Query 024012
Match_columns 274
No_of_seqs 303 out of 2467
Neff 9.0
Searched_HMMs 29240
Date Mon Mar 25 16:39:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024012.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/024012hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1l3k_A Heterogeneous nuclear r 100.0 3.3E-34 1.1E-38 234.4 16.3 174 63-268 11-186 (196)
2 3md3_A Nuclear and cytoplasmic 100.0 3.2E-34 1.1E-38 228.0 15.3 165 66-264 1-166 (166)
3 4f02_A Polyadenylate-binding p 100.0 1E-34 3.5E-39 241.5 12.0 169 61-265 11-181 (213)
4 2yh0_A Splicing factor U2AF 65 100.0 1.3E-33 4.6E-38 231.2 18.0 183 64-268 3-197 (198)
5 2g4b_A Splicing factor U2AF 65 100.0 2.6E-33 8.8E-38 224.5 16.3 164 64-263 3-172 (172)
6 2cjk_A Nuclear polyadenylated 100.0 1.3E-34 4.3E-39 231.0 8.3 165 64-266 2-167 (167)
7 1fxl_A Paraneoplastic encephal 100.0 1.5E-33 5E-38 224.4 14.3 162 65-262 2-167 (167)
8 1b7f_A Protein (SXL-lethal pro 100.0 1.7E-33 5.9E-38 224.5 14.0 162 65-262 3-168 (168)
9 2qfj_A FBP-interacting repress 100.0 2.7E-33 9.4E-38 232.4 15.2 180 64-269 27-209 (216)
10 3nmr_A Cugbp ELAV-like family 100.0 8.3E-33 2.8E-37 221.9 15.2 167 64-263 2-175 (175)
11 1fje_B Nucleolin RBD12, protei 100.0 2.1E-32 7.3E-37 220.0 16.3 167 61-266 9-175 (175)
12 2ghp_A U4/U6 snRNA-associated 100.0 6.7E-31 2.3E-35 228.2 14.2 171 64-266 116-292 (292)
13 3smz_A Protein raver-1, ribonu 100.0 6.4E-30 2.2E-34 221.2 15.7 170 64-267 94-266 (284)
14 2adc_A Polypyrimidine tract-bi 100.0 1.3E-29 4.6E-34 212.8 15.7 179 62-265 31-228 (229)
15 2ghp_A U4/U6 snRNA-associated 100.0 8.6E-30 2.9E-34 221.2 13.8 163 61-268 37-200 (292)
16 3pgw_A U1-A; protein-RNA compl 100.0 3.4E-29 1.2E-33 216.4 17.1 177 63-263 7-281 (282)
17 3tyt_A Heterogeneous nuclear r 100.0 4E-30 1.4E-34 212.4 9.9 176 64-262 3-204 (205)
18 1qm9_A Polypyrimidine tract-bi 100.0 1.8E-29 6.1E-34 207.0 12.2 176 64-265 2-197 (198)
19 3smz_A Protein raver-1, ribonu 100.0 5.2E-29 1.8E-33 215.4 14.6 156 64-267 21-177 (284)
20 3sde_A Paraspeckle component 1 100.0 7.4E-29 2.5E-33 212.3 14.7 156 63-266 20-180 (261)
21 2kn4_A Immunoglobulin G-bindin 99.9 1.4E-26 4.9E-31 183.3 15.5 146 112-270 3-155 (158)
22 4fxv_A ELAV-like protein 1; RN 99.9 9.6E-25 3.3E-29 159.3 12.6 82 184-265 18-99 (99)
23 2lxi_A RNA-binding protein 10; 99.9 2.1E-24 7.3E-29 155.1 7.3 86 185-270 1-88 (91)
24 3s8s_A Histone-lysine N-methyl 99.9 6.5E-23 2.2E-27 152.4 12.8 84 183-266 4-87 (110)
25 2cq0_A Eukaryotic translation 99.9 1.6E-22 5.4E-27 148.5 13.7 91 181-271 11-101 (103)
26 3md1_A Nuclear and cytoplasmic 99.9 1.4E-22 4.7E-27 142.8 12.7 83 185-267 1-83 (83)
27 3bs9_A Nucleolysin TIA-1 isofo 99.9 1.2E-22 4.1E-27 144.4 12.3 83 184-266 5-87 (87)
28 2cqb_A Peptidyl-prolyl CIS-tra 99.9 9.7E-23 3.3E-27 149.3 11.5 91 182-272 9-99 (102)
29 2lea_A Serine/arginine-rich sp 99.9 1.8E-23 6.1E-28 161.2 7.7 92 179-270 41-132 (135)
30 1whw_A Hypothetical protein ri 99.9 1.6E-22 5.6E-27 147.3 12.1 90 183-272 6-95 (99)
31 2dgo_A Cytotoxic granule-assoc 99.9 5.5E-22 1.9E-26 148.5 15.2 90 180-269 10-99 (115)
32 2dgs_A DAZ-associated protein 99.9 2.1E-22 7.1E-27 146.8 12.4 90 182-272 7-96 (99)
33 2dng_A Eukaryotic translation 99.9 5E-22 1.7E-26 145.8 14.4 90 181-272 11-100 (103)
34 2cpz_A CUG triplet repeat RNA- 99.9 3.5E-22 1.2E-26 149.6 13.7 90 182-271 22-111 (115)
35 2dnz_A Probable RNA-binding pr 99.9 2.1E-22 7.3E-27 145.5 11.8 89 184-272 4-92 (95)
36 1x5u_A Splicing factor 3B subu 99.9 2.1E-22 7E-27 148.4 11.8 91 180-270 10-100 (105)
37 2dnm_A SRP46 splicing factor; 99.9 1.3E-22 4.4E-27 149.0 10.5 91 180-270 8-98 (103)
38 2lkz_A RNA-binding protein 5; 99.9 4.6E-23 1.6E-27 149.0 7.8 81 184-264 8-94 (95)
39 1x5s_A Cold-inducible RNA-bind 99.9 1.6E-22 5.6E-27 148.1 10.9 92 181-272 8-99 (102)
40 4f25_A Polyadenylate-binding p 99.9 2.7E-22 9.2E-27 150.4 12.2 82 184-267 4-85 (115)
41 1x5t_A Splicing factor 3B subu 99.9 1.7E-22 5.9E-27 146.3 10.8 88 184-271 4-92 (96)
42 2cqc_A Arginine/serine-rich sp 99.9 6.6E-22 2.3E-26 142.8 13.5 85 180-264 10-94 (95)
43 1x4h_A RNA-binding protein 28; 99.9 4.5E-22 1.6E-26 147.9 12.9 91 181-271 11-107 (111)
44 2cph_A RNA binding motif prote 99.9 3.6E-22 1.2E-26 147.5 12.1 94 179-272 9-104 (107)
45 1wi8_A EIF-4B, eukaryotic tran 99.9 5.3E-22 1.8E-26 146.0 12.7 89 182-272 12-101 (104)
46 3mdf_A Peptidyl-prolyl CIS-tra 99.9 3.6E-22 1.2E-26 141.3 11.1 81 183-263 5-85 (85)
47 2i2y_A Fusion protein consists 99.9 4.2E-22 1.4E-26 156.2 12.5 134 119-266 9-149 (150)
48 2do4_A Squamous cell carcinoma 99.9 9E-22 3.1E-26 143.6 13.3 85 182-267 14-98 (100)
49 2dnh_A Bruno-like 5, RNA bindi 99.9 8.5E-22 2.9E-26 145.0 13.3 88 182-270 12-102 (105)
50 2cpf_A RNA binding motif prote 99.9 4.9E-22 1.7E-26 144.5 11.8 88 184-271 4-94 (98)
51 2x1f_A MRNA 3'-END-processing 99.9 4.6E-22 1.6E-26 144.1 11.6 84 184-267 1-84 (96)
52 1rk8_A CG8781-PA, CG8781-PA pr 99.9 4.6E-22 1.6E-26 158.5 12.6 87 181-267 68-154 (165)
53 2d9p_A Polyadenylate-binding p 99.9 7.2E-22 2.5E-26 145.0 12.5 88 182-271 12-99 (103)
54 2dgp_A Bruno-like 4, RNA bindi 99.9 3.3E-22 1.1E-26 147.5 10.4 92 181-272 9-103 (106)
55 1p27_B RNA-binding protein 8A; 99.9 4.7E-22 1.6E-26 146.7 11.2 86 182-267 20-105 (106)
56 1oo0_B CG8781-PA, drosophila Y 99.9 5.6E-22 1.9E-26 147.3 11.7 87 181-267 22-108 (110)
57 2e5h_A Zinc finger CCHC-type a 99.9 8.8E-22 3E-26 142.0 11.9 84 180-263 11-94 (94)
58 2cpe_A RNA-binding protein EWS 99.9 9.1E-22 3.1E-26 146.9 12.1 91 181-271 11-109 (113)
59 1u6f_A Tcubp1, RNA-binding pro 99.9 1.9E-21 6.6E-26 150.4 14.2 90 180-269 37-126 (139)
60 3p5t_L Cleavage and polyadenyl 99.9 8.4E-23 2.9E-27 146.3 5.9 83 186-268 2-86 (90)
61 2div_A TRNA selenocysteine ass 99.9 6.5E-22 2.2E-26 144.1 10.6 86 183-268 7-97 (99)
62 2cqi_A Nucleolysin TIAR; RNA r 99.9 3.4E-21 1.2E-25 141.3 14.6 89 180-270 10-98 (103)
63 2cqd_A RNA-binding region cont 99.9 1.9E-21 6.5E-26 145.8 13.4 88 179-267 11-98 (116)
64 2la6_A RNA-binding protein FUS 99.9 9.4E-22 3.2E-26 143.3 11.2 84 180-263 8-99 (99)
65 2fy1_A RNA-binding motif prote 99.9 7E-22 2.4E-26 148.3 10.6 84 183-267 5-88 (116)
66 2jrs_A RNA-binding protein 39; 99.9 1.4E-21 4.6E-26 144.9 11.7 85 182-266 23-107 (108)
67 2do0_A HnRNP M, heterogeneous 99.9 5.7E-21 2E-25 142.7 15.1 85 181-266 11-95 (114)
68 2cq3_A RNA-binding protein 9; 99.9 5.8E-21 2E-25 140.1 14.9 90 179-270 9-98 (103)
69 2cqg_A TDP-43, TAR DNA-binding 99.9 5.6E-21 1.9E-25 140.2 14.7 89 181-271 11-99 (103)
70 2dgx_A KIAA0430 protein; RRM d 99.9 2.1E-21 7.1E-26 140.8 12.1 84 183-269 7-94 (96)
71 2jwn_A Embryonic polyadenylate 99.9 1.4E-21 5E-26 148.2 11.8 91 183-274 34-124 (124)
72 3ns6_A Eukaryotic translation 99.9 2.2E-22 7.6E-27 147.0 7.0 83 184-266 5-94 (100)
73 4a8x_A RNA-binding protein wit 99.9 1.5E-21 5.1E-26 138.9 10.8 83 184-266 3-86 (88)
74 2dh8_A DAZ-associated protein 99.9 1.6E-21 5.6E-26 143.5 11.3 90 181-271 12-101 (105)
75 2dgv_A HnRNP M, heterogeneous 99.9 2.2E-21 7.5E-26 139.3 11.2 85 183-269 6-90 (92)
76 3ucg_A Polyadenylate-binding p 99.9 2.3E-21 7.7E-26 138.3 11.2 82 184-266 5-86 (89)
77 2dhg_A TRNA selenocysteine ass 99.9 1.4E-21 4.7E-26 143.6 10.3 86 182-268 6-93 (104)
78 2ywk_A Putative RNA-binding pr 99.9 2.9E-21 9.9E-26 139.5 11.8 83 181-264 12-94 (95)
79 2khc_A Testis-specific RNP-typ 99.9 4.5E-21 1.5E-25 144.2 13.2 84 180-263 35-118 (118)
80 1x4b_A Heterogeneous nuclear r 99.9 2.7E-21 9.2E-26 145.0 11.8 90 182-272 24-113 (116)
81 1x4a_A Splicing factor, argini 99.9 9.8E-21 3.3E-25 140.3 14.4 90 180-272 17-106 (109)
82 3ex7_B RNA-binding protein 8A; 99.9 1.3E-21 4.6E-26 148.8 9.7 87 181-267 18-104 (126)
83 3ulh_A THO complex subunit 4; 99.9 6.7E-21 2.3E-25 140.7 12.7 83 181-264 25-107 (107)
84 3s7r_A Heterogeneous nuclear r 99.9 6E-21 2.1E-25 135.6 12.0 80 182-262 8-87 (87)
85 2cqp_A RNA-binding protein 12; 99.9 2.7E-21 9.4E-26 140.5 10.3 84 183-266 13-96 (98)
86 2cpi_A CCR4-NOT transcription 99.9 4.3E-21 1.5E-25 142.8 11.6 88 182-269 12-105 (111)
87 1p1t_A Cleavage stimulation fa 99.9 1.1E-21 3.8E-26 144.1 8.1 86 182-267 5-90 (104)
88 2fc9_A NCL protein; structure 99.9 7.2E-21 2.5E-25 139.1 12.3 88 181-272 11-98 (101)
89 2kxn_B Transformer-2 protein h 99.9 1.8E-21 6.3E-26 148.7 9.5 86 181-266 42-127 (129)
90 2rs2_A Musashi-1, RNA-binding 99.9 4.1E-21 1.4E-25 142.5 10.8 87 181-268 21-107 (109)
91 2dgw_A Probable RNA-binding pr 99.9 1.2E-20 4.1E-25 135.2 12.9 83 182-267 7-89 (91)
92 1h2v_Z 20 kDa nuclear CAP bind 99.9 1.2E-20 4E-25 148.9 14.0 85 183-267 37-121 (156)
93 2fc8_A NCL protein; structure 99.9 1E-20 3.5E-25 138.5 12.7 91 179-272 9-99 (102)
94 2cq4_A RNA binding motif prote 99.8 1E-21 3.4E-26 146.9 7.3 85 181-266 21-105 (114)
95 3n9u_C Cleavage and polyadenyl 99.8 5.3E-21 1.8E-25 150.8 11.6 82 184-265 54-137 (156)
96 1sjq_A Polypyrimidine tract-bi 99.8 4.1E-21 1.4E-25 140.5 10.0 79 183-267 14-94 (105)
97 1s79_A Lupus LA protein; RRM, 99.8 2.3E-21 7.9E-26 142.3 8.4 80 183-264 9-88 (103)
98 2m2b_A RNA-binding protein 10; 99.8 1.3E-21 4.3E-26 150.1 7.2 86 181-267 19-110 (131)
99 1x4d_A Matrin 3; structural ge 99.8 5E-21 1.7E-25 139.8 9.8 83 183-271 13-98 (102)
100 2ek1_A RNA-binding protein 12; 99.8 3.1E-21 1.1E-25 139.3 8.4 82 183-264 13-94 (95)
101 2kt5_A RNA and export factor-b 99.8 5.8E-20 2E-24 139.3 15.7 87 181-268 31-117 (124)
102 2err_A Ataxin-2-binding protei 99.8 6.1E-21 2.1E-25 141.6 10.0 86 179-266 23-108 (109)
103 2j76_E EIF-4B, EIF4B, eukaryot 99.8 1.3E-21 4.3E-26 143.0 6.0 86 180-267 14-100 (100)
104 1x4c_A Splicing factor, argini 99.8 3.3E-20 1.1E-24 137.3 13.4 79 182-267 12-95 (108)
105 3r27_A HnRNP L, heterogeneous 99.8 9.9E-21 3.4E-25 137.1 10.3 79 182-266 18-98 (100)
106 2cq1_A PTB-like protein L; RRM 99.8 3.3E-20 1.1E-24 135.5 13.0 81 182-268 12-94 (101)
107 1x4e_A RNA binding motif, sing 99.8 1.2E-21 4.1E-26 138.6 4.7 81 183-263 3-83 (85)
108 2mss_A Protein (musashi1); RNA 99.8 2.3E-21 7.7E-26 133.9 5.9 75 187-262 1-75 (75)
109 2dis_A Unnamed protein product 99.8 8.9E-21 3E-25 140.5 9.5 84 184-267 7-94 (109)
110 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.8 2.6E-20 8.8E-25 144.0 12.4 84 179-262 57-140 (140)
111 1wez_A HnRNP H', FTP-3, hetero 99.8 1.2E-20 4.1E-25 138.3 9.9 87 182-271 12-98 (102)
112 2nlw_A Eukaryotic translation 99.8 1.2E-20 4E-25 139.0 9.6 84 183-268 13-103 (105)
113 2wbr_A GW182, gawky, LD47780P; 99.8 1.8E-20 6.3E-25 131.3 10.0 74 184-263 6-79 (89)
114 2dnq_A RNA-binding protein 4B; 99.8 3.1E-20 1.1E-24 132.8 11.3 82 183-272 6-87 (90)
115 2jvr_A Nucleolar protein 3; RN 99.8 1.2E-20 4E-25 140.1 8.9 82 183-268 26-108 (111)
116 1wg5_A Heterogeneous nuclear r 99.8 2.8E-20 9.5E-25 136.8 10.8 84 182-267 12-96 (104)
117 2ki2_A SS-DNA binding protein 99.8 1.5E-21 5E-26 139.7 3.7 82 186-268 2-83 (90)
118 1x5o_A RNA binding motif, sing 99.8 4.2E-20 1.4E-24 138.0 11.9 83 182-265 22-112 (114)
119 1wex_A Hypothetical protein (r 99.8 2.3E-20 7.7E-25 137.1 10.1 82 181-268 11-94 (104)
120 2cpx_A Hypothetical protein FL 99.8 8.8E-21 3E-25 141.9 8.0 89 183-271 23-111 (115)
121 2cpd_A Apobec-1 stimulating pr 99.8 1.3E-19 4.4E-24 131.9 14.0 85 180-272 10-96 (99)
122 1x4g_A Nucleolysin TIAR; struc 99.8 4.6E-20 1.6E-24 136.7 11.7 85 182-272 22-106 (109)
123 2a3j_A U1 small nuclear ribonu 99.8 2E-20 6.9E-25 142.3 9.7 82 182-266 26-111 (127)
124 2ad9_A Polypyrimidine tract-bi 99.8 3.1E-20 1.1E-24 139.1 10.4 81 182-268 28-110 (119)
125 2dgt_A RNA-binding protein 30; 99.8 1E-19 3.5E-24 130.6 12.8 84 181-272 6-89 (92)
126 2cpy_A RNA-binding protein 12; 99.8 1.6E-20 5.5E-25 140.4 8.8 84 181-266 11-95 (114)
127 1uaw_A Mouse-musashi-1; RNP-ty 99.8 5.5E-21 1.9E-25 132.5 5.4 76 186-262 1-76 (77)
128 1wf1_A RNA-binding protein RAL 99.8 1.1E-19 3.7E-24 134.9 12.4 83 183-273 25-108 (110)
129 2ytc_A PRE-mRNA-splicing facto 99.8 8.4E-20 2.9E-24 129.0 11.2 79 179-263 6-85 (85)
130 2jvo_A Nucleolar protein 3; nu 99.8 5.3E-20 1.8E-24 136.2 10.2 81 180-268 26-106 (108)
131 2xnq_A Nuclear polyadenylated 99.8 1.2E-19 4E-24 131.7 11.8 79 180-266 17-96 (97)
132 1nu4_A U1A RNA binding domain; 99.8 2.6E-20 8.9E-25 135.0 8.2 83 182-267 5-91 (97)
133 1fj7_A Nucleolin RBD1, protein 99.8 4E-21 1.4E-25 140.4 3.9 84 183-268 15-98 (101)
134 1why_A Hypothetical protein ri 99.8 8.5E-20 2.9E-24 132.4 10.9 80 182-267 14-95 (97)
135 2lcw_A RNA-binding protein FUS 99.7 7.9E-22 2.7E-26 148.0 0.0 89 183-271 5-101 (116)
136 2dnp_A RNA-binding protein 14; 99.8 1.5E-19 5E-24 129.3 11.8 81 182-270 6-86 (90)
137 2hvz_A Splicing factor, argini 99.8 2.2E-20 7.7E-25 136.4 7.6 78 186-268 1-78 (101)
138 2e5j_A Methenyltetrahydrofolat 99.8 5.4E-20 1.8E-24 133.5 9.4 81 182-267 16-96 (97)
139 2db1_A Heterogeneous nuclear r 99.8 5.6E-20 1.9E-24 138.3 9.8 82 182-265 14-98 (118)
140 2cpj_A Non-POU domain-containi 99.8 7.7E-20 2.6E-24 133.1 10.3 84 182-271 12-95 (99)
141 2dnn_A RNA-binding protein 12; 99.8 7E-20 2.4E-24 135.6 10.0 82 181-265 12-93 (109)
142 1fjc_A Nucleolin RBD2, protein 99.8 6.7E-20 2.3E-24 132.6 9.6 82 182-268 13-94 (96)
143 2cqh_A IGF-II mRNA-binding pro 99.8 6.7E-20 2.3E-24 131.8 9.1 83 183-272 6-90 (93)
144 1wel_A RNA-binding protein 12; 99.8 2.8E-20 9.5E-25 141.2 7.3 83 182-265 22-104 (124)
145 2dgu_A Heterogeneous nuclear r 99.8 2.7E-19 9.2E-24 131.2 12.2 77 183-267 9-85 (103)
146 2hgl_A HNRPF protein, heteroge 99.8 3.4E-20 1.2E-24 142.6 7.7 83 181-265 40-125 (136)
147 4f02_A Polyadenylate-binding p 99.8 1.9E-19 6.5E-24 149.1 12.8 84 183-266 13-96 (213)
148 3pgw_S U1-70K; protein-RNA com 99.8 7.1E-21 2.4E-25 173.6 4.4 84 183-266 100-183 (437)
149 2xs2_A Deleted in azoospermia- 99.8 6.3E-20 2.1E-24 134.3 8.6 83 182-267 6-88 (102)
150 2la4_A Nuclear and cytoplasmic 99.8 1E-19 3.6E-24 132.8 9.1 77 183-265 25-101 (101)
151 1x4f_A Matrin 3; structural ge 99.8 9.2E-20 3.2E-24 135.1 8.8 82 182-269 22-106 (112)
152 2krb_A Eukaryotic translation 99.8 2.4E-20 8.2E-25 130.8 5.4 74 185-260 1-81 (81)
153 2kvi_A Nuclear polyadenylated 99.8 5.9E-20 2E-24 133.0 7.6 81 182-270 7-88 (96)
154 1x5p_A Negative elongation fac 99.8 7.1E-19 2.4E-23 127.5 13.0 81 183-271 13-93 (97)
155 2hgn_A Heterogeneous nuclear r 99.8 9.1E-21 3.1E-25 146.3 3.1 83 182-267 43-125 (139)
156 1iqt_A AUF1, heterogeneous nuc 99.8 1.6E-20 5.6E-25 129.5 4.1 75 187-262 1-75 (75)
157 3q2s_C Cleavage and polyadenyl 99.8 6.9E-20 2.4E-24 153.4 8.5 81 184-264 67-149 (229)
158 1fxl_A Paraneoplastic encephal 99.8 7.6E-19 2.6E-23 139.0 12.9 83 185-267 2-84 (167)
159 3lqv_A PRE-mRNA branch site pr 99.8 1.4E-19 4.7E-24 135.4 7.8 81 183-266 6-86 (115)
160 1b7f_A Protein (SXL-lethal pro 99.8 6.3E-19 2.2E-23 139.8 11.8 85 184-268 2-86 (168)
161 3egn_A RNA-binding protein 40; 99.8 8.9E-20 3.1E-24 141.7 6.5 84 183-266 43-131 (143)
162 2lmi_A GRSF-1, G-rich sequence 99.8 4.6E-20 1.6E-24 136.3 4.4 82 182-265 8-92 (107)
163 2e44_A Insulin-like growth fac 99.8 5.1E-19 1.8E-23 127.9 9.6 80 183-266 13-93 (96)
164 1whx_A Hypothetical protein ri 99.8 3.5E-19 1.2E-23 132.5 8.8 78 183-266 8-85 (111)
165 2j8a_A Histone-lysine N-methyl 99.8 3.6E-19 1.2E-23 133.0 8.8 79 186-264 3-95 (136)
166 2cq2_A Hypothetical protein LO 99.8 6.2E-19 2.1E-23 130.8 9.5 78 183-266 23-107 (114)
167 2e5g_A U6 snRNA-specific termi 99.8 1.4E-18 4.7E-23 125.2 10.9 78 184-267 7-84 (94)
168 2f3j_A RNA and export factor b 99.8 5.3E-19 1.8E-23 142.3 9.1 85 181-266 84-168 (177)
169 2dha_A FLJ20171 protein; RRM d 99.8 3.4E-19 1.2E-23 134.6 6.6 80 184-265 22-105 (123)
170 1l3k_A Heterogeneous nuclear r 99.8 2.8E-18 9.4E-23 139.6 12.5 87 180-267 8-94 (196)
171 1sjr_A Polypyrimidine tract-bi 99.8 1.3E-18 4.3E-23 136.9 9.9 79 184-266 45-125 (164)
172 1wg1_A KIAA1579 protein, homol 99.8 1.2E-18 4E-23 124.1 8.9 76 184-266 4-79 (88)
173 3zzy_A Polypyrimidine tract-bi 99.8 4E-18 1.4E-22 129.3 11.9 78 184-266 27-107 (130)
174 2diu_A KIAA0430 protein; struc 99.8 1.4E-18 4.7E-23 122.9 8.4 73 185-267 8-86 (96)
175 3d2w_A TAR DNA-binding protein 99.8 2E-18 6.8E-23 123.2 9.4 77 182-267 8-86 (89)
176 3md3_A Nuclear and cytoplasmic 99.8 3.4E-18 1.2E-22 135.1 11.5 81 186-267 1-81 (166)
177 2pe8_A Splicing factor 45; RRM 99.8 5.2E-18 1.8E-22 124.6 11.6 83 183-265 6-94 (105)
178 3beg_B Splicing factor, argini 99.8 9.6E-19 3.3E-23 130.9 7.7 77 183-266 14-95 (115)
179 2hgm_A HNRPF protein, heteroge 99.8 6.4E-19 2.2E-23 133.5 6.8 80 183-265 40-121 (126)
180 1wf0_A TDP-43, TAR DNA-binding 99.8 1.1E-18 3.7E-23 124.2 6.5 82 184-272 4-85 (88)
181 2e5i_A Heterogeneous nuclear r 99.7 2.2E-17 7.5E-22 124.6 12.9 76 185-266 25-103 (124)
182 2bz2_A Negative elongation fac 99.7 4.5E-18 1.5E-22 128.4 8.5 80 183-270 37-116 (121)
183 4f25_A Polyadenylate-binding p 99.7 7.9E-19 2.7E-23 131.4 3.7 109 63-201 3-113 (115)
184 2dnl_A Cytoplasmic polyadenyla 99.7 3.6E-18 1.2E-22 127.5 7.3 77 184-263 7-86 (114)
185 3tyt_A Heterogeneous nuclear r 99.7 1.2E-17 4.2E-22 137.5 11.1 77 184-265 3-80 (205)
186 2hzc_A Splicing factor U2AF 65 99.7 2.4E-17 8E-22 116.8 9.6 72 183-261 4-86 (87)
187 2qfj_A FBP-interacting repress 99.7 1.1E-17 3.9E-22 138.0 9.0 83 184-266 27-109 (216)
188 2voo_A Lupus LA protein; RNA-b 99.7 3E-17 1E-21 133.8 11.0 80 184-265 108-187 (193)
189 2dit_A HIV TAT specific factor 99.7 1.3E-16 4.5E-21 118.6 12.9 86 181-270 11-107 (112)
190 3nmr_A Cugbp ELAV-like family 99.7 3.7E-17 1.3E-21 130.3 10.4 84 184-267 2-90 (175)
191 2cjk_A Nuclear polyadenylated 99.7 2.2E-17 7.5E-22 130.8 8.7 80 184-265 2-81 (167)
192 3u1l_A PRE-mRNA-splicing facto 99.7 2.6E-17 8.9E-22 137.6 8.3 80 182-267 131-231 (240)
193 3pgw_A U1-A; protein-RNA compl 99.7 9.6E-17 3.3E-21 138.1 11.9 83 181-266 5-91 (282)
194 3v4m_A Splicing factor U2AF 65 99.7 1.5E-16 5E-21 116.9 9.6 82 184-265 4-97 (105)
195 1jmt_A Splicing factor U2AF 35 99.7 3.6E-17 1.2E-21 120.0 5.4 72 190-262 20-103 (104)
196 1fje_B Nucleolin RBD12, protei 99.7 2.8E-17 9.5E-22 131.4 4.3 85 181-267 9-93 (175)
197 2adc_A Polypyrimidine tract-bi 99.7 2.4E-16 8.4E-21 131.8 9.6 79 182-265 31-110 (229)
198 3ue2_A Poly(U)-binding-splicin 99.7 6.3E-16 2.2E-20 115.7 10.4 81 184-264 19-108 (118)
199 1qm9_A Polypyrimidine tract-bi 99.6 3.4E-16 1.1E-20 127.7 7.0 76 185-265 3-79 (198)
200 3sde_A Paraspeckle component 1 99.6 1.9E-15 6.4E-20 128.8 11.4 78 182-265 19-96 (261)
201 2d9o_A DNAJ (HSP40) homolog, s 99.6 8.3E-15 2.8E-19 106.3 11.3 77 185-268 10-93 (100)
202 2g4b_A Splicing factor U2AF 65 99.6 6E-15 2.1E-19 117.2 10.9 77 184-267 3-90 (172)
203 2yh0_A Splicing factor U2AF 65 99.6 1.1E-14 3.8E-19 118.3 10.3 75 184-265 3-88 (198)
204 1s79_A Lupus LA protein; RRM, 99.5 7.1E-15 2.4E-19 107.5 6.1 66 63-145 9-74 (103)
205 3tht_A Alkylated DNA repair pr 99.5 1.6E-14 5.6E-19 126.8 9.3 77 182-264 15-98 (345)
206 3s6e_A RNA-binding protein 39; 99.5 4.2E-14 1.4E-18 105.1 9.7 78 183-264 5-92 (114)
207 3lqv_A PRE-mRNA branch site pr 99.5 3E-15 1E-19 111.6 3.1 104 62-211 5-109 (115)
208 2lxi_A RNA-binding protein 10; 99.5 1.4E-14 5E-19 103.4 5.7 60 65-141 1-62 (91)
209 4fxv_A ELAV-like protein 1; RN 99.5 1.2E-14 4E-19 105.6 4.8 66 64-146 18-85 (99)
210 2hvz_A Splicing factor, argini 99.5 2.1E-14 7.2E-19 104.4 5.4 59 66-145 1-60 (101)
211 2hgl_A HNRPF protein, heteroge 99.5 2.4E-14 8.2E-19 109.8 5.3 68 61-145 40-110 (136)
212 2db1_A Heterogeneous nuclear r 99.5 3.4E-14 1.2E-18 106.5 5.7 67 62-145 14-83 (118)
213 1wez_A HnRNP H', FTP-3, hetero 99.5 2E-14 6.7E-19 105.0 4.1 67 61-145 11-77 (102)
214 2wbr_A GW182, gawky, LD47780P; 99.5 1.9E-13 6.4E-18 95.7 8.5 60 64-145 6-66 (89)
215 1wg5_A Heterogeneous nuclear r 99.5 4.3E-14 1.5E-18 103.5 5.5 67 62-145 12-79 (104)
216 2cpy_A RNA-binding protein 12; 99.4 8.2E-14 2.8E-18 103.7 5.8 66 63-145 13-79 (114)
217 2lmi_A GRSF-1, G-rich sequence 99.4 7.3E-14 2.5E-18 102.8 5.4 68 61-145 7-77 (107)
218 2div_A TRNA selenocysteine ass 99.4 2.3E-13 7.8E-18 98.5 7.9 68 62-146 6-76 (99)
219 2krb_A Eukaryotic translation 99.4 6E-14 2.1E-18 97.8 4.6 64 65-146 1-71 (81)
220 2mss_A Protein (musashi1); RNA 99.4 9.7E-14 3.3E-18 95.2 5.4 61 68-145 2-63 (75)
221 2hgn_A Heterogeneous nuclear r 99.4 3.7E-14 1.3E-18 109.1 3.2 67 61-145 42-108 (139)
222 2dnn_A RNA-binding protein 12; 99.4 8.5E-14 2.9E-18 102.7 5.0 65 64-146 15-79 (109)
223 2dgp_A Bruno-like 4, RNA bindi 99.4 2.3E-13 7.7E-18 99.7 7.1 68 61-145 9-78 (106)
224 2fy1_A RNA-binding motif prote 99.4 2E-13 7E-18 101.9 7.0 65 64-145 6-71 (116)
225 3s8s_A Histone-lysine N-methyl 99.4 6.9E-14 2.4E-18 103.4 4.2 65 64-145 5-71 (110)
226 2do4_A Squamous cell carcinoma 99.4 1.2E-13 4.2E-18 100.1 5.5 67 62-145 14-81 (100)
227 2dha_A FLJ20171 protein; RRM d 99.4 1.9E-13 6.5E-18 103.0 6.7 65 64-145 22-90 (123)
228 2dhg_A TRNA selenocysteine ass 99.4 5.8E-13 2E-17 97.2 8.9 67 63-146 7-75 (104)
229 2dnh_A Bruno-like 5, RNA bindi 99.4 1.5E-13 5.1E-18 100.5 5.7 67 63-146 13-80 (105)
230 1wel_A RNA-binding protein 12; 99.4 1.9E-13 6.5E-18 103.2 6.3 67 62-145 22-89 (124)
231 2dgs_A DAZ-associated protein 99.4 1E-13 3.6E-18 100.3 4.6 67 62-145 7-74 (99)
232 1whw_A Hypothetical protein ri 99.4 2E-13 6.7E-18 98.8 5.8 66 63-145 6-73 (99)
233 3s7r_A Heterogeneous nuclear r 99.4 1.1E-13 3.6E-18 97.8 4.2 66 63-145 9-75 (87)
234 1x5t_A Splicing factor 3B subu 99.4 2.4E-13 8.3E-18 97.7 6.1 66 64-146 4-72 (96)
235 2la6_A RNA-binding protein FUS 99.4 2.1E-13 7.1E-18 98.8 5.6 68 61-145 9-86 (99)
236 2lkz_A RNA-binding protein 5; 99.4 1.1E-13 3.7E-18 99.6 3.9 64 64-144 8-75 (95)
237 3p5t_L Cleavage and polyadenyl 99.4 9.7E-14 3.3E-18 98.8 3.6 62 67-145 3-68 (90)
238 1sjq_A Polypyrimidine tract-bi 99.4 4.1E-13 1.4E-17 97.9 6.9 62 60-143 11-73 (105)
239 1iqt_A AUF1, heterogeneous nuc 99.4 2.7E-13 9.3E-18 92.8 5.6 61 67-144 1-62 (75)
240 2dgo_A Cytotoxic granule-assoc 99.4 1.3E-12 4.5E-17 97.1 9.7 68 61-145 11-80 (115)
241 2ywk_A Putative RNA-binding pr 99.4 1.4E-13 4.9E-18 98.7 4.3 69 61-146 12-81 (95)
242 2m2b_A RNA-binding protein 10; 99.4 8.6E-13 3E-17 100.6 8.9 65 63-145 21-89 (131)
243 1x5s_A Cold-inducible RNA-bind 99.4 5.2E-13 1.8E-17 97.1 7.2 68 61-145 8-77 (102)
244 1x5u_A Splicing factor 3B subu 99.4 3.6E-13 1.2E-17 98.5 6.2 67 62-145 12-80 (105)
245 3bs9_A Nucleolysin TIA-1 isofo 99.4 1.9E-13 6.4E-18 96.4 4.3 66 63-145 4-71 (87)
246 2hgm_A HNRPF protein, heteroge 99.4 1.3E-13 4.4E-18 104.2 3.7 67 61-144 38-105 (126)
247 2dh8_A DAZ-associated protein 99.4 3.2E-13 1.1E-17 98.8 5.6 68 61-145 12-80 (105)
248 2dng_A Eukaryotic translation 99.4 3.9E-13 1.3E-17 98.0 6.0 68 61-146 11-79 (103)
249 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.4 7.5E-13 2.6E-17 101.7 7.9 111 15-145 16-128 (140)
250 2khc_A Testis-specific RNP-typ 99.4 4.3E-13 1.5E-17 100.2 6.3 69 61-146 36-106 (118)
251 2dgw_A Probable RNA-binding pr 99.4 5.7E-13 2E-17 94.8 6.6 68 61-146 6-73 (91)
252 2dnz_A Probable RNA-binding pr 99.4 3E-13 1E-17 97.0 5.1 66 63-145 3-70 (95)
253 1fj7_A Nucleolin RBD1, protein 99.4 3.2E-13 1.1E-17 98.1 5.2 66 64-146 16-81 (101)
254 3mdf_A Peptidyl-prolyl CIS-tra 99.4 2.2E-13 7.4E-18 95.7 4.2 67 63-146 5-73 (85)
255 2cqb_A Peptidyl-prolyl CIS-tra 99.4 3E-13 1E-17 98.3 5.1 68 61-145 8-77 (102)
256 2do0_A HnRNP M, heterogeneous 99.4 7.3E-13 2.5E-17 98.3 7.2 66 63-145 13-79 (114)
257 2cqp_A RNA-binding protein 12; 99.4 5.6E-13 1.9E-17 96.2 6.4 67 62-145 12-80 (98)
258 2j76_E EIF-4B, EIF4B, eukaryot 99.4 8.6E-14 2.9E-18 101.1 1.9 68 61-146 15-84 (100)
259 3md1_A Nuclear and cytoplasmic 99.4 2.4E-13 8.1E-18 95.0 4.1 65 65-146 1-67 (83)
260 2cpz_A CUG triplet repeat RNA- 99.4 7E-13 2.4E-17 98.6 6.8 66 63-145 23-90 (115)
261 3ucg_A Polyadenylate-binding p 99.4 3.3E-13 1.1E-17 95.5 4.8 66 64-146 5-71 (89)
262 2cqc_A Arginine/serine-rich sp 99.4 4.5E-13 1.5E-17 96.0 5.5 68 61-145 11-80 (95)
263 3ns6_A Eukaryotic translation 99.4 1.3E-13 4.4E-18 100.2 2.7 66 64-146 5-78 (100)
264 2e5h_A Zinc finger CCHC-type a 99.4 4E-13 1.4E-17 96.2 5.2 69 61-146 12-82 (94)
265 2cqi_A Nucleolysin TIAR; RNA r 99.4 1.2E-12 4.1E-17 95.4 7.8 67 61-145 11-78 (103)
266 2cq4_A RNA binding motif prote 99.4 1.6E-13 5.6E-18 101.9 3.1 67 63-146 23-90 (114)
267 2rs2_A Musashi-1, RNA-binding 99.4 2.2E-13 7.6E-18 100.5 3.8 67 61-144 21-88 (109)
268 1wi8_A EIF-4B, eukaryotic tran 99.4 4.2E-13 1.4E-17 98.0 5.2 67 62-146 12-80 (104)
269 3ulh_A THO complex subunit 4; 99.4 4.9E-13 1.7E-17 98.1 5.5 67 63-146 27-94 (107)
270 2dgv_A HnRNP M, heterogeneous 99.4 5.7E-13 2E-17 94.9 5.7 65 63-145 6-71 (92)
271 2cq0_A Eukaryotic translation 99.4 4.2E-13 1.4E-17 97.8 5.0 68 62-146 12-81 (103)
272 2dnr_A Synaptojanin-1; RRM dom 99.4 3E-12 1E-16 89.6 9.0 75 183-266 5-87 (91)
273 2d9p_A Polyadenylate-binding p 99.4 3.8E-13 1.3E-17 98.0 4.4 66 62-145 12-78 (103)
274 2cqd_A RNA-binding region cont 99.4 1.4E-12 4.8E-17 97.1 7.6 67 61-144 13-81 (116)
275 2jrs_A RNA-binding protein 39; 99.4 6E-13 2.1E-17 98.0 5.4 68 61-145 22-91 (108)
276 2ek1_A RNA-binding protein 12; 99.4 3.9E-13 1.3E-17 96.4 4.0 67 63-146 13-81 (95)
277 2dgx_A KIAA0430 protein; RRM d 99.4 9.4E-13 3.2E-17 94.8 6.0 66 61-145 5-75 (96)
278 3d2w_A TAR DNA-binding protein 99.3 4.2E-13 1.4E-17 95.3 3.9 60 61-141 7-66 (89)
279 2dnm_A SRP46 splicing factor; 99.3 3.4E-13 1.2E-17 98.3 3.4 66 63-145 11-78 (103)
280 2cq3_A RNA-binding protein 9; 99.3 1.3E-12 4.3E-17 95.3 6.3 67 61-145 11-78 (103)
281 1u6f_A Tcubp1, RNA-binding pro 99.3 1.6E-12 5.6E-17 99.9 7.2 68 61-145 38-107 (139)
282 2cqg_A TDP-43, TAR DNA-binding 99.3 1.3E-12 4.5E-17 95.1 6.3 63 62-141 12-75 (103)
283 1p27_B RNA-binding protein 8A; 99.3 7.5E-13 2.6E-17 96.9 5.0 66 63-145 21-88 (106)
284 2xs2_A Deleted in azoospermia- 99.3 3.2E-13 1.1E-17 98.2 2.9 62 63-141 7-68 (102)
285 2jvr_A Nucleolar protein 3; RN 99.3 1.4E-12 4.8E-17 96.4 6.3 66 60-145 23-90 (111)
286 2kt5_A RNA and export factor-b 99.3 1.3E-12 4.4E-17 98.5 6.3 68 61-145 31-99 (124)
287 2x1f_A MRNA 3'-END-processing 99.3 6.3E-13 2.2E-17 95.6 4.2 64 65-145 2-67 (96)
288 2jwn_A Embryonic polyadenylate 99.3 8.6E-13 2.9E-17 99.5 5.1 66 64-146 35-101 (124)
289 1oo0_B CG8781-PA, drosophila Y 99.3 8.8E-13 3E-17 97.3 5.0 68 62-146 23-92 (110)
290 2cpf_A RNA binding motif prote 99.3 1E-12 3.5E-17 94.8 5.1 66 64-146 4-74 (98)
291 1x4b_A Heterogeneous nuclear r 99.3 1.1E-12 3.8E-17 97.7 5.5 65 64-145 26-91 (116)
292 2lea_A Serine/arginine-rich sp 99.3 7.2E-13 2.4E-17 101.6 4.5 67 62-145 44-112 (135)
293 2nlw_A Eukaryotic translation 99.3 5E-13 1.7E-17 97.9 3.5 64 65-146 15-85 (105)
294 2cpe_A RNA-binding protein EWS 99.3 1.8E-12 6E-17 96.1 6.4 67 63-146 13-89 (113)
295 2kxn_B Transformer-2 protein h 99.3 1.1E-12 3.6E-17 99.9 5.2 68 61-145 42-111 (129)
296 3n9u_C Cleavage and polyadenyl 99.3 1.3E-12 4.5E-17 102.6 6.0 66 64-146 54-123 (156)
297 1x4e_A RNA binding motif, sing 99.3 7.6E-13 2.6E-17 92.9 4.1 66 63-145 3-70 (85)
298 2cph_A RNA binding motif prote 99.3 1.9E-12 6.5E-17 94.9 6.4 68 61-145 11-82 (107)
299 1x5o_A RNA binding motif, sing 99.3 1.1E-12 3.9E-17 97.3 5.2 67 63-146 23-90 (114)
300 1x4h_A RNA-binding protein 28; 99.3 2E-12 6.7E-17 95.4 6.4 65 62-143 12-78 (111)
301 1x4a_A Splicing factor, argini 99.3 2.3E-12 7.9E-17 94.8 6.4 65 62-145 19-84 (109)
302 3ex7_B RNA-binding protein 8A; 99.3 1.1E-12 3.8E-17 99.1 4.7 66 63-145 20-87 (126)
303 1x4f_A Matrin 3; structural ge 99.3 2.2E-12 7.7E-17 95.2 6.1 58 62-141 22-80 (112)
304 2a3j_A U1 small nuclear ribonu 99.3 3.3E-12 1.1E-16 96.8 7.0 63 64-145 28-95 (127)
305 2dis_A Unnamed protein product 99.3 7.7E-12 2.6E-16 91.9 8.9 64 63-143 6-73 (109)
306 1p1t_A Cleavage stimulation fa 99.3 1.3E-12 4.3E-17 95.3 4.4 65 64-145 7-73 (104)
307 2err_A Ataxin-2-binding protei 99.3 1.1E-12 3.9E-17 96.7 4.0 68 61-146 25-93 (109)
308 1uaw_A Mouse-musashi-1; RNP-ty 99.3 1E-12 3.5E-17 90.4 3.5 59 67-142 2-61 (77)
309 3r27_A HnRNP L, heterogeneous 99.3 3.3E-12 1.1E-16 92.2 5.9 57 63-141 19-75 (100)
310 2ad9_A Polypyrimidine tract-bi 99.3 3E-12 1E-16 95.5 5.5 57 63-141 29-85 (119)
311 4a8x_A RNA-binding protein wit 99.3 1.4E-12 4.8E-17 92.0 3.5 66 64-146 3-71 (88)
312 2cpx_A Hypothetical protein FL 99.3 7.1E-12 2.4E-16 93.0 7.4 66 63-145 23-90 (115)
313 2fc9_A NCL protein; structure 99.3 2.2E-12 7.5E-17 93.6 4.4 65 61-145 11-76 (101)
314 2kn4_A Immunoglobulin G-bindin 99.3 6.1E-12 2.1E-16 98.8 7.2 67 62-145 67-135 (158)
315 2cq2_A Hypothetical protein LO 99.3 6.5E-12 2.2E-16 92.9 6.9 61 64-146 24-87 (114)
316 2cq1_A PTB-like protein L; RRM 99.3 2.8E-12 9.7E-17 93.2 4.9 57 63-141 13-69 (101)
317 3q2s_C Cleavage and polyadenyl 99.3 2.2E-12 7.4E-17 107.7 4.7 65 64-145 67-135 (229)
318 1owx_A Lupus LA protein, SS-B, 99.3 8.4E-12 2.9E-16 93.0 7.3 76 182-263 15-94 (121)
319 2ki2_A SS-DNA binding protein 99.3 2E-12 6.9E-17 91.7 3.8 62 66-145 2-65 (90)
320 2e5j_A Methenyltetrahydrofolat 99.3 1.8E-11 6.1E-16 88.1 8.2 64 61-145 15-79 (97)
321 2f3j_A RNA and export factor b 99.3 6.9E-12 2.4E-16 100.5 6.6 66 63-145 86-152 (177)
322 2jvo_A Nucleolar protein 3; nu 99.3 6.2E-12 2.1E-16 92.6 5.7 62 61-146 27-89 (108)
323 1h2v_Z 20 kDa nuclear CAP bind 99.2 6.3E-12 2.2E-16 98.6 5.9 66 63-145 37-104 (156)
324 2dnl_A Cytoplasmic polyadenyla 99.2 3.1E-12 1.1E-16 95.0 3.7 60 64-141 7-70 (114)
325 1wex_A Hypothetical protein (r 99.2 9.7E-12 3.3E-16 90.8 6.1 57 63-141 13-69 (104)
326 1why_A Hypothetical protein ri 99.2 7.8E-12 2.7E-16 90.0 5.3 63 62-146 14-77 (97)
327 1x4c_A Splicing factor, argini 99.2 1.1E-11 3.7E-16 91.1 6.1 61 63-146 13-74 (108)
328 2dnq_A RNA-binding protein 4B; 99.2 9.8E-12 3.4E-16 88.2 5.3 60 62-145 5-65 (90)
329 2cpi_A CCR4-NOT transcription 99.2 3.2E-12 1.1E-16 94.5 2.8 69 61-146 11-87 (111)
330 2ytc_A PRE-mRNA-splicing facto 99.2 1.6E-11 5.3E-16 86.0 6.2 61 63-145 10-72 (85)
331 2la4_A Nuclear and cytoplasmic 99.2 1.7E-11 5.7E-16 88.9 6.2 62 63-146 25-87 (101)
332 1rk8_A CG8781-PA, CG8781-PA pr 99.2 9.5E-12 3.3E-16 98.5 5.3 66 63-145 70-137 (165)
333 1wf0_A TDP-43, TAR DNA-binding 99.2 4.4E-12 1.5E-16 89.6 2.6 58 64-142 4-61 (88)
334 2e5g_A U6 snRNA-specific termi 99.2 2.2E-11 7.5E-16 87.1 6.3 63 63-146 6-68 (94)
335 2dnp_A RNA-binding protein 14; 99.2 2.1E-11 7.3E-16 86.4 6.1 60 62-145 6-66 (90)
336 2dgt_A RNA-binding protein 30; 99.2 2E-11 6.7E-16 87.0 5.8 61 61-145 6-67 (92)
337 2lcw_A RNA-binding protein FUS 98.8 1.6E-12 5.3E-17 96.9 0.0 65 64-145 6-80 (116)
338 2dgu_A Heterogeneous nuclear r 99.2 1.9E-11 6.6E-16 88.9 5.9 59 63-145 9-68 (103)
339 2xnq_A Nuclear polyadenylated 99.2 1.1E-11 3.8E-16 89.3 4.5 62 61-146 18-81 (97)
340 2hzc_A Splicing factor U2AF 65 99.2 2.8E-11 9.6E-16 85.1 6.4 65 64-146 5-76 (87)
341 2cqh_A IGF-II mRNA-binding pro 99.2 1.7E-11 5.6E-16 87.5 5.3 59 63-144 6-66 (93)
342 3egn_A RNA-binding protein 40; 99.2 1.1E-11 3.7E-16 95.8 4.6 66 64-146 44-116 (143)
343 1nu4_A U1A RNA binding domain; 99.2 3.4E-12 1.2E-16 91.8 1.6 65 63-146 6-75 (97)
344 3dxb_A Thioredoxin N-terminall 99.2 3.5E-11 1.2E-15 99.8 8.0 68 197-264 141-212 (222)
345 1x4d_A Matrin 3; structural ge 99.2 7.8E-12 2.7E-16 90.9 3.4 56 64-141 14-70 (102)
346 1x4g_A Nucleolysin TIAR; struc 99.2 2.3E-11 7.9E-16 89.4 5.9 61 63-145 23-84 (109)
347 2cpj_A Non-POU domain-containi 99.2 1.6E-11 5.3E-16 88.7 4.9 62 62-145 12-74 (99)
348 1wf1_A RNA-binding protein RAL 99.2 2.4E-11 8.1E-16 89.5 5.9 61 62-146 24-86 (110)
349 2i2y_A Fusion protein consists 99.2 2.5E-11 8.5E-16 94.5 6.1 64 61-145 69-133 (150)
350 2voo_A Lupus LA protein; RNA-b 99.2 1.1E-11 3.6E-16 100.9 4.0 64 64-144 108-171 (193)
351 2kvi_A Nuclear polyadenylated 99.2 2.1E-11 7.3E-16 87.6 4.8 59 63-145 8-68 (96)
352 1ufw_A Synaptojanin 2; RNP dom 99.2 5.5E-11 1.9E-15 83.6 6.5 74 182-264 12-94 (95)
353 1fjc_A Nucleolin RBD2, protein 99.2 7.3E-12 2.5E-16 89.9 1.9 62 63-145 14-76 (96)
354 2fc8_A NCL protein; structure 99.1 3.3E-11 1.1E-15 87.4 5.2 65 61-145 11-77 (102)
355 3pgw_S U1-70K; protein-RNA com 99.1 7E-11 2.4E-15 107.6 8.0 65 64-145 101-167 (437)
356 1sjr_A Polypyrimidine tract-bi 99.1 1.4E-10 4.8E-15 91.0 7.7 62 65-146 46-108 (164)
357 3beg_B Splicing factor, argini 99.1 1.6E-11 5.4E-16 91.3 1.8 60 64-146 15-75 (115)
358 1whx_A Hypothetical protein ri 99.1 2.6E-11 8.9E-16 89.6 2.7 60 64-145 9-69 (111)
359 2cpd_A Apobec-1 stimulating pr 99.1 1.5E-10 5.3E-15 83.4 6.5 61 63-145 13-74 (99)
360 1x5p_A Negative elongation fac 99.1 2.3E-10 7.7E-15 82.2 6.0 59 63-145 13-72 (97)
361 2j8a_A Histone-lysine N-methyl 99.0 8.3E-11 2.9E-15 87.9 3.5 50 66-132 3-57 (136)
362 1wg1_A KIAA1579 protein, homol 99.0 1.1E-10 3.6E-15 82.5 3.3 59 64-145 4-63 (88)
363 2e44_A Insulin-like growth fac 99.0 4.6E-10 1.6E-14 80.3 6.7 64 62-145 12-77 (96)
364 2bz2_A Negative elongation fac 99.0 3.9E-10 1.3E-14 84.6 4.9 61 61-145 35-96 (121)
365 2e5i_A Heterogeneous nuclear r 99.0 1E-09 3.5E-14 82.4 7.2 57 68-146 28-86 (124)
366 2diu_A KIAA0430 protein; struc 99.0 5.7E-10 1.9E-14 78.8 4.8 57 64-145 7-69 (96)
367 3tht_A Alkylated DNA repair pr 99.0 4.2E-10 1.4E-14 98.8 5.1 64 62-147 15-81 (345)
368 3zzy_A Polypyrimidine tract-bi 98.9 5.3E-10 1.8E-14 84.5 4.5 59 67-146 30-90 (130)
369 3u1l_A PRE-mRNA-splicing facto 98.9 5.6E-10 1.9E-14 93.2 3.8 63 62-146 131-203 (240)
370 2pe8_A Splicing factor 45; RRM 98.9 8.3E-10 2.8E-14 80.6 4.3 71 64-146 7-80 (105)
371 2d9o_A DNAJ (HSP40) homolog, s 98.9 3.1E-09 1.1E-13 76.8 5.6 46 87-141 27-72 (100)
372 1jmt_A Splicing factor U2AF 35 98.8 3.5E-10 1.2E-14 82.5 0.4 59 88-146 26-92 (104)
373 2dit_A HIV TAT specific factor 98.8 4.9E-09 1.7E-13 77.3 5.7 76 59-146 9-88 (112)
374 2l9w_A U4/U6 snRNA-associated- 98.7 8.6E-08 2.9E-12 68.7 9.4 71 185-261 21-96 (117)
375 3v4m_A Splicing factor U2AF 65 98.7 1.4E-08 4.6E-13 74.1 3.6 52 90-146 28-83 (105)
376 3ue2_A Poly(U)-binding-splicin 98.5 5.1E-08 1.8E-12 72.5 2.5 71 64-146 19-95 (118)
377 3s6e_A RNA-binding protein 39; 98.2 4.6E-07 1.6E-11 66.9 2.1 48 91-146 31-79 (114)
378 1wey_A Calcipressin 1; structu 98.1 6.9E-06 2.4E-10 58.6 7.3 76 185-266 5-85 (104)
379 1owx_A Lupus LA protein, SS-B, 97.9 3.9E-06 1.3E-10 62.2 2.4 59 62-142 15-76 (121)
380 1whv_A Poly(A)-specific ribonu 97.8 9.4E-05 3.2E-09 51.9 7.5 54 185-247 16-69 (100)
381 2dnr_A Synaptojanin-1; RRM dom 97.8 4E-05 1.4E-09 53.4 5.5 42 92-145 30-71 (91)
382 1uw4_A UPF3X; nonsense mediate 97.7 0.00047 1.6E-08 48.2 10.0 79 186-264 2-87 (91)
383 2dhx_A Poly (ADP-ribose) polym 97.7 0.00061 2.1E-08 48.4 10.4 71 185-264 8-83 (104)
384 3dxb_A Thioredoxin N-terminall 97.6 3.3E-05 1.1E-09 63.5 2.9 53 89-146 141-199 (222)
385 1wwh_A Nucleoporin 35, nucleop 97.5 0.001 3.5E-08 48.7 10.2 74 182-263 21-95 (119)
386 3ctr_A Poly(A)-specific ribonu 97.5 0.00015 5E-09 51.1 5.3 55 185-248 6-60 (101)
387 1ufw_A Synaptojanin 2; RNP dom 97.4 7.6E-05 2.6E-09 52.3 3.0 42 92-145 39-80 (95)
388 2dhx_A Poly (ADP-ribose) polym 96.8 0.0021 7.2E-08 45.6 5.5 58 66-142 9-66 (104)
389 2l08_A Regulator of nonsense t 96.7 0.0037 1.3E-07 44.0 5.8 79 185-263 9-94 (97)
390 3p3d_A Nucleoporin 53; structu 96.6 0.0031 1E-07 46.8 5.2 78 185-264 7-98 (132)
391 3pq1_A Poly(A) RNA polymerase; 96.4 0.0016 5.4E-08 59.1 3.3 56 185-246 53-108 (464)
392 1wwh_A Nucleoporin 35, nucleop 95.6 0.033 1.1E-06 40.7 6.4 61 74-147 23-83 (119)
393 2l9w_A U4/U6 snRNA-associated- 95.2 0.033 1.1E-06 39.9 5.2 54 88-146 32-86 (117)
394 3p3d_A Nucleoporin 53; structu 94.3 0.068 2.3E-06 39.6 5.2 69 71-147 3-86 (132)
395 3d45_A Poly(A)-specific ribonu 93.2 0.29 9.8E-06 45.0 8.4 55 185-248 440-494 (507)
396 1whv_A Poly(A)-specific ribonu 90.8 0.91 3.1E-05 31.7 6.6 55 63-141 13-67 (100)
397 3pq1_A Poly(A) RNA polymerase; 90.0 0.13 4.5E-06 46.5 2.3 57 65-143 53-109 (464)
398 2g0c_A ATP-dependent RNA helic 72.4 4.9 0.00017 26.2 4.1 68 187-263 2-75 (76)
399 3cnq_P Subtilisin BPN'; unclea 71.1 5.2 0.00018 26.3 4.0 34 8-41 40-73 (80)
400 3u7d_B Protein HEG homolog 1; 69.1 1.3 4.6E-05 22.0 0.5 11 2-12 5-15 (26)
401 3ctr_A Poly(A)-specific ribonu 59.6 4.1 0.00014 28.5 1.7 42 88-141 16-57 (101)
402 1wey_A Calcipressin 1; structu 55.3 14 0.00049 25.9 3.9 44 92-145 25-69 (104)
403 2w2n_P Proprotein convertase s 50.0 9.9 0.00034 27.1 2.5 31 10-40 80-110 (114)
404 4e8u_A Putative uncharacterize 41.0 66 0.0023 24.7 6.0 49 187-238 14-73 (172)
405 2z30_B TK-subtilisin; thermoco 37.9 45 0.0016 20.8 4.0 33 8-40 29-61 (65)
406 2qtw_A Proprotein convertase s 37.6 22 0.00076 25.7 2.8 31 10-40 90-120 (124)
407 3mfb_A Uncharacterized protein 36.1 65 0.0022 24.3 5.2 37 197-233 3-42 (157)
408 1v5i_B POIA1, IA-1=serine prot 34.7 34 0.0012 22.1 3.1 32 9-40 39-72 (76)
409 2hiq_A Hypothetical protein YD 30.3 1.3E+02 0.0045 21.3 5.7 65 78-143 11-76 (113)
410 3d45_A Poly(A)-specific ribonu 24.8 1.3E+02 0.0045 27.3 6.2 41 88-140 450-490 (507)
411 4eyt_A Telomerase associated p 24.4 1.7E+02 0.0057 19.8 7.8 55 185-247 12-66 (129)
412 4bby_A Alkyldihydroxyacetoneph 22.7 99 0.0034 29.0 5.1 54 193-247 351-408 (658)
413 2e5q_A PHD finger protein 19; 21.3 22 0.00077 22.2 0.2 14 120-133 32-45 (63)
414 3cam_A Cold-shock domain famil 21.1 37 0.0013 21.5 1.3 13 120-132 10-22 (67)
415 3ts2_A Protein LIN-28 homolog 20.8 12 0.0004 28.1 -1.4 28 200-235 2-29 (148)
416 1c9o_A CSPB, cold-shock protei 20.4 41 0.0014 21.1 1.4 12 121-132 11-22 (66)
No 1
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=100.00 E-value=3.3e-34 Score=234.44 Aligned_cols=174 Identities=20% Similarity=0.287 Sum_probs=136.4
Q ss_pred CCceeeeecCCCcceeEEecCCCCCCCCHHHHHHHHHHHHHhhhCCcccceEEEe-cCCCCCCeEEeeeCCHHHHHHHHC
Q 024012 63 IGTTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIY-HVSWQSNFGFCCELDDECAQELTG 141 (274)
Q Consensus 63 ~~s~~lf~vgnl~~~~~~~~~p~~~~~t~~~L~~~F~~~l~~~~G~v~~v~i~~~-~~g~srgfgFV~f~~~e~a~~a~~ 141 (274)
..+++|| |||||. ++|+++|+++|.++ |.|.+|+++.+ .+|.++|||||+|.+.++|++|++
T Consensus 11 ~~~~~l~-V~nLp~-----------~~te~~l~~~F~~~-----G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~ 73 (196)
T 1l3k_A 11 EQLRKLF-IGGLSF-----------ETTDESLRSHFEQW-----GTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN 73 (196)
T ss_dssp GGGGEEE-EESCCT-----------TCCHHHHHHHHGGG-----SCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHH
T ss_pred CCCCEEE-EeCCCC-----------CCCHHHHHHHHHhC-----CCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHh
Confidence 4577899 999999 69999999999977 99999998885 578899999999999999999988
Q ss_pred CCCcee-ecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEec
Q 024012 142 VPGVLS-VQPDENFGSENKDYGGNNLQNSMVPSDSSEASPTQIKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMD 220 (274)
Q Consensus 142 ~~g~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~d 220 (274)
.++... .+........ +.............++|||+|||+++|+++|+++|++||.|..+.++++
T Consensus 74 ~~~~~~~g~~l~v~~~~--------------~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~ 139 (196)
T 1l3k_A 74 ARPHKVDGRVVEPKRAV--------------SREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTD 139 (196)
T ss_dssp TCSCEETTEECEEEECC--------------C-----------CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEEC
T ss_pred cCCCEECCEEeeeeccc--------------CcccccccccCCCcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeec
Confidence 765421 1110000000 0000011122334689999999999999999999999999999999999
Q ss_pred CCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEeEEEeecCCCCC
Q 024012 221 KISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVDVAKTTPKY 268 (274)
Q Consensus 221 ~~~g~~rG~aFV~F~s~~~A~~Ai~~l~g~~l~G~~l~V~~a~~~~~~ 268 (274)
+.+|.++|||||+|.+.++|.+|+.. +|..++|+.|.|.+|.++...
T Consensus 140 ~~~g~~~g~afV~F~~~~~A~~A~~~-~~~~~~G~~i~v~~a~~k~~~ 186 (196)
T 1l3k_A 140 RGSGKKRGFAFVTFDDHDSVDKIVIQ-KYHTVNGHNCEVRKALSKQEM 186 (196)
T ss_dssp TTTCCEEEEEEEEESSHHHHHHHHHC-SCCEETTEECEEEECC-----
T ss_pred CCCCCccceEEEEECCHHHHHHHHHh-CCcEECCEEEEEEecCChhHh
Confidence 98999999999999999999999976 899999999999999987643
No 2
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.2e-34 Score=228.02 Aligned_cols=165 Identities=21% Similarity=0.322 Sum_probs=137.9
Q ss_pred eeeeecCCCcceeEEecCCCCCCCCHHHHHHHHHHHHHhhhCCcccceEEEecCCCCCCeEEeeeCCHHHHHHHH-CCCC
Q 024012 66 TLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIYHVSWQSNFGFCCELDDECAQELT-GVPG 144 (274)
Q Consensus 66 ~~lf~vgnl~~~~~~~~~p~~~~~t~~~L~~~F~~~l~~~~G~v~~v~i~~~~~g~srgfgFV~f~~~e~a~~a~-~~~g 144 (274)
++|| |+|||. ++|+++|+++|.++ |.|.+++++.+..|+++|||||+|.+.++|++|+ .++|
T Consensus 1 R~l~-V~nlp~-----------~~t~~~l~~~f~~~-----G~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~ 63 (166)
T 3md3_A 1 RVLY-VGNLDK-----------AITEDILKQYFQVG-----GPIANIKIMIDKNNKNVNYAFVEYHQSHDANIALQTLNG 63 (166)
T ss_dssp CEEE-EEEEET-----------TCCHHHHHHHHGGG-----SCEEEEEEECCCC-CCEEEEEEEESSHHHHHHHHHHHTT
T ss_pred CEEE-ECCCCC-----------cCCHHHHHHHHHhc-----CCeEEEEEEECCCCCCCCEEEEEeCCHHHHHHHHHHcCC
Confidence 4688 999999 79999999999977 9999999998888999999999999999998777 6777
Q ss_pred ceeecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCC
Q 024012 145 VLSVQPDENFGSENKDYGGNNLQNSMVPSDSSEASPTQIKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISK 224 (274)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~d~~~g 224 (274)
.... +..+....... .......+..+|||+|||..+++++|+++|++||.|.++.+++++.+|
T Consensus 64 ~~~~--------------g~~i~v~~~~~---~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~ 126 (166)
T 3md3_A 64 KQIE--------------NNIVKINWAFQ---SQQSSSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTG 126 (166)
T ss_dssp CEET--------------TEECEEEECCC---CCCCCCTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTC
T ss_pred CccC--------------CCeeEEEEcCC---CCCCCCCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCC
Confidence 5321 00010000000 011233457899999999999999999999999999999999998899
Q ss_pred CcceEEEEEeCCHHHHHHHHHHhCCceeCCEEeEEEeecC
Q 024012 225 RSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVDVAKT 264 (274)
Q Consensus 225 ~~rG~aFV~F~s~~~A~~Ai~~l~g~~l~G~~l~V~~a~~ 264 (274)
.++|||||+|.+.++|.+|+..|||..++|++|+|+||++
T Consensus 127 ~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~~ 166 (166)
T 3md3_A 127 SSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAK 166 (166)
T ss_dssp CEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESCC
T ss_pred CcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEecCC
Confidence 9999999999999999999999999999999999999974
No 3
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=100.00 E-value=1e-34 Score=241.48 Aligned_cols=169 Identities=21% Similarity=0.345 Sum_probs=135.2
Q ss_pred CCCCceeeeecCCCcceeEEecCCCCCCCCHHHHHHHHHHHHHhhhCCcccceEEEe-cCCCCCCeEEeeeCCHHHHHHH
Q 024012 61 SQIGTTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIY-HVSWQSNFGFCCELDDECAQEL 139 (274)
Q Consensus 61 ~~~~s~~lf~vgnl~~~~~~~~~p~~~~~t~~~L~~~F~~~l~~~~G~v~~v~i~~~-~~g~srgfgFV~f~~~e~a~~a 139 (274)
+...+++|| |||||+ ++|+++|+++|.++ |.|.+|+|+.+ .+|+++|||||+|.+.++|++|
T Consensus 11 p~~p~~tlf-VgnLp~-----------~~te~~L~~~F~~~-----G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~A 73 (213)
T 4f02_A 11 PSYPMASLY-VGDLHP-----------DVTEAMLYEKFSPA-----GPILSIRVCRDMITRRSLGYAYVNFQQPADAERA 73 (213)
T ss_dssp ----CCEEE-EESCCT-----------TCCHHHHHHHHGGG-----SCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHH
T ss_pred CCCCCcEEE-EeCCCC-----------CCCHHHHHHHHHhh-----CCEEEEEEecccCCCCccccccceeCCHHHHHHH
Confidence 334567899 999999 69999999999977 99999999884 5799999999999999999776
Q ss_pred H-CCCCceeecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEE
Q 024012 140 T-GVPGVLSVQPDENFGSENKDYGGNNLQNSMVPSDSSEASPTQIKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKII 218 (274)
Q Consensus 140 ~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~te~~L~~~F~~fG~i~~v~i~ 218 (274)
+ .++|.... +..+..... ............+|||+|||+.+|+++|+++|++||.|++++|+
T Consensus 74 i~~~~~~~~~--------------g~~i~~~~~---~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~ 136 (213)
T 4f02_A 74 LDTMNFDVIK--------------GKPVRIMWS---QRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVV 136 (213)
T ss_dssp HHHHTTCEET--------------TEECEEEEC---CCCTHHHHHCTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEE
T ss_pred HHHhhhhhcC--------------Ccccccccc---cccccccccccccceECCcccccHHHHHHHHHhhcCCeEEEEee
Confidence 6 45664321 000000000 00001112235789999999999999999999999999999999
Q ss_pred ecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEeEEEeecCC
Q 024012 219 MDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVDVAKTT 265 (274)
Q Consensus 219 ~d~~~g~~rG~aFV~F~s~~~A~~Ai~~l~g~~l~G~~l~V~~a~~~ 265 (274)
+|. +.++|||||+|.+.++|.+|++.|||..|+|++|+|++|+++
T Consensus 137 ~d~--~~~~g~~fV~f~~~~~a~~Ai~~lng~~~~g~~i~V~~a~~~ 181 (213)
T 4f02_A 137 CDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 181 (213)
T ss_dssp EET--TEEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCH
T ss_pred ccC--CCCceEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEcCCC
Confidence 985 568999999999999999999999999999999999999875
No 4
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=100.00 E-value=1.3e-33 Score=231.18 Aligned_cols=183 Identities=20% Similarity=0.307 Sum_probs=140.6
Q ss_pred CceeeeecCCCcceeEEecCCCCCCCCHHHHHHHHHHHHHhhhCCcccc------eEEEecCCCCCCeEEeeeCCHHHHH
Q 024012 64 GTTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDA------QMCIYHVSWQSNFGFCCELDDECAQ 137 (274)
Q Consensus 64 ~s~~lf~vgnl~~~~~~~~~p~~~~~t~~~L~~~F~~~l~~~~G~v~~v------~i~~~~~g~srgfgFV~f~~~e~a~ 137 (274)
.+++|| |+|||. ++|+++|+++|.++ |.|..+ .+....++.++|||||+|.+.++|+
T Consensus 3 ~~~~l~-V~nLp~-----------~~te~~l~~~F~~~-----g~i~g~~~~~~~~v~~~~~~~~~g~afV~F~~~~~A~ 65 (198)
T 2yh0_A 3 MARRLY-VGNIPF-----------GITEEAMMDFFNAQ-----MRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETT 65 (198)
T ss_dssp -CCEEE-EESCCT-----------TCCHHHHHHHHHHH-----HHHHTCCSSSSCSEEEEEEETTTTEEEEEESCSHHHH
T ss_pred ceeEEE-EcCCCC-----------CCCHHHHHHHHHHH-----HhhcccccCCCCceEEeEecCCCCEEEEEeCCHHHHH
Confidence 357899 999999 69999999999988 655443 3444566888999999999999998
Q ss_pred HHHCCCCce------eecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccEEEEcCCCCCCCHHHHHHHHhccCC
Q 024012 138 ELTGVPGVL------SVQPDENFGSENKDYGGNNLQNSMVPSDSSEASPTQIKTKKLFVTGLSFYTSEKTLRAAFEGFGE 211 (274)
Q Consensus 138 ~a~~~~g~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~te~~L~~~F~~fG~ 211 (274)
+|+.++|.. .+......... ... ....................++|||+|||+.+++++|+++|++||.
T Consensus 66 ~Al~l~g~~~~g~~i~v~~~~~~~~~----~~~-~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~ 140 (198)
T 2yh0_A 66 QAMAFDGIIFQGQSLKIRRPHDYQPL----PGM-SENPSVYVPGVVSTVVPDSAHKLFIGGLPNYLNDDQVKELLTSFGP 140 (198)
T ss_dssp HHGGGTTEEETTEEEEEECCCCCCCC----CCS-SSCSSCCCTTSSCCCSSCCCCEEEEECCCTTCCHHHHHHHHHTBSC
T ss_pred HHHHhcCCEEcCceEEEeCCCCCCCC----CCC-cCCCcCCCCCCccCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHcCC
Confidence 888888753 22211111000 000 0000000001111223356789999999999999999999999999
Q ss_pred eEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEeEEEeecCCCCC
Q 024012 212 LVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVDVAKTTPKY 268 (274)
Q Consensus 212 i~~v~i~~d~~~g~~rG~aFV~F~s~~~A~~Ai~~l~g~~l~G~~l~V~~a~~~~~~ 268 (274)
|.++.+.+++.+|.++|||||+|.+.++|.+|++.|||..++|++|+|+||+++.+.
T Consensus 141 v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~ 197 (198)
T 2yh0_A 141 LKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRASVGAKN 197 (198)
T ss_dssp EEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEETTEECEEEESCCCCCC
T ss_pred ccEEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCCCCC
Confidence 999999999889999999999999999999999999999999999999999987653
No 5
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=100.00 E-value=2.6e-33 Score=224.49 Aligned_cols=164 Identities=20% Similarity=0.317 Sum_probs=133.0
Q ss_pred CceeeeecCCCcceeEEecCCCCCCCCHHHHHHHHHHHHHhhhCCcccc------eEEEecCCCCCCeEEeeeCCHHHHH
Q 024012 64 GTTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDA------QMCIYHVSWQSNFGFCCELDDECAQ 137 (274)
Q Consensus 64 ~s~~lf~vgnl~~~~~~~~~p~~~~~t~~~L~~~F~~~l~~~~G~v~~v------~i~~~~~g~srgfgFV~f~~~e~a~ 137 (274)
.+++|| |||||. ++|+++|+++|.++ |.+..+ .+....++.++|||||+|.++++|+
T Consensus 3 ~~~~l~-V~nLp~-----------~~t~~~l~~~F~~~-----g~~~g~~~~~~~~v~~~~~~~~~g~afV~f~~~~~A~ 65 (172)
T 2g4b_A 3 SARRLY-VGNIPF-----------GITEEAMMDFFNAQ-----MRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETT 65 (172)
T ss_dssp GGGEEE-EESCCT-----------TCCHHHHHHHHHHH-----HHHTTCCSSSSCSEEEEEEETTTTEEEEEESSHHHHH
T ss_pred cccEEE-EcCCCc-----------ccCHHHHHHHHHHH-----hhhcccccCCCCceeeeEecCCCCEEEEEeCCHHHHH
Confidence 457899 999999 79999999999988 544332 3444456778999999999999998
Q ss_pred HHHCCCCceeecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEE
Q 024012 138 ELTGVPGVLSVQPDENFGSENKDYGGNNLQNSMVPSDSSEASPTQIKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKI 217 (274)
Q Consensus 138 ~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~te~~L~~~F~~fG~i~~v~i 217 (274)
+|+.++|..... ..+.... ..........++|||+|||..+++++|+++|++||.|.++.+
T Consensus 66 ~A~~~~~~~~~g--------------~~i~v~~-----~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i 126 (172)
T 2g4b_A 66 QAMAFDGIIFQG--------------QSLKIRR-----PHDYQPLPGAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNL 126 (172)
T ss_dssp HHGGGTTCEETT--------------EECEEEC-----CSSCCCCTTTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEE
T ss_pred HHHHhCCcEecC--------------ceeeecC-----CcccCCCCCCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEE
Confidence 888888754210 0000000 000111233789999999999999999999999999999999
Q ss_pred EecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEeEEEeec
Q 024012 218 IMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVDVAK 263 (274)
Q Consensus 218 ~~d~~~g~~rG~aFV~F~s~~~A~~Ai~~l~g~~l~G~~l~V~~a~ 263 (274)
++++.+|.++|||||+|.+.++|.+|++.|||..++|++|.|+||.
T Consensus 127 ~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~As 172 (172)
T 2g4b_A 127 VKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRAS 172 (172)
T ss_dssp EECTTTCSEEEEEEEEESSTTHHHHHHHHHTTCEETTEECEEEECC
T ss_pred EecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCEECCeEEEEEeCC
Confidence 9998899999999999999999999999999999999999999983
No 6
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=100.00 E-value=1.3e-34 Score=231.04 Aligned_cols=165 Identities=18% Similarity=0.321 Sum_probs=136.9
Q ss_pred CceeeeecCCCcceeEEecCCCCCCCCHHHHHHHHHHHHHhhhCCcccceEEEe-cCCCCCCeEEeeeCCHHHHHHHHCC
Q 024012 64 GTTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIY-HVSWQSNFGFCCELDDECAQELTGV 142 (274)
Q Consensus 64 ~s~~lf~vgnl~~~~~~~~~p~~~~~t~~~L~~~F~~~l~~~~G~v~~v~i~~~-~~g~srgfgFV~f~~~e~a~~a~~~ 142 (274)
.+++|| |||||. ++|+++|+++|.++ |.|.+++++.+ .+|.++|||||+|.+.++|++|+..
T Consensus 2 ~~~~l~-v~nLp~-----------~~t~~~l~~~F~~~-----G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~ 64 (167)
T 2cjk_A 2 ESCKMF-IGGLNW-----------DTTEDNLREYFGKY-----GTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT 64 (167)
T ss_dssp GGGEEE-ECSCCT-----------TCCHHHHHHHHTTT-----CCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHS
T ss_pred CCcEEE-EeCCCC-----------CCCHHHHHHHHHhC-----CCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhc
Confidence 357899 999999 69999999999977 99999998875 5799999999999999999888763
Q ss_pred CCceeecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCC
Q 024012 143 PGVLSVQPDENFGSENKDYGGNNLQNSMVPSDSSEASPTQIKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKI 222 (274)
Q Consensus 143 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~d~~ 222 (274)
...+. +..+... ............+|||+|||+++++++|+++|++||.|.++++++++.
T Consensus 65 ~~~~~---------------g~~i~v~-----~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~ 124 (167)
T 2cjk_A 65 QHILD---------------GKVIDPK-----RAIPRDEQDKTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKD 124 (167)
T ss_dssp CCEET---------------TEECCCE-----ECCCHHHHHHCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSS
T ss_pred ccccC---------------CeEcccc-----cccchhhccCCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCC
Confidence 11111 1111110 011112223467999999999999999999999999999999999988
Q ss_pred CCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEeEEEeecCCC
Q 024012 223 SKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVDVAKTTP 266 (274)
Q Consensus 223 ~g~~rG~aFV~F~s~~~A~~Ai~~l~g~~l~G~~l~V~~a~~~~ 266 (274)
+|.++|||||+|.+.++|.+|++ ++|..++|++|+|.||++++
T Consensus 125 ~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~V~~a~pk~ 167 (167)
T 2cjk_A 125 TGQSRGFGFVTYDSADAVDRVCQ-NKFIDFKDRKIEIKRAEPRH 167 (167)
T ss_dssp SSTTSEEEEEEESSHHHHHHHHH-CSEECSSSSCEEEEECCCCC
T ss_pred CCccceEEEEEECCHHHHHHHHh-CCCEEeCCeEEEEeecCCCC
Confidence 99999999999999999999996 89999999999999998863
No 7
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=100.00 E-value=1.5e-33 Score=224.45 Aligned_cols=162 Identities=22% Similarity=0.397 Sum_probs=135.6
Q ss_pred ceeeeecCCCcceeEEecCCCCCCCCHHHHHHHHHHHHHhhhCCcccceEEEec-CCCCCCeEEeeeCCHHHHHHHHC-C
Q 024012 65 TTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIYH-VSWQSNFGFCCELDDECAQELTG-V 142 (274)
Q Consensus 65 s~~lf~vgnl~~~~~~~~~p~~~~~t~~~L~~~F~~~l~~~~G~v~~v~i~~~~-~g~srgfgFV~f~~~e~a~~a~~-~ 142 (274)
+++|| |+|||. ++|+++|+++|.++ |.|.+++++.+. +|.++|||||+|.++++|++|++ +
T Consensus 2 ~~~l~-v~nlp~-----------~~~~~~l~~~f~~~-----G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l 64 (167)
T 1fxl_A 2 KTNLI-VNYLPQ-----------NMTQEEFRSLFGSI-----GEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTL 64 (167)
T ss_dssp CSEEE-EESCCT-----------TCCHHHHHHHHHTT-----SCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHH
T ss_pred cceEE-EcCCCC-----------CCCHHHHHHHHHhc-----CCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHc
Confidence 46799 999999 69999999999977 999999998865 89999999999999999987775 6
Q ss_pred CCceeecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCC
Q 024012 143 PGVLSVQPDENFGSENKDYGGNNLQNSMVPSDSSEASPTQIKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKI 222 (274)
Q Consensus 143 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~d~~ 222 (274)
+|.... +..+.... ...........+|||+|||..+++++|+++|++||.|.+++++++..
T Consensus 65 ~~~~~~--------------g~~l~v~~-----~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~ 125 (167)
T 1fxl_A 65 NGLRLQ--------------TKTIKVSY-----ARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQV 125 (167)
T ss_dssp TTCEET--------------TEECEEEE-----CCCCCGGGTTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTT
T ss_pred CCCccC--------------CceEEEEe-----cCCCcccCCCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCC
Confidence 774321 00010000 01112234478899999999999999999999999999999999988
Q ss_pred CCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEE--eEEEee
Q 024012 223 SKRSKGYAFIEYTTEEAASAALKEMNGKIINGWM--IVVDVA 262 (274)
Q Consensus 223 ~g~~rG~aFV~F~s~~~A~~Ai~~l~g~~l~G~~--l~V~~a 262 (274)
+|.++|||||+|.+.++|.+|++.|||..+.|+. |+|+||
T Consensus 126 ~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~i~v~~A 167 (167)
T 1fxl_A 126 TGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFA 167 (167)
T ss_dssp TCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEEEC
T ss_pred CCCccceEEEEeCCHHHHHHHHHHhcCCccCCCccceEEEeC
Confidence 9999999999999999999999999999999964 889886
No 8
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=100.00 E-value=1.7e-33 Score=224.53 Aligned_cols=162 Identities=22% Similarity=0.358 Sum_probs=136.2
Q ss_pred ceeeeecCCCcceeEEecCCCCCCCCHHHHHHHHHHHHHhhhCCcccceEEEe-cCCCCCCeEEeeeCCHHHHHHHHC-C
Q 024012 65 TTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIY-HVSWQSNFGFCCELDDECAQELTG-V 142 (274)
Q Consensus 65 s~~lf~vgnl~~~~~~~~~p~~~~~t~~~L~~~F~~~l~~~~G~v~~v~i~~~-~~g~srgfgFV~f~~~e~a~~a~~-~ 142 (274)
+++|| |+|||. ++|+++|+++|.++ |.|.+++++.+ .+|.++|||||+|.++++|++|++ +
T Consensus 3 ~~~l~-v~nlp~-----------~~~~~~l~~~f~~~-----G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l 65 (168)
T 1b7f_A 3 NTNLI-VNYLPQ-----------DMTDRELYALFRAI-----GPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVL 65 (168)
T ss_dssp CSEEE-EECCCT-----------TCCHHHHHHHHHTT-----SCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHH
T ss_pred ccEEE-EeCCCC-----------CCCHHHHHHHHHhc-----CCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhc
Confidence 56799 999999 69999999999977 99999998875 589999999999999999988875 6
Q ss_pred CCceeecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCC
Q 024012 143 PGVLSVQPDENFGSENKDYGGNNLQNSMVPSDSSEASPTQIKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKI 222 (274)
Q Consensus 143 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~d~~ 222 (274)
+|.... +..+.... ...........+|||+|||..+++++|+++|++||.|..+.+++++.
T Consensus 66 ~~~~~~--------------g~~l~v~~-----~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~ 126 (168)
T 1b7f_A 66 NGITVR--------------NKRLKVSY-----ARPGGESIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKL 126 (168)
T ss_dssp TTCEET--------------TEECEEEE-----CCCCSSTTTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTT
T ss_pred CCCEeC--------------CcEEEEEe-----cCCCcccCCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCC
Confidence 765321 00010000 01112234478999999999999999999999999999999999998
Q ss_pred CCCcceEEEEEeCCHHHHHHHHHHhCCceeCC--EEeEEEee
Q 024012 223 SKRSKGYAFIEYTTEEAASAALKEMNGKIING--WMIVVDVA 262 (274)
Q Consensus 223 ~g~~rG~aFV~F~s~~~A~~Ai~~l~g~~l~G--~~l~V~~a 262 (274)
+|.++|||||+|.+.++|.+|++.|||..+.| ++|+|+||
T Consensus 127 ~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~l~V~~A 168 (168)
T 1b7f_A 127 TGRPRGVAFVRYNKREEAQEAISALNNVIPEGGSQPLSVRLA 168 (168)
T ss_dssp TCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEEEC
T ss_pred CCCcceEEEEEECCHHHHHHHHHHhcCCEecCCCeEEEEEeC
Confidence 99999999999999999999999999999988 99999987
No 9
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=100.00 E-value=2.7e-33 Score=232.39 Aligned_cols=180 Identities=19% Similarity=0.228 Sum_probs=140.8
Q ss_pred CceeeeecCCCcceeEEecCCCCCCCCHHHHHHHHHHHHHhhhCCcccceEEEe-cCCCCCCeEEeeeCCHHHHHHHHC-
Q 024012 64 GTTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIY-HVSWQSNFGFCCELDDECAQELTG- 141 (274)
Q Consensus 64 ~s~~lf~vgnl~~~~~~~~~p~~~~~t~~~L~~~F~~~l~~~~G~v~~v~i~~~-~~g~srgfgFV~f~~~e~a~~a~~- 141 (274)
.+++|| |+|||. ++|+++|+++|.++ |.|.+++++.+ .+|.++|||||+|.+.++|++|++
T Consensus 27 ~~~~l~-V~nLp~-----------~~t~~~l~~~f~~~-----G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~ 89 (216)
T 2qfj_A 27 IMSRVY-VGSIYY-----------ELGEDTIRQAFAPF-----GPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQ 89 (216)
T ss_dssp HHTEEE-EECCCT-----------TCCHHHHHHHHGGG-----SCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHH
T ss_pred cCCEEE-EECCCC-----------CCCHHHHHHHHHhC-----CCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHH
Confidence 456899 999999 69999999999977 99999998875 489999999999999999988876
Q ss_pred CCCcee-ecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEec
Q 024012 142 VPGVLS-VQPDENFGSENKDYGGNNLQNSMVPSDSSEASPTQIKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMD 220 (274)
Q Consensus 142 ~~g~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~d 220 (274)
++|... .+.......... .................++|||+|||..+++++|+++|++||.|.+++++++
T Consensus 90 l~~~~~~g~~l~v~~~~~~---------~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~ 160 (216)
T 2qfj_A 90 MNSVMLGGRNIKVGRPSNI---------GQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARD 160 (216)
T ss_dssp HSSCCCC-CCCEEECCSCC---------GGGHHHHHHHHHHHTTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEEC
T ss_pred ccCCeeCCeeEEEecCCCc---------cccchhhhhhhcccCCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEec
Confidence 676432 111100000000 0000000000011234689999999999999999999999999999999999
Q ss_pred CCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEeEEEeecCCCCCC
Q 024012 221 KISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVDVAKTTPKYS 269 (274)
Q Consensus 221 ~~~g~~rG~aFV~F~s~~~A~~Ai~~l~g~~l~G~~l~V~~a~~~~~~~ 269 (274)
+.+|.++|||||+|.+.++|.+|++.|||..|+|++|+|+||.+++...
T Consensus 161 ~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~V~~a~~~~~~~ 209 (216)
T 2qfj_A 161 PTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKAVTPPMPL 209 (216)
T ss_dssp TTTCCEEEEEEEEESSHHHHHHHHHHHTTCBCSSSBCEEEECSSCSSTT
T ss_pred CCCCCcCceEEEEecCHHHHHHHHHHccCCEeCCcEEEEEEecCCCCCC
Confidence 9899999999999999999999999999999999999999999886433
No 10
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=100.00 E-value=8.3e-33 Score=221.87 Aligned_cols=167 Identities=19% Similarity=0.278 Sum_probs=134.4
Q ss_pred CceeeeecCCCcceeEEecCCCCCCCCHHHHHHHHHHHHHhhhCCcccceEEEecCC---CCCCeEEeeeCCHHHHHHHH
Q 024012 64 GTTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIYHVS---WQSNFGFCCELDDECAQELT 140 (274)
Q Consensus 64 ~s~~lf~vgnl~~~~~~~~~p~~~~~t~~~L~~~F~~~l~~~~G~v~~v~i~~~~~g---~srgfgFV~f~~~e~a~~a~ 140 (274)
.+++|| |+|||. ++|+++|+++|.++ |.|.+++++.+..+ +++|||||+|.+.++|++|+
T Consensus 2 ~~~~l~-V~nLp~-----------~~te~~l~~~F~~~-----G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~ 64 (175)
T 3nmr_A 2 DAIKMF-VGQVPR-----------TWSEKDLRELFEQY-----GAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQ 64 (175)
T ss_dssp CCEEEE-EESCCT-----------TCCHHHHHHHHHTT-----SCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHH
T ss_pred CceEEE-EeCCCC-----------CCCHHHHHHHHHhC-----CCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHH
Confidence 467899 999999 79999999999977 99999999886555 79999999999999997776
Q ss_pred C-CCCceeecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEe
Q 024012 141 G-VPGVLSVQPDENFGSENKDYGGNNLQNSMVPSDSSEASPTQIKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIM 219 (274)
Q Consensus 141 ~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~ 219 (274)
+ ++|....... .......... .........++|||+|||+.+|+++|+++|++||.|.++++++
T Consensus 65 ~~l~~~~~~~~~-----------~~~~~~~~~~----~~~~~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~ 129 (175)
T 3nmr_A 65 NALHNMKVLPGM-----------HHPIQMKPAD----SEKNNAVEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILR 129 (175)
T ss_dssp HHHTTTCCCTTC-----------SSCCEEEECG----GGCCSCGGGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEE
T ss_pred HHhcCcEEccCC-----------ccceEEcccc----ccccccCCCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEE
Confidence 4 6664321000 0000000000 0012233578999999999999999999999999999999999
Q ss_pred cCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeC---CEEeEEEeec
Q 024012 220 DKISKRSKGYAFIEYTTEEAASAALKEMNGKIIN---GWMIVVDVAK 263 (274)
Q Consensus 220 d~~~g~~rG~aFV~F~s~~~A~~Ai~~l~g~~l~---G~~l~V~~a~ 263 (274)
++ +|.++|||||+|.+.++|.+|++.|||..+. |++|.|+||.
