Query 024012
Match_columns 274
No_of_seqs 303 out of 2467
Neff 9.0
Searched_HMMs 46136
Date Fri Mar 29 08:16:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024012.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024012hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01659 sex-lethal sex-letha 100.0 1.4E-32 3E-37 243.3 19.5 168 63-267 105-277 (346)
2 KOG0117 Heterogeneous nuclear 100.0 6.4E-31 1.4E-35 228.5 18.6 220 19-271 44-337 (506)
3 TIGR01661 ELAV_HUD_SF ELAV/HuD 100.0 1.9E-30 4.2E-35 232.5 21.3 227 12-267 47-351 (352)
4 TIGR01645 half-pint poly-U bin 100.0 1.3E-30 2.8E-35 242.4 20.6 178 64-267 106-286 (612)
5 TIGR01622 SF-CC1 splicing fact 100.0 3.1E-29 6.7E-34 232.2 21.3 178 63-264 87-265 (457)
6 KOG0148 Apoptosis-promoting RN 100.0 7E-30 1.5E-34 209.4 14.9 173 66-266 63-239 (321)
7 TIGR01648 hnRNP-R-Q heterogene 100.0 9.5E-29 2.1E-33 229.6 22.3 218 18-268 18-310 (578)
8 TIGR01661 ELAV_HUD_SF ELAV/HuD 100.0 3.2E-29 7E-34 224.6 17.2 166 65-266 3-172 (352)
9 KOG0144 RNA-binding protein CU 100.0 3.1E-29 6.8E-34 217.1 11.4 183 55-269 24-210 (510)
10 TIGR01642 U2AF_lg U2 snRNP aux 100.0 4E-27 8.7E-32 220.9 26.2 191 63-265 173-375 (509)
11 TIGR01628 PABP-1234 polyadenyl 100.0 6.1E-28 1.3E-32 228.9 17.8 184 63-266 176-365 (562)
12 TIGR01628 PABP-1234 polyadenyl 99.9 1.6E-26 3.4E-31 219.2 19.8 171 64-266 87-262 (562)
13 KOG0145 RNA-binding protein EL 99.9 1.2E-26 2.6E-31 189.5 11.8 165 66-266 42-210 (360)
14 KOG0131 Splicing factor 3b, su 99.9 8.9E-27 1.9E-31 181.0 8.1 169 65-268 9-180 (203)
15 TIGR01642 U2AF_lg U2 snRNP aux 99.9 5.6E-24 1.2E-28 199.7 24.5 185 64-265 294-502 (509)
16 KOG0127 Nucleolar protein fibr 99.9 5.9E-25 1.3E-29 195.5 15.1 185 66-269 6-200 (678)
17 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.9 1.6E-24 3.4E-29 201.4 18.2 167 65-265 2-174 (481)
18 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.9 3.8E-24 8.3E-29 198.9 17.6 180 64-265 274-480 (481)
19 KOG0145 RNA-binding protein EL 99.9 2.4E-23 5.3E-28 170.2 18.5 227 11-266 84-359 (360)
20 KOG0127 Nucleolar protein fibr 99.9 1.6E-22 3.5E-27 180.1 17.9 183 67-266 119-379 (678)
21 TIGR01622 SF-CC1 splicing fact 99.9 1.1E-21 2.4E-26 181.8 22.6 181 64-265 185-448 (457)
22 KOG0109 RNA-binding protein LA 99.9 2.6E-23 5.7E-28 172.4 8.8 147 67-266 4-151 (346)
23 KOG0148 Apoptosis-promoting RN 99.9 1.3E-22 2.9E-27 166.7 11.8 143 65-271 6-148 (321)
24 KOG0123 Polyadenylate-binding 99.9 5.5E-22 1.2E-26 176.8 14.2 144 88-266 9-154 (369)
25 KOG4205 RNA-binding protein mu 99.9 2E-22 4.4E-27 173.9 10.7 171 64-267 5-178 (311)
26 KOG0124 Polypyrimidine tract-b 99.9 2.4E-22 5.2E-27 171.3 8.2 175 67-266 115-291 (544)
27 PLN03134 glycine-rich RNA-bind 99.9 1E-20 2.2E-25 147.8 14.4 85 183-267 32-116 (144)
28 KOG0110 RNA-binding protein (R 99.9 2.7E-21 5.8E-26 177.2 11.2 171 68-266 518-694 (725)
29 KOG0147 Transcriptional coacti 99.9 8.7E-22 1.9E-26 176.0 6.9 167 88-264 190-357 (549)
30 KOG0146 RNA-binding protein ET 99.8 9.4E-21 2E-25 155.6 10.8 86 182-267 282-367 (371)
31 KOG0123 Polyadenylate-binding 99.8 1.7E-20 3.6E-25 167.3 11.8 167 68-265 79-246 (369)
32 KOG0144 RNA-binding protein CU 99.8 2.1E-19 4.6E-24 156.3 12.1 83 184-266 423-505 (510)
33 PF00076 RRM_1: RNA recognitio 99.8 6.5E-18 1.4E-22 115.5 10.6 70 188-258 1-70 (70)
34 TIGR01659 sex-lethal sex-letha 99.7 9E-18 1.9E-22 149.0 11.8 86 181-266 103-188 (346)
35 KOG0122 Translation initiation 99.7 9E-18 1.9E-22 136.6 9.7 83 184-266 188-270 (270)
36 KOG0149 Predicted RNA-binding 99.7 2.3E-17 5.1E-22 133.7 7.6 80 184-264 11-90 (247)
37 PF14259 RRM_6: RNA recognitio 99.7 2.4E-16 5.1E-21 108.0 10.3 70 188-258 1-70 (70)
38 KOG4206 Spliceosomal protein s 99.7 8.1E-16 1.8E-20 124.4 14.9 171 67-263 11-220 (221)
39 KOG0125 Ataxin 2-binding prote 99.7 1.5E-16 3.3E-21 134.4 10.4 88 176-265 87-174 (376)
40 KOG0130 RNA-binding protein RB 99.7 1.1E-16 2.3E-21 119.0 7.6 88 179-266 66-153 (170)
41 TIGR01645 half-pint poly-U bin 99.7 4.5E-16 9.8E-21 145.6 10.8 82 184-265 106-187 (612)
42 KOG0105 Alternative splicing f 99.7 1.2E-14 2.7E-19 113.7 16.8 162 65-253 6-176 (241)
43 PLN03120 nucleic acid binding 99.7 7.7E-16 1.7E-20 128.8 10.6 76 185-264 4-79 (260)
44 KOG0121 Nuclear cap-binding pr 99.7 3E-16 6.4E-21 115.6 7.1 82 183-264 34-115 (153)
45 TIGR01648 hnRNP-R-Q heterogene 99.6 2.1E-15 4.6E-20 140.8 13.3 80 184-264 57-137 (578)
46 KOG0126 Predicted RNA-binding 99.6 3.1E-17 6.8E-22 127.8 0.2 79 185-263 35-113 (219)
47 KOG4207 Predicted splicing fac 99.6 6.5E-16 1.4E-20 122.8 7.5 84 181-264 9-92 (256)
48 KOG0111 Cyclophilin-type pepti 99.6 2.9E-16 6.3E-21 125.9 5.0 85 184-268 9-93 (298)
49 KOG0107 Alternative splicing f 99.6 1.7E-15 3.7E-20 117.6 8.7 81 185-270 10-90 (195)
50 PLN03213 repressor of silencin 99.6 2.2E-15 4.7E-20 133.6 10.2 79 183-265 8-88 (759)
51 KOG0113 U1 small nuclear ribon 99.6 4.4E-15 9.5E-20 124.2 10.7 83 183-265 99-181 (335)
52 smart00362 RRM_2 RNA recogniti 99.6 6.8E-15 1.5E-19 100.0 9.8 72 187-260 1-72 (72)
53 KOG0106 Alternative splicing f 99.6 2.2E-15 4.8E-20 122.9 8.5 164 68-265 4-171 (216)
54 KOG0117 Heterogeneous nuclear 99.6 7.8E-15 1.7E-19 128.7 11.0 85 183-267 81-166 (506)
55 KOG0110 RNA-binding protein (R 99.6 1.8E-14 3.9E-19 132.8 13.9 182 64-266 383-599 (725)
56 smart00360 RRM RNA recognition 99.6 8.7E-15 1.9E-19 99.1 8.8 71 190-260 1-71 (71)
57 PLN03121 nucleic acid binding 99.6 1.5E-14 3.2E-19 119.3 10.7 76 184-263 4-79 (243)
58 KOG4211 Splicing factor hnRNP- 99.6 3E-14 6.4E-19 126.6 13.1 163 67-263 11-180 (510)
59 KOG0114 Predicted RNA-binding 99.6 2.9E-14 6.3E-19 101.3 9.5 81 183-266 16-96 (124)
60 KOG0108 mRNA cleavage and poly 99.5 9.2E-15 2E-19 131.8 7.5 83 186-268 19-101 (435)
61 cd00590 RRM RRM (RNA recogniti 99.5 1E-13 2.3E-18 94.6 10.6 74 187-261 1-74 (74)
62 COG0724 RNA-binding proteins ( 99.5 4.5E-14 9.7E-19 120.9 10.5 80 185-264 115-194 (306)
63 KOG0147 Transcriptional coacti 99.5 4.6E-14 1E-18 126.9 10.7 175 68-264 281-527 (549)
64 KOG0131 Splicing factor 3b, su 99.5 2.2E-14 4.8E-19 112.1 6.3 81 184-264 8-88 (203)
65 smart00361 RRM_1 RNA recogniti 99.5 1.1E-13 2.4E-18 94.8 8.7 62 199-260 2-70 (70)
66 PF13893 RRM_5: RNA recognitio 99.5 1.6E-13 3.4E-18 89.8 8.5 56 202-262 1-56 (56)
67 KOG0120 Splicing factor U2AF, 99.5 7.3E-13 1.6E-17 120.4 14.0 183 66-265 290-492 (500)
68 KOG4212 RNA-binding protein hn 99.5 1.5E-12 3.3E-17 114.1 15.3 192 56-264 35-293 (608)
69 KOG1548 Transcription elongati 99.4 1.1E-11 2.3E-16 106.0 15.7 186 58-265 126-352 (382)
70 KOG1457 RNA binding protein (c 99.4 8.1E-12 1.8E-16 100.8 14.0 65 185-253 210-274 (284)
71 KOG0105 Alternative splicing f 99.4 6.7E-13 1.5E-17 104.1 7.3 79 184-265 5-83 (241)
72 KOG0415 Predicted peptidyl pro 99.4 5.7E-13 1.2E-17 113.9 6.7 87 180-266 234-320 (479)
73 KOG0124 Polypyrimidine tract-b 99.4 3.9E-13 8.4E-18 115.4 4.8 80 185-264 113-192 (544)
74 COG0724 RNA-binding proteins ( 99.4 1.1E-11 2.4E-16 106.0 13.6 169 65-250 115-290 (306)
75 KOG0109 RNA-binding protein LA 99.4 1.2E-12 2.6E-17 109.3 6.8 74 186-267 3-76 (346)
76 KOG4206 Spliceosomal protein s 99.4 2.6E-12 5.7E-17 104.1 8.3 81 184-267 8-92 (221)
77 KOG0146 RNA-binding protein ET 99.4 8.4E-13 1.8E-17 109.1 5.1 85 183-268 17-104 (371)
78 KOG4208 Nucleolar RNA-binding 99.3 4.4E-12 9.6E-17 101.3 8.5 86 180-265 44-130 (214)
79 KOG4212 RNA-binding protein hn 99.3 5.3E-12 1.1E-16 110.8 9.0 83 184-267 43-126 (608)
80 KOG0149 Predicted RNA-binding 99.3 3.9E-12 8.5E-17 103.5 7.5 71 61-148 8-80 (247)
81 PLN03134 glycine-rich RNA-bind 99.3 4.4E-12 9.6E-17 99.1 7.3 65 64-145 33-99 (144)
82 KOG0120 Splicing factor U2AF, 99.3 1.6E-11 3.6E-16 111.6 10.2 185 68-266 178-370 (500)
83 KOG4210 Nuclear localization s 99.3 6.2E-12 1.3E-16 108.6 6.4 178 65-269 88-268 (285)
84 KOG0153 Predicted RNA-binding 99.3 2.1E-11 4.6E-16 104.3 9.2 81 179-265 222-303 (377)
85 PF00076 RRM_1: RNA recognitio 99.2 8.1E-12 1.8E-16 84.9 3.6 62 68-146 1-63 (70)
86 KOG0112 Large RNA-binding prot 99.2 1.1E-11 2.3E-16 117.3 5.2 159 63-265 370-531 (975)
87 KOG0132 RNA polymerase II C-te 99.2 5.5E-11 1.2E-15 110.9 7.9 77 184-266 420-496 (894)
88 KOG4205 RNA-binding protein mu 99.2 2.6E-11 5.5E-16 105.2 5.3 83 184-267 5-87 (311)
89 KOG1365 RNA-binding protein Fu 99.2 2E-10 4.3E-15 99.5 10.5 185 66-263 161-360 (508)
90 KOG4661 Hsp27-ERE-TATA-binding 99.2 1.2E-10 2.5E-15 105.5 9.4 83 184-266 404-486 (940)
91 KOG0226 RNA-binding proteins [ 99.1 5.2E-11 1.1E-15 97.9 5.1 84 182-265 187-270 (290)
92 PLN03120 nucleic acid binding 99.1 1.8E-10 3.8E-15 96.8 6.8 62 65-145 4-65 (260)
93 PLN03121 nucleic acid binding 99.1 3.1E-10 6.7E-15 93.9 7.4 64 64-146 4-67 (243)
94 KOG1457 RNA binding protein (c 99.1 2.4E-09 5.3E-14 86.6 12.1 92 181-272 30-125 (284)
95 KOG0128 RNA-binding protein SA 99.1 1.4E-11 3E-16 116.1 -1.5 147 67-266 669-816 (881)
96 KOG1190 Polypyrimidine tract-b 99.0 6.6E-09 1.4E-13 90.9 14.0 76 185-265 297-373 (492)
97 KOG1190 Polypyrimidine tract-b 99.0 7.3E-09 1.6E-13 90.6 14.1 175 66-265 298-491 (492)
98 KOG0129 Predicted RNA-binding 99.0 2.6E-09 5.7E-14 96.1 11.5 163 62-246 256-432 (520)
99 KOG0533 RRM motif-containing p 99.0 1.3E-09 2.9E-14 91.1 8.9 82 184-266 82-163 (243)
100 KOG4454 RNA binding protein (R 99.0 7.2E-11 1.6E-15 95.1 -0.7 139 63-252 7-150 (267)
101 KOG0122 Translation initiation 99.0 2.7E-09 5.9E-14 87.5 8.0 65 64-145 188-254 (270)
102 KOG1548 Transcription elongati 99.0 4.1E-09 8.9E-14 90.4 9.4 86 182-268 131-224 (382)
103 PF14259 RRM_6: RNA recognitio 98.9 4.7E-10 1E-14 76.5 2.9 59 68-143 1-59 (70)
104 KOG0121 Nuclear cap-binding pr 98.9 1.2E-09 2.5E-14 81.0 4.5 65 64-145 35-101 (153)
105 KOG4209 Splicing factor RNPS1, 98.9 2.3E-09 4.9E-14 89.9 6.9 83 182-265 98-180 (231)
106 PF04059 RRM_2: RNA recognitio 98.9 1.2E-08 2.7E-13 73.5 9.1 82 186-267 2-89 (97)
107 KOG0116 RasGAP SH3 binding pro 98.9 5.5E-09 1.2E-13 94.2 8.4 81 185-266 288-368 (419)
108 KOG4211 Splicing factor hnRNP- 98.9 4.8E-08 1E-12 87.5 13.9 179 65-262 102-355 (510)
109 KOG0126 Predicted RNA-binding 98.9 1.6E-10 3.5E-15 90.5 -2.3 72 57-145 27-100 (219)
110 KOG4207 Predicted splicing fac 98.8 6.9E-09 1.5E-13 83.1 5.9 68 62-145 9-78 (256)
111 KOG0151 Predicted splicing reg 98.8 9.7E-09 2.1E-13 95.3 6.9 84 182-265 171-257 (877)
112 KOG0113 U1 small nuclear ribon 98.8 1.4E-08 3.1E-13 85.5 7.1 59 66-141 102-161 (335)
113 KOG0114 Predicted RNA-binding 98.8 1.1E-08 2.3E-13 73.2 5.2 66 61-145 14-80 (124)
114 KOG4660 Protein Mei2, essentia 98.8 5E-09 1.1E-13 95.0 4.4 75 179-258 69-143 (549)
115 KOG1456 Heterogeneous nuclear 98.8 1.4E-07 3.1E-12 81.8 12.4 165 64-266 30-200 (494)
116 KOG0106 Alternative splicing f 98.8 1.1E-08 2.5E-13 83.8 5.2 73 186-266 2-74 (216)
117 PLN03213 repressor of silencin 98.7 1.7E-08 3.8E-13 90.3 6.0 62 64-145 9-73 (759)
118 smart00362 RRM_2 RNA recogniti 98.7 3.4E-08 7.4E-13 66.4 6.0 59 68-144 2-61 (72)
119 smart00360 RRM RNA recognition 98.7 6E-08 1.3E-12 64.9 6.5 55 71-141 1-56 (71)
120 KOG4454 RNA binding protein (R 98.7 8E-09 1.7E-13 83.5 2.4 80 183-264 7-86 (267)
121 KOG0125 Ataxin 2-binding prote 98.6 7.3E-08 1.6E-12 82.3 7.2 62 66-145 97-159 (376)
122 KOG4208 Nucleolar RNA-binding 98.6 6.4E-08 1.4E-12 77.7 5.2 65 68-147 51-117 (214)
123 KOG0108 mRNA cleavage and poly 98.6 6.9E-08 1.5E-12 87.6 5.4 63 66-145 19-83 (435)
124 KOG0107 Alternative splicing f 98.6 8.3E-08 1.8E-12 75.1 5.1 60 65-145 10-70 (195)
125 smart00361 RRM_1 RNA recogniti 98.5 1.4E-07 3E-12 64.3 4.7 55 91-146 2-61 (70)
126 cd00590 RRM RRM (RNA recogniti 98.5 3.7E-07 8E-12 61.6 6.1 57 68-141 2-58 (74)
127 KOG1365 RNA-binding protein Fu 98.5 4.7E-06 1E-10 72.8 13.1 172 61-256 55-234 (508)
128 KOG1456 Heterogeneous nuclear 98.4 1.5E-05 3.1E-10 69.6 15.8 78 183-265 285-363 (494)
129 KOG0111 Cyclophilin-type pepti 98.4 1.2E-07 2.6E-12 76.7 2.6 66 63-145 8-75 (298)
130 KOG4307 RNA binding protein RB 98.4 1.6E-06 3.4E-11 80.9 8.9 167 88-262 322-511 (944)
131 PF11608 Limkain-b1: Limkain b 98.3 2.1E-06 4.6E-11 59.2 6.4 70 186-265 3-77 (90)
132 KOG1995 Conserved Zn-finger pr 98.3 8.2E-07 1.8E-11 77.0 4.9 85 182-266 63-155 (351)
133 PF08777 RRM_3: RNA binding mo 98.2 5.3E-06 1.1E-10 61.1 6.4 70 186-261 2-76 (105)
134 COG5175 MOT2 Transcriptional r 98.2 4.9E-06 1.1E-10 71.5 6.5 82 184-265 113-203 (480)
135 KOG0130 RNA-binding protein RB 98.1 4.2E-06 9.1E-11 62.9 4.7 53 88-145 83-137 (170)
136 KOG0415 Predicted peptidyl pro 98.1 3.3E-06 7.2E-11 73.0 4.4 67 63-146 237-305 (479)
137 KOG2193 IGF-II mRNA-binding pr 98.0 5E-07 1.1E-11 79.7 -2.6 150 68-263 4-155 (584)
138 KOG2314 Translation initiation 98.0 3.9E-05 8.3E-10 70.3 9.1 79 184-263 57-142 (698)
139 KOG0153 Predicted RNA-binding 97.9 1.5E-05 3.2E-10 68.9 5.0 57 61-139 224-280 (377)
140 PF14605 Nup35_RRM_2: Nup53/35 97.9 3.9E-05 8.4E-10 49.1 5.1 52 186-244 2-53 (53)
141 KOG0128 RNA-binding protein SA 97.8 1.3E-06 2.8E-11 83.1 -3.3 146 93-253 588-735 (881)
142 KOG4660 Protein Mei2, essentia 97.8 3.3E-05 7.1E-10 70.7 5.6 173 61-264 71-249 (549)
143 KOG4307 RNA binding protein RB 97.8 8.1E-05 1.8E-09 69.8 8.0 75 186-261 868-943 (944)
144 KOG4849 mRNA cleavage factor I 97.8 1.8E-05 3.8E-10 68.5 3.4 80 185-264 80-162 (498)
145 PF13893 RRM_5: RNA recognitio 97.8 1.6E-05 3.4E-10 51.5 2.0 44 94-146 1-45 (56)
146 PF05172 Nup35_RRM: Nup53/35/4 97.7 0.00023 4.9E-09 51.7 8.0 78 185-264 6-91 (100)
147 KOG0132 RNA polymerase II C-te 97.7 3.8E-05 8.3E-10 72.7 4.9 56 63-140 419-474 (894)
148 KOG0116 RasGAP SH3 binding pro 97.7 4.6E-05 9.9E-10 69.1 5.2 60 67-143 290-350 (419)
149 KOG0226 RNA-binding proteins [ 97.7 6.3E-05 1.4E-09 62.5 5.4 65 64-145 189-255 (290)
150 KOG3152 TBP-binding protein, a 97.7 2.3E-05 5E-10 65.1 2.7 73 184-256 73-157 (278)
151 KOG4676 Splicing factor, argin 97.7 5.3E-06 1.1E-10 72.6 -1.2 178 68-266 9-227 (479)
152 KOG4209 Splicing factor RNPS1, 97.6 6.1E-05 1.3E-09 63.3 3.6 68 62-146 98-166 (231)
153 KOG0533 RRM motif-containing p 97.4 0.00029 6.3E-09 59.3 5.7 67 62-145 80-147 (243)
154 PF08952 DUF1866: Domain of un 97.4 0.00079 1.7E-08 51.9 7.1 57 200-265 51-107 (146)
155 KOG2202 U2 snRNP splicing fact 97.3 8.6E-05 1.9E-09 61.9 1.5 63 200-263 83-146 (260)
156 KOG1996 mRNA splicing factor [ 97.3 0.00078 1.7E-08 57.2 7.1 65 199-263 300-365 (378)
157 KOG1855 Predicted RNA-binding 97.3 0.00028 6.1E-09 62.8 4.3 69 182-250 228-309 (484)
158 PF08675 RNA_bind: RNA binding 97.2 0.0022 4.7E-08 44.5 7.3 55 185-248 9-63 (87)
159 PF15023 DUF4523: Protein of u 97.1 0.0051 1.1E-07 47.0 9.0 77 179-263 80-160 (166)
160 PF04059 RRM_2: RNA recognitio 97.1 0.0018 4E-08 46.7 6.1 66 66-146 2-69 (97)
161 KOG2416 Acinus (induces apopto 96.9 0.0014 3.1E-08 60.6 4.9 81 179-265 438-522 (718)
162 PF10309 DUF2414: Protein of u 96.9 0.0066 1.4E-07 39.9 6.7 55 185-247 5-62 (62)
163 PF14605 Nup35_RRM_2: Nup53/35 96.9 0.003 6.5E-08 40.3 5.0 53 75-140 1-53 (53)
164 KOG4661 Hsp27-ERE-TATA-binding 96.8 0.0037 7.9E-08 57.8 7.2 63 62-141 402-465 (940)
165 KOG2193 IGF-II mRNA-binding pr 96.8 0.00082 1.8E-08 59.8 2.6 78 186-269 2-80 (584)
166 KOG0151 Predicted splicing reg 96.7 0.0027 5.7E-08 60.1 5.5 73 56-145 165-242 (877)
167 KOG0115 RNA-binding protein p5 96.7 0.0019 4.1E-08 54.0 4.0 62 186-248 32-93 (275)
168 KOG4676 Splicing factor, argin 96.6 0.0027 5.8E-08 56.1 4.5 76 186-262 8-86 (479)
169 KOG0112 Large RNA-binding prot 96.5 0.00086 1.9E-08 64.8 0.7 81 182-263 369-449 (975)
170 KOG0129 Predicted RNA-binding 96.4 0.0057 1.2E-07 55.9 5.4 63 184-247 258-326 (520)
171 KOG2068 MOT2 transcription fac 96.4 0.0012 2.7E-08 57.3 0.8 81 184-265 76-163 (327)
172 PF07576 BRAP2: BRCA1-associat 96.2 0.083 1.8E-06 39.1 9.6 68 185-254 13-81 (110)
173 KOG4849 mRNA cleavage factor I 96.1 0.0052 1.1E-07 53.5 3.3 62 67-142 81-143 (498)
174 KOG2135 Proteins containing th 96.0 0.0055 1.2E-07 55.4 3.2 74 185-265 372-446 (526)
175 PF03467 Smg4_UPF3: Smg-4/UPF3 96.0 0.02 4.3E-07 46.2 5.9 81 185-265 7-98 (176)
176 KOG2314 Translation initiation 95.7 0.025 5.5E-07 52.4 6.1 60 86-146 69-129 (698)
177 PF04847 Calcipressin: Calcipr 95.6 0.045 9.8E-07 44.4 6.7 63 198-266 8-72 (184)
178 KOG4574 RNA-binding protein (c 94.7 0.024 5.1E-07 55.0 2.9 77 187-269 300-378 (1007)
179 KOG1855 Predicted RNA-binding 94.7 0.025 5.3E-07 50.8 2.7 66 61-143 227-306 (484)
180 PF03880 DbpA: DbpA RNA bindin 94.6 0.21 4.5E-06 34.1 6.6 67 187-262 2-74 (74)
181 PF05172 Nup35_RRM: Nup53/35/4 94.3 0.099 2.2E-06 38.0 4.8 64 76-147 7-78 (100)
182 KOG4285 Mitotic phosphoprotein 93.8 0.24 5.2E-06 42.7 6.8 70 187-264 199-269 (350)
183 KOG0804 Cytoplasmic Zn-finger 93.3 0.39 8.4E-06 43.7 7.5 68 185-254 74-142 (493)
184 KOG2591 c-Mpl binding protein, 93.1 0.21 4.6E-06 46.4 5.7 70 185-261 175-248 (684)
185 KOG1995 Conserved Zn-finger pr 92.6 0.16 3.4E-06 44.8 4.0 61 65-142 66-135 (351)
186 KOG4210 Nuclear localization s 92.5 0.06 1.3E-06 46.9 1.4 82 184-265 87-168 (285)
187 PF11767 SET_assoc: Histone ly 91.7 1.3 2.7E-05 29.6 6.6 55 196-259 11-65 (66)
188 PF08777 RRM_3: RNA binding mo 91.3 0.14 3.1E-06 37.5 2.0 44 88-141 12-55 (105)
189 KOG2318 Uncharacterized conser 90.9 1 2.3E-05 42.2 7.5 79 182-260 171-301 (650)
190 PF07292 NID: Nmi/IFP 35 domai 90.4 0.14 3E-06 36.2 1.2 23 183-205 50-72 (88)
191 PF11608 Limkain-b1: Limkain b 90.3 0.84 1.8E-05 31.9 4.9 54 71-144 7-61 (90)
192 KOG2253 U1 snRNP complex, subu 87.5 0.72 1.6E-05 43.9 4.0 61 56-141 31-91 (668)
193 KOG2253 U1 snRNP complex, subu 86.2 1.2 2.7E-05 42.4 4.9 71 182-261 37-107 (668)
194 KOG0115 RNA-binding protein p5 82.1 1.5 3.3E-05 37.1 3.2 56 68-140 34-89 (275)
195 COG5638 Uncharacterized conser 79.3 6.6 0.00014 35.6 6.4 149 72-261 143-294 (622)
196 KOG4410 5-formyltetrahydrofola 78.8 9 0.0002 33.0 6.8 48 184-237 329-377 (396)
197 KOG4019 Calcineurin-mediated s 73.5 3.2 6.9E-05 33.3 2.6 76 185-266 10-91 (193)
198 KOG4285 Mitotic phosphoprotein 72.4 8.9 0.00019 33.4 5.2 59 75-146 197-255 (350)
199 COG5175 MOT2 Transcriptional r 71.9 5.6 0.00012 35.1 4.0 46 95-145 138-188 (480)
200 KOG2416 Acinus (induces apopto 69.6 2.7 5.9E-05 39.8 1.6 63 63-146 442-505 (718)
201 PF03468 XS: XS domain; Inter 68.0 8.1 0.00018 28.8 3.7 38 198-238 30-67 (116)
202 KOG2202 U2 snRNP splicing fact 67.7 4.2 9E-05 34.5 2.2 43 102-144 89-132 (260)
203 PF08952 DUF1866: Domain of un 65.9 5.8 0.00012 30.8 2.5 49 89-145 44-92 (146)
204 PF05922 Inhibitor_I9: Peptida 62.3 10 0.00022 25.7 3.1 31 10-40 48-78 (82)
205 PF10567 Nab6_mRNP_bdg: RNA-re 61.9 18 0.00039 31.4 5.0 80 184-263 14-106 (309)
206 KOG4365 Uncharacterized conser 60.2 1.2 2.6E-05 40.5 -2.3 80 185-265 3-82 (572)
207 PF07576 BRAP2: BRCA1-associat 60.0 39 0.00085 24.9 6.0 66 64-145 11-77 (110)
208 KOG4483 Uncharacterized conser 58.3 29 0.00062 31.6 5.8 56 184-246 390-446 (528)
209 KOG2591 c-Mpl binding protein, 53.6 16 0.00035 34.5 3.6 106 15-141 120-230 (684)
210 KOG3152 TBP-binding protein, a 51.8 10 0.00022 32.3 1.8 62 67-145 76-151 (278)
211 PF14111 DUF4283: Domain of un 47.8 63 0.0014 24.7 5.8 108 89-219 29-139 (153)
212 PF15513 DUF4651: Domain of un 46.9 45 0.00098 21.8 3.9 19 200-218 9-27 (62)
213 KOG2295 C2H2 Zn-finger protein 45.2 2.8 6.1E-05 39.3 -2.5 73 184-256 230-302 (648)
214 KOG2891 Surface glycoprotein [ 45.2 21 0.00046 30.7 2.8 81 185-265 149-268 (445)
215 COG5193 LHP1 La protein, small 43.6 10 0.00022 34.4 0.7 61 185-245 174-244 (438)
216 PF11245 DUF2544: Protein of u 43.3 9.4 0.0002 31.7 0.4 9 4-12 118-126 (230)
217 KOG3424 40S ribosomal protein 43.0 1.1E+02 0.0024 22.9 5.8 53 83-140 29-86 (132)
218 KOG1996 mRNA splicing factor [ 42.5 61 0.0013 28.3 5.2 49 93-146 302-353 (378)
219 KOG4483 Uncharacterized conser 42.0 1.4E+02 0.003 27.4 7.4 68 73-153 389-458 (528)
220 PF15023 DUF4523: Protein of u 41.9 1.3E+02 0.0028 23.5 6.3 43 90-140 100-142 (166)
221 smart00596 PRE_C2HC PRE_C2HC d 41.3 44 0.00095 22.4 3.3 61 200-263 2-63 (69)
222 PF07530 PRE_C2HC: Associated 39.2 73 0.0016 21.2 4.2 63 200-265 2-65 (68)
223 PRK14548 50S ribosomal protein 31.5 1.8E+02 0.004 20.3 5.8 58 187-247 22-81 (84)
224 PF11411 DNA_ligase_IV: DNA li 31.3 39 0.00086 19.5 1.6 16 195-210 19-34 (36)
225 PRK09507 cspE cold shock prote 29.8 16 0.00035 24.4 -0.2 13 120-132 12-24 (69)
226 KOG1295 Nonsense-mediated deca 29.8 76 0.0017 28.7 3.9 69 185-253 7-78 (376)
227 KOG4008 rRNA processing protei 29.6 47 0.001 28.0 2.4 33 183-215 38-70 (261)
228 PF11823 DUF3343: Protein of u 28.0 78 0.0017 21.1 3.0 26 229-254 3-28 (73)
229 PF03439 Spt5-NGN: Early trans 25.9 1.1E+02 0.0024 21.1 3.5 36 211-251 33-68 (84)
230 PF08206 OB_RNB: Ribonuclease 24.9 53 0.0012 20.9 1.6 12 121-132 6-17 (58)
231 PRK15464 cold shock-like prote 24.8 39 0.00085 22.7 1.0 13 120-132 13-25 (70)
232 PRK11901 hypothetical protein; 24.7 1.8E+02 0.0039 25.9 5.2 60 185-249 245-306 (327)
233 PRK09937 stationary phase/star 24.0 47 0.001 22.6 1.3 12 120-131 10-21 (74)
234 PRK14998 cold shock-like prote 23.7 48 0.001 22.4 1.3 13 120-132 10-22 (73)
235 PF14972 Mito_morph_reg: Mitoc 23.3 27 0.00059 27.5 0.0 26 3-30 95-121 (165)
236 PF14657 Integrase_AP2: AP2-li 22.8 1.8E+02 0.0039 17.3 3.8 30 219-248 9-38 (46)
237 PRK15463 cold shock-like prote 22.2 48 0.001 22.2 1.0 13 120-132 13-25 (70)
238 KOG4213 RNA-binding protein La 22.0 1.2E+02 0.0025 24.6 3.3 55 185-246 111-169 (205)
239 PF04026 SpoVG: SpoVG; InterP 21.9 2.1E+02 0.0045 20.0 4.2 26 211-236 2-27 (84)
240 cd01780 PLC_epsilon_RA Ubiquit 21.5 41 0.00089 23.9 0.6 14 1-14 3-16 (93)
241 PRK10943 cold shock-like prote 21.2 50 0.0011 22.0 1.0 13 120-132 12-24 (69)
242 TIGR02381 cspD cold shock doma 21.0 59 0.0013 21.5 1.3 13 120-132 10-22 (68)
243 PF02714 DUF221: Domain of unk 20.5 1.3E+02 0.0028 26.4 3.7 16 126-141 1-16 (325)
244 TIGR03636 L23_arch archaeal ri 20.5 2.9E+02 0.0064 18.9 5.9 58 187-247 15-74 (77)
245 PRK11558 putative ssRNA endonu 20.1 1.8E+02 0.004 20.9 3.7 49 185-236 27-75 (97)
No 1
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=100.00 E-value=1.4e-32 Score=243.29 Aligned_cols=168 Identities=20% Similarity=0.314 Sum_probs=139.5
Q ss_pred CCceeeeecCCCcceeEEecCCCCCCCCHHHHHHHHHHHHHhhhCCcccceEEEe-cCCCCCCeEEeeeCCHHHHHHHH-
Q 024012 63 IGTTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIY-HVSWQSNFGFCCELDDECAQELT- 140 (274)
Q Consensus 63 ~~s~~lf~vgnl~~~~~~~~~p~~~~~t~~~L~~~F~~~l~~~~G~v~~v~i~~~-~~g~srgfgFV~f~~~e~a~~a~- 140 (274)
...++|| |+|||+ ++|+++|+++|.++ |.|++|+|+.+ .+++++|||||+|.++++|++|+
T Consensus 105 ~~~~~Lf-VgnLp~-----------~~te~~L~~lF~~~-----G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~ 167 (346)
T TIGR01659 105 NSGTNLI-VNYLPQ-----------DMTDRELYALFRTI-----GPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIK 167 (346)
T ss_pred CCCcEEE-EeCCCC-----------CCCHHHHHHHHHhc-----CCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHH
Confidence 4567899 999999 69999999999988 99999998875 68999999999999999996666
Q ss_pred CCCCceee-cCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEe
Q 024012 141 GVPGVLSV-QPDENFGSENKDYGGNNLQNSMVPSDSSEASPTQIKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIM 219 (274)
Q Consensus 141 ~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~ 219 (274)
+|+|.... ++.. ... ..........++|||+|||..+|+++|+++|++||.|+.++|++
T Consensus 168 ~LnG~~l~gr~i~---------------V~~-----a~p~~~~~~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~ 227 (346)
T TIGR01659 168 NLNGITVRNKRLK---------------VSY-----ARPGGESIKDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILR 227 (346)
T ss_pred HcCCCccCCceee---------------eec-----ccccccccccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEee
Confidence 57775321 1110 000 00011122356899999999999999999999999999999999
Q ss_pred cCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCC--EEeEEEeecCCCC
Q 024012 220 DKISKRSKGYAFIEYTTEEAASAALKEMNGKIING--WMIVVDVAKTTPK 267 (274)
Q Consensus 220 d~~~g~~rG~aFV~F~s~~~A~~Ai~~l~g~~l~G--~~l~V~~a~~~~~ 267 (274)
|+.++++||||||+|.+.++|++||+.||+..+.| ++|+|.+|+...+
T Consensus 228 d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~~~g~~~~l~V~~a~~~~~ 277 (346)
T TIGR01659 228 DKLTGTPRGVAFVRFNKREEAQEAISALNNVIPEGGSQPLTVRLAEEHGK 277 (346)
T ss_pred cCCCCccceEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEEECCcccc
Confidence 99999999999999999999999999999999876 7999999987643
No 2
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.97 E-value=6.4e-31 Score=228.54 Aligned_cols=220 Identities=25% Similarity=0.322 Sum_probs=161.7
Q ss_pred ChhhHHHHhcCCceeEeccCCCCCccccCCCcCCCCCCCCCC-CCCCceeeeecCCCcceeEEecCCCCCCCCHHHHHHH
Q 024012 19 DEETSRELARLPGVLTVRPDPDYNSVKKDYSCLDIQMSNPWN-SQIGTTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDR 97 (274)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~-~~~~s~~lf~vgnl~~~~~~~~~p~~~~~t~~~L~~~ 97 (274)
||++..+|...-+...+.. +. +++|. .++..|.. +++....+| ||.||. ++.|++|+.+
T Consensus 44 ~eaal~al~E~tgy~l~ve----~g-qrk~g---gPpP~weg~~p~~G~EVf-vGkIPr-----------D~~EdeLvpl 103 (506)
T KOG0117|consen 44 EEAALKALLERTGYTLVVE----NG-QRKYG---GPPPGWEGPPPPRGCEVF-VGKIPR-----------DVFEDELVPL 103 (506)
T ss_pred HHHHHHHHHHhcCceEEEe----cc-ccccC---CCCCcccCCCCCCCceEE-ecCCCc-----------cccchhhHHH
Confidence 5666777666555444322 11 13333 33333666 557788899 999999 8999999999
Q ss_pred HHHHHHhhhCCcccceEEEe-cCCCCCCeEEeeeCCHHHHHHHHC-CCCc------------------------------
Q 024012 98 YAQILTKVLGNEKDAQMCIY-HVSWQSNFGFCCELDDECAQELTG-VPGV------------------------------ 145 (274)
Q Consensus 98 F~~~l~~~~G~v~~v~i~~~-~~g~srgfgFV~f~~~e~a~~a~~-~~g~------------------------------ 145 (274)
|+++ |+|.++|+|++ .+|.+||||||+|.+.+.|++|++ +|+.
T Consensus 104 fEki-----G~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~igvc~Svan~RLFiG~IPK~k~k 178 (506)
T KOG0117|consen 104 FEKI-----GKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLLGVCVSVANCRLFIGNIPKTKKK 178 (506)
T ss_pred HHhc-----cceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCEeEEEEeeecceeEeccCCccccH
Confidence 9999 99999998886 789999999999999999966654 4522
Q ss_pred --------------eee--cCCCCCCCCCCC-------------------------CCCCCCCCCCCCCCCCCCCCCCcc
Q 024012 146 --------------LSV--QPDENFGSENKD-------------------------YGGNNLQNSMVPSDSSEASPTQIK 184 (274)
Q Consensus 146 --------------~~~--~~~~~~~~~~~~-------------------------~~~~~~~~~~~~~~~~~~~~~~~~ 184 (274)
+.+ .+.......++. ..++.....++.+...........
T Consensus 179 eeIlee~~kVteGVvdVivy~~p~dk~KNRGFaFveYe~H~~Aa~aRrKl~~g~~klwgn~~tVdWAep~~e~ded~ms~ 258 (506)
T KOG0117|consen 179 EEILEEMKKVTEGVVDVIVYPSPDDKTKNRGFAFVEYESHRAAAMARRKLMPGKIKLWGNAITVDWAEPEEEPDEDTMSK 258 (506)
T ss_pred HHHHHHHHhhCCCeeEEEEecCccccccccceEEEEeecchhHHHHHhhccCCceeecCCcceeeccCcccCCChhhhhh
Confidence 100 000000011111 113333444444444444445556
Q ss_pred ccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEeEEEeecC
Q 024012 185 TKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVDVAKT 264 (274)
Q Consensus 185 ~~~lfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~d~~~g~~rG~aFV~F~s~~~A~~Ai~~l~g~~l~G~~l~V~~a~~ 264 (274)
.+.|||+||+.++|||.|+++|++||.|++|+.++| ||||+|.++++|.+|++.|||+.|+|..|.|.+|+|
T Consensus 259 VKvLYVRNL~~~tTeE~lk~~F~~~G~veRVkk~rD--------YaFVHf~eR~davkAm~~~ngkeldG~~iEvtLAKP 330 (506)
T KOG0117|consen 259 VKVLYVRNLMESTTEETLKKLFNEFGKVERVKKPRD--------YAFVHFAEREDAVKAMKETNGKELDGSPIEVTLAKP 330 (506)
T ss_pred eeeeeeeccchhhhHHHHHHHHHhccceEEeecccc--------eeEEeecchHHHHHHHHHhcCceecCceEEEEecCC
Confidence 789999999999999999999999999999999977 999999999999999999999999999999999999
Q ss_pred CCCCCCC
Q 024012 265 TPKYSRG 271 (274)
Q Consensus 265 ~~~~~~~ 271 (274)
..+....
T Consensus 331 ~~k~k~~ 337 (506)
T KOG0117|consen 331 VDKKKKE 337 (506)
T ss_pred hhhhccc
Confidence 8655443
No 3
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.97 E-value=1.9e-30 Score=232.50 Aligned_cols=227 Identities=20% Similarity=0.286 Sum_probs=156.3
Q ss_pred cee-eeecChhhHHHHhcCCceeEeccCCCCCccccCCCcCCCCCCCCCCCCCCceeeeecCCCcceeEEecCCCCCCCC
Q 024012 12 FGF-CCNVDEETSRELARLPGVLTVRPDPDYNSVKKDYSCLDIQMSNPWNSQIGTTLLFPLGTTKHWLVRMDKPGVGVVT 90 (274)
Q Consensus 12 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~s~~lf~vgnl~~~~~~~~~p~~~~~t 90 (274)
|+| .+.-.++|..++..+.+...- ......+ +. ...........|| |+|||. +++
T Consensus 47 ~afV~f~~~~~A~~Ai~~l~g~~l~--g~~i~v~---~a-------~~~~~~~~~~~l~-v~~l~~-----------~~~ 102 (352)
T TIGR01661 47 YGFVNYVRPEDAEKAVNSLNGLRLQ--NKTIKVS---YA-------RPSSDSIKGANLY-VSGLPK-----------TMT 102 (352)
T ss_pred EEEEEECcHHHHHHHHhhcccEEEC--CeeEEEE---ee-------cccccccccceEE-ECCccc-----------cCC
Confidence 666 555567788888877775431 1010000 00 0011122345799 999999 699
Q ss_pred HHHHHHHHHHHHHhhhCCcccceEEEe-cCCCCCCeEEeeeCCHHHHHHHH-CCCCceee--------cCCCCCC-CCCC
Q 024012 91 KAQMVDRYAQILTKVLGNEKDAQMCIY-HVSWQSNFGFCCELDDECAQELT-GVPGVLSV--------QPDENFG-SENK 159 (274)
Q Consensus 91 ~~~L~~~F~~~l~~~~G~v~~v~i~~~-~~g~srgfgFV~f~~~e~a~~a~-~~~g~~~~--------~~~~~~~-~~~~ 159 (274)
+++|+++|.++ |.|..++++.+ .++.++|||||+|.+.++|++|+ .|+|.... ....... ...+
T Consensus 103 ~~~l~~~f~~~-----G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~A~~ai~~l~g~~~~g~~~~i~v~~a~~~~~~~~~ 177 (352)
T TIGR01661 103 QHELESIFSPF-----GQIITSRILSDNVTGLSKGVGFIRFDKRDEADRAIKTLNGTTPSGCTEPITVKFANNPSSSNSK 177 (352)
T ss_pred HHHHHHHHhcc-----CCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEEECCCCCcCCch
Confidence 99999999977 99999998874 46889999999999999996666 56764211 1100000 0000
Q ss_pred CCCC-----------C-CCC--------------------------------------------CCCCCCCCC-------
Q 024012 160 DYGG-----------N-NLQ--------------------------------------------NSMVPSDSS------- 176 (274)
Q Consensus 160 ~~~~-----------~-~~~--------------------------------------------~~~~~~~~~------- 176 (274)
.... . ... ....+....
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (352)
T TIGR01661 178 GLLSQLEAVQNPQTTRVPLSTILTAAGIGPMHHAAARFRPSAGDFTAVLAHQQQQHAVAQQHAAQRASPPATDGQTAGLA 257 (352)
T ss_pred hcCchhhcccCcccCCCCccccccccCCCCccCcccccccCcchhhhhhhhhhhhcccccccccccCCCccccccccccc
Confidence 0000 0 000 000000000
Q ss_pred ---CCCCCCccccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeC
Q 024012 177 ---EASPTQIKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIIN 253 (274)
Q Consensus 177 ---~~~~~~~~~~~lfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~d~~~g~~rG~aFV~F~s~~~A~~Ai~~l~g~~l~ 253 (274)
........+.+|||+|||+.+++++|+++|++||.|++++|++|+.+|.+||||||+|.+.++|.+|+..|||..|+
T Consensus 258 ~~~~~~~~~~~~~~lfV~NL~~~~~e~~L~~~F~~fG~v~~v~i~~d~~t~~skG~aFV~F~~~~~A~~Ai~~lnG~~~~ 337 (352)
T TIGR01661 258 AGAQIAASDGAGYCIFVYNLSPDTDETVLWQLFGPFGAVQNVKIIRDLTTNQCKGYGFVSMTNYDEAAMAILSLNGYTLG 337 (352)
T ss_pred cCCCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeEcCCCCCccceEEEEECCHHHHHHHHHHhCCCEEC
Confidence 00011223457999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CEEeEEEeecCCCC
Q 024012 254 GWMIVVDVAKTTPK 267 (274)
Q Consensus 254 G~~l~V~~a~~~~~ 267 (274)
||.|+|+|+.++.+
T Consensus 338 gr~i~V~~~~~~~~ 351 (352)
T TIGR01661 338 NRVLQVSFKTNKAY 351 (352)
T ss_pred CeEEEEEEccCCCC
Confidence 99999999998764
No 4
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.97 E-value=1.3e-30 Score=242.43 Aligned_cols=178 Identities=20% Similarity=0.255 Sum_probs=141.8
Q ss_pred CceeeeecCCCcceeEEecCCCCCCCCHHHHHHHHHHHHHhhhCCcccceEEEe-cCCCCCCeEEeeeCCHHHHHHHH-C
Q 024012 64 GTTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIY-HVSWQSNFGFCCELDDECAQELT-G 141 (274)
Q Consensus 64 ~s~~lf~vgnl~~~~~~~~~p~~~~~t~~~L~~~F~~~l~~~~G~v~~v~i~~~-~~g~srgfgFV~f~~~e~a~~a~-~ 141 (274)
....|| |||||+ ++|+++|+++|.++ |.|.+|+|+.+ .+|+++|||||+|.+.++|++|+ .
T Consensus 106 ~~~rLf-VGnLp~-----------~~tEe~Lr~lF~~f-----G~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~ 168 (612)
T TIGR01645 106 IMCRVY-VGSISF-----------ELREDTIRRAFDPF-----GPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQ 168 (612)
T ss_pred CCCEEE-EcCCCC-----------CCCHHHHHHHHHcc-----CCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHh
Confidence 345799 999999 79999999999977 99999998874 68999999999999999997776 5
Q ss_pred CCCceee-cCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEec
Q 024012 142 VPGVLSV-QPDENFGSENKDYGGNNLQNSMVPSDSSEASPTQIKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMD 220 (274)
Q Consensus 142 ~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~d 220 (274)
|||.... +........+.. . ...............++|||+|||+++++++|+++|+.||.|++++|.+|
T Consensus 169 lnG~~i~GR~IkV~rp~~~p-------~--a~~~~~~~~~~~~~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D 239 (612)
T TIGR01645 169 MNGQMLGGRNIKVGRPSNMP-------Q--AQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARA 239 (612)
T ss_pred cCCeEEecceeeeccccccc-------c--cccccccccccccccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEec
Confidence 7886432 211111000000 0 00000001112224579999999999999999999999999999999999
Q ss_pred CCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEeEEEeecCCCC
Q 024012 221 KISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVDVAKTTPK 267 (274)
Q Consensus 221 ~~~g~~rG~aFV~F~s~~~A~~Ai~~l~g~~l~G~~l~V~~a~~~~~ 267 (274)
+.+|++||||||+|.+.++|.+|++.|||..++|+.|+|.++.+++.
T Consensus 240 ~~tgksKGfGFVeFe~~e~A~kAI~amNg~elgGr~LrV~kAi~pP~ 286 (612)
T TIGR01645 240 PTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCVTPPD 286 (612)
T ss_pred CCCCCcCCeEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEecCCCcc
Confidence 98999999999999999999999999999999999999999997654
No 5
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.97 E-value=3.1e-29 Score=232.23 Aligned_cols=178 Identities=22% Similarity=0.300 Sum_probs=141.4
Q ss_pred CCceeeeecCCCcceeEEecCCCCCCCCHHHHHHHHHHHHHhhhCCcccceEEEe-cCCCCCCeEEeeeCCHHHHHHHHC
Q 024012 63 IGTTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIY-HVSWQSNFGFCCELDDECAQELTG 141 (274)
Q Consensus 63 ~~s~~lf~vgnl~~~~~~~~~p~~~~~t~~~L~~~F~~~l~~~~G~v~~v~i~~~-~~g~srgfgFV~f~~~e~a~~a~~ 141 (274)
-..++|| |+|||. ++|+++|+++|.++ |.|.+|+++.+ .+|.++|||||+|.+.++|++|++
T Consensus 87 ~~~~~l~-V~nlp~-----------~~~~~~l~~~F~~~-----G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~ 149 (457)
T TIGR01622 87 RDDRTVF-VLQLAL-----------KARERDLYEFFSKV-----GKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALA 149 (457)
T ss_pred cCCcEEE-EeCCCC-----------CCCHHHHHHHHHhc-----CCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH
Confidence 3467899 999999 69999999999988 99999998874 678999999999999999999999
Q ss_pred CCCceeecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecC
Q 024012 142 VPGVLSVQPDENFGSENKDYGGNNLQNSMVPSDSSEASPTQIKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDK 221 (274)
Q Consensus 142 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~d~ 221 (274)
++|............. ...... . .. .............+|||+|||..+|+++|+++|++||.|..|.++++.
T Consensus 150 l~g~~~~g~~i~v~~~-~~~~~~-~-~~----~~~~~~~~~p~~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~ 222 (457)
T TIGR01622 150 LTGQMLLGRPIIVQSS-QAEKNR-A-AK----AATHQPGDIPNFLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDP 222 (457)
T ss_pred hCCCEECCeeeEEeec-chhhhh-h-hh----cccccCCCCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcC
Confidence 9986432111110000 000000 0 00 000001111236899999999999999999999999999999999999
Q ss_pred CCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEeEEEeecC
Q 024012 222 ISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVDVAKT 264 (274)
Q Consensus 222 ~~g~~rG~aFV~F~s~~~A~~Ai~~l~g~~l~G~~l~V~~a~~ 264 (274)
.+|.++|||||+|.+.++|.+|+..|||..|.|++|+|.||..
T Consensus 223 ~~g~~~g~afV~f~~~e~A~~A~~~l~g~~i~g~~i~v~~a~~ 265 (457)
T TIGR01622 223 ETGRSKGFGFIQFHDAEEAKEALEVMNGFELAGRPIKVGYAQD 265 (457)
T ss_pred CCCccceEEEEEECCHHHHHHHHHhcCCcEECCEEEEEEEccC
Confidence 8999999999999999999999999999999999999999874
No 6
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.97 E-value=7e-30 Score=209.36 Aligned_cols=173 Identities=20% Similarity=0.341 Sum_probs=137.2
Q ss_pred eeeeecCCCcceeEEecCCCCCCCCHHHHHHHHHHHHHhhhCCcccceEEE-ecCCCCCCeEEeeeCCHHHH-HHHHCCC
Q 024012 66 TLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCI-YHVSWQSNFGFCCELDDECA-QELTGVP 143 (274)
Q Consensus 66 ~~lf~vgnl~~~~~~~~~p~~~~~t~~~L~~~F~~~l~~~~G~v~~v~i~~-~~~g~srgfgFV~f~~~e~a-~~a~~~~ 143 (274)
-++| ||+|.. .++-|+|++.|..+ |+|.+++|++ ..|++|||||||.|.+.++| .|+..||
T Consensus 63 fhvf-vgdls~-----------eI~~e~lr~aF~pF-----GevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~Mn 125 (321)
T KOG0148|consen 63 FHVF-VGDLSP-----------EIDNEKLREAFAPF-----GEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMN 125 (321)
T ss_pred eeEE-ehhcch-----------hcchHHHHHHhccc-----cccccceEeecccCCcccceeEEeccchHHHHHHHHHhC
Confidence 4577 999999 79999999999955 9999999888 47899999999999999999 6666789
Q ss_pred CceeecCCCCCCCCCCCCCCCCCCC-CCCCCCC-CCCCCCCccccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecC
Q 024012 144 GVLSVQPDENFGSENKDYGGNNLQN-SMVPSDS-SEASPTQIKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDK 221 (274)
Q Consensus 144 g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~lfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~d~ 221 (274)
|....++..... .+.+.... ...+... ..-......+++|||+|++..+||++|++.|++||+|.+|+|..+
T Consensus 126 GqWlG~R~IRTN-----WATRKp~e~n~~~ltfdeV~NQssp~NtsVY~G~I~~~lte~~mr~~Fs~fG~I~EVRvFk~- 199 (321)
T KOG0148|consen 126 GQWLGRRTIRTN-----WATRKPSEMNGKPLTFDEVYNQSSPDNTSVYVGNIASGLTEDLMRQTFSPFGPIQEVRVFKD- 199 (321)
T ss_pred Ceeeccceeecc-----ccccCccccCCCCccHHHHhccCCCCCceEEeCCcCccccHHHHHHhcccCCcceEEEEecc-
Confidence 986543322111 11100000 0000000 001234456899999999999999999999999999999999987
Q ss_pred CCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEeEEEeecCCC
Q 024012 222 ISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVDVAKTTP 266 (274)
Q Consensus 222 ~~g~~rG~aFV~F~s~~~A~~Ai~~l~g~~l~G~~l~V~~a~~~~ 266 (274)
+|||||.|++.|+|.+||..|||++++|+.|++.|.+...
T Consensus 200 -----qGYaFVrF~tkEaAahAIv~mNntei~G~~VkCsWGKe~~ 239 (321)
T KOG0148|consen 200 -----QGYAFVRFETKEAAAHAIVQMNNTEIGGQLVRCSWGKEGD 239 (321)
T ss_pred -----cceEEEEecchhhHHHHHHHhcCceeCceEEEEeccccCC
Confidence 6899999999999999999999999999999999998764
No 7
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.97 E-value=9.5e-29 Score=229.62 Aligned_cols=218 Identities=21% Similarity=0.271 Sum_probs=151.4
Q ss_pred cChhhHHHHhcCCceeEeccCCCCCccccCCCcCCCCCCCCCC-CCCCceeeeecCCCcceeEEecCCCCCCCCHHHHHH
Q 024012 18 VDEETSRELARLPGVLTVRPDPDYNSVKKDYSCLDIQMSNPWN-SQIGTTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVD 96 (274)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~-~~~~s~~lf~vgnl~~~~~~~~~p~~~~~t~~~L~~ 96 (274)
.+|+|.+++..+.+......... +-|+ .++..|.. ++...++|| |||||. ++|+++|++
T Consensus 18 ~~~~a~~a~~~~~gy~~~~~~g~-----r~~g---~Pp~~~~~~~p~~~~~lF-VgnLp~-----------~~tEd~L~~ 77 (578)
T TIGR01648 18 PDEAALKALLERTGYTLVQENGQ-----RKYG---GPPPGWSGVQPGRGCEVF-VGKIPR-----------DLYEDELVP 77 (578)
T ss_pred ccHHHHHHHHHhhCccccccCCc-----ccCC---CCCCcccCCCCCCCCEEE-eCCCCC-----------CCCHHHHHH
Confidence 57788888877776655433211 2222 12222322 344567899 999999 699999999
Q ss_pred HHHHHHHhhhCCcccceEEEecCCCCCCeEEeeeCCHHHHHHHHC-CCCceee--cCCC---------CCC----C----
Q 024012 97 RYAQILTKVLGNEKDAQMCIYHVSWQSNFGFCCELDDECAQELTG-VPGVLSV--QPDE---------NFG----S---- 156 (274)
Q Consensus 97 ~F~~~l~~~~G~v~~v~i~~~~~g~srgfgFV~f~~~e~a~~a~~-~~g~~~~--~~~~---------~~~----~---- 156 (274)
+|.++ |.|.+++|+++.+|++||||||+|.+.++|++|++ |++.... +... .+. .
T Consensus 78 ~F~~~-----G~I~~vrl~~D~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l~V~~S~~~~rLFVgNLP~~~Te 152 (578)
T TIGR01648 78 LFEKA-----GPIYELRLMMDFSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLLGVCISVDNCRLFVGGIPKNKKR 152 (578)
T ss_pred HHHhh-----CCEEEEEEEECCCCCccceEEEEeCCHHHHHHHHHHcCCCeecCCccccccccccCceeEeecCCcchhh
Confidence 99988 99999999999899999999999999999966664 5653210 0000 000 0
Q ss_pred ---------------------------CCCCC-------------------------CCCCCCCCCCCCCCCCCCCCCcc
Q 024012 157 ---------------------------ENKDY-------------------------GGNNLQNSMVPSDSSEASPTQIK 184 (274)
Q Consensus 157 ---------------------------~~~~~-------------------------~~~~~~~~~~~~~~~~~~~~~~~ 184 (274)
.++.+ .+..+......+...........
