BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 024012
(274 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9SVM8|RBG2_ARATH Glycine-rich RNA-binding protein 2, mitochondrial OS=Arabidopsis
thaliana GN=RBG2 PE=1 SV=1
Length = 158
Score = 82.4 bits (202), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 42/104 (40%), Positives = 65/104 (62%), Gaps = 1/104 (0%)
Query: 167 QNSMVPSDSSEASPTQIKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRS 226
N VP S S ++ + KLF+ GLS+ T + +LR AF FG++V+ K+I+D+ + RS
Sbjct: 17 SNGNVPVTSMLGS-LRLMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRS 75
Query: 227 KGYAFIEYTTEEAASAALKEMNGKIINGWMIVVDVAKTTPKYSR 270
+G+ F+ + E AA+AA+ EM+GK +NG I V+ A P R
Sbjct: 76 RGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPANDRPSAPR 119
>sp|Q38732|DAG_ANTMA DAG protein, chloroplastic OS=Antirrhinum majus GN=DAG PE=2 SV=1
Length = 230
Score = 80.9 bits (198), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 42/123 (34%), Positives = 66/123 (53%), Gaps = 1/123 (0%)
Query: 66 TLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIYHVSWQSNF 125
T++ P HWL+ M+ P T+ QM+D Y L VLG+ ++A+ +Y S +
Sbjct: 78 TIMLPGCDYNHWLIVMEFPKDPAPTREQMIDTYLNTLATVLGSMEEAKKNMYAFSTTTYT 137
Query: 126 GFCCELDDECAQELTGVPGVLSVQPDENFGSENKDYGGNNLQN-SMVPSDSSEASPTQIK 184
GF C + +E +++ G+PGVL V PD +NKDYGG+ N ++P P Q +
Sbjct: 138 GFQCTVTEETSEKFKGLPGVLWVLPDSYIDVKNKDYGGDKYVNGEIIPCQYPTYQPKQSR 197
Query: 185 TKK 187
+ K
Sbjct: 198 SSK 200
Score = 40.8 bits (94), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 22/46 (47%), Positives = 26/46 (56%)
Query: 3 IYDASCDTHFGFCCNVDEETSRELARLPGVLTVRPDPDYNSVKKDY 48
+Y S T+ GF C V EETS + LPGVL V PD + KDY
Sbjct: 128 MYAFSTTTYTGFQCTVTEETSEKFKGLPGVLWVLPDSYIDVKNKDY 173
>sp|Q9LIS2|RBG4_ARATH Glycine-rich RNA-binding protein 4, mitochondrial OS=Arabidopsis
thaliana GN=RBG4 PE=2 SV=1
Length = 136
Score = 76.6 bits (187), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 34/78 (43%), Positives = 56/78 (71%)
Query: 185 TKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAAL 244
+ KLFV GLS+ T + +L+ AF FGE+ E +I D+ + RS+G+ F+ ++ E++A+ A+
Sbjct: 34 SSKLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAI 93
Query: 245 KEMNGKIINGWMIVVDVA 262
KEM+GK +NG I V++A
Sbjct: 94 KEMDGKELNGRQIRVNLA 111
>sp|P39697|RT19_ARATH 40S ribosomal protein S19, mitochondrial OS=Arabidopsis thaliana
GN=RPS19 PE=1 SV=2
Length = 212
Score = 75.9 bits (185), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 40/105 (38%), Positives = 66/105 (62%), Gaps = 1/105 (0%)
Query: 162 GGNNLQNSMVPSDSSEASPTQIKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDK 221
GG+ Q VP S S + TK L++ GLS T E +L+ AF F + E +++ +K
Sbjct: 8 GGHWKQGVNVPVSSMLGSLRYMSTK-LYIGGLSPGTDEHSLKDAFSSFNGVTEARVMTNK 66
Query: 222 ISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVDVAKTTP 266
++ RS+GY F+ + +E++A++A+ MNG+ +NG+ I V+VAK P
Sbjct: 67 VTGRSRGYGFVNFISEDSANSAISAMNGQELNGFNISVNVAKDWP 111
>sp|Q925G0|RBM3_RAT Putative RNA-binding protein 3 OS=Rattus norvegicus GN=Rbm3 PE=1
SV=2
Length = 155
Score = 75.1 bits (183), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 35/85 (41%), Positives = 54/85 (63%)
Query: 187 KLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKE 246
KLFV GL+F T E+ L F FG + EV ++ D+ ++RS+G+ FI +T E AS ++
Sbjct: 7 KLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDVMRA 66
Query: 247 MNGKIINGWMIVVDVAKTTPKYSRG 271
MNG+ ++G I VD A + + +RG
Sbjct: 67 MNGESLDGRQIRVDHAGKSARGTRG 91
>sp|P98179|RBM3_HUMAN Putative RNA-binding protein 3 OS=Homo sapiens GN=RBM3 PE=1 SV=1
Length = 157
Score = 74.3 bits (181), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 34/81 (41%), Positives = 52/81 (64%)
