development" evidence=IEA] [GO:0006351 "transcription,
            DNA-dependent" evidence=IEA] [GO:0008380 "RNA splicing"
            evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0006397 "mRNA
            processing" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-030131-579
            GO:GO:0007275 GO:GO:0008380 GO:GO:0000166 GO:GO:0070062
            GO:GO:0051260 GO:GO:0003729 GO:GO:0006397 Gene3D:3.30.70.330
            GO:GO:0045944 GO:GO:0003682 GO:GO:0006366 GO:GO:0006509
            GO:GO:0001047 GO:GO:0005719 GO:GO:0071347 GO:GO:0071013
            GO:GO:0048025 eggNOG:COG0724 GO:GO:0048026 GO:GO:0000381
            GO:GO:0044530 HSSP:Q14103 GeneTree:ENSGT00700000104336
            HOGENOM:HOG000276235 HOVERGEN:HBG063314 InterPro:IPR012604
            Pfam:PF08081 EMBL:AJ717349 EMBL:AY394938 EMBL:AL929434
            EMBL:BC049509 EMBL:BC071326 IPI:IPI00509177 RefSeq:NP_997763.1
            UniGene:Dr.76840 ProteinModelPortal:Q7ZWA3 SMR:Q7ZWA3 STRING:Q7ZWA3
            PRIDE:Q7ZWA3 Ensembl:ENSDART00000007927 Ensembl:ENSDART00000131024
            GeneID:321860 KEGG:dre:321860 CTD:27316 InParanoid:Q6TLG7 KO:K12885
            OMA:PFFKGMS OrthoDB:EOG4CNQSK NextBio:20807559 ArrayExpress:Q7ZWA3
            Bgee:Q7ZWA3 Uniprot:Q7ZWA3
        Length = 379

 Score = 162 (62.1 bits), Expect = 1.3e-09, P = 1.3e-09
 Identities = 37/87 (42%), Positives = 55/87 (63%)

Query:   187 KLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKE 246
             KLF+ GL+  TSEK L A F  FG + EV ++ D+ + +S+G+AF+ Y     A  A +E
Sbjct:     9 KLFIGGLNTETSEKVLEAYFSKFGRISEVLLMKDRETNKSRGFAFVTYENPGDAKDAARE 68

Query:   247 MNGKIINGWMIVVDVAKTTPKY-SRGR 272
             MNGK ++G  I V+ A T P++ + GR
Sbjct:    69 MNGKPLDGKPIKVEQA-TKPQFETSGR 94


>UNIPROTKB|F1NZD3 [details] [associations]
            symbol:RBMX "Uncharacterized protein" species:9031 "Gallus
            gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
            "nucleic acid binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 GO:GO:0070062 GO:GO:0003729 Gene3D:3.30.70.330
            GO:GO:0006366 GO:GO:0006509 GO:GO:0005719 GO:GO:0071347
            GO:GO:0071013 GO:GO:0000381 GeneTree:ENSGT00700000104336
            InterPro:IPR012604 Pfam:PF08081 OMA:PFFKGMS EMBL:AADN02013316
            EMBL:AADN02013317 IPI:IPI00575141 Ensembl:ENSGALT00000010428
            Uniprot:F1NZD3
        Length = 385

 Score = 162 (62.1 bits), Expect = 1.3e-09, P = 1.3e-09
 Identities = 34/88 (38%), Positives = 55/88 (62%)

Query:   187 KLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKE 246
             KLF+ GL+  T+EK L A F  +G +VEV ++ D+ + +S+G+AF+ + +   A  A ++
Sbjct:     9 KLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARD 68

Query:   247 MNGKIINGWMIVVDVAKTTPKYSRGRPR 274
             MNGK ++G  I V+ A T P +  G  R
Sbjct:    69 MNGKSLDGKAIKVEQA-TKPSFESGGRR 95


>UNIPROTKB|B4E2X2 [details] [associations]
            symbol:CIRBP "Cold-inducible RNA-binding protein"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            EMBL:AC004221 HOVERGEN:HBG107480 EMBL:AC004258 UniGene:Hs.618145
            UniGene:Hs.634522 HGNC:HGNC:1982 HOGENOM:HOG000276232
            OrthoDB:EOG4HHP40 ChiTaRS:CIRBP EMBL:AK304470 IPI:IPI00909097
            SMR:B4E2X2 STRING:B4E2X2 Ensembl:ENST00000413636 UCSC:uc010xgl.1
            Uniprot:B4E2X2
        Length = 263

 Score = 157 (60.3 bits), Expect = 1.6e-09, P = 1.6e-09
 Identities = 31/76 (40%), Positives = 50/76 (65%)

Query:   187 KLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKE 246
             KLFV GLSF T+E++L   F  +G++ EV ++ D+ ++RS+G+ F+ +   + A  A+  
Sbjct:     7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66

Query:   247 MNGKIINGWMIVVDVA 262
             MNGK ++G  I VD A
Sbjct:    67 MNGKSVDGRQIRVDQA 82


>UNIPROTKB|K7ELT6 [details] [associations]
            symbol:CIRBP "Cold-inducible RNA-binding protein"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
            HGNC:HGNC:1982 Ensembl:ENST00000590347 Ensembl:ENST00000591055
            Uniprot:K7ELT6
        Length = 135

 Score = 142 (55.0 bits), Expect = 1.6e-09, P = 1.6e-09
 Identities = 26/65 (40%), Positives = 44/65 (67%)

Query:   187 KLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKE 246
             KLFV GLSF T+E++L   F  +G++ EV ++ D+ ++RS+G+ F+ +   + A  A+  
Sbjct:     7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66

Query:   247 MNGKI 251
             MNGK+
Sbjct:    67 MNGKV 71


>UNIPROTKB|I3LH22 [details] [associations]
            symbol:LOC100514264 "Uncharacterized protein" species:9823
            "Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            GeneTree:ENSGT00700000104309 EMBL:CU915617
            Ensembl:ENSSSCT00000023009 OMA:QALEDHI Uniprot:I3LH22
        Length = 161

 Score = 142 (55.0 bits), Expect = 1.6e-09, P = 1.6e-09
 Identities = 33/86 (38%), Positives = 51/86 (59%)

Query:   187 KLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKE 246
             KLFV GL+F + ++ L      F  + EV I+ D+ ++RS+G+ FI +T  E AS  ++ 
Sbjct:     7 KLFVGGLNFNSDKQALEDHISSFRPISEVVIVKDRETQRSRGFGFITFTNPEHASNVMRA 66

Query:   247 MNGKIINGWMIVVDVA-KTTPKYSRG 271
             MNG+ ++G  I VD A K+     RG
Sbjct:    67 MNGESLDGRQIHVDHAGKSAQGTRRG 92


>TAIR|locus:2044370 [details] [associations]
            symbol:AT2G46780 species:3702 "Arabidopsis thaliana"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
            acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
            [GO:0005737 "cytoplasm" evidence=ISM] [GO:0008150
            "biological_process" evidence=ND] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 HOGENOM:HOG000276232 EMBL:BT022057
            IPI:IPI00944264 RefSeq:NP_182201.4 UniGene:At.22279
            ProteinModelPortal:Q501B0 SMR:Q501B0 PRIDE:Q501B0
            EnsemblPlants:AT2G46780.1 GeneID:819291 KEGG:ath:AT2G46780
            TAIR:At2g46780 OMA:FPYSTYG PhylomeDB:Q501B0 ProtClustDB:CLSN2722623
            Genevestigator:Q501B0 Uniprot:Q501B0
        Length = 336

 Score = 160 (61.4 bits), Expect = 1.7e-09, P = 1.7e-09
 Identities = 41/116 (35%), Positives = 59/116 (50%)

Query:   167 QNSMVPSDSSEASPTQIKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRS 226
             Q      +    + T  K  K+FV GL++ T   T+R  FE FGE+VE  +I DK + RS
Sbjct:     3 QQRQFQMEGGNNNTTDTKLTKIFVGGLAWETQRDTMRRYFEQFGEIVEAVVITDKNTGRS 62

Query:   227 KGYAFIEYTTEEAASAALKEMN----GKIINGWMIVVDVAK----TTPKYSRGRPR 274
             KGY F+ +   EAA  A + MN    G+  N  +  +   K    T+P++  GR R
Sbjct:    63 KGYGFVTFKEAEAAMRACQNMNPVIDGRRANCNLACLGAQKPRPPTSPRHGTGRFR 118


>RGD|1306751 [details] [associations]
            symbol:Rbmxrtl "RNA binding motif protein, X chromosome
            retrogene-like" species:10116 "Rattus norvegicus" [GO:0000166
            "nucleotide binding" evidence=IEA] [GO:0000381 "regulation of
            alternative mRNA splicing, via spliceosome" evidence=IDA]
            [GO:0001047 "core promoter binding" evidence=ISO] [GO:0003682
            "chromatin binding" evidence=ISO] [GO:0003723 "RNA binding"
            evidence=IDA] [GO:0003729 "mRNA binding" evidence=ISS] [GO:0005515
            "protein binding" evidence=IPI] [GO:0005634 "nucleus"
            evidence=ISO;ISS] [GO:0005719 "nuclear euchromatin" evidence=ISS]
            [GO:0006366 "transcription from RNA polymerase II promoter"
            evidence=ISS] [GO:0006376 "mRNA splice site selection"
            evidence=IDA] [GO:0006509 "membrane protein ectodomain proteolysis"
            evidence=ISS] [GO:0007275 "multicellular organismal development"
            evidence=IEA] [GO:0044530 "supraspliceosomal complex" evidence=IDA]
            [GO:0045944 "positive regulation of transcription from RNA
            polymerase II promoter" evidence=ISO;ISS] [GO:0048025 "negative
            regulation of mRNA splicing, via spliceosome" evidence=IDA]
            [GO:0048026 "positive regulation of mRNA splicing, via spliceosome"
            evidence=IDA] [GO:0051260 "protein homooligomerization"
            evidence=IDA] [GO:0070062 "extracellular vesicular exosome"
            evidence=ISS] [GO:0071013 "catalytic step 2 spliceosome"
            evidence=ISS] [GO:0071347 "cellular response to interleukin-1"
            evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 RGD:1306751 GO:GO:0007275
            GO:GO:0000166 GO:GO:0070062 GO:GO:0051260 GO:GO:0003729
            Gene3D:3.30.70.330 GO:GO:0045944 GO:GO:0006366 GO:GO:0006509
            GO:GO:0005719 GO:GO:0071347 GO:GO:0071013 GO:GO:0048025
            eggNOG:COG0724 GO:GO:0048026 GO:GO:0006376 GO:GO:0000381
            GO:GO:0044530 GeneTree:ENSGT00700000104336 HOGENOM:HOG000276235
            HOVERGEN:HBG063314 InterPro:IPR012604 Pfam:PF08081 KO:K12885
            OMA:ILLMKDR OrthoDB:EOG4001KF UniGene:Rn.19966 EMBL:AABR03113401
            IPI:IPI00559910 RefSeq:NP_001100890.1 ProteinModelPortal:P84586
            SMR:P84586 STRING:P84586 PhosphoSite:P84586 PRIDE:P84586
            Ensembl:ENSRNOT00000016184 GeneID:307779 KEGG:rno:307779
            UCSC:RGD:1306751 CTD:307779 InParanoid:P84586 NextBio:657858
            Genevestigator:P84586 GermOnline:ENSRNOG00000012138 Uniprot:P84586
        Length = 388

 Score = 161 (61.7 bits), Expect = 1.8e-09, P = 1.8e-09
 Identities = 32/86 (37%), Positives = 54/86 (62%)

Query:   187 KLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKE 246
             KLF+ GL+  T+EK L A F  +G +VE+ ++ D+ + +S+G+AF+ + +   A    ++
Sbjct:     9 KLFIGGLNTETNEKALEAVFGKYGRIVEILLMKDRETNKSRGFAFVTFESPADAKDVARD 68

Query:   247 MNGKIINGWMIVVDVAKTTPKYSRGR 272
             MNGK ++G  I V+ A T P +  GR
Sbjct:    69 MNGKSLDGKAIKVEQA-TKPSFESGR 93


>RGD|1585845 [details] [associations]
            symbol:Rbmxl1 "RNA binding motif protein, X-linked-like 1"
            species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
            "nucleus" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
            [GO:0008380 "RNA splicing" evidence=IEA] [GO:0030529
            "ribonucleoprotein complex" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            RGD:1585845 GO:GO:0005634 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
            Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0030529
            GeneTree:ENSGT00700000104336 InterPro:IPR012604 Pfam:PF08081
            OrthoDB:EOG4CNQSK EMBL:AC136101 IPI:IPI00763272 UniGene:Rn.19966
            Ensembl:ENSRNOT00000041672 UCSC:RGD:1585845 Uniprot:D4AE41
        Length = 388

 Score = 161 (61.7 bits), Expect = 1.8e-09, P = 1.8e-09
 Identities = 32/86 (37%), Positives = 54/86 (62%)

Query:   187 KLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKE 246
             KLF+ GL+  T+EK L A F  +G +VE+ ++ D+ + +S+G+AF+ + +   A    ++
Sbjct:     9 KLFIGGLNTETNEKALEAVFGKYGRIVEILLMKDRETNKSRGFAFVTFESPADAKDVARD 68

Query:   247 MNGKIINGWMIVVDVAKTTPKYSRGR 272
             MNGK ++G  I V+ A T P +  GR
Sbjct:    69 MNGKSLDGKAIKVEQA-TKPSFESGR 93


>TAIR|locus:2055956 [details] [associations]
            symbol:UBA1A species:3702 "Arabidopsis thaliana"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
            acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
            [GO:0005634 "nucleus" evidence=ISM;IDA] [GO:0017091 "AU-rich
            element binding" evidence=IDA] [GO:0048255 "mRNA stabilization"
            evidence=NAS] [GO:0000398 "mRNA splicing, via spliceosome"
            evidence=RCA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 EMBL:CP002685
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0048255
            IPI:IPI00520548 RefSeq:NP_850021.1 UniGene:At.25483
            ProteinModelPortal:F4IIL5 SMR:F4IIL5 EnsemblPlants:AT2G22090.2
            GeneID:816744 KEGG:ath:AT2G22090 OMA:WETTRET Uniprot:F4IIL5
        Length = 347

 Score = 160 (61.4 bits), Expect = 1.8e-09, P = 1.8e-09
 Identities = 31/85 (36%), Positives = 53/85 (62%)

Query:   169 SMVPSDSSEASPTQIKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKG 228
             S + S   EA+   +  +K+FV GL + T+ +TL   FEG+GE+ E  +++DK + ++KG
Sbjct:    87 SSIYSAVVEAADRDVTHRKIFVYGLPWETTRETLVGVFEGYGEIEECTVVIDKATGKAKG 146

Query:   229 YAFIEYTTEEAASAALKEMNGKIIN 253
             + F+ + T + A  ALKE   +I+N
Sbjct:   147 FGFVMFKTRKGAKEALKEPKKRILN 171


>UNIPROTKB|O75526 [details] [associations]
            symbol:RBMXL2 "RNA-binding motif protein, X-linked-like-2"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0030529
            "ribonucleoprotein complex" evidence=IEA] [GO:0005634 "nucleus"
            evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003723 GO:GO:0030529 CTD:27288 HOGENOM:HOG000276235
            HOVERGEN:HBG063314 OMA:GDFDLRP OrthoDB:EOG4WSWBK InterPro:IPR012604
            Pfam:PF08081 eggNOG:NOG140744 HSSP:Q14011 EMBL:AF069682
            EMBL:AC100875 EMBL:BC057796 EMBL:AF279289 IPI:IPI00004450
            RefSeq:NP_055284.3 UniGene:Hs.121605 ProteinModelPortal:O75526
            SMR:O75526 IntAct:O75526 STRING:O75526 PhosphoSite:O75526
            PaxDb:O75526 PRIDE:O75526 Ensembl:ENST00000306904 GeneID:27288
            KEGG:hsa:27288 UCSC:uc001mfc.2 GeneCards:GC11P007068
            H-InvDB:HIX0035856 H-InvDB:HIX0171337 HGNC:HGNC:17886 HPA:HPA038912
            HPA:HPA051842 MIM:605444 neXtProt:NX_O75526 PharmGKB:PA162400840
            InParanoid:O75526 PhylomeDB:O75526 GenomeRNAi:27288 NextBio:50232
            Bgee:O75526 CleanEx:HS_RBMXL2 Genevestigator:O75526 Uniprot:O75526
        Length = 392

 Score = 161 (61.7 bits), Expect = 1.8e-09, P = 1.8e-09
 Identities = 34/86 (39%), Positives = 53/86 (61%)

Query:   187 KLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKE 246
             KLF+ GL+  T EK L A F  +G +VEV ++ D+ + +S+G+AF+ + +   A AA ++
Sbjct:     9 KLFIGGLNLETDEKALEAEFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKAAARD 68

Query:   247 MNGKIINGWMIVVDVAKTTPKYSRGR 272
             MNGK ++G  I V  A T P +   R
Sbjct:    69 MNGKSLDGKAIKVAQA-TKPAFESSR 93


>UNIPROTKB|F6VZ39 [details] [associations]
            symbol:RBM38 "RNA-binding protein 38" species:9606 "Homo
            sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
            "nucleic acid binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL109955
            HGNC:HGNC:15818 IPI:IPI00927190 ProteinModelPortal:F6VZ39
            SMR:F6VZ39 PRIDE:F6VZ39 Ensembl:ENST00000344785 ArrayExpress:F6VZ39
            Bgee:F6VZ39 Uniprot:F6VZ39
        Length = 123

 Score = 141 (54.7 bits), Expect = 2.1e-09, P = 2.1e-09
 Identities = 30/76 (39%), Positives = 48/76 (63%)

Query:   187 KLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKE 246
             K+FV GL ++T++ +LR  FEGFG++ E  +I D+ + +S+GY F+      AA  A K+
Sbjct:    12 KIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKD 71

Query:   247 MNGKIINGWMIVVDVA 262
              N  II+G    V++A
Sbjct:    72 PN-PIIDGRKANVNLA 86


>UNIPROTKB|K7GMF5 [details] [associations]
            symbol:RBMX "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            Gene3D:3.30.70.330 GeneTree:ENSGT00700000104336 EMBL:FP102148
            Ensembl:ENSSSCT00000032763 Uniprot:K7GMF5
        Length = 80

 Score = 140 (54.3 bits), Expect = 2.7e-09, P = 2.7e-09
 Identities = 26/66 (39%), Positives = 45/66 (68%)

Query:   187 KLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKE 246
             KLF+ GL+  T+EK L A F  +G +VEV ++ D+ + +S+G+AF+ + +   A  A ++
Sbjct:    11 KLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARD 70

Query:   247 MNGKII 252
             MNGK++
Sbjct:    71 MNGKMM 76


>UNIPROTKB|H3BR27 [details] [associations]
            symbol:RBMX "RNA-binding motif protein, X chromosome,
            N-terminally processed" species:9606 "Homo sapiens" [GO:0000166
            "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
            binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL683813 HGNC:HGNC:9910
            ChiTaRS:RBMX SMR:H3BR27 Ensembl:ENST00000464781
            Ensembl:ENST00000568578 Uniprot:H3BR27
        Length = 78

 Score = 139 (54.0 bits), Expect = 3.5e-09, P = 3.5e-09
 Identities = 26/65 (40%), Positives = 44/65 (67%)

Query:   187 KLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKE 246
             KLF+ GL+  T+EK L A F  +G +VEV ++ D+ + +S+G+AF+ + +   A  A ++
Sbjct:     9 KLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARD 68

Query:   247 MNGKI 251
             MNGK+
Sbjct:    69 MNGKM 73


>UNIPROTKB|K7ELV6 [details] [associations]
            symbol:CIRBP "Cold-inducible RNA-binding protein"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
            HGNC:HGNC:1982 Ensembl:ENST00000588344 Uniprot:K7ELV6
        Length = 70

 Score = 139 (54.0 bits), Expect = 3.5e-09, P = 3.5e-09
 Identities = 26/64 (40%), Positives = 43/64 (67%)

Query:   187 KLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKE 246
             KLFV GLSF T+E++L   F  +G++ EV ++ D+ ++RS+G+ F+ +   + A  A+  
Sbjct:     7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66

Query:   247 MNGK 250
             MNGK
Sbjct:    67 MNGK 70


>TAIR|locus:2119505 [details] [associations]
            symbol:AT4G13860 species:3702 "Arabidopsis thaliana"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
            acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
            [GO:0005575 "cellular_component" evidence=ND] [GO:0008150
            "biological_process" evidence=ND] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 HSSP:P19339 HOGENOM:HOG000276232
            UniGene:At.33330 EMBL:BT014844 IPI:IPI00523584 RefSeq:NP_193122.2
            ProteinModelPortal:Q6ID29 SMR:Q6ID29 PRIDE:Q6ID29
            EnsemblPlants:AT4G13860.1 GeneID:827020 KEGG:ath:AT4G13860
            TAIR:At4g13860 InParanoid:Q6ID29 OMA:KIEEMFL PhylomeDB:Q6ID29
            Genevestigator:Q6ID29 Uniprot:Q6ID29
        Length = 87

 Score = 139 (54.0 bits), Expect = 3.5e-09, P = 3.5e-09
 Identities = 26/73 (35%), Positives = 47/73 (64%)

Query:   187 KLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKE 246
             +++V  LS  T++  LR AF G+G +V+  ++ D+ + RS+G+ F+ Y++   A AA+  
Sbjct:     4 RVYVGNLSPTTTDDMLREAFSGYGNVVDAIVMRDRYTDRSRGFGFVTYSSHSEAEAAVSG 63

Query:   247 MNGKIINGWMIVV 259
             M+GK +NG  + V
Sbjct:    64 MDGKELNGRRVSV 76


>ZFIN|ZDB-GENE-050306-51 [details] [associations]
            symbol:rbm8a "RNA binding motif protein 8A"
            species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0003723
            "RNA binding" evidence=IEA] [GO:0006396 "RNA processing"
            evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IEA] [GO:0000184
            "nuclear-transcribed mRNA catabolic process, nonsense-mediated
            decay" evidence=IEA] [GO:0006417 "regulation of translation"
            evidence=IEA] [GO:0006810 "transport" evidence=IEA] [GO:0051028
            "mRNA transport" evidence=IEA] [GO:0006397 "mRNA processing"
            evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0016607
            "nuclear speck" evidence=IEA] InterPro:IPR000504 InterPro:IPR008111
            InterPro:IPR012677 Pfam:PF00076 PRINTS:PR01738 PROSITE:PS50102
            SMART:SM00360 ZFIN:ZDB-GENE-050306-51 GO:GO:0005737 GO:GO:0006417
            GO:GO:0000184 GO:GO:0008380 GO:GO:0000166 GO:GO:0016607
            GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0051028
            eggNOG:COG0724 GeneTree:ENSGT00550000074641 CTD:9939
            HOGENOM:HOG000183826 KO:K12876 OMA:WILFVTS OrthoDB:EOG42822W
            EMBL:BC090261 IPI:IPI00505312 RefSeq:NP_001013363.1
            UniGene:Dr.76821 HSSP:Q9Y5S9 ProteinModelPortal:Q5D018 SMR:Q5D018
            STRING:Q5D018 PRIDE:Q5D018 Ensembl:ENSDART00000018253 GeneID:503767
            KEGG:dre:503767 InParanoid:Q5D018 NextBio:20866311 Bgee:Q5D018
            Uniprot:Q5D018
        Length = 174

 Score = 139 (54.0 bits), Expect = 3.5e-09, P = 3.5e-09
 Identities = 41/126 (32%), Positives = 62/126 (49%)

Query:   154 FGSENKDYGGNNLQNSMVPSDSSEASPTQ-IKTKKLFVTGLSFYTSEKTLRAAFEGFGEL 212
             FGSE             V  D  E  P + ++   LFVTG+    +E+ +   F  FGE+
Sbjct:    40 FGSEEGARSRVREDYDTVEQDGDEPGPQRSVEGWILFVTGVHEEATEEDVHDKFAEFGEI 99

Query:   213 VEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVD--VAKTTPKYSR 270
               + + +D+ +   KGYA +EY T + A AA++ +NG+ + G  I VD    +  PK  R
Sbjct:   100 KNLHLNLDRRTGYLKGYALVEYETYKEAQAAMEGLNGQELMGQPISVDWCFVRGPPKSKR 159

Query:   271 --GRPR 274
               GR R
Sbjct:   160 RGGRRR 165


>UNIPROTKB|Q6IRQ4 [details] [associations]
            symbol:rbmx "RNA-binding motif protein, X chromosome"
            species:8355 "Xenopus laevis" [GO:0000381 "regulation of
            alternative mRNA splicing, via spliceosome" evidence=ISS]
            [GO:0001047 "core promoter binding" evidence=ISS] [GO:0003682
            "chromatin binding" evidence=ISS] [GO:0003723 "RNA binding"
            evidence=ISS] [GO:0003729 "mRNA binding" evidence=ISS] [GO:0005634
            "nucleus" evidence=ISS] [GO:0005719 "nuclear euchromatin"
            evidence=ISS] [GO:0006366 "transcription from RNA polymerase II
            promoter" evidence=ISS] [GO:0006509 "membrane protein ectodomain
            proteolysis" evidence=ISS] [GO:0044530 "supraspliceosomal complex"
            evidence=ISS] [GO:0045944 "positive regulation of transcription
            from RNA polymerase II promoter" evidence=ISS] [GO:0048025
            "negative regulation of mRNA splicing, via spliceosome"
            evidence=ISS] [GO:0048026 "positive regulation of mRNA splicing,
            via spliceosome" evidence=ISS] [GO:0051260 "protein
            homooligomerization" evidence=ISS] [GO:0070062 "extracellular
            vesicular exosome" evidence=ISS] [GO:0071013 "catalytic step 2
            spliceosome" evidence=ISS] [GO:0071347 "cellular response to
            interleukin-1" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0007275
            GO:GO:0008380 GO:GO:0000166 GO:GO:0070062 GO:GO:0051260
            GO:GO:0003729 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0045944
            GO:GO:0003682 GO:GO:0006366 GO:GO:0006509 GO:GO:0001047
            GO:GO:0005719 GO:GO:0071347 GO:GO:0071013 GO:GO:0048025
            GO:GO:0048026 GO:GO:0000381 GO:GO:0044530 HOVERGEN:HBG063314
            InterPro:IPR012604 Pfam:PF08081 CTD:27316 KO:K12885 EMBL:BC070649
            RefSeq:NP_001084981.1 UniGene:Xl.25221 HSSP:P08579
            ProteinModelPortal:Q6IRQ4 SMR:Q6IRQ4 GeneID:432041 KEGG:xla:432041
            Xenbase:XB-GENE-6078824 Uniprot:Q6IRQ4
        Length = 370

 Score = 158 (60.7 bits), Expect = 3.7e-09, P = 3.7e-09
 Identities = 36/91 (39%), Positives = 57/91 (62%)

Query:   187 KLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKE 246
             KLF+ GL+  T+EK L A F  +G +VEV ++ D+ + +S+G+AF+ + +   A  A +E
Sbjct:     9 KLFIGGLNTETNEKALEAVFCKYGRVVEVLLMKDRETNKSRGFAFVTFESPADAKDAARE 68

Query:   247 MNGKIINGWMIVVDVAKTTPKYS----RGRP 273
             +NGK ++G  I V+ A T P +S    RG P
Sbjct:    69 LNGKALDGKPIKVEQA-TKPSFSTPSRRGPP 98


>UNIPROTKB|A9UMT9 [details] [associations]
            symbol:LOC100135403 "LOC100135403 protein" species:8364
            "Xenopus (Silurana) tropicalis" [GO:0000381 "regulation of
            alternative mRNA splicing, via spliceosome" evidence=ISS]
            [GO:0001047 "core promoter binding" evidence=ISS] [GO:0003682
            "chromatin binding" evidence=ISS] [GO:0003723 "RNA binding"
            evidence=ISS] [GO:0003729 "mRNA binding" evidence=ISS] [GO:0005634
            "nucleus" evidence=ISS] [GO:0005719 "nuclear euchromatin"
            evidence=ISS] [GO:0006366 "transcription from RNA polymerase II
            promoter" evidence=ISS] [GO:0006509 "membrane protein ectodomain
            proteolysis" evidence=ISS] [GO:0044530 "supraspliceosomal complex"
            evidence=ISS] [GO:0045944 "positive regulation of transcription
            from RNA polymerase II promoter" evidence=ISS] [GO:0048025
            "negative regulation of mRNA splicing, via spliceosome"
            evidence=ISS] [GO:0048026 "positive regulation of mRNA splicing,
            via spliceosome" evidence=ISS] [GO:0051260 "protein
            homooligomerization" evidence=ISS] [GO:0070062 "extracellular
            vesicular exosome" evidence=ISS] [GO:0071013 "catalytic step 2
            spliceosome" evidence=ISS] [GO:0071347 "cellular response to
            interleukin-1" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
            GO:GO:0070062 GO:GO:0051260 GO:GO:0003729 Gene3D:3.30.70.330
            GO:GO:0045944 GO:GO:0003682 GO:GO:0006366 GO:GO:0006509
            GO:GO:0001047 GO:GO:0005719 GO:GO:0071347 GO:GO:0071013
            GO:GO:0048025 eggNOG:COG0724 GO:GO:0048026 GO:GO:0000381
            GO:GO:0044530 HOVERGEN:HBG063314 InterPro:IPR012604 Pfam:PF08081
            EMBL:BC157792 UniGene:Str.67350 ProteinModelPortal:A9UMT9
            STRING:A9UMT9 Uniprot:A9UMT9
        Length = 375

 Score = 158 (60.7 bits), Expect = 3.8e-09, P = 3.8e-09
 Identities = 36/91 (39%), Positives = 57/91 (62%)

Query:   187 KLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKE 246
             KLF+ GL+  T+EK L A F  +G +VEV ++ D+ + +S+G+AF+ + +   A  A +E
Sbjct:     9 KLFIGGLNTETNEKALEAVFCKYGRVVEVLLMKDRETNKSRGFAFVTFESPADAKDAARE 68

Query:   247 MNGKIINGWMIVVDVAKTTPKYS----RGRP 273
             +NGK ++G  I V+ A T P +S    RG P
Sbjct:    69 LNGKALDGKPIKVEQA-TKPSFSAPSRRGPP 98


>TAIR|locus:2083348 [details] [associations]
            symbol:MORF3 "multiple organellar RNA editing factor 3"
            species:3702 "Arabidopsis thaliana" [GO:0009507 "chloroplast"
            evidence=ISM] [GO:0005739 "mitochondrion" evidence=IDA] [GO:0050897
            "cobalt ion binding" evidence=IDA] [GO:1900864 "mitochondrial RNA
            modification" evidence=IMP] GO:GO:0005739 EMBL:CP002686
            GenomeReviews:BA000014_GR GO:GO:0050897 EMBL:AC023912
            HOGENOM:HOG000272676 GO:GO:1900864 UniGene:At.18838
            UniGene:At.74889 IPI:IPI00530723 RefSeq:NP_187335.1 STRING:Q9M7Y5
            PRIDE:Q9M7Y5 EnsemblPlants:AT3G06790.1 GeneID:819864
            KEGG:ath:AT3G06790 TAIR:At3g06790 InParanoid:Q9M7Y5
            ProtClustDB:CLSN2684671 Genevestigator:Q9M7Y5 Uniprot:Q9M7Y5
        Length = 244

 Score = 152 (58.6 bits), Expect = 4.3e-09, P = 4.3e-09
 Identities = 44/156 (28%), Positives = 78/156 (50%)

Query:    18 VDEETSRELARLPGVLTVRPDPDYNSVKKDYSCLDIQMSNPWNSQIGTTLLFPLGTTKHW 77
             +++ +S   +  P  ++ RP    +     YS L+    N  N     T+L      +HW
Sbjct:    42 IEKVSSSRTSLGPCYISTRPKTSGSG----YSPLNDPSPNWSNRPPKETILLDGCDYEHW 97

Query:    78 LVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIYHVSWQSNFGFCCELDDECAQ 137
             L+ M+       T+ +M++ Y + LT VLG +++A+  IY V   +  GF   + +E + 
Sbjct:    98 LIVMEFTDPKP-TEEEMINSYVKTLTSVLGWQEEAKKKIYSVCTSTYTGFGALISEELSC 156

Query:   138 ELTGVPGVLSVQPDENFGSENKDYGGN-NLQNSMVP 172
             ++  +PGVL V PD      NKDYGG+  ++  ++P
Sbjct:   157 KVKALPGVLWVLPDSYLDVPNKDYGGDLYVEGKVIP 192


>UNIPROTKB|B7ZMD9 [details] [associations]
            symbol:RBMY1D "RNA-binding motif protein, Y chromosome,
            family 1 member D" species:9606 "Homo sapiens" [GO:0000166
            "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
            binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 HOVERGEN:HBG063314
            InterPro:IPR012604 Pfam:PF08081 UniGene:Hs.380450 EMBL:AC007322
            HGNC:HGNC:23915 EMBL:BC136862 EMBL:BC144459 IPI:IPI00945061
            SMR:B7ZMD9 Ensembl:ENST00000418956 UCSC:uc010nxb.2 Uniprot:B7ZMD9
        Length = 459

 Score = 159 (61.0 bits), Expect = 4.4e-09, P = 4.4e-09
 Identities = 39/88 (44%), Positives = 53/88 (60%)

Query:   187 KLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKE 246
             KLF+ GL+  T+EK L+A F   G + EV +I D+ SK S+G+AFI +     A  A K+
Sbjct:     9 KLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSK-SRGFAFITFENPADAKNAAKD 67

Query:   247 MNGKIINGWMIVVDVAKTTPKYSRGRPR 274
             MNGK ++G  I V+ AK     S GR R
Sbjct:    68 MNGKSLHGKAIKVEQAKKPSFQSGGRRR 95


>UNIPROTKB|J3KPK3 [details] [associations]
            symbol:RBMY1E "RNA-binding motif protein, Y chromosome,
            family 1 member E" species:9606 "Homo sapiens" [GO:0000166
            "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
            binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR012604 Pfam:PF08081
            EMBL:AC007322 HGNC:HGNC:23916 ProteinModelPortal:J3KPK3
            Ensembl:ENST00000382658 Uniprot:J3KPK3
        Length = 459

 Score = 159 (61.0 bits), Expect = 4.4e-09, P = 4.4e-09
 Identities = 39/88 (44%), Positives = 53/88 (60%)

Query:   187 KLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKE 246
             KLF+ GL+  T+EK L+A F   G + EV +I D+ SK S+G+AFI +     A  A K+
Sbjct:     9 KLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSK-SRGFAFITFENPADAKNAAKD 67

Query:   247 MNGKIINGWMIVVDVAKTTPKYSRGRPR 274
             MNGK ++G  I V+ AK     S GR R
Sbjct:    68 MNGKSLHGKAIKVEQAKKPSFQSGGRRR 95


>UNIPROTKB|K7GQ39 [details] [associations]
            symbol:RBMX "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            Gene3D:3.30.70.330 GeneTree:ENSGT00700000104336 EMBL:FP102148
            Ensembl:ENSSSCT00000033155 Uniprot:K7GQ39
        Length = 101

 Score = 138 (53.6 bits), Expect = 4.5e-09, P = 4.5e-09
 Identities = 26/64 (40%), Positives = 43/64 (67%)

Query:   187 KLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKE 246
             KLF+ GL+  T+EK L A F  +G +VEV ++ D+ + +S+G+AF+ + +   A  A ++
Sbjct:    11 KLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARD 70

Query:   247 MNGK 250
             MNGK
Sbjct:    71 MNGK 74


>UNIPROTKB|K7GKR9 [details] [associations]
            symbol:RBMX "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            Gene3D:3.30.70.330 GeneTree:ENSGT00700000104336 EMBL:FP102148
            Ensembl:ENSSSCT00000035101 Uniprot:K7GKR9
        Length = 196

 Score = 142 (55.0 bits), Expect = 4.8e-09, P = 4.8e-09
 Identities = 26/66 (39%), Positives = 45/66 (68%)

Query:   187 KLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKE 246
             KLF+ GL+  T+EK L A F  +G +VEV ++ D+ + +S+G+AF+ + +   A  A ++
Sbjct:     9 KLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARD 68

Query:   247 MNGKII 252
             MNGK++
Sbjct:    69 MNGKLL 74


>UNIPROTKB|A6NDE4 [details] [associations]
            symbol:RBMY1B "RNA-binding motif protein, Y chromosome,
            family 1 member B" species:9606 "Homo sapiens" [GO:0000166
            "nucleotide binding" evidence=IEA] [GO:0006397 "mRNA processing"
            evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
            [GO:0008380 "RNA splicing" evidence=IDA] [GO:0007283
            "spermatogenesis" evidence=TAS] [GO:0003723 "RNA binding"
            evidence=NAS] [GO:0008584 "male gonad development" evidence=IMP]
            [GO:0005634 "nucleus" evidence=TAS] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0005634 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
            Gene3D:3.30.70.330 GO:GO:0007283 GO:GO:0003723 GO:GO:0008584
            HOGENOM:HOG000276235 HOVERGEN:HBG063314 InterPro:IPR012604
            Pfam:PF08081 EMBL:AC010141 UniGene:Hs.380450 HPA:HPA001534
            IPI:IPI00479500 RefSeq:NP_001006121.1 UniGene:Hs.725744
            ProteinModelPortal:A6NDE4 SMR:A6NDE4 STRING:A6NDE4 PaxDb:A6NDE4
            PRIDE:A6NDE4 Ensembl:ENST00000383020 GeneID:378948 KEGG:hsa:378948
            UCSC:uc004fup.4 CTD:378948 GeneCards:GC0YP023674 HGNC:HGNC:23914
            neXtProt:NX_A6NDE4 PharmGKB:PA134872137 eggNOG:NOG140744
            InParanoid:A6NDE4 OMA:PRDYAYC OrthoDB:EOG4TF0N7 GenomeRNAi:378948
            NextBio:100871 ArrayExpress:A6NDE4 Bgee:A6NDE4 CleanEx:HS_RBMY1B
            Genevestigator:A6NDE4 Uniprot:A6NDE4
        Length = 496

 Score = 159 (61.0 bits), Expect = 5.1e-09, P = 5.1e-09
 Identities = 39/88 (44%), Positives = 53/88 (60%)

Query:   187 KLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKE 246
             KLF+ GL+  T+EK L+A F   G + EV +I D+ SK S+G+AFI +     A  A K+
Sbjct:     9 KLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSK-SRGFAFITFENPADAKNAAKD 67

Query:   247 MNGKIINGWMIVVDVAKTTPKYSRGRPR 274
             MNGK ++G  I V+ AK     S GR R
Sbjct:    68 MNGKSLHGKAIKVEQAKKPSFQSGGRRR 95


>UNIPROTKB|A6NEQ0 [details] [associations]
            symbol:RBMY1E "RNA-binding motif protein, Y chromosome,
            family 1 member E" species:9606 "Homo sapiens" [GO:0000166
            "nucleotide binding" evidence=IEA] [GO:0003723 "RNA binding"
            evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
            [GO:0008380 "RNA splicing" evidence=IEA] [GO:0005634 "nucleus"
            evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0008380
            GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
            HOGENOM:HOG000276235 HOVERGEN:HBG063314 InterPro:IPR012604
            Pfam:PF08081 HPA:HPA001534 UniGene:Hs.725744 OrthoDB:EOG4TF0N7
            EMBL:AC007322 IPI:IPI00472030 RefSeq:NP_001006118.2
            ProteinModelPortal:A6NEQ0 SMR:A6NEQ0 STRING:A6NEQ0
            PhosphoSite:A6NEQ0 PRIDE:A6NEQ0 DNASU:378950
            Ensembl:ENST00000382659 GeneID:378950 KEGG:hsa:378950
            UCSC:uc004fux.4 CTD:378950 GeneCards:GC0YM024027 HGNC:HGNC:23916
            neXtProt:NX_A6NEQ0 PharmGKB:PA134905273 OMA:PYCDREH
            GenomeRNAi:378950 NextBio:100879 ArrayExpress:A6NEQ0 Bgee:A6NEQ0
            Genevestigator:A6NEQ0 Uniprot:A6NEQ0
        Length = 496

 Score = 159 (61.0 bits), Expect = 5.1e-09, P = 5.1e-09
 Identities = 39/88 (44%), Positives = 53/88 (60%)

Query:   187 KLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKE 246
             KLF+ GL+  T+EK L+A F   G + EV +I D+ SK S+G+AFI +     A  A K+
Sbjct:     9 KLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSK-SRGFAFITFENPADAKNAAKD 67

Query:   247 MNGKIINGWMIVVDVAKTTPKYSRGRPR 274
             MNGK ++G  I V+ AK     S GR R
Sbjct:    68 MNGKSLHGKAIKVEQAKKPSFQSGGRRR 95


>UNIPROTKB|P0C7P1 [details] [associations]
            symbol:RBMY1D "RNA-binding motif protein, Y chromosome,
            family 1 member D" species:9606 "Homo sapiens" [GO:0000166
            "nucleotide binding" evidence=IEA] [GO:0003723 "RNA binding"
            evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
            [GO:0008380 "RNA splicing" evidence=IEA] [GO:0005634 "nucleus"
            evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0008380
            GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
            HOGENOM:HOG000276235 HOVERGEN:HBG063314 InterPro:IPR012604
            Pfam:PF08081 UniGene:Hs.380450 HPA:HPA001534 OrthoDB:EOG4TF0N7
            EMBL:AC007322 IPI:IPI00215689 RefSeq:NP_001006120.2
            ProteinModelPortal:P0C7P1 SMR:P0C7P1 PhosphoSite:P0C7P1
            DMDM:190360153 PRIDE:P0C7P1 Ensembl:ENST00000382677
            Ensembl:ENST00000382680 GeneID:378949 KEGG:hsa:378949
            UCSC:uc004fuo.4 CTD:378949 GeneCards:GC0YM024026 HGNC:HGNC:23915
            neXtProt:NX_P0C7P1 PharmGKB:PA134863616 InParanoid:P0C7P1
            OMA:FIGGFNR GenomeRNAi:378949 NextBio:100875 ArrayExpress:P0C7P1
            Bgee:P0C7P1 Genevestigator:P0C7P1 Uniprot:P0C7P1
        Length = 496