T Consensus 153 eeL~eeFskv~egvv~vIv~~~~~~kgKnRGFAFVeF~s~edAa~AirkL~~gki~l~Gr~I~VdwA~p~~~~d~~~~~~ 232 (578)
T TIGR01648 153 EEILEEFSKVTEGVVDVIVYHSAADKKKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHVIAVDWAEPEEEVDEDVMAK 232 (578)
T ss_pred HHHHHHhhcccCCceEEEEeccccccCccCceEEEEcCCHHHHHHHHHHhhccceEecCceEEEEeeccccccccccccc
Confidence 00000 00000000000011111111233
Q ss_pred ccEEEEcCCCCCCCHHHHHHHHhcc--CCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEeEEEee
Q 024012 185 TKKLFVTGLSFYTSEKTLRAAFEGF--GELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVDVA 262 (274)
Q Consensus 185 ~~~lfV~nLp~~~te~~L~~~F~~f--G~i~~v~i~~d~~~g~~rG~aFV~F~s~~~A~~Ai~~l~g~~l~G~~l~V~~a 262 (274)
.++|||+|||.++++++|+++|++| |.|++|++++ +||||+|.+.++|++|++.|||..|+|+.|+|+||
T Consensus 233 ~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~~r--------gfAFVeF~s~e~A~kAi~~lnG~~i~Gr~I~V~~A 304 (578)
T TIGR01648 233 VKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKKIR--------DYAFVHFEDREDAVKAMDELNGKELEGSEIEVTLA 304 (578)
T ss_pred ccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEeec--------CeEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEc
Confidence 5789999999999999999999999 9999998763 49999999999999999999999999999999999
Q ss_pred cCCCCC
Q 024012 263 KTTPKY 268 (274)
Q Consensus 263 ~~~~~~ 268 (274)
++..+.
T Consensus 305 kp~~~~ 310 (578)
T TIGR01648 305 KPVDKK 310 (578)
T ss_pred cCCCcc
Confidence 987543
No 8
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.96 E-value=3.2e-29 Score=224.60 Aligned_cols=166 Identities=23% Similarity=0.388 Sum_probs=137.2
Q ss_pred ceeeeecCCCcceeEEecCCCCCCCCHHHHHHHHHHHHHhhhCCcccceEEEe-cCCCCCCeEEeeeCCHHHHHHHH-CC
Q 024012 65 TTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIY-HVSWQSNFGFCCELDDECAQELT-GV 142 (274)
Q Consensus 65 s~~lf~vgnl~~~~~~~~~p~~~~~t~~~L~~~F~~~l~~~~G~v~~v~i~~~-~~g~srgfgFV~f~~~e~a~~a~-~~ 142 (274)
.++|| |||||+ ++|+++|+++|.++ |+|.+|+++.+ .+|+++|||||+|.+.++|++|+ .|
T Consensus 3 ~~~l~-V~nLp~-----------~~~e~~l~~~F~~~-----G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l 65 (352)
T TIGR01661 3 KTNLI-VNYLPQ-----------TMTQEEIRSLFTSI-----GEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSL 65 (352)
T ss_pred CcEEE-EeCCCC-----------CCCHHHHHHHHHcc-----CCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhc
Confidence 46789 999999 79999999999988 99999999884 67999999999999999997776 47
Q ss_pred CCceeecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCC
Q 024012 143 PGVLSVQPDENFGSENKDYGGNNLQNSMVPSDSSEASPTQIKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKI 222 (274)
Q Consensus 143 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~d~~ 222 (274)
+|.... +..+..... ..........+|||+|||..+++++|+++|++||.|..++++.+..
T Consensus 66 ~g~~l~--------------g~~i~v~~a-----~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~ 126 (352)
T TIGR01661 66 NGLRLQ--------------NKTIKVSYA-----RPSSDSIKGANLYVSGLPKTMTQHELESIFSPFGQIITSRILSDNV 126 (352)
T ss_pred ccEEEC--------------CeeEEEEee-----cccccccccceEEECCccccCCHHHHHHHHhccCCEEEEEEEecCC
Confidence 875321 000100000 0011122366899999999999999999999999999999999988
Q ss_pred CCCcceEEEEEeCCHHHHHHHHHHhCCceeCC--EEeEEEeecCCC
Q 024012 223 SKRSKGYAFIEYTTEEAASAALKEMNGKIING--WMIVVDVAKTTP 266 (274)
Q Consensus 223 ~g~~rG~aFV~F~s~~~A~~Ai~~l~g~~l~G--~~l~V~~a~~~~ 266 (274)
++.++|||||+|.+.++|++|++.|||..+.| ++|.|.|+..+.
T Consensus 127 ~~~~~g~~fv~f~~~~~A~~ai~~l~g~~~~g~~~~i~v~~a~~~~ 172 (352)
T TIGR01661 127 TGLSKGVGFIRFDKRDEADRAIKTLNGTTPSGCTEPITVKFANNPS 172 (352)
T ss_pred CCCcCcEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEEECCCCC
Confidence 89999999999999999999999999999987 678999987654
No 9
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.96 E-value=3.1e-29 Score=217.14 Aligned_cols=183 Identities=23% Similarity=0.317 Sum_probs=142.5
Q ss_pred CCCCCCCCCCceeeeecCCCcceeEEecCCCCCCCCHHHHHHHHHHHHHhhhCCcccceEEE-ecCCCCCCeEEeeeCCH
Q 024012 55 MSNPWNSQIGTTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCI-YHVSWQSNFGFCCELDD 133 (274)
Q Consensus 55 ~~~~~~~~~~s~~lf~vgnl~~~~~~~~~p~~~~~t~~~L~~~F~~~l~~~~G~v~~v~i~~-~~~g~srgfgFV~f~~~ 133 (274)
.....+++...-.|| ||-+|. ..||.||+++|+++ |.|.+|.+++ +.++.++|||||.|.+.
T Consensus 24 ~~~~d~~d~~~vKlf-VgqIpr-----------t~sE~dlr~lFe~y-----g~V~einl~kDk~t~~s~gcCFv~~~tr 86 (510)
T KOG0144|consen 24 LDHTDNPDGSAVKLF-VGQIPR-----------TASEKDLRELFEKY-----GNVYEINLIKDKSTGQSKGCCFVKYYTR 86 (510)
T ss_pred CCCCCCCCchhhhhe-eccCCc-----------cccHHHHHHHHHHh-----CceeEEEeecccccCcccceEEEEeccH
Confidence 344555677777899 999999 79999999999999 9999999877 57899999999999999
Q ss_pred HHHHHHHCCCCceeecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccEEEEcCCCCCCCHHHHHHHHhccCCeE
Q 024012 134 ECAQELTGVPGVLSVQPDENFGSENKDYGGNNLQNSMVPSDSSEASPTQIKTKKLFVTGLSFYTSEKTLRAAFEGFGELV 213 (274)
Q Consensus 134 e~a~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~te~~L~~~F~~fG~i~ 213 (274)
++|.+|+..-......+........+...+. ...-...++|||+-|+..+||.+++++|++||.|+
T Consensus 87 k~a~~a~~Alhn~ktlpG~~~pvqvk~Ad~E--------------~er~~~e~KLFvg~lsK~~te~evr~iFs~fG~Ie 152 (510)
T KOG0144|consen 87 KEADEAINALHNQKTLPGMHHPVQVKYADGE--------------RERIVEERKLFVGMLSKQCTENEVREIFSRFGHIE 152 (510)
T ss_pred HHHHHHHHHhhcccccCCCCcceeecccchh--------------hhccccchhhhhhhccccccHHHHHHHHHhhCccc
Confidence 9996665421111111111111000111000 00113478999999999999999999999999999
Q ss_pred EEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCce-eCC--EEeEEEeecCCCCCC
Q 024012 214 EVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKI-ING--WMIVVDVAKTTPKYS 269 (274)
Q Consensus 214 ~v~i~~d~~~g~~rG~aFV~F~s~~~A~~Ai~~l~g~~-l~G--~~l~V~~a~~~~~~~ 269 (274)
++.|++|. .+.+||||||.|.+.+.|..||+.|||.. +.| .+|.|.||++++.+.
T Consensus 153 d~~ilrd~-~~~sRGcaFV~fstke~A~~Aika~ng~~tmeGcs~PLVVkFADtqkdk~ 210 (510)
T KOG0144|consen 153 DCYILRDP-DGLSRGCAFVKFSTKEMAVAAIKALNGTQTMEGCSQPLVVKFADTQKDKD 210 (510)
T ss_pred hhhheecc-cccccceeEEEEehHHHHHHHHHhhccceeeccCCCceEEEecccCCCch
Confidence 99999998 89999999999999999999999999965 555 689999999986543
No 10
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.96 E-value=4e-27 Score=220.88 Aligned_cols=191 Identities=18% Similarity=0.261 Sum_probs=137.4
Q ss_pred CCceeeeecCCCcceeEEecCCCCCCCCHHHHHHHHHHHHHhhhCCc-ccce-EEEecCCCCCCeEEeeeCCHHHHHHHH
Q 024012 63 IGTTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNE-KDAQ-MCIYHVSWQSNFGFCCELDDECAQELT 140 (274)
Q Consensus 63 ~~s~~lf~vgnl~~~~~~~~~p~~~~~t~~~L~~~F~~~l~~~~G~v-~~v~-i~~~~~g~srgfgFV~f~~~e~a~~a~ 140 (274)
...++|| |||||+ ++|+++|.++|.+++....... .+.. |.....+.++|||||+|.+.++|..|+
T Consensus 173 ~~~r~ly-VgnLp~-----------~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~~~~kg~afVeF~~~e~A~~Al 240 (509)
T TIGR01642 173 RQARRLY-VGGIPP-----------EFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNINKEKNFAFLEFRTVEEATFAM 240 (509)
T ss_pred ccccEEE-EeCCCC-----------CCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEECCCCCEEEEEeCCHHHHhhhh
Confidence 4567899 999999 6999999999999755542211 1122 333345678999999999999999999
Q ss_pred CCCCcee------ecCCCCCCCCCCCCCCCCCCC--CCCCCC--CCCCCCCCccccEEEEcCCCCCCCHHHHHHHHhccC
Q 024012 141 GVPGVLS------VQPDENFGSENKDYGGNNLQN--SMVPSD--SSEASPTQIKTKKLFVTGLSFYTSEKTLRAAFEGFG 210 (274)
Q Consensus 141 ~~~g~~~------~~~~~~~~~~~~~~~~~~~~~--~~~~~~--~~~~~~~~~~~~~lfV~nLp~~~te~~L~~~F~~fG 210 (274)
+|+|+.. +.....+.............. ...... ...........++|||+|||..+++++|+++|++||
T Consensus 241 ~l~g~~~~g~~l~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G 320 (509)
T TIGR01642 241 ALDSIIYSNVFLKIRRPHDYIPVPQITPEVSQKNPDDNAKNVEKLVNSTTVLDSKDRIYIGNLPLYLGEDQIKELLESFG 320 (509)
T ss_pred cCCCeEeeCceeEecCccccCCccccCCCCCCCCCcccccccccccccccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcC
Confidence 9998632 211111110000000000000 000000 001111223468999999999999999999999999
Q ss_pred CeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEeEEEeecCC
Q 024012 211 ELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVDVAKTT 265 (274)
Q Consensus 211 ~i~~v~i~~d~~~g~~rG~aFV~F~s~~~A~~Ai~~l~g~~l~G~~l~V~~a~~~ 265 (274)
.|..+.|+.+..+|.++|||||+|.+.++|..|+..|||..|+|+.|.|.+|...
T Consensus 321 ~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a~~~ 375 (509)
T TIGR01642 321 DLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRACVG 375 (509)
T ss_pred CeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECccC
Confidence 9999999999989999999999999999999999999999999999999998754
No 11
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.96 E-value=6.1e-28 Score=228.87 Aligned_cols=184 Identities=18% Similarity=0.269 Sum_probs=139.7
Q ss_pred CCceeeeecCCCcceeEEecCCCCCCCCHHHHHHHHHHHHHhhhCCcccceEEEecCCCCCCeEEeeeCCHHHHHHHH-C
Q 024012 63 IGTTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIYHVSWQSNFGFCCELDDECAQELT-G 141 (274)
Q Consensus 63 ~~s~~lf~vgnl~~~~~~~~~p~~~~~t~~~L~~~F~~~l~~~~G~v~~v~i~~~~~g~srgfgFV~f~~~e~a~~a~-~ 141 (274)
...++|| |+|||. ++|+++|+++|.++ |.|.+++++.+.+|.++|||||+|.+.++|.+|+ .
T Consensus 176 ~~~~~l~-V~nl~~-----------~~tee~L~~~F~~f-----G~i~~~~i~~~~~g~~~G~afV~F~~~e~A~~Av~~ 238 (562)
T TIGR01628 176 KKFTNLY-VKNLDP-----------SVNEDKLRELFAKF-----GEITSAAVMKDGSGRSRGFAFVNFEKHEDAAKAVEE 238 (562)
T ss_pred cCCCeEE-EeCCCC-----------cCCHHHHHHHHHhc-----CCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHH
Confidence 3456788 999999 69999999999977 9999999999889999999999999999996655 5
Q ss_pred CCCceee-----cCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccEEEEcCCCCCCCHHHHHHHHhccCCeEEEE
Q 024012 142 VPGVLSV-----QPDENFGSENKDYGGNNLQNSMVPSDSSEASPTQIKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVK 216 (274)
Q Consensus 142 ~~g~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~te~~L~~~F~~fG~i~~v~ 216 (274)
++|.... ..........+.......... ...............+|||+|||+.+|+++|+++|++||.|.+++
T Consensus 239 l~g~~i~~~~~g~~l~v~~a~~k~er~~~~~~~--~~~~~~~~~~~~~~~~l~V~nl~~~~~~~~L~~~F~~~G~i~~~~ 316 (562)
T TIGR01628 239 MNGKKIGLAKEGKKLYVGRAQKRAEREAELRRK--FEELQQERKMKAQGVNLYVKNLDDTVTDEKLRELFSECGEITSAK 316 (562)
T ss_pred hCCcEecccccceeeEeecccChhhhHHHHHhh--HHhhhhhhhcccCCCEEEEeCCCCccCHHHHHHHHHhcCCeEEEE
Confidence 6775432 000000000000000000000 000000011123467899999999999999999999999999999
Q ss_pred EEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEeEEEeecCCC
Q 024012 217 IIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVDVAKTTP 266 (274)
Q Consensus 217 i~~d~~~g~~rG~aFV~F~s~~~A~~Ai~~l~g~~l~G~~l~V~~a~~~~ 266 (274)
++.| .+|.++|||||+|.+.++|.+|+..|||+.++|++|.|.+|+++.
T Consensus 317 i~~d-~~g~~~g~gfV~f~~~~~A~~A~~~~~g~~~~gk~l~V~~a~~k~ 365 (562)
T TIGR01628 317 VMLD-EKGVSRGFGFVCFSNPEEANRAVTEMHGRMLGGKPLYVALAQRKE 365 (562)
T ss_pred EEEC-CCCCcCCeEEEEeCCHHHHHHHHHHhcCCeeCCceeEEEeccCcH
Confidence 9999 489999999999999999999999999999999999999998764
No 12
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.95 E-value=1.6e-26 Score=219.20 Aligned_cols=171 Identities=26% Similarity=0.423 Sum_probs=138.3
Q ss_pred CceeeeecCCCcceeEEecCCCCCCCCHHHHHHHHHHHHHhhhCCcccceEEEecCCCCCCeEEeeeCCHHHHHHHH-CC
Q 024012 64 GTTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIYHVSWQSNFGFCCELDDECAQELT-GV 142 (274)
Q Consensus 64 ~s~~lf~vgnl~~~~~~~~~p~~~~~t~~~L~~~F~~~l~~~~G~v~~v~i~~~~~g~srgfgFV~f~~~e~a~~a~-~~ 142 (274)
...+|| |+|||. ++++++|+++|+++ |.|.+|++..+.+|+++|||||+|.+.++|++|+ ++
T Consensus 87 ~~~~vf-V~nLp~-----------~~~~~~L~~~F~~~-----G~i~~~~i~~~~~g~skg~afV~F~~~e~A~~Ai~~l 149 (562)
T TIGR01628 87 GVGNIF-VKNLDK-----------SVDNKALFDTFSKF-----GNILSCKVATDENGKSRGYGFVHFEKEESAKAAIQKV 149 (562)
T ss_pred CCCceE-EcCCCc-----------cCCHHHHHHHHHhc-----CCcceeEeeecCCCCcccEEEEEECCHHHHHHHHHHh
Confidence 345689 999999 79999999999977 9999999998889999999999999999996665 66
Q ss_pred CCceeecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCC
Q 024012 143 PGVLSVQPDENFGSENKDYGGNNLQNSMVPSDSSEASPTQIKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKI 222 (274)
Q Consensus 143 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~d~~ 222 (274)
+|...... ....+....... . ........++|||+|||.++|+++|+++|++||.|.++.+..+.
T Consensus 150 ng~~~~~~--------~i~v~~~~~~~~----~--~~~~~~~~~~l~V~nl~~~~tee~L~~~F~~fG~i~~~~i~~~~- 214 (562)
T TIGR01628 150 NGMLLNDK--------EVYVGRFIKKHE----R--EAAPLKKFTNLYVKNLDPSVNEDKLRELFAKFGEITSAAVMKDG- 214 (562)
T ss_pred cccEecCc--------eEEEeccccccc----c--ccccccCCCeEEEeCCCCcCCHHHHHHHHHhcCCEEEEEEEECC-
Confidence 77642111 000000000000 0 01122335789999999999999999999999999999999986
Q ss_pred CCCcceEEEEEeCCHHHHHHHHHHhCCceeC----CEEeEEEeecCCC
Q 024012 223 SKRSKGYAFIEYTTEEAASAALKEMNGKIIN----GWMIVVDVAKTTP 266 (274)
Q Consensus 223 ~g~~rG~aFV~F~s~~~A~~Ai~~l~g~~l~----G~~l~V~~a~~~~ 266 (274)
+|.++|||||+|.+.++|.+|++.|+|..+. |+.|.|.+++.+.
T Consensus 215 ~g~~~G~afV~F~~~e~A~~Av~~l~g~~i~~~~~g~~l~v~~a~~k~ 262 (562)
T TIGR01628 215 SGRSRGFAFVNFEKHEDAAKAVEEMNGKKIGLAKEGKKLYVGRAQKRA 262 (562)
T ss_pred CCCcccEEEEEECCHHHHHHHHHHhCCcEecccccceeeEeecccChh
Confidence 7899999999999999999999999999999 9999999987764
No 13
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.94 E-value=1.2e-26 Score=189.49 Aligned_cols=165 Identities=24% Similarity=0.391 Sum_probs=144.1
Q ss_pred eeeeecCCCcceeEEecCCCCCCCCHHHHHHHHHHHHHhhhCCcccceEEE-ecCCCCCCeEEeeeCCHHHHHHHHC-CC
Q 024012 66 TLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCI-YHVSWQSNFGFCCELDDECAQELTG-VP 143 (274)
Q Consensus 66 ~~lf~vgnl~~~~~~~~~p~~~~~t~~~L~~~F~~~l~~~~G~v~~v~i~~-~~~g~srgfgFV~f~~~e~a~~a~~-~~ 143 (274)
+.|+ |.-||- .+|+++++.+|..+ |+|.+|++++ +-+|+|-|||||.|.++++|++|+. +|
T Consensus 42 TNLI-vNYLPQ-----------~MTqdE~rSLF~Si-----GeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlN 104 (360)
T KOG0145|consen 42 TNLI-VNYLPQ-----------NMTQDELRSLFGSI-----GEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLN 104 (360)
T ss_pred ceee-eeeccc-----------ccCHHHHHHHhhcc-----cceeeeeeeeccccccccccceeeecChHHHHHHHhhhc
Confidence 4466 888888 69999999999988 9999999888 5679999999999999999977763 34
Q ss_pred CceeecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCC
Q 024012 144 GVLSVQPDENFGSENKDYGGNNLQNSMVPSDSSEASPTQIKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKIS 223 (274)
Q Consensus 144 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~d~~~ 223 (274)
| ..++.+.++.....++........|||.+||..+|..+|+++|++||.|..-+|+.|..+
T Consensus 105 G-------------------LrLQ~KTIKVSyARPSs~~Ik~aNLYvSGlPktMtqkelE~iFs~fGrIItSRiL~dqvt 165 (360)
T KOG0145|consen 105 G-------------------LRLQNKTIKVSYARPSSDSIKDANLYVSGLPKTMTQKELEQIFSPFGRIITSRILVDQVT 165 (360)
T ss_pred c-------------------eeeccceEEEEeccCChhhhcccceEEecCCccchHHHHHHHHHHhhhhhhhhhhhhccc
Confidence 4 335555666666666667777899999999999999999999999999999999999999
Q ss_pred CCcceEEEEEeCCHHHHHHHHHHhCCceeCC--EEeEEEeecCCC
Q 024012 224 KRSKGYAFIEYTTEEAASAALKEMNGKIING--WMIVVDVAKTTP 266 (274)
Q Consensus 224 g~~rG~aFV~F~s~~~A~~Ai~~l~g~~l~G--~~l~V~~a~~~~ 266 (274)
|.+||.|||.|+.+.+|+.||+.|||.+-.| .+|.|.||....
T Consensus 166 g~srGVgFiRFDKr~EAe~AIk~lNG~~P~g~tepItVKFannPs 210 (360)
T KOG0145|consen 166 GLSRGVGFIRFDKRIEAEEAIKGLNGQKPSGCTEPITVKFANNPS 210 (360)
T ss_pred ceecceeEEEecchhHHHHHHHhccCCCCCCCCCCeEEEecCCcc
Confidence 9999999999999999999999999999877 579999998653
No 14
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.94 E-value=8.9e-27 Score=180.96 Aligned_cols=169 Identities=24% Similarity=0.302 Sum_probs=137.2
Q ss_pred ceeeeecCCCcceeEEecCCCCCCCCHHHHHHHHHHHHHhhhCCcccceEEEe-cCCCCCCeEEeeeCCHHHHHHHHCC-
Q 024012 65 TTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIY-HVSWQSNFGFCCELDDECAQELTGV- 142 (274)
Q Consensus 65 s~~lf~vgnl~~~~~~~~~p~~~~~t~~~L~~~F~~~l~~~~G~v~~v~i~~~-~~g~srgfgFV~f~~~e~a~~a~~~- 142 (274)
..++| +|||+. .+|++.|.++|.|+ |+|.+++|.++ -+...+|||||+|.++|+|+.|+++
T Consensus 9 d~tiy-vgnld~-----------kvs~~~l~EL~iqa-----gpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikil 71 (203)
T KOG0131|consen 9 DATLY-VGNLDE-----------KVSEELLYELFIQA-----GPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKIL 71 (203)
T ss_pred CceEE-EecCCH-----------HHHHHHHHHHHHhc-----CceeeeecchhhhcccccceeEEEEechhhhHHHHHHH
Confidence 45688 999999 69999999999999 99999999984 4566999999999999999887765
Q ss_pred CCceeecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccEEEEcCCCCCCCHHHHHHHHhccCCeEEE-EEEecC
Q 024012 143 PGVLSVQPDENFGSENKDYGGNNLQNSMVPSDSSEASPTQIKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEV-KIIMDK 221 (274)
Q Consensus 143 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~te~~L~~~F~~fG~i~~v-~i~~d~ 221 (274)
|++ +. .++.+...... ........+.+|||+||.+.++|..|.+.|+.||.+.+. +|++|.
T Consensus 72 n~V-kL-------------YgrpIrv~kas----~~~~nl~vganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~ 133 (203)
T KOG0131|consen 72 NMV-KL-------------YGRPIRVNKAS----AHQKNLDVGANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDP 133 (203)
T ss_pred HHH-Hh-------------cCceeEEEecc----cccccccccccccccccCcchhHHHHHHHHHhccccccCCcccccc
Confidence 422 11 11111111111 001112235899999999999999999999999998764 899999
Q ss_pred CCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEeEEEeecCCCCC
Q 024012 222 ISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVDVAKTTPKY 268 (274)
Q Consensus 222 ~~g~~rG~aFV~F~s~~~A~~Ai~~l~g~~l~G~~l~V~~a~~~~~~ 268 (274)
.||.++|||||.|++.+.+.+|+..|||..+..+++.|+||..+...
T Consensus 134 ~tg~~~~~g~i~~~sfeasd~ai~s~ngq~l~nr~itv~ya~k~~~k 180 (203)
T KOG0131|consen 134 DTGNPKGFGFINYASFEASDAAIGSMNGQYLCNRPITVSYAFKKDTK 180 (203)
T ss_pred cCCCCCCCeEEechhHHHHHHHHHHhccchhcCCceEEEEEEecCCC
Confidence 99999999999999999999999999999999999999999987543
No 15
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.93 E-value=5.6e-24 Score=199.66 Aligned_cols=185 Identities=17% Similarity=0.210 Sum_probs=131.1
Q ss_pred CceeeeecCCCcceeEEecCCCCCCCCHHHHHHHHHHHHHhhhCCcccceEEEe-cCCCCCCeEEeeeCCHHHHHHHH-C
Q 024012 64 GTTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIY-HVSWQSNFGFCCELDDECAQELT-G 141 (274)
Q Consensus 64 ~s~~lf~vgnl~~~~~~~~~p~~~~~t~~~L~~~F~~~l~~~~G~v~~v~i~~~-~~g~srgfgFV~f~~~e~a~~a~-~ 141 (274)
..++|| |||||+ .+|+++|+++|.++ |.|..+.++.+ .+|.++|||||+|.+.++|..|+ .
T Consensus 294 ~~~~l~-v~nlp~-----------~~~~~~l~~~f~~~-----G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~ 356 (509)
T TIGR01642 294 SKDRIY-IGNLPL-----------YLGEDQIKELLESF-----GDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAA 356 (509)
T ss_pred CCCEEE-EeCCCC-----------CCCHHHHHHHHHhc-----CCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHH
Confidence 456788 999999 69999999999987 99999998774 68999999999999999996665 6
Q ss_pred CCCcee------ecCCCCCCCCCCC-CCCCCCCCCCCCCC--CCCCCCCCccccEEEEcCCCCCC----------CHHHH
Q 024012 142 VPGVLS------VQPDENFGSENKD-YGGNNLQNSMVPSD--SSEASPTQIKTKKLFVTGLSFYT----------SEKTL 202 (274)
Q Consensus 142 ~~g~~~------~~~~~~~~~~~~~-~~~~~~~~~~~~~~--~~~~~~~~~~~~~lfV~nLp~~~----------te~~L 202 (274)
|+|... +............ .............. .........++.+|+|.|+...- ..++|
T Consensus 357 l~g~~~~~~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~v~~l~N~~~~~~l~~d~~~~~~~edl 436 (509)
T TIGR01642 357 LNGKDTGDNKLHVQRACVGANQATIDTSNGMAPVTLLAKALSQSILQIGGKPTKVVQLTNLVTGDDLMDDEEYEEIYEDV 436 (509)
T ss_pred cCCCEECCeEEEEEECccCCCCCCccccccccccccccccchhhhccccCCCceEEEeccCCchhHhcCcchHHHHHHHH
Confidence 787532 2111110000000 00000000000000 00001122357889999996421 23689
Q ss_pred HHHHhccCCeEEEEEEecC---CCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEeEEEeecCC
Q 024012 203 RAAFEGFGELVEVKIIMDK---ISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVDVAKTT 265 (274)
Q Consensus 203 ~~~F~~fG~i~~v~i~~d~---~~g~~rG~aFV~F~s~~~A~~Ai~~l~g~~l~G~~l~V~~a~~~ 265 (274)
+++|++||.|+.|.|+++. .++.++|+|||+|.+.++|++|+..|||..|+|+.|.|.|....
T Consensus 437 ~~~f~~~G~v~~v~i~~~~~~~~~~~~~G~~fV~F~~~e~A~~A~~~lnGr~~~gr~v~~~~~~~~ 502 (509)
T TIGR01642 437 KTEFSKYGPLINIVIPRPNGDRNSTPGVGKVFLEYADVRSAEKAMEGMNGRKFNDRVVVAAFYGED 502 (509)
T ss_pred HHHHHhcCCeeEEEeeccCcCCCcCCCcceEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEeCHH
Confidence 9999999999999998753 34567899999999999999999999999999999999997653
No 16
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.93 E-value=5.9e-25 Score=195.54 Aligned_cols=185 Identities=24% Similarity=0.353 Sum_probs=136.7
Q ss_pred eeeeecCCCcceeEEecCCCCCCCCHHHHHHHHHHHHHhhhCCcccceEEE-ecCCCCCCeEEeeeCCHHHHHHHHCC-C
Q 024012 66 TLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCI-YHVSWQSNFGFCCELDDECAQELTGV-P 143 (274)
Q Consensus 66 ~~lf~vgnl~~~~~~~~~p~~~~~t~~~L~~~F~~~l~~~~G~v~~v~i~~-~~~g~srgfgFV~f~~~e~a~~a~~~-~ 143 (274)
-||| |++||+ ++|.++|.++|++. |+|..+.+.. ..++.+||||||+|+-.|+++.|++. .
T Consensus 6 ~Tlf-V~~lp~-----------~~~~~qL~e~FS~v-----GPik~~~vVt~~gs~~~RGfgfVtFam~ED~qrA~~e~~ 68 (678)
T KOG0127|consen 6 ATLF-VSRLPF-----------SSTGEQLEEFFSYV-----GPIKHAVVVTNKGSSEKRGFGFVTFAMEEDVQRALAETE 68 (678)
T ss_pred ceEE-EecCCC-----------ccchhHHHHhhhcc-----cCcceeEEecCCCcccccCccceeeehHhHHHHHHHHhh
Confidence 5799 999999 79999999999988 9999999887 45678999999999999999666543 3
Q ss_pred C-----c-eeecCCCCCCCCCCCCCCCCCCCCCCCCCCCCC--CCCCccccEEEEcCCCCCCCHHHHHHHHhccCCeEEE
Q 024012 144 G-----V-LSVQPDENFGSENKDYGGNNLQNSMVPSDSSEA--SPTQIKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEV 215 (274)
Q Consensus 144 g-----~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~lfV~nLp~~~te~~L~~~F~~fG~i~~v 215 (274)
+ - +.+.+............+.. .....+...... .....+..+|.|+|||+.+.+.+|+.+|+.||.|.+|
T Consensus 69 ~~kf~Gr~l~v~~A~~R~r~e~~~~~e~-~~veK~~~q~~~~k~~v~~~k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei 147 (678)
T KOG0127|consen 69 QSKFEGRILNVDPAKKRARSEEVEKGEN-KAVEKPIEQKRPTKAKVDLPKWRLIIRNLPFKCKKPDLKNVFSNFGKVVEI 147 (678)
T ss_pred cCcccceecccccccccccchhcccccc-hhhhcccccCCcchhhccCccceEEeecCCcccCcHHHHHHHhhcceEEEE
Confidence 2 1 11111111110000000000 000001111111 1123347899999999999999999999999999999
Q ss_pred EEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEeEEEeecCCCCCC
Q 024012 216 KIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVDVAKTTPKYS 269 (274)
Q Consensus 216 ~i~~d~~~g~~rG~aFV~F~s~~~A~~Ai~~l~g~~l~G~~l~V~~a~~~~~~~ 269 (274)
.|++... |+-.|||||.|....+|..|++.+||..|+||+|-|+||-++....
T Consensus 148 ~IP~k~d-gklcGFaFV~fk~~~dA~~Al~~~N~~~i~gR~VAVDWAV~Kd~ye 200 (678)
T KOG0127|consen 148 VIPRKKD-GKLCGFAFVQFKEKKDAEKALEFFNGNKIDGRPVAVDWAVDKDTYE 200 (678)
T ss_pred EcccCCC-CCccceEEEEEeeHHHHHHHHHhccCceecCceeEEeeeccccccc
Confidence 9998874 4445999999999999999999999999999999999999886543
No 17
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.93 E-value=1.6e-24 Score=201.43 Aligned_cols=167 Identities=17% Similarity=0.184 Sum_probs=124.8
Q ss_pred ceeeeecCCCcceeEEecCCCCCCCCHHHHHHHHHHHHHhhhCCcccceEEEecCCCCCCeEEeeeCCHHHHHHHHC---
Q 024012 65 TTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIYHVSWQSNFGFCCELDDECAQELTG--- 141 (274)
Q Consensus 65 s~~lf~vgnl~~~~~~~~~p~~~~~t~~~L~~~F~~~l~~~~G~v~~v~i~~~~~g~srgfgFV~f~~~e~a~~a~~--- 141 (274)
|++|| |||||. ++|+++|+++|.++ |.|.+++++. ++|||||+|.+.++|++|++
T Consensus 2 s~vv~-V~nLp~-----------~~te~~L~~~f~~f-----G~V~~v~i~~-----~k~~afVef~~~e~A~~Ai~~~~ 59 (481)
T TIGR01649 2 SPVVH-VRNLPQ-----------DVVEADLVEALIPF-----GPVSYVMMLP-----GKRQALVEFEDEESAKACVNFAT 59 (481)
T ss_pred ccEEE-EcCCCC-----------CCCHHHHHHHHHhc-----CCeeEEEEEC-----CCCEEEEEeCchHHHHHHHHHhh
Confidence 67899 999999 79999999999977 9999999883 47999999999999988875
Q ss_pred CCCc-eeecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEec
Q 024012 142 VPGV-LSVQPDENFGSENKDYGGNNLQNSMVPSDSSEASPTQIKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMD 220 (274)
Q Consensus 142 ~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~d 220 (274)
+++. +..++........+.... . ..............+|||+||++.+|+++|+++|++||.|.+|.|.++
T Consensus 60 ~~~~~l~g~~l~v~~s~~~~~~~-----~---~~~~~~~~~~~~~~~v~v~nl~~~vt~~~L~~~F~~~G~V~~v~i~~~ 131 (481)
T TIGR01649 60 SVPIYIRGQPAFFNYSTSQEIKR-----D---GNSDFDSAGPNKVLRVIVENPMYPITLDVLYQIFNPYGKVLRIVTFTK 131 (481)
T ss_pred cCCceEcCeEEEEEecCCccccc-----C---CCCcccCCCCCceEEEEEcCCCCCCCHHHHHHHHhccCCEEEEEEEec
Confidence 3432 221111111000000000 0 000000111123457999999999999999999999999999999876
Q ss_pred CCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCC--EEeEEEeecCC
Q 024012 221 KISKRSKGYAFIEYTTEEAASAALKEMNGKIING--WMIVVDVAKTT 265 (274)
Q Consensus 221 ~~~g~~rG~aFV~F~s~~~A~~Ai~~l~g~~l~G--~~l~V~~a~~~ 265 (274)
. .+|+|||+|.+.++|.+|++.|||..|.| +.|+|+|+++.
T Consensus 132 ~----~~~~afVef~~~~~A~~A~~~Lng~~i~~~~~~l~v~~sk~~ 174 (481)
T TIGR01649 132 N----NVFQALVEFESVNSAQHAKAALNGADIYNGCCTLKIEYAKPT 174 (481)
T ss_pred C----CceEEEEEECCHHHHHHHHHHhcCCcccCCceEEEEEEecCC
Confidence 4 24799999999999999999999999964 68999999874
No 18
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.92 E-value=3.8e-24 Score=198.86 Aligned_cols=180 Identities=16% Similarity=0.177 Sum_probs=128.4
Q ss_pred CceeeeecCCCcceeEEecCCCCCCCCHHHHHHHHHHHHHhhhCCcccceEEEecCCCCCCeEEeeeCCHHHHHHHH-CC
Q 024012 64 GTTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIYHVSWQSNFGFCCELDDECAQELT-GV 142 (274)
Q Consensus 64 ~s~~lf~vgnl~~~~~~~~~p~~~~~t~~~L~~~F~~~l~~~~G~v~~v~i~~~~~g~srgfgFV~f~~~e~a~~a~-~~ 142 (274)
.+.+|| |+|||.+ .+|+++|+++|.++ |.|.+|+++.+ .+|||||+|.+.++|.+|+ .|
T Consensus 274 ~~~~l~-v~nL~~~----------~vt~~~L~~lF~~y-----G~V~~vki~~~----~~g~afV~f~~~~~A~~Ai~~l 333 (481)
T TIGR01649 274 PGSVLM-VSGLHQE----------KVNCDRLFNLFCVY-----GNVERVKFMKN----KKETALIEMADPYQAQLALTHL 333 (481)
T ss_pred CCCEEE-EeCCCCC----------CCCHHHHHHHHHhc-----CCeEEEEEEeC----CCCEEEEEECCHHHHHHHHHHh
Confidence 456788 9999973 49999999999977 99999998864 3799999999999996666 47
Q ss_pred CCce-eecCCCCCCCCC------CC---CCCC-----CCCCC---CCCCCCCCCCCCCccccEEEEcCCCCCCCHHHHHH
Q 024012 143 PGVL-SVQPDENFGSEN------KD---YGGN-----NLQNS---MVPSDSSEASPTQIKTKKLFVTGLSFYTSEKTLRA 204 (274)
Q Consensus 143 ~g~~-~~~~~~~~~~~~------~~---~~~~-----~~~~~---~~~~~~~~~~~~~~~~~~lfV~nLp~~~te~~L~~ 204 (274)
+|.. ..++........ +. ..+. ..... ..............++.+|||+|||.++++++|++
T Consensus 334 ng~~l~g~~l~v~~s~~~~~~~~~~~~~~~~~~~~~d~~~~~~~r~~~~~~~~~~~~~~ps~~L~v~NLp~~~tee~L~~ 413 (481)
T TIGR01649 334 NGVKLFGKPLRVCPSKQQNVQPPREGQLDDGLTSYKDYSSSRNHRFKKPGSANKNNIQPPSATLHLSNIPLSVSEEDLKE 413 (481)
T ss_pred CCCEECCceEEEEEcccccccCCCCCcCcCCCcccccccCCccccCCCcccccccccCCCCcEEEEecCCCCCCHHHHHH
Confidence 8742 111111100000 00 0000 00000 00000000011124578999999999999999999
Q ss_pred HHhccCC--eEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEE------eEEEeecCC
Q 024012 205 AFEGFGE--LVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWM------IVVDVAKTT 265 (274)
Q Consensus 205 ~F~~fG~--i~~v~i~~d~~~g~~rG~aFV~F~s~~~A~~Ai~~l~g~~l~G~~------l~V~~a~~~ 265 (274)
+|++||. |..+++.... + .++|+|||+|.+.++|.+||..|||+.|.|+. |+|+||+++
T Consensus 414 lF~~~G~~~i~~ik~~~~~-~-~~~~~gfVeF~~~e~A~~Al~~ln~~~l~~~~~~~~~~lkv~fs~~~ 480 (481)
T TIGR01649 414 LFAENGVHKVKKFKFFPKD-N-ERSKMGLLEWESVEDAVEALIALNHHQLNEPNGSAPYHLKVSFSTSR 480 (481)
T ss_pred HHHhcCCccceEEEEecCC-C-CcceeEEEEcCCHHHHHHHHHHhcCCccCCCCCCccceEEEEeccCC
Confidence 9999998 8888887554 3 36899999999999999999999999999985 999999864
No 19
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.92 E-value=2.4e-23 Score=170.16 Aligned_cols=227 Identities=20% Similarity=0.323 Sum_probs=159.2
Q ss_pred cceeeeecCh-hhHHHHhcCCceeEeccCCCCCccccCCCcCCCCCCCCCCCCCCceeeeecCCCcceeEEecCCCCCCC
Q 024012 11 HFGFCCNVDE-ETSRELARLPGVLTVRPDPDYNSVKKDYSCLDIQMSNPWNSQIGTTLLFPLGTTKHWLVRMDKPGVGVV 89 (274)
Q Consensus 11 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~s~~lf~vgnl~~~~~~~~~p~~~~~ 89 (274)
-|||-+-+++ ||.++++.+.|..--.. . .+-.|. ..++..++.-.|+ |..||. ++
T Consensus 84 GYGFVNYv~p~DAe~AintlNGLrLQ~K----T-IKVSyA-------RPSs~~Ik~aNLY-vSGlPk-----------tM 139 (360)
T KOG0145|consen 84 GYGFVNYVRPKDAEKAINTLNGLRLQNK----T-IKVSYA-------RPSSDSIKDANLY-VSGLPK-----------TM 139 (360)
T ss_pred ccceeeecChHHHHHHHhhhcceeeccc----e-EEEEec-------cCChhhhcccceE-EecCCc-----------cc
Confidence 3788666654 46777777776542100 0 001111 1122334556688 999999 79
Q ss_pred CHHHHHHHHHHHHHhhhCCcccceEEE-ecCCCCCCeEEeeeCCHHHH-HHHHCCCCcee--------ecCCC-------
Q 024012 90 TKAQMVDRYAQILTKVLGNEKDAQMCI-YHVSWQSNFGFCCELDDECA-QELTGVPGVLS--------VQPDE------- 152 (274)
Q Consensus 90 t~~~L~~~F~~~l~~~~G~v~~v~i~~-~~~g~srgfgFV~f~~~e~a-~~a~~~~g~~~--------~~~~~------- 152 (274)
|..||.++|.++ |.|...||.. .-+|.+||-|||.|...++| +++..+||..- +....
T Consensus 140 tqkelE~iFs~f-----GrIItSRiL~dqvtg~srGVgFiRFDKr~EAe~AIk~lNG~~P~g~tepItVKFannPsq~t~ 214 (360)
T KOG0145|consen 140 TQKELEQIFSPF-----GRIITSRILVDQVTGLSRGVGFIRFDKRIEAEEAIKGLNGQKPSGCTEPITVKFANNPSQKTN 214 (360)
T ss_pred hHHHHHHHHHHh-----hhhhhhhhhhhcccceecceeEEEecchhHHHHHHHhccCCCCCCCCCCeEEEecCCcccccc
Confidence 999999999977 9998888776 45799999999999999999 66667787511 10000
Q ss_pred ------CCCCCCCCCCCCC---C--------------CCCCCCCCCC--------CCCCCCccccEEEEcCCCCCCCHHH
Q 024012 153 ------NFGSENKDYGGNN---L--------------QNSMVPSDSS--------EASPTQIKTKKLFVTGLSFYTSEKT 201 (274)
Q Consensus 153 ------~~~~~~~~~~~~~---~--------------~~~~~~~~~~--------~~~~~~~~~~~lfV~nLp~~~te~~ 201 (274)
.+.+..+.+.+.. . .....|.... ..+.....+.+|||-||.++++|.-
T Consensus 215 ~a~ls~ly~sp~rr~~Gp~hh~~~r~r~~~~~~~~~~~~rfsP~~~d~m~~l~~~~lp~~~~~g~ciFvYNLspd~de~~ 294 (360)
T KOG0145|consen 215 QALLSQLYQSPARRYGGPMHHQAQRFRLDNLLNPHAAQARFSPMTIDGMSGLAGVNLPGGPGGGWCIFVYNLSPDADESI 294 (360)
T ss_pred hhhhHHhhcCccccCCCcccchhhhhccccccchhhhhccCCCccccccceeeeeccCCCCCCeeEEEEEecCCCchHhH
Confidence 0011111111100 0 0000000000 1122234478999999999999999
Q ss_pred HHHHHhccCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEeEEEeecCCC
Q 024012 202 LRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVDVAKTTP 266 (274)
Q Consensus 202 L~~~F~~fG~i~~v~i~~d~~~g~~rG~aFV~F~s~~~A~~Ai~~l~g~~l~G~~l~V~~a~~~~ 266 (274)
|.++|++||.|..|+|++|..|++.||||||.+.+.++|..||..|||..+++|.|+|+|...+.
T Consensus 295 LWQlFgpFGAv~nVKvirD~ttnkCKGfgFVtMtNYdEAamAi~sLNGy~lg~rvLQVsFKtnk~ 359 (360)
T KOG0145|consen 295 LWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTNKA 359 (360)
T ss_pred HHHHhCcccceeeEEEEecCCcccccceeEEEecchHHHHHHHHHhcCccccceEEEEEEecCCC
Confidence 99999999999999999999889999999999999999999999999999999999999977653
No 20
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.90 E-value=1.6e-22 Score=180.07 Aligned_cols=183 Identities=21% Similarity=0.326 Sum_probs=133.7
Q ss_pred eeeecCCCcceeEEecCCCCCCCCHHHHHHHHHHHHHhhhCCcccceEEEecCCCCCCeEEeeeCCHHHHHHHH-CCCCc
Q 024012 67 LLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIYHVSWQSNFGFCCELDDECAQELT-GVPGV 145 (274)
Q Consensus 67 ~lf~vgnl~~~~~~~~~p~~~~~t~~~L~~~F~~~l~~~~G~v~~v~i~~~~~g~srgfgFV~f~~~e~a~~a~-~~~g~ 145 (274)
.|+ |.|||+ .+.+.+|..+|+++ |.|.+|.|.+...|+-.|||||+|....+|..|+ .+||.
T Consensus 119 rLI-IRNLPf-----------~~k~~dLk~vFs~~-----G~V~Ei~IP~k~dgklcGFaFV~fk~~~dA~~Al~~~N~~ 181 (678)
T KOG0127|consen 119 RLI-IRNLPF-----------KCKKPDLKNVFSNF-----GKVVEIVIPRKKDGKLCGFAFVQFKEKKDAEKALEFFNGN 181 (678)
T ss_pred eEE-eecCCc-----------ccCcHHHHHHHhhc-----ceEEEEEcccCCCCCccceEEEEEeeHHHHHHHHHhccCc
Confidence 467 899998 69999999999988 9999999999889998899999999999995555 45753
Q ss_pred -eeecCCC--------CCCC------------------------CCCCCC---------CCC-CC---------------
Q 024012 146 -LSVQPDE--------NFGS------------------------ENKDYG---------GNN-LQ--------------- 167 (274)
Q Consensus 146 -~~~~~~~--------~~~~------------------------~~~~~~---------~~~-~~--------------- 167 (274)
+..|+.. .+.. ...... ... ..
T Consensus 182 ~i~gR~VAVDWAV~Kd~ye~ta~~~~~s~Kk~~~eEed~e~~~d~~~~~~~Ed~e~d~edeEe~D~~se~~ee~~~~Eee 261 (678)
T KOG0127|consen 182 KIDGRPVAVDWAVDKDTYEDTAHEEKQSLKKAVKEEEDKEADEDDGKDFDEEDGEEDSEDEEETDGNSEAFEEGEESEEE 261 (678)
T ss_pred eecCceeEEeeecccccccccchhhhhhhhhccchhhhcccccccccccchhcccccccccccccccchhhhcccccccc
Confidence 1222110 0000 000000 000 00
Q ss_pred ---CCCCC-CCCC------CC---CCCCccccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCcceEEEEEe
Q 024012 168 ---NSMVP-SDSS------EA---SPTQIKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEY 234 (274)
Q Consensus 168 ---~~~~~-~~~~------~~---~~~~~~~~~lfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~d~~~g~~rG~aFV~F 234 (274)
..... +... .. ........+|||+|||+++||++|.++|++||+|..+.|+.++.|+.++|.|||.|
T Consensus 262 ~~~vDd~e~S~~~~~~k~~q~k~~~en~~~~~tVFvRNL~fD~tEEel~~~fskFG~v~ya~iV~~k~T~~skGtAFv~F 341 (678)
T KOG0127|consen 262 EDDVDDEESSGKKESDKKAQNKTTRENITEGKTVFVRNLPFDTTEEELKEHFSKFGEVKYAIIVKDKDTGHSKGTAFVKF 341 (678)
T ss_pred ccccccccccccCcccchhccccccccccccceEEEecCCccccHHHHHHHHHhhccceeEEEEeccCCCCcccceEEEe
Confidence 00000 0000 00 11112347999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHh-----CC-ceeCCEEeEEEeecCCC
Q 024012 235 TTEEAASAALKEM-----NG-KIINGWMIVVDVAKTTP 266 (274)
Q Consensus 235 ~s~~~A~~Ai~~l-----~g-~~l~G~~l~V~~a~~~~ 266 (274)
.+..+|.+||..- .| ..|.||.|.|..|-++.
T Consensus 342 kt~~~~~~ci~~Aspa~e~g~~ll~GR~Lkv~~Av~Rk 379 (678)
T KOG0127|consen 342 KTQIAAQNCIEAASPASEDGSVLLDGRLLKVTLAVTRK 379 (678)
T ss_pred ccHHHHHHHHHhcCccCCCceEEEeccEEeeeeccchH
Confidence 9999999999876 34 77899999999988753
No 21
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.89 E-value=1.1e-21 Score=181.75 Aligned_cols=181 Identities=18% Similarity=0.274 Sum_probs=127.6
Q ss_pred CceeeeecCCCcceeEEecCCCCCCCCHHHHHHHHHHHHHhhhCCcccceEEEe-cCCCCCCeEEeeeCCHHHHHHHH-C
Q 024012 64 GTTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIY-HVSWQSNFGFCCELDDECAQELT-G 141 (274)
Q Consensus 64 ~s~~lf~vgnl~~~~~~~~~p~~~~~t~~~L~~~F~~~l~~~~G~v~~v~i~~~-~~g~srgfgFV~f~~~e~a~~a~-~ 141 (274)
.+.+|| |+|||. .+|+++|+++|.++ |.|..|++..+ .+|+++|||||+|.+.++|.+|+ .
T Consensus 185 ~~~~l~-v~nl~~-----------~~te~~l~~~f~~~-----G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~A~~~ 247 (457)
T TIGR01622 185 NFLKLY-VGNLHF-----------NITEQELRQIFEPF-----GDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKEALEV 247 (457)
T ss_pred CCCEEE-EcCCCC-----------CCCHHHHHHHHHhc-----CCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHh
Confidence 367899 999999 69999999999977 99999998875 45799999999999999996665 5
Q ss_pred CCCce------eecCCCCCCCC-----------CCCCC-----------------------CCCC---------------
Q 024012 142 VPGVL------SVQPDENFGSE-----------NKDYG-----------------------GNNL--------------- 166 (274)
Q Consensus 142 ~~g~~------~~~~~~~~~~~-----------~~~~~-----------------------~~~~--------------- 166 (274)
|+|.. .+......... ..... +...
T Consensus 248 l~g~~i~g~~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (457)
T TIGR01622 248 MNGFELAGRPIKVGYAQDSTYLLDAANTFEDIDKQQQMGKNLNTEEREQLMEKLDRDDGDGGLLIPGTGSKIALMQKLQR 327 (457)
T ss_pred cCCcEECCEEEEEEEccCCCccccchhhhccccccccCCcCCCccchHHHHHhhccCCCCccccCCCccchhhhhccccc
Confidence 78742 22111000000 00000 0000
Q ss_pred ---CCCCCC-------------CCCCCCCCCCccccEEEEcCCCCCCC----------HHHHHHHHhccCCeEEEEEEec
Q 024012 167 ---QNSMVP-------------SDSSEASPTQIKTKKLFVTGLSFYTS----------EKTLRAAFEGFGELVEVKIIMD 220 (274)
Q Consensus 167 ---~~~~~~-------------~~~~~~~~~~~~~~~lfV~nLp~~~t----------e~~L~~~F~~fG~i~~v~i~~d 220 (274)
.....+ ............+.+|+|.||....+ .++|++.|++||.|++|.|..
T Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~n~~~~~~~~~~~~~~~~~~dv~~e~~k~G~v~~v~v~~- 406 (457)
T TIGR01622 328 DGIIDPNIPSRYATGALAIMARNSFVPSTNNNLATTCLVLSNMFDPATEEEPNFDNEILDDVKEECSKYGGVVHIYVDT- 406 (457)
T ss_pred cccccccccccccccccccccCCCCCCcccCCCCCcEEEEecCCCCcccccchHHHHHHHHHHHHHHhcCCeeEEEEeC-
Confidence 000000 00000000224578899999955443 368999999999999998873
Q ss_pred CCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEeEEEeecCC
Q 024012 221 KISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVDVAKTT 265 (274)
Q Consensus 221 ~~~g~~rG~aFV~F~s~~~A~~Ai~~l~g~~l~G~~l~V~~a~~~ 265 (274)
..+.|++||+|.++++|.+|++.|||..++|+.|.+.+....
T Consensus 407 ---~~~~G~~fV~F~~~e~A~~A~~~lnGr~f~gr~i~~~~~~~~ 448 (457)
T TIGR01622 407 ---KNSAGKIYLKFSSVDAALAAFQALNGRYFGGKMITAAFVVND 448 (457)
T ss_pred ---CCCceeEEEEECCHHHHHHHHHHhcCcccCCeEEEEEEEcHH
Confidence 346799999999999999999999999999999999997653
No 22
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.89 E-value=2.6e-23 Score=172.39 Aligned_cols=147 Identities=24% Similarity=0.435 Sum_probs=122.8
Q ss_pred eeeecCCCcceeEEecCCCCCCCCHHHHHHHHHHHHHhhhCCcccceEEEecCCCCCCeEEeeeCCHHHHH-HHHCCCCc
Q 024012 67 LLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIYHVSWQSNFGFCCELDDECAQ-ELTGVPGV 145 (274)
Q Consensus 67 ~lf~vgnl~~~~~~~~~p~~~~~t~~~L~~~F~~~l~~~~G~v~~v~i~~~~~g~srgfgFV~f~~~e~a~-~a~~~~g~ 145 (274)
.|| |||||. .+++.+|+.+|+++ |+|.+|+|+ |.||||..++...|+ ++..|+|.
T Consensus 4 KLF-IGNLp~-----------~~~~~elr~lFe~y-----gkVlECDIv-------KNYgFVHiEdktaaedairNLhgY 59 (346)
T KOG0109|consen 4 KLF-IGNLPR-----------EATEQELRSLFEQY-----GKVLECDIV-------KNYGFVHIEDKTAAEDAIRNLHGY 59 (346)
T ss_pred chh-ccCCCc-----------ccchHHHHHHHHhh-----CceEeeeee-------cccceEEeecccccHHHHhhcccc
Confidence 589 999999 79999999999988 999999999 889999999999994 44457765
Q ss_pred eeecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCC
Q 024012 146 LSVQPDENFGSENKDYGGNNLQNSMVPSDSSEASPTQIKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKR 225 (274)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~d~~~g~ 225 (274)
.. .+..++... + ......+++|+|+||.+.++.++|+..|.+||+|.+++|++|
T Consensus 60 tL--------------hg~nInVea-----S--ksKsk~stkl~vgNis~tctn~ElRa~fe~ygpviecdivkd----- 113 (346)
T KOG0109|consen 60 TL--------------HGVNINVEA-----S--KSKSKASTKLHVGNISPTCTNQELRAKFEKYGPVIECDIVKD----- 113 (346)
T ss_pred ee--------------cceEEEEEe-----c--cccCCCccccccCCCCccccCHHHhhhhcccCCceeeeeecc-----
Confidence 32 000011111 1 111334789999999999999999999999999999999966
Q ss_pred cceEEEEEeCCHHHHHHHHHHhCCceeCCEEeEEEeecCCC
Q 024012 226 SKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVDVAKTTP 266 (274)
Q Consensus 226 ~rG~aFV~F~s~~~A~~Ai~~l~g~~l~G~~l~V~~a~~~~ 266 (274)
|+||.|+-.++|..|++.|+|++++|++++|.++.++-
T Consensus 114 ---y~fvh~d~~eda~~air~l~~~~~~gk~m~vq~stsrl 151 (346)
T KOG0109|consen 114 ---YAFVHFDRAEDAVEAIRGLDNTEFQGKRMHVQLSTSRL 151 (346)
T ss_pred ---eeEEEEeeccchHHHHhcccccccccceeeeeeecccc
Confidence 99999999999999999999999999999999988753
No 23
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.89 E-value=1.3e-22 Score=166.68 Aligned_cols=143 Identities=29% Similarity=0.460 Sum_probs=117.4
Q ss_pred ceeeeecCCCcceeEEecCCCCCCCCHHHHHHHHHHHHHhhhCCcccceEEEecCCCCCCeEEeeeCCHHHHHHHHCCCC
Q 024012 65 TTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIYHVSWQSNFGFCCELDDECAQELTGVPG 144 (274)
Q Consensus 65 s~~lf~vgnl~~~~~~~~~p~~~~~t~~~L~~~F~~~l~~~~G~v~~v~i~~~~~g~srgfgFV~f~~~e~a~~a~~~~g 144 (274)
-++|+ ||||.. +|||+=|..+|.|+ |.|+.++|+.+ . ++
T Consensus 6 prtly-vgnld~-----------~vte~~i~~lf~qi-----g~v~~~k~i~~--------------------e-~~--- 44 (321)
T KOG0148|consen 6 PRTLY-VGNLDS-----------TVTEDFIATLFNQI-----GSVTKTKVIFD--------------------E-LK--- 44 (321)
T ss_pred CceEE-eeccCh-----------hhHHHHHHHHHHhc-----cccccceeehh--------------------h-hc---
Confidence 36799 999999 79999999999999 99999998854 0 00
Q ss_pred ceeecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCC
Q 024012 145 VLSVQPDENFGSENKDYGGNNLQNSMVPSDSSEASPTQIKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISK 224 (274)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~d~~~g 224 (274)
+. .. ..+ .....+.......+||+.|...++-++|++.|.+||+|.+++|++|..|+
T Consensus 45 v~---------------wa------~~p--~nQsk~t~~~hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~ 101 (321)
T KOG0148|consen 45 VN---------------WA------TAP--GNQSKPTSNQHFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTG 101 (321)
T ss_pred cc---------------cc------cCc--ccCCCCccccceeEEehhcchhcchHHHHHHhccccccccceEeecccCC
Confidence 00 00 000 00011112225679999999999999999999999999999999999999
Q ss_pred CcceEEEEEeCCHHHHHHHHHHhCCceeCCEEeEEEeecCCCCCCCC
Q 024012 225 RSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVDVAKTTPKYSRG 271 (274)
Q Consensus 225 ~~rG~aFV~F~s~~~A~~Ai~~l~g~~l~G~~l~V~~a~~~~~~~~~ 271 (274)
+|||||||.|-+.++|+.||..|||.-|++|.|+..||.+++....+
T Consensus 102 KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IRTNWATRKp~e~n~ 148 (321)
T KOG0148|consen 102 KSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTIRTNWATRKPSEMNG 148 (321)
T ss_pred cccceeEEeccchHHHHHHHHHhCCeeeccceeeccccccCccccCC
Confidence 99999999999999999999999999999999999999999854443
No 24
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.88 E-value=5.5e-22 Score=176.76 Aligned_cols=144 Identities=23% Similarity=0.381 Sum_probs=119.4
Q ss_pred CCCHHHHHHHHHHHHHhhhCCcccceEEEecCCCCCCeEEeeeCCHHHHHHHH-CCCCce-eecCCCCCCCCCCCCCCCC
Q 024012 88 VVTKAQMVDRYAQILTKVLGNEKDAQMCIYHVSWQSNFGFCCELDDECAQELT-GVPGVL-SVQPDENFGSENKDYGGNN 165 (274)
Q Consensus 88 ~~t~~~L~~~F~~~l~~~~G~v~~v~i~~~~~g~srgfgFV~f~~~e~a~~a~-~~~g~~-~~~~~~~~~~~~~~~~~~~ 165 (274)
+||++.|.+.|..+ |++.+++++++. + |-|||||.|.++++|++|+ +||... ..++.++.