T Consensus 130 ~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~V~~ad 175 (175)
T 3nmr_A 130 GP-DGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVVKFAD 175 (175)
T ss_dssp CT-TSCEEEEEEEEESSHHHHHHHHHHHTTSCCCTTCSSCCEEEECC
T ss_pred CC-CCCEEEEEEEEECCHHHHHHHHHHhcCCcccCCCCCCeEEEecC
Confidence 97 6999999999999999999999999998776 4999999984
No 11
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=100.00 E-value=2.1e-32 Score=219.97 Aligned_cols=167 Identities=21% Similarity=0.267 Sum_probs=134.7
Q ss_pred CCCCceeeeecCCCcceeEEecCCCCCCCCHHHHHHHHHHHHHhhhCCcccceEEEecCCCCCCeEEeeeCCHHHHHHHH
Q 024012 61 SQIGTTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIYHVSWQSNFGFCCELDDECAQELT 140 (274)
Q Consensus 61 ~~~~s~~lf~vgnl~~~~~~~~~p~~~~~t~~~L~~~F~~~l~~~~G~v~~v~i~~~~~g~srgfgFV~f~~~e~a~~a~ 140 (274)
.+..+++|| |||||. ++|+++|+++|.++ |.+..+.+....+|.++|||||+|.++++|++|+
T Consensus 9 ~~~~~~~l~-V~nLp~-----------~~t~~~l~~~f~~~-----g~~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~ 71 (175)
T 1fje_B 9 ESTTPFNLF-IGNLNP-----------NKSVAELKVAISEL-----FAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKAL 71 (175)
T ss_dssp SCSSSEEEE-EECCCT-----------TSCHHHHHHHHHHH-----HHHHTCCCCEEEEETTTTEEEEEESSHHHHHHHH
T ss_pred CCCCCcEEE-EeCCCC-----------CCCHHHHHHHHHHh-----CCcceEEEEECCCCccccEEEEEECCHHHHHHHH
Confidence 344678899 999999 69999999999988 7776655666688999999999999999998888
Q ss_pred CCCCceeecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEec
Q 024012 141 GVPGVLSVQPDENFGSENKDYGGNNLQNSMVPSDSSEASPTQIKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMD 220 (274)
Q Consensus 141 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~d 220 (274)
+++|.... +..+....... .........++|||+|||+.+++++|+++|++||.|..+
T Consensus 72 ~l~g~~~~--------------g~~l~v~~~~~---~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~----- 129 (175)
T 1fje_B 72 ELTGLKVF--------------GNEIKLEKPKG---RDSKKVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV----- 129 (175)
T ss_dssp HGGGEEET--------------TEEEEEECCCC---SSCSTTGGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE-----
T ss_pred hcCCCEeC--------------CeEEEEecCCC---ccccccccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe-----
Confidence 88875321 00000000000 011223457899999999999999999999999988766
Q ss_pred CCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEeEEEeecCCC
Q 024012 221 KISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVDVAKTTP 266 (274)
Q Consensus 221 ~~~g~~rG~aFV~F~s~~~A~~Ai~~l~g~~l~G~~l~V~~a~~~~ 266 (274)
..+|.++|||||+|.+.++|.+|++.|||..++|++|+|+||++++
T Consensus 130 ~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~~k~ 175 (175)
T 1fje_B 130 SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGEKG 175 (175)
T ss_dssp CSSSSCCSEEEEECSSHHHHHHHHHHHTEEEETTEEEEEEECSSCC
T ss_pred cCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEecCCCC
Confidence 4488999999999999999999999999999999999999998864
No 12
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.97 E-value=6.7e-31 Score=228.17 Aligned_cols=171 Identities=19% Similarity=0.270 Sum_probs=131.8
Q ss_pred CceeeeecCCCcceeEEecCCCCCCCCHHHHHHHHHHHHHhhhC-CcccceEEEecCCCCCCeEEeeeCCHHHHHHHHC-
Q 024012 64 GTTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLG-NEKDAQMCIYHVSWQSNFGFCCELDDECAQELTG- 141 (274)
Q Consensus 64 ~s~~lf~vgnl~~~~~~~~~p~~~~~t~~~L~~~F~~~l~~~~G-~v~~v~i~~~~~g~srgfgFV~f~~~e~a~~a~~- 141 (274)
.+++|| |+|||. ++|+++|+++|.++ | .|.+++++.+..|.++|||||+|.+.++|.+|+.
T Consensus 116 ~~~~l~-v~nlp~-----------~~t~~~l~~~f~~~-----G~~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~ 178 (292)
T 2ghp_A 116 TECTLW-MTNFPP-----------SYTQRNIRDLLQDI-----NVVALSIRLPSLRFNTSRRFAYIDVTSKEDARYCVEK 178 (292)
T ss_dssp CSCEEE-EECCCT-----------TCCHHHHHHHHHHT-----TCCCCEEECC-------CCEEEEECSSHHHHHHHHHH
T ss_pred CCCEEE-EECCCC-----------CCCHHHHHHHHHHh-----CCCeEEEEEEeCCCCCcceEEEEEECCHHHHHHHHHH
Confidence 467799 999999 69999999999987 9 9999999887779999999999999999988776
Q ss_pred CCCceeecCCCCCCCCCCCCCCCCCCCCCCCCC-CCCC-CCCCccccEEEEcCCCCC-CCHHHHHHHHhccCCeEEEEEE
Q 024012 142 VPGVLSVQPDENFGSENKDYGGNNLQNSMVPSD-SSEA-SPTQIKTKKLFVTGLSFY-TSEKTLRAAFEGFGELVEVKII 218 (274)
Q Consensus 142 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~lfV~nLp~~-~te~~L~~~F~~fG~i~~v~i~ 218 (274)
|+|..... ..+......+. .... .......++|||+|||+. +++++|+++|++||.|..++|+
T Consensus 179 l~g~~~~g--------------~~l~v~~a~~~~~~~~~~~~~~~~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~~v~i~ 244 (292)
T 2ghp_A 179 LNGLKIEG--------------YTLVTKVSNPLEKSKRTDSATLEGREIMIRNLSTELLDENLLRESFEGFGSIEKINIP 244 (292)
T ss_dssp HTTCEETT--------------EECEEEECCCC---------CCTTTEEEEEEECTTTCCHHHHHHHHGGGSCEEEEECC
T ss_pred hCCCEeCC--------------cEEEEEECCCCcccccccccCCCCceEEEECCCcccCCHHHHHHHHhccCCeeEEEEE
Confidence 77753211 00000000000 0000 123345789999999999 9999999999999999999999
Q ss_pred ecCC-CCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEeEEEeecCCC
Q 024012 219 MDKI-SKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVDVAKTTP 266 (274)
Q Consensus 219 ~d~~-~g~~rG~aFV~F~s~~~A~~Ai~~l~g~~l~G~~l~V~~a~~~~ 266 (274)
++.. ||.++|||||+|.+.++|.+|+ .|||..|+|++|.|.||++++
T Consensus 245 ~~~~~tg~~~g~afV~F~~~~~A~~A~-~l~g~~~~g~~i~V~~a~~k~ 292 (292)
T 2ghp_A 245 AGQKEHSFNNCCAFMVFENKDSAERAL-QMNRSLLGNREISVSLADKKP 292 (292)
T ss_dssp SCCC---CCCEEEEEEESSHHHHHHHG-GGTTEEETTEEEEEEECCCCC
T ss_pred ecCCcCCCCceEEEEEeCCHHHHHHHH-HhcCCEECCcEEEEEEecCCC
Confidence 9885 5999999999999999999999 999999999999999999874
No 13
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.97 E-value=6.4e-30 Score=221.15 Aligned_cols=170 Identities=17% Similarity=0.224 Sum_probs=139.3
Q ss_pred CceeeeecCCCcceeEEecCCCCCCCCHHHHHHHHHHHHHhhhCCcccceEEEe-cCCCCCCeEEeeeCCHHHHHHHH-C
Q 024012 64 GTTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIY-HVSWQSNFGFCCELDDECAQELT-G 141 (274)
Q Consensus 64 ~s~~lf~vgnl~~~~~~~~~p~~~~~t~~~L~~~F~~~l~~~~G~v~~v~i~~~-~~g~srgfgFV~f~~~e~a~~a~-~ 141 (274)
...+|| |+|||. ++|+++|+++|.++ |.|.+++++.+ .+|.++|||||+|.+.++|.+|+ .
T Consensus 94 ~~~~l~-v~nlp~-----------~~t~~~l~~~f~~~-----G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~ 156 (284)
T 3smz_A 94 TDALLC-VANLPP-----------SLTQQQFEELVRPF-----GSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSD 156 (284)
T ss_dssp CSCEEE-EESCCT-----------TCCHHHHHHHHGGG-----SCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHH
T ss_pred CCCEEE-EcCCCC-----------cCCHHHHHHHHHhc-----CCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHH
Confidence 346789 999999 69999999999977 99999998875 58999999999999999997777 6
Q ss_pred CCCceeecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccEEEEcCCCCCC-CHHHHHHHHhccCCeEEEEEEec
Q 024012 142 VPGVLSVQPDENFGSENKDYGGNNLQNSMVPSDSSEASPTQIKTKKLFVTGLSFYT-SEKTLRAAFEGFGELVEVKIIMD 220 (274)
Q Consensus 142 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~-te~~L~~~F~~fG~i~~v~i~~d 220 (274)
++|..... ..+....... ..........++|||+|||+.+ ++++|+++|++||.|.+++|+++
T Consensus 157 l~~~~~~g--------------~~i~v~~a~~--~~~~~~~~~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i~~~ 220 (284)
T 3smz_A 157 LLGKPLGP--------------RTLYVHWTDA--GQLTPALLHSRCLCVDRLPPGFNDVDALCRALSAVHSPTFCQLACG 220 (284)
T ss_dssp HTTCEETT--------------EECEEEECCG--GGCCTTTTSCSEEEEECCCTTCCCHHHHHHHTCSSSCCSEEEEEEC
T ss_pred hCCCEeCC--------------cEEEEEECCC--CCCCcccCCccEEEEecCCcccCCHHHHHHHhhCCCCeEEEEEEEC
Confidence 77753210 0000000000 0011223457899999999995 99999999999999999999999
Q ss_pred CCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEeEEEeecCCCC
Q 024012 221 KISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVDVAKTTPK 267 (274)
Q Consensus 221 ~~~g~~rG~aFV~F~s~~~A~~Ai~~l~g~~l~G~~l~V~~a~~~~~ 267 (274)
. +|.++|+|||+|.+.++|.+|+..|||..++|++|+|+||+++..
T Consensus 221 ~-~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~ 266 (284)
T 3smz_A 221 Q-DGQLKGFAVLEYETAEMAEEAQQQADGLSLGGSHLRVSFCAPGPP 266 (284)
T ss_dssp S-SCCEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCSSSC
T ss_pred C-CCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeEEEEEEecCCCc
Confidence 8 899999999999999999999999999999999999999998764
No 14
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.96 E-value=1.3e-29 Score=212.79 Aligned_cols=179 Identities=15% Similarity=0.179 Sum_probs=131.3
Q ss_pred CCCceeeeecCCCcceeEEecCCCCCCCCHHHHHHHHHHHHHhhhCCcccceEEEecCCCCCCeEEeeeCCHHHHHHHHC
Q 024012 62 QIGTTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIYHVSWQSNFGFCCELDDECAQELTG 141 (274)
Q Consensus 62 ~~~s~~lf~vgnl~~~~~~~~~p~~~~~t~~~L~~~F~~~l~~~~G~v~~v~i~~~~~g~srgfgFV~f~~~e~a~~a~~ 141 (274)
...+.+|| |+|||.| ++|+++|+++|.++ |.|.+|+++.+. +|||||+|.+.++|++|++
T Consensus 31 ~~~~~~l~-V~nLp~~----------~~te~~L~~~F~~~-----G~i~~v~i~~~~----~g~afV~F~~~~~A~~Ai~ 90 (229)
T 2adc_A 31 GAGNSVLL-VSNLNPE----------RVTPQSLFILFGVY-----GDVQRVKILFNK----KENALVQMADGNQAQLAMS 90 (229)
T ss_dssp CCCCSEEE-EESCCTT----------TCCHHHHHHHHHHH-----TCEEEEEECCTT----SCCEEEEESCHHHHHHHHH
T ss_pred CCCCCEEE-EeCCCcc----------cCCHHHHHHHHHhC-----CCeEEEEEEECC----CCEEEEEECCHHHHHHHHH
Confidence 35678899 9999995 59999999999988 999999988543 8999999999999988875
Q ss_pred -CCCce------eecCCCCCCCC-CCCC---CCCCC------CCCCCCCCCCCCCCCCccccEEEEcCCCCCCCHHHHHH
Q 024012 142 -VPGVL------SVQPDENFGSE-NKDY---GGNNL------QNSMVPSDSSEASPTQIKTKKLFVTGLSFYTSEKTLRA 204 (274)
Q Consensus 142 -~~g~~------~~~~~~~~~~~-~~~~---~~~~~------~~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~te~~L~~ 204 (274)
++|.. .+......... .+.. ..... .................+.++|||+|||+.+++++|++
T Consensus 91 ~l~g~~~~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~ 170 (229)
T 2adc_A 91 HLNGHKLHGKPIRITLSKHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKV 170 (229)
T ss_dssp HHTTCBCSSSBCEEECCSCCCCCCCCSSSSTTTTEEECTTCSSCCCCSTTSGGGTTCCCSCSEEEEECCCTTCCHHHHHH
T ss_pred HhCCCeECCeEEEEEEecCccccCccccccccccccccccCcccccCCccccccccCCCCCCEEEEeCCCccCCHHHHHH
Confidence 77642 22111110000 0000 00000 00000000000011234578999999999999999999
Q ss_pred HHhccC-CeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeC-CEEeEEEeecCC
Q 024012 205 AFEGFG-ELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIIN-GWMIVVDVAKTT 265 (274)
Q Consensus 205 ~F~~fG-~i~~v~i~~d~~~g~~rG~aFV~F~s~~~A~~Ai~~l~g~~l~-G~~l~V~~a~~~ 265 (274)
+|++|| .|.+++++.+ ++|||||+|.+.++|.+|++.|||..++ |++|+|+||+++
T Consensus 171 ~f~~~G~~i~~v~i~~~-----~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~~a~~~ 228 (229)
T 2adc_A 171 LFSSNGGVVKGFKFFQK-----DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKST 228 (229)
T ss_dssp HHHTTSCCEEEEEECSS-----STTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEECSSC
T ss_pred HHHHcCCCeeEEEEEEC-----CCcEEEEEECCHHHHHHHHHHHCCCccCCCCeEEEEEecCC
Confidence 999999 9999999753 3789999999999999999999999999 999999999875
No 15
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.96 E-value=8.6e-30 Score=221.19 Aligned_cols=163 Identities=13% Similarity=0.174 Sum_probs=130.1
Q ss_pred CCCCceeeeecCCCcceeEEecCCCCCCCCHHHHHHHHHHHHHhhhCCcccceEEEecCCCCCCeEEeeeCCHHHHHHHH
Q 024012 61 SQIGTTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIYHVSWQSNFGFCCELDDECAQELT 140 (274)
Q Consensus 61 ~~~~s~~lf~vgnl~~~~~~~~~p~~~~~t~~~L~~~F~~~l~~~~G~v~~v~i~~~~~g~srgfgFV~f~~~e~a~~a~ 140 (274)
.+..+++|| |+|||. ++|+++|+++|.++ |.|.+|+++.+..+ ++|||||+|.+.++|++|+
T Consensus 37 ~~~~~~~l~-V~nLp~-----------~~t~~~l~~~F~~~-----G~i~~v~i~~~~~~-~~g~afV~f~~~~~A~~A~ 98 (292)
T 2ghp_A 37 RNRELTTVL-VKNLPK-----------SYNQNKVYKYFKHC-----GPIIHVDVADSLKK-NFRFARIEFARYDGALAAI 98 (292)
T ss_dssp -----CEEE-EEEECT-----------TCCHHHHHHHHGGG-----SCEEEEEEEECTTS-SSEEEEEEESSHHHHHHHH
T ss_pred cCCCCCEEE-EeCCCC-----------CCCHHHHHHHHHhc-----CCeEEEEEEECCCC-CcEEEEEEECCHHHHHHHH
Confidence 345678899 999999 79999999999977 99999999986655 5899999999999999999
Q ss_pred CCCCceeecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccEEEEcCCCCCCCHHHHHHHHhccC-CeEEEEEEe
Q 024012 141 GVPGVLSVQPDENFGSENKDYGGNNLQNSMVPSDSSEASPTQIKTKKLFVTGLSFYTSEKTLRAAFEGFG-ELVEVKIIM 219 (274)
Q Consensus 141 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~te~~L~~~F~~fG-~i~~v~i~~ 219 (274)
+++|.... +..+... ....++|||+|||+.+++++|+++|++|| .|.++.+++
T Consensus 99 ~~~~~~~~--------------g~~i~v~------------~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~ 152 (292)
T 2ghp_A 99 TKTHKVVG--------------QNEIIVS------------HLTECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPS 152 (292)
T ss_dssp TTTTCEET--------------TEECEEE------------ECCSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC-
T ss_pred HhCCcEeC--------------CcEEEEE------------ECCCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEe
Confidence 88875431 1101000 01378999999999999999999999999 999999999
Q ss_pred cCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEeEEEeecCCCCC
Q 024012 220 DKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVDVAKTTPKY 268 (274)
Q Consensus 220 d~~~g~~rG~aFV~F~s~~~A~~Ai~~l~g~~l~G~~l~V~~a~~~~~~ 268 (274)
++ .|.++|||||+|.+.++|.+|+..|||..+.|+.|.|.++.++.+.
T Consensus 153 ~~-~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~ 200 (292)
T 2ghp_A 153 LR-FNTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVTKVSNPLEKS 200 (292)
T ss_dssp -------CCEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCCC---
T ss_pred CC-CCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECCCCccc
Confidence 87 4889999999999999999999999999999999999999987643
No 16
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.96 E-value=3.4e-29 Score=216.38 Aligned_cols=177 Identities=19% Similarity=0.253 Sum_probs=129.8
Q ss_pred CCceeeeecCCCcceeEEecCCCCCCCCHHHHH----HHHHHHHHhhhCCcccceEEEecCCCCCCeEEeeeCCHHHHHH
Q 024012 63 IGTTLLFPLGTTKHWLVRMDKPGVGVVTKAQMV----DRYAQILTKVLGNEKDAQMCIYHVSWQSNFGFCCELDDECAQE 138 (274)
Q Consensus 63 ~~s~~lf~vgnl~~~~~~~~~p~~~~~t~~~L~----~~F~~~l~~~~G~v~~v~i~~~~~g~srgfgFV~f~~~e~a~~ 138 (274)
..+++|| |+|||. ++|+++|+ ++|.++ |.|.+|+++ .+|+++|||||+|.+.++|++
T Consensus 7 ~~~~~l~-V~nlp~-----------~~~~~~l~~~L~~~F~~~-----G~i~~v~~~--~~~~~~g~afV~f~~~~~a~~ 67 (282)
T 3pgw_A 7 RPNHTIY-INNLNE-----------KIKKDELKKSLYAIFSQF-----GQILDILVS--RSLKMRGQAFVIFKEVSSATN 67 (282)
T ss_pred CCCCEEE-EeCCCC-----------CCCHHHHHHHHHHHHhcc-----CCeEEEEEc--CCCCcceEEEEEECCHHHHHH
Confidence 3567899 999999 69999977 788866 999999887 489999999999999999977
Q ss_pred HH-CCCCce------eecCCCCCCCCCCCCCCCCC-----------------------------------CCC-------
Q 024012 139 LT-GVPGVL------SVQPDENFGSENKDYGGNNL-----------------------------------QNS------- 169 (274)
Q Consensus 139 a~-~~~g~~------~~~~~~~~~~~~~~~~~~~~-----------------------------------~~~------- 169 (274)
|+ .|+|.. .+..............+... ...
T Consensus 68 A~~~l~g~~~~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (282)
T 3pgw_A 68 ALRSMQGFPFYDKPMRIQYAKTDSDIIAKMKGTFVERDRKREKRKPKSQETPATKKAVQGGGATPVVGAVQGPVPGMPPM 147 (282)
T ss_pred HHHHhcCCeeCCcEEEEEEeccCcchhhhhcCCcccchhhhhhhhccccchhhhhhhccCcCCcccCCCCCCCCCCCCcc
Confidence 77 677642 22111100000000000000 000
Q ss_pred ---------------------CC-C----C------------------CCCCCCCCCccccEEEEcCCCCCCCHHHHHHH
Q 024012 170 ---------------------MV-P----S------------------DSSEASPTQIKTKKLFVTGLSFYTSEKTLRAA 205 (274)
Q Consensus 170 ---------------------~~-~----~------------------~~~~~~~~~~~~~~lfV~nLp~~~te~~L~~~ 205 (274)
.. + . ..........+.++|||+|||..+++++|+++
T Consensus 148 ~~~~~~~~~~~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~ 227 (282)
T 3pgw_A 148 TQAPRIMHHMPGQPPYMPPPGMIPPPGLAPGQIPPGAMPPQQLMPGQMPPAQPLSENPPNHILFLTNLPEETNELMLSML 227 (282)
T ss_pred cccccccccCCCCCCCCCCCCCCCCCCCCccccCcccCcccccCccccCccCCccCCCCCCEEEEeCCCCcCCHHHHHHH
Confidence 00 0 0 00000122335788999999999999999999
Q ss_pred HhccCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeC-CEEeEEEeec
Q 024012 206 FEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIIN-GWMIVVDVAK 263 (274)
Q Consensus 206 F~~fG~i~~v~i~~d~~~g~~rG~aFV~F~s~~~A~~Ai~~l~g~~l~-G~~l~V~~a~ 263 (274)
|++||.|.+++++.++ +|||||+|.+.++|.+|++.|||..+. |+.|+|+||+
T Consensus 228 F~~~G~i~~v~~~~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~ak 281 (282)
T 3pgw_A 228 FNQFPGFKEVRLVPGR-----HDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFAK 281 (282)
T ss_pred HHhcCCeEEEEEecCC-----CcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEEEec
Confidence 9999999999999664 689999999999999999999999999 9999999997
No 17
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.96 E-value=4e-30 Score=212.38 Aligned_cols=176 Identities=9% Similarity=0.085 Sum_probs=125.9
Q ss_pred CceeeeecCCCc-ceeEEecCCCCCCCCHHHHHHHHHHHHHhhhCCcccceEEEecCCCCCCeEEeeeCCHHHHHHHHC-
Q 024012 64 GTTLLFPLGTTK-HWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIYHVSWQSNFGFCCELDDECAQELTG- 141 (274)
Q Consensus 64 ~s~~lf~vgnl~-~~~~~~~~p~~~~~t~~~L~~~F~~~l~~~~G~v~~v~i~~~~~g~srgfgFV~f~~~e~a~~a~~- 141 (274)
.+.+|| ||||| . ++|+++|+++|.++ |.|.+|+++.+ ++|||||+|.+.++|++|++
T Consensus 3 ~~~~l~-V~nL~~~-----------~~~~~~L~~~F~~~-----G~v~~v~i~~~----~~g~afV~f~~~~~A~~Ai~~ 61 (205)
T 3tyt_A 3 DSPVLM-VYGLDQS-----------KMNCDRVFNVFCLY-----GNVEKVKFMKS----KPGAAMVEMADGYAVDRAITH 61 (205)
T ss_dssp CCSEEE-EECCCTT-----------TCCHHHHHHHHTTT-----SCEEEEEECTT----STTCEEEEESSHHHHHHHHHH
T ss_pred CCCEEE-EeCCCcc-----------cCCHHHHHHHHHhc-----CCeEEEEEecC----CCCEEEEEECCHHHHHHHHHH
Confidence 456799 99999 6 79999999999977 99999998742 48999999999999977764
Q ss_pred CCCcee------ecCCCCCCCCCCC---CCCCCCC-CC--CCCCCCC------CCCCCCccccEEEEcCCCCCCCHHHHH
Q 024012 142 VPGVLS------VQPDENFGSENKD---YGGNNLQ-NS--MVPSDSS------EASPTQIKTKKLFVTGLSFYTSEKTLR 203 (274)
Q Consensus 142 ~~g~~~------~~~~~~~~~~~~~---~~~~~~~-~~--~~~~~~~------~~~~~~~~~~~lfV~nLp~~~te~~L~ 203 (274)
|||... +..........+. ....... .. ..+.... .......++++|||+|||+++|+++|+
T Consensus 62 lng~~~~g~~l~v~~s~~~~~~p~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~p~~~l~v~NLp~~~t~~~L~ 141 (205)
T 3tyt_A 62 LNNNFMFGQKMNVCVSKQPAIMPGQSYGLEDGSCSYKDFSESRNNRFSTPEQAAKNRIQHPSNVLHFFNAPLEVTEENFF 141 (205)
T ss_dssp HTTCEETTEECEEEECSCSCCCCCSCCBCTTSCBSEEECTTCTTCSCSSHHHHTTSCCCCCCSEEEEEEECTTCCHHHHH
T ss_pred hCCCEECCceEEEEEccCCccCCCcccccccCCccccccCCCccccccCcccccccccCCCcceEEEeCCCCCCCHHHHH
Confidence 787522 2111100000000 0000000 00 0000000 000112457899999999999999999
Q ss_pred HHHhccCCe--EEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCE----EeEEEee
Q 024012 204 AAFEGFGEL--VEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGW----MIVVDVA 262 (274)
Q Consensus 204 ~~F~~fG~i--~~v~i~~d~~~g~~rG~aFV~F~s~~~A~~Ai~~l~g~~l~G~----~l~V~~a 262 (274)
++|++||.| .++++..+. +.++|+|||+|.+.++|.+||..|||..|.|+ ++.|.+|
T Consensus 142 ~~F~~~G~v~~~~v~~~~~~--~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~~~p~~vk~~ 204 (205)
T 3tyt_A 142 EICDELGVKRPTSVKVFSGK--SERSSSGLLEWDSKSDALETLGFLNHYQMKNPNGPYPYTLKLC 204 (205)
T ss_dssp HHHHHHTCCCCSEEEECSCC--SSSSEEEEEECSSHHHHHHHHHHHTTCEECCSSSSSCEECEEE
T ss_pred HHHHhcCCcceEEEEEEcCC--CCCceEEEEEeCCHHHHHHHHHHhCCCCccCCCCCcceEEEec
Confidence 999999999 899998875 56679999999999999999999999999986 5777665
No 18
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.96 E-value=1.8e-29 Score=207.03 Aligned_cols=176 Identities=18% Similarity=0.237 Sum_probs=129.9
Q ss_pred CceeeeecCCCcceeEEecCCCCCCCCHHHHHHHHHHHHHhhhCCcccceEEEecCCCCCCeEEeeeCCHHHHHHHHC-C
Q 024012 64 GTTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIYHVSWQSNFGFCCELDDECAQELTG-V 142 (274)
Q Consensus 64 ~s~~lf~vgnl~~~~~~~~~p~~~~~t~~~L~~~F~~~l~~~~G~v~~v~i~~~~~g~srgfgFV~f~~~e~a~~a~~-~ 142 (274)
.+++|| |+|||.| ++|+++|+++|.++ |.|.+|+++.+. +|||||+|.+.++|++|+. +
T Consensus 2 ~~~~l~-v~nlp~~----------~~~~~~l~~~F~~~-----G~i~~v~i~~~~----~g~afV~f~~~~~a~~A~~~l 61 (198)
T 1qm9_A 2 GNSVLL-VSNLNPE----------RVTPQSLFILFGVY-----GDVQRVKILFNK----KENALVQMADGNQAQLAMSHL 61 (198)
T ss_dssp CCCEEE-EECCCSS----------SCCHHHHHHHHHTT-----CCCSEEECSTTC----SSCCEEECTTTHHHHHHHHHH
T ss_pred CCcEEE-EeCCCcc----------cCCHHHHHHHHHhc-----CCEEEEEEEeCC----CCEEEEEECCHHHHHHHHHHh
Confidence 357899 9999995 59999999999977 999999887542 8999999999999988875 6
Q ss_pred CCce------eecCCCCCC---CC-C-------CCCCCCCCCCCCCCCCCCCCCCCCccccEEEEcCCCCCCCHHHHHHH
Q 024012 143 PGVL------SVQPDENFG---SE-N-------KDYGGNNLQNSMVPSDSSEASPTQIKTKKLFVTGLSFYTSEKTLRAA 205 (274)
Q Consensus 143 ~g~~------~~~~~~~~~---~~-~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~te~~L~~~ 205 (274)
+|.. .+....... .. . +.+..... ....+...........++++|||+|||..+++++|+++
T Consensus 62 ~~~~~~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~-~r~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~ 140 (198)
T 1qm9_A 62 NGHKLHGKPIRITLSKHQNVQLPREGQEDQGLTKDYGNSPL-HRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVL 140 (198)
T ss_dssp TTCCCSSCCCEEEECCCCSCCCSSSSSSSSSCEEESSCCCT-TSSSSCCCCCCSCCCCCCCEEEECCCCTTCCHHHHHHH
T ss_pred CCCeecCeEEEEEEecCCCcCCCCcCCccccccccccCCch-hhccCccccccccCCCCccEEEEeCCCCCCCHHHHHHH
Confidence 7642 221111000 00 0 00000000 00001111111122345889999999999999999999
Q ss_pred HhccC-CeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeC-CEEeEEEeecCC
Q 024012 206 FEGFG-ELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIIN-GWMIVVDVAKTT 265 (274)
Q Consensus 206 F~~fG-~i~~v~i~~d~~~g~~rG~aFV~F~s~~~A~~Ai~~l~g~~l~-G~~l~V~~a~~~ 265 (274)
|++|| .|.++++.++ ++|+|||+|.+.++|.+|+..|||..++ |++|+|+|++++
T Consensus 141 f~~~G~~v~~v~i~~~-----~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~~~ 197 (198)
T 1qm9_A 141 FSSNGGVVKGFKFFQK-----DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKST 197 (198)
T ss_dssp HHHTTSCCCEEEESST-----TSSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCEEEECCC
T ss_pred HHHcCCCceEEEEEeC-----CCcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEEEeeccc
Confidence 99999 9999999764 2789999999999999999999999999 999999999875
No 19
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.96 E-value=5.2e-29 Score=215.41 Aligned_cols=156 Identities=18% Similarity=0.200 Sum_probs=132.9
Q ss_pred CceeeeecCCCcceeEEecCCCCCCCCHHHHHHHHHHHHHhhhCCcccceEEEecCCCCCCeEEeeeCCHHHHHHHH-CC
Q 024012 64 GTTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIYHVSWQSNFGFCCELDDECAQELT-GV 142 (274)
Q Consensus 64 ~s~~lf~vgnl~~~~~~~~~p~~~~~t~~~L~~~F~~~l~~~~G~v~~v~i~~~~~g~srgfgFV~f~~~e~a~~a~-~~ 142 (274)
.+++|| |+|||. ++|+++|+++|.++ | |.++++ +.++|||||+|.+.++|++|+ .+
T Consensus 21 ~~~~l~-V~nLp~-----------~~te~~l~~~F~~~-----G-i~~~~~-----~~~~g~afV~f~~~~~A~~A~~~l 77 (284)
T 3smz_A 21 NRRKIL-IRGLPG-----------DVTNQEVHDLLSDY-----E-LKYCFV-----DKYKGTAFVTLLNGEQAEAAINAF 77 (284)
T ss_dssp CCCEEE-EECCCT-----------TCCHHHHHHHTTTS-----C-EEEEEE-----ETTTTEEEEEESSHHHHHHHHHHH
T ss_pred CCCEEE-EeCCCC-----------CCCHHHHHHHHHHc-----C-CEEEEE-----ecCCCEEEEEeCCHHHHHHHHHHc
Confidence 457799 999999 79999999999977 9 877776 678999999999999997777 45
Q ss_pred CCceeecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCC
Q 024012 143 PGVLSVQPDENFGSENKDYGGNNLQNSMVPSDSSEASPTQIKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKI 222 (274)
Q Consensus 143 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~d~~ 222 (274)
+|.... +..+.... .....+|||+|||+.+|+++|+++|++||.|..+.+++++.
T Consensus 78 ~~~~~~--------------g~~i~v~~-----------~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~ 132 (284)
T 3smz_A 78 HQSRLR--------------ERELSVQL-----------QPTDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSER 132 (284)
T ss_dssp TTCEET--------------TEECEEEE-----------CCCSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTT
T ss_pred CCCeeC--------------CeEEEEEe-----------cCCCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCC
Confidence 775421 00010000 12357999999999999999999999999999999999998
Q ss_pred CCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEeEEEeecCCCC
Q 024012 223 SKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVDVAKTTPK 267 (274)
Q Consensus 223 ~g~~rG~aFV~F~s~~~A~~Ai~~l~g~~l~G~~l~V~~a~~~~~ 267 (274)
+|.++|||||+|.+.++|.+|+..|+|..++|++|.|.++.++..
T Consensus 133 ~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~a~~~~~ 177 (284)
T 3smz_A 133 TGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHWTDAGQL 177 (284)
T ss_dssp TCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCGGGC
T ss_pred CCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECCCCCC
Confidence 999999999999999999999999999999999999999988653
No 20
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.96 E-value=7.4e-29 Score=212.28 Aligned_cols=156 Identities=20% Similarity=0.318 Sum_probs=130.2
Q ss_pred CCceeeeecCCCcceeEEecCCCCCCCCHHHHHHHHHHHHHhhhCCcccceEEEecCCCCCCeEEeeeCCHHHHHHHHC-
Q 024012 63 IGTTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIYHVSWQSNFGFCCELDDECAQELTG- 141 (274)
Q Consensus 63 ~~s~~lf~vgnl~~~~~~~~~p~~~~~t~~~L~~~F~~~l~~~~G~v~~v~i~~~~~g~srgfgFV~f~~~e~a~~a~~- 141 (274)
..+++|| |||||. ++|+++|+++|.++ |.|.+|++. +++|||||+|.+.++|++|+.
T Consensus 20 ~~~~~l~-V~nLp~-----------~~te~~l~~~F~~~-----G~i~~v~i~-----~~kg~afV~f~~~~~A~~A~~~ 77 (261)
T 3sde_A 20 TQRCRLF-VGNLPT-----------DITEEDFKRLFERY-----GEPSEVFIN-----RDRGFGFIRLESRTLAEIAKAE 77 (261)
T ss_dssp CGGGEEE-EESCCT-----------TCCHHHHHHHTGGG-----CCCSEEEEE-----TTTTEEEEECSSHHHHHHHHHH
T ss_pred CCCCEEE-EECCCC-----------CCCHHHHHHHHHhc-----CCEEEEEEe-----CCCcEEEEEECCHHHHHHHHHH
Confidence 4567899 999999 69999999999976 999999885 358999999999999977775
Q ss_pred CCCceeecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecC
Q 024012 142 VPGVLSVQPDENFGSENKDYGGNNLQNSMVPSDSSEASPTQIKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDK 221 (274)
Q Consensus 142 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~d~ 221 (274)
++|.... +..+.... ..+..+|||+|||+.+|+++|+++|++||.|.+|.|++|.
T Consensus 78 l~g~~i~--------------g~~l~v~~-----------a~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~ 132 (261)
T 3sde_A 78 LDGTILK--------------SRPLRIRF-----------ATHGAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVDD 132 (261)
T ss_dssp HTTCEET--------------TEECEEEE-----------CCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET
T ss_pred cCCcEEC--------------CceeEeee-----------cccCCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeCC
Confidence 7775421 11111111 0126789999999999999999999999999999999995
Q ss_pred CCCCcceEEEEEeCCHHHHHHHHHHh-CCceeC---CEEeEEEeecCCC
Q 024012 222 ISKRSKGYAFIEYTTEEAASAALKEM-NGKIIN---GWMIVVDVAKTTP 266 (274)
Q Consensus 222 ~~g~~rG~aFV~F~s~~~A~~Ai~~l-~g~~l~---G~~l~V~~a~~~~ 266 (274)
+|.++|||||+|.+.++|.+|+..| +|..+. |++|.|+++.+..
T Consensus 133 -~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~r~i~v~~~~~~~ 180 (261)
T 3sde_A 133 -RGRATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPVIVEPMEQFD 180 (261)
T ss_dssp -TSCEEEEEEEEESSHHHHHHHHHHHHHSCEESSSSCCBCEEEECCCEE
T ss_pred -CCCcCcEEEEEeCCHHHHHHHHHHhcCCeEEecCCCceEEEeeccccC
Confidence 9999999999999999999999999 555555 9999999998764
No 21
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.94 E-value=1.4e-26 Score=183.29 Aligned_cols=146 Identities=21% Similarity=0.271 Sum_probs=108.9
Q ss_pred ceEEEecCCCCCCeEEeeeCCHHHHHHHHC-CC------CceeecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcc
Q 024012 112 AQMCIYHVSWQSNFGFCCELDDECAQELTG-VP------GVLSVQPDENFGSENKDYGGNNLQNSMVPSDSSEASPTQIK 184 (274)
Q Consensus 112 v~i~~~~~g~srgfgFV~f~~~e~a~~a~~-~~------g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (274)
++++.+ ..+++|||||+|.+.++|++|+. ++ |.......... ..................
T Consensus 3 ~kl~ln-~~~~~G~~fV~f~~~~~A~~al~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~ 69 (158)
T 2kn4_A 3 YKLILN-GKTLKGETTTEAVDAATAEKVFKQYANDNGVDGEWTYDDATKT------------FTVTEGSHHHHHHMDVEG 69 (158)
T ss_dssp EEEEEE-CSSCEEEEEEECSSHHHHHHHHHHHHHHHTCCCEEEEETTTTE------------EEEECCCCCSSCCCCCCB
T ss_pred EEEEec-CccccchhHHHHHHHHhHHHHHHhhcccCCCCCcccccCcccc------------ccccccccccccccCCCC
Confidence 344433 33689999999999999977763 22 22211100000 000000011111223345
Q ss_pred ccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEeEEEeecC
Q 024012 185 TKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVDVAKT 264 (274)
Q Consensus 185 ~~~lfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~d~~~g~~rG~aFV~F~s~~~A~~Ai~~l~g~~l~G~~l~V~~a~~ 264 (274)
..+|||+|||+++++++|+++|++||.|.+++|++|+.+|.++|||||+|.+.++|.+|++.|||..++|++|+|+||++
T Consensus 70 ~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 149 (158)
T 2kn4_A 70 MTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARY 149 (158)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCC
Confidence 78999999999999999999999999999999999988999999999999999999999999999999999999999998
Q ss_pred CCCCCC
Q 024012 265 TPKYSR 270 (274)
Q Consensus 265 ~~~~~~ 270 (274)
++....
T Consensus 150 ~~~~~~ 155 (158)
T 2kn4_A 150 GRPPDS 155 (158)
T ss_dssp SSCCCC
T ss_pred CCCCCC
Confidence 765443
No 22
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.92 E-value=9.6e-25 Score=159.33 Aligned_cols=82 Identities=30% Similarity=0.499 Sum_probs=79.1
Q ss_pred cccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEeEEEeec
Q 024012 184 KTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVDVAK 263 (274)
Q Consensus 184 ~~~~lfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~d~~~g~~rG~aFV~F~s~~~A~~Ai~~l~g~~l~G~~l~V~~a~ 263 (274)
.+++|||+|||+++|+++|+++|++||+|.+++|++|+.+|.++|||||+|.+.++|++|++.|||..++|++|+|+||+
T Consensus 18 ~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~Ak 97 (99)
T 4fxv_A 18 QGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYAR 97 (99)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEee
Confidence 36789999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CC
Q 024012 264 TT 265 (274)
Q Consensus 264 ~~ 265 (274)
|.
T Consensus 98 PS 99 (99)
T 4fxv_A 98 PS 99 (99)
T ss_dssp BC
T ss_pred CC
Confidence 73
No 23
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.90 E-value=2.1e-24 Score=155.07 Aligned_cols=86 Identities=21% Similarity=0.387 Sum_probs=80.0
Q ss_pred ccEEEEcCCCCCCCHHHHHHHHhccC-CeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHh-CCceeCCEEeEEEee
Q 024012 185 TKKLFVTGLSFYTSEKTLRAAFEGFG-ELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEM-NGKIINGWMIVVDVA 262 (274)
Q Consensus 185 ~~~lfV~nLp~~~te~~L~~~F~~fG-~i~~v~i~~d~~~g~~rG~aFV~F~s~~~A~~Ai~~l-~g~~l~G~~l~V~~a 262 (274)
+++|||+|||+++|+++|+++|++|| +|.+|+|++|+.+|.+||||||+|.+.++|++|++.| ++..++|++|+|+||
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a 80 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYS 80 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEc
Confidence 46899999999999999999999999 8999999999999999999999999999999999887 466799999999999
Q ss_pred cCCCCCCC
Q 024012 263 KTTPKYSR 270 (274)
Q Consensus 263 ~~~~~~~~ 270 (274)
+++++...
T Consensus 81 ~~~~~~~~ 88 (91)
T 2lxi_A 81 DPKPKINE 88 (91)
T ss_dssp CSCCCCSC
T ss_pred CCCCCCCC
Confidence 99887654
No 24
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.89 E-value=6.5e-23 Score=152.45 Aligned_cols=84 Identities=20% Similarity=0.302 Sum_probs=80.1
Q ss_pred ccccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEeEEEee
Q 024012 183 IKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVDVA 262 (274)
Q Consensus 183 ~~~~~lfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~d~~~g~~rG~aFV~F~s~~~A~~Ai~~l~g~~l~G~~l~V~~a 262 (274)
.+.++|||+|||+.+++++|+++|++||.|.+++|++|+.+|+++|||||+|.+.++|++|++.|||..+.|+.|+|++|
T Consensus 4 ~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~a 83 (110)
T 3s8s_A 4 IPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQLD 83 (110)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 34789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCC
Q 024012 263 KTTP 266 (274)
Q Consensus 263 ~~~~ 266 (274)
....
T Consensus 84 ~~~~ 87 (110)
T 3s8s_A 84 IKGQ 87 (110)
T ss_dssp STTH
T ss_pred CCCc
Confidence 7653
No 25
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.89 E-value=1.6e-22 Score=148.48 Aligned_cols=91 Identities=27% Similarity=0.383 Sum_probs=84.6
Q ss_pred CCccccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEeEEE
Q 024012 181 TQIKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVD 260 (274)
Q Consensus 181 ~~~~~~~lfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~d~~~g~~rG~aFV~F~s~~~A~~Ai~~l~g~~l~G~~l~V~ 260 (274)
...+.++|||+|||.++++++|+++|++||.|.+|.|++++.++.++|||||+|.+.++|++|+..|||..|.|++|+|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 90 (103)
T 2cq0_A 11 RADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVE 90 (103)
T ss_dssp CCSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEE
Confidence 34558999999999999999999999999999999999998899999999999999999999999999999999999999
Q ss_pred eecCCCCCCCC
Q 024012 261 VAKTTPKYSRG 271 (274)
Q Consensus 261 ~a~~~~~~~~~ 271 (274)
||++++.....
T Consensus 91 ~a~~~~~~~~~ 101 (103)
T 2cq0_A 91 WAKPSTNSGPS 101 (103)
T ss_dssp ESSCCCCSCCC
T ss_pred ECCCCCCCCCC
Confidence 99988765443
No 26
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.89 E-value=1.4e-22 Score=142.77 Aligned_cols=83 Identities=29% Similarity=0.517 Sum_probs=79.4
Q ss_pred ccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEeEEEeecC
Q 024012 185 TKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVDVAKT 264 (274)
Q Consensus 185 ~~~lfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~d~~~g~~rG~aFV~F~s~~~A~~Ai~~l~g~~l~G~~l~V~~a~~ 264 (274)
+.+|||+|||+++++++|+++|++||.|.++.+++++.+|.++|||||+|.+.++|++|++.|||..++|++|+|+||++
T Consensus 1 t~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 80 (83)
T 3md1_A 1 TFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAK 80 (83)
T ss_dssp CEEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CeEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCc
Confidence 36899999999999999999999999999999999988999999999999999999999999999999999999999998
Q ss_pred CCC
Q 024012 265 TPK 267 (274)
Q Consensus 265 ~~~ 267 (274)
+++
T Consensus 81 ~~~ 83 (83)
T 3md1_A 81 LEH 83 (83)
T ss_dssp CCC
T ss_pred CCC
Confidence 753
No 27
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.89 E-value=1.2e-22 Score=144.36 Aligned_cols=83 Identities=28% Similarity=0.500 Sum_probs=77.6
Q ss_pred cccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEeEEEeec
Q 024012 184 KTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVDVAK 263 (274)
Q Consensus 184 ~~~~lfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~d~~~g~~rG~aFV~F~s~~~A~~Ai~~l~g~~l~G~~l~V~~a~ 263 (274)
+.++|||+|||.++++++|+++|++||.|.++.+++++.+|.++|||||+|.+.++|++|++.|||..++|++|+|+||+
T Consensus 5 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 84 (87)
T 3bs9_A 5 SHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWAT 84 (87)
T ss_dssp -CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEecC
Confidence 47899999999999999999999999999999999998899999999999999999999999999999999999999999
Q ss_pred CCC
Q 024012 264 TTP 266 (274)
Q Consensus 264 ~~~ 266 (274)
+++
T Consensus 85 ~kp 87 (87)
T 3bs9_A 85 RKP 87 (87)
T ss_dssp ---
T ss_pred CCC
Confidence 864
No 28
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.89 E-value=9.7e-23 Score=149.33 Aligned_cols=91 Identities=32% Similarity=0.532 Sum_probs=84.9
Q ss_pred CccccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEeEEEe
Q 024012 182 QIKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVDV 261 (274)
Q Consensus 182 ~~~~~~lfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~d~~~g~~rG~aFV~F~s~~~A~~Ai~~l~g~~l~G~~l~V~~ 261 (274)
..+.++|||+|||+.+++++|+++|++||.|.++.|++++.++.++|||||+|.+.++|++|++.|||..+.|++|+|.|
T Consensus 9 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 88 (102)
T 2cqb_A 9 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 88 (102)
T ss_dssp CCCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEe
Confidence 34588999999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred ecCCCCCCCCC
Q 024012 262 AKTTPKYSRGR 272 (274)
Q Consensus 262 a~~~~~~~~~r 272 (274)
|++++....+.
T Consensus 89 a~~~~~~~~~~ 99 (102)
T 2cqb_A 89 AKPMRIKESGP 99 (102)
T ss_dssp CCCCCCCCCCC
T ss_pred CCCCCCCCCCC
Confidence 99987655544
No 29
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.89 E-value=1.8e-23 Score=161.23 Aligned_cols=92 Identities=29% Similarity=0.503 Sum_probs=84.9
Q ss_pred CCCCccccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEeE
Q 024012 179 SPTQIKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIV 258 (274)
Q Consensus 179 ~~~~~~~~~lfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~d~~~g~~rG~aFV~F~s~~~A~~Ai~~l~g~~l~G~~l~ 258 (274)
.....+.++|||+|||+++|+++|+++|++||.|..|+|+.++.++.++|||||+|.+.++|++|++.|||..|.|++|+
T Consensus 41 ~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~ 120 (135)
T 2lea_A 41 PPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELR 120 (135)
T ss_dssp CSSGGGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence 44455688999999999999999999999999999999999998999999999999999999999999999999999999
Q ss_pred EEeecCCCCCCC
Q 024012 259 VDVAKTTPKYSR 270 (274)
Q Consensus 259 V~~a~~~~~~~~ 270 (274)
|+||++++....
T Consensus 121 V~~a~~~~~~~~ 132 (135)
T 2lea_A 121 VQMARYGRPPDS 132 (135)
T ss_dssp EEECCCCCCCTT
T ss_pred EEECCCCCCCcc
Confidence 999998765443
No 30
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.89 E-value=1.6e-22 Score=147.30 Aligned_cols=90 Identities=30% Similarity=0.531 Sum_probs=84.2
Q ss_pred ccccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEeEEEee
Q 024012 183 IKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVDVA 262 (274)
Q Consensus 183 ~~~~~lfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~d~~~g~~rG~aFV~F~s~~~A~~Ai~~l~g~~l~G~~l~V~~a 262 (274)
.+.++|||+|||+++++++|+++|++||.|.++.|++++.++.++|||||+|.+.++|++|++.|||..+.|++|+|.++
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 85 (99)
T 1whw_A 6 SGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLPS 85 (99)
T ss_dssp CSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 45789999999999999999999999999999999999989999999999999999999999999999999999999999
Q ss_pred cCCCCCCCCC
Q 024012 263 KTTPKYSRGR 272 (274)
Q Consensus 263 ~~~~~~~~~r 272 (274)
++++......
T Consensus 86 ~~~~~~~~~~ 95 (99)
T 1whw_A 86 TIKKEASQSG 95 (99)
T ss_dssp CCCSTTCCCC
T ss_pred CCCcccccCC
Confidence 9987654443
No 31
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.89 E-value=5.5e-22 Score=148.52 Aligned_cols=90 Identities=26% Similarity=0.462 Sum_probs=83.7
Q ss_pred CCCccccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEeEE
Q 024012 180 PTQIKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVV 259 (274)
Q Consensus 180 ~~~~~~~~lfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~d~~~g~~rG~aFV~F~s~~~A~~Ai~~l~g~~l~G~~l~V 259 (274)
......++|||+|||+.+++++|+++|++||.|..|+|++++.++.++|||||+|.+.++|++|++.|||..|+|+.|+|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 89 (115)
T 2dgo_A 10 KDTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRT 89 (115)
T ss_dssp CCSTTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEE
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 33456889999999999999999999999999999999999889999999999999999999999999999999999999
Q ss_pred EeecCCCCCC
Q 024012 260 DVAKTTPKYS 269 (274)
Q Consensus 260 ~~a~~~~~~~ 269 (274)
.||++++...
T Consensus 90 ~~a~~~~~~~ 99 (115)
T 2dgo_A 90 NWATRKPPAP 99 (115)
T ss_dssp EESSCCCCCS
T ss_pred EEccCCCCCC
Confidence 9999876443
No 32
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.89 E-value=2.1e-22 Score=146.79 Aligned_cols=90 Identities=31% Similarity=0.488 Sum_probs=83.5
Q ss_pred CccccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEeEEEe
Q 024012 182 QIKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVDV 261 (274)
Q Consensus 182 ~~~~~~lfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~d~~~g~~rG~aFV~F~s~~~A~~Ai~~l~g~~l~G~~l~V~~ 261 (274)
....++|||+|||.++++++|+++|++||.|.++.|++++.++.++|||||+|.+.++|++|++ |||..++|++|+|.+
T Consensus 7 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l~V~~ 85 (99)
T 2dgs_A 7 GSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVEVKR 85 (99)
T ss_dssp CSSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeEEEEEE
Confidence 3458899999999999999999999999999999999999899999999999999999999997 999999999999999
Q ss_pred ecCCCCCCCCC
Q 024012 262 AKTTPKYSRGR 272 (274)
Q Consensus 262 a~~~~~~~~~r 272 (274)
+++++.....+
T Consensus 86 a~~~~~~~~~~ 96 (99)
T 2dgs_A 86 AEPRDSKSSGP 96 (99)
T ss_dssp CCCCCCCCCCS
T ss_pred CCCCcccCCCC
Confidence 99887655443
No 33
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.88 E-value=5e-22 Score=145.82 Aligned_cols=90 Identities=21% Similarity=0.424 Sum_probs=82.9
Q ss_pred CCccccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEeEEE
Q 024012 181 TQIKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVD 260 (274)
Q Consensus 181 ~~~~~~~lfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~d~~~g~~rG~aFV~F~s~~~A~~Ai~~l~g~~l~G~~l~V~ 260 (274)
...+.++|||+|||+++++++|+++|++|| |.+|+|++++.+|+++|||||+|.+.++|++|+ .|||..|.|++|+|.
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~ 88 (103)
T 2dng_A 11 PTEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLRVD 88 (103)
T ss_dssp CSSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEECEEE
T ss_pred CCCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEEEEE
Confidence 344588999999999999999999999997 999999999989999999999999999999999 999999999999999
Q ss_pred eecCCCCCCCCC
Q 024012 261 VAKTTPKYSRGR 272 (274)
Q Consensus 261 ~a~~~~~~~~~r 272 (274)
+|++++....+.
T Consensus 89 ~a~~~~~~~~~~ 100 (103)
T 2dng_A 89 IAEGRKQDKSGP 100 (103)
T ss_dssp ECCCCCCCCSSC
T ss_pred EecCCCCCCCCC
Confidence 999887655443
No 34
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.88 E-value=3.5e-22 Score=149.62 Aligned_cols=90 Identities=27% Similarity=0.402 Sum_probs=84.0
Q ss_pred CccccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEeEEEe
Q 024012 182 QIKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVDV 261 (274)
Q Consensus 182 ~~~~~~lfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~d~~~g~~rG~aFV~F~s~~~A~~Ai~~l~g~~l~G~~l~V~~ 261 (274)
....++|||+|||+++++++|+++|++||.|.+++|++++.++.++|||||+|.+.++|++|++.|||..|.|++|+|+|
T Consensus 22 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 101 (115)
T 2cpz_A 22 GPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQL 101 (115)
T ss_dssp CSTTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 34578999999999999999999999999999999999998999999999999999999999999999999999999999
Q ss_pred ecCCCCCCCC
Q 024012 262 AKTTPKYSRG 271 (274)
Q Consensus 262 a~~~~~~~~~ 271 (274)
++++......
T Consensus 102 a~~~~~~~~~ 111 (115)
T 2cpz_A 102 KRSKNDSKSG 111 (115)
T ss_dssp CCCSCCCCCC
T ss_pred cCCCCcCCCC
Confidence 9988765443
No 35
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.88 E-value=2.1e-22 Score=145.49 Aligned_cols=89 Identities=31% Similarity=0.513 Sum_probs=83.8
Q ss_pred cccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEeEEEeec
Q 024012 184 KTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVDVAK 263 (274)
Q Consensus 184 ~~~~lfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~d~~~g~~rG~aFV~F~s~~~A~~Ai~~l~g~~l~G~~l~V~~a~ 263 (274)
+.++|||+|||.++++++|+++|++||.|.++.+++++.++.++|||||+|.+.++|++|++.|||..+.|++|+|++++
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 83 (95)
T 2dnz_A 4 GSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHVT 83 (95)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEESS
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEcc
Confidence 47899999999999999999999999999999999999899999999999999999999999999999999999999999
Q ss_pred CCCCCCCCC
Q 024012 264 TTPKYSRGR 272 (274)
Q Consensus 264 ~~~~~~~~r 272 (274)
++.....+.
T Consensus 84 ~~~~~~~~~ 92 (95)
T 2dnz_A 84 ERLDGGSGP 92 (95)
T ss_dssp CCCCCCCCC
T ss_pred cccCCCCCC
Confidence 987655543
No 36
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.88 E-value=2.1e-22 Score=148.36 Aligned_cols=91 Identities=27% Similarity=0.371 Sum_probs=84.4
Q ss_pred CCCccccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEeEE
Q 024012 180 PTQIKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVV 259 (274)
Q Consensus 180 ~~~~~~~~lfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~d~~~g~~rG~aFV~F~s~~~A~~Ai~~l~g~~l~G~~l~V 259 (274)
......++|||+|||+.+++++|+++|++||.|..+.|++++.++.++|||||+|.+.++|++|++.|||..+.|++|+|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 89 (105)
T 1x5u_A 10 SERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRV 89 (105)
T ss_dssp CCCCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEE
Confidence 33455889999999999999999999999999999999999989999999999999999999999999999999999999
Q ss_pred EeecCCCCCCC
Q 024012 260 DVAKTTPKYSR 270 (274)
Q Consensus 260 ~~a~~~~~~~~ 270 (274)
.+|+++++...
T Consensus 90 ~~a~~~~~~~~ 100 (105)
T 1x5u_A 90 NKASAHNKNLS 100 (105)
T ss_dssp EETTTTSCCCC
T ss_pred EECCCCCcCCC
Confidence 99998875443
No 37
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.88 E-value=1.3e-22 Score=148.98 Aligned_cols=91 Identities=27% Similarity=0.418 Sum_probs=84.2
Q ss_pred CCCccccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEeEE
Q 024012 180 PTQIKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVV 259 (274)
Q Consensus 180 ~~~~~~~~lfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~d~~~g~~rG~aFV~F~s~~~A~~Ai~~l~g~~l~G~~l~V 259 (274)
+...+.++|||+|||+++++++|+++|++||.|..+.|+.++.++.++|||||+|.+.++|++|++.|||..++|++|+|
T Consensus 8 ~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 87 (103)
T 2dnm_A 8 PDVDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRV 87 (103)
T ss_dssp SCCSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEE
T ss_pred CCCCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEE
Confidence 34455899999999999999999999999999999999999989999999999999999999999999999999999999
Q ss_pred EeecCCCCCCC
Q 024012 260 DVAKTTPKYSR 270 (274)
Q Consensus 260 ~~a~~~~~~~~ 270 (274)
.+|++.+....
T Consensus 88 ~~a~~~~~~~~ 98 (103)
T 2dnm_A 88 QVARYGRRDLS 98 (103)
T ss_dssp EECSSCCSCCC
T ss_pred EECCcCCCCCC
Confidence 99998765443
No 38
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.88 E-value=4.6e-23 Score=149.02 Aligned_cols=81 Identities=22% Similarity=0.409 Sum_probs=76.2
Q ss_pred cccEEEEcCCCCCCCHHHHHHHHhccCC--eEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCc----eeCCEEe
Q 024012 184 KTKKLFVTGLSFYTSEKTLRAAFEGFGE--LVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGK----IINGWMI 257 (274)
Q Consensus 184 ~~~~lfV~nLp~~~te~~L~~~F~~fG~--i~~v~i~~d~~~g~~rG~aFV~F~s~~~A~~Ai~~l~g~----~l~G~~l 257 (274)
.-.+|||+|||+++|+++|+++|++||. |.+|++++|+.+|++||||||+|.+.++|++|++.|||. .++||+|
T Consensus 8 ~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr~i 87 (95)
T 2lkz_A 8 HMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGKTI 87 (95)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTEEE
T ss_pred ccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCEEE
Confidence 3578999999999999999999999995 679999999999999999999999999999999999997 5999999
Q ss_pred EEEeecC
Q 024012 258 VVDVAKT 264 (274)
Q Consensus 258 ~V~~a~~ 264 (274)
.|+||++
T Consensus 88 ~V~~Aks 94 (95)
T 2lkz_A 88 GVDFAKS 94 (95)
T ss_dssp EEEECCC
T ss_pred EEEEccC
Confidence 9999985
No 39
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.88 E-value=1.6e-22 Score=148.12 Aligned_cols=92 Identities=35% Similarity=0.610 Sum_probs=85.2
Q ss_pred CCccccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEeEEE
Q 024012 181 TQIKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVD 260 (274)
Q Consensus 181 ~~~~~~~lfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~d~~~g~~rG~aFV~F~s~~~A~~Ai~~l~g~~l~G~~l~V~ 260 (274)
...+.++|||+|||+++++++|+++|++||.|.+++|++++.++.++|||||+|.+.++|.+|++.|||..+.|++|+|+
T Consensus 8 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 87 (102)
T 1x5s_A 8 MASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVD 87 (102)
T ss_dssp CCCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 34458899999999999999999999999999999999999899999999999999999999999999999999999999
Q ss_pred eecCCCCCCCCC
Q 024012 261 VAKTTPKYSRGR 272 (274)
Q Consensus 261 ~a~~~~~~~~~r 272 (274)
||+++.....++
T Consensus 88 ~a~~~~~~~~~~ 99 (102)
T 1x5s_A 88 QAGKSSDNRSGP 99 (102)
T ss_dssp EEECCCCCCCCC
T ss_pred ECCCCCCCCCCC
Confidence 999987655543
No 40
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.88 E-value=2.7e-22 Score=150.35 Aligned_cols=82 Identities=30% Similarity=0.586 Sum_probs=76.4
Q ss_pred cccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEeEEEeec
Q 024012 184 KTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVDVAK 263 (274)
Q Consensus 184 ~~~~lfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~d~~~g~~rG~aFV~F~s~~~A~~Ai~~l~g~~l~G~~l~V~~a~ 263 (274)
...+|||+|||+++|+++|+++|++||.|.+|+|++|+ +.+||||||+|.+.++|++||+.|||..++|++|+|.+++
T Consensus 4 ~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~--~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~ 81 (115)
T 4f25_A 4 GSGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFK 81 (115)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESS
T ss_pred CCCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecC--CCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECC
Confidence 36789999999999999999999999999999999995 5589999999999999999999999999999999999998
Q ss_pred CCCC
Q 024012 264 TTPK 267 (274)
Q Consensus 264 ~~~~ 267 (274)
++..
T Consensus 82 ~~~~ 85 (115)
T 4f25_A 82 SRKE 85 (115)
T ss_dssp CCCC
T ss_pred Cccc
Confidence 7653
No 41
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.88 E-value=1.7e-22 Score=146.30 Aligned_cols=88 Identities=32% Similarity=0.486 Sum_probs=82.7
Q ss_pred cccEEEEcCCCCCCCHHHHHHHHhccCCeEEE-EEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEeEEEee
Q 024012 184 KTKKLFVTGLSFYTSEKTLRAAFEGFGELVEV-KIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVDVA 262 (274)
Q Consensus 184 ~~~~lfV~nLp~~~te~~L~~~F~~fG~i~~v-~i~~d~~~g~~rG~aFV~F~s~~~A~~Ai~~l~g~~l~G~~l~V~~a 262 (274)
+.++|||+|||+++++++|+++|++||.|.++ +|++|+.+|.++|||||+|.+.++|++|+..|||..++|++|+|+||
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 83 (96)
T 1x5t_A 4 GSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYA 83 (96)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEES
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEe
Confidence 47899999999999999999999999999999 99999889999999999999999999999999999999999999999
Q ss_pred cCCCCCCCC
Q 024012 263 KTTPKYSRG 271 (274)
Q Consensus 263 ~~~~~~~~~ 271 (274)
++++....+
T Consensus 84 ~~~~~~~~~ 92 (96)
T 1x5t_A 84 FKKDSKGSG 92 (96)
T ss_dssp CCCCCCCCC
T ss_pred cccCCCCCC
Confidence 988754443
No 42
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.88 E-value=6.6e-22 Score=142.84 Aligned_cols=85 Identities=33% Similarity=0.531 Sum_probs=80.5
Q ss_pred CCCccccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEeEE
Q 024012 180 PTQIKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVV 259 (274)
Q Consensus 180 ~~~~~~~~lfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~d~~~g~~rG~aFV~F~s~~~A~~Ai~~l~g~~l~G~~l~V 259 (274)
....+.++|||+|||+.+++++|+++|++||.|.++.+++++.++.++|||||+|.+.++|++|++.|||..++|++|+|
T Consensus 10 ~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 89 (95)
T 2cqc_A 10 ANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRV 89 (95)
T ss_dssp CSCCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEE
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 34456889999999999999999999999999999999999989999999999999999999999999999999999999
Q ss_pred EeecC
Q 024012 260 DVAKT 264 (274)
Q Consensus 260 ~~a~~ 264 (274)
+||++
T Consensus 90 ~~a~~ 94 (95)
T 2cqc_A 90 SGPSS 94 (95)
T ss_dssp ECCSC
T ss_pred EecCC
Confidence 99975
No 43
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.88 E-value=4.5e-22 Score=147.94 Aligned_cols=91 Identities=31% Similarity=0.518 Sum_probs=84.6
Q ss_pred CCccccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhC------CceeCC
Q 024012 181 TQIKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMN------GKIING 254 (274)
Q Consensus 181 ~~~~~~~lfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~d~~~g~~rG~aFV~F~s~~~A~~Ai~~l~------g~~l~G 254 (274)
...+.++|||+|||+++++++|+++|++||.|.+|+|++|+.+|.++|||||+|.+.++|.+|+..|| |..++|
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g 90 (111)
T 1x4h_A 11 DVTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDG 90 (111)
T ss_dssp CCCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSS
T ss_pred cCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcC
Confidence 34558899999999999999999999999999999999999899999999999999999999999999 999999
Q ss_pred EEeEEEeecCCCCCCCC
Q 024012 255 WMIVVDVAKTTPKYSRG 271 (274)
Q Consensus 255 ~~l~V~~a~~~~~~~~~ 271 (274)
++|+|.||++++...+.
T Consensus 91 ~~l~v~~a~~~~~~~~~ 107 (111)
T 1x4h_A 91 RQLKVDLAVTRDEAASG 107 (111)
T ss_dssp CEEEEECCCCCCCCCCC
T ss_pred EEEEEEECCCCccCCCC
Confidence 99999999988765543
No 44
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.88 E-value=3.6e-22 Score=147.47 Aligned_cols=94 Identities=22% Similarity=0.477 Sum_probs=85.8
Q ss_pred CCCCccccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEec-CCCCCcceEEEEEeCCHHHHHHHHHHh-CCceeCCEE
Q 024012 179 SPTQIKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMD-KISKRSKGYAFIEYTTEEAASAALKEM-NGKIINGWM 256 (274)
Q Consensus 179 ~~~~~~~~~lfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~d-~~~g~~rG~aFV~F~s~~~A~~Ai~~l-~g~~l~G~~ 256 (274)
.......++|||+|||+.+++++|+++|++||.|..|.|+++ +.++.++|||||+|.+.++|++|+..| ||..+.|++
T Consensus 9 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~ 88 (107)
T 2cph_A 9 VPKKQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRR 88 (107)
T ss_dssp SCCSSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCB
T ss_pred cccCCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCE
Confidence 334456899999999999999999999999999999999999 789999999999999999999999999 999999999
Q ss_pred eEEEeecCCCCCCCCC
Q 024012 257 IVVDVAKTTPKYSRGR 272 (274)
Q Consensus 257 l~V~~a~~~~~~~~~r 272 (274)
|+|.||++++....++
T Consensus 89 l~v~~a~~~~~~~~~~ 104 (107)
T 2cph_A 89 LVLEWADSEVTVQSGP 104 (107)
T ss_dssp CEEEECCCCCCCCCSC
T ss_pred EEEEeCCCCCCCCCCC
Confidence 9999999987655443
No 45
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.88 E-value=5.3e-22 Score=145.98 Aligned_cols=89 Identities=21% Similarity=0.406 Sum_probs=82.6
Q ss_pred CccccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCC-CCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEeEEE
Q 024012 182 QIKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKIS-KRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVD 260 (274)
Q Consensus 182 ~~~~~~lfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~d~~~-g~~rG~aFV~F~s~~~A~~Ai~~l~g~~l~G~~l~V~ 260 (274)
..+.++|||+|||+++++++|+++|++|| |.+|.|++++.+ |.++|||||+|.+.++|++|+ .|||..++|++|+|+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~ 89 (104)
T 1wi8_A 12 KSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRIRVD 89 (104)
T ss_dssp SSSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEECEEE
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEEEEE
Confidence 34578999999999999999999999999 999999999987 999999999999999999999 999999999999999
Q ss_pred eecCCCCCCCCC
Q 024012 261 VAKTTPKYSRGR 272 (274)
Q Consensus 261 ~a~~~~~~~~~r 272 (274)
+|++++...+++
T Consensus 90 ~a~~~~~~~~~~ 101 (104)
T 1wi8_A 90 VADQAQDKDSGP 101 (104)
T ss_dssp ECCCCCCCCCCC
T ss_pred EccCCCCCCCCC
Confidence 999987665543
No 46
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.88 E-value=3.6e-22 Score=141.25 Aligned_cols=81 Identities=35% Similarity=0.598 Sum_probs=78.1
Q ss_pred ccccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEeEEEee
Q 024012 183 IKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVDVA 262 (274)
Q Consensus 183 ~~~~~lfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~d~~~g~~rG~aFV~F~s~~~A~~Ai~~l~g~~l~G~~l~V~~a 262 (274)
.+.++|||+|||+++++++|+++|++||.|.++.+++++.+|.++|||||+|.+.++|.+|++.|||..++|++|+|+||
T Consensus 5 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 84 (85)
T 3mdf_A 5 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 84 (85)
T ss_dssp CCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 35889999999999999999999999999999999999889999999999999999999999999999999999999998
Q ss_pred c
Q 024012 263 K 263 (274)
Q Consensus 263 ~ 263 (274)
+
T Consensus 85 k 85 (85)
T 3mdf_A 85 K 85 (85)
T ss_dssp C
T ss_pred C
Confidence 5
No 47
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.88 E-value=4.2e-22 Score=156.25 Aligned_cols=134 Identities=16% Similarity=0.195 Sum_probs=99.4
Q ss_pred CCCCCCeEEeeeCCHHHHHHHH-CC-C-----CceeecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccEEEEc
Q 024012 119 VSWQSNFGFCCELDDECAQELT-GV-P-----GVLSVQPDENFGSENKDYGGNNLQNSMVPSDSSEASPTQIKTKKLFVT 191 (274)
Q Consensus 119 ~g~srgfgFV~f~~~e~a~~a~-~~-~-----g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~ 191 (274)
....+|+++|+|.+.++|++|+ ++ | |.+.+....... .. ...................++|||+
T Consensus 9 g~~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G~~~~~~a~~~~-----~~----~~~~~~~~~~~~~~~~~~~~~l~V~ 79 (150)
T 2i2y_A 9 GKTLKGETTTEAVDAATAEKVFKQYANDNGVDGEWTYDDATKTF-----TV----TEGSHHHHHHMHRDSCPLDCKVYVG 79 (150)
T ss_dssp CSSSCEEEEEECSSHHHHTTTHHHHHHHHTCCCEEEEETTTTEE-----EE----ECSSSSCCCCSCSSSSTTSCEEEEE
T ss_pred cccccccceeeecCHHHHHHHHHHHhcCCCCCCceecccccCcc-----cc----ccccccccccccccCCCCCCEEEEe
Confidence 3457899999999999996664 33 3 322222111000 00 0000001111223344568899999
Q ss_pred CCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEeEEEeecCCC
Q 024012 192 GLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVDVAKTTP 266 (274)
Q Consensus 192 nLp~~~te~~L~~~F~~fG~i~~v~i~~d~~~g~~rG~aFV~F~s~~~A~~Ai~~l~g~~l~G~~l~V~~a~~~~ 266 (274)
|||+++|+++|+++|++||.|.+++++++ ++|||||+|.+.++|.+|+..|||..++|++|+|+||++++
T Consensus 80 nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 149 (150)
T 2i2y_A 80 NLGNNGNKTELERAFGYYGPLRSVWVARN-----PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELSNGEK 149 (150)
T ss_dssp SCCSCCSCHHHHHHHHHHSCEEEEEECSS-----SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEECCCCC
T ss_pred CCCCCCCHHHHHHHHHhhCCEEEEEEeeC-----CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcCCCC
Confidence 99999999999999999999999999876 58999999999999999999999999999999999998875
No 48
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.88 E-value=9e-22 Score=143.65 Aligned_cols=85 Identities=27% Similarity=0.594 Sum_probs=80.9
Q ss_pred CccccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEeEEEe
Q 024012 182 QIKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVDV 261 (274)
Q Consensus 182 ~~~~~~lfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~d~~~g~~rG~aFV~F~s~~~A~~Ai~~l~g~~l~G~~l~V~~ 261 (274)
..+.++|||+|||+.+++++|+++|++||.|.++.|+.++ +|.++|||||+|.+.++|.+|++.|||..++|++|+|.|
T Consensus 14 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 92 (100)
T 2do4_A 14 SLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNR-AGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVAI 92 (100)
T ss_dssp CCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 3457899999999999999999999999999999999998 999999999999999999999999999999999999999
Q ss_pred ecCCCC
Q 024012 262 AKTTPK 267 (274)
Q Consensus 262 a~~~~~ 267 (274)
|++++.
T Consensus 93 a~~~~~ 98 (100)
T 2do4_A 93 SNSGPS 98 (100)
T ss_dssp CCCCSC
T ss_pred CCCCCC
Confidence 998764
No 49
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.88 E-value=8.5e-22 Score=145.04 Aligned_cols=88 Identities=27% Similarity=0.383 Sum_probs=82.1
Q ss_pred CccccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCC---EEeE
Q 024012 182 QIKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIING---WMIV 258 (274)
Q Consensus 182 ~~~~~~lfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~d~~~g~~rG~aFV~F~s~~~A~~Ai~~l~g~~l~G---~~l~ 258 (274)
....++|||+|||+.+++++|+++|++||.|.++.|++++ +|.++|||||+|.+.++|++|++.|||..+.| ++|+
T Consensus 12 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~ 90 (105)
T 2dnh_A 12 GGRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGP-DGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLV 90 (105)
T ss_dssp CCCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECS-SSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEE
Confidence 3458999999999999999999999999999999999998 89999999999999999999999999999998 9999
Q ss_pred EEeecCCCCCCC
Q 024012 259 VDVAKTTPKYSR 270 (274)
Q Consensus 259 V~~a~~~~~~~~ 270 (274)
|.||++++.+..
T Consensus 91 V~~a~~~~~~~~ 102 (105)
T 2dnh_A 91 VKFADTDKESGP 102 (105)
T ss_dssp EEESCSSCCCSC
T ss_pred EEECccCcccCC
Confidence 999998875543
No 50
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.88 E-value=4.9e-22 Score=144.45 Aligned_cols=88 Identities=31% Similarity=0.537 Sum_probs=81.6
Q ss_pred cccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCC---CCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEeEEE
Q 024012 184 KTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKI---SKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVD 260 (274)
Q Consensus 184 ~~~~lfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~d~~---~g~~rG~aFV~F~s~~~A~~Ai~~l~g~~l~G~~l~V~ 260 (274)
+.++|||+|||+++++++|+++|++||.|..+.|.+++. ++.++|||||+|.+.++|++|++.|||..++|++|+|+
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 83 (98)
T 2cpf_A 4 GSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEVR 83 (98)
T ss_dssp CCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEE
Confidence 478999999999999999999999999999999999876 66899999999999999999999999999999999999
Q ss_pred eecCCCCCCCC
Q 024012 261 VAKTTPKYSRG 271 (274)
Q Consensus 261 ~a~~~~~~~~~ 271 (274)
+|+++.+....
T Consensus 84 ~a~~~~~~~~~ 94 (98)
T 2cpf_A 84 ISERATKPASG 94 (98)
T ss_dssp CSSCSSCCCCC
T ss_pred EccCCCCCCCC
Confidence 99988755443
No 51
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.88 E-value=4.6e-22 Score=144.15 Aligned_cols=84 Identities=20% Similarity=0.475 Sum_probs=80.4
Q ss_pred cccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEeEEEeec
Q 024012 184 KTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVDVAK 263 (274)
Q Consensus 184 ~~~~lfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~d~~~g~~rG~aFV~F~s~~~A~~Ai~~l~g~~l~G~~l~V~~a~ 263 (274)
++++|||+|||..+++++|+++|++||.|.++++++++.+|.++|||||+|.+.++|.+|++.|||..++|+.|+|++|+
T Consensus 1 P~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 80 (96)
T 2x1f_A 1 PSRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSS 80 (96)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcC
Confidence 36799999999999999999999999999999999999899999999999999999999999999999999999999999
Q ss_pred CCCC
Q 024012 264 TTPK 267 (274)
Q Consensus 264 ~~~~ 267 (274)
+++.
T Consensus 81 ~~~~ 84 (96)
T 2x1f_A 81 NSDI 84 (96)
T ss_dssp CSSG
T ss_pred CCCC
Confidence 8753
No 52
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.88 E-value=4.6e-22 Score=158.52 Aligned_cols=87 Identities=31% Similarity=0.441 Sum_probs=81.1
Q ss_pred CCccccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEeEEE
Q 024012 181 TQIKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVD 260 (274)
Q Consensus 181 ~~~~~~~lfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~d~~~g~~rG~aFV~F~s~~~A~~Ai~~l~g~~l~G~~l~V~ 260 (274)
...+.++|||+|||+.+++++|+++|++||.|..|.|+.++.+|.++|||||+|.+.++|.+||..|||..|.|++|.|.
T Consensus 68 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 147 (165)
T 1rk8_A 68 RSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVD 147 (165)
T ss_dssp CCC-CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 34557899999999999999999999999999999999999899999999999999999999999999999999999999
Q ss_pred eecCCCC
Q 024012 261 VAKTTPK 267 (274)
Q Consensus 261 ~a~~~~~ 267 (274)
||.+++.
T Consensus 148 ~a~~~~~ 154 (165)
T 1rk8_A 148 WCFVKGP 154 (165)
T ss_dssp ESEECC-
T ss_pred EecCCCC
Confidence 9998753
No 53
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.87 E-value=7.2e-22 Score=144.96 Aligned_cols=88 Identities=31% Similarity=0.558 Sum_probs=82.1
Q ss_pred CccccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEeEEEe
Q 024012 182 QIKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVDV 261 (274)
Q Consensus 182 ~~~~~~lfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~d~~~g~~rG~aFV~F~s~~~A~~Ai~~l~g~~l~G~~l~V~~ 261 (274)
..+.++|||+|||+.+|+++|+++|++||.|.++.|+.+ +|.++|||||+|.+.++|.+|++.|||..+.|++|+|.|
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~--~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 89 (103)
T 2d9p_A 12 RYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVAL 89 (103)
T ss_dssp CSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC--SSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC--CCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 346889999999999999999999999999999999998 899999999999999999999999999999999999999
Q ss_pred ecCCCCCCCC
Q 024012 262 AKTTPKYSRG 271 (274)
Q Consensus 262 a~~~~~~~~~ 271 (274)
|++++.....
T Consensus 90 a~~~~~~~~~ 99 (103)
T 2d9p_A 90 AQRKEERQSG 99 (103)
T ss_dssp CSSCCCCCCC
T ss_pred ecccccCCCC
Confidence 9998765443
No 54
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.87 E-value=3.3e-22 Score=147.49 Aligned_cols=92 Identities=26% Similarity=0.404 Sum_probs=84.8
Q ss_pred CCccccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcee---CCEEe
Q 024012 181 TQIKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKII---NGWMI 257 (274)
Q Consensus 181 ~~~~~~~lfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~d~~~g~~rG~aFV~F~s~~~A~~Ai~~l~g~~l---~G~~l 257 (274)
.....++|||+|||.++++++|+++|++||.|.+|+|++|+.+|.++|||||+|.+.++|.+|++.|||..+ .|++|
T Consensus 9 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l 88 (106)
T 2dgp_A 9 KDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPI 88 (106)
T ss_dssp CCTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceE
Confidence 344578999999999999999999999999999999999998999999999999999999999999999998 89999
Q ss_pred EEEeecCCCCCCCCC
Q 024012 258 VVDVAKTTPKYSRGR 272 (274)
Q Consensus 258 ~V~~a~~~~~~~~~r 272 (274)
+|.+|+++.+..++.
T Consensus 89 ~v~~a~~~~~~~~~~ 103 (106)
T 2dgp_A 89 QVKPADSESRGGSGP 103 (106)
T ss_dssp EEEECCCCSCCCCCC
T ss_pred EEEECCcccccCCCC
Confidence 999999987655543
No 55
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.87 E-value=4.7e-22 Score=146.70 Aligned_cols=86 Identities=29% Similarity=0.466 Sum_probs=81.6
Q ss_pred CccccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEeEEEe
Q 024012 182 QIKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVDV 261 (274)
Q Consensus 182 ~~~~~~lfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~d~~~g~~rG~aFV~F~s~~~A~~Ai~~l~g~~l~G~~l~V~~ 261 (274)
...+++|||+|||.++++++|+++|++||.|.++.++.++.+|.++|||||+|.+.++|++|+..|||..++|+.|+|+|
T Consensus 20 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 99 (106)
T 1p27_B 20 SVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDW 99 (106)
T ss_dssp BTTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEe
Confidence 44578999999999999999999999999999999999998999999999999999999999999999999999999999
Q ss_pred ecCCCC
Q 024012 262 AKTTPK 267 (274)
Q Consensus 262 a~~~~~ 267 (274)
|++++.
T Consensus 100 a~~~~~ 105 (106)
T 1p27_B 100 CFVRGP 105 (106)
T ss_dssp SEESSC
T ss_pred ecCCCC
Confidence 998653
No 56
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.87 E-value=5.6e-22 Score=147.27 Aligned_cols=87 Identities=31% Similarity=0.441 Sum_probs=82.2
Q ss_pred CCccccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEeEEE
Q 024012 181 TQIKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVD 260 (274)
Q Consensus 181 ~~~~~~~lfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~d~~~g~~rG~aFV~F~s~~~A~~Ai~~l~g~~l~G~~l~V~ 260 (274)
.....++|||+|||..+++++|+++|++||.|.++.++.++.+|.++|||||+|.+.++|.+|+..|||..++|++|+|+
T Consensus 22 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 101 (110)
T 1oo0_B 22 RSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVD 101 (110)
T ss_dssp CBTTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEE
Confidence 34557899999999999999999999999999999999999899999999999999999999999999999999999999
Q ss_pred eecCCCC
Q 024012 261 VAKTTPK 267 (274)
Q Consensus 261 ~a~~~~~ 267 (274)
||++++.
T Consensus 102 ~a~~~~~ 108 (110)
T 1oo0_B 102 WCFVKGP 108 (110)
T ss_dssp ESEESSC
T ss_pred EcccCCC
Confidence 9998764
No 57
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.87 E-value=8.8e-22 Score=141.97 Aligned_cols=84 Identities=27% Similarity=0.474 Sum_probs=79.4
Q ss_pred CCCccccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEeEE
Q 024012 180 PTQIKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVV 259 (274)
Q Consensus 180 ~~~~~~~~lfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~d~~~g~~rG~aFV~F~s~~~A~~Ai~~l~g~~l~G~~l~V 259 (274)
....+.++|||+|||+.+++++|+++|++||.|.++.+++++.++.++|||||+|.+.++|++|++.|||..+.|++|+|
T Consensus 11 ~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 90 (94)
T 2e5h_A 11 GLAPSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKA 90 (94)
T ss_dssp SCCCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEE
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEE
Confidence 33455789999999999999999999999999999999999989999999999999999999999999999999999999
Q ss_pred Eeec
Q 024012 260 DVAK 263 (274)
Q Consensus 260 ~~a~ 263 (274)
+||+
T Consensus 91 ~~ak 94 (94)
T 2e5h_A 91 SIAI 94 (94)
T ss_dssp EECC
T ss_pred EecC
Confidence 9985
No 58
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.87 E-value=9.1e-22 Score=146.86 Aligned_cols=91 Identities=25% Similarity=0.394 Sum_probs=84.1
Q ss_pred CCccccEEEEcCCCCCCCHHHHHHHHhccCCeE--------EEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcee
Q 024012 181 TQIKTKKLFVTGLSFYTSEKTLRAAFEGFGELV--------EVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKII 252 (274)
Q Consensus 181 ~~~~~~~lfV~nLp~~~te~~L~~~F~~fG~i~--------~v~i~~d~~~g~~rG~aFV~F~s~~~A~~Ai~~l~g~~l 252 (274)
.....++|||+|||+.+++++|+++|++||.|. .++|+.++.+|.++|||||+|.+.++|++|++.|||..|
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~ 90 (113)
T 2cpe_A 11 EDSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDF 90 (113)
T ss_dssp CCCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEE
T ss_pred cCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCcc
Confidence 345588999999999999999999999999999 699999988999999999999999999999999999999
Q ss_pred CCEEeEEEeecCCCCCCCC
Q 024012 253 NGWMIVVDVAKTTPKYSRG 271 (274)
Q Consensus 253 ~G~~l~V~~a~~~~~~~~~ 271 (274)
.|++|+|++|++++...++
T Consensus 91 ~g~~l~V~~a~~~~~~~~~ 109 (113)
T 2cpe_A 91 QGSKLKVSLARKKPPMNSG 109 (113)
T ss_dssp TTEECEEECSSCCCCSTTC
T ss_pred CCCEEEEEECCCCCCCCCC
Confidence 9999999999998765443
No 59
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.87 E-value=1.9e-21 Score=150.44 Aligned_cols=90 Identities=27% Similarity=0.441 Sum_probs=83.8
Q ss_pred CCCccccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEeEE
Q 024012 180 PTQIKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVV 259 (274)
Q Consensus 180 ~~~~~~~~lfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~d~~~g~~rG~aFV~F~s~~~A~~Ai~~l~g~~l~G~~l~V 259 (274)
......++|||+|||.++++++|+++|++||.|++|+|++++.+|.++|||||+|.+.++|.+|++.|||..+.|++|+|
T Consensus 37 ~~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 116 (139)
T 1u6f_A 37 PEPDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKV 116 (139)
T ss_dssp CCTTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 34456789999999999999999999999999999999999989999999999999999999999999999999999999
Q ss_pred EeecCCCCCC
Q 024012 260 DVAKTTPKYS 269 (274)
Q Consensus 260 ~~a~~~~~~~ 269 (274)
++|+++.+..
T Consensus 117 ~~a~~~~~~~ 126 (139)
T 1u6f_A 117 ALAASGHQRP 126 (139)
T ss_dssp EESSCCCCCC
T ss_pred EECCCCCCCC
Confidence 9999876443
No 60
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.87 E-value=8.4e-23 Score=146.35 Aligned_cols=83 Identities=19% Similarity=0.418 Sum_probs=73.2
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhccC--CeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEeEEEeec
Q 024012 186 KKLFVTGLSFYTSEKTLRAAFEGFG--ELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVDVAK 263 (274)
Q Consensus 186 ~~lfV~nLp~~~te~~L~~~F~~fG--~i~~v~i~~d~~~g~~rG~aFV~F~s~~~A~~Ai~~l~g~~l~G~~l~V~~a~ 263 (274)
.+|||+|||+++|+++|+++|++|| .|.++++++|+.+|+++|||||+|.+.++|++|++.|||..++|+.|+|.++.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 4799999999999999999999999 99999999999999999999999999999999999999999999999999999
Q ss_pred CCCCC
Q 024012 264 TTPKY 268 (274)
Q Consensus 264 ~~~~~ 268 (274)
+++..
T Consensus 82 ~~~~~ 86 (90)
T 3p5t_L 82 KLEHH 86 (90)
T ss_dssp -----
T ss_pred CCccc
Confidence 87643
No 61
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.87 E-value=6.5e-22 Score=144.09 Aligned_cols=86 Identities=28% Similarity=0.445 Sum_probs=81.5
Q ss_pred ccccEEEEcCCCCCCCHHHHHHHHhccCCeE-EEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEE----e
Q 024012 183 IKTKKLFVTGLSFYTSEKTLRAAFEGFGELV-EVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWM----I 257 (274)
Q Consensus 183 ~~~~~lfV~nLp~~~te~~L~~~F~~fG~i~-~v~i~~d~~~g~~rG~aFV~F~s~~~A~~Ai~~l~g~~l~G~~----l 257 (274)
...++|||+|||+++++++|+++|++||.|. +++|++|+.+|.++|||||+|.+.++|++|++.|||..+.|+. |
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~l 86 (99)
T 2div_A 7 GMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRF 86 (99)
T ss_dssp SSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCEEC
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCcceeE
Confidence 4588999999999999999999999999999 9999999999999999999999999999999999999999999 9
Q ss_pred EEEeecCCCCC
Q 024012 258 VVDVAKTTPKY 268 (274)
Q Consensus 258 ~V~~a~~~~~~ 268 (274)
+|+||++....
T Consensus 87 ~v~~a~~~~~~ 97 (99)
T 2div_A 87 KLNYATYSGPS 97 (99)
T ss_dssp CEEETTCCSSS
T ss_pred EEeecCCCCCC
Confidence 99999987543
No 62
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.87 E-value=3.4e-21 Score=141.33 Aligned_cols=89 Identities=27% Similarity=0.372 Sum_probs=80.5
Q ss_pred CCCccccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEeEE
Q 024012 180 PTQIKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVV 259 (274)
Q Consensus 180 ~~~~~~~~lfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~d~~~g~~rG~aFV~F~s~~~A~~Ai~~l~g~~l~G~~l~V 259 (274)
......++|||+|||+.+++++|+++|++||.|.+|+|++++ +.++|||||+|.+.++|++|+..|||..+.|++|+|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~--~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 87 (103)
T 2cqi_A 10 EDDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEH--TSNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKV 87 (103)
T ss_dssp CCSCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCC--CSSCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEE
T ss_pred CCCCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecC--CCCCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEE
Confidence 344568999999999999999999999999999999999985 347999999999999999999999999999999999
Q ss_pred EeecCCCCCCC
Q 024012 260 DVAKTTPKYSR 270 (274)
Q Consensus 260 ~~a~~~~~~~~ 270 (274)
.||+++.....
T Consensus 88 ~~a~~~~~~~~ 98 (103)
T 2cqi_A 88 NWATTPSSQKS 98 (103)
T ss_dssp EECCCTTCCCC
T ss_pred EECCCCccccc
Confidence 99998765444
No 63
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.87 E-value=1.9e-21 Score=145.83 Aligned_cols=88 Identities=36% Similarity=0.592 Sum_probs=81.5
Q ss_pred CCCCccccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEeE
Q 024012 179 SPTQIKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIV 258 (274)
Q Consensus 179 ~~~~~~~~~lfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~d~~~g~~rG~aFV~F~s~~~A~~Ai~~l~g~~l~G~~l~ 258 (274)
.......++|||+|||+++++++|+++|++||.|.+|+|++++.++.++|||||+|.+.++|++|++.|++ .|.|++|+
T Consensus 11 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l~ 89 (116)
T 2cqd_A 11 SQKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKAN 89 (116)
T ss_dssp CCCSCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEECE
T ss_pred CcCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEEE
Confidence 34445689999999999999999999999999999999999998999999999999999999999999998 89999999
Q ss_pred EEeecCCCC
Q 024012 259 VDVAKTTPK 267 (274)
Q Consensus 259 V~~a~~~~~ 267 (274)
|++|++..+
T Consensus 90 V~~a~~~~~ 98 (116)
T 2cqd_A 90 VNLAYLGAK 98 (116)
T ss_dssp EEESTTTCC
T ss_pred EEEcccCCC
Confidence 999987643
No 64
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.87 E-value=9.4e-22 Score=143.33 Aligned_cols=84 Identities=23% Similarity=0.356 Sum_probs=79.5
Q ss_pred CCCccccEEEEcCCCCCCCHHHHHHHHhccCCeEE--------EEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCce
Q 024012 180 PTQIKTKKLFVTGLSFYTSEKTLRAAFEGFGELVE--------VKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKI 251 (274)
Q Consensus 180 ~~~~~~~~lfV~nLp~~~te~~L~~~F~~fG~i~~--------v~i~~d~~~g~~rG~aFV~F~s~~~A~~Ai~~l~g~~ 251 (274)
......++|||+|||+++++++|+++|++||.|.+ +++++|+.+|+++|||||+|.+.++|++|++.|||..
