Query 024013
Match_columns 274
No_of_seqs 188 out of 1457
Neff 6.0
Searched_HMMs 46136
Date Fri Mar 29 08:17:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024013.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024013hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0398 Uncharacterized conser 100.0 5.7E-28 1.2E-32 216.6 19.9 150 122-271 25-176 (223)
2 PF09335 SNARE_assoc: SNARE as 99.8 1.4E-19 3E-24 145.3 12.6 107 162-268 1-110 (123)
3 PRK10847 hypothetical protein; 99.7 4.8E-17 1E-21 145.4 14.1 133 134-267 17-163 (219)
4 COG0586 DedA Uncharacterized m 99.7 6.8E-17 1.5E-21 143.5 14.4 109 158-267 32-149 (208)
5 COG1238 Predicted membrane pro 99.4 4.1E-12 9E-17 108.9 13.5 131 137-271 12-146 (161)
6 KOG3140 Predicted membrane pro 99.4 1.1E-12 2.3E-17 121.1 9.2 134 133-268 83-220 (275)
7 PF06695 Sm_multidrug_ex: Puta 96.2 0.055 1.2E-06 44.3 9.9 93 175-268 14-115 (121)
8 PLN02953 phosphatidate cytidyl 92.8 2 4.4E-05 42.1 12.3 30 89-118 87-116 (403)
9 PF06695 Sm_multidrug_ex: Puta 89.6 2.3 4.9E-05 34.8 7.9 53 134-193 64-120 (121)
10 COG0398 Uncharacterized conser 86.1 24 0.00051 31.8 13.0 81 122-206 32-114 (223)
11 PRK13109 flhB flagellar biosyn 85.9 4.5 9.7E-05 39.2 8.7 12 102-113 32-43 (358)
12 PRK01844 hypothetical protein; 83.3 3.5 7.7E-05 31.0 5.3 34 177-210 3-36 (72)
13 PF08006 DUF1700: Protein of u 79.6 25 0.00055 30.1 10.3 26 178-204 141-166 (181)
14 PRK11677 hypothetical protein; 77.9 6 0.00013 33.2 5.6 24 181-204 3-26 (134)
15 PRK00523 hypothetical protein; 76.3 8.1 0.00017 29.1 5.2 29 181-209 8-36 (72)
16 PRK05702 flhB flagellar biosyn 76.3 16 0.00034 35.5 8.7 15 99-113 28-42 (359)
17 COG1377 FlhB Flagellar biosynt 75.7 12 0.00026 36.3 7.7 14 161-174 93-106 (363)
18 PF07155 ECF-ribofla_trS: ECF- 75.4 9.2 0.0002 32.2 6.2 32 164-195 38-69 (169)
19 PF05915 DUF872: Eukaryotic pr 70.7 8.5 0.00018 31.4 4.6 8 159-166 85-92 (115)
20 PRK12468 flhB flagellar biosyn 70.4 25 0.00054 34.4 8.6 15 100-114 29-43 (386)
21 COG2426 Predicted membrane pro 70.1 14 0.00029 31.0 5.7 56 133-195 73-132 (142)
22 PF11139 DUF2910: Protein of u 68.9 47 0.001 29.2 9.4 19 215-233 180-198 (214)
23 COG3763 Uncharacterized protei 68.6 15 0.00032 27.5 5.1 32 177-208 3-34 (71)
24 PF03672 UPF0154: Uncharacteri 68.2 8.8 0.00019 28.2 3.8 26 184-209 3-28 (64)
25 TIGR02831 spo_II_M stage II sp 68.0 86 0.0019 27.6 14.7 25 159-183 87-112 (200)
26 PRK13661 hypothetical protein; 64.9 37 0.0008 29.8 7.8 31 164-194 40-70 (182)
27 PF08372 PRT_C: Plant phosphor 64.4 76 0.0017 27.3 9.4 7 161-167 113-119 (156)
28 PF09335 SNARE_assoc: SNARE as 62.9 69 0.0015 24.8 10.8 60 134-199 61-121 (123)
29 TIGR00261 traB pheromone shutd 61.3 1.3E+02 0.0028 29.5 11.5 44 103-147 240-283 (380)
30 PF02417 Chromate_transp: Chro 61.3 1E+02 0.0022 26.1 10.6 64 140-203 33-98 (169)
31 PRK05415 hypothetical protein; 61.3 42 0.00091 32.4 8.1 22 219-240 201-222 (341)
32 PF13197 DUF4013: Protein of u 60.6 1E+02 0.0022 25.9 9.8 15 110-124 9-23 (169)
33 TIGR02359 thiW thiW protein. L 60.3 15 0.00033 31.6 4.4 31 164-194 34-64 (160)
34 PRK12785 fliL flagellar basal 59.6 2.6 5.7E-05 36.2 -0.4 7 219-225 145-151 (166)
35 PF06295 DUF1043: Protein of u 59.5 15 0.00032 30.3 4.1 22 184-205 2-23 (128)
36 COG5336 Uncharacterized protei 59.5 30 0.00065 28.2 5.6 16 140-155 70-85 (116)
37 PF04246 RseC_MucC: Positive r 58.4 31 0.00067 28.2 5.9 25 181-205 96-120 (135)
38 PF11947 DUF3464: Protein of u 57.9 66 0.0014 27.6 7.9 15 162-176 94-108 (153)
39 PF07332 DUF1469: Protein of u 57.8 93 0.002 24.6 9.4 27 176-202 70-96 (121)
40 COG2981 CysZ Uncharacterized p 57.1 48 0.001 30.5 7.3 20 122-141 44-63 (250)
41 COG0586 DedA Uncharacterized m 56.7 95 0.0021 27.4 9.1 67 130-205 98-167 (208)
42 PF10136 SpecificRecomb: Site- 55.5 1.4E+02 0.0031 31.3 11.3 22 205-227 507-528 (643)
43 PF11990 DUF3487: Protein of u 55.1 1.2E+02 0.0025 24.9 9.3 12 217-228 86-97 (121)
44 PF09945 DUF2177: Predicted me 55.1 1.2E+02 0.0027 25.1 11.6 46 132-177 32-85 (128)
45 COG3768 Predicted membrane pro 55.0 83 0.0018 30.3 8.6 24 88-111 51-74 (350)
46 COG4852 Predicted membrane pro 52.5 1.3E+02 0.0029 24.8 10.8 45 133-177 32-83 (134)
47 PF07330 DUF1467: Protein of u 52.5 51 0.0011 25.5 5.8 19 89-107 39-57 (85)
48 PRK12768 CysZ-like protein; Re 52.0 1.9E+02 0.0041 26.4 11.6 21 182-202 84-104 (240)
49 COG3086 RseC Positive regulato 51.9 47 0.001 28.4 5.9 24 182-205 104-127 (150)
50 PRK10862 SoxR reducing system 51.9 35 0.00077 29.0 5.3 24 182-205 104-127 (154)
51 PRK12821 aspartyl/glutamyl-tRN 51.7 2.1E+02 0.0046 28.9 11.2 27 165-191 99-125 (477)
52 TIGR03750 conj_TIGR03750 conju 50.8 1.2E+02 0.0026 24.7 7.9 12 217-228 83-94 (111)
53 PF12794 MscS_TM: Mechanosensi 50.6 24 0.00051 33.7 4.5 33 102-135 305-337 (340)
54 PF14163 SieB: Superinfection 50.5 81 0.0018 26.2 7.3 28 158-185 11-42 (151)
55 COG4720 Predicted membrane pro 50.0 42 0.00091 29.5 5.5 54 143-196 13-72 (177)
56 KOG2563 Permease of the major 50.0 94 0.002 31.4 8.6 10 230-239 187-196 (480)
57 COG3105 Uncharacterized protei 49.4 47 0.001 27.9 5.4 26 179-204 6-31 (138)
58 PF12822 DUF3816: Protein of u 47.7 18 0.0004 30.2 2.9 31 164-194 31-61 (172)
59 COG4732 Predicted membrane pro 47.6 32 0.00069 29.7 4.3 24 165-188 41-64 (177)
60 COG2426 Predicted membrane pro 47.2 1.7E+02 0.0037 24.6 8.3 46 221-267 76-124 (142)
61 COG1580 FliL Flagellar basal b 46.1 23 0.00049 30.5 3.2 31 94-124 11-41 (159)
62 COG2839 Uncharacterized protei 44.0 1.9E+02 0.004 25.0 8.3 28 150-177 13-40 (160)
63 KOG3249 Uncharacterized conser 43.7 1.3E+02 0.0029 26.2 7.5 36 60-98 48-83 (181)
64 PF15451 DUF4632: Domain of un 43.6 30 0.00066 25.3 3.0 14 93-106 28-41 (71)
65 PF11449 DUF2899: Protein of u 41.6 2.4E+02 0.0051 26.8 9.5 17 134-150 209-225 (298)
66 KOG2533 Permease of the major 41.0 1.8E+02 0.0038 29.4 9.2 12 194-205 155-166 (495)
67 PF06305 DUF1049: Protein of u 40.1 1.3E+02 0.0027 21.3 6.0 11 215-225 55-65 (68)
68 PRK11285 araH L-arabinose tran 40.0 3.3E+02 0.0072 25.8 13.3 12 189-200 120-131 (333)
69 PF01148 CTP_transf_1: Cytidyl 38.9 2.3E+02 0.005 24.8 8.8 36 182-218 133-168 (259)
70 PRK10847 hypothetical protein; 38.6 1.4E+02 0.0031 26.4 7.4 64 132-204 114-180 (219)
71 PLN03100 Permease subunit of E 37.7 3.6E+02 0.0078 25.5 10.6 13 226-238 170-182 (292)
72 PF03616 Glt_symporter: Sodium 37.7 3.9E+02 0.0084 25.9 13.1 10 197-206 326-335 (368)
73 PRK11268 pstA phosphate transp 37.2 2.9E+02 0.0063 25.4 9.4 16 186-201 96-111 (295)
74 PRK07021 fliL flagellar basal 37.2 47 0.001 28.2 3.9 8 218-225 136-143 (162)
75 PRK14472 F0F1 ATP synthase sub 36.9 59 0.0013 27.8 4.4 43 167-212 6-48 (175)
76 PF11085 YqhR: Conserved membr 36.5 1.5E+02 0.0032 26.0 6.8 8 110-117 25-32 (173)
77 TIGR00771 DcuC c4-dicarboxylat 36.2 4.1E+02 0.009 25.8 18.2 33 232-266 348-381 (388)
78 PF06738 DUF1212: Protein of u 36.2 2.2E+02 0.0048 24.2 8.0 24 178-201 125-148 (193)
79 COG1972 NupC Nucleoside permea 36.1 95 0.002 30.6 6.1 19 59-77 201-221 (404)
80 PRK12773 flhB flagellar biosyn 36.1 1.7E+02 0.0037 30.7 8.2 12 102-113 322-333 (646)
81 PF09512 ThiW: Thiamine-precur 35.9 68 0.0015 27.5 4.5 16 166-181 33-48 (150)
82 TIGR00937 2A51 chromate transp 35.8 3.5E+02 0.0076 26.2 10.0 64 139-202 233-297 (368)
83 PRK11281 hypothetical protein; 35.6 4.4E+02 0.0095 29.7 11.7 17 161-177 553-569 (1113)
84 PF12270 Cyt_c_ox_IV: Cytochro 34.9 2.7E+02 0.006 23.4 7.9 28 88-115 77-104 (137)
85 PRK10929 putative mechanosensi 33.4 5E+02 0.011 29.2 11.7 31 162-192 532-563 (1109)
86 PF13829 DUF4191: Domain of un 33.1 3.8E+02 0.0082 24.4 12.1 42 166-209 40-82 (224)
87 PF06897 DUF1269: Protein of u 32.6 1.5E+02 0.0033 23.4 5.9 13 216-228 67-79 (102)
88 KOG3140 Predicted membrane pro 32.5 2.3E+02 0.005 26.6 7.9 109 143-255 44-154 (275)
89 PF12794 MscS_TM: Mechanosensi 32.4 2.8E+02 0.006 26.4 8.7 16 161-176 57-72 (340)
90 PF05684 DUF819: Protein of un 31.8 4.9E+02 0.011 25.3 12.0 18 188-205 303-320 (378)
91 COG4721 ABC-type cobalt transp 31.5 2.2E+02 0.0047 25.1 6.9 58 150-207 56-120 (192)
92 COG2966 Uncharacterized conser 31.1 4.2E+02 0.0091 24.3 9.8 36 175-210 144-179 (250)
93 COG1280 RhtB Putative threonin 30.8 2.3E+02 0.005 24.8 7.3 32 149-180 8-39 (208)
94 PRK13735 conjugal transfer mat 30.7 1.6E+02 0.0035 32.4 7.3 38 160-197 347-384 (942)
95 COG4035 Predicted membrane pro 30.6 99 0.0021 24.6 4.3 23 217-239 41-63 (108)
96 PRK09928 choline transport pro 30.1 1.3E+02 0.0028 31.8 6.4 34 120-153 33-66 (679)
97 KOG1943 Beta-tubulin folding c 29.7 2.2E+02 0.0048 31.7 8.1 69 135-205 387-462 (1133)
98 PF10797 YhfT: Protein of unkn 29.6 95 0.0021 30.7 4.9 35 93-128 220-254 (420)
99 PF13807 GNVR: G-rich domain o 29.5 82 0.0018 23.4 3.7 25 162-186 55-79 (82)
100 PF11337 DUF3139: Protein of u 29.2 1.6E+02 0.0035 22.1 5.3 17 129-145 34-50 (85)
101 PRK10599 calcium/sodium:proton 28.8 5.6E+02 0.012 25.0 11.6 12 133-144 243-254 (366)
102 PLN02638 cellulose synthase A 28.6 93 0.002 34.5 5.1 7 191-197 394-400 (1079)
103 COG1177 PotC ABC-type spermidi 27.7 3.6E+02 0.0078 25.0 8.3 87 171-257 65-163 (267)
104 PF03773 DUF318: Predicted per 27.3 5.1E+02 0.011 24.1 13.8 17 133-149 212-228 (307)
105 PF03596 Cad: Cadmium resistan 27.2 3E+02 0.0065 24.3 7.3 19 133-151 153-172 (191)
106 KOG1397 Ca2+/H+ antiporter VCX 27.1 2E+02 0.0044 28.6 6.7 6 79-84 274-279 (441)
107 PF15420 Abhydrolase_9_N: Alph 27.0 4.5E+02 0.0099 23.4 9.2 17 185-201 134-150 (208)
108 COG3366 Uncharacterized protei 26.8 5.7E+02 0.012 24.5 10.8 18 160-177 215-232 (311)
109 PRK11463 fxsA phage T7 F exclu 26.8 3.9E+02 0.0084 22.5 10.4 38 166-203 17-54 (148)
110 PRK10527 hypothetical protein; 26.5 2.3E+02 0.0051 23.3 6.1 27 150-176 13-40 (125)
111 PF06809 NPDC1: Neural prolife 26.2 44 0.00095 32.1 2.0 12 47-58 268-279 (341)
112 PF09819 ABC_cobalt: ABC-type 25.7 3.8E+02 0.0083 22.1 9.2 28 174-201 77-106 (129)
113 COG1292 BetT Choline-glycine b 25.6 3.1E+02 0.0067 28.3 7.9 38 117-154 25-62 (537)
114 PF07290 DUF1449: Protein of u 25.3 4.1E+02 0.0088 23.7 7.9 47 181-228 94-141 (202)
115 PF04186 FxsA: FxsA cytoplasmi 25.2 3.7E+02 0.008 21.7 9.3 37 166-202 13-49 (119)
116 PF05072 Herpes_UL43: Herpesvi 24.5 5.6E+02 0.012 25.1 9.2 10 59-68 199-208 (373)
117 PF10031 DUF2273: Small integr 24.5 2.5E+02 0.0054 19.5 5.3 24 174-202 26-49 (51)
118 TIGR00930 2a30 K-Cl cotranspor 24.4 42 0.0009 36.7 1.7 114 68-206 41-157 (953)
119 PF12072 DUF3552: Domain of un 24.2 1.4E+02 0.003 26.3 4.7 26 182-207 4-29 (201)
120 PF15383 TMEM237: Transmembran 24.0 3.5E+02 0.0075 25.0 7.4 45 105-149 96-141 (253)
121 PF01773 Nucleos_tra2_N: Na+ d 23.9 3.1E+02 0.0067 20.4 6.9 37 96-132 16-52 (75)
122 PHA02975 hypothetical protein; 23.9 70 0.0015 23.9 2.2 16 99-114 42-57 (69)
123 PF12811 BaxI_1: Bax inhibitor 23.7 6.1E+02 0.013 23.8 12.2 24 180-203 145-168 (274)
124 COG5129 MAK16 Nuclear protein 23.7 38 0.00083 31.0 1.0 11 66-76 233-243 (303)
125 PF10399 UCR_Fe-S_N: Ubiquitin 23.5 1.3E+02 0.0029 20.0 3.4 19 101-119 12-30 (41)
126 COG1300 SpoIIM Uncharacterized 23.4 2.6E+02 0.0055 25.0 6.2 24 158-181 92-115 (207)
127 COG5346 Predicted membrane pro 23.3 1.7E+02 0.0036 24.5 4.6 26 176-201 104-130 (136)
128 COG3030 FxsA Protein affecting 23.3 3.3E+02 0.0071 23.5 6.6 38 166-207 18-55 (158)
129 PF04186 FxsA: FxsA cytoplasmi 23.2 3E+02 0.0066 22.2 6.2 46 165-210 8-53 (119)
130 PF07857 DUF1632: CEO family ( 22.9 1.3E+02 0.0029 27.7 4.5 8 174-181 223-230 (254)
131 KOG1109 Vacuole membrane prote 22.9 31 0.00067 34.0 0.3 86 185-270 216-320 (440)
132 COG4064 MtrG Tetrahydromethano 22.7 1.6E+02 0.0034 22.2 3.9 23 171-193 50-72 (75)
133 KOG0485 Transcription factor N 22.6 6.1E+02 0.013 23.3 8.5 26 28-53 11-44 (268)
134 COG3493 CitS Na+/citrate sympo 22.1 7.8E+02 0.017 24.6 9.6 25 184-208 357-382 (438)
135 PRK09430 djlA Dna-J like membr 22.0 1.4E+02 0.003 27.6 4.4 17 187-203 17-33 (267)
136 PRK13855 type IV secretion sys 21.9 1.2E+02 0.0025 29.8 4.0 17 99-115 28-44 (376)
137 PF03613 EIID-AGA: PTS system 21.9 2.9E+02 0.0063 25.6 6.5 51 174-226 132-182 (264)
138 PRK08455 fliL flagellar basal 21.7 69 0.0015 28.0 2.2 12 217-228 159-170 (182)
139 PRK11463 fxsA phage T7 F exclu 21.7 3.1E+02 0.0067 23.1 6.1 46 165-210 12-57 (148)
140 PRK03072 heat shock protein Ht 21.6 3.2E+02 0.0068 25.4 6.8 33 169-202 22-54 (288)
141 PF14158 YndJ: YndJ-like prote 21.6 6.7E+02 0.015 23.4 10.6 21 160-180 165-185 (265)
142 PF09451 ATG27: Autophagy-rela 21.4 1.6E+02 0.0035 27.0 4.7 15 103-117 204-218 (268)
143 PF03672 UPF0154: Uncharacteri 21.4 2.8E+02 0.0061 20.4 5.0 16 105-120 3-18 (64)
144 COG4956 Integral membrane prot 21.2 4.5E+02 0.0097 25.5 7.6 63 166-235 8-84 (356)
145 COG0575 CdsA CDP-diglyceride s 21.1 53 0.0011 30.1 1.4 34 182-215 137-170 (265)
146 PF06524 NOA36: NOA36 protein; 21.0 66 0.0014 30.2 2.0 16 8-23 181-196 (314)
147 PF04156 IncA: IncA protein; 20.9 2.1E+02 0.0046 24.3 5.1 19 172-190 34-52 (191)
148 TIGR02762 TraL_TIGR type IV co 20.9 3.1E+02 0.0067 21.3 5.6 33 161-195 17-50 (95)
149 KOG3088 Secretory carrier memb 20.9 7.4E+02 0.016 23.7 9.2 7 80-86 117-123 (313)
150 PF12729 4HB_MCP_1: Four helix 20.8 3.5E+02 0.0076 21.3 6.2 31 102-132 7-37 (181)
151 PRK03001 M48 family peptidase; 20.8 3.2E+02 0.007 25.1 6.6 34 169-202 18-51 (283)
152 PF01102 Glycophorin_A: Glycop 20.8 1.3E+02 0.0028 24.9 3.5 10 193-202 83-92 (122)
153 PF09771 Tmemb_18A: Transmembr 20.8 2.4E+02 0.0051 23.5 5.0 13 134-146 58-70 (125)
154 COG2271 UhpC Sugar phosphate p 20.8 8.8E+02 0.019 24.5 10.1 12 122-133 265-276 (448)
155 PRK10520 rhtB homoserine/homos 20.7 5E+02 0.011 22.3 7.5 22 156-177 15-36 (205)
156 PF12732 YtxH: YtxH-like prote 20.4 2.2E+02 0.0048 20.7 4.4 22 185-206 6-27 (74)
157 PF03806 ABG_transport: AbgT p 20.0 1.1E+02 0.0024 31.1 3.6 21 94-114 251-271 (502)
No 1
>COG0398 Uncharacterized conserved protein [Function unknown]
Probab=99.96 E-value=5.7e-28 Score=216.61 Aligned_cols=150 Identities=34% Similarity=0.587 Sum_probs=136.4
Q ss_pred HHhHHHHHHHHHHHHHHHHhhccHHHHH-HHHHHHhhhcccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024013 122 YVYKDQINAFLTQFSGFIEGYGPAGYAL-FVAVYAGLEILAIPAIPLTMSAGLLFGSVTGTIIVSISGTVAASVAFLIAR 200 (274)
Q Consensus 122 ~~~~~~L~~~l~~l~~~i~~~g~~g~li-fvll~i~~~~l~iP~~~L~iaaG~lFG~~~G~l~~~lG~~lGa~i~F~IgR 200 (274)
+..........+++++|++++|.+++++ |++.++...+.++|++++++++|++||+++|++++++|+++|++++|+++|
T Consensus 25 ~~~~~~~~~~~~~l~~~i~~~g~~~pl~~fil~~l~~~~~~iP~~il~l~~g~ifG~~~G~~~s~~G~~~gs~~~Fll~R 104 (223)
T COG0398 25 YLGLLVLLLDPETLREWIQAYGALGPLVFFILLYLVATLPIIPGSILTLAGGLLFGPFLGFLYSLIGATAGSTLAFLLAR 104 (223)
T ss_pred HHHHHHhccCHHHHHHHHHHcCchHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333445555688999999999999999 666667777778999999999999999999999999999999999999999
Q ss_pred HHhHHHHHHHhcCcHHHHHHHHHHhhcchHhhhHHhhccccchhhhhHhhhccCCChhhHHHHHhhh-cccc
Q 024013 201 YFARERILKLVEGNKKFLAIDKAIGENGFRVVTLLRLSPLLPFSLGNYLYGLTSVKFVPYVLGRYDY-YPSY 271 (274)
Q Consensus 201 ~lGr~~v~~~l~~~~kl~ri~~~l~r~G~~~V~llRliPviP~~vvny~aGls~i~~~~Fll~tllG-iP~~ 271 (274)
++||+++++..++++++++++++++|+|++.++++|++|++|++++||+||+++|++++|++++++| +|++
T Consensus 105 ~~gr~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~lrl~P~~P~~lvn~aaglt~is~~~f~ias~lG~~P~~ 176 (223)
T COG0398 105 YLGRDWVLKFVGGKEKVQRIDAGLERNGFWAILLLRLIPIFPFDLVNYAAGLTGISFRDFAIATLLGKLPGT 176 (223)
T ss_pred HHhHHHHHHHhcccHHHHHHHHHHHhCChHHHHHHHHhhcCCHHHHHHHHhccCCcHHHHHHHHHHhcccHH
Confidence 9999999999888789999999999999999999999999999999999999999999999999999 4654
No 2
>PF09335 SNARE_assoc: SNARE associated Golgi protein; InterPro: IPR015414 This is a entry contains SNARE associated Golgi proteins. The yeast member of this family (P36164 from SWISSPROT) localises with the t-SNARE Tlg2 [].