T Consensus 9 ~v~e~~l~~~f~~~-----~~v~s~rvc~d~-t-slgy~yvnf~~~~da~~A~~~~n~~~~~~~~~rim----------- 70 (369)
T KOG0123|consen 9 DVTEAMLFDKFSPA-----GPVLSIRVCRDA-T-SLGYAYVNFQQPADAERALDTMNFDVLKGKPIRIM----------- 70 (369)
T ss_pred cCChHHHHHHhccc-----CCceeEEEeecC-C-ccceEEEecCCHHHHHHHHHHcCCcccCCcEEEee-----------
Confidence 59999999999988 999999999988 6 9999999999999996665 445421 11111110
Q ss_pred CCCCCCCCCCCCCCCCCccccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHH
Q 024012 166 LQNSMVPSDSSEASPTQIKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALK 245 (274)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~d~~~g~~rG~aFV~F~s~~~A~~Ai~ 245 (274)
.+ . .....|||.||+++++..+|.++|+.||+|++|++.+|. .| ++|| ||+|++.++|.+|+.
T Consensus 71 ---------~s---~--rd~~~~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~-~g-~kg~-FV~f~~e~~a~~ai~ 133 (369)
T KOG0123|consen 71 ---------WS---Q--RDPSLVFIKNLDESIDNKSLYDTFSEFGNILSCKVATDE-NG-SKGY-FVQFESEESAKKAIE 133 (369)
T ss_pred ---------hh---c--cCCceeeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcC-CC-ceee-EEEeCCHHHHHHHHH
Confidence 00 0 001129999999999999999999999999999999997 45 9999 999999999999999
Q ss_pred HhCCceeCCEEeEEEeecCCC
Q 024012 246 EMNGKIINGWMIVVDVAKTTP 266 (274)
Q Consensus 246 ~l~g~~l~G~~l~V~~a~~~~ 266 (274)
.|||..+.|+.|.|....++.
T Consensus 134 ~~ng~ll~~kki~vg~~~~~~ 154 (369)
T KOG0123|consen 134 KLNGMLLNGKKIYVGLFERKE 154 (369)
T ss_pred HhcCcccCCCeeEEeeccchh
Confidence 999999999999999888764
No 25
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.88 E-value=2e-22 Score=173.92 Aligned_cols=171 Identities=23% Similarity=0.378 Sum_probs=137.4
Q ss_pred CceeeeecCCCcceeEEecCCCCCCCCHHHHHHHHHHHHHhhhCCcccceEEE-ecCCCCCCeEEeeeCCHHHHHHHHCC
Q 024012 64 GTTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCI-YHVSWQSNFGFCCELDDECAQELTGV 142 (274)
Q Consensus 64 ~s~~lf~vgnl~~~~~~~~~p~~~~~t~~~L~~~F~~~l~~~~G~v~~v~i~~-~~~g~srgfgFV~f~~~e~a~~a~~~ 142 (274)
.+..|| +|.|++ ++|+|.|+++|.++ |+|.+|.+++ ..++++|||+||+|++++...+++..
T Consensus 5 ~~~Klf-iGgisw-----------~ttee~Lr~yf~~~-----Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~~ 67 (311)
T KOG4205|consen 5 ESGKLF-IGGLSW-----------ETTEESLREYFSQF-----GEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLNA 67 (311)
T ss_pred CCccee-ecCcCc-----------cccHHHHHHHhccc-----CceeeEEEeccCCCCCcccccceecCCCcchheeecc
Confidence 456799 999999 79999999999877 9999999888 56799999999999999999777643
Q ss_pred -CCceeecCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCccccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEec
Q 024012 143 -PGVLSVQPDENFGSENKDYGGNNLQN-SMVPSDSSEASPTQIKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMD 220 (274)
Q Consensus 143 -~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~lfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~d 220 (274)
+..+. ++.+.. ...+..............++||++||.++++++++++|.+||.|..+.++.|
T Consensus 68 ~~h~~d---------------gr~ve~k~av~r~~~~~~~~~~~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d 132 (311)
T KOG4205|consen 68 RTHKLD---------------GRSVEPKRAVSREDQTKVGRHLRTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYD 132 (311)
T ss_pred cccccC---------------CccccceeccCcccccccccccceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeec
Confidence 22111 111111 1111111111122224779999999999999999999999999999999999
Q ss_pred CCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEeEEEeecCCCC
Q 024012 221 KISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVDVAKTTPK 267 (274)
Q Consensus 221 ~~~g~~rG~aFV~F~s~~~A~~Ai~~l~g~~l~G~~l~V~~a~~~~~ 267 (274)
..+.+++||+||.|.+++++.+++ ...-+.|+|+.+.|..|.|+..
T Consensus 133 ~~~~~~rgFgfv~~~~e~sVdkv~-~~~f~~~~gk~vevkrA~pk~~ 178 (311)
T KOG4205|consen 133 KTTSRPRGFGFVTFDSEDSVDKVT-LQKFHDFNGKKVEVKRAIPKEV 178 (311)
T ss_pred ccccccccceeeEeccccccceec-ccceeeecCceeeEeeccchhh
Confidence 999999999999999999999999 6688999999999999999753
No 26
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.87 E-value=2.4e-22 Score=171.34 Aligned_cols=175 Identities=21% Similarity=0.288 Sum_probs=137.9
Q ss_pred eeeecCCCcceeEEecCCCCCCCCHHHHHHHHHHHHHhhhCCcccceEEEe-cCCCCCCeEEeeeCCHHHHH-HHHCCCC
Q 024012 67 LLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIY-HVSWQSNFGFCCELDDECAQ-ELTGVPG 144 (274)
Q Consensus 67 ~lf~vgnl~~~~~~~~~p~~~~~t~~~L~~~F~~~l~~~~G~v~~v~i~~~-~~g~srgfgFV~f~~~e~a~-~a~~~~g 144 (274)
.++ ||.+.+ ++.|+.|+..|. .||+|+++.|..+ -|++++|||||+|+-+|.|+ +...|||
T Consensus 115 RvY-VGSIsf-----------El~EDtiR~AF~-----PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg 177 (544)
T KOG0124|consen 115 RVY-VGSISF-----------ELREDTIRRAFD-----PFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNG 177 (544)
T ss_pred hee-eeeeEE-----------EechHHHHhhcc-----CCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhcc
Confidence 366 999999 699999999999 5599999999985 57999999999999999995 5556898
Q ss_pred ceeecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCC
Q 024012 145 VLSVQPDENFGSENKDYGGNNLQNSMVPSDSSEASPTQIKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISK 224 (274)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~d~~~g 224 (274)
.+...+-. ..++..+.....+-..........-.+|||..++++++|+||+..|+.||+|+.|.+.+++.++
T Consensus 178 ~mlGGRNi--------KVgrPsNmpQAQpiID~vqeeAk~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~ 249 (544)
T KOG0124|consen 178 QMLGGRNI--------KVGRPSNMPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGR 249 (544)
T ss_pred ccccCccc--------cccCCCCCcccchHHHHHHHHHHhhheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCC
Confidence 76422111 1111000011000011112223345789999999999999999999999999999999999888
Q ss_pred CcceEEEEEeCCHHHHHHHHHHhCCceeCCEEeEEEeecCCC
Q 024012 225 RSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVDVAKTTP 266 (274)
Q Consensus 225 ~~rG~aFV~F~s~~~A~~Ai~~l~g~~l~G~~l~V~~a~~~~ 266 (274)
.+|||||++|.+..+...||..||-+.++|+.|+|..+-..+
T Consensus 250 ~HkGyGfiEy~n~qs~~eAiasMNlFDLGGQyLRVGk~vTPP 291 (544)
T KOG0124|consen 250 GHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCVTPP 291 (544)
T ss_pred CccceeeEEeccccchHHHhhhcchhhcccceEecccccCCC
Confidence 999999999999999999999999999999999998877654
No 27
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.86 E-value=1e-20 Score=147.83 Aligned_cols=85 Identities=42% Similarity=0.766 Sum_probs=80.9
Q ss_pred ccccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEeEEEee
Q 024012 183 IKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVDVA 262 (274)
Q Consensus 183 ~~~~~lfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~d~~~g~~rG~aFV~F~s~~~A~~Ai~~l~g~~l~G~~l~V~~a 262 (274)
...++|||+|||+.++|++|+++|++||.|.++.|+.|+.+++++|||||+|.+.++|++|++.|||..|+|++|+|+|+
T Consensus 32 ~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~a 111 (144)
T PLN03134 32 LMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPA 111 (144)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEeC
Confidence 34779999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCC
Q 024012 263 KTTPK 267 (274)
Q Consensus 263 ~~~~~ 267 (274)
++++.
T Consensus 112 ~~~~~ 116 (144)
T PLN03134 112 NDRPS 116 (144)
T ss_pred CcCCC
Confidence 87653
No 28
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.85 E-value=2.7e-21 Score=177.24 Aligned_cols=171 Identities=21% Similarity=0.303 Sum_probs=133.4
Q ss_pred eeecCCCcceeEEecCCCCCCCCHHHHHHHHHHHHHhhhCCcccceEEEecCCC----CCCeEEeeeCCHHHHHHHHC-C
Q 024012 68 LFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIYHVSW----QSNFGFCCELDDECAQELTG-V 142 (274)
Q Consensus 68 lf~vgnl~~~~~~~~~p~~~~~t~~~L~~~F~~~l~~~~G~v~~v~i~~~~~g~----srgfgFV~f~~~e~a~~a~~-~ 142 (274)
|| +.||++ ++|.++|...|... |.|.++.|.....+. |.|||||+|.++++|++|+. |
T Consensus 518 lf-vkNlnf-----------~Tt~e~l~~~F~k~-----G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~l 580 (725)
T KOG0110|consen 518 LF-VKNLNF-----------DTTLEDLEDLFSKQ-----GTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKAL 580 (725)
T ss_pred hh-hhcCCc-----------ccchhHHHHHHHhc-----CeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHh
Confidence 77 999999 79999999999976 999999988765553 66999999999999976654 5
Q ss_pred CCce-eecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecC
Q 024012 143 PGVL-SVQPDENFGSENKDYGGNNLQNSMVPSDSSEASPTQIKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDK 221 (274)
Q Consensus 143 ~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~d~ 221 (274)
+|.. ..+......+.++.... .. .........++|+|+|||+..+-.+++++|..||.+.+|+|+.-.
T Consensus 581 qgtvldGH~l~lk~S~~k~~~~---------~g--K~~~~kk~~tKIlVRNipFeAt~rEVr~LF~aFGqlksvRlPKK~ 649 (725)
T KOG0110|consen 581 QGTVLDGHKLELKISENKPAST---------VG--KKKSKKKKGTKILVRNIPFEATKREVRKLFTAFGQLKSVRLPKKI 649 (725)
T ss_pred cCceecCceEEEEeccCccccc---------cc--cccccccccceeeeeccchHHHHHHHHHHHhcccceeeeccchhh
Confidence 7642 21111111111111000 00 111222236799999999999999999999999999999999875
Q ss_pred CCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEeEEEeecCCC
Q 024012 222 ISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVDVAKTTP 266 (274)
Q Consensus 222 ~~g~~rG~aFV~F~s~~~A~~Ai~~l~g~~l~G~~l~V~~a~~~~ 266 (274)
..+.+||||||+|-++.+|.+|+.+|.++.|.||+|.++||+...
T Consensus 650 ~k~a~rGF~Fv~f~t~~ea~nA~~al~STHlyGRrLVLEwA~~d~ 694 (725)
T KOG0110|consen 650 GKGAHRGFGFVDFLTPREAKNAFDALGSTHLYGRRLVLEWAKSDN 694 (725)
T ss_pred cchhhccceeeeccCcHHHHHHHHhhcccceechhhheehhccch
Confidence 567789999999999999999999999999999999999998753
No 29
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.85 E-value=8.7e-22 Score=176.00 Aligned_cols=167 Identities=21% Similarity=0.320 Sum_probs=127.2
Q ss_pred CCCHHHHHHHHHHHHHhhhCCcccceEEE-ecCCCCCCeEEeeeCCHHHHHHHHCCCCceeecCCCCCCCCCCCCCCCCC
Q 024012 88 VVTKAQMVDRYAQILTKVLGNEKDAQMCI-YHVSWQSNFGFCCELDDECAQELTGVPGVLSVQPDENFGSENKDYGGNNL 166 (274)
Q Consensus 88 ~~t~~~L~~~F~~~l~~~~G~v~~v~i~~-~~~g~srgfgFV~f~~~e~a~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~ 166 (274)
.++.-+|.++|... |+|.+|+++. ..++.++|.|||+|.|.++...|+.+.|.......-.... .....+..
T Consensus 190 r~~pRdL~efFs~~-----gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~aiaLsGqrllg~pv~vq~--sEaeknr~ 262 (549)
T KOG0147|consen 190 RNPPRDLEEFFSIV-----GKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAIALSGQRLLGVPVIVQL--SEAEKNRA 262 (549)
T ss_pred cCCchhHHHHHHhh-----cCcceeEeeccccchhhcceeEEEEecccchhhHhhhcCCcccCceeEecc--cHHHHHHH
Confidence 47788999999977 9999999777 5678899999999999999999999988643211111000 00000000
Q ss_pred CCCCCCCCCCCCCCCCccccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHH
Q 024012 167 QNSMVPSDSSEASPTQIKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKE 246 (274)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~d~~~g~~rG~aFV~F~s~~~A~~Ai~~ 246 (274)
.... ..........+-..|||+||++++++++|+.+|++||.|+.|.+.+|.+||.++|||||+|.+.++|.+|+..
T Consensus 263 a~~s---~a~~~k~~~~p~~rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ar~a~e~ 339 (549)
T KOG0147|consen 263 ANAS---PALQGKGFTGPMRRLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKEDARKALEQ 339 (549)
T ss_pred Hhcc---ccccccccccchhhhhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHHHHHHHHH
Confidence 0000 0000011112233499999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCceeCCEEeEEEeecC
Q 024012 247 MNGKIINGWMIVVDVAKT 264 (274)
Q Consensus 247 l~g~~l~G~~l~V~~a~~ 264 (274)
|||.+|.|+.|+|..-..
T Consensus 340 lngfelAGr~ikV~~v~~ 357 (549)
T KOG0147|consen 340 LNGFELAGRLIKVSVVTE 357 (549)
T ss_pred hccceecCceEEEEEeee
Confidence 999999999999886543
No 30
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.84 E-value=9.4e-21 Score=155.63 Aligned_cols=86 Identities=24% Similarity=0.385 Sum_probs=82.0
Q ss_pred CccccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEeEEEe
Q 024012 182 QIKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVDV 261 (274)
Q Consensus 182 ~~~~~~lfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~d~~~g~~rG~aFV~F~s~~~A~~Ai~~l~g~~l~G~~l~V~~ 261 (274)
.+.+++|||-.||.+..+.+|..+|-+||.|++.++..|+.|+.||.||||.|+++.+|+.||.+|||+.|+-++|+|.+
T Consensus 282 GPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDNp~SaQaAIqAMNGFQIGMKRLKVQL 361 (371)
T KOG0146|consen 282 GPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQL 361 (371)
T ss_pred CCCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeEecCCchhHHHHHHHhcchhhhhhhhhhhh
Confidence 34578999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCC
Q 024012 262 AKTTPK 267 (274)
Q Consensus 262 a~~~~~ 267 (274)
.+|+..
T Consensus 362 KRPkda 367 (371)
T KOG0146|consen 362 KRPKDA 367 (371)
T ss_pred cCcccc
Confidence 888764
No 31
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.84 E-value=1.7e-20 Score=167.32 Aligned_cols=167 Identities=19% Similarity=0.358 Sum_probs=136.8
Q ss_pred eeecCCCcceeEEecCCCCCCCCHHHHHHHHHHHHHhhhCCcccceEEEecCCCCCCeEEeeeCCHHHHHHHHC-CCCce
Q 024012 68 LFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIYHVSWQSNFGFCCELDDECAQELTG-VPGVL 146 (274)
Q Consensus 68 lf~vgnl~~~~~~~~~p~~~~~t~~~L~~~F~~~l~~~~G~v~~v~i~~~~~g~srgfgFV~f~~~e~a~~a~~-~~g~~ 146 (274)
+| |.||+. +++...|.++|+.+ |+|.+|++..+..| ++|| ||+|.++++|++|++ +||.+
T Consensus 79 ~~-i~nl~~-----------~~~~~~~~d~f~~~-----g~ilS~kv~~~~~g-~kg~-FV~f~~e~~a~~ai~~~ng~l 139 (369)
T KOG0123|consen 79 VF-IKNLDE-----------SIDNKSLYDTFSEF-----GNILSCKVATDENG-SKGY-FVQFESEESAKKAIEKLNGML 139 (369)
T ss_pred ee-ecCCCc-----------ccCcHHHHHHHHhh-----cCeeEEEEEEcCCC-ceee-EEEeCCHHHHHHHHHHhcCcc
Confidence 78 999999 79999999999977 99999999999888 9999 999999999977765 48876
Q ss_pred eecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCc
Q 024012 147 SVQPDENFGSENKDYGGNNLQNSMVPSDSSEASPTQIKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRS 226 (274)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~d~~~g~~ 226 (274)
. ..++.+.+............. . ....-..++|.+++.+++++.|..+|+.+|.|.++.++.+. .|++
T Consensus 140 l--------~~kki~vg~~~~~~er~~~~~--~-~~~~~t~v~vk~~~~~~~~~~l~~~f~~~g~i~s~~v~~~~-~g~~ 207 (369)
T KOG0123|consen 140 L--------NGKKIYVGLFERKEEREAPLG--E-YKKRFTNVYVKNLEEDSTDEELKDLFSAYGSITSVAVMRDS-IGKS 207 (369)
T ss_pred c--------CCCeeEEeeccchhhhccccc--c-hhhhhhhhheeccccccchHHHHHhhcccCcceEEEEeecC-CCCC
Confidence 4 222333333222221111111 1 23346789999999999999999999999999999999987 6779
Q ss_pred ceEEEEEeCCHHHHHHHHHHhCCceeCCEEeEEEeecCC
Q 024012 227 KGYAFIEYTTEEAASAALKEMNGKIINGWMIVVDVAKTT 265 (274)
Q Consensus 227 rG~aFV~F~s~~~A~~Ai~~l~g~~l~G~~l~V~~a~~~ 265 (274)
+|||||.|.++++|..|+..|+|..++|..+.|.-++.+
T Consensus 208 ~~~gfv~f~~~e~a~~av~~l~~~~~~~~~~~V~~aqkk 246 (369)
T KOG0123|consen 208 KGFGFVNFENPEDAKKAVETLNGKIFGDKELYVGRAQKK 246 (369)
T ss_pred CCccceeecChhHHHHHHHhccCCcCCccceeecccccc
Confidence 999999999999999999999999999999999888763
No 32
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.81 E-value=2.1e-19 Score=156.33 Aligned_cols=83 Identities=27% Similarity=0.473 Sum_probs=79.1
Q ss_pred cccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEeEEEeec
Q 024012 184 KTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVDVAK 263 (274)
Q Consensus 184 ~~~~lfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~d~~~g~~rG~aFV~F~s~~~A~~Ai~~l~g~~l~G~~l~V~~a~ 263 (274)
.+..|||.+||.+.-+.+|-..|.+||.|.+.++..|+.||-++.|+||.|++..+|..||..|||..+++++++|...+
T Consensus 423 eGanlfiyhlPqefgdq~l~~~f~pfG~Vlsakvfidk~tnlskcfgfvSyen~~sa~~aI~amngfQig~KrlkVQlk~ 502 (510)
T KOG0144|consen 423 EGANLFIYHLPQEFGDQDLIATFQPFGGVLSAKVFIDKVTNLSKCFGFVSYENAQSAQNAISAMNGFQIGSKRLKVQLKR 502 (510)
T ss_pred CccceeeeeCchhhhhHHHHHHhccccceeEEEEEEecccCHhhhcCcccccchhhhHHHHHHhcchhhccccceEEeee
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999877
Q ss_pred CCC
Q 024012 264 TTP 266 (274)
Q Consensus 264 ~~~ 266 (274)
.+.
T Consensus 503 ~~~ 505 (510)
T KOG0144|consen 503 DRN 505 (510)
T ss_pred ccC
Confidence 654
No 33
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.76 E-value=6.5e-18 Score=115.49 Aligned_cols=70 Identities=44% Similarity=0.709 Sum_probs=67.5
Q ss_pred EEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEeE
Q 024012 188 LFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIV 258 (274)
Q Consensus 188 lfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~d~~~g~~rG~aFV~F~s~~~A~~Ai~~l~g~~l~G~~l~ 258 (274)
|||+|||.++|+++|+++|++||.|..+.+..+ .++.++|+|||+|.+.++|++|++.|+|..++|++|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~-~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRN-SSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEE-TTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhccccccccc-ccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 799999999999999999999999999999998 5899999999999999999999999999999999986
No 34
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.75 E-value=9e-18 Score=149.00 Aligned_cols=86 Identities=26% Similarity=0.378 Sum_probs=81.2
Q ss_pred CCccccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEeEEE
Q 024012 181 TQIKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVD 260 (274)
Q Consensus 181 ~~~~~~~lfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~d~~~g~~rG~aFV~F~s~~~A~~Ai~~l~g~~l~G~~l~V~ 260 (274)
.....++|||+|||+++|+++|+++|+.||.|++|+|++|..+++++|||||+|.++++|++|++.|||..+.+++|+|.
T Consensus 103 ~~~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V~ 182 (346)
T TIGR01659 103 TNNSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKVS 182 (346)
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeeee
Confidence 34457899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecCCC
Q 024012 261 VAKTTP 266 (274)
Q Consensus 261 ~a~~~~ 266 (274)
|+++..
T Consensus 183 ~a~p~~ 188 (346)
T TIGR01659 183 YARPGG 188 (346)
T ss_pred cccccc
Confidence 998754
No 35
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.74 E-value=9e-18 Score=136.58 Aligned_cols=83 Identities=28% Similarity=0.430 Sum_probs=80.3
Q ss_pred cccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEeEEEeec
Q 024012 184 KTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVDVAK 263 (274)
Q Consensus 184 ~~~~lfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~d~~~g~~rG~aFV~F~s~~~A~~Ai~~l~g~~l~G~~l~V~~a~ 263 (274)
...+|-|.||+.+++|++|+++|.+||.|.++.|.+|+.||.+||||||.|.++++|.+||..|||+-++.--|+|+|++
T Consensus 188 D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEwsk 267 (270)
T KOG0122|consen 188 DEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEWSK 267 (270)
T ss_pred ccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEecC
Confidence 57789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCC
Q 024012 264 TTP 266 (274)
Q Consensus 264 ~~~ 266 (274)
|+.
T Consensus 268 P~~ 270 (270)
T KOG0122|consen 268 PSN 270 (270)
T ss_pred CCC
Confidence 863
No 36
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.71 E-value=2.3e-17 Score=133.68 Aligned_cols=80 Identities=43% Similarity=0.654 Sum_probs=74.2
Q ss_pred cccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEeEEEeec
Q 024012 184 KTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVDVAK 263 (274)
Q Consensus 184 ~~~~lfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~d~~~g~~rG~aFV~F~s~~~A~~Ai~~l~g~~l~G~~l~V~~a~ 263 (274)
.-++||||||+|.+..+.|+++|++||+|+++.|+.|+.+|+|||||||+|.+.++|.+|++. -+-.|+||+..+.+|-
T Consensus 11 ~~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~d-p~piIdGR~aNcnlA~ 89 (247)
T KOG0149|consen 11 TFTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKD-PNPIIDGRKANCNLAS 89 (247)
T ss_pred eEEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcC-CCCcccccccccchhh
Confidence 467999999999999999999999999999999999999999999999999999999999966 4578999998888765
Q ss_pred C
Q 024012 264 T 264 (274)
Q Consensus 264 ~ 264 (274)
-
T Consensus 90 l 90 (247)
T KOG0149|consen 90 L 90 (247)
T ss_pred h
Confidence 4
No 37
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.69 E-value=2.4e-16 Score=108.01 Aligned_cols=70 Identities=37% Similarity=0.658 Sum_probs=65.4
Q ss_pred EEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEeE
Q 024012 188 LFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIV 258 (274)
Q Consensus 188 lfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~d~~~g~~rG~aFV~F~s~~~A~~Ai~~l~g~~l~G~~l~ 258 (274)
|||+|||+++++++|+++|+.||.|..+++..++. +.++|+|||+|.+.++|.+|++.++|..++|+.|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~-~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKD-GQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTT-SSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeec-cccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 79999999999999999999999999999999986 89999999999999999999999999999999985
No 38
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.69 E-value=8.1e-16 Score=124.39 Aligned_cols=171 Identities=20% Similarity=0.295 Sum_probs=127.2
Q ss_pred eeeecCCCcceeEEecCCCCCCCCHHHHHH----HHHHHHHhhhCCcccceEEEecCCCCCCeEEeeeCCHHHH-HHHHC
Q 024012 67 LLFPLGTTKHWLVRMDKPGVGVVTKAQMVD----RYAQILTKVLGNEKDAQMCIYHVSWQSNFGFCCELDDECA-QELTG 141 (274)
Q Consensus 67 ~lf~vgnl~~~~~~~~~p~~~~~t~~~L~~----~F~~~l~~~~G~v~~v~i~~~~~g~srgfgFV~f~~~e~a-~~a~~ 141 (274)
||+ |.||+. .+..++|+. +|+++ |.|.+|.+. .+.+.||-|||.|.+.+.| .+...
T Consensus 11 TlY-InnLne-----------kI~~~elkrsL~~LFsqf-----G~ildI~a~--kt~KmRGQA~VvFk~~~~As~A~r~ 71 (221)
T KOG4206|consen 11 TLY-INNLNE-----------KIKKDELKRSLYLLFSQF-----GKILDISAF--KTPKMRGQAFVVFKETEAASAALRA 71 (221)
T ss_pred eEe-ehhccc-----------cccHHHHHHHHHHHHHhh-----CCeEEEEec--CCCCccCceEEEecChhHHHHHHHH
Confidence 788 999999 699999998 88877 999887776 8899999999999999999 66667
Q ss_pred CCCce------eecCCCCCCCCCCC-----------CCCCCC----------------CCCCCCCCCCCCCCCCccccEE
Q 024012 142 VPGVL------SVQPDENFGSENKD-----------YGGNNL----------------QNSMVPSDSSEASPTQIKTKKL 188 (274)
Q Consensus 142 ~~g~~------~~~~~~~~~~~~~~-----------~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~l 188 (274)
|+|.. .++..+........ ...... .....+... ......++..|
T Consensus 72 l~gfpFygK~mriqyA~s~sdii~~~~~~~v~~~~k~~~~~~~~~~~~~~~ng~~~~~~~~~~p~p~--~~~~~ppn~il 149 (221)
T KOG4206|consen 72 LQGFPFYGKPMRIQYAKSDSDIIAQAPGTFVEKEKKINGEILARIKQPLDTNGHFYNMNRMNLPPPF--LAQMAPPNNIL 149 (221)
T ss_pred hcCCcccCchhheecccCccchhhccCceeccccCccccccccccCCcccccccccccccccCCCCc--cccCCCCceEE
Confidence 78752 22221111100000 000000 000001111 12235568899
Q ss_pred EEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeC-CEEeEEEeec
Q 024012 189 FVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIIN-GWMIVVDVAK 263 (274)
Q Consensus 189 fV~nLp~~~te~~L~~~F~~fG~i~~v~i~~d~~~g~~rG~aFV~F~s~~~A~~Ai~~l~g~~l~-G~~l~V~~a~ 263 (274)
|+.|||..++.+.|..+|.+|....+++++... +|.|||+|.+...|..|.+.++|..+. .+.++|.+|+
T Consensus 150 f~~niP~es~~e~l~~lf~qf~g~keir~i~~~-----~~iAfve~~~d~~a~~a~~~lq~~~it~~~~m~i~~a~ 220 (221)
T KOG4206|consen 150 FLTNIPSESESEMLSDLFEQFPGFKEIRLIPPR-----SGIAFVEFLSDRQASAAQQALQGFKITKKNTMQITFAK 220 (221)
T ss_pred EEecCCcchhHHHHHHHHhhCcccceeEeccCC-----CceeEEecchhhhhHHHhhhhccceeccCceEEecccC
Confidence 999999999999999999999999999998764 679999999999999999999999988 8999998875
No 39
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.69 E-value=1.5e-16 Score=134.37 Aligned_cols=88 Identities=32% Similarity=0.568 Sum_probs=79.5
Q ss_pred CCCCCCCccccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCE
Q 024012 176 SEASPTQIKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGW 255 (274)
Q Consensus 176 ~~~~~~~~~~~~lfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~d~~~g~~rG~aFV~F~s~~~A~~Ai~~l~g~~l~G~ 255 (274)
+...+.....++|+|+|||+...+-||+.+|.+||.|.+|.|+.+. ..|||||||+|++.++|++|-++|||+.+.||
T Consensus 87 st~s~s~~~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNE--RGSKGFGFVTmen~~dadRARa~LHgt~VEGR 164 (376)
T KOG0125|consen 87 STNSSSKDTPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNE--RGSKGFGFVTMENPADADRARAELHGTVVEGR 164 (376)
T ss_pred CCcCCCCCCCceeEeecCCccccCccHHHHHHhhCceeeEEEEecc--CCCCccceEEecChhhHHHHHHHhhcceeece
Confidence 3334444557899999999999999999999999999999999984 56899999999999999999999999999999
Q ss_pred EeEEEeecCC
Q 024012 256 MIVVDVAKTT 265 (274)
Q Consensus 256 ~l~V~~a~~~ 265 (274)
+|.|.-|..+
T Consensus 165 kIEVn~ATar 174 (376)
T KOG0125|consen 165 KIEVNNATAR 174 (376)
T ss_pred EEEEeccchh
Confidence 9999999874
No 40
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.68 E-value=1.1e-16 Score=119.00 Aligned_cols=88 Identities=27% Similarity=0.460 Sum_probs=82.5
Q ss_pred CCCCccccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEeE
Q 024012 179 SPTQIKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIV 258 (274)
Q Consensus 179 ~~~~~~~~~lfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~d~~~g~~rG~aFV~F~s~~~A~~Ai~~l~g~~l~G~~l~ 258 (274)
++....+..|||.|+....+|++|.+.|..||+|+.+.+..|+.||-.+|||+|+|++.++|++|+.+|||..|.|+.|.
T Consensus 66 PqrSVEGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~ 145 (170)
T KOG0130|consen 66 PQRSVEGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVS 145 (170)
T ss_pred CccceeeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCcee
Confidence 44455688999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeecCCC
Q 024012 259 VDVAKTTP 266 (274)
Q Consensus 259 V~~a~~~~ 266 (274)
|+|+-.+.
T Consensus 146 VDw~Fv~g 153 (170)
T KOG0130|consen 146 VDWCFVKG 153 (170)
T ss_pred EEEEEecC
Confidence 99997653
No 41
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.66 E-value=4.5e-16 Score=145.59 Aligned_cols=82 Identities=34% Similarity=0.596 Sum_probs=77.6
Q ss_pred cccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEeEEEeec
Q 024012 184 KTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVDVAK 263 (274)
Q Consensus 184 ~~~~lfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~d~~~g~~rG~aFV~F~s~~~A~~Ai~~l~g~~l~G~~l~V~~a~ 263 (274)
..++|||+|||+++++++|+++|++||.|.+|+|++|+.+|+++|||||+|.+.++|++|++.|||..++|+.|+|.+..
T Consensus 106 ~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~rp~ 185 (612)
T TIGR01645 106 IMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPS 185 (612)
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeecccc
Confidence 36789999999999999999999999999999999999999999999999999999999999999999999999998765
Q ss_pred CC
Q 024012 264 TT 265 (274)
Q Consensus 264 ~~ 265 (274)
..
T Consensus 186 ~~ 187 (612)
T TIGR01645 186 NM 187 (612)
T ss_pred cc
Confidence 43
No 42
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.65 E-value=1.2e-14 Score=113.69 Aligned_cols=162 Identities=16% Similarity=0.221 Sum_probs=114.3
Q ss_pred ceeeeecCCCcceeEEecCCCCCCCCHHHHHHHHHHHHHhhhCCcccceEEEecCCCCCCeEEeeeCCHHHHHHH-HCCC
Q 024012 65 TTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIYHVSWQSNFGFCCELDDECAQEL-TGVP 143 (274)
Q Consensus 65 s~~lf~vgnl~~~~~~~~~p~~~~~t~~~L~~~F~~~l~~~~G~v~~v~i~~~~~g~srgfgFV~f~~~e~a~~a-~~~~ 143 (274)
+..++ |||||. ++-+.+|.++|.++ |.|.+|.++. .-...+||||+|+++.+|+.| ..-+
T Consensus 6 ~~~iy-vGNLP~-----------diRekeieDlFyKy-----g~i~~ieLK~--r~g~ppfafVeFEd~RDAeDAiygRd 66 (241)
T KOG0105|consen 6 SRRIY-VGNLPG-----------DIREKEIEDLFYKY-----GRIREIELKN--RPGPPPFAFVEFEDPRDAEDAIYGRD 66 (241)
T ss_pred cceEE-ecCCCc-----------chhhccHHHHHhhh-----cceEEEEecc--CCCCCCeeEEEecCccchhhhhhccc
Confidence 45577 999999 79999999999988 9999998883 334468999999999999544 4446
Q ss_pred Cc------eeecCCCCCCCCCCCCCCCCCCCC--CCCCCCCCCCCCCccccEEEEcCCCCCCCHHHHHHHHhccCCeEEE
Q 024012 144 GV------LSVQPDENFGSENKDYGGNNLQNS--MVPSDSSEASPTQIKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEV 215 (274)
Q Consensus 144 g~------~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~lfV~nLp~~~te~~L~~~F~~fG~i~~v 215 (274)
|. +.+...+...+ .....+...... --.......++.......|.|.+||++-++++|+++..+-|.|...
T Consensus 67 GYdydg~rLRVEfprggr~-s~~~~G~y~gggrgGgg~gg~rgppsrrSe~RVvVsGLp~SgSWQDLKDHmReaGdvCfa 145 (241)
T KOG0105|consen 67 GYDYDGCRLRVEFPRGGRS-SSDRRGSYSGGGRGGGGGGGRRGPPSRRSEYRVVVSGLPPSGSWQDLKDHMREAGDVCFA 145 (241)
T ss_pred ccccCcceEEEEeccCCCc-ccccccccCCCCCCCCCCCcccCCcccccceeEEEecCCCCCchHHHHHHHHhhCCeeee
Confidence 53 33322211110 000000000000 0000111113333446789999999999999999999999999999
Q ss_pred EEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeC
Q 024012 216 KIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIIN 253 (274)
Q Consensus 216 ~i~~d~~~g~~rG~aFV~F~s~~~A~~Ai~~l~g~~l~ 253 (274)
.+.+|- ++.|+|...|+.+-|+..|+...+.
T Consensus 146 dv~rDg-------~GvV~~~r~eDMkYAvr~ld~~~~~ 176 (241)
T KOG0105|consen 146 DVQRDG-------VGVVEYLRKEDMKYAVRKLDDQKFR 176 (241)
T ss_pred eeeccc-------ceeeeeeehhhHHHHHHhhcccccc
Confidence 998874 8999999999999999999887765
No 43
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.65 E-value=7.7e-16 Score=128.85 Aligned_cols=76 Identities=17% Similarity=0.312 Sum_probs=71.4
Q ss_pred ccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEeEEEeecC
Q 024012 185 TKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVDVAKT 264 (274)
Q Consensus 185 ~~~lfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~d~~~g~~rG~aFV~F~s~~~A~~Ai~~l~g~~l~G~~l~V~~a~~ 264 (274)
.++|||+|||+.+|+++|+++|+.||.|++|.|++|+. ++|||||+|.+.++|+.|| .|+|..|.|+.|.|.++..
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~---~~GfAFVtF~d~eaAe~Al-lLnG~~l~gr~V~Vt~a~~ 79 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENE---RSQIAYVTFKDPQGAETAL-LLSGATIVDQSVTITPAED 79 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCC---CCCEEEEEeCcHHHHHHHH-HhcCCeeCCceEEEEeccC
Confidence 67999999999999999999999999999999998863 5789999999999999999 6999999999999999874
No 44
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.65 E-value=3e-16 Score=115.62 Aligned_cols=82 Identities=27% Similarity=0.507 Sum_probs=77.8
Q ss_pred ccccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEeEEEee
Q 024012 183 IKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVDVA 262 (274)
Q Consensus 183 ~~~~~lfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~d~~~g~~rG~aFV~F~s~~~A~~Ai~~l~g~~l~G~~l~V~~a 262 (274)
..+.+|||+||++.++||+|.++|+++|+|..|.+-.|+.+..+.|||||+|.+.++|..|++-++|+.++.++|+++|.
T Consensus 34 r~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~D 113 (153)
T KOG0121|consen 34 RKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDWD 113 (153)
T ss_pred hhcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeecc
Confidence 34789999999999999999999999999999999999989999999999999999999999999999999999999996
Q ss_pred cC
Q 024012 263 KT 264 (274)
Q Consensus 263 ~~ 264 (274)
-.
T Consensus 114 ~G 115 (153)
T KOG0121|consen 114 AG 115 (153)
T ss_pred cc
Confidence 54
No 45
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.64 E-value=2.1e-15 Score=140.82 Aligned_cols=80 Identities=29% Similarity=0.469 Sum_probs=74.3
Q ss_pred cccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeC-CEEeEEEee
Q 024012 184 KTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIIN-GWMIVVDVA 262 (274)
Q Consensus 184 ~~~~lfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~d~~~g~~rG~aFV~F~s~~~A~~Ai~~l~g~~l~-G~~l~V~~a 262 (274)
..++|||+|||++++|++|+++|++||.|.+++|++| .+|++||||||+|.+.++|++||+.|||..+. |+.|.|.++
T Consensus 57 ~~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D-~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l~V~~S 135 (578)
T TIGR01648 57 RGCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMD-FSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLLGVCIS 135 (578)
T ss_pred CCCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEEC-CCCCccceEEEEeCCHHHHHHHHHHcCCCeecCCcccccccc
Confidence 4689999999999999999999999999999999999 69999999999999999999999999999985 788888766
Q ss_pred cC
Q 024012 263 KT 264 (274)
Q Consensus 263 ~~ 264 (274)
..
T Consensus 136 ~~ 137 (578)
T TIGR01648 136 VD 137 (578)
T ss_pred cc
Confidence 53
No 46
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.63 E-value=3.1e-17 Score=127.80 Aligned_cols=79 Identities=30% Similarity=0.581 Sum_probs=75.9
Q ss_pred ccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEeEEEeec
Q 024012 185 TKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVDVAK 263 (274)
Q Consensus 185 ~~~lfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~d~~~g~~rG~aFV~F~s~~~A~~Ai~~l~g~~l~G~~l~V~~a~ 263 (274)
+.=|||||||+.+||.||.-.|++||+|+.|.+++|+.||+|+||||+.|++..+..-|+..|||..|.||.|+|+...
T Consensus 35 sA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDHv~ 113 (219)
T KOG0126|consen 35 SAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDHVS 113 (219)
T ss_pred ceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEeeecc
Confidence 5679999999999999999999999999999999999999999999999999999999999999999999999998644
No 47
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.63 E-value=6.5e-16 Score=122.83 Aligned_cols=84 Identities=30% Similarity=0.537 Sum_probs=79.4
Q ss_pred CCccccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEeEEE
Q 024012 181 TQIKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVD 260 (274)
Q Consensus 181 ~~~~~~~lfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~d~~~g~~rG~aFV~F~s~~~A~~Ai~~l~g~~l~G~~l~V~ 260 (274)
.......|-|.||-+-|+.++|+.+|++||.|-+|.|++|+.|+.++|||||.|....+|+.|+.+|+|..|+|+.|.|.
T Consensus 9 dv~gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq 88 (256)
T KOG4207|consen 9 DVEGMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQ 88 (256)
T ss_pred CcccceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeeeh
Confidence 33446789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecC
Q 024012 261 VAKT 264 (274)
Q Consensus 261 ~a~~ 264 (274)
+|+-
T Consensus 89 ~ary 92 (256)
T KOG4207|consen 89 MARY 92 (256)
T ss_pred hhhc
Confidence 8874
No 48
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.63 E-value=2.9e-16 Score=125.91 Aligned_cols=85 Identities=34% Similarity=0.565 Sum_probs=81.7
Q ss_pred cccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEeEEEeec
Q 024012 184 KTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVDVAK 263 (274)
Q Consensus 184 ~~~~lfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~d~~~g~~rG~aFV~F~s~~~A~~Ai~~l~g~~l~G~~l~V~~a~ 263 (274)
..++|||++|...++|.-|...|-+||.|.+|+++.|.+++++||||||+|.-.|+|.+||..||+.+|-||.|+|.+|+
T Consensus 9 ~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~Ak 88 (298)
T KOG0111|consen 9 QKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNLAK 88 (298)
T ss_pred cceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEeecC
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCC
Q 024012 264 TTPKY 268 (274)
Q Consensus 264 ~~~~~ 268 (274)
|.+-.
T Consensus 89 P~kik 93 (298)
T KOG0111|consen 89 PEKIK 93 (298)
T ss_pred Ccccc
Confidence 97643
No 49
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.62 E-value=1.7e-15 Score=117.57 Aligned_cols=81 Identities=30% Similarity=0.507 Sum_probs=75.2
Q ss_pred ccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEeEEEeecC
Q 024012 185 TKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVDVAKT 264 (274)
Q Consensus 185 ~~~lfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~d~~~g~~rG~aFV~F~s~~~A~~Ai~~l~g~~l~G~~l~V~~a~~ 264 (274)
.++|||+||+..+++.+|+..|..||+|..|-|.+.+ .|||||+|+++.+|+.|+..|+|+.|.|..|+|+++.-
T Consensus 10 ~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArnP-----PGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S~G 84 (195)
T KOG0107|consen 10 NTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARNP-----PGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELSTG 84 (195)
T ss_pred CceEEeccCCCCcchHHHHHHHHhcCcceeEEEeecC-----CCceEEeccCcccHHHHHhhcCCccccCceEEEEeecC
Confidence 7899999999999999999999999999999888764 78999999999999999999999999999999999998
Q ss_pred CCCCCC
Q 024012 265 TPKYSR 270 (274)
Q Consensus 265 ~~~~~~ 270 (274)
.++..+
T Consensus 85 ~~r~~r 90 (195)
T KOG0107|consen 85 RPRGSR 90 (195)
T ss_pred Cccccc
Confidence 876443
No 50
>PLN03213 repressor of silencing 3; Provisional
Probab=99.62 E-value=2.2e-15 Score=133.56 Aligned_cols=79 Identities=19% Similarity=0.328 Sum_probs=73.3
Q ss_pred ccccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCcceEEEEEeCCH--HHHHHHHHHhCCceeCCEEeEEE
Q 024012 183 IKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTE--EAASAALKEMNGKIINGWMIVVD 260 (274)
Q Consensus 183 ~~~~~lfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~d~~~g~~rG~aFV~F~s~--~~A~~Ai~~l~g~~l~G~~l~V~ 260 (274)
..+.+||||||++.+++++|+..|++||.|.+|.|++. +| ||||||+|.+. .++.+||..|||..+.|+.|+|.
T Consensus 8 ~~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpRE--TG--RGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVN 83 (759)
T PLN03213 8 GGGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVRT--KG--RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLE 83 (759)
T ss_pred CcceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEecc--cC--CceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEe
Confidence 34689999999999999999999999999999999944 66 99999999987 78999999999999999999999
Q ss_pred eecCC
Q 024012 261 VAKTT 265 (274)
Q Consensus 261 ~a~~~ 265 (274)
.|++.
T Consensus 84 KAKP~ 88 (759)
T PLN03213 84 KAKEH 88 (759)
T ss_pred eccHH
Confidence 99874
No 51
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.61 E-value=4.4e-15 Score=124.17 Aligned_cols=83 Identities=42% Similarity=0.688 Sum_probs=79.1
Q ss_pred ccccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEeEEEee
Q 024012 183 IKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVDVA 262 (274)
Q Consensus 183 ~~~~~lfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~d~~~g~~rG~aFV~F~s~~~A~~Ai~~l~g~~l~G~~l~V~~a 262 (274)
.+-+||||+-|+.+++|..|+..|+.||.|+.|.|++|..||+++|||||+|...-+...|.+..+|..|+|+.|.|++-
T Consensus 99 DPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~VDvE 178 (335)
T KOG0113|consen 99 DPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILVDVE 178 (335)
T ss_pred CccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEEEEec
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999986
Q ss_pred cCC
Q 024012 263 KTT 265 (274)
Q Consensus 263 ~~~ 265 (274)
...
T Consensus 179 RgR 181 (335)
T KOG0113|consen 179 RGR 181 (335)
T ss_pred ccc
Confidence 653
No 52
>smart00362 RRM_2 RNA recognition motif.
Probab=99.61 E-value=6.8e-15 Score=100.02 Aligned_cols=72 Identities=38% Similarity=0.629 Sum_probs=67.9
Q ss_pred EEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEeEEE
Q 024012 187 KLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVD 260 (274)
Q Consensus 187 ~lfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~d~~~g~~rG~aFV~F~s~~~A~~Ai~~l~g~~l~G~~l~V~ 260 (274)
+|||+|||..+++++|+++|++||.|..+.+..++ +.++|+|||+|.+.++|++|++.++|..+.|++|.|+
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~--~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v~ 72 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDT--GKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRVE 72 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCC--CCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEeeC
Confidence 58999999999999999999999999999999876 7789999999999999999999999999999999873
No 53
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=99.61 E-value=2.2e-15 Score=122.95 Aligned_cols=164 Identities=24% Similarity=0.319 Sum_probs=118.5
Q ss_pred eeecCCCcceeEEecCCCCCCCCHHHHHHHHHHHHHhhhCCcccceEEEecCCCCCCeEEeeeCCHHHH-HHHHCCCCce
Q 024012 68 LFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIYHVSWQSNFGFCCELDDECA-QELTGVPGVL 146 (274)
Q Consensus 68 lf~vgnl~~~~~~~~~p~~~~~t~~~L~~~F~~~l~~~~G~v~~v~i~~~~~g~srgfgFV~f~~~e~a-~~a~~~~g~~ 146 (274)
++ ||+||+ .+.+++|..+|.++ |.+.++.|+ .|||||+|.+..+| .++..++|..
T Consensus 4 v~-vg~~~~-----------~~~~~d~E~~f~~y-----g~~~d~~mk-------~gf~fv~fed~rda~Dav~~l~~~~ 59 (216)
T KOG0106|consen 4 VY-IGRLPY-----------RARERDVERFFKGY-----GKIPDADMK-------NGFGFVEFEDPRDADDAVHDLDGKE 59 (216)
T ss_pred ee-ecccCC-----------ccchhHHHHHHhhc-----cccccceee-------cccceeccCchhhhhcccchhcCce
Confidence 66 999999 69999999999988 999999999 99999999999999 5555667653
Q ss_pred eecCCCCCCCCCCCCC---CCCCCCCCCCCCCCCCCCCCccccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCC
Q 024012 147 SVQPDENFGSENKDYG---GNNLQNSMVPSDSSEASPTQIKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKIS 223 (274)
Q Consensus 147 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~d~~~ 223 (274)
..... ......+... +..... ..................+.|.+++..+.+.+|.++|.++|++....+
T Consensus 60 l~~e~-~vve~~r~~~~~~g~~~~g-~r~~~~~~~~~p~~s~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~------ 131 (216)
T KOG0106|consen 60 LCGER-LVVEHARGKRRGRGRPRGG-DRRSDSRRYRPPSRTHFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDA------ 131 (216)
T ss_pred eccee-eeeecccccccccCCCCCC-CccchhhccCCcccccceeeeccchhhhhHHHHhhhhcccCCCchhhh------
Confidence 32211 0000000000 000000 000001112233445778999999999999999999999999965544
Q ss_pred CCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEeEEEeecCC
Q 024012 224 KRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVDVAKTT 265 (274)
Q Consensus 224 g~~rG~aFV~F~s~~~A~~Ai~~l~g~~l~G~~l~V~~a~~~ 265 (274)
.+++|||+|++.++|.+|+..|+|..+.|+.|.+..+-..
T Consensus 132 --~~~~~~v~Fs~~~da~ra~~~l~~~~~~~~~l~~~~~~~d 171 (216)
T KOG0106|consen 132 --RRNFAFVEFSEQEDAKRALEKLDGKKLNGRRISVEKNSRD 171 (216)
T ss_pred --hccccceeehhhhhhhhcchhccchhhcCceeeecccCcc
Confidence 2569999999999999999999999999999999655443
No 54
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.59 E-value=7.8e-15 Score=128.65 Aligned_cols=85 Identities=31% Similarity=0.483 Sum_probs=79.9
Q ss_pred ccccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeC-CEEeEEEe
Q 024012 183 IKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIIN-GWMIVVDV 261 (274)
Q Consensus 183 ~~~~~lfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~d~~~g~~rG~aFV~F~s~~~A~~Ai~~l~g~~l~-G~~l~V~~ 261 (274)
..++.|||+.||.++.|++|.-+|++.|+|-+++|++|+.+|.+||||||.|.+.++|++||+.||+++|. |+.|.|..
T Consensus 81 ~~G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~igvc~ 160 (506)
T KOG0117|consen 81 PRGCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLLGVCV 160 (506)
T ss_pred CCCceEEecCCCccccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCEeEEEE
Confidence 56889999999999999999999999999999999999999999999999999999999999999999996 99999988
Q ss_pred ecCCCC
Q 024012 262 AKTTPK 267 (274)
Q Consensus 262 a~~~~~ 267 (274)
+..+-+
T Consensus 161 Svan~R 166 (506)
T KOG0117|consen 161 SVANCR 166 (506)
T ss_pred eeecce
Confidence 776543
No 55
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.59 E-value=1.8e-14 Score=132.78 Aligned_cols=182 Identities=19% Similarity=0.295 Sum_probs=120.3
Q ss_pred CceeeeecCCCcceeEEecCCCCCCCCHHHHHHHHHHHHHhhhCCcccceEEEecCCCCCCeEEeeeCCHHHHHHHHC-C
Q 024012 64 GTTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIYHVSWQSNFGFCCELDDECAQELTG-V 142 (274)
Q Consensus 64 ~s~~lf~vgnl~~~~~~~~~p~~~~~t~~~L~~~F~~~l~~~~G~v~~v~i~~~~~g~srgfgFV~f~~~e~a~~a~~-~ 142 (274)
.+.++..++|||. .+..++|.+.|..+ |.|..+.+. +.|. -+.|+|.++.+|++|.. |
T Consensus 383 rs~~vil~kNlpa-----------~t~~~elt~~F~~f-----G~i~rvllp--~~G~---~aiv~fl~p~eAr~Afrkl 441 (725)
T KOG0110|consen 383 RSDTVILVKNLPA-----------GTLSEELTEAFLRF-----GEIGRVLLP--PGGT---GAIVEFLNPLEARKAFRKL 441 (725)
T ss_pred hhcceeeeccCcc-----------ccccHHHHHHhhcc-----cccceeecC--cccc---eeeeeecCccchHHHHHHh
Confidence 3444444999999 79999999999966 999777333 2222 48999999999966643 3
Q ss_pred CCc--------eeecCCCCCCCC--CCCCCCCCCCC-------------CCCCCCCC-----CC--CCCCcc-ccEEEEc
Q 024012 143 PGV--------LSVQPDENFGSE--NKDYGGNNLQN-------------SMVPSDSS-----EA--SPTQIK-TKKLFVT 191 (274)
Q Consensus 143 ~g~--------~~~~~~~~~~~~--~~~~~~~~~~~-------------~~~~~~~~-----~~--~~~~~~-~~~lfV~ 191 (274)
... +...|...+... ........... ........ .. ...... .++|||.
T Consensus 442 aysr~k~~plyle~aP~dvf~~~pka~~~~~e~~~~~ee~~~Er~s~~d~~v~eD~d~te~ss~a~~a~~~~~~t~lfvk 521 (725)
T KOG0110|consen 442 AYSRFKSAPLYLEWAPEDVFTEDPKADDLSAESRSKMEENPSERVSAEDGQVEEDKDPTEESSLARVAEDEETETKLFVK 521 (725)
T ss_pred chhhhccCccccccChhhhccCCccccccccccccccccCcceecccccccccccCCccccccchhhhhccccchhhhhh
Confidence 321 222222222200 00000000000 00000000 00 001111 2339999
Q ss_pred CCCCCCCHHHHHHHHhccCCeEEEEEEecCCCC---CcceEEEEEeCCHHHHHHHHHHhCCceeCCEEeEEEeecCCC
Q 024012 192 GLSFYTSEKTLRAAFEGFGELVEVKIIMDKISK---RSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVDVAKTTP 266 (274)
Q Consensus 192 nLp~~~te~~L~~~F~~fG~i~~v~i~~d~~~g---~~rG~aFV~F~s~~~A~~Ai~~l~g~~l~G~~l~V~~a~~~~ 266 (274)
||++++|.++|..+|...|.|.++.|...+... .|.|||||+|.+.++|++|++.|+|+.|+|+.|.|.++..++
T Consensus 522 Nlnf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~S~~k~ 599 (725)
T KOG0110|consen 522 NLNFDTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKISENKP 599 (725)
T ss_pred cCCcccchhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEeccCcc
Confidence 999999999999999999999999888765221 255999999999999999999999999999999999998443
No 56
>smart00360 RRM RNA recognition motif.
Probab=99.59 E-value=8.7e-15 Score=99.11 Aligned_cols=71 Identities=38% Similarity=0.641 Sum_probs=67.5
Q ss_pred EcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEeEEE
Q 024012 190 VTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVD 260 (274)
Q Consensus 190 V~nLp~~~te~~L~~~F~~fG~i~~v~i~~d~~~g~~rG~aFV~F~s~~~A~~Ai~~l~g~~l~G~~l~V~ 260 (274)
|+|||..+++++|+++|++||.|..+.+..++.++.++|+|||+|.+.++|.+|+..|++..++|+.|.|+
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 57999999999999999999999999999988789999999999999999999999999999999999874
No 57
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.58 E-value=1.5e-14 Score=119.33 Aligned_cols=76 Identities=21% Similarity=0.194 Sum_probs=70.3
Q ss_pred cccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEeEEEeec
Q 024012 184 KTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVDVAK 263 (274)
Q Consensus 184 ~~~~lfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~d~~~g~~rG~aFV~F~s~~~A~~Ai~~l~g~~l~G~~l~V~~a~ 263 (274)
.+.+|||+||++.+|+++|+++|+.||.|.+|+|++|. ..+|+|||+|.++++|+.|+ .|+|..|.|++|.|....
T Consensus 4 ~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~---et~gfAfVtF~d~~aaetAl-lLnGa~l~d~~I~It~~~ 79 (243)
T PLN03121 4 GGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSG---EYACTAYVTFKDAYALETAV-LLSGATIVDQRVCITRWG 79 (243)
T ss_pred CceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCC---CcceEEEEEECCHHHHHHHH-hcCCCeeCCceEEEEeCc
Confidence 36899999999999999999999999999999999884 45689999999999999999 899999999999998754
No 58
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=99.57 E-value=3e-14 Score=126.57 Aligned_cols=163 Identities=16% Similarity=0.178 Sum_probs=117.6
Q ss_pred eeeecCCCcceeEEecCCCCCCCCHHHHHHHHHHHHHhhhCCcccceEEEecCCCCCCeEEeeeCCHHHHHHHHCCCCc-
Q 024012 67 LLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIYHVSWQSNFGFCCELDDECAQELTGVPGV- 145 (274)
Q Consensus 67 ~lf~vgnl~~~~~~~~~p~~~~~t~~~L~~~F~~~l~~~~G~v~~v~i~~~~~g~srgfgFV~f~~~e~a~~a~~~~g~- 145 (274)
.++.+..||+ ++|++||.++|+.+ .|.++ +..+.+|+..|-|||+|.++|++++|++.+.+
T Consensus 11 ~~vr~rGLPw-----------sat~~ei~~Ff~~~------~I~~~-~~~r~~Gr~sGeA~Ve~~seedv~~AlkkdR~~ 72 (510)
T KOG4211|consen 11 FEVRLRGLPW-----------SATEKEILDFFSNC------GIENL-EIPRRNGRPSGEAYVEFTSEEDVEKALKKDRES 72 (510)
T ss_pred eEEEecCCCc-----------cccHHHHHHHHhcC------ceeEE-EEeccCCCcCcceEEEeechHHHHHHHHhhHHH
Confidence 3555889998 79999999999966 44442 33356799999999999999999999987632
Q ss_pred -----eeecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccEEEEcCCCCCCCHHHHHHHHhccCCeEE-EEEEe
Q 024012 146 -----LSVQPDENFGSENKDYGGNNLQNSMVPSDSSEASPTQIKTKKLFVTGLSFYTSEKTLRAAFEGFGELVE-VKIIM 219 (274)
Q Consensus 146 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~te~~L~~~F~~fG~i~~-v~i~~ 219 (274)
+.|.+...... .+.- .............|-+++||+.+|++||.++|+..-.+.. +.++.
T Consensus 73 mg~RYIEVf~~~~~e~------------d~~~--~~~g~~s~~~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~ 138 (510)
T KOG4211|consen 73 MGHRYIEVFTAGGAEA------------DWVM--RPGGPNSSANDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPM 138 (510)
T ss_pred hCCceEEEEccCCccc------------cccc--cCCCCCCCCCCceEEecCCCccCcHHHHHHHhcCCcccccceeeec
Confidence 33222211110 0000 0000111134678999999999999999999998744444 45666
Q ss_pred cCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEeEEEeec
Q 024012 220 DKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVDVAK 263 (274)
Q Consensus 220 d~~~g~~rG~aFV~F~s~~~A~~Ai~~l~g~~l~G~~l~V~~a~ 263 (274)
|+ .+++.|-|||+|++.+.|++|+.. |...|+-|-|.|..+.