Query: 187 KLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKE 246
KLFV GL+F T E+ L F FG + EV ++ D+ ++RS+G+ FI +T E AS A++
Sbjct: 7 KLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASVAMRA 66
Query: 247 MNGKIINGWMIVVDVAKTTPK 267
MNG+ ++G I VD A + +
Sbjct: 67 MNGESLDGRQIRVDHAGKSAR 87
>sp|Q9FNR1|RBG3_ARATH Glycine-rich RNA-binding protein 3, mitochondrial OS=Arabidopsis
thaliana GN=RBG3 PE=2 SV=1
Length = 309
Score = 73.9 bits (180), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 59/80 (73%)
Query: 183 IKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASA 242
+ + KLF+ G+++ E +LR AF +GE+V+ ++I+D+ + RS+G+ F+ +T+ EAAS+
Sbjct: 37 MSSSKLFIGGMAYSMDEDSLREAFTKYGEVVDTRVILDRETGRSRGFGFVTFTSSEAASS 96
Query: 243 ALKEMNGKIINGWMIVVDVA 262
A++ ++G+ ++G ++ V+ A
Sbjct: 97 AIQALDGRDLHGRVVKVNYA 116
>sp|O89086|RBM3_MOUSE Putative RNA-binding protein 3 OS=Mus musculus GN=Rbm3 PE=1 SV=1
Length = 153
Score = 73.6 bits (179), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 34/76 (44%), Positives = 50/76 (65%)
Query: 187 KLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKE 246
KLFV GL+F T E+ L F FG + EV ++ D+ ++RS+G+ FI +T E AS A++
Sbjct: 7 KLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDAMRA 66
Query: 247 MNGKIINGWMIVVDVA 262
MNG+ ++G I VD A
Sbjct: 67 MNGESLDGRQIRVDHA 82
>sp|Q28IQ9|CIRBP_XENTR Cold-inducible RNA-binding protein OS=Xenopus tropicalis GN=cirbp
PE=2 SV=1
Length = 166
Score = 71.6 bits (174), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 33/76 (43%), Positives = 50/76 (65%)
Query: 187 KLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKE 246
KLFV GL+F T+E++L F +G++ EV ++ D+ SKRS+G+ F+ + E A A+
Sbjct: 7 KLFVGGLNFETTEESLEQVFSKYGQVAEVVVVKDRESKRSRGFGFVTFENPEDAKDAMMA 66
Query: 247 MNGKIINGWMIVVDVA 262
MNGK ++G I VD A
Sbjct: 67 MNGKSVDGRQIRVDQA 82
>sp|Q5RF83|CIRBP_PONAB Cold-inducible RNA-binding protein OS=Pongo abelii GN=CIRBP PE=2
SV=1
Length = 172
Score = 70.9 bits (172), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 35/86 (40%), Positives = 56/86 (65%), Gaps = 1/86 (1%)
Query: 187 KLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKE 246
KLFV GLSF T+E++L F +G++ EV ++ D+ ++RS+G+ F+ + + A A+
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 247 MNGKIINGWMIVVDVA-KTTPKYSRG 271
MNGK ++G I VD A K++ SRG
Sbjct: 67 MNGKSVDGRQIRVDQAGKSSDNRSRG 92
>sp|Q14011|CIRBP_HUMAN Cold-inducible RNA-binding protein OS=Homo sapiens GN=CIRBP PE=1
SV=1
Length = 172
Score = 70.9 bits (172), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 35/86 (40%), Positives = 56/86 (65%), Gaps = 1/86 (1%)
Query: 187 KLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKE 246
KLFV GLSF T+E++L F +G++ EV ++ D+ ++RS+G+ F+ + + A A+
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 247 MNGKIINGWMIVVDVA-KTTPKYSRG 271
MNGK ++G I VD A K++ SRG
Sbjct: 67 MNGKSVDGRQIRVDQAGKSSDNRSRG 92
>sp|Q29RT0|RBMX_BOVIN RNA-binding motif protein, X chromosome OS=Bos taurus GN=RBMX PE=2
SV=1
Length = 396
Score = 70.9 bits (172), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 35/89 (39%), Positives = 56/89 (62%), Gaps = 1/89 (1%)
Query: 184 KTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAA 243
+ KLF+ GL+ T EK+L A F +G + EV ++ D+ + +S+G+AFI + + A AA
Sbjct: 6 RPGKLFIGGLNLETDEKSLEATFGKYGRISEVLLMKDRETNKSRGFAFITFESPADAKAA 65
Query: 244 LKEMNGKIINGWMIVVDVAKTTPKYSRGR 272
+++MNGK ++G I V A T P + GR
Sbjct: 66 VRDMNGKSLDGKAIKVAQA-TKPAFESGR 93
>sp|Q9C909|RBG5_ARATH Glycine-rich RNA-binding protein 5, mitochondrial OS=Arabidopsis
thaliana GN=RBG5 PE=2 SV=1
Length = 289
Score = 70.5 bits (171), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 33/80 (41%), Positives = 57/80 (71%), Gaps = 1/80 (1%)