T Consensus 8 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~ 87 (99)
T 2la6_A 8 HSHSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKE 87 (99)
T ss_dssp CSCCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCB
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCE
Confidence 34456899999999999999999999999999999 9999999899999999999999999999999999999
Q ss_pred eCCEEeEEEeec
Q 024012 252 INGWMIVVDVAK 263 (274)
Q Consensus 252 l~G~~l~V~~a~ 263 (274)
++|++|+|++|+
T Consensus 88 ~~g~~l~V~~A~ 99 (99)
T 2la6_A 88 FSGNPIKVSFAT 99 (99)
T ss_dssp SSSSBCEEEECC
T ss_pred eCCcEEEEEecC
Confidence 999999999985
No 65
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.87 E-value=7e-22 Score=148.30 Aligned_cols=84 Identities=39% Similarity=0.586 Sum_probs=79.9
Q ss_pred ccccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEeEEEee
Q 024012 183 IKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVDVA 262 (274)
Q Consensus 183 ~~~~~lfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~d~~~g~~rG~aFV~F~s~~~A~~Ai~~l~g~~l~G~~l~V~~a 262 (274)
...++|||+|||.++++++|+++|++||.|++|.|..+. +|.++|||||+|.+.++|++|++.|||..++|++|+|++|
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 83 (116)
T 2fy1_A 5 DHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQA 83 (116)
T ss_dssp CSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECST-TTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEC
Confidence 347899999999999999999999999999999999998 9999999999999999999999999999999999999999
Q ss_pred cCCCC
Q 024012 263 KTTPK 267 (274)
Q Consensus 263 ~~~~~ 267 (274)
++++.
T Consensus 84 ~~~~~ 88 (116)
T 2fy1_A 84 KKPSF 88 (116)
T ss_dssp CCSSC
T ss_pred CCCCC
Confidence 98653
No 66
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.87 E-value=1.4e-21 Score=144.86 Aligned_cols=85 Identities=33% Similarity=0.578 Sum_probs=81.0
Q ss_pred CccccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEeEEEe
Q 024012 182 QIKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVDV 261 (274)
Q Consensus 182 ~~~~~~lfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~d~~~g~~rG~aFV~F~s~~~A~~Ai~~l~g~~l~G~~l~V~~ 261 (274)
..+.++|||+|||..+++++|+++|++||.|.++++++++.+|.++|||||+|.+.++|.+|++.|||..++|++|+|++
T Consensus 23 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~ 102 (108)
T 2jrs_A 23 SAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGH 102 (108)
T ss_dssp CSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 34578999999999999999999999999999999999998999999999999999999999999999999999999999
Q ss_pred ecCCC
Q 024012 262 AKTTP 266 (274)
Q Consensus 262 a~~~~ 266 (274)
|+++.
T Consensus 103 a~~k~ 107 (108)
T 2jrs_A 103 VTERT 107 (108)
T ss_dssp SCSSC
T ss_pred cccCC
Confidence 98764
No 67
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.87 E-value=5.7e-21 Score=142.66 Aligned_cols=85 Identities=21% Similarity=0.332 Sum_probs=79.6
Q ss_pred CCccccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEeEEE
Q 024012 181 TQIKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVD 260 (274)
Q Consensus 181 ~~~~~~~lfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~d~~~g~~rG~aFV~F~s~~~A~~Ai~~l~g~~l~G~~l~V~ 260 (274)
.....++|||+|||+++++++|+++|++||.|.+++|+.++ +|.++|||||+|.+.++|++|++.|||..|.|+.|+|+
T Consensus 11 ~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 89 (114)
T 2do0_A 11 AGRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDK-DGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVK 89 (114)
T ss_dssp CCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEE
Confidence 33457899999999999999999999999999999999998 69999999999999999999999999999999999999
Q ss_pred eecCCC
Q 024012 261 VAKTTP 266 (274)
Q Consensus 261 ~a~~~~ 266 (274)
+++...
T Consensus 90 ~a~~~~ 95 (114)
T 2do0_A 90 MDERAL 95 (114)
T ss_dssp ECSCCC
T ss_pred EcccCC
Confidence 998654
No 68
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=5.8e-21 Score=140.06 Aligned_cols=90 Identities=27% Similarity=0.515 Sum_probs=81.3
Q ss_pred CCCCccccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEeE
Q 024012 179 SPTQIKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIV 258 (274)
Q Consensus 179 ~~~~~~~~~lfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~d~~~g~~rG~aFV~F~s~~~A~~Ai~~l~g~~l~G~~l~ 258 (274)
.......++|||+|||+++++++|+++|++||.|.+|+|++++. .++|||||+|.+.++|++|+..|||..|+|++|+
T Consensus 9 ~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 86 (103)
T 2cq3_A 9 SESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER--GSKGFGFVTFENSADADRAREKLHGTVVEGRKIE 86 (103)
T ss_dssp SCCSCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTT--TTCCEEEEEESCHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCC--CCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence 33445689999999999999999999999999999999999863 4899999999999999999999999999999999
Q ss_pred EEeecCCCCCCC
Q 024012 259 VDVAKTTPKYSR 270 (274)
Q Consensus 259 V~~a~~~~~~~~ 270 (274)
|.+|++++....
T Consensus 87 v~~a~~~~~~~~ 98 (103)
T 2cq3_A 87 VNNATARVMTNS 98 (103)
T ss_dssp EEECCSSCCCCC
T ss_pred EEEcccCCCCCC
Confidence 999999875443
No 69
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=5.6e-21 Score=140.16 Aligned_cols=89 Identities=27% Similarity=0.470 Sum_probs=81.5
Q ss_pred CCccccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEeEEE
Q 024012 181 TQIKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVD 260 (274)
Q Consensus 181 ~~~~~~~lfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~d~~~g~~rG~aFV~F~s~~~A~~Ai~~l~g~~l~G~~l~V~ 260 (274)
...+.++|||+|||+.+++++|+++|++||.|..|.|+.++.+|.++|||||+|.+.++|++|+. ++..++|++|.|.
T Consensus 11 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~l~v~ 88 (103)
T 2cqg_A 11 AVQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QRHMIDGRWCDCK 88 (103)
T ss_dssp CCCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH--SCEEETTEEEEEE
T ss_pred ccCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH--cCCeeCCeEEEEE
Confidence 34457899999999999999999999999999999999999899999999999999999999997 5789999999999
Q ss_pred eecCCCCCCCC
Q 024012 261 VAKTTPKYSRG 271 (274)
Q Consensus 261 ~a~~~~~~~~~ 271 (274)
++.++....+.
T Consensus 89 ~a~~~~~~~~~ 99 (103)
T 2cqg_A 89 LPNSKQSQDSG 99 (103)
T ss_dssp CCCTTCCCCCS
T ss_pred ecCCCCcCCCC
Confidence 99998765543
No 70
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=2.1e-21 Score=140.76 Aligned_cols=84 Identities=19% Similarity=0.195 Sum_probs=77.9
Q ss_pred ccccEEEEcCCCCCCCHHHHH----HHHhccCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEeE
Q 024012 183 IKTKKLFVTGLSFYTSEKTLR----AAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIV 258 (274)
Q Consensus 183 ~~~~~lfV~nLp~~~te~~L~----~~F~~fG~i~~v~i~~d~~~g~~rG~aFV~F~s~~~A~~Ai~~l~g~~l~G~~l~ 258 (274)
...++|||+|||+.+++++|+ ++|++||.|.+|+|++|+.+ +|||||+|.+.++|++|++.|||..++|++|+
T Consensus 7 ~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~---rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~ 83 (96)
T 2dgx_A 7 GNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDY---QLKAVVQMENLQDAIGAVNSLHRYKIGSKKIL 83 (96)
T ss_dssp SSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCST---TCCEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCC---CeEEEEEECCHHHHHHHHHHhCCCEECCeEEE
Confidence 347899999999999999999 99999999999999999754 89999999999999999999999999999999
Q ss_pred EEeecCCCCCC
Q 024012 259 VDVAKTTPKYS 269 (274)
Q Consensus 259 V~~a~~~~~~~ 269 (274)
|++|++.+...
T Consensus 84 V~~a~~~~~~~ 94 (96)
T 2dgx_A 84 VSLATGASGPS 94 (96)
T ss_dssp EEECCCSSCCC
T ss_pred EEEcCCCCCCC
Confidence 99999876544
No 71
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.86 E-value=1.4e-21 Score=148.17 Aligned_cols=91 Identities=26% Similarity=0.472 Sum_probs=84.2
Q ss_pred ccccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEeEEEee
Q 024012 183 IKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVDVA 262 (274)
Q Consensus 183 ~~~~~lfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~d~~~g~~rG~aFV~F~s~~~A~~Ai~~l~g~~l~G~~l~V~~a 262 (274)
...++|||+|||.++|+++|+++|++||.|.++.+++++.+|.++|||||+|.+.++|.+|+ .|||..|+|+.|+|+++
T Consensus 34 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a 112 (124)
T 2jwn_A 34 IDKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLPK 112 (124)
T ss_dssp HHHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEEC
Confidence 34789999999999999999999999999999999999889999999999999999999999 89999999999999999
Q ss_pred cCCCCCCCCCCC
Q 024012 263 KTTPKYSRGRPR 274 (274)
Q Consensus 263 ~~~~~~~~~r~r 274 (274)
++.......++|
T Consensus 113 ~~~~~~~~~~~R 124 (124)
T 2jwn_A 113 RTNMPGISSTDR 124 (124)
T ss_dssp SCCCSSCCCSCC
T ss_pred CCCCCCCCCCCC
Confidence 988765555544
No 72
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.86 E-value=2.2e-22 Score=147.02 Aligned_cols=83 Identities=20% Similarity=0.372 Sum_probs=79.6
Q ss_pred cccEEEEcCCCC------CCCHHHHHHHHhccCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCC-EE
Q 024012 184 KTKKLFVTGLSF------YTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIING-WM 256 (274)
Q Consensus 184 ~~~~lfV~nLp~------~~te~~L~~~F~~fG~i~~v~i~~d~~~g~~rG~aFV~F~s~~~A~~Ai~~l~g~~l~G-~~ 256 (274)
.+++|||+|||. .+++++|+++|++||.|.+++|++|+.||+++|||||+|.+.++|++|++.|||..+.| ++
T Consensus 5 ~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r~ 84 (100)
T 3ns6_A 5 SDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKHR 84 (100)
T ss_dssp GGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSCB
T ss_pred cCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCeE
Confidence 378999999999 99999999999999999999999999999999999999999999999999999999999 99
Q ss_pred eEEEeecCCC
Q 024012 257 IVVDVAKTTP 266 (274)
Q Consensus 257 l~V~~a~~~~ 266 (274)
|+|.+|.+..
T Consensus 85 l~V~~a~~~~ 94 (100)
T 3ns6_A 85 LFLYTMKDVE 94 (100)
T ss_dssp CEEEESHHHH
T ss_pred EEEEECchhh
Confidence 9999998754
No 73
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.86 E-value=1.5e-21 Score=138.90 Aligned_cols=83 Identities=24% Similarity=0.460 Sum_probs=78.4
Q ss_pred cccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCC-cceEEEEEeCCHHHHHHHHHHhCCceeCCEEeEEEee
Q 024012 184 KTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKR-SKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVDVA 262 (274)
Q Consensus 184 ~~~~lfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~d~~~g~-~rG~aFV~F~s~~~A~~Ai~~l~g~~l~G~~l~V~~a 262 (274)
..++|||+|||.++++++|+++|++||.|.++.++.++.++. ++|||||+|.+.++|++|++.|||..++|+.|+|+++
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 82 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAV 82 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEEC
Confidence 368999999999999999999999999999999999987766 8999999999999999999999999999999999999
Q ss_pred cCCC
Q 024012 263 KTTP 266 (274)
Q Consensus 263 ~~~~ 266 (274)
.++.
T Consensus 83 ~~~~ 86 (88)
T 4a8x_A 83 LAPW 86 (88)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 8764
No 74
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.86 E-value=1.6e-21 Score=143.54 Aligned_cols=90 Identities=27% Similarity=0.487 Sum_probs=83.2
Q ss_pred CCccccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEeEEE
Q 024012 181 TQIKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVD 260 (274)
Q Consensus 181 ~~~~~~~lfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~d~~~g~~rG~aFV~F~s~~~A~~Ai~~l~g~~l~G~~l~V~ 260 (274)
.....++|||+|||+.+++++|+++|++||.|.+|.|++++.++.++|||||+|.+.++|++|+.. +|..|+|+.|.|+
T Consensus 12 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~V~ 90 (105)
T 2dh8_A 12 GADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNIDPK 90 (105)
T ss_dssp CSSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTEEEBCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCEEEEEE
Confidence 345689999999999999999999999999999999999998999999999999999999999988 9999999999999
Q ss_pred eecCCCCCCCC
Q 024012 261 VAKTTPKYSRG 271 (274)
Q Consensus 261 ~a~~~~~~~~~ 271 (274)
+|+++.....+
T Consensus 91 ~a~~~~~~~~~ 101 (105)
T 2dh8_A 91 PCTPRGMQPSG 101 (105)
T ss_dssp CSCCSSCCTTC
T ss_pred EccCCCCCCCC
Confidence 99988754443
No 75
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.86 E-value=2.2e-21 Score=139.31 Aligned_cols=85 Identities=27% Similarity=0.413 Sum_probs=79.7
Q ss_pred ccccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEeEEEee
Q 024012 183 IKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVDVA 262 (274)
Q Consensus 183 ~~~~~lfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~d~~~g~~rG~aFV~F~s~~~A~~Ai~~l~g~~l~G~~l~V~~a 262 (274)
.+.++|||+|||+++++++|+++|++||.|..+++.++ +|.++|||||+|.+.++|++|++.|||..++|++|+|+++
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~--~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a 83 (92)
T 2dgv_A 6 SGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME--NGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRID 83 (92)
T ss_dssp SSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEES--SSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEEC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcc--CCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 45789999999999999999999999999999999985 7899999999999999999999999999999999999999
Q ss_pred cCCCCCC
Q 024012 263 KTTPKYS 269 (274)
Q Consensus 263 ~~~~~~~ 269 (274)
++.....
T Consensus 84 ~~~~~~~ 90 (92)
T 2dgv_A 84 RNASGPS 90 (92)
T ss_dssp SCCSSCC
T ss_pred CCCCCCC
Confidence 9876543
No 76
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.86 E-value=2.3e-21 Score=138.32 Aligned_cols=82 Identities=27% Similarity=0.539 Sum_probs=78.6
Q ss_pred cccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEeEEEeec
Q 024012 184 KTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVDVAK 263 (274)
Q Consensus 184 ~~~~lfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~d~~~g~~rG~aFV~F~s~~~A~~Ai~~l~g~~l~G~~l~V~~a~ 263 (274)
..++|||+|||+++++++|+++|++||.|.++++++++.+|.++|||||+|.+.++|++|+ .|||..+.|++|+|.+++
T Consensus 5 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a~ 83 (89)
T 3ucg_A 5 DARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPKR 83 (89)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEETT
T ss_pred cCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEcc
Confidence 4689999999999999999999999999999999999989999999999999999999999 999999999999999998
Q ss_pred CCC
Q 024012 264 TTP 266 (274)
Q Consensus 264 ~~~ 266 (274)
++.
T Consensus 84 ~~~ 86 (89)
T 3ucg_A 84 TNR 86 (89)
T ss_dssp TTS
T ss_pred CCC
Confidence 753
No 77
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.86 E-value=1.4e-21 Score=143.65 Aligned_cols=86 Identities=24% Similarity=0.334 Sum_probs=80.9
Q ss_pred CccccEEEEcCCCCCCCHHHHHHHHhc-cCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCce-eCCEEeEE
Q 024012 182 QIKTKKLFVTGLSFYTSEKTLRAAFEG-FGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKI-INGWMIVV 259 (274)
Q Consensus 182 ~~~~~~lfV~nLp~~~te~~L~~~F~~-fG~i~~v~i~~d~~~g~~rG~aFV~F~s~~~A~~Ai~~l~g~~-l~G~~l~V 259 (274)
..+.++|||+|||+++|+++|+++|++ ||.|.+++|++|+ +|.++|||||+|.+.++|.+|++.|||.. ++|++|+|
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v 84 (104)
T 2dhg_A 6 SGPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRL 84 (104)
T ss_dssp SSCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECT-TCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEEE
Confidence 345789999999999999999999999 9999999999999 99999999999999999999999999999 99999999
Q ss_pred EeecCCCCC
Q 024012 260 DVAKTTPKY 268 (274)
Q Consensus 260 ~~a~~~~~~ 268 (274)
++|+++...
T Consensus 85 ~~a~~~~~~ 93 (104)
T 2dhg_A 85 SVAIPKASR 93 (104)
T ss_dssp CBCCCCCSC
T ss_pred EEccCCCcC
Confidence 999887543
No 78
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.86 E-value=2.9e-21 Score=139.49 Aligned_cols=83 Identities=25% Similarity=0.360 Sum_probs=78.3
Q ss_pred CCccccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEeEEE
Q 024012 181 TQIKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVD 260 (274)
Q Consensus 181 ~~~~~~~lfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~d~~~g~~rG~aFV~F~s~~~A~~Ai~~l~g~~l~G~~l~V~ 260 (274)
.....++|||+|||+.+++++|+++|++||.|.+++|++++ +|.++|||||+|.+.++|.+|++.|||..+.|++|+|+
T Consensus 12 ~~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 90 (95)
T 2ywk_A 12 QEEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDR-EGKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVS 90 (95)
T ss_dssp CTTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEE
Confidence 34568899999999999999999999999999999999998 49999999999999999999999999999999999999
Q ss_pred eecC
Q 024012 261 VAKT 264 (274)
Q Consensus 261 ~a~~ 264 (274)
||+.
T Consensus 91 ~a~~ 94 (95)
T 2ywk_A 91 GPSS 94 (95)
T ss_dssp CCCC
T ss_pred EcCC
Confidence 9874
No 79
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.86 E-value=4.5e-21 Score=144.18 Aligned_cols=84 Identities=25% Similarity=0.408 Sum_probs=78.8
Q ss_pred CCCccccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEeEE
Q 024012 180 PTQIKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVV 259 (274)
Q Consensus 180 ~~~~~~~~lfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~d~~~g~~rG~aFV~F~s~~~A~~Ai~~l~g~~l~G~~l~V 259 (274)
......++|||+|||+++++++|+++|++||.|.+++|++++.+|+++|||||+|.+.++|++|++.|||..++|++|+|
T Consensus 35 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 114 (118)
T 2khc_A 35 IEGPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKV 114 (118)
T ss_dssp CCCCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 33456789999999999999999999999999999999999889999999999999999999999999999999999999
Q ss_pred Eeec
Q 024012 260 DVAK 263 (274)
Q Consensus 260 ~~a~ 263 (274)
+|++
T Consensus 115 ~~ak 118 (118)
T 2khc_A 115 QLKK 118 (118)
T ss_dssp EEC-
T ss_pred EecC
Confidence 9985
No 80
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=2.7e-21 Score=145.00 Aligned_cols=90 Identities=30% Similarity=0.545 Sum_probs=83.3
Q ss_pred CccccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEeEEEe
Q 024012 182 QIKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVDV 261 (274)
Q Consensus 182 ~~~~~~lfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~d~~~g~~rG~aFV~F~s~~~A~~Ai~~l~g~~l~G~~l~V~~ 261 (274)
....++|||+|||+++++++|+++|++||.|..|.|++++.+|.++|||||+|.+.++|++||+. +|..|+|++|+|.+
T Consensus 24 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V~~ 102 (116)
T 1x4b_A 24 KEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPKR 102 (116)
T ss_dssp HHHHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEEEC
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEEEE
Confidence 44578999999999999999999999999999999999998999999999999999999999977 99999999999999
Q ss_pred ecCCCCCCCCC
Q 024012 262 AKTTPKYSRGR 272 (274)
Q Consensus 262 a~~~~~~~~~r 272 (274)
|+++....+++
T Consensus 103 a~~~~~~~~~~ 113 (116)
T 1x4b_A 103 AVAREESGSGP 113 (116)
T ss_dssp CSSCCCCCCSC
T ss_pred CCCCccCCCCC
Confidence 99987655443
No 81
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=9.8e-21 Score=140.34 Aligned_cols=90 Identities=17% Similarity=0.344 Sum_probs=80.5
Q ss_pred CCCccccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEeEE
Q 024012 180 PTQIKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVV 259 (274)
Q Consensus 180 ~~~~~~~~lfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~d~~~g~~rG~aFV~F~s~~~A~~Ai~~l~g~~l~G~~l~V 259 (274)
......++|||+|||+++|+++|+++|++||.|..+.|..+ +.++|||||+|.+.++|++|++.|||..|.|++|+|
T Consensus 17 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 93 (109)
T 1x4a_A 17 PAGNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNR---RGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRV 93 (109)
T ss_dssp CCCCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCS---SSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEE
Confidence 33445789999999999999999999999999999999654 568999999999999999999999999999999999
Q ss_pred EeecCCCCCCCCC
Q 024012 260 DVAKTTPKYSRGR 272 (274)
Q Consensus 260 ~~a~~~~~~~~~r 272 (274)
+||+++++..+++
T Consensus 94 ~~a~~~~~~~~~~ 106 (109)
T 1x4a_A 94 EFPRSGRGTGSGP 106 (109)
T ss_dssp ECCCCCCCCCCCS
T ss_pred EEcccCCCCCCCC
Confidence 9999987655543
No 82
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.86 E-value=1.3e-21 Score=148.76 Aligned_cols=87 Identities=29% Similarity=0.460 Sum_probs=81.7
Q ss_pred CCccccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEeEEE
Q 024012 181 TQIKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVD 260 (274)
Q Consensus 181 ~~~~~~~lfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~d~~~g~~rG~aFV~F~s~~~A~~Ai~~l~g~~l~G~~l~V~ 260 (274)
.....++|||+|||+.+|+++|+++|++||.|.+|.|+.++.++.++|||||+|.+.++|++|++.|||..|+|+.|.|+
T Consensus 18 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 97 (126)
T 3ex7_B 18 RSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVD 97 (126)
T ss_dssp CCSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEE
Confidence 33457899999999999999999999999999999999999899999999999999999999999999999999999999
Q ss_pred eecCCCC
Q 024012 261 VAKTTPK 267 (274)
Q Consensus 261 ~a~~~~~ 267 (274)
||+++..
T Consensus 98 ~a~~~~~ 104 (126)
T 3ex7_B 98 WCFVRGP 104 (126)
T ss_dssp ESEESSS
T ss_pred EecCCCC
Confidence 9987653
No 83
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.85 E-value=6.7e-21 Score=140.66 Aligned_cols=83 Identities=27% Similarity=0.412 Sum_probs=78.7
Q ss_pred CCccccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEeEEE
Q 024012 181 TQIKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVD 260 (274)
Q Consensus 181 ~~~~~~~lfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~d~~~g~~rG~aFV~F~s~~~A~~Ai~~l~g~~l~G~~l~V~ 260 (274)
...+.++|||+|||+.+++++|+++|++||.|.+++|++++ +|.++|||||+|.+.++|++|++.|||..+.|++|+|+
T Consensus 25 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 103 (107)
T 3ulh_A 25 GVETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDR-SGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQ 103 (107)
T ss_dssp CCCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEE
Confidence 34558899999999999999999999999999999999999 99999999999999999999999999999999999999
Q ss_pred eecC
Q 024012 261 VAKT 264 (274)
Q Consensus 261 ~a~~ 264 (274)
+|.+
T Consensus 104 ~a~s 107 (107)
T 3ulh_A 104 LVTS 107 (107)
T ss_dssp EECC
T ss_pred EeCC
Confidence 9863
No 84
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.85 E-value=6e-21 Score=135.58 Aligned_cols=80 Identities=34% Similarity=0.552 Sum_probs=75.6
Q ss_pred CccccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEeEEEe
Q 024012 182 QIKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVDV 261 (274)
Q Consensus 182 ~~~~~~lfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~d~~~g~~rG~aFV~F~s~~~A~~Ai~~l~g~~l~G~~l~V~~ 261 (274)
..+.++|||+|||+++++++|+++|++||.|.++++++++.+|.++|||||+|.+.++|.+|+ .+++..++|++|.|++
T Consensus 8 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~~~~~~~~g~~i~v~~ 86 (87)
T 3s7r_A 8 EEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVL-DQKEHRLDGRVIDPKK 86 (87)
T ss_dssp CSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHH-HSSCEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHH-HhCCCEECCEEEEEEe
Confidence 445889999999999999999999999999999999999989999999999999999999999 5588999999999998
Q ss_pred e
Q 024012 262 A 262 (274)
Q Consensus 262 a 262 (274)
|
T Consensus 87 A 87 (87)
T 3s7r_A 87 A 87 (87)
T ss_dssp C
T ss_pred C
Confidence 6
No 85
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.85 E-value=2.7e-21 Score=140.49 Aligned_cols=84 Identities=14% Similarity=0.201 Sum_probs=79.4
Q ss_pred ccccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEeEEEee
Q 024012 183 IKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVDVA 262 (274)
Q Consensus 183 ~~~~~lfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~d~~~g~~rG~aFV~F~s~~~A~~Ai~~l~g~~l~G~~l~V~~a 262 (274)
...++|||+|||+++++++|+++|++||.|..+.++.++.+|+++|||||+|.+.++|++|++.|||..|+|++|+|+++
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a 92 (98)
T 2cqp_A 13 PGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVLG 92 (98)
T ss_dssp CSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEc
Confidence 44789999999999999999999999999999999999889999999999999999999999999999999999999999
Q ss_pred cCCC
Q 024012 263 KTTP 266 (274)
Q Consensus 263 ~~~~ 266 (274)
..+.
T Consensus 93 ~~~~ 96 (98)
T 2cqp_A 93 SGPS 96 (98)
T ss_dssp SCSS
T ss_pred CCCC
Confidence 8654
No 86
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.85 E-value=4.3e-21 Score=142.84 Aligned_cols=88 Identities=20% Similarity=0.294 Sum_probs=80.2
Q ss_pred CccccEEEEcCCCCCCCHHHHH---HHHhccCCeEEEEEEecCCCC---CcceEEEEEeCCHHHHHHHHHHhCCceeCCE
Q 024012 182 QIKTKKLFVTGLSFYTSEKTLR---AAFEGFGELVEVKIIMDKISK---RSKGYAFIEYTTEEAASAALKEMNGKIINGW 255 (274)
Q Consensus 182 ~~~~~~lfV~nLp~~~te~~L~---~~F~~fG~i~~v~i~~d~~~g---~~rG~aFV~F~s~~~A~~Ai~~l~g~~l~G~ 255 (274)
....++|||+|||+.+++++|+ ++|++||.|.++.|++++.++ .++|||||+|.+.++|++|++.|||..|+|+
T Consensus 12 ~~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr 91 (111)
T 2cpi_A 12 VVQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGR 91 (111)
T ss_dssp CCCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTE
T ss_pred ccCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECCE
Confidence 3457899999999999999999 999999999999999987654 5669999999999999999999999999999
Q ss_pred EeEEEeecCCCCCC
Q 024012 256 MIVVDVAKTTPKYS 269 (274)
Q Consensus 256 ~l~V~~a~~~~~~~ 269 (274)
+|+|+||++++...
T Consensus 92 ~l~V~~a~~k~~~~ 105 (111)
T 2cpi_A 92 TLKASLGTTKYCSY 105 (111)
T ss_dssp EEEEESCCCCSCSS
T ss_pred EEEEEecccccccc
Confidence 99999999987543
No 87
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=1.1e-21 Score=144.09 Aligned_cols=86 Identities=27% Similarity=0.565 Sum_probs=81.6
Q ss_pred CccccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEeEEEe
Q 024012 182 QIKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVDV 261 (274)
Q Consensus 182 ~~~~~~lfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~d~~~g~~rG~aFV~F~s~~~A~~Ai~~l~g~~l~G~~l~V~~ 261 (274)
....++|||+|||+.+++++|+++|++||.|.++.+++++.+|.++|||||+|.+.++|++|++.|||..++|+.|+|+|
T Consensus 5 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 84 (104)
T 1p1t_A 5 DRSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDN 84 (104)
T ss_dssp HHHHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEE
T ss_pred CCCccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEe
Confidence 34578999999999999999999999999999999999998999999999999999999999999999999999999999
Q ss_pred ecCCCC
Q 024012 262 AKTTPK 267 (274)
Q Consensus 262 a~~~~~ 267 (274)
|+++..
T Consensus 85 a~~~~~ 90 (104)
T 1p1t_A 85 AASEKN 90 (104)
T ss_dssp TTCTTH
T ss_pred CCCccc
Confidence 998753
No 88
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.85 E-value=7.2e-21 Score=139.07 Aligned_cols=88 Identities=31% Similarity=0.433 Sum_probs=79.2
Q ss_pred CCccccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEeEEE
Q 024012 181 TQIKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVD 260 (274)
Q Consensus 181 ~~~~~~~lfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~d~~~g~~rG~aFV~F~s~~~A~~Ai~~l~g~~l~G~~l~V~ 260 (274)
...+.++|||+|||+.+++++|+++|++||.| +++.+ .+++++|||||+|.+.++|++|+..|||..|.|+.|+|+
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 86 (101)
T 2fc9_A 11 WSGESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQN-QNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLE 86 (101)
T ss_dssp CSCCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBC-SSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEEC-CCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEE
Confidence 44568999999999999999999999999987 56666 489999999999999999999999999999999999999
Q ss_pred eecCCCCCCCCC
Q 024012 261 VAKTTPKYSRGR 272 (274)
Q Consensus 261 ~a~~~~~~~~~r 272 (274)
|++++++..+++
T Consensus 87 ~a~~~~~~~~~~ 98 (101)
T 2fc9_A 87 LQGPRGSPNSGP 98 (101)
T ss_dssp ECSSCCCCCCCS
T ss_pred EcCCCCCCCCCC
Confidence 999987665544
No 89
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.85 E-value=1.8e-21 Score=148.71 Aligned_cols=86 Identities=35% Similarity=0.548 Sum_probs=81.5
Q ss_pred CCccccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEeEEE
Q 024012 181 TQIKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVD 260 (274)
Q Consensus 181 ~~~~~~~lfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~d~~~g~~rG~aFV~F~s~~~A~~Ai~~l~g~~l~G~~l~V~ 260 (274)
...+.++|||+|||+++++++|+++|++||.|..|+|++|+.+|.++|||||+|.+.++|++|++.|||..|+|++|+|+
T Consensus 42 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V~ 121 (129)
T 2kxn_B 42 NPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVD 121 (129)
T ss_dssp CCCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEES
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 34457899999999999999999999999999999999999899999999999999999999999999999999999999
Q ss_pred eecCCC
Q 024012 261 VAKTTP 266 (274)
Q Consensus 261 ~a~~~~ 266 (274)
||++++
T Consensus 122 ~a~~~~ 127 (129)
T 2kxn_B 122 FSITKR 127 (129)
T ss_dssp CCSSSS
T ss_pred EecCCC
Confidence 999865
No 90
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.85 E-value=4.1e-21 Score=142.48 Aligned_cols=87 Identities=26% Similarity=0.439 Sum_probs=77.8
Q ss_pred CCccccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEeEEE
Q 024012 181 TQIKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVD 260 (274)
Q Consensus 181 ~~~~~~~lfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~d~~~g~~rG~aFV~F~s~~~A~~Ai~~l~g~~l~G~~l~V~ 260 (274)
.....++|||+|||+++++++|+++|++||.|.+|+|++++.+|.++|||||+|.+.++|.+|+..+ |..++|+.|+|.
T Consensus 21 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~g~~l~V~ 99 (109)
T 2rs2_A 21 MGSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELDSKTIDPK 99 (109)
T ss_dssp -----CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEETTEEEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCCCEEEEEE
Confidence 3445789999999999999999999999999999999999989999999999999999999999876 599999999999
Q ss_pred eecCCCCC
Q 024012 261 VAKTTPKY 268 (274)
Q Consensus 261 ~a~~~~~~ 268 (274)
+|.+++..
T Consensus 100 ~a~~~~~~ 107 (109)
T 2rs2_A 100 VAFPRRAQ 107 (109)
T ss_dssp ECCCCCCC
T ss_pred EccCCCCC
Confidence 99987643
No 91
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.85 E-value=1.2e-20 Score=135.23 Aligned_cols=83 Identities=24% Similarity=0.419 Sum_probs=78.4
Q ss_pred CccccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEeEEEe
Q 024012 182 QIKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVDV 261 (274)
Q Consensus 182 ~~~~~~lfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~d~~~g~~rG~aFV~F~s~~~A~~Ai~~l~g~~l~G~~l~V~~ 261 (274)
....++|||+|||+++++++|+++|++| .|.+++|+++ .+|+++|||||+|.+.++|.+|+. |||..++|+.|+|.+
T Consensus 7 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~-~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v~~ 83 (91)
T 2dgw_A 7 GTTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRN-AHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEVFR 83 (91)
T ss_dssp CCCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEEC-TTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEEEE
T ss_pred CCCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEEC-CCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEEEE
Confidence 3457899999999999999999999999 9999999999 699999999999999999999998 999999999999999
Q ss_pred ecCCCC
Q 024012 262 AKTTPK 267 (274)
Q Consensus 262 a~~~~~ 267 (274)
|+++++
T Consensus 84 a~~~~~ 89 (91)
T 2dgw_A 84 EKSGPS 89 (91)
T ss_dssp ESSCCC
T ss_pred CCcCCC
Confidence 998864
No 92
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.85 E-value=1.2e-20 Score=148.91 Aligned_cols=85 Identities=28% Similarity=0.503 Sum_probs=81.1
Q ss_pred ccccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEeEEEee
Q 024012 183 IKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVDVA 262 (274)
Q Consensus 183 ~~~~~lfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~d~~~g~~rG~aFV~F~s~~~A~~Ai~~l~g~~l~G~~l~V~~a 262 (274)
.+.++|||+|||+.+|+++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|++||..|||..|.|++|+|+||
T Consensus 37 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 116 (156)
T 1h2v_Z 37 KKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDWD 116 (156)
T ss_dssp TTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCC
Q 024012 263 KTTPK 267 (274)
Q Consensus 263 ~~~~~ 267 (274)
++.+.
T Consensus 117 ~~~~~ 121 (156)
T 1h2v_Z 117 AGFKE 121 (156)
T ss_dssp SCCCT
T ss_pred CCCCC
Confidence 97653
No 93
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.85 E-value=1e-20 Score=138.46 Aligned_cols=91 Identities=34% Similarity=0.522 Sum_probs=81.5
Q ss_pred CCCCccccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEeE
Q 024012 179 SPTQIKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIV 258 (274)
Q Consensus 179 ~~~~~~~~~lfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~d~~~g~~rG~aFV~F~s~~~A~~Ai~~l~g~~l~G~~l~ 258 (274)
.....+.++|||+|||+++++++|+++|++|+ .+.++.++.++.++|||||+|.+.++|++|++.|||..|.|++|+
T Consensus 9 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~---~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 85 (102)
T 2fc8_A 9 NARSQPSKTLFVKGLSEDTTEETLKESFDGSV---RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVT 85 (102)
T ss_dssp SSSSCCCSSEEEECCCTTCCHHHHHHTSTTCS---EEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCCCCCEEEEeCCCCccCHHHHHHHhcCCe---EEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEE
Confidence 33445689999999999999999999999884 678888988999999999999999999999999999999999999
Q ss_pred EEeecCCCCCCCCC
Q 024012 259 VDVAKTTPKYSRGR 272 (274)
Q Consensus 259 V~~a~~~~~~~~~r 272 (274)
|+||+++....+++
T Consensus 86 V~~a~~~~~~~~~~ 99 (102)
T 2fc8_A 86 LDWAKPKGEGGSGP 99 (102)
T ss_dssp EEECCCCCSSSCSC
T ss_pred EEEecCCCCCCCCC
Confidence 99999987665544
No 94
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=1e-21 Score=146.88 Aligned_cols=85 Identities=25% Similarity=0.463 Sum_probs=80.4
Q ss_pred CCccccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEeEEE
Q 024012 181 TQIKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVD 260 (274)
Q Consensus 181 ~~~~~~~lfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~d~~~g~~rG~aFV~F~s~~~A~~Ai~~l~g~~l~G~~l~V~ 260 (274)
.....++|||+|||+++++++|+++|++||.|.+|.|+.|+.+|.++|||||+|.+.++|++|+ .|||..|+|+.|+|.
T Consensus 21 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~ 99 (114)
T 2cq4_A 21 EERDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQ 99 (114)
T ss_dssp THHHHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEE
T ss_pred ccCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEE
Confidence 3445789999999999999999999999999999999999989999999999999999999999 999999999999999
Q ss_pred eecCCC
Q 024012 261 VAKTTP 266 (274)
Q Consensus 261 ~a~~~~ 266 (274)
++++++
T Consensus 100 ~a~~~~ 105 (114)
T 2cq4_A 100 ASQAEK 105 (114)
T ss_dssp EHHHHH
T ss_pred ecCCCc
Confidence 998764
No 95
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.85 E-value=5.3e-21 Score=150.84 Aligned_cols=82 Identities=26% Similarity=0.470 Sum_probs=78.0
Q ss_pred cccEEEEcCCCCCCCHHHHHHHHhccC--CeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEeEEEe
Q 024012 184 KTKKLFVTGLSFYTSEKTLRAAFEGFG--ELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVDV 261 (274)
Q Consensus 184 ~~~~lfV~nLp~~~te~~L~~~F~~fG--~i~~v~i~~d~~~g~~rG~aFV~F~s~~~A~~Ai~~l~g~~l~G~~l~V~~ 261 (274)
..++|||+|||+++|+++|+++|++|| .|.+|+|++|+.+|+++|||||+|.+.++|++||..|||..|+|+.|+|.+
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~ 133 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRP 133 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEE
Confidence 468999999999999999999999999 999999999999999999999999999999999999999999999999999
Q ss_pred ecCC
Q 024012 262 AKTT 265 (274)
Q Consensus 262 a~~~ 265 (274)
|.++
T Consensus 134 a~~~ 137 (156)
T 3n9u_C 134 ATRQ 137 (156)
T ss_dssp CCHH
T ss_pred cCCC
Confidence 9764
No 96
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=4.1e-21 Score=140.51 Aligned_cols=79 Identities=20% Similarity=0.312 Sum_probs=72.9
Q ss_pred ccccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhC--CceeCCEEeEEE
Q 024012 183 IKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMN--GKIINGWMIVVD 260 (274)
Q Consensus 183 ~~~~~lfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~d~~~g~~rG~aFV~F~s~~~A~~Ai~~l~--g~~l~G~~l~V~ 260 (274)
.+.++|||+|||+++|+++|+++|++||.|.+|+|+++ ||||||+|.+.++|++|++.|+ +..+.|++|+|+
T Consensus 14 ~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~------kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~ 87 (105)
T 1sjq_A 14 VPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQ 87 (105)
T ss_dssp CCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCBC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEE
Confidence 45889999999999999999999999999999999865 7899999999999999999886 478999999999
Q ss_pred eecCCCC
Q 024012 261 VAKTTPK 267 (274)
Q Consensus 261 ~a~~~~~ 267 (274)
||++++.
T Consensus 88 ~A~~~~~ 94 (105)
T 1sjq_A 88 FSNHKEL 94 (105)
T ss_dssp CCSSSSC
T ss_pred EcCCCCC
Confidence 9998764
No 97
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=2.3e-21 Score=142.28 Aligned_cols=80 Identities=14% Similarity=0.281 Sum_probs=76.2
Q ss_pred ccccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEeEEEee
Q 024012 183 IKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVDVA 262 (274)
Q Consensus 183 ~~~~~lfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~d~~~g~~rG~aFV~F~s~~~A~~Ai~~l~g~~l~G~~l~V~~a 262 (274)
...++|||+|||+++|+++|+++|++||+|.+|.|++|+. |.++|||||+|.+.++|.+|+. ++|..++|+.|.|.++
T Consensus 9 ~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~-g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l~V~~~ 86 (103)
T 1s79_A 9 VKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLH-KAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDLLILFK 86 (103)
T ss_dssp SGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCT-TSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTCEEEEH
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCC-CCCccEEEEEECCHHHHHHHHH-cCCCEECCEEEEEEEc
Confidence 3478999999999999999999999999999999999986 9999999999999999999997 9999999999999998
Q ss_pred cC
Q 024012 263 KT 264 (274)
Q Consensus 263 ~~ 264 (274)
..
T Consensus 87 ~~ 88 (103)
T 1s79_A 87 DD 88 (103)
T ss_dssp HH
T ss_pred hH
Confidence 76
No 98
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.85 E-value=1.3e-21 Score=150.07 Aligned_cols=86 Identities=23% Similarity=0.392 Sum_probs=80.6
Q ss_pred CCccccEEEEcCCCCCCCHHHHHHHHhccCCeEE--EEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCc----eeCC
Q 024012 181 TQIKTKKLFVTGLSFYTSEKTLRAAFEGFGELVE--VKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGK----IING 254 (274)
Q Consensus 181 ~~~~~~~lfV~nLp~~~te~~L~~~F~~fG~i~~--v~i~~d~~~g~~rG~aFV~F~s~~~A~~Ai~~l~g~----~l~G 254 (274)
.....++|||+|||+++|+++|+++|++||.|.. |+|++|+.+|++||||||+|.+. +|.+|+..|||. .++|
T Consensus 19 ~~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~g 97 (131)
T 2m2b_A 19 SENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDG 97 (131)
T ss_dssp CSCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGG
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCC
Confidence 3456789999999999999999999999999977 99999999999999999999999 999999999999 9999
Q ss_pred EEeEEEeecCCCC
Q 024012 255 WMIVVDVAKTTPK 267 (274)
Q Consensus 255 ~~l~V~~a~~~~~ 267 (274)
++|+|++|++..+
T Consensus 98 r~l~V~~a~~~~~ 110 (131)
T 2m2b_A 98 KTINVEFAKGSKR 110 (131)
T ss_dssp CCCCCEECCCSCC
T ss_pred EEEEEEECCCCCC
Confidence 9999999998753
No 99
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.85 E-value=5e-21 Score=139.82 Aligned_cols=83 Identities=20% Similarity=0.232 Sum_probs=74.4
Q ss_pred ccccEEEEcCCCC-CCCHHHHHHHHhccCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCC--ceeCCEEeEE
Q 024012 183 IKTKKLFVTGLSF-YTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNG--KIINGWMIVV 259 (274)
Q Consensus 183 ~~~~~lfV~nLp~-~~te~~L~~~F~~fG~i~~v~i~~d~~~g~~rG~aFV~F~s~~~A~~Ai~~l~g--~~l~G~~l~V 259 (274)
.+.++|||+|||+ .+|+++|+++|++||.|.+|.|+++ +|||||+|.+.++|.+|++.||+ ..|.|++|+|
T Consensus 13 ~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V 86 (102)
T 1x4d_A 13 ETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNK------INEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRV 86 (102)
T ss_dssp CCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSS------SSCEEEEESSHHHHHHHHHHHHHSCCEETTEECEE
T ss_pred CCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHHcCCCceECCcEEEE
Confidence 3588999999999 9999999999999999999999865 57999999999999999999986 4599999999
Q ss_pred EeecCCCCCCCC
Q 024012 260 DVAKTTPKYSRG 271 (274)
Q Consensus 260 ~~a~~~~~~~~~ 271 (274)
.||+..++...+
T Consensus 87 ~~a~~~~~~~~~ 98 (102)
T 1x4d_A 87 HLSQKYKRIKSG 98 (102)
T ss_dssp EEECCCTTSSCC
T ss_pred EECCCCCCCCCC
Confidence 999987655444
No 100
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.84 E-value=3.1e-21 Score=139.35 Aligned_cols=82 Identities=15% Similarity=0.209 Sum_probs=76.7
Q ss_pred ccccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEeEEEee
Q 024012 183 IKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVDVA 262 (274)
Q Consensus 183 ~~~~~lfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~d~~~g~~rG~aFV~F~s~~~A~~Ai~~l~g~~l~G~~l~V~~a 262 (274)
...++|||+|||+++++++|+++|++||.|..+.++.++.+|.++|||||+|.+.++|++|++.|||..++|++|+|+++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~a 92 (95)
T 2ek1_A 13 PGPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSGP 92 (95)
T ss_dssp --CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEec
Confidence 34689999999999999999999999999999999999889999999999999999999999999999999999999998
Q ss_pred cC
Q 024012 263 KT 264 (274)
Q Consensus 263 ~~ 264 (274)
.+
T Consensus 93 ~s 94 (95)
T 2ek1_A 93 SS 94 (95)
T ss_dssp C-
T ss_pred cC
Confidence 64
No 101
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.84 E-value=5.8e-20 Score=139.34 Aligned_cols=87 Identities=24% Similarity=0.362 Sum_probs=81.7
Q ss_pred CCccccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEeEEE
Q 024012 181 TQIKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVD 260 (274)
Q Consensus 181 ~~~~~~~lfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~d~~~g~~rG~aFV~F~s~~~A~~Ai~~l~g~~l~G~~l~V~ 260 (274)
.....++|||+|||..+++++|+++|++||.|.+++|..++ +|.++|||||+|.+.++|.+|++.|||..++|++|+|+
T Consensus 31 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 109 (124)
T 2kt5_A 31 GVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQ 109 (124)
T ss_dssp CCSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCS-SSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECC-CCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEE
Confidence 34567899999999999999999999999999999999998 99999999999999999999999999999999999999
Q ss_pred eecCCCCC
Q 024012 261 VAKTTPKY 268 (274)
Q Consensus 261 ~a~~~~~~ 268 (274)
||.+....
T Consensus 110 ~a~~~~~~ 117 (124)
T 2kt5_A 110 LVASQIDL 117 (124)
T ss_dssp EECCTTCC
T ss_pred EeCCCCCC
Confidence 99987543
No 102
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=6.1e-21 Score=141.56 Aligned_cols=86 Identities=27% Similarity=0.568 Sum_probs=79.2
Q ss_pred CCCCccccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEeE
Q 024012 179 SPTQIKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIV 258 (274)
Q Consensus 179 ~~~~~~~~~lfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~d~~~g~~rG~aFV~F~s~~~A~~Ai~~l~g~~l~G~~l~ 258 (274)
.......++|||+|||.++++++|+++|++||.|.++++.+++ +.++|||||+|.+.++|++|++.|||..++|++|+
T Consensus 23 ~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~--~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~ 100 (109)
T 2err_A 23 TENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNE--RGSKGFGFVTFENSADADRAREKLHGTVVEGRKIE 100 (109)
T ss_dssp CSCTTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBT--TBCTTEEEEECCCSHHHHHHHHHHTTCEETTEECE
T ss_pred ccCCCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECC--CCCceEEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence 4445568999999999999999999999999999999999985 45899999999999999999999999999999999
Q ss_pred EEeecCCC
Q 024012 259 VDVAKTTP 266 (274)
Q Consensus 259 V~~a~~~~ 266 (274)
|++|+++.
T Consensus 101 V~~a~~~~ 108 (109)
T 2err_A 101 VNNATARV 108 (109)
T ss_dssp EEECCCSC
T ss_pred EEECCCCc
Confidence 99998763
No 103
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.84 E-value=1.3e-21 Score=142.99 Aligned_cols=86 Identities=21% Similarity=0.398 Sum_probs=76.8
Q ss_pred CCCccccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecC-CCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEeE
Q 024012 180 PTQIKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDK-ISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIV 258 (274)
Q Consensus 180 ~~~~~~~~lfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~d~-~~g~~rG~aFV~F~s~~~A~~Ai~~l~g~~l~G~~l~ 258 (274)
......++|||+|||+++++++|+++|++|| |.+++|++++ .+|+++|||||+|.+.++|.+|+ .|||..++|+.|+
T Consensus 14 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l~ 91 (100)
T 2j76_E 14 LPKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRIR 91 (100)
T ss_dssp ------CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCCC
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEEE
Confidence 3345589999999999999999999999999 9999999998 68999999999999999999999 9999999999999
Q ss_pred EEeecCCCC
Q 024012 259 VDVAKTTPK 267 (274)
Q Consensus 259 V~~a~~~~~ 267 (274)
|++|+++++
T Consensus 92 V~~a~~~~~ 100 (100)
T 2j76_E 92 VDVADQAQD 100 (100)
T ss_dssp CEECCCSCC
T ss_pred EEeccCCCC
Confidence 999988653
No 104
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.84 E-value=3.3e-20 Score=137.35 Aligned_cols=79 Identities=18% Similarity=0.292 Sum_probs=73.9
Q ss_pred CccccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCC-----EE
Q 024012 182 QIKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIING-----WM 256 (274)
Q Consensus 182 ~~~~~~lfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~d~~~g~~rG~aFV~F~s~~~A~~Ai~~l~g~~l~G-----~~ 256 (274)
....++|||+|||+++++++|+++|++||.|..+.|+.+ |||||+|.+.++|++||+.|||..|.| +.
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~ 84 (108)
T 1x4c_A 12 RRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAY 84 (108)
T ss_dssp CSCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT-------TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC-------CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceE
Confidence 345789999999999999999999999999999999876 799999999999999999999999999 99
Q ss_pred eEEEeecCCCC
Q 024012 257 IVVDVAKTTPK 267 (274)
Q Consensus 257 l~V~~a~~~~~ 267 (274)
|+|++|++++.
T Consensus 85 i~V~~a~~~~~ 95 (108)
T 1x4c_A 85 IRVKVDGPRSP 95 (108)
T ss_dssp EEEEESSCCSC
T ss_pred EEEEeCCCCCC
Confidence 99999998753
No 105
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.84 E-value=9.9e-21 Score=137.15 Aligned_cols=79 Identities=20% Similarity=0.237 Sum_probs=72.4
Q ss_pred CccccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCce--eCCEEeEE
Q 024012 182 QIKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKI--INGWMIVV 259 (274)
Q Consensus 182 ~~~~~~lfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~d~~~g~~rG~aFV~F~s~~~A~~Ai~~l~g~~--l~G~~l~V 259 (274)
..++++|||+|||+.+|+++|+++|++||.|.++++++ +||||||+|.+.++|.+|++.|+|.. +.|++|.|
T Consensus 18 ~~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~------~kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V 91 (100)
T 3r27_A 18 TPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMP------KKRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFV 91 (100)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEc------CCCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEE
Confidence 34688999999999999999999999999999999984 47899999999999999999999875 88999999
Q ss_pred EeecCCC
Q 024012 260 DVAKTTP 266 (274)
Q Consensus 260 ~~a~~~~ 266 (274)
+||+++.
T Consensus 92 ~~S~~k~ 98 (100)
T 3r27_A 92 NYSTSQK 98 (100)
T ss_dssp EECSCSC
T ss_pred Eeccccc
Confidence 9998764
No 106
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=3.3e-20 Score=135.45 Aligned_cols=81 Identities=20% Similarity=0.194 Sum_probs=73.4
Q ss_pred CccccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHh--CCceeCCEEeEE
Q 024012 182 QIKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEM--NGKIINGWMIVV 259 (274)
Q Consensus 182 ~~~~~~lfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~d~~~g~~rG~aFV~F~s~~~A~~Ai~~l--~g~~l~G~~l~V 259 (274)
..++++|||+|||+.+++++|+++|++||.|.++.++++ ||||||+|.+.++|.+|++.| ++..+.|++|+|
T Consensus 12 ~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V 85 (101)
T 2cq1_A 12 GAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG------KNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYI 85 (101)
T ss_dssp SSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCcEEEE
Confidence 345789999999999999999999999999999988864 789999999999999999977 578899999999
Q ss_pred EeecCCCCC
Q 024012 260 DVAKTTPKY 268 (274)
Q Consensus 260 ~~a~~~~~~ 268 (274)
.||+++...
T Consensus 86 ~~a~~~~~~ 94 (101)
T 2cq1_A 86 QYSNHKELK 94 (101)
T ss_dssp EECSCSSCC
T ss_pred EEcCcccCc
Confidence 999987643
No 107
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=1.2e-21 Score=138.61 Aligned_cols=81 Identities=23% Similarity=0.440 Sum_probs=77.0
Q ss_pred ccccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEeEEEee
Q 024012 183 IKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVDVA 262 (274)
Q Consensus 183 ~~~~~lfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~d~~~g~~rG~aFV~F~s~~~A~~Ai~~l~g~~l~G~~l~V~~a 262 (274)
.++++|||+|||+++++++|+++|++||.|.++.++.++.+|.++|||||+|.+.++|++|++.|||..+.|+.|+++++
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~~ 82 (85)
T 1x4e_A 3 SGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSGP 82 (85)
T ss_dssp CCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecCC
Confidence 34789999999999999999999999999999999999989999999999999999999999999999999999988876
Q ss_pred c
Q 024012 263 K 263 (274)
Q Consensus 263 ~ 263 (274)
+
T Consensus 83 ~ 83 (85)
T 1x4e_A 83 S 83 (85)
T ss_dssp C
T ss_pred C
Confidence 5
No 108
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.84 E-value=2.3e-21 Score=133.90 Aligned_cols=75 Identities=28% Similarity=0.542 Sum_probs=72.5
Q ss_pred EEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEeEEEee
Q 024012 187 KLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVDVA 262 (274)
Q Consensus 187 ~lfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~d~~~g~~rG~aFV~F~s~~~A~~Ai~~l~g~~l~G~~l~V~~a 262 (274)
+|||+|||+++++++|+++|++||.|.++.+++++.+|.++|||||+|.+.++|++|++ |||..++|++|+|.+|
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEEEEeC
Confidence 58999999999999999999999999999999999899999999999999999999996 9999999999999986
No 109
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=8.9e-21 Score=140.48 Aligned_cols=84 Identities=21% Similarity=0.360 Sum_probs=79.0
Q ss_pred cccEEEEcCCCCCCCHHHHHHHHhccCC-eEEEEEE-ecCCCCCcceEEEEEeCCHHHHHHHHHHhC--CceeCCEEeEE
Q 024012 184 KTKKLFVTGLSFYTSEKTLRAAFEGFGE-LVEVKII-MDKISKRSKGYAFIEYTTEEAASAALKEMN--GKIINGWMIVV 259 (274)
Q Consensus 184 ~~~~lfV~nLp~~~te~~L~~~F~~fG~-i~~v~i~-~d~~~g~~rG~aFV~F~s~~~A~~Ai~~l~--g~~l~G~~l~V 259 (274)
+.++|||+|||+++++++|+++|++||. |.++.++ .++.+|.++|||||+|.+.++|.+|++.|+ +..+.|++|+|
T Consensus 7 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l~V 86 (109)
T 2dis_A 7 GNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAV 86 (109)
T ss_dssp CSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCCEE
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeEEE
Confidence 4789999999999999999999999998 9999998 888889999999999999999999999996 59999999999
Q ss_pred EeecCCCC
Q 024012 260 DVAKTTPK 267 (274)
Q Consensus 260 ~~a~~~~~ 267 (274)
+||++++.
T Consensus 87 ~~a~~~~~ 94 (109)
T 2dis_A 87 DWAEPEID 94 (109)
T ss_dssp EESCSSCS
T ss_pred EEcCCCCC
Confidence 99998754
No 110
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.84 E-value=2.6e-20 Score=144.04 Aligned_cols=84 Identities=32% Similarity=0.564 Sum_probs=78.5
Q ss_pred CCCCccccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEeE
Q 024012 179 SPTQIKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIV 258 (274)
Q Consensus 179 ~~~~~~~~~lfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~d~~~g~~rG~aFV~F~s~~~A~~Ai~~l~g~~l~G~~l~ 258 (274)
.....+.++|||+|||+.+++++|+++|++||.|.++++++++.+|.++|||||+|.+.++|++|++.|||..++|++|+
T Consensus 57 ~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 136 (140)
T 2ku7_A 57 GGSATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIR 136 (140)
T ss_dssp CSSCSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEE
T ss_pred CCCCCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence 33445689999999999999999999999999999999999988999999999999999999999999999999999999
Q ss_pred EEee
Q 024012 259 VDVA 262 (274)
Q Consensus 259 V~~a 262 (274)
|+||
T Consensus 137 v~~A 140 (140)
T 2ku7_A 137 VNLA 140 (140)
T ss_dssp EEC-
T ss_pred EEeC
Confidence 9986
No 111
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=1.2e-20 Score=138.28 Aligned_cols=87 Identities=20% Similarity=0.274 Sum_probs=78.8
Q ss_pred CccccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEeEEEe
Q 024012 182 QIKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVDV 261 (274)
Q Consensus 182 ~~~~~~lfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~d~~~g~~rG~aFV~F~s~~~A~~Ai~~l~g~~l~G~~l~V~~ 261 (274)
....++|||+|||+++|+++|+++|++||. ++|+|++|+ +|+++|||||+|.+.++|++|| .+|+..|+||.|+|.+
T Consensus 12 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~-~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~ 88 (102)
T 1wez_A 12 STTGHCVHMRGLPYRATENDIYNFFSPLNP-MRVHIEIGP-DGRVTGEADVEFATHEDAVAAM-AKDKANMQHRYVELFL 88 (102)
T ss_dssp CSSSCEEEEESCCTTCCHHHHHHSSCSCCC-SEEEEEESS-SSCEEEEEEEECSSSHHHHHHH-TTSSCCSSSSCCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCc-eEEEEEECC-CCCEeeEEEEEECCHHHHHHHH-HhCCCeECCcEEEEEE
Confidence 345789999999999999999999999995 499999998 9999999999999999999999 6899999999999999
Q ss_pred ecCCCCCCCC
Q 024012 262 AKTTPKYSRG 271 (274)
Q Consensus 262 a~~~~~~~~~ 271 (274)
+.+......+
T Consensus 89 ~~~~~~~~~~ 98 (102)
T 1wez_A 89 NSTAGTSGSG 98 (102)
T ss_dssp ECCCCCCCCC
T ss_pred CCCCCCCCCC
Confidence 9987654443
No 112
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.83 E-value=1.2e-20 Score=139.05 Aligned_cols=84 Identities=20% Similarity=0.307 Sum_probs=77.2
Q ss_pred ccccEEEEcCCCCCC------CHHHHHHHHhccCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCE-
Q 024012 183 IKTKKLFVTGLSFYT------SEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGW- 255 (274)
Q Consensus 183 ~~~~~lfV~nLp~~~------te~~L~~~F~~fG~i~~v~i~~d~~~g~~rG~aFV~F~s~~~A~~Ai~~l~g~~l~G~- 255 (274)
...++|||+|||+.+ ++++|+++|++||.|.++.|++ .+|.++|||||+|.+.++|.+|+..|||..++|+
T Consensus 13 ~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~~--~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~~ 90 (105)
T 2nlw_A 13 GIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPE--EDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQH 90 (105)
T ss_dssp SCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECCC--BTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTTC
T ss_pred CCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEeeC--CCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCCc
Confidence 347899999999999 7899999999999999999883 5899999999999999999999999999999998
Q ss_pred EeEEEeecCCCCC
Q 024012 256 MIVVDVAKTTPKY 268 (274)
Q Consensus 256 ~l~V~~a~~~~~~ 268 (274)
+|+|.+|....+.
T Consensus 91 ~l~V~~a~~~~k~ 103 (105)
T 2nlw_A 91 TFRVNLFTDFDKY 103 (105)
T ss_dssp EEEEECSCCCCCC
T ss_pred eEEEEEcchHhhh
Confidence 9999999876553
No 113
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.83 E-value=1.8e-20 Score=131.31 Aligned_cols=74 Identities=24% Similarity=0.318 Sum_probs=70.1
Q ss_pred cccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEeEEEeec
Q 024012 184 KTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVDVAK 263 (274)
Q Consensus 184 ~~~~lfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~d~~~g~~rG~aFV~F~s~~~A~~Ai~~l~g~~l~G~~l~V~~a~ 263 (274)
.+..|||+||++.+||++|+++|.+||+|.++++.. +||||||+|.+.++|.+|++.|||..+.|++|+|++|.
T Consensus 6 ~~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~------~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A~ 79 (89)
T 2wbr_A 6 GSSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL------NQGIALCKYTTREEANKAQMALNNCVLANTTIFAESPS 79 (89)
T ss_dssp CCCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECCC
T ss_pred ccceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC------CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEECC
Confidence 367899999999999999999999999999999874 68999999999999999999999999999999999994
No 114
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.83 E-value=3.1e-20 Score=132.79 Aligned_cols=82 Identities=30% Similarity=0.509 Sum_probs=75.9
Q ss_pred ccccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEeEEEee
Q 024012 183 IKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVDVA 262 (274)
Q Consensus 183 ~~~~~lfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~d~~~g~~rG~aFV~F~s~~~A~~Ai~~l~g~~l~G~~l~V~~a 262 (274)
.+.++|||+|||+++++++|+++|++||.|.++.+. +|||||+|.+.++|++|++.|||..+.|++|+|+|+
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 77 (90)
T 2dnq_A 6 SGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII--------KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEAS 77 (90)
T ss_dssp SCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE--------TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEECS
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEEC
Confidence 458899999999999999999999999999999987 579999999999999999999999999999999999
Q ss_pred cCCCCCCCCC
Q 024012 263 KTTPKYSRGR 272 (274)
Q Consensus 263 ~~~~~~~~~r 272 (274)
+++++...++
T Consensus 78 ~~~~~~~~~~ 87 (90)
T 2dnq_A 78 KNKSKASSGP 87 (90)
T ss_dssp SCCCCCCSSC
T ss_pred CCCCCCCCCC
Confidence 9987665543
No 115
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.83 E-value=1.2e-20 Score=140.14 Aligned_cols=82 Identities=20% Similarity=0.204 Sum_probs=72.5
Q ss_pred ccccEEEEcCCCCCCCHHHHHHHHhccC-CeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEeEEEe
Q 024012 183 IKTKKLFVTGLSFYTSEKTLRAAFEGFG-ELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVDV 261 (274)
Q Consensus 183 ~~~~~lfV~nLp~~~te~~L~~~F~~fG-~i~~v~i~~d~~~g~~rG~aFV~F~s~~~A~~Ai~~l~g~~l~G~~l~V~~ 261 (274)
....+|||+|||+++++++|+++|++|| .|..+.|.. +.++|||||+|.+.++|++|++.|||..++|+.|+|++
T Consensus 26 ~~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~----~~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~ 101 (111)
T 2jvr_A 26 AKRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNT----RDFDGTGALEFPSEEILVEALERLNNIEFRGSVITVER 101 (111)
T ss_dssp CCCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSS----CSSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEc----CCCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 3478999999999999999999999999 899998863 35799999999999999999999999999999999999
Q ss_pred ecCCCCC
Q 024012 262 AKTTPKY 268 (274)
Q Consensus 262 a~~~~~~ 268 (274)
++..+..
T Consensus 102 a~~~p~~ 108 (111)
T 2jvr_A 102 DDNPPPI 108 (111)
T ss_dssp SCC----
T ss_pred CCCCCCC
Confidence 9876543
No 116
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=2.8e-20 Score=136.78 Aligned_cols=84 Identities=23% Similarity=0.326 Sum_probs=77.7
Q ss_pred CccccEEEEcCCCCCCCHHHHHHHHhccCCeEE-EEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEeEEE
Q 024012 182 QIKTKKLFVTGLSFYTSEKTLRAAFEGFGELVE-VKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVD 260 (274)
Q Consensus 182 ~~~~~~lfV~nLp~~~te~~L~~~F~~fG~i~~-v~i~~d~~~g~~rG~aFV~F~s~~~A~~Ai~~l~g~~l~G~~l~V~ 260 (274)
.....+|||+|||+.+|+++|+++|++||.|.+ +.|+.+ .+|+++|||||+|.+.++|++||.. +|..++|+.|+|.
T Consensus 12 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~-~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr~i~v~ 89 (104)
T 1wg5_A 12 TANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVD-FQGRSTGEAFVQFASQEIAEKALKK-HKERIGHRYIEIF 89 (104)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBC-SSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSSCCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEEC-CCCCcceEEEEEECCHHHHHHHHHh-CcchhCCcEEEEE
Confidence 345789999999999999999999999999997 889888 5999999999999999999999977 9999999999999
Q ss_pred eecCCCC
Q 024012 261 VAKTTPK 267 (274)
Q Consensus 261 ~a~~~~~ 267 (274)
++.++.-
T Consensus 90 ~~~~~~~ 96 (104)
T 1wg5_A 90 KSSRAEV 96 (104)
T ss_dssp EECTTTS
T ss_pred ECCHHHH
Confidence 9987653
No 117
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.83 E-value=1.5e-21 Score=139.68 Aligned_cols=82 Identities=26% Similarity=0.524 Sum_probs=74.4
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEeEEEeecCC
Q 024012 186 KKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVDVAKTT 265 (274)
Q Consensus 186 ~~lfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~d~~~g~~rG~aFV~F~s~~~A~~Ai~~l~g~~l~G~~l~V~~a~~~ 265 (274)
++|||+|||.++++++|+++|++||.|.++.+.+++.+|.++|||||+|.+.+ |.+|+..|||..++|++|+|++|.+.
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~ 80 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPK 80 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC---
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 57999999999999999999999999999999999989999999999999999 99999999999999999999999987
Q ss_pred CCC
Q 024012 266 PKY 268 (274)
Q Consensus 266 ~~~ 268 (274)
...
T Consensus 81 ~~~ 83 (90)
T 2ki2_A 81 KSL 83 (90)
T ss_dssp ---
T ss_pred CCC
Confidence 643
No 118
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=4.2e-20 Score=137.97 Aligned_cols=83 Identities=22% Similarity=0.439 Sum_probs=78.2
Q ss_pred CccccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcee--------C
Q 024012 182 QIKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKII--------N 253 (274)
Q Consensus 182 ~~~~~~lfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~d~~~g~~rG~aFV~F~s~~~A~~Ai~~l~g~~l--------~ 253 (274)
....++|||+|||+++++++|+++|++||.|.+++|++++ +|.++|||||+|.+.++|++|++.|||..+ .
T Consensus 22 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~ 100 (114)
T 1x5o_A 22 EQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDS-SGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAP 100 (114)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECS-SSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCC
Confidence 3457899999999999999999999999999999999998 999999999999999999999999999999 5
Q ss_pred CEEeEEEeecCC
Q 024012 254 GWMIVVDVAKTT 265 (274)
Q Consensus 254 G~~l~V~~a~~~ 265 (274)
|++|.|.||+++
T Consensus 101 ~~~l~v~~a~p~ 112 (114)
T 1x5o_A 101 TEPLLCKFSGPS 112 (114)
T ss_dssp SSCBEEEECCCS
T ss_pred CCceeEEccCCC
Confidence 788999999965
No 119
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.83 E-value=2.3e-20 Score=137.11 Aligned_cols=82 Identities=20% Similarity=0.204 Sum_probs=73.2
Q ss_pred CCccccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCc--eeCCEEeE
Q 024012 181 TQIKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGK--IINGWMIV 258 (274)
Q Consensus 181 ~~~~~~~lfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~d~~~g~~rG~aFV~F~s~~~A~~Ai~~l~g~--~l~G~~l~ 258 (274)
...+.++|||+|||+.+++++|+++|++||.|.+|.++++ ||||||+|.+.++|.+|++.|++. .+.|++|+
T Consensus 11 ~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~ 84 (104)
T 1wex_A 11 KVSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF------KRQALVEFENIDSAKECVTFAADVPVYIAGQQAF 84 (104)
T ss_dssp CCCCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEE
Confidence 3455889999999999999999999999999999998753 789999999999999999988764 59999999
Q ss_pred EEeecCCCCC
Q 024012 259 VDVAKTTPKY 268 (274)
Q Consensus 259 V~~a~~~~~~ 268 (274)
|+||+++...
T Consensus 85 V~~a~~~~~~ 94 (104)
T 1wex_A 85 FNYSTSKRIT 94 (104)
T ss_dssp EEECSSSSCC
T ss_pred EEEccCcccc
Confidence 9999987643
No 120
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=8.8e-21 Score=141.87 Aligned_cols=89 Identities=29% Similarity=0.412 Sum_probs=77.0
Q ss_pred ccccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEeEEEee
Q 024012 183 IKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVDVA 262 (274)
Q Consensus 183 ~~~~~lfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~d~~~g~~rG~aFV~F~s~~~A~~Ai~~l~g~~l~G~~l~V~~a 262 (274)
.+.++|||+|||+++|+++|+++|++||.|..+.+..+..+|.++|||||+|.+.++|++|+..|||..+.|++|+|.||
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a 102 (115)
T 2cpx_A 23 EPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIEFG 102 (115)
T ss_dssp SCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEc
Confidence 45789999999999999999999999999954333333237899999999999999999999999999999999999999
Q ss_pred cCCCCCCCC
Q 024012 263 KTTPKYSRG 271 (274)
Q Consensus 263 ~~~~~~~~~ 271 (274)
+++......
T Consensus 103 ~~~~~~~~~ 111 (115)
T 2cpx_A 103 KNKKQRSSG 111 (115)
T ss_dssp CCCSCCCCC
T ss_pred cCCCCCCCC
Confidence 988755443
No 121
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=1.3e-19 Score=131.91 Aligned_cols=85 Identities=36% Similarity=0.557 Sum_probs=76.1
Q ss_pred CCCccccEEEEcCCCCCCCHHHHHHHHhcc--CCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEe
Q 024012 180 PTQIKTKKLFVTGLSFYTSEKTLRAAFEGF--GELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMI 257 (274)
Q Consensus 180 ~~~~~~~~lfV~nLp~~~te~~L~~~F~~f--G~i~~v~i~~d~~~g~~rG~aFV~F~s~~~A~~Ai~~l~g~~l~G~~l 257 (274)
....+.++|||+|||+.+++++|+++|++| |.|.++++. +|||||+|.+.++|++|+..|||..+.|++|
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 81 (99)
T 2cpd_A 10 DTMSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI--------RDYAFVHFSNREDAVEAMKALNGKVLDGSPI 81 (99)
T ss_dssp SCSSCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHSSEEETTEEE
T ss_pred cccCCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe--------CCeEEEEeCCHHHHHHHHHHhCCCEeCCcEE
Confidence 334457899999999999999999999999 999999875 6799999999999999999999999999999
Q ss_pred EEEeecCCCCCCCCC
Q 024012 258 VVDVAKTTPKYSRGR 272 (274)
Q Consensus 258 ~V~~a~~~~~~~~~r 272 (274)
+|+||+++++..+++
T Consensus 82 ~v~~a~~~~~~~~~~ 96 (99)
T 2cpd_A 82 EVTLAKPVDKDSSGP 96 (99)
T ss_dssp EEECCCCCCCCCCCC
T ss_pred EEEECCCCCCCCCCC
Confidence 999999987655443
No 122
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=4.6e-20 Score=136.72 Aligned_cols=85 Identities=26% Similarity=0.580 Sum_probs=77.9
Q ss_pred CccccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEeEEEe
Q 024012 182 QIKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVDV 261 (274)
Q Consensus 182 ~~~~~~lfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~d~~~g~~rG~aFV~F~s~~~A~~Ai~~l~g~~l~G~~l~V~~ 261 (274)
....++|||+|||..+++++|+++|++||.|.+|++.++ +|||||+|.+.++|.+|+..|||..+.|++|+|.|
T Consensus 22 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~------~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 95 (109)
T 1x4g_A 22 SPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE------KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYW 95 (109)
T ss_dssp CSSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEe
Confidence 345789999999999999999999999999999999876 78999999999999999999999999999999999
Q ss_pred ecCCCCCCCCC
Q 024012 262 AKTTPKYSRGR 272 (274)
Q Consensus 262 a~~~~~~~~~r 272 (274)
|++++...+.+
T Consensus 96 a~~~~~~~~~~ 106 (109)
T 1x4g_A 96 GKESPDMTSGP 106 (109)
T ss_dssp CCCCCSSCCCC
T ss_pred cCCCCCCCCCC
Confidence 99987655543
No 123
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.83 E-value=2e-20 Score=142.26 Aligned_cols=82 Identities=20% Similarity=0.362 Sum_probs=74.8
Q ss_pred CccccEEEEcCCCCCCCHHHHH----HHHhccCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEe
Q 024012 182 QIKTKKLFVTGLSFYTSEKTLR----AAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMI 257 (274)
Q Consensus 182 ~~~~~~lfV~nLp~~~te~~L~----~~F~~fG~i~~v~i~~d~~~g~~rG~aFV~F~s~~~A~~Ai~~l~g~~l~G~~l 257 (274)
..+.++|||+|||+.+++++|+ ++|++||.|.+|.+.. ++++||||||+|.+.++|.+|+..|||..+.|++|
T Consensus 26 ~~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~---~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l 102 (127)
T 2a3j_A 26 TEPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDL---SDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPL 102 (127)
T ss_dssp CSCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECC---CCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEecc---CCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEE
Confidence 3457899999999999999876 6999999999987753 67899999999999999999999999999999999
Q ss_pred EEEeecCCC
Q 024012 258 VVDVAKTTP 266 (274)
Q Consensus 258 ~V~~a~~~~ 266 (274)
+|+||+++.
T Consensus 103 ~V~~a~~~~ 111 (127)
T 2a3j_A 103 VITFSETPQ 111 (127)
T ss_dssp EEEECCCCC
T ss_pred EEEEccCcc
Confidence 999999875
No 124
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=3.1e-20 Score=139.12 Aligned_cols=81 Identities=20% Similarity=0.298 Sum_probs=73.8
Q ss_pred CccccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCC--ceeCCEEeEE
Q 024012 182 QIKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNG--KIINGWMIVV 259 (274)
Q Consensus 182 ~~~~~~lfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~d~~~g~~rG~aFV~F~s~~~A~~Ai~~l~g--~~l~G~~l~V 259 (274)
..++++|||+|||+++|+++|+++|++||.|++|+|+++ ||||||+|.+.++|.+|++.|++ ..+.|++|+|
T Consensus 28 ~~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~------kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V 101 (119)
T 2ad9_A 28 GVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYI 101 (119)
T ss_dssp SSCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG------GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CCEEEEEECCHHHHHHHHHHhccCCceECCeEEEE
Confidence 345789999999999999999999999999999999875 78999999999999999999874 6899999999
Q ss_pred EeecCCCCC
Q 024012 260 DVAKTTPKY 268 (274)
Q Consensus 260 ~~a~~~~~~ 268 (274)
+||++++..
T Consensus 102 ~~a~~k~~~ 110 (119)
T 2ad9_A 102 QFSNHKELK 110 (119)
T ss_dssp EECSSSSCC
T ss_pred EEccCCCCC
Confidence 999987643
No 125
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.83 E-value=1e-19 Score=130.63 Aligned_cols=84 Identities=25% Similarity=0.440 Sum_probs=76.1
Q ss_pred CCccccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEeEEE
Q 024012 181 TQIKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVD 260 (274)
Q Consensus 181 ~~~~~~~lfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~d~~~g~~rG~aFV~F~s~~~A~~Ai~~l~g~~l~G~~l~V~ 260 (274)
.....++|||+|||+.+++++|+++|++||.|.++.+.+ +||||+|.+.++|.+|++.|||..+.|++|+|+
T Consensus 6 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~~--------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 77 (92)
T 2dgt_A 6 SGKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVK--------DYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQ 77 (92)
T ss_dssp CCCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEECS--------SEEEEEESCHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEC--------CEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEE
Confidence 344588999999999999999999999999999999973 399999999999999999999999999999999
Q ss_pred eecCCCCCCCCC
Q 024012 261 VAKTTPKYSRGR 272 (274)
Q Consensus 261 ~a~~~~~~~~~r 272 (274)
+|+++++...+.
T Consensus 78 ~a~~~~~~~~~~ 89 (92)
T 2dgt_A 78 LSTSRLRTASGP 89 (92)
T ss_dssp ESSCCCSCCCCC
T ss_pred EccCCCCCCCCC
Confidence 999887655543
No 126
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=1.6e-20 Score=140.39 Aligned_cols=84 Identities=18% Similarity=0.265 Sum_probs=78.1
Q ss_pred CCccccEEEEcCCCCCCCHHHHHHHHhccCCe-EEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEeEE
Q 024012 181 TQIKTKKLFVTGLSFYTSEKTLRAAFEGFGEL-VEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVV 259 (274)
Q Consensus 181 ~~~~~~~lfV~nLp~~~te~~L~~~F~~fG~i-~~v~i~~d~~~g~~rG~aFV~F~s~~~A~~Ai~~l~g~~l~G~~l~V 259 (274)
.....++|||+|||+++|+++|+++|++||.| ..|+|++|+ +|+++|||||+|.+.++|++||+. ||..|+|+.|.|
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i~v 88 (114)
T 2cpy_A 11 VNSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDN-NGQGLGQALVQFKNEDDARKSERL-HRKKLNGREAFV 88 (114)
T ss_dssp CCSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCT-TSSCSSCEEEECSSHHHHHHHGGG-CSEEETTEEEEE
T ss_pred CCCCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECC-CCCcceEEEEEECCHHHHHHHHHh-CCCccCCeEEEE
Confidence 34457899999999999999999999999999 899999999 999999999999999999999976 999999999999
Q ss_pred EeecCCC
Q 024012 260 DVAKTTP 266 (274)
Q Consensus 260 ~~a~~~~ 266 (274)
.+|.++.
T Consensus 89 ~~a~~~~ 95 (114)
T 2cpy_A 89 HVVTLED 95 (114)
T ss_dssp EEECHHH
T ss_pred EECCHHH
Confidence 9998753
No 127
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.82 E-value=5.5e-21 Score=132.52 Aligned_cols=76 Identities=30% Similarity=0.555 Sum_probs=73.5
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEeEEEee
Q 024012 186 KKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVDVA 262 (274)
Q Consensus 186 ~~lfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~d~~~g~~rG~aFV~F~s~~~A~~Ai~~l~g~~l~G~~l~V~~a 262 (274)
++|||+|||+++++++|+++|++||.|.++.+++++.+|.++|||||+|.+.++|++|++.++ ..++|++|+|++|
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence 479999999999999999999999999999999999899999999999999999999999999 9999999999987
No 128
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.82 E-value=1.1e-19 Score=134.95 Aligned_cols=83 Identities=23% Similarity=0.472 Sum_probs=74.6
Q ss_pred ccccEEEEcCCCCC-CCHHHHHHHHhccCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEeEEEe
Q 024012 183 IKTKKLFVTGLSFY-TSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVDV 261 (274)
Q Consensus 183 ~~~~~lfV~nLp~~-~te~~L~~~F~~fG~i~~v~i~~d~~~g~~rG~aFV~F~s~~~A~~Ai~~l~g~~l~G~~l~V~~ 261 (274)
...++|||+|||+. +++++|+++|++||.|.++.+ ++|||||+|.+.++|++|++.|||..++|++|+|+|
T Consensus 25 ~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i--------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 96 (110)
T 1wf1_A 25 SINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV--------HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDINM 96 (110)
T ss_dssp TCSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE--------ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCEEE
T ss_pred CCCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE--------eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 34689999999999 999999999999999999988 478999999999999999999999999999999999
Q ss_pred ecCCCCCCCCCC
Q 024012 262 AKTTPKYSRGRP 273 (274)
Q Consensus 262 a~~~~~~~~~r~ 273 (274)
|++++..+.++.
T Consensus 97 a~~~~~~~~~~~ 108 (110)
T 1wf1_A 97 AGEPKPDRSGPS 108 (110)
T ss_dssp SCCCCSCCCCCC
T ss_pred CCCCCCCCCCCC
Confidence 997655444443
No 129
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.82 E-value=8.4e-20 Score=128.99 Aligned_cols=79 Identities=30% Similarity=0.461 Sum_probs=72.6
Q ss_pred CCCCccccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHh-CCceeCCEEe
Q 024012 179 SPTQIKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEM-NGKIINGWMI 257 (274)
Q Consensus 179 ~~~~~~~~~lfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~d~~~g~~rG~aFV~F~s~~~A~~Ai~~l-~g~~l~G~~l 257 (274)
++.....++|||+|||..+++++|+++|++||.|.++++.++ +|||||+|.+.++|.+|++.| +|..++|++|
T Consensus 6 ~~~~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~------kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l 79 (85)
T 2ytc_A 6 SGEDKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQR------QQCAFIQFATRQAAEVAAEKSFNKLIVNGRRL 79 (85)
T ss_dssp CCSCSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGG------GTEEEEEESSHHHHHHHHHTTTTTCEETTEEC
T ss_pred CCCCCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECC------CCEEEEEECCHHHHHHHHHHhcCCeeECCCEE
Confidence 334456889999999999999999999999999999999864 789999999999999999999 9999999999
Q ss_pred EEEeec
Q 024012 258 VVDVAK 263 (274)
Q Consensus 258 ~V~~a~ 263 (274)
+|+||+
T Consensus 80 ~v~~ak 85 (85)
T 2ytc_A 80 NVKWGR 85 (85)
T ss_dssp CEEECC
T ss_pred EEEecC
Confidence 999985
No 130
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.82 E-value=5.3e-20 Score=136.25 Aligned_cols=81 Identities=31% Similarity=0.523 Sum_probs=73.3
Q ss_pred CCCccccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEeEE
Q 024012 180 PTQIKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVV 259 (274)
Q Consensus 180 ~~~~~~~~lfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~d~~~g~~rG~aFV~F~s~~~A~~Ai~~l~g~~l~G~~l~V 259 (274)
......++|||+|||+++++++|+++|++||.|.++.+. +|||||+|.+.++|++|+..|||..++|++|+|
T Consensus 26 ~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~--------kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 97 (108)
T 2jvo_A 26 EGELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL--------NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEV 97 (108)
T ss_dssp --CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE--------TTEEEEECSSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEE
Confidence 334568899999999999999999999999999999987 689999999999999999999999999999999
Q ss_pred EeecCCCCC
Q 024012 260 DVAKTTPKY 268 (274)
Q Consensus 260 ~~a~~~~~~ 268 (274)
.||++++++
T Consensus 98 ~~a~~~~~r 106 (108)
T 2jvo_A 98 VYSKLPAKR 106 (108)
T ss_dssp ESCSCCC--
T ss_pred EEecCCCCC
Confidence 999987754
No 131
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.82 E-value=1.2e-19 Score=131.71 Aligned_cols=79 Identities=16% Similarity=0.415 Sum_probs=72.2
Q ss_pred CCCccccEEEEcCCCC-CCCHHHHHHHHhccCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEeE
Q 024012 180 PTQIKTKKLFVTGLSF-YTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIV 258 (274)
Q Consensus 180 ~~~~~~~~lfV~nLp~-~~te~~L~~~F~~fG~i~~v~i~~d~~~g~~rG~aFV~F~s~~~A~~Ai~~l~g~~l~G~~l~ 258 (274)
....+.++|||+|||+ ++++++|+++|++||.|.++++. +|||||+|.+.++|.+|++.|||..++|++|+
T Consensus 17 ~~~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~ 88 (97)
T 2xnq_A 17 RGSHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIEXESQEMNFGKKLI 88 (97)
T ss_dssp --CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHTTSEETTEECE
T ss_pred CCCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence 3445689999999998 99999999999999999999883 78999999999999999999999999999999
Q ss_pred EEeecCCC
Q 024012 259 VDVAKTTP 266 (274)
Q Consensus 259 V~~a~~~~ 266 (274)
|++|+++.
T Consensus 89 V~~a~~~~ 96 (97)
T 2xnq_A 89 LEVSSSNA 96 (97)
T ss_dssp EEECCCCC
T ss_pred EEecCCCC
Confidence 99998765
No 132
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.82 E-value=2.6e-20 Score=134.98 Aligned_cols=83 Identities=22% Similarity=0.386 Sum_probs=76.5
Q ss_pred CccccEEEEcCCCCCCCHHHHH----HHHhccCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEe
Q 024012 182 QIKTKKLFVTGLSFYTSEKTLR----AAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMI 257 (274)
Q Consensus 182 ~~~~~~lfV~nLp~~~te~~L~----~~F~~fG~i~~v~i~~d~~~g~~rG~aFV~F~s~~~A~~Ai~~l~g~~l~G~~l 257 (274)
..++++|||+|||.++++++|+ ++|++||.|.++.+.. +|.++|||||+|.+.++|.+|+..|||..++|++|
T Consensus 5 ~~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 81 (97)
T 1nu4_A 5 TRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPM 81 (97)
T ss_dssp -CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCH---HHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEc---CCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEE
Confidence 3458899999999999999999 9999999999998873 57889999999999999999999999999999999
Q ss_pred EEEeecCCCC
Q 024012 258 VVDVAKTTPK 267 (274)
Q Consensus 258 ~V~~a~~~~~ 267 (274)
+|+||++++.
T Consensus 82 ~v~~a~~~~~ 91 (97)
T 1nu4_A 82 RIQYAKTDSD 91 (97)
T ss_dssp EEEECSSCCT
T ss_pred EEEEccCCCc
Confidence 9999998764
No 133
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.82 E-value=4e-21 Score=140.44 Aligned_cols=84 Identities=17% Similarity=0.251 Sum_probs=77.4
Q ss_pred ccccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEeEEEee
Q 024012 183 IKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVDVA 262 (274)
Q Consensus 183 ~~~~~lfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~d~~~g~~rG~aFV~F~s~~~A~~Ai~~l~g~~l~G~~l~V~~a 262 (274)
...++|||+|||+++|+++|+++|++||.|.. .++.+..+|.++|||||+|.+.++|++|++ |||..+.|+.|+|.+|
T Consensus 15 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~~a 92 (101)
T 1fj7_A 15 TTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEKP 92 (101)
T ss_dssp SCSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEEEc
Confidence 34789999999999999999999999999988 677777789999999999999999999998 9999999999999999
Q ss_pred cCCCCC
Q 024012 263 KTTPKY 268 (274)
Q Consensus 263 ~~~~~~ 268 (274)
++++..
T Consensus 93 ~~~~~~ 98 (101)
T 1fj7_A 93 KGRDGT 98 (101)
T ss_dssp SCCCCS
T ss_pred CCCCCC
Confidence 986643
No 134
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.82 E-value=8.5e-20 Score=132.36 Aligned_cols=80 Identities=31% Similarity=0.476 Sum_probs=74.1
Q ss_pred CccccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeC--CEEeEE
Q 024012 182 QIKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIIN--GWMIVV 259 (274)
Q Consensus 182 ~~~~~~lfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~d~~~g~~rG~aFV~F~s~~~A~~Ai~~l~g~~l~--G~~l~V 259 (274)
..+.++|||+|||+++++++|+++|++||.|.++.+..+ +|||||+|.+.++|++|++.|||..+. |++|+|
T Consensus 14 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V 87 (97)
T 1why_A 14 ANPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG------DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRV 87 (97)
T ss_dssp CCCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS------SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC------CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEE
Confidence 345789999999999999999999999999999998753 789999999999999999999999999 999999
Q ss_pred EeecCCCC
Q 024012 260 DVAKTTPK 267 (274)
Q Consensus 260 ~~a~~~~~ 267 (274)
+||++++.
T Consensus 88 ~~a~~~~~ 95 (97)
T 1why_A 88 DFAKSGPS 95 (97)
T ss_dssp EECCCCCC
T ss_pred EECCCCCC
Confidence 99998764
No 135
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.71 E-value=7.9e-22 Score=147.96 Aligned_cols=89 Identities=24% Similarity=0.396 Sum_probs=82.9
Q ss_pred ccccEEEEcCCCCCCCHHHHHHHHhccCCeEE--------EEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCC
Q 024012 183 IKTKKLFVTGLSFYTSEKTLRAAFEGFGELVE--------VKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIING 254 (274)
Q Consensus 183 ~~~~~lfV~nLp~~~te~~L~~~F~~fG~i~~--------v~i~~d~~~g~~rG~aFV~F~s~~~A~~Ai~~l~g~~l~G 254 (274)
.+.++|||+|||..+++++|+++|++||.|.. ++|+.|+.+|.++|||||+|.+.++|++|+..|||..+.|
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g 84 (116)
T 2lcw_A 5 SDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSG 84 (116)
Confidence 45789999999999999999999999999999 9999998899999999999999999999999999999999
Q ss_pred EEeEEEeecCCCCCCCC
Q 024012 255 WMIVVDVAKTTPKYSRG 271 (274)
Q Consensus 255 ~~l~V~~a~~~~~~~~~ 271 (274)
++|+|++|++++...++
T Consensus 85 ~~l~V~~a~~~~~~~~g 101 (116)
T 2lcw_A 85 NPIKVSFATRRADFNRG 101 (116)
Confidence 99999999998755443
No 136
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.82 E-value=1.5e-19 Score=129.26 Aligned_cols=81 Identities=32% Similarity=0.476 Sum_probs=74.2
Q ss_pred CccccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEeEEEe
Q 024012 182 QIKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVDV 261 (274)
Q Consensus 182 ~~~~~~lfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~d~~~g~~rG~aFV~F~s~~~A~~Ai~~l~g~~l~G~~l~V~~ 261 (274)
..+.++|||+|||+++|+++|+++|++||.|.++++.+ |||||+|.+.++|++|++.|||..++|++|+|++
T Consensus 6 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~--------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 77 (90)
T 2dnp_A 6 SGNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVK--------DYAFVHMEKEADAKAAIAQLNGKEVKGKRINVEL 77 (90)
T ss_dssp SCCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEECS--------SCEEEEESCHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEEC--------CEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 34578999999999999999999999999999999973 3999999999999999999999999999999999
Q ss_pred ecCCCCCCC
Q 024012 262 AKTTPKYSR 270 (274)
Q Consensus 262 a~~~~~~~~ 270 (274)
++++++...
T Consensus 78 a~~~~~~~~ 86 (90)
T 2dnp_A 78 STKGQKKSG 86 (90)
T ss_dssp SCCCCCCCS
T ss_pred CCCCCCCCC
Confidence 998865443
No 137
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.82 E-value=2.2e-20 Score=136.43 Aligned_cols=78 Identities=28% Similarity=0.497 Sum_probs=73.7
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEeEEEeecCC
Q 024012 186 KKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVDVAKTT 265 (274)
Q Consensus 186 ~~lfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~d~~~g~~rG~aFV~F~s~~~A~~Ai~~l~g~~l~G~~l~V~~a~~~ 265 (274)
++|||+|||+++|+++|+++|++||.|.++.++++ ++|||||+|.+.++|++|++.|||..+.|+.|+|++++++
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 75 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN-----PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGM 75 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS-----SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC-----CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCC
Confidence 47999999999999999999999999999999977 6899999999999999999999999999999999999987
Q ss_pred CCC
Q 024012 266 PKY 268 (274)
Q Consensus 266 ~~~ 268 (274)
++.