T Consensus 139 d~-rgR~tGEAfVqF~sqe~ae~Al~r-hre~iGhRYIEvF~Ss 180 (510)
T KOG4211|consen 139 DQ-RGRPTGEAFVQFESQESAEIALGR-HRENIGHRYIEVFRSS 180 (510)
T ss_pred cC-CCCcccceEEEecCHHHHHHHHHH-HHHhhccceEEeehhH
Confidence 66 677999999999999999999954 7788888888887654
No 59
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.56 E-value=2.9e-14 Score=101.31 Aligned_cols=81 Identities=20% Similarity=0.341 Sum_probs=74.2
Q ss_pred ccccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEeEEEee
Q 024012 183 IKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVDVA 262 (274)
Q Consensus 183 ~~~~~lfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~d~~~g~~rG~aFV~F~s~~~A~~Ai~~l~g~~l~G~~l~V~~a 262 (274)
..++.|||+|||+.+|.++..++|.+||.|..|+|-..+ ..+|-|||.|++..+|.+|+.+|+|..+.++.+.|-|-
T Consensus 16 evnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k---~TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vlyy 92 (124)
T KOG0114|consen 16 EVNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTK---ETRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVLYY 92 (124)
T ss_pred hhheeEEEecCCccccHHHHHHHhhcccceEEEEecCcc---CcCceEEEEehHhhhHHHHHHHhcccccCCceEEEEec
Confidence 347889999999999999999999999999999998765 45899999999999999999999999999999999987
Q ss_pred cCCC
Q 024012 263 KTTP 266 (274)
Q Consensus 263 ~~~~ 266 (274)
++..
T Consensus 93 q~~~ 96 (124)
T KOG0114|consen 93 QPED 96 (124)
T ss_pred CHHH
Confidence 7653
No 60
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.55 E-value=9.2e-15 Score=131.80 Aligned_cols=83 Identities=29% Similarity=0.569 Sum_probs=80.1
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEeEEEeecCC
Q 024012 186 KKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVDVAKTT 265 (274)
Q Consensus 186 ~~lfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~d~~~g~~rG~aFV~F~s~~~A~~Ai~~l~g~~l~G~~l~V~~a~~~ 265 (274)
..|||||+|+++++++|..+|+..|.|.+++++.|+.||+++||||++|.+.++|..|++.|||.++.|++|+|.|+...
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~~ 98 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASNR 98 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeeccccc
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999876
Q ss_pred CCC
Q 024012 266 PKY 268 (274)
Q Consensus 266 ~~~ 268 (274)
+..
T Consensus 99 ~~~ 101 (435)
T KOG0108|consen 99 KNA 101 (435)
T ss_pred chh
Confidence 543
No 61
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.54 E-value=1e-13 Score=94.62 Aligned_cols=74 Identities=41% Similarity=0.665 Sum_probs=69.2
Q ss_pred EEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEeEEEe
Q 024012 187 KLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVDV 261 (274)
Q Consensus 187 ~lfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~d~~~g~~rG~aFV~F~s~~~A~~Ai~~l~g~~l~G~~l~V~~ 261 (274)
+|+|+|||..+++++|+++|+.||.|..+.+..++.+ .++|+|||+|.+.++|..|++.+++..+.|+++.|.+
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~-~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDT-KSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCC-CcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 4899999999999999999999999999999988744 7799999999999999999999999999999999875
No 62
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.53 E-value=4.5e-14 Score=120.91 Aligned_cols=80 Identities=35% Similarity=0.673 Sum_probs=77.5
Q ss_pred ccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEeEEEeecC
Q 024012 185 TKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVDVAKT 264 (274)
Q Consensus 185 ~~~lfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~d~~~g~~rG~aFV~F~s~~~A~~Ai~~l~g~~l~G~~l~V~~a~~ 264 (274)
..+|||+|||..+++++|+++|.+||.|..+.+..|+.+|.++|||||+|.+.++|..|+..++|..|.|++|.|.++.+
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~~ 194 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQP 194 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeecccc
Confidence 69999999999999999999999999999999999988999999999999999999999999999999999999999763
No 63
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.53 E-value=4.6e-14 Score=126.85 Aligned_cols=175 Identities=17% Similarity=0.270 Sum_probs=118.4
Q ss_pred eeecCCCcceeEEecCCCCCCCCHHHHHHHHHHHHHhhhCCcccceEEEec-CCCCCCeEEeeeCCHHHHHHH-HCCCCc
Q 024012 68 LFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIYH-VSWQSNFGFCCELDDECAQEL-TGVPGV 145 (274)
Q Consensus 68 lf~vgnl~~~~~~~~~p~~~~~t~~~L~~~F~~~l~~~~G~v~~v~i~~~~-~g~srgfgFV~f~~~e~a~~a-~~~~g~ 145 (274)
|+ ||||=+ .+|+++|+..|+ .||.|..|.++++. +|+++|||||+|.+.++|++| ..|||.
T Consensus 281 l~-vgnLHf-----------Nite~~lr~ife-----pfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ar~a~e~lngf 343 (549)
T KOG0147|consen 281 LY-VGNLHF-----------NITEDMLRGIFE-----PFGKIENVQLTKDSETGRSKGFGFITFVNKEDARKALEQLNGF 343 (549)
T ss_pred hh-hccccc-----------CchHHHHhhhcc-----CcccceeeeeccccccccccCcceEEEecHHHHHHHHHHhccc
Confidence 66 999999 599999999999 55999999988875 999999999999999999666 677873
Q ss_pred eee-cCCC-------CCCC------CCCC------C---C--------------CCCCCCCCC-----------------
Q 024012 146 LSV-QPDE-------NFGS------ENKD------Y---G--------------GNNLQNSMV----------------- 171 (274)
Q Consensus 146 ~~~-~~~~-------~~~~------~~~~------~---~--------------~~~~~~~~~----------------- 171 (274)
... +... .... .... . . +..+...+.
T Consensus 344 elAGr~ikV~~v~~r~~~~~a~~~~~d~D~~d~~gl~~~~~g~~Ql~~kla~~~~~~~~s~~~~~l~~~~~~~~~~~~~~ 423 (549)
T KOG0147|consen 344 ELAGRLIKVSVVTERVDTKEAAVTQFDFDEDDRQGLSLGSGGRNQLMAKLAEGKGRSLPSTAISALLLLAKLASAAQFNG 423 (549)
T ss_pred eecCceEEEEEeeeecccccccccccccchhhccccccccccHHHHHHHHhccCCccccchhhhHHHhccccchHHhhcC
Confidence 111 0000 0000 0000 0 0 000000000
Q ss_pred --CCCCC----CCCCCCccccEEEEcCC--CCCCC--------HHHHHHHHhccCCeEEEEEEecCCCCCcceEEEEEeC
Q 024012 172 --PSDSS----EASPTQIKTKKLFVTGL--SFYTS--------EKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYT 235 (274)
Q Consensus 172 --~~~~~----~~~~~~~~~~~lfV~nL--p~~~t--------e~~L~~~F~~fG~i~~v~i~~d~~~g~~rG~aFV~F~ 235 (274)
+.... ..+.-..++.++.+.|+ |.+.| .+++.+.+++||.|.+|.|-.+ +-|+-||.|.
T Consensus 424 ~~~~~~~~p~~~~p~~~i~t~C~lL~nMFdpstete~n~d~eI~edV~Eec~k~g~v~hi~vd~n-----s~g~VYvrc~ 498 (549)
T KOG0147|consen 424 VVRVRSVDPADASPAFDIPTQCLLLSNMFDPSTETEPNWDQEIREDVIEECGKHGKVCHIFVDKN-----SAGCVYVRCP 498 (549)
T ss_pred CcCccccCccccccccCCccHHHHHhhcCCcccccCcchhhHHHHHHHHHHHhcCCeeEEEEccC-----CCceEEEecC
Confidence 00000 00011144567777776 22222 3678888999999999987543 3489999999
Q ss_pred CHHHHHHHHHHhCCceeCCEEeEEEeecC
Q 024012 236 TEEAASAALKEMNGKIINGWMIVVDVAKT 264 (274)
Q Consensus 236 s~~~A~~Ai~~l~g~~l~G~~l~V~~a~~ 264 (274)
+.+.|..|+.+|||..|.|+.|...|-.-
T Consensus 499 s~~~A~~a~~alhgrWF~gr~Ita~~~~~ 527 (549)
T KOG0147|consen 499 SAEAAGTAVKALHGRWFAGRMITAKYLPL 527 (549)
T ss_pred cHHHHHHHHHHHhhhhhccceeEEEEeeh
Confidence 99999999999999999999999988543
No 64
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.52 E-value=2.2e-14 Score=112.08 Aligned_cols=81 Identities=32% Similarity=0.450 Sum_probs=77.9
Q ss_pred cccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEeEEEeec
Q 024012 184 KTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVDVAK 263 (274)
Q Consensus 184 ~~~~lfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~d~~~g~~rG~aFV~F~s~~~A~~Ai~~l~g~~l~G~~l~V~~a~ 263 (274)
...+|||+||+..++++.|.++|-+.|+|+++.+++|+.+...+||||++|.++++|+-|++-||...|-|++|+|..+.
T Consensus 8 qd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~kas 87 (203)
T KOG0131|consen 8 QDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNKAS 87 (203)
T ss_pred CCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEecc
Confidence 37899999999999999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred C
Q 024012 264 T 264 (274)
Q Consensus 264 ~ 264 (274)
.
T Consensus 88 ~ 88 (203)
T KOG0131|consen 88 A 88 (203)
T ss_pred c
Confidence 3
No 65
>smart00361 RRM_1 RNA recognition motif.
Probab=99.51 E-value=1.1e-13 Score=94.76 Aligned_cols=62 Identities=23% Similarity=0.578 Sum_probs=56.5
Q ss_pred HHHHHHHHh----ccCCeEEEE-EEecCCC--CCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEeEEE
Q 024012 199 EKTLRAAFE----GFGELVEVK-IIMDKIS--KRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVD 260 (274)
Q Consensus 199 e~~L~~~F~----~fG~i~~v~-i~~d~~~--g~~rG~aFV~F~s~~~A~~Ai~~l~g~~l~G~~l~V~ 260 (274)
+++|+++|+ +||.|.++. |..++.+ +.++|||||+|.+.++|.+|++.|||..+.|+.|+++
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~~ 70 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKAE 70 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEeC
Confidence 578888998 999999995 7777766 8999999999999999999999999999999999863
No 66
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.50 E-value=1.6e-13 Score=89.75 Aligned_cols=56 Identities=38% Similarity=0.690 Sum_probs=51.2
Q ss_pred HHHHHhccCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEeEEEee
Q 024012 202 LRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVDVA 262 (274)
Q Consensus 202 L~~~F~~fG~i~~v~i~~d~~~g~~rG~aFV~F~s~~~A~~Ai~~l~g~~l~G~~l~V~~a 262 (274)
|.++|++||+|.++.+..+. +|+|||+|.+.++|.+|++.|||..++|++|+|+||
T Consensus 1 L~~~f~~fG~V~~i~~~~~~-----~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK-----RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS-----TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 68899999999999997653 579999999999999999999999999999999997
No 67
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=99.48 E-value=7.3e-13 Score=120.35 Aligned_cols=183 Identities=17% Similarity=0.227 Sum_probs=122.9
Q ss_pred eeeeecCCCcceeEEecCCCCCCCCHHHHHHHHHHHHHhhhCCcccceEEE-ecCCCCCCeEEeeeCCHHHH-HHHHCCC
Q 024012 66 TLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCI-YHVSWQSNFGFCCELDDECA-QELTGVP 143 (274)
Q Consensus 66 ~~lf~vgnl~~~~~~~~~p~~~~~t~~~L~~~F~~~l~~~~G~v~~v~i~~-~~~g~srgfgFV~f~~~e~a-~~a~~~~ 143 (274)
..+| +|+||. .+++.+++++-..+ |.++..++.. ..+|.++||||++|.++... +++.++|
T Consensus 290 ~ki~-v~~lp~-----------~l~~~q~~Ell~~f-----g~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLn 352 (500)
T KOG0120|consen 290 NKIF-VGGLPL-----------YLTEDQVKELLDSF-----GPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLN 352 (500)
T ss_pred chhh-hccCcC-----------ccCHHHHHHHHHhc-----ccchhheeecccccccccceeeeeeeCCcchhhhhcccc
Confidence 3466 999999 48999999987755 9999999666 56699999999999999999 6677788
Q ss_pred CceeecCCCCCC----CCCCCCCCCCCCC-CCCCCCCCCCCCCCccccEEEEcCC--CCCC-CH-------HHHHHHHhc
Q 024012 144 GVLSVQPDENFG----SENKDYGGNNLQN-SMVPSDSSEASPTQIKTKKLFVTGL--SFYT-SE-------KTLRAAFEG 208 (274)
Q Consensus 144 g~~~~~~~~~~~----~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~lfV~nL--p~~~-te-------~~L~~~F~~ 208 (274)
|+.......... ............. ...............++..|.+.|+ |..+ ++ |+++.-+++
T Consensus 353 Gm~lgd~~lvvq~A~~g~~~~~~~~~~~~~~~~~i~~~~~q~~g~~t~Vl~L~n~Vt~deLkdd~EyeeIlEdvr~ec~k 432 (500)
T KOG0120|consen 353 GMQLGDKKLVVQRAIVGASNANVNFNISQSQVPGIPLLMTQMAGIPTEVLCLTNVVTPDELKDDEEYEEILEDVRTECAK 432 (500)
T ss_pred hhhhcCceeEeehhhccchhccccCCccccccccchhhhcccCCCcchhhhhhhcCCHHHhcchHHHHHHHHHHHHHhcc
Confidence 874331111100 0000000100000 0111111111333344666666665 1111 11 456677899
Q ss_pred cCCeEEEEEEec-C--CCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEeEEEeecCC
Q 024012 209 FGELVEVKIIMD-K--ISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVDVAKTT 265 (274)
Q Consensus 209 fG~i~~v~i~~d-~--~~g~~rG~aFV~F~s~~~A~~Ai~~l~g~~l~G~~l~V~~a~~~ 265 (274)
||.|..|.|+++ . ...-+.|.-||+|.+.+++++|.++|+|.+++||.|..+|-...
T Consensus 433 ~g~v~~v~ipr~~~~~~~~~G~GkVFVefas~ed~qrA~~~L~GrKF~nRtVvtsYydeD 492 (500)
T KOG0120|consen 433 FGAVRSVEIPRPYPDENPVPGTGKVFVEFADTEDSQRAMEELTGRKFANRTVVASYYDED 492 (500)
T ss_pred cCceeEEecCCCCCCCCcCCCcccEEEEecChHHHHHHHHHccCceeCCcEEEEEecCHH
Confidence 999999999988 2 12345678899999999999999999999999999999986654
No 68
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.48 E-value=1.5e-12 Score=114.12 Aligned_cols=192 Identities=18% Similarity=0.176 Sum_probs=136.5
Q ss_pred CCCCCCCCCceeeeecCCCcceeEEecCCCCCCCCHHHHHHHHHHHHHhhhCCcccceEEEecCCCCCCeEEeeeCCHHH
Q 024012 56 SNPWNSQIGTTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIYHVSWQSNFGFCCELDDEC 135 (274)
Q Consensus 56 ~~~~~~~~~s~~lf~vgnl~~~~~~~~~p~~~~~t~~~L~~~F~~~l~~~~G~v~~v~i~~~~~g~srgfgFV~f~~~e~ 135 (274)
+...++...-+..| |.|+|| ++.+++|+++|.+. .|+|.-|.+..+..|++||+|.|+|.++|.
T Consensus 35 s~~gn~~~r~R~vf-ItNIpy-----------d~rWqdLKdLvrek----vGev~yveLl~D~~GK~rGcavVEFk~~E~ 98 (608)
T KOG4212|consen 35 SQGGNVAARDRSVF-ITNIPY-----------DYRWQDLKDLVREK----VGEVEYVELLFDESGKARGCAVVEFKDPEN 98 (608)
T ss_pred CCCCCcccccceEE-EecCcc-----------hhhhHhHHHHHHHh----cCceEeeeeecccCCCcCCceEEEeeCHHH
Confidence 44555666777799 999999 79999999999864 388888888889999999999999999999
Q ss_pred HHHHHC-CC-----Cc-eeecCCCCCCC----------------------CCCCCC---------------------CCC
Q 024012 136 AQELTG-VP-----GV-LSVQPDENFGS----------------------ENKDYG---------------------GNN 165 (274)
Q Consensus 136 a~~a~~-~~-----g~-~~~~~~~~~~~----------------------~~~~~~---------------------~~~ 165 (274)
+++|++ || |. +.+...+.... ..+... .+.
T Consensus 99 ~qKa~E~lnk~~~~GR~l~vKEd~d~q~~~~~~~~r~g~~~f~~~~~~q~G~~~l~~~g~ggG~~~Rg~~~~D~Dr~sr~ 178 (608)
T KOG4212|consen 99 VQKALEKLNKYEVNGRELVVKEDHDEQRDQYGRIVRDGGGGFGGGGGVQGGNGGLNGGGGGGGDRDRGFSRRDDDRLSRR 178 (608)
T ss_pred HHHHHHHhhhccccCceEEEeccCchhhhhhhheeeccCcccccCcceecccccccccCCCCccccCCCCcccccccccc
Confidence 976654 33 31 22211111000 000000 000
Q ss_pred CCCCCCC-----------------CCCCCCCCCCccccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCcce
Q 024012 166 LQNSMVP-----------------SDSSEASPTQIKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKG 228 (274)
Q Consensus 166 ~~~~~~~-----------------~~~~~~~~~~~~~~~lfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~d~~~g~~rG 228 (274)
....... .....-...++...++||.||.+.+..+.|.+.|.--|.|+.+.+-.|+ .|.++|
T Consensus 179 ~~t~t~~~~~~~~~~~~lfgl~~~Flr~~h~f~pPl~~k~fvanl~~~vg~~kL~qvfgmAGkv~~vdf~idK-eG~s~G 257 (608)
T KOG4212|consen 179 NNTNTMSNDYNNSSNYNLFGLSASFLRSLHIFSPPLHNKVFVANLDYKVGNKKLKQVFGMAGKVQSVDFSIDK-EGNSRG 257 (608)
T ss_pred cCccccccccccchhhhcccchhhhhhhccCCCCCccceeeeeccccccchHHHHHHhccceeeeeeceeecc-ccccCC
Confidence 0000000 0000001123446789999999999999999999999999999999998 579999
Q ss_pred EEEEEeCCHHHHHHHHHHhCCceeCCEEeEEEeecC
Q 024012 229 YAFIEYTTEEAASAALKEMNGKIINGWMIVVDVAKT 264 (274)
Q Consensus 229 ~aFV~F~s~~~A~~Ai~~l~g~~l~G~~l~V~~a~~ 264 (274)
+|.++|+.+-+|-+||..|++.-+..++..+.+..-
T Consensus 258 ~~vi~y~hpveavqaIsml~~~g~~~~~~~~Rl~~~ 293 (608)
T KOG4212|consen 258 FAVIEYDHPVEAVQAISMLDRQGLFDRRMTVRLDRI 293 (608)
T ss_pred eeEEEecchHHHHHHHHhhccCCCccccceeecccc
Confidence 999999999999999999998777778877776543
No 69
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=99.41 E-value=1.1e-11 Score=106.02 Aligned_cols=186 Identities=12% Similarity=0.201 Sum_probs=125.2
Q ss_pred CCCCCCC-ceeeeecCCCcceeEEecCCCCCCCCHHHHHHHHHHHHHhhhCCcc--------cceEEEecCCCCCCeEEe
Q 024012 58 PWNSQIG-TTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEK--------DAQMCIYHVSWQSNFGFC 128 (274)
Q Consensus 58 ~~~~~~~-s~~lf~vgnl~~~~~~~~~p~~~~~t~~~L~~~F~~~l~~~~G~v~--------~v~i~~~~~g~srgfgFV 128 (274)
|.++.+. -+.++ |.|||. ++|-+++.++|.+| |.|. -|++.+...|+-+|=|.|
T Consensus 126 ~~~~~~~~Nt~VY-VsgLP~-----------DiT~dE~~~~~sKc-----GiI~~d~~t~epk~KlYrd~~G~lKGDaLc 188 (382)
T KOG1548|consen 126 WFNPEPKVNTSVY-VSGLPL-----------DITVDEFAEVMSKC-----GIIMRDPQTGEPKVKLYRDNQGKLKGDALC 188 (382)
T ss_pred ccCcccccCceEE-ecCCCC-----------cccHHHHHHHHHhc-----ceEeccCCCCCeeEEEEecCCCCccCceEE
Confidence 4443333 33466 999999 79999999999998 8772 234566778999999999
Q ss_pred eeCCHHHHHHHHCC-CC------ceeecCCCCCCCCCCCCCCCC----CCCCC-----C-----CCCCCCCCCCCccccE
Q 024012 129 CELDDECAQELTGV-PG------VLSVQPDENFGSENKDYGGNN----LQNSM-----V-----PSDSSEASPTQIKTKK 187 (274)
Q Consensus 129 ~f~~~e~a~~a~~~-~g------~~~~~~~~~~~~~~~~~~~~~----~~~~~-----~-----~~~~~~~~~~~~~~~~ 187 (274)
+|.-.|++.-|+++ ++ .+.|.....-........+.. ..... . .+.. .........++
T Consensus 189 ~y~K~ESVeLA~~ilDe~~~rg~~~rVerAkfq~Kge~~~~~k~k~k~~~~kk~~k~q~k~~dw~pd~-~~~sk~r~~~t 267 (382)
T KOG1548|consen 189 CYIKRESVELAIKILDEDELRGKKLRVERAKFQMKGEYDASKKEKGKCKDKKKLKKQQQKLLDWRPDR-DDPSKARADRT 267 (382)
T ss_pred EeecccHHHHHHHHhCcccccCcEEEEehhhhhhccCcCcccccccccccHHHHHHHHHhhcccCCCc-cccccccCCcE
Confidence 99999999666654 43 233333222111111111110 00000 0 0111 22334455788
Q ss_pred EEEcCCCC----CCC-------HHHHHHHHhccCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEE
Q 024012 188 LFVTGLSF----YTS-------EKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWM 256 (274)
Q Consensus 188 lfV~nLp~----~~t-------e~~L~~~F~~fG~i~~v~i~~d~~~g~~rG~aFV~F~s~~~A~~Ai~~l~g~~l~G~~ 256 (274)
|.+.|+=. ..+ .++|++-+++||.|.+|.|.- ..+.|.+-|.|.+.++|..||+.|+|+.++||.
T Consensus 268 Vi~kn~Ftp~~~~~~~~l~~dlkedl~eec~K~G~v~~vvv~d----~hPdGvvtV~f~n~eeA~~ciq~m~GR~fdgRq 343 (382)
T KOG1548|consen 268 VILKNMFTPEDFEKNPDLLNDLKEDLTEECEKFGQVRKVVVYD----RHPDGVVTVSFRNNEEADQCIQTMDGRWFDGRQ 343 (382)
T ss_pred EEeeecCCHHHhccCHHHHHHHHHHHHHHHHHhCCcceEEEec----cCCCceeEEEeCChHHHHHHHHHhcCeeecceE
Confidence 99999821 223 366778899999999997763 357889999999999999999999999999999
Q ss_pred eEEEeecCC
Q 024012 257 IVVDVAKTT 265 (274)
Q Consensus 257 l~V~~a~~~ 265 (274)
|..+.-..+
T Consensus 344 l~A~i~DG~ 352 (382)
T KOG1548|consen 344 LTASIWDGK 352 (382)
T ss_pred EEEEEeCCc
Confidence 998876543
No 70
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=99.41 E-value=8.1e-12 Score=100.78 Aligned_cols=65 Identities=20% Similarity=0.371 Sum_probs=55.1
Q ss_pred ccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeC
Q 024012 185 TKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIIN 253 (274)
Q Consensus 185 ~~~lfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~d~~~g~~rG~aFV~F~s~~~A~~Ai~~l~g~~l~ 253 (274)
..+|||.||..+++|++|+.+|+.|......+|... . .-..||++|++.+.|..|+..|+|..|.
T Consensus 210 cstlfianl~~~~~ed~l~~~~~~~~gf~~l~~~~~--~--g~~vaf~~~~~~~~at~am~~lqg~~~s 274 (284)
T KOG1457|consen 210 CSTLFIANLGPNCTEDELKQLLSRYPGFHILKIRAR--G--GMPVAFADFEEIEQATDAMNHLQGNLLS 274 (284)
T ss_pred hhhHhhhccCCCCCHHHHHHHHHhCCCceEEEEecC--C--CcceEeecHHHHHHHHHHHHHhhcceec
Confidence 358999999999999999999999987776666422 2 3448999999999999999999998774
No 71
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.40 E-value=6.7e-13 Score=104.05 Aligned_cols=79 Identities=19% Similarity=0.364 Sum_probs=71.6
Q ss_pred cccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEeEEEeec
Q 024012 184 KTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVDVAK 263 (274)
Q Consensus 184 ~~~~lfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~d~~~g~~rG~aFV~F~s~~~A~~Ai~~l~g~~l~G~~l~V~~a~ 263 (274)
..++|||+|||.++.+.+|+++|.+||.|.+|.+...+ ..-+||||+|++.-+|+.||..-+|..++|.+|+|+++.
T Consensus 5 ~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r~---g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfpr 81 (241)
T KOG0105|consen 5 NSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNRP---GPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFPR 81 (241)
T ss_pred ccceEEecCCCcchhhccHHHHHhhhcceEEEEeccCC---CCCCeeEEEecCccchhhhhhcccccccCcceEEEEecc
Confidence 37789999999999999999999999999999876443 335699999999999999999999999999999999998
Q ss_pred CC
Q 024012 264 TT 265 (274)
Q Consensus 264 ~~ 265 (274)
.-
T Consensus 82 gg 83 (241)
T KOG0105|consen 82 GG 83 (241)
T ss_pred CC
Confidence 65
No 72
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.39 E-value=5.7e-13 Score=113.93 Aligned_cols=87 Identities=29% Similarity=0.466 Sum_probs=82.1
Q ss_pred CCCccccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEeEE
Q 024012 180 PTQIKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVV 259 (274)
Q Consensus 180 ~~~~~~~~lfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~d~~~g~~rG~aFV~F~s~~~A~~Ai~~l~g~~l~G~~l~V 259 (274)
...++.+.|||.-|.+-++.++|.-+|+.||.|.++.|++|..||.+-.||||+|++.+++++|.-+|++..|++++|.|
T Consensus 234 d~~PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHV 313 (479)
T KOG0415|consen 234 DVKPPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHV 313 (479)
T ss_pred ccCCCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEe
Confidence 34456889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeecCCC
Q 024012 260 DVAKTTP 266 (274)
Q Consensus 260 ~~a~~~~ 266 (274)
+|+++-.
T Consensus 314 DFSQSVs 320 (479)
T KOG0415|consen 314 DFSQSVS 320 (479)
T ss_pred ehhhhhh
Confidence 9998754
No 73
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.38 E-value=3.9e-13 Score=115.42 Aligned_cols=80 Identities=35% Similarity=0.622 Sum_probs=76.1
Q ss_pred ccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEeEEEeecC
Q 024012 185 TKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVDVAKT 264 (274)
Q Consensus 185 ~~~lfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~d~~~g~~rG~aFV~F~s~~~A~~Ai~~l~g~~l~G~~l~V~~a~~ 264 (274)
-++||||.+.+.+.|+.|+..|.+||+|+++.+..|+.|+++||||||+|+-+|.|+-|++.|||..++||.|+|..-..
T Consensus 113 McRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgrPsN 192 (544)
T KOG0124|consen 113 MCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPSN 192 (544)
T ss_pred hHheeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCccccccCCCC
Confidence 56899999999999999999999999999999999999999999999999999999999999999999999999985443
No 74
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.37 E-value=1.1e-11 Score=106.02 Aligned_cols=169 Identities=19% Similarity=0.206 Sum_probs=110.7
Q ss_pred ceeeeecCCCcceeEEecCCCCCCCCHHHHHHHHHHHHHhhhCCcccceEEEe-cCCCCCCeEEeeeCCHHHHHHHHC-C
Q 024012 65 TTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIY-HVSWQSNFGFCCELDDECAQELTG-V 142 (274)
Q Consensus 65 s~~lf~vgnl~~~~~~~~~p~~~~~t~~~L~~~F~~~l~~~~G~v~~v~i~~~-~~g~srgfgFV~f~~~e~a~~a~~-~ 142 (274)
..+|| |||||. ++|+++|.++|.++ |.+..+++..+ .+|.++|||||+|.+.++|..|+. +
T Consensus 115 ~~~l~-v~nL~~-----------~~~~~~l~~~F~~~-----g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~ 177 (306)
T COG0724 115 NNTLF-VGNLPY-----------DVTEEDLRELFKKF-----GPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEEL 177 (306)
T ss_pred CceEE-EeCCCC-----------CCCHHHHHHHHHhc-----CceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHc
Confidence 47899 999998 79999999999988 99999998886 589999999999999999955554 5
Q ss_pred CCceee-cCCCCCCCC--CCCCCCCCC--CCCCCCCCCCCCCCCCccccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEE
Q 024012 143 PGVLSV-QPDENFGSE--NKDYGGNNL--QNSMVPSDSSEASPTQIKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKI 217 (274)
Q Consensus 143 ~g~~~~-~~~~~~~~~--~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~te~~L~~~F~~fG~i~~v~i 217 (274)
+|.... ++....... ......... .....................+++.+++..++..++...|..+|.+....+
T Consensus 178 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (306)
T COG0724 178 NGKELEGRPLRVQKAQPASQPRSELSNNLDASFAKKLSRGKALLLEKSDNLYVGNLPLKTAEEELADLFKSRGDIVRASL 257 (306)
T ss_pred CCCeECCceeEeeccccccccccccccccchhhhccccccccccccccceeeccccccccchhHHHHhccccccceeeec
Confidence 654221 111111100 000000000 000000111222333445788999999999999999999999999987777
Q ss_pred EecCCCCCcceEEEEEeCCHHHHHHHHHHhCCc
Q 024012 218 IMDKISKRSKGYAFIEYTTEEAASAALKEMNGK 250 (274)
Q Consensus 218 ~~d~~~g~~rG~aFV~F~s~~~A~~Ai~~l~g~ 250 (274)
.............++.+.....+..+.......
T Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (306)
T COG0724 258 PPSKDGKIPKSRSFVGNEASKDALESNSRGNKK 290 (306)
T ss_pred cCCCCCcccccccccchhHHHhhhhhhccccce
Confidence 666544444445555555555555555443333
No 75
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.36 E-value=1.2e-12 Score=109.34 Aligned_cols=74 Identities=31% Similarity=0.591 Sum_probs=70.1
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEeEEEeecCC
Q 024012 186 KKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVDVAKTT 265 (274)
Q Consensus 186 ~~lfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~d~~~g~~rG~aFV~F~s~~~A~~Ai~~l~g~~l~G~~l~V~~a~~~ 265 (274)
.+|||+|||..+++.+|+.+|++||.|.++.|+.+ ||||..++...|+-||..|||.+|+|..|.|+-++++
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygkVlECDIvKN--------YgFVHiEdktaaedairNLhgYtLhg~nInVeaSksK 74 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGKVLECDIVKN--------YGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSK 74 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCceEeeeeecc--------cceEEeecccccHHHHhhcccceecceEEEEEecccc
Confidence 47999999999999999999999999999999966 9999999999999999999999999999999999987
Q ss_pred CC
Q 024012 266 PK 267 (274)
Q Consensus 266 ~~ 267 (274)
.+
T Consensus 75 sk 76 (346)
T KOG0109|consen 75 SK 76 (346)
T ss_pred CC
Confidence 43
No 76
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.36 E-value=2.6e-12 Score=104.15 Aligned_cols=81 Identities=25% Similarity=0.456 Sum_probs=74.4
Q ss_pred cccEEEEcCCCCCCCHHHHHH----HHhccCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEeEE
Q 024012 184 KTKKLFVTGLSFYTSEKTLRA----AFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVV 259 (274)
Q Consensus 184 ~~~~lfV~nLp~~~te~~L~~----~F~~fG~i~~v~i~~d~~~g~~rG~aFV~F~s~~~A~~Ai~~l~g~~l~G~~l~V 259 (274)
++.+|||.||+..+..++|+. +|++||.|.+|.... +.+.||-|||.|.+.+.|..|+.+|+|..+-|+++++
T Consensus 8 pn~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~k---t~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mri 84 (221)
T KOG4206|consen 8 PNGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFK---TPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMRI 84 (221)
T ss_pred CCceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecC---CCCccCceEEEecChhHHHHHHHHhcCCcccCchhhe
Confidence 345999999999999999888 999999999997764 5688999999999999999999999999999999999
Q ss_pred EeecCCCC
Q 024012 260 DVAKTTPK 267 (274)
Q Consensus 260 ~~a~~~~~ 267 (274)
.||+.+..
T Consensus 85 qyA~s~sd 92 (221)
T KOG4206|consen 85 QYAKSDSD 92 (221)
T ss_pred ecccCccc
Confidence 99998753
No 77
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.35 E-value=8.4e-13 Score=109.06 Aligned_cols=85 Identities=29% Similarity=0.444 Sum_probs=76.9
Q ss_pred ccccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeC---CEEeEE
Q 024012 183 IKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIIN---GWMIVV 259 (274)
Q Consensus 183 ~~~~~lfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~d~~~g~~rG~aFV~F~s~~~A~~Ai~~l~g~~l~---G~~l~V 259 (274)
...++||||-|...-+|||++.+|..||.|.++.+.+.. .|.+||+|||.|.+..+|..||..|||..-. ...|.|
T Consensus 17 ~~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~-dg~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGASSSLVV 95 (371)
T KOG0146|consen 17 GDDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGP-DGNSKGCAFVKFSSHAEAQAAINALHGSQTMPGASSSLVV 95 (371)
T ss_pred ccchhhhhhhhcccccHHHHHHHhcccCCcceeEEecCC-CCCCCCceEEEeccchHHHHHHHHhcccccCCCCccceEE
Confidence 357899999999999999999999999999999999987 8999999999999999999999999997643 367999
Q ss_pred EeecCCCCC
Q 024012 260 DVAKTTPKY 268 (274)
Q Consensus 260 ~~a~~~~~~ 268 (274)
.||+..+.+
T Consensus 96 K~ADTdkER 104 (371)
T KOG0146|consen 96 KFADTDKER 104 (371)
T ss_pred EeccchHHH
Confidence 999987643
No 78
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=99.34 E-value=4.4e-12 Score=101.30 Aligned_cols=86 Identities=26% Similarity=0.401 Sum_probs=78.8
Q ss_pred CCCccccEEEEcCCCCCCCHHHHHHHHhcc-CCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEeE
Q 024012 180 PTQIKTKKLFVTGLSFYTSEKTLRAAFEGF-GELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIV 258 (274)
Q Consensus 180 ~~~~~~~~lfV~nLp~~~te~~L~~~F~~f-G~i~~v~i~~d~~~g~~rG~aFV~F~s~~~A~~Ai~~l~g~~l~G~~l~ 258 (274)
+.......+||+.+|..+.+.++..+|.+| |.+..+++.|++.||.|+|||||+|++.+.|.-|-+.||++.+.|+.|.
T Consensus 44 p~~~~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~ 123 (214)
T KOG4208|consen 44 PEQEIEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLE 123 (214)
T ss_pred CccCCccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheee
Confidence 344456789999999999999999999998 7788889999999999999999999999999999999999999999999
Q ss_pred EEeecCC
Q 024012 259 VDVAKTT 265 (274)
Q Consensus 259 V~~a~~~ 265 (274)
|.+-.|.
T Consensus 124 c~vmppe 130 (214)
T KOG4208|consen 124 CHVMPPE 130 (214)
T ss_pred eEEeCch
Confidence 9987765
No 79
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.33 E-value=5.3e-12 Score=110.77 Aligned_cols=83 Identities=23% Similarity=0.450 Sum_probs=76.0
Q ss_pred cccEEEEcCCCCCCCHHHHHHHHh-ccCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEeEEEee
Q 024012 184 KTKKLFVTGLSFYTSEKTLRAAFE-GFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVDVA 262 (274)
Q Consensus 184 ~~~~lfV~nLp~~~te~~L~~~F~-~fG~i~~v~i~~d~~~g~~rG~aFV~F~s~~~A~~Ai~~l~g~~l~G~~l~V~~a 262 (274)
..+.+||.|||+++.+++|+++|. +.|+|+.|.++.|. +|++||+|.|+|+++|.+++|++.||.+.+.||+|.|.-.
T Consensus 43 r~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D~-~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~vKEd 121 (608)
T KOG4212|consen 43 RDRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFDE-SGKARGCAVVEFKDPENVQKALEKLNKYEVNGRELVVKED 121 (608)
T ss_pred ccceEEEecCcchhhhHhHHHHHHHhcCceEeeeeeccc-CCCcCCceEEEeeCHHHHHHHHHHhhhccccCceEEEecc
Confidence 356699999999999999999996 67999999999998 8999999999999999999999999999999999999876
Q ss_pred cCCCC
Q 024012 263 KTTPK 267 (274)
Q Consensus 263 ~~~~~ 267 (274)
...++
T Consensus 122 ~d~q~ 126 (608)
T KOG4212|consen 122 HDEQR 126 (608)
T ss_pred Cchhh
Confidence 65443
No 80
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.33 E-value=3.9e-12 Score=103.51 Aligned_cols=71 Identities=17% Similarity=0.210 Sum_probs=59.5
Q ss_pred CCCCceeeeecCCCcceeEEecCCCCCCCCHHHHHHHHHHHHHhhhCCcccceEEE-ecCCCCCCeEEeeeCCHHHHHHH
Q 024012 61 SQIGTTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCI-YHVSWQSNFGFCCELDDECAQEL 139 (274)
Q Consensus 61 ~~~~s~~lf~vgnl~~~~~~~~~p~~~~~t~~~L~~~F~~~l~~~~G~v~~v~i~~-~~~g~srgfgFV~f~~~e~a~~a 139 (274)
.++.-+.+| ||+|++ +++.++|+++|+++ |+|.++.|+. +.+|+|||||||+|.|.|+|.+|
T Consensus 8 ~DT~~TKif-VggL~w-----------~T~~~~l~~yFeqf-----GeI~eavvitd~~t~rskGyGfVTf~d~~aa~rA 70 (247)
T KOG0149|consen 8 GDTTFTKIF-VGGLAW-----------ETHKETLRRYFEQF-----GEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRA 70 (247)
T ss_pred CCceEEEEE-EcCccc-----------ccchHHHHHHHHHh-----CceEEEEEEeccCCccccceeeEEeecHHHHHHH
Confidence 455667799 999998 79999999999988 9999999776 67899999999999999999777
Q ss_pred HCC-CCceee
Q 024012 140 TGV-PGVLSV 148 (274)
Q Consensus 140 ~~~-~g~~~~ 148 (274)
.+- |-++..
T Consensus 71 c~dp~piIdG 80 (247)
T KOG0149|consen 71 CKDPNPIIDG 80 (247)
T ss_pred hcCCCCcccc
Confidence 654 434433
No 81
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.32 E-value=4.4e-12 Score=99.07 Aligned_cols=65 Identities=25% Similarity=0.361 Sum_probs=57.2
Q ss_pred CceeeeecCCCcceeEEecCCCCCCCCHHHHHHHHHHHHHhhhCCcccceEEEe-cCCCCCCeEEeeeCCHHHHHHHHC-
Q 024012 64 GTTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIY-HVSWQSNFGFCCELDDECAQELTG- 141 (274)
Q Consensus 64 ~s~~lf~vgnl~~~~~~~~~p~~~~~t~~~L~~~F~~~l~~~~G~v~~v~i~~~-~~g~srgfgFV~f~~~e~a~~a~~- 141 (274)
.++.|| |+|||. ++|+++|+++|.++ |.|.+++++.+ .+++++|||||+|.+.++|++|++
T Consensus 33 ~~~~lf-VgnL~~-----------~~te~~L~~~F~~~-----G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~ 95 (144)
T PLN03134 33 MSTKLF-IGGLSW-----------GTDDASLRDAFAHF-----GDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISE 95 (144)
T ss_pred CCCEEE-EeCCCC-----------CCCHHHHHHHHhcC-----CCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHH
Confidence 456799 999999 69999999999977 99999998874 579999999999999999977774
Q ss_pred CCCc
Q 024012 142 VPGV 145 (274)
Q Consensus 142 ~~g~ 145 (274)
|++.
T Consensus 96 lng~ 99 (144)
T PLN03134 96 MDGK 99 (144)
T ss_pred cCCC
Confidence 7764
No 82
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=99.29 E-value=1.6e-11 Score=111.64 Aligned_cols=185 Identities=18% Similarity=0.293 Sum_probs=132.6
Q ss_pred eeecCCCcceeEEecCCCCCCCCHHHHHHHHHHHHHhhhCCccc--ceEEEecCCCCCCeEEeeeCCHHHHHHHHCCCCc
Q 024012 68 LFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKD--AQMCIYHVSWQSNFGFCCELDDECAQELTGVPGV 145 (274)
Q Consensus 68 lf~vgnl~~~~~~~~~p~~~~~t~~~L~~~F~~~l~~~~G~v~~--v~i~~~~~g~srgfgFV~f~~~e~a~~a~~~~g~ 145 (274)
+. ++++|. .++++.+..+|.+.+-..-..... -.+........++|+|++|.+.+.|..++.+++.
T Consensus 178 ~~-v~~~~~-----------~~~e~~~~~f~~~~~~~~gl~~~~~g~~~~s~~~n~~~nfa~ie~~s~~~at~~~~~~~~ 245 (500)
T KOG0120|consen 178 LY-VGNIPF-----------TSNEESMMSFFNSRMHASGLNQAPDGPSFVSVQLNLEKNFAFIEFRSISEATEAMALDGI 245 (500)
T ss_pred hc-ccccCC-----------ccCcHhhhhhhhhhhhhcccccCCCCCceeeeeecccccceeEEecCCCchhhhhcccch
Confidence 55 889888 799999999999753322122211 1133345667799999999999999888888774
Q ss_pred e------eecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEe
Q 024012 146 L------SVQPDENFGSENKDYGGNNLQNSMVPSDSSEASPTQIKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIM 219 (274)
Q Consensus 146 ~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~ 219 (274)
. .++..+................ .-..............++||+|||..+++.+++++...||.+....+..
T Consensus 246 ~f~g~~~~~~r~~d~~~~p~~~~~~~~~~--~~~~~~~~t~~~~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~ 323 (500)
T KOG0120|consen 246 IFEGRPLKIRRPHDYQPVPGITLSPSQLG--KVGLLPASTDVPDSPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVK 323 (500)
T ss_pred hhCCCCceecccccccCCccchhhhcccc--ccCCcccccCcccccchhhhccCcCccCHHHHHHHHHhcccchhheeec
Confidence 2 2222222211111111100000 0011111233334577899999999999999999999999999999999
Q ss_pred cCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEeEEEeecCCC
Q 024012 220 DKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVDVAKTTP 266 (274)
Q Consensus 220 d~~~g~~rG~aFV~F~s~~~A~~Ai~~l~g~~l~G~~l~V~~a~~~~ 266 (274)
|..+|.++||||-+|.+...+..|+..|||..++++.|.|..|-...
T Consensus 324 d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~A~~g~ 370 (500)
T KOG0120|consen 324 DSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQRAIVGA 370 (500)
T ss_pred ccccccccceeeeeeeCCcchhhhhcccchhhhcCceeEeehhhccc
Confidence 99999999999999999999999999999999999999999887643
No 83
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=99.27 E-value=6.2e-12 Score=108.62 Aligned_cols=178 Identities=16% Similarity=0.195 Sum_probs=133.5
Q ss_pred ceeeeecCCCcceeEEecCCCCCCCCHHHHHHHHHHHHHhhhCCcccceEEE-ecCCCCCCeEEeeeCCHHHHHHHHCCC
Q 024012 65 TTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCI-YHVSWQSNFGFCCELDDECAQELTGVP 143 (274)
Q Consensus 65 s~~lf~vgnl~~~~~~~~~p~~~~~t~~~L~~~F~~~l~~~~G~v~~v~i~~-~~~g~srgfgFV~f~~~e~a~~a~~~~ 143 (274)
..++| +|++.. .+.+.+...++.+. |...++.+.. .....++||+.+.|+..+.+.+++.+.
T Consensus 88 ~~~~f-~g~~s~-----------~~e~~~~~~~~~~~-----g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s 150 (285)
T KOG4210|consen 88 SSTFF-VGELSE-----------NIEESEDDNFSSEA-----GLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALEES 150 (285)
T ss_pred ccccc-cccccc-----------chhhccccccchhh-----cCcccchhhhhccccccccceeeccccHHHHHHHHHhh
Confidence 45566 999999 47777788888877 8888888665 678889999999999999999998876
Q ss_pred Cc-eeecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccEEE-EcCCCCCCCHHHHHHHHhccCCeEEEEEEecC
Q 024012 144 GV-LSVQPDENFGSENKDYGGNNLQNSMVPSDSSEASPTQIKTKKLF-VTGLSFYTSEKTLRAAFEGFGELVEVKIIMDK 221 (274)
Q Consensus 144 g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lf-V~nLp~~~te~~L~~~F~~fG~i~~v~i~~d~ 221 (274)
+. ......... ....... ................++| |+++++.+++++|+.+|..+|.|..+++..++
T Consensus 151 ~~~~~~~~~~~~-----dl~~~~~----~~~~n~~~~~~~~~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~ 221 (285)
T KOG4210|consen 151 GSKVLDGNKGEK-----DLNTRRG----LRPKNKLSRLSSGPSDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDE 221 (285)
T ss_pred hccccccccccC-----ccccccc----ccccchhcccccCccccceeecccccccchHHHhhhccCcCcceeeccCCCC
Confidence 53 211111100 0000000 0000001011112244555 99999999999999999999999999999999
Q ss_pred CCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEeEEEeecCCCCCC
Q 024012 222 ISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVDVAKTTPKYS 269 (274)
Q Consensus 222 ~~g~~rG~aFV~F~s~~~A~~Ai~~l~g~~l~G~~l~V~~a~~~~~~~ 269 (274)
.++..+|||+|.|.+...+..|+.. +...+.|+++.+.+..+.+...
T Consensus 222 ~s~~~kg~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 268 (285)
T KOG4210|consen 222 ESGDSKGFAYVDFSAGNSKKLALND-QTRSIGGRPLRLEEDEPRPKSD 268 (285)
T ss_pred CccchhhhhhhhhhhchhHHHHhhc-ccCcccCcccccccCCCCcccc
Confidence 9999999999999999999999977 8999999999999999886543
No 84
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.27 E-value=2.1e-11 Score=104.25 Aligned_cols=81 Identities=31% Similarity=0.550 Sum_probs=71.7
Q ss_pred CCCCccccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHh-CCceeCCEEe
Q 024012 179 SPTQIKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEM-NGKIINGWMI 257 (274)
Q Consensus 179 ~~~~~~~~~lfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~d~~~g~~rG~aFV~F~s~~~A~~Ai~~l-~g~~l~G~~l 257 (274)
++.+....+|||+||-..++|.+|+++|-+||+|.++.+... +|+|||+|.+.++|+.|..++ +...|+|++|
T Consensus 222 pPeD~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~------~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl 295 (377)
T KOG0153|consen 222 PPEDTSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPR------KGCAFVTFTTREAAEKAAEKSFNKLVINGFRL 295 (377)
T ss_pred CCcccceeEEEecccccchhHHHHHHHHhhcCCeeeEEeecc------cccceeeehhhHHHHHHHHhhcceeeecceEE
Confidence 455566789999999999999999999999999999998854 569999999999999888766 6667899999
Q ss_pred EEEeecCC
Q 024012 258 VVDVAKTT 265 (274)
Q Consensus 258 ~V~~a~~~ 265 (274)
.|.|+.+.
T Consensus 296 ~i~Wg~~~ 303 (377)
T KOG0153|consen 296 KIKWGRPK 303 (377)
T ss_pred EEEeCCCc
Confidence 99999993
No 85
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.22 E-value=8.1e-12 Score=84.95 Aligned_cols=62 Identities=18% Similarity=0.247 Sum_probs=54.9
Q ss_pred eeecCCCcceeEEecCCCCCCCCHHHHHHHHHHHHHhhhCCcccceEEEecCCCCCCeEEeeeCCHHHHHHHHC-CCCce
Q 024012 68 LFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIYHVSWQSNFGFCCELDDECAQELTG-VPGVL 146 (274)
Q Consensus 68 lf~vgnl~~~~~~~~~p~~~~~t~~~L~~~F~~~l~~~~G~v~~v~i~~~~~g~srgfgFV~f~~~e~a~~a~~-~~g~~ 146 (274)
|| |+|||. ++|+++|+++|.++ |.+..+.++.+..+.++|||||+|.+.++|++|++ ++|..
T Consensus 1 l~-v~nlp~-----------~~t~~~l~~~f~~~-----g~i~~~~~~~~~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~ 63 (70)
T PF00076_consen 1 LY-VGNLPP-----------DVTEEELRDFFSQF-----GKIESIKVMRNSSGKSKGYAFVEFESEEDAEKALEELNGKK 63 (70)
T ss_dssp EE-EESETT-----------TSSHHHHHHHHHTT-----STEEEEEEEEETTSSEEEEEEEEESSHHHHHHHHHHHTTEE
T ss_pred cE-EcCCCC-----------cCCHHHHHHHHHHh-----hhcccccccccccccccceEEEEEcCHHHHHHHHHHcCCCE
Confidence 46 889998 69999999999977 99999999988889999999999999999977776 77753
No 86
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.22 E-value=1.1e-11 Score=117.26 Aligned_cols=159 Identities=23% Similarity=0.357 Sum_probs=127.2
Q ss_pred CCceeeeecCCCcceeEEecCCCCCCCCHHHHHHHHHHHHHhhhCCcccceEEEecCCCCCCeEEeeeCCHHHH-HHHHC
Q 024012 63 IGTTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIYHVSWQSNFGFCCELDDECA-QELTG 141 (274)
Q Consensus 63 ~~s~~lf~vgnl~~~~~~~~~p~~~~~t~~~L~~~F~~~l~~~~G~v~~v~i~~~~~g~srgfgFV~f~~~e~a-~~a~~ 141 (274)
..+++|| +|||+. ++++.+|+..|... |.+.+|+|...+.++..-||||.|.+...+ .+..+
T Consensus 370 ~atrTLf-~Gnl~~-----------kl~eseiR~af~e~-----gkve~VDiKtP~~~~esa~~f~~~~n~dmtp~ak~e 432 (975)
T KOG0112|consen 370 RATRTLF-LGNLDS-----------KLTESEIRPAFDES-----GKVEEVDIKTPHIKTESAYAFVSLLNTDMTPSAKFE 432 (975)
T ss_pred hhhhhhh-hcCccc-----------chhhhhhhhhhhhh-----ccccccccccCCCCcccchhhhhhhccccCcccchh
Confidence 3577899 999999 79999999999988 999999999888888889999999999888 44444
Q ss_pred CCCceeecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecC
Q 024012 142 VPGVLSVQPDENFGSENKDYGGNNLQNSMVPSDSSEASPTQIKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDK 221 (274)
Q Consensus 142 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~d~ 221 (274)
+.+.+.+. ........ ......++.+|+++|+.++....|...|..||.|..|.+-.
T Consensus 433 ~s~~~I~~-------------------g~~r~glG--~~kst~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~h-- 489 (975)
T KOG0112|consen 433 ESGPLIGN-------------------GTHRIGLG--QPKSTPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYRH-- 489 (975)
T ss_pred hcCCcccc-------------------Cccccccc--ccccccceeeccCCCCCCChHHHHHHHhhccCcceeeeccc--
Confidence 43322100 00000000 11334588899999999999999999999999999876542
Q ss_pred CCCCcceEEEEEeCCHHHHHHHHHHhCCceeCC--EEeEEEeecCC
Q 024012 222 ISKRSKGYAFIEYTTEEAASAALKEMNGKIING--WMIVVDVAKTT 265 (274)
Q Consensus 222 ~~g~~rG~aFV~F~s~~~A~~Ai~~l~g~~l~G--~~l~V~~a~~~ 265 (274)
| .-||+|.|++...|+.|+..|.|..|+| ++++|+||.+.
T Consensus 490 --g--q~yayi~yes~~~aq~a~~~~rgap~G~P~~r~rvdla~~~ 531 (975)
T KOG0112|consen 490 --G--QPYAYIQYESPPAAQAATHDMRGAPLGGPPRRLRVDLASPP 531 (975)
T ss_pred --C--CcceeeecccCccchhhHHHHhcCcCCCCCcccccccccCC
Confidence 2 2399999999999999999999999996 78999999875
No 87
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=99.18 E-value=5.5e-11 Score=110.92 Aligned_cols=77 Identities=26% Similarity=0.413 Sum_probs=72.3
Q ss_pred cccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEeEEEeec
Q 024012 184 KTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVDVAK 263 (274)
Q Consensus 184 ~~~~lfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~d~~~g~~rG~aFV~F~s~~~A~~Ai~~l~g~~l~G~~l~V~~a~ 263 (274)
.++|||||+|+..++|.+|..+|+.||+|++|.++. +||+|||.+....+|.+|+.+|++..+.++.|+|.||.
T Consensus 420 ~SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~------~R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa~ 493 (894)
T KOG0132|consen 420 CSRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIP------PRGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWAV 493 (894)
T ss_pred eeeeeeeccccchhhHHHHHHHHHhcccceeEeecc------CCceeEEEEeehhHHHHHHHHHhcccccceeeEEeeec
Confidence 468999999999999999999999999999998874 47899999999999999999999999999999999998
Q ss_pred CCC
Q 024012 264 TTP 266 (274)
Q Consensus 264 ~~~ 266 (274)
.+.
T Consensus 494 g~G 496 (894)
T KOG0132|consen 494 GKG 496 (894)
T ss_pred cCC
Confidence 764
No 88
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.18 E-value=2.6e-11 Score=105.25 Aligned_cols=83 Identities=30% Similarity=0.556 Sum_probs=76.8
Q ss_pred cccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEeEEEeec
Q 024012 184 KTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVDVAK 263 (274)
Q Consensus 184 ~~~~lfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~d~~~g~~rG~aFV~F~s~~~A~~Ai~~l~g~~l~G~~l~V~~a~ 263 (274)
...+|||++|++.++++.|+++|++||+|.++.+++|+.++++|||+||+|++.+...+++ ...-+.|.|+.|.+.-|.
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl-~~~~h~~dgr~ve~k~av 83 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVL-NARTHKLDGRSVEPKRAV 83 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheee-cccccccCCccccceecc
Confidence 4789999999999999999999999999999999999999999999999999999999998 446788999999999988
Q ss_pred CCCC
Q 024012 264 TTPK 267 (274)
Q Consensus 264 ~~~~ 267 (274)
+...
T Consensus 84 ~r~~ 87 (311)
T KOG4205|consen 84 SRED 87 (311)
T ss_pred Cccc
Confidence 8753
No 89
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=99.17 E-value=2e-10 Score=99.52 Aligned_cols=185 Identities=15% Similarity=0.164 Sum_probs=122.0
Q ss_pred eeeeecCCCcceeEEecCCCCCCCCHHHHHHHHHHHHHhhhCCcccceEEEecCCCCCCeEEeeeCCHHHHHHHHCCCCc
Q 024012 66 TLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIYHVSWQSNFGFCCELDDECAQELTGVPGV 145 (274)
Q Consensus 66 ~~lf~vgnl~~~~~~~~~p~~~~~t~~~L~~~F~~~l~~~~G~v~~v~i~~~~~g~srgfgFV~f~~~e~a~~a~~~~g~ 145 (274)
..+.....||+ +.|+.|+.++|.+-.. +.|-...+-...+.+|+..|-|||.|..+++|+.|+..+..
T Consensus 161 qvivRmRGLPf-----------dat~~dVv~FF~~~cp-v~~g~egvLFV~rpdgrpTGdAFvlfa~ee~aq~aL~khrq 228 (508)
T KOG1365|consen 161 QVIVRMRGLPF-----------DATALDVVEFFGPPCP-VTGGTEGVLFVTRPDGRPTGDAFVLFACEEDAQFALRKHRQ 228 (508)
T ss_pred ceEEEecCCCC-----------CcchHHHHHhcCCCCc-ccCCccceEEEECCCCCcccceEEEecCHHHHHHHHHHHHH
Confidence 44666889999 7999999999964211 11344556667788999999999999999999888754311
Q ss_pred ------eeecCCC---CCCCCCCCCCCCCCC---CCCCCCCCCCCCCCCccccEEEEcCCCCCCCHHHHHHHHhccCC-e
Q 024012 146 ------LSVQPDE---NFGSENKDYGGNNLQ---NSMVPSDSSEASPTQIKTKKLFVTGLSFYTSEKTLRAAFEGFGE-L 212 (274)
Q Consensus 146 ------~~~~~~~---~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~te~~L~~~F~~fG~-i 212 (274)
+.+.+.. ....-++.....-+. ..-.+.....-.+......+|-++|||+..+.++|.++|..|-. |
T Consensus 229 ~iGqRYIElFRSTaaEvqqvlnr~~s~pLi~~~~sp~~p~~p~~~~p~~~~kdcvRLRGLPy~AtvEdIL~FlgdFa~~i 308 (508)
T KOG1365|consen 229 NIGQRYIELFRSTAAEVQQVLNREVSEPLIPGLTSPLLPGGPARLVPPTRSKDCVRLRGLPYEATVEDILDFLGDFATDI 308 (508)
T ss_pred HHhHHHHHHHHHhHHHHHHHHHhhccccccCCCCCCCCCCCccccCCCCCCCCeeEecCCChhhhHHHHHHHHHHHhhhc
Confidence 0000000 000000000000000 00011011111223334778999999999999999999999854 3
Q ss_pred EE--EEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEeEEEeec
Q 024012 213 VE--VKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVDVAK 263 (274)
Q Consensus 213 ~~--v~i~~d~~~g~~rG~aFV~F~s~~~A~~Ai~~l~g~~l~G~~l~V~~a~ 263 (274)
.. |.+..+. .|++.|-|||+|.+.+.|..|....+.+...+|.|.|--+.