Probab=99.82 E-value=1.4e-19 Score=145.27 Aligned_cols=107 Identities=33% Similarity=0.578 Sum_probs=97.6
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcCcHHHHH---HHHHHhhcchHhhhHHhhc
Q 024013 162 IPAIPLTMSAGLLFGSVTGTIIVSISGTVAASVAFLIARYFARERILKLVEGNKKFLA---IDKAIGENGFRVVTLLRLS 238 (274)
Q Consensus 162 iP~~~L~iaaG~lFG~~~G~l~~~lG~~lGa~i~F~IgR~lGr~~v~~~l~~~~kl~r---i~~~l~r~G~~~V~llRli 238 (274)
+|++++++++|+++|++.|++++++|+++|+.+.|++||+++++..+++..++++.++ .++.++|+|++.+++.|++
T Consensus 1 iP~~~~~~~~g~~~g~~~~~~~~~~g~~~g~~~~y~lgr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~~~~~ 80 (123)
T PF09335_consen 1 IPGSILLIAAGALFGPWLGFLIATLGAVLGSLLAYLLGRYFGRRRLRRKLRKKKRIKRIERIERWFQKYGFWVLFLSRFI 80 (123)
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 6999999999999999999999999999999999999999997666665554455555 8899999999999999999
Q ss_pred cccchhhhhHhhhccCCChhhHHHHHhhhc
Q 024013 239 PLLPFSLGNYLYGLTSVKFVPYVLGRYDYY 268 (274)
Q Consensus 239 PviP~~vvny~aGls~i~~~~Fll~tllGi 268 (274)
|++|++++|+++|+++||+++|++++++|.
T Consensus 81 P~~P~~~~~~~ag~~~~~~~~f~~~~~~g~ 110 (123)
T PF09335_consen 81 PGLPFDVVNYLAGITRMPFRRFFLASLIGK 110 (123)
T ss_pred HHccHHHHHHHHHccCCCHHHHHHHHHHHH
Confidence 999999999999999999999999999973
No 3
>PRK10847 hypothetical protein; Provisional
Probab=99.73 E-value=4.8e-17 Score=145.40 Aligned_cols=133 Identities=17% Similarity=0.278 Sum_probs=109.0
Q ss_pred HHHHHHHhhccHHHH-HHHHHHHhh---hcccCChHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024013 134 QFSGFIEGYGPAGYA-LFVAVYAGL---EILAIPAIPLTMSAGLLFG-------SVTGTIIVSISGTVAASVAFLIARYF 202 (274)
Q Consensus 134 ~l~~~i~~~g~~g~l-ifvll~i~~---~~l~iP~~~L~iaaG~lFG-------~~~G~l~~~lG~~lGa~i~F~IgR~l 202 (274)
.+.++++++|+|++. +|++++... ...++|++.+.+++|++.+ ++..++++++|+++|+.++|++||++
T Consensus 17 ~~~~~~~~~g~~~y~~lfl~~~le~~~~~~~~lPge~~l~~~G~la~~~~~~~~~~~~~~~a~~Ga~lG~~i~Y~lGr~~ 96 (219)
T PRK10847 17 HLAELVAQYGVWVYAILFLILFCETGLVVTPFLPGDSLLFVAGALASLPTNDLNVHMMVALMLIAAIVGDAVNYTIGRLF 96 (219)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHhccccCCCCCchHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456678888988865 455445432 2356899999999998854 45678888999999999999999999
Q ss_pred hHHHHHHH---hcCcHHHHHHHHHHhhcchHhhhHHhhccccchhhhhHhhhccCCChhhHHHHHhhh
Q 024013 203 ARERILKL---VEGNKKFLAIDKAIGENGFRVVTLLRLSPLLPFSLGNYLYGLTSVKFVPYVLGRYDY 267 (274)
Q Consensus 203 Gr~~v~~~---l~~~~kl~ri~~~l~r~G~~~V~llRliPviP~~vvny~aGls~i~~~~Fll~tllG 267 (274)
|++.+++. ..+++++++.+++++|||.+.+++.|++|+++ ++++++||+++||+++|++.+++|
T Consensus 97 G~~~l~~~~~~~~~~~~l~~~~~~~~r~G~~~v~i~RfiP~~R-~~~~~~aG~~~m~~~~F~~~~~lg 163 (219)
T PRK10847 97 GEKLFSNPNSKIFRRSYLDKTHQFYEKHGGKTIILARFVPIVR-TFAPFVAGMGHMSYRHFAAYNVIG 163 (219)
T ss_pred CHHHhhccccccCCHHHHHHHHHHHHHcCCEEEEeeCCccchH-hHHHHHhHhcCCChHHHHHHHHHH
Confidence 99877532 12346789999999999999999999999765 789999999999999999999987
No 4
>COG0586 DedA Uncharacterized membrane-associated protein [Function unknown]
Probab=99.73 E-value=6.8e-17 Score=143.46 Aligned_cols=109 Identities=18% Similarity=0.229 Sum_probs=99.7
Q ss_pred hcccCChHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhc----CcHHHHHHHHHHhhcc
Q 024013 158 EILAIPAIPLTMSAGLL-----FGSVTGTIIVSISGTVAASVAFLIARYFARERILKLVE----GNKKFLAIDKAIGENG 228 (274)
Q Consensus 158 ~~l~iP~~~L~iaaG~l-----FG~~~G~l~~~lG~~lGa~i~F~IgR~lGr~~v~~~l~----~~~kl~ri~~~l~r~G 228 (274)
...++|++++++++|++ ++++..++.+++|+++|+.+.|++||++|++.+++..+ ++++++|.+++++|||
T Consensus 32 ~~~~lPge~iL~~~G~l~~~g~~~~~~~i~~~~lga~lGd~i~Y~iGr~~G~~~l~~~~~~~~~~~~~l~~a~~~f~r~G 111 (208)
T COG0586 32 VGPPLPGEVLLLLAGALAAQGKLNLWLVILVATLGALLGDLISYWIGRRFGRKLLRKLWSYRLLKRKKLDKAELLFERHG 111 (208)
T ss_pred cCCCCCchHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHhhhhhccCCHHHHHHHHHHHHHcC
Confidence 45789999999999998 45778888999999999999999999999998887766 5688999999999999
Q ss_pred hHhhhHHhhccccchhhhhHhhhccCCChhhHHHHHhhh
Q 024013 229 FRVVTLLRLSPLLPFSLGNYLYGLTSVKFVPYVLGRYDY 267 (274)
Q Consensus 229 ~~~V~llRliPviP~~vvny~aGls~i~~~~Fll~tllG 267 (274)
.++++++|++|++ .+++.++||+++||+++|.+.+++|
T Consensus 112 ~~~vf~~RFip~v-Rt~ip~~AG~~~m~~~~F~~~n~~g 149 (208)
T COG0586 112 LFAIFLGRFIPGV-RTLVPIVAGMSKMPLRRFLLYNILG 149 (208)
T ss_pred chhhhhhcccchh-HhhhhHhhhhccCChHHHHHHHHHH
Confidence 9999999999974 7999999999999999999999887
No 5
>COG1238 Predicted membrane protein [Function unknown]
Probab=99.41 E-value=4.1e-12 Score=108.91 Aligned_cols=131 Identities=17% Similarity=0.312 Sum_probs=106.6
Q ss_pred HHHHhhccHHHHHHHHHHHhhhcccCChHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhc-Cc
Q 024013 137 GFIEGYGPAGYALFVAVYAGLEILAIPAIPLTMSAGLL-FGSVTGTIIVSISGTVAASVAFLIARYFARERILKLVE-GN 214 (274)
Q Consensus 137 ~~i~~~g~~g~lifvll~i~~~~l~iP~~~L~iaaG~l-FG~~~G~l~~~lG~~lGa~i~F~IgR~lGr~~v~~~l~-~~ 214 (274)
...+.+++++ +|+..++..+++|+|.+++.+..-.. +.++.-.+++++|+++|++++|++||+.++...++... ++
T Consensus 12 ~~~~~~a~~~--Lf~vaF~eat~lP~~sE~~l~~m~~~~~~~~~~~~vAt~gs~lG~~~~y~lG~~~~~~~~~~~~~~~~ 89 (161)
T COG1238 12 LMSQAYAYAG--LFIVAFLEATLLPVPSEVLLAPMLLLGLNAWILALVATLGSVLGGLVNYALGRFLPEFIARRWFPGSE 89 (161)
T ss_pred HHHHHHHHHH--HHHHHHHHHHhcCCChHHHHHHHHHcCCchHHHHHHHHHHhhHhHHHHHHHHhcchHHHHHHhhcchH
Confidence 3444556665 57777888889999988765555444 77888889999999999999999999998876665442 35
Q ss_pred HHHHHHHH-HHhhcchHhhhHHhhccccchhhhhHhhhccCCChhhHHHHHhhhc-ccc
Q 024013 215 KKFLAIDK-AIGENGFRVVTLLRLSPLLPFSLGNYLYGLTSVKFVPYVLGRYDYY-PSY 271 (274)
Q Consensus 215 ~kl~ri~~-~l~r~G~~~V~llRliPviP~~vvny~aGls~i~~~~Fll~tllGi-P~~ 271 (274)
++.++.++ +.+|+|.+.+++.-+.| +| ++++.+||..++++..|++..++|. .+|
T Consensus 90 ~~~~~~~~~~~~ryg~~~ll~s~lp~-ig-d~~t~~aG~~~~~~~~f~~~~~igk~~Ry 146 (161)
T COG1238 90 EALEKLQEKWYRRYGVWTLLLSWLPP-IG-DVLTLLAGWLRLNFLPFILLVFLGKAARY 146 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccc-cc-hHHHHHHHHHHccHHHHHHHHHHHHHHHH
Confidence 67778776 88999999999999988 68 9999999999999999999999984 444
No 6
>KOG3140 consensus Predicted membrane protein [Function unknown]
Probab=99.39 E-value=1.1e-12 Score=121.11 Aligned_cols=134 Identities=29% Similarity=0.490 Sum_probs=116.4
Q ss_pred HHHHHHHHhhccHHHHHHHHHHHhhhcccCCh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHh
Q 024013 133 TQFSGFIEGYGPAGYALFVAVYAGLEILAIPA-IPLTMSAGLLFGSVTGTIIVSISGTVAASVAFLIARYFARERILKLV 211 (274)
Q Consensus 133 ~~l~~~i~~~g~~g~lifvll~i~~~~l~iP~-~~L~iaaG~lFG~~~G~l~~~lG~~lGa~i~F~IgR~lGr~~v~~~l 211 (274)
+-+..+.+++.....+.|++.|+.....++|+ ..+.+.+|++||.|.|++++...+++|++++|.+++..||+.+.+++
T Consensus 83 ~vl~~y~~~~~a~~~~~~~~~y~f~qtfaipG~~fls~~aG~l~~~~~g~~Lv~~~~~~ga~~cy~lS~~f~r~~v~~l~ 162 (275)
T KOG3140|consen 83 AVLRKYKATYFAAVLLGFIAAYVFLQTFAIPGSIFLSLLAGALFGVFKGVLLVCLLSTLGASLCYLLSKLFGRPLVLKLF 162 (275)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHhhccceEEeeeeeccchhHHHHHHHHHHHhHHHHHHHh
Confidence 45556677776677778898999888899995 68999999999999999999999999999999999999999999998
Q ss_pred cCcHHHHHHHHHH--hhcc-hHhhhHHhhccccchhhhhHhhhccCCChhhHHHHHhhhc
Q 024013 212 EGNKKFLAIDKAI--GENG-FRVVTLLRLSPLLPFSLGNYLYGLTSVKFVPYVLGRYDYY 268 (274)
Q Consensus 212 ~~~~kl~ri~~~l--~r~G-~~~V~llRliPviP~~vvny~aGls~i~~~~Fll~tllGi 268 (274)
. ++.+.++..+ ++++ +.++++.|+.|..|+++.|+++++.+++++.|++++++|+
T Consensus 163 p--~~~~~~~~~~~~~~~~~~~~~~~lrlsp~~pnw~~n~~spvl~Vp~~~f~~~~~~gl 220 (275)
T KOG3140|consen 163 P--DKIAFLQQDVELNRNSLLNYMLFLRLSPFLPNWVINIVSPVLGVPLRIFFIGTFKGL 220 (275)
T ss_pred H--HHHHHHHHHHHhcccchhhhhhhhhhccCCHHHHHHHHHHhhccchHHHHHHHHHhc
Confidence 8 4555554444 3556 5679999999999999999999999999999999999985
No 7
>PF06695 Sm_multidrug_ex: Putative small multi-drug export protein; InterPro: IPR009577 This family contains a small number of putative small multi-drug export proteins.
Probab=96.23 E-value=0.055 Score=44.34 Aligned_cols=93 Identities=17% Similarity=0.152 Sum_probs=66.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH-----HHHHHhcC-cHHHHHHHHHHhhcchHhhhHHhhccccc---hhh
Q 024013 175 FGSVTGTIIVSISGTVAASVAFLIARYFARE-----RILKLVEG-NKKFLAIDKAIGENGFRVVTLLRLSPLLP---FSL 245 (274)
Q Consensus 175 FG~~~G~l~~~lG~~lGa~i~F~IgR~lGr~-----~v~~~l~~-~~kl~ri~~~l~r~G~~~V~llRliPviP---~~v 245 (274)
++++..++++.+|+++.....++.-++.-+- ..++..++ .++.++-++.++|+|++.+++.-.+| +| .+.
T Consensus 14 l~p~~~~~~~~lGN~l~vp~i~~~~~~i~~~l~~~~~~~~~~~~~~~k~~~~~~~i~kyg~~GL~lFVaIP-lP~TG~wt 92 (121)
T PF06695_consen 14 LPPWEAFLLAFLGNILPVPFILLFLDKILKWLKRKPWLKKFYEWLEKKAEKKSKKIEKYGFWGLALFVAIP-LPGTGAWT 92 (121)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhCC-CCcchHHH
Confidence 4577888888888888776666666554321 12222211 13555677888999999888877777 46 456
Q ss_pred hhHhhhccCCChhhHHHHHhhhc
Q 024013 246 GNYLYGLTSVKFVPYVLGRYDYY 268 (274)
Q Consensus 246 vny~aGls~i~~~~Fll~tllGi 268 (274)
-+++|-+.+|+.++=+++..+|.
T Consensus 93 gal~a~llg~~~~~~~~ai~~Gv 115 (121)
T PF06695_consen 93 GALIASLLGMDKKKAFLAIFLGV 115 (121)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHH
Confidence 78899999999999999988884
No 8
>PLN02953 phosphatidate cytidylyltransferase
Probab=92.77 E-value=2 Score=42.09 Aligned_cols=30 Identities=13% Similarity=0.168 Sum_probs=18.0
Q ss_pred CCCCCCcCchhHHHHHHHHHHHHHHHHHHH
Q 024013 89 AESEGLEGDTAVKGSILAGVLLLVVVGGFG 118 (274)
Q Consensus 89 ~~~~~~~~~~~~~~~ll~~v~lv~~v~~l~ 118 (274)
+.++.+++.+..+++++..+++++++.+..
T Consensus 87 ~~~~~~~~~~~l~~RIiSglvl~~l~l~vV 116 (403)
T PLN02953 87 NVEDKQKKASQLKKRVIFGIGIGLPVGCVV 116 (403)
T ss_pred cccccccccccHHHHHHHHHHHHHHHHhee
Confidence 334455666677777777766665554443
No 9
>PF06695 Sm_multidrug_ex: Putative small multi-drug export protein; InterPro: IPR009577 This family contains a small number of putative small multi-drug export proteins.
Probab=89.55 E-value=2.3 Score=34.77 Aligned_cols=53 Identities=26% Similarity=0.305 Sum_probs=35.7
Q ss_pred HHHHHHHhhccHHHHHHHHHHHhhhcccCChH--HHHHHHHHHHH--HHHHHHHHHHHHHHHHH
Q 024013 134 QFSGFIEGYGPAGYALFVAVYAGLEILAIPAI--PLTMSAGLLFG--SVTGTIIVSISGTVAAS 193 (274)
Q Consensus 134 ~l~~~i~~~g~~g~lifvll~i~~~~l~iP~~--~L~iaaG~lFG--~~~G~l~~~lG~~lGa~ 193 (274)
.-+++++.+|.+|..+|+ .+|+|++ ..-.+++.++| ....++...+|..+++.
T Consensus 64 ~~~~~i~kyg~~GL~lFV-------aIPlP~TG~wtgal~a~llg~~~~~~~~ai~~Gv~ia~~ 120 (121)
T PF06695_consen 64 KKSKKIEKYGFWGLALFV-------AIPLPGTGAWTGALIASLLGMDKKKAFLAIFLGVLIAGV 120 (121)
T ss_pred HHHHHHHHHhHHHHHHHH-------hCCCCcchHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHh
Confidence 355677888988877776 5688853 55566666766 35566666777766654
No 10
>COG0398 Uncharacterized conserved protein [Function unknown]
Probab=86.08 E-value=24 Score=31.85 Aligned_cols=81 Identities=15% Similarity=0.172 Sum_probs=54.1
Q ss_pred HHhHHHHHHHHHHHHHHHHhhccHH-HHHHHHHHHhhhcccCCh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024013 122 YVYKDQINAFLTQFSGFIEGYGPAG-YALFVAVYAGLEILAIPA-IPLTMSAGLLFGSVTGTIIVSISGTVAASVAFLIA 199 (274)
Q Consensus 122 ~~~~~~L~~~l~~l~~~i~~~g~~g-~lifvll~i~~~~l~iP~-~~L~iaaG~lFG~~~G~l~~~lG~~lGa~i~F~Ig 199 (274)
..+.+.+.+|.++.-.| ++.. .++..+...+......+. ..--.+-|...|.+...+-+++|+++.-.++=..+
T Consensus 32 ~~~~~~l~~~i~~~g~~----~pl~~fil~~l~~~~~~iP~~il~l~~g~ifG~~~G~~~s~~G~~~gs~~~Fll~R~~g 107 (223)
T COG0398 32 LLDPETLREWIQAYGAL----GPLVFFILLYLVATLPIIPGSILTLAGGLLFGPFLGFLYSLIGATAGSTLAFLLARYLG 107 (223)
T ss_pred ccCHHHHHHHHHHcCch----HHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44455566555543333 3333 666666666555666563 34556678899999999888999999999998888
Q ss_pred HHHhHHH
Q 024013 200 RYFARER 206 (274)
Q Consensus 200 R~lGr~~ 206 (274)
|..-++.
T Consensus 108 r~~~~~~ 114 (223)
T COG0398 108 RDWVLKF 114 (223)
T ss_pred HHHHHHH
Confidence 8665443
No 11
>PRK13109 flhB flagellar biosynthesis protein FlhB; Reviewed
Probab=85.90 E-value=4.5 Score=39.18 Aligned_cols=12 Identities=8% Similarity=-0.155 Sum_probs=4.6
Q ss_pred HHHHHHHHHHHH
Q 024013 102 GSILAGVLLLVV 113 (274)
Q Consensus 102 ~~ll~~v~lv~~ 113 (274)
+=+-..+.+++.
T Consensus 32 ~el~~~~~l~~~ 43 (358)
T PRK13109 32 REAPVFASMLGL 43 (358)
T ss_pred HhHHHHHHHHHH
Confidence 333333333333
No 12
>PRK01844 hypothetical protein; Provisional
Probab=83.30 E-value=3.5 Score=30.97 Aligned_cols=34 Identities=18% Similarity=0.266 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 024013 177 SVTGTIIVSISGTVAASVAFLIARYFARERILKL 210 (274)
Q Consensus 177 ~~~G~l~~~lG~~lGa~i~F~IgR~lGr~~v~~~ 210 (274)
.|..+++..++..+|.+++|+++|+..++.+++-
T Consensus 3 ~~~~I~l~I~~li~G~~~Gff~ark~~~k~lk~N 36 (72)
T PRK01844 3 IWLGILVGVVALVAGVALGFFIARKYMMNYLQKN 36 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 3455666678888999999999999876655543
No 13
>PF08006 DUF1700: Protein of unknown function (DUF1700); InterPro: IPR012963 This family contains many hypothetical bacterial proteins and two putative membrane proteins (Q6GFD0 from SWISSPROT and Q6G806 from SWISSPROT).