 Score = 159 (61.0 bits), Expect = 5.1e-09, P = 5.1e-09
 Identities = 39/88 (44%), Positives = 53/88 (60%)

Query:   187 KLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKE 246
             KLF+ GL+  T+EK L+A F   G + EV +I D+ SK S+G+AFI +     A  A K+
Sbjct:     9 KLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSK-SRGFAFITFENPADAKNAAKD 67

Query:   247 MNGKIINGWMIVVDVAKTTPKYSRGRPR 274
             MNGK ++G  I V+ AK     S GR R
Sbjct:    68 MNGKSLHGKAIKVEQAKKPSFQSGGRRR 95


>UNIPROTKB|P0DJD3 [details] [associations]
            symbol:RBMY1A1 "RNA-binding motif protein, Y chromosome,
            family 1 member A1" species:9606 "Homo sapiens" [GO:0000166
            "nucleotide binding" evidence=IEA] [GO:0006397 "mRNA processing"
            evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0005634
            "nucleus" evidence=IEA] [GO:0000381 "regulation of alternative mRNA
            splicing, via spliceosome" evidence=IDA] [GO:0003729 "mRNA binding"
            evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0005634 GO:GO:0008380 GO:GO:0000166
            GO:GO:0003729 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0000381
            InterPro:IPR012604 Pfam:PF08081 EMBL:X76059 EMBL:BC047768
            EMBL:BC070298 EMBL:AC010141 IPI:IPI00332760 IPI:IPI00872545
            IPI:IPI00872656 PIR:A49418 RefSeq:NP_005049.1 UniGene:Hs.380450
            PDB:2FY1 PDBsum:2FY1 ProteinModelPortal:P0DJD3 SMR:P0DJD3
            DMDM:27805716 PRIDE:P0DJD3 Ensembl:ENST00000303902
            Ensembl:ENST00000382707 GeneID:5940 KEGG:hsa:5940 CTD:5940
            GeneCards:GC0YP023675 HGNC:HGNC:9912 HPA:HPA001534 MIM:400006
            neXtProt:NX_P0DJD3 OMA:PREYASE PhylomeDB:P0DJD3 GenomeRNAi:5940
            Bgee:P0DJD3 CleanEx:HS_RBMY1A1 GermOnline:ENSG00000174622
            Uniprot:P0DJD3
        Length = 496

 Score = 159 (61.0 bits), Expect = 5.1e-09, P = 5.1e-09
 Identities = 39/88 (44%), Positives = 53/88 (60%)

Query:   187 KLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKE 246
             KLF+ GL+  T+EK L+A F   G + EV +I D+ SK S+G+AFI +     A  A K+
Sbjct:     9 KLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSK-SRGFAFITFENPADAKNAAKD 67

Query:   247 MNGKIINGWMIVVDVAKTTPKYSRGRPR 274
             MNGK ++G  I V+ AK     S GR R
Sbjct:    68 MNGKSLHGKAIKVEQAKKPSFQSGGRRR 95


>UNIPROTKB|Q3ZCE8 [details] [associations]
            symbol:RBM8A "RNA-binding protein 8A" species:9913 "Bos
            taurus" [GO:0016607 "nuclear speck" evidence=IEA] [GO:0005737
            "cytoplasm" evidence=IEA] [GO:0071013 "catalytic step 2
            spliceosome" evidence=IEA] [GO:0035145 "exon-exon junction complex"
            evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
            process, nonsense-mediated decay" evidence=IEA] [GO:0051028 "mRNA
            transport" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
            [GO:0006417 "regulation of translation" evidence=IEA] [GO:0006397
            "mRNA processing" evidence=IEA] [GO:0003723 "RNA binding"
            evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR008111 InterPro:IPR012677
            Pfam:PF00076 PRINTS:PR01738 PROSITE:PS50102 SMART:SM00360
            GO:GO:0005737 GO:GO:0006417 GO:GO:0000184 GO:GO:0008380
            GO:GO:0000166 GO:GO:0016607 GO:GO:0006397 Gene3D:3.30.70.330
            GO:GO:0003723 GO:GO:0051028 GO:GO:0071013 eggNOG:COG0724
            GO:GO:0035145 GeneTree:ENSGT00550000074641 HSSP:P52298
            EMBL:BT025376 EMBL:BC102484 IPI:IPI00705285 IPI:IPI00939094
            RefSeq:NP_001030401.1 UniGene:Bt.49450 ProteinModelPortal:Q3ZCE8
            SMR:Q3ZCE8 STRING:Q3ZCE8 PRIDE:Q3ZCE8 Ensembl:ENSBTAT00000011016
            GeneID:518045 KEGG:bta:518045 CTD:9939 HOGENOM:HOG000183826
            HOVERGEN:HBG055173 InParanoid:Q3ZCE8 KO:K12876 OMA:WILFVTS
            OrthoDB:EOG42822W NextBio:20872569 Uniprot:Q3ZCE8
        Length = 174

 Score = 137 (53.3 bits), Expect = 5.9e-09, P = 5.9e-09
 Identities = 39/126 (30%), Positives = 61/126 (48%)

Query:   154 FGSENKDYGGNNLQNSMVPSDSSEASPTQ-IKTKKLFVTGLSFYTSEKTLRAAFEGFGEL 212
             FGSE             V  D  E  P + ++   LFVTG+    +E+ +   F  +GE+
Sbjct:    40 FGSEEGSRARMREDYDSVEQDGDEPGPQRSVEGWILFVTGVHEEATEEDIHDKFAEYGEI 99

Query:   213 VEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVD--VAKTTPKYSR 270
               + + +D+ +   KGY  +EY T + A AA++ +NG+ + G  I VD    +  PK  R
Sbjct:   100 KNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWCFVRGPPKGKR 159

Query:   271 --GRPR 274
               GR R
Sbjct:   160 RGGRRR 165


>UNIPROTKB|E2QV85 [details] [associations]
            symbol:RBM8A "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0071013 "catalytic step 2 spliceosome"
            evidence=IEA] [GO:0035145 "exon-exon junction complex"
            evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
            process, nonsense-mediated decay" evidence=IEA] [GO:0006396 "RNA
            processing" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
            binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR008111
            InterPro:IPR012677 Pfam:PF00076 PRINTS:PR01738 PROSITE:PS50102
            SMART:SM00360 GO:GO:0005737 GO:GO:0000184 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0006396 GO:GO:0071013
            GO:GO:0035145 ProteinModelPortal:E2QV85 Ensembl:ENSCAFT00000017835
            Uniprot:E2QV85
        Length = 177

 Score = 137 (53.3 bits), Expect = 5.9e-09, P = 5.9e-09
 Identities = 39/126 (30%), Positives = 61/126 (48%)

Query:   154 FGSENKDYGGNNLQNSMVPSDSSEASPTQ-IKTKKLFVTGLSFYTSEKTLRAAFEGFGEL 212
             FGSE             V  D  E  P + ++   LFVTG+    +E+ +   F  +GE+
Sbjct:    43 FGSEEGSRARMREDYDSVEQDGDEPGPQRSVEGWILFVTGVHEEATEEDIHDKFAEYGEI 102

Query:   213 VEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVD--VAKTTPKYSR 270
               + + +D+ +   KGY  +EY T + A AA++ +NG+ + G  I VD    +  PK  R
Sbjct:   103 KNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWCFVRGPPKGKR 162

Query:   271 --GRPR 274
               GR R
Sbjct:   163 RGGRRR 168


>UNIPROTKB|F6XAE9 [details] [associations]
            symbol:RBM8A "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0006396 "RNA processing" evidence=IEA]
            [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634 "nucleus"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
            "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR008111 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR01738
            PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0005737
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0006396
            GeneTree:ENSGT00550000074641 CTD:9939 KO:K12876 OMA:WILFVTS
            Ensembl:ENSCAFT00000017835 EMBL:AAEX03011037 RefSeq:XP_533035.1
            ProteinModelPortal:F6XAE9 GeneID:475827 KEGG:cfa:475827
            Uniprot:F6XAE9
        Length = 174

 Score = 137 (53.3 bits), Expect = 5.9e-09, P = 5.9e-09
 Identities = 39/126 (30%), Positives = 61/126 (48%)

Query:   154 FGSENKDYGGNNLQNSMVPSDSSEASPTQ-IKTKKLFVTGLSFYTSEKTLRAAFEGFGEL 212
             FGSE             V  D  E  P + ++   LFVTG+    +E+ +   F  +GE+
Sbjct:    40 FGSEEGSRARMREDYDSVEQDGDEPGPQRSVEGWILFVTGVHEEATEEDIHDKFAEYGEI 99

Query:   213 VEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVD--VAKTTPKYSR 270
               + + +D+ +   KGY  +EY T + A AA++ +NG+ + G  I VD    +  PK  R
Sbjct:   100 KNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWCFVRGPPKGKR 159

Query:   271 --GRPR 274
               GR R
Sbjct:   160 RGGRRR 165


>UNIPROTKB|Q9Y5S9 [details] [associations]
            symbol:RBM8A "RNA-binding protein 8A" species:9606 "Homo
            sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0006417
            "regulation of translation" evidence=IEA] [GO:0016607 "nuclear
            speck" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA;NAS]
            [GO:0005737 "cytoplasm" evidence=NAS] [GO:0003729 "mRNA binding"
            evidence=NAS] [GO:0003723 "RNA binding" evidence=NAS] [GO:0005515
            "protein binding" evidence=IPI] [GO:0035145 "exon-exon junction
            complex" evidence=IDA] [GO:0000398 "mRNA splicing, via spliceosome"
            evidence=IC;TAS] [GO:0071013 "catalytic step 2 spliceosome"
            evidence=IDA] [GO:0000184 "nuclear-transcribed mRNA catabolic
            process, nonsense-mediated decay" evidence=IMP;TAS] [GO:0005654
            "nucleoplasm" evidence=TAS] [GO:0005829 "cytosol" evidence=TAS]
            [GO:0006366 "transcription from RNA polymerase II promoter"
            evidence=TAS] [GO:0006369 "termination of RNA polymerase II
            transcription" evidence=TAS] [GO:0006406 "mRNA export from nucleus"
            evidence=TAS] [GO:0008380 "RNA splicing" evidence=TAS] [GO:0010467
            "gene expression" evidence=TAS] [GO:0016070 "RNA metabolic process"
            evidence=TAS] [GO:0016071 "mRNA metabolic process" evidence=TAS]
            [GO:0031124 "mRNA 3'-end processing" evidence=TAS] [GO:0005730
            "nucleolus" evidence=IDA] Reactome:REACT_71 Reactome:REACT_21257
            InterPro:IPR000504 InterPro:IPR008111 InterPro:IPR012677
            Pfam:PF00076 PRINTS:PR01738 PROSITE:PS50102 SMART:SM00360
            GO:GO:0005829 GO:GO:0005654 GO:GO:0006417 GO:GO:0000184
            GO:GO:0000166 GO:GO:0016607 Reactome:REACT_1675 GO:GO:0003729
            Gene3D:3.30.70.330 TCDB:3.A.18.1.1 GO:GO:0006406 EMBL:AL160282
            GO:GO:0000398 GO:GO:0071013 Reactome:REACT_1788 eggNOG:COG0724
            GO:GO:0035145 PDB:2HYI PDB:2J0Q PDB:2J0S PDB:2XB2 PDB:3EX7
            PDBsum:2HYI PDBsum:2J0Q PDBsum:2J0S PDBsum:2XB2 PDBsum:3EX7
            GO:GO:0006369 GO:GO:0031124 Reactome:REACT_78 EMBL:CH471244
            PDB:1P27 PDBsum:1P27 CTD:9939 HOGENOM:HOG000183826
            HOVERGEN:HBG055173 KO:K12876 OMA:WILFVTS OrthoDB:EOG42822W
            EMBL:AF127761 EMBL:AF198620 EMBL:AF231511 EMBL:AF231512
            EMBL:AF299118 EMBL:AF403012 EMBL:AF182415 EMBL:AF161463
            EMBL:CR541823 EMBL:CR541805 EMBL:AK075009 EMBL:BC017088
            IPI:IPI00001757 IPI:IPI00216659 RefSeq:NP_005096.1
            RefSeq:XP_003960226.1 UniGene:Hs.591455 ProteinModelPortal:Q9Y5S9
            SMR:Q9Y5S9 DIP:DIP-33070N IntAct:Q9Y5S9 MINT:MINT-265248
            STRING:Q9Y5S9 PhosphoSite:Q9Y5S9 DMDM:10720244 PaxDb:Q9Y5S9
            PRIDE:Q9Y5S9 DNASU:9939 Ensembl:ENST00000330165
            Ensembl:ENST00000369307 Ensembl:ENST00000578414
            Ensembl:ENST00000583313 GeneID:101060541 GeneID:9939
            KEGG:hsa:101060541 KEGG:hsa:9939 UCSC:uc001ent.2 UCSC:uc001enu.2
            GeneCards:GC01P145507 HGNC:HGNC:9905 HPA:CAB012803 HPA:HPA018403
            MIM:605313 neXtProt:NX_Q9Y5S9 Orphanet:3320 PharmGKB:PA34270
            InParanoid:Q9Y5S9 PhylomeDB:Q9Y5S9 ChiTaRS:RBM8A
            EvolutionaryTrace:Q9Y5S9 GenomeRNAi:9939 NextBio:37498
            PMAP-CutDB:Q9Y5S9 Bgee:Q9Y5S9 CleanEx:HS_RBM8A
            Genevestigator:Q9Y5S9 GermOnline:ENSG00000131795 Uniprot:Q9Y5S9
        Length = 174

 Score = 137 (53.3 bits), Expect = 5.9e-09, P = 5.9e-09
 Identities = 39/126 (30%), Positives = 61/126 (48%)

Query:   154 FGSENKDYGGNNLQNSMVPSDSSEASPTQ-IKTKKLFVTGLSFYTSEKTLRAAFEGFGEL 212
             FGSE             V  D  E  P + ++   LFVTG+    +E+ +   F  +GE+
Sbjct:    40 FGSEEGSRARMREDYDSVEQDGDEPGPQRSVEGWILFVTGVHEEATEEDIHDKFAEYGEI 99

Query:   213 VEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVD--VAKTTPKYSR 270
               + + +D+ +   KGY  +EY T + A AA++ +NG+ + G  I VD    +  PK  R
Sbjct:   100 KNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWCFVRGPPKGKR 159

Query:   271 --GRPR 274
               GR R
Sbjct:   160 RGGRRR 165


>UNIPROTKB|I3LI59 [details] [associations]
            symbol:RBM8A "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
            [GO:0035145 "exon-exon junction complex" evidence=IEA] [GO:0000184
            "nuclear-transcribed mRNA catabolic process, nonsense-mediated
            decay" evidence=IEA] [GO:0006396 "RNA processing" evidence=IEA]
            [GO:0005737 "cytoplasm" evidence=IEA] [GO:0003723 "RNA binding"
            evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR008111 InterPro:IPR012677
            Pfam:PF00076 PRINTS:PR01738 PROSITE:PS50102 SMART:SM00360
            GO:GO:0005737 GO:GO:0000184 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003723 GO:GO:0006396 GO:GO:0071013 GO:GO:0035145
            GeneTree:ENSGT00550000074641 OMA:WILFVTS EMBL:CU606940
            Ensembl:ENSSSCT00000022923 Uniprot:I3LI59
        Length = 177

 Score = 137 (53.3 bits), Expect = 5.9e-09, P = 5.9e-09
 Identities = 39/126 (30%), Positives = 61/126 (48%)

Query:   154 FGSENKDYGGNNLQNSMVPSDSSEASPTQ-IKTKKLFVTGLSFYTSEKTLRAAFEGFGEL 212
             FGSE             V  D  E  P + ++   LFVTG+    +E+ +   F  +GE+
Sbjct:    43 FGSEEGSRARMREDYDSVEQDGDEPGPQRSVEGWILFVTGVHEEATEEDIHDKFAEYGEI 102

Query:   213 VEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVD--VAKTTPKYSR 270
               + + +D+ +   KGY  +EY T + A AA++ +NG+ + G  I VD    +  PK  R
Sbjct:   103 KNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWCFVRGPPKGKR 162

Query:   271 --GRPR 274
               GR R
Sbjct:   163 RGGRRR 168


>RGD|1310099 [details] [associations]
            symbol:Rbm8a "RNA binding motif protein 8A" species:10116
            "Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0000184 "nuclear-transcribed mRNA catabolic process,
            nonsense-mediated decay" evidence=IEA;ISO] [GO:0003723 "RNA
            binding" evidence=IEA] [GO:0003729 "mRNA binding" evidence=ISO]
            [GO:0005634 "nucleus" evidence=ISO] [GO:0005737 "cytoplasm"
            evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
            [GO:0006417 "regulation of translation" evidence=IEA] [GO:0008380
            "RNA splicing" evidence=IEA] [GO:0016607 "nuclear speck"
            evidence=IEA] [GO:0035145 "exon-exon junction complex"
            evidence=IEA;ISO] [GO:0051028 "mRNA transport" evidence=IEA]
            [GO:0071013 "catalytic step 2 spliceosome" evidence=IEA;ISO]
            [GO:0005730 "nucleolus" evidence=ISO] InterPro:IPR000504
            InterPro:IPR008111 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR01738
            PROSITE:PS50102 SMART:SM00360 RGD:1310099 GO:GO:0005737
            GO:GO:0006417 GO:GO:0000184 GO:GO:0008380 GO:GO:0000166
            GO:GO:0016607 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
            GO:GO:0051028 GO:GO:0071013 eggNOG:COG0724 GO:GO:0035145
            GeneTree:ENSGT00550000074641 CTD:9939 HOGENOM:HOG000183826
            KO:K12876 OMA:WILFVTS OrthoDB:EOG42822W EMBL:DQ359102
            IPI:IPI00210002 RefSeq:NP_001258067.1 RefSeq:XP_001059872.1
            UniGene:Rn.37716 ProteinModelPortal:Q27W01 SMR:Q27W01 STRING:Q27W01
            PhosphoSite:Q27W01 PRIDE:Q27W01 Ensembl:ENSRNOT00000028807
            GeneID:295284 KEGG:rno:295284 UCSC:RGD:1310099 InParanoid:Q27W01
            NextBio:639304 Genevestigator:Q27W01 Uniprot:Q27W01
        Length = 174

 Score = 137 (53.3 bits), Expect = 5.9e-09, P = 5.9e-09
 Identities = 39/126 (30%), Positives = 61/126 (48%)

Query:   154 FGSENKDYGGNNLQNSMVPSDSSEASPTQ-IKTKKLFVTGLSFYTSEKTLRAAFEGFGEL 212
             FGSE             V  D  E  P + ++   LFVTG+    +E+ +   F  +GE+
Sbjct:    40 FGSEEGSRARMREDYDSVEQDGDEPGPQRSVEGWILFVTGVHEEATEEDIHDKFAEYGEI 99

Query:   213 VEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVD--VAKTTPKYSR 270
               + + +D+ +   KGY  +EY T + A AA++ +NG+ + G  I VD    +  PK  R
Sbjct:   100 KNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWCFVRGPPKGKR 159

Query:   271 --GRPR 274
               GR R
Sbjct:   160 RGGRRR 165


>UNIPROTKB|G5E5V7 [details] [associations]
            symbol:G5E5V7 "Uncharacterized protein" species:9913 "Bos
            taurus" [GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
            [GO:0051170 "nuclear import" evidence=IEA] [GO:0051168 "nuclear
            export" evidence=IEA] [GO:0045111 "intermediate filament
            cytoskeleton" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
            [GO:0005730 "nucleolus" evidence=IEA] [GO:0005654 "nucleoplasm"
            evidence=IEA] [GO:0003697 "single-stranded DNA binding"
            evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            InterPro:IPR021662 Pfam:PF11627 GeneTree:ENSGT00550000074566
            EMBL:DAAA02007960 Ensembl:ENSBTAT00000036150 OMA:ANTMPIL
            Uniprot:G5E5V7
        Length = 319

 Score = 154 (59.3 bits), Expect = 7.6e-09, P = 7.6e-09
 Identities = 35/93 (37%), Positives = 61/93 (65%)

Query:   166 LQNSMVPSDSS-EASPTQIKT-KKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKIS 223
             L +S  P  S    SP +++  +KLF+ GLSF T++++LR+ FE +G L +  ++MD  +
Sbjct:     1 LNSSPPPLPSCLNQSPKELEQLRKLFIGGLSFETTDESLRSHFEQWGMLTDC-VVMDPNT 59

Query:   224 KRSKGYAFIEYTTEEAASAAL----KEMNGKII 252
             KRS+G+ F+ YTT E   AA+    ++M+G+++
Sbjct:    60 KRSRGFGFVTYTTVEEVDAAMNARPQKMDGRVV 92


>UNIPROTKB|E1C875 [details] [associations]
            symbol:TRA2A "Uncharacterized protein" species:9031 "Gallus
            gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
            "nucleic acid binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            GeneTree:ENSGT00700000104309 EMBL:AADN02000941 EMBL:AADN02000942
            IPI:IPI00681985 ProteinModelPortal:E1C875
            Ensembl:ENSGALT00000031186 Uniprot:E1C875
        Length = 182

 Score = 136 (52.9 bits), Expect = 7.6e-09, P = 7.6e-09
 Identities = 33/92 (35%), Positives = 51/92 (55%)

Query:   188 LFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEM 247
             L V GLS YT+E+ LR  F  +G L  V ++ D+ + RS+G+AF+ +   + +  A++  
Sbjct:    20 LGVFGLSLYTTERDLREVFSRYGPLTGVNVVYDQRTGRSRGFAFVYFERIDDSKEAMEHA 79

Query:   248 NGKIINGWMIVVDVAKT------TPKYSRGRP 273
             NG  ++G  I VD + T      TP    GRP
Sbjct:    80 NGMELDGRRIRVDYSITKRAHTPTPGIYMGRP 111


>CGD|CAL0003946 [details] [associations]
            symbol:orf19.1389 species:5476 "Candida albicans" [GO:0005737
            "cytoplasm" evidence=IEA] [GO:0016071 "mRNA metabolic process"
            evidence=IEA] [GO:0008143 "poly(A) RNA binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 CGD:CAL0003946 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003676 eggNOG:COG0724 EMBL:AACQ01000101 KO:K14396
            RefSeq:XP_714561.1 ProteinModelPortal:Q59YD7 GeneID:3643794
            KEGG:cal:CaO19.1389 Uniprot:Q59YD7
        Length = 163

 Score = 135 (52.6 bits), Expect = 1.0e-08, P = 1.0e-08
 Identities = 30/98 (30%), Positives = 51/98 (52%)

Query:   178 ASPTQIKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTE 237
             A   +I  + ++V  + + ++ + L   F G G +  V I+ D+ S   KGYA+IE+   
Sbjct:    20 AKQEEIDGRSVYVGNVDYQSTPEQLEEFFHGVGVIERVTILFDRFSGLPKGYAYIEFEQT 79

Query:   238 EAASAALKEMNGKIINGWMIVVDVAKTT-PKYSRGRPR 274
             E+   A+ E++GK   G  + V   +T  P + RGR R
Sbjct:    80 ESVQKAIDELHGKEFRGRELRVTAKRTNLPGFRRGRGR 117


>UNIPROTKB|F2Z2U1 [details] [associations]
            symbol:RBMY1A1 "RNA-binding motif protein, Y chromosome,
            family 1 member E" species:9606 "Homo sapiens" [GO:0000166
            "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
            binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC010141 HGNC:HGNC:9912
            HGNC:HGNC:23914 EMBL:AC007322 HGNC:HGNC:23915 HGNC:HGNC:23916
            IPI:IPI00916472 SMR:F2Z2U1 Ensembl:ENST00000358944
            Ensembl:ENST00000361046 Ensembl:ENST00000382639
            Ensembl:ENST00000382653 Uniprot:F2Z2U1
        Length = 81

 Score = 135 (52.6 bits), Expect = 1.0e-08, P = 1.0e-08
 Identities = 30/72 (41%), Positives = 46/72 (63%)

Query:   187 KLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKE 246
             KLF+ GL+  T+EK L+A F   G + EV +I D+ SK S+G+AFI +     A  A K+
Sbjct:     9 KLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSK-SRGFAFITFENPADAKNAAKD 67

Query:   247 MNGKIINGWMIV 258
             MNGK++   +++
Sbjct:    68 MNGKMMVDTLLI 79


>TAIR|locus:2055951 [details] [associations]
            symbol:AT2G22100 species:3702 "Arabidopsis thaliana"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
            acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
            [GO:0005575 "cellular_component" evidence=ND] [GO:0008150
            "biological_process" evidence=ND] [GO:0000398 "mRNA splicing, via
            spliceosome" evidence=RCA] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:CP002685
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC007232
            HSSP:Q14103 ProtClustDB:CLSN2914947 IPI:IPI00529413 PIR:A84609
            RefSeq:NP_565526.1 UniGene:At.39482 ProteinModelPortal:Q9SHZ5
            SMR:Q9SHZ5 EnsemblPlants:AT2G22100.1 GeneID:816745
            KEGG:ath:AT2G22100 TAIR:At2g22100 InParanoid:Q9SHZ5 OMA:VFESADR
            PhylomeDB:Q9SHZ5 ArrayExpress:Q9SHZ5 Genevestigator:Q9SHZ5
            Uniprot:Q9SHZ5
        Length = 382

 Score = 154 (59.3 bits), Expect = 1.2e-08, P = 1.2e-08
 Identities = 33/98 (33%), Positives = 56/98 (57%)

Query:   177 EASPTQIKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTT 236
             E++      + +FV GL + T+ + L+AAFE +GE+ E  ++MDK + R+KG+ F+ + T
Sbjct:   154 ESADRDSSQRNIFVRGLGWDTTHENLKAAFEVYGEITECSVVMDKDTGRAKGFGFVLFKT 213

Query:   237 EEAASAALKEMNGKIINGWMIVVDVAKTTPKYSRGRPR 274
              + A AALK    ++ N     V      P ++ G+PR
Sbjct:   214 RKGARAALKNPEKRMYNR---TVSCLPARP-FNSGKPR 247


>TAIR|locus:2086310 [details] [associations]
            symbol:RIP1 "RNA-editing factor interacting protein 1"
            species:3702 "Arabidopsis thaliana" [GO:0009507 "chloroplast"
            evidence=ISM;IDA] [GO:0005739 "mitochondrion" evidence=IDA]
            [GO:0005515 "protein binding" evidence=IPI] [GO:0050897 "cobalt ion
            binding" evidence=IDA] [GO:0009451 "RNA modification" evidence=IMP]
            [GO:0016554 "cytidine to uridine editing" evidence=IMP] [GO:0080156
            "mitochondrial mRNA modification" evidence=IMP] GO:GO:0005739
            GO:GO:0009507 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0016554
            GO:GO:0050897 EMBL:AP000370 GO:GO:0080156 EMBL:AF428427
            IPI:IPI00532410 RefSeq:NP_566496.1 UniGene:At.24349
            UniGene:At.67750 IntAct:Q9LKA5 STRING:Q9LKA5 PaxDb:Q9LKA5
            PRIDE:Q9LKA5 EnsemblPlants:AT3G15000.1 GeneID:820729
            KEGG:ath:AT3G15000 GeneFarm:775 TAIR:At3g15000 eggNOG:NOG243672
            HOGENOM:HOG000243016 InParanoid:Q9LKA5 OMA:GAPPQNN PhylomeDB:Q9LKA5
            ProtClustDB:CLSN2915005 Genevestigator:Q9LKA5 GermOnline:AT3G15000
            Uniprot:Q9LKA5
        Length = 395

 Score = 154 (59.3 bits), Expect = 1.3e-08, P = 1.3e-08
 Identities = 39/121 (32%), Positives = 63/121 (52%)

Query:    57 NP-W-NSQIGTTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQM 114
             NP W N     T+L      +HWLV ++ P  G  T+ +++D Y + L +++G+E +A+M
Sbjct:    78 NPNWSNRPPKETILLDGCDFEHWLVVVEPPQ-GEPTRDEIIDSYIKTLAQIVGSEDEARM 136

Query:   115 CIYHVSWQSNFGFCCELDDECAQELTGVPGVLSVQPDENFGSENKDYGGNN-LQNSMVPS 173
              IY VS +  + F   + ++ + +L  +  V  V PD      NKDYGG   +    VP 
Sbjct:   137 KIYSVSTRCYYAFGALVSEDLSHKLKELSNVRWVLPDSYLDVRNKDYGGEPFIDGKAVPY 196

Query:   174 D 174
             D
Sbjct:   197 D 197


>DICTYBASE|DDB_G0275027 [details] [associations]
            symbol:DDB_G0275027 "SRA stem-loop-interacting
            RNA-binding protein, mitochondrial" species:44689 "Dictyostelium
            discoideum" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0044351
            "macropinocytosis" evidence=RCA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            dictyBase:DDB_G0275027 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003676 EMBL:AAFI02000013 eggNOG:COG0724
            ProtClustDB:CLSZ2430003 RefSeq:XP_643856.1
            ProteinModelPortal:Q86I71 PRIDE:Q86I71 EnsemblProtists:DDB0167377
            GeneID:8619907 KEGG:ddi:DDB_G0275027 InParanoid:Q86I71 OMA:QFESKES
            Uniprot:Q86I71
        Length = 91

 Score = 134 (52.2 bits), Expect = 1.3e-08, P = 1.3e-08
 Identities = 26/85 (30%), Positives = 52/85 (61%)

Query:   187 KLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALK- 245
             K+FVT L +   ++ L+  F  FG + +  +++D+++KRSKG+ F+++ ++E+   A+  
Sbjct:     5 KIFVTRLPWSVCKEALKNHFSQFGNIKDCYVVLDRVTKRSKGFGFVQFESKESVQNAINS 64

Query:   246 --EMNG-KIINGWMIVVDVAKTTPK 267
               E+NG K++    +  D  + TPK
Sbjct:    65 DNEINGRKLVVNEALAKDFKENTPK 89


>UNIPROTKB|B4DQI6 [details] [associations]
            symbol:TRA2A "cDNA FLJ50614, highly similar to
            Transformer-2 protein homolog" species:9606 "Homo sapiens"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
            acid binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 HOVERGEN:HBG107480 IPI:IPI00220447
            UniGene:Hs.445652 HGNC:HGNC:16645 ChiTaRS:TRA2A EMBL:AC023105
            EMBL:AK298815 SMR:B4DQI6 STRING:B4DQI6 Ensembl:ENST00000392502
            Uniprot:B4DQI6
        Length = 180

 Score = 134 (52.2 bits), Expect = 1.3e-08, P = 1.3e-08
 Identities = 33/92 (35%), Positives = 51/92 (55%)

Query:   188 LFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEM 247
             L V GLS YT+E+ LR  F  +G L  V ++ D+ + RS+G+AF+ +   + +  A++  
Sbjct:    20 LGVFGLSLYTTERDLREVFSRYGPLSGVNVVYDQRTGRSRGFAFVYFERIDDSKEAMERA 79

Query:   248 NGKIINGWMIVVDVAKT------TPKYSRGRP 273
             NG  ++G  I VD + T      TP    GRP
Sbjct:    80 NGMELDGRRIRVDYSITKRAHTPTPGIYMGRP 111


>UNIPROTKB|B4DUA9 [details] [associations]
            symbol:TRA2A "Transformer-2 protein homolog alpha"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            HOVERGEN:HBG107480 UniGene:Hs.445652 HGNC:HGNC:16645 ChiTaRS:TRA2A
            EMBL:AC023105 EMBL:AK300565 EMBL:AK300741 IPI:IPI01014274
            SMR:B4DUA9 STRING:B4DUA9 Ensembl:ENST00000538367 Uniprot:B4DUA9
        Length = 181

 Score = 134 (52.2 bits), Expect = 1.3e-08, P = 1.3e-08
 Identities = 33/92 (35%), Positives = 51/92 (55%)

Query:   188 LFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEM 247
             L V GLS YT+E+ LR  F  +G L  V ++ D+ + RS+G+AF+ +   + +  A++  
Sbjct:    20 LGVFGLSLYTTERDLREVFSRYGPLSGVNVVYDQRTGRSRGFAFVYFERIDDSKEAMERA 79

Query:   248 NGKIINGWMIVVDVAKT------TPKYSRGRP 273
             NG  ++G  I VD + T      TP    GRP
Sbjct:    80 NGMELDGRRIRVDYSITKRAHTPTPGIYMGRP 111


>UNIPROTKB|P0DJD4 [details] [associations]
            symbol:RBMY1C "RNA-binding motif protein, Y chromosome,
            family 1 member C" species:9606 "Homo sapiens" [GO:0000166
            "nucleotide binding" evidence=IEA] [GO:0003723 "RNA binding"
            evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
            [GO:0008380 "RNA splicing" evidence=IEA] [GO:0005634 "nucleus"
            evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0008380
            GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
            InterPro:IPR012604 Pfam:PF08081 IPI:IPI00332760 IPI:IPI00872545
            IPI:IPI00872656 PIR:A49418 DMDM:27805716 HPA:HPA001534 MIM:400006
            CleanEx:HS_RBMY1A1 GermOnline:ENSG00000174622 EMBL:U36608
            EMBL:U36604 EMBL:U36605 EMBL:U36606 EMBL:U36607 EMBL:U36610
            EMBL:U36609 ProteinModelPortal:P0DJD4 SMR:P0DJD4 PRIDE:P0DJD4
            GeneCards:GC0YU900014 HGNC:HGNC:9914 neXtProt:NX_P0DJD4
            Uniprot:P0DJD4
        Length = 496

 Score = 155 (59.6 bits), Expect = 1.5e-08, P = 1.5e-08
 Identities = 38/88 (43%), Positives = 53/88 (60%)

Query:   187 KLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKE 246
             KLF+ GL+  T+EK L+A F   G + EV +I D+ SK S+G+AFI +     A  A K+
Sbjct:     9 KLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSK-SRGFAFITFENPADAKNAAKD 67

Query:   247 MNGKIINGWMIVVDVAKTTPKYSRGRPR 274
             MNGK ++G  I V+ A+     S GR R
Sbjct:    68 MNGKSLHGKAIKVEQAQKPSFQSGGRRR 95


>UNIPROTKB|Q8N7X1 [details] [associations]
            symbol:RBMXL3 "RNA-binding motif protein, X-linked-like-3"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
            EMBL:AL589786 EMBL:AK301904 EMBL:AK097568 IPI:IPI00167369
            RefSeq:NP_001138818.1 UniGene:Hs.376008 ProteinModelPortal:Q8N7X1
            SMR:Q8N7X1 PhosphoSite:Q8N7X1 PaxDb:Q8N7X1 PRIDE:Q8N7X1
            Ensembl:ENST00000424776 GeneID:139804 KEGG:hsa:139804
            UCSC:uc011mte.1 CTD:139804 GeneCards:GC0XP114423 HGNC:HGNC:26859
            neXtProt:NX_Q8N7X1 PharmGKB:PA164725338 eggNOG:NOG331461
            HOGENOM:HOG000112105 InParanoid:Q8N7X1 OMA:YEEYRGR
            OrthoDB:EOG4ZPDV2 GenomeRNAi:139804 NextBio:84044 Bgee:Q8N7X1
            CleanEx:HS_CXorf55 Genevestigator:Q8N7X1 Uniprot:Q8N7X1
        Length = 1067

 Score = 159 (61.0 bits), Expect = 1.5e-08, P = 1.5e-08
 Identities = 33/91 (36%), Positives = 57/91 (62%)

Query:   184 KTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAA 243
             + +KLF+ GL+  T EK L+A F  +G +++V ++ D+ + +S+G+AF+ + +   A AA
Sbjct:     6 RPEKLFIGGLNLKTDEKALKAEFGKYGHIIKVFLMKDRKTNKSRGFAFVTFESPADAKAA 65

Query:   244 LKEMNGKIINGWMIVV-DVAKTTPKYSRGRP 273
              ++MNGK ++G  I+V    K   K SR  P
Sbjct:    66 ARDMNGKYLDGKAIMVAQTIKPAFKSSRWVP 96


>UNIPROTKB|F1M5N1 [details] [associations]
            symbol:F1M5N1 "Uncharacterized protein" species:10116
            "Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00567689
            ProteinModelPortal:F1M5N1 Ensembl:ENSRNOT00000023344 Uniprot:F1M5N1
        Length = 207

 Score = 143 (55.4 bits), Expect = 1.6e-08, P = 1.6e-08
 Identities = 31/78 (39%), Positives = 49/78 (62%)

Query:   174 DSSEASPTQIKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIE 233
             DS E  P Q++  KLF+ GLSF T++++LR+ FE +G L +  ++ D  +KRS+G+ F+ 
Sbjct:     2 DSME--PEQVR--KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVT 57

Query:   234 YTTEEAASAALKEMNGKI 251
             Y T E   AA+     K+
Sbjct:    58 YATVEEVDAAMNARPHKV 75


>UNIPROTKB|Q60A61 [details] [associations]
            symbol:MCA1010 "RNA-binding protein" species:243233
            "Methylococcus capsulatus str. Bath" [GO:0008150
            "biological_process" evidence=ND] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AE017282
            GenomeReviews:AE017282_GR HOGENOM:HOG000276232 RefSeq:YP_113486.1
            ProteinModelPortal:Q60A61 GeneID:3102652 KEGG:mca:MCA1010
            PATRIC:22605822 OMA:LAFHSTE Uniprot:Q60A61
        Length = 95

 Score = 133 (51.9 bits), Expect = 1.7e-08, P = 1.7e-08
 Identities = 26/85 (30%), Positives = 51/85 (60%)

Query:   187 KLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKE 246
             KL+V  L++   +  L   F  +G +   +++MD+ + RS+G+ F+E  +++ A AA+  
Sbjct:     4 KLYVGNLNYRVGDADLERTFAAYGTVKSAQVVMDRATGRSRGFGFVEMGSDQEAQAAIAG 63

Query:   247 MNGKIINGWMIVVDVAKTTPKYSRG 271
             +NGK ++G  ++V+ A+  P   RG
Sbjct:    64 LNGKEMDGRNLMVNEAR--PPERRG 86


>UNIPROTKB|Q74DJ2 [details] [associations]
            symbol:GSU1324 "RNA-binding protein" species:243231
            "Geobacter sulfurreducens PCA" [GO:0008150 "biological_process"
            evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003676 EMBL:AE017180 GenomeReviews:AE017180_GR HSSP:P19339
            HOGENOM:HOG000276232 RefSeq:NP_952377.1 ProteinModelPortal:Q74DJ2
            GeneID:2685944 KEGG:gsu:GSU1324 PATRIC:22025425 OMA:HMSYEAT
            ProtClustDB:CLSK828302 BioCyc:GSUL243231:GH27-1311-MONOMER
            Uniprot:Q74DJ2
        Length = 107

 Score = 133 (51.9 bits), Expect = 1.7e-08, P = 1.7e-08
 Identities = 30/89 (33%), Positives = 49/89 (55%)

Query:   186 KKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALK 245
             K+L+V  +S+  +E  LR  F   G +  V II D  + RSKG  ++   TEE A  A++
Sbjct:     3 KELYVGHMSYEATEDDLRRLFSVAGTVTSVHIITDPETGRSKGCGYVRMLTEEEAKEAIE 62

Query:   246 EMNGKIINGWMIVVDVAKTTPKYSRGRPR 274
              ++G ++   +I V VA+   + +R  PR
Sbjct:    63 TLDGALLRNRVITVSVARPQKQATRPAPR 91


>TIGR_CMR|GSU_1324 [details] [associations]
            symbol:GSU_1324 "RNA-binding protein" species:243231
            "Geobacter sulfurreducens PCA" [GO:0003723 "RNA binding"
            evidence=ISS] [GO:0008150 "biological_process" evidence=ND]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            EMBL:AE017180 GenomeReviews:AE017180_GR HSSP:P19339
            HOGENOM:HOG000276232 RefSeq:NP_952377.1 ProteinModelPortal:Q74DJ2
            GeneID:2685944 KEGG:gsu:GSU1324 PATRIC:22025425 OMA:HMSYEAT
            ProtClustDB:CLSK828302 BioCyc:GSUL243231:GH27-1311-MONOMER
            Uniprot:Q74DJ2
        Length = 107

 Score = 133 (51.9 bits), Expect = 1.7e-08, P = 1.7e-08
 Identities = 30/89 (33%), Positives = 49/89 (55%)

Query:   186 KKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALK 245
             K+L+V  +S+  +E  LR  F   G +  V II D  + RSKG  ++   TEE A  A++
Sbjct:     3 KELYVGHMSYEATEDDLRRLFSVAGTVTSVHIITDPETGRSKGCGYVRMLTEEEAKEAIE 62

Query:   246 EMNGKIINGWMIVVDVAKTTPKYSRGRPR 274
              ++G ++   +I V VA+   + +R  PR
Sbjct:    63 TLDGALLRNRVITVSVARPQKQATRPAPR 91


>UNIPROTKB|Q9DDU8 [details] [associations]
            symbol:TRA2B "Uncharacterized protein" species:9031 "Gallus
            gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0000381
            "regulation of alternative mRNA splicing, via spliceosome"
            evidence=IEA] [GO:0000398 "mRNA splicing, via spliceosome"
            evidence=IEA] [GO:0003729 "mRNA binding" evidence=IEA] [GO:0005634
            "nucleus" evidence=IEA] [GO:0048026 "positive regulation of mRNA
            splicing, via spliceosome" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0005634 GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330
            GO:GO:0000398 HSSP:Q9V535 GO:GO:0048026 GO:GO:0000381
            HOGENOM:HOG000276232 GeneTree:ENSGT00700000104309 KO:K12897
            OrthoDB:EOG4BVRW2 CTD:6434 eggNOG:NOG297815 OMA:YDDREYY
            EMBL:AADN02024287 EMBL:AF282244 IPI:IPI00571265 RefSeq:NP_990009.1
            UniGene:Gga.4158 SMR:Q9DDU8 Ensembl:ENSGALT00000010555
            GeneID:395403 KEGG:gga:395403 InParanoid:Q9DDU8 NextBio:20815487
            Uniprot:Q9DDU8
        Length = 289

 Score = 150 (57.9 bits), Expect = 1.7e-08, P = 1.7e-08
 Identities = 36/92 (39%), Positives = 52/92 (56%)

Query:   188 LFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEM 247
             L V GLS YT+E+ LR  F  +G + +V I+ D+ S+RS+G+AF+ +   E A  A +  
Sbjct:   120 LGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVEDAKEAKERA 179