T Consensus 309 ~f~gVHmv~N~-qGrPSGeAFIqm~nae~a~aaaqk~hk~~mk~RYiEvfp~S 360 (508)
T KOG1365|consen 309 RFQGVHMVLNG-QGRPSGEAFIQMRNAERARAAAQKCHKKLMKSRYIEVFPCS 360 (508)
T ss_pred ccceeEEEEcC-CCCcChhhhhhhhhhHHHHHHHHHHHHhhcccceEEEeecc
Confidence 33 6666665 78899999999999999999999988887778888886554
No 90
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=99.17 E-value=1.2e-10 Score=105.47 Aligned_cols=83 Identities=28% Similarity=0.515 Sum_probs=78.5
Q ss_pred cccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEeEEEeec
Q 024012 184 KTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVDVAK 263 (274)
Q Consensus 184 ~~~~lfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~d~~~g~~rG~aFV~F~s~~~A~~Ai~~l~g~~l~G~~l~V~~a~ 263 (274)
.+++|||.+|...+...+|+.+|++||.|+-.+|+.+..+-..++||||++.+.++|.++|..||.+.|.|+.|.|+-++
T Consensus 404 ~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEkaK 483 (940)
T KOG4661|consen 404 LGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEKAK 483 (940)
T ss_pred cccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeeecc
Confidence 46799999999999999999999999999999999998787889999999999999999999999999999999999998
Q ss_pred CCC
Q 024012 264 TTP 266 (274)
Q Consensus 264 ~~~ 266 (274)
..+
T Consensus 484 NEp 486 (940)
T KOG4661|consen 484 NEP 486 (940)
T ss_pred cCc
Confidence 765
No 91
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=99.14 E-value=5.2e-11 Score=97.94 Aligned_cols=84 Identities=26% Similarity=0.426 Sum_probs=77.4
Q ss_pred CccccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEeEEEe
Q 024012 182 QIKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVDV 261 (274)
Q Consensus 182 ~~~~~~lfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~d~~~g~~rG~aFV~F~s~~~A~~Ai~~l~g~~l~G~~l~V~~ 261 (274)
+....+||++.|..+++.+.|-..|++|-.....++++|+.||+++||+||.|.+..++..|+.+|+|..++.+.|++.-
T Consensus 187 ~~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVgsrpiklRk 266 (290)
T KOG0226|consen 187 DEDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVGSRPIKLRK 266 (290)
T ss_pred ccccceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhcccccccchhHhhh
Confidence 34467999999999999999999999999999999999999999999999999999999999999999999999998875
Q ss_pred ecCC
Q 024012 262 AKTT 265 (274)
Q Consensus 262 a~~~ 265 (274)
+..+
T Consensus 267 S~wk 270 (290)
T KOG0226|consen 267 SEWK 270 (290)
T ss_pred hhHH
Confidence 5443
No 92
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.10 E-value=1.8e-10 Score=96.81 Aligned_cols=62 Identities=11% Similarity=0.095 Sum_probs=55.4
Q ss_pred ceeeeecCCCcceeEEecCCCCCCCCHHHHHHHHHHHHHhhhCCcccceEEEecCCCCCCeEEeeeCCHHHHHHHHCCCC
Q 024012 65 TTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIYHVSWQSNFGFCCELDDECAQELTGVPG 144 (274)
Q Consensus 65 s~~lf~vgnl~~~~~~~~~p~~~~~t~~~L~~~F~~~l~~~~G~v~~v~i~~~~~g~srgfgFV~f~~~e~a~~a~~~~g 144 (274)
.+++| |||||+ .+|+++|+++|+.+ |.|.+|+|..+. .++|||||+|.++++|+.|+.|+|
T Consensus 4 ~rtVf-VgNLs~-----------~tTE~dLrefFS~~-----G~I~~V~I~~d~--~~~GfAFVtF~d~eaAe~AllLnG 64 (260)
T PLN03120 4 VRTVK-VSNVSL-----------KATERDIKEFFSFS-----GDIEYVEMQSEN--ERSQIAYVTFKDPQGAETALLLSG 64 (260)
T ss_pred CCEEE-EeCCCC-----------CCCHHHHHHHHHhc-----CCeEEEEEeecC--CCCCEEEEEeCcHHHHHHHHHhcC
Confidence 56799 999999 79999999999988 999999998543 468999999999999999988887
Q ss_pred c
Q 024012 145 V 145 (274)
Q Consensus 145 ~ 145 (274)
.
T Consensus 65 ~ 65 (260)
T PLN03120 65 A 65 (260)
T ss_pred C
Confidence 5
No 93
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.08 E-value=3.1e-10 Score=93.90 Aligned_cols=64 Identities=9% Similarity=0.035 Sum_probs=57.5
Q ss_pred CceeeeecCCCcceeEEecCCCCCCCCHHHHHHHHHHHHHhhhCCcccceEEEecCCCCCCeEEeeeCCHHHHHHHHCCC
Q 024012 64 GTTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIYHVSWQSNFGFCCELDDECAQELTGVP 143 (274)
Q Consensus 64 ~s~~lf~vgnl~~~~~~~~~p~~~~~t~~~L~~~F~~~l~~~~G~v~~v~i~~~~~g~srgfgFV~f~~~e~a~~a~~~~ 143 (274)
.+.++| |+||++ ++|+++|+++|+.+ |+|.+|+|.++ +..+|||||+|.++++|+.|+.|+
T Consensus 4 ~g~TV~-V~NLS~-----------~tTE~dLrefFS~~-----G~I~~V~I~~D--~et~gfAfVtF~d~~aaetAllLn 64 (243)
T PLN03121 4 GGYTAE-VTNLSP-----------KATEKDVYDFFSHC-----GAIEHVEIIRS--GEYACTAYVTFKDAYALETAVLLS 64 (243)
T ss_pred CceEEE-EecCCC-----------CCCHHHHHHHHHhc-----CCeEEEEEecC--CCcceEEEEEECCHHHHHHHHhcC
Confidence 456789 999999 79999999999988 99999998854 677799999999999999999999
Q ss_pred Cce
Q 024012 144 GVL 146 (274)
Q Consensus 144 g~~ 146 (274)
|..
T Consensus 65 Ga~ 67 (243)
T PLN03121 65 GAT 67 (243)
T ss_pred CCe
Confidence 863
No 94
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=99.08 E-value=2.4e-09 Score=86.62 Aligned_cols=92 Identities=24% Similarity=0.330 Sum_probs=75.7
Q ss_pred CCccccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEec-CCCCCcceEEEEEeCCHHHHHHHHHHhCCceeC---CEE
Q 024012 181 TQIKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMD-KISKRSKGYAFIEYTTEEAASAALKEMNGKIIN---GWM 256 (274)
Q Consensus 181 ~~~~~~~lfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~d-~~~g~~rG~aFV~F~s~~~A~~Ai~~l~g~~l~---G~~ 256 (274)
.....++|||.|||.++...+|..+|..|-.-+...+-.. +.....+-+|||.|.+..+|.+|+.+|||..|+ +..
T Consensus 30 ~~~~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~st 109 (284)
T KOG1457|consen 30 EPGAVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGST 109 (284)
T ss_pred cccccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCce
Confidence 3445899999999999999999999999977776655442 212234579999999999999999999999998 899
Q ss_pred eEEEeecCCCCCCCCC
Q 024012 257 IVVDVAKTTPKYSRGR 272 (274)
Q Consensus 257 l~V~~a~~~~~~~~~r 272 (274)
|++++|+++.+..+++
T Consensus 110 LhiElAKSNtK~kr~k 125 (284)
T KOG1457|consen 110 LHIELAKSNTKRKRRK 125 (284)
T ss_pred eEeeehhcCcccccCC
Confidence 9999999987766554
No 95
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=99.06 E-value=1.4e-11 Score=116.07 Aligned_cols=147 Identities=14% Similarity=0.184 Sum_probs=123.5
Q ss_pred eeeecCCCcceeEEecCCCCCCCCHHHHHHHHHHHHHhhhCCcccceEE-EecCCCCCCeEEeeeCCHHHHHHHHCCCCc
Q 024012 67 LLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMC-IYHVSWQSNFGFCCELDDECAQELTGVPGV 145 (274)
Q Consensus 67 ~lf~vgnl~~~~~~~~~p~~~~~t~~~L~~~F~~~l~~~~G~v~~v~i~-~~~~g~srgfgFV~f~~~e~a~~a~~~~g~ 145 (274)
+.| +.||+. .+.+++|...|... |.+..+++. ....++-||+|+|+|..++++.+|+.+.-.
T Consensus 669 ~~f-vsnl~~-----------~~~~~dl~~~~~~~-----~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d~ 731 (881)
T KOG0128|consen 669 KIF-VSNLSP-----------KMSEEDLSERFSPS-----GTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFRDS 731 (881)
T ss_pred HHH-Hhhcch-----------hhcCchhhhhcCcc-----chhhhHHHHHHhhccccccceeeEeecCCchhhhhhhhhh
Confidence 477 889998 69999999999855 777777755 367889999999999999999888865311
Q ss_pred eeecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCC
Q 024012 146 LSVQPDENFGSENKDYGGNNLQNSMVPSDSSEASPTQIKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKR 225 (274)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~d~~~g~ 225 (274)
. ......|+|.|.|+..|.+.|+.+++.+|.+.+.+++..+ .|+
T Consensus 732 ~-----------------------------------~~gK~~v~i~g~pf~gt~e~~k~l~~~~gn~~~~~~vt~r-~gk 775 (881)
T KOG0128|consen 732 C-----------------------------------FFGKISVAISGPPFQGTKEELKSLASKTGNVTSLRLVTVR-AGK 775 (881)
T ss_pred h-----------------------------------hhhhhhhheeCCCCCCchHHHHhhccccCCccccchhhhh-ccc
Confidence 0 0115679999999999999999999999999999988877 899
Q ss_pred cceEEEEEeCCHHHHHHHHHHhCCceeCCEEeEEEeecCCC
Q 024012 226 SKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVDVAKTTP 266 (274)
Q Consensus 226 ~rG~aFV~F~s~~~A~~Ai~~l~g~~l~G~~l~V~~a~~~~ 266 (274)
++|.|+|.|.+..+|.++...+++..+.-+.+.|..+.|.+
T Consensus 776 pkg~a~v~y~~ea~~s~~~~s~d~~~~rE~~~~v~vsnp~~ 816 (881)
T KOG0128|consen 776 PKGKARVDYNTEADASRKVASVDVAGKRENNGEVQVSNPER 816 (881)
T ss_pred cccceeccCCCcchhhhhcccchhhhhhhcCccccccCCcc
Confidence 99999999999999999999988888887777777766643
No 96
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=99.04 E-value=6.6e-09 Score=90.89 Aligned_cols=76 Identities=26% Similarity=0.405 Sum_probs=69.0
Q ss_pred ccEEEEcCCCC-CCCHHHHHHHHhccCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEeEEEeec
Q 024012 185 TKKLFVTGLSF-YTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVDVAK 263 (274)
Q Consensus 185 ~~~lfV~nLp~-~~te~~L~~~F~~fG~i~~v~i~~d~~~g~~rG~aFV~F~s~~~A~~Ai~~l~g~~l~G~~l~V~~a~ 263 (274)
+..|.|.||.. .+|.+-|.-+|+-||.|.+|+|+.++ +--|.|+|.+...|+-|+..|+|..+.|++|+|.+++
T Consensus 297 n~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~nk-----kd~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SK 371 (492)
T KOG1190|consen 297 NVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILYNK-----KDNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSK 371 (492)
T ss_pred ceEEEEecCchhccchhHHHHHHhhhcceEEEEeeecC-----CcceeeeecchhHHHHHHHHhhcceecCceEEEeecc
Confidence 57788888865 58999999999999999999999886 2479999999999999999999999999999999998
Q ss_pred CC
Q 024012 264 TT 265 (274)
Q Consensus 264 ~~ 265 (274)
-.
T Consensus 372 H~ 373 (492)
T KOG1190|consen 372 HT 373 (492)
T ss_pred Cc
Confidence 64
No 97
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=99.03 E-value=7.3e-09 Score=90.63 Aligned_cols=175 Identities=18% Similarity=0.205 Sum_probs=116.6
Q ss_pred eeeeecCCCcceeEEecCCCCCCCCHHHHHHHHHHHHHhhhCCcccceEEEecCCCCCCeEEeeeCCHHHHHHHH-CCCC
Q 024012 66 TLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIYHVSWQSNFGFCCELDDECAQELT-GVPG 144 (274)
Q Consensus 66 ~~lf~vgnl~~~~~~~~~p~~~~~t~~~L~~~F~~~l~~~~G~v~~v~i~~~~~g~srgfgFV~f~~~e~a~~a~-~~~g 144 (274)
..|. |.||... .+|.+.|.-+|+ ++|.|..|+|.... +--|.|+|.+...|+-|+ .++|
T Consensus 298 ~vll-vsnln~~----------~VT~d~LftlFg-----vYGdVqRVkil~nk----kd~ALIQmsd~~qAqLA~~hL~g 357 (492)
T KOG1190|consen 298 VVLL-VSNLNEE----------AVTPDVLFTLFG-----VYGDVQRVKILYNK----KDNALIQMSDGQQAQLAMEHLEG 357 (492)
T ss_pred eEEE-EecCchh----------ccchhHHHHHHh-----hhcceEEEEeeecC----CcceeeeecchhHHHHHHHHhhc
Confidence 3444 7776664 799999999999 55999888877431 367999999999995554 4566
Q ss_pred ceee-cCCCCCCCC----------------CCCCCCCCCCCCCCCCCCCCCCCCCccccEEEEcCCCCCCCHHHHHHHHh
Q 024012 145 VLSV-QPDENFGSE----------------NKDYGGNNLQNSMVPSDSSEASPTQIKTKKLFVTGLSFYTSEKTLRAAFE 207 (274)
Q Consensus 145 ~~~~-~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~te~~L~~~F~ 207 (274)
..+. .+.+...+. .+.+....+.. ..++..+-....-+++.+|.+.|+|.+++||+|+.+|.
T Consensus 358 ~~l~gk~lrvt~SKH~~vqlp~egq~d~glT~dy~~spLhr-fkkpgsKN~~ni~PpsatlHlsnip~svsee~lk~~f~ 436 (492)
T KOG1190|consen 358 HKLYGKKLRVTLSKHTNVQLPREGQEDQGLTKDYGNSPLHR-FKKPGSKNYQNIFPPSATLHLSNIPPSVSEEDLKNLFQ 436 (492)
T ss_pred ceecCceEEEeeccCccccCCCCCCccccccccCCCCchhh-ccCcccccccccCCchhheeeccCCcccchhHHHHhhh
Confidence 4221 111100000 01111111100 01111111122335678999999999999999999999
Q ss_pred ccCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCC-EEeEEEeecCC
Q 024012 208 GFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIING-WMIVVDVAKTT 265 (274)
Q Consensus 208 ~fG~i~~v~i~~d~~~g~~rG~aFV~F~s~~~A~~Ai~~l~g~~l~G-~~l~V~~a~~~ 265 (274)
.-|-.++...... +.+-+|++.+.+.|+|..|+-.|+++.+++ ..++|+|+++.
T Consensus 437 ~~g~~vkafkff~----kd~kmal~q~~sveeA~~ali~~hnh~lgen~hlRvSFSks~ 491 (492)
T KOG1190|consen 437 EPGGQVKAFKFFQ----KDRKMALPQLESVEEAIQALIDLHNHYLGENHHLRVSFSKST 491 (492)
T ss_pred cCCceEEeeeecC----CCcceeecccCChhHhhhhccccccccCCCCceEEEEeeccc
Confidence 8887665544322 234499999999999999999999999985 58999998863
No 98
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.03 E-value=2.6e-09 Score=96.07 Aligned_cols=163 Identities=20% Similarity=0.175 Sum_probs=111.2
Q ss_pred CCCceeeeecCCCcceeEEecCCCCCCCCHHHHHHHHHHHHHhhhCCcccceEE--E--ecCCCCCC---eEEeeeCCHH
Q 024012 62 QIGTTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMC--I--YHVSWQSN---FGFCCELDDE 134 (274)
Q Consensus 62 ~~~s~~lf~vgnl~~~~~~~~~p~~~~~t~~~L~~~F~~~l~~~~G~v~~v~i~--~--~~~g~srg---fgFV~f~~~e 134 (274)
+.-|+.+| ||.||. +++|++|...|.++ |.+. |.-. . ...-..+| |.|..|+++.
T Consensus 256 ~~~S~KVF-vGGlp~-----------dise~~i~~~F~~F-----Gs~~-VdWP~k~~~~~~~ppkGs~~YvflvFe~E~ 317 (520)
T KOG0129|consen 256 PRYSRKVF-VGGLPW-----------DITEAQINASFGQF-----GSVK-VDWPGKANSRGRAPPKGSYGYVFLVFEDER 317 (520)
T ss_pred ccccccee-ecCCCc-----------cccHHHHHhhcccc-----cceE-eecCCCccccccCCCCCcccEEEEEecchH
Confidence 34577899 999999 79999999999966 8873 2211 1 11122456 9999999999
Q ss_pred HHHHHHCC----CCc--eeecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccEEEEcCCCCCCCHHHHHHHHh-
Q 024012 135 CAQELTGV----PGV--LSVQPDENFGSENKDYGGNNLQNSMVPSDSSEASPTQIKTKKLFVTGLSFYTSEKTLRAAFE- 207 (274)
Q Consensus 135 ~a~~a~~~----~g~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~te~~L~~~F~- 207 (274)
++++++.. .+. +.+.........-....-. +.. ..........-.+.+|||||+||.-++.++|-.+|+
T Consensus 318 sV~~Ll~aC~~~~~~~yf~vss~~~k~k~VQIrPW~-laD---s~fv~d~sq~lDprrTVFVGgvprpl~A~eLA~imd~ 393 (520)
T KOG0129|consen 318 SVQSLLSACSEGEGNYYFKVSSPTIKDKEVQIRPWV-LAD---SDFVLDHNQPIDPRRTVFVGGLPRPLTAEELAMIMED 393 (520)
T ss_pred HHHHHHHHHhhcccceEEEEecCcccccceeEEeeE-ecc---chhhhccCcccCccceEEecCCCCcchHHHHHHHHHH
Confidence 99776532 111 2222221111100000000 000 000001233345689999999999999999999998
Q ss_pred ccCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHH
Q 024012 208 GFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKE 246 (274)
Q Consensus 208 ~fG~i~~v~i~~d~~~g~~rG~aFV~F~s~~~A~~Ai~~ 246 (274)
-||.|..+-|-.|++-+.++|-|=|+|.+..+-.+||.+
T Consensus 394 lyGgV~yaGIDtD~k~KYPkGaGRVtFsnqqsYi~AIsa 432 (520)
T KOG0129|consen 394 LFGGVLYVGIDTDPKLKYPKGAGRVTFSNQQAYIKAISA 432 (520)
T ss_pred hcCceEEEEeccCcccCCCCCcceeeecccHHHHHHHhh
Confidence 699999999999987899999999999999999999965
No 99
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=99.02 E-value=1.3e-09 Score=91.12 Aligned_cols=82 Identities=26% Similarity=0.473 Sum_probs=76.5
Q ss_pred cccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEeEEEeec
Q 024012 184 KTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVDVAK 263 (274)
Q Consensus 184 ~~~~lfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~d~~~g~~rG~aFV~F~s~~~A~~Ai~~l~g~~l~G~~l~V~~a~ 263 (274)
...+|+|.|||..++++||+++|..||.++.+.+..|+ .|.+.|.|-|.|...++|.+|++.+||..++|+.+++....
T Consensus 82 ~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~-~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~i~ 160 (243)
T KOG0533|consen 82 RSTKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDR-AGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEIIS 160 (243)
T ss_pred CcceeeeecCCcCcchHHHHHHHHHhccceEEeeccCC-CCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEEec
Confidence 35789999999999999999999999999999999998 89999999999999999999999999999999999998877
Q ss_pred CCC
Q 024012 264 TTP 266 (274)
Q Consensus 264 ~~~ 266 (274)
+..
T Consensus 161 ~~~ 163 (243)
T KOG0533|consen 161 SPS 163 (243)
T ss_pred Ccc
Confidence 653
No 100
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=98.97 E-value=7.2e-11 Score=95.08 Aligned_cols=139 Identities=17% Similarity=0.173 Sum_probs=113.6
Q ss_pred CCceeeeecCCCcceeEEecCCCCCCCCHHHHHHHHHHHHHhhhCCcccceEEEecCCCCCCeEEeeeCCHHHHHHHHCC
Q 024012 63 IGTTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIYHVSWQSNFGFCCELDDECAQELTGV 142 (274)
Q Consensus 63 ~~s~~lf~vgnl~~~~~~~~~p~~~~~t~~~L~~~F~~~l~~~~G~v~~v~i~~~~~g~srgfgFV~f~~~e~a~~a~~~ 142 (274)
...++|| |+|+.. .||++-|.++|.+. |+|..|.|....++..+ ||||.|.++-++.-|++|
T Consensus 7 e~drtl~-v~n~~~-----------~v~eelL~Elfiqa-----GPV~kv~ip~~~d~~~k-Fa~v~f~~E~sv~~a~~L 68 (267)
T KOG4454|consen 7 EMDRTLL-VQNMYS-----------GVSEELLSELFIQA-----GPVYKVGIPSGQDQEQK-FAYVFFPNENSVQLAGQL 68 (267)
T ss_pred chhhHHH-HHhhhh-----------hhhHHHHHHHhhcc-----CceEEEeCCCCccCCCc-eeeeecccccchhhhhhh
Confidence 4567899 999999 79999999999999 99988888877778877 999999999999777765
Q ss_pred -CCceeecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccEEEEcC----CCCCCCHHHHHHHHhccCCeEEEEE
Q 024012 143 -PGVLSVQPDENFGSENKDYGGNNLQNSMVPSDSSEASPTQIKTKKLFVTG----LSFYTSEKTLRAAFEGFGELVEVKI 217 (274)
Q Consensus 143 -~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~n----Lp~~~te~~L~~~F~~fG~i~~v~i 217 (274)
||.-+ .......+++.|+ |...++++.+...|+.-|.++.+++
T Consensus 69 ~ng~~l--------------------------------~~~e~q~~~r~G~shapld~r~~~ei~~~v~s~a~p~~~~R~ 116 (267)
T KOG4454|consen 69 ENGDDL--------------------------------EEDEEQRTLRCGNSHAPLDERVTEEILYEVFSQAGPIEGVRI 116 (267)
T ss_pred cccchh--------------------------------ccchhhcccccCCCcchhhhhcchhhheeeecccCCCCCccc
Confidence 66532 1111244566777 7788899999999999999999999
Q ss_pred EecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcee
Q 024012 218 IMDKISKRSKGYAFIEYTTEEAASAALKEMNGKII 252 (274)
Q Consensus 218 ~~d~~~g~~rG~aFV~F~s~~~A~~Ai~~l~g~~l 252 (274)
.++. +|+++.++|+.+....+.-.|+...++..+
T Consensus 117 ~~~~-d~rnrn~~~~~~qr~~~~P~~~~~y~~l~~ 150 (267)
T KOG4454|consen 117 PTDN-DGRNRNFGFVTYQRLCAVPFALDLYQGLEL 150 (267)
T ss_pred cccc-cCCccCccchhhhhhhcCcHHhhhhcccCc
Confidence 9998 588999999999887777777776665543
No 101
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=98.96 E-value=2.7e-09 Score=87.48 Aligned_cols=65 Identities=8% Similarity=0.107 Sum_probs=55.3
Q ss_pred CceeeeecCCCcceeEEecCCCCCCCCHHHHHHHHHHHHHhhhCCcccceEEE-ecCCCCCCeEEeeeCCHHHHHHHH-C
Q 024012 64 GTTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCI-YHVSWQSNFGFCCELDDECAQELT-G 141 (274)
Q Consensus 64 ~s~~lf~vgnl~~~~~~~~~p~~~~~t~~~L~~~F~~~l~~~~G~v~~v~i~~-~~~g~srgfgFV~f~~~e~a~~a~-~ 141 (274)
++.++- |-||+. ++++.+|+++|..+ |.|..+.+.+ +.||.+||||||.|.+.++|.+|+ .
T Consensus 188 D~~tvR-vtNLse-----------d~~E~dL~eLf~~f-----g~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~ 250 (270)
T KOG0122|consen 188 DEATVR-VTNLSE-----------DMREDDLEELFRPF-----GPITRVYLARDKETGLSKGFAFVTFESRDDAARAIAD 250 (270)
T ss_pred ccceeE-EecCcc-----------ccChhHHHHHhhcc-----CccceeEEEEccccCcccceEEEEEecHHHHHHHHHH
Confidence 455577 999999 79999999999966 9999999777 689999999999999999995555 5
Q ss_pred CCCc
Q 024012 142 VPGV 145 (274)
Q Consensus 142 ~~g~ 145 (274)
|||.
T Consensus 251 LnG~ 254 (270)
T KOG0122|consen 251 LNGY 254 (270)
T ss_pred ccCc
Confidence 6764
No 102
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=98.95 E-value=4.1e-09 Score=90.38 Aligned_cols=86 Identities=22% Similarity=0.302 Sum_probs=78.1
Q ss_pred CccccEEEEcCCCCCCCHHHHHHHHhccCCeE--------EEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeC
Q 024012 182 QIKTKKLFVTGLSFYTSEKTLRAAFEGFGELV--------EVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIIN 253 (274)
Q Consensus 182 ~~~~~~lfV~nLp~~~te~~L~~~F~~fG~i~--------~v~i~~d~~~g~~rG~aFV~F~s~~~A~~Ai~~l~g~~l~ 253 (274)
...++.|||.|||.++|.+++.++|+++|.|. .|++.++. .|.-+|=|.+.|--.++..-|++.|++..|.
T Consensus 131 ~~~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~-~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~r 209 (382)
T KOG1548|consen 131 PKVNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDN-QGKLKGDALCCYIKRESVELAIKILDEDELR 209 (382)
T ss_pred cccCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecC-CCCccCceEEEeecccHHHHHHHHhCccccc
Confidence 44577899999999999999999999999886 48899988 5999999999999999999999999999999
Q ss_pred CEEeEEEeecCCCCC
Q 024012 254 GWMIVVDVAKTTPKY 268 (274)
Q Consensus 254 G~~l~V~~a~~~~~~ 268 (274)
|+.|+|+.|+=+.+.
T Consensus 210 g~~~rVerAkfq~Kg 224 (382)
T KOG1548|consen 210 GKKLRVERAKFQMKG 224 (382)
T ss_pred CcEEEEehhhhhhcc
Confidence 999999999876543
No 103
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=98.95 E-value=4.7e-10 Score=76.47 Aligned_cols=59 Identities=10% Similarity=0.174 Sum_probs=49.8
Q ss_pred eeecCCCcceeEEecCCCCCCCCHHHHHHHHHHHHHhhhCCcccceEEEecCCCCCCeEEeeeCCHHHHHHHHCCC
Q 024012 68 LFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIYHVSWQSNFGFCCELDDECAQELTGVP 143 (274)
Q Consensus 68 lf~vgnl~~~~~~~~~p~~~~~t~~~L~~~F~~~l~~~~G~v~~v~i~~~~~g~srgfgFV~f~~~e~a~~a~~~~ 143 (274)
|+ |+|||. ++|+++|+++|..+ |.|..+++.....|.++|+|||+|.++++|++|+.+.
T Consensus 1 v~-i~nlp~-----------~~~~~~l~~~f~~~-----g~v~~v~~~~~~~~~~~~~a~v~f~~~~~a~~al~~~ 59 (70)
T PF14259_consen 1 VY-ISNLPP-----------STTEEDLRNFFSRF-----GPVEKVRLIKNKDGQSRGFAFVEFSSEEDAKRALELL 59 (70)
T ss_dssp EE-EESSTT-----------T--HHHHHHHCTTS-----SBEEEEEEEESTTSSEEEEEEEEESSHHHHHHHHHHH
T ss_pred CE-EeCCCC-----------CCCHHHHHHHHHhc-----CCcceEEEEeeeccccCCEEEEEeCCHHHHHHHHHHC
Confidence 35 888888 59999999999976 9999999998666899999999999999998888653
No 104
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=98.93 E-value=1.2e-09 Score=81.04 Aligned_cols=65 Identities=14% Similarity=0.282 Sum_probs=55.2
Q ss_pred CceeeeecCCCcceeEEecCCCCCCCCHHHHHHHHHHHHHhhhCCcccceEEEe-cCCCCCCeEEeeeCCHHHHHHHHC-
Q 024012 64 GTTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIY-HVSWQSNFGFCCELDDECAQELTG- 141 (274)
Q Consensus 64 ~s~~lf~vgnl~~~~~~~~~p~~~~~t~~~L~~~F~~~l~~~~G~v~~v~i~~~-~~g~srgfgFV~f~~~e~a~~a~~- 141 (274)
.|.+++ ||||+++ +|||+|.++|+.+ |.|..|.|-.+ .+-..-|||||+|.+.++|+.|+.
T Consensus 35 ~S~tvy-VgNlSfy-----------ttEEqiyELFs~c-----G~irriiMGLdr~kktpCGFCFVeyy~~~dA~~Alry 97 (153)
T KOG0121|consen 35 KSCTVY-VGNLSFY-----------TTEEQIYELFSKC-----GDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRY 97 (153)
T ss_pred hcceEE-Eeeeeee-----------ecHHHHHHHHHhc-----cchheeEeccccCCcCccceEEEEEecchhHHHHHHH
Confidence 577899 9999996 9999999999999 99998887764 456678999999999999976665
Q ss_pred CCCc
Q 024012 142 VPGV 145 (274)
Q Consensus 142 ~~g~ 145 (274)
++|.
T Consensus 98 isgt 101 (153)
T KOG0121|consen 98 ISGT 101 (153)
T ss_pred hccC
Confidence 3654
No 105
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.93 E-value=2.3e-09 Score=89.86 Aligned_cols=83 Identities=25% Similarity=0.481 Sum_probs=77.9
Q ss_pred CccccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEeEEEe
Q 024012 182 QIKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVDV 261 (274)
Q Consensus 182 ~~~~~~lfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~d~~~g~~rG~aFV~F~s~~~A~~Ai~~l~g~~l~G~~l~V~~ 261 (274)
......+||+|+.+.+|.+++..+|+.||.|..+.|+.|+.+|.++|||||+|.+.+.++.|+. |+|..|.|+.+.|.+
T Consensus 98 ~~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~i~vt~ 176 (231)
T KOG4209|consen 98 EVDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGPAIEVTL 176 (231)
T ss_pred ccCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCcccccccceeee
Confidence 3457889999999999999999999999999999999999999999999999999999999996 999999999999998
Q ss_pred ecCC
Q 024012 262 AKTT 265 (274)
Q Consensus 262 a~~~ 265 (274)
.+.+
T Consensus 177 ~r~~ 180 (231)
T KOG4209|consen 177 KRTN 180 (231)
T ss_pred eeee
Confidence 8765
No 106
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.91 E-value=1.2e-08 Score=73.47 Aligned_cols=82 Identities=21% Similarity=0.275 Sum_probs=73.2
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhcc--CCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeC----CEEeEE
Q 024012 186 KKLFVTGLSFYTSEKTLRAAFEGF--GELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIIN----GWMIVV 259 (274)
Q Consensus 186 ~~lfV~nLp~~~te~~L~~~F~~f--G~i~~v~i~~d~~~g~~rG~aFV~F~s~~~A~~Ai~~l~g~~l~----G~~l~V 259 (274)
++|.|+|||...|.++|.+++... |..--+.++.|-.++.+.|||||.|.+++.|.+-.+.++|..+. .+...|
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i 81 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEI 81 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEE
Confidence 589999999999999999988653 77888999999989999999999999999999999999999986 577899
Q ss_pred EeecCCCC
Q 024012 260 DVAKTTPK 267 (274)
Q Consensus 260 ~~a~~~~~ 267 (274)
.||+-+.+
T Consensus 82 ~yAriQG~ 89 (97)
T PF04059_consen 82 SYARIQGK 89 (97)
T ss_pred ehhHhhCH
Confidence 99987653
No 107
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=98.89 E-value=5.5e-09 Score=94.16 Aligned_cols=81 Identities=20% Similarity=0.302 Sum_probs=70.2
Q ss_pred ccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEeEEEeecC
Q 024012 185 TKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVDVAKT 264 (274)
Q Consensus 185 ~~~lfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~d~~~g~~rG~aFV~F~s~~~A~~Ai~~l~g~~l~G~~l~V~~a~~ 264 (274)
..+|||+|||+++++++|++.|.+||.|+...|..-...++..+||||+|.+.++++.||.+ +-..++|++|.|+-.++
T Consensus 288 ~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~A-sp~~ig~~kl~Veek~~ 366 (419)
T KOG0116|consen 288 GLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEA-SPLEIGGRKLNVEEKRP 366 (419)
T ss_pred ccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhc-CccccCCeeEEEEeccc
Confidence 45599999999999999999999999999988877543455559999999999999999976 57789999999998887
Q ss_pred CC
Q 024012 265 TP 266 (274)
Q Consensus 265 ~~ 266 (274)
..
T Consensus 367 ~~ 368 (419)
T KOG0116|consen 367 GF 368 (419)
T ss_pred cc
Confidence 54
No 108
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=98.88 E-value=4.8e-08 Score=87.53 Aligned_cols=179 Identities=17% Similarity=0.170 Sum_probs=114.3
Q ss_pred ceeeeecCCCcceeEEecCCCCCCCCHHHHHHHHHHHHHhhhCCccc-ceEEEecCCCCCCeEEeeeCCHHHHHHHHCCC
Q 024012 65 TTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKD-AQMCIYHVSWQSNFGFCCELDDECAQELTGVP 143 (274)
Q Consensus 65 s~~lf~vgnl~~~~~~~~~p~~~~~t~~~L~~~F~~~l~~~~G~v~~-v~i~~~~~g~srgfgFV~f~~~e~a~~a~~~~ 143 (274)
...+..+..||+ .+|++||.++|.-. -.+.+ +-+..+..+++.|-|||+|++.+.|+.|++-+
T Consensus 102 ~d~vVRLRGLPf-----------scte~dI~~FFaGL-----~Iv~~gi~l~~d~rgR~tGEAfVqF~sqe~ae~Al~rh 165 (510)
T KOG4211|consen 102 NDGVVRLRGLPF-----------SCTEEDIVEFFAGL-----EIVPDGILLPMDQRGRPTGEAFVQFESQESAEIALGRH 165 (510)
T ss_pred CCceEEecCCCc-----------cCcHHHHHHHhcCC-----cccccceeeeccCCCCcccceEEEecCHHHHHHHHHHH
Confidence 344666899999 79999999999943 23333 33555788999999999999999998887643
Q ss_pred C------ceee--------------------cCCCCCC-CCCCCC---C-------------------------------
Q 024012 144 G------VLSV--------------------QPDENFG-SENKDY---G------------------------------- 162 (274)
Q Consensus 144 g------~~~~--------------------~~~~~~~-~~~~~~---~------------------------------- 162 (274)
. .+.+ +|.+-.. ...+.. .
T Consensus 166 re~iGhRYIEvF~Ss~~e~~~~~~~~~~~~~rpGpy~~~~a~Rg~~d~~~~~~~~~~~~r~g~~~~g~~g~~~~~~~~d~ 245 (510)
T KOG4211|consen 166 RENIGHRYIEVFRSSRAEVKRAAGPGDGRVGRPGPYDRPGAPRGGYDYGQGRDPGRNATRYGAGGEGYYGFSRYPSLQDY 245 (510)
T ss_pred HHhhccceEEeehhHHHHHHhhccccccccCCCCccccccCCccccccccccCCCccccccccccCCccccccCcccccc
Confidence 1 1111 1110000 000000 0
Q ss_pred ---CCCCCCCCC--CC----CCC-CC---CCCCccccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCcceE
Q 024012 163 ---GNNLQNSMV--PS----DSS-EA---SPTQIKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGY 229 (274)
Q Consensus 163 ---~~~~~~~~~--~~----~~~-~~---~~~~~~~~~lfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~d~~~g~~rG~ 229 (274)
+........ +. ... .. ..-...+..+..++||+..++.++..+|+..-.+ .|.|-..+ +|+..|-
T Consensus 246 ~~~gs~~~~~~~~~~~~~g~~~~g~~g~~~~~~~~g~fv~MRGlpy~a~~~di~nfFspl~p~-~v~i~ig~-dGr~TGE 323 (510)
T KOG4211|consen 246 GNFGSYGGGRDPNYPVSSGPHRQGGAGDYGNGGPGGHFVHMRGLPYDATENDIANFFSPLNPY-RVHIEIGP-DGRATGE 323 (510)
T ss_pred ccccccccccccccCCCCCcccCCCcccccCCCCCCceeeecCCCccCCCcchhhhcCCCCce-eEEEEeCC-CCccCCc
Confidence 000000000 00 000 00 0011123678889999999999999999987554 66666655 7899999
Q ss_pred EEEEeCCHHHHHHHHHHhCCceeCCEEeEEEee
Q 024012 230 AFIEYTTEEAASAALKEMNGKIINGWMIVVDVA 262 (274)
Q Consensus 230 aFV~F~s~~~A~~Ai~~l~g~~l~G~~l~V~~a 262 (274)
|+|+|.|.++|..|+. -++..++.+-|.+-.-
T Consensus 324 AdveF~t~edav~Ams-kd~anm~hrYVElFln 355 (510)
T KOG4211|consen 324 ADVEFATGEDAVGAMG-KDGANMGHRYVELFLN 355 (510)
T ss_pred ceeecccchhhHhhhc-cCCcccCcceeeeccc
Confidence 9999999999999994 4788888777766543
No 109
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.85 E-value=1.6e-10 Score=90.54 Aligned_cols=72 Identities=14% Similarity=0.274 Sum_probs=64.2
Q ss_pred CCCCCCCCceeeeecCCCcceeEEecCCCCCCCCHHHHHHHHHHHHHhhhCCcccceEEE-ecCCCCCCeEEeeeCCHHH
Q 024012 57 NPWNSQIGTTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCI-YHVSWQSNFGFCCELDDEC 135 (274)
Q Consensus 57 ~~~~~~~~s~~lf~vgnl~~~~~~~~~p~~~~~t~~~L~~~F~~~l~~~~G~v~~v~i~~-~~~g~srgfgFV~f~~~e~ 135 (274)
.|++.-..|-.+| |||||+ +.||.+|.-.|+|+ |+|++|.+++ ..||+|+||||.+|++..+
T Consensus 27 SWH~~YkdsA~Iy-iggl~~-----------~LtEgDil~VFSqy-----Ge~vdinLiRDk~TGKSKGFaFLcYEDQRS 89 (219)
T KOG0126|consen 27 SWHQEYKDSAYIY-IGGLPY-----------ELTEGDILCVFSQY-----GEIVDINLIRDKKTGKSKGFAFLCYEDQRS 89 (219)
T ss_pred chhhhcccceEEE-ECCCcc-----------cccCCcEEEEeecc-----CceEEEEEEecCCCCcccceEEEEecCccc
Confidence 5666666788899 999999 79999999999999 9999999888 5799999999999999998
Q ss_pred H-HHHHCCCCc
Q 024012 136 A-QELTGVPGV 145 (274)
Q Consensus 136 a-~~a~~~~g~ 145 (274)
. -|+-.+||.
T Consensus 90 TILAVDN~NGi 100 (219)
T KOG0126|consen 90 TILAVDNLNGI 100 (219)
T ss_pred eEEEEeccCCc
Confidence 8 777788886
No 110
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=98.83 E-value=6.9e-09 Score=83.12 Aligned_cols=68 Identities=10% Similarity=0.112 Sum_probs=56.3
Q ss_pred CCCceeeeecCCCcceeEEecCCCCCCCCHHHHHHHHHHHHHhhhCCcccceEEE-ecCCCCCCeEEeeeCCHHHHHHH-
Q 024012 62 QIGTTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCI-YHVSWQSNFGFCCELDDECAQEL- 139 (274)
Q Consensus 62 ~~~s~~lf~vgnl~~~~~~~~~p~~~~~t~~~L~~~F~~~l~~~~G~v~~v~i~~-~~~g~srgfgFV~f~~~e~a~~a- 139 (274)
++.+.+.+.|-||.+ .+|.++|+.+|+++ |.|.||.|.. ..|++++|||||.|.+..+|+.|
T Consensus 9 dv~gm~SLkVdNLTy-----------RTspd~LrrvFekY-----G~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~ 72 (256)
T KOG4207|consen 9 DVEGMTSLKVDNLTY-----------RTSPDDLRRVFEKY-----GRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDAL 72 (256)
T ss_pred CcccceeEEecceec-----------cCCHHHHHHHHHHh-----CcccceecccccccccccceeEEEeeecchHHHHH
Confidence 344444444999999 59999999999999 9999999998 56899999999999999999544
Q ss_pred HCCCCc
Q 024012 140 TGVPGV 145 (274)
Q Consensus 140 ~~~~g~ 145 (274)
..|+|.
T Consensus 73 damDG~ 78 (256)
T KOG4207|consen 73 DAMDGA 78 (256)
T ss_pred Hhhcce
Confidence 456774
No 111
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.80 E-value=9.7e-09 Score=95.34 Aligned_cols=84 Identities=27% Similarity=0.456 Sum_probs=75.9
Q ss_pred CccccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCC---CCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEeE
Q 024012 182 QIKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKI---SKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIV 258 (274)
Q Consensus 182 ~~~~~~lfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~d~~---~g~~rG~aFV~F~s~~~A~~Ai~~l~g~~l~G~~l~ 258 (274)
++.+++|||+||++.++++.|...|..||+|..++|+..+. ....+.+|||-|-+..+|++|++.|+|..+.+..++
T Consensus 171 DP~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~K 250 (877)
T KOG0151|consen 171 DPQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYEMK 250 (877)
T ss_pred CCcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeeeee
Confidence 45688999999999999999999999999999999987652 345678999999999999999999999999999999
Q ss_pred EEeecCC
Q 024012 259 VDVAKTT 265 (274)
Q Consensus 259 V~~a~~~ 265 (274)
+-|+++-
T Consensus 251 ~gWgk~V 257 (877)
T KOG0151|consen 251 LGWGKAV 257 (877)
T ss_pred ecccccc
Confidence 9999764
No 112
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=98.79 E-value=1.4e-08 Score=85.50 Aligned_cols=59 Identities=8% Similarity=0.104 Sum_probs=53.6
Q ss_pred eeeeecCCCcceeEEecCCCCCCCCHHHHHHHHHHHHHhhhCCcccceEEEe-cCCCCCCeEEeeeCCHHHHHHHHC
Q 024012 66 TLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIY-HVSWQSNFGFCCELDDECAQELTG 141 (274)
Q Consensus 66 ~~lf~vgnl~~~~~~~~~p~~~~~t~~~L~~~F~~~l~~~~G~v~~v~i~~~-~~g~srgfgFV~f~~~e~a~~a~~ 141 (274)
.||| |+-|++ +++|.+|+..|+.+ |.|+.++|+.+ -+|+++|||||+|.++.+..+|.+
T Consensus 102 ~TLF-v~RLny-----------dT~EskLrreF~~Y-----G~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK 161 (335)
T KOG0113|consen 102 KTLF-VARLNY-----------DTSESKLRREFEKY-----GPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYK 161 (335)
T ss_pred ceee-eeeccc-----------cccHHHHHHHHHhc-----CcceeEEEeeecccCCccceEEEEeccHHHHHHHHH
Confidence 5799 999999 79999999999977 99999998885 789999999999999999976654
No 113
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.79 E-value=1.1e-08 Score=73.16 Aligned_cols=66 Identities=14% Similarity=0.177 Sum_probs=54.5
Q ss_pred CCCCceeeeecCCCcceeEEecCCCCCCCCHHHHHHHHHHHHHhhhCCcccceEEEecCCCCCCeEEeeeCCHHHHHHH-
Q 024012 61 SQIGTTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIYHVSWQSNFGFCCELDDECAQEL- 139 (274)
Q Consensus 61 ~~~~s~~lf~vgnl~~~~~~~~~p~~~~~t~~~L~~~F~~~l~~~~G~v~~v~i~~~~~g~srgfgFV~f~~~e~a~~a- 139 (274)
++...+.|| |.|||+ ++|.+++.++|+++ |.|..||+- .+...+|-|||.|++..+|++|
T Consensus 14 ppevnriLy-irNLp~-----------~ITseemydlFGky-----g~IrQIRiG--~~k~TrGTAFVVYedi~dAk~A~ 74 (124)
T KOG0114|consen 14 PPEVNRILY-IRNLPF-----------KITSEEMYDLFGKY-----GTIRQIRIG--NTKETRGTAFVVYEDIFDAKKAC 74 (124)
T ss_pred ChhhheeEE-EecCCc-----------cccHHHHHHHhhcc-----cceEEEEec--CccCcCceEEEEehHhhhHHHHH
Confidence 444556677 999999 79999999999988 999888877 6777899999999999999555
Q ss_pred HCCCCc
Q 024012 140 TGVPGV 145 (274)
Q Consensus 140 ~~~~g~ 145 (274)
..|.|.
T Consensus 75 dhlsg~ 80 (124)
T KOG0114|consen 75 DHLSGY 80 (124)
T ss_pred HHhccc
Confidence 445553
No 114
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.78 E-value=5e-09 Score=95.01 Aligned_cols=75 Identities=29% Similarity=0.418 Sum_probs=67.4
Q ss_pred CCCCccccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEeE
Q 024012 179 SPTQIKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIV 258 (274)
Q Consensus 179 ~~~~~~~~~lfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~d~~~g~~rG~aFV~F~s~~~A~~Ai~~l~g~~l~G~~l~ 258 (274)
...+....+|+|-|||..+++++|+.+|+.||+|..|+.-+. .+|..||+|-+.-+|++|+++|++..+.|++|+
T Consensus 69 ~~~~~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t~~-----~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k 143 (549)
T KOG4660|consen 69 SEKDMNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRETPN-----KRGIVFVEFYDVRDAERALKALNRREIAGKRIK 143 (549)
T ss_pred CcccCccceEEEEecCCcCCHHHHHHHHHhhcchhhhhcccc-----cCceEEEEEeehHhHHHHHHHHHHHHhhhhhhc
Confidence 334556889999999999999999999999999999766444 588999999999999999999999999999988
No 115
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=98.76 E-value=1.4e-07 Score=81.82 Aligned_cols=165 Identities=16% Similarity=0.173 Sum_probs=111.0
Q ss_pred CceeeeecCCCcceeEEecCCCCCCCCHHHHHHHHHHHHHhhhCCcccceEEEecCCCCCCeEEeeeCCHHHHHHHHCCC
Q 024012 64 GTTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIYHVSWQSNFGFCCELDDECAQELTGVP 143 (274)
Q Consensus 64 ~s~~lf~vgnl~~~~~~~~~p~~~~~t~~~L~~~F~~~l~~~~G~v~~v~i~~~~~g~srgfgFV~f~~~e~a~~a~~~~ 143 (274)
.|..+- |.+|-- .++|.+|.+..+.+ |.|.=+.++ ..+.-|.|+|+|.+.|++...+.
T Consensus 30 ~spvvh-vr~l~~-----------~v~eadl~eal~~f-----G~i~yvt~~-----P~~r~alvefedi~~akn~Vnfa 87 (494)
T KOG1456|consen 30 PSPVVH-VRGLHQ-----------GVVEADLVEALSNF-----GPIAYVTCM-----PHKRQALVEFEDIEGAKNCVNFA 87 (494)
T ss_pred CCceEE-Eecccc-----------ccchhHHHHHHhcC-----CceEEEEec-----cccceeeeeeccccchhhheehh
Confidence 344455 777777 69999999988866 998544444 23668999999999998776542
Q ss_pred C--ceeecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccEEEEc--CCCCCCCHHHHHHHHhccCCeEEEEEEe
Q 024012 144 G--VLSVQPDENFGSENKDYGGNNLQNSMVPSDSSEASPTQIKTKKLFVT--GLSFYTSEKTLRAAFEGFGELVEVKIIM 219 (274)
Q Consensus 144 g--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~--nLp~~~te~~L~~~F~~fG~i~~v~i~~ 219 (274)
- .+.+.- ...+ ...+....-.........+++.|.+. |--+.+|.+-|..++...|.|.+|.|.+
T Consensus 88 a~n~i~i~g-------q~Al----~NyStsq~i~R~g~es~~pN~VLl~TIlNp~YpItvDVly~Icnp~GkVlRIvIfk 156 (494)
T KOG1456|consen 88 ADNQIYIAG-------QQAL----FNYSTSQCIERPGDESATPNKVLLFTILNPQYPITVDVLYTICNPQGKVLRIVIFK 156 (494)
T ss_pred ccCcccccC-------chhh----cccchhhhhccCCCCCCCCCeEEEEEeecCccccchhhhhhhcCCCCceEEEEEEe
Confidence 1 110000 0000 00000000000112223335555544 4455689999999999999999998886
Q ss_pred cCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeC-C-EEeEEEeecCCC
Q 024012 220 DKISKRSKGYAFIEYTTEEAASAALKEMNGKIIN-G-WMIVVDVAKTTP 266 (274)
Q Consensus 220 d~~~g~~rG~aFV~F~s~~~A~~Ai~~l~g~~l~-G-~~l~V~~a~~~~ 266 (274)
. +|. .|.|+|++.+.|++|..+|||..|. | .+|+|+||+|.+
T Consensus 157 k--ngV---QAmVEFdsv~~AqrAk~alNGADIYsGCCTLKIeyAkP~r 200 (494)
T KOG1456|consen 157 K--NGV---QAMVEFDSVEVAQRAKAALNGADIYSGCCTLKIEYAKPTR 200 (494)
T ss_pred c--cce---eeEEeechhHHHHHHHhhcccccccccceeEEEEecCcce
Confidence 5 444 7999999999999999999999875 4 789999999853
No 116
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=98.75 E-value=1.1e-08 Score=83.81 Aligned_cols=73 Identities=22% Similarity=0.570 Sum_probs=67.4
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEeEEEeecCC
Q 024012 186 KKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVDVAKTT 265 (274)
Q Consensus 186 ~~lfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~d~~~g~~rG~aFV~F~s~~~A~~Ai~~l~g~~l~G~~l~V~~a~~~ 265 (274)
..+||++||+.+.+.+|..+|..||.+.++.+. .||+||+|.+.-+|.-|+..|||.+|.|-++.|+|++..
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk--------~gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~~ 73 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADMK--------NGFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARGK 73 (216)
T ss_pred CceeecccCCccchhHHHHHHhhccccccceee--------cccceeccCchhhhhcccchhcCceecceeeeeeccccc
Confidence 369999999999999999999999999999775 359999999999999999999999999988999999965
Q ss_pred C
Q 024012 266 P 266 (274)
Q Consensus 266 ~ 266 (274)
.
T Consensus 74 ~ 74 (216)
T KOG0106|consen 74 R 74 (216)
T ss_pred c
Confidence 3
No 117
>PLN03213 repressor of silencing 3; Provisional
Probab=98.73 E-value=1.7e-08 Score=90.28 Aligned_cols=62 Identities=11% Similarity=0.228 Sum_probs=51.7
Q ss_pred CceeeeecCCCcceeEEecCCCCCCCCHHHHHHHHHHHHHhhhCCcccceEEEecCCCCCCeEEeeeCCH--HHH-HHHH
Q 024012 64 GTTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIYHVSWQSNFGFCCELDD--ECA-QELT 140 (274)
Q Consensus 64 ~s~~lf~vgnl~~~~~~~~~p~~~~~t~~~L~~~F~~~l~~~~G~v~~v~i~~~~~g~srgfgFV~f~~~--e~a-~~a~ 140 (274)
.+..|| ||||++ ++|+++|...|.++ |.|.+|.|+ +.+| ||||||+|.+. +++ .++-
T Consensus 9 ~gMRIY-VGNLSy-----------dVTEDDLravFSeF-----GsVkdVEIp-RETG--RGFAFVEMssdddaEeeKAIS 68 (759)
T PLN03213 9 GGVRLH-VGGLGE-----------SVGRDDLLKIFSPM-----GTVDAVEFV-RTKG--RSFAYIDFSPSSTNSLTKLFS 68 (759)
T ss_pred cceEEE-EeCCCC-----------CCCHHHHHHHHHhc-----CCeeEEEEe-cccC--CceEEEEecCCcHHHHHHHHH
Confidence 446688 999999 79999999999988 999999998 5567 99999999987 455 4444
Q ss_pred CCCCc
Q 024012 141 GVPGV 145 (274)
Q Consensus 141 ~~~g~ 145 (274)
.|||.
T Consensus 69 aLNGA 73 (759)
T PLN03213 69 TYNGC 73 (759)
T ss_pred HhcCC
Confidence 57764
No 118
>smart00362 RRM_2 RNA recognition motif.
Probab=98.72 E-value=3.4e-08 Score=66.44 Aligned_cols=59 Identities=19% Similarity=0.278 Sum_probs=50.3
Q ss_pred eeecCCCcceeEEecCCCCCCCCHHHHHHHHHHHHHhhhCCcccceEEEecCCCCCCeEEeeeCCHHHHHHHHC-CCC
Q 024012 68 LFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIYHVSWQSNFGFCCELDDECAQELTG-VPG 144 (274)
Q Consensus 68 lf~vgnl~~~~~~~~~p~~~~~t~~~L~~~F~~~l~~~~G~v~~v~i~~~~~g~srgfgFV~f~~~e~a~~a~~-~~g 144 (274)
++ ++|+|. .+++++|+++|.++ |.+.++++.... +.++|+|||+|.+.++|++|+. ++|
T Consensus 2 v~-i~~l~~-----------~~~~~~l~~~~~~~-----g~v~~~~~~~~~-~~~~~~~~v~f~~~~~a~~a~~~~~~ 61 (72)
T smart00362 2 LF-VGNLPP-----------DVTEEDLKELFSKF-----GPIESVKIPKDT-GKSKGFAFVEFESEEDAEKAIEALNG 61 (72)
T ss_pred EE-EcCCCC-----------cCCHHHHHHHHHhc-----CCEEEEEEecCC-CCCCceEEEEeCCHHHHHHHHHHhCC
Confidence 56 889988 59999999999977 999999888765 7889999999999999966664 444
No 119
>smart00360 RRM RNA recognition motif.
Probab=98.69 E-value=6e-08 Score=64.94 Aligned_cols=55 Identities=15% Similarity=0.220 Sum_probs=47.5
Q ss_pred cCCCcceeEEecCCCCCCCCHHHHHHHHHHHHHhhhCCcccceEEEec-CCCCCCeEEeeeCCHHHHHHHHC
Q 024012 71 LGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIYH-VSWQSNFGFCCELDDECAQELTG 141 (274)
Q Consensus 71 vgnl~~~~~~~~~p~~~~~t~~~L~~~F~~~l~~~~G~v~~v~i~~~~-~g~srgfgFV~f~~~e~a~~a~~ 141 (274)
|+|+|. .+++++|+++|.++ |.|.++.+.... ++.++|||||+|.+.++|.+|+.
T Consensus 1 i~~l~~-----------~~~~~~l~~~f~~~-----g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~ 56 (71)
T smart00360 1 VGNLPP-----------DVTEEELRELFSKF-----GKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALE 56 (71)
T ss_pred CCCCCc-----------ccCHHHHHHHHHhh-----CCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHH
Confidence 467777 59999999999987 999999988754 58899999999999999977764
No 120
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=98.69 E-value=8e-09 Score=83.45 Aligned_cols=80 Identities=19% Similarity=0.170 Sum_probs=72.5
Q ss_pred ccccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEeEEEee
Q 024012 183 IKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVDVA 262 (274)
Q Consensus 183 ~~~~~lfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~d~~~g~~rG~aFV~F~s~~~A~~Ai~~l~g~~l~G~~l~V~~a 262 (274)
...++|||+|+...++|+-|.++|-+-|+|..|.|..++ .++.+ ||||.|.++....-|++.|||..+.++.+++.+-
T Consensus 7 e~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~-d~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~~r 84 (267)
T KOG4454|consen 7 EMDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQ-DQEQK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQRTLR 84 (267)
T ss_pred chhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCc-cCCCc-eeeeecccccchhhhhhhcccchhccchhhcccc
Confidence 347899999999999999999999999999999998877 56667 9999999999999999999999999999888875
Q ss_pred cC
Q 024012 263 KT 264 (274)
Q Consensus 263 ~~ 264 (274)
..
T Consensus 85 ~G 86 (267)
T KOG4454|consen 85 CG 86 (267)
T ss_pred cC
Confidence 43
No 121
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=98.65 E-value=7.3e-08 Score=82.30 Aligned_cols=62 Identities=13% Similarity=0.201 Sum_probs=52.0
Q ss_pred eeeeecCCCcceeEEecCCCCCCCCHHHHHHHHHHHHHhhhCCcccceEEEecCCCCCCeEEeeeCCHHHHHHHH-CCCC
Q 024012 66 TLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIYHVSWQSNFGFCCELDDECAQELT-GVPG 144 (274)
Q Consensus 66 ~~lf~vgnl~~~~~~~~~p~~~~~t~~~L~~~F~~~l~~~~G~v~~v~i~~~~~g~srgfgFV~f~~~e~a~~a~-~~~g 144 (274)
+.|. |.|+|+ .--|.||+..|+++ |+|.||-|+-. ...|||||||+|++.++|++|. +++|
T Consensus 97 kRLh-VSNIPF-----------rFRdpDL~aMF~kf-----G~VldVEIIfN-ERGSKGFGFVTmen~~dadRARa~LHg 158 (376)
T KOG0125|consen 97 KRLH-VSNIPF-----------RFRDPDLRAMFEKF-----GKVLDVEIIFN-ERGSKGFGFVTMENPADADRARAELHG 158 (376)
T ss_pred ceeE-eecCCc-----------cccCccHHHHHHhh-----CceeeEEEEec-cCCCCccceEEecChhhHHHHHHHhhc
Confidence 3466 899999 68999999999988 99999998854 4457999999999999996665 5676
Q ss_pred c
Q 024012 145 V 145 (274)
Q Consensus 145 ~ 145 (274)
.