Probab=79.64 E-value=25 Score=30.09 Aligned_cols=26 Identities=12% Similarity=0.333 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 024013 178 VTGTIIVSISGTVAASVAFLIARYFAR 204 (274)
Q Consensus 178 ~~G~l~~~lG~~lGa~i~F~IgR~lGr 204 (274)
+.|..+..+|..+ ..+.+++.+++.+
T Consensus 141 ~~~i~~~glGlll-~~~~~~l~k~~~~ 166 (181)
T PF08006_consen 141 FFGIGLFGLGLLL-IVITFYLTKLFIK 166 (181)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence 3444444444333 3345666666654
No 14
>PRK11677 hypothetical protein; Provisional
Probab=77.88 E-value=6 Score=33.16 Aligned_cols=24 Identities=17% Similarity=0.044 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhH
Q 024013 181 TIIVSISGTVAASVAFLIARYFAR 204 (274)
Q Consensus 181 ~l~~~lG~~lGa~i~F~IgR~lGr 204 (274)
+++..+|.++|.+++|+++|+..+
T Consensus 3 W~~a~i~livG~iiG~~~~R~~~~ 26 (134)
T PRK11677 3 WEYALIGLVVGIIIGAVAMRFGNR 26 (134)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccc
Confidence 456678888999999999997653
No 15
>PRK00523 hypothetical protein; Provisional
Probab=76.29 E-value=8.1 Score=29.07 Aligned_cols=29 Identities=7% Similarity=0.094 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 024013 181 TIIVSISGTVAASVAFLIARYFARERILK 209 (274)
Q Consensus 181 ~l~~~lG~~lGa~i~F~IgR~lGr~~v~~ 209 (274)
+++..++..+|.+++|+++|+..++.+++
T Consensus 8 I~l~i~~li~G~~~Gffiark~~~k~l~~ 36 (72)
T PRK00523 8 LGLGIPLLIVGGIIGYFVSKKMFKKQIRE 36 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456677889999999999987665553
No 16
>PRK05702 flhB flagellar biosynthesis protein FlhB; Reviewed
Probab=76.27 E-value=16 Score=35.47 Aligned_cols=15 Identities=13% Similarity=0.031 Sum_probs=5.9
Q ss_pred hHHHHHHHHHHHHHH
Q 024013 99 AVKGSILAGVLLLVV 113 (274)
Q Consensus 99 ~~~~~ll~~v~lv~~ 113 (274)
+..+=+-..+.+++.
T Consensus 28 ~kS~el~~a~~ll~~ 42 (359)
T PRK05702 28 PRSRELNTAASLLAG 42 (359)
T ss_pred CchHHHHHHHHHHHH
Confidence 333444443333333
No 17
>COG1377 FlhB Flagellar biosynthesis pathway, component FlhB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=75.65 E-value=12 Score=36.34 Aligned_cols=14 Identities=29% Similarity=0.581 Sum_probs=6.2
Q ss_pred cCChHHHHHHHHHH
Q 024013 161 AIPAIPLTMSAGLL 174 (274)
Q Consensus 161 ~iP~~~L~iaaG~l 174 (274)
.+|..+..+++|.+
T Consensus 93 llp~~~~~~v~gi~ 106 (363)
T COG1377 93 LLPFLLVLLVVGLL 106 (363)
T ss_pred HHHHHHHHHHHHHH
Confidence 35544444444433
No 18
>PF07155 ECF-ribofla_trS: ECF-type riboflavin transporter, S component; InterPro: IPR009825 This family consists of several bacterial proteins of around 180 residues in length that appear to be multi-pass membrane proteins. The function of this family is unknown.; GO: 0016020 membrane
Probab=75.43 E-value=9.2 Score=32.19 Aligned_cols=32 Identities=28% Similarity=0.415 Sum_probs=27.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024013 164 AIPLTMSAGLLFGSVTGTIIVSISGTVAASVA 195 (274)
Q Consensus 164 ~~~L~iaaG~lFG~~~G~l~~~lG~~lGa~i~ 195 (274)
+....+.+|.+||+..|.+...+|..+++.+.
T Consensus 38 ~~~~i~l~~~l~Gp~~G~ivg~ig~~l~dll~ 69 (169)
T PF07155_consen 38 GSIPIILAGLLFGPKYGAIVGAIGDLLSDLLS 69 (169)
T ss_pred hhHHHHHHHHHHChHHHHHHHHHHHHHHHHhC
Confidence 46788999999999999999999988887744
No 19
>PF05915 DUF872: Eukaryotic protein of unknown function (DUF872); InterPro: IPR008590 This entry represents several uncharacterised eukaryotic transmembrane proteins. The function of this currently unknown.
Probab=70.72 E-value=8.5 Score=31.37 Aligned_cols=8 Identities=25% Similarity=0.376 Sum_probs=5.0
Q ss_pred cccCChHH
Q 024013 159 ILAIPAIP 166 (274)
Q Consensus 159 ~l~iP~~~ 166 (274)
+.++|+.-
T Consensus 85 L~fIPG~Y 92 (115)
T PF05915_consen 85 LCFIPGFY 92 (115)
T ss_pred HHHhccHH
Confidence 45688753
No 20
>PRK12468 flhB flagellar biosynthesis protein FlhB; Reviewed
Probab=70.41 E-value=25 Score=34.45 Aligned_cols=15 Identities=7% Similarity=-0.015 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHHHH
Q 024013 100 VKGSILAGVLLLVVV 114 (274)
Q Consensus 100 ~~~~ll~~v~lv~~v 114 (274)
..+=+...+.+++.+
T Consensus 29 kS~el~~a~~ll~~~ 43 (386)
T PRK12468 29 RSRELTSMLMLGAGL 43 (386)
T ss_pred chHHHHHHHHHHHHH
Confidence 334444444444433
No 21
>COG2426 Predicted membrane protein [Function unknown]
Probab=70.12 E-value=14 Score=31.03 Aligned_cols=56 Identities=25% Similarity=0.433 Sum_probs=33.5
Q ss_pred HHHHHHHHhhccHHHHHHHHHHHhhhcccCChH--HHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH
Q 024013 133 TQFSGFIEGYGPAGYALFVAVYAGLEILAIPAI--PLTMSAGLLFGSV--TGTIIVSISGTVAASVA 195 (274)
Q Consensus 133 ~~l~~~i~~~g~~g~lifvll~i~~~~l~iP~~--~L~iaaG~lFG~~--~G~l~~~lG~~lGa~i~ 195 (274)
+.-..++|.+|+.|..+|+ .+|+|++ .--..+.+++|.- ..+....+|..++.++.
T Consensus 73 rka~~yVER~G~iGL~iFv-------AIPLP~TG~wtgaLaA~llgI~~r~a~~al~~Gg~is~~vt 132 (142)
T COG2426 73 RKAKGYVERYGFIGLIIFV-------AIPLPGTGAWTGALAAYLLGIRERFAFAALSAGGLISGAVT 132 (142)
T ss_pred HhccCcHhhhhhhhhhhee-------eccCCCccHhHHHHHHHHHcCchHHHHHHHHHhhHHHHHHH
Confidence 4456678888988877665 5788864 3444455666642 23344455555554443
No 22
>PF11139 DUF2910: Protein of unknown function (DUF2910); InterPro: IPR021315 Some members in this bacterial family annotate the proteins as cytochrome C biogenesis proteins however this cannot be confirmed. Currently no function for this family is known.
Probab=68.92 E-value=47 Score=29.19 Aligned_cols=19 Identities=0% Similarity=0.022 Sum_probs=13.7
Q ss_pred HHHHHHHHHHhhcchHhhh
Q 024013 215 KKFLAIDKAIGENGFRVVT 233 (274)
Q Consensus 215 ~kl~ri~~~l~r~G~~~V~ 233 (274)
+.++++++++++|+...+.
T Consensus 180 ~~l~r~~~wl~~~~~~i~~ 198 (214)
T PF11139_consen 180 PWLERLRSWLRRHSRQILA 198 (214)
T ss_pred HHHHHHHHHHHHccHHHHH
Confidence 4567888889888765543
No 23
>COG3763 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=68.58 E-value=15 Score=27.55 Aligned_cols=32 Identities=13% Similarity=0.162 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 024013 177 SVTGTIIVSISGTVAASVAFLIARYFARERIL 208 (274)
Q Consensus 177 ~~~G~l~~~lG~~lGa~i~F~IgR~lGr~~v~ 208 (274)
.|.++++..++..+|.+.+|+++|+.-.+.++
T Consensus 3 l~lail~ivl~ll~G~~~G~fiark~~~k~lk 34 (71)
T COG3763 3 LWLAILLIVLALLAGLIGGFFIARKQMKKQLK 34 (71)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35566666666777888889999987654443
No 24
>PF03672 UPF0154: Uncharacterised protein family (UPF0154); InterPro: IPR005359 The proteins in this entry are functionally uncharacterised.
Probab=68.23 E-value=8.8 Score=28.23 Aligned_cols=26 Identities=23% Similarity=0.469 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHH
Q 024013 184 VSISGTVAASVAFLIARYFARERILK 209 (274)
Q Consensus 184 ~~lG~~lGa~i~F~IgR~lGr~~v~~ 209 (274)
..++..+|++++|+++|+..++-+++
T Consensus 3 iilali~G~~~Gff~ar~~~~k~l~~ 28 (64)
T PF03672_consen 3 IILALIVGAVIGFFIARKYMEKQLKE 28 (64)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667788999999999987765544
No 25
>TIGR02831 spo_II_M stage II sporulation protein M. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This predicted integral membrane protein is designated stage II sporulation protein M.
Probab=68.04 E-value=86 Score=27.63 Aligned_cols=25 Identities=24% Similarity=0.602 Sum_probs=16.9
Q ss_pred cccCChHHH-HHHHHHHHHHHHHHHH
Q 024013 159 ILAIPAIPL-TMSAGLLFGSVTGTII 183 (274)
Q Consensus 159 ~l~iP~~~L-~iaaG~lFG~~~G~l~ 183 (274)
.+.+|...+ .+..|+..|...+.++
T Consensus 87 ~~Gip~i~~~l~~nGf~~Gf~v~~~v 112 (200)
T TIGR02831 87 IIGLPIILILDFLKGFVVGFTVGFLV 112 (200)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456786654 7888888887665543
No 26
>PRK13661 hypothetical protein; Provisional
Probab=64.94 E-value=37 Score=29.80 Aligned_cols=31 Identities=23% Similarity=0.329 Sum_probs=25.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024013 164 AIPLTMSAGLLFGSVTGTIIVSISGTVAASV 194 (274)
Q Consensus 164 ~~~L~iaaG~lFG~~~G~l~~~lG~~lGa~i 194 (274)
+....+..|++||+..|++...+|..++..+
T Consensus 40 ~~~~i~l~a~lfGp~~G~lvg~ig~~L~dll 70 (182)
T PRK13661 40 AYAFLALFAVLFGPVVGFLVGFIGHALKDFI 70 (182)
T ss_pred HHHHHHHHHHHHChHHHHHHHHHHHHHHHHH
Confidence 4577788888999999998888888877665
No 27
>PF08372 PRT_C: Plant phosphoribosyltransferase C-terminal; InterPro: IPR013583 This domain is found at the C terminus of phosphoribosyltransferases and phosphoribosyltransferase-like proteins. It contains putative transmembrane regions. It often appears together with calcium-ion dependent C2 domains (IPR000008 from INTERPRO).
Probab=64.45 E-value=76 Score=27.27 Aligned_cols=7 Identities=29% Similarity=0.282 Sum_probs=3.0
Q ss_pred cCChHHH
Q 024013 161 AIPAIPL 167 (274)
Q Consensus 161 ~iP~~~L 167 (274)
.+|.-++
T Consensus 113 ~vP~r~l 119 (156)
T PF08372_consen 113 FVPFRVL 119 (156)
T ss_pred HhhHHHH
Confidence 4554333
No 28
>PF09335 SNARE_assoc: SNARE associated Golgi protein; InterPro: IPR015414 This is a entry contains SNARE associated Golgi proteins. The yeast member of this family (P36164 from SWISSPROT) localises with the t-SNARE Tlg2 [].
Probab=62.93 E-value=69 Score=24.76 Aligned_cols=60 Identities=15% Similarity=0.101 Sum_probs=34.1
Q ss_pred HHHHHHHhhccHHHHHHHHHHHhhhcccCChHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Q 024013 134 QFSGFIEGYGPAGYALFVAVYAGLEILAIPAIPLTMSAGLL-FGSVTGTIIVSISGTVAASVAFLIA 199 (274)
Q Consensus 134 ~l~~~i~~~g~~g~lifvll~i~~~~l~iP~~~L~iaaG~l-FG~~~G~l~~~lG~~lGa~i~F~Ig 199 (274)
++.+++++++.+.. ++ ...+..+|..++..++|.. ..++.-++.+.+|...-+.+.-++|
T Consensus 61 ~~~~~~~~~g~~~l--~~----~~~~P~~P~~~~~~~ag~~~~~~~~f~~~~~~g~~~~~~~~~~~G 121 (123)
T PF09335_consen 61 RIERWFQKYGFWVL--FL----SRFIPGLPFDVVNYLAGITRMPFRRFFLASLIGKLPWTILYVLLG 121 (123)
T ss_pred HHHHHHhhhhHHHH--HH----HHHHHHccHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 36666766666542 11 1112347888888888865 4455555555566655555444443
No 29
>TIGR00261 traB pheromone shutdown-related protein TraB. traB is a plasmid encoded gene that functions in the shutdown of the peptide sex pheromone cPD1 which is produced by the plasmid free recipient cell prior to conjugative transfer in Enterococcus faecalis. Once the recipient acquires the plasmid, production of cPD1 is shut down. The gene product may play another role in the other species in the family.
Probab=61.34 E-value=1.3e+02 Score=29.50 Aligned_cols=44 Identities=9% Similarity=0.176 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhccHHH
Q 024013 103 SILAGVLLLVVVGGFGTMGYVYKDQINAFLTQFSGFIEGYGPAGY 147 (274)
Q Consensus 103 ~ll~~v~lv~~v~~l~~~~~~~~~~L~~~l~~l~~~i~~~g~~g~ 147 (274)
.++..++.+++++.+++.++.. ...+...+.+..|+--+|..+.
T Consensus 240 k~~~~~i~~~i~~~~~~~~~~~-~~~~~~~~~~~~W~l~ng~laa 283 (380)
T TIGR00261 240 KVLSYLIAISIILLFVMISFYL-NGFEFLYKNLKLWILSNGILSA 283 (380)
T ss_pred HHHHHHHHHHHHHHHHHHHHHc-CcHHHHHHHHHHHHHHHhHHHH
Confidence 4455555555555554332221 2233345666677766666543
No 30
>PF02417 Chromate_transp: Chromate transporter; InterPro: IPR003370 This entry represents chromate transporters (CHR) [, ]. These proteins reduce chromate accumulation and are essential for chromate resistance. They are composed of one or two copies of this region. The short-chain CHR proteins form heterodimer transporters which efflux chromate ions from the cytoplasm, while the long chain CHR proteins appear to have arisen from a gene fusion event of two short chain transporters[].; GO: 0015109 chromate transmembrane transporter activity, 0015703 chromate transport
Probab=61.30 E-value=1e+02 Score=26.14 Aligned_cols=64 Identities=19% Similarity=0.193 Sum_probs=40.9
Q ss_pred HhhccHHHHHHHHHHHhhhcccCChHH-HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHh
Q 024013 140 EGYGPAGYALFVAVYAGLEILAIPAIP-LTMSAGLLFGSVTGTIIVSISGTV-AASVAFLIARYFA 203 (274)
Q Consensus 140 ~~~g~~g~lifvll~i~~~~l~iP~~~-L~iaaG~lFG~~~G~l~~~lG~~l-Ga~i~F~IgR~lG 203 (274)
+++++...-=|.-.+.+...+|=|... +....|+..+-+.|.+++.+|..+ +..+...+++.+.
T Consensus 33 ~~~~wlt~~~f~~~~al~q~~PGP~~~n~a~~iG~~~~G~~Gai~a~~~~~lP~~l~~~~~~~~~~ 98 (169)
T PF02417_consen 33 ERRGWLTEEEFLEGLALAQALPGPIAINLATFIGYRLAGFLGAIVATIGFILPSFLLILLLSPLYS 98 (169)
T ss_pred HccCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444455555555666777655 778888888778888888888775 4444555555543
No 31
>PRK05415 hypothetical protein; Provisional
Probab=61.30 E-value=42 Score=32.42 Aligned_cols=22 Identities=18% Similarity=0.253 Sum_probs=14.2
Q ss_pred HHHHHHhhcchHhhhHHhhccc
Q 024013 219 AIDKAIGENGFRVVTLLRLSPL 240 (274)
Q Consensus 219 ri~~~l~r~G~~~V~llRliPv 240 (274)
+.++.+.++....-++.-+.|.
T Consensus 201 ~A~~~I~~~a~~~a~~vAvsPl 222 (341)
T PRK05415 201 QARRLISRAAAESALVTAVSPL 222 (341)
T ss_pred HHHHHHHHHHHHHHHhheeCcH
Confidence 4555666777666667777773
No 32
>PF13197 DUF4013: Protein of unknown function (DUF4013)
Probab=60.59 E-value=1e+02 Score=25.90 Aligned_cols=15 Identities=27% Similarity=0.698 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHh
Q 024013 110 LLVVVGGFGTMGYVY 124 (274)
Q Consensus 110 lv~~v~~l~~~~~~~ 124 (274)
.+..++.+...+|.+
T Consensus 9 ~i~ii~~~~~~GY~~ 23 (169)
T PF13197_consen 9 IIPIIGLFLLLGYLV 23 (169)
T ss_pred HHHHHHHHHHHHHHH
Confidence 444455555555654
No 33
>TIGR02359 thiW thiW protein. Levels of thiamine pyrophosphate (TPP) or thiamine regulate transcription or translation of a number of thiamine biosynthesis, salvage, or transport genes in a wide range of prokaryotes. The mechanism involves direct binding, with no protein involved,to a structural element called THI found in the untranslated upstream region of thiamine metabolism gene operons. This element is called a riboswitch and is seen also for other metabolites such as FMN and glycine. This protein family consists of proteins identified in operons controlled by the THI riboswitch and designated ThiW. The hydrophobic nature of this protein and reconstructed metabolic background suggests that this protein acts in transport of a thiazole precursor of thiamine.
Probab=60.29 E-value=15 Score=31.61 Aligned_cols=31 Identities=19% Similarity=0.278 Sum_probs=26.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024013 164 AIPLTMSAGLLFGSVTGTIIVSISGTVAASV 194 (274)
Q Consensus 164 ~~~L~iaaG~lFG~~~G~l~~~lG~~lGa~i 194 (274)
+...++.+|++||||+|.+...+++.++.+.
T Consensus 34 ~~i~~vlaavllGP~~g~~~a~i~~ll~~l~ 64 (160)
T TIGR02359 34 QHFVNVIAGVLLGPWYALAVAFIIGLLRNTL 64 (160)
T ss_pred hHHHHHHHHHHHchHHHHHHHHHHHHHHHHh
Confidence 5789999999999999999888888776554
No 34
>PRK12785 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=59.56 E-value=2.6 Score=36.22 Aligned_cols=7 Identities=14% Similarity=0.415 Sum_probs=2.7
Q ss_pred HHHHHHh
Q 024013 219 AIDKAIG 225 (274)
Q Consensus 219 ri~~~l~ 225 (274)
+++..+.
T Consensus 145 ~in~~l~ 151 (166)
T PRK12785 145 RVNVALA 151 (166)
T ss_pred HHHhhcC
Confidence 3433333
No 35
>PF06295 DUF1043: Protein of unknown function (DUF1043); InterPro: IPR009386 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=59.54 E-value=15 Score=30.27 Aligned_cols=22 Identities=27% Similarity=0.344 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhHH
Q 024013 184 VSISGTVAASVAFLIARYFARE 205 (274)
Q Consensus 184 ~~lG~~lGa~i~F~IgR~lGr~ 205 (274)
+++|.++|.+++|+++|...+.
T Consensus 2 ~~i~lvvG~iiG~~~~r~~~~~ 23 (128)
T PF06295_consen 2 AIIGLVVGLIIGFLIGRLTSSN 23 (128)
T ss_pred hHHHHHHHHHHHHHHHHHhccc
Confidence 4677788888888888887543
No 36
>COG5336 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=59.51 E-value=30 Score=28.21 Aligned_cols=16 Identities=25% Similarity=0.414 Sum_probs=10.8
Q ss_pred HhhccHHHHHHHHHHH
Q 024013 140 EGYGPAGYALFVAVYA 155 (274)
Q Consensus 140 ~~~g~~g~lifvll~i 155 (274)
.+..+|++++|.++-.
T Consensus 70 agTsPwglIv~lllGf 85 (116)
T COG5336 70 AGTSPWGLIVFLLLGF 85 (116)
T ss_pred cCCCcHHHHHHHHHHH
Confidence 3568898877765543
No 37
>PF04246 RseC_MucC: Positive regulator of sigma(E), RseC/MucC; InterPro: IPR007359 This bacterial family of integral membrane proteins represents a positive regulator of the sigma(E) transcription factor, namely RseC/MucC. The sigma(E) transcription factor is up-regulated by cell envelope protein misfolding, and regulates the expression of genes that are collectively termed ECF (devoted to Extra-Cellular Functions) []. In Pseudomonas aeruginosa, derepression of sigma(E) is associated with the alginate-overproducing phenotype characteristic of chronic respiratory tract colonization in cystic fibrosis patients. The mechanism by which RseC/MucC positively regulates the sigma(E) transcription factor is unknown. RseC is also thought to have a role in thiamine biosynthesis in Salmonella typhimurium []. In addition, this family also includes an N-terminal part of RnfF, a Rhodobacter capsulatus protein, of unknown function, that is essential for nitrogen fixation. This protein also contains a domain found in ApbE protein IPR003374 from INTERPRO, which is itself involved in thiamine biosynthesis.
Probab=58.37 E-value=31 Score=28.18 Aligned_cols=25 Identities=28% Similarity=0.567 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHH
Q 024013 181 TIIVSISGTVAASVAFLIARYFARE 205 (274)
Q Consensus 181 ~l~~~lG~~lGa~i~F~IgR~lGr~ 205 (274)
-.++.+++.+|-.++|++.|++.+.
T Consensus 96 e~~~~l~~l~~l~~~~~~~~~~~~~ 120 (135)
T PF04246_consen 96 ELWAILGGLLGLALGFLILRLFDRR 120 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4556777888888899999987664
No 38
>PF11947 DUF3464: Protein of unknown function (DUF3464); InterPro: IPR021855 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 137 to 196 amino acids in length.
Probab=57.95 E-value=66 Score=27.58 Aligned_cols=15 Identities=20% Similarity=0.576 Sum_probs=6.6
Q ss_pred CChHHHHHHHHHHHH
Q 024013 162 IPAIPLTMSAGLLFG 176 (274)
Q Consensus 162 iP~~~L~iaaG~lFG 176 (274)
+|..+..++...+||
T Consensus 94 vP~~~~~~~S~~~Fg 108 (153)
T PF11947_consen 94 VPPWAVLLVSLVFFG 108 (153)
T ss_pred cCchHHHHHHHHHHH
Confidence 454444444444444
No 39
>PF07332 DUF1469: Protein of unknown function (DUF1469); InterPro: IPR009937 This entry represents proteins found in hypothetical bacterial proteins where is is annotated as ycf49 or ycf49-like. The function is not known.