T Consensus 76 ~~~ 78 (101)
T 2hvz_A 76 PRR 78 (101)
T ss_dssp CCS
T ss_pred CCc
Confidence 643
No 138
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.82 E-value=5.4e-20 Score=133.46 Aligned_cols=81 Identities=17% Similarity=0.274 Sum_probs=73.8
Q ss_pred CccccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEeEEEe
Q 024012 182 QIKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVDV 261 (274)
Q Consensus 182 ~~~~~~lfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~d~~~g~~rG~aFV~F~s~~~A~~Ai~~l~g~~l~G~~l~V~~ 261 (274)
....++|||+|||+.+++++|+++|++||.|. +.++.+ .++|||||+|.+.++|++|++.|||..++|++|+|++
T Consensus 16 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~----~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 90 (97)
T 2e5j_A 16 APLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTWQ----GPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVAL 90 (97)
T ss_dssp SCCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEEE----TTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEE
T ss_pred CCCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEcC----CCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 34578999999999999999999999999997 677754 6789999999999999999999999999999999999
Q ss_pred ecCCCC
Q 024012 262 AKTTPK 267 (274)
Q Consensus 262 a~~~~~ 267 (274)
|+++++
T Consensus 91 a~~~~~ 96 (97)
T 2e5j_A 91 ARQQRD 96 (97)
T ss_dssp CCCCCC
T ss_pred cCCCCC
Confidence 998764
No 139
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.82 E-value=5.6e-20 Score=138.28 Aligned_cols=82 Identities=21% Similarity=0.222 Sum_probs=76.8
Q ss_pred CccccEEEEcCCCCCCCHHHHHHHHhccCC---eEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEeE
Q 024012 182 QIKTKKLFVTGLSFYTSEKTLRAAFEGFGE---LVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIV 258 (274)
Q Consensus 182 ~~~~~~lfV~nLp~~~te~~L~~~F~~fG~---i~~v~i~~d~~~g~~rG~aFV~F~s~~~A~~Ai~~l~g~~l~G~~l~ 258 (274)
....++|||+|||+++|+++|+++|++||. |..|+|++++. |+++|||||+|.+.++|++||+ |||..|+|+.|+
T Consensus 14 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~ 91 (118)
T 2db1_A 14 GGEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTRE-GRQSGEAFVELESEDDVKLALK-KDRESMGHRYIE 91 (118)
T ss_dssp BCCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSS-SCEEEEEEEEBSSHHHHHHHGG-GTTEEETTEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCeECCeEEE
Confidence 345789999999999999999999999999 89999999985 9999999999999999999997 999999999999
Q ss_pred EEeecCC
Q 024012 259 VDVAKTT 265 (274)
Q Consensus 259 V~~a~~~ 265 (274)
|.++.++
T Consensus 92 V~~a~~~ 98 (118)
T 2db1_A 92 VFKSHRT 98 (118)
T ss_dssp EEEECHH
T ss_pred EEECCHH
Confidence 9999764
No 140
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.82 E-value=7.7e-20 Score=133.09 Aligned_cols=84 Identities=30% Similarity=0.408 Sum_probs=76.7
Q ss_pred CccccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEeEEEe
Q 024012 182 QIKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVDV 261 (274)
Q Consensus 182 ~~~~~~lfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~d~~~g~~rG~aFV~F~s~~~A~~Ai~~l~g~~l~G~~l~V~~ 261 (274)
..+.++|||+|||+.+++++|+++|++||.|.++.+.++ +|||||+|.+.++|++|++.|||..+.|++|+|.|
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~------kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~ 85 (99)
T 2cpj_A 12 FTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD------KGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRF 85 (99)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT------TTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC------CCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEE
Confidence 345789999999999999999999999999999999854 78999999999999999999999999999999999
Q ss_pred ecCCCCCCCC
Q 024012 262 AKTTPKYSRG 271 (274)
Q Consensus 262 a~~~~~~~~~ 271 (274)
|+++.....+
T Consensus 86 a~~~~~~~~g 95 (99)
T 2cpj_A 86 ACHSASLTSG 95 (99)
T ss_dssp SSCCSCCCCC
T ss_pred cCCCCCCCCC
Confidence 9998765444
No 141
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.81 E-value=7e-20 Score=135.58 Aligned_cols=82 Identities=20% Similarity=0.326 Sum_probs=75.7
Q ss_pred CCccccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEeEEE
Q 024012 181 TQIKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVD 260 (274)
Q Consensus 181 ~~~~~~~lfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~d~~~g~~rG~aFV~F~s~~~A~~Ai~~l~g~~l~G~~l~V~ 260 (274)
......+|||+|||+++|+++|+++|++| .|.+|.|+.|+ +|+++|||||+|.+.++|++|| .|||..++||.|.|.
T Consensus 12 ~~~~~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~ 88 (109)
T 2dnn_A 12 INPDDLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDH-VGRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQRYVEVS 88 (109)
T ss_dssp CCHHHHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCT-TCCCCSEEEEECSSHHHHHHHH-HTTTEEETTEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECC-CCCCCeEEEEEECCHHHHHHHH-hcCCCeECCeEEEEE
Confidence 33456899999999999999999999999 89999999998 5999999999999999999999 799999999999999
Q ss_pred eecCC
Q 024012 261 VAKTT 265 (274)
Q Consensus 261 ~a~~~ 265 (274)
.+.++
T Consensus 89 ~a~~~ 93 (109)
T 2dnn_A 89 PATER 93 (109)
T ss_dssp ECCHH
T ss_pred ECCcc
Confidence 88754
No 142
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.81 E-value=6.7e-20 Score=132.58 Aligned_cols=82 Identities=28% Similarity=0.380 Sum_probs=74.6
Q ss_pred CccccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEeEEEe
Q 024012 182 QIKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVDV 261 (274)
Q Consensus 182 ~~~~~~lfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~d~~~g~~rG~aFV~F~s~~~A~~Ai~~l~g~~l~G~~l~V~~ 261 (274)
..+.++|||+|||+.+++++|+++|++||.|..+ ..++.++|||||+|.+.++|.+|+..|||..++|++|+|++
T Consensus 13 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 87 (96)
T 1fjc_A 13 VRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYY 87 (96)
T ss_dssp TTGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE-----EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe-----CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 3458899999999999999999999999988766 23789999999999999999999999999999999999999
Q ss_pred ecCCCCC
Q 024012 262 AKTTPKY 268 (274)
Q Consensus 262 a~~~~~~ 268 (274)
|+++.+.
T Consensus 88 a~~~~~~ 94 (96)
T 1fjc_A 88 TGEKGGT 94 (96)
T ss_dssp CSSSCCC
T ss_pred cCCCCCC
Confidence 9987653
No 143
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=6.7e-20 Score=131.84 Aligned_cols=83 Identities=25% Similarity=0.390 Sum_probs=73.2
Q ss_pred ccccEEEEcCCCCCCCHHHHHHHHhccCC-eEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCC-ceeCCEEeEEE
Q 024012 183 IKTKKLFVTGLSFYTSEKTLRAAFEGFGE-LVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNG-KIINGWMIVVD 260 (274)
Q Consensus 183 ~~~~~lfV~nLp~~~te~~L~~~F~~fG~-i~~v~i~~d~~~g~~rG~aFV~F~s~~~A~~Ai~~l~g-~~l~G~~l~V~ 260 (274)
...++|||+|||+++|+++|+++|++||. |..+.+. ++|||||+|.+.++|++|++.||| ..++|++|+|+
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~-------~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~ 78 (93)
T 2cqh_A 6 SGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL-------KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVD 78 (93)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE-------ETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc-------CCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEEE
Confidence 34789999999999999999999999999 6655552 478999999999999999999999 99999999999
Q ss_pred eecCCCCCCCCC
Q 024012 261 VAKTTPKYSRGR 272 (274)
Q Consensus 261 ~a~~~~~~~~~r 272 (274)
||++++...+++
T Consensus 79 ~a~~~~~~~~~~ 90 (93)
T 2cqh_A 79 YSVSKKLRSSGP 90 (93)
T ss_dssp ECCCCCCCCCSC
T ss_pred EccCccccCCCC
Confidence 999887655443
No 144
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=2.8e-20 Score=141.16 Aligned_cols=83 Identities=18% Similarity=0.240 Sum_probs=76.9
Q ss_pred CccccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEeEEEe
Q 024012 182 QIKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVDV 261 (274)
Q Consensus 182 ~~~~~~lfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~d~~~g~~rG~aFV~F~s~~~A~~Ai~~l~g~~l~G~~l~V~~ 261 (274)
.....+|||+|||+++|+++|+++|++||.|..+.++.+..+|+++|||||+|.+.++|.+||. |||..|+|+.|.|.+
T Consensus 22 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~~ 100 (124)
T 1wel_A 22 HEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQVHP 100 (124)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEE
Confidence 3457899999999999999999999999999987777777799999999999999999999998 999999999999999
Q ss_pred ecCC
Q 024012 262 AKTT 265 (274)
Q Consensus 262 a~~~ 265 (274)
|.++
T Consensus 101 a~~~ 104 (124)
T 1wel_A 101 ITKK 104 (124)
T ss_dssp ECHH
T ss_pred CCHH
Confidence 9864
No 145
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.81 E-value=2.7e-19 Score=131.18 Aligned_cols=77 Identities=40% Similarity=0.576 Sum_probs=72.0
Q ss_pred ccccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEeEEEee
Q 024012 183 IKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVDVA 262 (274)
Q Consensus 183 ~~~~~lfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~d~~~g~~rG~aFV~F~s~~~A~~Ai~~l~g~~l~G~~l~V~~a 262 (274)
.+.++|||+|||+++|+++|+++|++||.|..+.++ +|||||+|.+.++|++|++.|||..|.|++|+|.||
T Consensus 9 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~--------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 80 (103)
T 2dgu_A 9 AKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKL--------KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFA 80 (103)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEEC--------SSCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEEc
Confidence 457899999999999999999999999999999987 459999999999999999999999999999999999
Q ss_pred cCCCC
Q 024012 263 KTTPK 267 (274)
Q Consensus 263 ~~~~~ 267 (274)
+++..
T Consensus 81 ~~~~~ 85 (103)
T 2dgu_A 81 KPPDQ 85 (103)
T ss_dssp CCCCC
T ss_pred CCCcc
Confidence 98754
No 146
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.81 E-value=3.4e-20 Score=142.61 Aligned_cols=83 Identities=20% Similarity=0.203 Sum_probs=77.5
Q ss_pred CCccccEEEEcCCCCCCCHHHHHHHHhccCC---eEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEe
Q 024012 181 TQIKTKKLFVTGLSFYTSEKTLRAAFEGFGE---LVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMI 257 (274)
Q Consensus 181 ~~~~~~~lfV~nLp~~~te~~L~~~F~~fG~---i~~v~i~~d~~~g~~rG~aFV~F~s~~~A~~Ai~~l~g~~l~G~~l 257 (274)
......+|||+|||+++|+++|+++|++||. |.+|+|++|+. |+++|||||+|.+.++|++||+ |||..|+||.|
T Consensus 40 ~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~-g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~i 117 (136)
T 2hgl_A 40 EGGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTRE-GRQSGEAFVELGSEDDVKMALK-KDRESMGHRYI 117 (136)
T ss_dssp SCCTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSS-SCEEEEEEEECSSHHHHHHHHT-TTEEESSSSEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCEECCEEE
Confidence 3445789999999999999999999999999 89999999986 9999999999999999999998 99999999999
Q ss_pred EEEeecCC
Q 024012 258 VVDVAKTT 265 (274)
Q Consensus 258 ~V~~a~~~ 265 (274)
+|.+|.++
T Consensus 118 ~V~~a~~~ 125 (136)
T 2hgl_A 118 EVFKSHRT 125 (136)
T ss_dssp EEEECCHH
T ss_pred EEEECChH
Confidence 99998764
No 147
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.81 E-value=1.9e-19 Score=149.12 Aligned_cols=84 Identities=26% Similarity=0.432 Sum_probs=79.2
Q ss_pred ccccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEeEEEee
Q 024012 183 IKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVDVA 262 (274)
Q Consensus 183 ~~~~~lfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~d~~~g~~rG~aFV~F~s~~~A~~Ai~~l~g~~l~G~~l~V~~a 262 (274)
.+.++|||+|||+++|+++|+++|++||+|++|+|++|+.+|+++|||||+|.+.++|.+|++.+||..+.|+.|++.++
T Consensus 13 ~p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~~ 92 (213)
T 4f02_A 13 YPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWS 92 (213)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCcccccccc
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cCCC
Q 024012 263 KTTP 266 (274)
Q Consensus 263 ~~~~ 266 (274)
....
T Consensus 93 ~~~~ 96 (213)
T 4f02_A 93 QRDP 96 (213)
T ss_dssp CCCT
T ss_pred cccc
Confidence 8654
No 148
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.81 E-value=7.1e-21 Score=173.57 Aligned_cols=84 Identities=36% Similarity=0.613 Sum_probs=80.3
Q ss_pred ccccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEeEEEee
Q 024012 183 IKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVDVA 262 (274)
Q Consensus 183 ~~~~~lfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~d~~~g~~rG~aFV~F~s~~~A~~Ai~~l~g~~l~G~~l~V~~a 262 (274)
.+.++|||+|||+.+|+++|.++|++||.|+.|.|+.|+.+|.++|||||+|.+.++|.+||..|||..|+|+.|.|.||
T Consensus 100 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~a 179 (437)
T 3pgw_S 100 DAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVE 179 (437)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEEe
Confidence 34789999999999999999999999999999999999889999999999999999999999999999999999999999
Q ss_pred cCCC
Q 024012 263 KTTP 266 (274)
Q Consensus 263 ~~~~ 266 (274)
++..
T Consensus 180 ~~~~ 183 (437)
T 3pgw_S 180 RGRT 183 (437)
T ss_pred CCCC
Confidence 9754
No 149
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.81 E-value=6.3e-20 Score=134.28 Aligned_cols=83 Identities=25% Similarity=0.456 Sum_probs=77.6
Q ss_pred CccccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEeEEEe
Q 024012 182 QIKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVDV 261 (274)
Q Consensus 182 ~~~~~~lfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~d~~~g~~rG~aFV~F~s~~~A~~Ai~~l~g~~l~G~~l~V~~ 261 (274)
....++|||+|||+++++++|+++|++||.|.++++++++ +|.++|||||+|.+.++|++|+. +|..++|+.|.|.+
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~~l~v~~ 82 (102)
T 2xs2_A 6 KIMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR-TGVSKGYGFVSFYNDVDVQKIVE--SQINFHGKKLKLGP 82 (102)
T ss_dssp EEEEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSCCCHHHHTT--CCCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHh--CCCeECCEEEEEEE
Confidence 3457899999999999999999999999999999999998 99999999999999999999997 99999999999999
Q ss_pred ecCCCC
Q 024012 262 AKTTPK 267 (274)
Q Consensus 262 a~~~~~ 267 (274)
+.++..
T Consensus 83 a~~~~~ 88 (102)
T 2xs2_A 83 AIRKQN 88 (102)
T ss_dssp EEECC-
T ss_pred CCcCcc
Confidence 987654
No 150
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.80 E-value=1e-19 Score=132.84 Aligned_cols=77 Identities=21% Similarity=0.396 Sum_probs=72.1
Q ss_pred ccccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEeEEEee
Q 024012 183 IKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVDVA 262 (274)
Q Consensus 183 ~~~~~lfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~d~~~g~~rG~aFV~F~s~~~A~~Ai~~l~g~~l~G~~l~V~~a 262 (274)
...++|||+|||.++++++|+++|++||.|.++++. .++|||||+|.+.++|.+|+..|||..++|++|+|+||
T Consensus 25 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~------~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 98 (101)
T 2la4_A 25 PRVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHY------PEKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWG 98 (101)
T ss_dssp SSCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCBC
T ss_pred CCCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEe------cCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEec
Confidence 346899999999999999999999999999999987 35789999999999999999999999999999999999
Q ss_pred cCC
Q 024012 263 KTT 265 (274)
Q Consensus 263 ~~~ 265 (274)
+++
T Consensus 99 ~~~ 101 (101)
T 2la4_A 99 KER 101 (101)
T ss_dssp CCC
T ss_pred cCC
Confidence 864
No 151
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.80 E-value=9.2e-20 Score=135.07 Aligned_cols=82 Identities=22% Similarity=0.262 Sum_probs=73.1
Q ss_pred CccccEEEEcCCCCC-CCHHHHHHHHhccCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhC--CceeCCEEeE
Q 024012 182 QIKTKKLFVTGLSFY-TSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMN--GKIINGWMIV 258 (274)
Q Consensus 182 ~~~~~~lfV~nLp~~-~te~~L~~~F~~fG~i~~v~i~~d~~~g~~rG~aFV~F~s~~~A~~Ai~~l~--g~~l~G~~l~ 258 (274)
..++++|||+|||++ +++++|+++|++||.|.+|.|++ +||||||+|.+.++|++|++.|+ +..|.|++|+
T Consensus 22 ~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~------~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~ 95 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMR------MKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVK 95 (112)
T ss_dssp SCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEET------TTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCE
T ss_pred CCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEec------CCCEEEEEECCHHHHHHHHHHhccCCceECCEEEE
Confidence 445889999999998 99999999999999999999974 47899999999999999999886 4569999999
Q ss_pred EEeecCCCCCC
Q 024012 259 VDVAKTTPKYS 269 (274)
Q Consensus 259 V~~a~~~~~~~ 269 (274)
|+||+.+....
T Consensus 96 V~~a~~~~~~~ 106 (112)
T 1x4f_A 96 VDLSEKYKKLV 106 (112)
T ss_dssp EEEECSCSSSS
T ss_pred EEECccccccc
Confidence 99999876543
No 152
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.80 E-value=2.4e-20 Score=130.76 Aligned_cols=74 Identities=20% Similarity=0.343 Sum_probs=68.4
Q ss_pred ccEEEEcCCCCCC------CHHHHHHHHhccCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCE-Ee
Q 024012 185 TKKLFVTGLSFYT------SEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGW-MI 257 (274)
Q Consensus 185 ~~~lfV~nLp~~~------te~~L~~~F~~fG~i~~v~i~~d~~~g~~rG~aFV~F~s~~~A~~Ai~~l~g~~l~G~-~l 257 (274)
+++|||+|||..+ ++++|+++|++||.|.++.+++ .+|+++|||||+|.+.++|.+|++.|||..++|+ +|
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~~--~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l 78 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPE--EDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTF 78 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECCC--BTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCC
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEecC--CCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeE
Confidence 3689999999999 7899999999999999999873 4899999999999999999999999999999999 88
Q ss_pred EEE
Q 024012 258 VVD 260 (274)
Q Consensus 258 ~V~ 260 (274)
+|+
T Consensus 79 ~V~ 81 (81)
T 2krb_A 79 RVN 81 (81)
T ss_dssp CCC
T ss_pred EeC
Confidence 763
No 153
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.80 E-value=5.9e-20 Score=133.00 Aligned_cols=81 Identities=16% Similarity=0.378 Sum_probs=72.1
Q ss_pred CccccEEEEcCCCC-CCCHHHHHHHHhccCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEeEEE
Q 024012 182 QIKTKKLFVTGLSF-YTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVD 260 (274)
Q Consensus 182 ~~~~~~lfV~nLp~-~~te~~L~~~F~~fG~i~~v~i~~d~~~g~~rG~aFV~F~s~~~A~~Ai~~l~g~~l~G~~l~V~ 260 (274)
..+.++|||+|||+ .+++++|+++|++||.|.++.+. +|||||+|.+.++|++|++.|||..+.|++|+|+
T Consensus 7 ~~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 78 (96)
T 2kvi_A 7 IPPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIECESQEMNFGKKLILE 78 (96)
T ss_dssp --CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE--------TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEE
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEE
Confidence 34588999999998 99999999999999999999984 6899999999999999999999999999999999
Q ss_pred eecCCCCCCC
Q 024012 261 VAKTTPKYSR 270 (274)
Q Consensus 261 ~a~~~~~~~~ 270 (274)
+++++++...
T Consensus 79 ~a~~~~~~~~ 88 (96)
T 2kvi_A 79 VSSSNARPQF 88 (96)
T ss_dssp EEECCCC---
T ss_pred EcCcCCCCCC
Confidence 9998765443
No 154
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=7.1e-19 Score=127.48 Aligned_cols=81 Identities=28% Similarity=0.526 Sum_probs=73.5
Q ss_pred ccccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEeEEEee
Q 024012 183 IKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVDVA 262 (274)
Q Consensus 183 ~~~~~lfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~d~~~g~~rG~aFV~F~s~~~A~~Ai~~l~g~~l~G~~l~V~~a 262 (274)
.+.++|||+|| ++|+++|+++|++||.|.+|.|. .++|||||+|.+.++|.+|+..|||..+.|++|+|.||
T Consensus 13 ~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a 84 (97)
T 1x5p_A 13 RKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIA 84 (97)
T ss_dssp CCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE------TTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEECC
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec------CCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEC
Confidence 45789999996 89999999999999999999884 46889999999999999999999999999999999999
Q ss_pred cCCCCCCCC
Q 024012 263 KTTPKYSRG 271 (274)
Q Consensus 263 ~~~~~~~~~ 271 (274)
++++...+.
T Consensus 85 ~~~~~~~~~ 93 (97)
T 1x5p_A 85 RKQPMLDSG 93 (97)
T ss_dssp SSCCCCCSS
T ss_pred CCCCCCCCC
Confidence 988765443
No 155
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.80 E-value=9.1e-21 Score=146.28 Aligned_cols=83 Identities=23% Similarity=0.261 Sum_probs=76.2
Q ss_pred CccccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEeEEEe
Q 024012 182 QIKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVDV 261 (274)
Q Consensus 182 ~~~~~~lfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~d~~~g~~rG~aFV~F~s~~~A~~Ai~~l~g~~l~G~~l~V~~ 261 (274)
....++|||+|||+++|+++|+++|++|| |++|.|++|+. |+++|||||+|.+.++|++|| .+|+..|+|+.|+|.+
T Consensus 43 ~~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~-g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~V~~ 119 (139)
T 2hgn_A 43 STTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPD-GRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIELFL 119 (139)
T ss_dssp --CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSS-SCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCCCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCC-CCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEEEEE
Confidence 34578999999999999999999999999 77999999984 999999999999999999999 8999999999999999
Q ss_pred ecCCCC
Q 024012 262 AKTTPK 267 (274)
Q Consensus 262 a~~~~~ 267 (274)
+.+...
T Consensus 120 a~~~~~ 125 (139)
T 2hgn_A 120 NSTTGA 125 (139)
T ss_dssp CCCSCC
T ss_pred CCCCCC
Confidence 998754
No 156
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.80 E-value=1.6e-20 Score=129.48 Aligned_cols=75 Identities=31% Similarity=0.521 Sum_probs=71.8
Q ss_pred EEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEeEEEee
Q 024012 187 KLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVDVA 262 (274)
Q Consensus 187 ~lfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~d~~~g~~rG~aFV~F~s~~~A~~Ai~~l~g~~l~G~~l~V~~a 262 (274)
+|||+|||+++++++|+++|++||.|.++.+++++.+|.++|||||+|.+.++|.+|++ ++|..++|+.|.|.+|
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~-~~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME-KKYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHT-TSSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHH-hCCCeECCEEEEEEEC
Confidence 58999999999999999999999999999999999899999999999999999999996 5999999999999986
No 157
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.80 E-value=6.9e-20 Score=153.41 Aligned_cols=81 Identities=21% Similarity=0.450 Sum_probs=77.1
Q ss_pred cccEEEEcCCCCCCCHHHHHHHHhccC--CeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEeEEEe
Q 024012 184 KTKKLFVTGLSFYTSEKTLRAAFEGFG--ELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVDV 261 (274)
Q Consensus 184 ~~~~lfV~nLp~~~te~~L~~~F~~fG--~i~~v~i~~d~~~g~~rG~aFV~F~s~~~A~~Ai~~l~g~~l~G~~l~V~~ 261 (274)
..++|||+|||+++|+++|+++|++|| .|++|+|++|+.+|++||||||+|.+.++|++||+.|||..|.|+.|+|.+
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~ 146 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTP 146 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEE
Confidence 467999999999999999999999999 999999999999999999999999999999999999999999999999999
Q ss_pred ecC
Q 024012 262 AKT 264 (274)
Q Consensus 262 a~~ 264 (274)
|++
T Consensus 147 a~~ 149 (229)
T 3q2s_C 147 VNK 149 (229)
T ss_dssp CCH
T ss_pred CCC
Confidence 875
No 158
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.79 E-value=7.6e-19 Score=138.99 Aligned_cols=83 Identities=28% Similarity=0.472 Sum_probs=79.8
Q ss_pred ccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEeEEEeecC
Q 024012 185 TKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVDVAKT 264 (274)
Q Consensus 185 ~~~lfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~d~~~g~~rG~aFV~F~s~~~A~~Ai~~l~g~~l~G~~l~V~~a~~ 264 (274)
.++|||+|||+++++++|+++|++||.|.++++++++.+|.++|||||+|.+.++|.+|++.|+|..+.|++|+|.++.+
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 81 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARP 81 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecCC
Confidence 57899999999999999999999999999999999998999999999999999999999999999999999999999987
Q ss_pred CCC
Q 024012 265 TPK 267 (274)
Q Consensus 265 ~~~ 267 (274)
...
T Consensus 82 ~~~ 84 (167)
T 1fxl_A 82 SSA 84 (167)
T ss_dssp CCG
T ss_pred Ccc
Confidence 653
No 159
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.79 E-value=1.4e-19 Score=135.35 Aligned_cols=81 Identities=15% Similarity=0.310 Sum_probs=75.2
Q ss_pred ccccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEeEEEee
Q 024012 183 IKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVDVA 262 (274)
Q Consensus 183 ~~~~~lfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~d~~~g~~rG~aFV~F~s~~~A~~Ai~~l~g~~l~G~~l~V~~a 262 (274)
..+++|||+|||+.+++++|+++|++||.|.++.++++ +.++|||||+|.+.++|.+|+..|||..++|+.|.|.|+
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 82 (115)
T 3lqv_A 6 EVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNT---PETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLYY 82 (115)
T ss_dssp TCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECS---TTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEe
Confidence 34789999999999999999999999999999999875 456999999999999999999999999999999999999
Q ss_pred cCCC
Q 024012 263 KTTP 266 (274)
Q Consensus 263 ~~~~ 266 (274)
+++.
T Consensus 83 ~~~~ 86 (115)
T 3lqv_A 83 NANR 86 (115)
T ss_dssp CHHH
T ss_pred cCCh
Confidence 8754
No 160
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.79 E-value=6.3e-19 Score=139.82 Aligned_cols=85 Identities=26% Similarity=0.390 Sum_probs=80.7
Q ss_pred cccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEeEEEeec
Q 024012 184 KTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVDVAK 263 (274)
Q Consensus 184 ~~~~lfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~d~~~g~~rG~aFV~F~s~~~A~~Ai~~l~g~~l~G~~l~V~~a~ 263 (274)
++++|||+|||+++++++|+++|++||.|.++++++++.+|.++|||||+|.+.++|.+|++.|+|..+.|++|.|.|+.
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 81 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYAR 81 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecC
Confidence 36899999999999999999999999999999999999899999999999999999999999999999999999999999
Q ss_pred CCCCC
Q 024012 264 TTPKY 268 (274)
Q Consensus 264 ~~~~~ 268 (274)
+....
T Consensus 82 ~~~~~ 86 (168)
T 1b7f_A 82 PGGES 86 (168)
T ss_dssp CCSST
T ss_pred CCccc
Confidence 76543
No 161
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.79 E-value=8.9e-20 Score=141.75 Aligned_cols=84 Identities=32% Similarity=0.406 Sum_probs=73.2
Q ss_pred ccccEEEEcCCCCCCCHHHHHHHHhccCCeEEEE--E---EecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEe
Q 024012 183 IKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVK--I---IMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMI 257 (274)
Q Consensus 183 ~~~~~lfV~nLp~~~te~~L~~~F~~fG~i~~v~--i---~~d~~~g~~rG~aFV~F~s~~~A~~Ai~~l~g~~l~G~~l 257 (274)
.++++|||+|||+.+|+++|+++|++||.|..+. + ++...+|.++|||||+|.+.++|.+|+..|||..+.|++|
T Consensus 43 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l 122 (143)
T 3egn_A 43 EPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKPM 122 (143)
T ss_dssp SCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETTEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCcEE
Confidence 3478999999999999999999999999987641 1 1112378999999999999999999999999999999999
Q ss_pred EEEeecCCC
Q 024012 258 VVDVAKTTP 266 (274)
Q Consensus 258 ~V~~a~~~~ 266 (274)
.|.||++..
T Consensus 123 ~V~~a~~~~ 131 (143)
T 3egn_A 123 VVQFARSAR 131 (143)
T ss_dssp EEEECCCSC
T ss_pred EEEECCCCC
Confidence 999998754
No 162
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.79 E-value=4.6e-20 Score=136.31 Aligned_cols=82 Identities=13% Similarity=0.159 Sum_probs=76.9
Q ss_pred CccccEEEEcCCCCCCCHHHHHHHHhccCC---eEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEeE
Q 024012 182 QIKTKKLFVTGLSFYTSEKTLRAAFEGFGE---LVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIV 258 (274)
Q Consensus 182 ~~~~~~lfV~nLp~~~te~~L~~~F~~fG~---i~~v~i~~d~~~g~~rG~aFV~F~s~~~A~~Ai~~l~g~~l~G~~l~ 258 (274)
.....+|||+|||+++|+++|+++|++||. |..|+|++|+. |+++|||||+|.+.++|++||. |||..++|+.|+
T Consensus 8 ~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~ 85 (107)
T 2lmi_A 8 VDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRD-GKRRGDALIEMESEQDVQKALE-KHRMYMGQRYVE 85 (107)
T ss_dssp CSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTT-STTCSEEEEEBSSHHHHHHHHT-TTTCCSSSSCCC
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCC-CCEeeEEEEEECCHHHHHHHHH-hCcceeCCeEEE
Confidence 345789999999999999999999999998 89999999986 9999999999999999999998 999999999999
Q ss_pred EEeecCC
Q 024012 259 VDVAKTT 265 (274)
Q Consensus 259 V~~a~~~ 265 (274)
|.+|.++
T Consensus 86 V~~a~~~ 92 (107)
T 2lmi_A 86 VYEINNE 92 (107)
T ss_dssp CEECCHH
T ss_pred EEECCHH
Confidence 9999864
No 163
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.79 E-value=5.1e-19 Score=127.88 Aligned_cols=80 Identities=15% Similarity=0.246 Sum_probs=73.1
Q ss_pred ccccEEEEcCCCCCCCHHHHHHHHhccCCeEEE-EEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEeEEEe
Q 024012 183 IKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEV-KIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVDV 261 (274)
Q Consensus 183 ~~~~~lfV~nLp~~~te~~L~~~F~~fG~i~~v-~i~~d~~~g~~rG~aFV~F~s~~~A~~Ai~~l~g~~l~G~~l~V~~ 261 (274)
...++|||+|||+++++++|+++|++||.|.++ .++.++.+| .|||+|.+.++|.+|+..|||..++|++|+|++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~----~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~ 88 (96)
T 2e44_A 13 QRIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSETA----VVNVTYSSKDQARQALDKLNGFQLENFTLKVAY 88 (96)
T ss_dssp CSCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSSE----EEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEE
T ss_pred CCCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCC----EEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 447899999999999999999999999999999 488776443 499999999999999999999999999999999
Q ss_pred ecCCC
Q 024012 262 AKTTP 266 (274)
Q Consensus 262 a~~~~ 266 (274)
|.++.
T Consensus 89 a~~~~ 93 (96)
T 2e44_A 89 IPDEM 93 (96)
T ss_dssp CCCCC
T ss_pred cCccc
Confidence 99874
No 164
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.78 E-value=3.5e-19 Score=132.46 Aligned_cols=78 Identities=15% Similarity=0.139 Sum_probs=72.3
Q ss_pred ccccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEeEEEee
Q 024012 183 IKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVDVA 262 (274)
Q Consensus 183 ~~~~~lfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~d~~~g~~rG~aFV~F~s~~~A~~Ai~~l~g~~l~G~~l~V~~a 262 (274)
...++|||+|||+.+++++|+++|++||.|.+|.|+. ++|||||+|.+.++|++|++.|||..+.|++|.|+||
T Consensus 8 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 81 (111)
T 1whx_A 8 RSKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE------GGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWA 81 (111)
T ss_dssp EEEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS------SSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC------CCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 3478999999999999999999999999999998874 5789999999999999999999999999999999999
Q ss_pred cCCC
Q 024012 263 KTTP 266 (274)
Q Consensus 263 ~~~~ 266 (274)
+...
T Consensus 82 ~~~~ 85 (111)
T 1whx_A 82 PIGV 85 (111)
T ss_dssp ETTT
T ss_pred CCCc
Confidence 8753
No 165
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.78 E-value=3.6e-19 Score=133.01 Aligned_cols=79 Identities=20% Similarity=0.277 Sum_probs=72.4
Q ss_pred cEEEEcCC----CCCCCHHHHHHHHhccCCeEEEEEEecCCCCCcceEEEEEeCC----HHH----HHHHHH--HhCCce
Q 024012 186 KKLFVTGL----SFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTT----EEA----ASAALK--EMNGKI 251 (274)
Q Consensus 186 ~~lfV~nL----p~~~te~~L~~~F~~fG~i~~v~i~~d~~~g~~rG~aFV~F~s----~~~----A~~Ai~--~l~g~~ 251 (274)
.+|||+|| |+.+++++|+++|++||+|.++.++.|+.||.++|||||+|.+ +++ |.+|+. .|+|..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 68999999 9999999999999999999999999999999999999999996 333 899998 789999
Q ss_pred eCCEEeEEEeecC
Q 024012 252 INGWMIVVDVAKT 264 (274)
Q Consensus 252 l~G~~l~V~~a~~ 264 (274)
|+|++|+|.+.+.
T Consensus 83 I~Gr~irV~ln~~ 95 (136)
T 2j8a_A 83 IMGFKFEVILNKH 95 (136)
T ss_dssp ETTEEEEEEECCT
T ss_pred ecCcEEEEEECcc
Confidence 9999999998664
No 166
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=6.2e-19 Score=130.76 Aligned_cols=78 Identities=24% Similarity=0.327 Sum_probs=71.3
Q ss_pred ccccEEEE--cCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcee-----CCE
Q 024012 183 IKTKKLFV--TGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKII-----NGW 255 (274)
Q Consensus 183 ~~~~~lfV--~nLp~~~te~~L~~~F~~fG~i~~v~i~~d~~~g~~rG~aFV~F~s~~~A~~Ai~~l~g~~l-----~G~ 255 (274)
.++++||| +||++.+++++|+++|++||.|.+|.|+. +||||||+|.+.++|++|++.|||+.+ .|+
T Consensus 23 ~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~------~rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~ 96 (114)
T 2cq2_A 23 YATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKI 96 (114)
T ss_dssp SCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCT------TCSCEEEEESSHHHHHHHHHHTTTCEEECTTSCEE
T ss_pred CCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCEEccccCCCc
Confidence 35788999 77999999999999999999999998763 378999999999999999999999998 799
Q ss_pred EeEEEeecCCC
Q 024012 256 MIVVDVAKTTP 266 (274)
Q Consensus 256 ~l~V~~a~~~~ 266 (274)
+|.|.|++..+
T Consensus 97 ~l~v~~a~~~p 107 (114)
T 2cq2_A 97 TLYLNFVEKVQ 107 (114)
T ss_dssp ECEEEEESCCC
T ss_pred EEEEEecccCc
Confidence 99999998765
No 167
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.78 E-value=1.4e-18 Score=125.22 Aligned_cols=78 Identities=23% Similarity=0.315 Sum_probs=70.9
Q ss_pred cccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEeEEEeec
Q 024012 184 KTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVDVAK 263 (274)
Q Consensus 184 ~~~~lfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~d~~~g~~rG~aFV~F~s~~~A~~Ai~~l~g~~l~G~~l~V~~a~ 263 (274)
..++|||+|||+++++++|+++|++||.|.+| +.++.+|. ||||+|.+.++|.+|+. |||..++|+.|.|.+|.
T Consensus 7 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v--~~~~~~g~---~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~a~ 80 (94)
T 2e5g_A 7 GLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV--VMDKDKGV---FAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRPRE 80 (94)
T ss_dssp TCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE--EECSSSCC---EEEEEESSHHHHHHHHT-CSCCEETTEECCCBCSC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE--EEcCCCCc---EEEEEECCHHHHHHHHh-cCCeEECCEEEEEEECC
Confidence 46799999999999999999999999999987 66665665 99999999999999998 99999999999999998
Q ss_pred CCCC
Q 024012 264 TTPK 267 (274)
Q Consensus 264 ~~~~ 267 (274)
++..
T Consensus 81 ~~~~ 84 (94)
T 2e5g_A 81 QKEF 84 (94)
T ss_dssp CSCC
T ss_pred cCCC
Confidence 7653
No 168
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.78 E-value=5.3e-19 Score=142.27 Aligned_cols=85 Identities=25% Similarity=0.369 Sum_probs=80.1
Q ss_pred CCccccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEeEEE
Q 024012 181 TQIKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVD 260 (274)
Q Consensus 181 ~~~~~~~lfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~d~~~g~~rG~aFV~F~s~~~A~~Ai~~l~g~~l~G~~l~V~ 260 (274)
.....++|||+|||+.+++++|+++|++||.|+.|.|..++ +|.++|||||+|.+.++|.+|++.|||..|+|+.|+|.
T Consensus 84 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~-~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~ 162 (177)
T 2f3j_A 84 GVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQ 162 (177)
T ss_dssp SCTTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCT-TSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 34457899999999999999999999999999999999998 99999999999999999999999999999999999999
Q ss_pred eecCCC
Q 024012 261 VAKTTP 266 (274)
Q Consensus 261 ~a~~~~ 266 (274)
||.+..
T Consensus 163 ~a~~~~ 168 (177)
T 2f3j_A 163 LVASQI 168 (177)
T ss_dssp EESSGG
T ss_pred EecCCC
Confidence 998753
No 169
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.77 E-value=3.4e-19 Score=134.62 Aligned_cols=80 Identities=19% Similarity=0.270 Sum_probs=74.0
Q ss_pred cccEEEEcCCCCCCCHHHHHHHHhccCCe----EEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEeEE
Q 024012 184 KTKKLFVTGLSFYTSEKTLRAAFEGFGEL----VEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVV 259 (274)
Q Consensus 184 ~~~~lfV~nLp~~~te~~L~~~F~~fG~i----~~v~i~~d~~~g~~rG~aFV~F~s~~~A~~Ai~~l~g~~l~G~~l~V 259 (274)
...+|||+|||+++|+++|+++|++||.| ..|.|+.|+ +|+++|||||+|.+.++|++||+. |+..++||.|.|
T Consensus 22 ~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~-~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~gR~i~V 99 (123)
T 2dha_A 22 NQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYP-DGRPTGDAFVLFACEEYAQNALRK-HKDLLGKRYIEL 99 (123)
T ss_dssp SCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECT-TSCEEEEEEECCSSHHHHHHHHTT-TTEESSSCEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECC-CCCEeeEEEEEECCHHHHHHHHHh-CCCeeCCeEEEE
Confidence 46899999999999999999999999976 689999995 899999999999999999999975 999999999999
Q ss_pred EeecCC
Q 024012 260 DVAKTT 265 (274)
Q Consensus 260 ~~a~~~ 265 (274)
..+.++
T Consensus 100 ~~a~~~ 105 (123)
T 2dha_A 100 FRSTAA 105 (123)
T ss_dssp EEECHH
T ss_pred EECCHH
Confidence 988754
No 170
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.77 E-value=2.8e-18 Score=139.59 Aligned_cols=87 Identities=31% Similarity=0.568 Sum_probs=78.9
Q ss_pred CCCccccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEeEE
Q 024012 180 PTQIKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVV 259 (274)
Q Consensus 180 ~~~~~~~~lfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~d~~~g~~rG~aFV~F~s~~~A~~Ai~~l~g~~l~G~~l~V 259 (274)
......++|||+|||+++|+++|+++|++||.|.+|.|++++.+|.++|||||+|.+.++|.+|++. +|..+.|+.|.|
T Consensus 8 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~-~~~~~~g~~l~v 86 (196)
T 1l3k_A 8 KEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVDGRVVEP 86 (196)
T ss_dssp CCCGGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHT-CSCEETTEECEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhc-CCCEECCEEeee
Confidence 3445688999999999999999999999999999999999998999999999999999999999965 999999999999
Q ss_pred EeecCCCC
Q 024012 260 DVAKTTPK 267 (274)
Q Consensus 260 ~~a~~~~~ 267 (274)
.++.+...
T Consensus 87 ~~~~~~~~ 94 (196)
T 1l3k_A 87 KRAVSRED 94 (196)
T ss_dssp EECCC---
T ss_pred ecccCccc
Confidence 99987643
No 171
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.77 E-value=1.3e-18 Score=136.90 Aligned_cols=79 Identities=19% Similarity=0.328 Sum_probs=72.3
Q ss_pred cccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCC--EEeEEEe
Q 024012 184 KTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIING--WMIVVDV 261 (274)
Q Consensus 184 ~~~~lfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~d~~~g~~rG~aFV~F~s~~~A~~Ai~~l~g~~l~G--~~l~V~~ 261 (274)
...+|||+||++.+|+++|+++|++||.|++|.|..+ .++|||||+|.+.++|++|++.|||..|.| ++|+|+|
T Consensus 45 ~vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k----~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~ 120 (164)
T 1sjr_A 45 PVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK----NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDF 120 (164)
T ss_dssp CEEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEES----SSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEE
T ss_pred ceEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeC----CCCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEE
Confidence 4567999999999999999999999999999998754 368999999999999999999999999965 9999999
Q ss_pred ecCCC
Q 024012 262 AKTTP 266 (274)
Q Consensus 262 a~~~~ 266 (274)
|+++.
T Consensus 121 Ak~~~ 125 (164)
T 1sjr_A 121 SKLTS 125 (164)
T ss_dssp CSSSS
T ss_pred ecCCc
Confidence 99874
No 172
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.77 E-value=1.2e-18 Score=124.05 Aligned_cols=76 Identities=17% Similarity=0.252 Sum_probs=71.0
Q ss_pred cccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEeEEEeec
Q 024012 184 KTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVDVAK 263 (274)
Q Consensus 184 ~~~~lfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~d~~~g~~rG~aFV~F~s~~~A~~Ai~~l~g~~l~G~~l~V~~a~ 263 (274)
..++|||+|||+++++++|+++|++| .|.++++. +++|||||+|.+.++|++|++.|||..++|++|+|+||.
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~ 76 (88)
T 1wg1_A 4 GSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD------RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQP 76 (88)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE------GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe------CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcC
Confidence 36789999999999999999999999 99999884 578999999999999999999999999999999999997
Q ss_pred CCC
Q 024012 264 TTP 266 (274)
Q Consensus 264 ~~~ 266 (274)
...
T Consensus 77 ~~~ 79 (88)
T 1wg1_A 77 TDA 79 (88)
T ss_dssp CCC
T ss_pred CCc
Confidence 754
No 173
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.77 E-value=4e-18 Score=129.26 Aligned_cols=78 Identities=19% Similarity=0.375 Sum_probs=71.5
Q ss_pred cccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCcceE-EEEEeCCHHHHHHHHHHhCCceeCC--EEeEEE
Q 024012 184 KTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGY-AFIEYTTEEAASAALKEMNGKIING--WMIVVD 260 (274)
Q Consensus 184 ~~~~lfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~d~~~g~~rG~-aFV~F~s~~~A~~Ai~~l~g~~l~G--~~l~V~ 260 (274)
....|||+||++.+|+++|+++|++||.|.+|.+..+ ++|| |||+|.+.++|++|++.|||..|.| ++|+|+
T Consensus 27 ~VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~-----~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~ 101 (130)
T 3zzy_A 27 PVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK-----NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRID 101 (130)
T ss_dssp SEEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEE-----TTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEE
T ss_pred ceEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcC-----CCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEE
Confidence 3567889999999999999999999999999988764 3677 9999999999999999999999988 999999
Q ss_pred eecCCC
Q 024012 261 VAKTTP 266 (274)
Q Consensus 261 ~a~~~~ 266 (274)
||+++.
T Consensus 102 ~ak~~~ 107 (130)
T 3zzy_A 102 FSKLTS 107 (130)
T ss_dssp ECSCSS
T ss_pred ecCCCc
Confidence 999864
No 174
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.76 E-value=1.4e-18 Score=122.91 Aligned_cols=73 Identities=21% Similarity=0.338 Sum_probs=66.6
Q ss_pred ccE-EEEcCCCCCCCHHH----HHHHHhcc-CCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEeE
Q 024012 185 TKK-LFVTGLSFYTSEKT----LRAAFEGF-GELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIV 258 (274)
Q Consensus 185 ~~~-lfV~nLp~~~te~~----L~~~F~~f-G~i~~v~i~~d~~~g~~rG~aFV~F~s~~~A~~Ai~~l~g~~l~G~~l~ 258 (274)
..+ |||+|||+.+++++ |+++|++| |.|.+| +| |+|||+|.+.++|++|++.|||..+.||+|+
T Consensus 8 ~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V-------tg---G~AfV~F~~~esA~~A~~~l~G~~l~gr~i~ 77 (96)
T 2diu_A 8 CHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI-------TG---CSAILRFINQDSAERAQKRMENEDVFGNRII 77 (96)
T ss_dssp SSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC-------CT---TCEEEEESSHHHHHHHHHHHTTCCSSSSCCE
T ss_pred cceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE-------ec---CEEEEEECCHHHHHHHHHHhcCCccCCceEE
Confidence 555 99999999999988 55899999 599998 34 8999999999999999999999999999999
Q ss_pred EEeecCCCC
Q 024012 259 VDVAKTTPK 267 (274)
Q Consensus 259 V~~a~~~~~ 267 (274)
|+||+.++.
T Consensus 78 v~~A~~~sd 86 (96)
T 2diu_A 78 VSFTPKNRE 86 (96)
T ss_dssp EESSCCSCC
T ss_pred EEecCCCcc
Confidence 999998864
No 175
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.76 E-value=2e-18 Score=123.18 Aligned_cols=77 Identities=22% Similarity=0.375 Sum_probs=63.7
Q ss_pred CccccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCce--eCCEEeEE
Q 024012 182 QIKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKI--INGWMIVV 259 (274)
Q Consensus 182 ~~~~~~lfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~d~~~g~~rG~aFV~F~s~~~A~~Ai~~l~g~~--l~G~~l~V 259 (274)
..+..+|||+|||+++|+++|+++|++||.|.+++|+++ +||||||+|.+.++|++ |+|.. +.|++|.|
T Consensus 8 ~~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~-----srGfaFV~F~~~~~A~~----~~~~~~~~~g~~v~v 78 (89)
T 3d2w_A 8 HHHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP-----FRAFAFVTFADDKVAQS----LCGEDLIIKGISVHI 78 (89)
T ss_dssp ---CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS-----CCSEEEEEESCHHHHHH----HTTCEEEETTEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC-----CCCEEEEEECCHHHHHH----HcCCCcccCCEEEEE
Confidence 345889999999999999999999999999999999875 79999999999999983 45555 56999999
Q ss_pred EeecCCCC
Q 024012 260 DVAKTTPK 267 (274)
Q Consensus 260 ~~a~~~~~ 267 (274)
.+|.++..
T Consensus 79 ~~a~~k~~ 86 (89)
T 3d2w_A 79 SNAEPKHN 86 (89)
T ss_dssp EECC----
T ss_pred EEcCCCCc
Confidence 99998654
No 176
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.76 E-value=3.4e-18 Score=135.11 Aligned_cols=81 Identities=30% Similarity=0.513 Sum_probs=76.3
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEeEEEeecCC
Q 024012 186 KKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVDVAKTT 265 (274)
Q Consensus 186 ~~lfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~d~~~g~~rG~aFV~F~s~~~A~~Ai~~l~g~~l~G~~l~V~~a~~~ 265 (274)
++|||+|||+++|+++|+++|++||.|.++++++++ +++++|||||+|.+.++|.+|++.|+|..+.|+.|.|.++.+.
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~-~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~ 79 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDK-NNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQS 79 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCC-C-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECC-CCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCC
Confidence 589999999999999999999999999999999998 6889999999999999999999999999999999999999877
Q ss_pred CC
Q 024012 266 PK 267 (274)
Q Consensus 266 ~~ 267 (274)
..
T Consensus 80 ~~ 81 (166)
T 3md3_A 80 QQ 81 (166)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 177
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.76 E-value=5.2e-18 Score=124.65 Aligned_cols=83 Identities=17% Similarity=0.204 Sum_probs=74.2
Q ss_pred ccccEEEEcCCCC-----CCCHHHHHHHHhccCCeEEEEEEecCCC-CCcceEEEEEeCCHHHHHHHHHHhCCceeCCEE
Q 024012 183 IKTKKLFVTGLSF-----YTSEKTLRAAFEGFGELVEVKIIMDKIS-KRSKGYAFIEYTTEEAASAALKEMNGKIINGWM 256 (274)
Q Consensus 183 ~~~~~lfV~nLp~-----~~te~~L~~~F~~fG~i~~v~i~~d~~~-g~~rG~aFV~F~s~~~A~~Ai~~l~g~~l~G~~ 256 (274)
.++++|+|.||.. +-++++|+++|++||.|.++.|++++.+ +.++|||||+|.+.++|.+|++.|||+.++||.
T Consensus 6 ~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr~ 85 (105)
T 2pe8_A 6 CPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRV 85 (105)
T ss_dssp SCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCcE
Confidence 3578999999963 2378999999999999999999998754 689999999999999999999999999999999
Q ss_pred eEEEeecCC
Q 024012 257 IVVDVAKTT 265 (274)
Q Consensus 257 l~V~~a~~~ 265 (274)
|.|.++.+.
T Consensus 86 i~v~~a~~~ 94 (105)
T 2pe8_A 86 VKACFYNLD 94 (105)
T ss_dssp CEEEECCHH
T ss_pred EEEEEcCHH
Confidence 999999764
No 178
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.76 E-value=9.6e-19 Score=130.90 Aligned_cols=77 Identities=18% Similarity=0.300 Sum_probs=67.8
Q ss_pred ccccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEE-----e
Q 024012 183 IKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWM-----I 257 (274)
Q Consensus 183 ~~~~~lfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~d~~~g~~rG~aFV~F~s~~~A~~Ai~~l~g~~l~G~~-----l 257 (274)
....+|||+|||+++++++|+++|++||.|.++.|+.+ |||||+|.+.++|++||+.|||..|+|++ |
T Consensus 14 r~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i 86 (115)
T 3beg_B 14 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYI 86 (115)
T ss_dssp ---CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT-------SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC-------CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEE
Confidence 34789999999999999999999999999999999865 79999999999999999999999999988 8
Q ss_pred EEEeecCCC
Q 024012 258 VVDVAKTTP 266 (274)
Q Consensus 258 ~V~~a~~~~ 266 (274)
+|..+.+..
T Consensus 87 ~v~~~~~~~ 95 (115)
T 3beg_B 87 RVKVDGPRS 95 (115)
T ss_dssp EEEECC---
T ss_pred EeccCCCCC
Confidence 888887754
No 179
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.76 E-value=6.4e-19 Score=133.51 Aligned_cols=80 Identities=23% Similarity=0.329 Sum_probs=73.3
Q ss_pred ccccEEEEcCCCCCCCHHHHHHHHhccCCeE--EEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEeEEE
Q 024012 183 IKTKKLFVTGLSFYTSEKTLRAAFEGFGELV--EVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVD 260 (274)
Q Consensus 183 ~~~~~lfV~nLp~~~te~~L~~~F~~fG~i~--~v~i~~d~~~g~~rG~aFV~F~s~~~A~~Ai~~l~g~~l~G~~l~V~ 260 (274)
....+|||+|||+++|+++|+++|++| .|+ +|+|++|+. |+++|||||+|.+.++|++||+ +++..|+||.|.|.
T Consensus 40 ~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~-GrsrGfaFV~F~~~e~A~~Al~-~~~~~l~gR~I~V~ 116 (126)
T 2hgm_A 40 ANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPE-GKITGEAFVQFASQELAEKALG-KHKERIGHRYIEVF 116 (126)
T ss_dssp SSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSS-SSSCSEEEEEESSTTHHHHHHT-TTTCCBTTBCCCCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCC-CCCceEEEEEECCHHHHHHHHH-HCCCEECCEEEEEE
Confidence 457889999999999999999999999 677 999999985 9999999999999999999996 58899999999999
Q ss_pred eecCC
Q 024012 261 VAKTT 265 (274)
Q Consensus 261 ~a~~~ 265 (274)
.+.++
T Consensus 117 ~a~~~ 121 (126)
T 2hgm_A 117 KSSQE 121 (126)
T ss_dssp EECHH
T ss_pred ECCHH
Confidence 98654
No 180
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=1.1e-18 Score=124.15 Aligned_cols=82 Identities=22% Similarity=0.368 Sum_probs=70.4
Q ss_pred cccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEeEEEeec
Q 024012 184 KTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVDVAK 263 (274)
Q Consensus 184 ~~~~lfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~d~~~g~~rG~aFV~F~s~~~A~~Ai~~l~g~~l~G~~l~V~~a~ 263 (274)
..++|||+|||+++++++|+++|++||.|.+++|+.+ ++|||||+|.+.++|++|+.. +..+.|++|+|.+++
T Consensus 4 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~~~~~--~~~~~g~~l~v~~a~ 76 (88)
T 1wf0_A 4 GSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP-----FRAFAFVTFADDQIAQSLCGE--DLIIKGISVHISNAE 76 (88)
T ss_dssp CCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS-----CCSCCEEECSCHHHHHHTTTC--EEEETTEEEEEECCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC-----CCCEEEEEECCHHHHHHHhcC--CceeCCEEEEEEecC
Confidence 4789999999999999999999999999999999865 689999999999999865321 345689999999999
Q ss_pred CCCCCCCCC
Q 024012 264 TTPKYSRGR 272 (274)
Q Consensus 264 ~~~~~~~~r 272 (274)
++....+++
T Consensus 77 ~~~~~~~~~ 85 (88)
T 1wf0_A 77 PKHNSNSGP 85 (88)
T ss_dssp CCCCCCSCS
T ss_pred CCCCCCCCC
Confidence 987665544
No 181
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.74 E-value=2.2e-17 Score=124.55 Aligned_cols=76 Identities=18% Similarity=0.266 Sum_probs=68.8
Q ss_pred ccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCcceE-EEEEeCCHHHHHHHHHHhCCceeCC--EEeEEEe
Q 024012 185 TKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGY-AFIEYTTEEAASAALKEMNGKIING--WMIVVDV 261 (274)
Q Consensus 185 ~~~lfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~d~~~g~~rG~-aFV~F~s~~~A~~Ai~~l~g~~l~G--~~l~V~~ 261 (274)
...|||+|||+.+|+++|+++|++||.|.+|.|.. + .|| |||+|.+.++|.+|++.|||..|.| +.|+|+|
T Consensus 25 vl~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~-~-----~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~ 98 (124)
T 2e5i_A 25 VLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFK-R-----NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEY 98 (124)
T ss_dssp EEEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEE-S-----SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEEC
T ss_pred EEEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEe-C-----CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEE
Confidence 44578999999999999999999999999999864 2 276 9999999999999999999999987 6999999
Q ss_pred ecCCC
Q 024012 262 AKTTP 266 (274)
Q Consensus 262 a~~~~ 266 (274)
|+++.
T Consensus 99 Ak~~~ 103 (124)
T 2e5i_A 99 ARPTR 103 (124)
T ss_dssp CSCSC
T ss_pred ecCCc
Confidence 99874
No 182
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.74 E-value=4.5e-18 Score=128.36 Aligned_cols=80 Identities=28% Similarity=0.504 Sum_probs=71.6
Q ss_pred ccccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEeEEEee
Q 024012 183 IKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVDVA 262 (274)
Q Consensus 183 ~~~~~lfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~d~~~g~~rG~aFV~F~s~~~A~~Ai~~l~g~~l~G~~l~V~~a 262 (274)
...++|||+|+ ++|+++|+++|++||.|.+|.+. .++|||||+|.+.++|.+|+..|||..+.|++|+|.||
T Consensus 37 ~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~------~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a 108 (121)
T 2bz2_A 37 RKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIA 108 (121)
T ss_dssp CCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEEC
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe------CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEe
Confidence 45789999996 69999999999999999999885 46899999999999999999999999999999999999
Q ss_pred cCCCCCCC
Q 024012 263 KTTPKYSR 270 (274)
Q Consensus 263 ~~~~~~~~ 270 (274)
++++...+
T Consensus 109 ~~~~~~~~ 116 (121)
T 2bz2_A 109 RKQPMLDA 116 (121)
T ss_dssp CSSCC---
T ss_pred CCCCCCCC
Confidence 98875443
No 183
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.74 E-value=7.9e-19 Score=131.36 Aligned_cols=109 Identities=11% Similarity=0.189 Sum_probs=57.4
Q ss_pred CCceeeeecCCCcceeEEecCCCCCCCCHHHHHHHHHHHHHhhhCCcccceEEEecCCCCCCeEEeeeCCHHHHHHHH-C
Q 024012 63 IGTTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIYHVSWQSNFGFCCELDDECAQELT-G 141 (274)
Q Consensus 63 ~~s~~lf~vgnl~~~~~~~~~p~~~~~t~~~L~~~F~~~l~~~~G~v~~v~i~~~~~g~srgfgFV~f~~~e~a~~a~-~ 141 (274)
.++++|| |||||+ ++|+++|+++|.++ |.|.+|+|+.+. +.+||||||+|.+.++|++|+ .
T Consensus 3 ~~~~~lf-V~nLp~-----------~~te~~L~~~F~~~-----G~v~~v~i~~d~-~~~kg~afV~f~~~~~A~~Ai~~ 64 (115)
T 4f25_A 3 LGSGNIF-IKNLDK-----------SIDNKALYDTFSAF-----GNILSCKVVCDE-NGSKGYGFVHFETQEAAERAIEK 64 (115)
T ss_dssp --CCEEE-EESCCT-----------TCCHHHHHHHHGGG-----SCEEEEEEEEET-TEEEEEEEEEESCHHHHHHHHHH
T ss_pred CCCCEEE-ECCCCC-----------CCCHHHHHHHHhcc-----CCEEEEEEeecC-CCCCceEEEEECCHHHHHHHHHH
Confidence 3567899 999999 69999999999977 999999998764 558999999999999997776 5
Q ss_pred CCCceee-cCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccEEEEcCCCCCCCHHH
Q 024012 142 VPGVLSV-QPDENFGSENKDYGGNNLQNSMVPSDSSEASPTQIKTKKLFVTGLSFYTSEKT 201 (274)
Q Consensus 142 ~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~te~~ 201 (274)
|+|.... ++........+ ...............+|||+|||+++|++.
T Consensus 65 l~~~~~~g~~i~V~~a~~~------------~~~~~~~~~~~~~~~~lyv~Nl~~~~T~~a 113 (115)
T 4f25_A 65 MNGMLLNDRKVFVGRFKSR------------KEREAELGARAKEFTNVYIKNFGPGSTRAA 113 (115)
T ss_dssp HTTCEETTEECEEEESSCC------------CC----------------------------
T ss_pred cCCCEECCEEEEEEECCCc------------cccccccccccCCCCceEeCCCCCCccccc
Confidence 6775321 11110000000 000111122233456899999999999864
No 184
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.73 E-value=3.6e-18 Score=127.52 Aligned_cols=77 Identities=29% Similarity=0.395 Sum_probs=66.4
Q ss_pred cccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCC---CCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEeEEE
Q 024012 184 KTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKIS---KRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVD 260 (274)
Q Consensus 184 ~~~~lfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~d~~~---g~~rG~aFV~F~s~~~A~~Ai~~l~g~~l~G~~l~V~ 260 (274)
..++|||+|||+++|+++|+++|++||.|. +.++.++.+ |+++|||||+|.+.++|++||+.|+ .++|+.+.+.
T Consensus 7 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~--~~~G~~~~~~ 83 (114)
T 2dnl_A 7 GSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACL--EEDGKLYLCV 83 (114)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSE--EETTEEEEEE
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhh--hcCCcEEEec
Confidence 478899999999999999999999999999 888888777 7999999999999999999999983 3555555555
Q ss_pred eec
Q 024012 261 VAK 263 (274)
Q Consensus 261 ~a~ 263 (274)
.+.
T Consensus 84 ~~~ 86 (114)
T 2dnl_A 84 SSP 86 (114)
T ss_dssp CCS
T ss_pred cCC
Confidence 433
No 185
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.73 E-value=1.2e-17 Score=137.47 Aligned_cols=77 Identities=23% Similarity=0.305 Sum_probs=72.3
Q ss_pred cccEEEEcCCC-CCCCHHHHHHHHhccCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEeEEEee
Q 024012 184 KTKKLFVTGLS-FYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVDVA 262 (274)
Q Consensus 184 ~~~~lfV~nLp-~~~te~~L~~~F~~fG~i~~v~i~~d~~~g~~rG~aFV~F~s~~~A~~Ai~~l~g~~l~G~~l~V~~a 262 (274)
++++|||+||| +.+++++|+++|++||.|.+|+|+++ ++|||||+|.+.++|++|++.|||..+.|++|+|.+|
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~-----~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s 77 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKS-----KPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVS 77 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTT-----STTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecC-----CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEc
Confidence 47899999999 89999999999999999999999875 3799999999999999999999999999999999999
Q ss_pred cCC
Q 024012 263 KTT 265 (274)
Q Consensus 263 ~~~ 265 (274)
+.+
T Consensus 78 ~~~ 80 (205)
T 3tyt_A 78 KQP 80 (205)
T ss_dssp SCS
T ss_pred cCC
Confidence 754
No 186
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.72 E-value=2.4e-17 Score=116.76 Aligned_cols=72 Identities=24% Similarity=0.496 Sum_probs=67.1
Q ss_pred ccccEEEEcCCCCCCCHHHHHHHHhcc----C-------CeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCce
Q 024012 183 IKTKKLFVTGLSFYTSEKTLRAAFEGF----G-------ELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKI 251 (274)
Q Consensus 183 ~~~~~lfV~nLp~~~te~~L~~~F~~f----G-------~i~~v~i~~d~~~g~~rG~aFV~F~s~~~A~~Ai~~l~g~~ 251 (274)
.+.++|||+|||+++++++|+++|++| | .|.++.+.++ +|||||+|.+.++|.+|+ .|||..
T Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~------kg~afV~f~~~~~a~~A~-~l~g~~ 76 (87)
T 2hzc_A 4 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD------KNFAFLEFRSVDETTQAM-AFDGII 76 (87)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS------SSEEEEEESSHHHHHHHG-GGTTCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC------CcEEEEEcCCHHHHHHHH-hcCCCE
Confidence 457899999999999999999999999 8 9999998754 789999999999999999 999999
Q ss_pred eCCEEeEEEe
Q 024012 252 INGWMIVVDV 261 (274)
Q Consensus 252 l~G~~l~V~~ 261 (274)
++|+.|+|+.
T Consensus 77 ~~g~~l~V~r 86 (87)
T 2hzc_A 77 FQGQSLKIRR 86 (87)
T ss_dssp ETTEECEEEC
T ss_pred ECCeEEEEeC
Confidence 9999999973
No 187
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.72 E-value=1.1e-17 Score=138.02 Aligned_cols=83 Identities=30% Similarity=0.542 Sum_probs=76.1
Q ss_pred cccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEeEEEeec
Q 024012 184 KTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVDVAK 263 (274)
Q Consensus 184 ~~~~lfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~d~~~g~~rG~aFV~F~s~~~A~~Ai~~l~g~~l~G~~l~V~~a~ 263 (274)
..++|||+|||.++|+++|+++|++||.|.++++++++.+|.++|||||+|.+.++|.+|++.|||..+.|+.|.|.++.
T Consensus 27 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~~ 106 (216)
T 2qfj_A 27 IMSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPS 106 (216)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECCS
T ss_pred cCCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecCC
Confidence 46899999999999999999999999999999999999899999999999999999999999999999999999999887
Q ss_pred CCC
Q 024012 264 TTP 266 (274)
Q Consensus 264 ~~~ 266 (274)
...
T Consensus 107 ~~~ 109 (216)
T 2qfj_A 107 NIG 109 (216)
T ss_dssp CCG
T ss_pred Ccc
Confidence 654
No 188
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.72 E-value=3e-17 Score=133.79 Aligned_cols=80 Identities=14% Similarity=0.264 Sum_probs=73.9
Q ss_pred cccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEeEEEeec
Q 024012 184 KTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVDVAK 263 (274)
Q Consensus 184 ~~~~lfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~d~~~g~~rG~aFV~F~s~~~A~~Ai~~l~g~~l~G~~l~V~~a~ 263 (274)
..++|||+|||+.+|+++|+++|++||.|.+|+|+++. +|.++|||||+|.+.++|.+|+..+ +..++|++|.|.+++
T Consensus 108 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~-~~~~kG~aFVeF~~~e~A~~A~~~~-~~~~~Gr~l~V~~~~ 185 (193)
T 2voo_A 108 KNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTL-HKAFKGSIFVVFDSIESAKKFVETP-GQKYKETDLLILFKD 185 (193)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECT-TCCEEEEEEEEESSHHHHHHHHHCT-TCEETTEECEEEETT
T ss_pred ccCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHhC-CCeECCEEEEEEEhH
Confidence 46899999999999999999999999999999999987 6999999999999999999999665 569999999999987
Q ss_pred CC
Q 024012 264 TT 265 (274)
Q Consensus 264 ~~ 265 (274)
.-
T Consensus 186 ~y 187 (193)
T 2voo_A 186 DY 187 (193)
T ss_dssp TC
T ss_pred HH
Confidence 53
No 189
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=1.3e-16 Score=118.63 Aligned_cols=86 Identities=16% Similarity=0.356 Sum_probs=73.3
Q ss_pred CCccccEEEEcCCCCCCC-----------HHHHHHHHhccCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCC
Q 024012 181 TQIKTKKLFVTGLSFYTS-----------EKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNG 249 (274)
Q Consensus 181 ~~~~~~~lfV~nLp~~~t-----------e~~L~~~F~~fG~i~~v~i~~d~~~g~~rG~aFV~F~s~~~A~~Ai~~l~g 249 (274)
...++++|+|.||..... +++|+++|++||.|.+|.| .++ .++|||||+|.+.++|.+|+..|||
T Consensus 11 ~~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~~---~~~G~afV~f~~~~~A~~Ai~~lng 86 (112)
T 2dit_A 11 RMRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FDR---HPDGVASVSFRDPEEADYCIQTLDG 86 (112)
T ss_dssp CCCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ETT---CTTCEEEEECSCHHHHHHHHHHSTT
T ss_pred CCCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ecC---CCCEEEEEEECCHHHHHHHHHHcCC
Confidence 344688999999944332 6899999999999999966 554 4899999999999999999999999
Q ss_pred ceeCCEEeEEEeecCCCCCCC
Q 024012 250 KIINGWMIVVDVAKTTPKYSR 270 (274)
Q Consensus 250 ~~l~G~~l~V~~a~~~~~~~~ 270 (274)
..++|++|+|.|+.++.+...
T Consensus 87 ~~~~gr~l~v~~a~~~~~~~~ 107 (112)
T 2dit_A 87 RWFGGRQITAQAWDGTTDYQS 107 (112)
T ss_dssp CEETTEECEEEECCSCCCSSC
T ss_pred CEECCcEEEEEEeCCCCCccc
Confidence 999999999999998765443
No 190
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.71 E-value=3.7e-17 Score=130.30 Aligned_cols=84 Identities=27% Similarity=0.408 Sum_probs=77.2
Q ss_pred cccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCC--CcceEEEEEeCCHHHHHHHHHHhCCceeC---CEEeE
Q 024012 184 KTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISK--RSKGYAFIEYTTEEAASAALKEMNGKIIN---GWMIV 258 (274)
Q Consensus 184 ~~~~lfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~d~~~g--~~rG~aFV~F~s~~~A~~Ai~~l~g~~l~---G~~l~ 258 (274)
..++|||+|||+++|+++|+++|++||.|.++++++++.+| .++|||||+|.+.++|.+|++.|+|..+. ++.+.
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~ 81 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQ 81 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceE
Confidence 36799999999999999999999999999999999999776 89999999999999999999999998876 68889
Q ss_pred EEeecCCCC
Q 024012 259 VDVAKTTPK 267 (274)
Q Consensus 259 V~~a~~~~~ 267 (274)
+.++.+...
T Consensus 82 ~~~~~~~~~ 90 (175)
T 3nmr_A 82 MKPADSEKN 90 (175)
T ss_dssp EEECGGGCC
T ss_pred Ecccccccc
Confidence 998887653
No 191
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.71 E-value=2.2e-17 Score=130.80 Aligned_cols=80 Identities=28% Similarity=0.550 Sum_probs=75.2
Q ss_pred cccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEeEEEeec
Q 024012 184 KTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVDVAK 263 (274)
Q Consensus 184 ~~~~lfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~d~~~g~~rG~aFV~F~s~~~A~~Ai~~l~g~~l~G~~l~V~~a~ 263 (274)
+.++|||+|||+++|+++|+++|++||.|.++++++++.+|.++|||||+|.+.++|.+|++. +..++|+.|.|.++.
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~--~~~~~g~~i~v~~~~ 79 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT--QHILDGKVIDPKRAI 79 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHS--CCEETTEECCCEECC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhc--ccccCCeEccccccc
Confidence 478999999999999999999999999999999999998999999999999999999999974 679999999999987
Q ss_pred CC
Q 024012 264 TT 265 (274)
Q Consensus 264 ~~ 265 (274)
++
T Consensus 80 ~~ 81 (167)
T 2cjk_A 80 PR 81 (167)
T ss_dssp CH
T ss_pred ch
Confidence 64
No 192
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.70 E-value=2.6e-17 Score=137.63 Aligned_cols=80 Identities=24% Similarity=0.420 Sum_probs=71.6
Q ss_pred CccccEEEEcCCCCCC---------CHHHHHHHHhccCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcee
Q 024012 182 QIKTKKLFVTGLSFYT---------SEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKII 252 (274)
Q Consensus 182 ~~~~~~lfV~nLp~~~---------te~~L~~~F~~fG~i~~v~i~~d~~~g~~rG~aFV~F~s~~~A~~Ai~~l~g~~l 252 (274)
....++|||+|||..+ +|++|+++|++||+|++|+|+. +||||||+|.+.++|+.|+++|+|..|
T Consensus 131 ~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~------~kG~AFV~F~~~~~Ae~A~~am~g~~l 204 (240)
T 3u1l_A 131 RKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVE------SKNCGFVKFKYQANAEFAKEAMSNQTL 204 (240)
T ss_dssp CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEG------GGTEEEEEESSHHHHHHHHHHHTTCCC
T ss_pred ccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEEC------CCCEEEEEeCCHHHHHHHHHHhCCCEE
Confidence 4568999999999998 7999999999999999999985 489999999999999999999999999
Q ss_pred ------------CCEEeEEEeecCCCC
Q 024012 253 ------------NGWMIVVDVAKTTPK 267 (274)
Q Consensus 253 ------------~G~~l~V~~a~~~~~ 267 (274)
.|+.|.|.||+..+.
T Consensus 205 ~~~~~~e~~~~~~gr~L~V~wA~~~pn 231 (240)
T 3u1l_A 205 LLPSDKEWDDRREGTGLLVKWANEDPD 231 (240)
T ss_dssp CCTTSTTGGGGGGSCCCEEEECC----
T ss_pred eccccccccccCCCCEEEEEEccCCCC
Confidence 899999999998764
No 193
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.70 E-value=9.6e-17 Score=138.13 Aligned_cols=83 Identities=22% Similarity=0.384 Sum_probs=76.7
Q ss_pred CCccccEEEEcCCCCCCCHHHHH----HHHhccCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEE
Q 024012 181 TQIKTKKLFVTGLSFYTSEKTLR----AAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWM 256 (274)
Q Consensus 181 ~~~~~~~lfV~nLp~~~te~~L~----~~F~~fG~i~~v~i~~d~~~g~~rG~aFV~F~s~~~A~~Ai~~l~g~~l~G~~ 256 (274)
...+.++|||+|||+++|+++|+ ++|++||.|.+|++.+ +|+++|||||+|.+.++|.+|++.|||..+.|+.
T Consensus 5 ~~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 81 (282)
T 3pgw_A 5 ETRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKP 81 (282)
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcC---CCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcE
Confidence 34568999999999999999977 8999999999999885 6789999999999999999999999999999999
Q ss_pred eEEEeecCCC
Q 024012 257 IVVDVAKTTP 266 (274)
Q Consensus 257 l~V~~a~~~~ 266 (274)
|+|.|++.+.
T Consensus 82 l~v~~a~~~~ 91 (282)
T 3pgw_A 82 MRIQYAKTDS 91 (282)
T ss_pred EEEEEeccCc
Confidence 9999998765
No 194
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.68 E-value=1.5e-16 Score=116.90 Aligned_cols=82 Identities=15% Similarity=0.208 Sum_probs=72.4
Q ss_pred cccEEEEcCC--CCCCC--------HHHHHHHHhccCCeEEEEEEecCCC--CCcceEEEEEeCCHHHHHHHHHHhCCce
Q 024012 184 KTKKLFVTGL--SFYTS--------EKTLRAAFEGFGELVEVKIIMDKIS--KRSKGYAFIEYTTEEAASAALKEMNGKI 251 (274)
Q Consensus 184 ~~~~lfV~nL--p~~~t--------e~~L~~~F~~fG~i~~v~i~~d~~~--g~~rG~aFV~F~s~~~A~~Ai~~l~g~~ 251 (274)
+++.|.+.|+ |..+. +++|++.|++||.|++|.|++++.+ +.++|+|||+|.+.++|.+|++.|||+.
T Consensus 4 ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~~ 83 (105)
T 3v4m_A 4 PTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRK 83 (105)
T ss_dssp CCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTCE
T ss_pred CCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCCE
Confidence 5788999998 44443 3789999999999999999998754 4689999999999999999999999999
Q ss_pred eCCEEeEEEeecCC
Q 024012 252 INGWMIVVDVAKTT 265 (274)
Q Consensus 252 l~G~~l~V~~a~~~ 265 (274)
++||.|+|+|+...
T Consensus 84 f~GR~i~v~~~~~~ 97 (105)
T 3v4m_A 84 FANRVVVTKYCDPD 97 (105)
T ss_dssp ETTEECEEEEECHH
T ss_pred eCCCEEEEEEeCHH
Confidence 99999999998754
No 195
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.67 E-value=3.6e-17 Score=119.99 Aligned_cols=72 Identities=22% Similarity=0.431 Sum_probs=65.7
Q ss_pred EcCCCCCCCHHHHHHHH------------hccCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEe
Q 024012 190 VTGLSFYTSEKTLRAAF------------EGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMI 257 (274)
Q Consensus 190 V~nLp~~~te~~L~~~F------------~~fG~i~~v~i~~d~~~g~~rG~aFV~F~s~~~A~~Ai~~l~g~~l~G~~l 257 (274)
+.|||..+++++|+++| ++||.|.+|.|+++. +++++|||||+|.+.++|.+|++.|||+.++||+|
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~-~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i 98 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNL-GDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPI 98 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSS-SSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEEC
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCC-CCCccEEEEEEECCHHHHHHHHHHHCCCEECCEEE
Confidence 56788888888887777 999999999999987 58899999999999999999999999999999999
Q ss_pred EEEee
Q 024012 258 VVDVA 262 (274)
Q Consensus 258 ~V~~a 262 (274)
+|+|+
T Consensus 99 ~v~~s 103 (104)
T 1jmt_A 99 HAELS 103 (104)
T ss_dssp CEEEC
T ss_pred EEEEc
Confidence 99986
No 196
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.66 E-value=2.8e-17 Score=131.38 Aligned_cols=85 Identities=18% Similarity=0.270 Sum_probs=75.0
Q ss_pred CCccccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEeEEE
Q 024012 181 TQIKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVD 260 (274)
Q Consensus 181 ~~~~~~~lfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~d~~~g~~rG~aFV~F~s~~~A~~Ai~~l~g~~l~G~~l~V~ 260 (274)
.....++|||+|||+++|+++|+++|++||.+.. .++.+..+|.++|||||+|.+.++|.+|+ +|||..+.|++|+|.
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~-~~~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~v~ 86 (175)
T 1fje_B 9 ESTTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKAL-ELTGLKVFGNEIKLE 86 (175)
T ss_dssp SCSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHH-HGGGEEETTEEEEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEEECCCCccccEEEEEECCHHHHHHHH-hcCCCEeCCeEEEEe
Confidence 3455899999999999999999999999998776 34455558899999999999999999999 699999999999999
Q ss_pred eecCCCC
Q 024012 261 VAKTTPK 267 (274)
Q Consensus 261 ~a~~~~~ 267 (274)
++.++..
T Consensus 87 ~~~~~~~ 93 (175)
T 1fje_B 87 KPKGRDS 93 (175)
T ss_dssp CCCCSSC
T ss_pred cCCCccc
Confidence 9987653
No 197
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.66 E-value=2.4e-16 Score=131.77 Aligned_cols=79 Identities=24% Similarity=0.392 Sum_probs=74.3
Q ss_pred CccccEEEEcCCCC-CCCHHHHHHHHhccCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEeEEE
Q 024012 182 QIKTKKLFVTGLSF-YTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVD 260 (274)
Q Consensus 182 ~~~~~~lfV~nLp~-~~te~~L~~~F~~fG~i~~v~i~~d~~~g~~rG~aFV~F~s~~~A~~Ai~~l~g~~l~G~~l~V~ 260 (274)
..++++|||+|||+ .+++++|+++|++||.|.+|++++++ +|||||+|.+.++|++|++.|||..+.|++|.|.
T Consensus 31 ~~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~-----~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v~ 105 (229)
T 2adc_A 31 GAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRIT 105 (229)
T ss_dssp CCCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT-----SCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEEE
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEE
Confidence 34588999999999 99999999999999999999999875 7899999999999999999999999999999999
Q ss_pred eecCC
Q 024012 261 VAKTT 265 (274)
Q Consensus 261 ~a~~~ 265 (274)
+++++
T Consensus 106 ~a~~~ 110 (229)
T 2adc_A 106 LSKHQ 110 (229)
T ss_dssp CCSCC
T ss_pred EecCc
Confidence 99865
No 198
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.65 E-value=6.3e-16 Score=115.74 Aligned_cols=81 Identities=17% Similarity=0.281 Sum_probs=72.0
Q ss_pred cccEEEEcCCC--CCC---CHHHHHHHHhccCCeEEEEEEecCC----CCCcceEEEEEeCCHHHHHHHHHHhCCceeCC
Q 024012 184 KTKKLFVTGLS--FYT---SEKTLRAAFEGFGELVEVKIIMDKI----SKRSKGYAFIEYTTEEAASAALKEMNGKIING 254 (274)
Q Consensus 184 ~~~~lfV~nLp--~~~---te~~L~~~F~~fG~i~~v~i~~d~~----~g~~rG~aFV~F~s~~~A~~Ai~~l~g~~l~G 254 (274)
++++|++.|+- .++ -+++|++.|++||.|.+|.|++++. ++.++|+|||+|.+.++|.+|++.|||+.++|
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~G 98 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAG 98 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 58899999983 222 3689999999999999999999864 46788999999999999999999999999999
Q ss_pred EEeEEEeecC
Q 024012 255 WMIVVDVAKT 264 (274)
Q Consensus 255 ~~l~V~~a~~ 264 (274)
|.|+|.|+..
T Consensus 99 R~i~v~~~~~ 108 (118)
T 3ue2_A 99 RKVVAEVYDQ 108 (118)
T ss_dssp EECEEEEECH
T ss_pred cEEEEEEcCh
Confidence 9999999865
No 199
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.63 E-value=3.4e-16 Score=127.68 Aligned_cols=76 Identities=25% Similarity=0.420 Sum_probs=72.4
Q ss_pred ccEEEEcCCCC-CCCHHHHHHHHhccCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEeEEEeec
Q 024012 185 TKKLFVTGLSF-YTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVDVAK 263 (274)
Q Consensus 185 ~~~lfV~nLp~-~~te~~L~~~F~~fG~i~~v~i~~d~~~g~~rG~aFV~F~s~~~A~~Ai~~l~g~~l~G~~l~V~~a~ 263 (274)
+++|||+|||+ .+++++|+++|++||.|.++++++++ +|||||+|.+.++|.+|+..|||..+.|++|+|.+++
T Consensus 3 ~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~-----~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~ 77 (198)
T 1qm9_A 3 NSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSK 77 (198)
T ss_dssp CCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC-----SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEECC
T ss_pred CcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEec
Confidence 68999999999 99999999999999999999999875 7899999999999999999999999999999999998
Q ss_pred CC
Q 024012 264 TT 265 (274)
Q Consensus 264 ~~ 265 (274)
++
T Consensus 78 ~~ 79 (198)
T 1qm9_A 78 HQ 79 (198)
T ss_dssp CC
T ss_pred CC
Confidence 75
No 200
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.62 E-value=1.9e-15 Score=128.85 Aligned_cols=78 Identities=27% Similarity=0.422 Sum_probs=72.3
Q ss_pred CccccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEeEEEe
Q 024012 182 QIKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVDV 261 (274)
Q Consensus 182 ~~~~~~lfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~d~~~g~~rG~aFV~F~s~~~A~~Ai~~l~g~~l~G~~l~V~~ 261 (274)
....++|||+|||+++|+++|+++|++||.|.+|.+.+ ++|||||+|.+.++|.+|+..|||..+.|+.|.|.+
T Consensus 19 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~------~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~ 92 (261)
T 3sde_A 19 YTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINR------DRGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRF 92 (261)
T ss_dssp SCGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEET------TTTEEEEECSSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeC------CCcEEEEEECCHHHHHHHHHHcCCcEECCceeEeee
Confidence 34578999999999999999999999999999999864 378999999999999999999999999999999999
Q ss_pred ecCC
Q 024012 262 AKTT 265 (274)
Q Consensus 262 a~~~ 265 (274)
+.+.
T Consensus 93 a~~~ 96 (261)
T 3sde_A 93 ATHG 96 (261)
T ss_dssp CCCS
T ss_pred cccC
Confidence 9764
No 201
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.60 E-value=8.3e-15 Score=106.32 Aligned_cols=77 Identities=21% Similarity=0.246 Sum_probs=64.7
Q ss_pred ccEEEEcCCC-------CCCCHHHHHHHHhccCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEe
Q 024012 185 TKKLFVTGLS-------FYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMI 257 (274)
Q Consensus 185 ~~~lfV~nLp-------~~~te~~L~~~F~~fG~i~~v~i~~d~~~g~~rG~aFV~F~s~~~A~~Ai~~l~g~~l~G~~l 257 (274)
.++|-|.-.. ..+++++|+++|++||.|.+|.|+ ++++|||||+|.+.++|.+|++.+++ +.|++|
T Consensus 10 ~~~~~v~w~~~~~~~~~~~~te~~L~~~F~~~G~V~~v~i~-----~~~rGfaFVeF~~~~~A~~Ai~~~~~--~~g~~l 82 (100)
T 2d9o_A 10 TPKLKLKWKCKKEDESKGGYSKDVLLRLLQKYGEVLNLVLS-----SKKPGTAVVEFATVKAAELAVQNEVG--LVDNPL 82 (100)
T ss_dssp SCEEEEECCCCSSCSCCCSCCHHHHHHHHHTTSCEEEEEEE-----SSSSSEEEEEESCHHHHHHHHHTCCB--CSSSBC
T ss_pred cceEEEeeeccCccCcCCCCCHHHHHHHHHhcCCEEEEEEc-----cCCCCEEEEEECCHHHHHHHHHhcCC--CCCCeE
Confidence 4455555433 568999999999999999999987 36899999999999999999988655 679999
Q ss_pred EEEeecCCCCC
Q 024012 258 VVDVAKTTPKY 268 (274)
Q Consensus 258 ~V~~a~~~~~~ 268 (274)
+|+|+++++..
T Consensus 83 ~V~~a~~~~~~ 93 (100)
T 2d9o_A 83 KISWLEGQPQD 93 (100)
T ss_dssp EEECSSCCCCC
T ss_pred EEEEccCCCCC
Confidence 99999987643
No 202
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.59 E-value=6e-15 Score=117.19 Aligned_cols=77 Identities=21% Similarity=0.468 Sum_probs=69.3
Q ss_pred cccEEEEcCCCCCCCHHHHHHHHhcc----C-------CeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcee
Q 024012 184 KTKKLFVTGLSFYTSEKTLRAAFEGF----G-------ELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKII 252 (274)
Q Consensus 184 ~~~~lfV~nLp~~~te~~L~~~F~~f----G-------~i~~v~i~~d~~~g~~rG~aFV~F~s~~~A~~Ai~~l~g~~l 252 (274)
+.++|||+|||+++|+++|+++|++| | .|.++.+. .++|||||+|.+.++|.+|+ .|||..+
T Consensus 3 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~------~~~g~afV~f~~~~~A~~A~-~~~~~~~ 75 (172)
T 2g4b_A 3 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQIN------QDKNFAFLEFRSVDETTQAM-AFDGIIF 75 (172)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEE------TTTTEEEEEESSHHHHHHHG-GGTTCEE
T ss_pred cccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEec------CCCCEEEEEeCCHHHHHHHH-HhCCcEe
Confidence 47899999999999999999999999 6 77777765 34789999999999999999 9999999
Q ss_pred CCEEeEEEeecCCCC
Q 024012 253 NGWMIVVDVAKTTPK 267 (274)
Q Consensus 253 ~G~~l~V~~a~~~~~ 267 (274)
.|++|+|.++.+...
T Consensus 76 ~g~~i~v~~~~~~~~ 90 (172)
T 2g4b_A 76 QGQSLKIRRPHDYQP 90 (172)
T ss_dssp TTEECEEECCSSCCC
T ss_pred cCceeeecCCcccCC
Confidence 999999999886543
No 203
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.57 E-value=1.1e-14 Score=118.31 Aligned_cols=75 Identities=21% Similarity=0.493 Sum_probs=67.2
Q ss_pred cccEEEEcCCCCCCCHHHHHHHHhcc----C-------CeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcee
Q 024012 184 KTKKLFVTGLSFYTSEKTLRAAFEGF----G-------ELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKII 252 (274)
Q Consensus 184 ~~~~lfV~nLp~~~te~~L~~~F~~f----G-------~i~~v~i~~d~~~g~~rG~aFV~F~s~~~A~~Ai~~l~g~~l 252 (274)
..++|||+|||+++|+++|+++|++| | .|.++.+ +.++|||||+|.+.++|.+|+ .|||..+
T Consensus 3 ~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~------~~~~g~afV~F~~~~~A~~Al-~l~g~~~ 75 (198)
T 2yh0_A 3 MARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQI------NQDKNFAFLEFRSVDETTQAM-AFDGIIF 75 (198)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEE------ETTTTEEEEEESCSHHHHHHG-GGTTEEE
T ss_pred ceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEe------cCCCCEEEEEeCCHHHHHHHH-HhcCCEE
Confidence 37899999999999999999999999 5 5666655 356899999999999999999 9999999
Q ss_pred CCEEeEEEeecCC
Q 024012 253 NGWMIVVDVAKTT 265 (274)
Q Consensus 253 ~G~~l~V~~a~~~ 265 (274)
.|++|+|.++.+.
T Consensus 76 ~g~~i~v~~~~~~ 88 (198)
T 2yh0_A 76 QGQSLKIRRPHDY 88 (198)
T ss_dssp TTEEEEEECCCCC
T ss_pred cCceEEEeCCCCC
Confidence 9999999999875
No 204
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=7.1e-15 Score=107.49 Aligned_cols=66 Identities=14% Similarity=0.055 Sum_probs=59.9
Q ss_pred CCceeeeecCCCcceeEEecCCCCCCCCHHHHHHHHHHHHHhhhCCcccceEEEecCCCCCCeEEeeeCCHHHHHHHHCC
Q 024012 63 IGTTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIYHVSWQSNFGFCCELDDECAQELTGV 142 (274)
Q Consensus 63 ~~s~~lf~vgnl~~~~~~~~~p~~~~~t~~~L~~~F~~~l~~~~G~v~~v~i~~~~~g~srgfgFV~f~~~e~a~~a~~~ 142 (274)
...++|| |||||+ ++|+++|+++|+++ |.|.+|+|+.+..|.++|||||+|.+.++|++|+.+
T Consensus 9 ~~~~~lf-V~~Lp~-----------~~te~~L~~~F~~~-----G~v~~v~i~~d~~g~~rG~aFV~F~~~e~a~~Ai~~ 71 (103)
T 1s79_A 9 VKNRSVY-IKGFPT-----------DATLDDIKEWLEDK-----GQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVET 71 (103)
T ss_dssp SGGGCEE-EECCCT-----------TCCHHHHHHHHHTS-----SCEEEEEEECCCTTSCCCEEEEEESSHHHHHHHHTS
T ss_pred CCCCEEE-EECCCC-----------CCCHHHHHHHHhhc-----CCEEEEEEEECCCCCCccEEEEEECCHHHHHHHHHc
Confidence 4567899 999999 79999999999977 999999999877799999999999999999999987
Q ss_pred CCc
Q 024012 143 PGV 145 (274)
Q Consensus 143 ~g~ 145 (274)
+|.
T Consensus 72 ~~~ 74 (103)
T 1s79_A 72 PGQ 74 (103)
T ss_dssp SCC
T ss_pred CCC
Confidence 764
No 205
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.54 E-value=1.6e-14 Score=126.83 Aligned_cols=77 Identities=25% Similarity=0.331 Sum_probs=67.0
Q ss_pred CccccEEEEcC--CCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeC---CE-
Q 024012 182 QIKTKKLFVTG--LSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIIN---GW- 255 (274)
Q Consensus 182 ~~~~~~lfV~n--Lp~~~te~~L~~~F~~fG~i~~v~i~~d~~~g~~rG~aFV~F~s~~~A~~Ai~~l~g~~l~---G~- 255 (274)
..++.+|||+| |++.+||++|+++|++||+|.+|.+.. +||||||+|.+.++|++|++.|||..+. |+
T Consensus 15 ~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~------~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~ 88 (345)
T 3tht_A 15 SYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQK 88 (345)
T ss_dssp SSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT------TCSEEEEEESSHHHHHHHHHHTTTCEEECTTSCE
T ss_pred CCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCccccccCCc
Confidence 45688999999 578999999999999999999987753 4799999999999999999999999982 44
Q ss_pred -EeEEEeecC
Q 024012 256 -MIVVDVAKT 264 (274)
Q Consensus 256 -~l~V~~a~~ 264 (274)
.|.|.|+..