T Consensus 159 t 159 (376)
T KOG0125|consen 159 T 159 (376)
T ss_pred c
Confidence 4
No 122
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=98.60 E-value=6.4e-08 Score=77.70 Aligned_cols=65 Identities=11% Similarity=0.116 Sum_probs=54.4
Q ss_pred eeecCCCcceeEEecCCCCCCCCHHHHHHHHHHHHHhhhCCcccceEEE-ecCCCCCCeEEeeeCCHHHH-HHHHCCCCc
Q 024012 68 LFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCI-YHVSWQSNFGFCCELDDECA-QELTGVPGV 145 (274)
Q Consensus 68 lf~vgnl~~~~~~~~~p~~~~~t~~~L~~~F~~~l~~~~G~v~~v~i~~-~~~g~srgfgFV~f~~~e~a-~~a~~~~g~ 145 (274)
+..++.+|+ -+-+.++..+|.|+ .|.+..+|+.+ ..||.|+|||||+|++++.| -+|..||+.
T Consensus 51 ~~~~~~~p~-----------g~~e~~~~~~~~q~----~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNY 115 (214)
T KOG4208|consen 51 VVYVDHIPH-----------GFFETEILNYFRQF----GGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNY 115 (214)
T ss_pred ceeeccccc-----------chhHHHHhhhhhhc----CCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhh
Confidence 444888888 58899999998876 27778888855 78999999999999999999 788889987
Q ss_pred ee
Q 024012 146 LS 147 (274)
Q Consensus 146 ~~ 147 (274)
+.
T Consensus 116 Ll 117 (214)
T KOG4208|consen 116 LL 117 (214)
T ss_pred hh
Confidence 64
No 123
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=98.58 E-value=6.9e-08 Score=87.65 Aligned_cols=63 Identities=19% Similarity=0.388 Sum_probs=55.9
Q ss_pred eeeeecCCCcceeEEecCCCCCCCCHHHHHHHHHHHHHhhhCCcccceEEE-ecCCCCCCeEEeeeCCHHHH-HHHHCCC
Q 024012 66 TLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCI-YHVSWQSNFGFCCELDDECA-QELTGVP 143 (274)
Q Consensus 66 ~~lf~vgnl~~~~~~~~~p~~~~~t~~~L~~~F~~~l~~~~G~v~~v~i~~-~~~g~srgfgFV~f~~~e~a-~~a~~~~ 143 (274)
..+| |||+|+ ++++++|.++|.+. |.|.++++.. ..+|+.+|||||+|.+.++| .++..+|
T Consensus 19 ~~v~-vgnip~-----------~~se~~l~~~~~~~-----g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lN 81 (435)
T KOG0108|consen 19 SSVF-VGNIPY-----------EGSEEQLLSIFSGV-----GPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLN 81 (435)
T ss_pred cceE-ecCCCC-----------cccHHHHHHHHhcc-----CccceeeecccccCCCcCceeeEecCchhhHHHHHHhcC
Confidence 6689 999999 79999999999988 9999999776 57899999999999999999 5556678
Q ss_pred Cc
Q 024012 144 GV 145 (274)
Q Consensus 144 g~ 145 (274)
|.
T Consensus 82 g~ 83 (435)
T KOG0108|consen 82 GA 83 (435)
T ss_pred Cc
Confidence 64
No 124
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=98.58 E-value=8.3e-08 Score=75.08 Aligned_cols=60 Identities=17% Similarity=0.219 Sum_probs=50.9
Q ss_pred ceeeeecCCCcceeEEecCCCCCCCCHHHHHHHHHHHHHhhhCCcccceEEEecCCCCCCeEEeeeCCHHHH-HHHHCCC
Q 024012 65 TTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIYHVSWQSNFGFCCELDDECA-QELTGVP 143 (274)
Q Consensus 65 s~~lf~vgnl~~~~~~~~~p~~~~~t~~~L~~~F~~~l~~~~G~v~~v~i~~~~~g~srgfgFV~f~~~e~a-~~a~~~~ 143 (274)
.+.++ ||||+. .+|+.||...|..+ |.+.+|.|-. ...|||||+|+++.+| .|+..|+
T Consensus 10 ~~kVY-VGnL~~-----------~a~k~eLE~~F~~y-----G~lrsvWvAr----nPPGfAFVEFed~RDA~DAvr~LD 68 (195)
T KOG0107|consen 10 NTKVY-VGNLGS-----------RATKRELERAFSKY-----GPLRSVWVAR----NPPGFAFVEFEDPRDAEDAVRYLD 68 (195)
T ss_pred CceEE-eccCCC-----------CcchHHHHHHHHhc-----CcceeEEEee----cCCCceEEeccCcccHHHHHhhcC
Confidence 34567 999999 79999999999966 9999998875 3479999999999999 6666778
Q ss_pred Cc
Q 024012 144 GV 145 (274)
Q Consensus 144 g~ 145 (274)
|.
T Consensus 69 G~ 70 (195)
T KOG0107|consen 69 GK 70 (195)
T ss_pred Cc
Confidence 74
No 125
>smart00361 RRM_1 RNA recognition motif.
Probab=98.53 E-value=1.4e-07 Score=64.34 Aligned_cols=55 Identities=9% Similarity=0.044 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHHhhhCCcccce-EEE-ecC--CCCCCeEEeeeCCHHHHHHHH-CCCCce
Q 024012 91 KAQMVDRYAQILTKVLGNEKDAQ-MCI-YHV--SWQSNFGFCCELDDECAQELT-GVPGVL 146 (274)
Q Consensus 91 ~~~L~~~F~~~l~~~~G~v~~v~-i~~-~~~--g~srgfgFV~f~~~e~a~~a~-~~~g~~ 146 (274)
+++|+++|.+...+ ||.|.++. +.. ..+ +.++|||||+|.+.++|.+|+ .|+|..
T Consensus 2 ~~~l~~~~~~~~~~-fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~ 61 (70)
T smart00361 2 DEDFEREFSEEEEY-FGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRY 61 (70)
T ss_pred chhHHHHHHHHHHh-cCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCE
Confidence 57889988833222 29999996 444 445 889999999999999996655 467743
No 126
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=98.49 E-value=3.7e-07 Score=61.64 Aligned_cols=57 Identities=19% Similarity=0.289 Sum_probs=49.6
Q ss_pred eeecCCCcceeEEecCCCCCCCCHHHHHHHHHHHHHhhhCCcccceEEEecCCCCCCeEEeeeCCHHHHHHHHC
Q 024012 68 LFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIYHVSWQSNFGFCCELDDECAQELTG 141 (274)
Q Consensus 68 lf~vgnl~~~~~~~~~p~~~~~t~~~L~~~F~~~l~~~~G~v~~v~i~~~~~g~srgfgFV~f~~~e~a~~a~~ 141 (274)
++ ++|||. .+++++|+++|.++ |.+..+.+.....+..+|+|||+|.+.++|+.|+.
T Consensus 2 i~-i~~l~~-----------~~~~~~i~~~~~~~-----g~i~~~~~~~~~~~~~~~~~~v~f~s~~~a~~a~~ 58 (74)
T cd00590 2 LF-VGNLPP-----------DVTEEDLRELFSKF-----GKVESVRIVRDKDTKSKGFAFVEFEDEEDAEKALE 58 (74)
T ss_pred EE-EeCCCC-----------ccCHHHHHHHHHhc-----CCEEEEEEeeCCCCCcceEEEEEECCHHHHHHHHH
Confidence 55 888888 49999999999977 99999998877666889999999999999966654
No 127
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=98.45 E-value=4.7e-06 Score=72.80 Aligned_cols=172 Identities=13% Similarity=0.148 Sum_probs=105.1
Q ss_pred CCCCceeeeecCCCcceeEEecCCCCCCCCHHHHHHHHHHHHHhhhCCcccce-EEEecCCCCCCeEEeeeCCHHHHHHH
Q 024012 61 SQIGTTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQ-MCIYHVSWQSNFGFCCELDDECAQEL 139 (274)
Q Consensus 61 ~~~~s~~lf~vgnl~~~~~~~~~p~~~~~t~~~L~~~F~~~l~~~~G~v~~v~-i~~~~~g~srgfgFV~f~~~e~a~~a 139 (274)
...+.+++.....||. ..++.++..+|.-. ....--+ ++....|+..|.|.|.|.|+|.-+-+
T Consensus 55 ~~~~~~vvvRaRglpw-----------q~Sd~~ia~ff~gl-----~ia~gg~aKOG~~qgrRnge~lvrf~d~e~Rdla 118 (508)
T KOG1365|consen 55 HSADDNVVVRARGLPW-----------QSSDQDIARFFKGL-----NIANGGRALCLNAQGRRNGEALVRFVDPEGRDLA 118 (508)
T ss_pred cccCcceEEEecCCCC-----------CcccCCHHHHHhhh-----hccccceeeeehhhhccccceEEEecCchhhhhh
Confidence 4456777887899998 58999999988843 1122122 44456788889999999998887666
Q ss_pred HCCCCc-eeecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC--CCCccccEEEEcCCCCCCCHHHHHHHHhcc----CCe
Q 024012 140 TGVPGV-LSVQPDENFGSENKDYGGNNLQNSMVPSDSSEAS--PTQIKTKKLFVTGLSFYTSEKTLRAAFEGF----GEL 212 (274)
Q Consensus 140 ~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~lfV~nLp~~~te~~L~~~F~~f----G~i 212 (274)
++-... +..+....+......+.. . ..-.+.... .....--.|-++|||+++++.++.++|.+- |..
T Consensus 119 lkRhkhh~g~ryievYka~ge~f~~----i--agg~s~e~~~flsk~~qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~ 192 (508)
T KOG1365|consen 119 LKRHKHHMGTRYIEVYKATGEEFLK----I--AGGTSNEAAPFLSKENQVIVRMRGLPFDATALDVVEFFGPPCPVTGGT 192 (508)
T ss_pred hHhhhhhccCCceeeeccCchhheE----e--cCCccccCCCCCCcccceEEEecCCCCCcchHHHHHhcCCCCcccCCc
Confidence 653211 111111111111110000 0 000000001 111123456778999999999999999732 345
Q ss_pred EEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEE
Q 024012 213 VEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWM 256 (274)
Q Consensus 213 ~~v~i~~d~~~g~~rG~aFV~F~s~~~A~~Ai~~l~g~~l~G~~ 256 (274)
+.|-++..+ +|+..|-|||.|..+++|+.|+.+ |...++-|.
T Consensus 193 egvLFV~rp-dgrpTGdAFvlfa~ee~aq~aL~k-hrq~iGqRY 234 (508)
T KOG1365|consen 193 EGVLFVTRP-DGRPTGDAFVLFACEEDAQFALRK-HRQNIGQRY 234 (508)
T ss_pred cceEEEECC-CCCcccceEEEecCHHHHHHHHHH-HHHHHhHHH
Confidence 566555544 789999999999999999999965 444444333
No 128
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=98.44 E-value=1.5e-05 Score=69.60 Aligned_cols=78 Identities=24% Similarity=0.245 Sum_probs=69.5
Q ss_pred ccccEEEEcCCCCC-CCHHHHHHHHhccCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEeEEEe
Q 024012 183 IKTKKLFVTGLSFY-TSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVDV 261 (274)
Q Consensus 183 ~~~~~lfV~nLp~~-~te~~L~~~F~~fG~i~~v~i~~d~~~g~~rG~aFV~F~s~~~A~~Ai~~l~g~~l~G~~l~V~~ 261 (274)
.++..+.|-+|... ++-+.|..+|=.||.|++|++++.+ .|-|.|++.+..+.++|+..||+..+-|.+|.|..
T Consensus 285 ~~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkTk-----~gtamVemgd~~aver~v~hLnn~~lfG~kl~v~~ 359 (494)
T KOG1456|consen 285 APGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKTK-----PGTAMVEMGDAYAVERAVTHLNNIPLFGGKLNVCV 359 (494)
T ss_pred CCCcEEEEEeccccccchhhhhhhhhhcCceeeEEEeecc-----cceeEEEcCcHHHHHHHHHHhccCccccceEEEee
Confidence 45678999999865 5778999999999999999999865 46899999999999999999999999999999998
Q ss_pred ecCC
Q 024012 262 AKTT 265 (274)
Q Consensus 262 a~~~ 265 (274)
++..
T Consensus 360 SkQ~ 363 (494)
T KOG1456|consen 360 SKQN 363 (494)
T ss_pred cccc
Confidence 8754
No 129
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.42 E-value=1.2e-07 Score=76.71 Aligned_cols=66 Identities=21% Similarity=0.279 Sum_probs=56.3
Q ss_pred CCceeeeecCCCcceeEEecCCCCCCCCHHHHHHHHHHHHHhhhCCcccceEEE-ecCCCCCCeEEeeeCCHHHHHHH-H
Q 024012 63 IGTTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCI-YHVSWQSNFGFCCELDDECAQEL-T 140 (274)
Q Consensus 63 ~~s~~lf~vgnl~~~~~~~~~p~~~~~t~~~L~~~F~~~l~~~~G~v~~v~i~~-~~~g~srgfgFV~f~~~e~a~~a-~ 140 (274)
...++|+ ||.|-. +||+.-|...|. +||.|++|.+.. +.++++||||||+|.-.|+|.+| -
T Consensus 8 ~~KrtlY-VGGlad-----------eVtekvLhaAFI-----PFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiD 70 (298)
T KOG0111|consen 8 NQKRTLY-VGGLAD-----------EVTEKVLHAAFI-----PFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAID 70 (298)
T ss_pred ccceeEE-eccchH-----------HHHHHHHHhccc-----cccchhhcccccchhcccccceeEEEeeccchhHHHhh
Confidence 3567888 999999 799999999999 559999999888 57788999999999999999555 4
Q ss_pred CCCCc
Q 024012 141 GVPGV 145 (274)
Q Consensus 141 ~~~g~ 145 (274)
.||+.
T Consensus 71 NMnes 75 (298)
T KOG0111|consen 71 NMNES 75 (298)
T ss_pred cCchh
Confidence 67753
No 130
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=98.38 E-value=1.6e-06 Score=80.87 Aligned_cols=167 Identities=13% Similarity=-0.009 Sum_probs=111.6
Q ss_pred CCCHHHHHHHHHHHHHhhhC-CcccceEEEecCCCC-CCeEEeeeCCHHHHHHHHCCCCceeecCCC-CCCCCCCCCC--
Q 024012 88 VVTKAQMVDRYAQILTKVLG-NEKDAQMCIYHVSWQ-SNFGFCCELDDECAQELTGVPGVLSVQPDE-NFGSENKDYG-- 162 (274)
Q Consensus 88 ~~t~~~L~~~F~~~l~~~~G-~v~~v~i~~~~~g~s-rgfgFV~f~~~e~a~~a~~~~g~~~~~~~~-~~~~~~~~~~-- 162 (274)
...+.+++++|. | .+.++.+.....+.+ .|-++|+|....++++|++-|.++.+.+.- ........+.
T Consensus 322 n~~~nd~rkfF~-------g~~~~~~~l~~~~v~~~~tG~~~v~f~~~~~~q~A~~rn~~~~~~R~~q~~P~g~~~~~~a 394 (944)
T KOG4307|consen 322 NNDFNDGRKFFP-------GRNAQSTDLSENRVAPPQTGRKTVMFTPQAPFQNAFTRNPSDDVNRPFQTGPPGNLGRNGA 394 (944)
T ss_pred ccccchhhhhcC-------cccccccchhhhhcCCCcCCceEEEecCcchHHHHHhcCchhhhhcceeecCCCccccccC
Confidence 589999999998 5 445555666667776 699999999999999998876543322111 0000000000
Q ss_pred CCC--------CCC---CCCCCCC------CCCCCCCccccEEEEcCCCCCCCHHHHHHHHhccCCeEE-EEEEecCCCC
Q 024012 163 GNN--------LQN---SMVPSDS------SEASPTQIKTKKLFVTGLSFYTSEKTLRAAFEGFGELVE-VKIIMDKISK 224 (274)
Q Consensus 163 ~~~--------~~~---~~~~~~~------~~~~~~~~~~~~lfV~nLp~~~te~~L~~~F~~fG~i~~-v~i~~d~~~g 224 (274)
... .+. ....... .........+..|||.+||..+++.++.+.|+.--.|++ |.|.+-+ ++
T Consensus 395 ~~~~~~~~~~~~~~~hg~p~~~pr~~~~~gq~vp~P~~ag~~lyv~~lP~~t~~~~~v~~f~~~~~Ved~I~lt~~P-~~ 473 (944)
T KOG4307|consen 395 PPFQAGVPPPVIQNNHGRPIAPPRAMVRPGQNVPFPGGAGGALYVFQLPVMTPIVPPVNKFMGAAAVEDFIELTRLP-TD 473 (944)
T ss_pred ccccccCCCCcccccCCCCCCCcccccCCCCCCCCCCCccceEEeccCCccccccchhhhhhhhhhhhheeEeccCC-cc
Confidence 000 000 0000000 011122344779999999999999999999998777777 6666665 78
Q ss_pred CcceEEEEEeCCHHHHHHHHHHhCCceeCCEEeEEEee
Q 024012 225 RSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVDVA 262 (274)
Q Consensus 225 ~~rG~aFV~F~s~~~A~~Ai~~l~g~~l~G~~l~V~~a 262 (274)
+-++-|||.|..++++.+|..--+-+.++-+-|+|+-.
T Consensus 474 ~~~~~afv~F~~~~a~~~a~~~~~k~y~G~r~irv~si 511 (944)
T KOG4307|consen 474 LLRPAAFVAFIHPTAPLTASSVKTKFYPGHRIIRVDSI 511 (944)
T ss_pred cccchhhheeccccccchhhhcccccccCceEEEeech
Confidence 88999999999999999988666666677788888743
No 131
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=98.32 E-value=2.1e-06 Score=59.23 Aligned_cols=70 Identities=27% Similarity=0.397 Sum_probs=48.3
Q ss_pred cEEEEcCCCCCCCHHH----HHHHHhccC-CeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEeEEE
Q 024012 186 KKLFVTGLSFYTSEKT----LRAAFEGFG-ELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVD 260 (274)
Q Consensus 186 ~~lfV~nLp~~~te~~----L~~~F~~fG-~i~~v~i~~d~~~g~~rG~aFV~F~s~~~A~~Ai~~l~g~~l~G~~l~V~ 260 (274)
..|+|.|||.+.+... |++++..+| .|.+| + .|-|.|.|.+.+.|.+|.+.|+|..+-|++|.|+
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v-------~---~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~ 72 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSV-------S---GGTAILRFPNQEFAERAQKRMEGEDVFGNKISVS 72 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE------------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEE
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEE-------e---CCEEEEEeCCHHHHHHHHHhhcccccccceEEEE
Confidence 4699999999988655 567777875 46665 1 3479999999999999999999999999999999
Q ss_pred eecCC
Q 024012 261 VAKTT 265 (274)
Q Consensus 261 ~a~~~ 265 (274)
|....
T Consensus 73 ~~~~~ 77 (90)
T PF11608_consen 73 FSPKN 77 (90)
T ss_dssp SS--S
T ss_pred EcCCc
Confidence 98543
No 132
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=98.30 E-value=8.2e-07 Score=77.01 Aligned_cols=85 Identities=28% Similarity=0.314 Sum_probs=78.2
Q ss_pred CccccEEEEcCCCCCCCHHHHHHHHhccCCeE--------EEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeC
Q 024012 182 QIKTKKLFVTGLSFYTSEKTLRAAFEGFGELV--------EVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIIN 253 (274)
Q Consensus 182 ~~~~~~lfV~nLp~~~te~~L~~~F~~fG~i~--------~v~i~~d~~~g~~rG~aFV~F~s~~~A~~Ai~~l~g~~l~ 253 (274)
.....+|||-+||..+++++|.++|.++|.|. .|.|.+|++|+++||-|.|.|.+...|+.|+..++++.+.
T Consensus 63 ~s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~ 142 (351)
T KOG1995|consen 63 KSDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFC 142 (351)
T ss_pred ccccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhcccccc
Confidence 34477899999999999999999999999885 4778899999999999999999999999999999999999
Q ss_pred CEEeEEEeecCCC
Q 024012 254 GWMIVVDVAKTTP 266 (274)
Q Consensus 254 G~~l~V~~a~~~~ 266 (274)
|.+|+|.+|..+.
T Consensus 143 gn~ikvs~a~~r~ 155 (351)
T KOG1995|consen 143 GNTIKVSLAERRT 155 (351)
T ss_pred CCCchhhhhhhcc
Confidence 9999999998765
No 133
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=98.18 E-value=5.3e-06 Score=61.09 Aligned_cols=70 Identities=29% Similarity=0.407 Sum_probs=44.2
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCC-----ceeCCEEeEEE
Q 024012 186 KKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNG-----KIINGWMIVVD 260 (274)
Q Consensus 186 ~~lfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~d~~~g~~rG~aFV~F~s~~~A~~Ai~~l~g-----~~l~G~~l~V~ 260 (274)
..|.|.|++..++.++|++.|++||.|..|.+.+.. --|+|.|.+.++|++|+..+.- ..+.+..+.++
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G~------~~g~VRf~~~~~A~~a~~~~~~~~~~~~~i~~~~~~~~ 75 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRGD------TEGYVRFKTPEAAQKALEKLKEANDGKLKIKGKEVTLE 75 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT-------SEEEEEESS---HHHHHHHHHHTTTS-B-TTSSSEEEE
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCCC------CEEEEEECCcchHHHHHHHHHhccCCceEEcCceEEEE
Confidence 468899999999999999999999999999887542 2799999999999999998743 35566555554
Q ss_pred e
Q 024012 261 V 261 (274)
Q Consensus 261 ~ 261 (274)
.
T Consensus 76 v 76 (105)
T PF08777_consen 76 V 76 (105)
T ss_dssp -
T ss_pred E
Confidence 3
No 134
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=98.15 E-value=4.9e-06 Score=71.53 Aligned_cols=82 Identities=20% Similarity=0.441 Sum_probs=65.2
Q ss_pred cccEEEEcCCCCCCCHHH----H--HHHHhccCCeEEEEEEecCCC-CCcceEE--EEEeCCHHHHHHHHHHhCCceeCC
Q 024012 184 KTKKLFVTGLSFYTSEKT----L--RAAFEGFGELVEVKIIMDKIS-KRSKGYA--FIEYTTEEAASAALKEMNGKIING 254 (274)
Q Consensus 184 ~~~~lfV~nLp~~~te~~----L--~~~F~~fG~i~~v~i~~d~~~-g~~rG~a--FV~F~s~~~A~~Ai~~l~g~~l~G 254 (274)
...-+||-+||+.+..|+ | .++|.+||.|..|.|-+...+ +...+.+ ||+|.+.++|.+||.+.+|..++|
T Consensus 113 QKNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DG 192 (480)
T COG5175 113 QKNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDG 192 (480)
T ss_pred ecceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccC
Confidence 356689999999986665 3 478999999999877654311 1112333 999999999999999999999999
Q ss_pred EEeEEEeecCC
Q 024012 255 WMIVVDVAKTT 265 (274)
Q Consensus 255 ~~l~V~~a~~~ 265 (274)
|.|+..|...+
T Consensus 193 r~lkatYGTTK 203 (480)
T COG5175 193 RVLKATYGTTK 203 (480)
T ss_pred ceEeeecCchH
Confidence 99999998764
No 135
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=98.12 E-value=4.2e-06 Score=62.87 Aligned_cols=53 Identities=15% Similarity=0.252 Sum_probs=46.7
Q ss_pred CCCHHHHHHHHHHHHHhhhCCcccceEEE-ecCCCCCCeEEeeeCCHHHHHHHH-CCCCc
Q 024012 88 VVTKAQMVDRYAQILTKVLGNEKDAQMCI-YHVSWQSNFGFCCELDDECAQELT-GVPGV 145 (274)
Q Consensus 88 ~~t~~~L~~~F~~~l~~~~G~v~~v~i~~-~~~g~srgfgFV~f~~~e~a~~a~-~~~g~ 145 (274)
.+|++++.+.|..+ |+|+.+.+-. +.+|-.+|||.|+|++.+.|++|+ ++||.
T Consensus 83 EatEedi~d~F~dy-----GeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~ 137 (170)
T KOG0130|consen 83 EATEEDIHDKFADY-----GEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGA 137 (170)
T ss_pred chhHHHHHHHHhhc-----ccccceeeccccccccccceeeeehHhHHHHHHHHHhccch
Confidence 59999999999988 9999999776 678999999999999999997665 45764
No 136
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.10 E-value=3.3e-06 Score=73.00 Aligned_cols=67 Identities=15% Similarity=0.158 Sum_probs=57.5
Q ss_pred CCceeeeecCCCcceeEEecCCCCCCCCHHHHHHHHHHHHHhhhCCcccceEEE-ecCCCCCCeEEeeeCCHHHH-HHHH
Q 024012 63 IGTTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCI-YHVSWQSNFGFCCELDDECA-QELT 140 (274)
Q Consensus 63 ~~s~~lf~vgnl~~~~~~~~~p~~~~~t~~~L~~~F~~~l~~~~G~v~~v~i~~-~~~g~srgfgFV~f~~~e~a-~~a~ 140 (274)
++.+.|| |+.|.. .+|+++|.-+|+.+ |+|.+|.|++ ..+|.+--||||+|.+.+++ +|..
T Consensus 237 PPeNVLF-VCKLNP-----------VTtDeDLeiIFSrF-----G~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyF 299 (479)
T KOG0415|consen 237 PPENVLF-VCKLNP-----------VTTDEDLEIIFSRF-----GKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYF 299 (479)
T ss_pred CCcceEE-EEecCC-----------cccccchhhHHhhc-----ccceeeeEEecccccchhheeeeeecchhhHHHHHh
Confidence 4667899 888887 59999999999955 9999999888 57899999999999999999 5667
Q ss_pred CCCCce
Q 024012 141 GVPGVL 146 (274)
Q Consensus 141 ~~~g~~ 146 (274)
+|+.++
T Consensus 300 KMdNvL 305 (479)
T KOG0415|consen 300 KMDNVL 305 (479)
T ss_pred hhccee
Confidence 887654
No 137
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=97.99 E-value=5e-07 Score=79.65 Aligned_cols=150 Identities=14% Similarity=0.252 Sum_probs=106.5
Q ss_pred eeecCCCcceeEEecCCCCCCCCHHHHHHHHHHHHHhhhCCcccceEEEecCCCCCCeEEeeeCCHHHHH-HHHCCCCce
Q 024012 68 LFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIYHVSWQSNFGFCCELDDECAQ-ELTGVPGVL 146 (274)
Q Consensus 68 lf~vgnl~~~~~~~~~p~~~~~t~~~L~~~F~~~l~~~~G~v~~v~i~~~~~g~srgfgFV~f~~~e~a~-~a~~~~g~~ 146 (274)
|+ +|||.. .++..+|..+|... ..+--..+-|. .||+||.+.+..-|. ++..++|.+
T Consensus 4 ly-ignL~p-----------~~~psdl~svfg~a---k~~~~g~fl~k-------~gyafvd~pdq~wa~kaie~~sgk~ 61 (584)
T KOG2193|consen 4 LY-IGNLSP-----------QVTPSDLESVFGDA---KIPGSGQFLVK-------SGYAFVDCPDQQWANKAIETLSGKV 61 (584)
T ss_pred cc-ccccCC-----------CCChHHHHHHhccc---cCCCCcceeee-------cceeeccCCchhhhhhhHHhhchhh
Confidence 55 899998 69999999999865 11222222232 699999999999994 444556654
Q ss_pred eecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEE-EecCCCCC
Q 024012 147 SVQPDENFGSENKDYGGNNLQNSMVPSDSSEASPTQIKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKI-IMDKISKR 225 (274)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~te~~L~~~F~~fG~i~~v~i-~~d~~~g~ 225 (274)
..+-. ......+ -+.....+++-|.|+|+...++.|..+..+||.++.+.. .+|.++-
T Consensus 62 elqGk------------------r~e~~~s--v~kkqrsrk~Qirnippql~wevld~Ll~qyg~ve~~eqvnt~~eta- 120 (584)
T KOG2193|consen 62 ELQGK------------------RQEVEHS--VPKKQRSRKIQIRNIPPQLQWEVLDSLLAQYGTVENCEQVNTDSETA- 120 (584)
T ss_pred hhcCc------------------eeeccch--hhHHHHhhhhhHhcCCHHHHHHHHHHHHhccCCHhHhhhhccchHHH-
Confidence 31111 1011111 112223667999999999999999999999999998844 3443322
Q ss_pred cceEEEEEeCCHHHHHHHHHHhCCceeCCEEeEEEeec
Q 024012 226 SKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVDVAK 263 (274)
Q Consensus 226 ~rG~aFV~F~s~~~A~~Ai~~l~g~~l~G~~l~V~~a~ 263 (274)
.--|+|.+.+.+..||.+|+|..+....+++.|--
T Consensus 121 ---vvnvty~~~~~~~~ai~kl~g~Q~en~~~k~~YiP 155 (584)
T KOG2193|consen 121 ---VVNVTYSAQQQHRQAIHKLNGPQLENQHLKVGYIP 155 (584)
T ss_pred ---HHHHHHHHHHHHHHHHHhhcchHhhhhhhhcccCc
Confidence 34578999999999999999999999999998843
No 138
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=97.98 E-value=3.9e-05 Score=70.29 Aligned_cols=79 Identities=28% Similarity=0.445 Sum_probs=64.9
Q ss_pred cccEEEEcCCCCCCCH------HHHHHHHhccCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeC-CEE
Q 024012 184 KTKKLFVTGLSFYTSE------KTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIIN-GWM 256 (274)
Q Consensus 184 ~~~~lfV~nLp~~~te------~~L~~~F~~fG~i~~v~i~~d~~~g~~rG~aFV~F~s~~~A~~Ai~~l~g~~l~-G~~ 256 (274)
-...|+|.|+|---.. .-|..+|+++|.|+...++.+..+| .+||.|++|.+..+|+.|++.|||+.|+ .++
T Consensus 57 ~D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~gg-tkG~lf~E~~~~~~A~~aVK~l~G~~ldknHt 135 (698)
T KOG2314|consen 57 FDSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGG-TKGYLFVEYASMRDAKKAVKSLNGKRLDKNHT 135 (698)
T ss_pred cceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccCC-eeeEEEEEecChhhHHHHHHhcccceecccce
Confidence 3678999999863321 2366889999999999999888555 9999999999999999999999999987 677
Q ss_pred eEEEeec
Q 024012 257 IVVDVAK 263 (274)
Q Consensus 257 l~V~~a~ 263 (274)
..|..-+
T Consensus 136 f~v~~f~ 142 (698)
T KOG2314|consen 136 FFVRLFK 142 (698)
T ss_pred EEeehhh
Confidence 7776433
No 139
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=97.91 E-value=1.5e-05 Score=68.90 Aligned_cols=57 Identities=16% Similarity=0.258 Sum_probs=48.9
Q ss_pred CCCCceeeeecCCCcceeEEecCCCCCCCCHHHHHHHHHHHHHhhhCCcccceEEEecCCCCCCeEEeeeCCHHHHHHH
Q 024012 61 SQIGTTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIYHVSWQSNFGFCCELDDECAQEL 139 (274)
Q Consensus 61 ~~~~s~~lf~vgnl~~~~~~~~~p~~~~~t~~~L~~~F~~~l~~~~G~v~~v~i~~~~~g~srgfgFV~f~~~e~a~~a 139 (274)
.+...++|+ ||+|.. .+++.+|+++|.++ |.|..+++... ++.|||+|.+.++|+.|
T Consensus 224 eD~~I~tLy-Ig~l~d-----------~v~e~dIrdhFyqy-----Geirsi~~~~~-----~~CAFv~ftTR~aAE~A 280 (377)
T KOG0153|consen 224 EDTSIKTLY-IGGLND-----------EVLEQDIRDHFYQY-----GEIRSIRILPR-----KGCAFVTFTTREAAEKA 280 (377)
T ss_pred cccceeEEE-eccccc-----------chhHHHHHHHHhhc-----CCeeeEEeecc-----cccceeeehhhHHHHHH
Confidence 445667788 999987 69999999999999 99999998855 78999999999999444
No 140
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.86 E-value=3.9e-05 Score=49.10 Aligned_cols=52 Identities=23% Similarity=0.457 Sum_probs=41.6
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHH
Q 024012 186 KKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAAL 244 (274)
Q Consensus 186 ~~lfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~d~~~g~~rG~aFV~F~s~~~A~~Ai 244 (274)
+.|-|.|.+.+.. +.+..+|++||+|.++.+.. ...+.+|+|.+..+|++|+
T Consensus 2 ~wI~V~Gf~~~~~-~~vl~~F~~fGeI~~~~~~~------~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLA-EEVLEHFASFGEIVDIYVPE------STNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHH-HHHHHHHHhcCCEEEEEcCC------CCcEEEEEECCHHHHHhhC
Confidence 4577889887755 45566999999999998862 2338999999999999985
No 141
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=97.82 E-value=1.3e-06 Score=83.13 Aligned_cols=146 Identities=19% Similarity=0.166 Sum_probs=96.6
Q ss_pred HHHHHHHHHHHhhhCCcccceEEEecC-CCCCCeEEeeeCCHHHHHHHHCCCCc-eeecCCCCCCCCCCCCCCCCCCCCC
Q 024012 93 QMVDRYAQILTKVLGNEKDAQMCIYHV-SWQSNFGFCCELDDECAQELTGVPGV-LSVQPDENFGSENKDYGGNNLQNSM 170 (274)
Q Consensus 93 ~L~~~F~~~l~~~~G~v~~v~i~~~~~-g~srgfgFV~f~~~e~a~~a~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (274)
..+..|... |.|+.+++..... -.+..++++.+....+++.+....|- +..+.......+...
T Consensus 588 ~~~~~~k~~-----~~vekv~~p~~g~k~h~q~~~~~~~s~~~~~esat~pa~~~~a~~~~av~~ad~~~---------- 652 (881)
T KOG0128|consen 588 IQRRQFKGE-----GNVEKVNGPKRGFKAHEQPQQQKVQSKHGSAESATVPAGGALANRSAAVGLADAEE---------- 652 (881)
T ss_pred hhHHHhhcc-----cccccccCccccccccccchhhhhhccccchhhcccccccccCCccccCCCCCchh----------
Confidence 456667756 9999888876322 22334999999999999888765432 111111000000000
Q ss_pred CCCCCCCCCCCCccccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCc
Q 024012 171 VPSDSSEASPTQIKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGK 250 (274)
Q Consensus 171 ~~~~~~~~~~~~~~~~~lfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~d~~~g~~rG~aFV~F~s~~~A~~Ai~~l~g~ 250 (274)
........+.......++||+||+..+.+.+|...|..+|.+..+++.....+++.||+|||.|...+.|.+|+...++.
T Consensus 653 ~~~~~kvs~n~~R~~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d~~ 732 (881)
T KOG0128|consen 653 KEENFKVSPNEIRDLIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFRDSC 732 (881)
T ss_pred hhhccCcCchHHHHHHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhhhhhh
Confidence 00000000111133467999999999999999999999999998887766668899999999999999999999655544
Q ss_pred eeC
Q 024012 251 IIN 253 (274)
Q Consensus 251 ~l~ 253 (274)
.++
T Consensus 733 ~~g 735 (881)
T KOG0128|consen 733 FFG 735 (881)
T ss_pred hhh
Confidence 444
No 142
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=97.81 E-value=3.3e-05 Score=70.67 Aligned_cols=173 Identities=12% Similarity=0.049 Sum_probs=101.4
Q ss_pred CCCCceeeeecCCCcceeEEecCCCCCCCCHHHHHHHHHHHHHhhhCCcccceEEEecCCCCCCeEEeeeCCHHHHHHHH
Q 024012 61 SQIGTTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIYHVSWQSNFGFCCELDDECAQELT 140 (274)
Q Consensus 61 ~~~~s~~lf~vgnl~~~~~~~~~p~~~~~t~~~L~~~F~~~l~~~~G~v~~v~i~~~~~g~srgfgFV~f~~~e~a~~a~ 140 (274)
....+.+|+ |-|||. +|++++|..+|+.+ |+|++|++- -..+|..||+|.|..+|++|+
T Consensus 71 ~~~~~~~L~-v~nl~~-----------~Vsn~~L~~~f~~y-----Geir~ir~t----~~~~~~~~v~FyDvR~A~~Al 129 (549)
T KOG4660|consen 71 KDMNQGTLV-VFNLPR-----------SVSNDTLLRIFGAY-----GEIREIRET----PNKRGIVFVEFYDVRDAERAL 129 (549)
T ss_pred ccCccceEE-EEecCC-----------cCCHHHHHHHHHhh-----cchhhhhcc----cccCceEEEEEeehHhHHHHH
Confidence 345667788 889998 79999999999977 999987643 445899999999999996554
Q ss_pred -CCCCceee-----cCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccEEEEcCCCCCCCHHHHHHHHhccCCeEE
Q 024012 141 -GVPGVLSV-----QPDENFGSENKDYGGNNLQNSMVPSDSSEASPTQIKTKKLFVTGLSFYTSEKTLRAAFEGFGELVE 214 (274)
Q Consensus 141 -~~~g~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~te~~L~~~F~~fG~i~~ 214 (274)
++++.... ++.... ..........-............+.......+|. .|++..+..-++..|+-+|.+..
T Consensus 130 k~l~~~~~~~~~~k~~~~~~--~~~~~~~~~~~~~~~~~p~a~s~pgg~~~~~~~g-~l~P~~s~~~~~~~~~~~~~~~~ 206 (549)
T KOG4660|consen 130 KALNRREIAGKRIKRPGGAR--RAMGLQSGTSFLNHFGSPLANSPPGGWPRGQLFG-MLSPTRSSILLEHISSVDGSSPG 206 (549)
T ss_pred HHHHHHHhhhhhhcCCCccc--ccchhcccchhhhhccchhhcCCCCCCcCCccee-eeccchhhhhhhcchhccCcccc
Confidence 44542111 111100 0000000000000000000011111111233433 39998888777888888887765
Q ss_pred EEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEeEEEeecC
Q 024012 215 VKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVDVAKT 264 (274)
Q Consensus 215 v~i~~d~~~g~~rG~aFV~F~s~~~A~~Ai~~l~g~~l~G~~l~V~~a~~ 264 (274)
+.. +.-+-.-|++|.+..++..+...+ |..+.+......++.+
T Consensus 207 -~~~-----~~~~hq~~~~~~~~~s~a~~~~~~-G~~~s~~~~v~t~S~~ 249 (549)
T KOG4660|consen 207 -RET-----PLLNHQRFVEFADNRSYAFSEPRG-GFLISNSSGVITFSGP 249 (549)
T ss_pred -ccc-----cchhhhhhhhhccccchhhcccCC-ceecCCCCceEEecCC
Confidence 322 211225578888888886666544 7777777767777665
No 143
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=97.79 E-value=8.1e-05 Score=69.79 Aligned_cols=75 Identities=13% Similarity=0.281 Sum_probs=66.2
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhccCCeE-EEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEeEEEe
Q 024012 186 KKLFVTGLSFYTSEKTLRAAFEGFGELV-EVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVDV 261 (274)
Q Consensus 186 ~~lfV~nLp~~~te~~L~~~F~~fG~i~-~v~i~~d~~~g~~rG~aFV~F~s~~~A~~Ai~~l~g~~l~G~~l~V~~ 261 (274)
+.|-+.|+|++++-+||.++|..|-.+- +|.+-++ +.|...|-|-|-|++.++|.+|...|+++.|..++|.|.+
T Consensus 868 ~V~~~~n~Pf~v~l~dI~~FF~dY~~~p~sI~~r~n-d~G~pTGe~mvAfes~~eAr~A~~dl~~~~i~nr~V~l~i 943 (944)
T KOG4307|consen 868 RVLSCNNFPFDVTLEDIVEFFNDYEPDPNSIRIRRN-DDGVPTGECMVAFESQEEARRASMDLDGQKIRNRVVSLRI 943 (944)
T ss_pred eEEEecCCCccccHHHHHHHhcccccCCCceeEeec-CCCCcccceeEeecCHHHHHhhhhccccCcccceeEEEEe
Confidence 4788999999999999999999996654 4544444 4899999999999999999999999999999999999874
No 144
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=97.79 E-value=1.8e-05 Score=68.46 Aligned_cols=80 Identities=25% Similarity=0.434 Sum_probs=69.4
Q ss_pred ccEEEEcCCCCCCCHHHHHHHHhccC--CeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCE-EeEEEe
Q 024012 185 TKKLFVTGLSFYTSEKTLRAAFEGFG--ELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGW-MIVVDV 261 (274)
Q Consensus 185 ~~~lfV~nLp~~~te~~L~~~F~~fG--~i~~v~i~~d~~~g~~rG~aFV~F~s~~~A~~Ai~~l~g~~l~G~-~l~V~~ 261 (274)
..++||+||-|++|++||.+.....| .+.++++..++.+|+|||||+|...+..+.++-++.|-.++|.|+ ++.+.+
T Consensus 80 k~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V~~~ 159 (498)
T KOG4849|consen 80 KYCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTVLSY 159 (498)
T ss_pred eEEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCeeecc
Confidence 56899999999999999999988776 477889999999999999999999999999999999999999986 445555
Q ss_pred ecC
Q 024012 262 AKT 264 (274)
Q Consensus 262 a~~ 264 (274)
.+.
T Consensus 160 NK~ 162 (498)
T KOG4849|consen 160 NKT 162 (498)
T ss_pred chh
Confidence 543
No 145
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=97.75 E-value=1.6e-05 Score=51.47 Aligned_cols=44 Identities=18% Similarity=0.221 Sum_probs=33.2
Q ss_pred HHHHHHHHHHhhhCCcccceEEEecCCCCCCeEEeeeCCHHHHHHHHC-CCCce
Q 024012 94 MVDRYAQILTKVLGNEKDAQMCIYHVSWQSNFGFCCELDDECAQELTG-VPGVL 146 (274)
Q Consensus 94 L~~~F~~~l~~~~G~v~~v~i~~~~~g~srgfgFV~f~~~e~a~~a~~-~~g~~ 146 (274)
|.++|+++ |+|.++.+.... +|+|||+|.+.++|+.|+. ++|..
T Consensus 1 L~~~f~~f-----G~V~~i~~~~~~----~~~a~V~f~~~~~A~~a~~~l~~~~ 45 (56)
T PF13893_consen 1 LYKLFSKF-----GEVKKIKIFKKK----RGFAFVEFASVEDAQKAIEQLNGRQ 45 (56)
T ss_dssp HHHHHTTT-----S-EEEEEEETTS----TTEEEEEESSHHHHHHHHHHHTTSE
T ss_pred ChHHhCCc-----ccEEEEEEEeCC----CCEEEEEECCHHHHHHHHHHhCCCE
Confidence 56777755 999888887432 7999999999999976664 67653
No 146
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=97.74 E-value=0.00023 Score=51.74 Aligned_cols=78 Identities=22% Similarity=0.314 Sum_probs=53.3
Q ss_pred ccEEEEcCCCCCCCHHHHHHHHhccCCeEEEE-EEecC------CCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCE-E
Q 024012 185 TKKLFVTGLSFYTSEKTLRAAFEGFGELVEVK-IIMDK------ISKRSKGYAFIEYTTEEAASAALKEMNGKIINGW-M 256 (274)
Q Consensus 185 ~~~lfV~nLp~~~te~~L~~~F~~fG~i~~v~-i~~d~------~~g~~rG~aFV~F~s~~~A~~Ai~~l~g~~l~G~-~ 256 (274)
..-|.|-|.|+. ....+.++|++||.|.+.. +.++. .......+-.|+|+++.+|.+|| ..||..++|. .
T Consensus 6 ~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL-~~NG~i~~g~~m 83 (100)
T PF05172_consen 6 ETWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRAL-QKNGTIFSGSLM 83 (100)
T ss_dssp CCEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHH-TTTTEEETTCEE
T ss_pred CeEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHH-HhCCeEEcCcEE
Confidence 556888899988 5677888999999998774 11110 00123459999999999999999 5599999985 5
Q ss_pred eEEEeecC
Q 024012 257 IVVDVAKT 264 (274)
Q Consensus 257 l~V~~a~~ 264 (274)
+-|.++++
T Consensus 84 vGV~~~~~ 91 (100)
T PF05172_consen 84 VGVKPCDP 91 (100)
T ss_dssp EEEEE-HH
T ss_pred EEEEEcHH
Confidence 66888754
No 147
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=97.73 E-value=3.8e-05 Score=72.70 Aligned_cols=56 Identities=13% Similarity=0.212 Sum_probs=50.1
Q ss_pred CCceeeeecCCCcceeEEecCCCCCCCCHHHHHHHHHHHHHhhhCCcccceEEEecCCCCCCeEEeeeCCHHHHHHHH
Q 024012 63 IGTTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIYHVSWQSNFGFCCELDDECAQELT 140 (274)
Q Consensus 63 ~~s~~lf~vgnl~~~~~~~~~p~~~~~t~~~L~~~F~~~l~~~~G~v~~v~i~~~~~g~srgfgFV~f~~~e~a~~a~ 140 (274)
..|+||| ||.++. .+++++|..+|+++ |.|.+|.++.. ||+|||++....+|.+|+
T Consensus 419 V~SrTLw-vG~i~k-----------~v~e~dL~~~feef-----GeiqSi~li~~-----R~cAfI~M~~RqdA~kal 474 (894)
T KOG0132|consen 419 VCSRTLW-VGGIPK-----------NVTEQDLANLFEEF-----GEIQSIILIPP-----RGCAFIKMVRRQDAEKAL 474 (894)
T ss_pred Eeeeeee-eccccc-----------hhhHHHHHHHHHhc-----ccceeEeeccC-----CceeEEEEeehhHHHHHH
Confidence 4688999 999999 69999999999988 99999988744 999999999999996665
No 148
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=97.72 E-value=4.6e-05 Score=69.10 Aligned_cols=60 Identities=17% Similarity=0.192 Sum_probs=51.1
Q ss_pred eeeecCCCcceeEEecCCCCCCCCHHHHHHHHHHHHHhhhCCcccceEEEec-CCCCCCeEEeeeCCHHHHHHHHCCC
Q 024012 67 LLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIYH-VSWQSNFGFCCELDDECAQELTGVP 143 (274)
Q Consensus 67 ~lf~vgnl~~~~~~~~~p~~~~~t~~~L~~~F~~~l~~~~G~v~~v~i~~~~-~g~srgfgFV~f~~~e~a~~a~~~~ 143 (274)
++| |+|||+ ++|.++|.++|.++ |.|+..+|..+. .+.+.+||||+|.+.++++.++..+
T Consensus 290 ~i~-V~nlP~-----------da~~~~l~~~Fk~F-----G~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~As 350 (419)
T KOG0116|consen 290 GIF-VKNLPP-----------DATPAELEEVFKQF-----GPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEAS 350 (419)
T ss_pred ceE-eecCCC-----------CCCHHHHHHHHhhc-----ccccccceEEeccCCCcCceEEEEEeecchhhhhhhcC
Confidence 388 999999 79999999999977 999999988865 4445599999999999997776653
No 149
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=97.71 E-value=6.3e-05 Score=62.52 Aligned_cols=65 Identities=12% Similarity=0.181 Sum_probs=51.7
Q ss_pred CceeeeecCCCcceeEEecCCCCCCCCHHHHHHHHHHHHHhhhCCcccceEEE-ecCCCCCCeEEeeeCCHHHH-HHHHC
Q 024012 64 GTTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCI-YHVSWQSNFGFCCELDDECA-QELTG 141 (274)
Q Consensus 64 ~s~~lf~vgnl~~~~~~~~~p~~~~~t~~~L~~~F~~~l~~~~G~v~~v~i~~-~~~g~srgfgFV~f~~~e~a-~~a~~ 141 (274)
..-.+| -|+|-- +++++-|...|.++ -.-...++++ ..+|+++|||||.|.+++++ .|+.+
T Consensus 189 ~DfRIf-cgdlgN-----------evnd~vl~raf~Kf-----psf~~akviRdkRTgKSkgygfVSf~~pad~~rAmre 251 (290)
T KOG0226|consen 189 DDFRIF-CGDLGN-----------EVNDDVLARAFKKF-----PSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMRE 251 (290)
T ss_pred ccceee-cccccc-----------cccHHHHHHHHHhc-----cchhhccccccccccccccceeeeecCHHHHHHHHHh
Confidence 344588 788887 79999999999977 4444455555 67999999999999999999 66677
Q ss_pred CCCc
Q 024012 142 VPGV 145 (274)
Q Consensus 142 ~~g~ 145 (274)
|+|.
T Consensus 252 m~gk 255 (290)
T KOG0226|consen 252 MNGK 255 (290)
T ss_pred hccc
Confidence 8874
No 150
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=97.70 E-value=2.3e-05 Score=65.09 Aligned_cols=73 Identities=19% Similarity=0.290 Sum_probs=62.9
Q ss_pred cccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCC--------CCcce----EEEEEeCCHHHHHHHHHHhCCce
Q 024012 184 KTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKIS--------KRSKG----YAFIEYTTEEAASAALKEMNGKI 251 (274)
Q Consensus 184 ~~~~lfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~d~~~--------g~~rG----~aFV~F~s~~~A~~Ai~~l~g~~ 251 (274)
....||+++||+.++..-|+++|+.||+|=.|.+.+...+ |.+++ -|.|+|.+...|.+....|||..
T Consensus 73 k~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~ 152 (278)
T KOG3152|consen 73 KTGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTP 152 (278)
T ss_pred cceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCc
Confidence 4678999999999999999999999999999998877544 23222 26899999999999999999999
Q ss_pred eCCEE
Q 024012 252 INGWM 256 (274)
Q Consensus 252 l~G~~ 256 (274)
|+|++
T Consensus 153 Iggkk 157 (278)
T KOG3152|consen 153 IGGKK 157 (278)
T ss_pred cCCCC
Confidence 99975
No 151
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=97.69 E-value=5.3e-06 Score=72.65 Aligned_cols=178 Identities=13% Similarity=0.099 Sum_probs=110.5
Q ss_pred eeecCCCcceeEEecCCCCCCCCHHHHHHHHHHHHHhhhCCcccceEEE--e--cCCCCCCeEEeeeCCHHHHHHHHCCC
Q 024012 68 LFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCI--Y--HVSWQSNFGFCCELDDECAQELTGVP 143 (274)
Q Consensus 68 lf~vgnl~~~~~~~~~p~~~~~t~~~L~~~F~~~l~~~~G~v~~v~i~~--~--~~g~srgfgFV~f~~~e~a~~a~~~~ 143 (274)
++.|.|+.. .+|.++|..+|+-+ |+|.+++++- + ......-.|||.|.|..++..|.-|-
T Consensus 9 vIqvanisp-----------sat~dqm~tlFg~l-----GkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQhLt 72 (479)
T KOG4676|consen 9 VIQVANISP-----------SATKDQMQTLFGNL-----GKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQHLT 72 (479)
T ss_pred eeeecccCc-----------hhhHHHHHHHHhhc-----cccccccccCCCCCccCcceeeeEEEeccCCcceeHHhhhc
Confidence 555888888 69999999999966 9999999774 1 11234579999999999886666553
Q ss_pred Cc------eeecCCCCCCCCCC--------------CCCCCCC--------CCCCCCCCCCCCC---------CCCcccc
Q 024012 144 GV------LSVQPDENFGSENK--------------DYGGNNL--------QNSMVPSDSSEAS---------PTQIKTK 186 (274)
Q Consensus 144 g~------~~~~~~~~~~~~~~--------------~~~~~~~--------~~~~~~~~~~~~~---------~~~~~~~ 186 (274)
.. +.+.+......... ......+ .....+...-..+ .-..-.+
T Consensus 73 ntvfvdraliv~p~~~~~~p~r~af~~l~~~navprll~pdg~Lp~~~~lt~~nh~p~ailktP~Lp~~~~A~kleeirR 152 (479)
T KOG4676|consen 73 NTVFVDRALIVRPYGDEVIPDRFAFVELADQNAVPRLLPPDGVLPGDRPLTKINHSPNAILKTPELPPQAAAKKLEEIRR 152 (479)
T ss_pred cceeeeeeEEEEecCCCCCccHHHHHhcCcccccccccCCCCccCCCCccccccCCccceecCCCCChHhhhhhhHHHHh
Confidence 21 22222111110000 0000000 0000000000000 0011236
Q ss_pred EEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEeEEEeecCCC
Q 024012 187 KLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVDVAKTTP 266 (274)
Q Consensus 187 ~lfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~d~~~g~~rG~aFV~F~s~~~A~~Ai~~l~g~~l~G~~l~V~~a~~~~ 266 (274)
+++|.+|+..+...++.+.|..+|+|....+. .|...-+|-|+|........|+ .++|..+.-+...+..-+|..
T Consensus 153 t~~v~sl~~~~~l~e~~e~f~r~Gev~ya~~a----sk~~s~~c~~sf~~qts~~hal-r~~gre~k~qhsr~ai~kP~k 227 (479)
T KOG4676|consen 153 TREVQSLISAAILPESGESFERKGEVSYAHTA----SKSRSSSCSHSFRKQTSSKHAL-RSHGRERKRQHSRRAIIKPHK 227 (479)
T ss_pred hhhhhcchhhhcchhhhhhhhhcchhhhhhhh----ccCCCcchhhhHhhhhhHHHHH-HhcchhhhhhhhhhhhcCccc
Confidence 89999999999999999999999999877765 3334457889999999999999 567877764444444444443
No 152
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=97.58 E-value=6.1e-05 Score=63.31 Aligned_cols=68 Identities=12% Similarity=0.147 Sum_probs=58.4
Q ss_pred CCCceeeeecCCCcceeEEecCCCCCCCCHHHHHHHHHHHHHhhhCCcccceEEEe-cCCCCCCeEEeeeCCHHHHHHHH
Q 024012 62 QIGTTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIY-HVSWQSNFGFCCELDDECAQELT 140 (274)
Q Consensus 62 ~~~s~~lf~vgnl~~~~~~~~~p~~~~~t~~~L~~~F~~~l~~~~G~v~~v~i~~~-~~g~srgfgFV~f~~~e~a~~a~ 140 (274)
....+.+| +||+.++ +|.+++...|.-| |.+..+.|..+ ..|+++|||||+|.+.+.++.++
T Consensus 98 ~~d~~sv~-v~nvd~~-----------~t~~~~e~hf~~C-----g~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay 160 (231)
T KOG4209|consen 98 EVDAPSVW-VGNVDFL-----------VTLTKIELHFESC-----GGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAY 160 (231)
T ss_pred ccCCceEE-Eeccccc-----------cccchhhheeecc-----CCccceeeeccccCCCcceeEEEecccHhhhHHHh
Confidence 34566788 9999996 8888899999999 99988887774 45679999999999999999999
Q ss_pred CCCCce
Q 024012 141 GVPGVL 146 (274)
Q Consensus 141 ~~~g~~ 146 (274)
.|+|..
T Consensus 161 ~l~gs~ 166 (231)
T KOG4209|consen 161 KLDGSE 166 (231)
T ss_pred hcCCcc
Confidence 998864
No 153
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=97.42 E-value=0.00029 Score=59.29 Aligned_cols=67 Identities=13% Similarity=0.078 Sum_probs=56.1
Q ss_pred CCCceeeeecCCCcceeEEecCCCCCCCCHHHHHHHHHHHHHhhhCCcccceEEEecCCCCCCeEEeeeCCHHHH-HHHH
Q 024012 62 QIGTTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIYHVSWQSNFGFCCELDDECA-QELT 140 (274)
Q Consensus 62 ~~~s~~lf~vgnl~~~~~~~~~p~~~~~t~~~L~~~F~~~l~~~~G~v~~v~i~~~~~g~srgfgFV~f~~~e~a-~~a~ 140 (274)
.+.+..+. |.|||+ .|++++|+++|.++ |.++-+-+..+..|.+.|.|=|.|...++| .++.
T Consensus 80 ~~~~~~v~-v~NL~~-----------~V~~~Dl~eLF~~~-----~~~~r~~vhy~~~G~s~Gta~v~~~r~~DA~~avk 142 (243)
T KOG0533|consen 80 ETRSTKVN-VSNLPY-----------GVIDADLKELFAEF-----GELKRVAVHYDRAGRSLGTADVSFNRRDDAERAVK 142 (243)
T ss_pred CCCcceee-eecCCc-----------CcchHHHHHHHHHh-----ccceEEeeccCCCCCCCccceeeecchHhHHHHHH
Confidence 34455677 899999 79999999999988 888877788899999999999999999999 4445
Q ss_pred CCCCc
Q 024012 141 GVPGV 145 (274)
Q Consensus 141 ~~~g~ 145 (274)
.++|+
T Consensus 143 ~~~gv 147 (243)
T KOG0533|consen 143 KYNGV 147 (243)
T ss_pred HhcCc
Confidence 56764
No 154
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=97.38 E-value=0.00079 Score=51.92 Aligned_cols=57 Identities=25% Similarity=0.476 Sum_probs=46.8
Q ss_pred HHHHHHHhccCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEeEEEeecCC
Q 024012 200 KTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVDVAKTT 265 (274)
Q Consensus 200 ~~L~~~F~~fG~i~~v~i~~d~~~g~~rG~aFV~F~s~~~A~~Ai~~l~g~~l~G~~l~V~~a~~~ 265 (274)
.+|.+.|++||++.-+++.-+ .-+|+|.+-++|-+|+ .|+|.+++|+.|+|....+.
T Consensus 51 ~~ll~~~~~~GevvLvRfv~~--------~mwVTF~dg~sALaal-s~dg~~v~g~~l~i~LKtpd 107 (146)
T PF08952_consen 51 DELLQKFAQYGEVVLVRFVGD--------TMWVTFRDGQSALAAL-SLDGIQVNGRTLKIRLKTPD 107 (146)
T ss_dssp HHHHHHHHCCS-ECEEEEETT--------CEEEEESSCHHHHHHH-HGCCSEETTEEEEEEE----
T ss_pred HHHHHHHHhCCceEEEEEeCC--------eEEEEECccHHHHHHH-ccCCcEECCEEEEEEeCCcc
Confidence 367788999999998888754 4799999999999999 88999999999999988775
No 155
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=97.34 E-value=8.6e-05 Score=61.89 Aligned_cols=63 Identities=24% Similarity=0.467 Sum_probs=51.7
Q ss_pred HHHHHHHh-ccCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEeEEEeec
Q 024012 200 KTLRAAFE-GFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVDVAK 263 (274)
Q Consensus 200 ~~L~~~F~-~fG~i~~v~i~~d~~~g~~rG~aFV~F~s~~~A~~Ai~~l~g~~l~G~~l~V~~a~ 263 (274)
+++...|+ +||+|+++.|..+. .-.-+|-.+|.|...++|++|++.|||..++|++|...+.-
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~Nl-~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~p 146 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDNL-GDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELSP 146 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhccc-chhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeecC
Confidence 34444455 89999999777654 33457899999999999999999999999999999988754
No 156
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=97.33 E-value=0.00078 Score=57.25 Aligned_cols=65 Identities=20% Similarity=0.314 Sum_probs=52.5
Q ss_pred HHHHHHHHhccCCeEEEEEEecCCCCCcc-eEEEEEeCCHHHHHHHHHHhCCceeCCEEeEEEeec
Q 024012 199 EKTLRAAFEGFGELVEVKIIMDKISKRSK-GYAFIEYTTEEAASAALKEMNGKIINGWMIVVDVAK 263 (274)
Q Consensus 199 e~~L~~~F~~fG~i~~v~i~~d~~~g~~r-G~aFV~F~s~~~A~~Ai~~l~g~~l~G~~l~V~~a~ 263 (274)
++++++.+++||.|..|.|..++.--... ---||+|...++|.+|+-.|||+.|+||.+...|-.