Query: 183 IKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASA 242
+ + K+FV G+S+ T E LR AF +GE+V+ KII+D+ + RS+G+AF+ +T+ E AS
Sbjct: 31 MSSSKIFVGGISYSTDEFGLREAFSKYGEVVDAKIIVDRETGRSRGFAFVTFTSTEEASN 90
Query: 243 ALKEMNGKIINGWMIVVDVA 262
A+ +++G+ ++G I V+ A
Sbjct: 91 AM-QLDGQDLHGRRIRVNYA 109
>sp|Q7ZWA3|RBMX_DANRE RNA-binding motif protein, X chromosome OS=Danio rerio GN=rbmx PE=2
SV=1
Length = 379
Score = 70.5 bits (171), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 35/85 (41%), Positives = 53/85 (62%), Gaps = 1/85 (1%)
Query: 184 KTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAA 243
+ KLF+ GL+ TSEK L A F FG + EV ++ D+ + +S+G+AF+ Y A A
Sbjct: 6 RPGKLFIGGLNTETSEKVLEAYFSKFGRISEVLLMKDRETNKSRGFAFVTYENPGDAKDA 65
Query: 244 LKEMNGKIINGWMIVVDVAKTTPKY 268
+EMNGK ++G I V+ A T P++
Sbjct: 66 AREMNGKPLDGKPIKVEQA-TKPQF 89
>sp|P60825|CIRBP_RAT Cold-inducible RNA-binding protein OS=Rattus norvegicus GN=Cirbp
PE=2 SV=1
Length = 172
Score = 69.7 bits (169), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/86 (40%), Positives = 55/86 (63%), Gaps = 1/86 (1%)
Query: 187 KLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKE 246
KLFV GLSF T+E+ L F +G++ EV ++ D+ ++RS+G+ F+ + + A A+
Sbjct: 7 KLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 247 MNGKIINGWMIVVDVA-KTTPKYSRG 271
MNGK ++G I VD A K++ SRG
Sbjct: 67 MNGKSVDGRQIRVDQAGKSSDNRSRG 92
>sp|P60824|CIRBP_MOUSE Cold-inducible RNA-binding protein OS=Mus musculus GN=Cirbp PE=1
SV=1
Length = 172
Score = 69.7 bits (169), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/86 (40%), Positives = 55/86 (63%), Gaps = 1/86 (1%)
Query: 187 KLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKE 246
KLFV GLSF T+E+ L F +G++ EV ++ D+ ++RS+G+ F+ + + A A+
Sbjct: 7 KLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 247 MNGKIINGWMIVVDVA-KTTPKYSRG 271
MNGK ++G I VD A K++ SRG
Sbjct: 67 MNGKSVDGRQIRVDQAGKSSDNRSRG 92
>sp|P60826|CIRBP_CRIGR Cold-inducible RNA-binding protein OS=Cricetulus griseus GN=CIRBP
PE=2 SV=1
Length = 172
Score = 69.7 bits (169), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/86 (40%), Positives = 55/86 (63%), Gaps = 1/86 (1%)
Query: 187 KLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKE 246
KLFV GLSF T+E+ L F +G++ EV ++ D+ ++RS+G+ F+ + + A A+
Sbjct: 7 KLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 247 MNGKIINGWMIVVDVA-KTTPKYSRG 271
MNGK ++G I VD A K++ SRG
Sbjct: 67 MNGKSVDGRQIRVDQAGKSSDNRSRG 92
>sp|Q42404|RU17_ARATH U1 small nuclear ribonucleoprotein 70 kDa OS=Arabidopsis thaliana
GN=RNU1 PE=1 SV=1
Length = 427
Score = 69.3 bits (168), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 34/91 (37%), Positives = 56/91 (61%), Gaps = 5/91 (5%)
Query: 186 KKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALK 245
K LFV+ L++ +SE ++ FE +G + V ++ D+++ + KGYAFIEY AA K
Sbjct: 138 KTLFVSRLNYESSESKIKREFESYGPIKRVHLVTDQLTNKPKGYAFIEYMHTRDMKAAYK 197
Query: 246 EMNGKIINGWMIVVDV--AKTTPKYSRGRPR 274
+ +G+ I+G ++VDV +T P + RPR
Sbjct: 198 QADGQKIDGRRVLVDVERGRTVPNW---RPR 225
>sp|Q4V898|RBMX_RAT RNA-binding motif protein, X chromosome OS=Rattus norvegicus
GN=Rbmx PE=1 SV=1
Length = 390
Score = 69.3 bits (168), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 34/89 (38%), Positives = 56/89 (62%), Gaps = 1/89 (1%)
Query: 184 KTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAA 243
+ KLF+ GL+ T+EK L A F +G +VEV ++ D+ + +S+G+AF+ + + A A
Sbjct: 6 RPGKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDA 65
Query: 244 LKEMNGKIINGWMIVVDVAKTTPKYSRGR 272
++MNGK ++G I V+ A T P + GR
Sbjct: 66 ARDMNGKSLDGKAIKVEQA-TKPSFESGR 93
>sp|Q9WV02|RBMX_MOUSE RNA-binding motif protein, X chromosome OS=Mus musculus GN=Rbmx
PE=1 SV=1
Length = 391