T Consensus 89 ~~ly~~~~~~ 98 (345)
T 3tht_A 89 ITLYLNFVEK 98 (345)
T ss_dssp EECEEEECSS
T ss_pred eEEEEEEeec
Confidence 688888853
No 206
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.53 E-value=4.2e-14 Score=105.10 Aligned_cols=78 Identities=14% Similarity=0.248 Sum_probs=66.9
Q ss_pred ccccEEEEcCCCCCC----------CHHHHHHHHhccCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcee
Q 024012 183 IKTKKLFVTGLSFYT----------SEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKII 252 (274)
Q Consensus 183 ~~~~~lfV~nLp~~~----------te~~L~~~F~~fG~i~~v~i~~d~~~g~~rG~aFV~F~s~~~A~~Ai~~l~g~~l 252 (274)
.+++.|.+.|+=..- -+++|++.|++||.|++|.|.++. ++|+|||+|.+.++|.+|++.|||+.+
T Consensus 5 ~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~----~~G~~fV~f~~~e~A~~Ai~~lnG~~f 80 (114)
T 3s6e_A 5 LATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNS----AQGNVYVKCPSIAAAIAAVNALHGRWF 80 (114)
T ss_dssp CCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTC----TTCCEEEECSSHHHHHHHHHHHTTCEE
T ss_pred CCCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCC----CcEEEEEEECCHHHHHHHHHHhCCCEE
Confidence 357789999983221 246899999999999999997653 589999999999999999999999999
Q ss_pred CCEEeEEEeecC
Q 024012 253 NGWMIVVDVAKT 264 (274)
Q Consensus 253 ~G~~l~V~~a~~ 264 (274)
+||.|+|.|+..
T Consensus 81 ~GR~i~v~~~~~ 92 (114)
T 3s6e_A 81 AGKMITAAYVPL 92 (114)
T ss_dssp TTEECEEEEECH
T ss_pred CCEEEEEEEEcH
Confidence 999999999865
No 207
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.52 E-value=3e-15 Score=111.56 Aligned_cols=104 Identities=13% Similarity=0.120 Sum_probs=77.1
Q ss_pred CCCceeeeecCCCcceeEEecCCCCCCCCHHHHHHHHHHHHHhhhCCcccceEEEecCCCCCCeEEeeeCCHHHHHHHHC
Q 024012 62 QIGTTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIYHVSWQSNFGFCCELDDECAQELTG 141 (274)
Q Consensus 62 ~~~s~~lf~vgnl~~~~~~~~~p~~~~~t~~~L~~~F~~~l~~~~G~v~~v~i~~~~~g~srgfgFV~f~~~e~a~~a~~ 141 (274)
+..+++|| |+|||. ++|+++|+++|.++ |.|.+++++ .++.++|||||+|.+.++|.+|+.
T Consensus 5 ~~~~~~l~-V~nlp~-----------~~t~~~l~~~F~~~-----G~v~~v~i~--~~~~~~g~afV~f~~~~~A~~A~~ 65 (115)
T 3lqv_A 5 PEVNRILY-IRNLPY-----------KITAEEMYDIFGKY-----GPIRQIRVG--NTPETRGTAYVVYEDIFDAKNAVD 65 (115)
T ss_dssp TTCCSEEE-EESCCT-----------TCCHHHHHHHHHTT-----SCEEEEEEE--CSTTTTTCEEEEESSHHHHHHHHH
T ss_pred CCCCCEEE-EeCCCC-----------CCCHHHHHHHHHhc-----CCeEEEEEe--eCCCCCcEEEEEECCHHHHHHHHH
Confidence 34567899 999999 69999999999977 999999988 467789999999999999977776
Q ss_pred -CCCceeecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccEEEEcCCCCCCCHHHHHHHHhccCC
Q 024012 142 -VPGVLSVQPDENFGSENKDYGGNNLQNSMVPSDSSEASPTQIKTKKLFVTGLSFYTSEKTLRAAFEGFGE 211 (274)
Q Consensus 142 -~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~te~~L~~~F~~fG~ 211 (274)
|+|... .+..+........ . .. .+++...++++|+++|++||.
T Consensus 66 ~l~g~~~--------------~g~~l~v~~a~~~-----~----~~----~~~~~~~~~~~l~~~~~~~g~ 109 (115)
T 3lqv_A 66 HLSGFNV--------------SNRYLVVLYYNAN-----R----AF----QKMDTKKKEEQLKLLKEKYGI 109 (115)
T ss_dssp HHTTCBS--------------SSCBCEEEECCHH-----H----HT----TTSCHHHHHHHHHHHHHHHCC
T ss_pred HcCCCEE--------------CCeEEEEEEecCC-----h----hh----hhhhHhHhHHHHHHHHHHhCC
Confidence 677532 1111111110000 0 00 577888899999999999984
No 208
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.51 E-value=1.4e-14 Score=103.41 Aligned_cols=60 Identities=10% Similarity=0.135 Sum_probs=54.3
Q ss_pred ceeeeecCCCcceeEEecCCCCCCCCHHHHHHHHHHHHHhhhC-CcccceEEE-ecCCCCCCeEEeeeCCHHHHHHHHC
Q 024012 65 TTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLG-NEKDAQMCI-YHVSWQSNFGFCCELDDECAQELTG 141 (274)
Q Consensus 65 s~~lf~vgnl~~~~~~~~~p~~~~~t~~~L~~~F~~~l~~~~G-~v~~v~i~~-~~~g~srgfgFV~f~~~e~a~~a~~ 141 (274)
|++|| |+|||+ ++|+++|+++|+++ | .|.+|+++. ..+|.+||||||+|.+.++|++|++
T Consensus 1 S~~i~-v~nLp~-----------~~te~~l~~~F~~~-----G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~ 62 (91)
T 2lxi_A 1 SNIVM-LRMLPQ-----------AATEDDIRGQLQSH-----GVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWME 62 (91)
T ss_dssp CCEEE-EETCCS-----------SCCHHHHHHHHHHH-----TCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHH
T ss_pred CCEEE-EeCCCC-----------CCCHHHHHHHHHHh-----CCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHH
Confidence 46789 999999 79999999999988 9 899999877 4679999999999999999988874
No 209
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.50 E-value=1.2e-14 Score=105.57 Aligned_cols=66 Identities=15% Similarity=0.217 Sum_probs=58.0
Q ss_pred CceeeeecCCCcceeEEecCCCCCCCCHHHHHHHHHHHHHhhhCCcccceEEEe-cCCCCCCeEEeeeCCHHHHHHHH-C
Q 024012 64 GTTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIY-HVSWQSNFGFCCELDDECAQELT-G 141 (274)
Q Consensus 64 ~s~~lf~vgnl~~~~~~~~~p~~~~~t~~~L~~~F~~~l~~~~G~v~~v~i~~~-~~g~srgfgFV~f~~~e~a~~a~-~ 141 (274)
.+++|| |||||. ++|+++|+++|.++ |.|.+++++.+ .+|+++|||||+|.+.++|++|+ .
T Consensus 18 ~gt~lf-V~nLp~-----------~~te~~L~~~F~~~-----G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~ 80 (99)
T 4fxv_A 18 QGTNLI-VNYLPQ-----------NMTQDELRSLFSSI-----GEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINT 80 (99)
T ss_dssp CCSEEE-EESCCT-----------TCCHHHHHHHHHTT-----SCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHH
T ss_pred CCCEEE-EeCCCC-----------CCCHHHHHHHHHhc-----CCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHH
Confidence 467799 999999 69999999999977 99999998884 57999999999999999997776 4
Q ss_pred CCCce
Q 024012 142 VPGVL 146 (274)
Q Consensus 142 ~~g~~ 146 (274)
|+|..
T Consensus 81 lng~~ 85 (99)
T 4fxv_A 81 LNGLR 85 (99)
T ss_dssp HTTCE
T ss_pred hCCCE
Confidence 67753
No 210
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.49 E-value=2.1e-14 Score=104.41 Aligned_cols=59 Identities=14% Similarity=0.198 Sum_probs=51.3
Q ss_pred eeeeecCCCcceeEEecCCCCCCCCHHHHHHHHHHHHHhhhCCcccceEEEecCCCCCCeEEeeeCCHHHHHHHHC-CCC
Q 024012 66 TLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIYHVSWQSNFGFCCELDDECAQELTG-VPG 144 (274)
Q Consensus 66 ~~lf~vgnl~~~~~~~~~p~~~~~t~~~L~~~F~~~l~~~~G~v~~v~i~~~~~g~srgfgFV~f~~~e~a~~a~~-~~g 144 (274)
++|| |+|||. ++|+++|+++|.++ |.|.+++++.+ ++|||||+|.+.++|++|++ |+|
T Consensus 1 ~~l~-V~nLp~-----------~~t~~~l~~~F~~~-----G~i~~v~i~~~----~~g~afV~f~~~~~a~~A~~~l~g 59 (101)
T 2hvz_A 1 MKVY-VGNLGT-----------GAGKGELERAFSYY-----GPLRTVWIARN----PPGFAFVEFEDPRDAEDAVRGLDG 59 (101)
T ss_dssp CEEE-EECCCS-----------SCSHHHHHHHHHHH-----CCCSEEEEESS----SSSEEEEECSSHHHHHHHHHHHHH
T ss_pred CEEE-EeCCCC-----------CCCHHHHHHHHHhc-----CCeEEEEEeeC----CCCEEEEEECCHHHHHHHHHHHCC
Confidence 3688 999999 69999999999988 99999998855 89999999999999977765 555
Q ss_pred c
Q 024012 145 V 145 (274)
Q Consensus 145 ~ 145 (274)
.
T Consensus 60 ~ 60 (101)
T 2hvz_A 60 K 60 (101)
T ss_dssp S
T ss_pred C
Confidence 3
No 211
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.48 E-value=2.4e-14 Score=109.84 Aligned_cols=68 Identities=6% Similarity=-0.122 Sum_probs=60.7
Q ss_pred CCCCceeeeecCCCcceeEEecCCCCCCCCHHHHHHHHHHHHHhhhCC---cccceEEEecCCCCCCeEEeeeCCHHHHH
Q 024012 61 SQIGTTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGN---EKDAQMCIYHVSWQSNFGFCCELDDECAQ 137 (274)
Q Consensus 61 ~~~~s~~lf~vgnl~~~~~~~~~p~~~~~t~~~L~~~F~~~l~~~~G~---v~~v~i~~~~~g~srgfgFV~f~~~e~a~ 137 (274)
+.....+|| |+|||+ ++|+++|+++|.++ |. |.+|+|+.+..|+++|||||+|.+.++|+
T Consensus 40 ~~~~~~~lf-VgnLp~-----------~~te~dL~~~F~~~-----G~v~~v~~v~i~~d~~g~srG~aFV~F~~~e~a~ 102 (136)
T 2hgl_A 40 EGGEGFVVK-LRGLPW-----------SCSVEDVQNFLSDC-----TIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVK 102 (136)
T ss_dssp SCCTTCEEE-EESCCT-----------TCCHHHHHHHTTTC-----CCSSSSTTEEEEECSSSCEEEEEEEECSSHHHHH
T ss_pred CCCCCCEEE-EeCCCC-----------CCCHHHHHHHHHHh-----CCcCceeEEEEEECCCCCCCeEEEEEECCHHHHH
Confidence 445667899 999999 69999999999977 99 89999998777999999999999999999
Q ss_pred HHHCCCCc
Q 024012 138 ELTGVPGV 145 (274)
Q Consensus 138 ~a~~~~g~ 145 (274)
+|++++|.
T Consensus 103 ~Al~~~g~ 110 (136)
T 2hgl_A 103 MALKKDRE 110 (136)
T ss_dssp HHHTTTEE
T ss_pred HHHhcCCC
Confidence 99988764
No 212
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.48 E-value=3.4e-14 Score=106.45 Aligned_cols=67 Identities=6% Similarity=-0.131 Sum_probs=60.1
Q ss_pred CCCceeeeecCCCcceeEEecCCCCCCCCHHHHHHHHHHHHHhhhCC---cccceEEEecCCCCCCeEEeeeCCHHHHHH
Q 024012 62 QIGTTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGN---EKDAQMCIYHVSWQSNFGFCCELDDECAQE 138 (274)
Q Consensus 62 ~~~s~~lf~vgnl~~~~~~~~~p~~~~~t~~~L~~~F~~~l~~~~G~---v~~v~i~~~~~g~srgfgFV~f~~~e~a~~ 138 (274)
.....+|| |+|||+ ++|+++|+++|.++ |. |.+|+|+.+..|+++|||||+|.+.++|++
T Consensus 14 ~~~~~~l~-V~nLp~-----------~~te~~l~~~F~~~-----G~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~ 76 (118)
T 2db1_A 14 GGEGYVVK-LRGLPW-----------SCSIEDVQNFLSDC-----TIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKL 76 (118)
T ss_dssp BCCCCEEE-EESCCT-----------TCCHHHHHHHTTTS-----CBTTGGGGEEEEECSSSCEEEEEEEEBSSHHHHHH
T ss_pred CCCCcEEE-EeCCCC-----------CCCHHHHHHHHHHc-----CCccCceeEEEEECCCCCCCeEEEEEECCHHHHHH
Confidence 34567799 999999 69999999999977 98 899999988779999999999999999999
Q ss_pred HHCCCCc
Q 024012 139 LTGVPGV 145 (274)
Q Consensus 139 a~~~~g~ 145 (274)
|++++|.
T Consensus 77 Al~~~g~ 83 (118)
T 2db1_A 77 ALKKDRE 83 (118)
T ss_dssp HGGGTTE
T ss_pred HHhcCCC
Confidence 9988774
No 213
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.47 E-value=2e-14 Score=104.95 Aligned_cols=67 Identities=6% Similarity=-0.092 Sum_probs=59.0
Q ss_pred CCCCceeeeecCCCcceeEEecCCCCCCCCHHHHHHHHHHHHHhhhCCcccceEEEecCCCCCCeEEeeeCCHHHHHHHH
Q 024012 61 SQIGTTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIYHVSWQSNFGFCCELDDECAQELT 140 (274)
Q Consensus 61 ~~~~s~~lf~vgnl~~~~~~~~~p~~~~~t~~~L~~~F~~~l~~~~G~v~~v~i~~~~~g~srgfgFV~f~~~e~a~~a~ 140 (274)
.+....+|| |+|||+ ++|+++|+++|.++ | +.+|+|+.+.+|+++|||||+|.+.++|++|+
T Consensus 11 ~~~~~~~l~-V~nLp~-----------~~te~~l~~~F~~~-----G-~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al 72 (102)
T 1wez_A 11 QSTTGHCVH-MRGLPY-----------RATENDIYNFFSPL-----N-PMRVHIEIGPDGRVTGEADVEFATHEDAVAAM 72 (102)
T ss_dssp CCSSSCEEE-EESCCT-----------TCCHHHHHHSSCSC-----C-CSEEEEEESSSSCEEEEEEEECSSSHHHHHHH
T ss_pred CCCCCCEEE-EeCCCC-----------CCCHHHHHHHHHHc-----C-ceEEEEEECCCCCEeeEEEEEECCHHHHHHHH
Confidence 445567899 999999 69999999999977 9 45999998889999999999999999999999
Q ss_pred CCCCc
Q 024012 141 GVPGV 145 (274)
Q Consensus 141 ~~~g~ 145 (274)
++++.
T Consensus 73 ~~~~~ 77 (102)
T 1wez_A 73 AKDKA 77 (102)
T ss_dssp TTSSC
T ss_pred HhCCC
Confidence 88764
No 214
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.47 E-value=1.9e-13 Score=95.69 Aligned_cols=60 Identities=13% Similarity=0.170 Sum_probs=51.6
Q ss_pred CceeeeecCCCcceeEEecCCCCCCCCHHHHHHHHHHHHHhhhCCcccceEEEecCCCCCCeEEeeeCCHHHHHHHH-CC
Q 024012 64 GTTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIYHVSWQSNFGFCCELDDECAQELT-GV 142 (274)
Q Consensus 64 ~s~~lf~vgnl~~~~~~~~~p~~~~~t~~~L~~~F~~~l~~~~G~v~~v~i~~~~~g~srgfgFV~f~~~e~a~~a~-~~ 142 (274)
.|..|+ ||||++ .+|+++|+++|.++ |+|.++++.. +||||||+|.++++|++|+ .|
T Consensus 6 ~~~wL~-VgNL~~-----------~~te~~L~~lF~q~-----G~V~~~~l~~-----~kGfaFVey~~~~eA~~Ai~~L 63 (89)
T 2wbr_A 6 GSSWLL-LKNLTA-----------QIDGPTLRTLCMQH-----GPLVSFHPYL-----NQGIALCKYTTREEANKAQMAL 63 (89)
T ss_dssp CCCEEE-EECCCT-----------TCCCHHHHHHHHHH-----SCEEEEEEET-----TTTEEEEEESSHHHHHHHHHHH
T ss_pred ccceEE-EeCCCc-----------cCCHHHHHHHHHhh-----CCEEEEEEcC-----CCcEEEEEECCHHHHHHHHHHh
Confidence 566788 999999 79999999999999 9999999863 7999999999999995554 45
Q ss_pred CCc
Q 024012 143 PGV 145 (274)
Q Consensus 143 ~g~ 145 (274)
||.
T Consensus 64 n~~ 66 (89)
T 2wbr_A 64 NNC 66 (89)
T ss_dssp TTE
T ss_pred cCC
Confidence 664
No 215
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.47 E-value=4.3e-14 Score=103.47 Aligned_cols=67 Identities=9% Similarity=0.024 Sum_probs=59.2
Q ss_pred CCCceeeeecCCCcceeEEecCCCCCCCCHHHHHHHHHHHHHhhhCCccc-ceEEEecCCCCCCeEEeeeCCHHHHHHHH
Q 024012 62 QIGTTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKD-AQMCIYHVSWQSNFGFCCELDDECAQELT 140 (274)
Q Consensus 62 ~~~s~~lf~vgnl~~~~~~~~~p~~~~~t~~~L~~~F~~~l~~~~G~v~~-v~i~~~~~g~srgfgFV~f~~~e~a~~a~ 140 (274)
.....+|| |+|||+ ++|+++|+++|.++ |.|.+ ++|+.+.+|+++|||||+|.++++|++|+
T Consensus 12 ~~~~~~l~-V~nLp~-----------~~te~~l~~~F~~~-----G~v~~~v~i~~~~~g~~~G~afV~F~~~~~a~~A~ 74 (104)
T 1wg5_A 12 TANDGFVR-LRGLPF-----------GCSKEEIVQFFSGL-----EIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKAL 74 (104)
T ss_dssp CSCCCEEE-EESCCT-----------TCCHHHHHHHTTTC-----CEEEEEEECCBCSSSCBCSEEEEEESSHHHHHHHH
T ss_pred CCCCCEEE-EeCCCC-----------CCCHHHHHHHHHhc-----CCcceeEEEEECCCCCcceEEEEEECCHHHHHHHH
Confidence 34567899 999999 69999999999977 99987 88877889999999999999999999998
Q ss_pred CCCCc
Q 024012 141 GVPGV 145 (274)
Q Consensus 141 ~~~g~ 145 (274)
..+|.
T Consensus 75 ~~~~~ 79 (104)
T 1wg5_A 75 KKHKE 79 (104)
T ss_dssp TTTTC
T ss_pred HhCcc
Confidence 87664
No 216
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.45 E-value=8.2e-14 Score=103.70 Aligned_cols=66 Identities=6% Similarity=0.002 Sum_probs=59.6
Q ss_pred CCceeeeecCCCcceeEEecCCCCCCCCHHHHHHHHHHHHHhhhCCc-ccceEEEecCCCCCCeEEeeeCCHHHHHHHHC
Q 024012 63 IGTTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNE-KDAQMCIYHVSWQSNFGFCCELDDECAQELTG 141 (274)
Q Consensus 63 ~~s~~lf~vgnl~~~~~~~~~p~~~~~t~~~L~~~F~~~l~~~~G~v-~~v~i~~~~~g~srgfgFV~f~~~e~a~~a~~ 141 (274)
....+|| |+|||+ ++|+++|+++|.++ |.| .+|+|+.+.+|+++|||||+|.+.++|++|++
T Consensus 13 ~~~~~l~-V~nLp~-----------~~t~~~l~~~F~~~-----g~v~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~ 75 (114)
T 2cpy_A 13 SAKVCAH-ITNIPF-----------SITKMDVLQFLEGI-----PVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSER 75 (114)
T ss_dssp SCCCEEE-EESCCT-----------TSCHHHHHHHTTTS-----CCCSTTEEECCCTTSSCSSCEEEECSSHHHHHHHGG
T ss_pred CCccEEE-EeCcCC-----------cCCHHHHHHHHHhC-----CCcCCeEEEEECCCCCcceEEEEEECCHHHHHHHHH
Confidence 4567799 999999 69999999999977 999 89999987899999999999999999999988
Q ss_pred CCCc
Q 024012 142 VPGV 145 (274)
Q Consensus 142 ~~g~ 145 (274)
++|.
T Consensus 76 ~~~~ 79 (114)
T 2cpy_A 76 LHRK 79 (114)
T ss_dssp GCSE
T ss_pred hCCC
Confidence 7764
No 217
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.44 E-value=7.3e-14 Score=102.75 Aligned_cols=68 Identities=6% Similarity=-0.056 Sum_probs=59.7
Q ss_pred CCCCceeeeecCCCcceeEEecCCCCCCCCHHHHHHHHHHHHHhhhCC---cccceEEEecCCCCCCeEEeeeCCHHHHH
Q 024012 61 SQIGTTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGN---EKDAQMCIYHVSWQSNFGFCCELDDECAQ 137 (274)
Q Consensus 61 ~~~~s~~lf~vgnl~~~~~~~~~p~~~~~t~~~L~~~F~~~l~~~~G~---v~~v~i~~~~~g~srgfgFV~f~~~e~a~ 137 (274)
......+|| |+|||+ ++|+++|+++|.++ |. |.+|+|+.+..|+++|||||+|.+.++|+
T Consensus 7 ~~~~~~~l~-V~nLp~-----------~~te~~l~~~F~~~-----g~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~ 69 (107)
T 2lmi_A 7 EVDDVFLIR-AQGLPW-----------SCTMEDVLNFFSDC-----RIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQ 69 (107)
T ss_dssp CCSSCCEEE-EECCCS-----------SCCSHHHHHHTTTS-----CBTTTTTTEECCCCTTSTTCSEEEEEBSSHHHHH
T ss_pred CCCCccEEE-EeCCCC-----------CCCHHHHHHHHHhc-----CCcCCcceEEEEECCCCCEeeEEEEEECCHHHHH
Confidence 334567799 999999 69999999999976 87 89999988777999999999999999999
Q ss_pred HHHCCCCc
Q 024012 138 ELTGVPGV 145 (274)
Q Consensus 138 ~a~~~~g~ 145 (274)
+|+.++|.
T Consensus 70 ~Al~~~~~ 77 (107)
T 2lmi_A 70 KALEKHRM 77 (107)
T ss_dssp HHHTTTTC
T ss_pred HHHHhCcc
Confidence 99988764
No 218
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.44 E-value=2.3e-13 Score=98.46 Aligned_cols=68 Identities=12% Similarity=0.139 Sum_probs=59.3
Q ss_pred CCCceeeeecCCCcceeEEecCCCCCCCCHHHHHHHHHHHHHhhhCCcc-cceEEEe-cCCCCCCeEEeeeCCHHHHHHH
Q 024012 62 QIGTTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEK-DAQMCIY-HVSWQSNFGFCCELDDECAQEL 139 (274)
Q Consensus 62 ~~~s~~lf~vgnl~~~~~~~~~p~~~~~t~~~L~~~F~~~l~~~~G~v~-~v~i~~~-~~g~srgfgFV~f~~~e~a~~a 139 (274)
...+++|| |+|||. ++|+++|+++|.++ |.|. +++++.+ .+|.++|||||+|.+.++|++|
T Consensus 6 ~~~~~~l~-V~nLp~-----------~~t~~~l~~~F~~~-----G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A 68 (99)
T 2div_A 6 SGMAASLW-MGDLEP-----------YMDENFISRAFATM-----GETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKC 68 (99)
T ss_dssp CSSSSEEE-ECSCCT-----------TCCHHHHHHHHHHT-----TCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHH
T ss_pred CCCccEEE-EeCCCC-----------CCCHHHHHHHHHHh-----CCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHH
Confidence 34567899 999999 69999999999987 9999 9998885 5899999999999999999776
Q ss_pred HC-CCCce
Q 024012 140 TG-VPGVL 146 (274)
Q Consensus 140 ~~-~~g~~ 146 (274)
+. |+|..
T Consensus 69 ~~~l~g~~ 76 (99)
T 2div_A 69 LHKINGKP 76 (99)
T ss_dssp HHTTTTSE
T ss_pred HHHHcCCc
Confidence 65 78754
No 219
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.44 E-value=6e-14 Score=97.79 Aligned_cols=64 Identities=9% Similarity=0.062 Sum_probs=55.3
Q ss_pred ceeeeecCCCcceeEEecCCCCCCC------CHHHHHHHHHHHHHhhhCCcccceEEEecCCCCCCeEEeeeCCHHHHHH
Q 024012 65 TTLLFPLGTTKHWLVRMDKPGVGVV------TKAQMVDRYAQILTKVLGNEKDAQMCIYHVSWQSNFGFCCELDDECAQE 138 (274)
Q Consensus 65 s~~lf~vgnl~~~~~~~~~p~~~~~------t~~~L~~~F~~~l~~~~G~v~~v~i~~~~~g~srgfgFV~f~~~e~a~~ 138 (274)
+++|| |||||. ++ |+++|+++|.++ |.|.++++. +.+|+++|||||+|.+.++|++
T Consensus 1 ~~~l~-V~nLp~-----------~~~~~~~~t~~~l~~~F~~~-----G~i~~v~i~-~~~g~~~g~afV~f~~~~~A~~ 62 (81)
T 2krb_A 1 DSVIV-VDNVPQ-----------VGPDRLEKLKNVIHKIFSKF-----GKITNDFYP-EEDGKTKGYIFLEYASPAHAVD 62 (81)
T ss_dssp CCEEE-EESCCC-----------CCTTTHHHHHHHHHHHHHTT-----CCEEEEECC-CBTTBCCCEEEEEESSHHHHHH
T ss_pred CCEEE-EeCCCC-----------CcHHHHHHHHHHHHHHHhhc-----CCeEEEEec-CCCCcEeEEEEEEECCHHHHHH
Confidence 35788 999998 47 779999999977 999999987 6789999999999999999977
Q ss_pred HHC-CCCce
Q 024012 139 LTG-VPGVL 146 (274)
Q Consensus 139 a~~-~~g~~ 146 (274)
|+. |+|..
T Consensus 63 Ai~~lng~~ 71 (81)
T 2krb_A 63 AVKNADGYK 71 (81)
T ss_dssp HHTTSSSCC
T ss_pred HHHHhcCcc
Confidence 775 67753
No 220
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.44 E-value=9.7e-14 Score=95.16 Aligned_cols=61 Identities=16% Similarity=0.279 Sum_probs=55.3
Q ss_pred eeecCCCcceeEEecCCCCCCCCHHHHHHHHHHHHHhhhCCcccceEEEec-CCCCCCeEEeeeCCHHHHHHHHCCCCc
Q 024012 68 LFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIYH-VSWQSNFGFCCELDDECAQELTGVPGV 145 (274)
Q Consensus 68 lf~vgnl~~~~~~~~~p~~~~~t~~~L~~~F~~~l~~~~G~v~~v~i~~~~-~g~srgfgFV~f~~~e~a~~a~~~~g~ 145 (274)
|| |+|||. ++|+++|+++|.++ |.|.+++++.+. +|.++|||||+|.+.++|++|++++|.
T Consensus 2 l~-v~nlp~-----------~~t~~~l~~~F~~~-----G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~ 63 (75)
T 2mss_A 2 IF-VGGLSV-----------NTTVEDVKHYFEQF-----GKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFH 63 (75)
T ss_dssp EE-EECCCS-----------SCCHHHHHHHHHTT-----SCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHSSSCC
T ss_pred EE-EecCCC-----------CCCHHHHHHHHHhc-----CCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHCCCC
Confidence 67 999999 69999999999977 999999988754 799999999999999999999988764
No 221
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.43 E-value=3.7e-14 Score=109.15 Aligned_cols=67 Identities=6% Similarity=-0.091 Sum_probs=57.8
Q ss_pred CCCCceeeeecCCCcceeEEecCCCCCCCCHHHHHHHHHHHHHhhhCCcccceEEEecCCCCCCeEEeeeCCHHHHHHHH
Q 024012 61 SQIGTTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIYHVSWQSNFGFCCELDDECAQELT 140 (274)
Q Consensus 61 ~~~~s~~lf~vgnl~~~~~~~~~p~~~~~t~~~L~~~F~~~l~~~~G~v~~v~i~~~~~g~srgfgFV~f~~~e~a~~a~ 140 (274)
......+|| |+|||+ ++|+++|+++|.++ | +.+|+|+.+.+|+++|||||+|.+.++|++|+
T Consensus 42 ~~~~~~~lf-V~nLp~-----------~~te~dL~~~F~~~-----G-i~~v~i~~d~~g~srGfaFV~F~~~e~A~~Al 103 (139)
T 2hgn_A 42 QSTTGHCVH-MRGLPY-----------KATENDIYNFFSPL-----N-PVRVHIEIGPDGRVTGEADVEFATHEEAVAAM 103 (139)
T ss_dssp ---CCCCEE-CCSCCT-----------TCCHHHHHHHHCSC-----C-CSEEECCCSSSSCSSCCCEEECSHHHHHHHHT
T ss_pred CCCCCCEEE-EeCCCC-----------CCCHHHHHHHHHhc-----C-CeEEEEEECCCCCCceEEEEEeCCHHHHHHHH
Confidence 334566799 999999 79999999999977 9 77999888778999999999999999999998
Q ss_pred CCCCc
Q 024012 141 GVPGV 145 (274)
Q Consensus 141 ~~~g~ 145 (274)
++++.
T Consensus 104 ~~~g~ 108 (139)
T 2hgn_A 104 SKDRA 108 (139)
T ss_dssp TCCSC
T ss_pred hhCCC
Confidence 88774
No 222
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.43 E-value=8.5e-14 Score=102.72 Aligned_cols=65 Identities=11% Similarity=0.057 Sum_probs=57.0
Q ss_pred CceeeeecCCCcceeEEecCCCCCCCCHHHHHHHHHHHHHhhhCCcccceEEEecCCCCCCeEEeeeCCHHHHHHHHCCC
Q 024012 64 GTTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIYHVSWQSNFGFCCELDDECAQELTGVP 143 (274)
Q Consensus 64 ~s~~lf~vgnl~~~~~~~~~p~~~~~t~~~L~~~F~~~l~~~~G~v~~v~i~~~~~g~srgfgFV~f~~~e~a~~a~~~~ 143 (274)
.+.+|| |+|||+ ++|+++|+++|.++ .|.+|+|+.+..|+++|||||+|.++++|++|++++
T Consensus 15 ~~~~v~-V~nLp~-----------~~te~dl~~~F~~~------~v~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~~ 76 (109)
T 2dnn_A 15 DDLYVS-VHGMPF-----------SAMENDVRDFFHGL------RVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEALKRN 76 (109)
T ss_dssp HHHEEE-EECCCS-----------SCCHHHHHHHTTTS------CCCEEEECCCTTCCCCSEEEEECSSHHHHHHHHHTT
T ss_pred CCCEEE-EeCCCC-----------CCCHHHHHHHhccC------CeeEEEEEECCCCCCCeEEEEEECCHHHHHHHHhcC
Confidence 356788 999999 79999999999944 578899888778999999999999999999998888
Q ss_pred Cce
Q 024012 144 GVL 146 (274)
Q Consensus 144 g~~ 146 (274)
|..
T Consensus 77 ~~~ 79 (109)
T 2dnn_A 77 RML 79 (109)
T ss_dssp TEE
T ss_pred CCe
Confidence 753
No 223
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.43 E-value=2.3e-13 Score=99.74 Aligned_cols=68 Identities=10% Similarity=0.151 Sum_probs=59.2
Q ss_pred CCCCceeeeecCCCcceeEEecCCCCCCCCHHHHHHHHHHHHHhhhCCcccceEEEe-cCCCCCCeEEeeeCCHHHHHHH
Q 024012 61 SQIGTTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIY-HVSWQSNFGFCCELDDECAQEL 139 (274)
Q Consensus 61 ~~~~s~~lf~vgnl~~~~~~~~~p~~~~~t~~~L~~~F~~~l~~~~G~v~~v~i~~~-~~g~srgfgFV~f~~~e~a~~a 139 (274)
+...+++|| |+|||. ++|+++|+++|.++ |.|.+|+++.+ .+|.++|||||+|.+.++|++|
T Consensus 9 ~~~~~~~l~-V~nlp~-----------~~t~~~l~~~F~~~-----G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A 71 (106)
T 2dgp_A 9 KDHDAIKLF-IGQIPR-----------NLDEKDLKPLFEEF-----GKIYELTVLKDRFTGMHKGCAFLTYCERESALKA 71 (106)
T ss_dssp CCTTCEEEE-EESCCT-----------TCCHHHHHHHHHHH-----SCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHH
T ss_pred CCCCCCEEE-EeCCCC-----------CCCHHHHHHHHHhc-----CCeeEEEEEecCCCCCcceEEEEEECCHHHHHHH
Confidence 445678899 999999 69999999999988 99999998874 4699999999999999999777
Q ss_pred HC-CCCc
Q 024012 140 TG-VPGV 145 (274)
Q Consensus 140 ~~-~~g~ 145 (274)
+. |+|.
T Consensus 72 ~~~l~g~ 78 (106)
T 2dgp_A 72 QSALHEQ 78 (106)
T ss_dssp HHHHTTT
T ss_pred HHHhcCC
Confidence 74 6764
No 224
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.43 E-value=2e-13 Score=101.87 Aligned_cols=65 Identities=14% Similarity=0.161 Sum_probs=58.3
Q ss_pred CceeeeecCCCcceeEEecCCCCCCCCHHHHHHHHHHHHHhhhCCcccceEEEecCCCCCCeEEeeeCCHHHHHHHHC-C
Q 024012 64 GTTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIYHVSWQSNFGFCCELDDECAQELTG-V 142 (274)
Q Consensus 64 ~s~~lf~vgnl~~~~~~~~~p~~~~~t~~~L~~~F~~~l~~~~G~v~~v~i~~~~~g~srgfgFV~f~~~e~a~~a~~-~ 142 (274)
.+++|| |+|||. ++|+++|+++|.++ |.|.+|+++.+.+|.++|||||+|.+.++|++|++ |
T Consensus 6 ~~~~l~-V~nLp~-----------~~t~~~l~~~F~~~-----G~i~~v~i~~~~~g~~~g~afV~F~~~~~A~~Ai~~l 68 (116)
T 2fy1_A 6 HPGKLF-IGGLNR-----------ETNEKMLKAVFGKH-----GPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDM 68 (116)
T ss_dssp SCCEEE-EECCTT-----------TCCHHHHHHHHHTS-----SCCSEEEEECSTTTTCCCEEEEECSSHHHHHHHHHHC
T ss_pred CCCEEE-EeCCCC-----------CCCHHHHHHHHHhc-----CCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHh
Confidence 457799 999999 69999999999977 99999999987799999999999999999977764 7
Q ss_pred CCc
Q 024012 143 PGV 145 (274)
Q Consensus 143 ~g~ 145 (274)
+|.
T Consensus 69 ~g~ 71 (116)
T 2fy1_A 69 NGK 71 (116)
T ss_dssp SSC
T ss_pred CCC
Confidence 774
No 225
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.43 E-value=6.9e-14 Score=103.44 Aligned_cols=65 Identities=8% Similarity=0.015 Sum_probs=57.3
Q ss_pred CceeeeecCCCcceeEEecCCCCCCCCHHHHHHHHHHHHHhhhCCcccceEEEe-cCCCCCCeEEeeeCCHHHHHHHHC-
Q 024012 64 GTTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIY-HVSWQSNFGFCCELDDECAQELTG- 141 (274)
Q Consensus 64 ~s~~lf~vgnl~~~~~~~~~p~~~~~t~~~L~~~F~~~l~~~~G~v~~v~i~~~-~~g~srgfgFV~f~~~e~a~~a~~- 141 (274)
..++|| |+|||+ ++|+++|+++|+++ |.|.+|+|+.+ .+|+++|||||+|.+.++|++|++
T Consensus 5 p~~~lf-V~nL~~-----------~~te~~L~~~F~~~-----G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~ 67 (110)
T 3s8s_A 5 PLKEVT-FARLND-----------NVRETFLKDMCRKY-----GEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKN 67 (110)
T ss_dssp CCCEEE-EESCCT-----------TCCHHHHHHHHTTT-----SCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHH
T ss_pred CCcEEE-EECCCC-----------CCCHHHHHHHHHhc-----CCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHH
Confidence 457899 999999 69999999999977 99999999885 469999999999999999977764
Q ss_pred CCCc
Q 024012 142 VPGV 145 (274)
Q Consensus 142 ~~g~ 145 (274)
|||.
T Consensus 68 lng~ 71 (110)
T 3s8s_A 68 LHLT 71 (110)
T ss_dssp HTTC
T ss_pred hCCC
Confidence 7775
No 226
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.43 E-value=1.2e-13 Score=100.15 Aligned_cols=67 Identities=13% Similarity=0.202 Sum_probs=59.1
Q ss_pred CCCceeeeecCCCcceeEEecCCCCCCCCHHHHHHHHHHHHHhhhCCcccceEEEecCCCCCCeEEeeeCCHHHHHHHH-
Q 024012 62 QIGTTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIYHVSWQSNFGFCCELDDECAQELT- 140 (274)
Q Consensus 62 ~~~s~~lf~vgnl~~~~~~~~~p~~~~~t~~~L~~~F~~~l~~~~G~v~~v~i~~~~~g~srgfgFV~f~~~e~a~~a~- 140 (274)
...+++|| |+|||. ++|+++|+++|.++ |.|.+++++.+.+|.++|||||+|.+.++|++|+
T Consensus 14 ~~~~~~l~-v~nlp~-----------~~t~~~l~~~F~~~-----G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~ 76 (100)
T 2do4_A 14 SLEKHKLF-ISGLPF-----------SCTKEELEEICKAH-----GTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVM 76 (100)
T ss_dssp CCCCSCEE-EESCCT-----------TCCHHHHHHHHTTT-----SCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHH
T ss_pred CCCCCEEE-EeCCCC-----------CCCHHHHHHHHHhC-----CCeEEEEEEECCCCCEEeEEEEEECCHHHHHHHHH
Confidence 34567899 999999 69999999999977 9999999998889999999999999999997776
Q ss_pred CCCCc
Q 024012 141 GVPGV 145 (274)
Q Consensus 141 ~~~g~ 145 (274)
.|+|.
T Consensus 77 ~l~g~ 81 (100)
T 2do4_A 77 KMDGM 81 (100)
T ss_dssp HHTTE
T ss_pred HhCCC
Confidence 55764
No 227
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.43 E-value=1.9e-13 Score=102.97 Aligned_cols=65 Identities=12% Similarity=0.030 Sum_probs=57.8
Q ss_pred CceeeeecCCCcceeEEecCCCCCCCCHHHHHHHHHHHHHhhhCCc----ccceEEEecCCCCCCeEEeeeCCHHHHHHH
Q 024012 64 GTTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNE----KDAQMCIYHVSWQSNFGFCCELDDECAQEL 139 (274)
Q Consensus 64 ~s~~lf~vgnl~~~~~~~~~p~~~~~t~~~L~~~F~~~l~~~~G~v----~~v~i~~~~~g~srgfgFV~f~~~e~a~~a 139 (274)
...+|| |+|||+ ++|+++|+++|.++ |.| .+|+|+.+.+|+++|||||+|.+.++|++|
T Consensus 22 ~~~~v~-V~nLp~-----------~~te~dl~~~F~~~-----g~v~g~v~~v~i~~d~~gr~~G~aFV~F~~~~~A~~A 84 (123)
T 2dha_A 22 NQVIVR-MRGLPF-----------TATAEEVVAFFGQH-----CPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNA 84 (123)
T ss_dssp SCCEEE-ECSCCT-----------TCCHHHHHHHHHTT-----SCCTTGGGGEEEEECTTSCEEEEEEECCSSHHHHHHH
T ss_pred CCCEEE-EeCCCC-----------CCCHHHHHHHHHhh-----CCccCCcceEEEEECCCCCEeeEEEEEECCHHHHHHH
Confidence 456788 999999 79999999999977 875 689998888999999999999999999999
Q ss_pred HCCCCc
Q 024012 140 TGVPGV 145 (274)
Q Consensus 140 ~~~~g~ 145 (274)
++.++.
T Consensus 85 l~~~~~ 90 (123)
T 2dha_A 85 LRKHKD 90 (123)
T ss_dssp HTTTTE
T ss_pred HHhCCC
Confidence 987664
No 228
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.42 E-value=5.8e-13 Score=97.17 Aligned_cols=67 Identities=12% Similarity=0.180 Sum_probs=59.2
Q ss_pred CCceeeeecCCCcceeEEecCCCCCCCCHHHHHHHHHH-HHHhhhCCcccceEEEecCCCCCCeEEeeeCCHHHHHHHHC
Q 024012 63 IGTTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQ-ILTKVLGNEKDAQMCIYHVSWQSNFGFCCELDDECAQELTG 141 (274)
Q Consensus 63 ~~s~~lf~vgnl~~~~~~~~~p~~~~~t~~~L~~~F~~-~l~~~~G~v~~v~i~~~~~g~srgfgFV~f~~~e~a~~a~~ 141 (274)
..+.+|| |+|||. ++|+++|+++|.+ + |.|.+++++.+.+|.++|||||+|.+.++|++|+.
T Consensus 7 ~~~~~l~-V~nLp~-----------~~t~~~l~~~F~~~~-----G~v~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~ 69 (104)
T 2dhg_A 7 GPEYSLF-VGDLTP-----------DVDDGMLYEFFVKVY-----PSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALT 69 (104)
T ss_dssp SCCCCEE-EECCCT-----------TCCHHHHHHHHHHHC-----TTEEEEEEEECTTCCEEEEEEEEESCHHHHHHHHH
T ss_pred CCCcEEE-EeCCCC-----------CCCHHHHHHHHHHhC-----CCeEEEEEEECCCCCccceEEEEECCHHHHHHHHH
Confidence 3567799 999999 6999999999997 7 99999999987799999999999999999977765
Q ss_pred -CCCce
Q 024012 142 -VPGVL 146 (274)
Q Consensus 142 -~~g~~ 146 (274)
|+|..
T Consensus 70 ~l~g~~ 75 (104)
T 2dhg_A 70 ECQGAV 75 (104)
T ss_dssp HTTTCC
T ss_pred HccCCc
Confidence 77743
No 229
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.42 E-value=1.5e-13 Score=100.53 Aligned_cols=67 Identities=12% Similarity=0.069 Sum_probs=59.3
Q ss_pred CCceeeeecCCCcceeEEecCCCCCCCCHHHHHHHHHHHHHhhhCCcccceEEEecCCCCCCeEEeeeCCHHHHHHHHC-
Q 024012 63 IGTTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIYHVSWQSNFGFCCELDDECAQELTG- 141 (274)
Q Consensus 63 ~~s~~lf~vgnl~~~~~~~~~p~~~~~t~~~L~~~F~~~l~~~~G~v~~v~i~~~~~g~srgfgFV~f~~~e~a~~a~~- 141 (274)
..+++|| |+|||. ++|+++|+++|.++ |.|.+++|+.+.+|.++|||||+|.+.++|++|+.
T Consensus 13 ~~~~~l~-v~nLp~-----------~~t~~~l~~~F~~~-----G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~ 75 (105)
T 2dnh_A 13 GRDRKLF-VGMLNK-----------QQSEEDVLRLFQPF-----GVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHA 75 (105)
T ss_dssp CCCCEEE-EESCCT-----------TCCHHHHHHHHTTT-----SCEEEEEEEECSSSCEEEEEEEEESSHHHHHHHHHH
T ss_pred CCCCEEE-EeCCCC-----------CCCHHHHHHHHHhc-----CCeEEEEEEECCCCCcCcEEEEEeCCHHHHHHHHHH
Confidence 4567899 999999 69999999999977 99999999998899999999999999999977764
Q ss_pred CCCce
Q 024012 142 VPGVL 146 (274)
Q Consensus 142 ~~g~~ 146 (274)
|+|..
T Consensus 76 l~g~~ 80 (105)
T 2dnh_A 76 LHGSQ 80 (105)
T ss_dssp HSSCC
T ss_pred HcCCc
Confidence 67653
No 230
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.42 E-value=1.9e-13 Score=103.22 Aligned_cols=67 Identities=7% Similarity=0.009 Sum_probs=58.3
Q ss_pred CCCceeeeecCCCcceeEEecCCCCCCCCHHHHHHHHHHHHHhhhCCcccce-EEEecCCCCCCeEEeeeCCHHHHHHHH
Q 024012 62 QIGTTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQ-MCIYHVSWQSNFGFCCELDDECAQELT 140 (274)
Q Consensus 62 ~~~s~~lf~vgnl~~~~~~~~~p~~~~~t~~~L~~~F~~~l~~~~G~v~~v~-i~~~~~g~srgfgFV~f~~~e~a~~a~ 140 (274)
.....+|| |+|||+ ++|+++|+++|.++ |.|.++. +....+|+++|||||+|.+.++|++|+
T Consensus 22 ~~~~~~l~-V~nLp~-----------~~te~~l~~~F~~~-----G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al 84 (124)
T 1wel_A 22 HEAGFCVY-LKGLPF-----------EAENKHVIDFFKKL-----DIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAAL 84 (124)
T ss_dssp CCCCCEEE-EECCCT-----------TCCHHHHHHHSCSS-----CBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHH
T ss_pred CCCCcEEE-EeCCCC-----------CCCHHHHHHHHHhc-----CCccceEEEEECCCCCCCeEEEEEECCHHHHHHHH
Confidence 34567899 999999 69999999999977 9999965 455778999999999999999999999
Q ss_pred CCCCc
Q 024012 141 GVPGV 145 (274)
Q Consensus 141 ~~~g~ 145 (274)
.++|.
T Consensus 85 ~~~g~ 89 (124)
T 1wel_A 85 CRHKQ 89 (124)
T ss_dssp TSCSB
T ss_pred HhCCC
Confidence 88775
No 231
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.42 E-value=1e-13 Score=100.30 Aligned_cols=67 Identities=13% Similarity=0.224 Sum_probs=59.1
Q ss_pred CCCceeeeecCCCcceeEEecCCCCCCCCHHHHHHHHHHHHHhhhCCcccceEEEe-cCCCCCCeEEeeeCCHHHHHHHH
Q 024012 62 QIGTTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIY-HVSWQSNFGFCCELDDECAQELT 140 (274)
Q Consensus 62 ~~~s~~lf~vgnl~~~~~~~~~p~~~~~t~~~L~~~F~~~l~~~~G~v~~v~i~~~-~~g~srgfgFV~f~~~e~a~~a~ 140 (274)
...+++|| |+|||. ++|+++|+++|.++ |.|.+++++.+ .++.++|||||+|.+.++|++|+
T Consensus 7 ~~~~~~l~-V~nlp~-----------~~t~~~l~~~F~~~-----G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~ 69 (99)
T 2dgs_A 7 GSKSNKIF-VGGIPH-----------NCGETELREYFKKF-----GVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAV 69 (99)
T ss_dssp CSSCCEEE-EESCCS-----------SCCHHHHHHHHSSS-----SCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHH
T ss_pred CCCCCEEE-EeCCCC-----------CCCHHHHHHHHHhc-----CCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHH
Confidence 34667899 999999 69999999999977 99999998875 57899999999999999998888
Q ss_pred CCCCc
Q 024012 141 GVPGV 145 (274)
Q Consensus 141 ~~~g~ 145 (274)
+++|.
T Consensus 70 ~~~~~ 74 (99)
T 2dgs_A 70 NMHFH 74 (99)
T ss_dssp HHCCC
T ss_pred HhCCC
Confidence 77764
No 232
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.41 E-value=2e-13 Score=98.81 Aligned_cols=66 Identities=17% Similarity=0.180 Sum_probs=58.7
Q ss_pred CCceeeeecCCCcceeEEecCCCCCCCCHHHHHHHHHHHHHhhhCCcccceEEEec-CCCCCCeEEeeeCCHHHHHHHH-
Q 024012 63 IGTTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIYH-VSWQSNFGFCCELDDECAQELT- 140 (274)
Q Consensus 63 ~~s~~lf~vgnl~~~~~~~~~p~~~~~t~~~L~~~F~~~l~~~~G~v~~v~i~~~~-~g~srgfgFV~f~~~e~a~~a~- 140 (274)
..+++|| |+|||. ++|+++|+++|.++ |.|.+++++.+. +|.++|||||+|.+.++|++|+
T Consensus 6 ~~~~~l~-V~nlp~-----------~~t~~~l~~~F~~~-----G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~ 68 (99)
T 1whw_A 6 SGSGRLF-VRNLSY-----------TSSEEDLEKLFSAY-----GPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYA 68 (99)
T ss_dssp CSCEEEE-EECCCT-----------TCCHHHHHHHHHTT-----SCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHH
T ss_pred CCCCEEE-EeCCCC-----------CCCHHHHHHHHHhc-----CCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHH
Confidence 4678899 999999 69999999999977 999999988765 8999999999999999997777
Q ss_pred CCCCc
Q 024012 141 GVPGV 145 (274)
Q Consensus 141 ~~~g~ 145 (274)
.|+|.
T Consensus 69 ~l~g~ 73 (99)
T 1whw_A 69 EVDGQ 73 (99)
T ss_dssp HTTTE
T ss_pred HhCCC
Confidence 77874
No 233
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.41 E-value=1.1e-13 Score=97.80 Aligned_cols=66 Identities=15% Similarity=0.247 Sum_probs=58.3
Q ss_pred CCceeeeecCCCcceeEEecCCCCCCCCHHHHHHHHHHHHHhhhCCcccceEEEe-cCCCCCCeEEeeeCCHHHHHHHHC
Q 024012 63 IGTTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIY-HVSWQSNFGFCCELDDECAQELTG 141 (274)
Q Consensus 63 ~~s~~lf~vgnl~~~~~~~~~p~~~~~t~~~L~~~F~~~l~~~~G~v~~v~i~~~-~~g~srgfgFV~f~~~e~a~~a~~ 141 (274)
...++|| |+|||+ ++|+++|+++|.++ |.|.+++++.+ .+|+++|||||+|.+.++|++|++
T Consensus 9 ~~~~~l~-V~nlp~-----------~~t~~~l~~~F~~~-----G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~ 71 (87)
T 3s7r_A 9 EDAGKMF-VGGLSW-----------DTSKKDLKDYFTKF-----GEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLD 71 (87)
T ss_dssp SCTTEEE-EECCCT-----------TCCHHHHHHHHTTT-----SCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHH
T ss_pred CCCCEEE-EeCCCC-----------CCCHHHHHHHHHhC-----CCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHH
Confidence 4567899 999999 69999999999977 99999998875 569999999999999999988887
Q ss_pred CCCc
Q 024012 142 VPGV 145 (274)
Q Consensus 142 ~~g~ 145 (274)
+++.
T Consensus 72 ~~~~ 75 (87)
T 3s7r_A 72 QKEH 75 (87)
T ss_dssp SSCE
T ss_pred hCCC
Confidence 7653
No 234
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.41 E-value=2.4e-13 Score=97.70 Aligned_cols=66 Identities=11% Similarity=0.216 Sum_probs=58.2
Q ss_pred CceeeeecCCCcceeEEecCCCCCCCCHHHHHHHHHHHHHhhhCCcccc-eEEEe-cCCCCCCeEEeeeCCHHHHHHHHC
Q 024012 64 GTTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDA-QMCIY-HVSWQSNFGFCCELDDECAQELTG 141 (274)
Q Consensus 64 ~s~~lf~vgnl~~~~~~~~~p~~~~~t~~~L~~~F~~~l~~~~G~v~~v-~i~~~-~~g~srgfgFV~f~~~e~a~~a~~ 141 (274)
.+++|| |+|||. ++|+++|+++|.++ |.|.++ +++.+ .+|.++|||||+|.+.++|++|+.
T Consensus 4 ~~~~l~-V~nLp~-----------~~t~~~l~~~F~~~-----G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~ 66 (96)
T 1x5t_A 4 GSSGIF-IGNLDP-----------EIDEKLLYDTFSAF-----GVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIE 66 (96)
T ss_dssp CCCEEE-EECCCT-----------TCCHHHHHHHHHTT-----SCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHH
T ss_pred CCCEEE-EeCCCC-----------CCCHHHHHHHHHhc-----CCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHH
Confidence 467899 999999 69999999999977 999999 88875 789999999999999999977766
Q ss_pred -CCCce
Q 024012 142 -VPGVL 146 (274)
Q Consensus 142 -~~g~~ 146 (274)
|+|..
T Consensus 67 ~l~g~~ 72 (96)
T 1x5t_A 67 AMNGQY 72 (96)
T ss_dssp TTTTCE
T ss_pred HcCCCE
Confidence 78753
No 235
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.41 E-value=2.1e-13 Score=98.76 Aligned_cols=68 Identities=18% Similarity=0.113 Sum_probs=59.3
Q ss_pred CCCCceeeeecCCCcceeEEecCCCCCCCCHHHHHHHHHHHHHhhhCCccc--------ceEEEe-cCCCCCCeEEeeeC
Q 024012 61 SQIGTTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKD--------AQMCIY-HVSWQSNFGFCCEL 131 (274)
Q Consensus 61 ~~~~s~~lf~vgnl~~~~~~~~~p~~~~~t~~~L~~~F~~~l~~~~G~v~~--------v~i~~~-~~g~srgfgFV~f~ 131 (274)
++....+|| |||||. ++|+++|+++|.++ |.|.+ ++++.+ .+|+++|||||+|.
T Consensus 9 ~~~~~~~l~-V~nLp~-----------~~t~~~l~~~F~~~-----G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~ 71 (99)
T 2la6_A 9 SHSDNNTIF-VQGLGE-----------NVTIESVADYFKQI-----GIIKTNKKTGQPMINLYTDRETGKLKGEATVSFD 71 (99)
T ss_dssp SCCCCSEEE-EECCCS-----------SCCHHHHHHHHTTT-----SCBCEETTTTEESEEEEECTTTCSEEEEEEEEBS
T ss_pred CCCCCCEEE-EeCCCC-----------CCCHHHHHHHHHHh-----CCEeeccccccccEEEEecCCCCCeeeEEEEEEC
Confidence 455677899 999999 69999999999977 99999 888875 67999999999999
Q ss_pred CHHHHHHHHC-CCCc
Q 024012 132 DDECAQELTG-VPGV 145 (274)
Q Consensus 132 ~~e~a~~a~~-~~g~ 145 (274)
+.++|++|++ |+|.
T Consensus 72 ~~~~a~~Ai~~l~g~ 86 (99)
T 2la6_A 72 DPPSAKAAIDWFDGK 86 (99)
T ss_dssp SHHHHHHHHHHHTTC
T ss_pred CHHHHHHHHHHhCCC
Confidence 9999977775 6775
No 236
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.41 E-value=1.1e-13 Score=99.60 Aligned_cols=64 Identities=8% Similarity=0.066 Sum_probs=54.0
Q ss_pred CceeeeecCCCcceeEEecCCCCCCCCHHHHHHHHHHHHHhhhCC--cccceEEE-ecCCCCCCeEEeeeCCHHHHHHHH
Q 024012 64 GTTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGN--EKDAQMCI-YHVSWQSNFGFCCELDDECAQELT 140 (274)
Q Consensus 64 ~s~~lf~vgnl~~~~~~~~~p~~~~~t~~~L~~~F~~~l~~~~G~--v~~v~i~~-~~~g~srgfgFV~f~~~e~a~~a~ 140 (274)
.-++|| |+|||+ ++|+++|+++|+++ |. +.+|++++ ..+|++||||||+|.+.++|++|+
T Consensus 8 ~m~tlf-V~nL~~-----------~~tee~L~~~F~~~-----G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai 70 (95)
T 2lkz_A 8 HMDTII-LRNIAP-----------HTVVDSIMTALSPY-----ASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLL 70 (95)
T ss_dssp CCCEEE-EESCCT-----------TCCHHHHHHHSTTT-----CCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHH
T ss_pred ccCEEE-EeCCCC-----------cCCHHHHHHHHHhh-----CCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHH
Confidence 456799 999999 69999999999977 95 67888776 467999999999999999997776
Q ss_pred C-CCC
Q 024012 141 G-VPG 144 (274)
Q Consensus 141 ~-~~g 144 (274)
+ |||
T Consensus 71 ~~lng 75 (95)
T 2lkz_A 71 QILQS 75 (95)
T ss_dssp HHHHS
T ss_pred HHhcC
Confidence 4 454
No 237
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.40 E-value=9.7e-14 Score=98.76 Aligned_cols=62 Identities=11% Similarity=0.197 Sum_probs=53.6
Q ss_pred eeeecCCCcceeEEecCCCCCCCCHHHHHHHHHHHHHhhhC--CcccceEEEe-cCCCCCCeEEeeeCCHHHHHHHH-CC
Q 024012 67 LLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLG--NEKDAQMCIY-HVSWQSNFGFCCELDDECAQELT-GV 142 (274)
Q Consensus 67 ~lf~vgnl~~~~~~~~~p~~~~~t~~~L~~~F~~~l~~~~G--~v~~v~i~~~-~~g~srgfgFV~f~~~e~a~~a~-~~ 142 (274)
+|| |||||+ ++|+++|+++|.++ | .|.+++++.+ .+|+++|||||+|.+.++|++|+ .|
T Consensus 3 ~l~-V~nL~~-----------~~t~~~l~~~F~~~-----G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l 65 (90)
T 3p5t_L 3 ALY-IGNLTW-----------WTTDEDLTEAVHSL-----GVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLL 65 (90)
T ss_dssp -CE-EESCCT-----------TCCHHHHHHHHHTT-----TCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHG
T ss_pred EEE-EeCCCC-----------CCCHHHHHHHHHHh-----CCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHc
Confidence 578 999999 69999999999977 9 9999998885 58999999999999999997777 57
Q ss_pred CCc
Q 024012 143 PGV 145 (274)
Q Consensus 143 ~g~ 145 (274)
+|.
T Consensus 66 ~g~ 68 (90)
T 3p5t_L 66 PKR 68 (90)
T ss_dssp GGS
T ss_pred CCC
Confidence 764
No 238
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.40 E-value=4.1e-13 Score=97.93 Aligned_cols=62 Identities=15% Similarity=0.137 Sum_probs=53.7
Q ss_pred CCCCCceeeeecCCCcceeEEecCCCCCCCCHHHHHHHHHHHHHhhhCCcccceEEEecCCCCCCeEEeeeCCHHHHHHH
Q 024012 60 NSQIGTTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIYHVSWQSNFGFCCELDDECAQEL 139 (274)
Q Consensus 60 ~~~~~s~~lf~vgnl~~~~~~~~~p~~~~~t~~~L~~~F~~~l~~~~G~v~~v~i~~~~~g~srgfgFV~f~~~e~a~~a 139 (274)
..+..+++|| |||||+ ++|+++|+++|+++ |.|.+|+|+.+ ||||||+|.+.++|++|
T Consensus 11 ~~~~~~~~Lf-V~nLp~-----------~vte~dL~~lF~~f-----G~V~~v~i~~~-----kGfaFVeF~~~~~A~~A 68 (105)
T 1sjq_A 11 GSGVPSRVIH-IRKLPI-----------DVTEGEVISLGLPF-----GKVTNLLMLKG-----KNQAFIEMNTEEAANTM 68 (105)
T ss_dssp -CCCCCCEEE-ECSCCT-----------TSCHHHHHHHHHHH-----CCEEEEEEETT-----TTEEEEEESSHHHHHHH
T ss_pred CCCCCCCEEE-EeCCCC-----------CCCHHHHHHHHHhc-----CCEEEEEEEcC-----CCEEEEEECCHHHHHHH
Confidence 4566778899 999999 79999999999988 99999998843 89999999999999777
Q ss_pred HC-CC
Q 024012 140 TG-VP 143 (274)
Q Consensus 140 ~~-~~ 143 (274)
++ ++
T Consensus 69 i~~l~ 73 (105)
T 1sjq_A 69 VNYYT 73 (105)
T ss_dssp HHHHT
T ss_pred HHHhc
Confidence 65 44
No 239
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.40 E-value=2.7e-13 Score=92.85 Aligned_cols=61 Identities=10% Similarity=0.194 Sum_probs=54.7
Q ss_pred eeeecCCCcceeEEecCCCCCCCCHHHHHHHHHHHHHhhhCCcccceEEEe-cCCCCCCeEEeeeCCHHHHHHHHCCCC
Q 024012 67 LLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIY-HVSWQSNFGFCCELDDECAQELTGVPG 144 (274)
Q Consensus 67 ~lf~vgnl~~~~~~~~~p~~~~~t~~~L~~~F~~~l~~~~G~v~~v~i~~~-~~g~srgfgFV~f~~~e~a~~a~~~~g 144 (274)
+|| |+|||. ++|+++|+++|.++ |.|.+++++.+ .+|.++|||||+|.+.++|++|+++++
T Consensus 1 ~l~-v~nLp~-----------~~t~~~l~~~F~~~-----G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~ 62 (75)
T 1iqt_A 1 KIF-VGGLSP-----------DTPEEKIREYFGGF-----GEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKY 62 (75)
T ss_dssp CEE-ESCCCS-----------SCCHHHHHHHHHHH-----SCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTTSS
T ss_pred CEE-EeCCCC-----------CCCHHHHHHHHHhc-----CCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHhCC
Confidence 478 999999 69999999999988 99999998774 568999999999999999999987655
No 240
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.40 E-value=1.3e-12 Score=97.10 Aligned_cols=68 Identities=16% Similarity=0.239 Sum_probs=59.9
Q ss_pred CCCCceeeeecCCCcceeEEecCCCCCCCCHHHHHHHHHHHHHhhhCCcccceEEEe-cCCCCCCeEEeeeCCHHHHHHH
Q 024012 61 SQIGTTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIY-HVSWQSNFGFCCELDDECAQEL 139 (274)
Q Consensus 61 ~~~~s~~lf~vgnl~~~~~~~~~p~~~~~t~~~L~~~F~~~l~~~~G~v~~v~i~~~-~~g~srgfgFV~f~~~e~a~~a 139 (274)
.....++|| |+|||. ++|+++|+++|.++ |.|.+|+++.+ .+|.++|||||+|.+.++|++|
T Consensus 11 ~~~~~~~l~-V~nlp~-----------~~t~~~l~~~F~~~-----G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A 73 (115)
T 2dgo_A 11 DTSNHFHVF-VGDLSP-----------EITTEDIKAAFAPF-----GRISDARVVKDMATGKSKGYGFVSFFNKWDAENA 73 (115)
T ss_dssp CSTTCEEEE-EESCCT-----------TCCHHHHHHHHGGG-----SCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHH
T ss_pred CCCCCcEEE-EeCCCC-----------CCCHHHHHHHHHhc-----CCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHH
Confidence 445678899 999999 69999999999977 99999999886 5899999999999999999777
Q ss_pred HC-CCCc
Q 024012 140 TG-VPGV 145 (274)
Q Consensus 140 ~~-~~g~ 145 (274)
+. |+|.
T Consensus 74 ~~~l~g~ 80 (115)
T 2dgo_A 74 IQQMGGQ 80 (115)
T ss_dssp HHHTTTC
T ss_pred HHHhCCC
Confidence 74 7875
No 241
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.40 E-value=1.4e-13 Score=98.70 Aligned_cols=69 Identities=17% Similarity=0.324 Sum_probs=60.5
Q ss_pred CCCCceeeeecCCCcceeEEecCCCCCCCCHHHHHHHHHHHHHhhhCCcccceEEEecCCCCCCeEEeeeCCHHHHHHHH
Q 024012 61 SQIGTTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIYHVSWQSNFGFCCELDDECAQELT 140 (274)
Q Consensus 61 ~~~~s~~lf~vgnl~~~~~~~~~p~~~~~t~~~L~~~F~~~l~~~~G~v~~v~i~~~~~g~srgfgFV~f~~~e~a~~a~ 140 (274)
....+++|| |+|||. ++|+++|+++|.++ |.|.+++++.+.+|.++|||||+|.+.++|++|+
T Consensus 12 ~~~~~~~l~-v~nlp~-----------~~~~~~l~~~F~~~-----G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~ 74 (95)
T 2ywk_A 12 QEEADRTVF-VGNLEA-----------RVREEILYELFLQA-----GPLTKVTICKDREGKPKSFGFVCFKHPESVSYAI 74 (95)
T ss_dssp CTTGGGEEE-EECCCT-----------TCCHHHHHHHHGGG-----SCEEEEEEEECTTSCEEEEEEEEESSTHHHHHHH
T ss_pred CCCCCCEEE-EECCCC-----------CCCHHHHHHHHHhc-----CCEEEEEEEECCCCCCceEEEEEECCHHHHHHHH
Confidence 334667899 999999 69999999999977 9999999998878999999999999999998877
Q ss_pred C-CCCce
Q 024012 141 G-VPGVL 146 (274)
Q Consensus 141 ~-~~g~~ 146 (274)
+ |+|..
T Consensus 75 ~~l~g~~ 81 (95)
T 2ywk_A 75 ALLNGIR 81 (95)
T ss_dssp HHHTTCE
T ss_pred HHhCCCE
Confidence 6 67653
No 242
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.40 E-value=8.6e-13 Score=100.56 Aligned_cols=65 Identities=12% Similarity=0.029 Sum_probs=55.4
Q ss_pred CCceeeeecCCCcceeEEecCCCCCCCCHHHHHHHHHHHHHhhhCCccc--ceEEEec-CCCCCCeEEeeeCCHHHH-HH
Q 024012 63 IGTTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKD--AQMCIYH-VSWQSNFGFCCELDDECA-QE 138 (274)
Q Consensus 63 ~~s~~lf~vgnl~~~~~~~~~p~~~~~t~~~L~~~F~~~l~~~~G~v~~--v~i~~~~-~g~srgfgFV~f~~~e~a-~~ 138 (274)
..+++|| |||||+ ++|+++|+++|.++ |.|.. |+|+.+. +|++||||||+|.+. +| .+
T Consensus 21 ~~~~~lf-V~nL~~-----------~~te~~L~~~F~~~-----G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~A 82 (131)
T 2m2b_A 21 NANDTII-LRNLNP-----------HSTMDSILGALAPY-----AVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQL 82 (131)
T ss_dssp CCCCEEE-ECSCCT-----------TCCSHHHHHHHGGG-----CCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHH
T ss_pred CCCCEEE-EeCCCC-----------CCCHHHHHHHHHHh-----CCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHH
Confidence 4567899 999999 69999999999977 99966 8888765 899999999999999 88 45
Q ss_pred HHCCCCc
Q 024012 139 LTGVPGV 145 (274)
Q Consensus 139 a~~~~g~ 145 (274)
+..|+|.
T Consensus 83 i~~l~g~ 89 (131)
T 2m2b_A 83 LQILQAL 89 (131)
T ss_dssp HHHHTTC
T ss_pred HHHhcCC
Confidence 5566774
No 243
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.40 E-value=5.2e-13 Score=97.07 Aligned_cols=68 Identities=13% Similarity=0.199 Sum_probs=58.8
Q ss_pred CCCCceeeeecCCCcceeEEecCCCCCCCCHHHHHHHHHHHHHhhhCCcccceEEEe-cCCCCCCeEEeeeCCHHHHHHH
Q 024012 61 SQIGTTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIY-HVSWQSNFGFCCELDDECAQEL 139 (274)
Q Consensus 61 ~~~~s~~lf~vgnl~~~~~~~~~p~~~~~t~~~L~~~F~~~l~~~~G~v~~v~i~~~-~~g~srgfgFV~f~~~e~a~~a 139 (274)
....+++|| |+|||. ++|+++|+++|.++ |.|.+++++.+ .++.++|||||+|.+.++|++|
T Consensus 8 ~~~~~~~l~-v~nLp~-----------~~t~~~l~~~f~~~-----G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A 70 (102)
T 1x5s_A 8 MASDEGKLF-VGGLSF-----------DTNEQSLEQVFSKY-----GQISEVVVVKDRETQRSRGFGFVTFENIDDAKDA 70 (102)
T ss_dssp CCCCCSEEE-EESCCT-----------TCCHHHHHHHHHHH-----SCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHH
T ss_pred CCCCCCEEE-EECCCC-----------CCCHHHHHHHHHhc-----CCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHH
Confidence 344667899 999999 69999999999988 99999998874 5788999999999999999777
Q ss_pred H-CCCCc
Q 024012 140 T-GVPGV 145 (274)
Q Consensus 140 ~-~~~g~ 145 (274)
+ .|+|.
T Consensus 71 ~~~l~g~ 77 (102)
T 1x5s_A 71 MMAMNGK 77 (102)
T ss_dssp HHHHTTC
T ss_pred HHHhCCC
Confidence 6 56764
No 244
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.39 E-value=3.6e-13 Score=98.46 Aligned_cols=67 Identities=15% Similarity=0.203 Sum_probs=58.4
Q ss_pred CCCceeeeecCCCcceeEEecCCCCCCCCHHHHHHHHHHHHHhhhCCcccceEEEec-CCCCCCeEEeeeCCHHHHHHHH
Q 024012 62 QIGTTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIYH-VSWQSNFGFCCELDDECAQELT 140 (274)
Q Consensus 62 ~~~s~~lf~vgnl~~~~~~~~~p~~~~~t~~~L~~~F~~~l~~~~G~v~~v~i~~~~-~g~srgfgFV~f~~~e~a~~a~ 140 (274)
...+++|| |+|||. ++|+++|+++|.++ |.|.+++++.+. ++.++|||||+|.+.++|++|+
T Consensus 12 ~~~~~~l~-V~nlp~-----------~~t~~~l~~~F~~~-----G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~ 74 (105)
T 1x5u_A 12 RNQDATVY-VGGLDE-----------KVSEPLLWELFLQA-----GPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAI 74 (105)
T ss_dssp CCTTTEEE-EECCCT-----------TCCHHHHHHHHHTT-----SCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHH
T ss_pred CCCCCEEE-EeCCCC-----------CCCHHHHHHHHHhc-----CCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHH
Confidence 34567899 999999 69999999999977 999999988754 8999999999999999997777
Q ss_pred C-CCCc
Q 024012 141 G-VPGV 145 (274)
Q Consensus 141 ~-~~g~ 145 (274)
. |+|.
T Consensus 75 ~~l~g~ 80 (105)
T 1x5u_A 75 KIMDMI 80 (105)
T ss_dssp HHSSSC
T ss_pred HHhCCC
Confidence 6 6764
No 245
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.39 E-value=1.9e-13 Score=96.42 Aligned_cols=66 Identities=18% Similarity=0.245 Sum_probs=57.2
Q ss_pred CCceeeeecCCCcceeEEecCCCCCCCCHHHHHHHHHHHHHhhhCCcccceEEEe-cCCCCCCeEEeeeCCHHHHHHHHC
Q 024012 63 IGTTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIY-HVSWQSNFGFCCELDDECAQELTG 141 (274)
Q Consensus 63 ~~s~~lf~vgnl~~~~~~~~~p~~~~~t~~~L~~~F~~~l~~~~G~v~~v~i~~~-~~g~srgfgFV~f~~~e~a~~a~~ 141 (274)
..+.+|| |+|||. ++|+++|+++|.++ |.|.+++++.+ .+|.++|||||+|.+.++|++|+.
T Consensus 4 ~~~~~l~-v~nlp~-----------~~t~~~l~~~F~~~-----G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~ 66 (87)
T 3bs9_A 4 GSHFHVF-VGDLSP-----------EITTAAIAAAFAPF-----GRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQ 66 (87)
T ss_dssp --CEEEE-EESCCT-----------TCCHHHHHHHHGGG-----SCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHH
T ss_pred CCceEEE-EeCCCC-----------CCCHHHHHHHHHhc-----CCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHH
Confidence 4567899 999999 69999999999977 99999999886 589999999999999999977775
Q ss_pred -CCCc
Q 024012 142 -VPGV 145 (274)
Q Consensus 142 -~~g~ 145 (274)
|+|.
T Consensus 67 ~l~g~ 71 (87)
T 3bs9_A 67 QMGGQ 71 (87)
T ss_dssp HHTTC
T ss_pred HcCCC
Confidence 6764
No 246
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.39 E-value=1.3e-13 Score=104.24 Aligned_cols=67 Identities=12% Similarity=0.040 Sum_probs=56.8
Q ss_pred CCCCceeeeecCCCcceeEEecCCCCCCCCHHHHHHHHHHHHHhhhCCcc-cceEEEecCCCCCCeEEeeeCCHHHHHHH
Q 024012 61 SQIGTTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEK-DAQMCIYHVSWQSNFGFCCELDDECAQEL 139 (274)
Q Consensus 61 ~~~~s~~lf~vgnl~~~~~~~~~p~~~~~t~~~L~~~F~~~l~~~~G~v~-~v~i~~~~~g~srgfgFV~f~~~e~a~~a 139 (274)
++..+.+|| |+|||+ ++|+++|+++|.++ +.+. +|+|+.+..|+++|||||+|.++++|++|
T Consensus 38 ~~~~~~~lf-VgnLp~-----------~~te~dL~~~F~~~-----~i~~~~v~i~~d~~GrsrGfaFV~F~~~e~A~~A 100 (126)
T 2hgm_A 38 DSANDGFVR-LRGLPF-----------GCTKEEIVQFFSGL-----EIVPNGITLPVDPEGKITGEAFVQFASQELAEKA 100 (126)
T ss_dssp CSSSCCEEE-EECCCT-----------TCCHHHHHHHTTTS-----CEEEEEEECCCCSSSSSCSEEEEEESSTTHHHHH
T ss_pred CCCCCCEEE-EeCCCC-----------CCCHHHHHHHHhcC-----CceeeEEEEEECCCCCCceEEEEEECCHHHHHHH
Confidence 444567799 999999 79999999999955 5332 88888877799999999999999999999
Q ss_pred HCCCC
Q 024012 140 TGVPG 144 (274)
Q Consensus 140 ~~~~g 144 (274)
+++++
T Consensus 101 l~~~~ 105 (126)
T 2hgm_A 101 LGKHK 105 (126)
T ss_dssp HTTTT
T ss_pred HHHCC
Confidence 98765
No 247
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.39 E-value=3.2e-13 Score=98.79 Aligned_cols=68 Identities=18% Similarity=0.220 Sum_probs=59.6
Q ss_pred CCCCceeeeecCCCcceeEEecCCCCCCCCHHHHHHHHHHHHHhhhCCcccceEEEe-cCCCCCCeEEeeeCCHHHHHHH
Q 024012 61 SQIGTTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIY-HVSWQSNFGFCCELDDECAQEL 139 (274)
Q Consensus 61 ~~~~s~~lf~vgnl~~~~~~~~~p~~~~~t~~~L~~~F~~~l~~~~G~v~~v~i~~~-~~g~srgfgFV~f~~~e~a~~a 139 (274)
.+...++|| |+|||. ++|+++|+++|.++ |.|.+|+++.+ .++.++|||||+|.+.++|++|
T Consensus 12 ~~~~~~~l~-V~nlp~-----------~~t~~~l~~~F~~~-----G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a 74 (105)
T 2dh8_A 12 GADEIGKLF-VGGLDW-----------STTQETLRSYFSQY-----GEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTV 74 (105)
T ss_dssp CSSSSSEEC-CBSCCT-----------TCCHHHHHHHHHTT-----SCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHH
T ss_pred CCCCCCEEE-EeCCCC-----------CCCHHHHHHHHHhc-----CCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHH
Confidence 345677899 999999 69999999999977 99999999885 6799999999999999999888
Q ss_pred HCCCCc
Q 024012 140 TGVPGV 145 (274)
Q Consensus 140 ~~~~g~ 145 (274)
+..+|.
T Consensus 75 ~~~~~~ 80 (105)
T 2dh8_A 75 LASRPH 80 (105)
T ss_dssp HHHCSE
T ss_pred HHhCCC
Confidence 866654
No 248
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.39 E-value=3.9e-13 Score=98.00 Aligned_cols=68 Identities=7% Similarity=0.082 Sum_probs=59.1
Q ss_pred CCCCceeeeecCCCcceeEEecCCCCCCCCHHHHHHHHHHHHHhhhCCcccceEEEe-cCCCCCCeEEeeeCCHHHHHHH
Q 024012 61 SQIGTTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIY-HVSWQSNFGFCCELDDECAQEL 139 (274)
Q Consensus 61 ~~~~s~~lf~vgnl~~~~~~~~~p~~~~~t~~~L~~~F~~~l~~~~G~v~~v~i~~~-~~g~srgfgFV~f~~~e~a~~a 139 (274)
+....++|| |+|||+ ++|+++|+++|.++ | |.+|+++.+ .+|+++|||||+|.+.++|++|
T Consensus 11 ~~~~~~~l~-V~nLp~-----------~~t~~~l~~~F~~~-----g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A 72 (103)
T 2dng_A 11 PTEPPYTAY-VGNLPF-----------NTVQGDIDAIFKDL-----S-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEA 72 (103)
T ss_dssp CSSSCEEEE-EESCCT-----------TCCHHHHHHHTTTS-----C-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHH
T ss_pred CCCCCeEEE-EeCCCC-----------CCCHHHHHHHHHhC-----C-ceEEEEeecCCCCccceEEEEEECCHHHHHHH
Confidence 344678899 999999 69999999999966 8 999998885 4699999999999999999888
Q ss_pred HCCCCce
Q 024012 140 TGVPGVL 146 (274)
Q Consensus 140 ~~~~g~~ 146 (274)
++|+|..
T Consensus 73 ~~l~g~~ 79 (103)
T 2dng_A 73 LTYDGAL 79 (103)
T ss_dssp GGGTTCE
T ss_pred HhhCCCe
Confidence 8888753
No 249
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.39 E-value=7.5e-13 Score=101.74 Aligned_cols=111 Identities=15% Similarity=0.140 Sum_probs=77.0
Q ss_pred eeecChhhHHHHhcCCceeEeccCCCCCccccCCCcCCCCCCCCCCCCCCceeeeecCCCcceeEEecCCCCCCCCHHHH
Q 024012 15 CCNVDEETSRELARLPGVLTVRPDPDYNSVKKDYSCLDIQMSNPWNSQIGTTLLFPLGTTKHWLVRMDKPGVGVVTKAQM 94 (274)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~s~~lf~vgnl~~~~~~~~~p~~~~~t~~~L 94 (274)
|..++++....+..+|.-.......= . .+.....+...+........+++|| |+|||. ++|+++|
T Consensus 16 c~~~~~~~~~~l~~lp~~~~~~c~~C--~-~~~~~~~~~~~~~~~~~~~~~~~l~-v~nlp~-----------~~~~~~l 80 (140)
T 2ku7_A 16 CENLSDEMYEILSNLPESVAYTCVNC--T-ERHVDGGSGGSGGSGGSATTKRVLY-VGGLAE-----------EVDDKVL 80 (140)
T ss_dssp HCCCCHHHHHHHHSSCTTTTCCSSCC--T-TTSCCCCSCSSCSSCSSCSSCCEEE-EECCCT-----------TCCHHHH
T ss_pred ccccCHHHHHHHhhccccceeeCccc--c-ccccCCCCCCCCCCCCCCCCCcEEE-EEeCCC-----------CCCHHHH
Confidence 55678888888888863221111000 0 0111111112222333455678899 999999 6999999
Q ss_pred HHHHHHHHHhhhCCcccceEEEe-cCCCCCCeEEeeeCCHHHHHHHH-CCCCc
Q 024012 95 VDRYAQILTKVLGNEKDAQMCIY-HVSWQSNFGFCCELDDECAQELT-GVPGV 145 (274)
Q Consensus 95 ~~~F~~~l~~~~G~v~~v~i~~~-~~g~srgfgFV~f~~~e~a~~a~-~~~g~ 145 (274)
+++|.++ |.|.+++++.+ .+|+++|||||+|.+.++|++|+ .++|.
T Consensus 81 ~~~f~~~-----G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~ 128 (140)
T 2ku7_A 81 HAAFIPF-----GDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNES 128 (140)
T ss_dssp HHHHGGG-----SCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEE
T ss_pred HHHHHhc-----CCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCC
Confidence 9999977 99999998875 67999999999999999997777 57764
No 250
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.39 E-value=4.3e-13 Score=100.24 Aligned_cols=69 Identities=20% Similarity=0.233 Sum_probs=59.3
Q ss_pred CCCCceeeeecCCCcceeEEecCCCCCCCCHHHHHHHHHHHHHhhhCCcccceEEEe-cCCCCCCeEEeeeCCHHHHHHH
Q 024012 61 SQIGTTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIY-HVSWQSNFGFCCELDDECAQEL 139 (274)
Q Consensus 61 ~~~~s~~lf~vgnl~~~~~~~~~p~~~~~t~~~L~~~F~~~l~~~~G~v~~v~i~~~-~~g~srgfgFV~f~~~e~a~~a 139 (274)
....+++|| |+|||. ++|+++|+++|.++ |.|.+++++.+ .+|.++|||||+|.+.++|++|
T Consensus 36 ~~~~~~~l~-V~nlp~-----------~~t~~~l~~~F~~~-----G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A 98 (118)
T 2khc_A 36 EGPEGCNLF-IYHLPQ-----------EFTDTDLASTFLPF-----GNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVA 98 (118)
T ss_dssp CCCCSEEEE-EECSCT-----------TCCHHHHHHHTTTS-----CEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHH
T ss_pred CCCCCCEEE-EeCCCC-----------CCCHHHHHHHHHhc-----CCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHH
Confidence 345668899 999999 69999999999977 99999998875 6789999999999999999777
Q ss_pred HC-CCCce
Q 024012 140 TG-VPGVL 146 (274)
Q Consensus 140 ~~-~~g~~ 146 (274)
++ |+|..
T Consensus 99 ~~~l~g~~ 106 (118)
T 2khc_A 99 IKAMNGFQ 106 (118)
T ss_dssp HHHCCCCE
T ss_pred HHHcCCCE
Confidence 65 77753
No 251
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.39 E-value=5.7e-13 Score=94.82 Aligned_cols=68 Identities=12% Similarity=0.027 Sum_probs=58.8
Q ss_pred CCCCceeeeecCCCcceeEEecCCCCCCCCHHHHHHHHHHHHHhhhCCcccceEEEecCCCCCCeEEeeeCCHHHHHHHH
Q 024012 61 SQIGTTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIYHVSWQSNFGFCCELDDECAQELT 140 (274)
Q Consensus 61 ~~~~s~~lf~vgnl~~~~~~~~~p~~~~~t~~~L~~~F~~~l~~~~G~v~~v~i~~~~~g~srgfgFV~f~~~e~a~~a~ 140 (274)
+.....+|| |+|||+ ++|+++|+++|. .+ .|.+++++.+.+|+++|||||+|.+.++|++|+
T Consensus 6 ~~~~~~~l~-v~nLp~-----------~~t~~~l~~~F~-----~~-~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~ 67 (91)
T 2dgw_A 6 SGTTCHTVK-LRGAPF-----------NVTEKNVMEFLA-----PL-KPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQAL 67 (91)
T ss_dssp CCCCCCEEE-EECCCS-----------SCCHHHHHHHHT-----TS-CCSEEEEEECTTSCEEEEEEEECSSHHHHHHHH
T ss_pred CCCCccEEE-EECCCC-----------CCCHHHHHHHHh-----hC-CceEEEEEECCCCCCceEEEEEECCHHHHHHHH
Confidence 334567899 999999 699999999999 44 688999998888999999999999999998888
Q ss_pred CCCCce
Q 024012 141 GVPGVL 146 (274)
Q Consensus 141 ~~~g~~ 146 (274)
.++|..
T Consensus 68 ~~~g~~ 73 (91)
T 2dgw_A 68 KCNREY 73 (91)
T ss_dssp HSCSEE
T ss_pred HhCCce
Confidence 788753
No 252
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.38 E-value=3e-13 Score=97.00 Aligned_cols=66 Identities=18% Similarity=0.361 Sum_probs=57.9
Q ss_pred CCceeeeecCCCcceeEEecCCCCCCCCHHHHHHHHHHHHHhhhCCcccceEEEe-cCCCCCCeEEeeeCCHHHHHHHHC
Q 024012 63 IGTTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIY-HVSWQSNFGFCCELDDECAQELTG 141 (274)
Q Consensus 63 ~~s~~lf~vgnl~~~~~~~~~p~~~~~t~~~L~~~F~~~l~~~~G~v~~v~i~~~-~~g~srgfgFV~f~~~e~a~~a~~ 141 (274)
..+++|| |+|||. ++|+++|+++|.++ |.|.+++++.+ .++.++|||||+|.+.++|++|++
T Consensus 3 ~~~~~l~-v~nlp~-----------~~t~~~l~~~f~~~-----G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~ 65 (95)
T 2dnz_A 3 SGSSGLY-VGSLHF-----------NITEDMLRGIFEPF-----GKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALE 65 (95)
T ss_dssp SCCCEEE-EESCCT-----------TCCHHHHHHHHTTT-----SCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHH
T ss_pred CCCcEEE-EeCCCC-----------CCCHHHHHHHHHhc-----CCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHH
Confidence 4567899 999999 69999999999977 99999998875 569999999999999999977776
Q ss_pred -CCCc
Q 024012 142 -VPGV 145 (274)
Q Consensus 142 -~~g~ 145 (274)
|+|.
T Consensus 66 ~l~g~ 70 (95)
T 2dnz_A 66 QLNGF 70 (95)
T ss_dssp HHTTC
T ss_pred HhCCC
Confidence 6764
No 253
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.38 E-value=3.2e-13 Score=98.11 Aligned_cols=66 Identities=14% Similarity=0.138 Sum_probs=56.9
Q ss_pred CceeeeecCCCcceeEEecCCCCCCCCHHHHHHHHHHHHHhhhCCcccceEEEecCCCCCCeEEeeeCCHHHHHHHHCCC
Q 024012 64 GTTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIYHVSWQSNFGFCCELDDECAQELTGVP 143 (274)
Q Consensus 64 ~s~~lf~vgnl~~~~~~~~~p~~~~~t~~~L~~~F~~~l~~~~G~v~~v~i~~~~~g~srgfgFV~f~~~e~a~~a~~~~ 143 (274)
.+.+|| |||||. ++|+++|+++|.++ |.|.+..+....+|.++|||||+|.+.++|++|++|+
T Consensus 16 ~~~~l~-V~nLp~-----------~~t~~~l~~~F~~~-----G~v~~~~~~~~~~g~~~g~afV~f~~~~~a~~A~~l~ 78 (101)
T 1fj7_A 16 TPFNLF-IGNLNP-----------NKSVAELKVAISEL-----FAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKALELT 78 (101)
T ss_dssp CSEEEE-EECCCT-----------TSCHHHHHHHHHHH-----HHHHTCCCCEEEEETTTTEEEEEESSHHHHHHHHHGG
T ss_pred CCCEEE-EeCCCC-----------CCCHHHHHHHHHHh-----CCcceEEEecCCCCCcCcEEEEEECCHHHHHHHHhcC
Confidence 467899 999999 69999999999988 9888844555678999999999999999998888787
Q ss_pred Cce
Q 024012 144 GVL 146 (274)
Q Consensus 144 g~~ 146 (274)
|..
T Consensus 79 g~~ 81 (101)
T 1fj7_A 79 GLK 81 (101)
T ss_dssp GCC
T ss_pred CcE
Confidence 653
No 254
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.38 E-value=2.2e-13 Score=95.65 Aligned_cols=67 Identities=15% Similarity=0.145 Sum_probs=58.5
Q ss_pred CCceeeeecCCCcceeEEecCCCCCCCCHHHHHHHHHHHHHhhhCCcccceEEEe-cCCCCCCeEEeeeCCHHHHHHHH-
Q 024012 63 IGTTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIY-HVSWQSNFGFCCELDDECAQELT- 140 (274)
Q Consensus 63 ~~s~~lf~vgnl~~~~~~~~~p~~~~~t~~~L~~~F~~~l~~~~G~v~~v~i~~~-~~g~srgfgFV~f~~~e~a~~a~- 140 (274)
..+++|| |+|||. ++|+++|+++|.++ |.|.+++++.+ .+|.++|||||+|.+.++|++|+
T Consensus 5 ~~~~~l~-V~nl~~-----------~~~~~~l~~~f~~~-----G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~ 67 (85)
T 3mdf_A 5 TTKRVLY-VGGLAE-----------EVDDKVLHAAFIPF-----GDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAID 67 (85)
T ss_dssp CCSSEEE-EECCCT-----------TCCHHHHHHHHGGG-----SCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHH
T ss_pred CCCCEEE-EECCCC-----------CCCHHHHHHHHhcc-----CCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHH
Confidence 4567899 999999 69999999999977 99999998775 78889999999999999997777
Q ss_pred CCCCce
Q 024012 141 GVPGVL 146 (274)
Q Consensus 141 ~~~g~~ 146 (274)
.|+|..
T Consensus 68 ~l~g~~ 73 (85)
T 3mdf_A 68 NMNESE 73 (85)
T ss_dssp HHTTCE
T ss_pred HhCCCE
Confidence 567753
No 255
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.38 E-value=3e-13 Score=98.35 Aligned_cols=68 Identities=15% Similarity=0.149 Sum_probs=58.8
Q ss_pred CCCCceeeeecCCCcceeEEecCCCCCCCCHHHHHHHHHHHHHhhhCCcccceEEEe-cCCCCCCeEEeeeCCHHHHHHH
Q 024012 61 SQIGTTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIY-HVSWQSNFGFCCELDDECAQEL 139 (274)
Q Consensus 61 ~~~~s~~lf~vgnl~~~~~~~~~p~~~~~t~~~L~~~F~~~l~~~~G~v~~v~i~~~-~~g~srgfgFV~f~~~e~a~~a 139 (274)
....+++|| |+|||. ++|+++|+++|.++ |.|.+++++.+ .++.++|||||+|.+.++|++|
T Consensus 8 ~~~~~~~l~-V~nLp~-----------~~t~~~l~~~f~~~-----G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A 70 (102)
T 2cqb_A 8 MATTKRVLY-VGGLAE-----------EVDDKVLHAAFIPF-----GDITDIQIPLDYETEKHRGFAFVEFELAEDAAAA 70 (102)
T ss_dssp SCCCCSCEE-EESCCS-----------SCCHHHHHHHHTTT-----SCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHH
T ss_pred cCCCCCEEE-EeCCCC-----------CCCHHHHHHHhhcc-----CCEEEEEEEecCCCCCcceEEEEEECCHHHHHHH
Confidence 344667899 999999 69999999999977 99999998775 6789999999999999999777
Q ss_pred H-CCCCc
Q 024012 140 T-GVPGV 145 (274)
Q Consensus 140 ~-~~~g~ 145 (274)
+ .|+|.