T Consensus 300 ede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~Fyn 365 (378)
T KOG1996|consen 300 EDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACFYN 365 (378)
T ss_pred HHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeeheecc
Confidence 46788899999999999888775221111 236999999999999999999999999999877643
No 157
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=97.29 E-value=0.00028 Score=62.80 Aligned_cols=69 Identities=23% Similarity=0.347 Sum_probs=57.8
Q ss_pred CccccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEec---CCCCC----------cceEEEEEeCCHHHHHHHHHHhC
Q 024012 182 QIKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMD---KISKR----------SKGYAFIEYTTEEAASAALKEMN 248 (274)
Q Consensus 182 ~~~~~~lfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~d---~~~g~----------~rG~aFV~F~s~~~A~~Ai~~l~ 248 (274)
..+.++|.+-|||.+-.-+.|.++|+.+|.|..|+|... +.+++ .+-+|+|+|...+.|.+|.+.|+
T Consensus 228 el~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~~ 307 (484)
T KOG1855|consen 228 ELPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELLN 307 (484)
T ss_pred ccccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhhc
Confidence 356899999999999999999999999999999999876 32221 14579999999999999997775
Q ss_pred Cc
Q 024012 249 GK 250 (274)
Q Consensus 249 g~ 250 (274)
..
T Consensus 308 ~e 309 (484)
T KOG1855|consen 308 PE 309 (484)
T ss_pred hh
Confidence 43
No 158
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=97.24 E-value=0.0022 Score=44.47 Aligned_cols=55 Identities=18% Similarity=0.308 Sum_probs=43.3
Q ss_pred ccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhC
Q 024012 185 TKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMN 248 (274)
Q Consensus 185 ~~~lfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~d~~~g~~rG~aFV~F~s~~~A~~Ai~~l~ 248 (274)
.+..+|+ .|..+...||.++|++||.| .|..+-|. -|||...+.+.|..|+..+.
T Consensus 9 dHVFhlt-FPkeWK~~DI~qlFspfG~I-~VsWi~dT-------SAfV~l~~r~~~~~v~~~~~ 63 (87)
T PF08675_consen 9 DHVFHLT-FPKEWKTSDIYQLFSPFGQI-YVSWINDT-------SAFVALHNRDQAKVVMNTLK 63 (87)
T ss_dssp CCEEEEE---TT--HHHHHHHCCCCCCE-EEEEECTT-------EEEEEECCCHHHHHHHHHHT
T ss_pred ceEEEEe-CchHhhhhhHHHHhccCCcE-EEEEEcCC-------cEEEEeecHHHHHHHHHHhc
Confidence 5566666 99999999999999999997 57777664 79999999999999998875
No 159
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=97.14 E-value=0.0051 Score=47.00 Aligned_cols=77 Identities=14% Similarity=0.168 Sum_probs=57.2
Q ss_pred CCCCccccEEEEcCCCCCC----CHHHHHHHHhccCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCC
Q 024012 179 SPTQIKTKKLFVTGLSFYT----SEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIING 254 (274)
Q Consensus 179 ~~~~~~~~~lfV~nLp~~~----te~~L~~~F~~fG~i~~v~i~~d~~~g~~rG~aFV~F~s~~~A~~Ai~~l~g~~l~G 254 (274)
....++-.+|.|+=|..++ +-..+....+.||+|.+|... +|.-|.|.|.+..+|.+|+.+++. ..-|
T Consensus 80 ~~kepPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~c-------GrqsavVvF~d~~SAC~Av~Af~s-~~pg 151 (166)
T PF15023_consen 80 NTKEPPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLC-------GRQSAVVVFKDITSACKAVSAFQS-RAPG 151 (166)
T ss_pred cCCCCCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeec-------CCceEEEEehhhHHHHHHHHhhcC-CCCC
Confidence 3445556788887665554 233455567899999999664 244799999999999999999876 5668
Q ss_pred EEeEEEeec
Q 024012 255 WMIVVDVAK 263 (274)
Q Consensus 255 ~~l~V~~a~ 263 (274)
..++++|-.
T Consensus 152 tm~qCsWqq 160 (166)
T PF15023_consen 152 TMFQCSWQQ 160 (166)
T ss_pred ceEEeeccc
Confidence 888888854
No 160
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=97.10 E-value=0.0018 Score=46.71 Aligned_cols=66 Identities=11% Similarity=0.064 Sum_probs=48.2
Q ss_pred eeeeecCCCcceeEEecCCCCCCCCHHHHHHHHHHHHHhhhCCcccceEEEe-cCCCCCCeEEeeeCCHHHHHHHHC-CC
Q 024012 66 TLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIY-HVSWQSNFGFCCELDDECAQELTG-VP 143 (274)
Q Consensus 66 ~~lf~vgnl~~~~~~~~~p~~~~~t~~~L~~~F~~~l~~~~G~v~~v~i~~~-~~g~srgfgFV~f~~~e~a~~a~~-~~ 143 (274)
+||- +.|+|- ..|.+.|.+.+.+. ..|...=+-+..+ .++.+.|||||.|.+++.|.+..+ .+
T Consensus 2 TTvM-irNIPn-----------~~t~~~L~~~l~~~---~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~ 66 (97)
T PF04059_consen 2 TTVM-IRNIPN-----------KYTQEMLIQILDEH---FKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFN 66 (97)
T ss_pred eeEE-EecCCC-----------CCCHHHHHHHHHHh---ccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHc
Confidence 4566 899998 69999999999876 3355443445554 467789999999999999955543 35
Q ss_pred Cce
Q 024012 144 GVL 146 (274)
Q Consensus 144 g~~ 146 (274)
|..
T Consensus 67 g~~ 69 (97)
T PF04059_consen 67 GKK 69 (97)
T ss_pred CCc
Confidence 543
No 161
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=96.87 E-value=0.0014 Score=60.65 Aligned_cols=81 Identities=19% Similarity=0.240 Sum_probs=66.5
Q ss_pred CCCCccccEEEEcCCCCCCCHHHHHHHHhc-cCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcee---CC
Q 024012 179 SPTQIKTKKLFVTGLSFYTSEKTLRAAFEG-FGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKII---NG 254 (274)
Q Consensus 179 ~~~~~~~~~lfV~nLp~~~te~~L~~~F~~-fG~i~~v~i~~d~~~g~~rG~aFV~F~s~~~A~~Ai~~l~g~~l---~G 254 (274)
+.....++.|+|.||-.-.|.-+|+.++.. .|.|++. .+|+ -|..|||.|.+.++|.+-+.+|||..+ ++
T Consensus 438 PsR~~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~--WmDk----IKShCyV~yss~eEA~atr~AlhnV~WP~sNP 511 (718)
T KOG2416|consen 438 PSRKEPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEF--WMDK----IKSHCYVSYSSVEEAAATREALHNVQWPPSNP 511 (718)
T ss_pred CCCCCccceEeeecccccchHHHHHHHHhhccCchHHH--HHHH----hhcceeEecccHHHHHHHHHHHhccccCCCCC
Confidence 334556889999999999999999999985 5556665 5564 355899999999999999999999886 57
Q ss_pred EEeEEEeecCC
Q 024012 255 WMIVVDVAKTT 265 (274)
Q Consensus 255 ~~l~V~~a~~~ 265 (274)
+.|.++|+...
T Consensus 512 K~L~adf~~~d 522 (718)
T KOG2416|consen 512 KHLIADFVRAD 522 (718)
T ss_pred ceeEeeecchh
Confidence 89999998753
No 162
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=96.87 E-value=0.0066 Score=39.87 Aligned_cols=55 Identities=20% Similarity=0.336 Sum_probs=46.2
Q ss_pred ccEEEEcCCCCCCCHHHHHHHHhcc---CCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHh
Q 024012 185 TKKLFVTGLSFYTSEKTLRAAFEGF---GELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEM 247 (274)
Q Consensus 185 ~~~lfV~nLp~~~te~~L~~~F~~f---G~i~~v~i~~d~~~g~~rG~aFV~F~s~~~A~~Ai~~l 247 (274)
..+|+|.|+. +++.++|+.+|..| .....|..+-|. -|-|.|.+.+.|.+||.+|
T Consensus 5 peavhirGvd-~lsT~dI~~y~~~y~~~~~~~~IEWIdDt-------ScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 5 PEAVHIRGVD-ELSTDDIKAYFSEYFDEEGPFRIEWIDDT-------SCNVVFKDEETAARALVAL 62 (62)
T ss_pred eceEEEEcCC-CCCHHHHHHHHHHhcccCCCceEEEecCC-------cEEEEECCHHHHHHHHHcC
Confidence 4579999984 58889999999998 235688888875 6999999999999999765
No 163
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=96.87 E-value=0.003 Score=40.31 Aligned_cols=53 Identities=13% Similarity=0.189 Sum_probs=40.3
Q ss_pred cceeEEecCCCCCCCCHHHHHHHHHHHHHhhhCCcccceEEEecCCCCCCeEEeeeCCHHHHHHHH
Q 024012 75 KHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIYHVSWQSNFGFCCELDDECAQELT 140 (274)
Q Consensus 75 ~~~~~~~~~p~~~~~t~~~L~~~F~~~l~~~~G~v~~v~i~~~~~g~srgfgFV~f~~~e~a~~a~ 140 (274)
|.|+.|-+.|.. ..+.+..+|.++ |+|.++.+. ....+.+|+|.+..+|++|+
T Consensus 1 ~~wI~V~Gf~~~---~~~~vl~~F~~f-----GeI~~~~~~-----~~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 1 STWISVSGFPPD---LAEEVLEHFASF-----GEIVDIYVP-----ESTNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred CcEEEEEeECch---HHHHHHHHHHhc-----CCEEEEEcC-----CCCcEEEEEECCHHHHHhhC
Confidence 346677777754 456788899988 999765544 45789999999999998774
No 164
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=96.85 E-value=0.0037 Score=57.82 Aligned_cols=63 Identities=10% Similarity=0.112 Sum_probs=51.4
Q ss_pred CCCceeeeecCCCcceeEEecCCCCCCCCHHHHHHHHHHHHHhhhCCcccceEEEe-cCCCCCCeEEeeeCCHHHHHHHH
Q 024012 62 QIGTTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIY-HVSWQSNFGFCCELDDECAQELT 140 (274)
Q Consensus 62 ~~~s~~lf~vgnl~~~~~~~~~p~~~~~t~~~L~~~F~~~l~~~~G~v~~v~i~~~-~~g~srgfgFV~f~~~e~a~~a~ 140 (274)
.+-++.|| |..|.. .+--.+|+.+|.++ |+|+-++|... .+...|.||||++.+.++|.+.+
T Consensus 402 s~~gRNlW-VSGLSs-----------tTRAtDLKnlFSKy-----GKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI 464 (940)
T KOG4661|consen 402 STLGRNLW-VSGLSS-----------TTRATDLKNLFSKY-----GKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCI 464 (940)
T ss_pred ccccccee-eecccc-----------chhhhHHHHHHHHh-----cceeceeeeecCCCCCcceeEEEEecchHHHHHHH
Confidence 45567899 888988 57778999999988 99999998874 34457899999999999996554
Q ss_pred C
Q 024012 141 G 141 (274)
Q Consensus 141 ~ 141 (274)
.
T Consensus 465 ~ 465 (940)
T KOG4661|consen 465 E 465 (940)
T ss_pred H
Confidence 3
No 165
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=96.80 E-value=0.00082 Score=59.84 Aligned_cols=78 Identities=22% Similarity=0.353 Sum_probs=61.3
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCce-eCCEEeEEEeecC
Q 024012 186 KKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKI-INGWMIVVDVAKT 264 (274)
Q Consensus 186 ~~lfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~d~~~g~~rG~aFV~F~s~~~A~~Ai~~l~g~~-l~G~~l~V~~a~~ 264 (274)
.++|++||.+.++..+|..+|...---.+-.++. ..|||||.+.+..-|.+|++.++|.. +.|+++.+.++-+
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~fl~------k~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv~ 75 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQFLV------KSGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSVP 75 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCcceee------ecceeeccCCchhhhhhhHHhhchhhhhcCceeeccchhh
Confidence 4689999999999999999997541111122222 24799999999999999999999965 8899999999888
Q ss_pred CCCCC
Q 024012 265 TPKYS 269 (274)
Q Consensus 265 ~~~~~ 269 (274)
++.++
T Consensus 76 kkqrs 80 (584)
T KOG2193|consen 76 KKQRS 80 (584)
T ss_pred HHHHh
Confidence 76443
No 166
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=96.73 E-value=0.0027 Score=60.11 Aligned_cols=73 Identities=15% Similarity=0.241 Sum_probs=58.4
Q ss_pred CCCCCCCCCceeeeecCCCcceeEEecCCCCCCCCHHHHHHHHHHHHHhhhCCcccceEEEecC----CCCCCeEEeeeC
Q 024012 56 SNPWNSQIGTTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIYHV----SWQSNFGFCCEL 131 (274)
Q Consensus 56 ~~~~~~~~~s~~lf~vgnl~~~~~~~~~p~~~~~t~~~L~~~F~~~l~~~~G~v~~v~i~~~~~----g~srgfgFV~f~ 131 (274)
+.+...++.++.|+ +|||++ .++++.|...|+.+ |++..++|+...+ -+.+.+|||-|-
T Consensus 165 gsfDdgDP~TTNly-v~Nlnp-----------sv~E~~ll~tfGrf-----gPlasvKimwpRtEeEk~r~r~cgfvafm 227 (877)
T KOG0151|consen 165 GSFDDGDPQTTNLY-VGNLNP-----------SVDENFLLRTFGRF-----GPLASVKIMWPRTEEEKRRERNCGFVAFM 227 (877)
T ss_pred CcCCCCCCccccee-eecCCc-----------cccHHHHHHHhccc-----Ccccceeeecccchhhhccccccceeeeh
Confidence 44444567788899 999999 79999999999955 9999999887433 335689999999
Q ss_pred CHHHHHHHH-CCCCc
Q 024012 132 DDECAQELT-GVPGV 145 (274)
Q Consensus 132 ~~e~a~~a~-~~~g~ 145 (274)
+..+|++|+ .|+|.
T Consensus 228 nR~D~era~k~lqg~ 242 (877)
T KOG0151|consen 228 NRADAERALKELQGI 242 (877)
T ss_pred hhhhHHHHHHHhcce
Confidence 999997665 46774
No 167
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=96.72 E-value=0.0019 Score=54.02 Aligned_cols=62 Identities=21% Similarity=0.326 Sum_probs=56.6
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhC
Q 024012 186 KKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMN 248 (274)
Q Consensus 186 ~~lfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~d~~~g~~rG~aFV~F~s~~~A~~Ai~~l~ 248 (274)
..|||.||+..++.+.|...|+.||+|+...+..|. .++..|-++|.|...-.|.+|+....
T Consensus 32 a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD~-r~k~t~eg~v~~~~k~~a~~a~rr~~ 93 (275)
T KOG0115|consen 32 AELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVDD-RGKPTREGIVEFAKKPNARKAARRCR 93 (275)
T ss_pred ceEEEEecchhhhhHHHHHhhhhcCccchheeeecc-cccccccchhhhhcchhHHHHHHHhc
Confidence 679999999999999999999999999988788776 67888899999999999999998873
No 168
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=96.63 E-value=0.0027 Score=56.10 Aligned_cols=76 Identities=9% Similarity=0.229 Sum_probs=63.5
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCC---CCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEeEEEee
Q 024012 186 KKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKIS---KRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVDVA 262 (274)
Q Consensus 186 ~~lfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~d~~~---g~~rG~aFV~F~s~~~A~~Ai~~l~g~~l~G~~l~V~~a 262 (274)
..|.|.||.+..|.++++-+|...|.|.+++|+..... ....-.|||.|.+...+..|- .|.++.+-|+.|.|-..
T Consensus 8 ~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQ-hLtntvfvdraliv~p~ 86 (479)
T KOG4676|consen 8 GVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQ-HLTNTVFVDRALIVRPY 86 (479)
T ss_pred ceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHh-hhccceeeeeeEEEEec
Confidence 37999999999999999999999999999999875422 234568999999999988886 88889888887766543
No 169
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=96.49 E-value=0.00086 Score=64.83 Aligned_cols=81 Identities=25% Similarity=0.363 Sum_probs=67.7
Q ss_pred CccccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEeEEEe
Q 024012 182 QIKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVDV 261 (274)
Q Consensus 182 ~~~~~~lfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~d~~~g~~rG~aFV~F~s~~~A~~Ai~~l~g~~l~G~~l~V~~ 261 (274)
...+.+||++||+..+++.+|+..|..+|.|.+|.|-+.+.. ..--||||.|.+...+-.|...+.+..|..-.+++.+
T Consensus 369 ~~atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~~~-~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r~gl 447 (975)
T KOG0112|consen 369 FRATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPHIK-TESAYAFVSLLNTDMTPSAKFEESGPLIGNGTHRIGL 447 (975)
T ss_pred hhhhhhhhhcCcccchhhhhhhhhhhhhccccccccccCCCC-cccchhhhhhhccccCcccchhhcCCccccCcccccc
Confidence 445789999999999999999999999999999998877533 3334999999999999999999999988755555555
Q ss_pred ec
Q 024012 262 AK 263 (274)
Q Consensus 262 a~ 263 (274)
..
T Consensus 448 G~ 449 (975)
T KOG0112|consen 448 GQ 449 (975)
T ss_pred cc
Confidence 53
No 170
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=96.41 E-value=0.0057 Score=55.94 Aligned_cols=63 Identities=27% Similarity=0.473 Sum_probs=47.7
Q ss_pred cccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCC---CCCcce---EEEEEeCCHHHHHHHHHHh
Q 024012 184 KTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKI---SKRSKG---YAFIEYTTEEAASAALKEM 247 (274)
Q Consensus 184 ~~~~lfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~d~~---~g~~rG---~aFV~F~s~~~A~~Ai~~l 247 (274)
-.++||||+||++++|+.|...|..||.+. |..+.... .-.++| |+|+.|+++.....-+.+.
T Consensus 258 ~S~KVFvGGlp~dise~~i~~~F~~FGs~~-VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC 326 (520)
T KOG0129|consen 258 YSRKVFVGGLPWDITEAQINASFGQFGSVK-VDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSAC 326 (520)
T ss_pred cccceeecCCCccccHHHHHhhcccccceE-eecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHH
Confidence 367999999999999999999999999864 44442110 112456 9999999988887766554
No 171
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=96.35 E-value=0.0012 Score=57.25 Aligned_cols=81 Identities=19% Similarity=0.370 Sum_probs=65.2
Q ss_pred cccEEEEcCCCCCCCHHHHH---HHHhccCCeEEEEEEecCC----CCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEE
Q 024012 184 KTKKLFVTGLSFYTSEKTLR---AAFEGFGELVEVKIIMDKI----SKRSKGYAFIEYTTEEAASAALKEMNGKIINGWM 256 (274)
Q Consensus 184 ~~~~lfV~nLp~~~te~~L~---~~F~~fG~i~~v~i~~d~~----~g~~rG~aFV~F~s~~~A~~Ai~~l~g~~l~G~~ 256 (274)
...-+||-+|+..+..+.+. +.|.+||.|..|.+..+.. .+..- -++|+|...++|..||...+|..++|+.
T Consensus 76 qknlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~-s~yITy~~~eda~rci~~v~g~~~dg~~ 154 (327)
T KOG2068|consen 76 QKNLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTC-SVYITYEEEEDADRCIDDVDGFVDDGRA 154 (327)
T ss_pred hhhhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCC-cccccccchHhhhhHHHHhhhHHhhhhh
Confidence 35668999999887555443 5799999999998888762 12222 3799999999999999999999999999
Q ss_pred eEEEeecCC
Q 024012 257 IVVDVAKTT 265 (274)
Q Consensus 257 l~V~~a~~~ 265 (274)
++..++.++
T Consensus 155 lka~~gttk 163 (327)
T KOG2068|consen 155 LKASLGTTK 163 (327)
T ss_pred hHHhhCCCc
Confidence 998888775
No 172
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=96.17 E-value=0.083 Score=39.10 Aligned_cols=68 Identities=21% Similarity=0.283 Sum_probs=51.2
Q ss_pred ccEEEEcCCCCCCCHHHHHHHHhcc-CCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCC
Q 024012 185 TKKLFVTGLSFYTSEKTLRAAFEGF-GELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIING 254 (274)
Q Consensus 185 ~~~lfV~nLp~~~te~~L~~~F~~f-G~i~~v~i~~d~~~g~~rG~aFV~F~s~~~A~~Ai~~l~g~~l~G 254 (274)
...+.+...|..++-++|..+.+.+ ..|..++|++|. ..++=.+.++|.+.++|..-...+||+.++.
T Consensus 13 ~~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~--~pnrymVLikF~~~~~Ad~Fy~~fNGk~Fns 81 (110)
T PF07576_consen 13 STLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDG--TPNRYMVLIKFRDQESADEFYEEFNGKPFNS 81 (110)
T ss_pred ceEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCC--CCceEEEEEEECCHHHHHHHHHHhCCCccCC
Confidence 3344444555556667777666666 457899999984 3466688999999999999999999999874
No 173
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=96.09 E-value=0.0052 Score=53.53 Aligned_cols=62 Identities=10% Similarity=0.102 Sum_probs=45.9
Q ss_pred eeeecCCCcceeEEecCCCCCCCCHHHHHHHHHHHHHhhhCCcccceEEE-ecCCCCCCeEEeeeCCHHHHHHHHCC
Q 024012 67 LLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCI-YHVSWQSNFGFCCELDDECAQELTGV 142 (274)
Q Consensus 67 ~lf~vgnl~~~~~~~~~p~~~~~t~~~L~~~F~~~l~~~~G~v~~v~i~~-~~~g~srgfgFV~f~~~e~a~~a~~~ 142 (274)
...+||||-+| +|+++|.+..... .+..+.+++..- +..|+|||||.|..-+..+.++.+++
T Consensus 81 ~~~YvGNL~W~-----------TTD~DL~~A~~S~---G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~Mei 143 (498)
T KOG4849|consen 81 YCCYVGNLLWY-----------TTDADLLKALQST---GLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEI 143 (498)
T ss_pred EEEEecceeEE-----------eccHHHHHHHHhh---hHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHh
Confidence 33449999999 9999999987754 223455556443 67899999999999988887666543
No 174
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=96.02 E-value=0.0055 Score=55.44 Aligned_cols=74 Identities=19% Similarity=0.271 Sum_probs=61.1
Q ss_pred ccEEEEcCCCCCC-CHHHHHHHHhccCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEeEEEeec
Q 024012 185 TKKLFVTGLSFYT-SEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVDVAK 263 (274)
Q Consensus 185 ~~~lfV~nLp~~~-te~~L~~~F~~fG~i~~v~i~~d~~~g~~rG~aFV~F~s~~~A~~Ai~~l~g~~l~G~~l~V~~a~ 263 (274)
.+.|-+.-.|+.. +.++|..+|.+||.|..|.+-.. --.|.|+|.+..+|-.|. ..++..|+||.|+|.|-.
T Consensus 372 hs~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~------~~~a~vTF~t~aeag~a~-~s~~avlnnr~iKl~whn 444 (526)
T KOG2135|consen 372 HSPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYS------SLHAVVTFKTRAEAGEAY-ASHGAVLNNRFIKLFWHN 444 (526)
T ss_pred cchhhhhccCCCCchHhhhhhhhhhcCccccccccCc------hhhheeeeeccccccchh-ccccceecCceeEEEEec
Confidence 4455666667766 56899999999999999987644 226999999999998887 679999999999999988
Q ss_pred CC
Q 024012 264 TT 265 (274)
Q Consensus 264 ~~ 265 (274)
+.
T Consensus 445 ps 446 (526)
T KOG2135|consen 445 PS 446 (526)
T ss_pred CC
Confidence 74
No 175
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=95.95 E-value=0.02 Score=46.24 Aligned_cols=81 Identities=16% Similarity=0.183 Sum_probs=52.7
Q ss_pred ccEEEEcCCCCCCCHHHHHHHHhc-cCCe---EEEEEEecC-CCC-CcceEEEEEeCCHHHHHHHHHHhCCceeC---C-
Q 024012 185 TKKLFVTGLSFYTSEKTLRAAFEG-FGEL---VEVKIIMDK-ISK-RSKGYAFIEYTTEEAASAALKEMNGKIIN---G- 254 (274)
Q Consensus 185 ~~~lfV~nLp~~~te~~L~~~F~~-fG~i---~~v~i~~d~-~~g-~~rG~aFV~F~s~~~A~~Ai~~l~g~~l~---G- 254 (274)
..+|.|++||+.+||+++.+.+++ ++.- ..+.-.... ... ..-.-|||.|.+.+++..-...++|+.+. |
T Consensus 7 ~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~kg~ 86 (176)
T PF03467_consen 7 GTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVDSKGN 86 (176)
T ss_dssp --EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-TTS-
T ss_pred CceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEECCCCC
Confidence 568999999999999999998777 6665 333311221 111 12356999999999999999999998874 2
Q ss_pred -EEeEEEeecCC
Q 024012 255 -WMIVVDVAKTT 265 (274)
Q Consensus 255 -~~l~V~~a~~~ 265 (274)
.+-.|++|--+
T Consensus 87 ~~~~~VE~Apyq 98 (176)
T PF03467_consen 87 EYPAVVEFAPYQ 98 (176)
T ss_dssp EEEEEEEE-SS-
T ss_pred CcceeEEEcchh
Confidence 34567777653
No 176
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=95.72 E-value=0.025 Score=52.42 Aligned_cols=60 Identities=13% Similarity=0.116 Sum_probs=43.1
Q ss_pred CCCCCHHHHHHHHHHHHHhhhCCcccceEEEecCCCCCCeEEeeeCCHHHH-HHHHCCCCce
Q 024012 86 VGVVTKAQMVDRYAQILTKVLGNEKDAQMCIYHVSWQSNFGFCCELDDECA-QELTGVPGVL 146 (274)
Q Consensus 86 ~~~~t~~~L~~~F~~~l~~~~G~v~~v~i~~~~~g~srgfgFV~f~~~e~a-~~a~~~~g~~ 146 (274)
++...-+.|+..-.+.+++. |++....+..+..|..+||.|++|++..+| .++..+||..
T Consensus 69 V~~~rl~klk~vl~kvfsk~-gk~vn~~~P~~e~ggtkG~lf~E~~~~~~A~~aVK~l~G~~ 129 (698)
T KOG2314|consen 69 VGPARLEKLKKVLTKVFSKA-GKIVNMYYPIDEEGGTKGYLFVEYASMRDAKKAVKSLNGKR 129 (698)
T ss_pred cChhHHHHHHHHHHHHHHhh-ccccceeeccCccCCeeeEEEEEecChhhHHHHHHhcccce
Confidence 34444555555444444443 888888888788888999999999999999 5556678863
No 177
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=95.63 E-value=0.045 Score=44.40 Aligned_cols=63 Identities=19% Similarity=0.242 Sum_probs=46.9
Q ss_pred CHHHHHHHHhccCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhC--CceeCCEEeEEEeecCCC
Q 024012 198 SEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMN--GKIINGWMIVVDVAKTTP 266 (274)
Q Consensus 198 te~~L~~~F~~fG~i~~v~i~~d~~~g~~rG~aFV~F~s~~~A~~Ai~~l~--g~~l~G~~l~V~~a~~~~ 266 (274)
..+.|+++|..|+.+.....++. =+-..|.|.+.++|.+|...|+ +..+.|..+++-|+++..
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~s------FrRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~~~ 72 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLKS------FRRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQPTP 72 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEETT------TTEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----SS
T ss_pred hHHHHHHHHHhcCCceEEEEcCC------CCEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEccccc
Confidence 45789999999999988877743 3368999999999999999999 999999999999996543
No 178
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=94.70 E-value=0.024 Score=54.96 Aligned_cols=77 Identities=23% Similarity=0.336 Sum_probs=65.0
Q ss_pred EEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeC--CEEeEEEeecC
Q 024012 187 KLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIIN--GWMIVVDVAKT 264 (274)
Q Consensus 187 ~lfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~d~~~g~~rG~aFV~F~s~~~A~~Ai~~l~g~~l~--G~~l~V~~a~~ 264 (274)
+.++.|.+-..+-.-|.-+|++||.|.++..++|- ..|.|+|.+.+.|..|+.+|+|+.+. |-+.+|.+|+.
T Consensus 300 ~~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~~------N~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak~ 373 (1007)
T KOG4574|consen 300 KQSLENNAVNLTSSSLATLCSDYGSVASAWTLRDL------NMALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAKT 373 (1007)
T ss_pred hhhhhcccccchHHHHHHHHHhhcchhhheecccc------cchhhhhHHHHHHHHhhhhhcCCcccccCCceeEEeccc
Confidence 44555666677888899999999999999988874 38999999999999999999999864 88899999998
Q ss_pred CCCCC
Q 024012 265 TPKYS 269 (274)
Q Consensus 265 ~~~~~ 269 (274)
-+-.+
T Consensus 374 ~~~~e 378 (1007)
T KOG4574|consen 374 LPMYE 378 (1007)
T ss_pred ccccc
Confidence 65433
No 179
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=94.66 E-value=0.025 Score=50.78 Aligned_cols=66 Identities=8% Similarity=0.122 Sum_probs=51.4
Q ss_pred CCCCceeeeecCCCcceeEEecCCCCCCCCHHHHHHHHHHHHHhhhCCcccceEEEe---c---CCCC--------CCeE
Q 024012 61 SQIGTTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIY---H---VSWQ--------SNFG 126 (274)
Q Consensus 61 ~~~~s~~lf~vgnl~~~~~~~~~p~~~~~t~~~L~~~F~~~l~~~~G~v~~v~i~~~---~---~g~s--------rgfg 126 (274)
....++++. +.|||- +-.-|.|.++|+.+ |.|+.|+|+.. + .+.. +-.|
T Consensus 227 eel~srtiv-aenLP~-----------Dh~~enl~kiFg~~-----G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~A 289 (484)
T KOG1855|consen 227 EELPSRTIV-AENLPL-----------DHSYENLSKIFGTV-----GSIKSIRICKPGAIPEDVRGFPKKYFELQTKECA 289 (484)
T ss_pred cccccceEE-EecCCc-----------chHHHHHHHHhhcc-----cceeeeeecCCCCCCcccccCCccchhhhhhhhh
Confidence 335678888 899998 56779999999977 99999998864 1 1222 3478
Q ss_pred EeeeCCHHHHHHHHCCC
Q 024012 127 FCCELDDECAQELTGVP 143 (274)
Q Consensus 127 FV~f~~~e~a~~a~~~~ 143 (274)
+|+|...+.|.+|.++.
T Consensus 290 lvEye~~~~A~KA~e~~ 306 (484)
T KOG1855|consen 290 LVEYEEVEAARKARELL 306 (484)
T ss_pred hhhhhhhHHHHHHHHhh
Confidence 99999999998877664
No 180
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=94.56 E-value=0.21 Score=34.12 Aligned_cols=67 Identities=25% Similarity=0.398 Sum_probs=39.4
Q ss_pred EEEEc-CCCCCCCHHHHHHHHhccCC-----eEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEeEEE
Q 024012 187 KLFVT-GLSFYTSEKTLRAAFEGFGE-----LVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVD 260 (274)
Q Consensus 187 ~lfV~-nLp~~~te~~L~~~F~~fG~-----i~~v~i~~d~~~g~~rG~aFV~F~s~~~A~~Ai~~l~g~~l~G~~l~V~ 260 (274)
++||. |--..++..+|..++..-+. |=.|+|..+ |+||+-.. +.|..+++.|++..+.|++|+|+
T Consensus 2 rl~in~Gr~dg~~~~~iv~~i~~~~gi~~~~IG~I~I~~~--------~S~vev~~-~~a~~v~~~l~~~~~~gk~v~ve 72 (74)
T PF03880_consen 2 RLFINVGRKDGLTPRDIVGAICNEAGIPGRDIGRIDIFDN--------FSFVEVPE-EVAEKVLEALNGKKIKGKKVRVE 72 (74)
T ss_dssp EEEES-SGGGT--HHHHHHHHHTCTTB-GGGEEEEEE-SS---------EEEEE-T-T-HHHHHHHHTT--SSS----EE
T ss_pred EEEEEcccccCCCHHHHHHHHHhccCCCHHhEEEEEEeee--------EEEEEECH-HHHHHHHHHhcCCCCCCeeEEEE
Confidence 34542 23346788888888876644 447777644 89999875 48899999999999999999998
Q ss_pred ee
Q 024012 261 VA 262 (274)
Q Consensus 261 ~a 262 (274)
.|
T Consensus 73 ~A 74 (74)
T PF03880_consen 73 RA 74 (74)
T ss_dssp E-
T ss_pred EC
Confidence 75
No 181
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=94.32 E-value=0.099 Score=37.98 Aligned_cols=64 Identities=14% Similarity=0.190 Sum_probs=42.4
Q ss_pred ceeEEecCCCCCCCCHHHHHHHHHHHHHhhhCCcccce-EEE-------ecCCCCCCeEEeeeCCHHHHHHHHCCCCcee
Q 024012 76 HWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQ-MCI-------YHVSWQSNFGFCCELDDECAQELTGVPGVLS 147 (274)
Q Consensus 76 ~~~~~~~~p~~~~~t~~~L~~~F~~~l~~~~G~v~~v~-i~~-------~~~g~srgfgFV~f~~~e~a~~a~~~~g~~~ 147 (274)
.|++|-.+|. .....+.++|+++ |.|.+.. +.. .+......+-.|+|.++.+|++|+..||.+.
T Consensus 7 ~wVtVFGfp~---~~~~~Vl~~F~~~-----G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~~NG~i~ 78 (100)
T PF05172_consen 7 TWVTVFGFPP---SASNQVLRHFSSF-----GTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQKNGTIF 78 (100)
T ss_dssp CEEEEE---G---GGHHHHHHHHHCC-----S-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHTTTTEEE
T ss_pred eEEEEEccCH---HHHHHHHHHHHhc-----ceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHHhCCeEE
Confidence 4566666664 3666888999987 9997664 111 0223456788999999999999999998753
No 182
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=93.80 E-value=0.24 Score=42.70 Aligned_cols=70 Identities=26% Similarity=0.295 Sum_probs=51.7
Q ss_pred EEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEE-eEEEeecC
Q 024012 187 KLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWM-IVVDVAKT 264 (274)
Q Consensus 187 ~lfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~d~~~g~~rG~aFV~F~s~~~A~~Ai~~l~g~~l~G~~-l~V~~a~~ 264 (274)
=|-|-|.|+.- -.-|..+|++||+|++.... ..-.+-+|.|.++-+|.+||. .||+.|+|.. |-|.-+..
T Consensus 199 WVTVfGFppg~-~s~vL~~F~~cG~Vvkhv~~------~ngNwMhirYssr~~A~KALs-kng~ii~g~vmiGVkpCtD 269 (350)
T KOG4285|consen 199 WVTVFGFPPGQ-VSIVLNLFSRCGEVVKHVTP------SNGNWMHIRYSSRTHAQKALS-KNGTIIDGDVMIGVKPCTD 269 (350)
T ss_pred eEEEeccCccc-hhHHHHHHHhhCeeeeeecC------CCCceEEEEecchhHHHHhhh-hcCeeeccceEEeeeecCC
Confidence 35566777753 35677889999999887544 223499999999999999995 5999999864 44655443
No 183
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=93.28 E-value=0.39 Score=43.68 Aligned_cols=68 Identities=19% Similarity=0.391 Sum_probs=59.4
Q ss_pred ccEEEEcCCCCCCCHHHHHHHHhcc-CCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCC
Q 024012 185 TKKLFVTGLSFYTSEKTLRAAFEGF-GELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIING 254 (274)
Q Consensus 185 ~~~lfV~nLp~~~te~~L~~~F~~f-G~i~~v~i~~d~~~g~~rG~aFV~F~s~~~A~~Ai~~l~g~~l~G 254 (274)
++.|+|-.+|..++--||..+...+ -.|.+++|++|.. ..+=...|.|.+.++|..-.+.+||+.|+.
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~--pnrymvLIkFr~q~da~~Fy~efNGk~Fn~ 142 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGM--PNRYMVLIKFRDQADADTFYEEFNGKQFNS 142 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCC--CceEEEEEEeccchhHHHHHHHcCCCcCCC
Confidence 7889999999999999999998876 5689999999752 345468999999999999999999999874
No 184
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=93.08 E-value=0.21 Score=46.42 Aligned_cols=70 Identities=16% Similarity=0.280 Sum_probs=56.3
Q ss_pred ccEEEEcCCCCCCCHHHHHHHHhc--cCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCC--ceeCCEEeEEE
Q 024012 185 TKKLFVTGLSFYTSEKTLRAAFEG--FGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNG--KIINGWMIVVD 260 (274)
Q Consensus 185 ~~~lfV~nLp~~~te~~L~~~F~~--fG~i~~v~i~~d~~~g~~rG~aFV~F~s~~~A~~Ai~~l~g--~~l~G~~l~V~ 260 (274)
.+.|.++-||..+-+|+++.+|+. +-.+.+|.+..+. -=||+|++..+|+.|.+.|.- ++|.|++|...
T Consensus 175 RcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N~-------nWyITfesd~DAQqAykylreevk~fqgKpImAR 247 (684)
T KOG2591|consen 175 RCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHND-------NWYITFESDTDAQQAYKYLREEVKTFQGKPIMAR 247 (684)
T ss_pred eeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecC-------ceEEEeecchhHHHHHHHHHHHHHhhcCcchhhh
Confidence 456778999999999999999974 7778888877653 359999999999999988853 45778776554
Q ss_pred e
Q 024012 261 V 261 (274)
Q Consensus 261 ~ 261 (274)
.
T Consensus 248 I 248 (684)
T KOG2591|consen 248 I 248 (684)
T ss_pred h
Confidence 3
No 185
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=92.56 E-value=0.16 Score=44.78 Aligned_cols=61 Identities=13% Similarity=0.042 Sum_probs=48.4
Q ss_pred ceeeeecCCCcceeEEecCCCCCCCCHHHHHHHHHHHHHhhhCCccc--------ceEEE-ecCCCCCCeEEeeeCCHHH
Q 024012 65 TTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKD--------AQMCI-YHVSWQSNFGFCCELDDEC 135 (274)
Q Consensus 65 s~~lf~vgnl~~~~~~~~~p~~~~~t~~~L~~~F~~~l~~~~G~v~~--------v~i~~-~~~g~srgfgFV~f~~~e~ 135 (274)
-.++| |-+||. .+++.+|.++|.+| |.|+. |.+.+ ..|+..||-|-|.|.|..+
T Consensus 66 ~~ti~-v~g~~d-----------~~~~~~~~~~f~qc-----g~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~ 128 (351)
T KOG1995|consen 66 NETIF-VWGCPD-----------SVCENDNADFFLQC-----GVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPA 128 (351)
T ss_pred cccce-eeccCc-----------cchHHHHHHHHhhc-----ceeccCCCCCCcchhccccccccCcCCceeeeecChhh
Confidence 34578 888888 69999999999999 77722 22222 5789999999999999999
Q ss_pred HHHHHCC
Q 024012 136 AQELTGV 142 (274)
Q Consensus 136 a~~a~~~ 142 (274)
|++|+..
T Consensus 129 akaai~~ 135 (351)
T KOG1995|consen 129 AKAAIEW 135 (351)
T ss_pred hhhhhhh
Confidence 9888753
No 186
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=92.54 E-value=0.06 Score=46.86 Aligned_cols=82 Identities=22% Similarity=0.142 Sum_probs=68.4
Q ss_pred cccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEeEEEeec
Q 024012 184 KTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVDVAK 263 (274)
Q Consensus 184 ~~~~lfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~d~~~g~~rG~aFV~F~s~~~A~~Ai~~l~g~~l~G~~l~V~~a~ 263 (274)
...++|++++.+.+.+.+...++..+|......+........++|++.+.|...+.+..|+.......+.++.+...+..
T Consensus 87 ~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~~~~~~dl~~ 166 (285)
T KOG4210|consen 87 SSSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALEESGSKVLDGNKGEKDLNT 166 (285)
T ss_pred ccccccccccccchhhccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHHhhhccccccccccCcccc
Confidence 46789999999999999999999999998888888777788999999999999999999995544457777776666655
Q ss_pred CC
Q 024012 264 TT 265 (274)
Q Consensus 264 ~~ 265 (274)
..
T Consensus 167 ~~ 168 (285)
T KOG4210|consen 167 RR 168 (285)
T ss_pred cc
Confidence 43
No 187
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=91.66 E-value=1.3 Score=29.58 Aligned_cols=55 Identities=11% Similarity=0.281 Sum_probs=43.7
Q ss_pred CCCHHHHHHHHhccCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEeEE
Q 024012 196 YTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVV 259 (274)
Q Consensus 196 ~~te~~L~~~F~~fG~i~~v~i~~d~~~g~~rG~aFV~F~s~~~A~~Ai~~l~g~~l~G~~l~V 259 (274)
.++-++++..+..|+- . +|..|+ + | =||.|.+..+|+++....+|+.+.+.+|.+
T Consensus 11 ~~~v~d~K~~Lr~y~~-~--~I~~d~-t----G-fYIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYRW-D--RIRDDR-T----G-FYIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred CccHHHHHHHHhcCCc-c--eEEecC-C----E-EEEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 4678999999999963 2 344554 3 3 389999999999999999999998877654
No 188
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=91.28 E-value=0.14 Score=37.53 Aligned_cols=44 Identities=14% Similarity=0.193 Sum_probs=24.9
Q ss_pred CCCHHHHHHHHHHHHHhhhCCcccceEEEecCCCCCCeEEeeeCCHHHHHHHHC
Q 024012 88 VVTKAQMVDRYAQILTKVLGNEKDAQMCIYHVSWQSNFGFCCELDDECAQELTG 141 (274)
Q Consensus 88 ~~t~~~L~~~F~~~l~~~~G~v~~v~i~~~~~g~srgfgFV~f~~~e~a~~a~~ 141 (274)
.++.++|++.|.++ |.|.-|.+. . ...-|+|.|.++++|++|++
T Consensus 12 ~~~re~iK~~f~~~-----g~V~yVD~~---~--G~~~g~VRf~~~~~A~~a~~ 55 (105)
T PF08777_consen 12 PTSREDIKEAFSQF-----GEVAYVDFS---R--GDTEGYVRFKTPEAAQKALE 55 (105)
T ss_dssp S--HHHHHHHT-SS-------EEEEE-----T--T-SEEEEEESS---HHHHHH
T ss_pred CcCHHHHHHHHHhc-----CCcceEEec---C--CCCEEEEEECCcchHHHHHH
Confidence 58899999999966 866433333 2 24489999999999977764
No 189
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.86 E-value=1 Score=42.24 Aligned_cols=79 Identities=27% Similarity=0.339 Sum_probs=62.0
Q ss_pred CccccEEEEcCCCCC-CCHHHHHHHHhcc----CCeEEEEEEecCC----------CCC---------------------
Q 024012 182 QIKTKKLFVTGLSFY-TSEKTLRAAFEGF----GELVEVKIIMDKI----------SKR--------------------- 225 (274)
Q Consensus 182 ~~~~~~lfV~nLp~~-~te~~L~~~F~~f----G~i~~v~i~~d~~----------~g~--------------------- 225 (274)
...+++|-|.||.|. +.-++|..+|+.| |.|.+|.|..... .|.
T Consensus 171 ~~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee~ 250 (650)
T KOG2318|consen 171 GEETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEEE 250 (650)
T ss_pred ccccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhhh
Confidence 456889999999997 6889999999987 6899999875421 122
Q ss_pred ----------------cceEEEEEeCCHHHHHHHHHHhCCceeCCEEeEEE
Q 024012 226 ----------------SKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVD 260 (274)
Q Consensus 226 ----------------~rG~aFV~F~s~~~A~~Ai~~l~g~~l~G~~l~V~ 260 (274)
.-=||.|+|.+++.|.+.....+|..+......++
T Consensus 251 ~~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS~~~~D 301 (650)
T KOG2318|consen 251 EDVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESSANKLD 301 (650)
T ss_pred hhHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceeccccceee
Confidence 01379999999999999999999999985444433
No 190
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=90.41 E-value=0.14 Score=36.21 Aligned_cols=23 Identities=22% Similarity=0.449 Sum_probs=20.0
Q ss_pred ccccEEEEcCCCCCCCHHHHHHH
Q 024012 183 IKTKKLFVTGLSFYTSEKTLRAA 205 (274)
Q Consensus 183 ~~~~~lfV~nLp~~~te~~L~~~ 205 (274)
...++|-|.|||...++++|++.
T Consensus 50 vs~rtVlvsgip~~l~ee~l~D~ 72 (88)
T PF07292_consen 50 VSKRTVLVSGIPDVLDEEELRDK 72 (88)
T ss_pred ccCCEEEEeCCCCCCChhhheee
Confidence 34788999999999999999975
No 191
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=90.33 E-value=0.84 Score=31.90 Aligned_cols=54 Identities=11% Similarity=0.091 Sum_probs=32.7
Q ss_pred cCCCcceeEEecCCCCCCCCHHHHHHHHHHHHHhhhCCcccceEEEecCCCCCCeEEeeeCCHHHHHHHHC-CCC
Q 024012 71 LGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIYHVSWQSNFGFCCELDDECAQELTG-VPG 144 (274)
Q Consensus 71 vgnl~~~~~~~~~p~~~~~t~~~L~~~F~~~l~~~~G~v~~v~i~~~~~g~srgfgFV~f~~~e~a~~a~~-~~g 144 (274)
|-|||. +..-..++.-..+..+.--|+|.+| +.|-|.|.|.+.+.|++|.+ |+|
T Consensus 7 V~NLP~-----------~~d~~~I~~RL~qLsdNCGGkVl~v---------~~~tAilrF~~~~~A~RA~KRmeg 61 (90)
T PF11608_consen 7 VSNLPT-----------NKDPSSIKNRLRQLSDNCGGKVLSV---------SGGTAILRFPNQEFAERAQKRMEG 61 (90)
T ss_dssp EES--T-----------TS-HHHHHHHHHHHHHTTT--EEE-----------TT-EEEEESSHHHHHHHHHHHTT
T ss_pred EecCCC-----------CCCHHHHHHHHHHHhhccCCEEEEE---------eCCEEEEEeCCHHHHHHHHHhhcc
Confidence 777777 4667777776666655555677422 26899999999999976653 444
No 192
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=87.46 E-value=0.72 Score=43.93 Aligned_cols=61 Identities=16% Similarity=0.170 Sum_probs=44.8
Q ss_pred CCCCCCCCCceeeeecCCCcceeEEecCCCCCCCCHHHHHHHHHHHHHhhhCCcccceEEEecCCCCCCeEEeeeCCHHH
Q 024012 56 SNPWNSQIGTTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIYHVSWQSNFGFCCELDDEC 135 (274)
Q Consensus 56 ~~~~~~~~~s~~lf~vgnl~~~~~~~~~p~~~~~t~~~L~~~F~~~l~~~~G~v~~v~i~~~~~g~srgfgFV~f~~~e~ 135 (274)
.....+.+...++| |||+.+ .+..+=++..-..+ |.|...... + |||+.|..+..
T Consensus 31 qp~~~~~~~~~~vf-v~~~~~-----------~~s~~~~~~il~~~-----g~v~s~kr~-------~-fgf~~f~~~~~ 85 (668)
T KOG2253|consen 31 QPVFQPLPPRDTVF-VGNISY-----------LVSQEFWKSILAKS-----GFVPSWKRD-------K-FGFCEFLKHIG 85 (668)
T ss_pred cccccCCCCCceeE-ecchhh-----------hhhHHHHHHHHhhC-----Ccchhhhhh-------h-hcccchhhHHH
Confidence 33444556667789 999999 57887777777777 988655544 1 99999999998
Q ss_pred HHHHHC
Q 024012 136 AQELTG 141 (274)
Q Consensus 136 a~~a~~ 141 (274)
+..+..
T Consensus 86 ~~ra~r 91 (668)
T KOG2253|consen 86 DLRASR 91 (668)
T ss_pred HHHHHH
Confidence 855543
No 193
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=86.24 E-value=1.2 Score=42.39 Aligned_cols=71 Identities=17% Similarity=0.212 Sum_probs=61.2
Q ss_pred CccccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEeEEEe
Q 024012 182 QIKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVDV 261 (274)
Q Consensus 182 ~~~~~~lfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~d~~~g~~rG~aFV~F~s~~~A~~Ai~~l~g~~l~G~~l~V~~ 261 (274)
.++..++||+|+...+..+-++.+...+|-|.+.+.. . |||-.|..+..+..|+..++-..++|..+.+..
T Consensus 37 ~~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~--~-------fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~~~ 107 (668)
T KOG2253|consen 37 LPPRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRD--K-------FGFCEFLKHIGDLRASRLLTELNIDDQKLIENV 107 (668)
T ss_pred CCCCceeEecchhhhhhHHHHHHHHhhCCcchhhhhh--h-------hcccchhhHHHHHHHHHHhcccCCCcchhhccc
Confidence 3457789999999999999999999999998877543 2 999999999999999999999999988876554
No 194
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=82.07 E-value=1.5 Score=37.08 Aligned_cols=56 Identities=9% Similarity=0.054 Sum_probs=48.3
Q ss_pred eeecCCCcceeEEecCCCCCCCCHHHHHHHHHHHHHhhhCCcccceEEEecCCCCCCeEEeeeCCHHHHHHHH
Q 024012 68 LFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIYHVSWQSNFGFCCELDDECAQELT 140 (274)
Q Consensus 68 lf~vgnl~~~~~~~~~p~~~~~t~~~L~~~F~~~l~~~~G~v~~v~i~~~~~g~srgfgFV~f~~~e~a~~a~ 140 (274)
|. |-||+.. ++.+.|.+.|..+ |.|....++.+..++..+=++|.|...-.|.+|+
T Consensus 34 l~-V~nl~~~-----------~sndll~~~f~~f-----g~~e~av~~vD~r~k~t~eg~v~~~~k~~a~~a~ 89 (275)
T KOG0115|consen 34 LY-VVNLMQG-----------ASNDLLEQAFRRF-----GPIERAVAKVDDRGKPTREGIVEFAKKPNARKAA 89 (275)
T ss_pred EE-EEecchh-----------hhhHHHHHhhhhc-----CccchheeeecccccccccchhhhhcchhHHHHH
Confidence 55 7787774 9999999999966 9999999999999999999999999998885554
No 195
>COG5638 Uncharacterized conserved protein [Function unknown]
Probab=79.30 E-value=6.6 Score=35.57 Aligned_cols=149 Identities=12% Similarity=0.156 Sum_probs=82.1
Q ss_pred CCCcceeEEecCCCCCCCCHHHHHHHHHHHHHhhhCCcccceEEEecCCCCCCeEEeeeCCHHHHHHHHCCCCceeecCC
Q 024012 72 GTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIYHVSWQSNFGFCCELDDECAQELTGVPGVLSVQPD 151 (274)
Q Consensus 72 gnl~~~~~~~~~p~~~~~t~~~L~~~F~~~l~~~~G~v~~v~i~~~~~g~srgfgFV~f~~~e~a~~a~~~~g~~~~~~~ 151 (274)
||....|.|.|..|+ .+...+|...|+.++... |++..|.|.....|+.| .++..+.| .|.
T Consensus 143 G~~tkrLAvVnmDWd-~v~a~DLf~~fsSf~P~g-gkl~kV~iypsefGkeR-------------m~~e~vqG----ppr 203 (622)
T COG5638 143 GNPTKRLAVVNMDWD-RVDAKDLFKIFSSFLPYG-GKLSKVKIYPSEFGKER-------------MAAEHVQG----PPR 203 (622)
T ss_pred CCcccceeEeecccc-cchHHHHHHHHHhhCCCC-CccceeEechhhhhHHH-------------HhHhhccC----Cch
Confidence 777788888888888 889999999999886654 66665666544334433 22222222 112
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccEEEEcC-CCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCcceEE
Q 024012 152 ENFGSENKDYGGNNLQNSMVPSDSSEASPTQIKTKKLFVTG-LSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYA 230 (274)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~n-Lp~~~te~~L~~~F~~fG~i~~v~i~~d~~~g~~rG~a 230 (274)
.++....+.... ..............+.-+++-+ +...++--.|++ | ++..++.. ||
T Consensus 204 dif~~~d~~~ss-------qk~~~dn~~sd~d~g~d~~~Egd~g~e~d~~~lrq----y-qlerlryY----------yA 261 (622)
T COG5638 204 DIFTPADNQPSS-------QKFGDDNVFSDRDAGEDALIEGDRGNEFDMVKLRQ----Y-QLERLRYY----------YA 261 (622)
T ss_pred hhccccccCcch-------hccCCccchhhhhcchhhhhhcccccchhHHHHHH----H-HhhhheeE----------EE
Confidence 222111111100 0000000011111123344433 334444444554 3 44555554 99
Q ss_pred EEEeCCHHHHHHHHHHhCCceeCC--EEeEEEe
Q 024012 231 FIEYTTEEAASAALKEMNGKIING--WMIVVDV 261 (274)
Q Consensus 231 FV~F~s~~~A~~Ai~~l~g~~l~G--~~l~V~~ 261 (274)
.|++.+.+.+.......+|..+.. ..+.+.|
T Consensus 262 vvec~d~~tsK~iY~~CDG~Eye~san~~DLRf 294 (622)
T COG5638 262 VVECEDIETSKNIYSACDGVEYENSANVLDLRF 294 (622)
T ss_pred EEEeccchhhHHHHhccCccccccccceeeeee
Confidence 999999999999999999999874 3444444
No 196
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=78.78 E-value=9 Score=33.05 Aligned_cols=48 Identities=15% Similarity=0.160 Sum_probs=36.5
Q ss_pred cccEEEEcCCCCCCCHHHHHHHHhccCCe-EEEEEEecCCCCCcceEEEEEeCCH
Q 024012 184 KTKKLFVTGLSFYTSEKTLRAAFEGFGEL-VEVKIIMDKISKRSKGYAFIEYTTE 237 (274)
Q Consensus 184 ~~~~lfV~nLp~~~te~~L~~~F~~fG~i-~~v~i~~d~~~g~~rG~aFV~F~s~ 237 (274)
...-|+++|||.++.-.||+..+.+-|.+ .++... .++|-||+.|.+.
T Consensus 329 ~~~di~~~nl~rd~rv~dlk~~lr~~~~~pm~iswk------g~~~k~flh~~~~ 377 (396)
T KOG4410|consen 329 AKTDIKLTNLSRDIRVKDLKSELRKRECTPMSISWK------GHFGKCFLHFGNR 377 (396)
T ss_pred cccceeeccCccccchHHHHHHHHhcCCCceeEeee------cCCcceeEecCCc
Confidence 35679999999999999999999887653 233332 3477899999765
No 197
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=73.50 E-value=3.2 Score=33.32 Aligned_cols=76 Identities=14% Similarity=0.135 Sum_probs=55.2
Q ss_pred ccEEEEcCCCCCCCH-----HHHHHHHhccCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCE-EeE
Q 024012 185 TKKLFVTGLSFYTSE-----KTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGW-MIV 258 (274)
Q Consensus 185 ~~~lfV~nLp~~~te-----~~L~~~F~~fG~i~~v~i~~d~~~g~~rG~aFV~F~s~~~A~~Ai~~l~g~~l~G~-~l~ 258 (274)
..++.+.+++..+-. .....+|.+|-+..-.++++ +.+.--|.|.+.+.|..|...++++.|.|+ .++
T Consensus 10 p~~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~lr------sfrrvRi~f~~p~~a~~a~i~~~~~~f~~~~~~k 83 (193)
T KOG4019|consen 10 PTAIIACDIHEEVFVNREDKALFENLFRQINEDATFQLLR------SFRRVRINFSNPEAAADARIKLHSTSFNGKNELK 83 (193)
T ss_pred cceeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHHH------hhceeEEeccChhHHHHHHHHhhhcccCCCceEE
Confidence 445677777776532 23455666666655555553 344667889999999999999999999998 888
Q ss_pred EEeecCCC
Q 024012 259 VDVAKTTP 266 (274)
Q Consensus 259 V~~a~~~~ 266 (274)
.-+|++..
T Consensus 84 ~yfaQ~~~ 91 (193)
T KOG4019|consen 84 LYFAQPGH 91 (193)
T ss_pred EEEccCCC
Confidence 88888754
No 198
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=72.41 E-value=8.9 Score=33.37 Aligned_cols=59 Identities=12% Similarity=0.152 Sum_probs=46.2
Q ss_pred cceeEEecCCCCCCCCHHHHHHHHHHHHHhhhCCcccceEEEecCCCCCCeEEeeeCCHHHHHHHHCCCCce
Q 024012 75 KHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIYHVSWQSNFGFCCELDDECAQELTGVPGVL 146 (274)
Q Consensus 75 ~~~~~~~~~p~~~~~t~~~L~~~F~~~l~~~~G~v~~v~i~~~~~g~srgfgFV~f~~~e~a~~a~~~~g~~ 146 (274)
.+|+-|..+|.. + -.-|..+|.+| |+|.+... +..-.+=+|.|.+.-+|++|+..||.+
T Consensus 197 D~WVTVfGFppg-~--~s~vL~~F~~c-----G~Vvkhv~-----~~ngNwMhirYssr~~A~KALskng~i 255 (350)
T KOG4285|consen 197 DTWVTVFGFPPG-Q--VSIVLNLFSRC-----GEVVKHVT-----PSNGNWMHIRYSSRTHAQKALSKNGTI 255 (350)
T ss_pred cceEEEeccCcc-c--hhHHHHHHHhh-----Ceeeeeec-----CCCCceEEEEecchhHHHHhhhhcCee
Confidence 369999999976 3 33588889999 99954333 344569999999999999999988864
No 199
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=71.95 E-value=5.6 Score=35.08 Aligned_cols=46 Identities=20% Similarity=0.179 Sum_probs=31.1
Q ss_pred HHHHHHHHHhhhCCcccceEEEecCCC--CCC-eE-EeeeCCHHHHH-HHHCCCCc
Q 024012 95 VDRYAQILTKVLGNEKDAQMCIYHVSW--QSN-FG-FCCELDDECAQ-ELTGVPGV 145 (274)
Q Consensus 95 ~~~F~~~l~~~~G~v~~v~i~~~~~g~--srg-fg-FV~f~~~e~a~-~a~~~~g~ 145 (274)
.++|+|+ |.|..|.|-++.... ..+ +| ||+|.+.|+|. .+.+.+|.