Score = 69.3 bits (168), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 34/89 (38%), Positives = 56/89 (62%), Gaps = 1/89 (1%)
Query: 184 KTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAA 243
+ KLF+ GL+ T+EK L A F +G +VEV ++ D+ + +S+G+AF+ + + A A
Sbjct: 6 RPGKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDA 65
Query: 244 LKEMNGKIINGWMIVVDVAKTTPKYSRGR 272
++MNGK ++G I V+ A T P + GR
Sbjct: 66 ARDMNGKSLDGKAIKVEQA-TKPSFESGR 93
>sp|Q9PTX2|CIRBP_LITCT Cold-inducible RNA-binding protein OS=Lithobates catesbeiana
GN=cirbp PE=2 SV=1
Length = 164
Score = 68.9 bits (167), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 33/76 (43%), Positives = 48/76 (63%)
Query: 187 KLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKE 246
KLFV GLSF T E+ L F +G++ EV ++ D+ +KRS+G+ F+ + E A A+
Sbjct: 7 KLFVGGLSFDTDEQCLETVFSKYGQIQEVVVVKDRETKRSRGFGFVTFENCEDAKDAMAG 66
Query: 247 MNGKIINGWMIVVDVA 262
MNGK ++G I VD A
Sbjct: 67 MNGKTVDGRQIRVDQA 82
>sp|Q9DED4|CIRBB_XENLA Cold-inducible RNA-binding protein B OS=Xenopus laevis GN=cirbp-b
PE=1 SV=1
Length = 166
Score = 68.2 bits (165), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 50/76 (65%)
Query: 187 KLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKE 246
KLF+ GL+F T+E++L F +G++ EV ++ D+ +KRS+G+ F+ + + A A+
Sbjct: 6 KLFIGGLNFDTNEESLEQVFSKYGQISEVVVVKDRETKRSRGFGFVTFENPDDAKDAMMA 65
Query: 247 MNGKIINGWMIVVDVA 262
MNGK ++G I VD A
Sbjct: 66 MNGKAVDGRQIRVDQA 81
>sp|Q4R813|RMXL2_MACFA RNA-binding motif protein, X-linked-like-2 OS=Macaca fascicularis
GN=RBMXL2 PE=2 SV=1
Length = 394
Score = 67.8 bits (164), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 33/85 (38%), Positives = 53/85 (62%), Gaps = 1/85 (1%)
Query: 184 KTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAA 243
+ KLF+ GL+ T EK L A F +G +VEV ++ D+ + +S+G+AF+ + + A AA
Sbjct: 6 RPGKLFIGGLNLETDEKALEAEFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPANAKAA 65
Query: 244 LKEMNGKIINGWMIVVDVAKTTPKY 268
++MNGK ++G I V A T P +
Sbjct: 66 ARDMNGKSLDGKAIKVAQA-TKPAF 89
>sp|O75526|RMXL2_HUMAN RNA-binding motif protein, X-linked-like-2 OS=Homo sapiens
GN=RBMXL2 PE=1 SV=3
Length = 392
Score = 67.4 bits (163), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 33/85 (38%), Positives = 53/85 (62%), Gaps = 1/85 (1%)
Query: 184 KTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAA 243
+ KLF+ GL+ T EK L A F +G +VEV ++ D+ + +S+G+AF+ + + A AA
Sbjct: 6 RPGKLFIGGLNLETDEKALEAEFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKAA 65
Query: 244 LKEMNGKIINGWMIVVDVAKTTPKY 268
++MNGK ++G I V A T P +
Sbjct: 66 ARDMNGKSLDGKAIKVAQA-TKPAF 89
>sp|P17133|RU17_DROME U1 small nuclear ribonucleoprotein 70 kDa OS=Drosophila
melanogaster GN=snRNP-U1-70K PE=1 SV=2
Length = 448
Score = 67.4 bits (163), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 35/91 (38%), Positives = 53/91 (58%), Gaps = 6/91 (6%)
Query: 180 PTQIKT------KKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIE 233
PT+IK + LF+ +++ TSE LR FE +G + ++ +I D+ S + KGYAFIE
Sbjct: 90 PTEIKNATEDPFRTLFIARINYDTSESKLRREFEFYGPIKKIVLIHDQESGKPKGYAFIE 149
Query: 234 YTTEEAASAALKEMNGKIINGWMIVVDVAKT 264
Y E AA K +GK I+ ++VDV +
Sbjct: 150 YEHERDMHAAYKHADGKKIDSKRVLVDVERA 180
>sp|A6NEQ0|RBY1E_HUMAN RNA-binding motif protein, Y chromosome, family 1 member E OS=Homo
sapiens GN=RBMY1E PE=2 SV=1
Length = 496
Score = 66.6 bits (161), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 39/88 (44%), Positives = 53/88 (60%), Gaps = 1/88 (1%)
Query: 187 KLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKE 246
KLF+ GL+ T+EK L+A F G + EV +I D+ SK S+G+AFI + A A K+
Sbjct: 9 KLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSK-SRGFAFITFENPADAKNAAKD 67
Query: 247 MNGKIINGWMIVVDVAKTTPKYSRGRPR 274