T Consensus 71 ~~~l~g~ 77 (102)
T 2cqb_A 71 IDNMNES 77 (102)
T ss_dssp HHHHTTE
T ss_pred HHHhCCC
Confidence 7 46764
No 256
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.38 E-value=7.3e-13 Score=98.30 Aligned_cols=66 Identities=11% Similarity=-0.002 Sum_probs=58.9
Q ss_pred CCceeeeecCCCcceeEEecCCCCCCCCHHHHHHHHHHHHHhhhCCcccceEEEecCCCCCCeEEeeeCCHHHHHHHHC-
Q 024012 63 IGTTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIYHVSWQSNFGFCCELDDECAQELTG- 141 (274)
Q Consensus 63 ~~s~~lf~vgnl~~~~~~~~~p~~~~~t~~~L~~~F~~~l~~~~G~v~~v~i~~~~~g~srgfgFV~f~~~e~a~~a~~- 141 (274)
..+++|| |+|||. ++|+++|+++|.++ |.|.+++++.+.+|.++|||||+|.+.++|++|+.
T Consensus 13 ~~~~~l~-V~nlp~-----------~~~~~~l~~~f~~~-----G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~ 75 (114)
T 2do0_A 13 RLGSTVF-VANLDY-----------KVGWKKLKEVFSMA-----GVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISM 75 (114)
T ss_dssp CCCSCEE-EESCCT-----------TCCHHHHHHHHTTT-----SCEEEEEEEECTTCSEEEEEEEEESSHHHHHHHHHH
T ss_pred CCCCEEE-EeCCCC-----------CCCHHHHHHHHHhc-----CCeEEEEEEECCCCCeeeEEEEEECCHHHHHHHHHH
Confidence 3467899 999999 69999999999977 99999999988889999999999999999977766
Q ss_pred CCCc
Q 024012 142 VPGV 145 (274)
Q Consensus 142 ~~g~ 145 (274)
|+|.
T Consensus 76 l~g~ 79 (114)
T 2do0_A 76 FNGQ 79 (114)
T ss_dssp HTTC
T ss_pred hCCC
Confidence 6775
No 257
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.38 E-value=5.6e-13 Score=96.20 Aligned_cols=67 Identities=7% Similarity=0.007 Sum_probs=58.0
Q ss_pred CCCceeeeecCCCcceeEEecCCCCCCCCHHHHHHHHHHHHHhhhCCcccceEEE-ecCCCCCCeEEeeeCCHHHHHHHH
Q 024012 62 QIGTTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCI-YHVSWQSNFGFCCELDDECAQELT 140 (274)
Q Consensus 62 ~~~s~~lf~vgnl~~~~~~~~~p~~~~~t~~~L~~~F~~~l~~~~G~v~~v~i~~-~~~g~srgfgFV~f~~~e~a~~a~ 140 (274)
....++|| |+|||+ ++|+++|+++|.++ |.|.+++++. ..+|+++|||||+|.+.++|++|+
T Consensus 12 ~~~~~~l~-v~nLp~-----------~~t~~~l~~~F~~~-----G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai 74 (98)
T 2cqp_A 12 KPGPTIIK-VQNMPF-----------TVSIDEILDFFYGY-----QVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAV 74 (98)
T ss_dssp CCSSEEEE-EESCCT-----------TCCHHHHHHHTTTS-----CCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHH
T ss_pred CCCCCEEE-EeCCCC-----------CCCHHHHHHHHHHc-----CCccceEEEEECCCCCeeeEEEEEECCHHHHHHHH
Confidence 34567899 999999 69999999999977 9999988776 578899999999999999997776
Q ss_pred -CCCCc
Q 024012 141 -GVPGV 145 (274)
Q Consensus 141 -~~~g~ 145 (274)
.|+|.
T Consensus 75 ~~l~g~ 80 (98)
T 2cqp_A 75 IDLNDR 80 (98)
T ss_dssp HHTTTC
T ss_pred HHhCCC
Confidence 67775
No 258
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.38 E-value=8.6e-14 Score=101.08 Aligned_cols=68 Identities=12% Similarity=0.061 Sum_probs=56.9
Q ss_pred CCCCceeeeecCCCcceeEEecCCCCCCCCHHHHHHHHHHHHHhhhCCcccceEEEec--CCCCCCeEEeeeCCHHHHHH
Q 024012 61 SQIGTTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIYH--VSWQSNFGFCCELDDECAQE 138 (274)
Q Consensus 61 ~~~~s~~lf~vgnl~~~~~~~~~p~~~~~t~~~L~~~F~~~l~~~~G~v~~v~i~~~~--~g~srgfgFV~f~~~e~a~~ 138 (274)
.....++|| |||||+ ++|+++|+++|.++ | |.+++|+.+. +|+++|||||+|.+.++|++
T Consensus 15 ~~~~~~~l~-V~nLp~-----------~~t~~~l~~~F~~~-----G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~ 76 (100)
T 2j76_E 15 PKSPPYTAF-LGNLPY-----------DVTEESIKEFFRGL-----N-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLS 76 (100)
T ss_dssp -----CEEE-ESCCSS-----------CCSSSHHHHHSCSS-----C-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHH
T ss_pred CCCCCcEEE-EeCCCC-----------CCCHHHHHHHHHhc-----C-CeEEEEEecCCcCCccCeEEEEEECCHHHHHH
Confidence 345678899 999999 69999999999977 9 9999988764 89999999999999999988
Q ss_pred HHCCCCce
Q 024012 139 LTGVPGVL 146 (274)
Q Consensus 139 a~~~~g~~ 146 (274)
|+.|+|..
T Consensus 77 Ai~l~g~~ 84 (100)
T 2j76_E 77 ALSLNEES 84 (100)
T ss_dssp HHHTTTCC
T ss_pred HHhcCCCE
Confidence 88888753
No 259
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.38 E-value=2.4e-13 Score=94.99 Aligned_cols=65 Identities=15% Similarity=0.195 Sum_probs=57.1
Q ss_pred ceeeeecCCCcceeEEecCCCCCCCCHHHHHHHHHHHHHhhhCCcccceEEEe-cCCCCCCeEEeeeCCHHHHHHHHC-C
Q 024012 65 TTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIY-HVSWQSNFGFCCELDDECAQELTG-V 142 (274)
Q Consensus 65 s~~lf~vgnl~~~~~~~~~p~~~~~t~~~L~~~F~~~l~~~~G~v~~v~i~~~-~~g~srgfgFV~f~~~e~a~~a~~-~ 142 (274)
+.+|| |+|||. ++|+++|+++|.++ |.|.+++++.+ .+|.++|||||+|.+.++|++|+. |
T Consensus 1 t~~l~-V~nlp~-----------~~t~~~l~~~f~~~-----G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l 63 (83)
T 3md1_A 1 TFNLF-VGDLNV-----------NVDDETLRNAFKDF-----PSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSM 63 (83)
T ss_dssp CEEEE-EECCCT-----------TCCHHHHHHHHTTS-----TTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHH
T ss_pred CeEEE-EeCCCC-----------CCCHHHHHHHHHhc-----CCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHh
Confidence 35788 999999 69999999999976 99999998875 679999999999999999977776 6
Q ss_pred CCce
Q 024012 143 PGVL 146 (274)
Q Consensus 143 ~g~~ 146 (274)
+|..
T Consensus 64 ~g~~ 67 (83)
T 3md1_A 64 QGQD 67 (83)
T ss_dssp TTCE
T ss_pred cCCe
Confidence 7753
No 260
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.38 E-value=7e-13 Score=98.63 Aligned_cols=66 Identities=18% Similarity=0.237 Sum_probs=58.2
Q ss_pred CCceeeeecCCCcceeEEecCCCCCCCCHHHHHHHHHHHHHhhhCCcccceEEEec-CCCCCCeEEeeeCCHHHHHHHH-
Q 024012 63 IGTTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIYH-VSWQSNFGFCCELDDECAQELT- 140 (274)
Q Consensus 63 ~~s~~lf~vgnl~~~~~~~~~p~~~~~t~~~L~~~F~~~l~~~~G~v~~v~i~~~~-~g~srgfgFV~f~~~e~a~~a~- 140 (274)
..+++|| |+|||. ++|+++|+++|.++ |.|.+++|+.+. ++.++|||||+|.+.++|++|+
T Consensus 23 ~~~~~l~-V~nLp~-----------~~t~~~l~~~F~~~-----G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~ 85 (115)
T 2cpz_A 23 PEGANLF-IYHLPQ-----------EFGDQDLLQMFMPF-----GNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQ 85 (115)
T ss_dssp STTCCEE-EESCCS-----------SCCHHHHHHHHGGG-----SCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHH
T ss_pred CCCcEEE-EeCCCC-----------CCCHHHHHHHHHhc-----CCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHH
Confidence 4567899 999999 69999999999977 999999998864 8999999999999999997777
Q ss_pred CCCCc
Q 024012 141 GVPGV 145 (274)
Q Consensus 141 ~~~g~ 145 (274)
.|+|.
T Consensus 86 ~l~g~ 90 (115)
T 2cpz_A 86 SMNGF 90 (115)
T ss_dssp HHTTC
T ss_pred HcCCC
Confidence 56764
No 261
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.38 E-value=3.3e-13 Score=95.52 Aligned_cols=66 Identities=11% Similarity=0.168 Sum_probs=58.8
Q ss_pred CceeeeecCCCcceeEEecCCCCCCCCHHHHHHHHHHHHHhhhCCcccceEEEe-cCCCCCCeEEeeeCCHHHHHHHHCC
Q 024012 64 GTTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIY-HVSWQSNFGFCCELDDECAQELTGV 142 (274)
Q Consensus 64 ~s~~lf~vgnl~~~~~~~~~p~~~~~t~~~L~~~F~~~l~~~~G~v~~v~i~~~-~~g~srgfgFV~f~~~e~a~~a~~~ 142 (274)
.+++|| |+|||. ++|+++|+++|.++ |.|.+++++.+ .+|.++|||||+|.+.++|++|+.+
T Consensus 5 ~~~~l~-V~nlp~-----------~~t~~~l~~~F~~~-----G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~ 67 (89)
T 3ucg_A 5 DARSIY-VGNVDY-----------GATAEELEAHFHGC-----GSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSLAL 67 (89)
T ss_dssp HHTEEE-EESCCT-----------TCCHHHHHHHHGGG-----CCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHGGG
T ss_pred cCCEEE-EeCCCC-----------CCCHHHHHHHHHhC-----CCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHhc
Confidence 356799 999999 69999999999977 99999999885 5899999999999999999888888
Q ss_pred CCce
Q 024012 143 PGVL 146 (274)
Q Consensus 143 ~g~~ 146 (274)
+|..
T Consensus 68 ~g~~ 71 (89)
T 3ucg_A 68 DESL 71 (89)
T ss_dssp TTCE
T ss_pred CCCE
Confidence 8754
No 262
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.38 E-value=4.5e-13 Score=96.05 Aligned_cols=68 Identities=13% Similarity=0.105 Sum_probs=58.8
Q ss_pred CCCCceeeeecCCCcceeEEecCCCCCCCCHHHHHHHHHHHHHhhhCCcccceEEEe-cCCCCCCeEEeeeCCHHHHHHH
Q 024012 61 SQIGTTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIY-HVSWQSNFGFCCELDDECAQEL 139 (274)
Q Consensus 61 ~~~~s~~lf~vgnl~~~~~~~~~p~~~~~t~~~L~~~F~~~l~~~~G~v~~v~i~~~-~~g~srgfgFV~f~~~e~a~~a 139 (274)
.+..+++|| |+|||. ++|+++|+++|.++ |.|.+++++.+ .++.++|||||+|.+.++|++|
T Consensus 11 ~~~~~~~l~-v~nlp~-----------~~t~~~l~~~f~~~-----G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A 73 (95)
T 2cqc_A 11 NPDPNCCLG-VFGLSL-----------YTTERDLREVFSKY-----GPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEA 73 (95)
T ss_dssp SCCGGGCEE-EESCCS-----------SCCHHHHHHHHHTT-----SCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHH
T ss_pred CCCCCCEEE-EECCCC-----------CCCHHHHHHHHHhc-----CCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHH
Confidence 445677899 999999 69999999999977 99999998875 5688999999999999999777
Q ss_pred HC-CCCc
Q 024012 140 TG-VPGV 145 (274)
Q Consensus 140 ~~-~~g~ 145 (274)
+. |+|.
T Consensus 74 ~~~l~g~ 80 (95)
T 2cqc_A 74 KERANGM 80 (95)
T ss_dssp HHHHTTE
T ss_pred HHHhCCC
Confidence 76 6764
No 263
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.38 E-value=1.3e-13 Score=100.16 Aligned_cols=66 Identities=12% Similarity=0.089 Sum_probs=56.9
Q ss_pred CceeeeecCCCcc------eeEEecCCCCCCCCHHHHHHHHHHHHHhhhCCcccceEEEe-cCCCCCCeEEeeeCCHHHH
Q 024012 64 GTTLLFPLGTTKH------WLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIY-HVSWQSNFGFCCELDDECA 136 (274)
Q Consensus 64 ~s~~lf~vgnl~~------~~~~~~~p~~~~~t~~~L~~~F~~~l~~~~G~v~~v~i~~~-~~g~srgfgFV~f~~~e~a 136 (274)
.+++|| |+|||+ . +++++|+++|+++ |.|.+|+|+.+ .+|+++|||||+|.+.++|
T Consensus 5 ~~~~vf-V~nLp~v~~~~~~-----------~~~~~L~~~F~~~-----G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A 67 (100)
T 3ns6_A 5 SDQYIV-VNGAPVIPSAKVP-----------VLKKALTSLFSKA-----GKVVNMEFPIDEATGKTKGFLFVECGSMNDA 67 (100)
T ss_dssp GGGEEE-EESCCCCBGGGHH-----------HHHHHHHHHHHTT-----SCEEEEECCEETTTTEECSEEEEEESSHHHH
T ss_pred cCcEEE-EeCCCcCChHHHH-----------HHHHHHHHHHHhc-----CCEeEEEEEEcCCCCccceEEEEEECCHHHH
Confidence 357799 999998 5 8999999999977 99999998875 4599999999999999999
Q ss_pred HHHH-CCCCce
Q 024012 137 QELT-GVPGVL 146 (274)
Q Consensus 137 ~~a~-~~~g~~ 146 (274)
++|+ .|+|..
T Consensus 68 ~~Ai~~lng~~ 78 (100)
T 3ns6_A 68 KKIIKSFHGKR 78 (100)
T ss_dssp HHHHHHHTTCB
T ss_pred HHHHHHhCCcc
Confidence 7777 467753
No 264
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.37 E-value=4e-13 Score=96.15 Aligned_cols=69 Identities=12% Similarity=0.159 Sum_probs=59.1
Q ss_pred CCCCceeeeecCCCcceeEEecCCCCCCCCHHHHHHHHHHHHHhhhCCcccceEEEe-cCCCCCCeEEeeeCCHHHHHHH
Q 024012 61 SQIGTTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIY-HVSWQSNFGFCCELDDECAQEL 139 (274)
Q Consensus 61 ~~~~s~~lf~vgnl~~~~~~~~~p~~~~~t~~~L~~~F~~~l~~~~G~v~~v~i~~~-~~g~srgfgFV~f~~~e~a~~a 139 (274)
.++.+++|| |+|||. ++|+++|+++|.++ |.|.+++++.+ .++.++|||||+|.+.++|++|
T Consensus 12 ~~~~~~~l~-V~nlp~-----------~~t~~~l~~~f~~~-----G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A 74 (94)
T 2e5h_A 12 LAPSKSTVY-VSNLPF-----------SLTNNDLYRIFSKY-----GKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNC 74 (94)
T ss_dssp CCCCTTSEE-EESCCT-----------TSCHHHHHHHTTTT-----SCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHH
T ss_pred CCCCCCEEE-EECCCC-----------CCCHHHHHHHHHhc-----CCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHH
Confidence 445667899 999999 69999999999977 99999998874 4588999999999999999777
Q ss_pred H-CCCCce
Q 024012 140 T-GVPGVL 146 (274)
Q Consensus 140 ~-~~~g~~ 146 (274)
+ .|+|..
T Consensus 75 ~~~l~g~~ 82 (94)
T 2e5h_A 75 TRAINNKQ 82 (94)
T ss_dssp HHHTTTEE
T ss_pred HHHcCCCe
Confidence 7 577753
No 265
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.37 E-value=1.2e-12 Score=95.36 Aligned_cols=67 Identities=19% Similarity=0.262 Sum_probs=57.3
Q ss_pred CCCCceeeeecCCCcceeEEecCCCCCCCCHHHHHHHHHHHHHhhhCCcccceEEEecCCCCCCeEEeeeCCHHHHHHHH
Q 024012 61 SQIGTTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIYHVSWQSNFGFCCELDDECAQELT 140 (274)
Q Consensus 61 ~~~~s~~lf~vgnl~~~~~~~~~p~~~~~t~~~L~~~F~~~l~~~~G~v~~v~i~~~~~g~srgfgFV~f~~~e~a~~a~ 140 (274)
....+++|| |+|||. ++|+++|+++|.++ |.|.+|+++.+. +.++|||||+|.+.++|++|+
T Consensus 11 ~~~~~~~l~-V~nlp~-----------~~t~~~l~~~F~~~-----G~i~~v~i~~~~-~~~~g~afV~f~~~~~a~~A~ 72 (103)
T 2cqi_A 11 DDGQPRTLY-VGNLSR-----------DVTEVLILQLFSQI-----GPCKSCKMITEH-TSNDPYCFVEFYEHRDAAAAL 72 (103)
T ss_dssp CSCCCCEEE-EESCCT-----------TCCHHHHHHHHHHH-----SCEEEEEEECCC-CSSCCEEEEEESSHHHHHHHH
T ss_pred CCCCCCEEE-EeCCCc-----------cCCHHHHHHHHHhc-----CCEeEEEEEecC-CCCCCEEEEEECCHHHHHHHH
Confidence 334567899 999999 69999999999988 999999998763 447999999999999997777
Q ss_pred C-CCCc
Q 024012 141 G-VPGV 145 (274)
Q Consensus 141 ~-~~g~ 145 (274)
. |+|.
T Consensus 73 ~~l~g~ 78 (103)
T 2cqi_A 73 AAMNGR 78 (103)
T ss_dssp HHHTTE
T ss_pred HHhCCC
Confidence 6 7775
No 266
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.37 E-value=1.6e-13 Score=101.95 Aligned_cols=67 Identities=9% Similarity=0.132 Sum_probs=58.7
Q ss_pred CCceeeeecCCCcceeEEecCCCCCCCCHHHHHHHHHHHHHhhhCCcccceEEEe-cCCCCCCeEEeeeCCHHHHHHHHC
Q 024012 63 IGTTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIY-HVSWQSNFGFCCELDDECAQELTG 141 (274)
Q Consensus 63 ~~s~~lf~vgnl~~~~~~~~~p~~~~~t~~~L~~~F~~~l~~~~G~v~~v~i~~~-~~g~srgfgFV~f~~~e~a~~a~~ 141 (274)
..+++|| |+|||. ++|+++|+++|.++ |.|.+|+++.+ .+|.++|||||+|.+.++|++|+.
T Consensus 23 ~~~~~l~-V~nlp~-----------~~t~~~l~~~F~~~-----G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~ 85 (114)
T 2cq4_A 23 RDARTVF-CMQLAA-----------RIRPRDLEDFFSAV-----GKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAIG 85 (114)
T ss_dssp HHHTEEE-EESCCT-----------TCCHHHHHHHHTTT-----SCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHHH
T ss_pred CCCCEEE-EeCCCC-----------CCCHHHHHHHHHhC-----CCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHHH
Confidence 4567899 999999 69999999999977 99999998874 458999999999999999988888
Q ss_pred CCCce
Q 024012 142 VPGVL 146 (274)
Q Consensus 142 ~~g~~ 146 (274)
|+|..
T Consensus 86 l~g~~ 90 (114)
T 2cq4_A 86 LTGQR 90 (114)
T ss_dssp HTTEE
T ss_pred cCCCE
Confidence 78753
No 267
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.37 E-value=2.2e-13 Score=100.53 Aligned_cols=67 Identities=15% Similarity=0.239 Sum_probs=55.5
Q ss_pred CCCCceeeeecCCCcceeEEecCCCCCCCCHHHHHHHHHHHHHhhhCCcccceEEEe-cCCCCCCeEEeeeCCHHHHHHH
Q 024012 61 SQIGTTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIY-HVSWQSNFGFCCELDDECAQEL 139 (274)
Q Consensus 61 ~~~~s~~lf~vgnl~~~~~~~~~p~~~~~t~~~L~~~F~~~l~~~~G~v~~v~i~~~-~~g~srgfgFV~f~~~e~a~~a 139 (274)
.+..+++|| |||||. ++|+++|+++|.++ |.|.+|+++.+ .+|.++|||||+|.+.++|++|
T Consensus 21 ~~~~~~~lf-V~nLp~-----------~~te~~L~~~F~~~-----G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~A 83 (109)
T 2rs2_A 21 MGSSGCKMF-IGGLSW-----------QTTQEGLREYFGQF-----GEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKV 83 (109)
T ss_dssp -----CCEE-EESCCT-----------TCCHHHHHHHHTTT-----SCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHH
T ss_pred cCCCCCEEE-EeCCCC-----------CCCHHHHHHHHHcc-----CCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHH
Confidence 344567899 999999 69999999999977 99999998875 5699999999999999999888
Q ss_pred HCCCC
Q 024012 140 TGVPG 144 (274)
Q Consensus 140 ~~~~g 144 (274)
+...+
T Consensus 84 i~~~~ 88 (109)
T 2rs2_A 84 LAQSR 88 (109)
T ss_dssp HHSSC
T ss_pred HHHCC
Confidence 76544
No 268
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.37 E-value=4.2e-13 Score=98.00 Aligned_cols=67 Identities=12% Similarity=0.058 Sum_probs=58.1
Q ss_pred CCCceeeeecCCCcceeEEecCCCCCCCCHHHHHHHHHHHHHhhhCCcccceEEEec-C-CCCCCeEEeeeCCHHHHHHH
Q 024012 62 QIGTTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIYH-V-SWQSNFGFCCELDDECAQEL 139 (274)
Q Consensus 62 ~~~s~~lf~vgnl~~~~~~~~~p~~~~~t~~~L~~~F~~~l~~~~G~v~~v~i~~~~-~-g~srgfgFV~f~~~e~a~~a 139 (274)
.....+|| |+|||+ ++|+++|+++|.++ | |.+|+|+.+. + |+++|||||+|.+.++|++|
T Consensus 12 ~~~~~~l~-V~nlp~-----------~~t~~~l~~~F~~~-----G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A 73 (104)
T 1wi8_A 12 KSPPYTAF-LGNLPY-----------DVTEESIKEFFRGL-----N-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSA 73 (104)
T ss_dssp SSSCEEEE-EESCCS-----------SCCHHHHHHHTTTS-----C-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHH
T ss_pred CCCCCEEE-EeCCCC-----------cCCHHHHHHHHHHC-----C-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHH
Confidence 34567899 999999 69999999999977 9 9999988754 3 89999999999999999888
Q ss_pred HCCCCce
Q 024012 140 TGVPGVL 146 (274)
Q Consensus 140 ~~~~g~~ 146 (274)
+.|+|..
T Consensus 74 ~~l~g~~ 80 (104)
T 1wi8_A 74 LSLNEES 80 (104)
T ss_dssp HGGGTCE
T ss_pred HhcCCCE
Confidence 8888753
No 269
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.37 E-value=4.9e-13 Score=98.11 Aligned_cols=67 Identities=15% Similarity=0.044 Sum_probs=59.6
Q ss_pred CCceeeeecCCCcceeEEecCCCCCCCCHHHHHHHHHHHHHhhhCCcccceEEEecCCCCCCeEEeeeCCHHHHHHHHC-
Q 024012 63 IGTTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIYHVSWQSNFGFCCELDDECAQELTG- 141 (274)
Q Consensus 63 ~~s~~lf~vgnl~~~~~~~~~p~~~~~t~~~L~~~F~~~l~~~~G~v~~v~i~~~~~g~srgfgFV~f~~~e~a~~a~~- 141 (274)
..+++|| |+|||. .+|+++|+++|.++ |.|.+++++.+.+|.++|||||+|.+.++|++|+.
T Consensus 27 ~~~~~l~-V~nlp~-----------~~t~~~l~~~F~~~-----G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~ 89 (107)
T 3ulh_A 27 ETGGKLL-VSNLDF-----------GVSDADIQELFAEF-----GTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQ 89 (107)
T ss_dssp CCSEEEE-EESCCT-----------TCCHHHHHHHHHTT-----SCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHH
T ss_pred CCCCEEE-EeCCCC-----------CCCHHHHHHHHHhc-----CCeEEEEEEECCCCCcceEEEEEECCHHHHHHHHHH
Confidence 4567899 999999 69999999999977 99999999998899999999999999999977776
Q ss_pred CCCce
Q 024012 142 VPGVL 146 (274)
Q Consensus 142 ~~g~~ 146 (274)
|+|..
T Consensus 90 l~g~~ 94 (107)
T 3ulh_A 90 YNGVP 94 (107)
T ss_dssp HTTCE
T ss_pred hCCCE
Confidence 67753
No 270
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.37 E-value=5.7e-13 Score=94.94 Aligned_cols=65 Identities=15% Similarity=0.176 Sum_probs=57.1
Q ss_pred CCceeeeecCCCcceeEEecCCCCCCCCHHHHHHHHHHHHHhhhCCcccceEEEecCCCCCCeEEeeeCCHHHHHHHHC-
Q 024012 63 IGTTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIYHVSWQSNFGFCCELDDECAQELTG- 141 (274)
Q Consensus 63 ~~s~~lf~vgnl~~~~~~~~~p~~~~~t~~~L~~~F~~~l~~~~G~v~~v~i~~~~~g~srgfgFV~f~~~e~a~~a~~- 141 (274)
..+++|| |+|||. ++|+++|+++|.++ |.|.+++++. .+|.++|||||+|.+.++|++|+.
T Consensus 6 ~~~~~l~-V~nlp~-----------~~t~~~l~~~f~~~-----G~v~~~~i~~-~~g~~~g~afV~f~~~~~a~~a~~~ 67 (92)
T 2dgv_A 6 SGACQIF-VRNLPF-----------DFTWKMLKDKFNEC-----GHVLYADIKM-ENGKSKGCGVVKFESPEVAERACRM 67 (92)
T ss_dssp SSCCEEE-ECSCCT-----------TCCHHHHHHHHHTT-----SCEEEEEEEE-SSSCEEEEEEEEESSHHHHHHHHHH
T ss_pred CCCcEEE-EeCCCC-----------CCCHHHHHHHHHhc-----CCEEEEEEEc-cCCCcceEEEEEECCHHHHHHHHHH
Confidence 4567899 999999 69999999999977 9999999886 588999999999999999977765
Q ss_pred CCCc
Q 024012 142 VPGV 145 (274)
Q Consensus 142 ~~g~ 145 (274)
|+|.
T Consensus 68 l~g~ 71 (92)
T 2dgv_A 68 MNGM 71 (92)
T ss_dssp HTTC
T ss_pred hCCC
Confidence 5664
No 271
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.37 E-value=4.2e-13 Score=97.80 Aligned_cols=68 Identities=10% Similarity=0.081 Sum_probs=59.7
Q ss_pred CCCceeeeecCCCcceeEEecCCCCCCCCHHHHHHHHHHHHHhhhCCcccceEEEe-cCCCCCCeEEeeeCCHHHHHHHH
Q 024012 62 QIGTTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIY-HVSWQSNFGFCCELDDECAQELT 140 (274)
Q Consensus 62 ~~~s~~lf~vgnl~~~~~~~~~p~~~~~t~~~L~~~F~~~l~~~~G~v~~v~i~~~-~~g~srgfgFV~f~~~e~a~~a~ 140 (274)
...+++|| |+|||. ++|+++|+++|.++ |.|.+|+++.+ .+|.++|||||+|.+.++|++|+
T Consensus 12 ~~~~~~l~-V~nlp~-----------~~t~~~l~~~f~~~-----G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~ 74 (103)
T 2cq0_A 12 ADDNATIR-VTNLSE-----------DTRETDLQELFRPF-----GSISRIYLAKDKTTGQSKGFAFISFHRREDAARAI 74 (103)
T ss_dssp CSSSEEEE-EESCCT-----------TCCHHHHHTTSTTT-----CCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHH
T ss_pred CCCCCEEE-EeCCCC-----------CCCHHHHHHHHHhC-----CCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHH
Confidence 44678899 999999 69999999999977 99999999885 58999999999999999997777
Q ss_pred C-CCCce
Q 024012 141 G-VPGVL 146 (274)
Q Consensus 141 ~-~~g~~ 146 (274)
. |+|..
T Consensus 75 ~~l~g~~ 81 (103)
T 2cq0_A 75 AGVSGFG 81 (103)
T ss_dssp HHTTTCE
T ss_pred HHcCCCe
Confidence 6 78753
No 272
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.37 E-value=3e-12 Score=89.62 Aligned_cols=75 Identities=20% Similarity=0.324 Sum_probs=63.8
Q ss_pred ccccEEEEcCCCC----CCCH----HHHHHHHhccCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCC
Q 024012 183 IKTKKLFVTGLSF----YTSE----KTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIING 254 (274)
Q Consensus 183 ~~~~~lfV~nLp~----~~te----~~L~~~F~~fG~i~~v~i~~d~~~g~~rG~aFV~F~s~~~A~~Ai~~l~g~~l~G 254 (274)
++..+|+|.-.|. ++-. .+|.+.|++||.|..++++.|+ +||+|.+.++|.+||+ |||..++|
T Consensus 5 Ppd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~--------~fVtF~d~~sAlaAi~-mnG~~v~G 75 (91)
T 2dnr_A 5 SSGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDK--------MWVTFLEGSSALNVLS-LNGKELLN 75 (91)
T ss_dssp CSSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSS--------EEEEESSHHHHHHGGG-GTTCEETT
T ss_pred CCCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCC--------EEEEECChHHHHHHHh-cCCeEeCC
Confidence 3467788877662 3333 6789999999999999999874 8999999999999997 99999999
Q ss_pred EEeEEEeecCCC
Q 024012 255 WMIVVDVAKTTP 266 (274)
Q Consensus 255 ~~l~V~~a~~~~ 266 (274)
|.|+|+++++.-
T Consensus 76 r~LkV~lkt~dW 87 (91)
T 2dnr_A 76 RTITIALKSPSG 87 (91)
T ss_dssp EEEEEEECCCSS
T ss_pred eEEEEEeCCCCc
Confidence 999999999864
No 273
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.36 E-value=3.8e-13 Score=98.03 Aligned_cols=66 Identities=15% Similarity=0.279 Sum_probs=58.5
Q ss_pred CCCceeeeecCCCcceeEEecCCCCCCCCHHHHHHHHHHHHHhhhCCcccceEEEecCCCCCCeEEeeeCCHHHHHHHHC
Q 024012 62 QIGTTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIYHVSWQSNFGFCCELDDECAQELTG 141 (274)
Q Consensus 62 ~~~s~~lf~vgnl~~~~~~~~~p~~~~~t~~~L~~~F~~~l~~~~G~v~~v~i~~~~~g~srgfgFV~f~~~e~a~~a~~ 141 (274)
...+++|| |+|||. ++|+++|+++|.++ |.|.+++++.+ +|.++|||||+|.+.++|++|+.
T Consensus 12 ~~~~~~l~-V~nlp~-----------~~t~~~l~~~F~~~-----G~i~~v~i~~~-~g~~~g~afV~f~~~~~A~~A~~ 73 (103)
T 2d9p_A 12 RYQVVNLY-VKNLDD-----------GIDDERLRKAFSPF-----GTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVT 73 (103)
T ss_dssp CSSCCCEE-EECCCT-----------TCCHHHHHHTTTTT-----SCEEEEEEEEC-SSSEEEEEEEEESSHHHHHHHHH
T ss_pred CCCCCEEE-EeCCCC-----------CCCHHHHHHHHHhc-----CCEEEEEEEcC-CCCcCEEEEEEECCHHHHHHHHH
Confidence 34667899 999999 69999999999977 99999999988 89999999999999999977765
Q ss_pred -CCCc
Q 024012 142 -VPGV 145 (274)
Q Consensus 142 -~~g~ 145 (274)
|+|.
T Consensus 74 ~l~g~ 78 (103)
T 2d9p_A 74 EMNGR 78 (103)
T ss_dssp HHTTC
T ss_pred HhCCC
Confidence 6764
No 274
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.36 E-value=1.4e-12 Score=97.11 Aligned_cols=67 Identities=16% Similarity=0.208 Sum_probs=58.1
Q ss_pred CCCCceeeeecCCCcceeEEecCCCCCCCCHHHHHHHHHHHHHhhhCCcccceEEEe-cCCCCCCeEEeeeCCHHHHHHH
Q 024012 61 SQIGTTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIY-HVSWQSNFGFCCELDDECAQEL 139 (274)
Q Consensus 61 ~~~~s~~lf~vgnl~~~~~~~~~p~~~~~t~~~L~~~F~~~l~~~~G~v~~v~i~~~-~~g~srgfgFV~f~~~e~a~~a 139 (274)
.....++|| |+|||. ++|+++|+++|.++ |.|.+|+|+.+ .++.++|||||+|.+.++|++|
T Consensus 13 ~~~~~~~l~-V~nlp~-----------~~t~~~l~~~F~~~-----G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A 75 (116)
T 2cqd_A 13 KDTTFTKIF-VGGLPY-----------HTTDASLRKYFEGF-----GDIEEAVVITDRQTGKSRGYGFVTMADRAAAERA 75 (116)
T ss_dssp CSCSSSEEE-EECCCS-----------SCCHHHHHHHHHTT-----SCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHH
T ss_pred CCCCCCEEE-EeCCCC-----------CCCHHHHHHHHHhC-----CCeeEEEEEEcCCCCccceEEEEEECCHHHHHHH
Confidence 345677899 999999 69999999999977 99999998875 5799999999999999999777
Q ss_pred HCC-CC
Q 024012 140 TGV-PG 144 (274)
Q Consensus 140 ~~~-~g 144 (274)
+.. ++
T Consensus 76 i~~~~~ 81 (116)
T 2cqd_A 76 CKDPNP 81 (116)
T ss_dssp HTCSSC
T ss_pred HHhCCC
Confidence 764 55
No 275
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.36 E-value=6e-13 Score=98.01 Aligned_cols=68 Identities=19% Similarity=0.392 Sum_probs=59.2
Q ss_pred CCCCceeeeecCCCcceeEEecCCCCCCCCHHHHHHHHHHHHHhhhCCcccceEEEe-cCCCCCCeEEeeeCCHHHHHHH
Q 024012 61 SQIGTTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIY-HVSWQSNFGFCCELDDECAQEL 139 (274)
Q Consensus 61 ~~~~s~~lf~vgnl~~~~~~~~~p~~~~~t~~~L~~~F~~~l~~~~G~v~~v~i~~~-~~g~srgfgFV~f~~~e~a~~a 139 (274)
+...+++|| |+|||. ++|+++|+++|.++ |.|.+++++.+ .+|.++|||||+|.+.++|++|
T Consensus 22 ~~~~~~~l~-V~nLp~-----------~~te~~l~~~F~~~-----G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A 84 (108)
T 2jrs_A 22 GSAGPMRLY-VGSLHF-----------NITEDMLRGIFEPF-----GRIESIQLMMDSETGRSKGYGFITFSDSECAKKA 84 (108)
T ss_dssp SCSSCEEEE-EECCCS-----------SCCHHHHHHHHTTT-----SCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHH
T ss_pred CCCCCCEEE-EeCCCC-----------CCCHHHHHHHHHhc-----CCeEEEEEEEcCCCCccceEEEEEECCHHHHHHH
Confidence 445678899 999999 69999999999977 99999998875 6788999999999999999777
Q ss_pred HC-CCCc
Q 024012 140 TG-VPGV 145 (274)
Q Consensus 140 ~~-~~g~ 145 (274)
++ ++|.
T Consensus 85 i~~l~g~ 91 (108)
T 2jrs_A 85 LEQLNGF 91 (108)
T ss_dssp HHHHTTC
T ss_pred HHHcCCC
Confidence 74 6764
No 276
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.35 E-value=3.9e-13 Score=96.42 Aligned_cols=67 Identities=7% Similarity=-0.040 Sum_probs=56.8
Q ss_pred CCceeeeecCCCcceeEEecCCCCCCCCHHHHHHHHHHHHHhhhCCcccceEEE-ecCCCCCCeEEeeeCCHHHHHHHHC
Q 024012 63 IGTTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCI-YHVSWQSNFGFCCELDDECAQELTG 141 (274)
Q Consensus 63 ~~s~~lf~vgnl~~~~~~~~~p~~~~~t~~~L~~~F~~~l~~~~G~v~~v~i~~-~~~g~srgfgFV~f~~~e~a~~a~~ 141 (274)
+..++|| |+|||+ ++|+++|+++|.++ |.|.+++++. ..+|+++|||||+|.++++|++|+.
T Consensus 13 ~~~~~l~-V~nlp~-----------~~t~~~l~~~F~~~-----G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~ 75 (95)
T 2ek1_A 13 PGPTVIK-VQNMPF-----------TVSIDEILDFFYGY-----QVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVI 75 (95)
T ss_dssp --CEEEE-EECCCT-----------TCCHHHHHHHTTTS-----CBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHH
T ss_pred CCCCEEE-EeCCCC-----------CCCHHHHHHHHHhc-----CCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHH
Confidence 3457899 999999 69999999999977 9999998776 5678999999999999999977775
Q ss_pred -CCCce
Q 024012 142 -VPGVL 146 (274)
Q Consensus 142 -~~g~~ 146 (274)
|+|..
T Consensus 76 ~l~g~~ 81 (95)
T 2ek1_A 76 DLNDRP 81 (95)
T ss_dssp HHTTCE
T ss_pred HhCCCe
Confidence 67753
No 277
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.35 E-value=9.4e-13 Score=94.79 Aligned_cols=66 Identities=8% Similarity=-0.026 Sum_probs=56.5
Q ss_pred CCCCceeeeecCCCcceeEEecCCCCCCCCHHHHH----HHHHHHHHhhhCCcccceEEEecCCCCCCeEEeeeCCHHHH
Q 024012 61 SQIGTTLLFPLGTTKHWLVRMDKPGVGVVTKAQMV----DRYAQILTKVLGNEKDAQMCIYHVSWQSNFGFCCELDDECA 136 (274)
Q Consensus 61 ~~~~s~~lf~vgnl~~~~~~~~~p~~~~~t~~~L~----~~F~~~l~~~~G~v~~v~i~~~~~g~srgfgFV~f~~~e~a 136 (274)
+.....+|| |||||+ ++|+++|+ ++|.++ |.|.+|+++.+..+ +|||||+|.+.++|
T Consensus 5 ~~~~~~~l~-V~nL~~-----------~~~~~~l~~~l~~~F~~~-----G~v~~v~i~~~~~~--rg~afV~f~~~~~A 65 (96)
T 2dgx_A 5 SSGNGADVQ-VSNIDY-----------RLSRKELQQLLQEAFARH-----GKVKSVELSPHTDY--QLKAVVQMENLQDA 65 (96)
T ss_dssp CCSSCEEEE-EESCCT-----------TSCHHHHHHHHHHHHHHH-----SCEEEEEECSCCST--TCCEEEEESSHHHH
T ss_pred CCCCCCEEE-EECCCC-----------CCCHHHHHHHHHHhcccc-----CcEEEEEEEeCCCC--CeEEEEEECCHHHH
Confidence 444667899 999999 69999999 999988 99999999876555 99999999999999
Q ss_pred HHHHC-CCCc
Q 024012 137 QELTG-VPGV 145 (274)
Q Consensus 137 ~~a~~-~~g~ 145 (274)
++|++ |+|.
T Consensus 66 ~~Ai~~l~g~ 75 (96)
T 2dgx_A 66 IGAVNSLHRY 75 (96)
T ss_dssp HHHHHHHTTE
T ss_pred HHHHHHhCCC
Confidence 77765 7775
No 278
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.35 E-value=4.2e-13 Score=95.35 Aligned_cols=60 Identities=23% Similarity=0.301 Sum_probs=50.2
Q ss_pred CCCCceeeeecCCCcceeEEecCCCCCCCCHHHHHHHHHHHHHhhhCCcccceEEEecCCCCCCeEEeeeCCHHHHHHHH
Q 024012 61 SQIGTTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIYHVSWQSNFGFCCELDDECAQELT 140 (274)
Q Consensus 61 ~~~~s~~lf~vgnl~~~~~~~~~p~~~~~t~~~L~~~F~~~l~~~~G~v~~v~i~~~~~g~srgfgFV~f~~~e~a~~a~ 140 (274)
++....+|| |||||+ ++|+++|+++|+++ |.|.+|+|+.+ +||||||+|.+.++|+++.
T Consensus 7 ~~~~~~~l~-V~~Lp~-----------~~te~~L~~~F~~~-----G~i~~v~i~~~----srGfaFV~F~~~~~A~~~~ 65 (89)
T 3d2w_A 7 HHHHGSKVF-VGRCTE-----------DMTAEELQQFFCQY-----GEVVDVFIPKP----FRAFAFVTFADDKVAQSLC 65 (89)
T ss_dssp ----CCEEE-EESCCT-----------TCCHHHHHHHHTTT-----SCEEEEECCSS----CCSEEEEEESCHHHHHHHT
T ss_pred CCCCCCEEE-EeCCCC-----------CCCHHHHHHHHhcc-----CCEEEEEEeeC----CCCEEEEEECCHHHHHHHc
Confidence 345667899 999999 79999999999977 99999998753 8999999999999998654
Q ss_pred C
Q 024012 141 G 141 (274)
Q Consensus 141 ~ 141 (274)
+
T Consensus 66 ~ 66 (89)
T 3d2w_A 66 G 66 (89)
T ss_dssp T
T ss_pred C
Confidence 3
No 279
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.35 E-value=3.4e-13 Score=98.27 Aligned_cols=66 Identities=17% Similarity=0.152 Sum_probs=57.8
Q ss_pred CCceeeeecCCCcceeEEecCCCCCCCCHHHHHHHHHHHHHhhhCCcccceEEEe-cCCCCCCeEEeeeCCHHHHHHHHC
Q 024012 63 IGTTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIY-HVSWQSNFGFCCELDDECAQELTG 141 (274)
Q Consensus 63 ~~s~~lf~vgnl~~~~~~~~~p~~~~~t~~~L~~~F~~~l~~~~G~v~~v~i~~~-~~g~srgfgFV~f~~~e~a~~a~~ 141 (274)
..+++|| |+|||. ++|+++|+++|.++ |.|.+++++.+ .++.++|||||+|.+.++|++|+.
T Consensus 11 ~~~~~l~-V~nLp~-----------~~t~~~l~~~f~~~-----G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~ 73 (103)
T 2dnm_A 11 DGMITLK-VDNLTY-----------RTSPDSLRRVFEKY-----GRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEA 73 (103)
T ss_dssp SCCCEEE-EESCCT-----------TCCHHHHHHHHTTT-----SCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHH
T ss_pred CCCeEEE-EeCCCC-----------CCCHHHHHHHHHhc-----CCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHH
Confidence 4567899 999999 69999999999977 99999998874 569999999999999999977776
Q ss_pred -CCCc
Q 024012 142 -VPGV 145 (274)
Q Consensus 142 -~~g~ 145 (274)
|+|.
T Consensus 74 ~l~g~ 78 (103)
T 2dnm_A 74 AMDGA 78 (103)
T ss_dssp HHSSC
T ss_pred HcCCC
Confidence 6764
No 280
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.34 E-value=1.3e-12 Score=95.25 Aligned_cols=67 Identities=15% Similarity=0.222 Sum_probs=57.4
Q ss_pred CCCCceeeeecCCCcceeEEecCCCCCCCCHHHHHHHHHHHHHhhhCCcccceEEEecCCCCCCeEEeeeCCHHHHHHHH
Q 024012 61 SQIGTTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIYHVSWQSNFGFCCELDDECAQELT 140 (274)
Q Consensus 61 ~~~~s~~lf~vgnl~~~~~~~~~p~~~~~t~~~L~~~F~~~l~~~~G~v~~v~i~~~~~g~srgfgFV~f~~~e~a~~a~ 140 (274)
....+++|| |+|||. ++|+++|+++|.++ |.|.+|+|+.+..+ ++|||||+|.+.++|++|+
T Consensus 11 ~~~~~~~l~-V~nlp~-----------~~t~~~l~~~f~~~-----G~v~~v~i~~~~~~-~~g~afV~f~~~~~a~~A~ 72 (103)
T 2cq3_A 11 SKSTPKRLH-VSNIPF-----------RFRDPDLRQMFGQF-----GKILDVEIIFNERG-SKGFGFVTFENSADADRAR 72 (103)
T ss_dssp CSCCCCEEE-EESCCT-----------TCCHHHHHHHGGGT-----SCEEEEEEECCTTT-TCCEEEEEESCHHHHHHHH
T ss_pred CCCCCCEEE-EeCCCC-----------CCCHHHHHHHHHhc-----CCeEEEEEEecCCC-CcEEEEEEECCHHHHHHHH
Confidence 445678899 999999 69999999999977 99999999876544 8999999999999997777
Q ss_pred C-CCCc
Q 024012 141 G-VPGV 145 (274)
Q Consensus 141 ~-~~g~ 145 (274)
. |+|.
T Consensus 73 ~~l~g~ 78 (103)
T 2cq3_A 73 EKLHGT 78 (103)
T ss_dssp HHHTTC
T ss_pred HHhCCC
Confidence 5 6765
No 281
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.34 E-value=1.6e-12 Score=99.90 Aligned_cols=68 Identities=13% Similarity=0.163 Sum_probs=59.4
Q ss_pred CCCCceeeeecCCCcceeEEecCCCCCCCCHHHHHHHHHHHHHhhhCCcccceEEEe-cCCCCCCeEEeeeCCHHHHHHH
Q 024012 61 SQIGTTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIY-HVSWQSNFGFCCELDDECAQEL 139 (274)
Q Consensus 61 ~~~~s~~lf~vgnl~~~~~~~~~p~~~~~t~~~L~~~F~~~l~~~~G~v~~v~i~~~-~~g~srgfgFV~f~~~e~a~~a 139 (274)
....+++|| |+|||. ++|+++|+++|.++ |.|.+|+++.+ .+|.++|||||+|.+.++|++|
T Consensus 38 ~~~~~~~l~-V~nLp~-----------~~~~~~l~~~F~~~-----G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A 100 (139)
T 1u6f_A 38 EPDVLRNLM-VNYIPT-----------TVDEVQLRQLFERY-----GPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQA 100 (139)
T ss_dssp CTTTTSEEE-EESCST-----------TCCHHHHHHHHHHH-----SCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHH
T ss_pred CCCCCCEEE-EeCCCC-----------CCCHHHHHHHHHhc-----CCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHH
Confidence 445667899 999999 69999999999988 99999998875 5688999999999999999777
Q ss_pred HC-CCCc
Q 024012 140 TG-VPGV 145 (274)
Q Consensus 140 ~~-~~g~ 145 (274)
++ |+|.
T Consensus 101 ~~~l~g~ 107 (139)
T 1u6f_A 101 IAGLNGF 107 (139)
T ss_dssp HHHTTTE
T ss_pred HHHhCCC
Confidence 75 7874
No 282
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.34 E-value=1.3e-12 Score=95.11 Aligned_cols=63 Identities=14% Similarity=0.115 Sum_probs=56.2
Q ss_pred CCCceeeeecCCCcceeEEecCCCCCCCCHHHHHHHHHHHHHhhhCCcccceEEEe-cCCCCCCeEEeeeCCHHHHHHHH
Q 024012 62 QIGTTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIY-HVSWQSNFGFCCELDDECAQELT 140 (274)
Q Consensus 62 ~~~s~~lf~vgnl~~~~~~~~~p~~~~~t~~~L~~~F~~~l~~~~G~v~~v~i~~~-~~g~srgfgFV~f~~~e~a~~a~ 140 (274)
...+++|| |+|||. ++|+++|+++|.++ |.|.+|+++.+ .+|.++|||||+|.+.++|++|+
T Consensus 12 ~~~~~~l~-v~nlp~-----------~~t~~~l~~~F~~~-----G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~ 74 (103)
T 2cqg_A 12 VQKTSDLI-VLGLPW-----------KTTEQDLKEYFSTF-----GEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVM 74 (103)
T ss_dssp CCCCCCEE-EESCCS-----------SCCHHHHHHHHGGG-----SCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHH
T ss_pred cCCCCEEE-EEcCCC-----------cCCHHHHHHHHHhc-----CCeEEEEEEecCCCCCccceEEEEECCHHHHHHHH
Confidence 34567799 999999 69999999999977 99999999885 57999999999999999998887
Q ss_pred C
Q 024012 141 G 141 (274)
Q Consensus 141 ~ 141 (274)
.
T Consensus 75 ~ 75 (103)
T 2cqg_A 75 S 75 (103)
T ss_dssp H
T ss_pred H
Confidence 6
No 283
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.34 E-value=7.5e-13 Score=96.93 Aligned_cols=66 Identities=15% Similarity=0.246 Sum_probs=57.9
Q ss_pred CCceeeeecCCCcceeEEecCCCCCCCCHHHHHHHHHHHHHhhhCCcccceEEEe-cCCCCCCeEEeeeCCHHHHHHHHC
Q 024012 63 IGTTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIY-HVSWQSNFGFCCELDDECAQELTG 141 (274)
Q Consensus 63 ~~s~~lf~vgnl~~~~~~~~~p~~~~~t~~~L~~~F~~~l~~~~G~v~~v~i~~~-~~g~srgfgFV~f~~~e~a~~a~~ 141 (274)
..+++|| |+|||. ++|+++|+++|.++ |.|.+++++.+ .+|.++|||||+|.+.++|++|+.
T Consensus 21 ~~~~~l~-V~nlp~-----------~~t~~~l~~~f~~~-----G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~ 83 (106)
T 1p27_B 21 VEGWILF-VTGVHE-----------EATEEDIHDKFAEY-----GEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAME 83 (106)
T ss_dssp TTBEEEE-EECCCT-----------TCCHHHHHHHHGGG-----SCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHH
T ss_pred CCCCEEE-EeCCCC-----------CCCHHHHHHHHhcc-----CCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHH
Confidence 4567899 999999 69999999999977 99999998875 568999999999999999977775
Q ss_pred -CCCc
Q 024012 142 -VPGV 145 (274)
Q Consensus 142 -~~g~ 145 (274)
|+|.
T Consensus 84 ~l~g~ 88 (106)
T 1p27_B 84 GLNGQ 88 (106)
T ss_dssp HHTTC
T ss_pred HhcCC
Confidence 6764
No 284
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.34 E-value=3.2e-13 Score=98.24 Aligned_cols=62 Identities=16% Similarity=0.302 Sum_probs=57.1
Q ss_pred CCceeeeecCCCcceeEEecCCCCCCCCHHHHHHHHHHHHHhhhCCcccceEEEecCCCCCCeEEeeeCCHHHHHHHHC
Q 024012 63 IGTTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIYHVSWQSNFGFCCELDDECAQELTG 141 (274)
Q Consensus 63 ~~s~~lf~vgnl~~~~~~~~~p~~~~~t~~~L~~~F~~~l~~~~G~v~~v~i~~~~~g~srgfgFV~f~~~e~a~~a~~ 141 (274)
..+++|| |||||. ++|+++|+++|.++ |.|.+++++.+.+|.++|||||+|.+.++|++|+.
T Consensus 7 ~~~~~l~-V~nLp~-----------~~t~~~l~~~F~~~-----G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~Ai~ 68 (102)
T 2xs2_A 7 IMPNTVF-VGGIDV-----------RMDETEIRSFFARY-----GSVKEVKIITDRTGVSKGYGFVSFYNDVDVQKIVE 68 (102)
T ss_dssp EEEEEEE-EECCCT-----------TCCHHHHHHHHGGG-----SCEEEEEEEECTTSCEEEEEEEEESSCCCHHHHTT
T ss_pred CCCCEEE-EeCCCC-----------CCCHHHHHHHHHhC-----CCeEEEEEEECCCCCccceEEEEECCHHHHHHHHh
Confidence 3567899 999999 69999999999977 99999999987799999999999999999999887
No 285
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.34 E-value=1.4e-12 Score=96.38 Aligned_cols=66 Identities=6% Similarity=-0.106 Sum_probs=54.6
Q ss_pred CCCCCceeeeecCCCcceeEEecCCCCCCCCHHHHHHHHHHHHHhhhC-CcccceEEEecCCCCCCeEEeeeCCHHHHHH
Q 024012 60 NSQIGTTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLG-NEKDAQMCIYHVSWQSNFGFCCELDDECAQE 138 (274)
Q Consensus 60 ~~~~~s~~lf~vgnl~~~~~~~~~p~~~~~t~~~L~~~F~~~l~~~~G-~v~~v~i~~~~~g~srgfgFV~f~~~e~a~~ 138 (274)
.++.....|| |||||+ ++|+++|+++|.++ | .|..+++. ...++|||||+|.+.++|++
T Consensus 23 ~~p~~~~~l~-VgnLp~-----------~~te~dL~~~F~~~-----G~~v~~v~i~---~~~~rGfaFV~F~~~e~A~~ 82 (111)
T 2jvr_A 23 KLPAKRYRIT-MKNLPE-----------GCSWQDLKDLAREN-----SLETTFSSVN---TRDFDGTGALEFPSEEILVE 82 (111)
T ss_dssp --CCCCEEEE-EECSSC-----------CCCHHHHHHHHHHH-----TCCCSEEECS---SCSSSCCEEEEESSHHHHHH
T ss_pred CCCCCCCEEE-EECCCC-----------CCCHHHHHHHHHHh-----CCeeEEEEEE---cCCCCCEEEEEECCHHHHHH
Confidence 3445667899 999999 79999999999988 9 89888774 34689999999999999977
Q ss_pred HH-CCCCc
Q 024012 139 LT-GVPGV 145 (274)
Q Consensus 139 a~-~~~g~ 145 (274)
|+ .|||.
T Consensus 83 Ai~~lng~ 90 (111)
T 2jvr_A 83 ALERLNNI 90 (111)
T ss_dssp HHHHTTTE
T ss_pred HHHHcCCC
Confidence 76 57875
No 286
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.34 E-value=1.3e-12 Score=98.55 Aligned_cols=68 Identities=15% Similarity=0.046 Sum_probs=59.9
Q ss_pred CCCCceeeeecCCCcceeEEecCCCCCCCCHHHHHHHHHHHHHhhhCCcccceEEEecCCCCCCeEEeeeCCHHHHHHHH
Q 024012 61 SQIGTTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIYHVSWQSNFGFCCELDDECAQELT 140 (274)
Q Consensus 61 ~~~~s~~lf~vgnl~~~~~~~~~p~~~~~t~~~L~~~F~~~l~~~~G~v~~v~i~~~~~g~srgfgFV~f~~~e~a~~a~ 140 (274)
....+++|| |+|||. ++|+++|+++|.++ |.|.++++..+.+|.++|||||+|.+.++|++|+
T Consensus 31 ~~~~~~~l~-V~nlp~-----------~~t~~~l~~~F~~~-----G~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai 93 (124)
T 2kt5_A 31 GVETGAKLL-VSNLDF-----------GVSDADIQELFAEF-----GTLKKAAVDYDRSGRSLGTADVHFERRADALKAM 93 (124)
T ss_dssp CCSSCEEEE-EESCCS-----------SCCHHHHHHHHHTT-----SCCSEEEEECCSSSSCCSEEEEEESSHHHHHHHH
T ss_pred CCCCCCEEE-EeCCCC-----------CCCHHHHHHHHHhc-----CCeeEEEEEECCCCCEeeEEEEEECCHHHHHHHH
Confidence 334567899 999999 69999999999977 9999999998779999999999999999997777
Q ss_pred C-CCCc
Q 024012 141 G-VPGV 145 (274)
Q Consensus 141 ~-~~g~ 145 (274)
. ++|.
T Consensus 94 ~~l~g~ 99 (124)
T 2kt5_A 94 KQYKGV 99 (124)
T ss_dssp HHHTTE
T ss_pred HHcCCC
Confidence 6 6764
No 287
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.33 E-value=6.3e-13 Score=95.61 Aligned_cols=64 Identities=17% Similarity=0.272 Sum_probs=56.4
Q ss_pred ceeeeecCCCcceeEEecCCCCCCCCHHHHHHHHHHHHHhhhCCcccceEEEe-cCCCCCCeEEeeeCCHHHHHHHH-CC
Q 024012 65 TTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIY-HVSWQSNFGFCCELDDECAQELT-GV 142 (274)
Q Consensus 65 s~~lf~vgnl~~~~~~~~~p~~~~~t~~~L~~~F~~~l~~~~G~v~~v~i~~~-~~g~srgfgFV~f~~~e~a~~a~-~~ 142 (274)
+++|| |||||. ++|+++|+++|.++ |.|.+++++.+ .+|.++|||||+|.+.++|++|+ .|
T Consensus 2 ~~~l~-V~nLp~-----------~~t~~~l~~~F~~~-----G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l 64 (96)
T 2x1f_A 2 SRVVY-LGSIPY-----------DQTEEQILDLCSNV-----GPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNL 64 (96)
T ss_dssp CSEEE-EESCCT-----------TCCHHHHHHHHHTT-----SCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHH
T ss_pred CcEEE-EECCCC-----------CCCHHHHHHHHHhc-----CCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHh
Confidence 56799 999999 69999999999977 99999998875 56899999999999999997777 46
Q ss_pred CCc
Q 024012 143 PGV 145 (274)
Q Consensus 143 ~g~ 145 (274)
+|.
T Consensus 65 ~g~ 67 (96)
T 2x1f_A 65 NGY 67 (96)
T ss_dssp TTC
T ss_pred CCC
Confidence 764
No 288
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.33 E-value=8.6e-13 Score=99.46 Aligned_cols=66 Identities=5% Similarity=0.126 Sum_probs=59.3
Q ss_pred CceeeeecCCCcceeEEecCCCCCCCCHHHHHHHHHHHHHhhhCCcccceEEEe-cCCCCCCeEEeeeCCHHHHHHHHCC
Q 024012 64 GTTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIY-HVSWQSNFGFCCELDDECAQELTGV 142 (274)
Q Consensus 64 ~s~~lf~vgnl~~~~~~~~~p~~~~~t~~~L~~~F~~~l~~~~G~v~~v~i~~~-~~g~srgfgFV~f~~~e~a~~a~~~ 142 (274)
.+++|| |+|||+ ++|+++|+++|.++ |.|.+|+++.+ .+|.++|||||+|.+.++|++|+++
T Consensus 35 ~~~~l~-V~nlp~-----------~~t~~~l~~~F~~~-----G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~l 97 (124)
T 2jwn_A 35 DKRSVY-VGNVDY-----------GSTAQDLEAHFSSC-----GSINRITILCDKFSGHPKGYAYIEFAERNSVDAAVAM 97 (124)
T ss_dssp HHTEEE-EEEECT-----------TCCHHHHHHHHHTT-----SCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHHTT
T ss_pred CCCEEE-EeCCCC-----------CCCHHHHHHHHHhc-----CCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHHhc
Confidence 456899 999999 69999999999977 99999998875 6899999999999999999888888
Q ss_pred CCce
Q 024012 143 PGVL 146 (274)
Q Consensus 143 ~g~~ 146 (274)
+|..
T Consensus 98 ~g~~ 101 (124)
T 2jwn_A 98 DETV 101 (124)
T ss_dssp TTCE
T ss_pred CCCe
Confidence 8854
No 289
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.33 E-value=8.8e-13 Score=97.25 Aligned_cols=68 Identities=9% Similarity=0.228 Sum_probs=59.0
Q ss_pred CCCceeeeecCCCcceeEEecCCCCCCCCHHHHHHHHHHHHHhhhCCcccceEEEe-cCCCCCCeEEeeeCCHHHHHHHH
Q 024012 62 QIGTTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIY-HVSWQSNFGFCCELDDECAQELT 140 (274)
Q Consensus 62 ~~~s~~lf~vgnl~~~~~~~~~p~~~~~t~~~L~~~F~~~l~~~~G~v~~v~i~~~-~~g~srgfgFV~f~~~e~a~~a~ 140 (274)
...+++|| |+|||. ++|+++|+++|.++ |.|.+++++.+ .+|.++|||||+|.+.++|++|+
T Consensus 23 ~~~~~~l~-V~nlp~-----------~~t~~~l~~~F~~~-----G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai 85 (110)
T 1oo0_B 23 SVEGWILF-VTSIHE-----------EAQEDEIQEKFCDY-----GEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAK 85 (110)
T ss_dssp BTTBEEEE-EESCCT-----------TCCHHHHHHHHGGG-----SCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHH
T ss_pred CCCCCEEE-EeCCCC-----------CCCHHHHHHHHHhc-----CCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH
Confidence 34678899 999999 69999999999977 99999998774 67999999999999999997777
Q ss_pred C-CCCce
Q 024012 141 G-VPGVL 146 (274)
Q Consensus 141 ~-~~g~~ 146 (274)
. |+|..
T Consensus 86 ~~l~g~~ 92 (110)
T 1oo0_B 86 EALNGAE 92 (110)
T ss_dssp HHHTTCE
T ss_pred HHcCCCE
Confidence 5 67753
No 290
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.33 E-value=1e-12 Score=94.82 Aligned_cols=66 Identities=21% Similarity=0.297 Sum_probs=56.8
Q ss_pred CceeeeecCCCcceeEEecCCCCCCCCHHHHHHHHHHHHHhhhCCcccceEEEec----CCCCCCeEEeeeCCHHHHHHH
Q 024012 64 GTTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIYH----VSWQSNFGFCCELDDECAQEL 139 (274)
Q Consensus 64 ~s~~lf~vgnl~~~~~~~~~p~~~~~t~~~L~~~F~~~l~~~~G~v~~v~i~~~~----~g~srgfgFV~f~~~e~a~~a 139 (274)
.+++|| |+|||. ++|+++|+++|.++ |.|.+++++.+. ++.++|||||+|.+.++|++|
T Consensus 4 ~~~~l~-V~nLp~-----------~~t~~~l~~~F~~~-----G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A 66 (98)
T 2cpf_A 4 GSSGLF-IKNLNF-----------STTEETLKGVFSKV-----GAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKA 66 (98)
T ss_dssp CCCCEE-EESCCT-----------TCCHHHHHHHHHTT-----SCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHH
T ss_pred CCCEEE-EeCCCC-----------CCCHHHHHHHHHhc-----CCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHH
Confidence 456799 999999 69999999999977 999999988754 448999999999999999777
Q ss_pred HC-CCCce
Q 024012 140 TG-VPGVL 146 (274)
Q Consensus 140 ~~-~~g~~ 146 (274)
+. |+|..
T Consensus 67 ~~~l~g~~ 74 (98)
T 2cpf_A 67 LKQLQGHT 74 (98)
T ss_dssp HHHSTTCE
T ss_pred HHHhCCCe
Confidence 76 78753
No 291
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.33 E-value=1.1e-12 Score=97.68 Aligned_cols=65 Identities=17% Similarity=0.152 Sum_probs=58.0
Q ss_pred CceeeeecCCCcceeEEecCCCCCCCCHHHHHHHHHHHHHhhhCCcccceEEEe-cCCCCCCeEEeeeCCHHHHHHHHCC
Q 024012 64 GTTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIY-HVSWQSNFGFCCELDDECAQELTGV 142 (274)
Q Consensus 64 ~s~~lf~vgnl~~~~~~~~~p~~~~~t~~~L~~~F~~~l~~~~G~v~~v~i~~~-~~g~srgfgFV~f~~~e~a~~a~~~ 142 (274)
..++|| |+|||. ++|+++|+++|.++ |.|.+|+++.+ .+|.++|||||+|.+.++|++|+..
T Consensus 26 ~~~~l~-V~nLp~-----------~~te~~l~~~F~~~-----G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~ 88 (116)
T 1x4b_A 26 QFRKLF-IGGLSF-----------ETTEESLRNYYEQW-----GKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA 88 (116)
T ss_dssp HHTEEE-EECCTT-----------CCCHHHHHHHHTSS-----CCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS
T ss_pred CCCEEE-EeCCCC-----------CCCHHHHHHHHHhc-----CCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh
Confidence 457899 999999 69999999999976 99999999885 5699999999999999999999887
Q ss_pred CCc
Q 024012 143 PGV 145 (274)
Q Consensus 143 ~g~ 145 (274)
+|.
T Consensus 89 ~~~ 91 (116)
T 1x4b_A 89 RPH 91 (116)
T ss_dssp CSE
T ss_pred CCc
Confidence 654
No 292
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.33 E-value=7.2e-13 Score=101.60 Aligned_cols=67 Identities=15% Similarity=0.110 Sum_probs=58.2
Q ss_pred CCCceeeeecCCCcceeEEecCCCCCCCCHHHHHHHHHHHHHhhhCCcccceEEEe-cCCCCCCeEEeeeCCHHHHHHHH
Q 024012 62 QIGTTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIY-HVSWQSNFGFCCELDDECAQELT 140 (274)
Q Consensus 62 ~~~s~~lf~vgnl~~~~~~~~~p~~~~~t~~~L~~~F~~~l~~~~G~v~~v~i~~~-~~g~srgfgFV~f~~~e~a~~a~ 140 (274)
...+++|| |+|||. ++|+++|+++|.++ |.|.+|+++.+ .++.++|||||+|.+.++|++|+
T Consensus 44 ~~~~~~l~-V~nLp~-----------~~te~~L~~~F~~~-----G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai 106 (135)
T 2lea_A 44 VEGMTSLK-VDNLTY-----------RTSPDTLRRVFEKY-----GRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAM 106 (135)
T ss_dssp GGGCCCEE-EECCCS-----------SCHHHHHHHHHGGG-----SCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHH
T ss_pred CCCCCEEE-EeCCCC-----------CCCHHHHHHHHHhc-----CCEEEEEEEecCCCCccceEEEEEECCHHHHHHHH
Confidence 34567899 999999 69999999999977 99999998874 57999999999999999998877
Q ss_pred C-CCCc
Q 024012 141 G-VPGV 145 (274)
Q Consensus 141 ~-~~g~ 145 (274)
. |+|.
T Consensus 107 ~~l~g~ 112 (135)
T 2lea_A 107 DAMDGA 112 (135)
T ss_dssp TTTTTC
T ss_pred HHcCCC
Confidence 5 6764
No 293
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.33 E-value=5e-13 Score=97.91 Aligned_cols=64 Identities=9% Similarity=0.062 Sum_probs=55.8
Q ss_pred ceeeeecCCCcceeEEecCCCCCCC------CHHHHHHHHHHHHHhhhCCcccceEEEecCCCCCCeEEeeeCCHHHHHH
Q 024012 65 TTLLFPLGTTKHWLVRMDKPGVGVV------TKAQMVDRYAQILTKVLGNEKDAQMCIYHVSWQSNFGFCCELDDECAQE 138 (274)
Q Consensus 65 s~~lf~vgnl~~~~~~~~~p~~~~~------t~~~L~~~F~~~l~~~~G~v~~v~i~~~~~g~srgfgFV~f~~~e~a~~ 138 (274)
+++|| |||||+ .+ |+++|+++|+++ |.|.+++|+ +.+|+++|||||+|.+.++|++
T Consensus 15 ~~~l~-V~nLp~-----------~~~~~~~~t~~~l~~~F~~~-----G~v~~v~i~-~~~g~~~G~afV~f~~~~~A~~ 76 (105)
T 2nlw_A 15 DSVIV-VDNVPQ-----------VGPDRLEKLKNVIHKIFSKF-----GKITNDFYP-EEDGKTKGYIFLEYASPAHAVD 76 (105)
T ss_dssp CSEEE-EESCCC-----------CCTTTTTHHHHHHHHHHGGG-----SCEEEEECC-CBTTBSCCEEEEEECSSSHHHH
T ss_pred CCEEE-EeCCCc-----------chhhhhHHHHHHHHHHHhcC-----CCEEEEEee-CCCCCeeeEEEEEECCHHHHHH
Confidence 56799 999999 47 789999999977 999999988 6789999999999999999966
Q ss_pred HHC-CCCce
Q 024012 139 LTG-VPGVL 146 (274)
Q Consensus 139 a~~-~~g~~ 146 (274)
|+. |+|..
T Consensus 77 Ai~~l~g~~ 85 (105)
T 2nlw_A 77 AVKNADGYK 85 (105)
T ss_dssp HHHHCSSEE
T ss_pred HHHHhCCcc
Confidence 665 78754
No 294
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.33 E-value=1.8e-12 Score=96.11 Aligned_cols=67 Identities=13% Similarity=0.087 Sum_probs=58.4
Q ss_pred CCceeeeecCCCcceeEEecCCCCCCCCHHHHHHHHHHHHHhhhCCcc--------cceEEEe-cCCCCCCeEEeeeCCH
Q 024012 63 IGTTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEK--------DAQMCIY-HVSWQSNFGFCCELDD 133 (274)
Q Consensus 63 ~~s~~lf~vgnl~~~~~~~~~p~~~~~t~~~L~~~F~~~l~~~~G~v~--------~v~i~~~-~~g~srgfgFV~f~~~ 133 (274)
..+++|| |+|||. ++|+++|+++|.++ |.|. +++++.+ .+|.++|||||+|.+.
T Consensus 13 ~~~~~l~-V~nLp~-----------~~t~~~l~~~F~~~-----G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~ 75 (113)
T 2cpe_A 13 SDNSAIY-VQGLND-----------SVTLDDLADFFKQC-----GVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDP 75 (113)
T ss_dssp CCCCEEE-EECCCT-----------TCCHHHHHHHHTTT-----SCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSH
T ss_pred CCCCEEE-EcCCCC-----------CCCHHHHHHHHHhc-----CCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCH
Confidence 4567899 999999 69999999999977 9998 6888875 7899999999999999
Q ss_pred HHHHHHHC-CCCce
Q 024012 134 ECAQELTG-VPGVL 146 (274)
Q Consensus 134 e~a~~a~~-~~g~~ 146 (274)
++|++|++ |+|..
T Consensus 76 ~~A~~Ai~~l~g~~ 89 (113)
T 2cpe_A 76 PTAKAAVEWFDGKD 89 (113)
T ss_dssp HHHHHHHHHHTTCE
T ss_pred HHHHHHHHHcCCCc
Confidence 99977776 67753
No 295
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.33 E-value=1.1e-12 Score=99.86 Aligned_cols=68 Identities=13% Similarity=0.105 Sum_probs=58.6
Q ss_pred CCCCceeeeecCCCcceeEEecCCCCCCCCHHHHHHHHHHHHHhhhCCcccceEEEe-cCCCCCCeEEeeeCCHHHHHHH
Q 024012 61 SQIGTTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIY-HVSWQSNFGFCCELDDECAQEL 139 (274)
Q Consensus 61 ~~~~s~~lf~vgnl~~~~~~~~~p~~~~~t~~~L~~~F~~~l~~~~G~v~~v~i~~~-~~g~srgfgFV~f~~~e~a~~a 139 (274)
.+..+++|| |+|||. ++|+++|+++|.++ |.|.+|+++.+ .+|.++|||||+|.+.++|++|
T Consensus 42 ~~~~~~~l~-V~nLp~-----------~~te~~L~~~F~~~-----G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~A 104 (129)
T 2kxn_B 42 NPDPNCCLG-VFGLSL-----------YTTERDLREVFSKY-----GPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEA 104 (129)
T ss_dssp CCCCSSCBC-EETCTT-----------SCCHHHHHHHHTTT-----SCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHH
T ss_pred CCCCCCEEE-EeCCCC-----------CCCHHHHHHHHHhc-----CCeEEEEEEecCCCCccceEEEEEECCHHHHHHH
Confidence 344567899 999999 69999999999977 99999998874 5789999999999999999777
Q ss_pred HC-CCCc
Q 024012 140 TG-VPGV 145 (274)
Q Consensus 140 ~~-~~g~ 145 (274)
++ |+|.
T Consensus 105 i~~lng~ 111 (129)
T 2kxn_B 105 KERANGM 111 (129)
T ss_dssp HHHHTTC
T ss_pred HHHhCCC
Confidence 75 6764
No 296
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.33 E-value=1.3e-12 Score=102.56 Aligned_cols=66 Identities=12% Similarity=0.242 Sum_probs=56.4
Q ss_pred CceeeeecCCCcceeEEecCCCCCCCCHHHHHHHHHHHHHhhhC--CcccceEEEe-cCCCCCCeEEeeeCCHHHHHHHH
Q 024012 64 GTTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLG--NEKDAQMCIY-HVSWQSNFGFCCELDDECAQELT 140 (274)
Q Consensus 64 ~s~~lf~vgnl~~~~~~~~~p~~~~~t~~~L~~~F~~~l~~~~G--~v~~v~i~~~-~~g~srgfgFV~f~~~e~a~~a~ 140 (274)
..++|| |||||+ ++|+++|+++|.++ | .|.+|+++.+ .+|+++|||||+|.+.++|++|+
T Consensus 54 ~~~~lf-VgnLp~-----------~~te~~L~~~F~~~-----G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai 116 (156)
T 3n9u_C 54 RRAAVY-VGSFSW-----------WTTDQQLIQVIRSI-----GVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLL 116 (156)
T ss_dssp --CEEE-EECCCT-----------TCCHHHHHHHHHHT-----TCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHH
T ss_pred CCCEEE-EeCCCC-----------CCCHHHHHHHHHHH-----CCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHH
Confidence 457899 999999 59999999999987 9 9999998875 68999999999999999997666
Q ss_pred C-CCCce
Q 024012 141 G-VPGVL 146 (274)
Q Consensus 141 ~-~~g~~ 146 (274)
. |+|..
T Consensus 117 ~~lng~~ 123 (156)
T 3n9u_C 117 ELLPGKV 123 (156)
T ss_dssp HHSTTCE
T ss_pred HHcCCCE
Confidence 4 57653
No 297
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.33 E-value=7.6e-13 Score=92.89 Aligned_cols=66 Identities=14% Similarity=0.141 Sum_probs=57.5
Q ss_pred CCceeeeecCCCcceeEEecCCCCCCCCHHHHHHHHHHHHHhhhCCcccceEEEe-cCCCCCCeEEeeeCCHHHHHHHHC
Q 024012 63 IGTTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIY-HVSWQSNFGFCCELDDECAQELTG 141 (274)
Q Consensus 63 ~~s~~lf~vgnl~~~~~~~~~p~~~~~t~~~L~~~F~~~l~~~~G~v~~v~i~~~-~~g~srgfgFV~f~~~e~a~~a~~ 141 (274)
..+++|| |+|||. ++|+++|+++|.++ |.|.+++++.+ .+|.++|||||+|.+.++|++|+.
T Consensus 3 ~~~~~l~-v~nlp~-----------~~t~~~l~~~f~~~-----G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~ 65 (85)
T 1x4e_A 3 SGSSGLY-IRGLQP-----------GTTDQDLVKLCQPY-----GKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVT 65 (85)
T ss_dssp CCCCEEE-EESCCT-----------TCCHHHHHTTSTTT-----SCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHH
T ss_pred CCCcEEE-EeCCCC-----------CCCHHHHHHHHHhc-----CCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH
Confidence 3567899 999999 69999999999977 99999998875 579999999999999999977765
Q ss_pred -CCCc
Q 024012 142 -VPGV 145 (274)
Q Consensus 142 -~~g~ 145 (274)
|+|.
T Consensus 66 ~l~g~ 70 (85)
T 1x4e_A 66 ALKAS 70 (85)
T ss_dssp HHHHH
T ss_pred HhcCC
Confidence 6653
No 298
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.32 E-value=1.9e-12 Score=94.87 Aligned_cols=68 Identities=10% Similarity=0.176 Sum_probs=57.9
Q ss_pred CCCCceeeeecCCCcceeEEecCCCCCCCCHHHHHHHHHHHHHhhhCCcccceEEEec--CCCCCCeEEeeeCCHHHHHH
Q 024012 61 SQIGTTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIYH--VSWQSNFGFCCELDDECAQE 138 (274)
Q Consensus 61 ~~~~s~~lf~vgnl~~~~~~~~~p~~~~~t~~~L~~~F~~~l~~~~G~v~~v~i~~~~--~g~srgfgFV~f~~~e~a~~ 138 (274)
....+++|| |+|||. ++|+++|+++|.++ |.|.+|+++.+. +|.++|||||+|.+.++|++
T Consensus 11 ~~~~~~~l~-V~nlp~-----------~~t~~~l~~~F~~~-----G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~ 73 (107)
T 2cph_A 11 KKQTTSKIL-VRNIPF-----------QANQREIRELFSTF-----GELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKK 73 (107)
T ss_dssp CSSCCCCEE-EESCCT-----------TCCHHHHHHHHHTT-----SCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHH
T ss_pred cCCCCCEEE-EeCCCC-----------cCCHHHHHHHHHcc-----CCeEEEEEecCCCCCCCcCceEEEEECCHHHHHH
Confidence 334667899 999999 69999999999977 999999988753 89999999999999999977
Q ss_pred HHC-C-CCc
Q 024012 139 LTG-V-PGV 145 (274)
Q Consensus 139 a~~-~-~g~ 145 (274)
|+. | +|.
T Consensus 74 A~~~l~~~~ 82 (107)
T 2cph_A 74 AFNALCHST 82 (107)
T ss_dssp HHHHHHTCC
T ss_pred HHHHhccCC
Confidence 664 5 554
No 299
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.32 E-value=1.1e-12 Score=97.27 Aligned_cols=67 Identities=12% Similarity=0.173 Sum_probs=59.0
Q ss_pred CCceeeeecCCCcceeEEecCCCCCCCCHHHHHHHHHHHHHhhhCCcccceEEEecCCCCCCeEEeeeCCHHHHHHHHC-
Q 024012 63 IGTTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIYHVSWQSNFGFCCELDDECAQELTG- 141 (274)
Q Consensus 63 ~~s~~lf~vgnl~~~~~~~~~p~~~~~t~~~L~~~F~~~l~~~~G~v~~v~i~~~~~g~srgfgFV~f~~~e~a~~a~~- 141 (274)
...++|| |+|||. ++|+++|+++|.++ |.|.+++++.+.+|.++|||||+|.+.++|++|+.
T Consensus 23 ~~~~~l~-V~nlp~-----------~~t~~~l~~~F~~~-----G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~ 85 (114)
T 1x5o_A 23 QDPTNLY-ISNLPL-----------SMDEQELENMLKPF-----GQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGH 85 (114)
T ss_dssp CCTTEEE-EESCCT-----------TCCHHHHHHTTTTT-----SCEEEEEEEECSSSCEEEEEEEEESCHHHHHHHHHH
T ss_pred CCCCEEE-EeCCCC-----------CCCHHHHHHHHHhc-----CCEEEEEEEECCCCCcceEEEEEECCHHHHHHHHHH
Confidence 4567899 999999 69999999999977 99999999987799999999999999999977765
Q ss_pred CCCce
Q 024012 142 VPGVL 146 (274)
Q Consensus 142 ~~g~~ 146 (274)
|+|..
T Consensus 86 l~g~~ 90 (114)
T 1x5o_A 86 FNGKF 90 (114)
T ss_dssp HBTCC
T ss_pred hCCCE
Confidence 67653
No 300
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.32 E-value=2e-12 Score=95.44 Aligned_cols=65 Identities=12% Similarity=0.152 Sum_probs=56.4
Q ss_pred CCCceeeeecCCCcceeEEecCCCCCCCCHHHHHHHHHHHHHhhhCCcccceEEEe-cCCCCCCeEEeeeCCHHHHHHHH
Q 024012 62 QIGTTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIY-HVSWQSNFGFCCELDDECAQELT 140 (274)
Q Consensus 62 ~~~s~~lf~vgnl~~~~~~~~~p~~~~~t~~~L~~~F~~~l~~~~G~v~~v~i~~~-~~g~srgfgFV~f~~~e~a~~a~ 140 (274)
...+++|| |+|||. ++|+++|+++|.++ |.|.+|+++.+ .+|.++|||||+|.+.++|++|+
T Consensus 12 ~~~~~~l~-V~nLp~-----------~~t~~~l~~~F~~~-----G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~ 74 (111)
T 1x4h_A 12 VTEGKTVF-IRNLSF-----------DSEEEALGEVLQQF-----GDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCL 74 (111)
T ss_dssp CCCCCCEE-EESCCT-----------TCCHHHHHHHHHTT-----SCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHH
T ss_pred CCCCCEEE-EECCCC-----------CCCHHHHHHHHHhc-----CCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHH
Confidence 34567899 999999 69999999999977 99999998874 56899999999999999997776
Q ss_pred C-CC
Q 024012 141 G-VP 143 (274)
Q Consensus 141 ~-~~ 143 (274)
. ++
T Consensus 75 ~~~~ 78 (111)
T 1x4h_A 75 AAAS 78 (111)
T ss_dssp HHHC
T ss_pred HHhc
Confidence 4 55
No 301
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.32 E-value=2.3e-12 Score=94.84 Aligned_cols=65 Identities=15% Similarity=0.212 Sum_probs=56.1
Q ss_pred CCCceeeeecCCCcceeEEecCCCCCCCCHHHHHHHHHHHHHhhhCCcccceEEEecCCCCCCeEEeeeCCHHHHHHHH-
Q 024012 62 QIGTTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIYHVSWQSNFGFCCELDDECAQELT- 140 (274)
Q Consensus 62 ~~~s~~lf~vgnl~~~~~~~~~p~~~~~t~~~L~~~F~~~l~~~~G~v~~v~i~~~~~g~srgfgFV~f~~~e~a~~a~- 140 (274)
...+++|| |+|||. ++|+++|+++|.++ |.|.+++++ .++.++|||||+|.+.++|++|+
T Consensus 19 ~~~~~~l~-V~nLp~-----------~~t~~~l~~~F~~~-----G~v~~~~i~--~~~~~~g~afV~f~~~~~A~~A~~ 79 (109)
T 1x4a_A 19 GNNDCRIY-VGNLPP-----------DIRTKDIEDVFYKY-----GAIRDIDLK--NRRGGPPFAFVEFEDPRDAEDAVY 79 (109)
T ss_dssp CCCSSEEE-EESCCT-----------TCCHHHHHHHHGGG-----SCEEEEEEC--CSSSSSCCEEEEESCHHHHHHHHH
T ss_pred CCCCCEEE-EeCCCC-----------CCCHHHHHHHHHhc-----CCeEEEEEE--ECCCCCcEEEEEECCHHHHHHHHH
Confidence 34567899 999999 69999999999977 999998885 56778999999999999997777
Q ss_pred CCCCc
Q 024012 141 GVPGV 145 (274)
Q Consensus 141 ~~~g~ 145 (274)
.|+|.
T Consensus 80 ~l~g~ 84 (109)
T 1x4a_A 80 GRDGY 84 (109)
T ss_dssp HHTTC
T ss_pred HcCCC
Confidence 66765
No 302
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.31 E-value=1.1e-12 Score=99.14 Aligned_cols=66 Identities=15% Similarity=0.246 Sum_probs=58.0
Q ss_pred CCceeeeecCCCcceeEEecCCCCCCCCHHHHHHHHHHHHHhhhCCcccceEEEe-cCCCCCCeEEeeeCCHHHHHHHHC
Q 024012 63 IGTTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIY-HVSWQSNFGFCCELDDECAQELTG 141 (274)
Q Consensus 63 ~~s~~lf~vgnl~~~~~~~~~p~~~~~t~~~L~~~F~~~l~~~~G~v~~v~i~~~-~~g~srgfgFV~f~~~e~a~~a~~ 141 (274)
..+++|| |+|||. ++|+++|+++|.++ |.|.+|+|+.+ .+|.++|||||+|.+.++|++|++
T Consensus 20 ~~~~~l~-V~nlp~-----------~~t~~~l~~~F~~~-----G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~ 82 (126)
T 3ex7_B 20 VEGWILF-VTGVHE-----------EATEEDIHDKFAEY-----GEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAME 82 (126)
T ss_dssp SSSEEEE-EESCCT-----------TCCHHHHHHHHHTT-----SCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHH
T ss_pred CCCCEEE-EeCCCC-----------CCCHHHHHHHHHhc-----CCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHH
Confidence 4567899 999999 69999999999977 99999998875 489999999999999999977774
Q ss_pred -CCCc
Q 024012 142 -VPGV 145 (274)
Q Consensus 142 -~~g~ 145 (274)
|+|.
T Consensus 83 ~l~g~ 87 (126)
T 3ex7_B 83 GLNGQ 87 (126)
T ss_dssp HHTTC
T ss_pred HhCCC
Confidence 6774
No 303
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.31 E-value=2.2e-12 Score=95.23 Aligned_cols=58 Identities=14% Similarity=0.082 Sum_probs=50.9
Q ss_pred CCCceeeeecCCCcceeEEecCCCCCC-CCHHHHHHHHHHHHHhhhCCcccceEEEecCCCCCCeEEeeeCCHHHHHHHH
Q 024012 62 QIGTTLLFPLGTTKHWLVRMDKPGVGV-VTKAQMVDRYAQILTKVLGNEKDAQMCIYHVSWQSNFGFCCELDDECAQELT 140 (274)
Q Consensus 62 ~~~s~~lf~vgnl~~~~~~~~~p~~~~-~t~~~L~~~F~~~l~~~~G~v~~v~i~~~~~g~srgfgFV~f~~~e~a~~a~ 140 (274)
...+++|| |||||+ + +|+++|+++|.++ |.|.+|+|+ ++||||||+|.+.++|++|+
T Consensus 22 ~~p~~~l~-V~NLp~-----------~~~te~~L~~lF~~f-----G~V~~v~i~-----~~kg~aFVef~~~~~A~~Ai 79 (112)
T 1x4f_A 22 QELGRVIH-LSNLPH-----------SGYSDSAVLKLAEPY-----GKIKNYILM-----RMKSQAFIEMETREDAMAMV 79 (112)
T ss_dssp SCCCCEEE-EESCCC-----------SSCCSHHHHTTTTTT-----SCCSEEEEE-----TTTTEEEEECSSHHHHHHHH
T ss_pred CCCCCEEE-EeCCCC-----------ccCCHHHHHHHHHhc-----CCEEEEEEe-----cCCCEEEEEECCHHHHHHHH
Confidence 44578899 999999 7 9999999999977 999999986 35899999999999997666
Q ss_pred C
Q 024012 141 G 141 (274)
Q Consensus 141 ~ 141 (274)
+
T Consensus 80 ~ 80 (112)
T 1x4f_A 80 D 80 (112)
T ss_dssp H
T ss_pred H
Confidence 4
No 304
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.31 E-value=3.3e-12 Score=96.75 Aligned_cols=63 Identities=14% Similarity=0.125 Sum_probs=53.2
Q ss_pred CceeeeecCCCcceeEEecCCCCCCCCHHHHH----HHHHHHHHhhhCCcccceEEEecCCCCCCeEEeeeCCHHHHHHH
Q 024012 64 GTTLLFPLGTTKHWLVRMDKPGVGVVTKAQMV----DRYAQILTKVLGNEKDAQMCIYHVSWQSNFGFCCELDDECAQEL 139 (274)
Q Consensus 64 ~s~~lf~vgnl~~~~~~~~~p~~~~~t~~~L~----~~F~~~l~~~~G~v~~v~i~~~~~g~srgfgFV~f~~~e~a~~a 139 (274)
.+.+|| |||||. ++++++|+ ++|+++ |.|.+|.+. .++++||||||+|.+.++|++|
T Consensus 28 p~~~Lf-V~nL~~-----------~~~e~~L~~~L~~~F~~~-----G~I~~v~i~--~~~~~rG~aFV~F~~~~~A~~A 88 (127)
T 2a3j_A 28 PSQVVL-ITNINP-----------EVPKEKLQALLYALASSQ-----GDILDIVVD--LSDDNSGKAYIVFATQESAQAF 88 (127)
T ss_dssp CCSEEE-EESCCT-----------TSCHHHHHHHHHHHHHHH-----SCEEEEEEC--CCCSSCCCEEEEESSHHHHHHH
T ss_pred CCCEEE-EeCCCC-----------CCCHHHHHHHHHHHhccC-----CCeEEEEec--cCCCcCCEEEEEECCHHHHHHH
Confidence 467799 999999 69999876 689977 999887765 5789999999999999999666
Q ss_pred H-CCCCc
Q 024012 140 T-GVPGV 145 (274)
Q Consensus 140 ~-~~~g~ 145 (274)
+ .|||.