Probab=57.76 E-value=93 Score=24.57 Aligned_cols=27 Identities=22% Similarity=0.071 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024013 176 GSVTGTIIVSISGTVAASVAFLIARYF 202 (274)
Q Consensus 176 G~~~G~l~~~lG~~lGa~i~F~IgR~l 202 (274)
++|++++++.....+.+.+.++.++.-
T Consensus 70 ~~~~a~liv~~~~l~la~i~~~~~~~~ 96 (121)
T PF07332_consen 70 PPWLAFLIVAGLYLLLALILLLIGRRR 96 (121)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567777776666666666666655543
No 40
>COG2981 CysZ Uncharacterized protein involved in cysteine biosynthesis [Amino acid transport and metabolism]
Probab=57.13 E-value=48 Score=30.54 Aligned_cols=20 Identities=10% Similarity=0.104 Sum_probs=12.9
Q ss_pred HHhHHHHHHHHHHHHHHHHh
Q 024013 122 YVYKDQINAFLTQFSGFIEG 141 (274)
Q Consensus 122 ~~~~~~L~~~l~~l~~~i~~ 141 (274)
|....+..+|.+.+..++-+
T Consensus 44 ~~~~~~~~~wid~Lm~~iPd 63 (250)
T COG2981 44 WLLFSQALPWIDTLMPGIPD 63 (250)
T ss_pred HHHHHHHHHHHHHHhhcCcc
Confidence 55556777777776666554
No 41
>COG0586 DedA Uncharacterized membrane-associated protein [Function unknown]
Probab=56.74 E-value=95 Score=27.41 Aligned_cols=67 Identities=16% Similarity=0.088 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHhhhcccCCh--HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 024013 130 AFLTQFSGFIEGYGPAGYALFVAVYAGLEILAIPA--IPLTMSAGLL-FGSVTGTIIVSISGTVAASVAFLIARYFARE 205 (274)
Q Consensus 130 ~~l~~l~~~i~~~g~~g~lifvll~i~~~~l~iP~--~~L~iaaG~l-FG~~~G~l~~~lG~~lGa~i~F~IgR~lGr~ 205 (274)
+..++.++|++.||.+.. |+ .=++|+ ++..+.+|+. +.+..=.+++.+|+.+=+.+..++|..+|..
T Consensus 98 ~~l~~a~~~f~r~G~~~v--f~-------~RFip~vRt~ip~~AG~~~m~~~~F~~~n~~ga~iW~~~~~~lGy~~G~~ 167 (208)
T COG0586 98 KKLDKAELLFERHGLFAI--FL-------GRFIPGVRTLVPIVAGMSKMPLRRFLLYNILGALLWALVLTLLGYLLGEV 167 (208)
T ss_pred HHHHHHHHHHHHcCchhh--hh-------hcccchhHhhhhHhhhhccCChHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 345788899999999863 22 123453 4566667765 6666667788888888888888899888854
No 42
>PF10136 SpecificRecomb: Site-specific recombinase; InterPro: IPR011385 This group represents a site-specific recombinase Gcr. Please see the following relevant reference: [].
Probab=55.51 E-value=1.4e+02 Score=31.32 Aligned_cols=22 Identities=14% Similarity=0.324 Sum_probs=15.7
Q ss_pred HHHHHHhcCcHHHHHHHHHHhhc
Q 024013 205 ERILKLVEGNKKFLAIDKAIGEN 227 (274)
Q Consensus 205 ~~v~~~l~~~~kl~ri~~~l~r~ 227 (274)
+++++.++. ++.+|+.+++++|
T Consensus 507 p~L~~~lg~-~r~~r~A~y~~~N 528 (643)
T PF10136_consen 507 PRLKRLLGA-RRAQRLADYVERN 528 (643)
T ss_pred hHHHHHhCH-HHHHHHHHHHHHH
Confidence 456666664 6778888888765
No 43
>PF11990 DUF3487: Protein of unknown function (DUF3487); InterPro: IPR021877 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 121 to 136 amino acids in length. This protein has a conserved RLN sequence motif.
Probab=55.12 E-value=1.2e+02 Score=24.93 Aligned_cols=12 Identities=8% Similarity=0.349 Sum_probs=7.7
Q ss_pred HHHHHHHHhhcc
Q 024013 217 FLAIDKAIGENG 228 (274)
Q Consensus 217 l~ri~~~l~r~G 228 (274)
+++++..++++|
T Consensus 86 ~r~l~~~l~~~g 97 (121)
T PF11990_consen 86 YRRLQWRLARRG 97 (121)
T ss_pred HHHHHHHHHHhc
Confidence 356777777665
No 44
>PF09945 DUF2177: Predicted membrane protein (DUF2177); InterPro: IPR018687 This family of putative membrane proteins has no known function.
Probab=55.09 E-value=1.2e+02 Score=25.15 Aligned_cols=46 Identities=15% Similarity=0.210 Sum_probs=23.6
Q ss_pred HHHHHHHHHhh-ccHHHHHHHHHHHhhhcc--cCChH-----HHHHHHHHHHHH
Q 024013 132 LTQFSGFIEGY-GPAGYALFVAVYAGLEIL--AIPAI-----PLTMSAGLLFGS 177 (274)
Q Consensus 132 l~~l~~~i~~~-g~~g~lifvll~i~~~~l--~iP~~-----~L~iaaG~lFG~ 177 (274)
.+++.+...+. .++..++|=++|+..... ..|.. .-.+..|.+||.
T Consensus 32 ~~~ig~ll~~~~~~~pA~~fYl~yv~gi~~F~~~P~l~~~s~~~a~~~GallGl 85 (128)
T PF09945_consen 32 RPHIGDLLADQPNLWPAIVFYLIYVAGIVYFAVRPALAAGSWLRALLYGALLGL 85 (128)
T ss_pred HHHHHHHhcCCCCcHHHHHHHHHHHHHHheeeeccccccCCHHHHHHHHHHHHH
Confidence 45566666663 334444455555543322 23632 344567777775
No 45
>COG3768 Predicted membrane protein [Function unknown]
Probab=54.97 E-value=83 Score=30.28 Aligned_cols=24 Identities=13% Similarity=0.018 Sum_probs=13.5
Q ss_pred CCCCCCCcCchhHHHHHHHHHHHH
Q 024013 88 DAESEGLEGDTAVKGSILAGVLLL 111 (274)
Q Consensus 88 ~~~~~~~~~~~~~~~~ll~~v~lv 111 (274)
...+.+.+.+.+++|..+....++
T Consensus 51 ~~~~a~~rpr~s~~k~~~~a~~vL 74 (350)
T COG3768 51 APVEAPLRPRSSFWKIMLGAGGVL 74 (350)
T ss_pred hHHhhhccccchHHHHHHHHHHHH
Confidence 344456666666766665554444
No 46
>COG4852 Predicted membrane protein [Function unknown]
Probab=52.47 E-value=1.3e+02 Score=24.80 Aligned_cols=45 Identities=16% Similarity=0.269 Sum_probs=27.2
Q ss_pred HHHHHHHHhhccHHHHHHHHHHHhhhcc--cCCh-----HHHHHHHHHHHHH
Q 024013 133 TQFSGFIEGYGPAGYALFVAVYAGLEIL--AIPA-----IPLTMSAGLLFGS 177 (274)
Q Consensus 133 ~~l~~~i~~~g~~g~lifvll~i~~~~l--~iP~-----~~L~iaaG~lFG~ 177 (274)
..+-+.+.+....-.++|-++|+....+ ..|+ ..-.++.|.++|+
T Consensus 32 ~~iGdlm~Dfr~~PAiiFYlIYv~gltff~l~P~~~kgs~t~alL~GAl~G~ 83 (134)
T COG4852 32 PYIGDLMGDFRLAPAIIFYLIYVVGLTFFVLSPGLEKGSWTYALLNGALYGL 83 (134)
T ss_pred HHHhhhhhhcccchHHHHHHHHHhhhheeEeccccccCccHHHHHhhhHhhh
Confidence 3444445555555556677778754322 3574 2567788899885
No 47
>PF07330 DUF1467: Protein of unknown function (DUF1467); InterPro: IPR009935 This family consists of several bacterial proteins of around 90 residues in length. The function of this family is unknown.
Probab=52.46 E-value=51 Score=25.47 Aligned_cols=19 Identities=0% Similarity=0.116 Sum_probs=7.8
Q ss_pred CCCCCCcCchhHHHHHHHH
Q 024013 89 AESEGLEGDTAVKGSILAG 107 (274)
Q Consensus 89 ~~~~~~~~~~~~~~~ll~~ 107 (274)
.+..-+...+..||.+..-
T Consensus 39 t~~sAP~~~~l~rk~~~TT 57 (85)
T PF07330_consen 39 TDPSAPANPRLKRKALITT 57 (85)
T ss_pred CCCCCCCCchHHHHHHHHH
Confidence 3333344444444444333
No 48
>PRK12768 CysZ-like protein; Reviewed
Probab=51.99 E-value=1.9e+02 Score=26.43 Aligned_cols=21 Identities=14% Similarity=0.161 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 024013 182 IIVSISGTVAASVAFLIARYF 202 (274)
Q Consensus 182 l~~~lG~~lGa~i~F~IgR~l 202 (274)
+.+.++..+++...=.++++.
T Consensus 84 lf~~va~~IaapF~~~lae~V 104 (240)
T PRK12768 84 LIAPVTALIAGFFLDDVAEIV 104 (240)
T ss_pred HHHHHHHHHHHHhHHHHHHHH
Confidence 333444444444443444443
No 49
>COG3086 RseC Positive regulator of sigma E activity [Signal transduction mechanisms]
Probab=51.95 E-value=47 Score=28.37 Aligned_cols=24 Identities=29% Similarity=0.609 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHH
Q 024013 182 IIVSISGTVAASVAFLIARYFARE 205 (274)
Q Consensus 182 l~~~lG~~lGa~i~F~IgR~lGr~ 205 (274)
.+..+++.+|..++|++.|.+-|.
T Consensus 104 ~~~~~~~~lg~~l~fl~~r~ysRk 127 (150)
T COG3086 104 LIVIFGAFLGLALGFLLARRYSRK 127 (150)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556788889999999999987664
No 50
>PRK10862 SoxR reducing system protein RseC; Provisional
Probab=51.87 E-value=35 Score=28.95 Aligned_cols=24 Identities=21% Similarity=0.326 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHH
Q 024013 182 IIVSISGTVAASVAFLIARYFARE 205 (274)
Q Consensus 182 l~~~lG~~lGa~i~F~IgR~lGr~ 205 (274)
+++.+++.+|..++|++.|++-+.
T Consensus 104 ~~~~~~~~~g~~~g~~~~r~~~~~ 127 (154)
T PRK10862 104 LAALCGALLGGVGGFLLARGLSRK 127 (154)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344566777778888888876543
No 51
>PRK12821 aspartyl/glutamyl-tRNA amidotransferase subunit C-like protein; Provisional
Probab=51.69 E-value=2.1e+02 Score=28.87 Aligned_cols=27 Identities=26% Similarity=0.464 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024013 165 IPLTMSAGLLFGSVTGTIIVSISGTVA 191 (274)
Q Consensus 165 ~~L~iaaG~lFG~~~G~l~~~lG~~lG 191 (274)
.+.+..+|++|||++|.+...++-.+|
T Consensus 99 fIpi~l~G~LFGP~~G~l~g~lsDlLg 125 (477)
T PRK12821 99 LILVKISGLLFGPIIGIFSAATIDFLT 125 (477)
T ss_pred hHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 578889999999999999988888777
No 52
>TIGR03750 conj_TIGR03750 conjugative transfer region protein, TIGR03750 family. Members of this protein family are found occasionally on plasmids. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=50.82 E-value=1.2e+02 Score=24.65 Aligned_cols=12 Identities=8% Similarity=0.318 Sum_probs=7.5
Q ss_pred HHHHHHHHhhcc
Q 024013 217 FLAIDKAIGENG 228 (274)
Q Consensus 217 l~ri~~~l~r~G 228 (274)
+++++....+++
T Consensus 83 ~r~l~~~~~~~~ 94 (111)
T TIGR03750 83 YRKLEWKLARLG 94 (111)
T ss_pred HHHHHHHHHHcC
Confidence 456666666665
No 53
>PF12794 MscS_TM: Mechanosensitive ion channel inner membrane domain 1
Probab=50.61 E-value=24 Score=33.72 Aligned_cols=33 Identities=18% Similarity=0.265 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 024013 102 GSILAGVLLLVVVGGFGTMGYVYKDQINAFLTQF 135 (274)
Q Consensus 102 ~~ll~~v~lv~~v~~l~~~~~~~~~~L~~~l~~l 135 (274)
++++..++.++++++++++ |-..-+...++|.+
T Consensus 305 lrL~~~~l~~~~~~~l~~i-Wsdll~a~s~Ld~I 337 (340)
T PF12794_consen 305 LRLLRSILLLILLVGLYWI-WSDLLPAFSYLDNI 337 (340)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhccc
Confidence 3445555555555545322 43322334444443
No 54
>PF14163 SieB: Superinfection exclusion protein B
Probab=50.46 E-value=81 Score=26.23 Aligned_cols=28 Identities=18% Similarity=0.185 Sum_probs=16.7
Q ss_pred hcccCChHHHHHHHH----HHHHHHHHHHHHH
Q 024013 158 EILAIPAIPLTMSAG----LLFGSVTGTIIVS 185 (274)
Q Consensus 158 ~~l~iP~~~L~iaaG----~lFG~~~G~l~~~ 185 (274)
.+++.|..++....- ..+++|.|.....
T Consensus 11 ~llf~P~~~~~~l~l~~~~~~y~~~i~~~fl~ 42 (151)
T PF14163_consen 11 LLLFLPESLLEWLNLDKFEIKYQPWIGLIFLF 42 (151)
T ss_pred HHHHCCHHHHHHhCcchHHHhcchHHHHHHHH
Confidence 345678766655443 3467777765543
No 55
>COG4720 Predicted membrane protein [Function unknown]
Probab=50.04 E-value=42 Score=29.50 Aligned_cols=54 Identities=19% Similarity=0.119 Sum_probs=36.3
Q ss_pred ccHHHHHHHHHHHhhhcccCCh------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024013 143 GPAGYALFVAVYAGLEILAIPA------IPLTMSAGLLFGSVTGTIIVSISGTVAASVAF 196 (274)
Q Consensus 143 g~~g~lifvll~i~~~~l~iP~------~~L~iaaG~lFG~~~G~l~~~lG~~lGa~i~F 196 (274)
+.++.+.|++......-+|+|. .....++.++||+..|.+...+|..+-..+++
T Consensus 13 ~i~aALvvvlg~~i~IPtp~~~~~i~L~da~i~las~lfGs~~G~lvg~iG~al~Dll~g 72 (177)
T COG4720 13 GIGAALVVVLGRLIRIPTPIPNGFLTLGDAGIALASFLFGSRAGALVGGLGHALKDLLSG 72 (177)
T ss_pred HHHHHHHHHHHheeEecCCCCCCeeeHHHHHHHHHHHHHcchHHHHHHHHHHHHHHHhcC
Confidence 5555555554444333334441 36778888999999999999999988766663
No 56
>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]
Probab=50.00 E-value=94 Score=31.43 Aligned_cols=10 Identities=30% Similarity=0.075 Sum_probs=5.8
Q ss_pred HhhhHHhhcc
Q 024013 230 RVVTLLRLSP 239 (274)
Q Consensus 230 ~~V~llRliP 239 (274)
..+.++-++|
T Consensus 187 LGvavg~llp 196 (480)
T KOG2563|consen 187 LGVAVGFLLP 196 (480)
T ss_pred HHHHHHhhcc
Confidence 4456666665
No 57
>COG3105 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=49.39 E-value=47 Score=27.86 Aligned_cols=26 Identities=27% Similarity=0.121 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhH
Q 024013 179 TGTIIVSISGTVAASVAFLIARYFAR 204 (274)
Q Consensus 179 ~G~l~~~lG~~lGa~i~F~IgR~lGr 204 (274)
..+.+..+|-++|-+|+|+|.|..-+
T Consensus 6 ~~W~~a~igLvvGi~IG~li~Rlt~~ 31 (138)
T COG3105 6 MTWEYALIGLVVGIIIGALIARLTNR 31 (138)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcch
Confidence 34567788889999999999997644
No 58
>PF12822 DUF3816: Protein of unknown function (DUF3816); InterPro: IPR024529 Energy-coupling factor (ECF) transporters consist of a substrate-specific component and an energy-coupling module []. The substrate-binding component is a small integral membrane protein which captures specific substrates and forms an active transporter in the presence of the energy-coupling AT module. The energy coupling module is composed of an ATPase typical of the ATP binding cassette (ABC) superfamily and a characteristic transmembrane protein. Unlike the ABC transporters, an energy coupling module can be shared between multiple different substrate-binding components. This entry represents the substrate-specific component from a number of different ECF transporters.; PDB: 3P5N_A.
Probab=47.66 E-value=18 Score=30.16 Aligned_cols=31 Identities=26% Similarity=0.383 Sum_probs=22.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024013 164 AIPLTMSAGLLFGSVTGTIIVSISGTVAASV 194 (274)
Q Consensus 164 ~~~L~iaaG~lFG~~~G~l~~~lG~~lGa~i 194 (274)
..+..+.+|+++|++.|.+...+...++..+
T Consensus 31 ~~i~~ii~~~l~Gp~~G~~~g~i~~il~~l~ 61 (172)
T PF12822_consen 31 SFIPIIIAGFLLGPVWGALVGFISDILSFLI 61 (172)
T ss_dssp CCHHHHHHHTTS-HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567778899999999988877766666554
No 59
>COG4732 Predicted membrane protein [Function unknown]
Probab=47.61 E-value=32 Score=29.72 Aligned_cols=24 Identities=13% Similarity=0.243 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 024013 165 IPLTMSAGLLFGSVTGTIIVSISG 188 (274)
Q Consensus 165 ~~L~iaaG~lFG~~~G~l~~~lG~ 188 (274)
..+.+++|.+.|+|++.....+.+
T Consensus 41 h~VNvlAgV~~GPwyala~A~~~s 64 (177)
T COG4732 41 HFVNVLAGVMMGPWYALAMALVTS 64 (177)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHH
Confidence 479999999999999886655443
No 60
>COG2426 Predicted membrane protein [Function unknown]
Probab=47.17 E-value=1.7e+02 Score=24.64 Aligned_cols=46 Identities=15% Similarity=0.041 Sum_probs=31.3
Q ss_pred HHHHhhcchHhhhHHhhccccchhh---hhHhhhccCCChhhHHHHHhhh
Q 024013 221 DKAIGENGFRVVTLLRLSPLLPFSL---GNYLYGLTSVKFVPYVLGRYDY 267 (274)
Q Consensus 221 ~~~l~r~G~~~V~llRliPviP~~v---vny~aGls~i~~~~Fll~tllG 267 (274)
...++|+||..+++.--+| .|-+- -+++|-+..++.+.-+.+..+|
T Consensus 76 ~~yVER~G~iGL~iFvAIP-LP~TG~wtgaLaA~llgI~~r~a~~al~~G 124 (142)
T COG2426 76 KGYVERYGFIGLIIFVAIP-LPGTGAWTGALAAYLLGIRERFAFAALSAG 124 (142)
T ss_pred cCcHhhhhhhhhhheeecc-CCCccHhHHHHHHHHHcCchHHHHHHHHHh
Confidence 3457889998777666677 46443 4567777888887766655544
No 61
>COG1580 FliL Flagellar basal body-associated protein [Cell motility and secretion]
Probab=46.09 E-value=23 Score=30.52 Aligned_cols=31 Identities=13% Similarity=0.143 Sum_probs=12.4
Q ss_pred CcCchhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 024013 94 LEGDTAVKGSILAGVLLLVVVGGFGTMGYVY 124 (274)
Q Consensus 94 ~~~~~~~~~~ll~~v~lv~~v~~l~~~~~~~ 124 (274)
..++....+.++++++++.++++.++..|++
T Consensus 11 ~~~~k~~~~I~liv~ivl~~~a~~~~~~~~~ 41 (159)
T COG1580 11 AKKKKKSLWILLIVLIVLLALAGAGYFFWFG 41 (159)
T ss_pred ccCCCceeehHHHHHHHHHHHHHHHHHHhhh
Confidence 3333333334344444444444343343544
No 62
>COG2839 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=43.97 E-value=1.9e+02 Score=24.99 Aligned_cols=28 Identities=32% Similarity=0.498 Sum_probs=17.3
Q ss_pred HHHHHHhhhcccCChHHHHHHHHHHHHH
Q 024013 150 FVAVYAGLEILAIPAIPLTMSAGLLFGS 177 (274)
Q Consensus 150 fvll~i~~~~l~iP~~~L~iaaG~lFG~ 177 (274)
|++-++......+|++.++.++-.+++.
T Consensus 13 ~lvg~vGlv~PaiPs~lli~~G~l~y~~ 40 (160)
T COG2839 13 FLVGFVGLVYPAIPSTLLIFAGFLAYGF 40 (160)
T ss_pred HHHHHHhhhhcccchHHHHHHHHHHHHh
Confidence 4444444445568988888877655553
No 63
>KOG3249 consensus Uncharacterized conserved protein [Function unknown]
Probab=43.68 E-value=1.3e+02 Score=26.21 Aligned_cols=36 Identities=8% Similarity=0.104 Sum_probs=20.0
Q ss_pred CCCccccccCCCCCCCCCcchhccCCCCCCCCCCCcCch
Q 024013 60 NAPRSLGWFFNPKGDDDDNNNRIQGNGMDAESEGLEGDT 98 (274)
Q Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (274)
..|. ++....|++.+..-++| ++|+ ..++||++..+
T Consensus 48 ~~p~-f~~a~~~npr~es~~~~-~~e~-v~e~qP~~St~ 83 (181)
T KOG3249|consen 48 DQPS-FIVAVIPNPRAESFDDD-DDED-VPEKQPPSSTR 83 (181)
T ss_pred cCCc-ceeeecCCCchhhccCC-cccc-CchhcCCcccc
Confidence 3455 77777777766332222 2444 66667666554
No 64
>PF15451 DUF4632: Domain of unknown function (DUF4632)
Probab=43.64 E-value=30 Score=25.29 Aligned_cols=14 Identities=14% Similarity=-0.104 Sum_probs=6.7
Q ss_pred CCcCchhHHHHHHH
Q 024013 93 GLEGDTAVKGSILA 106 (274)
Q Consensus 93 ~~~~~~~~~~~ll~ 106 (274)
.+.+=+.+++.|-.