MNGK ++G I V+ AK S GR R
Sbjct: 68 MNGKSLHGKAIKVEQAKKPSFQSGGRRR 95
>sp|P0C7P1|RBY1D_HUMAN RNA-binding motif protein, Y chromosome, family 1 member D OS=Homo
sapiens GN=RBMY1D PE=2 SV=1
Length = 496
Score = 66.6 bits (161), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 39/88 (44%), Positives = 53/88 (60%), Gaps = 1/88 (1%)
Query: 187 KLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKE 246
KLF+ GL+ T+EK L+A F G + EV +I D+ SK S+G+AFI + A A K+
Sbjct: 9 KLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSK-SRGFAFITFENPADAKNAAKD 67
Query: 247 MNGKIINGWMIVVDVAKTTPKYSRGRPR 274
MNGK ++G I V+ AK S GR R
Sbjct: 68 MNGKSLHGKAIKVEQAKKPSFQSGGRRR 95
>sp|P0DJD3|RBY1A_HUMAN RNA-binding motif protein, Y chromosome, family 1 member A1 OS=Homo
sapiens GN=RBMY1A1 PE=1 SV=1
Length = 496
Score = 66.6 bits (161), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 39/88 (44%), Positives = 53/88 (60%), Gaps = 1/88 (1%)
Query: 187 KLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKE 246
KLF+ GL+ T+EK L+A F G + EV +I D+ SK S+G+AFI + A A K+
Sbjct: 9 KLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSK-SRGFAFITFENPADAKNAAKD 67
Query: 247 MNGKIINGWMIVVDVAKTTPKYSRGRPR 274
MNGK ++G I V+ AK S GR R
Sbjct: 68 MNGKSLHGKAIKVEQAKKPSFQSGGRRR 95
>sp|Q4R7F0|RBMX_MACFA RNA-binding motif protein, X chromosome OS=Macaca fascicularis
GN=RBMX PE=2 SV=1
Length = 391
Score = 66.6 bits (161), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 54/85 (63%), Gaps = 1/85 (1%)
Query: 184 KTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAA 243
+ KLF+ GL+ T+EK L A F +G +VEV ++ D+ + +S+G+AF+ + + A A
Sbjct: 6 RPGKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDA 65
Query: 244 LKEMNGKIINGWMIVVDVAKTTPKY 268
++MNGK ++G I V+ A T P +
Sbjct: 66 ARDMNGKSLDGKAIKVEQA-TKPSF 89
>sp|A5A6M3|RBMX_PANTR RNA-binding motif protein, X chromosome OS=Pan troglodytes GN=RBMX
PE=2 SV=1
Length = 391
Score = 66.6 bits (161), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 54/85 (63%), Gaps = 1/85 (1%)
Query: 184 KTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAA 243
+ KLF+ GL+ T+EK L A F +G +VEV ++ D+ + +S+G+AF+ + + A A
Sbjct: 6 RPGKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDA 65
Query: 244 LKEMNGKIINGWMIVVDVAKTTPKY 268
++MNGK ++G I V+ A T P +
Sbjct: 66 ARDMNGKSLDGKAIKVEQA-TKPSF 89
>sp|P38159|RBMX_HUMAN RNA-binding motif protein, X chromosome OS=Homo sapiens GN=RBMX
PE=1 SV=3
Length = 391
Score = 66.6 bits (161), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 54/85 (63%), Gaps = 1/85 (1%)
Query: 184 KTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAA 243
+ KLF+ GL+ T+EK L A F +G +VEV ++ D+ + +S+G+AF+ + + A A
Sbjct: 6 RPGKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDA 65
Query: 244 LKEMNGKIINGWMIVVDVAKTTPKY 268
++MNGK ++G I V+ A T P +
Sbjct: 66 ARDMNGKSLDGKAIKVEQA-TKPSF 89
>sp|A6NDE4|RBY1B_HUMAN RNA-binding motif protein, Y chromosome, family 1 member B OS=Homo
sapiens GN=RBMY1B PE=2 SV=2
Length = 496
Score = 66.6 bits (161), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 39/88 (44%), Positives = 53/88 (60%), Gaps = 1/88 (1%)
Query: 187 KLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKE 246
KLF+ GL+ T+EK L+A F G + EV +I D+ SK S+G+AFI + A A K+
Sbjct: 9 KLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSK-SRGFAFITFENPADAKNAAKD 67
Query: 247 MNGKIINGWMIVVDVAKTTPKYSRGRPR 274
MNGK ++G I V+ AK S GR R
Sbjct: 68 MNGKSLHGKAIKVEQAKKPSFQSGGRRR 95
>sp|Q99070|GRP2_SORBI Glycine-rich RNA-binding protein 2 OS=Sorghum bicolor GN=GRP2 PE=2
SV=1
Length = 168
Score = 66.6 bits (161), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 55/78 (70%)
Query: 187 KLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKE 246