T Consensus 89 i~~lng~ 95 (127)
T 2a3j_A 89 VEAFQGY 95 (127)
T ss_dssp HHHSTTC
T ss_pred HHHHCCC
Confidence 5 67875
No 305
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.31 E-value=7.7e-12 Score=91.94 Aligned_cols=64 Identities=14% Similarity=0.184 Sum_probs=55.4
Q ss_pred CCceeeeecCCCcceeEEecCCCCCCCCHHHHHHHHHHHHHhhhCC-cccceEE-E-ecCCCCCCeEEeeeCCHHHHHHH
Q 024012 63 IGTTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGN-EKDAQMC-I-YHVSWQSNFGFCCELDDECAQEL 139 (274)
Q Consensus 63 ~~s~~lf~vgnl~~~~~~~~~p~~~~~t~~~L~~~F~~~l~~~~G~-v~~v~i~-~-~~~g~srgfgFV~f~~~e~a~~a 139 (274)
...++|| |||||. ++|+++|+++|.++ |. |.+++++ . ..+|.++|||||+|.+.++|++|
T Consensus 6 ~~~~~l~-V~nLp~-----------~~t~~~l~~~f~~~-----G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A 68 (109)
T 2dis_A 6 SGNCRLF-IGGIPK-----------MKKREEILEEIAKV-----TEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMA 68 (109)
T ss_dssp CCSEEEE-EECCCT-----------TSCHHHHHHHHHHH-----STTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHH
T ss_pred cCCCEEE-EeCCCC-----------cCCHHHHHHHHHHh-----cCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHH
Confidence 3567899 999999 69999999999988 98 9999987 3 45679999999999999999777
Q ss_pred HC-CC
Q 024012 140 TG-VP 143 (274)
Q Consensus 140 ~~-~~ 143 (274)
+. |+
T Consensus 69 ~~~l~ 73 (109)
T 2dis_A 69 RRKLM 73 (109)
T ss_dssp HTTTT
T ss_pred HHHhh
Confidence 76 53
No 306
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.30 E-value=1.3e-12 Score=95.33 Aligned_cols=65 Identities=20% Similarity=0.330 Sum_probs=57.5
Q ss_pred CceeeeecCCCcceeEEecCCCCCCCCHHHHHHHHHHHHHhhhCCcccceEEEe-cCCCCCCeEEeeeCCHHHHHHHHC-
Q 024012 64 GTTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIY-HVSWQSNFGFCCELDDECAQELTG- 141 (274)
Q Consensus 64 ~s~~lf~vgnl~~~~~~~~~p~~~~~t~~~L~~~F~~~l~~~~G~v~~v~i~~~-~~g~srgfgFV~f~~~e~a~~a~~- 141 (274)
.+++|| |+|||. ++|+++|+++|.++ |.|.+++++.+ .+|.++|||||+|.+.++|++|++
T Consensus 7 ~~~~l~-V~nlp~-----------~~~~~~l~~~f~~~-----G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~ 69 (104)
T 1p1t_A 7 SLRSVF-VGNIPY-----------EATEEQLKDIFSEV-----GPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRN 69 (104)
T ss_dssp HHSCEE-EESCCT-----------TSCHHHHHHHHHTT-----SCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHH
T ss_pred CccEEE-EeCCCC-----------cCCHHHHHHHHHhc-----CCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHH
Confidence 456799 999999 69999999999977 99999998875 578999999999999999977774
Q ss_pred CCCc
Q 024012 142 VPGV 145 (274)
Q Consensus 142 ~~g~ 145 (274)
++|.
T Consensus 70 l~g~ 73 (104)
T 1p1t_A 70 LNGR 73 (104)
T ss_dssp SSSB
T ss_pred hCCC
Confidence 7764
No 307
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.30 E-value=1.1e-12 Score=96.66 Aligned_cols=68 Identities=13% Similarity=0.209 Sum_probs=57.5
Q ss_pred CCCCceeeeecCCCcceeEEecCCCCCCCCHHHHHHHHHHHHHhhhCCcccceEEEecCCCCCCeEEeeeCCHHHHHHHH
Q 024012 61 SQIGTTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIYHVSWQSNFGFCCELDDECAQELT 140 (274)
Q Consensus 61 ~~~~s~~lf~vgnl~~~~~~~~~p~~~~~t~~~L~~~F~~~l~~~~G~v~~v~i~~~~~g~srgfgFV~f~~~e~a~~a~ 140 (274)
....+++|| |||||. ++|+++|+++|.++ |.|.+++++.+. +.++|||||+|.+.++|++|+
T Consensus 25 ~~~~~~~l~-V~nLp~-----------~~te~~l~~~F~~~-----G~i~~v~i~~~~-~~~kg~afV~f~~~~~A~~Ai 86 (109)
T 2err_A 25 NKSQPKRLH-VSNIPF-----------RFRDPDLRQMFGQF-----GKILDVEIIFNE-RGSKGFGFVTFENSADADRAR 86 (109)
T ss_dssp CTTCCCEEE-EESCCT-----------TCCHHHHHHHGGGT-----CCCSCEEECCBT-TBCTTEEEEECCCSHHHHHHH
T ss_pred CCCCCCEEE-EECCCC-----------cCCHHHHHHHHHhc-----CCEEEEEEEECC-CCCceEEEEEECCHHHHHHHH
Confidence 334667899 999999 69999999999977 999999988764 459999999999999997777
Q ss_pred C-CCCce
Q 024012 141 G-VPGVL 146 (274)
Q Consensus 141 ~-~~g~~ 146 (274)
. |+|..
T Consensus 87 ~~l~g~~ 93 (109)
T 2err_A 87 EKLHGTV 93 (109)
T ss_dssp HHHTTCE
T ss_pred HHcCCCE
Confidence 5 67653
No 308
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.30 E-value=1e-12 Score=90.36 Aligned_cols=59 Identities=17% Similarity=0.305 Sum_probs=52.8
Q ss_pred eeeecCCCcceeEEecCCCCCCCCHHHHHHHHHHHHHhhhCCcccceEEEe-cCCCCCCeEEeeeCCHHHHHHHHCC
Q 024012 67 LLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIY-HVSWQSNFGFCCELDDECAQELTGV 142 (274)
Q Consensus 67 ~lf~vgnl~~~~~~~~~p~~~~~t~~~L~~~F~~~l~~~~G~v~~v~i~~~-~~g~srgfgFV~f~~~e~a~~a~~~ 142 (274)
+|| |+|||. ++|+++|+++|+++ |.|.+++++.+ .+|.++|||||+|.+.++|++|+..
T Consensus 2 ~l~-v~nlp~-----------~~t~~~l~~~F~~~-----G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~ 61 (77)
T 1uaw_A 2 KMF-IGGLSW-----------QTTQEGLREYFGQF-----GEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQ 61 (77)
T ss_dssp CEE-EESCCS-----------SCCSHHHHHHHTTT-----SCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHT
T ss_pred EEE-EeCCCC-----------CCCHHHHHHHHHhc-----CCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHh
Confidence 588 999999 69999999999977 99999999875 5799999999999999999777753
No 309
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.29 E-value=3.3e-12 Score=92.24 Aligned_cols=57 Identities=11% Similarity=0.016 Sum_probs=50.1
Q ss_pred CCceeeeecCCCcceeEEecCCCCCCCCHHHHHHHHHHHHHhhhCCcccceEEEecCCCCCCeEEeeeCCHHHHHHHHC
Q 024012 63 IGTTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIYHVSWQSNFGFCCELDDECAQELTG 141 (274)
Q Consensus 63 ~~s~~lf~vgnl~~~~~~~~~p~~~~~t~~~L~~~F~~~l~~~~G~v~~v~i~~~~~g~srgfgFV~f~~~e~a~~a~~ 141 (274)
+.+++|| |+|||+ ++|+++|+++|.++ |.|.+++++. +||||||+|.+.++|.+|++
T Consensus 19 ~ps~~l~-V~NLp~-----------~~te~~L~~lF~~f-----G~V~~v~i~~-----~kg~AFVef~~~~~A~~Av~ 75 (100)
T 3r27_A 19 PASPVVH-IRGLID-----------GVVEADLVEALQEF-----GPISYVVVMP-----KKRQALVEFEDVLGACNAVN 75 (100)
T ss_dssp CCCSEEE-EESCCT-----------TCCHHHHHHHHGGG-----SCEEEEEEET-----TTTEEEEEESSHHHHHHHHH
T ss_pred CCCcEEE-EeCCCC-----------CCCHHHHHHHHhcc-----CCEEEEEEEc-----CCCEEEEEECCHHHHHHHHH
Confidence 3567899 999999 79999999999976 9999999873 58999999999999977764
No 310
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.28 E-value=3e-12 Score=95.54 Aligned_cols=57 Identities=14% Similarity=0.145 Sum_probs=50.6
Q ss_pred CCceeeeecCCCcceeEEecCCCCCCCCHHHHHHHHHHHHHhhhCCcccceEEEecCCCCCCeEEeeeCCHHHHHHHHC
Q 024012 63 IGTTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIYHVSWQSNFGFCCELDDECAQELTG 141 (274)
Q Consensus 63 ~~s~~lf~vgnl~~~~~~~~~p~~~~~t~~~L~~~F~~~l~~~~G~v~~v~i~~~~~g~srgfgFV~f~~~e~a~~a~~ 141 (274)
..+++|| |||||+ ++|+++|+++|.++ |.|.+|+|+.+ ||||||+|.+.++|++|++
T Consensus 29 ~ps~~Lf-VgNLp~-----------~vte~dL~~lF~~f-----G~V~~v~i~~~-----kG~AFVeF~~~e~A~~Ai~ 85 (119)
T 2ad9_A 29 VPSRVIH-IRKLPI-----------DVTEGEVISLGLPF-----GKVTNLLMLKG-----KNQAFIEMNTEEAANTMVN 85 (119)
T ss_dssp SCCSEEE-EESCCT-----------TCCHHHHHHHHTTT-----SCCCEEEEEGG-----GTEEEEECSCHHHHHHHHH
T ss_pred CCCCEEE-EeCCCC-----------CCCHHHHHHHHHhc-----CCEEEEEEeCC-----CCEEEEEECCHHHHHHHHH
Confidence 3567899 999999 79999999999977 99999998843 8999999999999977764
No 311
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.28 E-value=1.4e-12 Score=91.98 Aligned_cols=66 Identities=15% Similarity=0.201 Sum_probs=55.9
Q ss_pred CceeeeecCCCcceeEEecCCCCCCCCHHHHHHHHHHHHHhhhCCcccceEEEec-CCC-CCCeEEeeeCCHHHHHHHHC
Q 024012 64 GTTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIYH-VSW-QSNFGFCCELDDECAQELTG 141 (274)
Q Consensus 64 ~s~~lf~vgnl~~~~~~~~~p~~~~~t~~~L~~~F~~~l~~~~G~v~~v~i~~~~-~g~-srgfgFV~f~~~e~a~~a~~ 141 (274)
.+++|| |+|||. ++|+++|+++|.++ |.|.+++++.+. ++. ++|||||+|.+.++|++|+.
T Consensus 3 ~~~~l~-V~nlp~-----------~~t~~~l~~~F~~~-----G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~ 65 (88)
T 4a8x_A 3 KPTKVH-IGRLTR-----------NVTKDHIMEIFSTY-----GKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALK 65 (88)
T ss_dssp CCCEEE-EECCCT-----------TCCHHHHHHHHHTT-----SCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHH
T ss_pred CCCEEE-EeCCCC-----------CCCHHHHHHHHHhC-----CCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHH
Confidence 457799 999999 69999999999977 999999987754 344 89999999999999977776
Q ss_pred -CCCce
Q 024012 142 -VPGVL 146 (274)
Q Consensus 142 -~~g~~ 146 (274)
|+|..
T Consensus 66 ~l~g~~ 71 (88)
T 4a8x_A 66 HMDGGQ 71 (88)
T ss_dssp HHTTCE
T ss_pred HcCCCe
Confidence 67753
No 312
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.28 E-value=7.1e-12 Score=93.04 Aligned_cols=66 Identities=18% Similarity=0.194 Sum_probs=55.5
Q ss_pred CCceeeeecCCCcceeEEecCCCCCCCCHHHHHHHHHHHHHhhhCCcccceEEE-ecCCCCCCeEEeeeCCHHHHHHHHC
Q 024012 63 IGTTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCI-YHVSWQSNFGFCCELDDECAQELTG 141 (274)
Q Consensus 63 ~~s~~lf~vgnl~~~~~~~~~p~~~~~t~~~L~~~F~~~l~~~~G~v~~v~i~~-~~~g~srgfgFV~f~~~e~a~~a~~ 141 (274)
..+++|| |+|||. ++|+++|+++|.++ |.|.++.+.. ..+|.++|||||+|.+.++|++|+.
T Consensus 23 ~~~~~l~-V~nLp~-----------~~t~~~l~~~f~~~-----G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~ 85 (115)
T 2cpx_A 23 EPNKVLY-LKNLSP-----------RVTERDLVSLFARF-----QEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALH 85 (115)
T ss_dssp SCCSEEE-EECCCT-----------TCCHHHHHHHTHHH-----HHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHH
T ss_pred CCCCEEE-EeCCCC-----------CCCHHHHHHHHHHh-----CCccceEEEEEcCCCccceEEEEEECCHHHHHHHHH
Confidence 4567899 999999 69999999999988 9997765433 3489999999999999999977764
Q ss_pred -CCCc
Q 024012 142 -VPGV 145 (274)
Q Consensus 142 -~~g~ 145 (274)
|+|.
T Consensus 86 ~l~g~ 90 (115)
T 2cpx_A 86 LVNGY 90 (115)
T ss_dssp HSTTC
T ss_pred HhCCC
Confidence 7774
No 313
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.28 E-value=2.2e-12 Score=93.59 Aligned_cols=65 Identities=11% Similarity=-0.019 Sum_probs=54.6
Q ss_pred CCCCceeeeecCCCcceeEEecCCCCCCCCHHHHHHHHHHHHHhhhCCcccceEEEecCCCCCCeEEeeeCCHHHHHHHH
Q 024012 61 SQIGTTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIYHVSWQSNFGFCCELDDECAQELT 140 (274)
Q Consensus 61 ~~~~s~~lf~vgnl~~~~~~~~~p~~~~~t~~~L~~~F~~~l~~~~G~v~~v~i~~~~~g~srgfgFV~f~~~e~a~~a~ 140 (274)
....+++|| |+|||. ++|+++|+++|.++ |.| +++.+.+++++|||||+|.+.++|++|+
T Consensus 11 ~~~~~~~l~-V~nLp~-----------~~t~~~l~~~F~~~-----g~v---~~~~~~~g~~~g~afV~f~~~~~A~~A~ 70 (101)
T 2fc9_A 11 WSGESKTLV-LSNLSY-----------SATEETLQEVFEKA-----TFI---KVPQNQNGKSKGYAFIEFASFEDAKEAL 70 (101)
T ss_dssp CSCCCSEEE-EESCCT-----------TCCHHHHHHHCSSC-----SEE---ECCBCSSSCBCSEEEEECSSHHHHHHHH
T ss_pred CCCCCCEEE-EeCCCC-----------CCCHHHHHHHHHhC-----CEE---EEEECCCCCEeeEEEEEECCHHHHHHHH
Confidence 334678899 999999 69999999999966 866 5555678999999999999999997777
Q ss_pred C-CCCc
Q 024012 141 G-VPGV 145 (274)
Q Consensus 141 ~-~~g~ 145 (274)
. |+|.
T Consensus 71 ~~l~g~ 76 (101)
T 2fc9_A 71 NSCNKR 76 (101)
T ss_dssp HHTSSE
T ss_pred HHhCCC
Confidence 6 7874
No 314
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.28 E-value=6.1e-12 Score=98.78 Aligned_cols=67 Identities=15% Similarity=0.112 Sum_probs=58.9
Q ss_pred CCCceeeeecCCCcceeEEecCCCCCCCCHHHHHHHHHHHHHhhhCCcccceEEEe-cCCCCCCeEEeeeCCHHHHHHHH
Q 024012 62 QIGTTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIY-HVSWQSNFGFCCELDDECAQELT 140 (274)
Q Consensus 62 ~~~s~~lf~vgnl~~~~~~~~~p~~~~~t~~~L~~~F~~~l~~~~G~v~~v~i~~~-~~g~srgfgFV~f~~~e~a~~a~ 140 (274)
.....+|| |||||+ ++|+++|+++|.++ |.|.+++++.+ .+|.++|||||+|.+.++|++|+
T Consensus 67 ~~~~~~l~-v~nl~~-----------~~~~~~l~~~F~~~-----G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~ 129 (158)
T 2kn4_A 67 VEGMTSLK-VDNLTY-----------RTSPDTLRRVFEKY-----GRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAM 129 (158)
T ss_dssp CCBCCEEE-EESCCT-----------TCCHHHHHHHHHHH-----SCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHH
T ss_pred CCCCCEEE-EeCCCC-----------CCCHHHHHHHHHhc-----CCeEEEEEeecCCCCccceEEEEEECCHHHHHHHH
Confidence 34567899 999999 69999999999988 99999998875 58999999999999999997777
Q ss_pred -CCCCc
Q 024012 141 -GVPGV 145 (274)
Q Consensus 141 -~~~g~ 145 (274)
.|+|.
T Consensus 130 ~~l~g~ 135 (158)
T 2kn4_A 130 DAMDGA 135 (158)
T ss_dssp HHSTTE
T ss_pred HHhCCC
Confidence 47875
No 315
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.28 E-value=6.5e-12 Score=92.89 Aligned_cols=61 Identities=16% Similarity=0.144 Sum_probs=51.6
Q ss_pred Cceeeeec--CCCcceeEEecCCCCCCCCHHHHHHHHHHHHHhhhCCcccceEEEecCCCCCCeEEeeeCCHHHHHHHH-
Q 024012 64 GTTLLFPL--GTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIYHVSWQSNFGFCCELDDECAQELT- 140 (274)
Q Consensus 64 ~s~~lf~v--gnl~~~~~~~~~p~~~~~t~~~L~~~F~~~l~~~~G~v~~v~i~~~~~g~srgfgFV~f~~~e~a~~a~- 140 (274)
.+++|| | |||++ ++|+++|+++|+++ |.|.+|.|.. +||||||+|.+.++|++|+
T Consensus 24 pt~~L~-V~Ng~L~~-----------~~te~~L~~~F~~f-----G~v~~v~i~~-----~rgfaFV~f~~~~~A~~Ai~ 81 (114)
T 2cq2_A 24 ATQSLV-VANGGLGN-----------GVSRNQLLPVLEKC-----GLVDALLMPP-----NKPYSFARYRTTEESKRAYV 81 (114)
T ss_dssp CCSEEE-EETCTGGG-----------TCCHHHHHHHHHHH-----SCEEEEECCT-----TCSCEEEEESSHHHHHHHHH
T ss_pred CCCEEE-EECCCCCC-----------CCCHHHHHHHHHhc-----CCeEEEEEeC-----CCCEEEEEECCHHHHHHHHH
Confidence 467799 9 88999 69999999999988 9998887752 4899999999999996665
Q ss_pred CCCCce
Q 024012 141 GVPGVL 146 (274)
Q Consensus 141 ~~~g~~ 146 (274)
+|||..
T Consensus 82 ~lnG~~ 87 (114)
T 2cq2_A 82 TLNGKE 87 (114)
T ss_dssp HTTTCE
T ss_pred HhCCCE
Confidence 588863
No 316
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.28 E-value=2.8e-12 Score=93.15 Aligned_cols=57 Identities=16% Similarity=0.127 Sum_probs=50.1
Q ss_pred CCceeeeecCCCcceeEEecCCCCCCCCHHHHHHHHHHHHHhhhCCcccceEEEecCCCCCCeEEeeeCCHHHHHHHHC
Q 024012 63 IGTTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIYHVSWQSNFGFCCELDDECAQELTG 141 (274)
Q Consensus 63 ~~s~~lf~vgnl~~~~~~~~~p~~~~~t~~~L~~~F~~~l~~~~G~v~~v~i~~~~~g~srgfgFV~f~~~e~a~~a~~ 141 (274)
..+++|| |+|||+ ++|+++|+++|.++ |.|.+++++.. ||||||+|.+.++|++|++
T Consensus 13 ~p~~~l~-V~nLp~-----------~~te~~L~~~F~~f-----G~v~~v~i~~~-----kg~aFVef~~~~~A~~Ai~ 69 (101)
T 2cq1_A 13 APSRVLH-IRKLPG-----------EVTETEVIALGLPF-----GKVTNILMLKG-----KNQAFLELATEEAAITMVN 69 (101)
T ss_dssp SCCSEEE-EESCCT-----------TCCHHHHHHTTTTT-----SCEEEEEEETT-----TTEEEEEESSHHHHHHHHH
T ss_pred CCCCEEE-EeCCCC-----------CCCHHHHHHHHHhc-----CCEEEEEEECC-----CCEEEEEECCHHHHHHHHH
Confidence 4567899 999999 79999999999977 99999988743 8999999999999977764
No 317
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.27 E-value=2.2e-12 Score=107.73 Aligned_cols=65 Identities=11% Similarity=0.201 Sum_probs=56.9
Q ss_pred CceeeeecCCCcceeEEecCCCCCCCCHHHHHHHHHHHHHhhhC--CcccceEEEe-cCCCCCCeEEeeeCCHHHHHHHH
Q 024012 64 GTTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLG--NEKDAQMCIY-HVSWQSNFGFCCELDDECAQELT 140 (274)
Q Consensus 64 ~s~~lf~vgnl~~~~~~~~~p~~~~~t~~~L~~~F~~~l~~~~G--~v~~v~i~~~-~~g~srgfgFV~f~~~e~a~~a~ 140 (274)
..++|| |+|||+ ++|+++|+++|.++ | .|.+|+|+.+ .+|++||||||+|.+.++|++|+
T Consensus 67 ~~~~lf-VgnL~~-----------~~te~~L~~~F~~~-----G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai 129 (229)
T 3q2s_C 67 KRIALY-IGNLTW-----------WTTDEDLTEAVHSL-----GVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLM 129 (229)
T ss_dssp --CEEE-EESCCT-----------TCCHHHHHHHHHTT-----TCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHH
T ss_pred CccEEE-EeCCCC-----------CCCHHHHHHHHHHH-----CCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHH
Confidence 456799 999999 69999999999977 9 9999999886 68999999999999999998877
Q ss_pred C-CCCc
Q 024012 141 G-VPGV 145 (274)
Q Consensus 141 ~-~~g~ 145 (274)
+ |+|.
T Consensus 130 ~~lng~ 135 (229)
T 3q2s_C 130 DLLPKR 135 (229)
T ss_dssp TTSTTS
T ss_pred HHcCCC
Confidence 6 7764
No 318
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.27 E-value=8.4e-12 Score=92.96 Aligned_cols=76 Identities=14% Similarity=0.108 Sum_probs=67.8
Q ss_pred CccccEEEEcCCCCC-CCHHHHHHHHhccCCeEEEEEEecCCCCCcceEEEEEeCC-HHHHHHHHHHh--CCceeCCEEe
Q 024012 182 QIKTKKLFVTGLSFY-TSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTT-EEAASAALKEM--NGKIINGWMI 257 (274)
Q Consensus 182 ~~~~~~lfV~nLp~~-~te~~L~~~F~~fG~i~~v~i~~d~~~g~~rG~aFV~F~s-~~~A~~Ai~~l--~g~~l~G~~l 257 (274)
-.++..|||+||+.. +++++|+++|++||+|..|.+.++.. .|||+|.+ .++|.+|+.+| +|..|.|..+
T Consensus 15 ~~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~------tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~~ 88 (121)
T 1owx_A 15 EKIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAK------EGIILFKEKAKEALGKAKDANNGNLQLRNKEV 88 (121)
T ss_dssp CCCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCS------EEEEEESSCHHHHHHHHHHTTTSCBCTTSSSE
T ss_pred ccCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCC------EEEEEECCChHHHHHHHHHhhcCCcEEeCcEE
Confidence 345889999999999 99999999999999999999998763 59999999 89999999999 4788999888
Q ss_pred EEEeec
Q 024012 258 VVDVAK 263 (274)
Q Consensus 258 ~V~~a~ 263 (274)
+++...
T Consensus 89 ~~evL~ 94 (121)
T 1owx_A 89 TWEVLE 94 (121)
T ss_dssp EEEECC
T ss_pred EEEECC
Confidence 887654
No 319
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.27 E-value=2e-12 Score=91.70 Aligned_cols=62 Identities=13% Similarity=0.269 Sum_probs=53.8
Q ss_pred eeeeecCCCcceeEEecCCCCCCCCHHHHHHHHHHHHHhhhCCcccceEEEe-cCCCCCCeEEeeeCCHHHH-HHHHCCC
Q 024012 66 TLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIY-HVSWQSNFGFCCELDDECA-QELTGVP 143 (274)
Q Consensus 66 ~~lf~vgnl~~~~~~~~~p~~~~~t~~~L~~~F~~~l~~~~G~v~~v~i~~~-~~g~srgfgFV~f~~~e~a-~~a~~~~ 143 (274)
++|| |||||. ++|+++|+++|.++ |.|.+++++.+ .+|.++|||||+|.+.+ | +++..|+
T Consensus 2 ~~l~-V~nLp~-----------~~t~~~l~~~F~~~-----G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~ 63 (90)
T 2ki2_A 2 RNIY-VGNLVY-----------SATSEQVKELFSQF-----GKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLD 63 (90)
T ss_dssp EEEE-EEEECT-----------TSSHHHHTTTHHHH-----TCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSC
T ss_pred cEEE-ECCCCC-----------CCCHHHHHHHHHhc-----CCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhC
Confidence 4688 999999 69999999999988 99999998875 46999999999999999 7 5555677
Q ss_pred Cc
Q 024012 144 GV 145 (274)
Q Consensus 144 g~ 145 (274)
|.
T Consensus 64 g~ 65 (90)
T 2ki2_A 64 NT 65 (90)
T ss_dssp SS
T ss_pred CC
Confidence 75
No 320
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.26 E-value=1.8e-11 Score=88.13 Aligned_cols=64 Identities=11% Similarity=0.123 Sum_probs=53.4
Q ss_pred CCCCceeeeecCCCcceeEEecCCCCCCCCHHHHHHHHHHHHHhhhCCcccceEEEecCCCCCCeEEeeeCCHHHHHHHH
Q 024012 61 SQIGTTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIYHVSWQSNFGFCCELDDECAQELT 140 (274)
Q Consensus 61 ~~~~s~~lf~vgnl~~~~~~~~~p~~~~~t~~~L~~~F~~~l~~~~G~v~~v~i~~~~~g~srgfgFV~f~~~e~a~~a~ 140 (274)
+...+++|| |+|||. ++|+++|+++|.++ |.|. ++++ ++.++|||||+|.+.++|++|+
T Consensus 15 ~~~~~~~l~-V~nL~~-----------~~t~~~l~~~F~~~-----G~v~-~~~~---~~~~~g~afV~f~~~~~a~~A~ 73 (97)
T 2e5j_A 15 GAPLAADVY-VGNLPR-----------DARVSDLKRALREL-----GSVP-LRLT---WQGPRRRAFLHYPDSAAAQQAV 73 (97)
T ss_dssp SSCCCCEEE-EECCCT-----------TCCHHHHHHHHHHT-----TCCC-SEEE---EETTTTEEEEECSSHHHHHHHH
T ss_pred CCCCCCEEE-EeCCCC-----------cCcHHHHHHHHHhc-----CCEE-EEEE---cCCCCcEEEEEECCHHHHHHHH
Confidence 334567899 999999 69999999999988 9996 6666 3588999999999999997776
Q ss_pred -CCCCc
Q 024012 141 -GVPGV 145 (274)
Q Consensus 141 -~~~g~ 145 (274)
.|+|.
T Consensus 74 ~~l~g~ 79 (97)
T 2e5j_A 74 SCLQGL 79 (97)
T ss_dssp HHHTTC
T ss_pred HHhCCC
Confidence 55764
No 321
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.26 E-value=6.9e-12 Score=100.54 Aligned_cols=66 Identities=15% Similarity=0.052 Sum_probs=59.0
Q ss_pred CCceeeeecCCCcceeEEecCCCCCCCCHHHHHHHHHHHHHhhhCCcccceEEEecCCCCCCeEEeeeCCHHHHHHHHC-
Q 024012 63 IGTTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIYHVSWQSNFGFCCELDDECAQELTG- 141 (274)
Q Consensus 63 ~~s~~lf~vgnl~~~~~~~~~p~~~~~t~~~L~~~F~~~l~~~~G~v~~v~i~~~~~g~srgfgFV~f~~~e~a~~a~~- 141 (274)
..+++|| |+|||+ ++|+++|+++|.++ |.|.+|.|..+.+|.++|||||+|.+.++|++|++
T Consensus 86 ~~~~~l~-V~nLp~-----------~~te~~L~~~F~~~-----G~I~~v~i~~d~~g~~kG~afV~F~~~~~A~~Ai~~ 148 (177)
T 2f3j_A 86 ETGAKLL-VSNLDF-----------GVSDADIQELFAEF-----GTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQ 148 (177)
T ss_dssp TTCEEEE-EECCCS-----------CCCHHHHHHHHHHT-----SCCSEEEECCCTTSSCSCCEEEEESCHHHHHHHHHH
T ss_pred CCCCEEE-EeCCCC-----------CCCHHHHHHHHHhc-----CCeEEEEEEECCCCCEeeEEEEEeCCHHHHHHHHHH
Confidence 4567899 999999 69999999999987 99999999887789999999999999999977775
Q ss_pred CCCc
Q 024012 142 VPGV 145 (274)
Q Consensus 142 ~~g~ 145 (274)
++|.
T Consensus 149 lng~ 152 (177)
T 2f3j_A 149 YKGV 152 (177)
T ss_dssp STTC
T ss_pred hCCC
Confidence 7775
No 322
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.25 E-value=6.2e-12 Score=92.55 Aligned_cols=62 Identities=19% Similarity=0.299 Sum_probs=53.7
Q ss_pred CCCCceeeeecCCCcceeEEecCCCCCCCCHHHHHHHHHHHHHhhhCCcccceEEEecCCCCCCeEEeeeCCHHHHHHHH
Q 024012 61 SQIGTTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIYHVSWQSNFGFCCELDDECAQELT 140 (274)
Q Consensus 61 ~~~~s~~lf~vgnl~~~~~~~~~p~~~~~t~~~L~~~F~~~l~~~~G~v~~v~i~~~~~g~srgfgFV~f~~~e~a~~a~ 140 (274)
....+++|| |||||. ++|+++|+++|.++ |.|.+++++ +|||||+|.+.++|++|+
T Consensus 27 ~~~~~~~l~-V~nLp~-----------~~t~~~L~~~F~~~-----G~i~~v~i~-------kg~afV~f~~~~~A~~Ai 82 (108)
T 2jvo_A 27 GELSNTRLF-VRPFPL-----------DVQESELNEIFGPF-----GPMKEVKIL-------NGFAFVEFEEAESAAKAI 82 (108)
T ss_dssp -CCSCSEEE-ECSSCT-----------TCCHHHHHHHHTTT-----SCCCEEEEE-------TTEEEEECSSHHHHHHHH
T ss_pred CCCCCCEEE-EECCCC-----------CCCHHHHHHHHHhc-----CCEEEEEEE-------CCEEEEEECCHHHHHHHH
Confidence 445678899 999999 69999999999977 999999988 899999999999997776
Q ss_pred C-CCCce
Q 024012 141 G-VPGVL 146 (274)
Q Consensus 141 ~-~~g~~ 146 (274)
. |+|..
T Consensus 83 ~~l~g~~ 89 (108)
T 2jvo_A 83 EEVHGKS 89 (108)
T ss_dssp HHHTTCE
T ss_pred HHcCCCE
Confidence 5 67753
No 323
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.25 E-value=6.3e-12 Score=98.57 Aligned_cols=66 Identities=17% Similarity=0.223 Sum_probs=58.1
Q ss_pred CCceeeeecCCCcceeEEecCCCCCCCCHHHHHHHHHHHHHhhhCCcccceEEEe-cCCCCCCeEEeeeCCHHHHHHHHC
Q 024012 63 IGTTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIY-HVSWQSNFGFCCELDDECAQELTG 141 (274)
Q Consensus 63 ~~s~~lf~vgnl~~~~~~~~~p~~~~~t~~~L~~~F~~~l~~~~G~v~~v~i~~~-~~g~srgfgFV~f~~~e~a~~a~~ 141 (274)
..+++|| |+|||. ++|+++|+++|.++ |.|.+|+|+.+ .++.++|||||+|.+.++|++|++
T Consensus 37 ~~~~~l~-V~nlp~-----------~~t~~~l~~~F~~~-----G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~ 99 (156)
T 1h2v_Z 37 KKSCTLY-VGNLSF-----------YTTEEQIYELFSKS-----GDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMR 99 (156)
T ss_dssp TTCCEEE-EESCCT-----------TCCHHHHHHHHGGG-----SCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHH
T ss_pred CCCCEEE-EeCCCC-----------CCCHHHHHHHHHhc-----CCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHH
Confidence 4567899 999999 69999999999977 99999998875 468899999999999999977776
Q ss_pred -CCCc
Q 024012 142 -VPGV 145 (274)
Q Consensus 142 -~~g~ 145 (274)
|+|.
T Consensus 100 ~l~g~ 104 (156)
T 1h2v_Z 100 YINGT 104 (156)
T ss_dssp HTTTS
T ss_pred HhCCC
Confidence 7775
No 324
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.24 E-value=3.1e-12 Score=95.05 Aligned_cols=60 Identities=12% Similarity=0.182 Sum_probs=50.7
Q ss_pred CceeeeecCCCcceeEEecCCCCCCCCHHHHHHHHHHHHHhhhCCcccceEEE-ecC---CCCCCeEEeeeCCHHHHHHH
Q 024012 64 GTTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCI-YHV---SWQSNFGFCCELDDECAQEL 139 (274)
Q Consensus 64 ~s~~lf~vgnl~~~~~~~~~p~~~~~t~~~L~~~F~~~l~~~~G~v~~v~i~~-~~~---g~srgfgFV~f~~~e~a~~a 139 (274)
.+++|| |||||+ ++|+++|+++|.++ |.|. ++++. ..+ |+++|||||+|.+.++|++|
T Consensus 7 ~~~~lf-VgnLp~-----------~~te~~L~~~F~~~-----G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~A 68 (114)
T 2dnl_A 7 GSRKVF-VGGLPP-----------DIDEDEITASFRRF-----GPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQAL 68 (114)
T ss_dssp CCCCEE-EECCCT-----------TCCHHHHHHHTTTT-----CCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHH
T ss_pred CCCEEE-EcCCCC-----------CCCHHHHHHHHHhc-----CCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHH
Confidence 467799 999999 69999999999977 9998 66554 334 79999999999999999666
Q ss_pred HC
Q 024012 140 TG 141 (274)
Q Consensus 140 ~~ 141 (274)
++
T Consensus 69 i~ 70 (114)
T 2dnl_A 69 ID 70 (114)
T ss_dssp HH
T ss_pred HH
Confidence 53
No 325
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.24 E-value=9.7e-12 Score=90.83 Aligned_cols=57 Identities=12% Similarity=0.040 Sum_probs=50.0
Q ss_pred CCceeeeecCCCcceeEEecCCCCCCCCHHHHHHHHHHHHHhhhCCcccceEEEecCCCCCCeEEeeeCCHHHHHHHHC
Q 024012 63 IGTTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIYHVSWQSNFGFCCELDDECAQELTG 141 (274)
Q Consensus 63 ~~s~~lf~vgnl~~~~~~~~~p~~~~~t~~~L~~~F~~~l~~~~G~v~~v~i~~~~~g~srgfgFV~f~~~e~a~~a~~ 141 (274)
..+++|| |+|||. ++|+++|+++|.++ |.|.+++|+. .||||||+|.+.++|++|++
T Consensus 13 ~p~~~l~-V~nLp~-----------~~te~~L~~~F~~f-----G~V~~v~i~~-----~kg~aFVef~~~~~A~~Ai~ 69 (104)
T 1wex_A 13 SVSPVVH-VRGLCE-----------SVVEADLVEALEKF-----GTICYVMMMP-----FKRQALVEFENIDSAKECVT 69 (104)
T ss_dssp CCCSEEE-EESCCS-----------SCCHHHHHHHHTTT-----SCEEEEEEET-----TTTEEEEEESSHHHHHHHHH
T ss_pred CCCCEEE-EeCCCC-----------CCCHHHHHHHHHhC-----CCEEEEEEEC-----CCCEEEEEECCHHHHHHHHH
Confidence 4567899 999999 79999999999977 9999998873 38999999999999977764
No 326
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.23 E-value=7.8e-12 Score=90.00 Aligned_cols=63 Identities=16% Similarity=0.178 Sum_probs=52.9
Q ss_pred CCCceeeeecCCCcceeEEecCCCCCCCCHHHHHHHHHHHHHhhhCCcccceEEEecCCCCCCeEEeeeCCHHHHHHHHC
Q 024012 62 QIGTTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIYHVSWQSNFGFCCELDDECAQELTG 141 (274)
Q Consensus 62 ~~~s~~lf~vgnl~~~~~~~~~p~~~~~t~~~L~~~F~~~l~~~~G~v~~v~i~~~~~g~srgfgFV~f~~~e~a~~a~~ 141 (274)
...+++|| |+|||. ++|+++|+++|.++ |.|.++++... +|||||+|.+.++|++|++
T Consensus 14 ~~~~~~l~-V~nlp~-----------~~t~~~l~~~F~~~-----G~v~~v~~~~~-----~g~afV~f~~~~~A~~A~~ 71 (97)
T 1why_A 14 ANPTTRLW-VGGLGP-----------NTSLAALAREFDRF-----GSIRTIDHVKG-----DSFAYIQYESLDAAQAACA 71 (97)
T ss_dssp CCCCSCEE-EECCCS-----------SCCHHHHHHHHHTT-----SCEEEEEECSS-----SCCEEEEESSHHHHHHHHH
T ss_pred CCCCCEEE-EeCCCC-----------CCCHHHHHHHHHhc-----CCeeEEEEeCC-----CCEEEEEECCHHHHHHHHH
Confidence 34567899 999999 69999999999977 99999887632 8999999999999977765
Q ss_pred -CCCce
Q 024012 142 -VPGVL 146 (274)
Q Consensus 142 -~~g~~ 146 (274)
|+|..
T Consensus 72 ~l~g~~ 77 (97)
T 1why_A 72 KMRGFP 77 (97)
T ss_dssp HHTTCB
T ss_pred HHCCCE
Confidence 67653
No 327
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.23 E-value=1.1e-11 Score=91.14 Aligned_cols=61 Identities=8% Similarity=-0.042 Sum_probs=52.7
Q ss_pred CCceeeeecCCCcceeEEecCCCCCCCCHHHHHHHHHHHHHhhhCCcccceEEEecCCCCCCeEEeeeCCHHHHHHHHC-
Q 024012 63 IGTTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIYHVSWQSNFGFCCELDDECAQELTG- 141 (274)
Q Consensus 63 ~~s~~lf~vgnl~~~~~~~~~p~~~~~t~~~L~~~F~~~l~~~~G~v~~v~i~~~~~g~srgfgFV~f~~~e~a~~a~~- 141 (274)
....+|| |+|||+ ++|+++|+++|.++ |.|.+|+|+.+ |||||+|.+.++|++|++
T Consensus 13 ~~~~~l~-V~nLp~-----------~~t~~~l~~~F~~~-----G~i~~~~i~~~------g~afV~f~~~~~a~~Ai~~ 69 (108)
T 1x4c_A 13 RSENRVV-VSGLPP-----------SGSWQDLKDHMREA-----GDVCYADVYRD------GTGVVEFVRKEDMTYAVRK 69 (108)
T ss_dssp SCCCEEE-EESCCS-----------SCCHHHHHHHHGGG-----SCEEEEEEETT------TEEEEEESSHHHHHHHHHH
T ss_pred CCCCEEE-EeCCCC-----------CCCHHHHHHHHHhc-----CCEeEEEEecC------CEEEEEECCHHHHHHHHHH
Confidence 3467799 999999 69999999999977 99999998843 999999999999977765
Q ss_pred CCCce
Q 024012 142 VPGVL 146 (274)
Q Consensus 142 ~~g~~ 146 (274)
|||..
T Consensus 70 l~g~~ 74 (108)
T 1x4c_A 70 LDNTK 74 (108)
T ss_dssp SSSEE
T ss_pred HCcCC
Confidence 78754
No 328
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.22 E-value=9.8e-12 Score=88.18 Aligned_cols=60 Identities=20% Similarity=0.363 Sum_probs=52.5
Q ss_pred CCCceeeeecCCCcceeEEecCCCCCCCCHHHHHHHHHHHHHhhhCCcccceEEEecCCCCCCeEEeeeCCHHHHHHHH-
Q 024012 62 QIGTTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIYHVSWQSNFGFCCELDDECAQELT- 140 (274)
Q Consensus 62 ~~~s~~lf~vgnl~~~~~~~~~p~~~~~t~~~L~~~F~~~l~~~~G~v~~v~i~~~~~g~srgfgFV~f~~~e~a~~a~- 140 (274)
....++|| |+|||. ++|+++|+++|.++ |.|.+++++ +|||||+|.+.++|++|+
T Consensus 5 ~~~~~~l~-V~nlp~-----------~~t~~~l~~~F~~~-----G~i~~v~~~-------~g~afV~f~~~~~A~~A~~ 60 (90)
T 2dnq_A 5 SSGMVKLF-IGNLPR-----------EATEQEIRSLFEQY-----GKVLECDII-------KNYGFVHIEDKTAAEDAIR 60 (90)
T ss_dssp SSCCEEEE-EESCCS-----------SCCHHHHHHHHHTS-----SCEEEEEEE-------TTEEEEEESSHHHHHHHHH
T ss_pred CCCCeEEE-EeCCCC-----------CCCHHHHHHHHHhC-----CCEEEEEEE-------CCEEEEEECCHHHHHHHHH
Confidence 34678899 999999 69999999999977 999999988 899999999999997776
Q ss_pred CCCCc
Q 024012 141 GVPGV 145 (274)
Q Consensus 141 ~~~g~ 145 (274)
.++|.
T Consensus 61 ~l~g~ 65 (90)
T 2dnq_A 61 NLHHY 65 (90)
T ss_dssp HHTTC
T ss_pred HhcCC
Confidence 46764
No 329
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.22 E-value=3.2e-12 Score=94.54 Aligned_cols=69 Identities=12% Similarity=0.161 Sum_probs=57.1
Q ss_pred CCCCceeeeecCCCcceeEEecCCCCCCCCHHHHH---HHHHHHHHhhhCCcccceEEEec-C---CCCCCeEEeeeCCH
Q 024012 61 SQIGTTLLFPLGTTKHWLVRMDKPGVGVVTKAQMV---DRYAQILTKVLGNEKDAQMCIYH-V---SWQSNFGFCCELDD 133 (274)
Q Consensus 61 ~~~~s~~lf~vgnl~~~~~~~~~p~~~~~t~~~L~---~~F~~~l~~~~G~v~~v~i~~~~-~---g~srgfgFV~f~~~ 133 (274)
.....++|| |+|||+ ++|+++|+ ++|.++ |.|.+++++.+. + ++++|||||+|.+.
T Consensus 11 r~~~~~~l~-V~nLp~-----------~~~~~~l~~~~~~F~~~-----G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~ 73 (111)
T 2cpi_A 11 RVVQKNLVF-VVGLSQ-----------RLADPEVLKRPEYFGKF-----GKIHKVVINNSTSYAGSQGPSASAYVTYIRS 73 (111)
T ss_dssp CCCCSSCEE-EEEECT-----------TTCCHHHHHSTTTTTTT-----SCEEEEEEECCSSCCSSSCCCEEEEEEESSH
T ss_pred cccCCCEEE-EECCCC-----------CCCHHHHHHHHHHhhcc-----CCEEEEEEecCCCcCccCCCCeEEEEEECcH
Confidence 445677899 999999 69999999 999977 999999988654 2 35679999999999
Q ss_pred HHHHHHHC-CCCce
Q 024012 134 ECAQELTG-VPGVL 146 (274)
Q Consensus 134 e~a~~a~~-~~g~~ 146 (274)
++|++|++ |+|..
T Consensus 74 ~~A~~Ai~~lng~~ 87 (111)
T 2cpi_A 74 EDALRAIQCVNNVV 87 (111)
T ss_dssp HHHHHHHHHHTTEE
T ss_pred HHHHHHHHHhCCCE
Confidence 99977765 57753
No 330
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.22 E-value=1.6e-11 Score=86.03 Aligned_cols=61 Identities=13% Similarity=0.213 Sum_probs=52.6
Q ss_pred CCceeeeecCCCcceeEEecCCCCCCCCHHHHHHHHHHHHHhhhCCcccceEEEecCCCCCCeEEeeeCCHHHHHHHHC-
Q 024012 63 IGTTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIYHVSWQSNFGFCCELDDECAQELTG- 141 (274)
Q Consensus 63 ~~s~~lf~vgnl~~~~~~~~~p~~~~~t~~~L~~~F~~~l~~~~G~v~~v~i~~~~~g~srgfgFV~f~~~e~a~~a~~- 141 (274)
...++|| |+|||. ++|+++|+++|.++ |.|.+++++. ++|||||+|.+.++|++|+.
T Consensus 10 ~~~~~l~-V~~l~~-----------~~t~~~l~~~f~~~-----G~i~~~~~~~-----~kg~afV~f~~~~~A~~a~~~ 67 (85)
T 2ytc_A 10 KTITTLY-VGGLGD-----------TITETDLRNHFYQF-----GEIRTITVVQ-----RQQCAFIQFATRQAAEVAAEK 67 (85)
T ss_dssp SSCCCEE-EECCTT-----------TSCHHHHHHHHHTT-----SCEEEEEEEG-----GGTEEEEEESSHHHHHHHHHT
T ss_pred CCccEEE-EcCCCC-----------CCCHHHHHHHHHhC-----CCEeEEEEEC-----CCCEEEEEECCHHHHHHHHHH
Confidence 4567799 999999 69999999999977 9999999884 48999999999999977765
Q ss_pred C-CCc
Q 024012 142 V-PGV 145 (274)
Q Consensus 142 ~-~g~ 145 (274)
| +|.
T Consensus 68 l~~~~ 72 (85)
T 2ytc_A 68 SFNKL 72 (85)
T ss_dssp TTTTC
T ss_pred hcCCe
Confidence 6 664
No 331
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.21 E-value=1.7e-11 Score=88.88 Aligned_cols=62 Identities=16% Similarity=0.138 Sum_probs=53.5
Q ss_pred CCceeeeecCCCcceeEEecCCCCCCCCHHHHHHHHHHHHHhhhCCcccceEEEecCCCCCCeEEeeeCCHHHHHHHH-C
Q 024012 63 IGTTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIYHVSWQSNFGFCCELDDECAQELT-G 141 (274)
Q Consensus 63 ~~s~~lf~vgnl~~~~~~~~~p~~~~~t~~~L~~~F~~~l~~~~G~v~~v~i~~~~~g~srgfgFV~f~~~e~a~~a~-~ 141 (274)
..+++|| |||||. ++|+++|+++|.++ |.|.++++. +++|||||+|.+.++|++|+ .
T Consensus 25 ~~~~~l~-V~nlp~-----------~~~~~~l~~~f~~~-----G~i~~~~~~-----~~~g~afV~f~~~~~A~~Ai~~ 82 (101)
T 2la4_A 25 PRVTTAY-IGNIPH-----------FATEADLIPLFQNF-----GFILDFKHY-----PEKGCCFIKYDTHEQAAVCIVA 82 (101)
T ss_dssp SSCCEEE-EESCCT-----------TCCHHHHHHHHHTT-----SCCSEEEEE-----TTTTEEEEECSSHHHHHHHHHH
T ss_pred CCCCEEE-EcCCCc-----------ccCHHHHHHHHHhC-----CCEEEEEEe-----cCCCEEEEEECCHHHHHHHHHH
Confidence 4567899 999999 69999999999977 999999887 57999999999999997666 5
Q ss_pred CCCce
Q 024012 142 VPGVL 146 (274)
Q Consensus 142 ~~g~~ 146 (274)
|+|..
T Consensus 83 l~g~~ 87 (101)
T 2la4_A 83 LANFP 87 (101)
T ss_dssp HTTCE
T ss_pred hCCCe
Confidence 67653
No 332
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.21 E-value=9.5e-12 Score=98.54 Aligned_cols=66 Identities=9% Similarity=0.248 Sum_probs=57.7
Q ss_pred CCceeeeecCCCcceeEEecCCCCCCCCHHHHHHHHHHHHHhhhCCcccceEEEe-cCCCCCCeEEeeeCCHHHHHHHHC
Q 024012 63 IGTTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIY-HVSWQSNFGFCCELDDECAQELTG 141 (274)
Q Consensus 63 ~~s~~lf~vgnl~~~~~~~~~p~~~~~t~~~L~~~F~~~l~~~~G~v~~v~i~~~-~~g~srgfgFV~f~~~e~a~~a~~ 141 (274)
..+++|| |+|||. .+|+++|+++|.++ |.|.+|+|+.+ .+|.++|||||+|.+.++|++|+.
T Consensus 70 ~~~~~l~-V~nLp~-----------~~t~~~L~~~F~~~-----G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~ 132 (165)
T 1rk8_A 70 VEGWILF-VTSIHE-----------EAQEDEIQEKFCDY-----GEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKE 132 (165)
T ss_dssp C-CEEEE-EESCCT-----------TCCHHHHHHHHGGG-----SCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHH
T ss_pred CCCCEEE-EeCCCC-----------CCCHHHHHHHhhcC-----CCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHH
Confidence 4567899 999999 69999999999977 99999999885 689999999999999999977765
Q ss_pred -CCCc
Q 024012 142 -VPGV 145 (274)
Q Consensus 142 -~~g~ 145 (274)
|+|.
T Consensus 133 ~l~g~ 137 (165)
T 1rk8_A 133 ALNGA 137 (165)
T ss_dssp HHTTC
T ss_pred HhCCC
Confidence 6775
No 333
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.20 E-value=4.4e-12 Score=89.62 Aligned_cols=58 Identities=26% Similarity=0.369 Sum_probs=50.8
Q ss_pred CceeeeecCCCcceeEEecCCCCCCCCHHHHHHHHHHHHHhhhCCcccceEEEecCCCCCCeEEeeeCCHHHHHHHHCC
Q 024012 64 GTTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIYHVSWQSNFGFCCELDDECAQELTGV 142 (274)
Q Consensus 64 ~s~~lf~vgnl~~~~~~~~~p~~~~~t~~~L~~~F~~~l~~~~G~v~~v~i~~~~~g~srgfgFV~f~~~e~a~~a~~~ 142 (274)
.+++|| |||||. ++|+++|+++|.++ |.|.+++++.+ ++|||||+|.+.++|++|.+.
T Consensus 4 ~~~~l~-V~nLp~-----------~~te~~l~~~F~~~-----G~i~~v~i~~~----~~g~afV~f~~~~~a~~~~~~ 61 (88)
T 1wf0_A 4 GSSGVF-VGRCTG-----------DMTEDELREFFSQY-----GDVMDVFIPKP----FRAFAFVTFADDQIAQSLCGE 61 (88)
T ss_dssp CCCEEE-EESCCS-----------SSCHHHHHHHSTTT-----SCCCEEECCSS----CCSCCEEECSCHHHHHHTTTC
T ss_pred CCcEEE-EeCCCC-----------CCCHHHHHHHHHHc-----CCeeEEEEecC----CCCEEEEEECCHHHHHHHhcC
Confidence 467899 999999 69999999999977 99999998743 899999999999999876543
No 334
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.20 E-value=2.2e-11 Score=87.12 Aligned_cols=63 Identities=13% Similarity=0.073 Sum_probs=52.8
Q ss_pred CCceeeeecCCCcceeEEecCCCCCCCCHHHHHHHHHHHHHhhhCCcccceEEEecCCCCCCeEEeeeCCHHHHHHHHCC
Q 024012 63 IGTTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIYHVSWQSNFGFCCELDDECAQELTGV 142 (274)
Q Consensus 63 ~~s~~lf~vgnl~~~~~~~~~p~~~~~t~~~L~~~F~~~l~~~~G~v~~v~i~~~~~g~srgfgFV~f~~~e~a~~a~~~ 142 (274)
..+++|| |||||+ ++|+++|+++|.++ |.|.+| +....+|+ ||||+|.+.++|++|+.|
T Consensus 6 ~~~~~l~-V~nl~~-----------~~t~~~l~~~F~~~-----G~v~~v-~~~~~~g~---~afV~f~~~~~a~~ai~l 64 (94)
T 2e5g_A 6 SGLRSVF-VSGFPR-----------GVDSAQLSEYFLAF-----GPVASV-VMDKDKGV---FAIVEMGDVGAREAVLSQ 64 (94)
T ss_dssp TTCCEEE-EECCCT-----------TCCHHHHHHHGGGT-----SCEEEE-EECSSSCC---EEEEEESSHHHHHHHHTC
T ss_pred CCCCEEE-EECCCC-----------CCCHHHHHHHHHhc-----CCeEEE-EEcCCCCc---EEEEEECCHHHHHHHHhc
Confidence 3567899 999999 69999999999977 999987 44344554 999999999999999888
Q ss_pred CCce
Q 024012 143 PGVL 146 (274)
Q Consensus 143 ~g~~ 146 (274)
+|..
T Consensus 65 ~g~~ 68 (94)
T 2e5g_A 65 SQHS 68 (94)
T ss_dssp SCCE
T ss_pred CCeE
Confidence 8754
No 335
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.20 E-value=2.1e-11 Score=86.42 Aligned_cols=60 Identities=13% Similarity=0.248 Sum_probs=52.5
Q ss_pred CCCceeeeecCCCcceeEEecCCCCCCCCHHHHHHHHHHHHHhhhCCcccceEEEecCCCCCCeEEeeeCCHHHHHHHHC
Q 024012 62 QIGTTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIYHVSWQSNFGFCCELDDECAQELTG 141 (274)
Q Consensus 62 ~~~s~~lf~vgnl~~~~~~~~~p~~~~~t~~~L~~~F~~~l~~~~G~v~~v~i~~~~~g~srgfgFV~f~~~e~a~~a~~ 141 (274)
+..+++|| |+|||. ++|+++|+++|.++ |.|.+++++ ++||||+|.+.++|++|+.
T Consensus 6 ~~~~~~l~-V~nlp~-----------~~t~~~l~~~F~~~-----G~v~~~~~~-------~~~afV~f~~~~~a~~A~~ 61 (90)
T 2dnp_A 6 SGNTWKIF-VGNVSA-----------ACTSQELRSLFERR-----GRVIECDVV-------KDYAFVHMEKEADAKAAIA 61 (90)
T ss_dssp SCCSCCEE-EESCCT-----------TCCHHHHHHHHHHH-----SCEEEEEEC-------SSCEEEEESCHHHHHHHHH
T ss_pred CCCCCEEE-EeCCCC-----------CCCHHHHHHHHHcC-----CCEEEEEEE-------CCEEEEEECCHHHHHHHHH
Confidence 34567899 999999 69999999999988 999999987 7799999999999977765
Q ss_pred -CCCc
Q 024012 142 -VPGV 145 (274)
Q Consensus 142 -~~g~ 145 (274)
|+|.
T Consensus 62 ~l~g~ 66 (90)
T 2dnp_A 62 QLNGK 66 (90)
T ss_dssp HHTTC
T ss_pred HhCCC
Confidence 6775
No 336
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.20 E-value=2e-11 Score=86.96 Aligned_cols=61 Identities=18% Similarity=0.299 Sum_probs=52.8
Q ss_pred CCCCceeeeecCCCcceeEEecCCCCCCCCHHHHHHHHHHHHHhhhCCcccceEEEecCCCCCCeEEeeeCCHHHHHHHH
Q 024012 61 SQIGTTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIYHVSWQSNFGFCCELDDECAQELT 140 (274)
Q Consensus 61 ~~~~s~~lf~vgnl~~~~~~~~~p~~~~~t~~~L~~~F~~~l~~~~G~v~~v~i~~~~~g~srgfgFV~f~~~e~a~~a~ 140 (274)
....+++|| |+|||. ++|+++|+++|.++ |.|.+++++ ++||||+|.+.++|++|+
T Consensus 6 ~~~~~~~l~-V~nLp~-----------~~t~~~l~~~F~~~-----G~v~~v~~~-------~~~afV~f~~~~~a~~A~ 61 (92)
T 2dgt_A 6 SGKASTKLH-VGNISP-----------TCTNQELRAKFEEY-----GPVIECDIV-------KDYAFVHMERAEDAVEAI 61 (92)
T ss_dssp CCCSSEEEE-EESCCS-----------SCCHHHHHHHHHTT-----SCCCEEEEC-------SSEEEEEESCHHHHHHHH
T ss_pred CCCCCCEEE-EeCCCC-----------CCCHHHHHHHHHhc-----CCeEEEEEE-------CCEEEEEECCHHHHHHHH
Confidence 345678899 999999 69999999999977 999999987 779999999999997776
Q ss_pred -CCCCc
Q 024012 141 -GVPGV 145 (274)
Q Consensus 141 -~~~g~ 145 (274)
.|+|.
T Consensus 62 ~~l~g~ 67 (92)
T 2dgt_A 62 RGLDNT 67 (92)
T ss_dssp HHHTTE
T ss_pred HHhCCC
Confidence 46765
No 337
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=98.83 E-value=1.6e-12 Score=96.91 Aligned_cols=65 Identities=17% Similarity=0.110 Sum_probs=57.2
Q ss_pred CceeeeecCCCcceeEEecCCCCCCCCHHHHHHHHHHHHHhhhCCccc--------ceEEEe-cCCCCCCeEEeeeCCHH
Q 024012 64 GTTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKD--------AQMCIY-HVSWQSNFGFCCELDDE 134 (274)
Q Consensus 64 ~s~~lf~vgnl~~~~~~~~~p~~~~~t~~~L~~~F~~~l~~~~G~v~~--------v~i~~~-~~g~srgfgFV~f~~~e 134 (274)
.+++|| |+|||. ++|+++|+++|.++ |.|.+ ++++.+ .+|.++|||||+|.+.+
T Consensus 6 ~~~~l~-V~nLp~-----------~~t~~~l~~~F~~~-----G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~ 68 (116)
T 2lcw_A 6 DNNTIF-VQGLGE-----------NVTIESVADYFKQI-----GIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPP 68 (116)
Confidence 467799 999999 69999999999988 99998 887775 67999999999999999
Q ss_pred HHHHHHC-CCCc
Q 024012 135 CAQELTG-VPGV 145 (274)
Q Consensus 135 ~a~~a~~-~~g~ 145 (274)
+|++|+. |+|.
T Consensus 69 ~A~~Ai~~l~g~ 80 (116)
T 2lcw_A 69 SAKAAIDWFDGK 80 (116)
Confidence 9977776 6774
No 338
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.20 E-value=1.9e-11 Score=88.92 Aligned_cols=59 Identities=15% Similarity=0.254 Sum_probs=51.8
Q ss_pred CCceeeeecCCCcceeEEecCCCCCCCCHHHHHHHHHHHHHhhhCCcccceEEEecCCCCCCeEEeeeCCHHHHHHHHC-
Q 024012 63 IGTTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIYHVSWQSNFGFCCELDDECAQELTG- 141 (274)
Q Consensus 63 ~~s~~lf~vgnl~~~~~~~~~p~~~~~t~~~L~~~F~~~l~~~~G~v~~v~i~~~~~g~srgfgFV~f~~~e~a~~a~~- 141 (274)
..+++|| |+|||. ++|+++|+++|.++ |.|.+++++ +|||||+|.+.++|++|+.
T Consensus 9 ~~~~~l~-V~nl~~-----------~~t~~~l~~~F~~~-----G~i~~v~~~-------~~~afV~f~~~~~a~~A~~~ 64 (103)
T 2dgu_A 9 AKVKVLF-VRNLAN-----------TVTEEILEKAFSQF-----GKLERVKKL-------KDYAFIHFDERDGAVKAMEE 64 (103)
T ss_dssp CCCCCEE-EECCCT-----------TCCHHHHHHHHHHH-----SCEEEEEEC-------SSCEEEEESSHHHHHHHHHH
T ss_pred CCCCEEE-EeCCCC-----------CCCHHHHHHHHHhc-----CCEEEEEEE-------CCEEEEEeCCHHHHHHHHHH
Confidence 3457799 999999 69999999999988 999998887 7899999999999977776
Q ss_pred CCCc
Q 024012 142 VPGV 145 (274)
Q Consensus 142 ~~g~ 145 (274)
|+|.
T Consensus 65 l~g~ 68 (103)
T 2dgu_A 65 MNGK 68 (103)
T ss_dssp HTTE
T ss_pred HCCC
Confidence 6764
No 339
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.20 E-value=1.1e-11 Score=89.33 Aligned_cols=62 Identities=15% Similarity=0.215 Sum_probs=52.7
Q ss_pred CCCCceeeeecCCCcc-eeEEecCCCCCCCCHHHHHHHHHHHHHhhhCCcccceEEEecCCCCCCeEEeeeCCHHHHHHH
Q 024012 61 SQIGTTLLFPLGTTKH-WLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIYHVSWQSNFGFCCELDDECAQEL 139 (274)
Q Consensus 61 ~~~~s~~lf~vgnl~~-~~~~~~~p~~~~~t~~~L~~~F~~~l~~~~G~v~~v~i~~~~~g~srgfgFV~f~~~e~a~~a 139 (274)
+.+.+++|| |||||. + +|+++|+++|.++ |.|.++++. +|||||+|.+.++|++|
T Consensus 18 ~~~~~~~l~-V~nLp~~~-----------~t~~~L~~~F~~~-----G~v~~v~i~-------~g~afV~f~~~~~A~~A 73 (97)
T 2xnq_A 18 GSHMKSRLF-IGNLPLKN-----------VSKEDLFRIFSPY-----GHIMQINIK-------NAFGFIQFDNPQSVRDA 73 (97)
T ss_dssp -CCTTCEEE-EESCCSSC-----------CCHHHHHHHHGGG-----SCEEEEEEC-------SSEEEEEESSHHHHHHH
T ss_pred CCCCCCEEE-EeCCCccc-----------CCHHHHHHHHHhc-----CCEEEEEEe-------CCEEEEEECCHHHHHHH
Confidence 445678899 999997 5 9999999999977 999998884 99999999999999777
Q ss_pred HC-CCCce
Q 024012 140 TG-VPGVL 146 (274)
Q Consensus 140 ~~-~~g~~ 146 (274)
+. ++|..
T Consensus 74 i~~l~g~~ 81 (97)
T 2xnq_A 74 IEXESQEM 81 (97)
T ss_dssp HHHHTTSE
T ss_pred HHHcCCCE
Confidence 65 67753
No 340
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.19 E-value=2.8e-11 Score=85.06 Aligned_cols=65 Identities=17% Similarity=0.257 Sum_probs=52.8
Q ss_pred CceeeeecCCCcceeEEecCCCCCCCCHHHHHHHHHHHHHhhhC-------CcccceEEEecCCCCCCeEEeeeCCHHHH
Q 024012 64 GTTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLG-------NEKDAQMCIYHVSWQSNFGFCCELDDECA 136 (274)
Q Consensus 64 ~s~~lf~vgnl~~~~~~~~~p~~~~~t~~~L~~~F~~~l~~~~G-------~v~~v~i~~~~~g~srgfgFV~f~~~e~a 136 (274)
.+++|| |||||+ ++|+++|+++|.++.. ..| .|.++++. +++|||||+|.+.++|
T Consensus 5 ~~~~l~-V~nLp~-----------~~t~~~l~~~F~~~~~-~~g~~~~~~~~v~~~~~~-----~~kg~afV~f~~~~~a 66 (87)
T 2hzc_A 5 SARRLY-VGNIPF-----------GITEEAMMDFFNAQMR-LGGLTQAPGNPVLAVQIN-----QDKNFAFLEFRSVDET 66 (87)
T ss_dssp GGGEEE-EESCCT-----------TCCHHHHHHHHHHHHH-HTTCCSSSSCSEEEEEEC-----SSSSEEEEEESSHHHH
T ss_pred CCCEEE-EeCCCC-----------CCCHHHHHHHHHHHhh-hcccccCCCCcceEEEec-----CCCcEEEEEcCCHHHH
Confidence 567899 999999 6999999999998742 226 67666655 3499999999999999
Q ss_pred HHHHCCCCce
Q 024012 137 QELTGVPGVL 146 (274)
Q Consensus 137 ~~a~~~~g~~ 146 (274)
++|+.++|..
T Consensus 67 ~~A~~l~g~~ 76 (87)
T 2hzc_A 67 TQAMAFDGII 76 (87)
T ss_dssp HHHGGGTTCE
T ss_pred HHHHhcCCCE
Confidence 8888888864
No 341
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.19 E-value=1.7e-11 Score=87.51 Aligned_cols=59 Identities=17% Similarity=0.242 Sum_probs=49.3
Q ss_pred CCceeeeecCCCcceeEEecCCCCCCCCHHHHHHHHHHHHHhhhCC-cccceEEEecCCCCCCeEEeeeCCHHHHHHHHC
Q 024012 63 IGTTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGN-EKDAQMCIYHVSWQSNFGFCCELDDECAQELTG 141 (274)
Q Consensus 63 ~~s~~lf~vgnl~~~~~~~~~p~~~~~t~~~L~~~F~~~l~~~~G~-v~~v~i~~~~~g~srgfgFV~f~~~e~a~~a~~ 141 (274)
..+++|| |+|||. ++|+++|+++|.++ |. |..+.+. ++|||||+|.+.++|++|+.
T Consensus 6 ~~~~~l~-V~nLp~-----------~~t~~~l~~~F~~~-----G~vv~~~~~~------~~g~afV~f~~~~~A~~A~~ 62 (93)
T 2cqh_A 6 SGMNKLY-IGNLSP-----------AVTADDLRQLFGDR-----KLPLAGQVLL------KSGYAFVDYPDQNWAIRAIE 62 (93)
T ss_dssp CCCCCEE-EECCCT-----------TCCHHHHHHHHHHT-----TCCCSSCEEE------ETTEEEECCSCHHHHHHHHH
T ss_pred CCCcEEE-EeCCCC-----------CCCHHHHHHHHHHc-----CCceEEEEEc------CCCEEEEEECCHHHHHHHHH
Confidence 4567899 999999 69999999999987 99 5555553 48999999999999977764
Q ss_pred -CCC
Q 024012 142 -VPG 144 (274)
Q Consensus 142 -~~g 144 (274)
|+|
T Consensus 63 ~l~g 66 (93)
T 2cqh_A 63 TLSG 66 (93)
T ss_dssp HHTT
T ss_pred HccC
Confidence 777
No 342
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.19 E-value=1.1e-11 Score=95.81 Aligned_cols=66 Identities=6% Similarity=0.081 Sum_probs=55.7
Q ss_pred CceeeeecCCCcceeEEecCCCCCCCCHHHHHHHHHHHHHhhhCCcccc------eEEEecCCCCCCeEEeeeCCHHHHH
Q 024012 64 GTTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDA------QMCIYHVSWQSNFGFCCELDDECAQ 137 (274)
Q Consensus 64 ~s~~lf~vgnl~~~~~~~~~p~~~~~t~~~L~~~F~~~l~~~~G~v~~v------~i~~~~~g~srgfgFV~f~~~e~a~ 137 (274)
.+++|| |||||+ ++|+++|+++|.++ |.|.++ .+....+|+++|||||+|.+.++|.
T Consensus 44 ~~~~l~-V~nLp~-----------~~te~~L~~~F~~~-----G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~ 106 (143)
T 3egn_A 44 PNCRIY-VKNLAK-----------HVQEKDLKYIFGRY-----VDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAA 106 (143)
T ss_dssp CCSEEE-EEEECT-----------TCCHHHHHHHHGGG-----CCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHH
T ss_pred CCCEEE-EeCCCC-----------CCCHHHHHHHHHHh-----CCcccccccceeeEEeccCCCcccEEEEEeCCHHHHH
Confidence 457799 999999 69999999999977 999886 2333578999999999999999997
Q ss_pred HHHC-CCCce
Q 024012 138 ELTG-VPGVL 146 (274)
Q Consensus 138 ~a~~-~~g~~ 146 (274)
+|+. |||..
T Consensus 107 ~Ai~~lng~~ 116 (143)
T 3egn_A 107 KALKEANGYV 116 (143)
T ss_dssp HHHHHHTTBE
T ss_pred HHHHHhCCCE
Confidence 7766 78753
No 343
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.19 E-value=3.4e-12 Score=91.81 Aligned_cols=65 Identities=9% Similarity=0.119 Sum_probs=55.4
Q ss_pred CCceeeeecCCCcceeEEecCCCCCCCCHHHHH----HHHHHHHHhhhCCcccceEEEecCCCCCCeEEeeeCCHHHHHH
Q 024012 63 IGTTLLFPLGTTKHWLVRMDKPGVGVVTKAQMV----DRYAQILTKVLGNEKDAQMCIYHVSWQSNFGFCCELDDECAQE 138 (274)
Q Consensus 63 ~~s~~lf~vgnl~~~~~~~~~p~~~~~t~~~L~----~~F~~~l~~~~G~v~~v~i~~~~~g~srgfgFV~f~~~e~a~~ 138 (274)
..+++|| |+|||. ++|+++|+ ++|.++ |.|.++++. .+|.++|||||+|.+.++|++
T Consensus 6 ~~~~~l~-V~nLp~-----------~~~~~~l~~~l~~~f~~~-----G~i~~v~i~--~~~~~~g~afV~f~~~~~A~~ 66 (97)
T 1nu4_A 6 RPNHTIY-INNLNE-----------KIKKDELKKSLHAIFSRF-----GQILDILVS--RSLKMRGQAFVIFKEVSSATN 66 (97)
T ss_dssp CCCSEEE-EESCCT-----------TSCHHHHHHHHHHHHGGG-----SCEEEEECC--HHHHHTTCEEEEESSHHHHHH
T ss_pred CCCCEEE-EeCCCC-----------CCCHHHHHHHHHHHHHhC-----CCEEEEEEE--cCCCcCcEEEEEeCCHHHHHH
Confidence 3567899 999999 69999999 888866 999988877 578899999999999999977
Q ss_pred HHC-CCCce
Q 024012 139 LTG-VPGVL 146 (274)
Q Consensus 139 a~~-~~g~~ 146 (274)
|+. |+|..
T Consensus 67 A~~~l~g~~ 75 (97)
T 1nu4_A 67 ALRSMQGFP 75 (97)
T ss_dssp HHHHHTTCE
T ss_pred HHHHhCCCE
Confidence 764 67753
No 344
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=99.19 E-value=3.5e-11 Score=99.77 Aligned_cols=68 Identities=21% Similarity=0.329 Sum_probs=61.6
Q ss_pred CCHHHHHHHHhccCCeEEEEEEecCC----CCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEeEEEeecC
Q 024012 197 TSEKTLRAAFEGFGELVEVKIIMDKI----SKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVDVAKT 264 (274)
Q Consensus 197 ~te~~L~~~F~~fG~i~~v~i~~d~~----~g~~rG~aFV~F~s~~~A~~Ai~~l~g~~l~G~~l~V~~a~~ 264 (274)
-.+++|++.|++||.|.++.|+++.. ++.++|++||+|.+.++|.+|++.|||+.++||.|.+.|+..
T Consensus 141 e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~~~ 212 (222)
T 3dxb_A 141 DLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYDQ 212 (222)
T ss_dssp THHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECCH
T ss_pred HHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEcCH
Confidence 35689999999999999999996643 458999999999999999999999999999999999999764
No 345
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.19 E-value=7.8e-12 Score=90.89 Aligned_cols=56 Identities=13% Similarity=0.029 Sum_probs=49.1
Q ss_pred CceeeeecCCCcc-eeEEecCCCCCCCCHHHHHHHHHHHHHhhhCCcccceEEEecCCCCCCeEEeeeCCHHHHHHHHC
Q 024012 64 GTTLLFPLGTTKH-WLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIYHVSWQSNFGFCCELDDECAQELTG 141 (274)
Q Consensus 64 ~s~~lf~vgnl~~-~~~~~~~p~~~~~t~~~L~~~F~~~l~~~~G~v~~v~i~~~~~g~srgfgFV~f~~~e~a~~a~~ 141 (274)
.+++|| |||||+ . +|+++|+++|.++ |.|.+|+|+. .+|||||+|.+.++|++|++
T Consensus 14 p~~~l~-V~nLp~~~-----------~te~dL~~lF~~f-----G~V~~v~i~~-----~kg~aFVef~~~~~A~~Ai~ 70 (102)
T 1x4d_A 14 TRRVVH-IMDFQRGK-----------NLRYQLLQLVEPF-----GVISNHLILN-----KINEAFIEMATTEDAQAAVD 70 (102)
T ss_dssp CCCEEE-EESCCCSS-----------SHHHHHHTTTGGG-----SCEEEEEECS-----SSSCEEEEESSHHHHHHHHH
T ss_pred CCCEEE-EeCCCCCc-----------CCHHHHHHHHHhc-----CCEEEEEEEc-----CCCEEEEEECCHHHHHHHHH
Confidence 567899 999999 5 9999999999977 9999999874 37999999999999976654
No 346
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.19 E-value=2.3e-11 Score=89.45 Aligned_cols=61 Identities=15% Similarity=0.197 Sum_probs=53.3
Q ss_pred CCceeeeecCCCcceeEEecCCCCCCCCHHHHHHHHHHHHHhhhCCcccceEEEecCCCCCCeEEeeeCCHHHHHHHH-C
Q 024012 63 IGTTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIYHVSWQSNFGFCCELDDECAQELT-G 141 (274)
Q Consensus 63 ~~s~~lf~vgnl~~~~~~~~~p~~~~~t~~~L~~~F~~~l~~~~G~v~~v~i~~~~~g~srgfgFV~f~~~e~a~~a~-~ 141 (274)
...++|| |+|||. ++|+++|+++|.++ |.|.+|+++.+ +|||||+|.+.++|++|+ .
T Consensus 23 ~~~~~l~-V~nl~~-----------~~t~~~l~~~F~~~-----G~i~~v~i~~~-----~g~afV~f~~~~~a~~A~~~ 80 (109)
T 1x4g_A 23 PKNCTVY-CGGIAS-----------GLTDQLMRQTFSPF-----GQIMEIRVFPE-----KGYSFVRFSTHESAAHAIVS 80 (109)
T ss_dssp SSCCEEE-EECCSS-----------CCCHHHHHHHHHHH-----SCEEEEEEETT-----TTEEEEEESSHHHHHHHHHH
T ss_pred CCCcEEE-EeCCCC-----------CCCHHHHHHHHHhc-----CCeEEEEEeCC-----CCEEEEEECCHHHHHHHHHH
Confidence 4567899 999999 69999999999988 99999998854 899999999999997776 5
Q ss_pred CCCc
Q 024012 142 VPGV 145 (274)
Q Consensus 142 ~~g~ 145 (274)
|+|.
T Consensus 81 l~g~ 84 (109)
T 1x4g_A 81 VNGT 84 (109)
T ss_dssp HTTC
T ss_pred cCCC
Confidence 6775
No 347
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.19 E-value=1.6e-11 Score=88.74 Aligned_cols=62 Identities=16% Similarity=0.235 Sum_probs=52.9
Q ss_pred CCCceeeeecCCCcceeEEecCCCCCCCCHHHHHHHHHHHHHhhhCCcccceEEEecCCCCCCeEEeeeCCHHHHHHHH-
Q 024012 62 QIGTTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIYHVSWQSNFGFCCELDDECAQELT- 140 (274)
Q Consensus 62 ~~~s~~lf~vgnl~~~~~~~~~p~~~~~t~~~L~~~F~~~l~~~~G~v~~v~i~~~~~g~srgfgFV~f~~~e~a~~a~- 140 (274)
...+++|| |+|||. ++|+++|+++|.++ |.|.++++.. ++|||||+|.+.++|++|+
T Consensus 12 ~~~~~~l~-V~nlp~-----------~~t~~~l~~~F~~~-----G~i~~v~~~~-----~kg~afV~f~~~~~a~~a~~ 69 (99)
T 2cpj_A 12 FTQRSRLF-VGNLPP-----------DITEEEMRKLFEKY-----GKAGEVFIHK-----DKGFGFIRLETRTLAEIAKV 69 (99)
T ss_dssp CCCTTEEE-EESCCT-----------TCCHHHHHHHTSTT-----CCCSEEEEET-----TTTEEEEECSSSHHHHHHHH
T ss_pred CCCCCEEE-EeCCCC-----------CCCHHHHHHHHhhc-----CCeEEEEEec-----CCCEEEEEECCHHHHHHHHH
Confidence 34567899 999999 69999999999977 9999998873 3899999999999997776
Q ss_pred CCCCc
Q 024012 141 GVPGV 145 (274)
Q Consensus 141 ~~~g~ 145 (274)
.|+|.
T Consensus 70 ~l~g~ 74 (99)
T 2cpj_A 70 ELDNM 74 (99)
T ss_dssp HHTTC
T ss_pred HhCCC
Confidence 55664
No 348
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.18 E-value=2.4e-11 Score=89.54 Aligned_cols=61 Identities=15% Similarity=0.313 Sum_probs=52.7
Q ss_pred CCCceeeeecCCCcceeEEecCCCCCC-CCHHHHHHHHHHHHHhhhCCcccceEEEecCCCCCCeEEeeeCCHHHHHHHH
Q 024012 62 QIGTTLLFPLGTTKHWLVRMDKPGVGV-VTKAQMVDRYAQILTKVLGNEKDAQMCIYHVSWQSNFGFCCELDDECAQELT 140 (274)
Q Consensus 62 ~~~s~~lf~vgnl~~~~~~~~~p~~~~-~t~~~L~~~F~~~l~~~~G~v~~v~i~~~~~g~srgfgFV~f~~~e~a~~a~ 140 (274)
...+++|| |+|||. + +|+++|+++|.++ |.|.+|++ ++|||||+|.+.++|++|+
T Consensus 24 ~~~~~~l~-V~nl~~-----------~~~t~~~l~~~F~~~-----G~v~~v~i-------~~g~afV~f~~~~~A~~A~ 79 (110)
T 1wf1_A 24 KSINSRVF-IGNLNT-----------ALVKKSDVETIFSKY-----GRVAGCSV-------HKGYAFVQYSNERHARAAV 79 (110)
T ss_dssp TTCSSEEE-ECSCCC-----------SSCCHHHHHHHHGGG-----SCCSEEEE-------ETTEEEEECSSSHHHHHHH
T ss_pred CCCCcEEE-EeCCCc-----------ccCCHHHHHHHHHhC-----CCeEEEEE-------eCCEEEEEECCHHHHHHHH
Confidence 34557899 999999 7 9999999999977 99999988 4999999999999997776
Q ss_pred -CCCCce
Q 024012 141 -GVPGVL 146 (274)
Q Consensus 141 -~~~g~~ 146 (274)
.|+|..
T Consensus 80 ~~l~g~~ 86 (110)
T 1wf1_A 80 LGENGRV 86 (110)
T ss_dssp HHHTTCE
T ss_pred HHcCCCE
Confidence 667753
No 349
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.18 E-value=2.5e-11 Score=94.50 Aligned_cols=64 Identities=14% Similarity=0.134 Sum_probs=55.1
Q ss_pred CCCCceeeeecCCCcceeEEecCCCCCCCCHHHHHHHHHHHHHhhhCCcccceEEEecCCCCCCeEEeeeCCHHHHHHHH
Q 024012 61 SQIGTTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIYHVSWQSNFGFCCELDDECAQELT 140 (274)
Q Consensus 61 ~~~~s~~lf~vgnl~~~~~~~~~p~~~~~t~~~L~~~F~~~l~~~~G~v~~v~i~~~~~g~srgfgFV~f~~~e~a~~a~ 140 (274)
.....++|| |||||. ++|+++|+++|.++ |.|.+++++.+ ++|||||+|.+.++|++|+
T Consensus 69 ~~~~~~~l~-V~nl~~-----------~~t~~~l~~~F~~~-----G~i~~v~i~~~----~~g~afV~f~~~~~a~~A~ 127 (150)
T 2i2y_A 69 SCPLDCKVY-VGNLGN-----------NGNKTELERAFGYY-----GPLRSVWVARN----PPGFAFVEFEDPRDAADAV 127 (150)
T ss_dssp SSTTSCEEE-EESCCS-----------CCSCHHHHHHHHHH-----SCEEEEEECSS----SCSEEEEEESSHHHHHHHH
T ss_pred CCCCCCEEE-EeCCCC-----------CCCHHHHHHHHHhh-----CCEEEEEEeeC----CCcEEEEEECCHHHHHHHH
Confidence 445667899 999999 69999999999988 99999998754 7999999999999997776
Q ss_pred C-CCCc
Q 024012 141 G-VPGV 145 (274)
Q Consensus 141 ~-~~g~ 145 (274)
. |+|.
T Consensus 128 ~~l~g~ 133 (150)
T 2i2y_A 128 RELDGR 133 (150)
T ss_dssp HHHSSS
T ss_pred HHcCCC
Confidence 5 6764
No 350
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.18 E-value=1.1e-11 Score=100.86 Aligned_cols=64 Identities=14% Similarity=0.048 Sum_probs=57.6
Q ss_pred CceeeeecCCCcceeEEecCCCCCCCCHHHHHHHHHHHHHhhhCCcccceEEEecCCCCCCeEEeeeCCHHHHHHHHCCC
Q 024012 64 GTTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIYHVSWQSNFGFCCELDDECAQELTGVP 143 (274)
Q Consensus 64 ~s~~lf~vgnl~~~~~~~~~p~~~~~t~~~L~~~F~~~l~~~~G~v~~v~i~~~~~g~srgfgFV~f~~~e~a~~a~~~~ 143 (274)
..++|| |+|||+ ++|+++|+++|.++ |.|.+|+|..+.+|.++|||||+|.+.++|++|+++.
T Consensus 108 ~~~~l~-V~nLp~-----------~~t~~~L~~~F~~~-----G~v~~v~i~~~~~~~~kG~aFVeF~~~e~A~~A~~~~ 170 (193)
T 2voo_A 108 KNRSVY-IKGFPT-----------DATLDDIKEWLEDK-----GQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETP 170 (193)
T ss_dssp HHTEEE-EECCCT-----------TCCHHHHHHHHTTS-----CCEEEEEEEECTTCCEEEEEEEEESSHHHHHHHHHCT
T ss_pred ccCEEE-ecCCCC-----------cCCHHHHHHHHhcC-----CCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHhC
Confidence 356899 999999 79999999999977 9999999999888999999999999999998888654
Q ss_pred C
Q 024012 144 G 144 (274)
Q Consensus 144 g 144 (274)
+
T Consensus 171 ~ 171 (193)
T 2voo_A 171 G 171 (193)
T ss_dssp T
T ss_pred C
Confidence 3
No 351
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.17 E-value=2.1e-11 Score=87.55 Aligned_cols=59 Identities=15% Similarity=0.215 Sum_probs=51.3
Q ss_pred CCceeeeecCCCcc-eeEEecCCCCCCCCHHHHHHHHHHHHHhhhCCcccceEEEecCCCCCCeEEeeeCCHHHHHHHHC
Q 024012 63 IGTTLLFPLGTTKH-WLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIYHVSWQSNFGFCCELDDECAQELTG 141 (274)
Q Consensus 63 ~~s~~lf~vgnl~~-~~~~~~~p~~~~~t~~~L~~~F~~~l~~~~G~v~~v~i~~~~~g~srgfgFV~f~~~e~a~~a~~ 141 (274)
..+++|| |||||. + +|+++|+++|.++ |.|.++++. +|||||+|.+.++|++|+.
T Consensus 8 ~~~~~l~-V~nlp~~~-----------~t~~~l~~~F~~~-----G~v~~v~i~-------~g~afV~f~~~~~A~~A~~ 63 (96)
T 2kvi_A 8 PPKSRLF-IGNLPLKN-----------VSKEDLFRIFSPY-----GHIMQINIK-------NAFGFIQFDNPQSVRDAIE 63 (96)
T ss_dssp -CCEEEE-EESSTTSC-----------CCHHHHHHHHTTT-----CCCCEEEEE-------TTEEEEEESCHHHHHHHHH
T ss_pred CCCCEEE-EeCCCccc-----------CCHHHHHHHHHhc-----CCEEEEEEe-------CCEEEEEECCHHHHHHHHH
Confidence 3577899 999997 5 9999999999977 999999985 8999999999999977775
Q ss_pred -CCCc
Q 024012 142 -VPGV 145 (274)
Q Consensus 142 -~~g~ 145 (274)
|+|.
T Consensus 64 ~l~g~ 68 (96)
T 2kvi_A 64 CESQE 68 (96)
T ss_dssp HHTCS
T ss_pred HcCCC
Confidence 6764
No 352
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.16 E-value=5.5e-11 Score=83.65 Aligned_cols=74 Identities=15% Similarity=0.229 Sum_probs=62.7
Q ss_pred CccccEEEEcCCCCC-----CCH----HHHHHHHhccCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcee
Q 024012 182 QIKTKKLFVTGLSFY-----TSE----KTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKII 252 (274)
Q Consensus 182 ~~~~~~lfV~nLp~~-----~te----~~L~~~F~~fG~i~~v~i~~d~~~g~~rG~aFV~F~s~~~A~~Ai~~l~g~~l 252 (274)
.++..+|+|.-++.. +-. .+|.+.|++||+|..+++..|+ +||+|.+.++|.+||+ |||..+
T Consensus 12 GPpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~--------~fVtF~d~~sAl~AI~-ldG~~v 82 (95)
T 1ufw_A 12 GPLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ--------MLVTFADSHSALSVLD-VDGMKV 82 (95)
T ss_dssp CCTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE--------EEEECSCSHHHHHHHH-GGGSEE
T ss_pred CCCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc--------EEEEEcChHHHHHHHh-cCCeee
Confidence 345788999888643 222 5689999999999999999873 9999999999999997 999999
Q ss_pred CCEEeEEEeecC
Q 024012 253 NGWMIVVDVAKT 264 (274)
Q Consensus 253 ~G~~l~V~~a~~ 264 (274)
+||.|+|++..+
T Consensus 83 ~Gr~L~V~~k~~ 94 (95)
T 1ufw_A 83 KGRAVKISGPSS 94 (95)
T ss_dssp TTEEEEEECCCC
T ss_pred CCeEEEEeccCC
Confidence 999999998543
No 353
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.16 E-value=7.3e-12 Score=89.88 Aligned_cols=62 Identities=6% Similarity=0.009 Sum_probs=53.0
Q ss_pred CCceeeeecCCCcceeEEecCCCCCCCCHHHHHHHHHHHHHhhhCCcccceEEEecCCCCCCeEEeeeCCHHHHHHHHC-
Q 024012 63 IGTTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIYHVSWQSNFGFCCELDDECAQELTG- 141 (274)
Q Consensus 63 ~~s~~lf~vgnl~~~~~~~~~p~~~~~t~~~L~~~F~~~l~~~~G~v~~v~i~~~~~g~srgfgFV~f~~~e~a~~a~~- 141 (274)
..+++|| |+|||. ++|+++|+++|.++ |.|..+ ..+|.++|||||+|.+.++|++|+.
T Consensus 14 ~~~~~l~-V~nL~~-----------~~t~~~l~~~F~~~-----g~v~~~----~~~~~~~g~afV~f~~~~~a~~A~~~ 72 (96)
T 1fjc_A 14 RAARTLL-AKNLSF-----------NITEDELKEVFEDA-----LEIRLV----SQDGKSKGIAYIEFKSEADAEKNLEE 72 (96)
T ss_dssp TGGGEEE-EESCCS-----------SCCHHHHHHHHCSE-----EEECCE----EETTEEEEEEEEEESSHHHHHHHHHH
T ss_pred CCCCEEE-EeCCCC-----------CCCHHHHHHHHhhC-----CcEEEe----CCCCCcceEEEEEECCHHHHHHHHHH
Confidence 3567899 999999 69999999999976 877655 5789999999999999999977776
Q ss_pred CCCc
Q 024012 142 VPGV 145 (274)
Q Consensus 142 ~~g~ 145 (274)
++|.
T Consensus 73 l~g~ 76 (96)
T 1fjc_A 73 KQGA 76 (96)
T ss_dssp TTEE
T ss_pred hCCC
Confidence 7764
No 354
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.15 E-value=3.3e-11 Score=87.42 Aligned_cols=65 Identities=14% Similarity=0.136 Sum_probs=53.4
Q ss_pred CCCCceeeeecCCCcceeEEecCCCCCCCCHHHHHHHHHHHHHhhhCCcccceEEEe-cCCCCCCeEEeeeCCHHHHHHH
Q 024012 61 SQIGTTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIY-HVSWQSNFGFCCELDDECAQEL 139 (274)
Q Consensus 61 ~~~~s~~lf~vgnl~~~~~~~~~p~~~~~t~~~L~~~F~~~l~~~~G~v~~v~i~~~-~~g~srgfgFV~f~~~e~a~~a 139 (274)
+...+++|| |+|||. ++|+++|+++|.++ .+++++.+ .++.++|||||+|.+.++|++|
T Consensus 11 ~~~~~~~l~-V~nLp~-----------~~t~~~l~~~F~~~--------~~~~~~~~~~~~~~~g~afV~f~~~~~A~~A 70 (102)
T 2fc8_A 11 RSQPSKTLF-VKGLSE-----------DTTEETLKESFDGS--------VRARIVTDRETGSSKGFGFVDFNSEEDAKAA 70 (102)
T ss_dssp SSCCCSSEE-EECCCT-----------TCCHHHHHHTSTTC--------SEEEEEECSSSCSEEEEEEEECSSHHHHHHH
T ss_pred CCCCCCEEE-EeCCCC-----------ccCHHHHHHHhcCC--------eEEEEEecCCCCCcCcEEEEEECCHHHHHHH
Confidence 445677899 999999 69999999999833 36677664 6889999999999999999777
Q ss_pred HC-CCCc
Q 024012 140 TG-VPGV 145 (274)
Q Consensus 140 ~~-~~g~ 145 (274)
+. |+|.
T Consensus 71 ~~~l~g~ 77 (102)
T 2fc8_A 71 KEAMEDG 77 (102)
T ss_dssp HHHHTTC
T ss_pred HHHhCCC
Confidence 75 6775
No 355
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.14 E-value=7e-11 Score=107.59 Aligned_cols=65 Identities=12% Similarity=0.127 Sum_probs=57.9
Q ss_pred CceeeeecCCCcceeEEecCCCCCCCCHHHHHHHHHHHHHhhhCCcccceEEEe-cCCCCCCeEEeeeCCHHHHHHHH-C
Q 024012 64 GTTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIY-HVSWQSNFGFCCELDDECAQELT-G 141 (274)
Q Consensus 64 ~s~~lf~vgnl~~~~~~~~~p~~~~~t~~~L~~~F~~~l~~~~G~v~~v~i~~~-~~g~srgfgFV~f~~~e~a~~a~-~ 141 (274)
..++|| |+|||+ .+|+++|.++|.++ |.|.+|.|+.+ .+|.++|||||+|.+.++|++|+ .
T Consensus 101 ~~~~lf-V~nL~~-----------~~te~~L~~~F~~~-----G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~ 163 (437)
T 3pgw_S 101 AFKTLF-VARVNY-----------DTTESKLRREFEVY-----GPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKH 163 (437)
T ss_pred CCCEEE-EeCCCC-----------CCCHHHHHHHHHHc-----CCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHH
Confidence 456899 999999 69999999999988 99999998875 58999999999999999997776 6
Q ss_pred CCCc
Q 024012 142 VPGV 145 (274)
Q Consensus 142 ~~g~ 145 (274)
|||.