Query:   248 NGKIINGWMIVVDVAKT------TPKYSRGRP 273
             NG  ++G  I VD + T      TP    GRP
Sbjct:   180 NGMELDGRRIRVDFSITKRPHTPTPGIYMGRP 211


>TAIR|locus:2027438 [details] [associations]
            symbol:GR-RBP6 "glycine-rich RNA-binding protein 6"
            species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
            binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0005634
            "nucleus" evidence=ISM] [GO:0009651 "response to salt stress"
            evidence=IEP] [GO:0005768 "endosome" evidence=IDA] [GO:0005794
            "Golgi apparatus" evidence=IDA] [GO:0005802 "trans-Golgi network"
            evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 EMBL:CP002684 GO:GO:0005794
            GO:GO:0000166 GO:GO:0005768 Gene3D:3.30.70.330 GO:GO:0003676
            GO:GO:0005802 HSSP:P09651 EMBL:AC026238 EMBL:BT005999 EMBL:AK227482
            EMBL:AY085358 IPI:IPI00537929 PIR:A86320 RefSeq:NP_173298.1
            UniGene:At.356 UniGene:At.41785 ProteinModelPortal:Q9FZ84
            SMR:Q9FZ84 IntAct:Q9FZ84 PaxDb:Q8LEL7 PRIDE:Q9FZ84
            EnsemblPlants:AT1G18630.1 GeneID:838444 KEGG:ath:AT1G18630
            GeneFarm:3974 TAIR:At1g18630 eggNOG:NOG255734 InParanoid:Q9FZ84
            OMA:IFRQPRA PhylomeDB:Q9FZ84 ProtClustDB:CLSN2914186
            Genevestigator:Q9FZ84 Uniprot:Q9FZ84
        Length = 155

 Score = 132 (51.5 bits), Expect = 2.2e-08, P = 2.2e-08
 Identities = 28/76 (36%), Positives = 48/76 (63%)

Query:   187 KLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKE 246
             K+FV GLS  T  + L+ AF  FG++V+  +++D+ S  S+G+ F+ Y + E A+ A++ 
Sbjct:    37 KIFVGGLSPSTDVELLKEAFGSFGKIVDAVVVLDRESGLSRGFGFVTYDSIEVANNAMQA 96

Query:   247 MNGKIINGWMIVVDVA 262
             M  K ++G +I V  A
Sbjct:    97 MQNKELDGRIIGVHPA 112


>UNIPROTKB|J3KQ82 [details] [associations]
            symbol:RBMY1J "RNA-binding motif protein, Y chromosome,
            family 1 member F/J" species:9606 "Homo sapiens" [GO:0000166
            "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
            binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR012604 Pfam:PF08081
            EMBL:AC023342 EMBL:AC007320 HGNC:HGNC:23974 HGNC:HGNC:23917
            ProteinModelPortal:J3KQ82 Ensembl:ENST00000445779
            Ensembl:ENST00000454978 Uniprot:J3KQ82
        Length = 459

 Score = 153 (58.9 bits), Expect = 2.2e-08, P = 2.2e-08
 Identities = 38/88 (43%), Positives = 52/88 (59%)

Query:   187 KLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKE 246
             KLF+ GL+  T+EK L+A F   G + EV +I D+ SK S+G+AFI +     A  A K+
Sbjct:     9 KLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSK-SRGFAFITFENPADAKNAAKD 67

Query:   247 MNGKIINGWMIVVDVAKTTPKYSRGRPR 274
             MNG  ++G  I V+ AK     S GR R
Sbjct:    68 MNGTSLHGKAIKVEQAKKPSFQSGGRRR 95


>UNIPROTKB|D4A491 [details] [associations]
            symbol:D4A491 "Uncharacterized protein" species:10116
            "Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 OrthoDB:EOG4HQDKF
            IPI:IPI00560785 ProteinModelPortal:D4A491
            Ensembl:ENSRNOT00000046349 OMA:DNAMEAR Uniprot:D4A491
        Length = 239

 Score = 146 (56.5 bits), Expect = 2.3e-08, P = 2.3e-08
 Identities = 34/94 (36%), Positives = 55/94 (58%)

Query:   180 PTQIKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEA 239
             P Q++  KLF+ GLSF T++++LR+ FE +G L +  ++ D  +KRS+G+ F+ Y T E 
Sbjct:     3 PEQVR--KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEE 60

Query:   240 ASAALKEMNGKIINGWMIVVDVAKTTPKYSRGRP 273
               AA+     K+ NG   VV+  +   +    RP
Sbjct:    61 VDAAMNARPHKV-NGR--VVEPKRAVSREDSQRP 91


>UNIPROTKB|Q15415 [details] [associations]
            symbol:RBMY1F "RNA-binding motif protein, Y chromosome,
            family 1 member F/J" species:9606 "Homo sapiens" [GO:0000166
            "nucleotide binding" evidence=IEA] [GO:0006397 "mRNA processing"
            evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0005634
            "nucleus" evidence=IEA] [GO:0007283 "spermatogenesis" evidence=NAS]
            [GO:0003723 "RNA binding" evidence=NAS] [GO:0005575
            "cellular_component" evidence=ND] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0005634 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
            Gene3D:3.30.70.330 GO:GO:0007283 GO:GO:0003723 HOGENOM:HOG000276235
            HOVERGEN:HBG063314 InterPro:IPR012604 Pfam:PF08081 HPA:HPA001534
            MIM:400006 eggNOG:NOG140744 OrthoDB:EOG4TF0N7 EMBL:X76060
            EMBL:AK313597 EMBL:AC023342 EMBL:AC007320 EMBL:BC030018
            EMBL:BC152392 IPI:IPI00413949 IPI:IPI00879122 PIR:B49418
            RefSeq:NP_001006117.2 RefSeq:NP_689798.1 UniGene:Hs.567746
            HSSP:Q14011 ProteinModelPortal:Q15415 SMR:Q15415 STRING:Q15415
            PhosphoSite:Q15415 PaxDb:Q15415 PRIDE:Q15415 DNASU:159163
            DNASU:378951 Ensembl:ENST00000250831 Ensembl:ENST00000303766
            Ensembl:ENST00000414629 GeneID:159163 GeneID:378951 KEGG:hsa:159163
            KEGG:hsa:378951 UCSC:uc004fva.3 UCSC:uc010nxh.3 CTD:159163
            CTD:378951 GeneCards:GC0YM024314 GeneCards:GC0YP024456
            HGNC:HGNC:23974 HGNC:HGNC:23917 neXtProt:NX_Q15415
            PharmGKB:PA134946298 InParanoid:Q15415 OMA:KDMNGTS PhylomeDB:Q15415
            NextBio:87890 Bgee:Q15415 CleanEx:HS_RBMY1F Genevestigator:Q15415
            Uniprot:Q15415
        Length = 496

 Score = 153 (58.9 bits), Expect = 2.6e-08, P = 2.6e-08
 Identities = 38/88 (43%), Positives = 52/88 (59%)

Query:   187 KLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKE 246
             KLF+ GL+  T+EK L+A F   G + EV +I D+ SK S+G+AFI +     A  A K+
Sbjct:     9 KLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSK-SRGFAFITFENPADAKNAAKD 67

Query:   247 MNGKIINGWMIVVDVAKTTPKYSRGRPR 274
             MNG  ++G  I V+ AK     S GR R
Sbjct:    68 MNGTSLHGKAIKVEQAKKPSFQSGGRRR 95


>TAIR|locus:2047685 [details] [associations]
            symbol:AT2G19380 species:3702 "Arabidopsis thaliana"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
            acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
            [GO:0005622 "intracellular" evidence=IEA] [GO:0005634 "nucleus"
            evidence=ISM] [GO:0008270 "zinc ion binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR003604 InterPro:IPR012677
            InterPro:IPR015880 Pfam:PF00076 PROSITE:PS50102 SMART:SM00355
            SMART:SM00360 SMART:SM00451 EMBL:CP002685 GenomeReviews:CT485783_GR
            GO:GO:0000166 GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0003676
            GO:GO:0005622 EMBL:AC003058 eggNOG:NOG253936 InterPro:IPR014898
            Pfam:PF08790 HSSP:Q60900 IPI:IPI00545777 PIR:T01286
            RefSeq:NP_565450.1 UniGene:At.50083 ProteinModelPortal:O64571
            SMR:O64571 PRIDE:O64571 EnsemblPlants:AT2G19380.1 GeneID:816456
            KEGG:ath:AT2G19380 TAIR:At2g19380 HOGENOM:HOG000114996
            InParanoid:O64571 OMA:ESADRDI PhylomeDB:O64571
            ProtClustDB:CLSN2914947 ArrayExpress:O64571 Genevestigator:O64571
            Uniprot:O64571
        Length = 613

 Score = 154 (59.3 bits), Expect = 2.8e-08, P = 2.8e-08
 Identities = 30/90 (33%), Positives = 53/90 (58%)

Query:   177 EASPTQIKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTT 236
             E++   I  + +FV G  + T+++ L+ AFE +GE+ E  ++MDK + R KGY F+ + T
Sbjct:   399 ESADRDIAQRNIFVRGFGWDTTQENLKTAFESYGEIEECSVVMDKDTGRGKGYGFVMFKT 458

Query:   237 EEAASAALKEMNGKIINGWMIVVDVAKTTP 266
              + A  ALK    ++ N  ++V ++A   P
Sbjct:   459 RKGAREALKRPEKRMYNR-IVVCNLASEKP 487


>TAIR|locus:2122990 [details] [associations]
            symbol:AT4G19610 species:3702 "Arabidopsis thaliana"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
            acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
            [GO:0005634 "nucleus" evidence=ISM] [GO:0008150
            "biological_process" evidence=ND] [GO:0005730 "nucleolus"
            evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 EMBL:CP002687 GO:GO:0005730
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K14787
            OMA:VFREKNV IPI:IPI00517416 RefSeq:NP_193696.3 UniGene:At.50354
            ProteinModelPortal:F4JT92 SMR:F4JT92 PRIDE:F4JT92
            EnsemblPlants:AT4G19610.1 GeneID:827703 KEGG:ath:AT4G19610
            Uniprot:F4JT92
        Length = 816

 Score = 155 (59.6 bits), Expect = 3.2e-08, P = 3.2e-08
 Identities = 41/138 (29%), Positives = 69/138 (50%)

Query:   132 DDECAQELTGVPGVLSVQP---DENFGSENKDYGGNNLQ---NSMVPSDSSEASPTQIKT 185
             DD+   E  G    +   P   D   G   KD  G+ ++   +  V  +S   S   + T
Sbjct:   234 DDDGKAETDGQDADIRYFPIDGDVEAGGVGKDDDGDAMEVEGDGKVAQESKAVSDDVLDT 293

Query:   186 KKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALK 245
              +LFV  L +  +E+ L   F  FG++ EV +++DK +KRS+G A+I Y   E A+ A++
Sbjct:   294 GRLFVRNLPYTATEEELMEHFSTFGKISEVHLVLDKETKRSRGIAYILYLIPECAARAME 353

Query:   246 EMNGKIINGWMIVVDVAK 263
             E++     G ++ +  AK
Sbjct:   354 ELDNSSFQGRLLHILPAK 371


>GENEDB_PFALCIPARUM|PF13_0122 [details] [associations]
            symbol:PF13_0122 "cyclophilin, putative"
            species:5833 "Plasmodium falciparum" [GO:0003723 "RNA binding"
            evidence=ISS] [GO:0003755 "peptidyl-prolyl cis-trans isomerase
            activity" evidence=ISS] [GO:0006457 "protein folding" evidence=ISS]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0006457 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003723 KO:K01802 EMBL:AL844509 HOGENOM:HOG000276232
            GO:GO:0003755 RefSeq:XP_002809024.1 ProteinModelPortal:C0H5C7
            EnsemblProtists:PF13_0122:mRNA GeneID:814093 KEGG:pfa:PF13_0122
            EuPathDB:PlasmoDB:PF3D7_1320900 ProtClustDB:CLSZ2433376
            Uniprot:C0H5C7
        Length = 125

 Score = 130 (50.8 bits), Expect = 3.6e-08, P = 3.6e-08
 Identities = 28/80 (35%), Positives = 47/80 (58%)

Query:   185 TKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAAL 244
             T  LFV G+     EK+L   F  FG++  +++ ++  +K+++G+AF+EY   + A  AL
Sbjct:     7 TDILFVGGIDETIDEKSLYDIFSSFGDIRNIEVPLNMTTKKNRGFAFVEYVEVDDAKHAL 66

Query:   245 KEMNGKIINGWMIVVDVAKT 264
               MN   +NG  I V+ +KT
Sbjct:    67 YNMNNFELNGKRIHVNYSKT 86


>UNIPROTKB|C0H5C7 [details] [associations]
            symbol:PF13_0122 "RRM containing cyclophilin" species:36329
            "Plasmodium falciparum 3D7" [GO:0000413 "protein peptidyl-prolyl
            isomerization" evidence=ISS] [GO:0003723 "RNA binding"
            evidence=ISS] [GO:0003755 "peptidyl-prolyl cis-trans isomerase
            activity" evidence=ISS] [GO:0006457 "protein folding" evidence=ISS]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0006457 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003723 KO:K01802 EMBL:AL844509 HOGENOM:HOG000276232
            GO:GO:0003755 RefSeq:XP_002809024.1 ProteinModelPortal:C0H5C7
            EnsemblProtists:PF13_0122:mRNA GeneID:814093 KEGG:pfa:PF13_0122
            EuPathDB:PlasmoDB:PF3D7_1320900 ProtClustDB:CLSZ2433376
            Uniprot:C0H5C7
        Length = 125

 Score = 130 (50.8 bits), Expect = 3.6e-08, P = 3.6e-08
 Identities = 28/80 (35%), Positives = 47/80 (58%)

Query:   185 TKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAAL 244
             T  LFV G+     EK+L   F  FG++  +++ ++  +K+++G+AF+EY   + A  AL
Sbjct:     7 TDILFVGGIDETIDEKSLYDIFSSFGDIRNIEVPLNMTTKKNRGFAFVEYVEVDDAKHAL 66

Query:   245 KEMNGKIINGWMIVVDVAKT 264
               MN   +NG  I V+ +KT
Sbjct:    67 YNMNNFELNGKRIHVNYSKT 86


>FB|FBgn0016978 [details] [associations]
            symbol:snRNP-U1-70K "small ribonucleoprotein particle U1
            subunit 70K" species:7227 "Drosophila melanogaster" [GO:0005692
            "U11 snRNP" evidence=ISS] [GO:0030532 "small nuclear
            ribonucleoprotein complex" evidence=ISS] [GO:0030619 "U1 snRNA
            binding" evidence=NAS] [GO:0000398 "mRNA splicing, via spliceosome"
            evidence=IC;ISS;NAS] [GO:0003729 "mRNA binding" evidence=ISS;IDA]
            [GO:0005685 "U1 snRNP" evidence=ISS] [GO:0048025 "negative
            regulation of mRNA splicing, via spliceosome" evidence=IPI]
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0000381
            "regulation of alternative mRNA splicing, via spliceosome"
            evidence=IMP] [GO:0005634 "nucleus" evidence=IC] [GO:0005515
            "protein binding" evidence=IPI] [GO:0007052 "mitotic spindle
            organization" evidence=IMP] [GO:0071011 "precatalytic spliceosome"
            evidence=IDA] [GO:0071013 "catalytic step 2 spliceosome"
            evidence=IDA] [GO:0022008 "neurogenesis" evidence=IMP]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0007052 EMBL:AE014134 GO:GO:0022008
            GO:GO:0000166 GO:GO:0016607 GO:GO:0003729 Gene3D:3.30.70.330
            GO:GO:0071011 GO:GO:0000398 GO:GO:0071013 GO:GO:0048025
            eggNOG:COG0724 GO:GO:0000381 GO:GO:0005685 KO:K11093 OMA:KKSRGYL
            InterPro:IPR022023 Pfam:PF12220 GeneTree:ENSGT00530000063750
            EMBL:M31162 EMBL:AY061501 EMBL:AY089622 PIR:A36311
            RefSeq:NP_477205.1 UniGene:Dm.4728 PDB:2BN5 PDBsum:2BN5
            ProteinModelPortal:P17133 SMR:P17133 DIP:DIP-19840N
            MINT:MINT-1583111 STRING:P17133 PaxDb:P17133 PRIDE:P17133
            EnsemblMetazoa:FBtr0079355 EnsemblMetazoa:FBtr0331374
            EnsemblMetazoa:FBtr0331375 GeneID:33982 KEGG:dme:Dmel_CG8749
            CTD:33982 FlyBase:FBgn0016978 InParanoid:P17133 OrthoDB:EOG466T39
            PhylomeDB:P17133 EvolutionaryTrace:P17133 GenomeRNAi:33982
            NextBio:786261 Bgee:P17133 GermOnline:CG8749 Uniprot:P17133
        Length = 448

 Score = 151 (58.2 bits), Expect = 3.7e-08, P = 3.7e-08
 Identities = 34/92 (36%), Positives = 54/92 (58%)

Query:   172 PSDSSEASPTQIKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAF 231
             P++   A+    +T  LF+  +++ TSE  LR  FE +G + ++ +I D+ S + KGYAF
Sbjct:    90 PTEIKNATEDPFRT--LFIARINYDTSESKLRREFEFYGPIKKIVLIHDQESGKPKGYAF 147

Query:   232 IEYTTEEAASAALKEMNGKIINGWMIVVDVAK 263
             IEY  E    AA K  +GK I+   ++VDV +
Sbjct:   148 IEYEHERDMHAAYKHADGKKIDSKRVLVDVER 179


>UNIPROTKB|Q3ZBT6 [details] [associations]
            symbol:TRA2B "Transformer-2 protein homolog beta"
            species:9913 "Bos taurus" [GO:0003729 "mRNA binding" evidence=ISS]
            [GO:0048026 "positive regulation of mRNA splicing, via spliceosome"
            evidence=ISS] [GO:0000381 "regulation of alternative mRNA splicing,
            via spliceosome" evidence=ISS] [GO:0005634 "nucleus" evidence=IEA]
            [GO:0000398 "mRNA splicing, via spliceosome" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0005634 GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330
            GO:GO:0000398 GO:GO:0048026 GO:GO:0000381 HOGENOM:HOG000276232
            GeneTree:ENSGT00700000104309 HSSP:P62995 KO:K12897
            OrthoDB:EOG4BVRW2 EMBL:BC103113 IPI:IPI00717759
            RefSeq:NP_001029948.1 UniGene:Bt.49333 ProteinModelPortal:Q3ZBT6
            SMR:Q3ZBT6 STRING:Q3ZBT6 PRIDE:Q3ZBT6 Ensembl:ENSBTAT00000002225
            GeneID:615156 KEGG:bta:615156 CTD:6434 eggNOG:NOG297815
            HOVERGEN:HBG104971 InParanoid:Q3ZBT6 OMA:YDDREYY NextBio:20899475
            Uniprot:Q3ZBT6
        Length = 288

 Score = 147 (56.8 bits), Expect = 3.8e-08, P = 3.8e-08
 Identities = 35/92 (38%), Positives = 52/92 (56%)

Query:   188 LFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEM 247
             L V GLS YT+E+ LR  F  +G + +V I+ D+ S+RS+G+AF+ +   + A  A +  
Sbjct:   120 LGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERA 179

Query:   248 NGKIINGWMIVVDVAKT------TPKYSRGRP 273
             NG  ++G  I VD + T      TP    GRP
Sbjct:   180 NGMELDGRRIRVDFSITKRPHTPTPGIYMGRP 211


>UNIPROTKB|E2RD37 [details] [associations]
            symbol:TRA2B "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            GeneTree:ENSGT00700000104309 OMA:YDDREYY EMBL:AAEX03017294
            ProteinModelPortal:E2RD37 PRIDE:E2RD37 Ensembl:ENSCAFT00000021194
            NextBio:20853966 Uniprot:E2RD37
        Length = 288

 Score = 147 (56.8 bits), Expect = 3.8e-08, P = 3.8e-08
 Identities = 35/92 (38%), Positives = 52/92 (56%)

Query:   188 LFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEM 247
             L V GLS YT+E+ LR  F  +G + +V I+ D+ S+RS+G+AF+ +   + A  A +  
Sbjct:   120 LGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERA 179

Query:   248 NGKIINGWMIVVDVAKT------TPKYSRGRP 273
             NG  ++G  I VD + T      TP    GRP
Sbjct:   180 NGMELDGRRIRVDFSITKRPHTPTPGIYMGRP 211


>UNIPROTKB|P62995 [details] [associations]
            symbol:TRA2B "Transformer-2 protein homolog beta"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0000398 "mRNA splicing, via spliceosome"
            evidence=IDA] [GO:0005634 "nucleus" evidence=IDA] [GO:0005515
            "protein binding" evidence=IPI] [GO:0000375 "RNA splicing, via
            transesterification reactions" evidence=TAS] [GO:0000381
            "regulation of alternative mRNA splicing, via spliceosome"
            evidence=IDA] [GO:0003729 "mRNA binding" evidence=IDA] [GO:0048026
            "positive regulation of mRNA splicing, via spliceosome"
            evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
            EMBL:CH471052 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0000398
            GO:GO:0048026 GO:GO:0000381 HOGENOM:HOG000276232 KO:K12897
            OrthoDB:EOG4BVRW2 CTD:6434 eggNOG:NOG297815 HOVERGEN:HBG104971
            OMA:YDDREYY EMBL:U61267 EMBL:U87836 EMBL:AF057159 EMBL:U68063
            EMBL:AK301118 EMBL:BC000160 EMBL:BC000451 EMBL:BC005898
            IPI:IPI00220938 IPI:IPI00301503 IPI:IPI00472633
            RefSeq:NP_001230808.1 RefSeq:NP_004584.1 UniGene:Hs.533122 PDB:2CQC
            PDB:2KXN PDB:2RRA PDB:2RRB PDBsum:2CQC PDBsum:2KXN PDBsum:2RRA
            PDBsum:2RRB ProteinModelPortal:P62995 SMR:P62995 DIP:DIP-42278N
            IntAct:P62995 MINT:MINT-5004415 STRING:P62995 PhosphoSite:P62995
            DMDM:51703330 PaxDb:P62995 PRIDE:P62995 DNASU:6434
            Ensembl:ENST00000342294 Ensembl:ENST00000382191
            Ensembl:ENST00000453386 Ensembl:ENST00000456380 GeneID:6434
            KEGG:hsa:6434 UCSC:uc003fpv.3 GeneCards:GC03M185632
            H-InvDB:HIX0003928 HGNC:HGNC:10781 HPA:CAB011692 MIM:602719
            neXtProt:NX_P62995 PharmGKB:PA35697 InParanoid:P62995
            PhylomeDB:P62995 ChiTaRS:TRA2B EvolutionaryTrace:P62995
            GenomeRNAi:6434 NextBio:24991 Bgee:P62995 CleanEx:HS_SFRS10
            Genevestigator:P62995 GermOnline:ENSG00000136527 Uniprot:P62995
        Length = 288

 Score = 147 (56.8 bits), Expect = 3.8e-08, P = 3.8e-08
 Identities = 35/92 (38%), Positives = 52/92 (56%)

Query:   188 LFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEM 247
             L V GLS YT+E+ LR  F  +G + +V I+ D+ S+RS+G+AF+ +   + A  A +  
Sbjct:   120 LGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERA 179

Query:   248 NGKIINGWMIVVDVAKT------TPKYSRGRP 273
             NG  ++G  I VD + T      TP    GRP
Sbjct:   180 NGMELDGRRIRVDFSITKRPHTPTPGIYMGRP 211


>MGI|MGI:106016 [details] [associations]
            symbol:Tra2b "transformer 2 beta homolog (Drosophila)"
            species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0000381 "regulation of alternative mRNA splicing,
            via spliceosome" evidence=ISO] [GO:0000398 "mRNA splicing, via
            spliceosome" evidence=ISO] [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0003729
            "mRNA binding" evidence=ISO] [GO:0005634 "nucleus" evidence=ISO]
            [GO:0006397 "mRNA processing" evidence=IEA] [GO:0008380 "RNA
            splicing" evidence=IEA] [GO:0048026 "positive regulation of mRNA
            splicing, via spliceosome" evidence=ISO] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            MGI:MGI:106016 GO:GO:0005634 GO:GO:0000166 GO:GO:0003729
            Gene3D:3.30.70.330 GO:GO:0000398 GO:GO:0048026 GO:GO:0000381
            HOGENOM:HOG000276232 GeneTree:ENSGT00700000104309 KO:K12897
            OrthoDB:EOG4BVRW2 CTD:6434 eggNOG:NOG297815 HOVERGEN:HBG104971
            OMA:YDDREYY EMBL:X80232 EMBL:AK049573 EMBL:AK077418 EMBL:AK080378
            EMBL:BC061177 IPI:IPI00139259 IPI:IPI00457594 PIR:S68798
            RefSeq:NP_033212.1 UniGene:Mm.210352 UniGene:Mm.389440
            UniGene:Mm.442193 ProteinModelPortal:P62996 SMR:P62996
            STRING:P62996 PhosphoSite:P62996 PaxDb:P62996 PRIDE:P62996
            Ensembl:ENSMUST00000161286 Ensembl:ENSMUST00000162413 GeneID:20462
            KEGG:mmu:20462 UCSC:uc007ysc.1 InParanoid:P62996 NextBio:298551
            Bgee:P62996 Genevestigator:P62996 GermOnline:ENSMUSG00000022858
            Uniprot:P62996
        Length = 288

 Score = 147 (56.8 bits), Expect = 3.8e-08, P = 3.8e-08
 Identities = 35/92 (38%), Positives = 52/92 (56%)

Query:   188 LFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEM 247
             L V GLS YT+E+ LR  F  +G + +V I+ D+ S+RS+G+AF+ +   + A  A +  
Sbjct:   120 LGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERA 179

Query:   248 NGKIINGWMIVVDVAKT------TPKYSRGRP 273
             NG  ++G  I VD + T      TP    GRP
Sbjct:   180 NGMELDGRRIRVDFSITKRPHTPTPGIYMGRP 211


>RGD|619886 [details] [associations]
            symbol:Tra2b "transformer 2 beta homolog (Drosophila)"
            species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0000302 "response to reactive oxygen species"
            evidence=IEP] [GO:0000381 "regulation of alternative mRNA splicing,
            via spliceosome" evidence=ISO;ISS] [GO:0000398 "mRNA splicing, via
            spliceosome" evidence=ISO;ISS] [GO:0003723 "RNA binding"
            evidence=NAS] [GO:0003729 "mRNA binding" evidence=ISO;ISS]
            [GO:0005515 "protein binding" evidence=IPI] [GO:0005634 "nucleus"
            evidence=ISO;ISS] [GO:0048026 "positive regulation of mRNA
            splicing, via spliceosome" evidence=ISO;ISS] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            RGD:619886 GO:GO:0005634 GO:GO:0000166 GO:GO:0003729
            Gene3D:3.30.70.330 GO:GO:0000302 GO:GO:0000398 GO:GO:0048026
            GO:GO:0000381 HOGENOM:HOG000276232 GeneTree:ENSGT00700000104309
            KO:K12897 OrthoDB:EOG4BVRW2 CTD:6434 eggNOG:NOG297815
            HOVERGEN:HBG104971 EMBL:D49708 EMBL:BC070948 IPI:IPI00202484
            RefSeq:NP_476460.1 UniGene:Rn.8538 ProteinModelPortal:P62997
            SMR:P62997 IntAct:P62997 STRING:P62997 PhosphoSite:P62997
            PRIDE:P62997 Ensembl:ENSRNOT00000002429 GeneID:117259
            KEGG:rno:117259 UCSC:RGD:619886 InParanoid:P62997 NextBio:620130
            Genevestigator:P62997 GermOnline:ENSRNOG00000001783 Uniprot:P62997
        Length = 288

 Score = 147 (56.8 bits), Expect = 3.8e-08, P = 3.8e-08
 Identities = 35/92 (38%), Positives = 52/92 (56%)

Query:   188 LFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEM 247
             L V GLS YT+E+ LR  F  +G + +V I+ D+ S+RS+G+AF+ +   + A  A +  
Sbjct:   120 LGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERA 179

Query:   248 NGKIINGWMIVVDVAKT------TPKYSRGRP 273
             NG  ++G  I VD + T      TP    GRP
Sbjct:   180 NGMELDGRRIRVDFSITKRPHTPTPGIYMGRP 211


>MGI|MGI:1889294 [details] [associations]
            symbol:Rbm38 "RNA binding motif protein 38" species:10090
            "Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
            binding" evidence=IEA] [GO:0003729 "mRNA binding" evidence=ISO;IMP]
            [GO:0003730 "mRNA 3'-UTR binding" evidence=ISO] [GO:0005634
            "nucleus" evidence=ISO] [GO:0005737 "cytoplasm" evidence=IEA]
            [GO:0005829 "cytosol" evidence=ISO] [GO:0006397 "mRNA processing"
            evidence=IEA] [GO:0006977 "DNA damage response, signal transduction
            by p53 class mediator resulting in cell cycle arrest" evidence=ISO]
            [GO:0006978 "DNA damage response, signal transduction by p53 class
            mediator resulting in transcription of p21 class mediator"
            evidence=ISO] [GO:0007049 "cell cycle" evidence=IEA] [GO:0007050
            "cell cycle arrest" evidence=ISO] [GO:0008285 "negative regulation
            of cell proliferation" evidence=ISO] [GO:0008380 "RNA splicing"
            evidence=IEA] [GO:0010830 "regulation of myotube differentiation"
            evidence=IDA] [GO:0030154 "cell differentiation" evidence=IEA]
            [GO:0043484 "regulation of RNA splicing" evidence=ISO] [GO:0070935
            "3'-UTR-mediated mRNA stabilization" evidence=ISO]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 MGI:MGI:1889294 GO:GO:0005829 GO:GO:0005634
            GO:GO:0008285 GO:GO:0030154 GO:GO:0006977 GO:GO:0008380
            GO:GO:0000166 GO:GO:0003729 GO:GO:0006397 Gene3D:3.30.70.330
            GO:GO:0007050 EMBL:CH466551 GO:GO:0003730 GO:GO:0043484
            GO:GO:0006978 HOGENOM:HOG000276232 GO:GO:0070935 EMBL:AL928599
            GO:GO:0010830 HOVERGEN:HBG108399 GeneTree:ENSGT00390000002308
            OrthoDB:EOG4DV5NS eggNOG:NOG248750 CTD:55544 OMA:VGYGYPA
            EMBL:X75316 EMBL:AK146026 EMBL:AK162141 EMBL:AK172625 EMBL:BC085307
            IPI:IPI00122313 PIR:S38384 RefSeq:NP_062420.2 UniGene:Mm.485782
            ProteinModelPortal:Q62176 SMR:Q62176 STRING:Q62176
            PhosphoSite:Q62176 PaxDb:Q62176 PRIDE:Q62176
            Ensembl:ENSMUST00000029014 Ensembl:ENSMUST00000173393 GeneID:56190
            KEGG:mmu:56190 UCSC:uc008odh.1 InParanoid:Q5U418 ChiTaRS:RBM38
            NextBio:311992 Bgee:Q62176 CleanEx:MM_RBM38 Genevestigator:Q62176
            GermOnline:ENSMUSG00000027510 Uniprot:Q62176
        Length = 237

 Score = 143 (55.4 bits), Expect = 5.3e-08, P = 5.3e-08
 Identities = 34/94 (36%), Positives = 53/94 (56%)

Query:   169 SMVPSDSSEASPTQIKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKG 228
             S  PS +   S       K+FV GL ++T++ +LR  FEGFG++ E  +I D+ + +S+G
Sbjct:    16 SAAPS-AMHGSQKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRG 74

Query:   229 YAFIEYTTEEAASAALKEMNGKIINGWMIVVDVA 262
             Y F+      AA  A K+ N  II+G    V++A
Sbjct:    75 YGFVTMADRAAADRACKDPN-PIIDGRKANVNLA 107


>RGD|1308503 [details] [associations]
            symbol:Rbm38 "RNA binding motif protein 38" species:10116
            "Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003730 "mRNA 3'-UTR binding" evidence=IEA] [GO:0006977 "DNA
            damage response, signal transduction by p53 class mediator
            resulting in cell cycle arrest" evidence=IEA] [GO:0006978 "DNA
            damage response, signal transduction by p53 class mediator
            resulting in transcription of p21 class mediator" evidence=IEA]
            [GO:0007050 "cell cycle arrest" evidence=IEA] [GO:0008285 "negative
            regulation of cell proliferation" evidence=IEA] [GO:0010830
            "regulation of myotube differentiation" evidence=IEA] [GO:0043484
            "regulation of RNA splicing" evidence=IEA] [GO:0070935
            "3'-UTR-mediated mRNA stabilization" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 RGD:1308503 GO:GO:0008285 GO:GO:0006977 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0007050 GO:GO:0003730 GO:GO:0043484
            GO:GO:0006978 GO:GO:0070935 GO:GO:0010830 EMBL:CH474062
            GeneTree:ENSGT00390000002308 OrthoDB:EOG4DV5NS OMA:VGYGYPA
            IPI:IPI00190605 UniGene:Rn.17628 Ensembl:ENSRNOT00000008764
            Uniprot:D3ZGE9
        Length = 237

 Score = 143 (55.4 bits), Expect = 5.3e-08, P = 5.3e-08
 Identities = 34/94 (36%), Positives = 53/94 (56%)

Query:   169 SMVPSDSSEASPTQIKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKG 228
             S  PS +   S       K+FV GL ++T++ +LR  FEGFG++ E  +I D+ + +S+G
Sbjct:    16 SAAPS-AMHGSQKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRG 74

Query:   229 YAFIEYTTEEAASAALKEMNGKIINGWMIVVDVA 262
             Y F+      AA  A K+ N  II+G    V++A
Sbjct:    75 YGFVTMADRAAADRACKDPN-PIIDGRKANVNLA 107


>UNIPROTKB|Q83D11 [details] [associations]
            symbol:CBU_0935 "RNA binding protein" species:227377
            "Coxiella burnetii RSA 493" [GO:0008150 "biological_process"
            evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003676 EMBL:AE016828 GenomeReviews:AE016828_GR HSSP:Q9V535
            RefSeq:NP_819948.1 ProteinModelPortal:Q83D11 GeneID:1208828
            KEGG:cbu:CBU_0935 PATRIC:17930577 HOGENOM:HOG000026939 OMA:QVHSANI
            ProtClustDB:CLSK914425 BioCyc:CBUR227377:GJ7S-926-MONOMER
            Uniprot:Q83D11
        Length = 129

 Score = 128 (50.1 bits), Expect = 6.0e-08, P = 6.0e-08
 Identities = 29/78 (37%), Positives = 46/78 (58%)

Query:   187 KLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKE 246
             +++V  L ++  E  L   F  FG +  VKI+ +  + RSKGYAF+ Y T + A  AL +
Sbjct:    45 QIYVGNLPYHVVENDLHQYFSRFGAIESVKIVRNFRTGRSKGYAFVTYVTPKQAVKAL-D 103

Query:   247 MNGKIINGWMIVVDVAKT 264
              +GK + G  +VV +AK+
Sbjct:   104 AHGKDLQGRSLVVRIAKS 121


>TIGR_CMR|CBU_0935 [details] [associations]
            symbol:CBU_0935 "RNA-binding protein" species:227377
            "Coxiella burnetii RSA 493" [GO:0008150 "biological_process"
            evidence=ND] [GO:0003723 "RNA binding" evidence=ISS]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            EMBL:AE016828 GenomeReviews:AE016828_GR HSSP:Q9V535
            RefSeq:NP_819948.1 ProteinModelPortal:Q83D11 GeneID:1208828
            KEGG:cbu:CBU_0935 PATRIC:17930577 HOGENOM:HOG000026939 OMA:QVHSANI
            ProtClustDB:CLSK914425 BioCyc:CBUR227377:GJ7S-926-MONOMER
            Uniprot:Q83D11
        Length = 129

 Score = 128 (50.1 bits), Expect = 6.0e-08, P = 6.0e-08
 Identities = 29/78 (37%), Positives = 46/78 (58%)

Query:   187 KLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKE 246
             +++V  L ++  E  L   F  FG +  VKI+ +  + RSKGYAF+ Y T + A  AL +
Sbjct:    45 QIYVGNLPYHVVENDLHQYFSRFGAIESVKIVRNFRTGRSKGYAFVTYVTPKQAVKAL-D 103

Query:   247 MNGKIINGWMIVVDVAKT 264
              +GK + G  +VV +AK+
Sbjct:   104 AHGKDLQGRSLVVRIAKS 121


>UNIPROTKB|I3LBN9 [details] [associations]
            symbol:TRA2B "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0048026 "positive regulation of mRNA splicing, via
            spliceosome" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
            [GO:0003729 "mRNA binding" evidence=IEA] [GO:0000398 "mRNA
            splicing, via spliceosome" evidence=IEA] [GO:0000381 "regulation of
            alternative mRNA splicing, via spliceosome" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0005634 GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330
            GO:GO:0000398 GO:GO:0048026 GO:GO:0000381
            GeneTree:ENSGT00700000104309 OMA:YDDREYY Ensembl:ENSSSCT00000025696
            Uniprot:I3LBN9
        Length = 280

 Score = 145 (56.1 bits), Expect = 6.1e-08, P = 6.1e-08
 Identities = 35/92 (38%), Positives = 51/92 (55%)

Query:   188 LFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEM 247
             L V GLS YT+E  LR  F  +G + +V I+ D+ S+RS+G+AF+ +   + A  A +  
Sbjct:   112 LGVFGLSLYTTESDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERA 171

Query:   248 NGKIINGWMIVVDVAKT------TPKYSRGRP 273
             NG  ++G  I VD + T      TP    GRP
Sbjct:   172 NGMELDGRRIRVDFSITKRPHTPTPGIYMGRP 203


>UNIPROTKB|F8VZ49 [details] [associations]
            symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
            evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0045111
            "intermediate filament cytoskeleton" evidence=IDA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0005737 GO:GO:0005730 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0045111 EMBL:AC078778
            HGNC:HGNC:5031 ChiTaRS:HNRNPA1 IPI:IPI01022460
            ProteinModelPortal:F8VZ49 SMR:F8VZ49 PRIDE:F8VZ49
            Ensembl:ENST00000548688 ArrayExpress:F8VZ49 Bgee:F8VZ49
            Uniprot:F8VZ49
        Length = 231

 Score = 142 (55.0 bits), Expect = 6.1e-08, P = 6.1e-08
 Identities = 34/98 (34%), Positives = 56/98 (57%)

Query:   176 SEASPTQIKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYT 235
             S   P Q++  KLF+ GLSF T++++LR+ FE +G L +  ++ D  +KRS+G+ F+ Y 
Sbjct:    25 SPKEPEQLR--KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYA 82

Query:   236 TEEAASAALKEMNGKIINGWMIVVDVAKTTPKYSRGRP 273
             T E   AA+     K+ +G   VV+  +   +    RP
Sbjct:    83 TVEEVDAAMNARPHKV-DGR--VVEPKRAVSREDSQRP 117


>UNIPROTKB|A5GFN7 [details] [associations]
            symbol:RNPC1 "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
            HOGENOM:HOG000276232 EMBL:CR956362 HOVERGEN:HBG108399
            GeneTree:ENSGT00390000002308 UniGene:Ssc.29738
            ProteinModelPortal:A5GFN7 STRING:A5GFN7 Ensembl:ENSSSCT00000033672
            ArrayExpress:A5GFN7 Uniprot:A5GFN7
        Length = 193

 Score = 136 (52.9 bits), Expect = 6.1e-08, P = 6.1e-08
 Identities = 26/65 (40%), Positives = 41/65 (63%)

Query:   187 KLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKE 246
             K+FV GL ++T++ +LR  FEGFG++ E  +I D+ + +S+GY F+      AA  A K+
Sbjct:    35 KIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKD 94

Query:   247 MNGKI 251
              N  I
Sbjct:    95 PNPNI 99


>DICTYBASE|DDB_G0284663 [details] [associations]
            symbol:mrd1 "RNA-binding region RNP-1
            domain-containing protein" species:44689 "Dictyostelium discoideum"
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
            "nucleotide binding" evidence=IEA] [GO:0008150 "biological_process"
            evidence=ND] [GO:0003674 "molecular_function" evidence=ND]
            [GO:0030515 "snoRNA binding" evidence=ISS] [GO:0006364 "rRNA
            processing" evidence=ISS] [GO:0005730 "nucleolus" evidence=ISS]
            [GO:0005634 "nucleus" evidence=IEA;ISS] [GO:0003723 "RNA binding"
            evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 dictyBase:DDB_G0284663 GO:GO:0005730
            GenomeReviews:CM000153_GR GO:GO:0000166 GO:GO:0030515
            Gene3D:3.30.70.330 GO:GO:0006364 eggNOG:COG0724 EMBL:AAFI02000070
            KO:K14787 RefSeq:XP_638463.1 HSSP:Q8R3C6 ProteinModelPortal:Q54PB2
            SMR:Q54PB2 STRING:Q54PB2 EnsemblProtists:DDB0233347 GeneID:8624714
            KEGG:ddi:DDB_G0284663 OMA:YLEWAPR Uniprot:Q54PB2
        Length = 895

 Score = 153 (58.9 bits), Expect = 6.1e-08, P = 6.1e-08
 Identities = 40/121 (33%), Positives = 64/121 (52%)

Query:   151 DENFGSENKDYGGNNLQNSMVPSDSSEASPTQI-----KTKKLFVTGLSFYTSEKTLRAA 205
             D+    ++ D  G++ ++ + P    E   T+      ++ ++FV  LS+ T E+ L   
Sbjct:   321 DKKKNKKDNDNDGDDDESKIKPIKYFEHDYTKEDEDVGESGRIFVRNLSYSTKEEDLEKV 380

Query:   206 FEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVDVAKTT 265
             F  FG++ E+ I +D  SK+SKG AFI Y   E A  AL +M+GK+  G +I V   K  
Sbjct:   381 FSKFGKISEIHIPIDYDSKKSKGIAFILYLIPENAVQALNDMDGKVFQGRLIHVLPGKAA 440