T Consensus 28 rs~gwralrrlwdr 41 (71)
T PF15451_consen 28 RSAGWRALRRLWDR 41 (71)
T ss_pred ccccHHHHHHHHHH
Confidence 34444555555544
No 65
>PF11449 DUF2899: Protein of unknown function (DUF2899); InterPro: IPR021552 This is a bacterial family of uncharacterised proteins.
Probab=41.59 E-value=2.4e+02 Score=26.85 Aligned_cols=17 Identities=12% Similarity=0.251 Sum_probs=12.5
Q ss_pred HHHHHHHhhccHHHHHH
Q 024013 134 QFSGFIEGYGPAGYALF 150 (274)
Q Consensus 134 ~l~~~i~~~g~~g~lif 150 (274)
++.+++.+++.+.+++-
T Consensus 209 dl~~~l~~~~~~~plia 225 (298)
T PF11449_consen 209 DLAALLSGNGILQPLIA 225 (298)
T ss_pred HHHHHHHhCchHHHHHH
Confidence 37778888898887543
No 66
>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=40.96 E-value=1.8e+02 Score=29.40 Aligned_cols=12 Identities=8% Similarity=0.562 Sum_probs=6.1
Q ss_pred HHHHHHHHHhHH
Q 024013 194 VAFLIARYFARE 205 (274)
Q Consensus 194 i~F~IgR~lGr~ 205 (274)
+.+.+|+|++++
T Consensus 155 ~~~~lg~wy~~~ 166 (495)
T KOG2533|consen 155 VVAILGNWYGKS 166 (495)
T ss_pred HHHHHHhhcChh
Confidence 345555555543
No 67
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=40.08 E-value=1.3e+02 Score=21.26 Aligned_cols=11 Identities=18% Similarity=0.443 Sum_probs=5.3
Q ss_pred HHHHHHHHHHh
Q 024013 215 KKFLAIDKAIG 225 (274)
Q Consensus 215 ~kl~ri~~~l~ 225 (274)
+++++.++.++
T Consensus 55 k~l~~le~e~~ 65 (68)
T PF06305_consen 55 KELKKLEKELE 65 (68)
T ss_pred HHHHHHHHHHH
Confidence 34555555443
No 68
>PRK11285 araH L-arabinose transporter permease protein; Provisional
Probab=39.97 E-value=3.3e+02 Score=25.77 Aligned_cols=12 Identities=42% Similarity=0.570 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHH
Q 024013 189 TVAASVAFLIAR 200 (274)
Q Consensus 189 ~lGa~i~F~IgR 200 (274)
.+|....+.+.|
T Consensus 120 l~G~~~g~lv~~ 131 (333)
T PRK11285 120 AVGLVNGFVIAR 131 (333)
T ss_pred HHHHHHHHHHHH
Confidence 344444444444
No 69
>PF01148 CTP_transf_1: Cytidylyltransferase family; InterPro: IPR000374 Phosphatidate cytidylyltransferase (2.7.7.41 from EC) [, , ] (also known as CDP- diacylglycerol synthase) (CDS) is the enzyme that catalyzes the synthesis of CDP-diacylglycerol from CTP and phosphatidate (PA): CTP + phosphatidate = diphosphate + CDP-diacylglycerol CDP-diacylglycerol is an important branch point intermediate in both prokaryotic and eukaryotic organisms. CDS is a membrane-bound enzyme.; GO: 0016772 transferase activity, transferring phosphorus-containing groups, 0016020 membrane
Probab=38.95 E-value=2.3e+02 Score=24.77 Aligned_cols=36 Identities=19% Similarity=0.343 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcCcHHHH
Q 024013 182 IIVSISGTVAASVAFLIARYFARERILKLVEGNKKFL 218 (274)
Q Consensus 182 l~~~lG~~lGa~i~F~IgR~lGr~~v~~~l~~~~kl~ 218 (274)
+...+....|...+|.+||++||. .....+.+|..|
T Consensus 133 ~~~i~~~~~gD~~A~l~G~~fGk~-~~~~~sp~KT~E 168 (259)
T PF01148_consen 133 LIGILILGIGDSFAYLVGRRFGKH-LAPKISPKKTWE 168 (259)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCC-cCCCCCCCCCHH
Confidence 344555668999999999999987 333344344443
No 70
>PRK10847 hypothetical protein; Provisional
Probab=38.57 E-value=1.4e+02 Score=26.39 Aligned_cols=64 Identities=14% Similarity=0.092 Sum_probs=43.1
Q ss_pred HHHHHHHHHhhccHHHHHHHHHHHhhhcccCCh--HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 024013 132 LTQFSGFIEGYGPAGYALFVAVYAGLEILAIPA--IPLTMSAGLL-FGSVTGTIIVSISGTVAASVAFLIARYFAR 204 (274)
Q Consensus 132 l~~l~~~i~~~g~~g~lifvll~i~~~~l~iP~--~~L~iaaG~l-FG~~~G~l~~~lG~~lGa~i~F~IgR~lGr 204 (274)
.++.+++++.+|.+.. ++ .=++|+ ++..+++|.. +....-.+.+.+|+++-+.+..++|..+|.
T Consensus 114 l~~~~~~~~r~G~~~v--~i-------~RfiP~~R~~~~~~aG~~~m~~~~F~~~~~lg~~~W~~~~~~~Gy~~g~ 180 (219)
T PRK10847 114 LDKTHQFYEKHGGKTI--IL-------ARFVPIVRTFAPFVAGMGHMSYRHFAAYNVIGALLWVLLFTYAGYFFGT 180 (219)
T ss_pred HHHHHHHHHHcCCEEE--Ee-------eCCccchHhHHHHHhHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 4677888888888642 21 123443 4555666655 566666677788888888888888888774
No 71
>PLN03100 Permease subunit of ER-derived-lipid transporter; Provisional
Probab=37.70 E-value=3.6e+02 Score=25.50 Aligned_cols=13 Identities=8% Similarity=0.056 Sum_probs=6.8
Q ss_pred hcchHhhhHHhhc
Q 024013 226 ENGFRVVTLLRLS 238 (274)
Q Consensus 226 r~G~~~V~llRli 238 (274)
=+...++++-|++
T Consensus 170 idPi~yLV~PRvl 182 (292)
T PLN03100 170 TDPVDYLVTPRVI 182 (292)
T ss_pred CChHHHHHHHHHH
Confidence 3455555555554
No 72
>PF03616 Glt_symporter: Sodium/glutamate symporter; InterPro: IPR004445 This is a family of sodium/glutamate symporters (glutamate permeases), which catalyse the sodium-dependent uptake of extracellular glutamate. The protein is located in the inner membrane.; GO: 0015501 glutamate:sodium symporter activity, 0015813 L-glutamate transport, 0016021 integral to membrane
Probab=37.70 E-value=3.9e+02 Score=25.86 Aligned_cols=10 Identities=10% Similarity=0.275 Sum_probs=5.2
Q ss_pred HHHHHHhHHH
Q 024013 197 LIARYFARER 206 (274)
Q Consensus 197 ~IgR~lGr~~ 206 (274)
...|.+|++.
T Consensus 326 v~fr~~gkdy 335 (368)
T PF03616_consen 326 VTFRVMGKDY 335 (368)
T ss_pred HhhhhhCCCh
Confidence 3455566653
No 73
>PRK11268 pstA phosphate transporter permease subunit PtsA; Provisional
Probab=37.17 E-value=2.9e+02 Score=25.43 Aligned_cols=16 Identities=13% Similarity=0.368 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHH
Q 024013 186 ISGTVAASVAFLIARY 201 (274)
Q Consensus 186 lG~~lGa~i~F~IgR~ 201 (274)
++..+|...+|+++|+
T Consensus 96 i~~~lg~~~a~~l~~~ 111 (295)
T PRK11268 96 VGTPLGIMAGIYLAEY 111 (295)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3344555555555554
No 74
>PRK07021 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=37.15 E-value=47 Score=28.19 Aligned_cols=8 Identities=0% Similarity=0.152 Sum_probs=3.4
Q ss_pred HHHHHHHh
Q 024013 218 LAIDKAIG 225 (274)
Q Consensus 218 ~ri~~~l~ 225 (274)
+++++.++
T Consensus 136 ~~in~~l~ 143 (162)
T PRK07021 136 QTLSQPLV 143 (162)
T ss_pred HHHHHHHh
Confidence 34444443
No 75
>PRK14472 F0F1 ATP synthase subunit B; Provisional
Probab=36.85 E-value=59 Score=27.79 Aligned_cols=43 Identities=26% Similarity=0.350 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhc
Q 024013 167 LTMSAGLLFGSVTGTIIVSISGTVAASVAFLIARYFARERILKLVE 212 (274)
Q Consensus 167 L~iaaG~lFG~~~G~l~~~lG~~lGa~i~F~IgR~lGr~~v~~~l~ 212 (274)
++++.|.+|++.+|.++..+ +.-.+.+++-+++.-+.+.+.+.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~---i~Flil~~lL~~~l~kpi~~~l~ 48 (175)
T PRK14472 6 IILLSGGLLSPNPGLIFWTA---VTFVIVLLILKKIAWGPILSALE 48 (175)
T ss_pred hhhhcCCccCCCHHHHHHHH---HHHHHHHHHHHHHhHHHHHHHHH
Confidence 44455557777665543222 22234444444444444555544
No 76
>PF11085 YqhR: Conserved membrane protein YqhR; InterPro: IPR024563 This family of proteins is conserved in the Bacillaceae family of the Firmicutes. Their function is not known.
Probab=36.55 E-value=1.5e+02 Score=26.02 Aligned_cols=8 Identities=25% Similarity=0.505 Sum_probs=3.7
Q ss_pred HHHHHHHH
Q 024013 110 LLVVVGGF 117 (274)
Q Consensus 110 lv~~v~~l 117 (274)
.+++.|++
T Consensus 25 ~iGf~gGl 32 (173)
T PF11085_consen 25 EIGFFGGL 32 (173)
T ss_pred HHHHHHHH
Confidence 44444444
No 77
>TIGR00771 DcuC c4-dicarboxylate anaerobic carrier family protein. catalyzing fumarate-succinate exchange and fumarate uptake.
Probab=36.24 E-value=4.1e+02 Score=25.79 Aligned_cols=33 Identities=21% Similarity=0.023 Sum_probs=24.9
Q ss_pred hhHHhhccccchhh-hhHhhhccCCChhhHHHHHhh
Q 024013 232 VTLLRLSPLLPFSL-GNYLYGLTSVKFVPYVLGRYD 266 (274)
Q Consensus 232 V~llRliPviP~~v-vny~aGls~i~~~~Fll~tll 266 (274)
..++|.+| |... +.+++|+.+++..+..-.++.
T Consensus 348 ~~iG~~tp--Pv~~~l~v~~gia~v~~~~i~k~~~~ 381 (388)
T TIGR00771 348 GALGRTAS--PIAGVVVVCAGLAMVSPFEVVKRTAP 381 (388)
T ss_pred HHHhCcCC--cHHHHHHHHHhhcCCCHHHHHHHHHH
Confidence 44678887 5554 556889999999888877664
No 78
>PF06738 DUF1212: Protein of unknown function (DUF1212); InterPro: IPR010619 This entry represents a predicted domain found within a number of hypothetical proteins of unknown function found in eukaryotes, bacteria and archaea. Some of these sequences are predicted to be membrane proteins.
Probab=36.17 E-value=2.2e+02 Score=24.22 Aligned_cols=24 Identities=21% Similarity=0.246 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 024013 178 VTGTIIVSISGTVAASVAFLIARY 201 (274)
Q Consensus 178 ~~G~l~~~lG~~lGa~i~F~IgR~ 201 (274)
|.-.+++.+.+.++..+..++.|+
T Consensus 125 ~~~~~~a~i~g~~~~~~~~~~~r~ 148 (193)
T PF06738_consen 125 WIDMIVAFILGLLVGLLRQLLSRR 148 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 444444444444444444444444
No 79
>COG1972 NupC Nucleoside permease [Nucleotide transport and metabolism]
Probab=36.09 E-value=95 Score=30.64 Aligned_cols=19 Identities=37% Similarity=0.629 Sum_probs=10.9
Q ss_pred CCCCccc--cccCCCCCCCCC
Q 024013 59 TNAPRSL--GWFFNPKGDDDD 77 (274)
Q Consensus 59 ~~~~~~~--~~~~~~~~~~~~ 77 (274)
-|+|.++ -...+|..++++
T Consensus 201 m~~p~gli~Akii~P~t~~~~ 221 (404)
T COG1972 201 MNAPGGLLFAKLINPYTEDEQ 221 (404)
T ss_pred HhcchHHHHHHhcCCCCCCcc
Confidence 3566654 556677655443
No 80
>PRK12773 flhB flagellar biosynthesis protein FlhB; Reviewed
Probab=36.07 E-value=1.7e+02 Score=30.66 Aligned_cols=12 Identities=33% Similarity=0.335 Sum_probs=4.7
Q ss_pred HHHHHHHHHHHH
Q 024013 102 GSILAGVLLLVV 113 (274)
Q Consensus 102 ~~ll~~v~lv~~ 113 (274)
+=+-..+.+++.
T Consensus 322 kEL~sA~~Lla~ 333 (646)
T PRK12773 322 PELPAAVVLLAG 333 (646)
T ss_pred HhHHHHHHHHHH
Confidence 333444444333
No 81
>PF09512 ThiW: Thiamine-precursor transporter protein (ThiW); InterPro: IPR012652 Levels of thiamine pyrophosphate (TPP) or thiamine regulate transcription or translation of a number of thiamine biosynthesis, salvage, or transport genes in a wide range of prokaryotes. The mechanism involves direct binding, with no protein involved, to a structural element called THI found in the untranslated upstream region of thiamine metabolism gene operons. This element is called a riboswitch and is seen also for other metabolites such as FMN and glycine. This protein family consists of proteins identified in operons controlled by the THI riboswitch and designated ThiW. The hydrophobic nature of this protein and reconstructed metabolic background suggests that this protein acts in transport of a thiazole precursor of thiamine.
Probab=35.85 E-value=68 Score=27.48 Aligned_cols=16 Identities=19% Similarity=0.301 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHH
Q 024013 166 PLTMSAGLLFGSVTGT 181 (274)
Q Consensus 166 ~L~iaaG~lFG~~~G~ 181 (274)
.+.+.+|.+.|||++.
T Consensus 33 ~iNviaaVlLGP~ya~ 48 (150)
T PF09512_consen 33 MINVIAAVLLGPWYAV 48 (150)
T ss_pred HHHHHHHHHhchHHHH
Confidence 4555555555555544
No 82
>TIGR00937 2A51 chromate transporter, chromate ion transporter (CHR) family. Cutoffs for this model have now been lowered, compared to a previous version, giving the model a scope more similar to that of Pfam model pfam02417. Members of the original, more narrowly defined family score above 500.00 bits.
Probab=35.76 E-value=3.5e+02 Score=26.16 Aligned_cols=64 Identities=16% Similarity=0.157 Sum_probs=42.1
Q ss_pred HHhhccHHHHHHHHHHHhhhcccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Q 024013 139 IEGYGPAGYALFVAVYAGLEILAIPAIPLTMSAGLLFGSVTGTIIVSISGTVAA-SVAFLIARYF 202 (274)
Q Consensus 139 i~~~g~~g~lifvll~i~~~~l~iP~~~L~iaaG~lFG~~~G~l~~~lG~~lGa-~i~F~IgR~l 202 (274)
++++++..---|.-.+.+...+|=|...+....|+..+-+.|.+++++|..+=+ .+.+.++..+
T Consensus 233 V~~~~Wlt~~eF~~~~alaq~~PGP~~~~a~~iG~~~~G~~Ga~~A~~g~~lP~~lli~~l~~~~ 297 (368)
T TIGR00937 233 VDRGNWLTAGQFLDGIALAQITPGPLFITATFIGYLVAGFPGAIAATVAIFLPSFLLVLGVLPYF 297 (368)
T ss_pred HhccCCCCHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445444456666666666777765677788888888889988888887644 4445555544
No 83
>PRK11281 hypothetical protein; Provisional
Probab=35.61 E-value=4.4e+02 Score=29.66 Aligned_cols=17 Identities=24% Similarity=0.532 Sum_probs=11.5
Q ss_pred cCChHHHHHHHHHHHHH
Q 024013 161 AIPAIPLTMSAGLLFGS 177 (274)
Q Consensus 161 ~iP~~~L~iaaG~lFG~ 177 (274)
.+|..++.+++|+.+..
T Consensus 553 alp~~l~~~~~g~~~~~ 569 (1113)
T PRK11281 553 ALPVTLIFLAVGLILLT 569 (1113)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 46766777777877654
No 84
>PF12270 Cyt_c_ox_IV: Cytochrome c oxidase subunit IV; InterPro: IPR021050 This family of proteins is found in bacteria. Proteins in this family are approximately 140 amino acids in length. This family is the fourth subunit of the cytochrome c oxidase complex. This subunit does not have a catalytic capacity but instead, is required for assembly and/or stability of the complex []. ; GO: 0004129 cytochrome-c oxidase activity, 0055114 oxidation-reduction process, 0016021 integral to membrane
Probab=34.89 E-value=2.7e+02 Score=23.43 Aligned_cols=28 Identities=25% Similarity=0.217 Sum_probs=13.6
Q ss_pred CCCCCCCcCchhHHHHHHHHHHHHHHHH
Q 024013 88 DAESEGLEGDTAVKGSILAGVLLLVVVG 115 (274)
Q Consensus 88 ~~~~~~~~~~~~~~~~ll~~v~lv~~v~ 115 (274)
.+.+..-=.+.+.+..++.....++.++
T Consensus 77 gAGe~GfFsP~SwWPl~la~~~al~~lG 104 (137)
T PF12270_consen 77 GAGELGFFSPHSWWPLVLAAAAALVFLG 104 (137)
T ss_pred CCCCcCcCCCccHhHHHHHHHHHHHHHH
Confidence 4444444444455555555554444444
No 85
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=33.39 E-value=5e+02 Score=29.24 Aligned_cols=31 Identities=26% Similarity=0.209 Sum_probs=16.4
Q ss_pred CChHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Q 024013 162 IPAIPLTMSAGL-LFGSVTGTIIVSISGTVAA 192 (274)
Q Consensus 162 iP~~~L~iaaG~-lFG~~~G~l~~~lG~~lGa 192 (274)
+|..++..++|+ +++.|.......+|..+.+
T Consensus 532 lP~pl~~~~~g~~l~~~~~~~~~~~~~~~~~~ 563 (1109)
T PRK10929 532 SPLPVLWAALGYGLQNAWPYPLAVAIGDGVTA 563 (1109)
T ss_pred hHHHHHHHHHHHHhhhhhhhhhHhhccHHHHH
Confidence 466666667776 4444444444445544443
No 86
>PF13829 DUF4191: Domain of unknown function (DUF4191)
Probab=33.14 E-value=3.8e+02 Score=24.44 Aligned_cols=42 Identities=24% Similarity=0.218 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhHHHHHH
Q 024013 166 PLTMSAGLLFGSVTGTIIVSISGTVAASVA-FLIARYFARERILK 209 (274)
Q Consensus 166 ~L~iaaG~lFG~~~G~l~~~lG~~lGa~i~-F~IgR~lGr~~v~~ 209 (274)
++.++.|+++|.|+-++ .+|..+|.+++ +.++|..-+....+
T Consensus 40 ~v~v~ig~l~~~~~~~~--i~gi~~g~l~am~vl~rra~ra~Y~q 82 (224)
T PF13829_consen 40 AVFVLIGLLFGSWWYWL--IIGILLGLLAAMIVLSRRAQRAAYAQ 82 (224)
T ss_pred HHHHHHHHHHccHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566777888654433 34455555554 46677655443333
No 87
>PF06897 DUF1269: Protein of unknown function (DUF1269); InterPro: IPR009200 There are currently no experimental data for members of this group or their homologues. However, these proteins are predicted to contain two or more transmembrane segments.
Probab=32.65 E-value=1.5e+02 Score=23.41 Aligned_cols=13 Identities=23% Similarity=0.210 Sum_probs=8.1
Q ss_pred HHHHHHHHHhhcc
Q 024013 216 KFLAIDKAIGENG 228 (274)
Q Consensus 216 kl~ri~~~l~r~G 228 (274)
..+++.+.++++|
T Consensus 67 ~~d~v~~~l~~~g 79 (102)
T PF06897_consen 67 TEDKVDAALRKFG 79 (102)
T ss_pred CHHHHHHHHHhcC
Confidence 4556666666665
No 88
>KOG3140 consensus Predicted membrane protein [Function unknown]
Probab=32.51 E-value=2.3e+02 Score=26.57 Aligned_cols=109 Identities=22% Similarity=0.092 Sum_probs=60.3
Q ss_pred ccHHHHHHHHHHHhhhcccCC-hHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhHHHHHHHhcCcHHHHHH
Q 024013 143 GPAGYALFVAVYAGLEILAIP-AIPLTMSAGLLFGSVTGTIIVSISGT-VAASVAFLIARYFARERILKLVEGNKKFLAI 220 (274)
Q Consensus 143 g~~g~lifvll~i~~~~l~iP-~~~L~iaaG~lFG~~~G~l~~~lG~~-lGa~i~F~IgR~lGr~~v~~~l~~~~kl~ri 220 (274)
++++.....+.++...+...| ...+.+..++......|..+.....+ .++....++++++.. +......+.+..+
T Consensus 44 ~if~~~~~~l~~i~~s~~~~~~~~~l~lp~~i~~~~~L~~vl~~y~~~~~a~~~~~~~~~y~f~---qtfaipG~~fls~ 120 (275)
T KOG3140|consen 44 GIFLSFSLVLVYIYLSAPALSELGVLKLPRDILDLRGLGAVLRKYKATYFAAVLLGFIAAYVFL---QTFAIPGSIFLSL 120 (275)
T ss_pred HHhhHHHHHHHHHHHcccCccccccccccchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH---HhcccccHHHHHH
Confidence 344444444444444444443 44444444444444444444443333 344444555555543 2222223566677
Q ss_pred HHHHhhcchHhhhHHhhccccchhhhhHhhhccCC
Q 024013 221 DKAIGENGFRVVTLLRLSPLLPFSLGNYLYGLTSV 255 (274)
Q Consensus 221 ~~~l~r~G~~~V~llRliPviP~~vvny~aGls~i 255 (274)
....-..+++.++++|+.|..+ ...||+...+=.