+ FV GL++ T+ +TL AF FG++++ K+I D+ + RS+G+ F+ +++E++ A++
Sbjct: 9 RCFVGGLAWATNNETLEQAFANFGQVIDSKVITDRETGRSRGFGFVTFSSEQSMLDAIEN 68
Query: 247 MNGKIINGWMIVVDVAKT 264
MNGK ++G I V+ A++
Sbjct: 69 MNGKELDGRNITVNQAQS 86
>sp|Q66II8|RU17_XENTR U1 small nuclear ribonucleoprotein 70 kDa OS=Xenopus tropicalis
GN=snrnp70 PE=2 SV=1
Length = 471
Score = 66.6 bits (161), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 48/78 (61%)
Query: 186 KKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALK 245
K LFV +++ T+E LR FE +G + + ++ +K S + +GYAFIEY E +A K
Sbjct: 103 KTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYNKRSGKPRGYAFIEYEHERDMHSAYK 162
Query: 246 EMNGKIINGWMIVVDVAK 263
+GK I+G ++VDV +
Sbjct: 163 HADGKKIDGRRVLVDVER 180
>sp|Q6IRQ4|RBMX_XENLA RNA-binding motif protein, X chromosome OS=Xenopus laevis GN=rbmx
PE=2 SV=1
Length = 370
Score = 66.2 bits (160), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 33/86 (38%), Positives = 55/86 (63%), Gaps = 1/86 (1%)
Query: 184 KTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAA 243
+ KLF+ GL+ T+EK L A F +G +VEV ++ D+ + +S+G+AF+ + + A A
Sbjct: 6 RPGKLFIGGLNTETNEKALEAVFCKYGRVVEVLLMKDRETNKSRGFAFVTFESPADAKDA 65
Query: 244 LKEMNGKIINGWMIVVDVAKTTPKYS 269
+E+NGK ++G I V+ A T P +S
Sbjct: 66 ARELNGKALDGKPIKVEQA-TKPSFS 90
>sp|P0C8Z4|RMXL3_PANTR RNA-binding motif protein, X-linked-like-3 OS=Pan troglodytes
GN=RBMXL3 PE=4 SV=1
Length = 992
Score = 66.2 bits (160), Expect = 2e-10, Method: Composition-based stats.
Identities = 30/76 (39%), Positives = 52/76 (68%)
Query: 184 KTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAA 243
+ +KLFV GL+ T EK L+A F +G +++V +I D+ + +S+G+AF+ + + A AA
Sbjct: 6 RPEKLFVGGLNLKTDEKALKAEFGKYGHIIKVFLIKDRKTNKSRGFAFVTFESPADAKAA 65
Query: 244 LKEMNGKIINGWMIVV 259
++MNGK ++G I+V
Sbjct: 66 ARDMNGKYLDGKAIMV 81
>sp|O93235|CIRBA_XENLA Cold-inducible RNA-binding protein A OS=Xenopus laevis GN=cirbp-a
PE=1 SV=2
Length = 166
Score = 66.2 bits (160), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 48/76 (63%)
Query: 187 KLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKE 246
KLF+ GL+F T+E L AF +G + EV ++ D+ +KRS+G+ F+ + + A A+
Sbjct: 6 KLFIGGLNFETNEDCLEQAFTKYGRISEVVVVKDRETKRSRGFGFVTFENVDDAKDAMMA 65
Query: 247 MNGKIINGWMIVVDVA 262
MNGK ++G I VD A
Sbjct: 66 MNGKSVDGRQIRVDQA 81
>sp|Q91VM5|RMXL1_MOUSE RNA binding motif protein, X-linked-like-1 OS=Mus musculus
GN=Rbmxl1 PE=1 SV=1
Length = 388
Score = 66.2 bits (160), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 51/79 (64%)
Query: 184 KTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAA 243
+ KLF+ GL+ T+EK L A F +G +VE+ ++ D+ + +S+G+AF+ + + A A
Sbjct: 6 RPGKLFIGGLNTETNEKALEAVFGKYGRIVEILLMKDRETNKSRGFAFVTFESPADAKDA 65
Query: 244 LKEMNGKIINGWMIVVDVA 262
++MNGK ++G I V+ A
Sbjct: 66 ARDMNGKSLDGKAIKVEQA 84
>sp|P49311|GRP2_SINAL Glycine-rich RNA-binding protein GRP2A OS=Sinapis alba PE=2 SV=1
Length = 169
Score = 65.9 bits (159), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 52/77 (67%)
Query: 187 KLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKE 246
+ FV GL++ T E++L AF FGELV+ KII D+ + RS+G+ F+ + E++ A++
Sbjct: 9 RCFVGGLAWATDERSLETAFSQFGELVDSKIINDRETGRSRGFGFVTFKDEKSMKDAIEG 68
Query: 247 MNGKIINGWMIVVDVAK 263
MNG+ ++G I V+ A+
Sbjct: 69 MNGQDLDGRSITVNEAQ 85
>sp|Q1RMR2|RU17_BOVIN U1 small nuclear ribonucleoprotein 70 kDa OS=Bos taurus GN=SNRNP70
PE=2 SV=1
Length = 439
Score = 65.9 bits (159), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 47/78 (60%)
Query: 186 KKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALK 245
K LFV +++ T+E LR FE +G + + ++ K S + +GYAFIEY E +A K
Sbjct: 103 KTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYK 162
Query: 246 EMNGKIINGWMIVVDVAK 263