Query:   266 P 266
             P
Sbjct:   441 P 441


>UNIPROTKB|Q32P51 [details] [associations]
            symbol:HNRNPA1L2 "Heterogeneous nuclear ribonucleoprotein
            A1-like 2" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
            binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
            [GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0051028 "mRNA
            transport" evidence=IEA] [GO:0000380 "alternative mRNA splicing,
            via spliceosome" evidence=IEA] [GO:0005737 "cytoplasm"
            evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 GO:GO:0005737 GO:GO:0008380
            GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005681
            GO:GO:0003723 GO:GO:0051028 eggNOG:COG0724 HSSP:Q61474
            EMBL:CH471124 EMBL:AK123159 EMBL:AL137058 EMBL:BC108266
            IPI:IPI00879501 RefSeq:NP_001011724.1 RefSeq:NP_001011725.1
            UniGene:Hs.447506 ProteinModelPortal:Q32P51 SMR:Q32P51
            IntAct:Q32P51 STRING:Q32P51 PhosphoSite:Q32P51 DMDM:190356061
            PaxDb:Q32P51 PRIDE:Q32P51 Ensembl:ENST00000342657
            Ensembl:ENST00000357495 Ensembl:ENST00000398039 GeneID:144983
            KEGG:hsa:144983 UCSC:uc001vgx.1 CTD:144983 GeneCards:GC13P053192
            HGNC:HGNC:27067 neXtProt:NX_Q32P51 PharmGKB:PA164720701
            HOGENOM:HOG000234442 InParanoid:Q32P51 KO:K12741 OMA:HYGSIVD
            OrthoDB:EOG4HQDKF GenomeRNAi:144983 NextBio:85023 Bgee:Q32P51
            Genevestigator:Q32P51 InterPro:IPR021662 Pfam:PF11627
            Uniprot:Q32P51
        Length = 320

 Score = 146 (56.5 bits), Expect = 6.9e-08, P = 6.9e-08
 Identities = 35/100 (35%), Positives = 58/100 (58%)

Query:   175 SSEASPTQIKT-KKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIE 233
             S  ASP + +  +KLF+ GLSF T++++LR+ FE +G L +  ++ D  +KRS+G+ F+ 
Sbjct:     2 SKSASPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVT 61

Query:   234 YTTEEAASAALKEMNGKIINGWMIVVDVAKTTPKYSRGRP 273
             Y T E   AA+     K+ +G   VV+  +   +    RP
Sbjct:    62 YATVEEVDAAMNTTPHKV-DGR--VVEPKRAVSREDSQRP 98


>FB|FBgn0033378 [details] [associations]
            symbol:tsu "tsunagi" species:7227 "Drosophila melanogaster"
            [GO:0003729 "mRNA binding" evidence=ISS;NAS] [GO:0007310 "oocyte
            dorsal/ventral axis specification" evidence=IMP] [GO:0007314
            "oocyte anterior/posterior axis specification" evidence=IMP]
            [GO:0005737 "cytoplasm" evidence=IDA] [GO:0000226 "microtubule
            cytoskeleton organization" evidence=IMP] [GO:0007312 "oocyte
            nucleus migration involved in oocyte dorsal/ventral axis
            specification" evidence=IMP] [GO:0005634 "nucleus" evidence=IDA]
            [GO:0007317 "regulation of pole plasm oskar mRNA localization"
            evidence=IMP;IPI] [GO:0006406 "mRNA export from nucleus"
            evidence=NAS] [GO:0005515 "protein binding" evidence=IPI]
            [GO:0045451 "pole plasm oskar mRNA localization" evidence=TAS]
            [GO:0046595 "establishment of pole plasm mRNA localization"
            evidence=TAS] [GO:0006396 "RNA processing" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0007294
            "germarium-derived oocyte fate determination" evidence=IMP]
            [GO:0000398 "mRNA splicing, via spliceosome" evidence=IC]
            [GO:0071013 "catalytic step 2 spliceosome" evidence=IDA]
            [GO:0035145 "exon-exon junction complex" evidence=IPI] [GO:0007173
            "epidermal growth factor receptor signaling pathway" evidence=IMP]
            InterPro:IPR000504 InterPro:IPR008111 InterPro:IPR012677
            Pfam:PF00076 PRINTS:PR01738 PROSITE:PS50102 SMART:SM00360
            EMBL:AE013599 GO:GO:0005737 GO:GO:0007173 GO:GO:0000226
            GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0006406
            GO:GO:0000398 GO:GO:0071013 GO:GO:0007312 eggNOG:COG0724
            GO:GO:0045451 GO:GO:0035145 GO:GO:0007317
            GeneTree:ENSGT00550000074641 PDB:1HL6 PDB:1OO0 PDB:1RK8 PDB:2X1G
            PDBsum:1HL6 PDBsum:1OO0 PDBsum:1RK8 PDBsum:2X1G KO:K12876
            OMA:WILFVTS EMBL:AF173550 EMBL:AY071005 RefSeq:NP_610454.2
            UniGene:Dm.19884 ProteinModelPortal:Q9V535 SMR:Q9V535
            DIP:DIP-24075N IntAct:Q9V535 MINT:MINT-816263 STRING:Q9V535
            PaxDb:Q9V535 PRIDE:Q9V535 EnsemblMetazoa:FBtr0088567 GeneID:35924
            KEGG:dme:Dmel_CG8781 UCSC:CG8781-RA CTD:110124 FlyBase:FBgn0033378
            InParanoid:Q9V535 OrthoDB:EOG4N02X6 PhylomeDB:Q9V535
            EvolutionaryTrace:Q9V535 GenomeRNAi:35924 NextBio:795852
            Bgee:Q9V535 GermOnline:CG8781 GO:GO:0046595 Uniprot:Q9V535
        Length = 165

 Score = 127 (49.8 bits), Expect = 7.8e-08, P = 7.8e-08
 Identities = 36/134 (26%), Positives = 63/134 (47%)

Query:   130 ELDDECAQELTGVPGVLSVQPDENFGSENKDYGGNNLQNSMVPSDSSEASPTQIKTKK-- 187
             E+D++  Q +  +      +    FGS++      +    +   D  E  P   ++ +  
Sbjct:    14 EVDEDGDQGIVRLKEKAKHRKGRGFGSDSNTREAIHSYERVRNEDDDELEPGPQRSVEGW 73

Query:   188 -LFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKE 246
              LFVT +     E  ++  F  +GE+  + + +D+ +  SKGYA +EY T + A AA + 
Sbjct:    74 ILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEA 133

Query:   247 MNGKIINGWMIVVD 260
             +NG  I G  I VD
Sbjct:   134 LNGAEIMGQTIQVD 147


>UNIPROTKB|D6RBQ9 [details] [associations]
            symbol:HNRNPD "Heterogeneous nuclear ribonucleoprotein D0"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            HOGENOM:HOG000234441 EMBL:AC124016 HGNC:HGNC:5036 ChiTaRS:HNRNPD
            InterPro:IPR012956 Pfam:PF08143 IPI:IPI00963980
            ProteinModelPortal:D6RBQ9 SMR:D6RBQ9 Ensembl:ENST00000503822
            ArrayExpress:D6RBQ9 Bgee:D6RBQ9 Uniprot:D6RBQ9
        Length = 155

 Score = 127 (49.8 bits), Expect = 7.8e-08, P = 7.8e-08
 Identities = 28/81 (34%), Positives = 50/81 (61%)

Query:   177 EASPTQIKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTT 236
             +AS  +    K+F+ GLS+ T++K L+  F  FGE+V+  + +D I+ RS+G+ F+ +  
Sbjct:    69 DASKNEEDEGKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKE 128

Query:   237 EEAASAAL--KE--MNGKIIN 253
              E+    +  KE  +NGK+I+
Sbjct:   129 SESVDKVMDQKEHKLNGKVID 149


>UNIPROTKB|H0YEQ8 [details] [associations]
            symbol:PABPC4 "Polyadenylate-binding protein 4"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            EMBL:AL365277 EMBL:AL845289 HGNC:HGNC:8557 ChiTaRS:PABPC4
            Ensembl:ENST00000470443 Uniprot:H0YEQ8
        Length = 112

 Score = 127 (49.8 bits), Expect = 7.8e-08, P = 7.8e-08
 Identities = 27/80 (33%), Positives = 45/80 (56%)

Query:   176 SEASPTQIKTK--KLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIE 233
             S+  P+  K+    +F+  L      K L   F  FG ++  K++ D+    SKGYAF+ 
Sbjct:    31 SQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYAFVH 88

Query:   234 YTTEEAASAALKEMNGKIIN 253
             + T+EAA  A+++MNG ++N
Sbjct:    89 FETQEAADKAIEKMNGMLLN 108


>UNIPROTKB|F1SP49 [details] [associations]
            symbol:F1SP49 "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00700000104376
            EMBL:FP016004 Ensembl:ENSSSCT00000005972 OMA:SHTANGH
            ArrayExpress:F1SP49 Uniprot:F1SP49
        Length = 162

 Score = 127 (49.8 bits), Expect = 7.8e-08, P = 7.8e-08
 Identities = 28/86 (32%), Positives = 48/86 (55%)

Query:   166 LQNSMVPSDSSEASPTQIKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKR 225
             L  +++    S   P Q++  K+F+ GLSF T+++ LR+  E +G L +  +  D  +KR
Sbjct:     3 LPTTIMSKSESPKEPEQLR--KVFLGGLSFETTDERLRSHSEQWGTLTDCVVRRDPNTKR 60

Query:   226 SKGYAFIEYTTEEAASAALKEMNGKI 251
             S+G+ F+ YTT E    A+     K+
Sbjct:    61 SRGFRFVTYTTVEEVDTAMNTRPHKV 86


>WB|WBGene00011155 [details] [associations]
            symbol:R09B3.2 species:6239 "Caenorhabditis elegans"
            [GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
            HOGENOM:HOG000276232 GeneTree:ENSGT00550000074641 EMBL:Z81108
            HSSP:P33240 PIR:T24067 RefSeq:NP_493022.1 ProteinModelPortal:O45712
            SMR:O45712 DIP:DIP-25840N MINT:MINT-1057569 STRING:O45712
            PaxDb:O45712 EnsemblMetazoa:R09B3.2 GeneID:173070
            KEGG:cel:CELE_R09B3.2 UCSC:R09B3.2 CTD:173070 WormBase:R09B3.2
            InParanoid:O45712 OMA:NINEARP NextBio:878155 Uniprot:O45712
        Length = 83

 Score = 127 (49.8 bits), Expect = 7.8e-08, P = 7.8e-08
 Identities = 26/75 (34%), Positives = 46/75 (61%)

Query:   188 LFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEM 247
             ++V    F T+E+ L   F   G++  V+I+ D+ + R +G+AFIE+  E +A  A+++M
Sbjct:     7 VYVGNAPFQTTEEELGNFFSSIGQINNVRIVCDRETGRPRGFAFIEFAEEGSAQRAVEQM 66

Query:   248 NGKIINGWMIVVDVA 262
             NG   NG  + V++A
Sbjct:    67 NGAEFNGRPLRVNLA 81


>FB|FBgn0086675 [details] [associations]
            symbol:fne "found in neurons" species:7227 "Drosophila
            melanogaster" [GO:0003729 "mRNA binding" evidence=ISS;NAS]
            [GO:0005737 "cytoplasm" evidence=IDA] [GO:0051252 "regulation of
            RNA metabolic process" evidence=IMP] [GO:0008266 "poly(U) RNA
            binding" evidence=IDA] [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0008049 "male courtship behavior" evidence=IMP]
            InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
            InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
            SMART:SM00360 GO:GO:0005737 GO:GO:0008266 GO:GO:0000166
            EMBL:AE014298 GO:GO:0003729 Gene3D:3.30.70.330 eggNOG:COG0724
            TIGRFAMs:TIGR01661 GeneTree:ENSGT00560000077064 KO:K13208
            OMA:SNSRNCP HSSP:Q60900 GO:GO:0051252 EMBL:AF239667 EMBL:BT120384
            RefSeq:NP_001096965.1 RefSeq:NP_001245646.1 RefSeq:NP_001245648.1
            RefSeq:NP_001245649.1 RefSeq:NP_572842.1 UniGene:Dm.3314 SMR:Q9VYI0
            IntAct:Q9VYI0 MINT:MINT-1646975 STRING:Q9VYI0
            EnsemblMetazoa:FBtr0073712 EnsemblMetazoa:FBtr0113493
            EnsemblMetazoa:FBtr0306738 EnsemblMetazoa:FBtr0308694
            EnsemblMetazoa:FBtr0308695 EnsemblMetazoa:FBtr0333319
            EnsemblMetazoa:FBtr0333320 GeneID:32245 KEGG:dme:Dmel_CG4396
            UCSC:CG4396-RA CTD:32245 FlyBase:FBgn0086675 InParanoid:Q9VYI0
            OrthoDB:EOG44B8HT GenomeRNAi:32245 NextBio:777561 Uniprot:Q9VYI0
        Length = 356

 Score = 146 (56.5 bits), Expect = 9.0e-08, P = 9.0e-08
 Identities = 32/93 (34%), Positives = 48/93 (51%)

Query:   163 GNNLQNSMVPSDSSEASPTQIKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKI 222
             G  LQN ++    +  S   IK   L+V+GL    S+  L   F  FG+++  +I+ D I
Sbjct:   107 GLRLQNKVIKVSYARPSSESIKGANLYVSGLPKNLSQPDLEGMFASFGKIITSRILCDNI 166

Query:   223 SKRSKGYAFIEYTTEEAASAALKEMNGKIINGW 255
             S  SKG  FI +     A  A++E+NGK   G+
Sbjct:   167 SGLSKGVGFIRFDQRNEAERAIQELNGKTPKGY 199


>UNIPROTKB|D4ACJ8 [details] [associations]
            symbol:Hnrnpa1 "Heterogeneous nuclear ribonucleoprotein A1"
            species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 RGD:69234 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003676 IPI:IPI00780243 Ensembl:ENSRNOT00000055282
            ArrayExpress:D4ACJ8 Uniprot:D4ACJ8
        Length = 268

 Score = 143 (55.4 bits), Expect = 9.2e-08, P = 9.2e-08
 Identities = 36/104 (34%), Positives = 60/104 (57%)

Query:   170 MVPSDSSEASPTQIKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGY 229
             M  S+S +  P Q++  KLF+ GLSF T++++LR+ FE +G L +  ++ D  +KRS+G+
Sbjct:     1 MSKSESPK-EPEQLR--KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGF 57

Query:   230 AFIEYTTEEAASAALKEMNGKIINGWMIVVDVAKTTPKYSRGRP 273
              F+ Y T E   AA+     K+ +G   VV+  +   +    RP
Sbjct:    58 GFVTYATVEEVDAAMNARPHKV-DGR--VVEPKRAVSREDSQRP 98


>UNIPROTKB|Q9H0Z9 [details] [associations]
            symbol:RBM38 "RNA-binding protein 38" species:9606 "Homo
            sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0006397
            "mRNA processing" evidence=IEA] [GO:0007049 "cell cycle"
            evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0030154
            "cell differentiation" evidence=IEA] [GO:0003729 "mRNA binding"
            evidence=IEA;IDA] [GO:0010830 "regulation of myotube
            differentiation" evidence=IEA] [GO:0005634 "nucleus"
            evidence=IEA;IDA] [GO:0005829 "cytosol" evidence=IEA;IDA]
            [GO:0043484 "regulation of RNA splicing" evidence=IDA] [GO:0003730
            "mRNA 3'-UTR binding" evidence=IDA] [GO:0006977 "DNA damage
            response, signal transduction by p53 class mediator resulting in
            cell cycle arrest" evidence=IDA] [GO:0006978 "DNA damage response,
            signal transduction by p53 class mediator resulting in
            transcription of p21 class mediator" evidence=IDA] [GO:0007050
            "cell cycle arrest" evidence=IDA] [GO:0008285 "negative regulation
            of cell proliferation" evidence=IDA] [GO:0070935 "3'-UTR-mediated
            mRNA stabilization" evidence=IDA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0005829 GO:GO:0005634 EMBL:CH471077 GO:GO:0008285
            GO:GO:0030154 GO:GO:0006977 GO:GO:0008380 GO:GO:0000166
            GO:GO:0003729 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0007050
            GO:GO:0007049 GO:GO:0003730 GO:GO:0043484 GO:GO:0006978
            eggNOG:COG0724 GO:GO:0070935 GO:GO:0010830 EMBL:AL109955
            HOVERGEN:HBG108399 EMBL:AF432218 EMBL:X75314 EMBL:X75315
            EMBL:BC018711 IPI:IPI00306057 IPI:IPI00374855 RefSeq:NP_059965.2
            RefSeq:NP_906270.1 UniGene:Hs.236361 PDB:2CQD PDBsum:2CQD
            ProteinModelPortal:Q9H0Z9 SMR:Q9H0Z9 IntAct:Q9H0Z9 STRING:Q9H0Z9
            PhosphoSite:Q9H0Z9 DMDM:215273895 PaxDb:Q9H0Z9 DNASU:55544
            Ensembl:ENST00000356208 Ensembl:ENST00000440234 GeneID:55544
            KEGG:hsa:55544 UCSC:uc010zzj.2 CTD:55544 GeneCards:GC20P055966
            H-InvDB:HIX0015939 HGNC:HGNC:15818 HPA:CAB017036 MIM:612428
            neXtProt:NX_Q9H0Z9 PharmGKB:PA34449 InParanoid:Q9H0Z9 OMA:VGYGYPA
            EvolutionaryTrace:Q9H0Z9 GenomeRNAi:55544 NextBio:59995
            ArrayExpress:Q9H0Z9 Bgee:Q9H0Z9 CleanEx:HS_RBM38
            Genevestigator:Q9H0Z9 GermOnline:ENSG00000132819 Uniprot:Q9H0Z9
        Length = 239

 Score = 141 (54.7 bits), Expect = 9.8e-08, P = 9.8e-08
 Identities = 30/76 (39%), Positives = 48/76 (63%)

Query:   187 KLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKE 246
             K+FV GL ++T++ +LR  FEGFG++ E  +I D+ + +S+GY F+      AA  A K+
Sbjct:    35 KIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKD 94

Query:   247 MNGKIINGWMIVVDVA 262
              N  II+G    V++A
Sbjct:    95 PN-PIIDGRKANVNLA 109


>ZFIN|ZDB-GENE-040825-2 [details] [associations]
            symbol:snrnp70 "small nuclear ribonucleoprotein 70
            (U1)" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0060218 "hematopoietic stem cell differentiation" evidence=IMP]
            [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 ZFIN:ZDB-GENE-040825-2 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0060218 GO:GO:0030529
            KO:K11093 OMA:KKSRGYL InterPro:IPR022023 Pfam:PF12220 CTD:6625
            GeneTree:ENSGT00530000063750 EMBL:BX324157 EMBL:AY648811
            IPI:IPI00817875 RefSeq:NP_001003875.1 UniGene:Dr.35845
            STRING:Q6DRE8 Ensembl:ENSDART00000055279 GeneID:445398
            KEGG:dre:445398 InParanoid:Q6DRE8 NextBio:20832103 Uniprot:Q6DRE8
        Length = 495

 Score = 148 (57.2 bits), Expect = 9.8e-08, P = 9.8e-08
 Identities = 37/104 (35%), Positives = 59/104 (56%)

Query:   172 PSDSSEASPTQIKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAF 231
             P + + A     KT  LFV  +++ T+E  LR  FE +G +  + I+ +K + + +GYAF
Sbjct:    91 PHNDANAQGDAFKT--LFVARINYDTTESKLRREFEVYGPIKRIYIVYNKKTGKPRGYAF 148

Query:   232 IEYTTEEAASAALKEMNGKIINGWMIVVDVAKTTPKYSRG-RPR 274
             IEY  E    +A K  +GK I+G  ++VDV +   +  +G RPR
Sbjct:   149 IEYEHERDMHSAYKHADGKKIDGRRVLVDVERG--RTVKGWRPR 190


>TAIR|locus:2164042 [details] [associations]
            symbol:AT5G53680 species:3702 "Arabidopsis thaliana"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
            acid binding" evidence=IEA;ISS] [GO:0003723 "RNA binding"
            evidence=ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0008150
            "biological_process" evidence=ND] [GO:0000398 "mRNA splicing, via
            spliceosome" evidence=RCA] [GO:0006457 "protein folding"
            evidence=RCA] [GO:0009408 "response to heat" evidence=RCA]
            [GO:0009644 "response to high light intensity" evidence=RCA]
            [GO:0042542 "response to hydrogen peroxide" evidence=RCA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724 EMBL:AB017066
            HSSP:Q61474 IPI:IPI00517619 RefSeq:NP_200179.1 UniGene:At.55530
            ProteinModelPortal:Q9FI08 SMR:Q9FI08 EnsemblPlants:AT5G53680.1
            GeneID:835449 KEGG:ath:AT5G53680 TAIR:At5g53680
            HOGENOM:HOG000152479 InParanoid:Q9FI08 PhylomeDB:Q9FI08
            ProtClustDB:CLSN2916322 Genevestigator:Q9FI08 Uniprot:Q9FI08
        Length = 169

 Score = 126 (49.4 bits), Expect = 1.0e-07, P = 1.0e-07
 Identities = 30/88 (34%), Positives = 51/88 (57%)

Query:   187 KLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKE 246
             K++V GL + T ++ L   F+ FGE++ V ++ D+ + RS+GY F+ +   E+A+ A K+
Sbjct:    14 KIYVGGLPWTTRKEGLINFFKRFGEIIHVNVVCDRETDRSQGYGFVTFKDAESATRACKD 73

Query:   247 MN----GKIINGWMIVVDVAKTTPKYSR 270
              N    G+I N  +  V  AK  P  S+
Sbjct:    74 PNPTIEGRITNCKLAFVG-AKVKPNQSQ 100


>UNIPROTKB|D4A2D2 [details] [associations]
            symbol:D4A2D2 "Uncharacterized protein" species:10116
            "Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 OrthoDB:EOG4HQDKF
            InterPro:IPR021662 Pfam:PF11627 GeneTree:ENSGT00550000074566
            IPI:IPI00559583 ProteinModelPortal:D4A2D2
            Ensembl:ENSRNOT00000032337 Uniprot:D4A2D2
        Length = 262

 Score = 142 (55.0 bits), Expect = 1.1e-07, P = 1.1e-07
 Identities = 31/82 (37%), Positives = 51/82 (62%)

Query:   170 MVPSDSSEASPTQIKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGY 229
             M  S+S +  P Q++  KLF+ GL+F T++++LR+ FE +G L E  ++ D  +KRS+G+
Sbjct:     1 MSKSESPK-EPEQLR--KLFIGGLTFETTDESLRSHFEQWGTLTECVVMRDPNTKRSRGF 57

Query:   230 AFIEYTTEEAASAALKEMNGKI 251
              F+ Y T E   AA+     K+
Sbjct:    58 GFVTYATVEEVDAAMNARPHKV 79


>TAIR|locus:2086325 [details] [associations]
            symbol:AT3G15010 species:3702 "Arabidopsis thaliana"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
            acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
            [GO:0005730 "nucleolus" evidence=IDA] [GO:0005634 "nucleus"
            evidence=IDA] [GO:0006952 "defense response" evidence=IMP]
            [GO:0008219 "cell death" evidence=IMP] [GO:0009693 "ethylene
            biosynthetic process" evidence=IMP] [GO:0010150 "leaf senescence"
            evidence=IMP] [GO:0005829 "cytosol" evidence=RCA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0009693
            GO:GO:0006952 GO:GO:0005730 GO:GO:0000166 GO:GO:0008219
            Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0010150 EMBL:AP000370
            HSSP:P09651 KO:K12741 eggNOG:NOG300400 EMBL:AY063846 EMBL:AY091228
            EMBL:AK316731 IPI:IPI00519744 RefSeq:NP_188119.1 RefSeq:NP_974317.1
            UniGene:At.27179 ProteinModelPortal:Q9LKA4 SMR:Q9LKA4 IntAct:Q9LKA4
            PaxDb:Q9LKA4 PRIDE:Q9LKA4 EnsemblPlants:AT3G15010.1
            EnsemblPlants:AT3G15010.2 GeneID:820730 KEGG:ath:AT3G15010
            TAIR:At3g15010 HOGENOM:HOG000090575 InParanoid:Q9LKA4 OMA:MGAQYGG
            PhylomeDB:Q9LKA4 ProtClustDB:CLSN2685088 ArrayExpress:Q9LKA4
            Genevestigator:Q9LKA4 Uniprot:Q9LKA4
        Length = 404

 Score = 146 (56.5 bits), Expect = 1.2e-07, P = 1.2e-07
 Identities = 31/82 (37%), Positives = 52/82 (63%)

Query:   181 TQIKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAA 240
             + I  +KLF+ GL+  T+ + LR+ F  +G+L E  +I+DK++ +SKGY F+ +   + A
Sbjct:    70 SDISQRKLFIRGLAADTTTEGLRSLFSSYGDLEEAIVILDKVTGKSKGYGFVTFMHVDGA 129

Query:   241 SAALKEMNGKIINGWMIVVDVA 262
               ALKE + KI +G + V  +A
Sbjct:   130 LLALKEPSKKI-DGRVTVTQLA 150


>UNIPROTKB|Q66II8 [details] [associations]
            symbol:snrnp70 "U1 small nuclear ribonucleoprotein 70 kDa"
            species:8364 "Xenopus (Silurana) tropicalis" [GO:0000398 "mRNA
            splicing, via spliceosome" evidence=ISS] [GO:0003723 "RNA binding"
            evidence=ISS] [GO:0005681 "spliceosomal complex" evidence=ISS]
            [GO:0043484 "regulation of RNA splicing" evidence=ISS]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0000166 GO:GO:0016607 Gene3D:3.30.70.330
            GO:GO:0005681 GO:GO:0003723 GO:GO:0060218 GO:GO:0043484
            GO:GO:0000398 eggNOG:COG0724 KO:K11093 InterPro:IPR022023
            Pfam:PF12220 CTD:6625 GeneTree:ENSGT00530000063750
            OrthoDB:EOG4CJVJ7 HOVERGEN:HBG012300 EMBL:CR760195 EMBL:BC081331
            RefSeq:NP_001008126.1 UniGene:Str.26779 ProteinModelPortal:Q66II8
            STRING:Q66II8 Ensembl:ENSXETT00000049555 GeneID:493488
            KEGG:xtr:493488 Xenbase:XB-GENE-992818 InParanoid:Q66II8
            OMA:RHDKYDR Bgee:Q66II8 Uniprot:Q66II8
        Length = 471

 Score = 147 (56.8 bits), Expect = 1.2e-07, P = 1.2e-07
 Identities = 37/104 (35%), Positives = 58/104 (55%)

Query:   172 PSDSSEASPTQIKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAF 231
             P +   A     KT  LFV  +++ T+E  LR  FE +G +  + ++ +K S + +GYAF
Sbjct:    91 PHNDQNAQGDAFKT--LFVARVNYDTTESKLRREFEVYGPIKRIHMVYNKRSGKPRGYAF 148

Query:   232 IEYTTEEAASAALKEMNGKIINGWMIVVDVAKTTPKYSRG-RPR 274
             IEY  E    +A K  +GK I+G  ++VDV +   +  +G RPR
Sbjct:   149 IEYEHERDMHSAYKHADGKKIDGRRVLVDVERG--RTVKGWRPR 190


>UNIPROTKB|F1P336 [details] [associations]
            symbol:NCL "Nucleolin" species:9031 "Gallus gallus"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
            acid binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00550000074656
            EMBL:AADN02020638 EMBL:AADN02020639 IPI:IPI00680028
            Ensembl:ENSGALT00000033265 ArrayExpress:F1P336 Uniprot:F1P336
        Length = 689

 Score = 149 (57.5 bits), Expect = 1.3e-07, P = 1.3e-07
 Identities = 33/88 (37%), Positives = 55/88 (62%)

Query:   184 KTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAA 243
             ++K LFV GLS  T+E+TLR +FEG    +  +I+ D+ +  SKG+ F+++++ E A AA
Sbjct:   549 QSKTLFVRGLSEDTTEETLRESFEGS---ISARIVTDRDTGSSKGFGFVDFSSPEDAKAA 605

Query:   244 LKEMNGKIINGWMIVVDVAKTTPKYSRG 271
              + M    I+G  + +D AK   ++ RG
Sbjct:   606 KEAMEDGEIDGNKVTLDFAKPKGEFQRG 633


>UNIPROTKB|F1NU40 [details] [associations]
            symbol:NCL "Nucleolin" species:9031 "Gallus gallus"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0001525
            "angiogenesis" evidence=IEA] [GO:0003723 "RNA binding"
            evidence=IEA] [GO:0005654 "nucleoplasm" evidence=IEA] [GO:0005730
            "nucleolus" evidence=IEA] [GO:0005938 "cell cortex" evidence=IEA]
            [GO:0008022 "protein C-terminus binding" evidence=IEA] [GO:0030529
            "ribonucleoprotein complex" evidence=IEA] [GO:0042162 "telomeric
            DNA binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005938
            GO:GO:0005654 GO:GO:0005730 Gene3D:1.25.10.10 InterPro:IPR011989
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0030529 GO:GO:0042162
            GeneTree:ENSGT00550000074656 IPI:IPI00577202 OMA:ENAMEIR
            EMBL:AADN02020638 EMBL:AADN02020639 Ensembl:ENSGALT00000012486
            ArrayExpress:F1NU40 Uniprot:F1NU40
        Length = 691

 Score = 149 (57.5 bits), Expect = 1.3e-07, P = 1.3e-07
 Identities = 33/88 (37%), Positives = 55/88 (62%)

Query:   184 KTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAA 243
             ++K LFV GLS  T+E+TLR +FEG    +  +I+ D+ +  SKG+ F+++++ E A AA
Sbjct:   551 QSKTLFVRGLSEDTTEETLRESFEGS---ISARIVTDRDTGSSKGFGFVDFSSPEDAKAA 607

Query:   244 LKEMNGKIINGWMIVVDVAKTTPKYSRG 271
              + M    I+G  + +D AK   ++ RG
Sbjct:   608 KEAMEDGEIDGNKVTLDFAKPKGEFQRG 635


>UNIPROTKB|P15771 [details] [associations]
            symbol:NCL "Nucleolin" species:9031 "Gallus gallus"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003677 "DNA
            binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
            [GO:0005730 "nucleolus" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0005730 Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0000166
            GO:GO:0003677 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
            HOVERGEN:HBG002295 KO:K11294 EMBL:X17199 EMBL:M21791
            IPI:IPI00577202 PIR:S08414 RefSeq:NP_990596.1 UniGene:Gga.3663
            ProteinModelPortal:P15771 SMR:P15771 STRING:P15771 PRIDE:P15771
            GeneID:396201 KEGG:gga:396201 CTD:4691 HOGENOM:HOG000113885
            InParanoid:P15771 NextBio:20816253 Uniprot:P15771
        Length = 694

 Score = 149 (57.5 bits), Expect = 1.3e-07, P = 1.3e-07
 Identities = 33/88 (37%), Positives = 55/88 (62%)

Query:   184 KTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAA 243
             ++K LFV GLS  T+E+TLR +FEG    +  +I+ D+ +  SKG+ F+++++ E A AA
Sbjct:   551 QSKTLFVRGLSEDTTEETLRESFEGS---ISARIVTDRDTGSSKGFGFVDFSSPEDAKAA 607

Query:   244 LKEMNGKIINGWMIVVDVAKTTPKYSRG 271
              + M    I+G  + +D AK   ++ RG
Sbjct:   608 KEAMEDGEIDGNKVTLDFAKPKGEFQRG 635


>WB|WBGene00004701 [details] [associations]
            symbol:rsp-4 species:6239 "Caenorhabditis elegans"
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0040010
            "positive regulation of growth rate" evidence=IMP] [GO:0002009
            "morphogenesis of an epithelium" evidence=IMP] [GO:0010171 "body
            morphogenesis" evidence=IMP] [GO:0009790 "embryo development"
            evidence=IMP] [GO:0001703 "gastrulation with mouth forming first"
            evidence=IMP] [GO:0040011 "locomotion" evidence=IMP] [GO:0009792
            "embryo development ending in birth or egg hatching" evidence=IMP]
            [GO:0042127 "regulation of cell proliferation" evidence=IMP]
            [GO:0040020 "regulation of meiosis" evidence=IMP] [GO:0005634
            "nucleus" evidence=IDA] [GO:0000398 "mRNA splicing, via
            spliceosome" evidence=ISS] [GO:0003723 "RNA binding" evidence=ISS]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0005634 GO:GO:0009792 GO:GO:0002009
            GO:GO:0040010 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0010171
            GO:GO:0040011 GO:GO:0003723 GO:GO:0042127 GO:GO:0000398
            GO:GO:0040020 EMBL:FO081042 GO:GO:0001703 PIR:T15917
            RefSeq:NP_495013.1 RefSeq:NP_495014.1 UniGene:Cel.5535
            ProteinModelPortal:Q09511 SMR:Q09511 DIP:DIP-26638N
            MINT:MINT-1120954 STRING:Q09511 PaxDb:Q09511 PRIDE:Q09511
            EnsemblMetazoa:EEED8.7a GeneID:173915 KEGG:cel:CELE_EEED8.7
            UCSC:EEED8.7a CTD:173915 WormBase:EEED8.7a WormBase:EEED8.7b
            eggNOG:NOG254270 GeneTree:ENSGT00700000104403 HOGENOM:HOG000276233
            InParanoid:Q09511 KO:K12891 OMA:YDATEYD NextBio:881647
            Uniprot:Q09511
        Length = 196

 Score = 135 (52.6 bits), Expect = 1.3e-07, P = 1.3e-07
 Identities = 32/95 (33%), Positives = 51/95 (53%)

Query:   178 ASPTQIKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTE 237
             A+P       L +  LS+ T+   LR  FE +G++ +V I  DK S++SKG+ F+ +   
Sbjct:    11 AAPDINGLTSLKIDNLSYQTTPNDLRRTFERYGDIGDVHIPRDKYSRQSKGFGFVRFYER 70

Query:   238 EAASAALKEMNGKIINGWMIVVDVAK-TTPKYSRG 271
               A  AL   +GK+++G  + V +AK   P   RG
Sbjct:    71 RDAEHALDRTDGKLVDGRELRVTLAKYDRPSDERG 105


>UNIPROTKB|Q09511 [details] [associations]
            symbol:rsp-4 "Probable splicing factor,
            arginine/serine-rich 4" species:6239 "Caenorhabditis elegans"
            [GO:0005634 "nucleus" evidence=IDA] [GO:0003723 "RNA binding"
            evidence=NAS] [GO:0000398 "mRNA splicing, via spliceosome"
            evidence=NAS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0009792
            GO:GO:0002009 GO:GO:0040010 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0010171 GO:GO:0040011 GO:GO:0003723 GO:GO:0042127
            GO:GO:0000398 GO:GO:0040020 EMBL:FO081042 GO:GO:0001703 PIR:T15917
            RefSeq:NP_495013.1 RefSeq:NP_495014.1 UniGene:Cel.5535
            ProteinModelPortal:Q09511 SMR:Q09511 DIP:DIP-26638N
            MINT:MINT-1120954 STRING:Q09511 PaxDb:Q09511 PRIDE:Q09511
            EnsemblMetazoa:EEED8.7a GeneID:173915 KEGG:cel:CELE_EEED8.7
            UCSC:EEED8.7a CTD:173915 WormBase:EEED8.7a WormBase:EEED8.7b
            eggNOG:NOG254270 GeneTree:ENSGT00700000104403 HOGENOM:HOG000276233
            InParanoid:Q09511 KO:K12891 OMA:YDATEYD NextBio:881647
            Uniprot:Q09511
        Length = 196

 Score = 135 (52.6 bits), Expect = 1.3e-07, P = 1.3e-07
 Identities = 32/95 (33%), Positives = 51/95 (53%)

Query:   178 ASPTQIKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTE 237
             A+P       L +  LS+ T+   LR  FE +G++ +V I  DK S++SKG+ F+ +   
Sbjct:    11 AAPDINGLTSLKIDNLSYQTTPNDLRRTFERYGDIGDVHIPRDKYSRQSKGFGFVRFYER 70

Query:   238 EAASAALKEMNGKIINGWMIVVDVAK-TTPKYSRG 271
               A  AL   +GK+++G  + V +AK   P   RG
Sbjct:    71 RDAEHALDRTDGKLVDGRELRVTLAKYDRPSDERG 105


>POMBASE|SPAC140.02 [details] [associations]
            symbol:gar2 "nucleolar protein required for rRNA
            processing" species:4896 "Schizosaccharomyces pombe" [GO:0003723
            "RNA binding" evidence=IEA] [GO:0005730 "nucleolus" evidence=IDA]
            [GO:0005732 "small nucleolar ribonucleoprotein complex"
            evidence=ISS] [GO:0006364 "rRNA processing" evidence=IMP]
            [GO:0007000 "nucleolus organization" evidence=IMP] [GO:0042254
            "ribosome biogenesis" evidence=IMP] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            PomBase:SPAC140.02 EMBL:CU329670 GO:GO:0005730
            GenomeReviews:CU329670_GR GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003723 GO:GO:0006364 eggNOG:COG0724 GO:GO:0007000
            GO:GO:0005732 EMBL:Z48166 PIR:S55785 RefSeq:NP_593531.1
            ProteinModelPortal:P41891 STRING:P41891 PRIDE:P41891
            EnsemblFungi:SPAC140.02.1 GeneID:2542869 KEGG:spo:SPAC140.02
            KO:K11294 OMA:VITDRES OrthoDB:EOG422DTZ NextBio:20803909
            Uniprot:P41891
        Length = 500

 Score = 147 (56.8 bits), Expect = 1.3e-07, P = 1.3e-07
 Identities = 39/137 (28%), Positives = 67/137 (48%)

Query:   132 DDECAQELTGVPGVLSVQPDENFGSENKDYGGNNLQNSMVPSDSSEASPTQI--KTKKLF 189
             D E + + +   G      D    S ++D      + +     +    P+Q   +T  +F
Sbjct:   207 DSESSSDSSSESGDSDSSSDSESESSSEDEKKRKAEPASEERPAKITKPSQDSNETCTVF 266

Query:   190 VTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNG 249
             V  LS+   ++ L   FE +G +V  ++IMD  S RSKGY ++++ T EAA AA+     
Sbjct:   267 VGRLSWNVDDQWLGQEFEEYGTIVGARVIMDGQSGRSKGYGYVDFETPEAAKAAVAANGT 326

Query:   250 KIINGWMIVVDVAKTTP 266
             K I+G M+ +D++   P
Sbjct:   327 KEIDGRMVNLDLSNPRP 343


>UNIPROTKB|E9PK21 [details] [associations]
            symbol:PPIE "Peptidyl-prolyl cis-trans isomerase E"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0000166 EMBL:AL035404 Gene3D:3.30.70.330
            GO:GO:0003676 EMBL:AL033527 EMBL:AL049824 HGNC:HGNC:9258
            ChiTaRS:PPIE IPI:IPI00985437 ProteinModelPortal:E9PK21 SMR:E9PK21
            Ensembl:ENST00000470213 ArrayExpress:E9PK21 Bgee:E9PK21
            Uniprot:E9PK21
        Length = 208

 Score = 137 (53.3 bits), Expect = 1.3e-07, P = 1.3e-07
 Identities = 33/91 (36%), Positives = 55/91 (60%)

Query:   185 TKK-LFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAA 243
             TK+ L+V GL+    +K L AAF  FG++ +++I +D  +++ +G+AF+E+   E A+AA
Sbjct:     4 TKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAA 63

Query:   244 LKEMNGKIINGWMIVVDVAKTTP-KYSRGRP 273
             +  MN   + G  I V++AK    K    RP
Sbjct:    64 IDNMNESELFGRTIRVNLAKPMRIKEGSSRP 94


>UNIPROTKB|Q3ZBJ1 [details] [associations]
            symbol:NCBP2 "Nuclear cap-binding protein subunit 2"
            species:9913 "Bos taurus" [GO:0045292 "mRNA cis splicing, via
            spliceosome" evidence=ISS] [GO:0006408 "snRNA export from nucleus"
            evidence=ISS] [GO:0008380 "RNA splicing" evidence=ISS] [GO:0046833
            "positive regulation of RNA export from nucleus" evidence=ISS]
            [GO:0006446 "regulation of translational initiation" evidence=ISS]
            [GO:0005654 "nucleoplasm" evidence=ISS] [GO:0000340 "RNA
            7-methylguanosine cap binding" evidence=ISS] [GO:0005737
            "cytoplasm" evidence=ISS] [GO:0000184 "nuclear-transcribed mRNA
            catabolic process, nonsense-mediated decay" evidence=ISS]
            [GO:0005845 "mRNA cap binding complex" evidence=ISS] [GO:0006370
            "7-methylguanosine mRNA capping" evidence=ISS] [GO:0051028 "mRNA
            transport" evidence=IEA] [GO:0031047 "gene silencing by RNA"
            evidence=IEA] [GO:0005846 "nuclear cap binding complex"
            evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 InterPro:IPR027157
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
            GO:GO:0005654 GO:GO:0000184 GO:GO:0000166 GO:GO:0006446
            Gene3D:3.30.70.330 GO:GO:0031047 GO:GO:0005845 GO:GO:0000340
            GO:GO:0051028 eggNOG:COG0724 GO:GO:0006370 GO:GO:0045292
            HOGENOM:HOG000217589 HOVERGEN:HBG052581 OrthoDB:EOG470TJG
            PANTHER:PTHR18847 KO:K12883 EMBL:BC103267 IPI:IPI00687118
            RefSeq:NP_001029568.1 UniGene:Bt.49382 ProteinModelPortal:Q3ZBJ1
            SMR:Q3ZBJ1 STRING:Q3ZBJ1 PRIDE:Q3ZBJ1 Ensembl:ENSBTAT00000011684
            GeneID:510872 KEGG:bta:510872 CTD:22916
            GeneTree:ENSGT00390000003197 InParanoid:Q3ZBJ1 OMA:RQDYDPA
            NextBio:20869659 GO:GO:0046833 GO:GO:0006408 Uniprot:Q3ZBJ1
        Length = 156

 Score = 125 (49.1 bits), Expect = 1.3e-07, P = 1.3e-07
 Identities = 31/102 (30%), Positives = 55/102 (53%)

Query:   174 DSSEASPTQIKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIE 233
             D+ E      K+  L+V  LSFYT+E+ +   F   G++ ++ + +DK+ K + G+ F+E
Sbjct:    28 DNEEQEKLLKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVE 87