T Consensus 121 ~aG~l~~~~~g~~Lv~~~~~~g-a~~cy~lS~~f~ 154 (275)
T KOG3140|consen 121 LAGALFGVFKGVLLVCLLSTLG-ASLCYLLSKLFG 154 (275)
T ss_pred HHHHhhccceEEeeeeeccchh-HHHHHHHHHHHh
Confidence 7777778899999999999654 778887655443
No 89
>PF12794 MscS_TM: Mechanosensitive ion channel inner membrane domain 1
Probab=32.39 E-value=2.8e+02 Score=26.43 Aligned_cols=16 Identities=31% Similarity=0.503 Sum_probs=10.0
Q ss_pred cCChHHHHHHHHHHHH
Q 024013 161 AIPAIPLTMSAGLLFG 176 (274)
Q Consensus 161 ~iP~~~L~iaaG~lFG 176 (274)
.+|...+..+.|+.+.
T Consensus 57 alp~pl~~~~~g~~L~ 72 (340)
T PF12794_consen 57 ALPLPLLLLAIGYLLQ 72 (340)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4565566666776655
No 90
>PF05684 DUF819: Protein of unknown function (DUF819); InterPro: IPR008537 This family contains proteins of unknown function from archaeal, bacterial and plant species.
Probab=31.83 E-value=4.9e+02 Score=25.32 Aligned_cols=18 Identities=6% Similarity=0.261 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHhHH
Q 024013 188 GTVAASVAFLIARYFARE 205 (274)
Q Consensus 188 ~~lGa~i~F~IgR~lGr~ 205 (274)
..+...+.+.++|.+.-+
T Consensus 303 l~iH~~l~l~~~kl~k~~ 320 (378)
T PF05684_consen 303 LAIHLLLMLILGKLFKID 320 (378)
T ss_pred HHHHHHHHHHHHHHHCCC
Confidence 445667777778766543
No 91
>COG4721 ABC-type cobalt transport system, predicted permease component [Inorganic ion transport and metabolism]
Probab=31.50 E-value=2.2e+02 Score=25.14 Aligned_cols=58 Identities=22% Similarity=0.298 Sum_probs=31.6
Q ss_pred HHHHHHhhhcccCChH--HHHHHHHHH---HHHH--HHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 024013 150 FVAVYAGLEILAIPAI--PLTMSAGLL---FGSV--TGTIIVSISGTVAASVAFLIARYFARERI 207 (274)
Q Consensus 150 fvll~i~~~~l~iP~~--~L~iaaG~l---FG~~--~G~l~~~lG~~lGa~i~F~IgR~lGr~~v 207 (274)
|+...+...+++=|+. +-.++++.. .|-. .+++++...--+||=..|.+-|+--+++.
T Consensus 56 ~maavi~~l~IpkpGaAl~~Ev~Aa~ve~ll~sqfgi~tivsgfvQGlgaE~vFa~~kyr~~Sl~ 120 (192)
T COG4721 56 FMAAVIAALFIPKPGAALIGEVLAALVEVLLGSQFGIGTIVSGFVQGLGAEFVFAVTKYRYYSLP 120 (192)
T ss_pred HHHHHHeeeeecCCcHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHhhhhhHHHHHHHHHHhhHH
Confidence 4433333334555653 344444433 3322 25555556666888888988887554443
No 92
>COG2966 Uncharacterized conserved protein [Function unknown]
Probab=31.08 E-value=4.2e+02 Score=24.33 Aligned_cols=36 Identities=11% Similarity=0.089 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 024013 175 FGSVTGTIIVSISGTVAASVAFLIARYFARERILKL 210 (274)
Q Consensus 175 FG~~~G~l~~~lG~~lGa~i~F~IgR~lGr~~v~~~ 210 (274)
.|.|.-.+.+++++.++..+.++++|+.-.+.....
T Consensus 144 gG~w~d~~iaf~~~~~~~~~~~~l~r~~~~~~~~~~ 179 (250)
T COG2966 144 GGGWLDFLIAFFAGLLGFLLRQYLSRKGNPDFFFEV 179 (250)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHH
Confidence 368888888888888888999888876554444333
No 93
>COG1280 RhtB Putative threonine efflux protein [Amino acid transport and metabolism]
Probab=30.75 E-value=2.3e+02 Score=24.85 Aligned_cols=32 Identities=22% Similarity=0.186 Sum_probs=17.5
Q ss_pred HHHHHHHhhhcccCChHHHHHHHHHHHHHHHH
Q 024013 149 LFVAVYAGLEILAIPAIPLTMSAGLLFGSVTG 180 (274)
Q Consensus 149 ifvll~i~~~~l~iP~~~L~iaaG~lFG~~~G 180 (274)
.|++...+..+.|=|...+.+..|.-.|...|
T Consensus 8 ~~~~~~~~~~~~PGP~~~~v~~~~~~~G~~~g 39 (208)
T COG1280 8 AFLLAALVLAATPGPDNLLVLARSLSRGRRAG 39 (208)
T ss_pred HHHHHHHHHhcCCCccHHHHHHHHHHhcHHHH
Confidence 34444444444556666677766666655433
No 94
>PRK13735 conjugal transfer mating pair stabilization protein TraG; Provisional
Probab=30.68 E-value=1.6e+02 Score=32.38 Aligned_cols=38 Identities=11% Similarity=0.176 Sum_probs=21.7
Q ss_pred ccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024013 160 LAIPAIPLTMSAGLLFGSVTGTIIVSISGTVAASVAFL 197 (274)
Q Consensus 160 l~iP~~~L~iaaG~lFG~~~G~l~~~lG~~lGa~i~F~ 197 (274)
..+|..-+.++.||+.+++|--++-.+-++|-.++.|+
T Consensus 347 allp~~g~~vLkgY~~~~iwLqlWppLfAIIN~~m~~~ 384 (942)
T PRK13735 347 AVFNKLTLSVLKGYVFALMWLQSWPLLYAILNSAMTFY 384 (942)
T ss_pred HHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35676566677788877755444434444444444444
No 95
>COG4035 Predicted membrane protein [Function unknown]
Probab=30.57 E-value=99 Score=24.56 Aligned_cols=23 Identities=13% Similarity=0.124 Sum_probs=10.4
Q ss_pred HHHHHHHHhhcchHhhhHHhhcc
Q 024013 217 FLAIDKAIGENGFRVVTLLRLSP 239 (274)
Q Consensus 217 l~ri~~~l~r~G~~~V~llRliP 239 (274)
++.+.-.+.--||..++-.-+.|
T Consensus 41 iDp~aL~iaV~GwtiL~ns~~~~ 63 (108)
T COG4035 41 IDPFALAIAVFGWTILINSWMRS 63 (108)
T ss_pred CChHHHHHHHhcceeeeeecccC
Confidence 33444444555664444443333
No 96
>PRK09928 choline transport protein BetT; Provisional
Probab=30.12 E-value=1.3e+02 Score=31.79 Aligned_cols=34 Identities=12% Similarity=0.129 Sum_probs=23.6
Q ss_pred HHHHhHHHHHHHHHHHHHHHHhhccHHHHHHHHH
Q 024013 120 MGYVYKDQINAFLTQFSGFIEGYGPAGYALFVAV 153 (274)
Q Consensus 120 ~~~~~~~~L~~~l~~l~~~i~~~g~~g~lifvll 153 (274)
+...+++...+..+.+.+|+.++--|.+++.+.+
T Consensus 33 ~~~~~p~~a~~~~~~~~~~i~~~fgW~y~l~~~~ 66 (679)
T PRK09928 33 TTILFTDFSNRWINRTLNWVSKTFGWYYLLAATL 66 (679)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 3355678888888999999988655555444333
No 97
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=29.70 E-value=2.2e+02 Score=31.70 Aligned_cols=69 Identities=17% Similarity=0.146 Sum_probs=35.7
Q ss_pred HHHHHHhhccHHHHHHHHHHHhhhcccCChH----HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhHH
Q 024013 135 FSGFIEGYGPAGYALFVAVYAGLEILAIPAI----PLTMSAGLLFGSVTGTIIVSISGT---VAASVAFLIARYFARE 205 (274)
Q Consensus 135 l~~~i~~~g~~g~lifvll~i~~~~l~iP~~----~L~iaaG~lFG~~~G~l~~~lG~~---lGa~i~F~IgR~lGr~ 205 (274)
+.+..++++.|--.+.++.-+..-.+.+|.. +-.+.-|..|.--.|.. ..|.. .++.+.+.++|.+-..
T Consensus 387 ~~~p~e~~~aWHgacLaLAELA~rGlLlps~l~dVvplI~kaL~Yd~~~G~~--s~G~~VRDaAcY~~WAf~Rays~~ 462 (1133)
T KOG1943|consen 387 LFNPAEDDSAWHGACLALAELALRGLLLPSLLEDVVPLILKALHYDVRRGQH--SVGQHVRDAACYVCWAFARAYSPS 462 (1133)
T ss_pred hcCcCCchhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhhhhhhhccc--ccccchHHHHHHHHHHHHhcCChh
Confidence 3344455555544444444444445666743 22233445555544432 45554 3567777788876554
No 98
>PF10797 YhfT: Protein of unknown function; InterPro: IPR019733 This entry contains predicted inner membrane proteins, whose function is unknown.
Probab=29.56 E-value=95 Score=30.72 Aligned_cols=35 Identities=9% Similarity=0.065 Sum_probs=15.0
Q ss_pred CCcCchhHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 024013 93 GLEGDTAVKGSILAGVLLLVVVGGFGTMGYVYKDQI 128 (274)
Q Consensus 93 ~~~~~~~~~~~ll~~v~lv~~v~~l~~~~~~~~~~L 128 (274)
.++.+| +||-|..+.+.-++++...-+.++-.+++
T Consensus 220 ~~rv~R-IkKN~~~L~i~GaLiaa~~sl~i~Ag~pi 254 (420)
T PF10797_consen 220 SERVAR-IKKNLPLLAIMGALIAAATSLHIFAGDPI 254 (420)
T ss_pred HHHHHH-HHhccHHHHHHHHHHHHHhhhhhhcCCch
Confidence 344554 44444444444444443433334333444
No 99
>PF13807 GNVR: G-rich domain on putative tyrosine kinase
Probab=29.52 E-value=82 Score=23.40 Aligned_cols=25 Identities=24% Similarity=0.464 Sum_probs=19.2
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHH
Q 024013 162 IPAIPLTMSAGLLFGSVTGTIIVSI 186 (274)
Q Consensus 162 iP~~~L~iaaG~lFG~~~G~l~~~l 186 (274)
-|-..++++.|.++|...|+.++++
T Consensus 55 ~P~~~lil~l~~~~Gl~lgi~~~~~ 79 (82)
T PF13807_consen 55 SPKRALILALGLFLGLILGIGLAFL 79 (82)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 3557888999999999888876543
No 100
>PF11337 DUF3139: Protein of unknown function (DUF3139); InterPro: IPR021486 This family of proteins with unknown function appears to be restricted to Firmicutes.
Probab=29.23 E-value=1.6e+02 Score=22.12 Aligned_cols=17 Identities=6% Similarity=0.067 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHhhccH
Q 024013 129 NAFLTQFSGFIEGYGPA 145 (274)
Q Consensus 129 ~~~l~~l~~~i~~~g~~ 145 (274)
....+.+.+++++.|+-
T Consensus 34 ~~~~k~i~~yL~e~gy~ 50 (85)
T PF11337_consen 34 HKAEKAIDWYLQEQGYK 50 (85)
T ss_pred HHHHHHHHHHHHHcCCc
Confidence 34446677777776653
No 101
>PRK10599 calcium/sodium:proton antiporter; Provisional
Probab=28.83 E-value=5.6e+02 Score=25.03 Aligned_cols=12 Identities=0% Similarity=0.224 Sum_probs=5.9
Q ss_pred HHHHHHHHhhcc
Q 024013 133 TQFSGFIEGYGP 144 (274)
Q Consensus 133 ~~l~~~i~~~g~ 144 (274)
+.++..+++.|.
T Consensus 243 ~sIe~~v~~~Gl 254 (366)
T PRK10599 243 SPLETLLTSMNA 254 (366)
T ss_pred hhHHHHHHhcCC
Confidence 334445555554
No 102
>PLN02638 cellulose synthase A (UDP-forming), catalytic subunit
Probab=28.63 E-value=93 Score=34.54 Aligned_cols=7 Identities=43% Similarity=0.477 Sum_probs=3.1
Q ss_pred HHHHHHH
Q 024013 191 AASVAFL 197 (274)
Q Consensus 191 Ga~i~F~ 197 (274)
|+.++|.
T Consensus 394 gS~LTf~ 400 (1079)
T PLN02638 394 AAMLTFE 400 (1079)
T ss_pred chHHHHH
Confidence 4444443
No 103
>COG1177 PotC ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport and metabolism]
Probab=27.65 E-value=3.6e+02 Score=25.00 Aligned_cols=87 Identities=16% Similarity=0.138 Sum_probs=57.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HhHHHHHHHhcC----cHHHH--HHHHHH----hhcchHhhhHHhhc
Q 024013 171 AGLLFGSVTGTIIVSISGTVAASVAFLIARY--FARERILKLVEG----NKKFL--AIDKAI----GENGFRVVTLLRLS 238 (274)
Q Consensus 171 aG~lFG~~~G~l~~~lG~~lGa~i~F~IgR~--lGr~~v~~~l~~----~~kl~--ri~~~l----~r~G~~~V~llRli 238 (274)
.+.......|++.+.++..+|-..+|.+.|+ .|+..++....- .+-.- .+--.+ -..|++.++++..+
T Consensus 65 ~a~~~Sl~IA~~s~~~s~~lg~~aA~al~r~~~~g~~~~~~l~~~PlvvP~Iv~gi~ll~~f~~~~~~~~~~~ivlaH~~ 144 (267)
T COG1177 65 SALWNSLLIALLSALLATLLGTLAALALARYRFRGKNLLEGLILLPLVVPDIVTGIALLLLFAALGLPGGFWTIVLAHIV 144 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHhhhcccHHHHHHHHHHHHHHcCCCccHHHHHHHHHH
Confidence 3344455566677777777888888988886 234444443321 01111 111122 25689999999999
Q ss_pred cccchhhhhHhhhccCCCh
Q 024013 239 PLLPFSLGNYLYGLTSVKF 257 (274)
Q Consensus 239 PviP~~vvny~aGls~i~~ 257 (274)
--+|+.++.+.+.+.+++.
T Consensus 145 ~~lP~v~~~v~a~l~~~d~ 163 (267)
T COG1177 145 FALPFVVVVVSARLQGFDR 163 (267)
T ss_pred HHhhHHHHHHHHHHHhCCh
Confidence 8899999999999888876
No 104
>PF03773 DUF318: Predicted permease; InterPro: IPR005524 This family of predicted integral membrane proteins.
Probab=27.33 E-value=5.1e+02 Score=24.06 Aligned_cols=17 Identities=18% Similarity=0.178 Sum_probs=9.1
Q ss_pred HHHHHHHHhhccHHHHH
Q 024013 133 TQFSGFIEGYGPAGYAL 149 (274)
Q Consensus 133 ~~l~~~i~~~g~~g~li 149 (274)
+.+..++.+.++++.++
T Consensus 212 ~~l~~~~g~~~~~~ill 228 (307)
T PF03773_consen 212 EWLSTLLGSNGLLAILL 228 (307)
T ss_pred HHHHHHhhcCchHHHHH
Confidence 44445555566666433
No 105
>PF03596 Cad: Cadmium resistance transporter; InterPro: IPR004676 These proteins are members of the Cadmium Resistance (CadD) Family. To date, this family of proteins has only been found in Gram-positive bacteria. The CadD family includes two close orthologues in two Staphylococcus species that have been reported to function in cadmium resistance, and another staphylococcal protein that has been reported to possibly function in quaternary ammonium ion export.
Probab=27.21 E-value=3e+02 Score=24.32 Aligned_cols=19 Identities=21% Similarity=0.433 Sum_probs=10.1
Q ss_pred HHHHHHHHhhccH-HHHHHH
Q 024013 133 TQFSGFIEGYGPA-GYALFV 151 (274)
Q Consensus 133 ~~l~~~i~~~g~~-g~lifv 151 (274)
..+.+.++.++-+ .+++|+
T Consensus 153 p~i~~~leryg~~l~p~v~I 172 (191)
T PF03596_consen 153 PIIAEFLERYGRWLVPIVYI 172 (191)
T ss_pred hHHHHHHHHhcccHHHHHHH
Confidence 4555666666644 344444
No 106
>KOG1397 consensus Ca2+/H+ antiporter VCX1 and related proteins [Inorganic ion transport and metabolism]
Probab=27.09 E-value=2e+02 Score=28.57 Aligned_cols=6 Identities=0% Similarity=0.473 Sum_probs=2.3
Q ss_pred chhccC
Q 024013 79 NNRIQG 84 (274)
Q Consensus 79 ~~~~~~ 84 (274)
|||+||
T Consensus 274 d~~~s~ 279 (441)
T KOG1397|consen 274 DDEVSN 279 (441)
T ss_pred cccccc
Confidence 344333
No 107
>PF15420 Abhydrolase_9_N: Alpha/beta-hydrolase family N-terminus
Probab=27.00 E-value=4.5e+02 Score=23.39 Aligned_cols=17 Identities=6% Similarity=0.026 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHHH
Q 024013 185 SISGTVAASVAFLIARY 201 (274)
Q Consensus 185 ~lG~~lGa~i~F~IgR~ 201 (274)
.+|..+...+.+.+...
T Consensus 134 ~~~~~~v~~l~~~l~~g 150 (208)
T PF15420_consen 134 VVGVVVVVVLVVALVDG 150 (208)
T ss_pred HHHHHHHHHHHHHHhcc
Confidence 34444444444444443
No 108
>COG3366 Uncharacterized protein conserved in archaea [Function unknown]
Probab=26.75 E-value=5.7e+02 Score=24.48 Aligned_cols=18 Identities=22% Similarity=0.233 Sum_probs=8.5
Q ss_pred ccCChHHHHHHHHHHHHH
Q 024013 160 LAIPAIPLTMSAGLLFGS 177 (274)
Q Consensus 160 l~iP~~~L~iaaG~lFG~ 177 (274)
+++|+..+.++.+.+...
T Consensus 215 L~lp~eav~v~~~~~~~~ 232 (311)
T COG3366 215 LPLPPEAVTVVLTNLANI 232 (311)
T ss_pred cCCCcchHHHHHHHHHHH
Confidence 445555444444444433
No 109
>PRK11463 fxsA phage T7 F exclusion suppressor FxsA; Reviewed
Probab=26.75 E-value=3.9e+02 Score=22.53 Aligned_cols=38 Identities=8% Similarity=0.022 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 024013 166 PLTMSAGLLFGSVTGTIIVSISGTVAASVAFLIARYFA 203 (274)
Q Consensus 166 ~L~iaaG~lFG~~~G~l~~~lG~~lGa~i~F~IgR~lG 203 (274)
.+.+..|-..|.|+.+++..+++.+|..+.-.-|+...
T Consensus 17 ~~~i~v~~~iG~~~tl~lvi~t~~lG~~l~r~~G~~~l 54 (148)
T PRK11463 17 AVFIAVASVIGVGWTLLLVILTSVLGVLLARSQGFKTL 54 (148)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555667788887777777766677666544444433
No 110
>PRK10527 hypothetical protein; Provisional
Probab=26.47 E-value=2.3e+02 Score=23.33 Aligned_cols=27 Identities=22% Similarity=0.305 Sum_probs=16.6
Q ss_pred HHHHHHhhhccc-CChHHHHHHHHHHHH
Q 024013 150 FVAVYAGLEILA-IPAIPLTMSAGLLFG 176 (274)
Q Consensus 150 fvll~i~~~~l~-iP~~~L~iaaG~lFG 176 (274)
++.+-++..++| +|.++..+++.+.|.
T Consensus 13 ~~~LG~iGi~LPlLPTTPFlLLAa~cfa 40 (125)
T PRK10527 13 AVVLGTLGVVLPLLPTTPFILLAAWCFA 40 (125)
T ss_pred HHHHHHHHHhccCCCCcHHHHHHHHHHH
Confidence 333344444444 788888888876664
No 111
>PF06809 NPDC1: Neural proliferation differentiation control-1 protein (NPDC1); InterPro: IPR009635 This family consists of several neural proliferation differentiation control-1 (NPDC1) proteins. NPDC1 plays a role in the control of neural cell proliferation and differentiation. It has been suggested that NPDC1 may be involved in the development of several secretion glands. This family also contains the C-terminal region of the Caenorhabditis elegans protein CAB-1 (Q93249 from SWISSPROT) which is known to interact with AEX-3 [].; GO: 0016021 integral to membrane
Probab=26.19 E-value=44 Score=32.06 Aligned_cols=12 Identities=25% Similarity=0.318 Sum_probs=6.4
Q ss_pred hhhhhhcccccC
Q 024013 47 QTKKQNTLQKST 58 (274)
Q Consensus 47 ~~~~~~~~~~~~ 58 (274)
|.+||+-+...+
T Consensus 268 QHQKQQMiamEk 279 (341)
T PF06809_consen 268 QHQKQQMIAMEK 279 (341)
T ss_pred HHHHHHHHhhcc
Confidence 455665555554
No 112
>PF09819 ABC_cobalt: ABC-type cobalt transport system, permease component; InterPro: IPR017195 This group represents a predicted ABC-type thiamin-related transport system, permease component 1. It is probably part of the ABC transporter complex ykoCDEF that could transport hydroxymethylpyrimidine (HMP) and/or thiamine. It could also transport other HMP-containing products. The complex is composed of two ATP-binding proteins (ykoD), two transmembrane proteins (ykoC and ykoE) and a solute-binding protein (ykoF).