+GK I+G ++VDV +
Sbjct: 163 HADGKKIDGRRVLVDVER 180
>sp|Q96E39|RMXL1_HUMAN RNA binding motif protein, X-linked-like-1 OS=Homo sapiens
GN=RBMXL1 PE=1 SV=1
Length = 390
Score = 65.9 bits (159), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 53/85 (62%), Gaps = 1/85 (1%)
Query: 184 KTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAA 243
+ KLF+ GL+ T+EK L F +G +VEV +I D+ + +S+G+AF+ + + A A
Sbjct: 6 RPGKLFIGGLNTETNEKALETVFGKYGRIVEVLLIKDRETNKSRGFAFVTFESPADAKDA 65
Query: 244 LKEMNGKIINGWMIVVDVAKTTPKY 268
++MNGK ++G I V+ A T P +
Sbjct: 66 ARDMNGKSLDGKAIKVEQA-TKPSF 89
>sp|P08621|RU17_HUMAN U1 small nuclear ribonucleoprotein 70 kDa OS=Homo sapiens
GN=SNRNP70 PE=1 SV=2
Length = 437
Score = 65.9 bits (159), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 47/78 (60%)
Query: 186 KKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALK 245
K LFV +++ T+E LR FE +G + + ++ K S + +GYAFIEY E +A K
Sbjct: 103 KTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYK 162
Query: 246 EMNGKIINGWMIVVDVAK 263
+GK I+G ++VDV +
Sbjct: 163 HADGKKIDGRRVLVDVER 180
>sp|Q62376|RU17_MOUSE U1 small nuclear ribonucleoprotein 70 kDa OS=Mus musculus
GN=Snrnp70 PE=1 SV=2
Length = 448
Score = 65.5 bits (158), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 47/78 (60%)
Query: 186 KKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALK 245
K LFV +++ T+E LR FE +G + + ++ K S + +GYAFIEY E +A K
Sbjct: 103 KTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYK 162
Query: 246 EMNGKIINGWMIVVDVAK 263
+GK I+G ++VDV +
Sbjct: 163 HADGKKIDGRRVLVDVER 180
>sp|Q54PB2|MRD1_DICDI Multiple RNA-binding domain-containing protein 1 OS=Dictyostelium
discoideum GN=mrd1 PE=3 SV=1
Length = 895
Score = 65.5 bits (158), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 34/80 (42%), Positives = 47/80 (58%)
Query: 187 KLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKE 246
++FV LS+ T E+ L F FG++ E+ I +D SK+SKG AFI Y E A AL +
Sbjct: 362 RIFVRNLSYSTKEEDLEKVFSKFGKISEIHIPIDYDSKKSKGIAFILYLIPENAVQALND 421
Query: 247 MNGKIINGWMIVVDVAKTTP 266
M+GK+ G +I V K P
Sbjct: 422 MDGKVFQGRLIHVLPGKAAP 441
Score = 47.0 bits (110), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 46/84 (54%), Gaps = 3/84 (3%)
Query: 190 VTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNG 249
V L + ++K + FE FG + + KII K +S+ + FI ++TE++A AL +NG
Sbjct: 8 VKQLPKHLTDKRFKEHFEKFGTVTDAKII--KKDGKSRLFGFIGFSTEQSAKNAL-SLNG 64
Query: 250 KIINGWMIVVDVAKTTPKYSRGRP 273
I+ IVV+ A + + RP
Sbjct: 65 TFIDTSKIVVETATVASETTENRP 88
Score = 41.2 bits (95), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 41/78 (52%), Gaps = 1/78 (1%)
Query: 185 TKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAAL 244
+ K+ + L F ++ K +R F +GE+ V+I K + +G+ F+E+ TEE A A+
Sbjct: 794 SSKIIIKNLPFESTIKEIRKLFTAYGEIQSVRI-PKKPNGGHRGFGFVEFLTEEEAKNAM 852
Query: 245 KEMNGKIINGWMIVVDVA 262
+ + G +V+ A
Sbjct: 853 EALGNSHFYGRHLVLQYA 870
Score = 38.5 bits (88), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 45/83 (54%), Gaps = 5/83 (6%)
Query: 185 TKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSK-----GYAFIEYTTEEA 239
T+ +++ L++ T+ +TL F+ + V V I K G+ FIE+++++
Sbjct: 677 TQFVYIKNLNWKTTNETLVGKFKSLKDYVNVNIATKANPKNPSERLPCGFGFIEFSSKQG 736
Query: 240 ASAALKEMNGKIINGWMIVVDVA 262
A +K++NG I+G+ I + ++
Sbjct: 737 AYECIKKLNGSSIDGYEISLKLS 759
>sp|Q03251|RBG8_ARATH Glycine-rich RNA-binding protein 8 OS=Arabidopsis thaliana GN=RBG8
PE=1 SV=1
Length = 169
Score = 65.5 bits (158), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 54/77 (70%)
Query: 187 KLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKE 246
+ FV GL++ T+++ L+ F FG++++ KII D+ S RS+G+ F+ + E+A A++E
Sbjct: 7 RCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEE 66