Query:   234 YTTEEAASAALKEMNGKIINGWMIVVDVA---KTTPKYSRGR 272
             Y +   A  A++ +NG  ++  +I  D     K   +Y RGR
Sbjct:    88 YYSRADAENAMRYINGTRLDDRIIRTDWDAGFKEGRQYGRGR 129


>UNIPROTKB|E2RFC9 [details] [associations]
            symbol:NCBP2 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0045292 "mRNA cis splicing, via spliceosome"
            evidence=IEA] [GO:0006446 "regulation of translational initiation"
            evidence=IEA] [GO:0006370 "7-methylguanosine mRNA capping"
            evidence=IEA] [GO:0005845 "mRNA cap binding complex" evidence=IEA]
            [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005654 "nucleoplasm"
            evidence=IEA] [GO:0000340 "RNA 7-methylguanosine cap binding"
            evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
            process, nonsense-mediated decay" evidence=IEA] [GO:0005846
            "nuclear cap binding complex" evidence=IEA] [GO:0000166 "nucleotide
            binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
            InterPro:IPR027157 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0005737 GO:GO:0005654 GO:GO:0000184 GO:GO:0000166
            GO:GO:0006446 Gene3D:3.30.70.330 GO:GO:0005845 GO:GO:0000340
            GO:GO:0006370 PANTHER:PTHR18847 KO:K12883 CTD:22916
            GeneTree:ENSGT00390000003197 OMA:RQDYDPA EMBL:AAEX03017103
            RefSeq:XP_535779.1 ProteinModelPortal:E2RFC9 SMR:E2RFC9
            PRIDE:E2RFC9 Ensembl:ENSCAFT00000020794 GeneID:478603
            KEGG:cfa:478603 NextBio:20853918 Uniprot:E2RFC9
        Length = 156

 Score = 125 (49.1 bits), Expect = 1.3e-07, P = 1.3e-07
 Identities = 31/102 (30%), Positives = 55/102 (53%)

Query:   174 DSSEASPTQIKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIE 233
             D+ E      K+  L+V  LSFYT+E+ +   F   G++ ++ + +DK+ K + G+ F+E
Sbjct:    28 DNEEQEKLLKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVE 87

Query:   234 YTTEEAASAALKEMNGKIINGWMIVVDVA---KTTPKYSRGR 272
             Y +   A  A++ +NG  ++  +I  D     K   +Y RGR
Sbjct:    88 YYSRADAENAMRYINGTRLDDRIIRTDWDAGFKEGRQYGRGR 129


>UNIPROTKB|P52298 [details] [associations]
            symbol:NCBP2 "Nuclear cap-binding protein subunit 2"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0005846 "nuclear cap binding complex"
            evidence=IEA] [GO:0031047 "gene silencing by RNA" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IDA;NAS] [GO:0006408 "snRNA export
            from nucleus" evidence=ISS;NAS] [GO:0000340 "RNA 7-methylguanosine
            cap binding" evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
            [GO:0000184 "nuclear-transcribed mRNA catabolic process,
            nonsense-mediated decay" evidence=IMP;IDA;TAS] [GO:0006370
            "7-methylguanosine mRNA capping" evidence=IDA;TAS] [GO:0005845
            "mRNA cap binding complex" evidence=IDA] [GO:0005654 "nucleoplasm"
            evidence=IDA;TAS] [GO:0006446 "regulation of translational
            initiation" evidence=IDA] [GO:0046833 "positive regulation of RNA
            export from nucleus" evidence=ISS] [GO:0008380 "RNA splicing"
            evidence=ISS;TAS] [GO:0005515 "protein binding" evidence=IPI]
            [GO:0003723 "RNA binding" evidence=IDA] [GO:0000339 "RNA cap
            binding" evidence=NAS] [GO:0045292 "mRNA cis splicing, via
            spliceosome" evidence=IDA] [GO:0000387 "spliceosomal snRNP
            assembly" evidence=TAS] [GO:0000398 "mRNA splicing, via
            spliceosome" evidence=TAS] [GO:0005829 "cytosol" evidence=TAS]
            [GO:0006366 "transcription from RNA polymerase II promoter"
            evidence=TAS] [GO:0006368 "transcription elongation from RNA
            polymerase II promoter" evidence=TAS] [GO:0006369 "termination of
            RNA polymerase II transcription" evidence=TAS] [GO:0006397 "mRNA
            processing" evidence=TAS] [GO:0006406 "mRNA export from nucleus"
            evidence=TAS] [GO:0008334 "histone mRNA metabolic process"
            evidence=TAS] [GO:0010467 "gene expression" evidence=TAS]
            [GO:0016032 "viral reproduction" evidence=TAS] [GO:0016070 "RNA
            metabolic process" evidence=TAS] [GO:0016071 "mRNA metabolic
            process" evidence=TAS] [GO:0031124 "mRNA 3'-end processing"
            evidence=TAS] [GO:0034660 "ncRNA metabolic process" evidence=TAS]
            [GO:0050434 "positive regulation of viral transcription"
            evidence=TAS] [GO:0005730 "nucleolus" evidence=IDA]
            Reactome:REACT_71 Reactome:REACT_21257 InterPro:IPR000504
            InterPro:IPR012677 InterPro:IPR027157 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0005829 Reactome:REACT_116125 GO:GO:0005654
            GO:GO:0016032 GO:GO:0000184 GO:GO:0000166 GO:GO:0006446
            Reactome:REACT_1675 Gene3D:3.30.70.330 GO:GO:0006368 GO:GO:0006406
            GO:GO:0031047 GO:GO:0005845 GO:GO:0000340 GO:GO:0000387
            GO:GO:0034660 EMBL:CH471191 Reactome:REACT_1788 eggNOG:COG0724
            GO:GO:0006370 GO:GO:0050434 GO:GO:0045292 GO:GO:0006369
            GO:GO:0031124 Reactome:REACT_78 PDB:3FEX PDB:3FEY PDBsum:3FEX
            PDBsum:3FEY GO:GO:0008334 HOGENOM:HOG000217589 HOVERGEN:HBG052581
            PANTHER:PTHR18847 PDB:1H2T PDB:1H2U PDB:1H2V PDB:1H6K PDB:1N52
            PDB:1N54 PDBsum:1H2T PDBsum:1H2U PDBsum:1H2V PDBsum:1H6K
            PDBsum:1N52 PDBsum:1N54 KO:K12883 CTD:22916 OMA:RQDYDPA
            GO:GO:0046833 GO:GO:0006408 EMBL:X84157 EMBL:D59253 EMBL:AK297506
            EMBL:AK315903 EMBL:AK316601 EMBL:AY644767 EMBL:BT006842
            EMBL:BC001255 IPI:IPI00183500 IPI:IPI00927860 PIR:I37222 PIR:S60109
            RefSeq:NP_001036005.1 RefSeq:NP_031388.2 UniGene:Hs.591671
            DisProt:DP00393 ProteinModelPortal:P52298 SMR:P52298 DIP:DIP-33246N
            IntAct:P52298 MINT:MINT-248711 STRING:P52298 PhosphoSite:P52298
            DMDM:1705651 PaxDb:P52298 PRIDE:P52298 DNASU:22916
            Ensembl:ENST00000321256 Ensembl:ENST00000452404 GeneID:22916
            KEGG:hsa:22916 UCSC:uc003fxb.1 UCSC:uc011btz.1
            GeneCards:GC03M196662 HGNC:HGNC:7659 HPA:HPA044850 MIM:605133
            neXtProt:NX_P52298 PharmGKB:PA31462 InParanoid:P52298
            PhylomeDB:P52298 ChiTaRS:NCBP2 EvolutionaryTrace:P52298
            GenomeRNAi:22916 NextBio:43603 ArrayExpress:P52298 Bgee:P52298
            CleanEx:HS_NCBP2 Genevestigator:P52298 GermOnline:ENSG00000114503
            Uniprot:P52298
        Length = 156

 Score = 125 (49.1 bits), Expect = 1.3e-07, P = 1.3e-07
 Identities = 31/102 (30%), Positives = 55/102 (53%)

Query:   174 DSSEASPTQIKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIE 233
             D+ E      K+  L+V  LSFYT+E+ +   F   G++ ++ + +DK+ K + G+ F+E
Sbjct:    28 DNEEQEKLLKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVE 87

Query:   234 YTTEEAASAALKEMNGKIINGWMIVVDVA---KTTPKYSRGR 272
             Y +   A  A++ +NG  ++  +I  D     K   +Y RGR
Sbjct:    88 YYSRADAENAMRYINGTRLDDRIIRTDWDAGFKEGRQYGRGR 129


>UNIPROTKB|F2Z5Q9 [details] [associations]
            symbol:NCBP2 "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0045292 "mRNA cis splicing, via spliceosome"
            evidence=IEA] [GO:0005846 "nuclear cap binding complex"
            evidence=IEA] [GO:0000339 "RNA cap binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 InterPro:IPR027157 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            PANTHER:PTHR18847 KO:K12883 CTD:22916 GeneTree:ENSGT00390000003197
            OMA:RQDYDPA EMBL:CU862047 RefSeq:XP_003358812.2 UniGene:Ssc.56609
            ProteinModelPortal:F2Z5Q9 SMR:F2Z5Q9 PRIDE:F2Z5Q9
            Ensembl:ENSSSCT00000024784 GeneID:100156513 KEGG:ssc:100156513
            Uniprot:F2Z5Q9
        Length = 156

 Score = 125 (49.1 bits), Expect = 1.3e-07, P = 1.3e-07
 Identities = 31/102 (30%), Positives = 55/102 (53%)

Query:   174 DSSEASPTQIKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIE 233
             D+ E      K+  L+V  LSFYT+E+ +   F   G++ ++ + +DK+ K + G+ F+E
Sbjct:    28 DNEEQEKLLKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVE 87

Query:   234 YTTEEAASAALKEMNGKIINGWMIVVDVA---KTTPKYSRGR 272
             Y +   A  A++ +NG  ++  +I  D     K   +Y RGR
Sbjct:    88 YYSRADAENAMRYINGTRLDDRIIRTDWDAGFKEGRQYGRGR 129


>UNIPROTKB|A2SW84 [details] [associations]
            symbol:ncbp2 "Nuclear cap-binding protein subunit 2"
            species:119488 "Siniperca chuatsi" [GO:0000340 "RNA
            7-methylguanosine cap binding" evidence=ISS] [GO:0006408 "snRNA
            export from nucleus" evidence=ISS] [GO:0008380 "RNA splicing"
            evidence=ISS] [GO:0045292 "mRNA cis splicing, via spliceosome"
            evidence=ISS] [GO:0046833 "positive regulation of RNA export from
            nucleus" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
            InterPro:IPR027157 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0005634 GO:GO:0005737 GO:GO:0006417 GO:GO:0000184
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0031047 GO:GO:0000340
            GO:GO:0051028 GO:GO:0006370 GO:GO:0045292 PANTHER:PTHR18847
            GO:GO:0046833 GO:GO:0006408 EMBL:DQ359156 ProteinModelPortal:A2SW84
            SMR:A2SW84 Uniprot:A2SW84
        Length = 165

 Score = 125 (49.1 bits), Expect = 1.3e-07, P = 1.3e-07
 Identities = 29/88 (32%), Positives = 49/88 (55%)

Query:   188 LFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEM 247
             L+V  LSFYT+E+ +   F   G++  + I +DK+ K + G+ F+EY T   A  A++ +
Sbjct:    41 LYVGNLSFYTTEEQVHELFSKSGDVKRIIIGLDKVKKTACGFCFVEYYTRAGAENAMRFI 100

Query:   248 NGKIINGWMIVVDVA---KTTPKYSRGR 272
             NG  ++  +I  D     K   +Y RG+
Sbjct:   101 NGTRLDDRIIRADWDAGFKEGRQYGRGK 128


>UNIPROTKB|Q6DES0 [details] [associations]
            symbol:ncbp2 "Nuclear cap-binding protein subunit 2"
            species:8364 "Xenopus (Silurana) tropicalis" [GO:0000340 "RNA
            7-methylguanosine cap binding" evidence=ISS] [GO:0006408 "snRNA
            export from nucleus" evidence=ISS] [GO:0008380 "RNA splicing"
            evidence=ISS] [GO:0045292 "mRNA cis splicing, via spliceosome"
            evidence=ISS] [GO:0046833 "positive regulation of RNA export from
            nucleus" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
            InterPro:IPR027157 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0005634 GO:GO:0005737 GO:GO:0006417 GO:GO:0000184
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0031047 GO:GO:0000340
            GO:GO:0051028 eggNOG:COG0724 GO:GO:0006370 GO:GO:0045292
            HOGENOM:HOG000217589 OrthoDB:EOG470TJG PANTHER:PTHR18847
            HSSP:P52298 KO:K12883 CTD:22916 GO:GO:0046833 GO:GO:0006408
            EMBL:CR761328 EMBL:BC077024 RefSeq:NP_001006879.1 UniGene:Str.170
            ProteinModelPortal:Q6DES0 SMR:Q6DES0 STRING:Q6DES0 PRIDE:Q6DES0
            GeneID:448671 KEGG:xtr:448671 Xenbase:XB-GENE-1005786
            InParanoid:Q6DES0 Bgee:Q6DES0 Uniprot:Q6DES0
        Length = 153

 Score = 125 (49.1 bits), Expect = 1.3e-07, P = 1.3e-07
 Identities = 29/88 (32%), Positives = 50/88 (56%)

Query:   188 LFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEM 247
             L+V  LSFYT+E+ +   F   G++ ++ + +DKI K + G+ F+EY T   A  A++ +
Sbjct:    39 LYVGNLSFYTTEEQIHELFSKSGDVKKIVMGLDKIKKTACGFCFVEYYTRTDAEQAMRFI 98

Query:   248 NGKIINGWMIVVDVA---KTTPKYSRGR 272
             NG  ++  +I  D     K   +Y RG+
Sbjct:    99 NGTRLDDRIIRTDWDAGFKEGRQYGRGK 126


>MGI|MGI:1915342 [details] [associations]
            symbol:Ncbp2 "nuclear cap binding protein subunit 2"
            species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
            process, nonsense-mediated decay" evidence=ISO] [GO:0000340 "RNA
            7-methylguanosine cap binding" evidence=ISO] [GO:0003676 "nucleic
            acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
            [GO:0005634 "nucleus" evidence=ISO] [GO:0005654 "nucleoplasm"
            evidence=ISO] [GO:0005737 "cytoplasm" evidence=ISO] [GO:0005845
            "mRNA cap binding complex" evidence=ISO] [GO:0006370
            "7-methylguanosine mRNA capping" evidence=ISO] [GO:0006397 "mRNA
            processing" evidence=IEA] [GO:0006417 "regulation of translation"
            evidence=IEA] [GO:0006446 "regulation of translational initiation"
            evidence=ISO] [GO:0006810 "transport" evidence=IEA] [GO:0008380
            "RNA splicing" evidence=IEA] [GO:0031047 "gene silencing by RNA"
            evidence=IEA] [GO:0045292 "mRNA cis splicing, via spliceosome"
            evidence=ISO] [GO:0051028 "mRNA transport" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 InterPro:IPR027157
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 MGI:MGI:1915342
            GO:GO:0005737 GO:GO:0005654 GO:GO:0000184 GO:GO:0000166
            GO:GO:0006446 Gene3D:3.30.70.330 EMBL:CH466521 GO:GO:0031047
            GO:GO:0005845 GO:GO:0000340 GO:GO:0051028 eggNOG:COG0724
            GO:GO:0006370 GO:GO:0045292 HOGENOM:HOG000217589 HOVERGEN:HBG052581
            OrthoDB:EOG470TJG PANTHER:PTHR18847 KO:K12883 CTD:22916
            GeneTree:ENSGT00390000003197 OMA:RQDYDPA GO:GO:0046833
            GO:GO:0006408 EMBL:AK008980 EMBL:AK012659 EMBL:AK077841
            EMBL:AK147027 EMBL:BC118926 IPI:IPI00132019 RefSeq:NP_080830.1
            UniGene:Mm.290027 ProteinModelPortal:Q9CQ49 SMR:Q9CQ49
            STRING:Q9CQ49 PhosphoSite:Q9CQ49 PaxDb:Q9CQ49 PRIDE:Q9CQ49
            Ensembl:ENSMUST00000023460 GeneID:68092 KEGG:mmu:68092
            UCSC:uc007yxz.2 InParanoid:Q0VF93 NextBio:326400 Bgee:Q9CQ49
            CleanEx:MM_NCBP2 Genevestigator:Q9CQ49
            GermOnline:ENSMUSG00000022774 Uniprot:Q9CQ49
        Length = 156

 Score = 125 (49.1 bits), Expect = 1.3e-07, P = 1.3e-07
 Identities = 31/102 (30%), Positives = 55/102 (53%)

Query:   174 DSSEASPTQIKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIE 233
             D+ E      K+  L+V  LSFYT+E+ +   F   G++ ++ + +DK+ K + G+ F+E
Sbjct:    28 DNEEQEKLLKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVE 87

Query:   234 YTTEEAASAALKEMNGKIINGWMIVVDVA---KTTPKYSRGR 272
             Y +   A  A++ +NG  ++  +I  D     K   +Y RGR
Sbjct:    88 YYSRADAENAMRYINGTRLDDRIIRTDWDAGFKEGRQYGRGR 129


>RGD|1596188 [details] [associations]
            symbol:Ncbp2 "nuclear cap binding protein subunit 2"
            species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
            process, nonsense-mediated decay" evidence=IEA;ISO] [GO:0000340
            "RNA 7-methylguanosine cap binding" evidence=ISO;ISS] [GO:0005634
            "nucleus" evidence=IEA;ISO] [GO:0005654 "nucleoplasm" evidence=ISO]
            [GO:0005737 "cytoplasm" evidence=IEA;ISO] [GO:0005845 "mRNA cap
            binding complex" evidence=ISO] [GO:0005846 "nuclear cap binding
            complex" evidence=IEA] [GO:0006370 "7-methylguanosine mRNA capping"
            evidence=IEA;ISO] [GO:0006408 "snRNA export from nucleus"
            evidence=ISS] [GO:0006417 "regulation of translation" evidence=IEA]
            [GO:0006446 "regulation of translational initiation" evidence=ISO]
            [GO:0008380 "RNA splicing" evidence=ISS] [GO:0031047 "gene
            silencing by RNA" evidence=IEA] [GO:0045292 "mRNA cis splicing, via
            spliceosome" evidence=ISO;ISS] [GO:0046833 "positive regulation of
            RNA export from nucleus" evidence=ISS] [GO:0051028 "mRNA transport"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=ISO] [GO:0005730
            "nucleolus" evidence=ISO] InterPro:IPR000504 InterPro:IPR012677
            InterPro:IPR027157 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            RGD:1596188 GO:GO:0005737 GO:GO:0005654 GO:GO:0000184 GO:GO:0000166
            GO:GO:0006446 Gene3D:3.30.70.330 GO:GO:0031047 GO:GO:0005845
            GO:GO:0000340 GO:GO:0051028 eggNOG:COG0724 GO:GO:0006370
            GO:GO:0045292 HOGENOM:HOG000217589 OrthoDB:EOG470TJG
            PANTHER:PTHR18847 KO:K12883 GeneTree:ENSGT00390000003197
            OMA:RQDYDPA GO:GO:0046833 GO:GO:0006408 EMBL:BC161994
            IPI:IPI00192753 RefSeq:NP_001102995.1 RefSeq:XP_003751123.1
            UniGene:Rn.204538 ProteinModelPortal:B1WC40 SMR:B1WC40
            STRING:B1WC40 PhosphoSite:B1WC40 PRIDE:B1WC40
            Ensembl:ENSRNOT00000002381 GeneID:100911481 GeneID:689116
            KEGG:rno:100911481 KEGG:rno:689116 UCSC:RGD:1596188 CTD:80235
            NextBio:737969 Genevestigator:B1WC40 Uniprot:B1WC40
        Length = 156

 Score = 125 (49.1 bits), Expect = 1.3e-07, P = 1.3e-07
 Identities = 31/102 (30%), Positives = 55/102 (53%)

Query:   174 DSSEASPTQIKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIE 233
             D+ E      K+  L+V  LSFYT+E+ +   F   G++ ++ + +DK+ K + G+ F+E
Sbjct:    28 DNEEQEKLLKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVE 87

Query:   234 YTTEEAASAALKEMNGKIINGWMIVVDVA---KTTPKYSRGR 272
             Y +   A  A++ +NG  ++  +I  D     K   +Y RGR
Sbjct:    88 YYSRADAENAMRYINGTRLDDRIIRTDWDAGFKEGRQYGRGR 129


>UNIPROTKB|F8VXY0 [details] [associations]
            symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
            evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0045111
            "intermediate filament cytoskeleton" evidence=IDA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0005737 GO:GO:0005730 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0045111 InterPro:IPR021662
            Pfam:PF11627 EMBL:AC078778 HGNC:HGNC:5031 ChiTaRS:HNRNPA1
            IPI:IPI01022801 ProteinModelPortal:F8VXY0 SMR:F8VXY0 PRIDE:F8VXY0
            Ensembl:ENST00000547617 ArrayExpress:F8VXY0 Bgee:F8VXY0
            Uniprot:F8VXY0
        Length = 304

 Score = 143 (55.4 bits), Expect = 1.4e-07, P = 1.4e-07
 Identities = 36/104 (34%), Positives = 60/104 (57%)

Query:   170 MVPSDSSEASPTQIKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGY 229
             M  S+S +  P Q++  KLF+ GLSF T++++LR+ FE +G L +  ++ D  +KRS+G+
Sbjct:     1 MSKSESPK-EPEQLR--KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGF 57

Query:   230 AFIEYTTEEAASAALKEMNGKIINGWMIVVDVAKTTPKYSRGRP 273
              F+ Y T E   AA+     K+ +G   VV+  +   +    RP
Sbjct:    58 GFVTYATVEEVDAAMNARPHKV-DGR--VVEPKRAVSREDSQRP 98


>UNIPROTKB|E2QRU8 [details] [associations]
            symbol:SNRNP70 "Uncharacterized protein" species:9615
            "Canis lupus familiaris" [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            InterPro:IPR022023 Pfam:PF12220 Ensembl:ENSCAFT00000005969
            Uniprot:E2QRU8
        Length = 386

 Score = 145 (56.1 bits), Expect = 1.4e-07, P = 1.4e-07
 Identities = 37/104 (35%), Positives = 57/104 (54%)

Query:   172 PSDSSEASPTQIKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAF 231
             P +   A     KT  LFV  +++ T+E  LR  FE +G +  + ++  K S + +GYAF
Sbjct:    91 PHNDPNAQGDAFKT--LFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAF 148

Query:   232 IEYTTEEAASAALKEMNGKIINGWMIVVDVAKTTPKYSRG-RPR 274
             IEY  E    +A K  +GK I+G  ++VDV +   +  +G RPR
Sbjct:   149 IEYEHERDMHSAYKHADGKKIDGRRVLVDVERG--RTVKGWRPR 190


>UNIPROTKB|F8VSB5 [details] [associations]
            symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
            evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0045111
            "intermediate filament cytoskeleton" evidence=IDA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0005737 GO:GO:0005730 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0045111 InterPro:IPR021662
            Pfam:PF11627 EMBL:AC078778 HGNC:HGNC:5031 ChiTaRS:HNRNPA1
            IPI:IPI01022218 ProteinModelPortal:F8VSB5 SMR:F8VSB5 PRIDE:F8VSB5
            Ensembl:ENST00000552494 ArrayExpress:F8VSB5 Bgee:F8VSB5
            Uniprot:F8VSB5
        Length = 306

 Score = 143 (55.4 bits), Expect = 1.4e-07, P = 1.4e-07
 Identities = 36/104 (34%), Positives = 60/104 (57%)

Query:   170 MVPSDSSEASPTQIKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGY 229
             M  S+S +  P Q++  KLF+ GLSF T++++LR+ FE +G L +  ++ D  +KRS+G+
Sbjct:     1 MSKSESPK-EPEQLR--KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGF 57

Query:   230 AFIEYTTEEAASAALKEMNGKIINGWMIVVDVAKTTPKYSRGRP 273
              F+ Y T E   AA+     K+ +G   VV+  +   +    RP
Sbjct:    58 GFVTYATVEEVDAAMNARPHKV-DGR--VVEPKRAVSREDSQRP 98


>UNIPROTKB|F8VRQ1 [details] [associations]
            symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
            evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0045111
            "intermediate filament cytoskeleton" evidence=IDA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0005737 GO:GO:0005730 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0045111 InterPro:IPR021662
            Pfam:PF11627 EMBL:AC078778 HGNC:HGNC:5031 ChiTaRS:HNRNPA1
            IPI:IPI01021093 ProteinModelPortal:F8VRQ1 SMR:F8VRQ1 PRIDE:F8VRQ1
            Ensembl:ENST00000551133 ArrayExpress:F8VRQ1 Bgee:F8VRQ1
            Uniprot:F8VRQ1
        Length = 307

 Score = 143 (55.4 bits), Expect = 1.4e-07, P = 1.4e-07
 Identities = 36/104 (34%), Positives = 60/104 (57%)

Query:   170 MVPSDSSEASPTQIKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGY 229
             M  S+S +  P Q++  KLF+ GLSF T++++LR+ FE +G L +  ++ D  +KRS+G+
Sbjct:     1 MSKSESPK-EPEQLR--KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGF 57

Query:   230 AFIEYTTEEAASAALKEMNGKIINGWMIVVDVAKTTPKYSRGRP 273
              F+ Y T E   AA+     K+ +G   VV+  +   +    RP
Sbjct:    58 GFVTYATVEEVDAAMNARPHKV-DGR--VVEPKRAVSREDSQRP 98


>FB|FBgn0263396 [details] [associations]
            symbol:sqd "squid" species:7227 "Drosophila melanogaster"
            [GO:0005634 "nucleus" evidence=IC;IDA;TAS] [GO:0005730 "nucleolus"
            evidence=IDA] [GO:0005703 "polytene chromosome puff" evidence=IDA]
            [GO:0008069 "dorsal/ventral axis specification, ovarian follicular
            epithelium" evidence=IMP] [GO:0007297 "ovarian follicle cell
            migration" evidence=IMP] [GO:0048477 "oogenesis" evidence=IMP;TAS]
            [GO:0008298 "intracellular mRNA localization" evidence=NAS;TAS]
            [GO:0017148 "negative regulation of translation" evidence=TAS]
            [GO:0003730 "mRNA 3'-UTR binding" evidence=TAS] [GO:0009953
            "dorsal/ventral pattern formation" evidence=IMP;TAS] [GO:0006405
            "RNA export from nucleus" evidence=TAS] [GO:0030529
            "ribonucleoprotein complex" evidence=ISS;NAS] [GO:0003729 "mRNA
            binding" evidence=ISS;NAS] [GO:0035062 "omega speckle"
            evidence=IDA] [GO:0000785 "chromatin" evidence=IDA] [GO:0005737
            "cytoplasm" evidence=TAS] [GO:0000184 "nuclear-transcribed mRNA
            catabolic process, nonsense-mediated decay" evidence=TAS]
            [GO:0006406 "mRNA export from nucleus" evidence=NAS] [GO:0003676
            "nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
            binding" evidence=IEA] [GO:0019094 "pole plasm mRNA localization"
            evidence=IMP] [GO:0000381 "regulation of alternative mRNA splicing,
            via spliceosome" evidence=IMP] [GO:0030720 "oocyte localization
            involved in germarium-derived egg chamber formation" evidence=IMP]
            [GO:0016325 "oocyte microtubule cytoskeleton organization"
            evidence=IMP] [GO:0007293 "germarium-derived egg chamber formation"
            evidence=IMP] [GO:0007314 "oocyte anterior/posterior axis
            specification" evidence=IMP] [GO:0045451 "pole plasm oskar mRNA
            localization" evidence=IEP] [GO:0071011 "precatalytic spliceosome"
            evidence=IDA] [GO:0000398 "mRNA splicing, via spliceosome"
            evidence=IC] [GO:0071013 "catalytic step 2 spliceosome"
            evidence=IDA] [GO:0033119 "negative regulation of RNA splicing"
            evidence=IMP] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 EMBL:AE014297 GO:GO:0005737
            GO:GO:0000184 GO:GO:0017148 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0000785 GO:GO:0003730 GO:GO:0006406 GO:GO:0033119
            GO:GO:0071011 GO:GO:0000398 GO:GO:0071013 GO:GO:0030720
            GO:GO:0007297 eggNOG:COG0724 GO:GO:0045451 GO:GO:0005703
            GO:GO:0000381 GO:GO:0016325 GO:GO:0008069
            GeneTree:ENSGT00700000104255 GO:GO:0035062 EMBL:X62637 EMBL:X62638
            EMBL:S61875 EMBL:S62100 EMBL:AY118501 EMBL:BT001384 EMBL:BT003283
            EMBL:BT023832 EMBL:S51693 PIR:A47369 PIR:B41732 PIR:B47369
            PIR:C48110 RefSeq:NP_001247088.1 RefSeq:NP_652209.1
            RefSeq:NP_731825.1 RefSeq:NP_731826.1 RefSeq:NP_996203.1
            UniGene:Dm.7189 ProteinModelPortal:Q08473 SMR:Q08473 IntAct:Q08473
            MINT:MINT-847475 STRING:Q08473 PaxDb:Q08473
            EnsemblMetazoa:FBtr0082855 GeneID:41666 KEGG:dme:Dmel_CG16901
            CTD:41666 FlyBase:FBgn0263396 InParanoid:Q08473 KO:K03102
            OMA:GDIDSIN OrthoDB:EOG43BK52 PhylomeDB:Q08473 ChiTaRS:sqd
            GenomeRNAi:41666 NextBio:824926 Bgee:Q08473 GermOnline:CG16901
            Uniprot:Q08473
        Length = 344

 Score = 144 (55.7 bits), Expect = 1.4e-07, P = 1.4e-07
 Identities = 41/116 (35%), Positives = 60/116 (51%)

Query:   155 GSENKDYGGNNLQNSMVPSDSSEASPTQIKTKKLFVTGLSFYTSEKTLRAAFEGFGELVE 214
             GSEN D G     N    + S+ AS  +   +KLFV GLS+ T+EK LR  F  +GE+  
Sbjct:    26 GSENGDAGAAGSTNGSSDNQSA-ASGQRDDDRKLFVGGLSWETTEKELRDHFGKYGEIES 84

Query:   215 VKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVDVAKTTPKYSR 270
             + +  D  + RS+G+AFI +T  EA    +   +  IIN     VD  K   ++ +
Sbjct:    85 INVKTDPQTGRSRGFAFIVFTNTEAIDK-VSAADEHIINSKK--VDPKKAKARHGK 137

 Score = 131 (51.2 bits), Expect = 4.6e-06, P = 4.6e-06
 Identities = 32/96 (33%), Positives = 52/96 (54%)

Query:   174 DSSEASPTQIKTK--KLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAF 231
             +S +  P + K +  K+FV GL+   S++ ++  F  FG +VEV++  DK   + KG+ F
Sbjct:   122 NSKKVDPKKAKARHGKIFVGGLTTEISDEEIKTYFGQFGNIVEVEMPFDKQKSQRKGFCF 181

Query:   232 IEYTTEEAASAALKEMNGKIINGWMIVVDVAKTTPK 267
             I + +E+  +  LK    KI       VDV + TPK
Sbjct:   182 ITFDSEQVVTDLLKTPKQKIAGK---EVDVKRATPK 214


>ZFIN|ZDB-GENE-060224-1 [details] [associations]
            symbol:hnrnpa3 "heterogeneous nuclear
            ribonucleoprotein A3" species:7955 "Danio rerio" [GO:0000166
            "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
            binding" evidence=IEA] [GO:0030529 "ribonucleoprotein complex"
            evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-060224-1 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0030529 HOVERGEN:HBG002295
            GeneTree:ENSGT00700000104376 EMBL:CR848724 IPI:IPI00863016
            UniGene:Dr.85855 SMR:B0V1I7 Ensembl:ENSDART00000135273 OMA:IETIDIM
            Uniprot:B0V1I7
        Length = 312

 Score = 143 (55.4 bits), Expect = 1.5e-07, P = 1.5e-07
 Identities = 32/82 (39%), Positives = 50/82 (60%)

Query:   170 MVPSDSSEASPTQIKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGY 229
             M   DS E  P Q++  KLF+ GLSF T+E +LRA FE +G+L +  ++ D  +KRS+G+
Sbjct:     1 MESRDSKE--PEQLR--KLFIGGLSFETTEDSLRAHFEQWGKLTDCVVMRDPANKRSRGF 56

Query:   230 AFIEYTTEEAASAALKEMNGKI 251
              F+ Y++     AA+     K+
Sbjct:    57 GFVTYSSVSEVDAAMTARPHKV 78


>TAIR|locus:2103670 [details] [associations]
            symbol:UBA2A "UBP1-associated protein 2A" species:3702
            "Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=ISS] [GO:0005737 "cytoplasm"
            evidence=ISM] [GO:0005515 "protein binding" evidence=IPI]
            [GO:0005634 "nucleus" evidence=IDA] [GO:0017091 "AU-rich element
            binding" evidence=IDA] [GO:0048255 "mRNA stabilization"
            evidence=NAS] [GO:0009738 "abscisic acid mediated signaling
            pathway" evidence=TAS] [GO:0006952 "defense response" evidence=IMP]
            [GO:0008219 "cell death" evidence=IMP] [GO:0009693 "ethylene
            biosynthetic process" evidence=IMP] [GO:0010150 "leaf senescence"
            evidence=IMP] [GO:0005829 "cytosol" evidence=IDA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0005829 GO:GO:0005634 EMBL:CP002686
            GO:GO:0009693 GO:GO:0006952 GO:GO:0009738 GO:GO:0000166
            GO:GO:0008219 Gene3D:3.30.70.330 GO:GO:0010150 GO:GO:0017091
            GO:GO:0048255 EMBL:AL390921 HSSP:Q14103 KO:K12741
            ProtClustDB:CLSN2683657 EMBL:AF367280 EMBL:AY037245 EMBL:AY091040
            EMBL:AY117351 EMBL:AY133549 EMBL:BT006368 EMBL:AJ439404
            IPI:IPI00547983 PIR:T51274 RefSeq:NP_001190109.1
            RefSeq:NP_001190110.1 RefSeq:NP_567042.1 RefSeq:NP_850710.1
            RefSeq:NP_850711.1 UniGene:At.9845 SMR:Q9LES2 IntAct:Q9LES2
            STRING:Q9LES2 EnsemblPlants:AT3G56860.1 EnsemblPlants:AT3G56860.2
            EnsemblPlants:AT3G56860.3 EnsemblPlants:AT3G56860.4
            EnsemblPlants:AT3G56860.5 GeneID:824853 KEGG:ath:AT3G56860
            TAIR:At3g56860 InParanoid:Q9LES2 OMA:ADEDPVH Genevestigator:Q9LES2
            Uniprot:Q9LES2
        Length = 478

 Score = 146 (56.5 bits), Expect = 1.6e-07, Sum P(2) = 1.6e-07
 Identities = 35/88 (39%), Positives = 49/88 (55%)

Query:   186 KKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALK 245
             +K+FV GL + T  +TL  AF+ +GE+ + K + DKIS +SKGY FI Y +   A  ALK
Sbjct:   140 RKIFVHGLGWDTKTETLIEAFKQYGEIEDCKAVFDKISGKSKGYGFILYKSRSGARNALK 199

Query:   246 EMNGKIINGWMIVVDVAKTTPKYSRGRP 273
             +   KI    M    +A   P +  G P
Sbjct:   200 QPQKKI-GSRMTACQLASKGPVFG-GAP 225

 Score = 38 (18.4 bits), Expect = 1.6e-07, Sum P(2) = 1.6e-07
 Identities = 8/18 (44%), Positives = 12/18 (66%)

Query:   151 DENFGSENKDY-GGNNLQ 167
             DE+ G EN+D   GN ++
Sbjct:    64 DEDDGDENEDQTDGNRIE 81


>UNIPROTKB|P09867 [details] [associations]
            symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
            species:9913 "Bos taurus" [GO:0030529 "ribonucleoprotein complex"
            evidence=ISS] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0000380
            "alternative mRNA splicing, via spliceosome" evidence=IEA]
            [GO:0051028 "mRNA transport" evidence=IEA] [GO:0005681
            "spliceosomal complex" evidence=IEA] [GO:0003723 "RNA binding"
            evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0005737 GO:GO:0005654 GO:GO:0005730
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0003697
            GO:GO:0030529 GO:GO:0051028 GO:GO:0071013 GO:GO:0051168
            eggNOG:COG0724 GO:GO:0000380 HOVERGEN:HBG002295 GO:GO:0051170
            HOGENOM:HOG000234442 KO:K12741 OrthoDB:EOG4HQDKF InterPro:IPR021662
            Pfam:PF11627 EMBL:BC105413 IPI:IPI00692235 PIR:A27241
            RefSeq:NP_001039376.1 UniGene:Bt.88002 ProteinModelPortal:P09867
            SMR:P09867 STRING:P09867 PRIDE:P09867 Ensembl:ENSBTAT00000002033
            GeneID:505093 KEGG:bta:505093 CTD:3178 GeneTree:ENSGT00550000074566
            OMA:IEVEIMT BindingDB:P09867 NextBio:20866978 Uniprot:P09867
        Length = 320

 Score = 143 (55.4 bits), Expect = 1.6e-07, P = 1.6e-07
 Identities = 36/104 (34%), Positives = 60/104 (57%)

Query:   170 MVPSDSSEASPTQIKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGY 229
             M  S+S +  P Q++  KLF+ GLSF T++++LR+ FE +G L +  ++ D  +KRS+G+
Sbjct:     1 MSKSESPK-EPEQLR--KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGF 57

Query:   230 AFIEYTTEEAASAALKEMNGKIINGWMIVVDVAKTTPKYSRGRP 273
              F+ Y T E   AA+     K+ +G   VV+  +   +    RP
Sbjct:    58 GFVTYATVEEVDAAMNARPHKV-DGR--VVEPKRAVSREDSQRP 98


>UNIPROTKB|F8W6I7 [details] [associations]
            symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
            evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0045111
            "intermediate filament cytoskeleton" evidence=IDA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0005737 GO:GO:0005730 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0045111 InterPro:IPR021662
            Pfam:PF11627 EMBL:AC078778 HGNC:HGNC:5031 ChiTaRS:HNRNPA1
            IPI:IPI01021324 ProteinModelPortal:F8W6I7 SMR:F8W6I7 PRIDE:F8W6I7
            Ensembl:ENST00000330752 ArrayExpress:F8W6I7 Bgee:F8W6I7
            Uniprot:F8W6I7
        Length = 320

 Score = 143 (55.4 bits), Expect = 1.6e-07, P = 1.6e-07
 Identities = 36/104 (34%), Positives = 60/104 (57%)

Query:   170 MVPSDSSEASPTQIKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGY 229
             M  S+S +  P Q++  KLF+ GLSF T++++LR+ FE +G L +  ++ D  +KRS+G+
Sbjct:     1 MSKSESPK-EPEQLR--KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGF 57

Query:   230 AFIEYTTEEAASAALKEMNGKIINGWMIVVDVAKTTPKYSRGRP 273
              F+ Y T E   AA+     K+ +G   VV+  +   +    RP
Sbjct:    58 GFVTYATVEEVDAAMNARPHKV-DGR--VVEPKRAVSREDSQRP 98


>UNIPROTKB|Q06A94 [details] [associations]
            symbol:HNRNPA1 "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0000380
            "alternative mRNA splicing, via spliceosome" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
            "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0005737 GO:GO:0005654 GO:GO:0005730 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003697 GO:GO:0071013 GO:GO:0051168
            eggNOG:COG0724 GO:GO:0000380 HOVERGEN:HBG002295 GO:GO:0051170
            HOGENOM:HOG000234442 KO:K12741 OrthoDB:EOG4HQDKF InterPro:IPR021662
            Pfam:PF11627 CTD:3178 GeneTree:ENSGT00550000074566 OMA:IEVEIMT
            EMBL:CU694683 EMBL:DQ972970 RefSeq:NP_001070686.1 UniGene:Ssc.49600
            SMR:Q06A94 Ensembl:ENSSSCT00000000309 GeneID:768103 KEGG:ssc:768103
            Uniprot:Q06A94
        Length = 320

 Score = 143 (55.4 bits), Expect = 1.6e-07, P = 1.6e-07
 Identities = 36/104 (34%), Positives = 60/104 (57%)

Query:   170 MVPSDSSEASPTQIKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGY 229
             M  S+S +  P Q++  KLF+ GLSF T++++LR+ FE +G L +  ++ D  +KRS+G+
Sbjct:     1 MSKSESPK-EPEQLR--KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGF 57

Query:   230 AFIEYTTEEAASAALKEMNGKIINGWMIVVDVAKTTPKYSRGRP 273
              F+ Y T E   AA+     K+ +G   VV+  +   +    RP
Sbjct:    58 GFVTYATVEEVDAAMNARPHKV-DGR--VVEPKRAVSREDSQRP 98


>UNIPROTKB|A5A6H4 [details] [associations]
            symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
            species:9598 "Pan troglodytes" [GO:0030529 "ribonucleoprotein
            complex" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
            GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
            GO:GO:0005681 GO:GO:0003723 GO:GO:0030529 GO:GO:0051028
            eggNOG:COG0724 HOVERGEN:HBG002295 HOGENOM:HOG000234442 KO:K12741
            OrthoDB:EOG4HQDKF InterPro:IPR021662 Pfam:PF11627 CTD:3178
            GeneTree:ENSGT00550000074566 OMA:IEVEIMT EMBL:AB222102
            EMBL:AL954201 RefSeq:NP_001091892.1 RefSeq:NP_001184040.1
            RefSeq:XP_003318234.1 RefSeq:XP_003954396.1 UniGene:Ptr.6288
            UniGene:Ptr.6435 ProteinModelPortal:A5A6H4 SMR:A5A6H4 PRIDE:A5A6H4
            Ensembl:ENSPTRT00000010845 GeneID:100615525 GeneID:739306
            GeneID:747284 KEGG:ptr:100615525 KEGG:ptr:739306 KEGG:ptr:747284
            CTD:739306 InParanoid:A5A6H4 BindingDB:A5A6H4 NextBio:20906554
            Uniprot:A5A6H4
        Length = 320

