Query 024013
Match_columns 274
No_of_seqs 188 out of 1457
Neff 6.0
Searched_HMMs 29240
Date Mon Mar 25 16:41:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024013.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/024013hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4ezc_A UREA transporter 1; mem 41.8 96 0.0033 29.1 8.6 67 133-203 38-106 (384)
2 3p5n_A RIBU, riboflavin uptake 37.8 48 0.0017 27.5 5.4 30 165-194 48-77 (189)
3 3bbn_U Ribosomal protein S21; 33.8 16 0.00056 31.1 1.7 14 34-47 129-142 (190)
4 2rr3_B OSBP, oxysterol-binding 20.1 56 0.0019 21.4 2.0 16 66-81 3-18 (47)
5 2wsw_A BCCT family betaine/car 19.5 4.9E+02 0.017 25.2 9.4 29 119-147 32-60 (509)
6 3j27_B Matrix protein, small e 13.2 2E+02 0.0068 20.6 3.7 33 122-154 19-51 (75)
7 2lbg_A Major prion protein; co 12.6 1.9E+02 0.0064 16.8 2.7 18 185-202 8-25 (27)
8 2knc_B Integrin beta-3; transm 12.5 4E+02 0.014 19.0 5.2 38 96-133 6-43 (79)
9 1p58_D Envelope protein M; fla 12.4 2.1E+02 0.0072 20.5 3.6 35 122-156 19-53 (75)
10 2ca6_A RAN GTPase-activating p 12.0 62 0.0021 28.7 0.8 24 72-95 339-362 (386)
No 1
>4ezc_A UREA transporter 1; membrane protein, channel, SLC14, structural genomics, PSI-biology, NEW YORK consortium on membrane PROT structure, nycomps; HET: BGC BOG SPL; 2.36A {Bos taurus} PDB: 4ezd_A*
Probab=41.84 E-value=96 Score=29.09 Aligned_cols=67 Identities=15% Similarity=0.146 Sum_probs=36.5
Q ss_pred HHHHHHHHhhccHHHHHHHHHHHhhhcccCC--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 024013 133 TQFSGFIEGYGPAGYALFVAVYAGLEILAIP--AIPLTMSAGLLFGSVTGTIIVSISGTVAASVAFLIARYFA 203 (274)
Q Consensus 133 ~~l~~~i~~~g~~g~lifvll~i~~~~l~iP--~~~L~iaaG~lFG~~~G~l~~~lG~~lGa~i~F~IgR~lG 203 (274)
+.+.+|+++.+...-.+=.++--...+++.. .+-+.++.|..++-++-.+. +.+|++++...++.+|
T Consensus 38 ~~~~~~~~~~~~~~~~i~~~LrG~gQV~f~~n~lsGlliLigl~i~sp~~al~----allG~~vstltA~llg 106 (384)
T 4ezc_A 38 KEFANWLKDKPQALQFVDWVLRGISQVVFVSNPISGILILVGLLVQNPWCALN----GCVGTVVSTLTALLLS 106 (384)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHHHHHGGGTCCCHHHHHHHHHHHHHHCHHHHHH----HHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhcCCcHHHHHHHHhcCceEEEecCCcHHHHHHHHHHHHhhHHHHHH----HHHHHHHHHHHHHHhC
Confidence 5566677776643322222222334455554 45677777777765544344 5555666666666655
No 2
>3p5n_A RIBU, riboflavin uptake protein; transporter, alpha-helical bundle, transport protein; HET: RBF; 3.60A {Staphylococcus aureus}
Probab=37.85 E-value=48 Score=27.48 Aligned_cols=30 Identities=20% Similarity=0.279 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024013 165 IPLTMSAGLLFGSVTGTIIVSISGTVAASV 194 (274)
Q Consensus 165 ~~L~iaaG~lFG~~~G~l~~~lG~~lGa~i 194 (274)
.+..+.+|++||++.|.+...++..++..+
T Consensus 48 ~i~i~l~~~~~Gp~~g~~~~~l~~ll~~l~ 77 (189)
T 3p5n_A 48 DVPSLLATFTFGPVAGIIVALVKNLLNYLF 77 (189)
T ss_dssp GHHHHHHHTTSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 467778888899988888777776665554
No 3
>3bbn_U Ribosomal protein S21; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=33.81 E-value=16 Score=31.06 Aligned_cols=14 Identities=29% Similarity=0.280 Sum_probs=10.0
Q ss_pred ccccccCCCchhhh
Q 024013 34 RRFHFVKPCSSLKQ 47 (274)
Q Consensus 34 ~~~~~~~~~~~~~~ 47 (274)
||.||-+|+---|.