Probab=25.69 E-value=3.8e+02 Score=22.12 Aligned_cols=28 Identities=29% Similarity=0.468 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHH--HHHHHHHHHHHH
Q 024013 174 LFGSVTGTIIVSISGT--VAASVAFLIARY 201 (274)
Q Consensus 174 lFG~~~G~l~~~lG~~--lGa~i~F~IgR~ 201 (274)
++|..+|......|.. +|+=+.|++.||
T Consensus 77 ~~G~~~G~~~ii~gl~QGlg~El~Fa~~~Y 106 (129)
T PF09819_consen 77 LLGSQWGIMTIISGLVQGLGAELGFALFRY 106 (129)
T ss_pred HhcCcchHHHHHHHHHhHHHHHHHHHHHhh
Confidence 3565556543333332 566666776666
No 113
>COG1292 BetT Choline-glycine betaine transporter [Cell envelope biogenesis, outer membrane]
Probab=25.62 E-value=3.1e+02 Score=28.26 Aligned_cols=38 Identities=18% Similarity=0.252 Sum_probs=25.3
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHhhccHHHHHHHHHH
Q 024013 117 FGTMGYVYKDQINAFLTQFSGFIEGYGPAGYALFVAVY 154 (274)
Q Consensus 117 l~~~~~~~~~~L~~~l~~l~~~i~~~g~~g~lifvll~ 154 (274)
+.+++-.++|+.+.+.+.+.+|+.++--|-+++.+.++
T Consensus 25 ~~~~~i~~p~~~~~~~~~~~~~i~~~~GW~yil~~~~~ 62 (537)
T COG1292 25 LVLLGIRFPDQAETVINAIFSWITNNFGWYYILTVLLF 62 (537)
T ss_pred HHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455667788999999999998885555444433333
No 114
>PF07290 DUF1449: Protein of unknown function (DUF1449); InterPro: IPR010840 This family consists of several bacterial proteins of around 210 residues in length. The function of this family is unknown.
Probab=25.30 E-value=4.1e+02 Score=23.70 Aligned_cols=47 Identities=17% Similarity=0.384 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcCcHH-HHHHHHHHhhcc
Q 024013 181 TIIVSISGTVAASVAFLIARYFARERILKLVEGNKK-FLAIDKAIGENG 228 (274)
Q Consensus 181 ~l~~~lG~~lGa~i~F~IgR~lGr~~v~~~l~~~~k-l~ri~~~l~r~G 228 (274)
.+-.++...++-.++.++.|+.++. +.+.+.+++. -.+.++.+++.|
T Consensus 94 ~lp~~l~~~~al~~sl~~~~~~~~~-la~ilp~~essavs~~~LiGr~a 141 (202)
T PF07290_consen 94 PLPAWLAAPVALFLSLFFTRYLGRP-LARILPKDESSAVSSDDLIGRVA 141 (202)
T ss_pred chHHHHHHHHHHHHHHHHHHHHhHH-HHHhcCCCcccccchhhcCcceE
Confidence 3344455556666778888888875 4455444322 123344444444
No 115
>PF04186 FxsA: FxsA cytoplasmic membrane protein ; InterPro: IPR007313 This is a bacterial family of cytoplasmic membrane proteins. It includes two transmembrane regions. The molecular function of FxsA is unknown, but in Escherichia coli its overexpression has been shown to alleviate the exclusion of phage T7 in those cells with an F plasmid.; GO: 0016020 membrane
Probab=25.20 E-value=3.7e+02 Score=21.74 Aligned_cols=37 Identities=11% Similarity=0.096 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024013 166 PLTMSAGLLFGSVTGTIIVSISGTVAASVAFLIARYF 202 (274)
Q Consensus 166 ~L~iaaG~lFG~~~G~l~~~lG~~lGa~i~F~IgR~l 202 (274)
.+.+..|-.+|.++.+++..+++.+|..+.-.-++..
T Consensus 13 ~~~i~v~~~iG~~~tll~vi~t~~lG~~llr~~g~~~ 49 (119)
T PF04186_consen 13 AVLILVGSWIGFLWTLLLVILTAVLGIWLLRRQGRRA 49 (119)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555566677777776665555555555544444433
No 116
>PF05072 Herpes_UL43: Herpesvirus UL43 protein; InterPro: IPR007764 UL43 genes are expressed with true-late (gamma2) kinetics and have been identified as a virion tegument component []. Studies suggest that the N-terminal sequences target UL43 to protein aggregates and that C-terminal sequences are important for incorporation into particles.; GO: 0016020 membrane, 0019033 viral tegument
Probab=24.52 E-value=5.6e+02 Score=25.14 Aligned_cols=10 Identities=30% Similarity=0.378 Sum_probs=6.3
Q ss_pred CCCCcccccc
Q 024013 59 TNAPRSLGWF 68 (274)
Q Consensus 59 ~~~~~~~~~~ 68 (274)
-+.|.+|++.
T Consensus 199 lrt~~dlGr~ 208 (373)
T PF05072_consen 199 LRTPTDLGRG 208 (373)
T ss_pred cCCcCCCCCc
Confidence 4567777663
No 117
>PF10031 DUF2273: Small integral membrane protein (DUF2273); InterPro: IPR018730 Members of this family of hypothetical bacterial proteins have no known function.
Probab=24.51 E-value=2.5e+02 Score=19.51 Aligned_cols=24 Identities=25% Similarity=0.503 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024013 174 LFGSVTGTIIVSISGTVAASVAFLIARYF 202 (274)
Q Consensus 174 lFG~~~G~l~~~lG~~lGa~i~F~IgR~l 202 (274)
.+|+|...++.. -+.++|.+|+++
T Consensus 26 ~~GF~~tl~i~~-----~~~iG~~iG~~~ 49 (51)
T PF10031_consen 26 TFGFWKTLFILL-----FAAIGYYIGKYL 49 (51)
T ss_pred HHHHHHHHHHHH-----HHHHHHHHHHHh
Confidence 466655444322 244555666553
No 118
>TIGR00930 2a30 K-Cl cotransporter.
Probab=24.38 E-value=42 Score=36.69 Aligned_cols=114 Identities=17% Similarity=0.179 Sum_probs=0.0
Q ss_pred cCCCCCCCCCcchhccCCCCCCCCCCCcCchhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhccHHH
Q 024013 68 FFNPKGDDDDNNNRIQGNGMDAESEGLEGDTAVKGSILAGVLLLVVVGGFGTMGYVYKDQINAFLTQFSGFIEGYGPAGY 147 (274)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~v~lv~~v~~l~~~~~~~~~~L~~~l~~l~~~i~~~g~~g~ 147 (274)
..++..+..+.+++.++.+++++.+.++.+.....+-+.....|.+-... .++|.
T Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~GV~~~~~~-------------------------nIiGv 95 (953)
T TIGR00930 41 LLGPLADYTNNGQGMKEHEEAEDAEGTKEKPPAGAVKFGWVMGVLVPCLL-------------------------NIWGV 95 (953)
T ss_pred ccCccccCcccccccCCcccccccccccCCCCCCCcccceeEeeeHhhhH-------------------------hHhee
Q ss_pred HHHHHHHHhhhcccCChHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhHHH
Q 024013 148 ALFVAVYAGLEILAIPAIPLTMSAGLLFGSVTGTIIVSISGT---VAASVAFLIARYFARER 206 (274)
Q Consensus 148 lifvll~i~~~~l~iP~~~L~iaaG~lFG~~~G~l~~~lG~~---lGa~i~F~IgR~lGr~~ 206 (274)
.+|+-.-.+..-..+..+++.++.+.+.-...++.++.+++. -++-.-|++.|.+|++.
T Consensus 96 ~iFlr~~~Vvg~aG~~~sll~~~la~~vtlltaLS~seiaTng~p~aGG~Y~yisralGp~~ 157 (953)
T TIGR00930 96 ILFLRLSWIVGQAGIGLSLLIILLCCCVTTITGLSMSAIATNGVVKGGGAYYLISRSLGPEF 157 (953)
T ss_pred eeeeeHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHhCcHH
No 119
>PF12072 DUF3552: Domain of unknown function (DUF3552); InterPro: IPR022711 This presumed domain is functionally uncharacterised. This domain is found in bacteria, archaea and eukaryotes. This domain is about 200 amino acids in length. This domain is found associated with PF00013 from PFAM, PF01966 from PFAM. This domain has a single completely conserved residue A that may be functionally important. ; GO: 0008663 2',3'-cyclic-nucleotide 2'-phosphodiesterase activity
Probab=24.18 E-value=1.4e+02 Score=26.25 Aligned_cols=26 Identities=19% Similarity=0.474 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHH
Q 024013 182 IIVSISGTVAASVAFLIARYFARERI 207 (274)
Q Consensus 182 l~~~lG~~lGa~i~F~IgR~lGr~~v 207 (274)
+++.++..+|..++|++.++..+..+
T Consensus 4 i~~i~~~~vG~~~G~~~~~~~~~~~~ 29 (201)
T PF12072_consen 4 IIAIVALIVGIGIGYLVRKKINRKKL 29 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666777777777777665443
No 120
>PF15383 TMEM237: Transmembrane protein 237
Probab=23.96 E-value=3.5e+02 Score=25.04 Aligned_cols=45 Identities=18% Similarity=0.409 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHHHhhccHHHHH
Q 024013 105 LAGVLLLVVVGGFGTMGYVYKDQINAF-LTQFSGFIEGYGPAGYAL 149 (274)
Q Consensus 105 l~~v~lv~~v~~l~~~~~~~~~~L~~~-l~~l~~~i~~~g~~g~li 149 (274)
......=+++||++++..+.--.+... ...+.++++.|..++..+
T Consensus 96 ~~~~~~hG~LAG~al~h~i~v~~l~~~~~~~~~~lL~~Y~~la~p~ 141 (253)
T PF15383_consen 96 VIGLFCHGFLAGFALWHIIVVYVLAGYQLSTVSNLLSQYSPLAYPA 141 (253)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHH
Confidence 333444567888877754332222211 123446777776665443
No 121
>PF01773 Nucleos_tra2_N: Na+ dependent nucleoside transporter N-terminus; InterPro: IPR002668 This entry contains nucleoside transport proteins. S282_RAT is a purine-specific Na+-nucleoside cotransporter localised to the bile canalicular membrane []. S281_RAT is a a Na+-dependent nucleoside transporter selective for pyrimidine nucleosides and adenosine it also transports the anti-viral nucleoside analogues AZT and ddC [].; GO: 0005415 nucleoside:sodium symporter activity, 0006810 transport, 0016020 membrane; PDB: 3TIJ_A.
Probab=23.94 E-value=3.1e+02 Score=20.41 Aligned_cols=37 Identities=14% Similarity=-0.050 Sum_probs=16.3
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 024013 96 GDTAVKGSILAGVLLLVVVGGFGTMGYVYKDQINAFL 132 (274)
Q Consensus 96 ~~~~~~~~ll~~v~lv~~v~~l~~~~~~~~~~L~~~l 132 (274)
.+++++.+.+...+.+-++.++..+.+-....+.++.
T Consensus 16 ~rk~I~wr~V~~gl~lQ~~la~~vl~~~~G~~~~~~i 52 (75)
T PF01773_consen 16 NRKAIKWRTVIWGLGLQFVLALFVLKTPAGRDAFEWI 52 (75)
T ss_dssp -GGG--HHHHHHHHHHHHHHHHHHHTSHHHHHHHHHH
T ss_pred CCCcCChHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 3445555556666655555555444333333333333
No 122
>PHA02975 hypothetical protein; Provisional
Probab=23.91 E-value=70 Score=23.86 Aligned_cols=16 Identities=0% Similarity=0.212 Sum_probs=6.7
Q ss_pred hHHHHHHHHHHHHHHH
Q 024013 99 AVKGSILAGVLLLVVV 114 (274)
Q Consensus 99 ~~~~~ll~~v~lv~~v 114 (274)
..+.+++..+..++++
T Consensus 42 ~~~~~~ii~i~~v~~~ 57 (69)
T PHA02975 42 SLSIILIIFIIFITCI 57 (69)
T ss_pred chHHHHHHHHHHHHHH
Confidence 3444444443333333
No 123
>PF12811 BaxI_1: Bax inhibitor 1 like ; InterPro: IPR010539 Bax inhibitor-1 (BI1) family contains six known genes in human. Some members of BI1 family have been proved to play important roles in cell death [, ].
Probab=23.74 E-value=6.1e+02 Score=23.77 Aligned_cols=24 Identities=17% Similarity=0.223 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 024013 180 GTIIVSISGTVAASVAFLIARYFA 203 (274)
Q Consensus 180 G~l~~~lG~~lGa~i~F~IgR~lG 203 (274)
|+..-.+..+++...+-++..+.|
T Consensus 145 GIv~qAvl~T~~vf~~ml~lYk~g 168 (274)
T PF12811_consen 145 GIVFQAVLGTFGVFAVMLALYKTG 168 (274)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHhC
Confidence 444444555555555555555444
No 124
>COG5129 MAK16 Nuclear protein with HMG-like acidic region [General function prediction only]
Probab=23.67 E-value=38 Score=31.04 Aligned_cols=11 Identities=9% Similarity=0.356 Sum_probs=7.7
Q ss_pred cccCCCCCCCC
Q 024013 66 GWFFNPKGDDD 76 (274)
Q Consensus 66 ~~~~~~~~~~~ 76 (274)
+|++...+|+.
T Consensus 233 kWl~~~~~~~t 243 (303)
T COG5129 233 KWLGSDQSMET 243 (303)
T ss_pred HHhccccchhc
Confidence 67777777763
No 125
>PF10399 UCR_Fe-S_N: Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal; InterPro: IPR019470 This entry represents the TAT-signal region found in the iron-sulphur subunit of Ubiquinol-cytochrome C reductase (also known as the cytochrome bc1 complex). This enzymex is an oligomeric membrane protein complex that is a component of respiratory and photosynthetic electron transfer chains. It couples the transfer of electrons from ubiquinol to cytochrome c with the generation of a protein gradient across the membrane []. This entry is associated with IPR017941 from INTERPRO, IPR004192 from INTERPRO and IPR015248 from INTERPRO. ; GO: 0008121 ubiquinol-cytochrome-c reductase activity, 0055114 oxidation-reduction process; PDB: 1ZRT_R 2QJY_R 2FYN_L 2QJK_O 2QJP_I 2YIU_F.
Probab=23.53 E-value=1.3e+02 Score=19.97 Aligned_cols=19 Identities=11% Similarity=0.104 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 024013 101 KGSILAGVLLLVVVGGFGT 119 (274)
Q Consensus 101 ~~~ll~~v~lv~~v~~l~~ 119 (274)
|+.|......++.+|+.++
T Consensus 12 RdFL~~at~~~gavG~~~~ 30 (41)
T PF10399_consen 12 RDFLTIATSAVGAVGAAAA 30 (41)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4555566666666665543
No 126
>COG1300 SpoIIM Uncharacterized membrane protein [Function unknown]
Probab=23.37 E-value=2.6e+02 Score=25.00 Aligned_cols=24 Identities=25% Similarity=0.483 Sum_probs=14.2
Q ss_pred hcccCChHHHHHHHHHHHHHHHHH
Q 024013 158 EILAIPAIPLTMSAGLLFGSVTGT 181 (274)
Q Consensus 158 ~~l~iP~~~L~iaaG~lFG~~~G~ 181 (274)
..+.+|...+.+..|++-|...+.
T Consensus 92 ~~lGl~~il~l~fNG~ivG~~~~~ 115 (207)
T COG1300 92 LTLGLPTILVLLFNGFIVGFFVGL 115 (207)
T ss_pred HHHhhHHHHHHHHhhHHHHHHHHH
Confidence 345667666666667776654433
No 127
>COG5346 Predicted membrane protein [Function unknown]
Probab=23.33 E-value=1.7e+02 Score=24.47 Aligned_cols=26 Identities=31% Similarity=0.374 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHH
Q 024013 176 GSVTGTIIVSISGTVA-ASVAFLIARY 201 (274)
Q Consensus 176 G~~~G~l~~~lG~~lG-a~i~F~IgR~ 201 (274)
..|..++.+..|++.+ -+++|.+||.
T Consensus 104 si~~~tla~~~~Gtv~alAlaFv~~~S 130 (136)
T COG5346 104 SIFPKTLASLAGGTVFALALAFVIGRS 130 (136)
T ss_pred HHHHHHHHHHccchHHHHHHHHHHhhh
Confidence 3344444444444433 3345666664
No 128
>COG3030 FxsA Protein affecting phage T7 exclusion by the F plasmid [General function prediction only]
Probab=23.30 E-value=3.3e+02 Score=23.52 Aligned_cols=38 Identities=16% Similarity=0.201 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 024013 166 PLTMSAGLLFGSVTGTIIVSISGTVAASVAFLIARYFARERI 207 (274)
Q Consensus 166 ~L~iaaG~lFG~~~G~l~~~lG~~lGa~i~F~IgR~lGr~~v 207 (274)
.+.+..|..-|.++..++..+++++| .++.|.-|...+
T Consensus 18 a~fI~Vg~~IG~~~Tl~Lvilt~~~G----~~l~r~qG~~~l 55 (158)
T COG3030 18 ALFIWVGSVIGVGWTLLLVILTSVLG----ALLLRVQGFGTL 55 (158)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHH----HHHHHHHHHHHH
Confidence 34444555666666666655554444 455565555433
No 129
>PF04186 FxsA: FxsA cytoplasmic membrane protein ; InterPro: IPR007313 This is a bacterial family of cytoplasmic membrane proteins. It includes two transmembrane regions. The molecular function of FxsA is unknown, but in Escherichia coli its overexpression has been shown to alleviate the exclusion of phage T7 in those cells with an F plasmid.; GO: 0016020 membrane
Probab=23.21 E-value=3e+02 Score=22.23 Aligned_cols=46 Identities=20% Similarity=0.228 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 024013 165 IPLTMSAGLLFGSVTGTIIVSISGTVAASVAFLIARYFARERILKL 210 (274)
Q Consensus 165 ~~L~iaaG~lFG~~~G~l~~~lG~~lGa~i~F~IgR~lGr~~v~~~ 210 (274)
.++.++.=+..|-+.|+....+-..+++.++.++.|.-|+..+++.
T Consensus 8 ~~~Ei~~~i~v~~~iG~~~tll~vi~t~~lG~~llr~~g~~~~~~~ 53 (119)
T PF04186_consen 8 PILEIAVLILVGSWIGFLWTLLLVILTAVLGIWLLRRQGRRALRRL 53 (119)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677777777899999988888888999999999999998876665
No 130
>PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function. The region concerned is approximately 280 residues long.
Probab=22.92 E-value=1.3e+02 Score=27.72 Aligned_cols=8 Identities=25% Similarity=0.692 Sum_probs=3.2
Q ss_pred HHHHHHHH
Q 024013 174 LFGSVTGT 181 (274)
Q Consensus 174 lFG~~~G~ 181 (274)
+|....|+
T Consensus 223 vFs~f~GI 230 (254)
T PF07857_consen 223 VFSHFSGI 230 (254)
T ss_pred eHHHHhhH
Confidence 34443333
No 131
>KOG1109 consensus Vacuole membrane protein VMP1 [General function prediction only]
Probab=22.87 E-value=31 Score=34.00 Aligned_cols=86 Identities=15% Similarity=0.147 Sum_probs=58.2
Q ss_pred HHHHHHHHHHHHHHHHHHhH-------HHHHHHhcC--------cHHHHH----HHHHHhhcchHhhhHHhhccccchhh
Q 024013 185 SISGTVAASVAFLIARYFAR-------ERILKLVEG--------NKKFLA----IDKAIGENGFRVVTLLRLSPLLPFSL 245 (274)
Q Consensus 185 ~lG~~lGa~i~F~IgR~lGr-------~~v~~~l~~--------~~kl~r----i~~~l~r~G~~~V~llRliPviP~~v 245 (274)
-.|.++|-...|+++|.--- +.+...... .++.++ +++.+++-||..+++.--+|--=|++
T Consensus 216 g~gtalgElppyFmaraarlsg~~p~dee~~ef~~g~~~d~e~~~~r~~r~k~wv~~~v~~lgffgIli~aSIpnPlfdl 295 (440)
T KOG1109|consen 216 GAGTALGELPPYFMARAARLSGVEPDDEEYTEFEEGLNWDAEIALSRVHRAKSWVENQVQRLGFFGILICASIPNPLFDL 295 (440)
T ss_pred ccccccccCchHHHHHHHHhcCCCCcHHHhhhhhhhhhhhHHHHhhHHHHhHHHHHHHhhhcccceeEEEecCCCcchhh
Confidence 56778999999999996310 111110000 022333 34444556888888877777444889
Q ss_pred hhHhhhccCCChhhHHHHHhhhccc
Q 024013 246 GNYLYGLTSVKFVPYVLGRYDYYPS 270 (274)
Q Consensus 246 vny~aGls~i~~~~Fll~tllGiP~ 270 (274)
....+|..-+||+.|+.+|++|...
T Consensus 296 aGitcghflvpfw~ffGaTLigKai 320 (440)
T KOG1109|consen 296 AGITCGHFLVPFWTFFGATLIGKAI 320 (440)
T ss_pred cccccccccchHHHHhhHHHHHHHH
Confidence 9999999999999999999999643
No 132
>COG4064 MtrG Tetrahydromethanopterin S-methyltransferase, subunit G [Coenzyme metabolism]
Probab=22.68 E-value=1.6e+02 Score=22.18 Aligned_cols=23 Identities=30% Similarity=0.515 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 024013 171 AGLLFGSVTGTIIVSISGTVAAS 193 (274)
Q Consensus 171 aG~lFG~~~G~l~~~lG~~lGa~ 193 (274)
.|.+||.+.|.+++++-..+++.