 Score = 143 (55.4 bits), Expect = 1.6e-07, P = 1.6e-07
 Identities = 36/104 (34%), Positives = 60/104 (57%)

Query:   170 MVPSDSSEASPTQIKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGY 229
             M  S+S +  P Q++  KLF+ GLSF T++++LR+ FE +G L +  ++ D  +KRS+G+
Sbjct:     1 MSKSESPK-EPEQLR--KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGF 57

Query:   230 AFIEYTTEEAASAALKEMNGKIINGWMIVVDVAKTTPKYSRGRP 273
              F+ Y T E   AA+     K+ +G   VV+  +   +    RP
Sbjct:    58 GFVTYATVEEVDAAMNARPHKV-DGR--VVEPKRAVSREDSQRP 98


>UNIPROTKB|Q28521 [details] [associations]
            symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
            species:9544 "Macaca mulatta" [GO:0030529 "ribonucleoprotein
            complex" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
            GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
            GO:GO:0005681 GO:GO:0003723 GO:GO:0030529 GO:GO:0051028
            eggNOG:COG0724 HOVERGEN:HBG002295 HOGENOM:HOG000234442 KO:K12741
            OrthoDB:EOG4HQDKF InterPro:IPR021662 Pfam:PF11627 CTD:3178
            EMBL:M84334 PIR:S30192 RefSeq:NP_001036248.1 UniGene:Mmu.4980
            ProteinModelPortal:Q28521 SMR:Q28521 STRING:Q28521 PRIDE:Q28521
            GeneID:702977 KEGG:mcc:702977 InParanoid:Q28521 NextBio:19966247
            Uniprot:Q28521
        Length = 320

 Score = 143 (55.4 bits), Expect = 1.6e-07, P = 1.6e-07
 Identities = 36/104 (34%), Positives = 60/104 (57%)

Query:   170 MVPSDSSEASPTQIKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGY 229
             M  S+S +  P Q++  KLF+ GLSF T++++LR+ FE +G L +  ++ D  +KRS+G+
Sbjct:     1 MSKSESPK-EPEQLR--KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGF 57

Query:   230 AFIEYTTEEAASAALKEMNGKIINGWMIVVDVAKTTPKYSRGRP 273
              F+ Y T E   AA+     K+ +G   VV+  +   +    RP
Sbjct:    58 GFVTYATVEKVDAAMNARPHKV-DGR--VVEPKRAVSREDSQRP 98


>MGI|MGI:104820 [details] [associations]
            symbol:Hnrnpa1 "heterogeneous nuclear ribonucleoprotein A1"
            species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0000380 "alternative mRNA splicing, via
            spliceosome" evidence=IDA] [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0003697 "single-stranded DNA binding"
            evidence=ISO] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
            "nucleus" evidence=IDA] [GO:0005654 "nucleoplasm" evidence=ISO]
            [GO:0005681 "spliceosomal complex" evidence=ISO] [GO:0005737
            "cytoplasm" evidence=ISO] [GO:0006397 "mRNA processing"
            evidence=IEA] [GO:0006810 "transport" evidence=IEA] [GO:0008380
            "RNA splicing" evidence=IDA] [GO:0030529 "ribonucleoprotein
            complex" evidence=ISO] [GO:0051028 "mRNA transport" evidence=IEA]
            [GO:0051168 "nuclear export" evidence=ISO] [GO:0051170 "nuclear
            import" evidence=ISO] [GO:0071013 "catalytic step 2 spliceosome"
            evidence=ISO] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 MGI:MGI:104820 GO:GO:0005737
            GO:GO:0005654 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0005681
            GO:GO:0003723 GO:GO:0003697 GO:GO:0051028 GO:GO:0051168
            eggNOG:COG0724 GO:GO:0000380 HOVERGEN:HBG002295 GO:GO:0051170
            HOGENOM:HOG000234442 KO:K12741 OrthoDB:EOG4HQDKF InterPro:IPR021662
            Pfam:PF11627 CTD:3178 GeneTree:ENSGT00550000074566 ChiTaRS:HNRNPA1
            EMBL:M99167 EMBL:D86729 EMBL:D86728 EMBL:AK007802 EMBL:AK088308
            EMBL:AK131999 EMBL:AK135391 EMBL:AK161730 EMBL:AK166901
            EMBL:AK167161 EMBL:AK167810 EMBL:AK167913 EMBL:AK168420
            EMBL:AK168531 EMBL:BC080675 EMBL:BC083136 IPI:IPI00553777
            IPI:IPI00817004 PIR:A44485 RefSeq:NP_034577.1 UniGene:Mm.237064
            UniGene:Mm.432031 ProteinModelPortal:P49312 SMR:P49312
            IntAct:P49312 STRING:P49312 PhosphoSite:P49312 PaxDb:P49312
            PRIDE:P49312 Ensembl:ENSMUST00000087351 GeneID:15382 KEGG:mmu:15382
            UCSC:uc007xxp.1 UCSC:uc012aah.1 BindingDB:P49312 NextBio:288050
            Bgee:P49312 CleanEx:MM_HNRNPA1 Genevestigator:P49312
            GermOnline:ENSMUSG00000058922 Uniprot:P49312
        Length = 320

 Score = 143 (55.4 bits), Expect = 1.6e-07, P = 1.6e-07
 Identities = 36/104 (34%), Positives = 60/104 (57%)

Query:   170 MVPSDSSEASPTQIKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGY 229
             M  S+S +  P Q++  KLF+ GLSF T++++LR+ FE +G L +  ++ D  +KRS+G+
Sbjct:     1 MSKSESPK-EPEQLR--KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGF 57

Query:   230 AFIEYTTEEAASAALKEMNGKIINGWMIVVDVAKTTPKYSRGRP 273
              F+ Y T E   AA+     K+ +G   VV+  +   +    RP
Sbjct:    58 GFVTYATVEEVDAAMNARPHKV-DGR--VVEPKRAVSREDSQRP 98


>RGD|69234 [details] [associations]
            symbol:Hnrnpa1 "heterogeneous nuclear ribonucleoprotein A1"
           species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
           evidence=IEA] [GO:0000380 "alternative mRNA splicing, via
           spliceosome" evidence=ISO] [GO:0003697 "single-stranded DNA binding"
           evidence=ISO;ISS;TAS] [GO:0003723 "RNA binding" evidence=TAS]
           [GO:0005634 "nucleus" evidence=ISO] [GO:0005654 "nucleoplasm"
           evidence=ISO;ISS] [GO:0005681 "spliceosomal complex"
           evidence=ISO;ISS] [GO:0005730 "nucleolus" evidence=ISO] [GO:0005737
           "cytoplasm" evidence=ISO;ISS] [GO:0006397 "mRNA processing"
           evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA;ISO]
           [GO:0016070 "RNA metabolic process" evidence=TAS] [GO:0030529
           "ribonucleoprotein complex" evidence=ISO;ISS] [GO:0045111
           "intermediate filament cytoskeleton" evidence=ISO] [GO:0051028 "mRNA
           transport" evidence=IEA] [GO:0051168 "nuclear export"
           evidence=ISO;ISS] [GO:0051170 "nuclear import" evidence=ISO;ISS]
           [GO:0071013 "catalytic step 2 spliceosome" evidence=ISO]
           InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
           SMART:SM00360 RGD:69234 GO:GO:0005737 GO:GO:0005654 GO:GO:0008380
           GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005681
           GO:GO:0003723 GO:GO:0003697 GO:GO:0016070 GO:GO:0051028
           GO:GO:0051168 eggNOG:COG0724 HOVERGEN:HBG002295 GO:GO:0051170
           HOGENOM:HOG000234442 KO:K12741 InterPro:IPR021662 Pfam:PF11627
           CTD:3178 EMBL:M12156 IPI:IPI00421500 PIR:A38304 RefSeq:NP_058944.1
           UniGene:Rn.25771 ProteinModelPortal:P04256 SMR:P04256 IntAct:P04256
           STRING:P04256 PhosphoSite:P04256 PRIDE:P04256 GeneID:29578
           KEGG:rno:29578 UCSC:RGD:69234 NextBio:609678 ArrayExpress:P04256
           Genevestigator:P04256 GermOnline:ENSRNOG00000036839 Uniprot:P04256
        Length = 320

 Score = 143 (55.4 bits), Expect = 1.6e-07, P = 1.6e-07
 Identities = 36/104 (34%), Positives = 60/104 (57%)

Query:   170 MVPSDSSEASPTQIKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGY 229
             M  S+S +  P Q++  KLF+ GLSF T++++LR+ FE +G L +  ++ D  +KRS+G+
Sbjct:     1 MSKSESPK-EPEQLR--KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGF 57

Query:   230 AFIEYTTEEAASAALKEMNGKIINGWMIVVDVAKTTPKYSRGRP 273
              F+ Y T E   AA+     K+ +G   VV+  +   +    RP
Sbjct:    58 GFVTYATVEEVDAAMNARPHKV-DGR--VVEPKRAVSREDSQRP 98


>UNIPROTKB|Q5I0M7 [details] [associations]
            symbol:Hnrnpa1 "Hnrpa1 protein" species:10116 "Rattus
            norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            RGD:69234 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            EMBL:CH474035 eggNOG:COG0724 HOVERGEN:HBG002295 InterPro:IPR021662
            Pfam:PF11627 GeneTree:ENSGT00550000074566 IPI:IPI00421500
            UniGene:Rn.25771 EMBL:BC088150 SMR:Q5I0M7 STRING:Q5I0M7
            Ensembl:ENSRNOT00000055285 Genevestigator:Q5I0M7 Uniprot:Q5I0M7
        Length = 320

 Score = 143 (55.4 bits), Expect = 1.6e-07, P = 1.6e-07
 Identities = 36/104 (34%), Positives = 60/104 (57%)

Query:   170 MVPSDSSEASPTQIKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGY 229
             M  S+S +  P Q++  KLF+ GLSF T++++LR+ FE +G L +  ++ D  +KRS+G+
Sbjct:     1 MSKSESPK-EPEQLR--KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGF 57

Query:   230 AFIEYTTEEAASAALKEMNGKIINGWMIVVDVAKTTPKYSRGRP 273
              F+ Y T E   AA+     K+ +G   VV+  +   +    RP
Sbjct:    58 GFVTYATVEEVDAAMNARPHKV-DGR--VVEPKRAVSREDSQRP 98


>WB|WBGene00006321 [details] [associations]
            symbol:sup-12 species:6239 "Caenorhabditis elegans"
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000380
            "alternative mRNA splicing, via spliceosome" evidence=IMP]
            [GO:0040012 "regulation of locomotion" evidence=IGI] [GO:0032956
            "regulation of actin cytoskeleton organization" evidence=IGI]
            [GO:0016607 "nuclear speck" evidence=IDA] [GO:0036002 "pre-mRNA
            binding" evidence=IPI] [GO:0000381 "regulation of alternative mRNA
            splicing, via spliceosome" evidence=IMP] [GO:0097157 "pre-mRNA
            intronic binding" evidence=IPI] [GO:0030529 "ribonucleoprotein
            complex" evidence=IPI] [GO:0005515 "protein binding" evidence=IPI]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0000166 GO:GO:0016607 Gene3D:3.30.70.330
            GO:GO:0040012 GO:GO:0030529 GO:GO:0032956 GO:GO:0097157
            GO:GO:0000380 HSSP:P09651 HOGENOM:HOG000276232
            GeneTree:ENSGT00390000002308 EMBL:FO081409 GeneID:180674
            KEGG:cel:CELE_T22B2.4 CTD:180674 PIR:T33034 RefSeq:NP_508674.1
            ProteinModelPortal:O45189 SMR:O45189 DIP:DIP-24970N IntAct:O45189
            MINT:MINT-1047167 STRING:O45189 EnsemblMetazoa:T22B2.4a
            UCSC:T22B2.4 WormBase:T22B2.4a InParanoid:O45189 OMA:DRNTQKS
            NextBio:910400 ArrayExpress:O45189 Uniprot:O45189
        Length = 248

 Score = 140 (54.3 bits), Expect = 1.6e-07, P = 1.6e-07
 Identities = 30/76 (39%), Positives = 48/76 (63%)

Query:   187 KLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKE 246
             K+FV GL ++TS+KTL   FE FG++ E  +I D+ +++S+GY F+      +A  A K+
Sbjct:    36 KIFVGGLPYHTSDKTLHEYFEQFGDIEEAVVITDRNTQKSRGYGFVTMKDRASAERACKD 95

Query:   247 MNGKIINGWMIVVDVA 262
              N  II+G    V++A
Sbjct:    96 PN-PIIDGRKANVNLA 110


>UNIPROTKB|O45189 [details] [associations]
            symbol:sup-12 "Protein SUP-12, isoform a" species:6239
            "Caenorhabditis elegans" [GO:0005515 "protein binding"
            evidence=IPI] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 GO:GO:0016607
            Gene3D:3.30.70.330 GO:GO:0040012 GO:GO:0030529 GO:GO:0032956
            GO:GO:0097157 GO:GO:0000380 HSSP:P09651 HOGENOM:HOG000276232
            GeneTree:ENSGT00390000002308 EMBL:FO081409 GeneID:180674
            KEGG:cel:CELE_T22B2.4 CTD:180674 PIR:T33034 RefSeq:NP_508674.1
            ProteinModelPortal:O45189 SMR:O45189 DIP:DIP-24970N IntAct:O45189
            MINT:MINT-1047167 STRING:O45189 EnsemblMetazoa:T22B2.4a
            UCSC:T22B2.4 WormBase:T22B2.4a InParanoid:O45189 OMA:DRNTQKS
            NextBio:910400 ArrayExpress:O45189 Uniprot:O45189
        Length = 248

 Score = 140 (54.3 bits), Expect = 1.6e-07, P = 1.6e-07
 Identities = 30/76 (39%), Positives = 48/76 (63%)

Query:   187 KLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKE 246
             K+FV GL ++TS+KTL   FE FG++ E  +I D+ +++S+GY F+      +A  A K+
Sbjct:    36 KIFVGGLPYHTSDKTLHEYFEQFGDIEEAVVITDRNTQKSRGYGFVTMKDRASAERACKD 95

Query:   247 MNGKIINGWMIVVDVA 262
              N  II+G    V++A
Sbjct:    96 PN-PIIDGRKANVNLA 110


>UNIPROTKB|J3KP15 [details] [associations]
            symbol:SRSF2 "Serine/arginine-rich-splicing factor 2"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            EMBL:AC005837 HGNC:HGNC:10783 ChiTaRS:SRSF2 Ensembl:ENST00000358156
            Uniprot:J3KP15
        Length = 134

 Score = 124 (48.7 bits), Expect = 1.7e-07, P = 1.7e-07
 Identities = 26/76 (34%), Positives = 46/76 (60%)

Query:   188 LFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEM 247
             L V  L++ TS  TLR  FE +G + +V I  D+ +K S+G+AF+ +  +  A  A+  M
Sbjct:    16 LKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAM 75

Query:   248 NGKIINGWMIVVDVAK 263
             +G +++G  + V +A+
Sbjct:    76 DGAVLDGRELRVQMAR 91


>UNIPROTKB|J3QL05 [details] [associations]
            symbol:SRSF2 "Serine/arginine-rich-splicing factor 2"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            EMBL:AC005837 HGNC:HGNC:10783 ChiTaRS:SRSF2 Ensembl:ENST00000583836
            Uniprot:J3QL05
        Length = 130

 Score = 124 (48.7 bits), Expect = 1.7e-07, P = 1.7e-07
 Identities = 26/76 (34%), Positives = 46/76 (60%)

Query:   188 LFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEM 247
             L V  L++ TS  TLR  FE +G + +V I  D+ +K S+G+AF+ +  +  A  A+  M
Sbjct:    16 LKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAM 75

Query:   248 NGKIINGWMIVVDVAK 263
             +G +++G  + V +A+
Sbjct:    76 DGAVLDGRELRVQMAR 91


>UNIPROTKB|F8W1S7 [details] [associations]
            symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
            evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0045111
            "intermediate filament cytoskeleton" evidence=IDA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0005737 GO:GO:0005730 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0045111 InterPro:IPR021662
            Pfam:PF11627 EMBL:AC078778 HGNC:HGNC:5031 ChiTaRS:HNRNPA1
            IPI:IPI01021812 ProteinModelPortal:F8W1S7 SMR:F8W1S7 PRIDE:F8W1S7
            Ensembl:ENST00000552591 ArrayExpress:F8W1S7 Bgee:F8W1S7
            Uniprot:F8W1S7
        Length = 330

 Score = 143 (55.4 bits), Expect = 1.7e-07, P = 1.7e-07
 Identities = 36/104 (34%), Positives = 60/104 (57%)

Query:   170 MVPSDSSEASPTQIKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGY 229
             M  S+S +  P Q++  KLF+ GLSF T++++LR+ FE +G L +  ++ D  +KRS+G+
Sbjct:     1 MSKSESPK-EPEQLR--KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGF 57

Query:   230 AFIEYTTEEAASAALKEMNGKIINGWMIVVDVAKTTPKYSRGRP 273
              F+ Y T E   AA+     K+ +G   VV+  +   +    RP
Sbjct:    58 GFVTYATVEEVDAAMNARPHKV-DGR--VVEPKRAVSREDSQRP 98


>UNIPROTKB|F1M2S4 [details] [associations]
            symbol:F1M2S4 "Uncharacterized protein" species:10116
            "Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00951465
            ProteinModelPortal:F1M2S4 Ensembl:ENSRNOT00000050715 Uniprot:F1M2S4
        Length = 208

 Score = 136 (52.9 bits), Expect = 1.8e-07, P = 1.8e-07
 Identities = 31/87 (35%), Positives = 51/87 (58%)

Query:   187 KLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKE 246
             KLF+ GLSF T++++LR+ FE +G L +  ++ D  +KRS+G+ F+ Y T E   AA+  
Sbjct:     8 KLFIGGLSFKTTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA 67

Query:   247 MNGKIINGWMIVVDVAKTTPKYSRGRP 273
                K+ +G   VV+  +   +    RP
Sbjct:    68 RPHKV-DGR--VVEPKRAVSREDSRRP 91


>UNIPROTKB|P08621 [details] [associations]
            symbol:SNRNP70 "U1 small nuclear ribonucleoprotein 70 kDa"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0016607 "nuclear speck" evidence=IEA] [GO:0005515
            "protein binding" evidence=IPI] [GO:0003723 "RNA binding"
            evidence=IMP] [GO:0043484 "regulation of RNA splicing"
            evidence=IMP] [GO:0005681 "spliceosomal complex" evidence=IDA]
            [GO:0000398 "mRNA splicing, via spliceosome" evidence=IC;IDA;TAS]
            [GO:0006397 "mRNA processing" evidence=TAS] [GO:0005634 "nucleus"
            evidence=IDA] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0008380
            "RNA splicing" evidence=TAS] [GO:0010467 "gene expression"
            evidence=TAS] Reactome:REACT_71 InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0005654 GO:GO:0000166 GO:GO:0016607 Reactome:REACT_1675
            Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003723 EMBL:CH471177
            GO:GO:0043484 GO:GO:0000398 eggNOG:COG0724 PDB:3CW1 PDB:3PGW
            PDBsum:3CW1 PDBsum:3PGW KO:K11093 OMA:KKSRGYL InterPro:IPR022023
            Pfam:PF12220 CTD:6625 OrthoDB:EOG4CJVJ7 EMBL:X04654 EMBL:X06814
            EMBL:X06815 EMBL:X06817 EMBL:X07402 EMBL:X06816 EMBL:X06812
            EMBL:X06811 EMBL:X07401 EMBL:X07403 EMBL:M22636 EMBL:M57939
            EMBL:M57929 EMBL:M57930 EMBL:M57932 EMBL:M57934 EMBL:M57937
            EMBL:M57935 EMBL:AK096783 EMBL:X84841 EMBL:AL117507 EMBL:BC001315
            IPI:IPI00219483 IPI:IPI00219484 IPI:IPI00219485 IPI:IPI00290204
            PIR:A25707 PIR:S00674 RefSeq:NP_003080.2 UniGene:Hs.467097 PDB:2L5I
            PDB:2L5J PDBsum:2L5I PDBsum:2L5J ProteinModelPortal:P08621
            SMR:P08621 DIP:DIP-29406N IntAct:P08621 MINT:MINT-5004037
            STRING:P08621 PhosphoSite:P08621 DMDM:13635663 PaxDb:P08621
            PRIDE:P08621 Ensembl:ENST00000221448 Ensembl:ENST00000401730
            Ensembl:ENST00000544278 GeneID:6625 KEGG:hsa:6625 UCSC:uc002pmk.3
            GeneCards:GC19P049588 HGNC:HGNC:11150 HPA:CAB001718 MIM:180740
            neXtProt:NX_P08621 PharmGKB:PA35992 InParanoid:P08621
            ChiTaRS:SNRNP70 EvolutionaryTrace:P08621 GenomeRNAi:6625
            NextBio:25805 PMAP-CutDB:P08621 ArrayExpress:P08621 Bgee:P08621
            Genevestigator:P08621 GermOnline:ENSG00000104852 Uniprot:P08621
        Length = 437

 Score = 145 (56.1 bits), Expect = 1.8e-07, P = 1.8e-07
 Identities = 37/104 (35%), Positives = 57/104 (54%)

Query:   172 PSDSSEASPTQIKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAF 231
             P +   A     KT  LFV  +++ T+E  LR  FE +G +  + ++  K S + +GYAF
Sbjct:    91 PHNDPNAQGDAFKT--LFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAF 148

Query:   232 IEYTTEEAASAALKEMNGKIINGWMIVVDVAKTTPKYSRG-RPR 274
             IEY  E    +A K  +GK I+G  ++VDV +   +  +G RPR
Sbjct:   149 IEYEHERDMHSAYKHADGKKIDGRRVLVDVERG--RTVKGWRPR 190


>UNIPROTKB|Q1RMR2 [details] [associations]
            symbol:SNRNP70 "U1 small nuclear ribonucleoprotein 70 kDa"
            species:9913 "Bos taurus" [GO:0043484 "regulation of RNA splicing"
            evidence=ISS] [GO:0005681 "spliceosomal complex" evidence=ISS]
            [GO:0003723 "RNA binding" evidence=ISS] [GO:0000398 "mRNA splicing,
            via spliceosome" evidence=ISS] [GO:0016607 "nuclear speck"
            evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0000166 GO:GO:0016607 Gene3D:3.30.70.330
            GO:GO:0005681 GO:GO:0003723 GO:GO:0043484 GO:GO:0000398
            eggNOG:COG0724 HOGENOM:HOG000236289 KO:K11093 OMA:KKSRGYL
            InterPro:IPR022023 Pfam:PF12220 EMBL:BC114762 IPI:IPI00711491
            RefSeq:NP_001069514.1 UniGene:Bt.12748 ProteinModelPortal:Q1RMR2
            STRING:Q1RMR2 PRIDE:Q1RMR2 Ensembl:ENSBTAT00000002587 GeneID:535113
            KEGG:bta:535113 CTD:6625 GeneTree:ENSGT00530000063750
            InParanoid:Q1RMR2 OrthoDB:EOG4CJVJ7 NextBio:20876626
            ArrayExpress:Q1RMR2 Uniprot:Q1RMR2
        Length = 439

 Score = 145 (56.1 bits), Expect = 1.8e-07, P = 1.8e-07
 Identities = 37/104 (35%), Positives = 57/104 (54%)

Query:   172 PSDSSEASPTQIKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAF 231
             P +   A     KT  LFV  +++ T+E  LR  FE +G +  + ++  K S + +GYAF
Sbjct:    91 PHNDPNAQGDAFKT--LFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAF 148

Query:   232 IEYTTEEAASAALKEMNGKIINGWMIVVDVAKTTPKYSRG-RPR 274
             IEY  E    +A K  +GK I+G  ++VDV +   +  +G RPR
Sbjct:   149 IEYEHERDMHSAYKHADGKKIDGRRVLVDVERG--RTVKGWRPR 190


>UNIPROTKB|F6V5G7 [details] [associations]
            symbol:SNRNP70 "Uncharacterized protein" species:9615
            "Canis lupus familiaris" [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            KO:K11093 OMA:KKSRGYL InterPro:IPR022023 Pfam:PF12220 CTD:6625
            GeneTree:ENSGT00530000063750 Ensembl:ENSCAFT00000005969
            EMBL:AAEX03000805 RefSeq:XP_541503.2 ProteinModelPortal:F6V5G7
            GeneID:484388 KEGG:cfa:484388 Uniprot:F6V5G7
        Length = 439

 Score = 145 (56.1 bits), Expect = 1.8e-07, P = 1.8e-07
 Identities = 37/104 (35%), Positives = 57/104 (54%)

Query:   172 PSDSSEASPTQIKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAF 231
             P +   A     KT  LFV  +++ T+E  LR  FE +G +  + ++  K S + +GYAF
Sbjct:    91 PHNDPNAQGDAFKT--LFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAF 148

Query:   232 IEYTTEEAASAALKEMNGKIINGWMIVVDVAKTTPKYSRG-RPR 274
             IEY  E    +A K  +GK I+G  ++VDV +   +  +G RPR
Sbjct:   149 IEYEHERDMHSAYKHADGKKIDGRRVLVDVERG--RTVKGWRPR 190


>MGI|MGI:98341 [details] [associations]
            symbol:Snrnp70 "small nuclear ribonucleoprotein 70 (U1)"
            species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0000398 "mRNA splicing, via spliceosome"
            evidence=ISO] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=ISO] [GO:0005634 "nucleus"
            evidence=ISS] [GO:0005681 "spliceosomal complex" evidence=ISO]
            [GO:0030529 "ribonucleoprotein complex" evidence=IEA] [GO:0043484
            "regulation of RNA splicing" evidence=ISO] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            MGI:MGI:98341 GO:GO:0000166 GO:GO:0016607 Gene3D:3.30.70.330
            GO:GO:0005681 GO:GO:0003723 GO:GO:0043484 GO:GO:0000398
            eggNOG:COG0724 HOGENOM:HOG000236289 KO:K11093 OMA:KKSRGYL
            InterPro:IPR022023 Pfam:PF12220 CTD:6625
            GeneTree:ENSGT00530000063750 OrthoDB:EOG4CJVJ7 ChiTaRS:SNRNP70
            EMBL:AK133115 EMBL:AK146729 EMBL:X15769 EMBL:X15770 EMBL:X15771
            EMBL:X15772 EMBL:X15774 EMBL:X15775 EMBL:X15776 IPI:IPI00230541
            IPI:IPI00625105 PIR:S04336 PIR:S04824 RefSeq:NP_033250.3
            UniGene:Mm.216386 ProteinModelPortal:Q62376 SMR:Q62376
            MINT:MINT-1868298 STRING:Q62376 PhosphoSite:Q62376 PaxDb:Q62376
            PRIDE:Q62376 Ensembl:ENSMUST00000074575 GeneID:20637 KEGG:mmu:20637
            HOVERGEN:HBG094947 InParanoid:Q62376 NextBio:299035 Bgee:Q62376
            Genevestigator:Q62376 GermOnline:ENSMUSG00000063511 Uniprot:Q62376
        Length = 448

 Score = 145 (56.1 bits), Expect = 1.8e-07, P = 1.8e-07
 Identities = 37/104 (35%), Positives = 57/104 (54%)

Query:   172 PSDSSEASPTQIKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAF 231
             P +   A     KT  LFV  +++ T+E  LR  FE +G +  + ++  K S + +GYAF
Sbjct:    91 PHNDPNAQGDAFKT--LFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAF 148

Query:   232 IEYTTEEAASAALKEMNGKIINGWMIVVDVAKTTPKYSRG-RPR 274
             IEY  E    +A K  +GK I+G  ++VDV +   +  +G RPR
Sbjct:   149 IEYEHERDMHSAYKHADGKKIDGRRVLVDVERG--RTVKGWRPR 190


>UNIPROTKB|I3LNE5 [details] [associations]
            symbol:SNRNP70 "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0043484 "regulation of RNA splicing" evidence=IEA]
            [GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0003723 "RNA
            binding" evidence=IEA] [GO:0000398 "mRNA splicing, via spliceosome"
            evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0005681
            GO:GO:0003723 GO:GO:0043484 GO:GO:0000398 OMA:KKSRGYL
            InterPro:IPR022023 Pfam:PF12220 GeneTree:ENSGT00530000063750
            EMBL:FP102974 Ensembl:ENSSSCT00000022304 Uniprot:I3LNE5
        Length = 452

 Score = 145 (56.1 bits), Expect = 1.9e-07, P = 1.9e-07
 Identities = 37/104 (35%), Positives = 57/104 (54%)

Query:   172 PSDSSEASPTQIKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAF 231
             P +   A     KT  LFV  +++ T+E  LR  FE +G +  + ++  K S + +GYAF
Sbjct:    91 PHNDPNAQGDAFKT--LFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAF 148

Query:   232 IEYTTEEAASAALKEMNGKIINGWMIVVDVAKTTPKYSRG-RPR 274
             IEY  E    +A K  +GK I+G  ++VDV +   +  +G RPR
Sbjct:   149 IEYEHERDMHSAYKHADGKKIDGRRVLVDVERG--RTVKGWRPR 190


>FB|FBgn0028577 [details] [associations]
            symbol:pUf68 "poly U binding factor 68kD" species:7227
            "Drosophila melanogaster" [GO:0008266 "poly(U) RNA binding"
            evidence=ISS;NAS] [GO:0000398 "mRNA splicing, via spliceosome"
            evidence=IC;ISS;IMP;NAS] [GO:0003729 "mRNA binding" evidence=ISS]
            [GO:0006376 "mRNA splice site selection" evidence=NAS;IMP]
            [GO:0007282 "cystoblast division" evidence=IMP] [GO:0000380
            "alternative mRNA splicing, via spliceosome" evidence=IMP]
            [GO:0005634 "nucleus" evidence=IC;IDA] [GO:0051726 "regulation of
            cell cycle" evidence=IMP] [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0000381 "regulation of alternative mRNA splicing,
            via spliceosome" evidence=IMP] [GO:0005515 "protein binding"
            evidence=IPI] [GO:0043234 "protein complex" evidence=IPI]
            [GO:0071011 "precatalytic spliceosome" evidence=IDA] [GO:0071013
            "catalytic step 2 spliceosome" evidence=IDA] [GO:0001558
            "regulation of cell growth" evidence=IMP] [GO:0022008
            "neurogenesis" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0043234
            EMBL:AE014296 GO:GO:0008266 GO:GO:0022008 GO:GO:0000166
            GO:GO:0001558 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0048477
            GO:GO:0071011 GO:GO:0071013 GO:GO:0007282 eggNOG:COG0724
            GO:GO:0000380 GO:GO:0006376 GO:GO:0000381
            GeneTree:ENSGT00630000089747 InterPro:IPR006532 TIGRFAMs:TIGR01645
            KO:K12838 OMA:CLQQVNG EMBL:AF190745 EMBL:AF479079 EMBL:AY061006
            EMBL:BT003317 RefSeq:NP_001163315.1 RefSeq:NP_001163316.1
            RefSeq:NP_001163317.1 RefSeq:NP_001163318.1 RefSeq:NP_001163319.1
            RefSeq:NP_001163320.1 RefSeq:NP_525123.2 RefSeq:NP_728610.1
            RefSeq:NP_728611.1 RefSeq:NP_728612.1 UniGene:Dm.7331
            ProteinModelPortal:Q8T6B9 SMR:Q8T6B9 IntAct:Q8T6B9 MINT:MINT-742668
            STRING:Q8T6B9 PaxDb:Q8T6B9 EnsemblMetazoa:FBtr0072709 GeneID:38173
            KEGG:dme:Dmel_CG12085 CTD:38173 FlyBase:FBgn0028577
            InParanoid:Q8T6B9 OrthoDB:EOG40RXXN PhylomeDB:Q8T6B9 ChiTaRS:pUf68
            GenomeRNAi:38173 NextBio:807323 Bgee:Q8T6B9 GermOnline:CG12085
            Uniprot:Q8T6B9
        Length = 637

 Score = 147 (56.8 bits), Expect = 1.9e-07, P = 1.9e-07
 Identities = 29/81 (35%), Positives = 47/81 (58%)

Query:   187 KLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKE 246
             +++V  +SF   E T+R AF  FG +  + +  D I+++ KG+AF+EY   E A  AL++
Sbjct:   131 RVYVGSISFELKEDTIRVAFTPFGPIKSINMSWDPITQKHKGFAFVEYEIPEGAQLALEQ 190

Query:   247 MNGKIINGWMIVVDVAKTTPK 267
             MNG ++ G  I V      P+
Sbjct:   191 MNGALMGGRNIKVGRPSNMPQ 211


>UNIPROTKB|D4AD23 [details] [associations]
            symbol:D4AD23 "Uncharacterized protein" species:10116
            "Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 OrthoDB:EOG4HQDKF
            InterPro:IPR021662 Pfam:PF11627 IPI:IPI00390944
            ProteinModelPortal:D4AD23 Ensembl:ENSRNOT00000039846 Uniprot:D4AD23
        Length = 313

 Score = 142 (55.0 bits), Expect = 1.9e-07, P = 1.9e-07
 Identities = 31/87 (35%), Positives = 56/87 (64%)

Query:   170 MVPSDSSEASPTQIKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGY 229
             M  S+S +  P Q++  KLF+  LSF T++++LR+ FE +G L +  ++ D  +KRS+G+
Sbjct:     1 MSKSESPK-EPEQLR--KLFIGALSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGF 57

Query:   230 AFIEYTTEEAASAAL----KEMNGKII 252
              F+ Y T E   AA+    +++NG+++
Sbjct:    58 GFVTYATVEEVDAAMNARPQKVNGRVV 84


>UNIPROTKB|D6RAF8 [details] [associations]
            symbol:HNRNPD "Heterogeneous nuclear ribonucleoprotein D0"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0043488 "regulation of mRNA stability" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0005829 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003676 GO:GO:0048255 HOGENOM:HOG000234441 EMBL:AC124016
            HGNC:HGNC:5036 ChiTaRS:HNRNPD InterPro:IPR012956 Pfam:PF08143
            IPI:IPI00965952 ProteinModelPortal:D6RAF8 SMR:D6RAF8
            Ensembl:ENST00000507010 ArrayExpress:D6RAF8 Bgee:D6RAF8
            Uniprot:D6RAF8
        Length = 221

 Score = 137 (53.3 bits), Expect = 2.1e-07, P = 2.1e-07
 Identities = 36/102 (35%), Positives = 63/102 (61%)

Query:   156 SENKDYGGNNLQNSMVPSDSSEASPTQIKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEV 215
             S+N++  G++  NS  P  S EA+  Q +  K+F+ GLS+ T++K L+  F  FGE+V+ 
Sbjct:    71 SKNEEDEGHS--NSS-PRHS-EAATAQREEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDC 126

Query:   216 KIIMDKISKRSKGYAFIEYTTEEAASAAL--KE--MNGKIIN 253
              + +D I+ RS+G+ F+ +   E+    +  KE  +NGK+I+
Sbjct:   127 TLKLDPITGRSRGFGFVLFKESESVDKVMDQKEHKLNGKVID 168


>ZFIN|ZDB-GENE-040426-1391 [details] [associations]
            symbol:tra2a "transformer-2 alpha" species:7955
            "Danio rerio" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            ZFIN:ZDB-GENE-040426-1391 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003676 eggNOG:COG0724 HOGENOM:HOG000276232
            GeneTree:ENSGT00700000104309 HSSP:P52298 CTD:29896
            HOVERGEN:HBG102125 KO:K12897 OMA:DRYEEYD OrthoDB:EOG4BVRW2
            EMBL:BX469899 EMBL:BC054632 IPI:IPI00510581 RefSeq:NP_956710.1
            UniGene:Dr.75585 SMR:Q7T2A0 STRING:Q7T2A0
            Ensembl:ENSDART00000008595 GeneID:393388 KEGG:dre:393388
            InParanoid:Q7T2A0 NextBio:20814435 Uniprot:Q7T2A0
        Length = 297

 Score = 141 (54.7 bits), Expect = 2.2e-07, P = 2.2e-07
 Identities = 42/136 (30%), Positives = 66/136 (48%)

Query:   147 SVQPDEN---FGSENKDYGGNNLQNSMVPSDSSEASPTQIKTKKLFVTGLSFYTSEKTLR 203
             S  P+ N          Y  ++ ++S    D+  A+P       L V GLS YT+E+ LR
Sbjct:    96 SASPNSNRRKHAGSRSSYSHDSKKDSHNQGDA-RANPDP--NTCLGVFGLSLYTTERDLR 152

Query:   204 AAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVDVAK 263
               F  +G L  V ++ D+ + RS+G+AF+ +   + A  A++  NG  ++G  I VD + 
Sbjct:   153 EVFSRYGSLAGVNVVYDQRTGRSRGFAFVYFEHIDDAKEAMERANGMELDGRRIRVDYSI 212

Query:   264 T------TPKYSRGRP 273
             T      TP    GRP
Sbjct:   213 TKRPHTPTPGIYMGRP 228


>RGD|1309982 [details] [associations]
            symbol:Hnrnpc "heterogeneous nuclear ribonucleoprotein C
            (C1/C2)" species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide
            binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
            [GO:0003729 "mRNA binding" evidence=ISO] [GO:0005634 "nucleus"
            evidence=ISO] [GO:0005681 "spliceosomal complex" evidence=IEA;ISO]
            [GO:0006397 "mRNA processing" evidence=IEA] [GO:0008380 "RNA
            splicing" evidence=IEA] [GO:0042802 "identical protein binding"
            evidence=ISO] [GO:0045120 "pronucleus" evidence=ISO] [GO:0071013
            "catalytic step 2 spliceosome" evidence=ISO] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            RGD:1309982 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
            Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003723 eggNOG:COG0724
            HOGENOM:HOG000234441 HOVERGEN:HBG002295 EMBL:X16933 IPI:IPI00213609
            PIR:S09017 UniGene:Rn.101929 ProteinModelPortal:P17132 SMR:P17132
            STRING:P17132 PRIDE:P17132 UCSC:RGD:1309982 ArrayExpress:P17132
            Genevestigator:P17132 GermOnline:ENSRNOG00000002292 Uniprot:P17132
        Length = 158

 Score = 123 (48.4 bits), Expect = 2.2e-07, P = 2.2e-07
 Identities = 26/87 (29%), Positives = 47/87 (54%)

Query:   160 DYGGNNLQNSMVPSDSSEASPTQIKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIM 219
             D   + L   ++    ++A  T+   KK+FV GLS  T E+ +R  F GFGE+  +++ M
Sbjct:     8 DQKEHKLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPM 67

Query:   220 DKISKRSKGYAFIEYTTEEAASAALKE 246
             D  + + +G+ FI +  EE     +++
Sbjct:    68 DNKTNKRRGFCFITFKEEEPVKKIMEK 94


>ZFIN|ZDB-GENE-020419-31 [details] [associations]
            symbol:ncbp2 "nuclear cap binding protein subunit 2"
            species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0000339 "RNA cap binding" evidence=IEA]
            [GO:0045292 "mRNA cis splicing, via spliceosome" evidence=IEA;ISS]
            [GO:0005846 "nuclear cap binding complex" evidence=IEA] [GO:0003676
            "nucleic acid binding" evidence=IEA] [GO:0005622 "intracellular"
            evidence=ISS] [GO:0008380 "RNA splicing" evidence=IEA;ISS]
            [GO:0046833 "positive regulation of RNA export from nucleus"
            evidence=ISS] [GO:0000340 "RNA 7-methylguanosine cap binding"
            evidence=ISS] [GO:0006408 "snRNA export from nucleus" evidence=ISS]
            [GO:0000184 "nuclear-transcribed mRNA catabolic process,
            nonsense-mediated decay" evidence=IEA] [GO:0005634 "nucleus"
            evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=IEA] [GO:0005737 "cytoplasm"
            evidence=IEA] [GO:0006417 "regulation of translation" evidence=IEA]
            [GO:0031047 "gene silencing by RNA" evidence=IEA] [GO:0051028 "mRNA
            transport" evidence=IEA] [GO:0006370 "7-methylguanosine mRNA
            capping" evidence=IEA] [GO:0006810 "transport" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 InterPro:IPR027157
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-020419-31
            GO:GO:0005634 GO:GO:0005737 GO:GO:0006417 GO:GO:0000184
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0031047 GO:GO:0000340
            GO:GO:0051028 eggNOG:COG0724 GO:GO:0006370 GO:GO:0045292
            HOGENOM:HOG000217589 OrthoDB:EOG470TJG PANTHER:PTHR18847
            HSSP:P52298 KO:K12883 CTD:22916 GeneTree:ENSGT00390000003197
            OMA:RQDYDPA GO:GO:0046833 GO:GO:0006408 EMBL:AY099530 EMBL:AL953867
            EMBL:BC083529 IPI:IPI00487113 RefSeq:NP_775356.1 UniGene:Dr.83993
            ProteinModelPortal:Q8JGR6 SMR:Q8JGR6 STRING:Q8JGR6
            Ensembl:ENSDART00000008365 GeneID:192325 KEGG:dre:192325
            InParanoid:Q8JGR6 NextBio:20797161 Bgee:Q8JGR6 Uniprot:Q8JGR6
        Length = 155

 Score = 123 (48.4 bits), Expect = 2.2e-07, P = 2.2e-07
 Identities = 30/88 (34%), Positives = 49/88 (55%)

Query:   188 LFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEM 247
             L+V  LSFYT+E+ +   F   G++  + I +DKI K + G+ F+EY T   A  A++ +
Sbjct:    41 LYVGNLSFYTTEEQVHELFAKCGDVKRIIIGLDKIKKTACGFCFVEYYTRADAENAMRFV 100

Query:   248 NGKIINGWMIVVDVA---KTTPKYSRGR 272
             NG  ++  +I  D     K   +Y RG+
Sbjct:   101 NGTRLDDRIIRTDWDAGFKEGRQYGRGK 128