T Consensus 129 rRr~YEKPSeKRKR 142 (190)
T 3bbn_U 129 RRRFFENTQDVRKR 142 (190)
T ss_dssp SCCCTTTTTTHHHH
T ss_pred HHHhccCHHHHHHH
Confidence 66799999854444
No 4
>2rr3_B OSBP, oxysterol-binding protein 1; lipid transport, transport, protein-peptide complex, major S protein domain, protein binding; NMR {Homo sapiens}
Probab=20.12 E-value=56 Score=21.35 Aligned_cols=16 Identities=31% Similarity=0.333 Sum_probs=8.3
Q ss_pred cccCCCCCCCCCcchh
Q 024013 66 GWFFNPKGDDDDNNNR 81 (274)
Q Consensus 66 ~~~~~~~~~~~~~~~~ 81 (274)
+.+...|.+.+|+|+|
T Consensus 3 g~~~~~KGe~SdEDed 18 (47)
T 2rr3_B 3 GSDHWGKGDMSDEDDE 18 (47)
T ss_dssp CCSSCCCCCSCCCCCS
T ss_pred cccccccccccccccc
Confidence 3344456555555555
No 5
>2wsw_A BCCT family betaine/carnitine/choline transporter; transport protein, SD methionine, membrane protein; HET: CM5 1PE; 2.29A {Proteus mirabilis} PDB: 2wsx_A* 3hfx_A*
Probab=19.46 E-value=4.9e+02 Score=25.16 Aligned_cols=29 Identities=7% Similarity=0.019 Sum_probs=20.4
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHhhccHHH
Q 024013 119 TMGYVYKDQINAFLTQFSGFIEGYGPAGY 147 (274)
Q Consensus 119 ~~~~~~~~~L~~~l~~l~~~i~~~g~~g~ 147 (274)
+++..+++...+..+.+.+|+.++--|.+
T Consensus 32 ~~~~~~p~~~~~~~~~~~~~i~~~fgW~y 60 (509)
T 2wsw_A 32 WLTVRDLDASNEVINAVFSYVTNVWGWAF 60 (509)
T ss_dssp HHHHHCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 34456778888888899999887544433
No 6
>3j27_B Matrix protein, small envelope protein M; flavivirus, fusion protein, protein complex, membrane, chape virus; HET: NAG; 3.60A {Dengue virus 2} PDB: 3j2p_B* 1p58_D
Probab=13.17 E-value=2e+02 Score=20.65 Aligned_cols=33 Identities=6% Similarity=0.013 Sum_probs=23.7
Q ss_pred HHhHHHHHHHHHHHHHHHHhhccHHHHHHHHHH
Q 024013 122 YVYKDQINAFLTQFSGFIEGYGPAGYALFVAVY 154 (274)
Q Consensus 122 ~~~~~~L~~~l~~l~~~i~~~g~~g~lifvll~ 154 (274)
|...+...+.++.++.|+-.++.++.++.++.+
T Consensus 19 Wl~~~~~~~~l~rvE~WilrNp~~al~~~~~~w 51 (75)
T 3j27_B 19 WMSSEGAWKHAQRIETWILRHPGFTIMAAILAY 51 (75)
T ss_dssp SSTTHHHHHHHHHHHHHHHHCCTHHHHHHHHHH
T ss_pred CcCcchHHHHHHHHHHHHHHChHHHHHHHHHHH
Confidence 455567778889999999998877755544444
No 7
>2lbg_A Major prion protein; conserved hydrophobic region, membrane protei; NMR {Homo sapiens}
Probab=12.57 E-value=1.9e+02 Score=16.84 Aligned_cols=18 Identities=6% Similarity=0.207 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 024013 185 SISGTVAASVAFLIARYF 202 (274)
Q Consensus 185 ~lG~~lGa~i~F~IgR~l 202 (274)
..|.++|+.-+|++|+-+
T Consensus 8 AAGaVvGglGgy~lg~~m 25 (27)
T 2lbg_A 8 AAGAVVGGLGGYMLGSAM 25 (27)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhhHHHHHHHHh
Confidence 456667777777777654
No 8
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=12.47 E-value=4e+02 Score=19.00 Aligned_cols=38 Identities=8% Similarity=-0.006 Sum_probs=0.0
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 024013 96 GDTAVKGSILAGVLLLVVVGGFGTMGYVYKDQINAFLT 133 (274)
Q Consensus 96 ~~~~~~~~ll~~v~lv~~v~~l~~~~~~~~~~L~~~l~ 133 (274)
.+.......+.+++.++++|.+.++.|.....+.+-.|
T Consensus 6 ~~~n~~~Iv~gvi~gilliGllllliwk~~~~i~DrrE 43 (79)
T 2knc_B 6 KGPDILVVLLSVMGAILLIGLAALLIWKLLITIHDRKE 43 (79)
T ss_dssp SSSCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 9
>1p58_D Envelope protein M; flavivirus, flaviviridae, glycoprotein E from borne encephalitis virus, membrane protein M, cryo-EM, ICOS virus; 9.50A {Dengue virus 2 puerto rico} SCOP: i.17.1.1
Probab=12.39 E-value=2.1e+02 Score=20.51 Aligned_cols=35 Identities=6% Similarity=-0.025 Sum_probs=0.0
Q ss_pred HHhHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHh
Q 024013 122 YVYKDQINAFLTQFSGFIEGYGPAGYALFVAVYAG 156 (274)
Q Consensus 122 ~~~~~~L~~~l~~l~~~i~~~g~~g~lifvll~i~ 156 (274)
|...+...+.++.++.|+-.++.++.++.++.+.+
T Consensus 19 Wl~~~~~~~~l~kvE~WilrNp~~al~a~~~~w~l 53 (75)
T 1p58_D 19 WMSSEGAWKHAQRIETWILRHPGFTIMAAILAYTI 53 (75)
T ss_pred ccCcchHHHHHHHHHHHHHHChHHHHHHHHHHHHH
No 10
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=11.99 E-value=62 Score=28.70 Aligned_cols=24 Identities=17% Similarity=0.158 Sum_probs=0.0
Q ss_pred CCCCCCcchhccCCCCCCCCCCCc
Q 024013 72 KGDDDDNNNRIQGNGMDAESEGLE 95 (274)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~ 95 (274)
..+++|+++++++|++++|++.++
T Consensus 339 ~~d~~~e~e~e~eeeee~eee~~~ 362 (386)
T 2ca6_A 339 ELDDMEELTDEEEEDEEEEAESQS 362 (386)
T ss_dssp CCCSCC------------------
T ss_pred hccccccccccccccccccccccc
Done!