Query: 247 MNGKIINGWMIVVDVAK 263
MNGK ++G +I V+ A+
Sbjct: 67 MNGKELDGRVITVNEAQ 83
>sp|P62997|TRA2B_RAT Transformer-2 protein homolog beta OS=Rattus norvegicus GN=Tra2b
PE=1 SV=1
Length = 288
Score = 65.5 bits (158), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 35/92 (38%), Positives = 52/92 (56%), Gaps = 6/92 (6%)
Query: 188 LFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEM 247
L V GLS YT+E+ LR F +G + +V I+ D+ S+RS+G+AF+ + + A A +
Sbjct: 120 LGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERA 179
Query: 248 NGKIINGWMIVVDVAKT------TPKYSRGRP 273
NG ++G I VD + T TP GRP
Sbjct: 180 NGMELDGRRIRVDFSITKRPHTPTPGIYMGRP 211
>sp|P62996|TRA2B_MOUSE Transformer-2 protein homolog beta OS=Mus musculus GN=Tra2b PE=1
SV=1
Length = 288
Score = 65.5 bits (158), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 35/92 (38%), Positives = 52/92 (56%), Gaps = 6/92 (6%)
Query: 188 LFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEM 247
L V GLS YT+E+ LR F +G + +V I+ D+ S+RS+G+AF+ + + A A +
Sbjct: 120 LGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERA 179
Query: 248 NGKIINGWMIVVDVAKT------TPKYSRGRP 273
NG ++G I VD + T TP GRP
Sbjct: 180 NGMELDGRRIRVDFSITKRPHTPTPGIYMGRP 211
>sp|P62995|TRA2B_HUMAN Transformer-2 protein homolog beta OS=Homo sapiens GN=TRA2B PE=1
SV=1
Length = 288
Score = 65.5 bits (158), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 35/92 (38%), Positives = 52/92 (56%), Gaps = 6/92 (6%)
Query: 188 LFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEM 247
L V GLS YT+E+ LR F +G + +V I+ D+ S+RS+G+AF+ + + A A +
Sbjct: 120 LGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERA 179
Query: 248 NGKIINGWMIVVDVAKT------TPKYSRGRP 273
NG ++G I VD + T TP GRP
Sbjct: 180 NGMELDGRRIRVDFSITKRPHTPTPGIYMGRP 211
>sp|Q3ZBT6|TRA2B_BOVIN Transformer-2 protein homolog beta OS=Bos taurus GN=TRA2B PE=2 SV=1
Length = 288
Score = 65.5 bits (158), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 35/92 (38%), Positives = 52/92 (56%), Gaps = 6/92 (6%)
Query: 188 LFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEM 247
L V GLS YT+E+ LR F +G + +V I+ D+ S+RS+G+AF+ + + A A +
Sbjct: 120 LGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERA 179
Query: 248 NGKIINGWMIVVDVAKT------TPKYSRGRP 273
NG ++G I VD + T TP GRP
Sbjct: 180 NGMELDGRRIRVDFSITKRPHTPTPGIYMGRP 211
>sp|P0DJD4|RBY1C_HUMAN RNA-binding motif protein, Y chromosome, family 1 member C OS=Homo
sapiens GN=RBMY1C PE=1 SV=1
Length = 496
Score = 65.5 bits (158), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 38/88 (43%), Positives = 53/88 (60%), Gaps = 1/88 (1%)
Query: 187 KLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKE 246
KLF+ GL+ T+EK L+A F G + EV +I D+ SK S+G+AFI + A A K+
Sbjct: 9 KLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSK-SRGFAFITFENPADAKNAAKD 67
Query: 247 MNGKIINGWMIVVDVAKTTPKYSRGRPR 274
MNGK ++G I V+ A+ S GR R
Sbjct: 68 MNGKSLHGKAIKVEQAQKPSFQSGGRRR 95
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.133 0.403
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 104,458,581
Number of Sequences: 539616
Number of extensions: 4270728
Number of successful extensions: 12112
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 740
Number of HSP's successfully gapped in prelim test: 214
Number of HSP's that attempted gapping in prelim test: 10553
Number of HSP's gapped (non-prelim): 1560
length of query: 274
length of database: 191,569,459
effective HSP length: 116
effective length of query: 158
effective length of database: 128,974,003
effective search space: 20377892474
effective search space used: 20377892474
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (27.7 bits)