>UNIPROTKB|P09651 [details] [associations]
            symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0019048 "virus-host interaction" evidence=IEA]
            [GO:0051028 "mRNA transport" evidence=IEA] [GO:0071013 "catalytic
            step 2 spliceosome" evidence=IDA] [GO:0030529 "ribonucleoprotein
            complex" evidence=IDA] [GO:0000398 "mRNA splicing, via spliceosome"
            evidence=IC;TAS] [GO:0003723 "RNA binding" evidence=TAS]
            [GO:0006397 "mRNA processing" evidence=TAS] [GO:0003727
            "single-stranded RNA binding" evidence=IC] [GO:0005654
            "nucleoplasm" evidence=IDA;TAS] [GO:0005737 "cytoplasm"
            evidence=IDA] [GO:0006405 "RNA export from nucleus" evidence=IC]
            [GO:0051170 "nuclear import" evidence=IDA] [GO:0003697
            "single-stranded DNA binding" evidence=IDA] [GO:0051168 "nuclear
            export" evidence=IDA] [GO:0005681 "spliceosomal complex"
            evidence=IDA] [GO:0008380 "RNA splicing" evidence=TAS] [GO:0010467
            "gene expression" evidence=TAS] [GO:0005634 "nucleus" evidence=IDA]
            [GO:0005730 "nucleolus" evidence=IDA] [GO:0045111 "intermediate
            filament cytoskeleton" evidence=IDA] Reactome:REACT_71
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0005737 GO:GO:0019048 GO:GO:0005654
            GO:GO:0005730 GO:GO:0000166 Reactome:REACT_1675 GO:GO:0003727
            Gene3D:3.30.70.330 EMBL:CH471054 GO:GO:0045111 GO:GO:0003697
            Pathway_Interaction_DB:ar_pathway GO:GO:0051028 GO:GO:0000398
            GO:GO:0071013 eggNOG:COG0724 GO:GO:0000380 HOVERGEN:HBG002295
            GO:GO:0051170 GO:GO:0006405 HOGENOM:HOG000234442 KO:K12741
            OrthoDB:EOG4HQDKF CTD:3178 OMA:IEVEIMT EMBL:X12671 EMBL:X06747
            EMBL:X79536 EMBL:AK291113 EMBL:AC078778 EMBL:BC002355 EMBL:BC009600
            EMBL:BC012158 EMBL:BC033714 EMBL:BC052296 EMBL:BC070315
            EMBL:BC074502 EMBL:BC103707 EMBL:X04347 IPI:IPI00215965
            IPI:IPI00465365 IPI:IPI00797148 PIR:S02061 PIR:S12520
            RefSeq:NP_002127.1 RefSeq:NP_112420.1 UniGene:Hs.546261
            UniGene:Hs.655424 PDB:1HA1 PDB:1L3K PDB:1PGZ PDB:1PO6 PDB:1U1K
            PDB:1U1L PDB:1U1M PDB:1U1N PDB:1U1O PDB:1U1P PDB:1U1Q PDB:1U1R
            PDB:1UP1 PDB:2H4M PDB:2LYV PDB:2UP1 PDBsum:1HA1 PDBsum:1L3K
            PDBsum:1PGZ PDBsum:1PO6 PDBsum:1U1K PDBsum:1U1L PDBsum:1U1M
            PDBsum:1U1N PDBsum:1U1O PDBsum:1U1P PDBsum:1U1Q PDBsum:1U1R
            PDBsum:1UP1 PDBsum:2H4M PDBsum:2LYV PDBsum:2UP1 DisProt:DP00324
            ProteinModelPortal:P09651 SMR:P09651 DIP:DIP-29338N IntAct:P09651
            MINT:MINT-1035550 STRING:P09651 PhosphoSite:P09651 DMDM:288558857
            SWISS-2DPAGE:P09651 PaxDb:P09651 PRIDE:P09651
            Ensembl:ENST00000340913 Ensembl:ENST00000546500
            Ensembl:ENST00000547276 Ensembl:ENST00000547566 GeneID:3178
            KEGG:hsa:3178 UCSC:uc001sfl.3 UCSC:uc001sfm.3 UCSC:uc001sfn.3
            GeneCards:GC12P054674 H-InvDB:HIX0032087 H-InvDB:HIX0040127
            H-InvDB:HIX0202582 HGNC:HGNC:5031 HPA:CAB010894 HPA:HPA001666
            MIM:164017 neXtProt:NX_P09651 PharmGKB:PA162391113
            InParanoid:P09651 PhylomeDB:P09651 BindingDB:P09651
            ChEMBL:CHEMBL1955709 ChiTaRS:HNRNPA1 EvolutionaryTrace:P09651
            GenomeRNAi:3178 NextBio:12614 ArrayExpress:P09651 Bgee:P09651
            CleanEx:HS_HNRNPA1 Genevestigator:P09651 GermOnline:ENSG00000135486
            Uniprot:P09651
        Length = 372

 Score = 143 (55.4 bits), Expect = 2.2e-07, P = 2.2e-07
 Identities = 36/104 (34%), Positives = 60/104 (57%)

Query:   170 MVPSDSSEASPTQIKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGY 229
             M  S+S +  P Q++  KLF+ GLSF T++++LR+ FE +G L +  ++ D  +KRS+G+
Sbjct:     1 MSKSESPK-EPEQLR--KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGF 57

Query:   230 AFIEYTTEEAASAALKEMNGKIINGWMIVVDVAKTTPKYSRGRP 273
              F+ Y T E   AA+     K+ +G   VV+  +   +    RP
Sbjct:    58 GFVTYATVEEVDAAMNARPHKV-DGR--VVEPKRAVSREDSQRP 98


>UNIPROTKB|E2QYP1 [details] [associations]
            symbol:HNRNPA1 "Uncharacterized protein" species:9615
            "Canis lupus familiaris" [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            GeneTree:ENSGT00550000074566 EMBL:AAEX03014967
            ProteinModelPortal:E2QYP1 PRIDE:E2QYP1 Ensembl:ENSCAFT00000010628
            NextBio:20853043 Uniprot:E2QYP1
        Length = 373

 Score = 143 (55.4 bits), Expect = 2.2e-07, P = 2.2e-07
 Identities = 36/104 (34%), Positives = 60/104 (57%)

Query:   170 MVPSDSSEASPTQIKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGY 229
             M  S+S +  P Q++  KLF+ GLSF T++++LR+ FE +G L +  ++ D  +KRS+G+
Sbjct:     1 MSKSESPK-EPEQLR--KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGF 57

Query:   230 AFIEYTTEEAASAALKEMNGKIINGWMIVVDVAKTTPKYSRGRP 273
              F+ Y T E   AA+     K+ +G   VV+  +   +    RP
Sbjct:    58 GFVTYATVEEVDAAMNARPHKV-DGR--VVEPKRAVSREDSQRP 98


>UNIPROTKB|D4ACJ7 [details] [associations]
            symbol:Hnrnpa1 "RCG50547, isoform CRA_b" species:10116
            "Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            RGD:69234 GO:GO:0005737 GO:GO:0005654 GO:GO:0005730 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003697 GO:GO:0071013 GO:GO:0051168
            EMBL:CH474035 GO:GO:0000380 GO:GO:0051170 OrthoDB:EOG4HQDKF
            OMA:IEVEIMT IPI:IPI00781944 SMR:D4ACJ7 Ensembl:ENSRNOT00000055284
            Uniprot:D4ACJ7
        Length = 373

 Score = 143 (55.4 bits), Expect = 2.2e-07, P = 2.2e-07
 Identities = 36/104 (34%), Positives = 60/104 (57%)

Query:   170 MVPSDSSEASPTQIKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGY 229
             M  S+S +  P Q++  KLF+ GLSF T++++LR+ FE +G L +  ++ D  +KRS+G+
Sbjct:     1 MSKSESPK-EPEQLR--KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGF 57

Query:   230 AFIEYTTEEAASAALKEMNGKIINGWMIVVDVAKTTPKYSRGRP 273
              F+ Y T E   AA+     K+ +G   VV+  +   +    RP
Sbjct:    58 GFVTYATVEEVDAAMNARPHKV-DGR--VVEPKRAVSREDSQRP 98


>ZFIN|ZDB-GENE-040426-1094 [details] [associations]
            symbol:tra2b "transformer 2 beta homolog
            (Drosophila)" species:7955 "Danio rerio" [GO:0000166 "nucleotide
            binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
            evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-040426-1094
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HSSP:Q9V535
            HOVERGEN:HBG107480 KO:K12897 CTD:6434 EMBL:BC049051 IPI:IPI00493400
            RefSeq:NP_957491.1 UniGene:Dr.9221 ProteinModelPortal:Q7ZUG9
            SMR:Q7ZUG9 STRING:Q7ZUG9 PRIDE:Q7ZUG9 GeneID:394172 KEGG:dre:394172
            InParanoid:Q7ZUG9 NextBio:20815117 ArrayExpress:Q7ZUG9 Bgee:Q7ZUG9
            Uniprot:Q7ZUG9
        Length = 278

 Score = 140 (54.3 bits), Expect = 2.4e-07, P = 2.4e-07
 Identities = 35/92 (38%), Positives = 51/92 (55%)

Query:   188 LFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEM 247
             L V GLS YT+E+ LR  F  +G L +V I+ D+ S+RS+G+A + +   E +  A +  
Sbjct:   125 LGVFGLSLYTTERDLREVFSKYGPLSDVCIVYDQQSRRSRGFALVYFENREDSKEAKERA 184

Query:   248 NGKIINGWMIVVDVAKT------TPKYSRGRP 273
             NG  ++G  I VD + T      TP    GRP
Sbjct:   185 NGMELDGRRIRVDYSITKGPHTPTPGIYMGRP 216


>CGD|CAL0005232 [details] [associations]
            symbol:orf19.6090 species:5476 "Candida albicans" [GO:0005634
            "nucleus" evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA]
            [GO:0044011 "single-species biofilm formation on inanimate
            substrate" evidence=IMP] [GO:0003723 "RNA binding" evidence=IEA]
            [GO:0003697 "single-stranded DNA binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 CGD:CAL0005232 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003676 EMBL:AACQ01000036 EMBL:AACQ01000035 GO:GO:0044011
            eggNOG:COG0724 KO:K11294 RefSeq:XP_718946.1 RefSeq:XP_719050.1
            ProteinModelPortal:Q5AB84 STRING:Q5AB84 GeneID:3639341
            GeneID:3639464 KEGG:cal:CaO19.13509 KEGG:cal:CaO19.6090
            Uniprot:Q5AB84
        Length = 400

 Score = 143 (55.4 bits), Expect = 2.6e-07, P = 2.6e-07
 Identities = 30/104 (28%), Positives = 59/104 (56%)

Query:   167 QNSMVPSDSSEASPTQIKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRS 226
             +    P   S+ + +  +   LFV  LS+   +  L+  FE  G ++  ++IM++ + +S
Sbjct:   149 EEESAPVKKSKPAASTEEPATLFVGRLSWNIDDAWLKREFEHIGGVIGARVIMERATGKS 208

Query:   227 KGYAFIEYTTEEAASAALKEMNGKIINGWMIVVDVAKTTPKYSR 270
             +GY ++++ ++ AA  AL+EM GK I+G  I +D++   P  S+
Sbjct:   209 RGYGYVDFESKSAAEKALEEMQGKEIDGRPINLDMSTGKPHASK 252


>UNIPROTKB|Q5AB84 [details] [associations]
            symbol:NSR1 "Potential nuclear localization sequence
            binding protein Nsr1p" species:237561 "Candida albicans SC5314"
            [GO:0044011 "single-species biofilm formation on inanimate
            substrate" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 CGD:CAL0005232
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AACQ01000036
            EMBL:AACQ01000035 GO:GO:0044011 eggNOG:COG0724 KO:K11294
            RefSeq:XP_718946.1 RefSeq:XP_719050.1 ProteinModelPortal:Q5AB84
            STRING:Q5AB84 GeneID:3639341 GeneID:3639464 KEGG:cal:CaO19.13509
            KEGG:cal:CaO19.6090 Uniprot:Q5AB84
        Length = 400

 Score = 143 (55.4 bits), Expect = 2.6e-07, P = 2.6e-07
 Identities = 30/104 (28%), Positives = 59/104 (56%)

Query:   167 QNSMVPSDSSEASPTQIKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRS 226
             +    P   S+ + +  +   LFV  LS+   +  L+  FE  G ++  ++IM++ + +S
Sbjct:   149 EEESAPVKKSKPAASTEEPATLFVGRLSWNIDDAWLKREFEHIGGVIGARVIMERATGKS 208

Query:   227 KGYAFIEYTTEEAASAALKEMNGKIINGWMIVVDVAKTTPKYSR 270
             +GY ++++ ++ AA  AL+EM GK I+G  I +D++   P  S+
Sbjct:   209 RGYGYVDFESKSAAEKALEEMQGKEIDGRPINLDMSTGKPHASK 252


>ZFIN|ZDB-GENE-040628-1 [details] [associations]
            symbol:rbm24a "RNA binding motif protein 24a"
            species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0003730 "mRNA 3'-UTR binding" evidence=ISS] [GO:0043488
            "regulation of mRNA stability" evidence=ISS] [GO:0010830
            "regulation of myotube differentiation" evidence=ISS] [GO:0003228
            "atrial cardiac muscle tissue development" evidence=IMP]
            [GO:0072358 "cardiovascular system development" evidence=IGI]
            [GO:0001947 "heart looping" evidence=IMP] [GO:0003723 "RNA binding"
            evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0030154 "cell
            differentiation" evidence=IEA] [GO:0005737 "cytoplasm"
            evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-040628-1 GO:GO:0005634
            GO:GO:0005737 GO:GO:0030154 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003730 GO:GO:0001947 GO:GO:0043488 eggNOG:COG0724
            HOGENOM:HOG000276232 GO:GO:0010830 HSSP:Q9H0Z9 HOVERGEN:HBG108399
            EMBL:AB080735 IPI:IPI00506301 RefSeq:NP_998030.1 UniGene:Dr.159425
            ProteinModelPortal:Q76LC6 SMR:Q76LC6 STRING:Q76LC6
            Ensembl:ENSDART00000110862 GeneID:405801 KEGG:dre:405801 CTD:405801
            GeneTree:ENSGT00390000002308 OrthoDB:EOG4KWJVF NextBio:20817766
            ArrayExpress:Q76LC6 Bgee:Q76LC6 GO:GO:0003228 Uniprot:Q76LC6
        Length = 230

 Score = 137 (53.3 bits), Expect = 2.6e-07, P = 2.6e-07
 Identities = 30/76 (39%), Positives = 47/76 (61%)

Query:   187 KLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKE 246
             K+FV GL ++T++ +LR  FE FGE+ E  +I D+ + +S+GY F+      AA  A K+
Sbjct:    12 KIFVGGLPYHTTDSSLRKYFEVFGEIEEAVVITDRQTGKSRGYGFVTMADRSAADRACKD 71

Query:   247 MNGKIINGWMIVVDVA 262
              N  II+G    V++A
Sbjct:    72 PN-PIIDGRKANVNLA 86


>UNIPROTKB|C1BY64 [details] [associations]
            symbol:ncbp2 "Nuclear cap-binding protein subunit 2"
            species:8010 "Esox lucius" [GO:0000340 "RNA 7-methylguanosine cap
            binding" evidence=ISS] [GO:0006408 "snRNA export from nucleus"
            evidence=ISS] [GO:0008380 "RNA splicing" evidence=ISS] [GO:0045292
            "mRNA cis splicing, via spliceosome" evidence=ISS] [GO:0046833
            "positive regulation of RNA export from nucleus" evidence=ISS]
            InterPro:IPR000504 InterPro:IPR012677 InterPro:IPR027157
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
            GO:GO:0005737 GO:GO:0006417 GO:GO:0000184 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0031047 GO:GO:0000340 GO:GO:0051028
            GO:GO:0006370 GO:GO:0045292 PANTHER:PTHR18847 GO:GO:0046833
            GO:GO:0006408 EMBL:BT079543 ProteinModelPortal:C1BY64
            Uniprot:C1BY64
        Length = 155

 Score = 122 (48.0 bits), Expect = 2.8e-07, P = 2.8e-07
 Identities = 29/92 (31%), Positives = 51/92 (55%)

Query:   184 KTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAA 243
             ++  L+V  LSFYT+E+ +   F   G++  + I +DK+ K + G+ F+EY T   A  A
Sbjct:    37 QSNTLYVGNLSFYTTEEQVYELFSKSGDVKRIIIGLDKVKKTACGFCFVEYYTRADAENA 96

Query:   244 LKEMNGKIINGWMIVVDVA---KTTPKYSRGR 272
             ++ +NG  ++  +I  D     K   +Y RG+
Sbjct:    97 MRFVNGTRLDDRIIRTDWDAGFKEGRQYGRGK 128


>UNIPROTKB|P52299 [details] [associations]
            symbol:ncbp2 "Nuclear cap-binding protein subunit 2"
            species:8355 "Xenopus laevis" [GO:0000184 "nuclear-transcribed mRNA
            catabolic process, nonsense-mediated decay" evidence=ISS]
            [GO:0000340 "RNA 7-methylguanosine cap binding" evidence=ISS]
            [GO:0005634 "nucleus" evidence=ISS] [GO:0005654 "nucleoplasm"
            evidence=ISS] [GO:0005737 "cytoplasm" evidence=ISS] [GO:0005845
            "mRNA cap binding complex" evidence=ISS] [GO:0006370
            "7-methylguanosine mRNA capping" evidence=ISS] [GO:0006408 "snRNA
            export from nucleus" evidence=IDA] [GO:0006446 "regulation of
            translational initiation" evidence=ISS] [GO:0008380 "RNA splicing"
            evidence=IDA] [GO:0045292 "mRNA cis splicing, via spliceosome"
            evidence=ISS] [GO:0046833 "positive regulation of RNA export from
            nucleus" evidence=IDA] [GO:0003723 "RNA binding" evidence=ISS]
            InterPro:IPR000504 InterPro:IPR012677 InterPro:IPR027157
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
            GO:GO:0005654 GO:GO:0000184 GO:GO:0000166 GO:GO:0006446
            Gene3D:3.30.70.330 GO:GO:0031047 GO:GO:0005845 GO:GO:0000340
            GO:GO:0051028 GO:GO:0006370 GO:GO:0045292 HOVERGEN:HBG052581
            PANTHER:PTHR18847 KO:K12883 CTD:22916 GO:GO:0046833 GO:GO:0006408
            EMBL:BC072902 EMBL:X84788 PIR:I51602 RefSeq:NP_001167476.1
            UniGene:Xl.43439 UniGene:Xl.81730 ProteinModelPortal:P52299
            SMR:P52299 GeneID:100380998 KEGG:xla:100380998
            Xenbase:XB-GENE-1005792 Uniprot:P52299
        Length = 153

 Score = 122 (48.0 bits), Expect = 2.8e-07, P = 2.8e-07
 Identities = 27/88 (30%), Positives = 49/88 (55%)

Query:   188 LFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEM 247
             L+V  LSFYT+E+ +   F   G++  + + +DK+ K + G+ F+EY T   A  A++ +
Sbjct:    39 LYVGNLSFYTTEEQIHELFSKSGDVKRIVMGLDKVKKTACGFCFVEYYTRADAEQAMRFI 98

Query:   248 NGKIINGWMIVVDVA---KTTPKYSRGR 272
             NG  ++  ++  D     K   +Y RG+
Sbjct:    99 NGTRLDDRIVRTDWDAGFKEGRQYGRGK 126


>UNIPROTKB|E1BUM0 [details] [associations]
            symbol:PPIE "Uncharacterized protein" species:9031 "Gallus
            gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
            "RNA binding" evidence=IEA] [GO:0003755 "peptidyl-prolyl cis-trans
            isomerase activity" evidence=IEA] [GO:0006457 "protein folding"
            evidence=IEA] InterPro:IPR000504 InterPro:IPR002130
            InterPro:IPR012677 InterPro:IPR016304 InterPro:IPR020892
            Pfam:PF00076 Pfam:PF00160 PIRSF:PIRSF001475 PRINTS:PR00153
            PROSITE:PS00170 PROSITE:PS50072 PROSITE:PS50102 SMART:SM00360
            GO:GO:0006457 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
            GO:GO:0003755 SUPFAM:SSF50891 GO:GO:0000413
            GeneTree:ENSGT00690000101651 CTD:10450 KO:K09564 OMA:AFIEFEL
            EMBL:AADN02043740 EMBL:AADN02043741 EMBL:AADN02043742
            EMBL:AADN02043743 IPI:IPI00575389 RefSeq:XP_423739.2
            UniGene:Gga.4709 ProteinModelPortal:E1BUM0
            Ensembl:ENSGALT00000021831 GeneID:426061 KEGG:gga:426061
            NextBio:20827786 ArrayExpress:E1BUM0 Uniprot:E1BUM0
        Length = 301

 Score = 140 (54.3 bits), Expect = 3.0e-07, P = 3.0e-07
 Identities = 34/91 (37%), Positives = 55/91 (60%)

Query:   185 TKK-LFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAA 243
             TK+ L+V GL+    EK L AAF  FG++ +++I +D  +++ +G+AF+E+   E A+AA
Sbjct:     4 TKRVLYVGGLAEEVDEKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAA 63

Query:   244 LKEMNGKIINGWMIVVDVAKTTP-KYSRGRP 273
             +  MN   + G  I V++AK    K    RP
Sbjct:    64 IDNMNESELFGRTIRVNLAKPMRIKEGSSRP 94


>UNIPROTKB|F1Q3G7 [details] [associations]
            symbol:HNRNPA1 "Uncharacterized protein" species:9615
            "Canis lupus familiaris" [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0005737 GO:GO:0005654 GO:GO:0005730
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003697 GO:GO:0071013
            GO:GO:0051168 GO:GO:0000380 GO:GO:0051170
            GeneTree:ENSGT00550000074566 EMBL:AAEX03014967
            Ensembl:ENSCAFT00000010627 OMA:QAQQGGW Uniprot:F1Q3G7
        Length = 384

 Score = 142 (55.0 bits), Expect = 3.1e-07, P = 3.1e-07
 Identities = 34/98 (34%), Positives = 56/98 (57%)

Query:   176 SEASPTQIKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYT 235
             S   P Q++  KLF+ GLSF T++++LR+ FE +G L +  ++ D  +KRS+G+ F+ Y 
Sbjct:    27 SPKEPEQLR--KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYA 84

Query:   236 TEEAASAALKEMNGKIINGWMIVVDVAKTTPKYSRGRP 273
             T E   AA+     K+ +G   VV+  +   +    RP
Sbjct:    85 TVEEVDAAMNARPHKV-DGR--VVEPKRAVSREDSQRP 119


>TAIR|locus:2011726 [details] [associations]
            symbol:AT1G76460 species:3702 "Arabidopsis thaliana"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
            acid binding" evidence=IEA;ISS] [GO:0003723 "RNA binding"
            evidence=ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0008150
            "biological_process" evidence=ND] [GO:0048573 "photoperiodism,
            flowering" evidence=RCA] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:CP002684
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 UniGene:At.43912
            UniGene:At.70089 IPI:IPI00542968 RefSeq:NP_565132.2
            UniGene:At.69045 ProteinModelPortal:F4I2E4 SMR:F4I2E4 PRIDE:F4I2E4
            EnsemblPlants:AT1G76460.1 GeneID:843979 KEGG:ath:AT1G76460
            OMA:YGPEYMY Uniprot:F4I2E4
        Length = 285

 Score = 139 (54.0 bits), Expect = 3.4e-07, P = 3.4e-07
 Identities = 36/88 (40%), Positives = 51/88 (57%)

Query:   187 KLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKE 246
             K+FV GL++ T  +TLR  FE +GE++E  +I DK + RSKGY F+ +   EAA  A  +
Sbjct:    25 KVFVGGLAWETQSETLRQHFEQYGEILEAVVIADKNTGRSKGYGFVTFRDPEAARRACAD 84

Query:   247 MNGKIINGWMIVVDVAKTTPKYSRGRPR 274
                 II+G     ++A      S GRPR
Sbjct:    85 PT-PIIDGRRANCNLA------SLGRPR 105


>TAIR|locus:2058573 [details] [associations]
            symbol:PAB4 "AT2G23350" species:3702 "Arabidopsis
            thaliana" [GO:0003723 "RNA binding" evidence=ISS] [GO:0003743
            "translation initiation factor activity" evidence=ISS] [GO:0046686
            "response to cadmium ion" evidence=IEP] [GO:0005829 "cytosol"
            evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
            InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
            InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
            PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005829
            GO:GO:0046686 EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AC002391 eggNOG:COG0724
            KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
            HOGENOM:HOG000217922 HSSP:P11940 OMA:MIRITYS EMBL:AY050859
            EMBL:AY079389 IPI:IPI00530940 PIR:T00497 RefSeq:NP_179916.1
            UniGene:At.25439 ProteinModelPortal:O22173 SMR:O22173 IntAct:O22173
            STRING:O22173 PaxDb:O22173 PRIDE:O22173 ProMEX:O22173
            EnsemblPlants:AT2G23350.1 GeneID:816867 KEGG:ath:AT2G23350
            TAIR:At2g23350 InParanoid:O22173 PhylomeDB:O22173
            ProtClustDB:CLSN2913301 Genevestigator:O22173 Uniprot:O22173
        Length = 662

 Score = 145 (56.1 bits), Expect = 3.4e-07, P = 3.4e-07
 Identities = 33/109 (30%), Positives = 56/109 (51%)

Query:   151 DENFGSENKDYGGNNLQNSMVPSDSSEASPTQIKTKKLFVTGLSFYTSEKTLRAAFEGFG 210
             D     +  +Y   N +   +   S ++S  +     LFV  L      KTL  AF G G
Sbjct:    99 DAEKAMQKLNYSYLNGKMIRITYSSRDSSARRSGVGNLFVKNLDKSVDNKTLHEAFSGCG 158

Query:   211 ELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVV 259
              +V  K+  D + + S+GY F+++ TE++A  A++++NGK++N   I V
Sbjct:   159 TIVSCKVATDHMGQ-SRGYGFVQFDTEDSAKNAIEKLNGKVLNDKQIFV 206


>ZFIN|ZDB-GENE-060312-43 [details] [associations]
            symbol:rbm24b "RNA binding motif protein 24b"
            species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0005575 "cellular_component" evidence=ND] [GO:0001947 "heart
            looping" evidence=IMP] [GO:0072358 "cardiovascular system
            development" evidence=IGI] [GO:0003228 "atrial cardiac muscle
            tissue development" evidence=IMP] [GO:0003229 "ventricular cardiac
            muscle tissue development" evidence=IMP] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            ZFIN:ZDB-GENE-060312-43 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003676 GO:GO:0001947 GO:GO:0003229
            GeneTree:ENSGT00390000002308 GO:GO:0003228 EMBL:CT027645
            IPI:IPI00898048 ProteinModelPortal:E9QCG4
            Ensembl:ENSDART00000127556 Bgee:E9QCG4 Uniprot:E9QCG4
        Length = 245

 Score = 137 (53.3 bits), Expect = 3.5e-07, P = 3.5e-07
 Identities = 30/76 (39%), Positives = 47/76 (61%)

Query:   187 KLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKE 246
             K+FV GL ++T++ +LR  FE FGE+ E  +I D+ + +S+GY F+      AA  A K+
Sbjct:    12 KIFVGGLPYHTTDSSLRKYFEVFGEIEEAVVITDRQTGKSRGYGFVTMADRSAAERACKD 71

Query:   247 MNGKIINGWMIVVDVA 262
              N  II+G    V++A
Sbjct:    72 PN-PIIDGRKANVNLA 86


>FB|FBgn0001215 [details] [associations]
            symbol:Hrb98DE "Heterogeneous nuclear ribonucleoprotein at
            98DE" species:7227 "Drosophila melanogaster" [GO:0030529
            "ribonucleoprotein complex" evidence=ISS;NAS;IDA;IPI] [GO:0003729
            "mRNA binding" evidence=ISS;NAS] [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0001745 "compound eye morphogenesis"
            evidence=IGI] [GO:0043565 "sequence-specific DNA binding"
            evidence=IDA] [GO:0000381 "regulation of alternative mRNA splicing,
            via spliceosome" evidence=IMP] [GO:0005703 "polytene chromosome
            puff" evidence=IDA] [GO:0033119 "negative regulation of RNA
            splicing" evidence=IMP] [GO:0005634 "nucleus" evidence=IDA]
            [GO:0045727 "positive regulation of translation" evidence=IMP]
            [GO:0048477 "oogenesis" evidence=IMP] [GO:0036099 "female germ-line
            stem cell maintenance" evidence=IMP] [GO:0048027 "mRNA 5'-UTR
            binding" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:AE014297
            GO:GO:0005634 GO:GO:0000166 GO:GO:0043565 Gene3D:3.30.70.330
            GO:GO:0048477 GO:GO:0048027 GO:GO:0030529 GO:GO:0033119
            GO:GO:0045727 eggNOG:COG0724 GO:GO:0005703 GO:GO:0000381
            GeneTree:ENSGT00700000104255 GO:GO:0036099 KO:K12741
            OrthoDB:EOG46WWRF EMBL:M15766 EMBL:M25545 EMBL:M28871 EMBL:M28872
            EMBL:M33955 EMBL:M31560 EMBL:M28870 EMBL:AY061448 PIR:A26459
            RefSeq:NP_524543.1 RefSeq:NP_733249.1 RefSeq:NP_733250.1
            RefSeq:NP_733251.1 RefSeq:NP_733252.1 RefSeq:NP_733253.1
            UniGene:Dm.7147 ProteinModelPortal:P07909 SMR:P07909 DIP:DIP-19217N
            IntAct:P07909 MINT:MINT-764040 STRING:P07909 PaxDb:P07909
            PRIDE:P07909 EnsemblMetazoa:FBtr0085300 EnsemblMetazoa:FBtr0085301
            GeneID:43385 KEGG:dme:Dmel_CG9983 CTD:43385 FlyBase:FBgn0001215
            InParanoid:P07909 OMA:INIVIDK PhylomeDB:P07909 ChiTaRS:Hrb98DE
            GenomeRNAi:43385 NextBio:833644 Bgee:P07909 GermOnline:CG9983
            Uniprot:P07909
        Length = 365

 Score = 141 (54.7 bits), Expect = 3.6e-07, P = 3.6e-07
 Identities = 38/119 (31%), Positives = 63/119 (52%)

Query:   156 SENKDYGGN-NLQNSMVPSDSSEASPTQIKTKKLFVTGLSFYTSEKTLRAAFEGFGELVE 214
             + N++  GN N  +   P DS    P  ++  KLF+ GL + T+++ L+A FE +G +V+
Sbjct:     3 NSNQNQNGNSNGHDDDFPQDSI-TEPEHMR--KLFIGGLDYRTTDENLKAHFEKWGNIVD 59

Query:   215 VKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVDVAKTTPKYSRGRP 273
             V ++ D  +KRS+G+ FI Y+       A K    KI +G   VV+  +  P+     P
Sbjct:    60 VVVMKDPRTKRSRGFGFITYSHSSMIDEAQKSRPHKI-DGR--VVEPKRAVPRQDIDSP 115

 Score = 130 (50.8 bits), Expect = 6.8e-06, P = 6.8e-06
 Identities = 32/94 (34%), Positives = 52/94 (55%)

Query:   174 DSSEASPTQIKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIE 233
             DS  A  T    KKLFV  L     E+++R  F+ FG +V++ I++DK + + +G+AF+E
Sbjct:   113 DSPNAGAT---VKKLFVGALKDDHDEQSIRDYFQHFGNIVDINIVIDKETGKKRGFAFVE 169

Query:   234 YTTEEAASAALKEMNGKIINGWMIVVDVAKTTPK 267
             +   +     + +   ++ NG M  VDV K  PK
Sbjct:   170 FDDYDPVDKVVLQKQHQL-NGKM--VDVKKALPK 200


>UNIPROTKB|F1NIR6 [details] [associations]
            symbol:NCBP2 "Nuclear cap-binding protein subunit 2"
            species:9031 "Gallus gallus" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0000339 "RNA cap binding" evidence=IEA]
            [GO:0005846 "nuclear cap binding complex" evidence=IEA] [GO:0045292
            "mRNA cis splicing, via spliceosome" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 InterPro:IPR027157
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 PANTHER:PTHR18847
            GeneTree:ENSGT00390000003197 OMA:RQDYDPA EMBL:AADN02020536
            IPI:IPI00597191 ProteinModelPortal:F1NIR6
            Ensembl:ENSGALT00000011075 Uniprot:F1NIR6
        Length = 158

 Score = 121 (47.7 bits), Expect = 3.6e-07, P = 3.6e-07
 Identities = 29/92 (31%), Positives = 51/92 (55%)

Query:   184 KTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAA 243
             K+  L+V  LSFYT+E+ +   F   G++ ++ + +DK+ K + G+ F+EY     A  A
Sbjct:    40 KSCTLYVGNLSFYTTEEQIHELFGKSGDIKKIIMGLDKVKKTACGFCFVEYYARGDAENA 99

Query:   244 LKEMNGKIINGWMIVVDVA---KTTPKYSRGR 272
             ++ +NG  ++  +I  D     K   +Y RGR
Sbjct:   100 MRYINGTRLDDRIIRTDWDAGFKEGRQYGRGR 131


>UNIPROTKB|F1RXK2 [details] [associations]
            symbol:NCBP2L "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0045292 "mRNA cis splicing, via spliceosome"
            evidence=IEA] [GO:0005846 "nuclear cap binding complex"
            evidence=IEA] [GO:0000339 "RNA cap binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 InterPro:IPR027157 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            OMA:GFREGQQ PANTHER:PTHR18847 GeneTree:ENSGT00390000003197
            EMBL:FP245415 ProteinModelPortal:F1RXK2 Ensembl:ENSSSCT00000013736
            Uniprot:F1RXK2
        Length = 156

 Score = 121 (47.7 bits), Expect = 3.6e-07, P = 3.6e-07
 Identities = 30/109 (27%), Positives = 56/109 (51%)

Query:   167 QNSMVPSDSSEASPTQIKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRS 226
             Q+     D+ E     +++  L+V  LS YT+E+ +   F   G++  V + +D I K +
Sbjct:    20 QDQQFRGDNEEHEKLLMESSTLYVENLSIYTTEEQIFELFSRCGDVKNVFMGLDNIKKTA 79

Query:   227 KGYAFIEYTTEEAASAALKEMNGKIINGWMIVV--DVA-KTTPKYSRGR 272
              G+ F+EY     A  A++ +NG +++  +I    D+  K   +Y+ GR
Sbjct:    80 CGFCFVEYHLRADAENAMRFLNGTLLDDRIIHTKWDIGFKEGRQYAHGR 128


>UNIPROTKB|C0H859 [details] [associations]
            symbol:ncbp2 "Nuclear cap-binding protein subunit 2"
            species:8030 "Salmo salar" [GO:0000340 "RNA 7-methylguanosine cap
            binding" evidence=ISS] [GO:0006408 "snRNA export from nucleus"
            evidence=ISS] [GO:0008380 "RNA splicing" evidence=ISS] [GO:0045292
            "mRNA cis splicing, via spliceosome" evidence=ISS] [GO:0046833
            "positive regulation of RNA export from nucleus" evidence=ISS]
            InterPro:IPR000504 InterPro:IPR012677 InterPro:IPR027157
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
            GO:GO:0005737 GO:GO:0006417 GO:GO:0000184 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0031047 GO:GO:0000340 GO:GO:0051028
            GO:GO:0006370 GO:GO:0045292 PANTHER:PTHR18847 GO:GO:0046833
            GO:GO:0006408 EMBL:BT043732 EMBL:BT058515 EMBL:BT060223
            UniGene:Ssa.8109 ProteinModelPortal:C0H859 Uniprot:C0H859
        Length = 155

 Score = 121 (47.7 bits), Expect = 3.6e-07, P = 3.6e-07
 Identities = 29/88 (32%), Positives = 49/88 (55%)

Query:   188 LFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEM 247
             L+V  LSFYT+E+ +   F   G++  + I +DK+ K + G+ F+EY T   A  A++ +
Sbjct:    41 LYVGNLSFYTTEEQVYELFSKSGDVKRIIIGLDKVKKTACGFCFVEYYTRTDAENAMRFV 100

Query:   248 NGKIINGWMIVVDVA---KTTPKYSRGR 272
             NG  ++  +I  D     K   +Y RG+
Sbjct:   101 NGTRLDDRIIRTDWDAGFKEGRQYGRGK 128


>UNIPROTKB|Q3AF33 [details] [associations]
            symbol:CHY_0389 "RNA-binding protein" species:246194
            "Carboxydothermus hydrogenoformans Z-2901" [GO:0008150
            "biological_process" evidence=ND] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 EMBL:CP000141 GenomeReviews:CP000141_GR
            Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
            HOGENOM:HOG000276232 OMA:KRVHIPT RefSeq:YP_359251.1
            ProteinModelPortal:Q3AF33 STRING:Q3AF33 GeneID:3728526
            KEGG:chy:CHY_0389 PATRIC:21273941
            BioCyc:CHYD246194:GJCN-390-MONOMER Uniprot:Q3AF33
        Length = 83

 Score = 121 (47.7 bits), Expect = 3.6e-07, P = 3.6e-07
 Identities = 27/79 (34%), Positives = 45/79 (56%)

Query:   185 TKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAAL 244
             TK L+V  L +    + L+     FGE++  ++I++K + RS+GY FIE   E+A    +
Sbjct:     2 TKTLYVGNLPWKIRSEQLQEIASEFGEVIGARVILEKSTGRSRGYGFIEVRDEDAEKF-M 60

Query:   245 KEMNGKIINGWMIVVDVAK 263
               +NGK + G  +VV  A+
Sbjct:    61 TGLNGKEVEGRQLVVSEAR 79


>TIGR_CMR|CHY_0389 [details] [associations]
            symbol:CHY_0389 "RNA-binding protein" species:246194
            "Carboxydothermus hydrogenoformans Z-2901" [GO:0003723 "RNA
            binding" evidence=ISS] [GO:0008150 "biological_process"
            evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 EMBL:CP000141
            GenomeReviews:CP000141_GR Gene3D:3.30.70.330 GO:GO:0003676
            eggNOG:COG0724 HOGENOM:HOG000276232 OMA:KRVHIPT RefSeq:YP_359251.1
            ProteinModelPortal:Q3AF33 STRING:Q3AF33 GeneID:3728526
            KEGG:chy:CHY_0389 PATRIC:21273941
            BioCyc:CHYD246194:GJCN-390-MONOMER Uniprot:Q3AF33
        Length = 83

 Score = 121 (47.7 bits), Expect = 3.6e-07, P = 3.6e-07
 Identities = 27/79 (34%), Positives = 45/79 (56%)

Query:   185 TKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAAL 244
             TK L+V  L +    + L+     FGE++  ++I++K + RS+GY FIE   E+A    +
Sbjct:     2 TKTLYVGNLPWKIRSEQLQEIASEFGEVIGARVILEKSTGRSRGYGFIEVRDEDAEKF-M 60

Query:   245 KEMNGKIINGWMIVVDVAK 263
               +NGK + G  +VV  A+
Sbjct:    61 TGLNGKEVEGRQLVVSEAR 79


>WB|WBGene00011156 [details] [associations]
            symbol:R09B3.3 species:6239 "Caenorhabditis elegans"
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0009792
            "embryo development ending in birth or egg hatching" evidence=IMP]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0009792 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003676 eggNOG:COG0724 HOGENOM:HOG000276232
            GeneTree:ENSGT00550000074641 EMBL:Z81108 HSSP:P33240 PIR:T24068
            RefSeq:NP_493023.1 ProteinModelPortal:O45713 SMR:O45713
            IntAct:O45713 STRING:O45713 PaxDb:O45713 EnsemblMetazoa:R09B3.3
            GeneID:173071 KEGG:cel:CELE_R09B3.3 UCSC:R09B3.3 CTD:173071
            WormBase:R09B3.3 InParanoid:O45713 OMA:KRVHIPT NextBio:878159
            Uniprot:O45713
        Length = 85

 Score = 121 (47.7 bits), Expect = 3.6e-07, P = 3.6e-07
 Identities = 26/76 (34%), Positives = 44/76 (57%)

Query:   188 LFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEM 247
             ++V    F T+E  L   F   G +  V+I+ D+ + R +G+AF+E+T E AA  A+ + 
Sbjct:     6 VYVGNAPFQTTEDDLGNYFSQAGNVSNVRIVCDRETGRPRGFAFVEFTEEAAAQRAVDQF 65

Query:   248 NGKIINGWMIVVDVAK 263
             NG   NG  + V++A+
Sbjct:    66 NGVDFNGRALRVNLAQ 81


>UNIPROTKB|O45713 [details] [associations]
            symbol:R09B3.3 "Protein R09B3.3" species:6239
            "Caenorhabditis elegans" [GO:0005515 "protein binding"
            evidence=IPI] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 GO:GO:0009792 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
            HOGENOM:HOG000276232 GeneTree:ENSGT00550000074641 EMBL:Z81108
            HSSP:P33240 PIR:T24068 RefSeq:NP_493023.1 ProteinModelPortal:O45713
            SMR:O45713 IntAct:O45713 STRING:O45713 PaxDb:O45713
            EnsemblMetazoa:R09B3.3 GeneID:173071 KEGG:cel:CELE_R09B3.3
            UCSC:R09B3.3 CTD:173071 WormBase:R09B3.3 InParanoid:O45713
            OMA:KRVHIPT NextBio:878159 Uniprot:O45713
        Length = 85

 Score = 121 (47.7 bits), Expect = 3.6e-07, P = 3.6e-07
 Identities = 26/76 (34%), Positives = 44/76 (57%)

Query:   188 LFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEM 247
             ++V    F T+E  L   F   G +  V+I+ D+ + R +G+AF+E+T E AA  A+ + 
Sbjct:     6 VYVGNAPFQTTEDDLGNYFSQAGNVSNVRIVCDRETGRPRGFAFVEFTEEAAAQRAVDQF 65