T Consensus 164 lng~ 167 (437)
T 3pgw_S 164 ADGK 167 (437)
T ss_pred cCCC
Confidence 7875
No 356
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.12 E-value=1.4e-10 Score=91.00 Aligned_cols=62 Identities=11% Similarity=-0.016 Sum_probs=51.5
Q ss_pred ceeeeecCCCcceeEEecCCCCCCCCHHHHHHHHHHHHHhhhCCcccceEEEecCCCCCCeEEeeeCCHHHHHHHH-CCC
Q 024012 65 TTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIYHVSWQSNFGFCCELDDECAQELT-GVP 143 (274)
Q Consensus 65 s~~lf~vgnl~~~~~~~~~p~~~~~t~~~L~~~F~~~l~~~~G~v~~v~i~~~~~g~srgfgFV~f~~~e~a~~a~-~~~ 143 (274)
...|| |+||++ .+|+++|+++|+++ |.|.+|+|..+ .++|||||+|.+.++|++|+ .|+
T Consensus 46 vl~l~-VgNL~~-----------~vted~L~~~Fs~f-----G~V~~V~i~~k---~~rgfAFVeF~d~~~A~~Ai~~Ln 105 (164)
T 1sjr_A 46 VLRII-VENLFY-----------PVTLDVLHQIFSKF-----GTVLKIITFTK---NNQFQALLQYADPVSAQHAKLSLD 105 (164)
T ss_dssp EEEEE-ECSCCS-----------CCCHHHHHHHHHHH-----SCEEEEEEEES---SSCEEEEEEESCHHHHHHHHHHST
T ss_pred eEEEE-EeCcCC-----------CCCHHHHHHHHHhc-----CCEEEEEEEeC---CCCCEEEEEECCHHHHHHHHHHhC
Confidence 34466 999999 69999999999988 99999998643 36899999999999995554 578
Q ss_pred Cce
Q 024012 144 GVL 146 (274)
Q Consensus 144 g~~ 146 (274)
|..
T Consensus 106 G~~ 108 (164)
T 1sjr_A 106 GQN 108 (164)
T ss_dssp TBC
T ss_pred CCE
Confidence 753
No 357
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.10 E-value=1.6e-11 Score=91.34 Aligned_cols=60 Identities=8% Similarity=-0.029 Sum_probs=50.4
Q ss_pred CceeeeecCCCcceeEEecCCCCCCCCHHHHHHHHHHHHHhhhCCcccceEEEecCCCCCCeEEeeeCCHHHHHHHHC-C
Q 024012 64 GTTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIYHVSWQSNFGFCCELDDECAQELTG-V 142 (274)
Q Consensus 64 ~s~~lf~vgnl~~~~~~~~~p~~~~~t~~~L~~~F~~~l~~~~G~v~~v~i~~~~~g~srgfgFV~f~~~e~a~~a~~-~ 142 (274)
...+|| |+|||+ ++|+++|+++|.++ |.|.+|+|+.+ |||||+|.+.++|++|++ |
T Consensus 15 ~~~~l~-V~nLp~-----------~~t~~~l~~~F~~~-----G~v~~~~i~~~------g~afV~f~~~~~a~~Ai~~l 71 (115)
T 3beg_B 15 SENRVV-VSGLPP-----------SGSWQDLKDHMREA-----GDVCYADVYRD------GTGVVEFVRKEDMTYAVRKL 71 (115)
T ss_dssp --CCEE-EEECCS-----------SCCTTHHHHHHGGG-----SCEEEEEECTT------SEEEEEESSHHHHHHHHHHH
T ss_pred CCcEEE-EeCCCC-----------CCCHHHHHHHHHhc-----CCeEEEEEecC------CEEEEEECCHHHHHHHHHHh
Confidence 456799 999999 69999999999977 99999988733 999999999999977765 7
Q ss_pred CCce
Q 024012 143 PGVL 146 (274)
Q Consensus 143 ~g~~ 146 (274)
+|..
T Consensus 72 ~g~~ 75 (115)
T 3beg_B 72 DNTK 75 (115)
T ss_dssp TTCB
T ss_pred CCCE
Confidence 7753
No 358
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.10 E-value=2.6e-11 Score=89.61 Aligned_cols=60 Identities=8% Similarity=0.004 Sum_probs=51.4
Q ss_pred CceeeeecCCCcceeEEecCCCCCCCCHHHHHHHHHHHHHhhhCCcccceEEEecCCCCCCeEEeeeCCHHHHHHHH-CC
Q 024012 64 GTTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIYHVSWQSNFGFCCELDDECAQELT-GV 142 (274)
Q Consensus 64 ~s~~lf~vgnl~~~~~~~~~p~~~~~t~~~L~~~F~~~l~~~~G~v~~v~i~~~~~g~srgfgFV~f~~~e~a~~a~-~~ 142 (274)
..++|| |+|||+ ++|+++|+++|.++ |.|.+|+|. .++|||||+|.+.++|++|+ .|
T Consensus 9 ~~~~l~-V~nLp~-----------~~te~~L~~~F~~~-----G~i~~v~i~-----~~~g~afV~f~~~~~A~~Ai~~l 66 (111)
T 1whx_A 9 SKTVIL-AKNLPA-----------GTLAAEIQETFSRF-----GSLGRVLLP-----EGGITAIVEFLEPLEARKAFRHL 66 (111)
T ss_dssp EEEEEE-EESCCT-----------TCCHHHHHHHHHTT-----SCEEEEECC-----SSSSCEEEEESCHHHHHHHHHHH
T ss_pred CCCEEE-EeCCCC-----------CCCHHHHHHHHHhc-----CCEEEEEEe-----CCCCEEEEEeCCHHHHHHHHHHh
Confidence 356788 999999 79999999999977 999888876 36899999999999997666 46
Q ss_pred CCc
Q 024012 143 PGV 145 (274)
Q Consensus 143 ~g~ 145 (274)
+|.
T Consensus 67 ~g~ 69 (111)
T 1whx_A 67 AYS 69 (111)
T ss_dssp TTC
T ss_pred CCC
Confidence 764
No 359
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.09 E-value=1.5e-10 Score=83.41 Aligned_cols=61 Identities=13% Similarity=0.201 Sum_probs=49.5
Q ss_pred CCceeeeecCCCcceeEEecCCCCCCCCHHHHHHHHHHHHHhhhCCcccceEEEecCCCCCCeEEeeeCCHHHHHHHHC-
Q 024012 63 IGTTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIYHVSWQSNFGFCCELDDECAQELTG- 141 (274)
Q Consensus 63 ~~s~~lf~vgnl~~~~~~~~~p~~~~~t~~~L~~~F~~~l~~~~G~v~~v~i~~~~~g~srgfgFV~f~~~e~a~~a~~- 141 (274)
..+++|| |+|||. ++|+++|+++|.++ ..|.|.++++. +|||||+|.+.++|++|+.
T Consensus 13 ~~~~~l~-V~nLp~-----------~~t~~~l~~~F~~~---g~g~v~~~~~~-------~g~afV~f~~~~~A~~A~~~ 70 (99)
T 2cpd_A 13 SSVKILY-VRNLML-----------STSEEMIEKEFNNI---KPGAVERVKKI-------RDYAFVHFSNREDAVEAMKA 70 (99)
T ss_dssp SCCCEEE-EESCCT-----------TCCHHHHHHHHHTT---STTCEEEEEEC-------SSEEEEEESSHHHHHHHHHH
T ss_pred CCcCEEE-EeCCCC-----------CCCHHHHHHHHHhc---CCcceEEEEEe-------CCeEEEEeCCHHHHHHHHHH
Confidence 3567899 999999 69999999999944 11667766654 8999999999999977776
Q ss_pred CCCc
Q 024012 142 VPGV 145 (274)
Q Consensus 142 ~~g~ 145 (274)
|+|.
T Consensus 71 l~g~ 74 (99)
T 2cpd_A 71 LNGK 74 (99)
T ss_dssp HSSE
T ss_pred hCCC
Confidence 7775
No 360
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.05 E-value=2.3e-10 Score=82.24 Aligned_cols=59 Identities=19% Similarity=0.162 Sum_probs=50.0
Q ss_pred CCceeeeecCCCcceeEEecCCCCCCCCHHHHHHHHHHHHHhhhCCcccceEEEecCCCCCCeEEeeeCCHHHHHHHH-C
Q 024012 63 IGTTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIYHVSWQSNFGFCCELDDECAQELT-G 141 (274)
Q Consensus 63 ~~s~~lf~vgnl~~~~~~~~~p~~~~~t~~~L~~~F~~~l~~~~G~v~~v~i~~~~~g~srgfgFV~f~~~e~a~~a~-~ 141 (274)
..+++|| |+|+ ++|+++|+++|.++ |.|.+|++. +++|||||+|.+.++|++|+ .
T Consensus 13 ~~~~~l~-V~n~-------------~~t~~~l~~~F~~~-----G~i~~v~i~-----~~~g~afV~f~~~~~a~~Ai~~ 68 (97)
T 1x5p_A 13 RKGNTLY-VYGE-------------DMTPTLLRGAFSPF-----GNIIDLSMD-----PPRNCAFVTYEKMESADQAVAE 68 (97)
T ss_dssp CCCSEEE-EECS-------------SCCHHHHHHHHTTT-----SCEEEEEEE-----TTTTEEEEEESSHHHHHHHHHH
T ss_pred CCCCEEE-EcCC-------------CCCHHHHHHHHhhC-----CCEEEEEec-----CCCCEEEEEECCHHHHHHHHHH
Confidence 4567899 9984 38999999999977 999988883 67999999999999997776 6
Q ss_pred CCCc
Q 024012 142 VPGV 145 (274)
Q Consensus 142 ~~g~ 145 (274)
|+|.
T Consensus 69 l~g~ 72 (97)
T 1x5p_A 69 LNGT 72 (97)
T ss_dssp TTTE
T ss_pred hCCC
Confidence 7775
No 361
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.05 E-value=8.3e-11 Score=87.86 Aligned_cols=50 Identities=2% Similarity=-0.044 Sum_probs=44.3
Q ss_pred eeeeecCCC----cceeEEecCCCCCCCCHHHHHHHHHHHHHhhhCCcccceEEE-ecCCCCCCeEEeeeCC
Q 024012 66 TLLFPLGTT----KHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCI-YHVSWQSNFGFCCELD 132 (274)
Q Consensus 66 ~~lf~vgnl----~~~~~~~~~p~~~~~t~~~L~~~F~~~l~~~~G~v~~v~i~~-~~~g~srgfgFV~f~~ 132 (274)
+.|| |||| |+ ++|+++|+++|+++ |+|.++.++. +.||.++|||||+|.+
T Consensus 3 ~kI~-VgnL~~~~~~-----------~tte~~Lk~~Fs~f-----GeV~~~~li~Dp~Tg~slGfgfVef~d 57 (136)
T 2j8a_A 3 CEIV-VYPAQDSTTT-----------NIQDISIKNYFKKY-----GEISHFEAFNDPNSALPLHVYLIKYAS 57 (136)
T ss_dssp CEEE-EEESSSSCCC-----------CCCHHHHHHHHHTT-----SCCSEEEEEECTTTCCEEEEEEEECC-
T ss_pred cEEE-EeCCCCCCCC-----------CCCHHHHHHHHHhc-----CCeEEEEEEecCCCCceeeEEEEEECC
Confidence 4577 9999 88 79999999999977 9999999887 5679999999999996
No 362
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.03 E-value=1.1e-10 Score=82.46 Aligned_cols=59 Identities=14% Similarity=0.063 Sum_probs=49.4
Q ss_pred CceeeeecCCCcceeEEecCCCCCCCCHHHHHHHHHHHHHhhhCCcccceEEEecCCCCCCeEEeeeCCHHHHHHHHC-C
Q 024012 64 GTTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIYHVSWQSNFGFCCELDDECAQELTG-V 142 (274)
Q Consensus 64 ~s~~lf~vgnl~~~~~~~~~p~~~~~t~~~L~~~F~~~l~~~~G~v~~v~i~~~~~g~srgfgFV~f~~~e~a~~a~~-~ 142 (274)
.+++|| |||||+ ++|+++|+++|. .+ .|.++++. +++|||||+|.+.++|++|+. |
T Consensus 4 ~~~~l~-V~nLp~-----------~~t~~~l~~~F~-----~~-~v~~~~i~-----~~~g~afV~f~~~~~a~~Ai~~l 60 (88)
T 1wg1_A 4 GSSGIL-VKNLPQ-----------DSNCQEVHDLLK-----DY-DLKYCYVD-----RNKRTAFVTLLNGEQAQNAIQMF 60 (88)
T ss_dssp CCCCEE-EESCCS-----------SCCHHHHHHHTC-----SS-CCCCEEEE-----GGGTEEEECCSCHHHHHHHHHHH
T ss_pred CCCEEE-EeCCCC-----------CCCHHHHHHHHh-----hC-CeEEEEEe-----CCCcEEEEEECCHHHHHHHHHHh
Confidence 356799 999999 699999999998 44 67778773 689999999999999977765 6
Q ss_pred CCc
Q 024012 143 PGV 145 (274)
Q Consensus 143 ~g~ 145 (274)
+|.
T Consensus 61 ~g~ 63 (88)
T 1wg1_A 61 HQY 63 (88)
T ss_dssp TTE
T ss_pred CCC
Confidence 775
No 363
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.03 E-value=4.6e-10 Score=80.31 Aligned_cols=64 Identities=8% Similarity=-0.023 Sum_probs=51.3
Q ss_pred CCCceeeeecCCCcceeEEecCCCCCCCCHHHHHHHHHHHHHhhhCCcccce-EEEecCCCCCCeEEeeeCCHHHHHHHH
Q 024012 62 QIGTTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQ-MCIYHVSWQSNFGFCCELDDECAQELT 140 (274)
Q Consensus 62 ~~~s~~lf~vgnl~~~~~~~~~p~~~~~t~~~L~~~F~~~l~~~~G~v~~v~-i~~~~~g~srgfgFV~f~~~e~a~~a~ 140 (274)
...+++|| |+|||+ ++|+++|+++|.++ |.|.+++ ++.+ ...|.|||+|.+.++|++|+
T Consensus 12 ~~~~~~l~-V~nlp~-----------~~t~~~l~~~F~~~-----G~v~~~~~i~~~---~~~~~afV~f~~~~~a~~Ai 71 (96)
T 2e44_A 12 RQRIRKLQ-IRNIPP-----------HLQWEVLDSLLVQY-----GVVESCEQVNTD---SETAVVNVTYSSKDQARQAL 71 (96)
T ss_dssp CCSCCCEE-EEEECS-----------SSCHHHHHHHHHHH-----SCEEEEEEECCS---SSSEEEEEEESSHHHHHHHH
T ss_pred CCCCCEEE-EEcCCC-----------CCCHHHHHHHHHhc-----CCeEEEEEeecC---CCCCEEEEEECCHHHHHHHH
Confidence 34567899 999999 69999999999988 9999995 5533 22344999999999997776
Q ss_pred C-CCCc
Q 024012 141 G-VPGV 145 (274)
Q Consensus 141 ~-~~g~ 145 (274)
. |+|.
T Consensus 72 ~~l~g~ 77 (96)
T 2e44_A 72 DKLNGF 77 (96)
T ss_dssp HHHTTC
T ss_pred HHhCCC
Confidence 5 7774
No 364
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=98.98 E-value=3.9e-10 Score=84.57 Aligned_cols=61 Identities=18% Similarity=0.162 Sum_probs=51.0
Q ss_pred CCCCceeeeecCCCcceeEEecCCCCCCCCHHHHHHHHHHHHHhhhCCcccceEEEecCCCCCCeEEeeeCCHHHHHHHH
Q 024012 61 SQIGTTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIYHVSWQSNFGFCCELDDECAQELT 140 (274)
Q Consensus 61 ~~~~s~~lf~vgnl~~~~~~~~~p~~~~~t~~~L~~~F~~~l~~~~G~v~~v~i~~~~~g~srgfgFV~f~~~e~a~~a~ 140 (274)
++..+++|| |||+ ++|+++|+++|.++ |.|.+|++. .++|||||+|.+.++|++|+
T Consensus 35 ~~~~~~~lf-Vgnl-------------~~te~~L~~~F~~~-----G~I~~v~i~-----~~kg~aFV~f~~~~~A~~Ai 90 (121)
T 2bz2_A 35 APRKGNTLY-VYGE-------------DMTPTLLRGAFSPF-----GNIIDLSMD-----PPRNCAFVTYEKMESADQAV 90 (121)
T ss_dssp CCCCCCEEE-EECS-------------SCCHHHHHHHHSTT-----CCCSCEEEE-----TTTTEEEEECSSHHHHHHHH
T ss_pred CCCCCCEEE-EcCC-------------CCCHHHHHHHHHcc-----CCEEEEEEe-----CCCCEEEEEECCHHHHHHHH
Confidence 334577899 9983 37999999999977 999999885 67999999999999997776
Q ss_pred -CCCCc
Q 024012 141 -GVPGV 145 (274)
Q Consensus 141 -~~~g~ 145 (274)
.|+|.
T Consensus 91 ~~lng~ 96 (121)
T 2bz2_A 91 AELNGT 96 (121)
T ss_dssp HHHTTC
T ss_pred HHhCCC
Confidence 56765
No 365
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=98.98 E-value=1e-09 Score=82.42 Aligned_cols=57 Identities=12% Similarity=0.084 Sum_probs=47.7
Q ss_pred eeecCCCcceeEEecCCCCCCCCHHHHHHHHHHHHHhhhCCcccceEEEecCCCCCCe-EEeeeCCHHHHHHHH-CCCCc
Q 024012 68 LFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIYHVSWQSNF-GFCCELDDECAQELT-GVPGV 145 (274)
Q Consensus 68 lf~vgnl~~~~~~~~~p~~~~~t~~~L~~~F~~~l~~~~G~v~~v~i~~~~~g~srgf-gFV~f~~~e~a~~a~-~~~g~ 145 (274)
|| |+||++ .+|+++|.++|+++ |.|.+|+|..+ .|| |||+|.+.++|.+|+ .|+|.
T Consensus 28 l~-V~NL~~-----------~vt~~~L~~~Fs~y-----G~V~~v~i~~~-----~Gf~aFVef~~~~~A~~A~~~LnG~ 85 (124)
T 2e5i_A 28 LS-IQNPLY-----------PITVDVLYTVCNPV-----GKVQRIVIFKR-----NGIQAMVEFESVLCAQKAKAALNGA 85 (124)
T ss_dssp EE-EESCCS-----------CCCHHHHHHHHTTT-----SCEEEEEEEES-----SSEEEEEEESSHHHHHHHHHHHTTC
T ss_pred EE-EcCcCC-----------CCCHHHHHHHHHhc-----CCEEEEEEEeC-----CCCEEEEEECCHHHHHHHHHHhCCC
Confidence 45 999999 69999999999977 99999998643 386 999999999995554 57875
Q ss_pred e
Q 024012 146 L 146 (274)
Q Consensus 146 ~ 146 (274)
.
T Consensus 86 ~ 86 (124)
T 2e5i_A 86 D 86 (124)
T ss_dssp C
T ss_pred E
Confidence 3
No 366
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.96 E-value=5.7e-10 Score=78.79 Aligned_cols=57 Identities=7% Similarity=-0.017 Sum_probs=44.6
Q ss_pred CceeeeecCCCcceeEEecCCCCCCCCHHHHH----HHHHHHHHhhhC-CcccceEEEecCCCCCCeEEeeeCCHHHHHH
Q 024012 64 GTTLLFPLGTTKHWLVRMDKPGVGVVTKAQMV----DRYAQILTKVLG-NEKDAQMCIYHVSWQSNFGFCCELDDECAQE 138 (274)
Q Consensus 64 ~s~~lf~vgnl~~~~~~~~~p~~~~~t~~~L~----~~F~~~l~~~~G-~v~~v~i~~~~~g~srgfgFV~f~~~e~a~~ 138 (274)
++.++++|+|||+ ++++++|+ ++|.++ | +|.+| +| |||||.|.+.++|++
T Consensus 7 p~~T~lYV~NL~~-----------~~~~~~lk~~L~~lF~~y-----GG~Vl~V------tg---G~AfV~F~~~esA~~ 61 (96)
T 2diu_A 7 GCHTLLYVYNLPA-----------NKDGKSVSNRLRRLSDNC-----GGKVLSI------TG---CSAILRFINQDSAER 61 (96)
T ss_dssp CSSEEEEEESCCT-----------TSCHHHHHHHHHHHHHTT-----TCCEEEC------CT---TCEEEEESSHHHHHH
T ss_pred CcceEEEEeCCCC-----------cCCHHHHHHHHHHHHHHc-----CCeeEEE------ec---CEEEEEECCHHHHHH
Confidence 3555444999999 69998855 788866 7 99877 33 999999999999966
Q ss_pred HH-CCCCc
Q 024012 139 LT-GVPGV 145 (274)
Q Consensus 139 a~-~~~g~ 145 (274)
|+ .|+|.
T Consensus 62 A~~~l~G~ 69 (96)
T 2diu_A 62 AQKRMENE 69 (96)
T ss_dssp HHHHHTTC
T ss_pred HHHHhcCC
Confidence 65 57874
No 367
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=98.96 E-value=4.2e-10 Score=98.80 Aligned_cols=64 Identities=14% Similarity=0.116 Sum_probs=52.6
Q ss_pred CCCceeeeecCC--CcceeEEecCCCCCCCCHHHHHHHHHHHHHhhhCCcccceEEEecCCCCCCeEEeeeCCHHHHHHH
Q 024012 62 QIGTTLLFPLGT--TKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIYHVSWQSNFGFCCELDDECAQEL 139 (274)
Q Consensus 62 ~~~s~~lf~vgn--l~~~~~~~~~p~~~~~t~~~L~~~F~~~l~~~~G~v~~v~i~~~~~g~srgfgFV~f~~~e~a~~a 139 (274)
...+++|| ||| |++ .+|+++|+++|+++ |.|.+|+|.. +||||||+|.+.++|++|
T Consensus 15 ~~ps~~l~-VgN~gl~~-----------~~te~~L~~~F~~~-----G~V~~v~~~~-----~kgfaFV~f~~~~~A~~A 72 (345)
T 3tht_A 15 SYATQSLV-VANGGLGN-----------GVSRNQLLPVLEKC-----GLVDALLMPP-----NKPYSFARYRTTEESKRA 72 (345)
T ss_dssp SSCCSEEE-EETCSGGG-----------TCCHHHHHHHHHTT-----SCEEEEECCT-----TCSEEEEEESSHHHHHHH
T ss_pred CCCCCEEE-EEcCCCCC-----------CCCHHHHHHHHHhc-----CCeEEEEEeC-----CCCEEEEEECCHHHHHHH
Confidence 34677899 999 567 79999999999987 9998877642 689999999999999555
Q ss_pred -HCCCCcee
Q 024012 140 -TGVPGVLS 147 (274)
Q Consensus 140 -~~~~g~~~ 147 (274)
.+|||...
T Consensus 73 i~~lnG~~~ 81 (345)
T 3tht_A 73 YVTLNGKEV 81 (345)
T ss_dssp HHHTTTCEE
T ss_pred HHHhCCCcc
Confidence 55898654
No 368
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=98.95 E-value=5.3e-10 Score=84.46 Aligned_cols=59 Identities=14% Similarity=0.082 Sum_probs=49.3
Q ss_pred eeeecCCCcceeEEecCCCCCCCCHHHHHHHHHHHHHhhhCCcccceEEEecCCCCCCe-EEeeeCCHHHHHHH-HCCCC
Q 024012 67 LLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIYHVSWQSNF-GFCCELDDECAQEL-TGVPG 144 (274)
Q Consensus 67 ~lf~vgnl~~~~~~~~~p~~~~~t~~~L~~~F~~~l~~~~G~v~~v~i~~~~~g~srgf-gFV~f~~~e~a~~a-~~~~g 144 (274)
.|+ |+||++ .+|+++|.++|+++ |.|.+|++..+ ++|| |||+|.+.++|++| ..|+|
T Consensus 30 ~I~-V~NL~~-----------~vte~~L~~lFs~y-----G~V~~V~i~~~----~~gfqAFVef~~~~~A~~Ai~~LnG 88 (130)
T 3zzy_A 30 RII-VENLFY-----------PVTLDVLHQIFSKF-----GTVLKIITFTK----NNQFQALLQYADPVSAQHAKLSLDG 88 (130)
T ss_dssp EEE-EESCCS-----------CCCHHHHHHHHTTS-----SCEEEEEEEEE----TTEEEEEEEESCHHHHHHHHHHHTT
T ss_pred EEE-ECCCCC-----------CCCHHHHHHHHhCc-----CCEEEEEEEcC----CCCcEEEEEECCHHHHHHHHHHcCC
Confidence 455 999999 69999999999977 99999988753 3788 99999999999555 45787
Q ss_pred ce
Q 024012 145 VL 146 (274)
Q Consensus 145 ~~ 146 (274)
..
T Consensus 89 ~~ 90 (130)
T 3zzy_A 89 QN 90 (130)
T ss_dssp CE
T ss_pred Ce
Confidence 53
No 369
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=98.91 E-value=5.6e-10 Score=93.17 Aligned_cols=63 Identities=11% Similarity=0.160 Sum_probs=53.2
Q ss_pred CCCceeeeecCCCcceeEEecCCCCCCC---------CHHHHHHHHHHHHHhhhCCcccceEEEecCCCCCCeEEeeeCC
Q 024012 62 QIGTTLLFPLGTTKHWLVRMDKPGVGVV---------TKAQMVDRYAQILTKVLGNEKDAQMCIYHVSWQSNFGFCCELD 132 (274)
Q Consensus 62 ~~~s~~lf~vgnl~~~~~~~~~p~~~~~---------t~~~L~~~F~~~l~~~~G~v~~v~i~~~~~g~srgfgFV~f~~ 132 (274)
....++|| ||||+. ++ |+++|+++|+++ |.|.+|+|+. +||||||+|.+
T Consensus 131 ~~~~rtLf-VgnL~~-----------~~~~~~~~~~~tEe~L~~~F~~f-----G~I~~v~v~~-----~kG~AFV~F~~ 188 (240)
T 3u1l_A 131 RKKNKTLY-VGGIDG-----------ALNSKHLKPAQIESRIRFVFSRL-----GDIDRIRYVE-----SKNCGFVKFKY 188 (240)
T ss_dssp CCCCCEEE-EECTTG-----------GGTTCCCCHHHHHHHHHHHHHTT-----SCEEEEEEEG-----GGTEEEEEESS
T ss_pred ccCCceee-cCCCCh-----------hhhcccccccCcHHHHHHHHHcc-----CCEEEEEEEC-----CCCEEEEEeCC
Confidence 44678899 999999 46 799999999977 9999999883 59999999999
Q ss_pred HHHHHHHH-CCCCce
Q 024012 133 DECAQELT-GVPGVL 146 (274)
Q Consensus 133 ~e~a~~a~-~~~g~~ 146 (274)
.++|++|+ .|+|..
T Consensus 189 ~~~Ae~A~~am~g~~ 203 (240)
T 3u1l_A 189 QANAEFAKEAMSNQT 203 (240)
T ss_dssp HHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHhCCCE
Confidence 99996665 567653
No 370
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=98.91 E-value=8.3e-10 Score=80.61 Aligned_cols=71 Identities=10% Similarity=-0.052 Sum_probs=53.2
Q ss_pred CceeeeecCCCcceeEEecCCCCCCCCHHHHHHHHHHHHHhhhCCcccceEEEec--CCCCCCeEEeeeCCHHHHHHHH-
Q 024012 64 GTTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIYH--VSWQSNFGFCCELDDECAQELT- 140 (274)
Q Consensus 64 ~s~~lf~vgnl~~~~~~~~~p~~~~~t~~~L~~~F~~~l~~~~G~v~~v~i~~~~--~g~srgfgFV~f~~~e~a~~a~- 140 (274)
.+++|+ +.|+..- .++ .+.++++|++.|+++ |.|.+++|+.+. +++++|||||+|.++++|++|+
T Consensus 7 ~s~~l~-l~Nm~~~---~~l---~dd~~~dl~~~f~~~-----G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~ 74 (105)
T 2pe8_A 7 PTKVVL-LRNMVGA---GEV---DEDLEVETKEECEKY-----GKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVV 74 (105)
T ss_dssp CCSEEE-EESSSCS---CCC------CHHHHHHHGGGG-----SCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHH
T ss_pred CCCEEE-EEcCCCh---HHh---hHHHHHHHHHHHHhc-----CCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHH
Confidence 466777 8888640 000 134789999999977 999999998754 3689999999999999995555
Q ss_pred CCCCce
Q 024012 141 GVPGVL 146 (274)
Q Consensus 141 ~~~g~~ 146 (274)
.|||..
T Consensus 75 ~lnG~~ 80 (105)
T 2pe8_A 75 DLNGRY 80 (105)
T ss_dssp HHTTCE
T ss_pred HHCCCE
Confidence 578754
No 371
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.85 E-value=3.1e-09 Score=76.77 Aligned_cols=46 Identities=11% Similarity=0.024 Sum_probs=41.2
Q ss_pred CCCCHHHHHHHHHHHHHhhhCCcccceEEEecCCCCCCeEEeeeCCHHHHHHHHC
Q 024012 87 GVVTKAQMVDRYAQILTKVLGNEKDAQMCIYHVSWQSNFGFCCELDDECAQELTG 141 (274)
Q Consensus 87 ~~~t~~~L~~~F~~~l~~~~G~v~~v~i~~~~~g~srgfgFV~f~~~e~a~~a~~ 141 (274)
+.+|+++|+++|.++ |.|.+|+|+ ++++|||||+|.+.++|++|+.
T Consensus 27 ~~~te~~L~~~F~~~-----G~V~~v~i~----~~~rGfaFVeF~~~~~A~~Ai~ 72 (100)
T 2d9o_A 27 GGYSKDVLLRLLQKY-----GEVLNLVLS----SKKPGTAVVEFATVKAAELAVQ 72 (100)
T ss_dssp CSCCHHHHHHHHHTT-----SCEEEEEEE----SSSSSEEEEEESCHHHHHHHHH
T ss_pred CCCCHHHHHHHHHhc-----CCEEEEEEc----cCCCCEEEEEECCHHHHHHHHH
Confidence 469999999999977 999999987 5789999999999999977764
No 372
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=98.85 E-value=3.5e-10 Score=82.50 Aligned_cols=59 Identities=12% Similarity=0.169 Sum_probs=46.1
Q ss_pred CCCHHHHHHHHHHHH------H-hhhCCcccceEEEecCCCCCCeEEeeeCCHHHHHHHH-CCCCce
Q 024012 88 VVTKAQMVDRYAQIL------T-KVLGNEKDAQMCIYHVSWQSNFGFCCELDDECAQELT-GVPGVL 146 (274)
Q Consensus 88 ~~t~~~L~~~F~~~l------~-~~~G~v~~v~i~~~~~g~srgfgFV~f~~~e~a~~a~-~~~g~~ 146 (274)
.+|+++|++.|..+. . +.+|.|.+|+|+.+.+++++|||||+|.++++|++|+ .|||..
T Consensus 26 ~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~~~~~G~~fV~f~~~~~A~~A~~~lng~~ 92 (104)
T 1jmt_A 26 AVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRW 92 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSSSSSEEEEEEEESCHHHHHHHHHHHTTCE
T ss_pred ccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCCCCccEEEEEEECCHHHHHHHHHHHCCCE
Confidence 588888888772211 1 3449999999998777899999999999999996665 578754
No 373
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.81 E-value=4.9e-09 Score=77.33 Aligned_cols=76 Identities=11% Similarity=-0.018 Sum_probs=52.4
Q ss_pred CCCCCCceeeeecCCCcceeEEecCCCC---CCCCHHHHHHHHHHHHHhhhCCcccceEEEecCCCCCCeEEeeeCCHHH
Q 024012 59 WNSQIGTTLLFPLGTTKHWLVRMDKPGV---GVVTKAQMVDRYAQILTKVLGNEKDAQMCIYHVSWQSNFGFCCELDDEC 135 (274)
Q Consensus 59 ~~~~~~s~~lf~vgnl~~~~~~~~~p~~---~~~t~~~L~~~F~~~l~~~~G~v~~v~i~~~~~g~srgfgFV~f~~~e~ 135 (274)
...+..+++|+ +.||..- .++..+ -+.++++|+++|.++ |.|.+|.|. +..++|||||+|.+.++
T Consensus 9 ~~~~~~s~~l~-l~Nl~~~---~~~~~~~~~~~~~e~~l~~~f~~~-----G~v~~v~i~---~~~~~G~afV~f~~~~~ 76 (112)
T 2dit_A 9 PSRMRHERVVI-IKNMFHP---MDFEDDPLVLNEIREDLRVECSKF-----GQIRKLLLF---DRHPDGVASVSFRDPEE 76 (112)
T ss_dssp CCCCCSCCEEE-EESSCCT---THHHHCSHHHHHHHHHHHHHGGGT-----SCCSEEEEE---TTCTTCEEEEECSCHHH
T ss_pred CCCCCCceEEE-EEcCCCH---HHhccCHHHHHHHHHHHHHHHHcc-----CCEeEEEEe---cCCCCEEEEEEECCHHH
Confidence 34556788898 9998440 000000 001368999999977 999999663 33489999999999999
Q ss_pred HHHHH-CCCCce
Q 024012 136 AQELT-GVPGVL 146 (274)
Q Consensus 136 a~~a~-~~~g~~ 146 (274)
|++|+ .|+|..
T Consensus 77 A~~Ai~~lng~~ 88 (112)
T 2dit_A 77 ADYCIQTLDGRW 88 (112)
T ss_dssp HHHHHHHSTTCE
T ss_pred HHHHHHHcCCCE
Confidence 96666 678753
No 374
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.72 E-value=8.6e-08 Score=68.74 Aligned_cols=71 Identities=17% Similarity=0.152 Sum_probs=65.8
Q ss_pred ccEEEEcCCCCCCCHHHHHHHHhcc-----CCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEeEE
Q 024012 185 TKKLFVTGLSFYTSEKTLRAAFEGF-----GELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVV 259 (274)
Q Consensus 185 ~~~lfV~nLp~~~te~~L~~~F~~f-----G~i~~v~i~~d~~~g~~rG~aFV~F~s~~~A~~Ai~~l~g~~l~G~~l~V 259 (274)
.++|-+-|||..++...|+.+.+++ |.|+.+.+..|. |-|+|+|.+...|.+|.-+|+|.+|+||+|++
T Consensus 21 ~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH------~GAivef~d~~~AgKasLaL~G~ef~gr~Lr~ 94 (117)
T 2l9w_A 21 ETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDF------NGAIIIFRDSKFAAKMLMILNGSQFQGKVIRS 94 (117)
T ss_dssp TSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTT------TEEEEECSCHHHHHHHHHHHSSEEETTEEEEE
T ss_pred CcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCC------CceEEEEccchhhHHHHhhcCCeeecCeEEEe
Confidence 6788899999999999999999999 999999999885 35999999999999999999999999999998
Q ss_pred Ee
Q 024012 260 DV 261 (274)
Q Consensus 260 ~~ 261 (274)
.-
T Consensus 95 gT 96 (117)
T 2l9w_A 95 GT 96 (117)
T ss_dssp EC
T ss_pred cC
Confidence 63
No 375
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=98.65 E-value=1.4e-08 Score=74.09 Aligned_cols=52 Identities=13% Similarity=-0.067 Sum_probs=42.3
Q ss_pred CHHHHHHHHHHHHHhhhCCcccceEEEecC---CCCCCeEEeeeCCHHHHHHH-HCCCCce
Q 024012 90 TKAQMVDRYAQILTKVLGNEKDAQMCIYHV---SWQSNFGFCCELDDECAQEL-TGVPGVL 146 (274)
Q Consensus 90 t~~~L~~~F~~~l~~~~G~v~~v~i~~~~~---g~srgfgFV~f~~~e~a~~a-~~~~g~~ 146 (274)
++++|++.|+++ |.|.+|+|+++.. ++++|||||+|.++++|++| ..|||..
T Consensus 28 ~~~dl~~~f~k~-----G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~~ 83 (105)
T 3v4m_A 28 IVEDVRDECSKY-----GLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRK 83 (105)
T ss_dssp HHHHHHHHHHTT-----SCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTCE
T ss_pred HHHHHHHHHHcc-----CCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCCE
Confidence 347899999977 9999999987654 36899999999999999555 4678754
No 376
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=98.47 E-value=5.1e-08 Score=72.49 Aligned_cols=71 Identities=8% Similarity=-0.057 Sum_probs=51.6
Q ss_pred CceeeeecCCCcceeEEecCCCCCCCCHHHHHHHHHHHHHhhhCCcccceEEEecC-----CCCCCeEEeeeCCHHHHHH
Q 024012 64 GTTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIYHV-----SWQSNFGFCCELDDECAQE 138 (274)
Q Consensus 64 ~s~~lf~vgnl~~~~~~~~~p~~~~~t~~~L~~~F~~~l~~~~G~v~~v~i~~~~~-----g~srgfgFV~f~~~e~a~~ 138 (274)
.|++|+ +.|+-.- .++ . +-.+++|++.|+++ |.|.+|+|+.+.. ++++|||||+|.++++|.+
T Consensus 19 ps~vl~-L~Nm~~~---~el--~-ddleedl~eef~k~-----G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~ 86 (118)
T 3ue2_A 19 ESTVMV-LRNMVDP---KDI--D-DDLEGEVTEECGKF-----GAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHK 86 (118)
T ss_dssp SCCEEE-EESCSCG---GGC--C-TTHHHHHHHHHTTT-----SCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHH
T ss_pred CCCEEE-EECCCCH---HHH--H-HHHHHHHHHHHhcc-----CCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHH
Confidence 466777 8887430 000 1 22468999999977 9999999988643 5678999999999999955
Q ss_pred H-HCCCCce
Q 024012 139 L-TGVPGVL 146 (274)
Q Consensus 139 a-~~~~g~~ 146 (274)
| ..|||..
T Consensus 87 Ai~~LnGr~ 95 (118)
T 3ue2_A 87 AIQALNGRW 95 (118)
T ss_dssp HHHHHTTCE
T ss_pred HHHHHCCCE
Confidence 5 5578753
No 377
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=98.19 E-value=4.6e-07 Score=66.86 Aligned_cols=48 Identities=8% Similarity=-0.031 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHhhhCCcccceEEEecCCCCCCeEEeeeCCHHHHHHHH-CCCCce
Q 024012 91 KAQMVDRYAQILTKVLGNEKDAQMCIYHVSWQSNFGFCCELDDECAQELT-GVPGVL 146 (274)
Q Consensus 91 ~~~L~~~F~~~l~~~~G~v~~v~i~~~~~g~srgfgFV~f~~~e~a~~a~-~~~g~~ 146 (274)
+++|++.|+++ |.|.+|.|.+. .++|||||+|.+.++|++|+ .|||..
T Consensus 31 ~edl~~~f~kf-----G~V~~v~i~~~---~~~G~~fV~f~~~e~A~~Ai~~lnG~~ 79 (114)
T 3s6e_A 31 KDDVIEECNKH-----GGVIHIYVDKN---SAQGNVYVKCPSIAAAIAAVNALHGRW 79 (114)
T ss_dssp HHHHHHHHTTT-----TCCSEEEECTT---CTTCCEEEECSSHHHHHHHHHHHTTCE
T ss_pred HHHHHHHHhcc-----CCEEEEEEecC---CCcEEEEEEECCHHHHHHHHHHhCCCE
Confidence 45677777766 99999888633 36999999999999995554 578754
No 378
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.15 E-value=6.9e-06 Score=58.63 Aligned_cols=76 Identities=12% Similarity=0.063 Sum_probs=64.8
Q ss_pred ccEEEEcCCCCCC-C----HHHHHHHHhccCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEeEE
Q 024012 185 TKKLFVTGLSFYT-S----EKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVV 259 (274)
Q Consensus 185 ~~~lfV~nLp~~~-t----e~~L~~~F~~fG~i~~v~i~~d~~~g~~rG~aFV~F~s~~~A~~Ai~~l~g~~l~G~~l~V 259 (274)
.++|+|.||+..+ . .+.++++|..|+++......+.- .-..|.|.+.++|.+|-..||+..+.|++++|
T Consensus 5 pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkSF------RRirv~F~~~~~A~~AR~~Lh~~~f~g~~~r~ 78 (104)
T 1wey_A 5 SSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSF------KRVRINFSNPLSAADARLRLHKTEFLGKEMKL 78 (104)
T ss_dssp CCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETTT------TEEEEECSSTTHHHHHHHTSTTSEETTEECEE
T ss_pred CceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCcc------eEEEEEeCChHHHHHHHHHhccceecCceeEE
Confidence 5789999999876 2 25789999999998887777542 25799999999999999999999999999999
Q ss_pred EeecCCC
Q 024012 260 DVAKTTP 266 (274)
Q Consensus 260 ~~a~~~~ 266 (274)
-++++.+
T Consensus 79 YFgq~~~ 85 (104)
T 1wey_A 79 YFAQTLH 85 (104)
T ss_dssp ECCCCSS
T ss_pred EecCCCC
Confidence 9998654
No 379
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.91 E-value=3.9e-06 Score=62.23 Aligned_cols=59 Identities=10% Similarity=-0.026 Sum_probs=46.0
Q ss_pred CCCceeeeecCCCcceeEEecCCCCCC-CCHHHHHHHHHHHHHhhhCCcccceEEEecCCCCCCeEEeeeCC-HHHH-HH
Q 024012 62 QIGTTLLFPLGTTKHWLVRMDKPGVGV-VTKAQMVDRYAQILTKVLGNEKDAQMCIYHVSWQSNFGFCCELD-DECA-QE 138 (274)
Q Consensus 62 ~~~s~~lf~vgnl~~~~~~~~~p~~~~-~t~~~L~~~F~~~l~~~~G~v~~v~i~~~~~g~srgfgFV~f~~-~e~a-~~ 138 (274)
.+....|+ |+||+. + +|+++|+++|.++ |.|..|.+... .-.|||.|.+ +++| ++
T Consensus 15 ~~~G~il~-v~~l~~-----------~~~sredLke~F~~~-----G~V~~Vd~~~g-----~~tgfVrf~~~~~~A~~a 72 (121)
T 1owx_A 15 EKIGCLLK-FSGDLD-----------DQTCREDLHILFSNH-----GEIKWIDFVRG-----AKEGIILFKEKAKEALGK 72 (121)
T ss_dssp CCCCCEEE-EEESCC-----------SSCCHHHHHHHTCSS-----CCEEEEECCTT-----CSEEEEEESSCHHHHHHH
T ss_pred ccCCeEEE-EecCCC-----------CcCCHHHHHHHHHhc-----CCEEEEEEecC-----CCEEEEEECCChHHHHHH
Confidence 34555666 999999 7 9999999999977 99988888754 2269999999 6777 55
Q ss_pred HHCC
Q 024012 139 LTGV 142 (274)
Q Consensus 139 a~~~ 142 (274)
+.++
T Consensus 73 v~~l 76 (121)
T 1owx_A 73 AKDA 76 (121)
T ss_dssp HHHT
T ss_pred HHHh
Confidence 5544
No 380
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=97.79 E-value=9.4e-05 Score=51.92 Aligned_cols=54 Identities=22% Similarity=0.316 Sum_probs=47.5
Q ss_pred ccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHh
Q 024012 185 TKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEM 247 (274)
Q Consensus 185 ~~~lfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~d~~~g~~rG~aFV~F~s~~~A~~Ai~~l 247 (274)
.+.++| ++|..+...||.++|++||.| .|+.+-|. -|||.|.+++.|..|+..+
T Consensus 16 ~HVf~l-~FP~ewKt~DI~~lFs~fggv-~I~WidDT-------sAlvvf~~~~~a~~al~~i 69 (100)
T 1whv_A 16 DHVLHV-TFPKEWKTSDLYQLFSAFGNI-QISWIDDT-------SAFVSLSQPEQVQIAVNTS 69 (100)
T ss_dssp CSEEEE-ECCTTCCHHHHHHHHTTTCSC-CCEEEETT-------EEEEECSCHHHHHHHHHHH
T ss_pred CeEEEE-eCChhhhhHHHHHHhhccCCE-EEEEEcCC-------eEEEEecCHHHHHHHHHhc
Confidence 566777 999999999999999999954 67788775 7999999999999999876
No 381
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.78 E-value=4e-05 Score=53.44 Aligned_cols=42 Identities=12% Similarity=0.234 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHhhhCCcccceEEEecCCCCCCeEEeeeCCHHHHHHHHCCCCc
Q 024012 92 AQMVDRYAQILTKVLGNEKDAQMCIYHVSWQSNFGFCCELDDECAQELTGVPGV 145 (274)
Q Consensus 92 ~~L~~~F~~~l~~~~G~v~~v~i~~~~~g~srgfgFV~f~~~e~a~~a~~~~g~ 145 (274)
.+|.+.|.++ |.|..+++. .+.+||+|.+.++|.+|++|+|.
T Consensus 30 ~~L~~~F~~~-----G~Vi~vr~~-------~d~~fVtF~d~~sAlaAi~mnG~ 71 (91)
T 2dnr_A 30 DELLQQFASF-----GEVILIRFV-------EDKMWVTFLEGSSALNVLSLNGK 71 (91)
T ss_dssp HHHHHHHHTT-----CCEEEEEEC-------SSSEEEEESSHHHHHHGGGGTTC
T ss_pred HHHHHHHHhC-----CCeEEEEEe-------cCCEEEEECChHHHHHHHhcCCe
Confidence 4677777766 999999988 34599999999999999999986
No 382
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=97.70 E-value=0.00047 Score=48.22 Aligned_cols=79 Identities=14% Similarity=0.187 Sum_probs=62.3
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCC--cceEEEEEeCCHHHHHHHHHHhCCceeCC-----EEeE
Q 024012 186 KKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKR--SKGYAFIEYTTEEAASAALKEMNGKIING-----WMIV 258 (274)
Q Consensus 186 ~~lfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~d~~~g~--~rG~aFV~F~s~~~A~~Ai~~l~g~~l~G-----~~l~ 258 (274)
.+|-|++||+.+||+++.+.++....+........+.+.+ .-.-|+|.|.+.+++..-.+.++|+.+-+ .+-.
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~D~kg~~~~a~ 81 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFLDNKGQEYPAI 81 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEECTTCCEEECE
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEEcCCCCEeeeE
Confidence 4789999999999999999999998887776665543322 23579999999999999999999999852 2345
Q ss_pred EEeecC
Q 024012 259 VDVAKT 264 (274)
Q Consensus 259 V~~a~~ 264 (274)
|++|--
T Consensus 82 VE~AP~ 87 (91)
T 1uw4_A 82 VEFAPF 87 (91)
T ss_dssp EEECSS
T ss_pred EEEcCC
Confidence 777643
No 383
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.67 E-value=0.00061 Score=48.36 Aligned_cols=71 Identities=15% Similarity=0.160 Sum_probs=59.4
Q ss_pred ccEEEEcCCCCCCCHHHHHHHHhc-----cCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEeEE
Q 024012 185 TKKLFVTGLSFYTSEKTLRAAFEG-----FGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVV 259 (274)
Q Consensus 185 ~~~lfV~nLp~~~te~~L~~~F~~-----fG~i~~v~i~~d~~~g~~rG~aFV~F~s~~~A~~Ai~~l~g~~l~G~~l~V 259 (274)
..+|.|.|||+.++++.|.-+|++ =|+|++++... +-|+|+|.+.+.|++.|+. ..+.|+|.+|.|
T Consensus 8 ~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~--------~~AvItF~d~~va~rVL~k-~~H~L~~~~LsV 78 (104)
T 2dhx_A 8 GVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG--------CGGVLTFREPADAERVLAQ-ADHELHGAQLSL 78 (104)
T ss_dssp CCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET--------TEEEEEESSHHHHHHHHTC-SCCBSSSSBCEE
T ss_pred ccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC--------CcEEEEEcChHHHHHHhcC-CcceecCeEEEE
Confidence 778999999999999999999976 27788887754 3699999999999999943 468889999988
Q ss_pred EeecC
Q 024012 260 DVAKT 264 (274)
Q Consensus 260 ~~a~~ 264 (274)
.-.-+
T Consensus 79 ~P~~~ 83 (104)
T 2dhx_A 79 RPAPP 83 (104)
T ss_dssp EECCC
T ss_pred EcCCC
Confidence 65443
No 384
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=97.56 E-value=3.3e-05 Score=63.47 Aligned_cols=53 Identities=6% Similarity=-0.086 Sum_probs=41.4
Q ss_pred CCHHHHHHHHHHHHHhhhCCcccceEEEec-----CCCCCCeEEeeeCCHHHHHHH-HCCCCce
Q 024012 89 VTKAQMVDRYAQILTKVLGNEKDAQMCIYH-----VSWQSNFGFCCELDDECAQEL-TGVPGVL 146 (274)
Q Consensus 89 ~t~~~L~~~F~~~l~~~~G~v~~v~i~~~~-----~g~srgfgFV~f~~~e~a~~a-~~~~g~~ 146 (274)
-.+++|.+.|.++ |.|.++.|+... +++++|++||+|.+.++|++| ..|+|..
T Consensus 141 e~~~dl~~e~~~~-----G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~ 199 (222)
T 3dxb_A 141 DLEGEVTEECGKF-----GAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRW 199 (222)
T ss_dssp THHHHHHHHHTTT-----SCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCB
T ss_pred HHHHHHHHHHHcc-----CCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCce
Confidence 3567788888866 999999988643 348999999999999999555 4567753
No 385
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=97.53 E-value=0.001 Score=48.70 Aligned_cols=74 Identities=19% Similarity=0.315 Sum_probs=59.6
Q ss_pred CccccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCC-EEeEEE
Q 024012 182 QIKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIING-WMIVVD 260 (274)
Q Consensus 182 ~~~~~~lfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~d~~~g~~rG~aFV~F~s~~~A~~Ai~~l~g~~l~G-~~l~V~ 260 (274)
.....-|-|-|.|+.. -..+..+|++||+|++.... ....+-.|.|.++.+|++|| ..||..++| -.|-|.
T Consensus 21 ~~~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~------~~~NWihI~Y~s~~~A~rAL-~kNG~ii~g~~mIGV~ 92 (119)
T 1wwh_A 21 HLDDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMS------NTGNWMHIRYQSKLQARKAL-SKDGRIFGESIMIGVK 92 (119)
T ss_dssp CGGGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEEC------SSSSEEEEEESSHHHHHHHH-TTTTCEETTTEECEEE
T ss_pred CCCCCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccC------CCCCeEEEEeCCHHHHHHHH-HhCCeEecCCEEEEEE
Confidence 3447788999999884 67788899999999988762 12359999999999999999 569999985 677777
Q ss_pred eec
Q 024012 261 VAK 263 (274)
Q Consensus 261 ~a~ 263 (274)
...
T Consensus 93 p~~ 95 (119)
T 1wwh_A 93 PCI 95 (119)
T ss_dssp ECC
T ss_pred ECC
Confidence 643
No 386
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=97.51 E-value=0.00015 Score=51.12 Aligned_cols=55 Identities=22% Similarity=0.293 Sum_probs=47.6
Q ss_pred ccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhC
Q 024012 185 TKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMN 248 (274)
Q Consensus 185 ~~~lfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~d~~~g~~rG~aFV~F~s~~~A~~Ai~~l~ 248 (274)
.+.++| ++|..+...||.++|++|| -..|+.+-|. -|||.|.+++.|..|+..+.
T Consensus 6 ~HV~~l-~FP~ewKt~Di~~lFs~fg-gv~I~WidDT-------sAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 6 DHVLHV-TFPKEWKTSDLYQLFSAFG-NIQISWIDDT-------SAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEEEE-ECCTTCCHHHHHHHTTTSE-EEEEEEEETT-------EEEEEEEEECHHHHHHHHHT
T ss_pred CeEEEE-eCChhhhhHHHHHHHhccC-CEEEEEEcCC-------eEEEEecCHHHHHHHHHhcc
Confidence 445666 9999999999999999999 4578888775 79999999999999998774
No 387
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.43 E-value=7.6e-05 Score=52.33 Aligned_cols=42 Identities=12% Similarity=0.120 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHhhhCCcccceEEEecCCCCCCeEEeeeCCHHHHHHHHCCCCc
Q 024012 92 AQMVDRYAQILTKVLGNEKDAQMCIYHVSWQSNFGFCCELDDECAQELTGVPGV 145 (274)
Q Consensus 92 ~~L~~~F~~~l~~~~G~v~~v~i~~~~~g~srgfgFV~f~~~e~a~~a~~~~g~ 145 (274)
.+|.+.|.++ |.|..+|+..+. +||+|.+.++|.+|++|+|.
T Consensus 39 ~~L~~~F~~~-----G~Vilvr~v~d~-------~fVtF~d~~sAl~AI~ldG~ 80 (95)
T 1ufw_A 39 TELMQTLGSY-----GTIVLVRINQGQ-------MLVTFADSHSALSVLDVDGM 80 (95)
T ss_dssp HHHHHHHHHH-----SCCSEEEEETTE-------EEEECSCSHHHHHHHHGGGS
T ss_pred HHHHHHHHHC-----CCEEEEEEecCc-------EEEEEcChHHHHHHHhcCCe
Confidence 4688888877 999999988442 99999999999999889885
No 388
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.83 E-value=0.0021 Score=45.61 Aligned_cols=58 Identities=9% Similarity=-0.117 Sum_probs=44.6
Q ss_pred eeeeecCCCcceeEEecCCCCCCCCHHHHHHHHHHHHHhhhCCcccceEEEecCCCCCCeEEeeeCCHHHHHHHHCC
Q 024012 66 TLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIYHVSWQSNFGFCCELDDECAQELTGV 142 (274)
Q Consensus 66 ~~lf~vgnl~~~~~~~~~p~~~~~t~~~L~~~F~~~l~~~~G~v~~v~i~~~~~g~srgfgFV~f~~~e~a~~a~~~ 142 (274)
.++. |.|||. ++.++.|.-+|+.--.+--|.|.+++.. .+-|+|+|.+.+.|+++++.
T Consensus 9 ~~I~-V~~lPp-----------~~~~e~L~LYFEn~rrsGGG~V~~v~~~-------~~~AvItF~d~~va~rVL~k 66 (104)
T 2dhx_A 9 VAVE-VRGLPP-----------AVPDELLTLYFENRRRSGGGPVLSWQRL-------GCGGVLTFREPADAERVLAQ 66 (104)
T ss_dssp CEEE-EESCCT-----------TSCHHHHHHHHHCTTTTCCCCEEEEEEE-------TTEEEEEESSHHHHHHHHTC
T ss_pred cEEE-EECCCC-----------CCChhHheEEEeCCCcCCCceeeEEEEc-------CCcEEEEEcChHHHHHHhcC
Confidence 4566 888888 6899999999996433344677666654 27899999999999999975
No 389
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=96.68 E-value=0.0037 Score=43.98 Aligned_cols=79 Identities=13% Similarity=0.152 Sum_probs=56.4
Q ss_pred ccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCC-CC-cceEEEEEeCCHHHHHHHHHHhCCceeCC-----EEe
Q 024012 185 TKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKIS-KR-SKGYAFIEYTTEEAASAALKEMNGKIING-----WMI 257 (274)
Q Consensus 185 ~~~lfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~d~~~-g~-~rG~aFV~F~s~~~A~~Ai~~l~g~~l~G-----~~l 257 (274)
+-+|-|+.||+.+||+++.+.++..-++..........+ +. .-.-|||.|.+.++...-.+.++|..+-+ -+-
T Consensus 9 ~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D~kg~~~~a 88 (97)
T 2l08_A 9 SHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLDSKGLEYPA 88 (97)
T ss_dssp CCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEECTTCCEEEE
T ss_pred ceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEeCCCCEeee
Confidence 567999999999999999888877655433322222211 11 12458999999999999999999999853 245
Q ss_pred EEEeec
Q 024012 258 VVDVAK 263 (274)
Q Consensus 258 ~V~~a~ 263 (274)
.|++|-
T Consensus 89 ~VE~AP 94 (97)
T 2l08_A 89 VVEFAP 94 (97)
T ss_dssp EEEECC
T ss_pred EEEecC
Confidence 577764
No 390
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=96.60 E-value=0.0031 Score=46.84 Aligned_cols=78 Identities=22% Similarity=0.339 Sum_probs=55.8
Q ss_pred ccEEEEcCCCCCCCHHHHHHHHhccCCeEE-EEEEecC------------CCC-CcceEEEEEeCCHHHHHHHHHHhCCc
Q 024012 185 TKKLFVTGLSFYTSEKTLRAAFEGFGELVE-VKIIMDK------------ISK-RSKGYAFIEYTTEEAASAALKEMNGK 250 (274)
Q Consensus 185 ~~~lfV~nLp~~~te~~L~~~F~~fG~i~~-v~i~~d~------------~~g-~~rG~aFV~F~s~~~A~~Ai~~l~g~ 250 (274)
..-|.|-|.|+.. ...+.++|++||.|.+ ....++. .-+ ...++-.|+|++..+|.+|| ..||.
T Consensus 7 e~~VtVFGFp~~~-~~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL-~~NG~ 84 (132)
T 3p3d_A 7 ELAILVFGYPETM-ANQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDAL-LENGA 84 (132)
T ss_dssp -CEEEEECCCGGG-HHHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHH-TTTTC
T ss_pred ceEEEEEecCHHH-HHHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHH-HhCCe
Confidence 4567788887765 4567778999999876 2211100 000 13568899999999999999 56999
Q ss_pred eeCCEEeEEEeecC
Q 024012 251 IINGWMIVVDVAKT 264 (274)
Q Consensus 251 ~l~G~~l~V~~a~~ 264 (274)
.|+|..|-|....+
T Consensus 85 ii~G~mIGV~Py~~ 98 (132)
T 3p3d_A 85 VFNGVLLGVIPYTK 98 (132)
T ss_dssp EETTEECEEEECCH
T ss_pred EeCcEEEEEEECCH
Confidence 99999888877653
No 391
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=96.43 E-value=0.0016 Score=59.08 Aligned_cols=56 Identities=14% Similarity=0.189 Sum_probs=42.3
Q ss_pred ccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHH
Q 024012 185 TKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKE 246 (274)
Q Consensus 185 ~~~lfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~d~~~g~~rG~aFV~F~s~~~A~~Ai~~ 246 (274)
.++|+|. .|..+++.+|.++|++||.|.++....+. | -||.|+|.+.+++..++..
T Consensus 53 ~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~--g---~~~~vef~~~~~~~~~~~~ 108 (464)
T 3pq1_A 53 QRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESF--G---LYAVVEFCQKESIGSLQNG 108 (464)
T ss_dssp HTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSS--S---EEEEEECC---CCHHHHSS
T ss_pred cceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccC--C---eEEEEEeCCHHHHHHHHhc
Confidence 5789997 69999999999999999999999776543 3 5999999999999877643
No 392
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=95.58 E-value=0.033 Score=40.66 Aligned_cols=61 Identities=18% Similarity=0.195 Sum_probs=47.9
Q ss_pred CcceeEEecCCCCCCCCHHHHHHHHHHHHHhhhCCcccceEEEecCCCCCCeEEeeeCCHHHHHHHHCCCCcee
Q 024012 74 TKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIYHVSWQSNFGFCCELDDECAQELTGVPGVLS 147 (274)
Q Consensus 74 l~~~~~~~~~p~~~~~t~~~L~~~F~~~l~~~~G~v~~v~i~~~~~g~srgfgFV~f~~~e~a~~a~~~~g~~~ 147 (274)
-+.|+.|..+|.. ....+.++|.++ |.|.+... .....+-.|.|.++.+|++|+..||.+.
T Consensus 23 ~~~wVtVFGFp~~---~~~~VL~~F~~~-----G~Iv~~~~-----~~~~NWihI~Y~s~~~A~rAL~kNG~ii 83 (119)
T 1wwh_A 23 DDTWVTVFGFPQA---SASYILLQFAQY-----GNILKHVM-----SNTGNWMHIRYQSKLQARKALSKDGRIF 83 (119)
T ss_dssp GGGEEEEECCCGG---GHHHHHHHHHTT-----SCEEEEEE-----CSSSSEEEEEESSHHHHHHHHTTTTCEE
T ss_pred CCCEEEEECCCHH---HHHHHHHHHHhh-----CcEEEecc-----CCCCCeEEEEeCCHHHHHHHHHhCCeEe
Confidence 3667777777754 566888889988 99976554 2346799999999999999999998754
No 393
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=95.23 E-value=0.033 Score=39.90 Aligned_cols=54 Identities=11% Similarity=-0.033 Sum_probs=41.0
Q ss_pred CCCHHHHHHHHHHHHHhhhCCcccceEEEecCCCCCCeEEeeeCCHHHH-HHHHCCCCce
Q 024012 88 VVTKAQMVDRYAQILTKVLGNEKDAQMCIYHVSWQSNFGFCCELDDECA-QELTGVPGVL 146 (274)
Q Consensus 88 ~~t~~~L~~~F~~~l~~~~G~v~~v~i~~~~~g~srgfgFV~f~~~e~a-~~a~~~~g~~ 146 (274)
+++++.|+.+..+.+...-|.++.+.+..+ -|=|+|+|.|...| ++++.++|..
T Consensus 32 tvndarIr~lve~~~~i~~g~i~KI~L~pD-----H~GAivef~d~~~AgKasLaL~G~e 86 (117)
T 2l9w_A 32 KVSPSLICQFLQEEIHINEKDIRKILLVSD-----FNGAIIIFRDSKFAAKMLMILNGSQ 86 (117)
T ss_dssp TCCHHHHHHHHHHHTCCCTTTCSEEEEETT-----TTEEEEECSCHHHHHHHHHHHSSEE
T ss_pred CCCHHHHHHHHhhhhccCccceeEEEEecC-----CCceEEEEccchhhHHHHhhcCCee
Confidence 799999999988764333366655555533 56799999999999 7778888864
No 394
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=94.34 E-value=0.068 Score=39.59 Aligned_cols=69 Identities=9% Similarity=0.039 Sum_probs=45.7
Q ss_pred cCCCcceeEEecCCCCCCCCHHHHHHHHHHHHHhhhCCcccce-EEE--------------ecCCCCCCeEEeeeCCHHH
Q 024012 71 LGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQ-MCI--------------YHVSWQSNFGFCCELDDEC 135 (274)
Q Consensus 71 vgnl~~~~~~~~~p~~~~~t~~~L~~~F~~~l~~~~G~v~~v~-i~~--------------~~~g~srgfgFV~f~~~e~ 135 (274)
+.|-..|++|-.+|. .....+.+.|+++ |.|.+-. +.. .+.-...++-.|+|.++.+
T Consensus 3 ~~~~e~~VtVFGFp~---~~~~~VI~~Fs~~-----G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~ 74 (132)
T 3p3d_A 3 LSNGELAILVFGYPE---TMANQVIAYFQEF-----GTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPAS 74 (132)
T ss_dssp -----CEEEEECCCG---GGHHHHHHHHGGG-----SCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHH
T ss_pred cccCceEEEEEecCH---HHHHHHHHHHHhh-----ceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHH
Confidence 345566778888875 3666888889977 9997622 211 0000135677999999999
Q ss_pred HHHHHCCCCcee
Q 024012 136 AQELTGVPGVLS 147 (274)
Q Consensus 136 a~~a~~~~g~~~ 147 (274)
|++|+..||.+.
T Consensus 75 A~rAL~~NG~ii 86 (132)
T 3p3d_A 75 AVDALLENGAVF 86 (132)
T ss_dssp HHHHHTTTTCEE
T ss_pred HHHHHHhCCeEe
Confidence 999999988753
No 395
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=93.20 E-value=0.29 Score=45.02 Aligned_cols=55 Identities=24% Similarity=0.339 Sum_probs=45.8
Q ss_pred ccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhC
Q 024012 185 TKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMN 248 (274)
Q Consensus 185 ~~~lfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~d~~~g~~rG~aFV~F~s~~~A~~Ai~~l~ 248 (274)
...++|+ +|..+...+|.++|+.||. .+|+.+-|. .|||.|.+.+.|..+++.++
T Consensus 440 ~~vl~v~-f~~~~~~~~i~~~fs~fg~-v~V~widdt-------~a~V~~~~~~~a~~~l~~~~ 494 (507)
T 3d45_A 440 DHVLHVT-FPKEWKTSDLYQLFSAFGN-IQISWIDDT-------SAFVSLSQPEQVQIAVNTSK 494 (507)
T ss_dssp GGEEEEE-CCTTCCHHHHHHHGGGGCC-CEEEECSSS-------EEEEECSCHHHHHHHHHHHT
T ss_pred CcEEEEe-CCCCCCHHHHHHHHHhcCC-EEEEEEcCC-------eEEEEECCHHHHHHHHHHHH
Confidence 4567776 9999999999999999995 466665443 79999999999999999884
No 396
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=90.82 E-value=0.91 Score=31.72 Aligned_cols=55 Identities=11% Similarity=0.050 Sum_probs=40.3
Q ss_pred CCceeeeecCCCcceeEEecCCCCCCCCHHHHHHHHHHHHHhhhCCcccceEEEecCCCCCCeEEeeeCCHHHHHHHHC
Q 024012 63 IGTTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIYHVSWQSNFGFCCELDDECAQELTG 141 (274)
Q Consensus 63 ~~s~~lf~vgnl~~~~~~~~~p~~~~~t~~~L~~~F~~~l~~~~G~v~~v~i~~~~~g~srgfgFV~f~~~e~a~~a~~ 141 (274)
+....+|.+ +.|. +....||.++|..+ |.| .|+.+. -.-|||.|.+++.|..|+.
T Consensus 13 p~r~HVf~l-~FP~-----------ewKt~DI~~lFs~f-----ggv-~I~Wid------DTsAlvvf~~~~~a~~al~ 67 (100)
T 1whv_A 13 PKRDHVLHV-TFPK-----------EWKTSDLYQLFSAF-----GNI-QISWID------DTSAFVSLSQPEQVQIAVN 67 (100)
T ss_dssp CCCCSEEEE-ECCT-----------TCCHHHHHHHHTTT-----CSC-CCEEEE------TTEEEEECSCHHHHHHHHH
T ss_pred CCCCeEEEE-eCCh-----------hhhhHHHHHHhhcc-----CCE-EEEEEc------CCeEEEEecCHHHHHHHHH
Confidence 344556657 6666 58999999999966 854 344442 3589999999999977765
No 397
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=89.95 E-value=0.13 Score=46.52 Aligned_cols=57 Identities=7% Similarity=0.083 Sum_probs=39.1
Q ss_pred ceeeeecCCCcceeEEecCCCCCCCCHHHHHHHHHHHHHhhhCCcccceEEEecCCCCCCeEEeeeCCHHHHHHHHCCC
Q 024012 65 TTLLFPLGTTKHWLVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQMCIYHVSWQSNFGFCCELDDECAQELTGVP 143 (274)
Q Consensus 65 s~~lf~vgnl~~~~~~~~~p~~~~~t~~~L~~~F~~~l~~~~G~v~~v~i~~~~~g~srgfgFV~f~~~e~a~~a~~~~ 143 (274)
.+++| |. .|. .+++.+|.++|.++ |.|.++.+..+ . .-||.|+|.+.+++++++...
T Consensus 53 ~rsv~-v~-~~~-----------~~~~~~l~~y~~~~-----g~i~~~~~~~~-~---g~~~~vef~~~~~~~~~~~~~ 109 (464)
T 3pq1_A 53 QRTVL-IH-CPE-----------KISENKFLKYLSQF-----GPINNHFFYES-F---GLYAVVEFCQKESIGSLQNGT 109 (464)
T ss_dssp HTEEE-EE-ECC-----------C---CHHHHHHGGG-----SCCCCEEEECS-S---SEEEEEECC---CCHHHHSSC
T ss_pred cceEE-EE-cCC-----------CCCHHHHHHHHHhc-----CCcceEEEEcc-C---CeEEEEEeCCHHHHHHHHhcc
Confidence 34677 65 455 59999999999977 99988887732 1 259999999999999887653
No 398
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=72.45 E-value=4.9 Score=26.16 Aligned_cols=68 Identities=16% Similarity=0.243 Sum_probs=41.7
Q ss_pred EEEEc-CCCCCCCHHHHHHHHhccCC-----eEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceeCCEEeEEE
Q 024012 187 KLFVT-GLSFYTSEKTLRAAFEGFGE-----LVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEMNGKIINGWMIVVD 260 (274)
Q Consensus 187 ~lfV~-nLp~~~te~~L~~~F~~fG~-----i~~v~i~~d~~~g~~rG~aFV~F~s~~~A~~Ai~~l~g~~l~G~~l~V~ 260 (274)
++||. |--..++..+|..++..-+. |=.+.|..+ |.||+-.. +.|..+++.|++..+.|+.+.++
T Consensus 2 ~~~i~~Grk~~~~p~~ivg~i~~~~gi~~~~IG~I~i~d~--------~s~v~v~~-~~~~~~~~~l~~~~i~g~~~~v~ 72 (76)
T 2g0c_A 2 KLYFNGGKKKKIRAVDFVGTIAKIDGVSADDIGIITIMDN--------ASYVEILN-GKGPHVLKVMKNTTVKGKQLKVN 72 (76)
T ss_dssp EEEESCCCC----CHHHHHHHHTSTTCCGGGEEEEEECSS--------CEEEEECT-TCHHHHHHHHTTCCC---CCCEE
T ss_pred EEEEeCCCccCCCHHHHHHHHHHccCCChhhccEEEEeCC--------cEEEEECH-HHHHHHHHHhccccCcCceEEEE
Confidence 35552 22334566677666654433 456666433 88999875 46788999999999999999998
Q ss_pred eec
Q 024012 261 VAK 263 (274)
Q Consensus 261 ~a~ 263 (274)
.++
T Consensus 73 ~~~ 75 (76)
T 2g0c_A 73 KAN 75 (76)
T ss_dssp ECC
T ss_pred ECC
Confidence 764
No 399
>3cnq_P Subtilisin BPN'; uncleaved, proenzyme, substrate complex, hydrolase, metal- binding, protease, secreted, serine protease, sporulation; 1.71A {Bacillus amyloliquefaciens} PDB: 3bgo_P 3co0_P 1spb_P 1scj_B
Probab=71.12 E-value=5.2 Score=26.32 Aligned_cols=34 Identities=24% Similarity=0.245 Sum_probs=29.2
Q ss_pred cCCcceeeeecChhhHHHHhcCCceeEeccCCCC
Q 024012 8 CDTHFGFCCNVDEETSRELARLPGVLTVRPDPDY 41 (274)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 41 (274)
|+..-||..+++++...+|...|+|..|-||...
T Consensus 40 y~~~~Gfaa~l~~~~~~~L~~~p~V~~Ve~D~~v 73 (80)
T 3cnq_P 40 FKYVDAASATLNEKAVEELKKDPSVAYVEEDKLY 73 (80)
T ss_dssp CSSSSEEEEECCHHHHHHHHTCTTEEEEEECCEE
T ss_pred EcccEEEEEEcCHHHHHHHHhCCCccEEEeCcEE
Confidence 4446689999999999999999999999988653
No 400
>3u7d_B Protein HEG homolog 1; FERM domain, RAP1 effector, membrane protein cytoplasmic TAI protein binding; 2.49A {Homo sapiens}
Probab=69.14 E-value=1.3 Score=21.96 Aligned_cols=11 Identities=27% Similarity=0.884 Sum_probs=10.5
Q ss_pred ceeccccCCcc
Q 024012 2 CIYDASCDTHF 12 (274)
Q Consensus 2 ~~~~~~~~~~~ 12 (274)
|||-.-||.+|
T Consensus 5 ciypgqynpsf 15 (26)
T 3u7d_B 5 CIFPGQYNPSF 15 (26)
T ss_pred ccccCccCccc
Confidence 99999999998
No 401
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=59.63 E-value=4.1 Score=28.50 Aligned_cols=42 Identities=10% Similarity=0.071 Sum_probs=31.5
Q ss_pred CCCHHHHHHHHHHHHHhhhCCcccceEEEecCCCCCCeEEeeeCCHHHHHHHHC
Q 024012 88 VVTKAQMVDRYAQILTKVLGNEKDAQMCIYHVSWQSNFGFCCELDDECAQELTG 141 (274)
Q Consensus 88 ~~t~~~L~~~F~~~l~~~~G~v~~v~i~~~~~g~srgfgFV~f~~~e~a~~a~~ 141 (274)
+....||.++|..+ |.+ .|+.+ + -.-|||.|.+++.|..|+.
T Consensus 16 ewKt~Di~~lFs~f-----ggv-~I~Wi-d-----DTsAlvvf~~~~~a~~al~ 57 (101)
T 3ctr_A 16 EWKTSDLYQLFSAF-----GNI-QISWI-D-----DTSAFVSLSQPEQVKIAVN 57 (101)
T ss_dssp TCCHHHHHHHTTTS-----EEE-EEEEE-E-----TTEEEEEEEEECHHHHHHH
T ss_pred hhhhHHHHHHHhcc-----CCE-EEEEE-c-----CCeEEEEecCHHHHHHHHH
Confidence 58899999999966 843 23333 2 4589999999999977765
No 402
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=55.26 E-value=14 Score=25.90 Aligned_cols=44 Identities=7% Similarity=-0.102 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHhhhCCcccceEEEecCCCCCCeEEeeeCCHHHHHHH-HCCCCc
Q 024012 92 AQMVDRYAQILTKVLGNEKDAQMCIYHVSWQSNFGFCCELDDECAQEL-TGVPGV 145 (274)
Q Consensus 92 ~~L~~~F~~~l~~~~G~v~~v~i~~~~~g~srgfgFV~f~~~e~a~~a-~~~~g~ 145 (274)
++++++|.++ +++....... |=.=.-|.|.++++|.+| +.|++.
T Consensus 25 ~~~e~Lf~~~-----~~~~tF~~lk-----SFRRirv~F~~~~~A~~AR~~Lh~~ 69 (104)
T 1wey_A 25 AKFESLFRTY-----DKDTTFQYFK-----SFKRVRINFSNPLSAADARLRLHKT 69 (104)
T ss_dssp HHHHHHHHTT-----CSSCEEEEET-----TTTEEEEECSSTTHHHHHHHTSTTS
T ss_pred HHHHHHHHhh-----CcCcceeecC-----cceEEEEEeCChHHHHHHHHHhccc
Confidence 4556666655 7776555441 111246889999999444 566654
No 403
>2w2n_P Proprotein convertase subtilisin/kexin type 9; hydrolase-receptor complex, PCSK9, proprotein converta low-density lipoprotein receptor, EGF; 2.30A {Homo sapiens} PDB: 2w2m_P 2w2o_P 2w2p_P 2w2q_P 2xtj_P
Probab=50.02 E-value=9.9 Score=27.07 Aligned_cols=31 Identities=19% Similarity=0.224 Sum_probs=27.7
Q ss_pred CcceeeeecChhhHHHHhcCCceeEeccCCC
Q 024012 10 THFGFCCNVDEETSRELARLPGVLTVRPDPD 40 (274)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 40 (274)
..-||...++++...+|...|+|..|-||+.
T Consensus 80 ~~~GFaa~Lt~~~~~~L~~~P~V~~VE~D~~ 110 (114)
T 2w2n_P 80 LLPGFLVKMSGDLLELALKLPHVDYIEEDSS 110 (114)
T ss_dssp SSSEEEEECCGGGHHHHHTSTTEEEEEEEEE
T ss_pred cceEEEEEcCHHHHHHHHcCCCccEEEeCce
Confidence 5679999999999999999999999988754
No 404
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=41.05 E-value=66 Score=24.70 Aligned_cols=49 Identities=22% Similarity=0.336 Sum_probs=34.1
Q ss_pred EEEEcCCCC-C--------CCHHHHHHHH--hccCCeEEEEEEecCCCCCcceEEEEEeCCHH
Q 024012 187 KLFVTGLSF-Y--------TSEKTLRAAF--EGFGELVEVKIIMDKISKRSKGYAFIEYTTEE 238 (274)
Q Consensus 187 ~lfV~nLp~-~--------~te~~L~~~F--~~fG~i~~v~i~~d~~~g~~rG~aFV~F~s~~ 238 (274)
.+.|-|+|. . .+..+|++.| +.|.++. |+.+.++ ..++|+|.|.|.+--
T Consensus 14 mgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~k-v~~l~~~--~Gh~g~aIv~F~~dw 73 (172)
T 4e8u_A 14 KGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTR-VRPLWNY--LGHSGTAIVEFNKDW 73 (172)
T ss_dssp EEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCSE-EEEEECS--SBEEEEEEEECCSSH
T ss_pred EEEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCce-eEecccC--CCCceeEEEEecCCh
Confidence 455667765 1 3457899977 9998865 5555554 347899999998743
No 405
>2z30_B TK-subtilisin; thermococcus kodakaraensis, hydrolase; 1.65A {Thermococcus kodakarensis} PDB: 2z2y_B 3a3p_B 2z56_B 2z58_B 2z57_B 3a3n_B 3a3o_B
Probab=37.88 E-value=45 Score=20.77 Aligned_cols=33 Identities=21% Similarity=0.275 Sum_probs=28.2
Q ss_pred cCCcceeeeecChhhHHHHhcCCceeEeccCCC
Q 024012 8 CDTHFGFCCNVDEETSRELARLPGVLTVRPDPD 40 (274)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 40 (274)
|.-.=++.+++.+++...|...|++..+-+|..
T Consensus 29 ~~~I~a~~~~lp~~~~~~L~~~p~V~yVE~D~~ 61 (65)
T 2z30_B 29 FKLIPAVVVDVPANAVGKLKKMPGVEKVEFDHQ 61 (65)
T ss_dssp CSSSSEEEEEECGGGHHHHHTSTTEEEEEECCE
T ss_pred ecCCcEEEEEeCHHHHHHHhcCCCceEEecCcE
Confidence 555667899999999999999999999988753
No 406
>2qtw_A Proprotein convertase subtilisin/kexin type 9 Pro; coronary heart disease, hypercholest low density lipoprotein receptor, autocatalytic cleavage; HET: NAG; 1.90A {Homo sapiens} PDB: 3m0c_A 2pmw_A 3h42_A 3bps_P 3gcw_P 3gcx_P 3p5b_P 3p5c_P
Probab=37.57 E-value=22 Score=25.68 Aligned_cols=31 Identities=19% Similarity=0.224 Sum_probs=27.6
Q ss_pred CcceeeeecChhhHHHHhcCCceeEeccCCC
Q 024012 10 THFGFCCNVDEETSRELARLPGVLTVRPDPD 40 (274)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 40 (274)
..-||...++++....|...|+|..|-||..
T Consensus 90 ~~~GFaa~l~~~~~~~L~~~p~V~~VE~D~~ 120 (124)
T 2qtw_A 90 LLPGFLVKMSGDLLELALKLPHVDYIEEDSS 120 (124)
T ss_dssp SSCEEEEECCGGGHHHHHTSTTEEEEEEEEE
T ss_pred cceEEEEEcCHHHHHHHHcCCCCcEEEeCce
Confidence 5669999999999999999999999988753
No 407
>3mfb_A Uncharacterized protein; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.20A {Erwinia carotovora}
Probab=36.08 E-value=65 Score=24.33 Aligned_cols=37 Identities=16% Similarity=0.166 Sum_probs=29.4
Q ss_pred CCHHHHHHHHhccCCeE---EEEEEecCCCCCcceEEEEE
Q 024012 197 TSEKTLRAAFEGFGELV---EVKIIMDKISKRSKGYAFIE 233 (274)
Q Consensus 197 ~te~~L~~~F~~fG~i~---~v~i~~d~~~g~~rG~aFV~ 233 (274)
.|+++|+++-.+.|++. +..+..|..+|..+.+||-+
T Consensus 3 ~t~~~L~~~A~~~gta~trVR~~~~~de~~G~~~v~gv~T 42 (157)
T 3mfb_A 3 LTPEKLLEAANKQGTVPSRVRYQWMEDEETGRLKAVGYHT 42 (157)
T ss_dssp CCHHHHHHHHHTTCEEEBSEEEEEEECTTTCCEEEEEEEC
T ss_pred cCHHHHHHHHHhCCcccccEEEEEEecCCCCcEEEEEEEC
Confidence 58999999999999875 56666675589888888753
No 408
>1v5i_B POIA1, IA-1=serine proteinase inhibitor; protease-inhibitor complex, subtilisin, hydrolase-Pro binding complex; 1.50A {Pleurotus ostreatus} SCOP: d.58.3.2 PDB: 1itp_A
Probab=34.70 E-value=34 Score=22.10 Aligned_cols=32 Identities=13% Similarity=0.148 Sum_probs=27.6
Q ss_pred CCcceeeeecChhhHHHHhcC--CceeEeccCCC
Q 024012 9 DTHFGFCCNVDEETSRELARL--PGVLTVRPDPD 40 (274)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 40 (274)
...-||...+++++..+|... |.|..|-+|+.
T Consensus 39 ~~~~Gfa~~~~~~~l~~l~~~~~p~V~~VE~D~~ 72 (76)
T 1v5i_B 39 PGMKGFAGELTPQSLTKFQGLQGDLIDSIEEDHV 72 (76)
T ss_dssp TTEEEEEEEECHHHHHHHHHTBTTTEEEEEECCE
T ss_pred CceeEEEEEcCHHHHHHHHhcCCCCCcEEcCCcE
Confidence 456799999999999999999 78999988764
No 409
>2hiq_A Hypothetical protein YDHR; hypothetical protein JW1657, structural genomics, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: d.58.4.12 PDB: 1wd6_A
Probab=30.32 E-value=1.3e+02 Score=21.28 Aligned_cols=65 Identities=9% Similarity=-0.020 Sum_probs=41.4
Q ss_pred eEEecCCCCCCCCHHHHHHHHHHHHHhhhCCcccce-EEEecCCCCCCeEEeeeCCHHHHHHHHCCC
Q 024012 78 LVRMDKPGVGVVTKAQMVDRYAQILTKVLGNEKDAQ-MCIYHVSWQSNFGFCCELDDECAQELTGVP 143 (274)
Q Consensus 78 ~~~~~~p~~~~~t~~~L~~~F~~~l~~~~G~v~~v~-i~~~~~g~srgfgFV~f~~~e~a~~a~~~~ 143 (274)
++..++|.++.. -+++.+.|.+.-.+.-+..-=+. +...+......=|+=.|.+.++|++.+++.
T Consensus 11 llqV~F~~~gP~-geE~~~~f~~lA~si~~epGLiwKiWte~e~t~~aGGiYLFes~~~AeaY~~~h 76 (113)
T 2hiq_A 11 LLQLHFAFNGPF-GDAMAEQLKPLAESINQEPGFLWKVWTESEKNHEAGGIYLFTDEKSALAYLEKH 76 (113)
T ss_dssp EEEEEEECCCCC-HHHHHHHSHHHHHHHTTSTTEEEEEEEEETTTTEEEEEEEESSHHHHHHHHHHH
T ss_pred eEEEEecCCCch-HHHHHHHHHHHHHHHhcCCCcEEEEEEEcCCCCeeeEEEEeCCHHHHHHHHHHH
Confidence 455666666565 78899999976444433332222 222333444566788899999998877653
No 410
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=24.77 E-value=1.3e+02 Score=27.25 Aligned_cols=41 Identities=15% Similarity=0.146 Sum_probs=28.8
Q ss_pred CCCHHHHHHHHHHHHHhhhCCcccceEEEecCCCCCCeEEeeeCCHHHHHHHH
Q 024012 88 VVTKAQMVDRYAQILTKVLGNEKDAQMCIYHVSWQSNFGFCCELDDECAQELT 140 (274)
Q Consensus 88 ~~t~~~L~~~F~~~l~~~~G~v~~v~i~~~~~g~srgfgFV~f~~~e~a~~a~ 140 (274)
.....+|.+.|+.+ |.+ .|..- +...|||.|.+.+.|..++
T Consensus 450 ~~~~~~i~~~fs~f-----g~v---~V~wi----ddt~a~V~~~~~~~a~~~l 490 (507)
T 3d45_A 450 EWKTSDLYQLFSAF-----GNI---QISWI----DDTSAFVSLSQPEQVQIAV 490 (507)
T ss_dssp TCCHHHHHHHGGGG-----CCC---EEEEC----SSSEEEEECSCHHHHHHHH
T ss_pred CCCHHHHHHHHHhc-----CCE---EEEEE----cCCeEEEEECCHHHHHHHH
Confidence 35778999999844 843 33321 2456999999999996655
No 411
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=24.38 E-value=1.7e+02 Score=19.77 Aligned_cols=55 Identities=15% Similarity=0.193 Sum_probs=43.2
Q ss_pred ccEEEEcCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHh
Q 024012 185 TKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEM 247 (274)
Q Consensus 185 ~~~lfV~nLp~~~te~~L~~~F~~fG~i~~v~i~~d~~~g~~rG~aFV~F~s~~~A~~Ai~~l 247 (274)
++-+-|-|+|..+-..++--.....|---.+..+ .|.|.+.|.+.++..-|++.|
T Consensus 12 nclikiinipqgtlkaevvlavrhlgyefycdyi--------dgqamirfqnsdeqrlaiqkl 66 (129)
T 4eyt_A 12 NCLIKIINIPQGTLKAEVVLAVRHLGYEFYCDYI--------DGQAMIRFQNSDEQRLAIQKL 66 (129)
T ss_dssp SCEEEEECCCTTCCHHHHHHHHHTTCCCEEEEEC--------SSCEEEEESSHHHHHHHHHHH
T ss_pred CcEEEEEecCCCceeeeeEEeehhcCeeEeeeee--------cCeeEEEecCChHHHHHHHHH
Confidence 5667888999999888877666766654455443 246999999999999999987
No 412
>4bby_A Alkyldihydroxyacetonephosphate synthase, peroxiso; transferase, plasmalogen, flavin, peroxisome; HET: FAD; 1.90A {Cavia porcellus} PDB: 4bc9_A* 4bca_A* 4bc7_A*
Probab=22.69 E-value=99 Score=29.00 Aligned_cols=54 Identities=15% Similarity=0.244 Sum_probs=39.5
Q ss_pred CCCCCCHHHHHHHH----hccCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHh
Q 024012 193 LSFYTSEKTLRAAF----EGFGELVEVKIIMDKISKRSKGYAFIEYTTEEAASAALKEM 247 (274)
Q Consensus 193 Lp~~~te~~L~~~F----~~fG~i~~v~i~~d~~~g~~rG~aFV~F~s~~~A~~Ai~~l 247 (274)
.+.+.+--||..+| ..+|-|+++.+-.-+ -...+.++++.|.+.++|..|+..+
T Consensus 351 ~~k~~aGyDL~~L~iGSEGTLGIITeatLrL~P-~P~~~~~~~~~f~d~~~a~~av~~i 408 (658)
T 4bby_A 351 GPRMSTGPDIHHFIMGSEGTLGVITEATIKIRP-TPEYQKYGSVAFPNFEQGVACLREI 408 (658)
T ss_dssp CSSCCSSSCTHHHHTTCTTSSCEEEEEEEECEE-CCSEEEEEEEEESSHHHHHHHHHHH
T ss_pred ccccCCCcCHHHHhccCCCcCcceeeeeeeecc-CCccccccccccCCchhhhhhHHHH
Confidence 44455555788888 367889988665444 2345668899999999999988776
No 413
>2e5q_A PHD finger protein 19; tudor domain, isoform B, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=21.30 E-value=22 Score=22.23 Aligned_cols=14 Identities=14% Similarity=-0.073 Sum_probs=10.9
Q ss_pred CCCCCeEEeeeCCH
Q 024012 120 SWQSNFGFCCELDD 133 (274)
Q Consensus 120 g~srgfgFV~f~~~ 133 (274)
...++.+||.|.|.
T Consensus 32 ~~~~~~ClV~FeD~ 45 (63)
T 2e5q_A 32 SSSKQSCLVTFEDN 45 (63)
T ss_dssp CSTTSEEEEEETTS
T ss_pred ecCCCEEEEEEccC
Confidence 33488999999875
No 414
>3cam_A Cold-shock domain family protein; cold shock protein, chain SWAP, STRU genomics, oxford protein production facility, OPPF, gene RE; 2.60A {Neisseria meningitidis MC58}
Probab=21.05 E-value=37 Score=21.46 Aligned_cols=13 Identities=23% Similarity=0.340 Sum_probs=9.5
Q ss_pred CCCCCeEEeeeCC
Q 024012 120 SWQSNFGFCCELD 132 (274)
Q Consensus 120 g~srgfgFV~f~~ 132 (274)
...||||||+-.+
T Consensus 10 n~~kGfGFI~~~~ 22 (67)
T 3cam_A 10 NDAKGFGFITPDE 22 (67)
T ss_dssp ETTTTEEEEEETT
T ss_pred ECCCCeEEEecCC
Confidence 3459999997543
No 415
>3ts2_A Protein LIN-28 homolog A; microrna biogenesis, protein-RNA complex, PRE-element, CCHC knuckle; HET: GMP; 2.01A {Mus musculus} PDB: 3trz_A* 3ts0_A*
Probab=20.84 E-value=12 Score=28.14 Aligned_cols=28 Identities=18% Similarity=0.186 Sum_probs=15.2
Q ss_pred HHHHHHHhccCCeEEEEEEecCCCCCcceEEEEEeC
Q 024012 200 KTLRAAFEGFGELVEVKIIMDKISKRSKGYAFIEYT 235 (274)
Q Consensus 200 ~~L~~~F~~fG~i~~v~i~~d~~~g~~rG~aFV~F~ 235 (274)
+++.++|...|.|+.. .+ .+|||||.-.
T Consensus 2 ~~~~~l~~~~G~Vkwf---n~-----~kGfGFI~~~ 29 (148)
T 3ts2_A 2 ADEPQLLHGAGICKWF---NV-----RMGFGFLSMT 29 (148)
T ss_dssp ----CCEEEEEEEEEE---ET-----TTTEEEEEEE
T ss_pred CcccccccceeEEEEE---EC-----CCCeeEEeeC
Confidence 3455566666665533 22 3789999865
No 416
>1c9o_A CSPB, cold-shock protein; beta barrel, homodimer, transcription; 1.17A {Bacillus caldolyticus} SCOP: b.40.4.5 PDB: 2hax_A 1hz9_A 1hzb_A 1i5f_A 1hza_A 1hzc_A 3pf4_A 1csq_A 1nmf_A 1nmg_A 1csp_A 2f52_A 2es2_A 3pf5_A 2i5m_X 2i5l_X
Probab=20.42 E-value=41 Score=21.12 Aligned_cols=12 Identities=17% Similarity=0.241 Sum_probs=9.2
Q ss_pred CCCCeEEeeeCC
Q 024012 121 WQSNFGFCCELD 132 (274)
Q Consensus 121 ~srgfgFV~f~~ 132 (274)
..||||||+-.+
T Consensus 11 ~~kGfGFI~~~~ 22 (66)
T 1c9o_A 11 NEKGYGFIEVEG 22 (66)
T ss_dssp TTTTEEEEEETT
T ss_pred CCCCeEEEecCC
Confidence 458999997654
Done!