T Consensus 50 IGILYGlVIGlil~~i~~~l~~~ 72 (75)
T COG4064 50 IGILYGLVIGLILCMIYILLGVA 72 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 46677887787777666665554
No 133
>KOG0485 consensus Transcription factor NKX-5.1/HMX1, contains HOX domain [Transcription]
Probab=22.56 E-value=6.1e+02 Score=23.34 Aligned_cols=26 Identities=23% Similarity=0.186 Sum_probs=17.3
Q ss_pred cccccccccc--------ccCCCchhhhhhhhhc
Q 024013 28 HSFKPHRRFH--------FVKPCSSLKQTKKQNT 53 (274)
Q Consensus 28 ~~~~~~~~~~--------~~~~~~~~~~~~~~~~ 53 (274)
.+-+.|++.| -+-|.||.+|.+...+
T Consensus 11 ~sg~~~p~~hl~Gg~gg~~~~pds~~~qs~~~gE 44 (268)
T KOG0485|consen 11 VSGISSPYIHLIGGNGGVRLLPDSSIEQSDEKGE 44 (268)
T ss_pred ccccccCcceeecCCCceeecCCcchhccccchh
Confidence 3444566677 5789999888665444
No 134
>COG3493 CitS Na+/citrate symporter [Energy production and conversion]
Probab=22.12 E-value=7.8e+02 Score=24.57 Aligned_cols=25 Identities=12% Similarity=0.130 Sum_probs=13.5
Q ss_pred HHHHHHHHHH-HHHHHHHHHhHHHHH
Q 024013 184 VSISGTVAAS-VAFLIARYFARERIL 208 (274)
Q Consensus 184 ~~lG~~lGa~-i~F~IgR~lGr~~v~ 208 (274)
..++.++|+. .+|+.||+++--.++
T Consensus 357 i~~~vVl~~i~~~~f~grl~~~YPVE 382 (438)
T COG3493 357 IALSVVLGAILGGAFVGRLMGFYPVE 382 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCchH
Confidence 3444454443 347778877643343
No 135
>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional
Probab=22.04 E-value=1.4e+02 Score=27.59 Aligned_cols=17 Identities=29% Similarity=0.503 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHh
Q 024013 187 SGTVAASVAFLIARYFA 203 (274)
Q Consensus 187 G~~lGa~i~F~IgR~lG 203 (274)
|+.+|+++++++|..+-
T Consensus 17 ~g~~Ga~~G~~~Gh~~d 33 (267)
T PRK09430 17 GGFFGALLGLLIGHMFD 33 (267)
T ss_pred hhHHHHHHHHHHHhHHh
Confidence 45556666666666553
No 136
>PRK13855 type IV secretion system protein VirB10; Provisional
Probab=21.93 E-value=1.2e+02 Score=29.82 Aligned_cols=17 Identities=12% Similarity=0.124 Sum_probs=8.6
Q ss_pred hHHHHHHHHHHHHHHHH
Q 024013 99 AVKGSILAGVLLLVVVG 115 (274)
Q Consensus 99 ~~~~~ll~~v~lv~~v~ 115 (274)
+..++++.+++++++++
T Consensus 28 ~~~~~~~v~~~~~~~~~ 44 (376)
T PRK13855 28 SGSQKLIVAGLVLALSL 44 (376)
T ss_pred ccchhhhHHHHHHHHHH
Confidence 44455555555555544
No 137
>PF03613 EIID-AGA: PTS system mannose/fructose/sorbose family IID component; InterPro: IPR004704 The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS) [, ] is a major carbohydrate transport system in bacteria. The PTS catalyses the phosphorylation of incoming sugar substrates and coupled with translocation across the cell membrane, makes the PTS a link between the uptake and metabolism of sugars. The general mechanism of the PTS is the following: a phosphoryl group from phosphoenolpyruvate (PEP) is transferred via a signal transduction pathway, to enzyme I (EI) which in turn transfers it to a phosphoryl carrier, the histidine protein (HPr). Phospho-HPr then transfers the phosphoryl group to a sugar-specific permease, a membrane-bound complex known as enzyme 2 (EII), which transports the sugar to the cell. EII consists of at least three structurally distinct domains IIA, IIB and IIC []. These can either be fused together in a single polypeptide chain or exist as two or three interactive chains, formerly called enzymes II (EII) and III (EIII). The first domain (IIA or EIIA) carries the first permease-specific phosphorylation site, a histidine which is phosphorylated by phospho-HPr. The second domain (IIB or EIIB) is phosphorylated by phospho-IIA on a cysteinyl or histidyl residue, depending on the sugar transported. Finally, the phosphoryl group is transferred from the IIB domain to the sugar substrate concomitantly with the sugar uptake processed by the IIC domain. This third domain (IIC or EIIC) forms the translocation channel and the specific substrate-binding site. An additional transmembrane domain IID, homologous to IIC, can be found in some PTSs, e.g. for mannose [, , , ]. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Man family is unique in several respects among PTS permease families. It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of Escherichia coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine,N-acetylglucosamine, and other sugars. Other members of this can transport sorbose, fructose and N-acetylglucosamine. This family is specific for the IID subunits of this family of PTS transporters.; GO: 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0016021 integral to membrane
Probab=21.88 E-value=2.9e+02 Score=25.62 Aligned_cols=51 Identities=16% Similarity=0.195 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcCcHHHHHHHHHHhh
Q 024013 174 LFGSVTGTIIVSISGTVAASVAFLIARYFARERILKLVEGNKKFLAIDKAIGE 226 (274)
Q Consensus 174 lFG~~~G~l~~~lG~~lGa~i~F~IgR~lGr~~v~~~l~~~~kl~ri~~~l~r 226 (274)
.+|++.-+++..+-...-....|..|...|.+.+.+. ++ ..++++.+...=
T Consensus 132 ~lGpil~~~~~~~~~~~~r~~~~~~GY~~G~~~i~~l-~~-~~~~~i~~~asi 182 (264)
T PF03613_consen 132 ILGPILFLLLYNIIHFFIRYFGFFLGYKLGTSFITKL-QS-GLLQKITEAASI 182 (264)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-Hh-hHHHHHHHHHHH
Confidence 3444443333333334456666777888888888777 42 466666555443
No 138
>PRK08455 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=21.66 E-value=69 Score=28.02 Aligned_cols=12 Identities=0% Similarity=-0.125 Sum_probs=5.6
Q ss_pred HHHHHHHHhhcc
Q 024013 217 FLAIDKAIGENG 228 (274)
Q Consensus 217 l~ri~~~l~r~G 228 (274)
.+++++.+.+..
T Consensus 159 ~~~iN~~L~~g~ 170 (182)
T PRK08455 159 VGKLNEFLIDGF 170 (182)
T ss_pred HHHHHHHhccCc
Confidence 344555554433
No 139
>PRK11463 fxsA phage T7 F exclusion suppressor FxsA; Reviewed
Probab=21.65 E-value=3.1e+02 Score=23.14 Aligned_cols=46 Identities=15% Similarity=0.143 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 024013 165 IPLTMSAGLLFGSVTGTIIVSISGTVAASVAFLIARYFARERILKL 210 (274)
Q Consensus 165 ~~L~iaaG~lFG~~~G~l~~~lG~~lGa~i~F~IgR~lGr~~v~~~ 210 (274)
.++.++.=+..|-+.|+....+-..++++++.++.|.-|+..+++.
T Consensus 12 ~~iEi~~~i~v~~~iG~~~tl~lvi~t~~lG~~l~r~~G~~~l~~~ 57 (148)
T PRK11463 12 PLIEIAVFIAVASVIGVGWTLLLVILTSVLGVLLARSQGFKTLLRA 57 (148)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4778888788999999988777778899999999999998777654
No 140
>PRK03072 heat shock protein HtpX; Provisional
Probab=21.64 E-value=3.2e+02 Score=25.41 Aligned_cols=33 Identities=21% Similarity=0.254 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024013 169 MSAGLLFGSVTGTIIVSISGTVAASVAFLIARYF 202 (274)
Q Consensus 169 iaaG~lFG~~~G~l~~~lG~~lGa~i~F~IgR~l 202 (274)
++.|+++| ..|.++..+-+.+...+.|+.+.+.
T Consensus 22 ~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~s~~~ 54 (288)
T PRK03072 22 VFIGALFG-RTGLGIAVLIAVGMNAYVYWNSDKL 54 (288)
T ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 33455554 2344444444445566666666554
No 141
>PF14158 YndJ: YndJ-like protein
Probab=21.62 E-value=6.7e+02 Score=23.44 Aligned_cols=21 Identities=19% Similarity=0.292 Sum_probs=15.8
Q ss_pred ccCChHHHHHHHHHHHHHHHH
Q 024013 160 LAIPAIPLTMSAGLLFGSVTG 180 (274)
Q Consensus 160 l~iP~~~L~iaaG~lFG~~~G 180 (274)
..+|..+++++.|+.++.+..
T Consensus 165 ~~V~~gp~lVaiGi~~s~~~e 185 (265)
T PF14158_consen 165 WSVLLGPLLVAIGITFSRWLE 185 (265)
T ss_pred hheehhHHHHHHHHHHHHHHH
Confidence 357777777889988887653
No 142
>PF09451 ATG27: Autophagy-related protein 27; InterPro: IPR018939 Autophagy is a degradative transport pathway that delivers cytosolic proteins to the lysosome (vacuole) [] and is induced by starvation []. Cytosolic proteins appear inside the vacuole enclosed in autophagic vesicles. Autophagy significantly differs from other transport pathways by using double membrane layered transport intermediates, called autophagosomes [, ]. The breakdown of vesicular transport intermediates is a unique feature of autophagy []. Autophagy can also function in the elimination of invading bacteria and antigens []. There are more than 25 AuTophaGy-related (ATG) genes that are essential for autophagy, although it is still not known how the autophagosome is made. Atg9 is a potential membrane carrier to deliver lipids that are used to form the vesicle. Atg27 is another transmembrane protein, and is a cycling protein []. It acts as an effector of VPS34 phosphatidylinositol 3-phosphate kinase signalling and regulates the cytoplasm to vacuole transport (Cvt) vesicle formation. It is also required for autophagy-dependent cycling of ATG9.
Probab=21.37 E-value=1.6e+02 Score=27.03 Aligned_cols=15 Identities=20% Similarity=0.235 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHHH
Q 024013 103 SILAGVLLLVVVGGF 117 (274)
Q Consensus 103 ~ll~~v~lv~~v~~l 117 (274)
.|+.+++++++++.+
T Consensus 204 ~wl~i~~~l~~~~Y~ 218 (268)
T PF09451_consen 204 TWLFIILFLFLAAYL 218 (268)
T ss_pred HHHHHHHHHHHHHHh
Confidence 444555544444433
No 143
>PF03672 UPF0154: Uncharacterised protein family (UPF0154); InterPro: IPR005359 The proteins in this entry are functionally uncharacterised.
Probab=21.37 E-value=2.8e+02 Score=20.38 Aligned_cols=16 Identities=25% Similarity=0.191 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHH
Q 024013 105 LAGVLLLVVVGGFGTM 120 (274)
Q Consensus 105 l~~v~lv~~v~~l~~~ 120 (274)
+.+++++++++|+.+.
T Consensus 3 iilali~G~~~Gff~a 18 (64)
T PF03672_consen 3 IILALIVGAVIGFFIA 18 (64)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4455555655555443
No 144
>COG4956 Integral membrane protein (PIN domain superfamily) [General function prediction only]
Probab=21.24 E-value=4.5e+02 Score=25.49 Aligned_cols=63 Identities=14% Similarity=0.233 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHH-HHHHHHHH-------------HHHHHHHHHHHHHHhHHHHHHHhcCcHHHHHHHHHHhhcchHh
Q 024013 166 PLTMSAGLLFGSVTG-TIIVSISG-------------TVAASVAFLIARYFARERILKLVEGNKKFLAIDKAIGENGFRV 231 (274)
Q Consensus 166 ~L~iaaG~lFG~~~G-~l~~~lG~-------------~lGa~i~F~IgR~lGr~~v~~~l~~~~kl~ri~~~l~r~G~~~ 231 (274)
++.++.|...|+... -++...|. .+||.+.|.++-++++... ..++++++++.|-....
T Consensus 8 l~~~i~g~~lG~~~~p~ll~~~~~~~~~~~~n~~v~~ligai~~~li~~~~~~~~~-------~~~~~le~~i~k~~~~~ 80 (356)
T COG4956 8 LLFIIIGAVLGFAVIPELLADLGIQDTAFLNNEYVDALIGAIIFFLISFWFGKYVL-------NWLKRLEEQIRKLPVTT 80 (356)
T ss_pred HHHHHHHhhhhHhhHHHHHhhcCcccchhhccHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHhcCHHH
Q ss_pred hhHH
Q 024013 232 VTLL 235 (274)
Q Consensus 232 V~ll 235 (274)
+++.
T Consensus 81 ilf~ 84 (356)
T COG4956 81 ILFG 84 (356)
T ss_pred HHHH
No 145
>COG0575 CdsA CDP-diglyceride synthetase [Lipid metabolism]
Probab=21.12 E-value=53 Score=30.11 Aligned_cols=34 Identities=12% Similarity=0.297 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcCcH
Q 024013 182 IIVSISGTVAASVAFLIARYFARERILKLVEGNK 215 (274)
Q Consensus 182 l~~~lG~~lGa~i~F~IgR~lGr~~v~~~l~~~~ 215 (274)
++..++...+.+.+|..||.+|++.+...+..+|
T Consensus 137 l~l~~~vw~~Di~Ayf~Gr~fGk~kl~p~iSP~K 170 (265)
T COG0575 137 LLLFLGVWAGDIGAYFVGRRFGKHKLAPKISPKK 170 (265)
T ss_pred HHHHHHHHHHhhhHHHHHHHcCCCCCCCcCCCCC
Confidence 3346677789999999999999876544444333
No 146
>PF06524 NOA36: NOA36 protein; InterPro: IPR010531 This family consists of several NOA36 proteins which contain 29 highly conserved cysteine residues. The function of this protein is unknown.; GO: 0008270 zinc ion binding, 0005634 nucleus
Probab=21.02 E-value=66 Score=30.18 Aligned_cols=16 Identities=31% Similarity=0.658 Sum_probs=11.6
Q ss_pred cccccCCCCCcccCCC
Q 024013 8 PQYHCHQPPSCFLTSS 23 (274)
Q Consensus 8 ~~~~~~~~~~~~~~~~ 23 (274)
-||.|--+.-|||..-
T Consensus 181 Gq~sCLRCK~cfCddH 196 (314)
T PF06524_consen 181 GQYSCLRCKICFCDDH 196 (314)
T ss_pred cchhhhheeeeehhhh
Confidence 4777878888888643
No 147
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=20.88 E-value=2.1e+02 Score=24.34 Aligned_cols=19 Identities=16% Similarity=0.394 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 024013 172 GLLFGSVTGTIIVSISGTV 190 (274)
Q Consensus 172 G~lFG~~~G~l~~~lG~~l 190 (274)
|.++.+..|....++|..+
T Consensus 34 ~~~~s~~lg~~~lAlg~vL 52 (191)
T PF04156_consen 34 GALISFILGIALLALGVVL 52 (191)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555553
No 148
>TIGR02762 TraL_TIGR type IV conjugative transfer system protein TraL. This protein is part of the type IV secretion system for conjugative plasmid transfer. The function of the TraL protein is unknown.
Probab=20.88 E-value=3.1e+02 Score=21.27 Aligned_cols=33 Identities=21% Similarity=0.199 Sum_probs=18.8
Q ss_pred cCCh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024013 161 AIPA-IPLTMSAGLLFGSVTGTIIVSISGTVAASVA 195 (274)
Q Consensus 161 ~iP~-~~L~iaaG~lFG~~~G~l~~~lG~~lGa~i~ 195 (274)
.+|. +++.++.++..|.+.|.. .+|.++|.+++
T Consensus 17 g~t~DE~i~~~~~~~~Gi~~~~~--l~g~~lg~~~~ 50 (95)
T TIGR02762 17 GLPLDEFLPGATLFGIGILSGKA--LIGLILGAAVM 50 (95)
T ss_pred EeeHHHHHHHHHHHHHHHHHhhH--HHHHHHHHHHH
Confidence 4553 455566666677766644 35555555554
No 149
>KOG3088 consensus Secretory carrier membrane protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=20.86 E-value=7.4e+02 Score=23.66 Aligned_cols=7 Identities=14% Similarity=0.069 Sum_probs=4.2
Q ss_pred hhccCCC
Q 024013 80 NRIQGNG 86 (274)
Q Consensus 80 ~~~~~~~ 86 (274)
||+++|-
T Consensus 117 qD~s~EI 123 (313)
T KOG3088|consen 117 QDISNEI 123 (313)
T ss_pred ccccccc
Confidence 6666555
No 150
>PF12729 4HB_MCP_1: Four helix bundle sensory module for signal transduction; InterPro: IPR024478 This entry represents a four-helix bundle that operates as a ubiquitous sensory module in prokaryotic signal-transduction, which is known as four-helix bundles methyl-accepting chemotaxis protein (4HB_MCP) domain. The 4HB_MCP is always found between two predicted transmembrane helices indicating that it detects only extracellular signals. In many cases the domain is associated with a cytoplasmic HAMP domain suggesting that most proteins carrying the bundle might share the mechanism of transmembrane signalling which is well-characterised in E coli chemoreceptors [].
Probab=20.81 E-value=3.5e+02 Score=21.33 Aligned_cols=31 Identities=26% Similarity=0.234 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 024013 102 GSILAGVLLLVVVGGFGTMGYVYKDQINAFL 132 (274)
Q Consensus 102 ~~ll~~v~lv~~v~~l~~~~~~~~~~L~~~l 132 (274)
|.++.++++++++++++++++.....+.+..
T Consensus 7 KL~~~f~~~~~l~~~~~~~~~~~l~~~~~~~ 37 (181)
T PF12729_consen 7 KLILGFGLIILLLLIVGIVGLYSLSQINQNV 37 (181)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444444434444443333444333
No 151
>PRK03001 M48 family peptidase; Provisional
Probab=20.80 E-value=3.2e+02 Score=25.11 Aligned_cols=34 Identities=12% Similarity=0.222 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024013 169 MSAGLLFGSVTGTIIVSISGTVAASVAFLIARYF 202 (274)
Q Consensus 169 iaaG~lFG~~~G~l~~~lG~~lGa~i~F~IgR~l 202 (274)
++.|+.++-..++++.++...+-..+.|+++-.+
T Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 51 (283)
T PRK03001 18 IVIGGMIGGSQGMLIALLFALGMNFFSYWFSDKM 51 (283)
T ss_pred HHHHHHHhchhhHHHHHHHHHHHHHHHHHHhHHH
Confidence 3344444433344444443444455555555444
No 152
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=20.80 E-value=1.3e+02 Score=24.86 Aligned_cols=10 Identities=20% Similarity=0.354 Sum_probs=6.3
Q ss_pred HHHHHHHHHH
Q 024013 193 SVAFLIARYF 202 (274)
Q Consensus 193 ~i~F~IgR~l 202 (274)
++.|++.|.-
T Consensus 83 li~y~irR~~ 92 (122)
T PF01102_consen 83 LISYCIRRLR 92 (122)
T ss_dssp HHHHHHHHHS
T ss_pred HHHHHHHHHh
Confidence 5677776653
No 153
>PF09771 Tmemb_18A: Transmembrane protein 188; InterPro: IPR019168 The function of this family of transmembrane proteins has not, as yet, been determined.
Probab=20.80 E-value=2.4e+02 Score=23.48 Aligned_cols=13 Identities=8% Similarity=-0.245 Sum_probs=6.2
Q ss_pred HHHHHHHhhccHH
Q 024013 134 QFSGFIEGYGPAG 146 (274)
Q Consensus 134 ~l~~~i~~~g~~g 146 (274)
.+.+.+.+|+.+.
T Consensus 58 ~~~~sL~~H~~Ft 70 (125)
T PF09771_consen 58 SFLDSLWNHPFFT 70 (125)
T ss_pred hHHHHHHhCHhHH
Confidence 4444455555443
No 154
>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]
Probab=20.77 E-value=8.8e+02 Score=24.47 Aligned_cols=12 Identities=33% Similarity=0.440 Sum_probs=7.0
Q ss_pred HHhHHHHHHHHH
Q 024013 122 YVYKDQINAFLT 133 (274)
Q Consensus 122 ~~~~~~L~~~l~ 133 (274)
|.-+-.+++|..
T Consensus 265 YivR~gi~dW~p 276 (448)
T COG2271 265 YVVRYGINDWGP 276 (448)
T ss_pred HHHHHHHhhhHH
Confidence 555556666653
No 155
>PRK10520 rhtB homoserine/homoserine lactone efflux protein; Provisional
Probab=20.69 E-value=5e+02 Score=22.25 Aligned_cols=22 Identities=23% Similarity=0.093 Sum_probs=11.8
Q ss_pred hhhcccCChHHHHHHHHHHHHH
Q 024013 156 GLEILAIPAIPLTMSAGLLFGS 177 (274)
Q Consensus 156 ~~~~l~iP~~~L~iaaG~lFG~ 177 (274)
...+.|=|...+.+..|.-.|.
T Consensus 15 ~~~~sPGP~~~~v~~~~~~~G~ 36 (205)
T PRK10520 15 ILSLSPGSGAINTMSTSISHGY 36 (205)
T ss_pred HHhcCCchhHHHHHHHHHHhhH
Confidence 3334455556666666655543
No 156
>PF12732 YtxH: YtxH-like protein; InterPro: IPR024623 This family of uncharacterised proteins is found in bacteria. Proteins in this family are typically between 100 and 143 amino acids in length. The N-terminal region is the most conserved.
Probab=20.41 E-value=2.2e+02 Score=20.70 Aligned_cols=22 Identities=18% Similarity=0.206 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHhHHH
Q 024013 185 SISGTVAASVAFLIARYFARER 206 (274)
Q Consensus 185 ~lG~~lGa~i~F~IgR~lGr~~ 206 (274)
.+|+++|+.++++++-.-|++.
T Consensus 6 l~Ga~~Ga~~glL~aP~sG~e~ 27 (74)
T PF12732_consen 6 LAGAAAGAAAGLLFAPKSGKET 27 (74)
T ss_pred HHHHHHHHHHHHHhCCCCcHHH
Confidence 5677788888888877777653
No 157
>PF03806 ABG_transport: AbgT putative transporter family; InterPro: IPR004697 The p-aminobenzoyl-glutamate transporter family includes two putative transporters, the AbgT protein of Escherichia coli and MtrF of Neisseria gonorrhoeae. AbgT expression is apparently cryptic in wild type cells, but when present on a high copy number plasmid, or when expressed at higher levels due to mutation, it allows utilization of p-aminobenzoyl-glutamate as a source of p-aminobenzoate for p-aminobenzoate auxotrophs []. p-Aminobenzoate is a constituent of, and a precursor for, the biosynthesis of folic acid. It is not currently known if AbgT is naturally involved in transporting p-aminobenzoyl-glutamate, or if it only becomes involved when under altered regulation. MtrF is an inner membrane protein which, together with the MtrCDE efflux pump, is required for high-level resistance to hydrophobic antimicrobial agents in N. gonorrhoeae []. Its role in this process is not known, but it has been suggested that it may be a component of the efflux pump which is dispensible for basal activity, but required for high-level activity [].
Probab=20.00 E-value=1.1e+02 Score=31.11 Aligned_cols=21 Identities=10% Similarity=0.107 Sum_probs=9.9
Q ss_pred CcCchhHHHHHHHHHHHHHHH
Q 024013 94 LEGDTAVKGSILAGVLLLVVV 114 (274)
Q Consensus 94 ~~~~~~~~~~ll~~v~lv~~v 114 (274)
++.+|.+|...+..++.++++
T Consensus 251 ~~EkkgLr~Agi~~l~~lall 271 (502)
T PF03806_consen 251 PREKKGLRWAGIALLAFLALL 271 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344445555544444444443
Done!