T Consensus 138 ~eyFGQy-----GkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs 188 (480)
T COG5175 138 HEYFGQY-----GKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGS 188 (480)
T ss_pred hhhhhhc-----cceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccc
Confidence 4689998 999887766543211 223 43 99999999994 44455664
No 200
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=69.60 E-value=2.7 Score=39.76 Aligned_cols=63 Identities=14% Similarity=0.062 Sum_probs=44.3
Q ss_pred CCceeeeecCCCcceeEEecCCCCCCCCHHHHHHHHHHHHHhhhCCcccceEEEecCCCCCCeEEeeeCCHHHH-HHHHC
Q 024012 63 IGTTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIYHVSWQSNFGFCCELDDECA-QELTG 141 (274)
Q Consensus 63 ~~s~~lf~vgnl~~~~~~~~~p~~~~~t~~~L~~~F~~~l~~~~G~v~~v~i~~~~~g~srgfgFV~f~~~e~a-~~a~~ 141 (274)
..|..|. |.||-. -.|.-+|+.+.+.. -|.|.+..|-.. +.-|||.|.+.++| .-...
T Consensus 442 ~~Snvlh-I~nLvR-----------PFTlgQLkelL~rt----gg~Vee~WmDkI-----KShCyV~yss~eEA~atr~A 500 (718)
T KOG2416|consen 442 EPSNVLH-IDNLVR-----------PFTLGQLKELLGRT----GGNVEEFWMDKI-----KSHCYVSYSSVEEAAATREA 500 (718)
T ss_pred CccceEe-eecccc-----------cchHHHHHHHHhhc----cCchHHHHHHHh-----hcceeEecccHHHHHHHHHH
Confidence 3456677 999876 47999999988732 166666644322 77899999999999 44445
Q ss_pred CCCce
Q 024012 142 VPGVL 146 (274)
Q Consensus 142 ~~g~~ 146 (274)
|+|+.
T Consensus 501 lhnV~ 505 (718)
T KOG2416|consen 501 LHNVQ 505 (718)
T ss_pred Hhccc
Confidence 66653
No 201
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=67.98 E-value=8.1 Score=28.83 Aligned_cols=38 Identities=26% Similarity=0.456 Sum_probs=24.4
Q ss_pred CHHHHHHHHhccCCeEEEEEEecCCCCCcceEEEEEeCCHH
Q 024012 198 SEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEE 238 (274)
Q Consensus 198 te~~L~~~F~~fG~i~~v~i~~d~~~g~~rG~aFV~F~s~~ 238 (274)
+.+.|++.|+.|..++ ++.+.++ ..++|++.|+|.+.-
T Consensus 30 ~~~~l~~~l~~f~p~k-v~~l~~~--~gh~g~aiv~F~~~w 67 (116)
T PF03468_consen 30 SNEELLDKLAEFNPLK-VKPLYGK--QGHTGFAIVEFNKDW 67 (116)
T ss_dssp -SHHHHHHHHH---SE-EEEEEET--TEEEEEEEEE--SSH
T ss_pred CHHHHHHHHHhcCCce-eEECcCC--CCCcEEEEEEECCCh
Confidence 4588999999998874 6666664 357899999997743
No 202
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=67.69 E-value=4.2 Score=34.46 Aligned_cols=43 Identities=12% Similarity=0.054 Sum_probs=32.8
Q ss_pred HHhhhCCcccceEEEecCCCCCCeEEeeeCCHHHHHHHHC-CCC
Q 024012 102 LTKVLGNEKDAQMCIYHVSWQSNFGFCCELDDECAQELTG-VPG 144 (274)
Q Consensus 102 l~~~~G~v~~v~i~~~~~g~srgfgFV~f~~~e~a~~a~~-~~g 144 (274)
+...+|+|.++.|...---.-+|=.+|.|..+|+|++|+. +|+
T Consensus 89 ~~~kygEiee~~Vc~Nl~~hl~GNVYV~f~~Ee~ae~a~~~lnn 132 (260)
T KOG2202|consen 89 LEDKYGEIEELNVCDNLGDHLVGNVYVKFRSEEDAEAALEDLNN 132 (260)
T ss_pred HHHHhhhhhhhhhhcccchhhhhhhhhhcccHHHHHHHHHHHcC
Confidence 4446699999988765445578999999999999977664 455
No 203
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=65.89 E-value=5.8 Score=30.83 Aligned_cols=49 Identities=12% Similarity=0.164 Sum_probs=31.9
Q ss_pred CCHHHHHHHHHHHHHhhhCCcccceEEEecCCCCCCeEEeeeCCHHHHHHHHCCCCc
Q 024012 89 VTKAQMVDRYAQILTKVLGNEKDAQMCIYHVSWQSNFGFCCELDDECAQELTGVPGV 145 (274)
Q Consensus 89 ~t~~~L~~~F~~~l~~~~G~v~~v~i~~~~~g~srgfgFV~f~~~e~a~~a~~~~g~ 145 (274)
...++|..-+-+.+.. +|.+.=+|+. .+-=+|+|.+-++|-+|+.++|.
T Consensus 44 ~Fdd~l~~~ll~~~~~-~GevvLvRfv-------~~~mwVTF~dg~sALaals~dg~ 92 (146)
T PF08952_consen 44 SFDDNLMDELLQKFAQ-YGEVVLVRFV-------GDTMWVTFRDGQSALAALSLDGI 92 (146)
T ss_dssp S--HHHHHHHHHHHHC-CS-ECEEEEE-------TTCEEEEESSCHHHHHHHHGCCS
T ss_pred cCCHHHHHHHHHHHHh-CCceEEEEEe-------CCeEEEEECccHHHHHHHccCCc
Confidence 3455444444443333 3887666555 46778999999999999999885
No 204
>PF05922 Inhibitor_I9: Peptidase inhibitor I9; InterPro: IPR010259 Peptide proteinase inhibitors can be found as single domain proteins or as single or multiple domains within proteins; these are referred to as either simple or compound inhibitors, respectively. In many cases they are synthesised as part of a larger precursor protein, either as a prepropeptide or as an N-terminal domain associated with an inactive peptidase or zymogen. This domain prevents access of the substrate to the active site. Removal of the N-terminal inhibitor domain either by interaction with a second peptidase or by autocatalytic cleavage activates the zymogen. Other inhibitors interact direct with proteinases using a simple noncovalent lock and key mechanism; while yet others use a conformational change-based trapping mechanism that depends on their structural and thermodynamic properties. Limited proteolysis of most large protein precursors is carried out in vivo by the subtilisin-like pro-protein convertases. Many important biological processes such as peptide hormone synthesis, viral protein processing and receptor maturation involve proteolytic processing by these enzymes []. The subtilisin-serine protease (SRSP) family hormone and pro-protein convertases (furin, PC1/3, PC2, PC4, PACE4, PC5/6, and PC7/7/LPC) act within the secretory pathway to cleave polypeptide precursors at specific basic sites, generating their biologically active forms. Serum proteins, pro-hormones, receptors, zymogens, viral surface glycoproteins, bacterial toxins, amongst others, are activated by this route []. The SRSPs share the same domain structure, including a signal peptide, the pro-peptide, the catalytic domain, the P/middle or homo B domain, and the C terminus. Proteinase propeptide inhibitors (sometimes refered to as activation peptides) are responsible for the modulation of folding and activity of the pro-enzyme or zymogen. The pro-segment docks into the enzyme moiety shielding the substrate binding site, thereby promoting inhibition of the enzyme. Several such propeptides share a similar topology [], despite often low sequence identities []. The propeptide region has an open-sandwich antiparallel-alpha/antiparallel-beta fold, with two alpha-helices and four beta-strands with a (beta/alpha/beta)x2 topology. This group of sequences contain the propeptide domain at the N terminus of peptidases belonging to MEROPS family S8A, subtilisins. A number of the members of this group of sequences belong to MEROPS inhibitor family I9, clan I-. The propeptide is removed by proteolytic cleavage; removal activating the enzyme.; GO: 0004252 serine-type endopeptidase activity, 0042802 identical protein binding, 0043086 negative regulation of catalytic activity; PDB: 3CNQ_P 1SPB_P 3CO0_P 1ITP_A 1V5I_B 1SCJ_B 3P5B_P 2XTJ_P 2W2M_P 2P4E_P ....
Probab=62.27 E-value=10 Score=25.68 Aligned_cols=31 Identities=35% Similarity=0.578 Sum_probs=27.1
Q ss_pred CcceeeeecChhhHHHHhcCCceeEeccCCC
Q 024012 10 THFGFCCNVDEETSRELARLPGVLTVRPDPD 40 (274)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 40 (274)
..-||.-+++++...+|...|+|..|.||.-
T Consensus 48 ~~~Gfs~~l~~~~i~~L~~~p~V~~Ve~D~~ 78 (82)
T PF05922_consen 48 AFNGFSAKLSEEEIEKLRKDPGVKSVEPDQV 78 (82)
T ss_dssp TSSEEEEEE-HHHHHHHHTSTTEEEEEEECE
T ss_pred eEEEEEEEeCHHHHHHHHcCCCeEEEEeCce
Confidence 4679999999999999999999999999864
No 205
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=61.91 E-value=18 Score=31.40 Aligned_cols=80 Identities=10% Similarity=0.231 Sum_probs=57.0
Q ss_pred cccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCC-------CCCcceEEEEEeCCHHHHHHH----HHHhCC--c
Q 024012 184 KTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKI-------SKRSKGYAFIEYTTEEAASAA----LKEMNG--K 250 (274)
Q Consensus 184 ~~~~lfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~d~~-------~g~~rG~aFV~F~s~~~A~~A----i~~l~g--~ 250 (274)
.++.|...|+..+++--.+...|-+||+|++|.++.+.. ..+...-..+.|-+.+.+-.- ++.|.- +
T Consensus 14 rTRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrLsEfK~ 93 (309)
T PF10567_consen 14 RTRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRLSEFKT 93 (309)
T ss_pred eeHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHHHHHHH
Confidence 477899999999999999999999999999999998751 112234678999988876432 233322 3
Q ss_pred eeCCEEeEEEeec
Q 024012 251 IINGWMIVVDVAK 263 (274)
Q Consensus 251 ~l~G~~l~V~~a~ 263 (274)
.+....|.+++..
T Consensus 94 ~L~S~~L~lsFV~ 106 (309)
T PF10567_consen 94 KLKSESLTLSFVS 106 (309)
T ss_pred hcCCcceeEEEEE
Confidence 3556666666654
No 206
>KOG4365 consensus Uncharacterized conserved protein [Function unknown]
Probab=60.22 E-value=1.2 Score=40.45 Aligned_cols=80 Identities=5% Similarity=-0.154 Sum_probs=64.0
Q ss_pred ccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEeEEEeecC
Q 024012 185 TKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVDVAKT 264 (274)
Q Consensus 185 ~~~lfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~d~~~g~~rG~aFV~F~s~~~A~~Ai~~l~g~~l~G~~l~V~~a~~ 264 (274)
..+-|+..+|-.++++++.-+|..||-|..+.+-+-...|..+-.+||+-.+ ++|..+|+.+.-..+.|..+++.++..
T Consensus 3 s~~~~l~d~~~~~~~~~~~~~~~d~~~i~~~d~~~~~~~~~~~v~~f~~~~~-~~~~~~i~~~k~q~~~~~~~r~~~~~~ 81 (572)
T KOG4365|consen 3 SMKKSLKDSVASNNKDQNSMKHEDPSIISMEDGSPYVNGSLGEVTPFQHAKK-ANGPNYIQPQKRQTTFESQDRKAVSPS 81 (572)
T ss_pred chhhhHhhcccccccchhhhhccCCcceeeccCCccccCCcceeeeeeeeec-cCcccccCHHHHhhhhhhhhhhhcCch
Confidence 3456788999999999999999999999988877766566777788888764 567788877777777788888888765
Q ss_pred C
Q 024012 265 T 265 (274)
Q Consensus 265 ~ 265 (274)
.
T Consensus 82 s 82 (572)
T KOG4365|consen 82 S 82 (572)
T ss_pred h
Confidence 3
No 207
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=60.00 E-value=39 Score=24.93 Aligned_cols=66 Identities=11% Similarity=-0.001 Sum_probs=41.2
Q ss_pred CceeeeecCCCcceeEEecCCCCCCCCHHHHHHHHHHHHHhhhCCcccceEEEecCCCCCCeEEeeeCCHHHHHHHHC-C
Q 024012 64 GTTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIYHVSWQSNFGFCCELDDECAQELTG-V 142 (274)
Q Consensus 64 ~s~~lf~vgnl~~~~~~~~~p~~~~~t~~~L~~~F~~~l~~~~G~v~~v~i~~~~~g~srgfgFV~f~~~e~a~~a~~-~ 142 (274)
++..+.++...|++ ++-+.|.. |... ....|..++|+++. ..+|=-+.+.|.+.++|.+-.. .
T Consensus 11 ~~~~~~~l~vp~~~-----------~~~d~l~~-f~~~---~~~~i~~~riird~-~pnrymVLikF~~~~~Ad~Fy~~f 74 (110)
T PF07576_consen 11 RRSTLCCLAVPPYM-----------TPSDFLLF-FGAP---FREDIEHIRIIRDG-TPNRYMVLIKFRDQESADEFYEEF 74 (110)
T ss_pred CCceEEEEEeCccc-----------ccHHHHHH-hhhc---ccccEEEEEEeeCC-CCceEEEEEEECCHHHHHHHHHHh
Confidence 34456658888885 56666654 4422 23455566666432 2367778899999999966653 3
Q ss_pred CCc
Q 024012 143 PGV 145 (274)
Q Consensus 143 ~g~ 145 (274)
||.
T Consensus 75 NGk 77 (110)
T PF07576_consen 75 NGK 77 (110)
T ss_pred CCC
Confidence 553
No 208
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=58.34 E-value=29 Score=31.56 Aligned_cols=56 Identities=20% Similarity=0.191 Sum_probs=47.1
Q ss_pred cccEEEEcCCCCCCCHHHHHHHHhccCC-eEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHH
Q 024012 184 KTKKLFVTGLSFYTSEKTLRAAFEGFGE-LVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKE 246 (274)
Q Consensus 184 ~~~~lfV~nLp~~~te~~L~~~F~~fG~-i~~v~i~~d~~~g~~rG~aFV~F~s~~~A~~Ai~~ 246 (274)
-.+.|=|-++|.....+||...|+.|+. --+|+.+-|. .||-.|.+...|..||..
T Consensus 390 lpHVlEIydfp~efkteDll~~f~~yq~kgfdIkWvDdt-------halaVFss~~~AaeaLt~ 446 (528)
T KOG4483|consen 390 LPHVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVDDT-------HALAVFSSVNRAAEALTL 446 (528)
T ss_pred ccceeEeccCchhhccHHHHHHHHHhhcCCceeEEeecc-------eeEEeecchHHHHHHhhc
Confidence 3578899999999999999999999965 3467777665 899999999999999943
No 209
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=53.59 E-value=16 Score=34.50 Aligned_cols=106 Identities=11% Similarity=0.064 Sum_probs=54.9
Q ss_pred eeecChhh---HHHHhcCCceeEeccCCCCCccccCCCcCCCCCCCCCC--CCCCceeeeecCCCcceeEEecCCCCCCC
Q 024012 15 CCNVDEET---SRELARLPGVLTVRPDPDYNSVKKDYSCLDIQMSNPWN--SQIGTTLLFPLGTTKHWLVRMDKPGVGVV 89 (274)
Q Consensus 15 ~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~--~~~~s~~lf~vgnl~~~~~~~~~p~~~~~ 89 (274)
-|++|.|- ...+++++.+....-|-++..|.-.-. .+...+.-.. .+..-+-+..+..+|. ++
T Consensus 120 ~sQMDSDqyVPI~tva~~~~i~klttDvdLI~Evlres-p~VqvDekgekVrp~~kRcIvilREIpe-----------tt 187 (684)
T KOG2591|consen 120 ISQMDSDQYVPINTVANFPEIMKLTTDVDLIVEVLRES-PNVQVDEKGEKVRPNHKRCIVILREIPE-----------TT 187 (684)
T ss_pred hhhcccccccchhhhccchhhhhhccchHHHHHHHhcC-CCceeccCccccccCcceeEEEEeecCC-----------CC
Confidence 36777772 455666666665555444332221111 1111111111 2222333333788888 68
Q ss_pred CHHHHHHHHHHHHHhhhCCcccceEEEecCCCCCCeEEeeeCCHHHHHHHHC
Q 024012 90 TKAQMVDRYAQILTKVLGNEKDAQMCIYHVSWQSNFGFCCELDDECAQELTG 141 (274)
Q Consensus 90 t~~~L~~~F~~~l~~~~G~v~~v~i~~~~~g~srgfgFV~f~~~e~a~~a~~ 141 (274)
-.|+++.+|..- ..-++++|..- .+.+ =||+|++..+|+.|.+
T Consensus 188 p~e~Vk~lf~~e---ncPk~iscefa-----~N~n-WyITfesd~DAQqAyk 230 (684)
T KOG2591|consen 188 PIEVVKALFKGE---NCPKVISCEFA-----HNDN-WYITFESDTDAQQAYK 230 (684)
T ss_pred hHHHHHHHhccC---CCCCceeeeee-----ecCc-eEEEeecchhHHHHHH
Confidence 888999999821 00133444332 1122 2899999999977644
No 210
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=51.77 E-value=10 Score=32.28 Aligned_cols=62 Identities=8% Similarity=0.101 Sum_probs=43.4
Q ss_pred eeeecCCCcceeEEecCCCCCCCCHHHHHHHHHHHHHhhhCCcccceEEE-ecC--------CCCC----CeEEeeeCCH
Q 024012 67 LLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCI-YHV--------SWQS----NFGFCCELDD 133 (274)
Q Consensus 67 ~lf~vgnl~~~~~~~~~p~~~~~t~~~L~~~F~~~l~~~~G~v~~v~i~~-~~~--------g~sr----gfgFV~f~~~ 133 (274)
.+| ++++|. ...-.-|++++.++ |.|..|.+.. +.. |.++ .-|.|+|.+.
T Consensus 76 Vvy-lS~IPp-----------~m~~~rlReil~~y-----GeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~K 138 (278)
T KOG3152|consen 76 VVY-LSNIPP-----------YMDPVRLREILSQY-----GEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISK 138 (278)
T ss_pred EEE-eccCCC-----------ccCHHHHHHHHHhc-----cccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHH
Confidence 355 899998 47888999999988 9997666554 222 2333 2478999999
Q ss_pred HHHHHHH-CCCCc
Q 024012 134 ECAQELT-GVPGV 145 (274)
Q Consensus 134 e~a~~a~-~~~g~ 145 (274)
..|.++. .||+.
T Consensus 139 rvAK~iAe~Lnn~ 151 (278)
T KOG3152|consen 139 RVAKRIAELLNNT 151 (278)
T ss_pred HHHHHHHHHhCCC
Confidence 9995544 44553
No 211
>PF14111 DUF4283: Domain of unknown function (DUF4283)
Probab=47.82 E-value=63 Score=24.65 Aligned_cols=108 Identities=18% Similarity=0.105 Sum_probs=59.6
Q ss_pred CCHHHHHHHHHHHHHhhhCCcccceEEEecCCCCCCeEEeeeCCHHHHHHHHCCCCceeecCCCCCCCCCCCCCCCCCCC
Q 024012 89 VTKAQMVDRYAQILTKVLGNEKDAQMCIYHVSWQSNFGFCCELDDECAQELTGVPGVLSVQPDENFGSENKDYGGNNLQN 168 (274)
Q Consensus 89 ~t~~~L~~~F~~~l~~~~G~v~~v~i~~~~~g~srgfgFV~f~~~e~a~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 168 (274)
.+-..|.....+. .+....+.+..- ..++..+.|.++++++++++..... ..+.....
T Consensus 29 ~~~~~l~~~l~~~----W~~~~~~~i~~l----~~~~fl~~F~~~~d~~~vl~~~p~~--------------~~~~~~~l 86 (153)
T PF14111_consen 29 ISLSALEQELAKI----WKLKGGVKIRDL----GDNLFLFQFESEEDRQRVLKGGPWN--------------FNGHFLIL 86 (153)
T ss_pred CCHHHHHHHHHHH----hCCCCcEEEEEe----CCCeEEEEEEeccceeEEEeccccc--------------ccccchhh
Confidence 4555666655532 244334444421 3689999999999998877532111 00111111
Q ss_pred CCCCCCCCCCCCCCccccE--EEEcCCCCC-CCHHHHHHHHhccCCeEEEEEEe
Q 024012 169 SMVPSDSSEASPTQIKTKK--LFVTGLSFY-TSEKTLRAAFEGFGELVEVKIIM 219 (274)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~--lfV~nLp~~-~te~~L~~~F~~fG~i~~v~i~~ 219 (274)
..-.+... .......... |-|.|||.. .+++-|+.+-+.+|++..+....
T Consensus 87 ~~W~~~~~-~~~~~~~~~~vWVri~glP~~~~~~~~~~~i~~~iG~~i~vD~~t 139 (153)
T PF14111_consen 87 QRWSPDFN-PSEVKFEHIPVWVRIYGLPLHLWSEEILKAIGSKIGEPIEVDENT 139 (153)
T ss_pred hhhccccc-ccccceeccchhhhhccCCHHHhhhHHHHHHHHhcCCeEEEEcCC
Confidence 10000000 0011111222 456799987 58889999999999999886553
No 212
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=46.93 E-value=45 Score=21.83 Aligned_cols=19 Identities=21% Similarity=0.420 Sum_probs=15.6
Q ss_pred HHHHHHHhccCCeEEEEEE
Q 024012 200 KTLRAAFEGFGELVEVKII 218 (274)
Q Consensus 200 ~~L~~~F~~fG~i~~v~i~ 218 (274)
.+||++|++.|+|.-+.+-
T Consensus 9 ~~iR~~fs~lG~I~vLYvn 27 (62)
T PF15513_consen 9 AEIRQFFSQLGEIAVLYVN 27 (62)
T ss_pred HHHHHHHHhcCcEEEEEEc
Confidence 6899999999999766544
No 213
>KOG2295 consensus C2H2 Zn-finger protein [General function prediction only]
Probab=45.24 E-value=2.8 Score=39.32 Aligned_cols=73 Identities=12% Similarity=0.130 Sum_probs=54.5
Q ss_pred cccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEE
Q 024012 184 KTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWM 256 (274)
Q Consensus 184 ~~~~lfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~d~~~g~~rG~aFV~F~s~~~A~~Ai~~l~g~~l~G~~ 256 (274)
..++||+.|++++++-.+|..+++.+--+..+.+-.+.....-..++.|+|.---....|+.+||+..+....
T Consensus 230 ke~sll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn~irl~s~~ 302 (648)
T KOG2295|consen 230 KECSLLVRNILPNISVAEIENLCKGIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWALNGIRLRSNF 302 (648)
T ss_pred HHHHHHHhccCCcccHHHHHHHhccCchheeeeccCchHHHHHHHHhhHhhccccchHHHHHHhhhccccccc
Confidence 3567999999999999999999999876666655544323334457899998777777777788877665443
No 214
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=45.22 E-value=21 Score=30.74 Aligned_cols=81 Identities=22% Similarity=0.466 Sum_probs=52.7
Q ss_pred ccEEEEcCCCCC------------CCHHHHHHHHhccCCeEEEEEEec-C----CCCCc-----ceEE---------EEE
Q 024012 185 TKKLFVTGLSFY------------TSEKTLRAAFEGFGELVEVKIIMD-K----ISKRS-----KGYA---------FIE 233 (274)
Q Consensus 185 ~~~lfV~nLp~~------------~te~~L~~~F~~fG~i~~v~i~~d-~----~~g~~-----rG~a---------FV~ 233 (274)
..+|++.+||-. .+++-|+..|..||.|..|.|+.- + -+|+. .||+ ||+
T Consensus 149 pdti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdipicdplr~~mn~kisgiq~~gfg~g~dlffeayvq 228 (445)
T KOG2891|consen 149 PDTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIPICDPLREEMNGKISGIQFHGFGFGGDLFFEAYVQ 228 (445)
T ss_pred CCceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCcccchhHHHhcCccccceeeccccCcchhHHHHHH
Confidence 457888888753 357889999999999999988742 1 23443 3444 344
Q ss_pred eCCHHHHHHHHHHhCCceeC----CE----EeEEEeecCC
Q 024012 234 YTTEEAASAALKEMNGKIIN----GW----MIVVDVAKTT 265 (274)
Q Consensus 234 F~s~~~A~~Ai~~l~g~~l~----G~----~l~V~~a~~~ 265 (274)
|-....-..|+.+|.|..+. |+ .++|++.++.
T Consensus 229 fmeykgfa~amdalr~~k~akk~d~~ffqanvkvdfdrsr 268 (445)
T KOG2891|consen 229 FMEYKGFAQAMDALRGMKLAKKGDDGFFQANVKVDFDRSR 268 (445)
T ss_pred HHHHHhHHHHHHHHhcchHHhhcCCcccccccccccchhh
Confidence 54455556777777776642 32 4677776653
No 215
>COG5193 LHP1 La protein, small RNA-binding pol III transcript stabilizing protein and related La-motif-containing proteins involved in translation [Posttranslational modification, protein turnover, chaperones / Translation, ribosomal structure and biogenesis]
Probab=43.64 E-value=10 Score=34.35 Aligned_cols=61 Identities=15% Similarity=0.233 Sum_probs=51.7
Q ss_pred ccEEEEcCCCCCCCHH--------HHHHHHhc--cCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHH
Q 024012 185 TKKLFVTGLSFYTSEK--------TLRAAFEG--FGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALK 245 (274)
Q Consensus 185 ~~~lfV~nLp~~~te~--------~L~~~F~~--fG~i~~v~i~~d~~~g~~rG~aFV~F~s~~~A~~Ai~ 245 (274)
.+.+|+.+.+...+.+ ++...|.+ .+.+..++.-+|.....++|--|++|.....|++++.
T Consensus 174 qr~~y~n~fG~e~~~~a~~~e~~~d~~~~~p~h~h~~~~~i~~rrd~~nkn~~gSv~~efk~~~~~q~~nn 244 (438)
T COG5193 174 QRDVYQNGFGKEDVNNASRPEQQEDLEIQFPPHYHAPPSQIRNRRDWLNKNFRGSVFVEFKYFREAQRFNN 244 (438)
T ss_pred hhhHHhhcCCcccccccccchhhhhHHhhCCCcccCChhhccchhhhhhccccCcccccccChHHHHHHhc
Confidence 5678888888776655 89999998 6888899888887777889999999999999998884
No 216
>PF11245 DUF2544: Protein of unknown function (DUF2544); InterPro: IPR021407 This is a bacterial family of proteins with unknown function.
Probab=43.33 E-value=9.4 Score=31.67 Aligned_cols=9 Identities=33% Similarity=0.789 Sum_probs=8.7
Q ss_pred eccccCCcc
Q 024012 4 YDASCDTHF 12 (274)
Q Consensus 4 ~~~~~~~~~ 12 (274)
||+|||+.|
T Consensus 118 YDISW~Eny 126 (230)
T PF11245_consen 118 YDISWNENY 126 (230)
T ss_pred cccccccCe
Confidence 999999999
No 217
>KOG3424 consensus 40S ribosomal protein S24 [Translation, ribosomal structure and biogenesis]
Probab=42.96 E-value=1.1e+02 Score=22.87 Aligned_cols=53 Identities=19% Similarity=0.275 Sum_probs=33.2
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhhhCCcccce-EEE----ecCCCCCCeEEeeeCCHHHHHHHH
Q 024012 83 KPGVGVVTKAQMVDRYAQILTKVLGNEKDAQ-MCI----YHVSWQSNFGFCCELDDECAQELT 140 (274)
Q Consensus 83 ~p~~~~~t~~~L~~~F~~~l~~~~G~v~~v~-i~~----~~~g~srgfgFV~f~~~e~a~~a~ 140 (274)
-|.-+.++.+||++-..+. +-.-.|+. +.. ...|++.|||.| |.+.|.|.+..
T Consensus 29 HPG~a~vsK~EirEKla~m----Ykt~~d~V~vfgfrt~~GggkstgfalI-Ydsve~akkfE 86 (132)
T KOG3424|consen 29 HPGKANVSKTEIREKLAKM----YKTTPDAVFVFGFRTHFGGGKSTGFALI-YDSVEYAKKFE 86 (132)
T ss_pred cCCCCCCCHHHHHHHHHHH----hcCCcceEEEEEeeeccCCcccceeeee-eehHHHHHhcC
Confidence 3455679999999977664 22233333 222 344667788866 78888887643
No 218
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=42.50 E-value=61 Score=28.28 Aligned_cols=49 Identities=10% Similarity=-0.002 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHhhhCCcccceEEEecCCC-CC-CeEEeeeCCHHHH-HHHHCCCCce
Q 024012 93 QMVDRYAQILTKVLGNEKDAQMCIYHVSW-QS-NFGFCCELDDECA-QELTGVPGVL 146 (274)
Q Consensus 93 ~L~~~F~~~l~~~~G~v~~v~i~~~~~g~-sr-gfgFV~f~~~e~a-~~a~~~~g~~ 146 (274)
++.+-.+++ |.|..|.|.-.+.-. .. =--||+|...++| +++..|||..
T Consensus 302 e~keEceKy-----g~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRy 353 (378)
T KOG1996|consen 302 ETKEECEKY-----GKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRY 353 (378)
T ss_pred HHHHHHHhh-----cceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCce
Confidence 444555555 999888776542211 22 3469999999999 7778888864
No 219
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=42.00 E-value=1.4e+02 Score=27.38 Aligned_cols=68 Identities=15% Similarity=0.123 Sum_probs=46.2
Q ss_pred CCcceeEEecCCCCCCCCHHHHHHHHHHHHHhhhCCcccceEEE-ecCCCCCCeEEeeeCCHHHHHHHHCCCC-ceeecC
Q 024012 73 TTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCI-YHVSWQSNFGFCCELDDECAQELTGVPG-VLSVQP 150 (274)
Q Consensus 73 nl~~~~~~~~~p~~~~~t~~~L~~~F~~~l~~~~G~v~~v~i~~-~~~g~srgfgFV~f~~~e~a~~a~~~~g-~~~~~~ 150 (274)
.|||-|=+.|+|.. ..-++|...|.++ +. +.++|+. + .--+|-.|.+...|..++.|.. ++++++
T Consensus 389 dlpHVlEIydfp~e--fkteDll~~f~~y-----q~-kgfdIkWvD-----dthalaVFss~~~AaeaLt~kh~~lKiRp 455 (528)
T KOG4483|consen 389 DLPHVLEIYDFPDE--FKTEDLLKAFETY-----QN-KGFDIKWVD-----DTHALAVFSSVNRAAEALTLKHDWLKIRP 455 (528)
T ss_pred cccceeEeccCchh--hccHHHHHHHHHh-----hc-CCceeEEee-----cceeEEeecchHHHHHHhhccCceEEeee
Confidence 35665556666653 5667899999988 33 2344443 3 4478999999999999999843 566666
Q ss_pred CCC
Q 024012 151 DEN 153 (274)
Q Consensus 151 ~~~ 153 (274)
...
T Consensus 456 Laq 458 (528)
T KOG4483|consen 456 LAQ 458 (528)
T ss_pred hhh
Confidence 543
No 220
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=41.86 E-value=1.3e+02 Score=23.49 Aligned_cols=43 Identities=12% Similarity=0.166 Sum_probs=30.5
Q ss_pred CHHHHHHHHHHHHHhhhCCcccceEEEecCCCCCCeEEeeeCCHHHHHHHH
Q 024012 90 TKAQMVDRYAQILTKVLGNEKDAQMCIYHVSWQSNFGFCCELDDECAQELT 140 (274)
Q Consensus 90 t~~~L~~~F~~~l~~~~G~v~~v~i~~~~~g~srgfgFV~f~~~e~a~~a~ 140 (274)
..++|+..-.+. +.||+|.+|.++ .|--|.|.|.|..+|-.|.
T Consensus 100 ~~edl~sV~~~L--s~fGpI~SVT~c------GrqsavVvF~d~~SAC~Av 142 (166)
T PF15023_consen 100 PTEDLKSVIQRL--SVFGPIQSVTLC------GRQSAVVVFKDITSACKAV 142 (166)
T ss_pred hHHHHHHHHHHH--HhcCCcceeeec------CCceEEEEehhhHHHHHHH
Confidence 345666655533 567999887766 3567999999999994443
No 221
>smart00596 PRE_C2HC PRE_C2HC domain.
Probab=41.34 E-value=44 Score=22.41 Aligned_cols=61 Identities=13% Similarity=0.256 Sum_probs=42.2
Q ss_pred HHHHHHHhccC-CeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEeEEEeec
Q 024012 200 KTLRAAFEGFG-ELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVDVAK 263 (274)
Q Consensus 200 ~~L~~~F~~fG-~i~~v~i~~d~~~g~~rG~aFV~F~s~~~A~~Ai~~l~g~~l~G~~l~V~~a~ 263 (274)
++|.+.|...| ++..+.-+..+.++.+-..=||+-....+-.. -|+=+.|+|++|.|+-..
T Consensus 2 ~~I~~~L~~~G~~v~~i~~m~~~~~r~P~nmf~vel~~~~~~~~---Il~ik~Lg~~~V~VEr~~ 63 (69)
T smart00596 2 SQIEEALKDIGFPVLFIHNMLNRDTKNPQNMFEVELVPAANGKE---ILNIKTLGGQRVTVERPH 63 (69)
T ss_pred HHHHHHHHHcCCceeEEEcccccCCCCcceeEEEEeeecCCCcc---eEeehhhCCeeEEEecCc
Confidence 46777888887 47788777777667777788888876543333 334456789998887543
No 222
>PF07530 PRE_C2HC: Associated with zinc fingers; InterPro: IPR006579 This domain is present in proteins found exclusively in the arthropods, including a number of Drosophila species, the silk moth and the gypsy moth. These proteins are possibly involved in RNA binding or single strand DNA binding.
Probab=39.16 E-value=73 Score=21.20 Aligned_cols=63 Identities=11% Similarity=0.232 Sum_probs=42.8
Q ss_pred HHHHHHHhccC-CeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEeEEEeecCC
Q 024012 200 KTLRAAFEGFG-ELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVDVAKTT 265 (274)
Q Consensus 200 ~~L~~~F~~fG-~i~~v~i~~d~~~g~~rG~aFV~F~s~~~A~~Ai~~l~g~~l~G~~l~V~~a~~~ 265 (274)
++|.+.|...| +|..+.-+..+.++..-..-||+.+...+...+ ++=+.++|..|+|+..+.+
T Consensus 2 ~~I~~~L~~~G~~v~~i~~~~~~~~k~pl~mf~veL~p~~~~k~i---~~Ik~l~~~~V~vE~~~k~ 65 (68)
T PF07530_consen 2 EEIKEELKDQGHPVRNIHNMHSRNTKKPLNMFFVELEPKPNNKEI---YKIKTLCGQRVKVERPRKR 65 (68)
T ss_pred HHHHHHHHHcCCceEEEEccccCCCCCCceEEEEeeccCccccce---eehHhhCCeEEEEecCCCC
Confidence 46777777766 467776666665666777888888776553333 3446688999999876543
No 223
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=31.51 E-value=1.8e+02 Score=20.26 Aligned_cols=58 Identities=12% Similarity=0.189 Sum_probs=42.4
Q ss_pred EEEEcCCCCCCCHHHHHHHHhc-cCC-eEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHh
Q 024012 187 KLFVTGLSFYTSEKTLRAAFEG-FGE-LVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEM 247 (274)
Q Consensus 187 ~lfV~nLp~~~te~~L~~~F~~-fG~-i~~v~i~~d~~~g~~rG~aFV~F~s~~~A~~Ai~~l 247 (274)
+-|+--.+...+..+|++.++. ||. |.+|....-+ .+ .--|||.+..-+.|......+
T Consensus 22 n~y~F~V~~~anK~eIK~AvE~lf~VkV~~VnT~~~~-~~--~KKA~V~L~~g~~A~~va~ki 81 (84)
T PRK14548 22 NKLTFIVDRRATKPDIKRAVEELFDVKVEKVNTLITP-KG--EKKAYVKLAEEYDAEEIASRL 81 (84)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcC-CC--cEEEEEEeCCCCcHHHHHHhh
Confidence 3555567789999999999987 664 7788777654 22 236999999988887776543
No 224
>PF11411 DNA_ligase_IV: DNA ligase IV; InterPro: IPR021536 DNA ligase IV along with Xrcc4 functions in DNA non-homologous end joining. This process is required to mend double-strand breaks. Upon ligase binding to an Xrcc4 dimer, the helical tails unwind leading to a flat interaction surface []. ; GO: 0003910 DNA ligase (ATP) activity; PDB: 3II6_Y 2E2W_A 1IK9_C.
Probab=31.26 E-value=39 Score=19.50 Aligned_cols=16 Identities=25% Similarity=0.376 Sum_probs=10.3
Q ss_pred CCCCHHHHHHHHhccC
Q 024012 195 FYTSEKTLRAAFEGFG 210 (274)
Q Consensus 195 ~~~te~~L~~~F~~fG 210 (274)
.++++++|++.|.+.+
T Consensus 19 ~Dtd~~~Lk~vF~~i~ 34 (36)
T PF11411_consen 19 VDTDEDQLKEVFNRIK 34 (36)
T ss_dssp S---HHHHHHHHHCS-
T ss_pred ccCCHHHHHHHHHHhc
Confidence 3578999999998764
No 225
>PRK09507 cspE cold shock protein CspE; Reviewed
Probab=29.83 E-value=16 Score=24.42 Aligned_cols=13 Identities=31% Similarity=0.455 Sum_probs=9.3
Q ss_pred CCCCCeEEeeeCC
Q 024012 120 SWQSNFGFCCELD 132 (274)
Q Consensus 120 g~srgfgFV~f~~ 132 (274)
...||||||+=.+
T Consensus 12 ~~~kGyGFI~~~~ 24 (69)
T PRK09507 12 NESKGFGFITPED 24 (69)
T ss_pred eCCCCcEEEecCC
Confidence 3459999997544
No 226
>KOG1295 consensus Nonsense-mediated decay protein Upf3 [RNA processing and modification]
Probab=29.83 E-value=76 Score=28.69 Aligned_cols=69 Identities=17% Similarity=0.173 Sum_probs=48.5
Q ss_pred ccEEEEcCCCCCCCHHHHHHHHhccCC-eEEEEEEecC-C-CCCcceEEEEEeCCHHHHHHHHHHhCCceeC
Q 024012 185 TKKLFVTGLSFYTSEKTLRAAFEGFGE-LVEVKIIMDK-I-SKRSKGYAFIEYTTEEAASAALKEMNGKIIN 253 (274)
Q Consensus 185 ~~~lfV~nLp~~~te~~L~~~F~~fG~-i~~v~i~~d~-~-~g~~rG~aFV~F~s~~~A~~Ai~~l~g~~l~ 253 (274)
..+|-|.+||+..++++|.+...+|-. +....+.... . ...-.+.|+|.|...++...-...++|+++-
T Consensus 7 ~~Kvv~rrlpp~l~~~~~~eqi~p~~~~v~~~~F~~a~~s~~~~~ysrayinFk~~~dv~ef~~~f~g~ifl 78 (376)
T KOG1295|consen 7 KVKVVVRRLPPKLTEEQLLEQINPFPEHVNWEFFAKADESLRNHKYSRAYINFKNPEDVEEFRRRFDGYIFL 78 (376)
T ss_pred ceeeeeecCCCcccHHHHhhhcCCCccccchheeccccccchhhhhhhhhhccccHHHHHHHHhhCCceEEe
Confidence 457889999999999999988877633 2222232111 0 0122578999999999988888888888764
No 227
>KOG4008 consensus rRNA processing protein RRP7 [RNA processing and modification]
Probab=29.56 E-value=47 Score=28.01 Aligned_cols=33 Identities=18% Similarity=0.394 Sum_probs=28.3
Q ss_pred ccccEEEEcCCCCCCCHHHHHHHHhccCCeEEE
Q 024012 183 IKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEV 215 (274)
Q Consensus 183 ~~~~~lfV~nLp~~~te~~L~~~F~~fG~i~~v 215 (274)
....+||+-|+|..+|++.|..+.++.|-+..+
T Consensus 38 ~eKd~lfl~Nvp~~~tee~lkr~vsqlg~vq~~ 70 (261)
T KOG4008|consen 38 NEKDCLFLVNVPLLSTEEHLKRFVSQLGHVQEL 70 (261)
T ss_pred ccccceeeecccccccHHHHHHHHHHhhhhhhe
Confidence 347789999999999999999999999865544
No 228
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=27.98 E-value=78 Score=21.11 Aligned_cols=26 Identities=23% Similarity=0.225 Sum_probs=21.2
Q ss_pred EEEEEeCCHHHHHHHHHHhCCceeCC
Q 024012 229 YAFIEYTTEEAASAALKEMNGKIING 254 (274)
Q Consensus 229 ~aFV~F~s~~~A~~Ai~~l~g~~l~G 254 (274)
+.+|.|.|..+|.+|-+.|....+.+
T Consensus 3 ~~~i~F~st~~a~~~ek~lk~~gi~~ 28 (73)
T PF11823_consen 3 YYLITFPSTHDAMKAEKLLKKNGIPV 28 (73)
T ss_pred eEEEEECCHHHHHHHHHHHHHCCCcE
Confidence 78999999999999988886654433
No 229
>PF03439 Spt5-NGN: Early transcription elongation factor of RNA pol II, NGN section; InterPro: IPR005100 Spt5p and prokaryotic NusG are shown to contain a novel 'NGN' domain. The combined NGN and KOW motif regions of Spt5 form the binding domain with Spt4 []. Spt5 complexes with Spt4 as a 1:1 heterodimer snf this Spt5-Spt4 complex regulates early transcription elongation by RNA polymerase II and has an imputed role in pre-mRNA processing via its physical association with mRNA capping enzymes. The Schizosaccharomyces pombe core Spt5-Spt4 complex is a heterodimer bearing a trypsin-resistant Spt4-binding domain within the Spt5 subunit []. ; PDB: 3H7H_B 3QQC_D 3P8B_B 2EXU_A.
Probab=25.86 E-value=1.1e+02 Score=21.10 Aligned_cols=36 Identities=19% Similarity=0.329 Sum_probs=24.3
Q ss_pred CeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCce
Q 024012 211 ELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKI 251 (274)
Q Consensus 211 ~i~~v~i~~d~~~g~~rG~aFV~F~s~~~A~~Ai~~l~g~~ 251 (274)
.|.++... + .-+||-||+=.+..+...|++.+.+..
T Consensus 33 ~I~Si~~~-~----~lkGyIyVEA~~~~~V~~ai~gi~~i~ 68 (84)
T PF03439_consen 33 NIYSIFAP-D----SLKGYIYVEAERESDVKEAIRGIRHIR 68 (84)
T ss_dssp ---EEEE--T----TSTSEEEEEESSHHHHHHHHTT-TTEE
T ss_pred ceEEEEEe-C----CCceEEEEEeCCHHHHHHHHhccccee
Confidence 35555433 3 258999999999999999998876543
No 230
>PF08206 OB_RNB: Ribonuclease B OB domain; InterPro: IPR013223 This domain includes the N-terminal OB domain found in ribonuclease B proteins in one or two copies.; PDB: 2ID0_D 2IX1_A 2IX0_A.
Probab=24.88 E-value=53 Score=20.90 Aligned_cols=12 Identities=33% Similarity=0.534 Sum_probs=8.7
Q ss_pred CCCCeEEeeeCC
Q 024012 121 WQSNFGFCCELD 132 (274)
Q Consensus 121 ~srgfgFV~f~~ 132 (274)
..+|||||...+
T Consensus 6 ~~~GfGFv~~~~ 17 (58)
T PF08206_consen 6 HPKGFGFVIPDD 17 (58)
T ss_dssp -SSS-EEEEECT
T ss_pred EcCCCEEEEECC
Confidence 368999999887
No 231
>PRK15464 cold shock-like protein CspH; Provisional
Probab=24.82 E-value=39 Score=22.66 Aligned_cols=13 Identities=31% Similarity=0.340 Sum_probs=9.3
Q ss_pred CCCCCeEEeeeCC
Q 024012 120 SWQSNFGFCCELD 132 (274)
Q Consensus 120 g~srgfgFV~f~~ 132 (274)
...||||||+=.+
T Consensus 13 n~~KGfGFI~~~~ 25 (70)
T PRK15464 13 DRKSGKGFIIPSD 25 (70)
T ss_pred ECCCCeEEEccCC
Confidence 3459999996444
No 232
>PRK11901 hypothetical protein; Reviewed
Probab=24.73 E-value=1.8e+02 Score=25.88 Aligned_cols=60 Identities=17% Similarity=0.237 Sum_probs=40.4
Q ss_pred ccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCcceEEEE--EeCCHHHHHHHHHHhCC
Q 024012 185 TKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFI--EYTTEEAASAALKEMNG 249 (274)
Q Consensus 185 ~~~lfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~d~~~g~~rG~aFV--~F~s~~~A~~Ai~~l~g 249 (274)
..+|-|..+ .+++.|+.+-.+++ +..+.+..-...|+.- |..| .|.+.++|..|+..|--
T Consensus 245 ~YTLQL~Aa---s~~~~L~~f~~~~~-L~~~~VYqT~RnGkpW-YVVvyG~Y~Sr~eAk~Ai~sLPa 306 (327)
T PRK11901 245 HYTLQLSSA---SRSDTLNAYAKKQN-LSHYHVYETKRDGKPW-YVLVSGNYASSAEAKRAIATLPA 306 (327)
T ss_pred CeEEEeecC---CCHHHHHHHHHHcC-cCceEEEEEEECCceE-EEEEecCcCCHHHHHHHHHhCCH
Confidence 456666554 45788888888775 4556666654445432 4433 58999999999998854
No 233
>PRK09937 stationary phase/starvation inducible regulatory protein CspD; Provisional
Probab=24.01 E-value=47 Score=22.55 Aligned_cols=12 Identities=33% Similarity=0.703 Sum_probs=8.7
Q ss_pred CCCCCeEEeeeC
Q 024012 120 SWQSNFGFCCEL 131 (274)
Q Consensus 120 g~srgfgFV~f~ 131 (274)
...||||||+=.
T Consensus 10 n~~KGfGFI~~~ 21 (74)
T PRK09937 10 NNAKGFGFICPE 21 (74)
T ss_pred eCCCCeEEEeeC
Confidence 445999999543
No 234
>PRK14998 cold shock-like protein CspD; Provisional
Probab=23.70 E-value=48 Score=22.40 Aligned_cols=13 Identities=31% Similarity=0.652 Sum_probs=9.3
Q ss_pred CCCCCeEEeeeCC
Q 024012 120 SWQSNFGFCCELD 132 (274)
Q Consensus 120 g~srgfgFV~f~~ 132 (274)
...||||||+=.+
T Consensus 10 n~~kGfGFI~~~~ 22 (73)
T PRK14998 10 NNAKGFGFICPEG 22 (73)
T ss_pred eCCCceEEEecCC
Confidence 4459999996443
No 235
>PF14972 Mito_morph_reg: Mitochondrial morphogenesis regulator
Probab=23.33 E-value=27 Score=27.53 Aligned_cols=26 Identities=46% Similarity=0.901 Sum_probs=17.1
Q ss_pred eeccccCCcceeeeecChhh-HHHHhcCC
Q 024012 3 IYDASCDTHFGFCCNVDEET-SRELARLP 30 (274)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 30 (274)
+|++||. |++||++-.+- .++|+.+|
T Consensus 95 lY~vsWq--~DPCckYQVe~d~~~L~~lp 121 (165)
T PF14972_consen 95 LYTVSWQ--FDPCCKYQVEKDRRELAKLP 121 (165)
T ss_pred HHhcccc--cCCCeeeEeccCcchhhcCC
Confidence 6999996 56788776443 44455554
No 236
>PF14657 Integrase_AP2: AP2-like DNA-binding integrase domain
Probab=22.80 E-value=1.8e+02 Score=17.33 Aligned_cols=30 Identities=20% Similarity=0.249 Sum_probs=21.5
Q ss_pred ecCCCCCcceEEEEEeCCHHHHHHHHHHhC
Q 024012 219 MDKISKRSKGYAFIEYTTEEAASAALKEMN 248 (274)
Q Consensus 219 ~d~~~g~~rG~aFV~F~s~~~A~~Ai~~l~ 248 (274)
.+..+|+.+-.--=-|.+..+|.+++..+.
T Consensus 9 ~~~~~Gkrk~~~k~GF~TkkeA~~~~~~~~ 38 (46)
T PF14657_consen 9 YDDETGKRKQKTKRGFKTKKEAEKALAKIE 38 (46)
T ss_pred EECCCCCEEEEEcCCCCcHHHHHHHHHHHH
Confidence 555678766444434999999999987763
No 237
>PRK15463 cold shock-like protein CspF; Provisional
Probab=22.23 E-value=48 Score=22.20 Aligned_cols=13 Identities=23% Similarity=0.166 Sum_probs=9.2
Q ss_pred CCCCCeEEeeeCC
Q 024012 120 SWQSNFGFCCELD 132 (274)
Q Consensus 120 g~srgfgFV~f~~ 132 (274)
...||||||+=.+
T Consensus 13 n~~kGfGFI~~~~ 25 (70)
T PRK15463 13 DGKSGKGLITPSD 25 (70)
T ss_pred eCCCceEEEecCC
Confidence 3459999996443
No 238
>KOG4213 consensus RNA-binding protein La [RNA processing and modification]
Probab=22.00 E-value=1.2e+02 Score=24.60 Aligned_cols=55 Identities=20% Similarity=0.224 Sum_probs=36.9
Q ss_pred ccEEEEcCCCCCCCHHHHHHHH--hccCCeEEEEEEecCCCC--CcceEEEEEeCCHHHHHHHHHH
Q 024012 185 TKKLFVTGLSFYTSEKTLRAAF--EGFGELVEVKIIMDKISK--RSKGYAFIEYTTEEAASAALKE 246 (274)
Q Consensus 185 ~~~lfV~nLp~~~te~~L~~~F--~~fG~i~~v~i~~d~~~g--~~rG~aFV~F~s~~~A~~Ai~~ 246 (274)
.+++|.. .|+++|.++- .. |.+..+..-+.. .+ ..+|--||+|.+.+.|.+.++.
T Consensus 111 ~r~v~~K-----~td~ql~~l~qw~~-~k~~nv~mr~~~-~k~~~fkGsvkv~f~tk~qa~a~~~~ 169 (205)
T KOG4213|consen 111 ERTVYKK-----ITDDQLDDLNQWAS-GKGHNVKMRRHG-NKAHPFKGSVKVTFQTKEQAFANDDT 169 (205)
T ss_pred Hhhhhcc-----CCHHHHHHHHHHhc-ccceEeeccccC-CCCCCCCCceEEEeecHHHHHhhhhh
Confidence 4567766 4555554443 22 788887665443 33 5678899999999999887754
No 239
>PF04026 SpoVG: SpoVG; InterPro: IPR007170 This is a stage V sporulation protein G. It is essential for sporulation and specific to stage V sporulation in Bacillus megaterium and Bacillus subtilis []. In B. subtilis, expression decreases after 30-60 minutes of cold shock [].; GO: 0030435 sporulation resulting in formation of a cellular spore; PDB: 2IA9_F 2I9X_B 2I9Z_A.
Probab=21.92 E-value=2.1e+02 Score=19.95 Aligned_cols=26 Identities=15% Similarity=0.309 Sum_probs=20.9
Q ss_pred CeEEEEEEecCCCCCcceEEEEEeCC
Q 024012 211 ELVEVKIIMDKISKRSKGYAFIEYTT 236 (274)
Q Consensus 211 ~i~~v~i~~d~~~g~~rG~aFV~F~s 236 (274)
+|.+|+|..-...|+-+|+|=|.|.+
T Consensus 2 ~itdVri~~~~~~~~lka~asV~~dd 27 (84)
T PF04026_consen 2 KITDVRIRKIEPEGKLKAFASVTFDD 27 (84)
T ss_dssp -EEEEEEEETTSSSSEEEEEEEEETT
T ss_pred ccEEEEEEEecCCCCEEEEEEEEECC
Confidence 47788888766568889999999986
No 240
>cd01780 PLC_epsilon_RA Ubiquitin-like domain of Phosphatidylinositide-specific phospholipase. PLC_epsilon_RA Phosphatidylinositide-specific phospholipase C (PLC) is a signaling enzyme that hydrolyzes membrane phospholipids to generate inositol triphosphate. PLC-epsilon represents a novel forth class of PLC that has a PLC catalytic core domain, a CDC25 guanine nucleotide exchange factor domain and two RA (Ras-association) domains of which the second is critical for Ras activation of the enzyme.
Probab=21.54 E-value=41 Score=23.90 Aligned_cols=14 Identities=21% Similarity=0.610 Sum_probs=11.1
Q ss_pred CceeccccCCccee
Q 024012 1 MCIYDASCDTHFGF 14 (274)
Q Consensus 1 ~~~~~~~~~~~~~~ 14 (274)
+|||+||=|.+|-.
T Consensus 3 v~V~~vs~dqP~~i 16 (93)
T cd01780 3 VCVHNVSPDQPYAI 16 (93)
T ss_pred EEEecCCCCCCeeE
Confidence 58888888888844
No 241
>PRK10943 cold shock-like protein CspC; Provisional
Probab=21.22 E-value=50 Score=21.98 Aligned_cols=13 Identities=31% Similarity=0.496 Sum_probs=9.3
Q ss_pred CCCCCeEEeeeCC
Q 024012 120 SWQSNFGFCCELD 132 (274)
Q Consensus 120 g~srgfgFV~f~~ 132 (274)
...||||||+=.+
T Consensus 12 ~~~kGfGFI~~~~ 24 (69)
T PRK10943 12 NESKGFGFITPAD 24 (69)
T ss_pred eCCCCcEEEecCC
Confidence 4459999997543
No 242
>TIGR02381 cspD cold shock domain protein CspD. This model represents what appears to be a phylogenetically distinct clade, containing E. coli CspD and related proteobacterial proteins within the larger family of cold shock domain proteins described by pfam model pfam00313. The gene symbol cspD may have been used idependently for other subfamilies of cold shock domain proteins, such as for B. subtilis CspD. These proteins typically are shorter than 70 amino acids. In E. coli, CspD is a stress response protein induced in stationary phase. This homodimer binds single-stranded DNA and appears to inhibit DNA replication.
Probab=20.95 E-value=59 Score=21.52 Aligned_cols=13 Identities=31% Similarity=0.652 Sum_probs=9.7
Q ss_pred CCCCCeEEeeeCC
Q 024012 120 SWQSNFGFCCELD 132 (274)
Q Consensus 120 g~srgfgFV~f~~ 132 (274)
...||||||.=.+
T Consensus 10 ~~~kGfGFI~~~~ 22 (68)
T TIGR02381 10 NNAKGFGFICPEG 22 (68)
T ss_pred eCCCCeEEEecCC
Confidence 4459999997554
No 243
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=20.50 E-value=1.3e+02 Score=26.41 Aligned_cols=16 Identities=19% Similarity=0.038 Sum_probs=14.2
Q ss_pred EEeeeCCHHHHHHHHC
Q 024012 126 GFCCELDDECAQELTG 141 (274)
Q Consensus 126 gFV~f~~~e~a~~a~~ 141 (274)
|||+|.+..+|+.+.+
T Consensus 1 aFVtF~~~~~a~~~~q 16 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQ 16 (325)
T ss_pred CEEEECCHHHHHHHHH
Confidence 7999999999987775
No 244
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=20.46 E-value=2.9e+02 Score=18.86 Aligned_cols=58 Identities=14% Similarity=0.214 Sum_probs=41.6
Q ss_pred EEEEcCCCCCCCHHHHHHHHhc-cC-CeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHh
Q 024012 187 KLFVTGLSFYTSEKTLRAAFEG-FG-ELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEM 247 (274)
Q Consensus 187 ~lfV~nLp~~~te~~L~~~F~~-fG-~i~~v~i~~d~~~g~~rG~aFV~F~s~~~A~~Ai~~l 247 (274)
.-|+-..+...+..+|++.++. || .|.+|..+.-+ .+ .--|||.+..-+.|...-..+
T Consensus 15 n~y~F~V~~~anK~eIK~avE~lf~VkV~~Vnt~~~~-~~--~KKA~VtL~~g~~a~~va~k~ 74 (77)
T TIGR03636 15 NKLTFIVDRKATKGDIKRAVEKLFDVKVEKVNTLITP-RG--EKKAYVKLAEEYAAEEIASRL 74 (77)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcC-CC--ceEEEEEECCCCcHHHHHHhh
Confidence 4566677889999999999987 66 36777766554 22 226999998888877665443
No 245
>PRK11558 putative ssRNA endonuclease; Provisional
Probab=20.15 E-value=1.8e+02 Score=20.90 Aligned_cols=49 Identities=14% Similarity=0.111 Sum_probs=28.4
Q ss_pred ccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCcceEEEEEeCC
Q 024012 185 TKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTT 236 (274)
Q Consensus 185 ~~~lfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~d~~~g~~rG~aFV~F~s 236 (274)
..-|||++++..+.+.--..+-+.++.=.-+-+..+ ++. .||+|-.+..
T Consensus 27 ~~GVyVg~~S~rVRd~lW~~v~~~~~~G~avmv~~~--~~e-qG~~~~t~G~ 75 (97)
T PRK11558 27 RAGVYVGDVSRRIREMIWQQVTQLAEEGNVVMAWAT--NTE-SGFEFQTFGE 75 (97)
T ss_pred CCCcEEcCCCHHHHHHHHHHHHHhCCCCcEEEEEcC--CCC-CCcEEEecCC
Confidence 456999998888776544444444433222323333 233 3899988765
Done!