Query:   248 NGKIINGWMIVVDVAK 263
             NG   NG  + V++A+
Sbjct:    66 NGVDFNGRALRVNLAQ 81


>WB|WBGene00004390 [details] [associations]
            symbol:rnp-7 species:6239 "Caenorhabditis elegans"
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0009792
            "embryo development ending in birth or egg hatching" evidence=IMP]
            [GO:0000003 "reproduction" evidence=IMP] [GO:0040035 "hermaphrodite
            genitalia development" evidence=IMP] [GO:0040007 "growth"
            evidence=IMP] [GO:0002119 "nematode larval development"
            evidence=IMP] [GO:0007281 "germ cell development" evidence=IMP]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0009792 GO:GO:0040007 GO:GO:0002119
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0040035
            GO:GO:0007281 eggNOG:COG0724 HSSP:P09651 EMBL:FO080149
            HOGENOM:HOG000236289 KO:K11093 InterPro:IPR022023 Pfam:PF12220
            GeneTree:ENSGT00530000063750 PIR:G88499 RefSeq:NP_498565.2
            ProteinModelPortal:Q09584 SMR:Q09584 DIP:DIP-25425N IntAct:Q09584
            MINT:MINT-229501 STRING:Q09584 PaxDb:Q09584
            EnsemblMetazoa:K04G7.10.1 EnsemblMetazoa:K04G7.10.2 GeneID:176002
            KEGG:cel:CELE_K04G7.10 UCSC:K04G7.10 CTD:176002 WormBase:K04G7.10
            InParanoid:Q09584 OMA:THLLPPN NextBio:890690 Uniprot:Q09584
        Length = 332

 Score = 140 (54.3 bits), Expect = 3.9e-07, P = 3.9e-07
 Identities = 35/101 (34%), Positives = 58/101 (57%)

Query:   172 PSDSSEASPTQIKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAF 231
             P+++  AS    +T  LFV  +++ TSE  LR  FE +G++ ++ ++ D+  K  +GYAF
Sbjct:    92 PAENPRASEDPYRT--LFVGRINYETSESKLRREFEAYGKIKKLTMVHDEAGK-PRGYAF 148

Query:   232 IEYTTEEAASAALKEMNGKIINGWMIVVDVAKTTPKYSRGR 272
             IEY+ +     A K+ +G  ++G  +VVD       Y RGR
Sbjct:   149 IEYSDKAEMHTAYKKADGIKVDGKRLVVD-------YERGR 182


>UNIPROTKB|F1M6U1 [details] [associations]
            symbol:F1M6U1 "Uncharacterized protein" species:10116
            "Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
            Pfam:PF11627 IPI:IPI00362299 Ensembl:ENSRNOT00000007800
            Uniprot:F1M6U1
        Length = 252

 Score = 137 (53.3 bits), Expect = 3.9e-07, P = 3.9e-07
 Identities = 31/87 (35%), Positives = 51/87 (58%)

Query:   187 KLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKE 246
             KLF+ GLSF T++++LR+ FE +G L +  ++ D  +KR +G+ F+ YTT E   AA+  
Sbjct:     8 KLFIDGLSFETTDESLRSHFERWGTLTDCVVMRDPNTKRPRGFGFVTYTTVEEVDAAMNA 67

Query:   247 MNGKIINGWMIVVDVAKTTPKYSRGRP 273
                K+ +G   VV+  +   +    RP
Sbjct:    68 RPHKV-DGR--VVEPKRAVSREDSQRP 91


>FB|FBgn0010263 [details] [associations]
            symbol:Rbp9 "RNA-binding protein 9" species:7227 "Drosophila
            melanogaster" [GO:0003729 "mRNA binding" evidence=ISS;NAS]
            [GO:0003730 "mRNA 3'-UTR binding" evidence=TAS] [GO:0007293
            "germarium-derived egg chamber formation" evidence=TAS] [GO:0005634
            "nucleus" evidence=TAS] [GO:0003723 "RNA binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0048477
            "oogenesis" evidence=IMP] [GO:0036093 "germ cell proliferation"
            evidence=IMP] [GO:0060856 "establishment of blood-brain barrier"
            evidence=IMP] InterPro:IPR000504 InterPro:IPR002343
            InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
            PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003730 GO:GO:0007293 TIGRFAMs:TIGR01661
            HSSP:P26378 GO:GO:0060856 FlyBase:FBgn0010263 EMBL:S55886
            ProteinModelPortal:Q26293 SMR:Q26293 STRING:Q26293 PRIDE:Q26293
            InParanoid:Q26293 ArrayExpress:Q26293 Bgee:Q26293 Uniprot:Q26293
        Length = 444

 Score = 142 (55.0 bits), Expect = 4.0e-07, P = 4.0e-07
 Identities = 34/116 (29%), Positives = 59/116 (50%)

Query:   156 SENKDYGGNNLQNSMVPSDSSEASPTQIKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEV 215
             + N +   NN  N+   ++++   P   KT  L V  L    S+  +R+ F  FGE+   
Sbjct:    82 NNNNNNTNNNNNNNATANNNNNNEPDP-KTN-LIVNYLPQTMSQDEIRSLFVSFGEVESC 139

Query:   216 KIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVDVAKTTPKYSRG 271
             K+I DK++ +S GY F+ Y  +E A  A+  +NG  +    I V +A+ + +  +G
Sbjct:   140 KLIRDKVTGQSLGYGFVNYVKQEDAEKAINALNGLRLQNKTIKVSIARPSSESIKG 195

 Score = 113 (44.8 bits), Expect = 0.00082, P = 0.00082
 Identities = 28/92 (30%), Positives = 45/92 (48%)

Query:   163 GNNLQNSMVPSDSSEASPTQIKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKI 222
             G  LQN  +    +  S   IK   L+V+GL    ++  L + F  +G+++  +I+ D I
Sbjct:   173 GLRLQNKTIKVSIARPSSESIKGANLYVSGLPKNMTQSDLESLFSPYGKIITSRILCDNI 232

Query:   223 SKR-----SKGYAFIEYTTEEAASAALKEMNG 249
             +       SKG  FI +     A  A+KE+NG
Sbjct:   233 TGEHAAGLSKGVGFIRFDQRFEADRAIKELNG 264


>RGD|1311411 [details] [associations]
            symbol:Ppie "peptidylprolyl isomerase E (cyclophilin E)"
            species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0003755 "peptidyl-prolyl cis-trans isomerase activity"
            evidence=IEA] [GO:0005634 "nucleus" evidence=ISO] [GO:0006355
            "regulation of transcription, DNA-dependent" evidence=ISO]
            [GO:0006457 "protein folding" evidence=IEA] [GO:0045070 "positive
            regulation of viral genome replication" evidence=ISO] [GO:0071013
            "catalytic step 2 spliceosome" evidence=ISO] InterPro:IPR000504
            InterPro:IPR002130 InterPro:IPR012677 InterPro:IPR020892
            Pfam:PF00076 Pfam:PF00160 PRINTS:PR00153 PROSITE:PS00170
            PROSITE:PS50072 PROSITE:PS50102 SMART:SM00360 RGD:1311411
            GO:GO:0006457 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            HOGENOM:HOG000065981 GO:GO:0003755 SUPFAM:SSF50891 GO:GO:0000413
            GeneTree:ENSGT00690000101651 HOVERGEN:HBG001065 HSSP:P52011
            CTD:10450 KO:K09564 EMBL:AY325152 IPI:IPI00382259
            RefSeq:NP_001041333.1 UniGene:Rn.18887 SMR:Q7TP89
            Ensembl:ENSRNOT00000043799 GeneID:298508 KEGG:rno:298508
            UCSC:RGD:1311411 NextBio:643802 Genevestigator:Q7TP89
            Uniprot:Q7TP89
        Length = 255

 Score = 137 (53.3 bits), Expect = 4.1e-07, P = 4.1e-07
 Identities = 33/91 (36%), Positives = 55/91 (60%)

Query:   185 TKK-LFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAA 243
             TK+ L+V GL+    +K L AAF  FG++ +++I +D  +++ +G+AF+E+   E A+AA
Sbjct:     4 TKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAA 63

Query:   244 LKEMNGKIINGWMIVVDVAKTTP-KYSRGRP 273
             +  MN   + G  I V++AK    K    RP
Sbjct:    64 IDNMNESELFGRTIRVNLAKPMRIKEGSSRP 94


>UNIPROTKB|E1BLB7 [details] [associations]
            symbol:RBM38 "Uncharacterized protein" species:9913 "Bos
            taurus" [GO:0070935 "3'-UTR-mediated mRNA stabilization"
            evidence=IEA] [GO:0043484 "regulation of RNA splicing"
            evidence=IEA] [GO:0010830 "regulation of myotube differentiation"
            evidence=IEA] [GO:0008285 "negative regulation of cell
            proliferation" evidence=IEA] [GO:0007050 "cell cycle arrest"
            evidence=IEA] [GO:0006978 "DNA damage response, signal transduction
            by p53 class mediator resulting in transcription of p21 class
            mediator" evidence=IEA] [GO:0006977 "DNA damage response, signal
            transduction by p53 class mediator resulting in cell cycle arrest"
            evidence=IEA] [GO:0003730 "mRNA 3'-UTR binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0008285 GO:GO:0006977 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0007050 GO:GO:0003730 GO:GO:0043484 GO:GO:0006978
            GO:GO:0070935 GO:GO:0010830 GeneTree:ENSGT00390000002308 CTD:55544
            OMA:VGYGYPA EMBL:DAAA02036351 IPI:IPI00696591 RefSeq:NP_001192952.1
            UniGene:Bt.106613 ProteinModelPortal:E1BLB7
            Ensembl:ENSBTAT00000010660 GeneID:533516 KEGG:bta:533516
            NextBio:20876057 Uniprot:E1BLB7
        Length = 239

 Score = 136 (52.9 bits), Expect = 4.1e-07, P = 4.1e-07
 Identities = 26/65 (40%), Positives = 41/65 (63%)

Query:   187 KLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKE 246
             K+FV GL ++T++ +LR  FEGFG++ E  +I D+ + +S+GY F+      AA  A K+
Sbjct:    35 KIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKD 94

Query:   247 MNGKI 251
              N  I
Sbjct:    95 PNPNI 99


>UNIPROTKB|A5GFN8 [details] [associations]
            symbol:RNPC1 "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0070935 "3'-UTR-mediated mRNA stabilization"
            evidence=IEA] [GO:0043484 "regulation of RNA splicing"
            evidence=IEA] [GO:0010830 "regulation of myotube differentiation"
            evidence=IEA] [GO:0008285 "negative regulation of cell
            proliferation" evidence=IEA] [GO:0007050 "cell cycle arrest"
            evidence=IEA] [GO:0006978 "DNA damage response, signal transduction
            by p53 class mediator resulting in transcription of p21 class
            mediator" evidence=IEA] [GO:0006977 "DNA damage response, signal
            transduction by p53 class mediator resulting in cell cycle arrest"
            evidence=IEA] [GO:0003730 "mRNA 3'-UTR binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0008285 GO:GO:0006977 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0007050 GO:GO:0003730 GO:GO:0043484 GO:GO:0006978
            HOGENOM:HOG000276232 GO:GO:0070935 GO:GO:0010830 EMBL:CR956362
            HOVERGEN:HBG108399 GeneTree:ENSGT00390000002308 OrthoDB:EOG4DV5NS
            CTD:55544 OMA:VGYGYPA UniGene:Ssc.29738 RefSeq:NP_001098782.1
            SMR:A5GFN8 STRING:A5GFN8 Ensembl:ENSSSCT00000008216
            GeneID:100125973 KEGG:ssc:100125973 Uniprot:A5GFN8
        Length = 239

 Score = 136 (52.9 bits), Expect = 4.1e-07, P = 4.1e-07
 Identities = 26/65 (40%), Positives = 41/65 (63%)

Query:   187 KLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKE 246
             K+FV GL ++T++ +LR  FEGFG++ E  +I D+ + +S+GY F+      AA  A K+
Sbjct:    35 KIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKD 94

Query:   247 MNGKI 251
              N  I
Sbjct:    95 PNPNI 99


>TAIR|locus:2017779 [details] [associations]
            symbol:AT1G22910 species:3702 "Arabidopsis thaliana"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
            acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
            [GO:0005575 "cellular_component" evidence=ND] [GO:0008150
            "biological_process" evidence=ND] [GO:0000398 "mRNA splicing, via
            spliceosome" evidence=RCA] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:CP002684
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00523114
            RefSeq:NP_973889.1 UniGene:At.26231 ProteinModelPortal:F4I321
            SMR:F4I321 EnsemblPlants:AT1G22910.3 GeneID:838898
            KEGG:ath:AT1G22910 ArrayExpress:F4I321 Uniprot:F4I321
        Length = 347

 Score = 140 (54.3 bits), Expect = 4.3e-07, P = 4.3e-07
 Identities = 29/68 (42%), Positives = 45/68 (66%)

Query:   187 KLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKE 246
             K+FV GL++ T ++T++  FE FGE++E  +I DK S RSKGY F+ +   EAA +A  +
Sbjct:    14 KVFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEAARSACVD 73

Query:   247 MNGKIING 254
                 +I+G
Sbjct:    74 AT-PVIDG 80


>ZFIN|ZDB-GENE-050706-77 [details] [associations]
            symbol:snrnp35 "small nuclear ribonucleoprotein 35
            (U11/U12)" species:7955 "Danio rerio" [GO:0000166 "nucleotide
            binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0008150 "biological_process" evidence=ND]
            [GO:0005634 "nucleus" evidence=IEA] [GO:0003723 "RNA binding"
            evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-050706-77 GO:GO:0005634
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
            HSSP:Q14103 GeneTree:ENSGT00530000063750 CTD:11066
            HOGENOM:HOG000006374 HOVERGEN:HBG104583 KO:K13155 OMA:QHEVFVD
            OrthoDB:EOG4MSD0C EMBL:BC098619 IPI:IPI00616423
            RefSeq:NP_001025412.1 UniGene:Dr.47462 ProteinModelPortal:Q4KMD3
            Ensembl:ENSDART00000065243 GeneID:569999 KEGG:dre:569999
            InParanoid:Q4KMD3 NextBio:20889939 Bgee:Q4KMD3 Uniprot:Q4KMD3
        Length = 208

 Score = 133 (51.9 bits), Expect = 4.5e-07, P = 4.5e-07
 Identities = 32/89 (35%), Positives = 53/89 (59%)

Query:   188 LFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEM 247
             LFV  L+  T+E+ LR  F  FG++  ++++ D ++  SK YAFIEY  E +   A ++ 
Sbjct:    52 LFVARLNPQTTEEKLRDVFSKFGDIRRLRLVRDVVTGFSKRYAFIEYKEERSLKRAWRDA 111

Query:   248 NGKIINGWMIVVDVA--KTTPKYSRGRPR 274
             N  I++ + ++VDV   +T P +   RPR
Sbjct:   112 NKLILDQYELLVDVEQERTLPGW---RPR 137


>ZFIN|ZDB-GENE-030131-5923 [details] [associations]
            symbol:rbm38 "RNA binding motif protein 38"
            species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 ZFIN:ZDB-GENE-030131-5923 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 HOGENOM:HOG000276232 HSSP:Q61474
            HOVERGEN:HBG108399 EMBL:AB097829 IPI:IPI00861911 UniGene:Dr.80564
            ProteinModelPortal:Q7T2V9 SMR:Q7T2V9 STRING:Q7T2V9
            InParanoid:Q7T2V9 Uniprot:Q7T2V9
        Length = 246

 Score = 136 (52.9 bits), Expect = 4.7e-07, P = 4.7e-07
 Identities = 34/99 (34%), Positives = 56/99 (56%)

Query:   164 NNLQNSMVPSDSSEASPTQIKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKIS 223
             N    +M PS   + + T     K+FV GL ++T++ +LR  FE FG++ E  +I D+ +
Sbjct:     8 NGTLETMYPSIQKDTTFT-----KIFVGGLPYHTTDASLRKYFETFGDIDEAVVITDRQT 62

Query:   224 KRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVDVA 262
              +S+GY F+    + AA  A K+ N  II+G    V++A
Sbjct:    63 GKSRGYGFVTMMDKSAAERACKDPN-PIIDGRKANVNLA 100


>TAIR|locus:2164082 [details] [associations]
            symbol:AT5G53720 species:3702 "Arabidopsis thaliana"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
            acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
            [GO:0005575 "cellular_component" evidence=ND] [GO:0008150
            "biological_process" evidence=ND] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 HOGENOM:HOG000276232 EMBL:AB017066
            HSSP:Q61474 IPI:IPI00526229 RefSeq:NP_200183.1 UniGene:At.55532
            ProteinModelPortal:Q9FI04 SMR:Q9FI04 EnsemblPlants:AT5G53720.1
            GeneID:835453 KEGG:ath:AT5G53720 TAIR:At5g53720 eggNOG:NOG297705
            InParanoid:Q9FI04 OMA:ATRACEN PhylomeDB:Q9FI04
            ProtClustDB:CLSN2916326 Genevestigator:Q9FI04 Uniprot:Q9FI04
        Length = 100

 Score = 120 (47.3 bits), Expect = 4.7e-07, P = 4.7e-07
 Identities = 26/72 (36%), Positives = 43/72 (59%)

Query:   180 PTQIKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEA 239
             P   +TK ++V GL + T  + L + FE FGE+V  K++ D  ++RSKG+ F+ +   E+
Sbjct:     4 PNDRETK-IYVAGLPWITRTEGLISYFERFGEIVYAKVVCDGATQRSKGFGFVTFREVES 62

Query:   240 ASAALKEMNGKI 251
             A+ A +  N  I
Sbjct:    63 ATRACENPNHTI 74


>UNIPROTKB|A6QPJ1 [details] [associations]
            symbol:RBM24 "Uncharacterized protein" species:9913 "Bos
            taurus" [GO:0043488 "regulation of mRNA stability" evidence=IEA]
            [GO:0010830 "regulation of myotube differentiation" evidence=IEA]
            [GO:0003730 "mRNA 3'-UTR binding" evidence=IEA] [GO:0000166
            "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003730 GO:GO:0043488
            HOGENOM:HOG000276232 GO:GO:0010830 HOVERGEN:HBG108399 CTD:221662
            GeneTree:ENSGT00390000002308 OMA:LQADRMQ eggNOG:NOG248750
            EMBL:DAAA02055633 EMBL:BC149345 IPI:IPI00711385
            RefSeq:NP_001098455.1 UniGene:Bt.111570 SMR:A6QPJ1
            Ensembl:ENSBTAT00000038477 GeneID:524220 KEGG:bta:524220
            NextBio:20873922 Uniprot:A6QPJ1
        Length = 236

 Score = 135 (52.6 bits), Expect = 5.3e-07, P = 5.3e-07
 Identities = 30/76 (39%), Positives = 47/76 (61%)

Query:   187 KLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKE 246
             K+FV GL ++T++ +LR  FE FGE+ E  +I D+ + +S+GY F+      AA  A K+
Sbjct:    12 KIFVGGLPYHTTDASLRKYFEVFGEIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKD 71

Query:   247 MNGKIINGWMIVVDVA 262
              N  II+G    V++A
Sbjct:    72 PN-PIIDGRKANVNLA 86


>UNIPROTKB|Q9BX46 [details] [associations]
            symbol:RBM24 "RNA-binding protein 24" species:9606 "Homo
            sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0030154
            "cell differentiation" evidence=IEA] [GO:0005634 "nucleus"
            evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0043488
            "regulation of mRNA stability" evidence=ISS] [GO:0010830
            "regulation of myotube differentiation" evidence=ISS] [GO:0003730
            "mRNA 3'-UTR binding" evidence=ISS] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0005634 GO:GO:0005737 GO:GO:0030154 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003730 GO:GO:0043488 eggNOG:COG0724
            HOGENOM:HOG000276232 GO:GO:0010830 HSSP:Q9H0Z9 HOVERGEN:HBG108399
            CTD:221662 EMBL:AK055391 EMBL:AK095016 EMBL:AY547318 EMBL:AL136305
            EMBL:BC104810 EMBL:BC104808 IPI:IPI00411370 IPI:IPI00827745
            RefSeq:NP_001137413.1 RefSeq:NP_001137414.1 RefSeq:NP_694565.1
            UniGene:Hs.741190 ProteinModelPortal:Q9BX46 SMR:Q9BX46
            IntAct:Q9BX46 MINT:MINT-2879164 STRING:Q9BX46 PhosphoSite:Q9BX46
            DMDM:74761312 PRIDE:Q9BX46 Ensembl:ENST00000318204
            Ensembl:ENST00000379052 GeneID:221662 KEGG:hsa:221662
            UCSC:uc003nbz.4 UCSC:uc003nca.3 GeneCards:GC06P017281
            HGNC:HGNC:21539 neXtProt:NX_Q9BX46 PharmGKB:PA134964569
            InParanoid:Q9BX46 OMA:LQADRMQ OrthoDB:EOG4DV5NS PhylomeDB:Q9BX46
            GenomeRNAi:221662 NextBio:91409 ArrayExpress:Q9BX46 Bgee:Q9BX46
            CleanEx:HS_RBM24 Genevestigator:Q9BX46 Uniprot:Q9BX46
        Length = 236

 Score = 135 (52.6 bits), Expect = 5.3e-07, P = 5.3e-07
 Identities = 30/76 (39%), Positives = 47/76 (61%)

Query:   187 KLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKE 246
             K+FV GL ++T++ +LR  FE FGE+ E  +I D+ + +S+GY F+      AA  A K+
Sbjct:    12 KIFVGGLPYHTTDASLRKYFEVFGEIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKD 71

Query:   247 MNGKIINGWMIVVDVA 262
              N  II+G    V++A
Sbjct:    72 PN-PIIDGRKANVNLA 86


>TAIR|locus:2030200 [details] [associations]
            symbol:AT1G72530 "AT1G72530" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005739
            "mitochondrion" evidence=ISM] [GO:0008150 "biological_process"
            evidence=ND] EMBL:CP002684 IPI:IPI00938919 RefSeq:NP_001154468.1
            UniGene:At.50962 EnsemblPlants:AT1G72530.2 GeneID:843585
            KEGG:ath:AT1G72530 OMA:YDEKYHA ArrayExpress:F4IDD2 Uniprot:F4IDD2
        Length = 192

 Score = 130 (50.8 bits), Expect = 5.4e-07, P = 5.4e-07
 Identities = 32/104 (30%), Positives = 49/104 (47%)

Query:    59 WNSQIGTTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIYH 118
             W+  I    L      KHWLV M KP  G  T+  +V  + + L   LG+E++A+  IY 
Sbjct:    39 WSELIRVPSLVEGCDYKHWLVLM-KPPNGYPTRNHIVQSFVETLAMALGSEEEAKRSIYS 97

Query:   119 VSWQSNFGFCCELDDECAQELTGVPGVLSVQPDENFGSENKDYG 162
             VS +  + F C + +    ++  +P V  V PD      +  YG
Sbjct:    98 VSTKYYYAFGCRIHEPLTYKIRSLPDVKWVLPDSFIVDGDNRYG 141


>DICTYBASE|DDB_G0291836 [details] [associations]
            symbol:DDB_G0291836 "Squamous cell carcinoma antigen
            recognized by T-cells 3" species:44689 "Dictyostelium discoideum"
            [GO:0006396 "RNA processing" evidence=IEA] [GO:0005622
            "intracellular" evidence=IEA] [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR003107 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 SMART:SM00386
            dictyBase:DDB_G0291836 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003676 GO:GO:0005622 GO:GO:0006396 EMBL:AAFI02000185
            eggNOG:COG5107 OMA:SQAVMKM RefSeq:XP_629950.1
            ProteinModelPortal:Q54E37 EnsemblProtists:DDB0191602 GeneID:8628356
            KEGG:ddi:DDB_G0291836 InParanoid:Q54E37 Uniprot:Q54E37
        Length = 949

 Score = 145 (56.1 bits), Expect = 5.5e-07, P = 5.5e-07
 Identities = 38/110 (34%), Positives = 61/110 (55%)

Query:   156 SEN-KDYGGNN-LQNSMVPSDSSEASPTQIKTKKLFVTGLSFYTSEKTLRAAFEGFGELV 213
             +EN K+ G  +  +  + P+   E    +   KKL +  LSF T+E  L   F+ +G++ 
Sbjct:   681 NENHKEKGDQDEFKKPLPPTSKKEKEKEKDLPKKLIILNLSFDTAEPDLHKIFDKYGQIK 740

Query:   214 EVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVDVAK 263
              +K+++DK  K SKG  FI Y + E+A+ AL EM+ +II    I V  +K
Sbjct:   741 SLKLVLDKNGK-SKGICFILYKSHESANKAL-EMDQQIIKNRTICVQYSK 788


>UNIPROTKB|Q5ZJX4 [details] [associations]
            symbol:RBM38 "RNA-binding protein 38" species:9031 "Gallus
            gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
            "RNA binding" evidence=IEA] [GO:0006397 "mRNA processing"
            evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0030154
            "cell differentiation" evidence=IEA] [GO:0005634 "nucleus"
            evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0005829 GO:GO:0005634 GO:GO:0030154
            GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
            GO:GO:0003723 HOGENOM:HOG000276232 HSSP:Q9H0Z9 HOVERGEN:HBG108399
            OrthoDB:EOG4DV5NS eggNOG:NOG248750 EMBL:AJ720310 IPI:IPI00586902
            UniGene:Gga.5690 ProteinModelPortal:Q5ZJX4 SMR:Q5ZJX4
            InParanoid:Q5ZJX4 Uniprot:Q5ZJX4
        Length = 215

 Score = 133 (51.9 bits), Expect = 5.6e-07, P = 5.6e-07
 Identities = 29/76 (38%), Positives = 47/76 (61%)

Query:   187 KLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKE 246
             K+FV GL ++T++ +LR  FE FG++ E  +I D+ + +S+GY F+      AA  A K+
Sbjct:    12 KIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKD 71

Query:   247 MNGKIINGWMIVVDVA 262
              N  II+G    V++A
Sbjct:    72 PN-PIIDGRKANVNLA 86


>UNIPROTKB|B5G279 [details] [associations]
            symbol:NCBP2 "Nuclear cap-binding protein subunit 2"
            species:59729 "Taeniopygia guttata" [GO:0000340 "RNA
            7-methylguanosine cap binding" evidence=ISS] [GO:0045292 "mRNA cis
            splicing, via spliceosome" evidence=ISS] InterPro:IPR000504
            InterPro:IPR012677 InterPro:IPR027157 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0006417
            GO:GO:0000184 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0031047
            GO:GO:0000340 GO:GO:0051028 eggNOG:COG0724 GO:GO:0006370
            GO:GO:0045292 HOGENOM:HOG000217589 OrthoDB:EOG470TJG
            PANTHER:PTHR18847 KO:K12883 EMBL:DQ215986 RefSeq:NP_001232044.1
            UniGene:Tgu.10927 ProteinModelPortal:B5G279 STRING:B5G279
            GeneID:100190722 KEGG:tgu:100190722 Uniprot:B5G279
        Length = 168

 Score = 122 (48.0 bits), Expect = 5.6e-07, P = 5.6e-07
 Identities = 29/88 (32%), Positives = 49/88 (55%)

Query:   188 LFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEM 247
             L+V  LSFYT+E+ ++  F   G++  + + +DKI K   G+ F+EY T   A  A++ +
Sbjct:    45 LYVGNLSFYTTEEQIQELFSKCGDVKRIVMGLDKIKKTPCGFCFVEYYTRADAEHAMRFI 104

Query:   248 NGKIINGWMIVVDVA---KTTPKYSRGR 272
             NG  ++  +I  D     K   +Y RG+
Sbjct:   105 NGTRLDDRIIRTDWDAGFKEGRQYGRGK 132

WARNING:  HSPs involving 770 database sequences were not reported due to the
          limiting value of parameter B = 250.


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.317   0.133   0.403    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      274       274   0.00078  115 3  11 22  0.37    34
                                                     33  0.40    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1020
  No. of states in DFA:  607 (65 KB)
  Total size of DFA:  218 KB (2121 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  22.68u 0.12s 22.80t   Elapsed:  00:00:02
  Total cpu time:  22.69u 0.12s 22.81t   Elapsed:  00:00:02
  Start:  Sat May 11 06:55:37 2013   End:  Sat May 11 06:55:39 2013
WARNINGS ISSUED:  2
the Gene Ontology

BLAST Results

Query Summary

Query Sequence

High Scoring Gene Products

Raw Blast Data


Symbol, full name	Information	P value
BLAST match view associations BLAST with ORRM1 ORRM1 ORRM1 AT3G20930	protein from Arabidopsis thaliana	3.7e-96
BLAST match view associations BLAST with AT1G73530 AT1G73530 AT1G73530	protein from Arabidopsis thaliana	4.3e-22
BLAST match view associations BLAST with AT1G32580 AT1G32580 AT1G32580	protein from Arabidopsis thaliana	5.5e-22
BLAST match view associations BLAST with DAL1 DAL1 DAL1 differentiation and greening-like 1	protein from Arabidopsis thaliana	1.5e-21
BLAST match view associations BLAST with MORF6 MORF6 MORF6 multiple organellar RNA editing factor 6	protein from Arabidopsis thaliana	4.4e-20
BLAST match view associations BLAST with AT4G20030 AT4G20030 AT4G20030	protein from Arabidopsis thaliana	3.7e-16
BLAST match view associations BLAST with AT5G06210 AT5G06210 AT5G06210	protein from Arabidopsis thaliana	3.7e-16
BLAST match view associations BLAST with MORF9 MORF9 MORF9 multiple organellar RNA editing factor 9	protein from Arabidopsis thaliana	6.0e-16
BLAST match view associations BLAST with AT2G37510 AT2G37510 AT2G37510	protein from Arabidopsis thaliana	1.6e-15
BLAST match view associations BLAST with GR-RBP2 GR-RBP2 GR-RBP2 AT4G13850	protein from Arabidopsis thaliana	3.3e-15
BLAST match view associations BLAST with RPS19 RPS19 RPS19 AT5G47320	protein from Arabidopsis thaliana	1.1e-14
BLAST match view associations BLAST with GRP4 GRP4 GRP4 AT3G23830	protein from Arabidopsis thaliana	3.0e-14
BLAST match view associations BLAST with AT3G46020 AT3G46020 AT3G46020	protein from Arabidopsis thaliana	4.9e-14
BLAST match view associations BLAST with AT2G27330 AT2G27330 AT2G27330	protein from Arabidopsis thaliana	6.2e-14
BLAST match view associations BLAST with AT5G54580 AT5G54580 AT5G54580	protein from Arabidopsis thaliana	1.0e-13
BLAST match view associations BLAST with F6RBQ9 F6RBQ9 F6RBQ9 Uncharacterized protein	protein from Bos taurus	1.3e-13
BLAST match view associations BLAST with Rbm3 Rbm3 Rbm3 RNA binding motif protein 3	protein from Mus musculus	1.7e-13
BLAST match view associations BLAST with RBM3 RBM3 RBM3 Putative RNA-binding protein 3	protein from Homo sapiens	2.3e-13
BLAST match view associations BLAST with RBM3 RBM3 RBM3 Uncharacterized protein	protein from Sus scrofa	4.0e-13
BLAST match view associations BLAST with RBM3 RBM3 RBM3 Uncharacterized protein	protein from Canis lupus familiaris	5.3e-13
BLAST match view associations BLAST with cirbp cirbp cirbp Cold-inducible RNA-binding protein	protein from Xenopus (Silurana) tropicalis	5.3e-13
BLAST match view associations BLAST with Rbm3 Rbm3 Rbm3 RNA binding motif (RNP1, RRM) protein 3	gene from Rattus norvegicus	1.2e-12
BLAST match view associations BLAST with RBM3 RBM3 RBM3 Uncharacterized protein	protein from Canis lupus familiaris	1.6e-12
BLAST match view associations BLAST with CIRBP CIRBP CIRBP Uncharacterized protein	protein from Bos taurus	2.1e-12
BLAST match view associations BLAST with CIRBP CIRBP CIRBP Uncharacterized protein	protein from Canis lupus familiaris	2.1e-12
BLAST match view associations BLAST with CIRBP CIRBP CIRBP Uncharacterized protein	protein from Canis lupus familiaris	2.1e-12
BLAST match view associations BLAST with CIRBP CIRBP CIRBP Cold-inducible RNA-binding protein	protein from Homo sapiens	2.1e-12
BLAST match view associations BLAST with CIRBP CIRBP CIRBP Cold-inducible RNA-binding protein	protein from Homo sapiens	2.1e-12
BLAST match view associations BLAST with CIRBP CIRBP CIRBP Cold-inducible RNA-binding protein	protein from Homo sapiens	2.1e-12
BLAST match view associations BLAST with CIRBP CIRBP CIRBP Cold-inducible RNA-binding protein	protein from Homo sapiens	2.1e-12
BLAST match view associations BLAST with CIRBP CIRBP CIRBP Cold-inducible RNA-binding protein	protein from Homo sapiens	2.1e-12
BLAST match view associations BLAST with CIRBP CIRBP CIRBP Cold-inducible RNA-binding protein	protein from Homo sapiens	2.1e-12
BLAST match view associations BLAST with CIRBP CIRBP CIRBP Uncharacterized protein	protein from Sus scrofa	2.1e-12
BLAST match view associations BLAST with CIRBP CIRBP CIRBP Cold-inducible RNA-binding protein	protein from Pongo abelii	2.1e-12
BLAST match view associations BLAST with CIRBP CIRBP CIRBP Cold-inducible RNA-binding protein	protein from Cricetulus griseus	2.7e-12
BLAST match view associations BLAST with Cirbp Cirbp Cirbp cold inducible RNA binding protein	protein from Mus musculus	2.7e-12
BLAST match view associations BLAST with Cirbp Cirbp Cirbp cold inducible RNA binding protein	gene from Rattus norvegicus	2.7e-12
BLAST match view associations BLAST with cirbp cirbp cirbp Cold-inducible RNA-binding protein	protein from Rana catesbeiana	3.6e-12
BLAST match view associations BLAST with cirbp-b cirbp-b cirbp-b Cold-inducible RNA-binding protein B	protein from Xenopus laevis	8.1e-12
BLAST match view associations BLAST with CIRBP CIRBP CIRBP Uncharacterized protein	protein from Gallus gallus	1.1e-11
BLAST match view associations BLAST with CIRBP CIRBP CIRBP Uncharacterized protein	protein from Gallus gallus	1.1e-11
BLAST match view associations BLAST with CIRBP CIRBP CIRBP Uncharacterized protein	protein from Gallus gallus	1.1e-11
BLAST match view associations BLAST with I3LQ36 I3LQ36 I3LQ36 Uncharacterized protein	protein from Sus scrofa	1.1e-11
BLAST match view associations BLAST with ATRZ-1A ATRZ-1A ATRZ-1A AT3G26420	protein from Arabidopsis thaliana	1.3e-11
BLAST match view associations BLAST with cirbp-a cirbp-a cirbp-a Cold-inducible RNA-binding protein A	protein from Xenopus laevis	1.8e-11
BLAST match view associations BLAST with CCR1 CCR1 CCR1 AT4G39260	protein from Arabidopsis thaliana	3.1e-11
BLAST match view associations BLAST with RBMX RBMX RBMX Uncharacterized protein	protein from Sus scrofa	4.0e-11
BLAST match view associations BLAST with CIRBP CIRBP CIRBP Cold-inducible RNA-binding protein	protein from Homo sapiens	5.2e-11
BLAST match view associations BLAST with cirbp cirbp cirbp cold inducible RNA binding protein	gene_product from Danio rerio	5.3e-11
BLAST match view associations BLAST with AT3G08000 AT3G08000 AT3G08000	protein from Arabidopsis thaliana	6.9e-11
BLAST match view associations BLAST with RBMXL1 RBMXL1 RBMXL1 RNA binding motif protein, X-linked-like-1	protein from Homo sapiens	1.1e-10
BLAST match view associations BLAST with GR-RBP3 GR-RBP3 GR-RBP3 AT5G61030	protein from Arabidopsis thaliana	1.3e-10
BLAST match view associations BLAST with CIRBP CIRBP CIRBP Cold-inducible RNA-binding protein	protein from Homo sapiens	1.5e-10
BLAST match view associations BLAST with AT5G19030 AT5G19030 AT5G19030	protein from Arabidopsis thaliana	1.5e-10
BLAST match view associations BLAST with RBMX RBMX RBMX RNA-binding motif protein, X chromosome, N-terminally processed	protein from Homo sapiens	1.8e-10
BLAST match view associations BLAST with RBMX RBMX RBMX RNA-binding motif protein, X chromosome, N-terminally processed	protein from Homo sapiens	1.9e-10
BLAST match view associations BLAST with HNRNPA1 HNRNPA1 HNRNPA1 Heterogeneous nuclear ribonucleoprotein A1	protein from Homo sapiens	2.0e-10
BLAST match view associations BLAST with CBU_1183 CBU_1183 CBU_1183 Glycine-rich RNA-binding protein	protein from Coxiella burnetii RSA 493	2.0e-10
BLAST match view associations BLAST with CBU_1183 CBU_1183 CBU_1183 nucleic acid binding domain protein	protein from Coxiella burnetii RSA 493	2.0e-10
BLAST match view associations BLAST with AT5G59860 AT5G59860 AT5G59860	protein from Arabidopsis thaliana	2.0e-10
BLAST match view associations BLAST with RBMX RBMX RBMX Uncharacterized protein	protein from Sus scrofa	2.2e-10
BLAST match view associations BLAST with Os11g0216400 Os11g0216400 Os11g0216400 Os11g0216400 protein	protein from Oryza sativa Japonica Group	4.0e-10
BLAST match view associations BLAST with zgc:112425 zgc:112425 zgc:112425	gene_product from Danio rerio	4.3e-10
BLAST match view associations BLAST with RBMX RBMX RBMX Uncharacterized protein	protein from Sus scrofa	4.5e-10
BLAST match view associations BLAST with Rbmx Rbmx Rbmx RNA binding motif protein, X-linked	gene from Rattus norvegicus	4.5e-10
BLAST match view associations BLAST with RBMX RBMX RBMX Rbmx	protein from Bos taurus	4.5e-10
BLAST match view associations BLAST with RBMX RBMX RBMX RNA-binding motif protein, X chromosome	protein from Homo sapiens	4.5e-10
BLAST match view associations BLAST with RBMX RBMX RBMX RNA-binding motif protein, X chromosome	protein from Pan troglodytes	4.5e-10
BLAST match view associations BLAST with RBMX RBMX RBMX RNA-binding motif protein, X chromosome	protein from Macaca fascicularis	4.5e-10
BLAST match view associations BLAST with Rbmx Rbmx Rbmx RNA binding motif protein, X chromosome	protein from Mus musculus	4.5e-10
BLAST match view associations BLAST with RBMX RBMX RBMX Uncharacterized protein	protein from Canis lupus familiaris	4.5e-10
BLAST match view associations BLAST with RBMX RBMX RBMX RNA-binding motif protein, X chromosome	protein from Bos taurus	4.6e-10
BLAST match view associations BLAST with GR-RBP5 GR-RBP5 GR-RBP5 AT1G74230	protein from Arabidopsis thaliana	5.6e-10
BLAST match view associations BLAST with blt801 blt801 blt801 Glycine-rich RNA-binding protein blt801	protein from Hordeum vulgare	5.7e-10
BLAST match view associations BLAST with Rbmxl1 Rbmxl1 Rbmxl1 RNA binding motif protein, X linked-like-1	protein from Mus musculus	5.9e-10
BLAST match view associations BLAST with HNRNPA1 HNRNPA1 HNRNPA1 Heterogeneous nuclear ribonucleoprotein A1	protein from Homo sapiens	1.2e-09
BLAST match view associations BLAST with GRP7 GRP7 GRP7 AT2G21660	protein from Arabidopsis thaliana	1.2e-09
BLAST match view associations BLAST with U1-70K U1-70K U1-70K AT3G50670	protein from Arabidopsis thaliana	1.3e-09
BLAST match view associations BLAST with rbmx rbmx rbmx RNA binding motif protein, X-linked	gene_product from Danio rerio	1.3e-09
BLAST match view associations BLAST with RBMX RBMX RBMX Uncharacterized protein	protein from Gallus gallus	1.3e-09
BLAST match view associations BLAST with CIRBP CIRBP CIRBP cDNA FLJ52850, moderately similar to Cold-inducible RNA-binding protein	protein from Homo sapiens	1.6e-09
BLAST match view associations BLAST with CIRBP CIRBP CIRBP Cold-inducible RNA-binding protein	protein from Homo sapiens	1.6e-09
BLAST match view associations BLAST with LOC100514264 LOC100514264 LOC100514264 Uncharacterized protein	protein from Sus scrofa	1.6e-09
BLAST match view associations BLAST with AT2G46780 AT2G46780 AT2G46780	protein from Arabidopsis thaliana	1.7e-09
BLAST match view associations BLAST with Rbmxrtl Rbmxrtl Rbmxrtl RNA binding motif protein, X chromosome retrogene-like	gene from Rattus norvegicus	1.8e-09
BLAST match view associations BLAST with Rbmxl1 Rbmxl1 Rbmxl1 RNA binding motif protein, X-linked-like 1	gene from Rattus norvegicus	1.8e-09
BLAST match view associations BLAST with UBA1A UBA1A UBA1A AT2G22090	protein from Arabidopsis thaliana	1.8e-09
BLAST match view associations BLAST with RBMXL2 RBMXL2 RBMXL2 RNA-binding motif protein, X-linked-like-2	protein from Homo sapiens	1.8e-09
BLAST match view associations BLAST with RBM38 RBM38 RBM38 RNA-binding protein 38	protein from Homo sapiens	2.1e-09
BLAST match view associations BLAST with RBMX RBMX RBMX Uncharacterized protein	protein from Sus scrofa	2.7e-09
BLAST match view associations BLAST with RBMX RBMX RBMX RNA-binding motif protein, X chromosome, N-terminally processed	protein from Homo sapiens	3.5e-09
BLAST match view associations BLAST with CIRBP CIRBP CIRBP Cold-inducible RNA-binding protein	protein from Homo sapiens	3.5e-09
BLAST match view associations BLAST with AT4G13860 AT4G13860 AT4G13860	protein from Arabidopsis thaliana	3.5e-09
BLAST match view associations BLAST with rbm8a rbm8a rbm8a RNA binding motif protein 8A	gene_product from Danio rerio	3.5e-09
BLAST match view associations BLAST with rbmx rbmx rbmx RNA-binding motif protein, X chromosome	protein from Xenopus laevis	3.7e-09
BLAST match view associations BLAST with LOC100135403 LOC100135403 LOC100135403 LOC100135403 protein	protein from Xenopus (Silurana) tropicalis	3.8e-09
BLAST match view associations BLAST with MORF3 MORF3 MORF3 multiple organellar RNA editing factor 3	protein from Arabidopsis thaliana	4.3e-09
BLAST match view associations BLAST with RBMY1D RBMY1D RBMY1D RNA-binding motif protein, Y chromosome, family 1 member D	protein from Homo sapiens	4.4e-09